DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.998e^-21)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.018907
In_2R_NS	<

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	23.7729	6.883e-06
In_2R_NS	10.2197	0.006

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

4358 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5749736	3R_5749736_SNP [dm3] 3R_9924014_SNP [dm6]	G	T	1.287e^-7	0.075	INTRON Glut4EF
3R	27081378	3R_27081378_SNP [dm3] 3R_31255656_SNP [dm6]	C	A	1.781e^-7	0.075	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5749737	3R_5749737_SNP [dm3] 3R_9924015_SNP [dm6]	T	A	1.842e^-7	0.075	INTRON Glut4EF
2L	5059830	2L_5059830_SNP [dm3] 2L_5059830_SNP [dm6]	G	A	1.919e^-7	0.075	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	15479915	X_15479915_SNP [dm3] X_15585882_SNP [dm6]	C	T	2.036e^-7	0.075	UTR_3_PRIME CG9220 DOWNSTREAM CG8097	TF binding site mE1_TFBS_cad
3R	24105628	3R_24105628_SNP [dm3] 3R_28279906_SNP [dm6]	C	T	2.662e^-7	0.075	INTERGENIC
2R	18438479	2R_18438479_SNP [dm3] 2R_22550974_SNP [dm6]	C	T	3.198e^-7	0.075	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10401921	X_10401921_SNP [dm3] X_10507888_SNP [dm6]	T	C	3.359e^-7	0.075	INTRON spri
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	3.592e^-7	0.075	INTRON Pde9
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	4.512e^-7	0.085	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10091812	3L_10091812_SNP [dm3] 3L_10098712_SNP [dm6]	G	C	5.894e^-7	0.087	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	6.983e^-7	0.087	INTERGENIC
X	10400173	X_10400173_SNP [dm3] X_10506140_SNP [dm6]	A	G	7.351e^-7	0.087	INTRON spri
2L	12827807	2L_12827807_SNP [dm3] 2L_12827807_SNP [dm6]	C	G	7.431e^-7	0.087	INTERGENIC
2L	15319282	2L_15319282_SNP [dm3] 2L_15319282_SNP [dm6]	A	G	8.575e^-7	0.087	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18460323	3L_18460323_SNP [dm3] 3L_18467223_SNP [dm6]	T	C	8.639e^-7	0.087	INTERGENIC
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	8.964e^-7	0.087	DOWNSTREAM CG42713 INTERGENIC
3R	24105625	3R_24105625_SNP [dm3] 3R_28279903_SNP [dm6]	A	T	9.015e^-7	0.087	INTERGENIC
2L	8096361	2L_8096361_INS [dm3] 2L_8096361_INS [dm6]	C	CGGTTTTCTTTAAAT...	9.583e^-7	0.087	INTRON Bsg
3L	8463332	3L_8463332_SNP [dm3] 3L_8470232_SNP [dm6]	C	T	9.730e^-7	0.087	INTRON Gug
3R	23853048	3R_23853048_SNP [dm3] 3R_28027326_SNP [dm6]	A	T	1.005e^-6	0.087	INTRON CG34362
3R	14591678	3R_14591678_SNP [dm3] 3R_18765956_SNP [dm6]	G	C	1.089e^-6	0.087	INTRON CG7720
X	17397279	X_17397279_SNP [dm3] X_17503246_SNP [dm6]	T	C	1.256e^-6	0.087	INTRON CG43658	TF binding site BDTNP1_TFBS_twi
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	1.258e^-6	0.087	INTRON CG4829
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	1.262e^-6	0.087	UPSTREAM CG42713 INTERGENIC
3R	16107120	3R_16107120_SNP [dm3] 3R_20281398_SNP [dm6]	A	G	1.292e^-6	0.087	INTRON cic
3L	1719544	3L_1719544_SNP [dm3] 3L_1719544_SNP [dm6]	C	A	1.369e^-6	0.087	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13020068	2L_13020068_DEL [dm3] 2L_13020068_DEL [dm6]	AAA	A	1.399e^-6	0.087	UPSTREAM CG9934 INTRON A16	TF binding site mE1_TFBS_cad
2L	8895468	2L_8895468_SNP [dm3] 2L_8895468_SNP [dm6]	A	T	1.419e^-6	0.087	INTERGENIC
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	1.459e^-6	0.087	INTRON Pde9
3R	24105586	3R_24105586_SNP [dm3] 3R_28279864_SNP [dm6]	T	G	1.470e^-6	0.087	INTERGENIC
2L	17869516	2L_17869516_SNP [dm3] 2L_17869516_SNP [dm6]	T	A	1.481e^-6	0.087	INTRON CadN2
3R	14591888	3R_14591888_SNP [dm3] 3R_18766166_SNP [dm6]	C	T	1.535e^-6	0.087	INTRON CG7720
2L	8096349	2L_8096349_DEL [dm3] 2L_8096349_DEL [dm6]	CCACAGGAGA	T	1.662e^-6	0.089	INTRON Bsg
3L	8606061	3L_8606061_SNP [dm3] 3L_8612961_SNP [dm6]	C	T	1.701e^-6	0.089	INTRON CG6282
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	1.706e^-6	0.089	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	12840644	2L_12840644_SNP [dm3] 2L_12840644_SNP [dm6]	A	C	1.788e^-6	0.091	UPSTREAM CR44970 & 1 other INTERGENIC
3R	23852615	3R_23852615_SNP [dm3] 3R_28026893_SNP [dm6]	C	T	1.876e^-6	0.092	INTRON CG34362
2L	15319467	2L_15319467_SNP [dm3] 2L_15319467_SNP [dm6]	A	G	1.916e^-6	0.092	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8829226	X_8829226_SNP [dm3] X_8935193_SNP [dm6]	T	C	2.004e^-6	0.094	INTRON rdgA
3R	24105631	3R_24105631_SNP [dm3] 3R_28279909_SNP [dm6]	T	C	2.078e^-6	0.094	INTERGENIC
2L	12824513	2L_12824513_SNP [dm3] 2L_12824513_SNP [dm6]	C	A	2.098e^-6	0.094	INTERGENIC
2L	12840689	2L_12840689_SNP [dm3] 2L_12840689_SNP [dm6]	A	T	2.167e^-6	0.095	UPSTREAM CR44970 & 1 other INTERGENIC
X	7480202	X_7480202_SNP [dm3] X_7586169_SNP [dm6]	A	G	2.392e^-6	0.097	UPSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
X	7407114	X_7407114_SNP [dm3] X_7513081_SNP [dm6]	T	G	2.400e^-6	0.097	INTRON CG32719
X	11243109	X_11243109_SNP [dm3] X_11349076_SNP [dm6]	A	C	2.437e^-6	0.097	UTR_5_PRIME CG1738 UPSTREAM CG11752 DOWNSTREAM CG11756	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5059841	2L_5059841_SNP [dm3] 2L_5059841_SNP [dm6]	T	C	2.480e^-6	0.097	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	15319340	2L_15319340_SNP [dm3] 2L_15319340_SNP [dm6]	A	G	2.505e^-6	0.097	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12671635	X_12671635_SNP [dm3] X_12777602_SNP [dm6]	G	C	2.549e^-6	0.097	INTRON CG32647
2R	16489867	2R_16489867_SNP [dm3] 2R_20602362_SNP [dm6]	A	C	2.629e^-6	0.097	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	2.634e^-6	0.097	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10420231	2L_10420231_SNP [dm3] 2L_10420231_SNP [dm6]	A	C	2.851e^-6	0.103	DOWNSTREAM pie INTRON RfC3	TF binding site mE1_TFBS_ttk
2L	15349755	2L_15349755_SNP [dm3] 2L_15349755_SNP [dm6]	A	C	2.973e^-6	0.105	INTERGENIC
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	3.070e^-6	0.105	INTRON Pkcdelta
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	3.157e^-6	0.105	INTRON CG8861
3R	16104869	3R_16104869_SNP [dm3] 3R_20279147_SNP [dm6]	A	T	3.166e^-6	0.105	INTRON cic
3R	810200	3R_810200_INS [dm3] 3R_4984478_INS [dm6]	A	ACA	3.321e^-6	0.105	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	3.381e^-6	0.105	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16107125	3R_16107125_SNP [dm3] 3R_20281403_SNP [dm6]	T	G	3.404e^-6	0.105	INTRON cic
3R	16107134	3R_16107134_SNP [dm3] 3R_20281412_SNP [dm6]	G	T	3.407e^-6	0.105	INTRON cic
3R	16107135	3R_16107135_SNP [dm3] 3R_20281413_SNP [dm6]	C	G	3.428e^-6	0.105	INTRON cic
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	3.790e^-6	0.113	INTRON aret
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	3.815e^-6	0.113	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	4.146e^-6	0.113	INTRON CG43386
3R	16107154	3R_16107154_SNP [dm3] 3R_20281432_SNP [dm6]	A	T	4.156e^-6	0.113	INTRON cic
2L	15319276	2L_15319276_SNP [dm3] 2L_15319276_SNP [dm6]	G	A	4.164e^-6	0.113	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12824096	2L_12824096_SNP [dm3] 2L_12824096_SNP [dm6]	A	G	4.217e^-6	0.113	INTERGENIC
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	4.320e^-6	0.113	UPSTREAM CG5623 INTERGENIC
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	4.374e^-6	0.113	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2L	8096077	2L_8096077_SNP [dm3] 2L_8096077_SNP [dm6]	T	A	4.513e^-6	0.113	INTRON Bsg
2L	17867777	2L_17867777_SNP [dm3] 2L_17867777_SNP [dm6]	C	A	4.601e^-6	0.113	INTRON CadN2
2L	18676857	2L_18676857_SNP [dm3] 2L_18676857_SNP [dm6]	A	G	4.661e^-6	0.113	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM CG31751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	8096039	2L_8096039_SNP [dm3] 2L_8096039_SNP [dm6]	G	C	4.668e^-6	0.113	INTRON Bsg
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	4.694e^-6	0.113	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16107155	3R_16107155_SNP [dm3] 3R_20281433_SNP [dm6]	G	T	4.707e^-6	0.113	INTRON cic
2L	12841291	2L_12841291_SNP [dm3] 2L_12841291_SNP [dm6]	A	T	4.752e^-6	0.113	UPSTREAM CR44971 EXON CR44970
2L	15319295	2L_15319295_SNP [dm3] 2L_15319295_SNP [dm6]	T	C	4.797e^-6	0.113	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14419590	2L_14419590_SNP [dm3] 2L_14419590_SNP [dm6]	T	C	4.813e^-6	0.113	INTERGENIC
2L	18672643	2L_18672643_SNP [dm3] 2L_18672643_SNP [dm6]	T	A	4.907e^-6	0.113	NON_SYNONYMOUS_CODING CG43339 DOWNSTREAM Mst36Fb
X	12239910	X_12239910_SNP [dm3] X_12345877_SNP [dm6]	C	T	4.928e^-6	0.113	INTERGENIC
3L	18460309	3L_18460309_SNP [dm3] 3L_18467209_SNP [dm6]	A	G	4.941e^-6	0.113	INTERGENIC
X	9547791	X_9547791_SNP [dm3] X_9653758_SNP [dm6]	T	G	4.952e^-6	0.113	INTRON l_1_G0232
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	5.193e^-6	0.115	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6099928	2L_6099928_SNP [dm3] 2L_6099928_SNP [dm6]	C	T	5.208e^-6	0.115	UPSTREAM CG9175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25882076	3R_25882076_SNP [dm3] 3R_30056354_SNP [dm6]	G	T	5.233e^-6	0.115	NON_SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	23853050	3R_23853050_SNP [dm3] 3R_28027328_SNP [dm6]	T	A	5.321e^-6	0.116	INTRON CG34362
3R	16104879	3R_16104879_SNP [dm3] 3R_20279157_SNP [dm6]	A	G	5.485e^-6	0.117	INTRON cic
2L	5074881	2L_5074881_SNP [dm3] 2L_5074881_SNP [dm6]	A	G	5.571e^-6	0.117	INTRON pgant5
3R	810190	3R_810190_INS [dm3] 3R_4984468_INS [dm6]	T	TG	5.649e^-6	0.117	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	3492624	3L_3492624_SNP [dm3] 3L_3492624_SNP [dm6]	C	A	5.677e^-6	0.117	INTRON CG42324
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	5.685e^-6	0.117	INTRON CG34348
2L	12446288	2L_12446288_SNP [dm3] 2L_12446288_SNP [dm6]	C	T	5.764e^-6	0.117	UTR_3_PRIME CG5421 UPSTREAM Oatp33Ea	TF binding site BDTNP1_TFBS_da
X	12722141	X_12722141_SNP [dm3] X_12828108_SNP [dm6]	C	T	5.817e^-6	0.117	INTRON Pde9
X	15711445	X_15711445_SNP [dm3] X_15817412_SNP [dm6]	G	A	5.987e^-6	0.117	UPSTREAM sd INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
3L	13072190	3L_13072190_SNP [dm3] 3L_13079090_SNP [dm6]	A	T	5.995e^-6	0.117	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	26373786	3R_26373786_SNP [dm3] 3R_30548064_SNP [dm6]	A	G	6.015e^-6	0.117	INTRON tmod
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	6.058e^-6	0.117	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13140901	X_13140901_SNP [dm3] X_13246868_SNP [dm6]	T	G	6.455e^-6	0.122	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	10693487	2L_10693487_SNP [dm3] 2L_10693487_SNP [dm6]	T	C	6.616e^-6	0.122	NON_SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	857561	3R_857561_SNP [dm3] 3R_5031839_SNP [dm6]	A	C	6.620e^-6	0.122	INTERGENIC
3R	11594134	3R_11594134_SNP [dm3] 3R_15768412_SNP [dm6]	C	T	6.678e^-6	0.122	UPSTREAM CG5623 INTERGENIC
3R	7101386	3R_7101386_SNP [dm3] 3R_11275664_SNP [dm6]	C	A	6.725e^-6	0.122	INTRON CR31386
2L	15345707	2L_15345707_SNP [dm3] 2L_15345707_SNP [dm6]	G	A	6.924e^-6	0.122	INTERGENIC
X	9429970	X_9429970_SNP [dm3] X_9535937_SNP [dm6]	T	G	6.926e^-6	0.122	INTRON CG32700
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	6.943e^-6	0.122	UPSTREAM CG6018 INTRON px
3R	16104897	3R_16104897_SNP [dm3] 3R_20279175_SNP [dm6]	A	G	7.025e^-6	0.122	INTRON cic
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	7.066e^-6	0.122	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2L	17879005	2L_17879005_SNP [dm3] 2L_17879005_SNP [dm6]	C	T	7.066e^-6	0.122	INTERGENIC
3L	18859273	3L_18859273_SNP [dm3] 3L_18866173_SNP [dm6]	C	A	7.294e^-6	0.122	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12840668	2L_12840668_SNP [dm3] 2L_12840668_SNP [dm6]	T	C	7.297e^-6	0.122	UPSTREAM CR44970 & 1 other INTERGENIC
3L	18444670	3L_18444670_SNP [dm3] 3L_18451570_SNP [dm6]	G	A	7.350e^-6	0.122	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18862716	3L_18862716_SNP [dm3] 3L_18869616_SNP [dm6]	C	A	7.372e^-6	0.122	SYNONYMOUS_CODING CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	18460729	3L_18460729_SNP [dm3] 3L_18467629_SNP [dm6]	C	A	7.374e^-6	0.122	INTERGENIC
2L	11025008	2L_11025008_DEL [dm3] 2L_11025008_DEL [dm6]	CTAATTCCGTTTTTCCCAAC...	C	7.451e^-6	0.123	INTRON Samuel
X	8807598	X_8807598_SNP [dm3] X_8913565_SNP [dm6]	A	T	7.614e^-6	0.124	INTRON rdgA
X	12718503	X_12718503_INS [dm3] X_12824470_INS [dm6]	A	AA	7.746e^-6	0.125	INTRON Pde9
2L	15319396	2L_15319396_SNP [dm3] 2L_15319396_SNP [dm6]	G	T	7.799e^-6	0.125	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17868295	2L_17868295_SNP [dm3] 2L_17868295_SNP [dm6]	G	T	8.015e^-6	0.127	INTRON CadN2
3L	18444671	3L_18444671_SNP [dm3] 3L_18451571_SNP [dm6]	T	C	8.107e^-6	0.127	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	17878801	2L_17878801_SNP [dm3] 2L_17878801_SNP [dm6]	A	G	8.162e^-6	0.127	INTERGENIC
X	10399805	X_10399805_SNP [dm3] X_10505772_SNP [dm6]	A	G	8.205e^-6	0.127	INTRON spri
3L	9242875	3L_9242875_SNP [dm3] 3L_9249775_SNP [dm6]	G	A	8.338e^-6	0.127	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26374246	3R_26374246_SNP [dm3] 3R_30548524_SNP [dm6]	A	C	8.365e^-6	0.127	UTR_5_PRIME tmod INTRON tmod
X	11737371	X_11737371_SNP [dm3] X_11843338_SNP [dm6]	T	C	8.382e^-6	0.127	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3848033	3L_3848033_SNP [dm3] 3L_3848033_SNP [dm6]	C	T	8.562e^-6	0.127	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	10400338	X_10400338_SNP [dm3] X_10506305_SNP [dm6]	C	T	8.667e^-6	0.127	INTRON spri
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	8.726e^-6	0.127	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	8.726e^-6	0.127	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	8.726e^-6	0.127	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18453521	3L_18453521_SNP [dm3] 3L_18460421_SNP [dm6]	A	T	9.102e^-6	0.127	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	5502595	X_5502595_SNP [dm3] X_5608562_SNP [dm6]	C	A	9.124e^-6	0.127	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	99423	3L_99423_SNP [dm3] 3L_99423_SNP [dm6]	C	T	9.133e^-6	0.127	INTERGENIC	TF binding site mE1_TFBS_zfh1
3L	2945764	3L_2945764_SNP [dm3] 3L_2945764_SNP [dm6]	C	G	9.171e^-6	0.127	UTR_3_PRIME Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12523617	2L_12523617_SNP [dm3] 2L_12523617_SNP [dm6]	C	T	9.257e^-6	0.127	INTRON bun
X	10440823	X_10440823_SNP [dm3] X_10546790_SNP [dm6]	A	G	9.260e^-6	0.127	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10441001	X_10441001_SNP [dm3] X_10546968_SNP [dm6]	G	A	9.260e^-6	0.127	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	9.271e^-6	0.127	INTRON dnc
2L	5076791	2L_5076791_DEL [dm3] 2L_5076791_DEL [dm6]	GGTG	G	9.452e^-6	0.128	INTRON pgant5
2L	14542303	2L_14542303_SNP [dm3] 2L_14542303_SNP [dm6]	A	G	9.638e^-6	0.13	INTERGENIC
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	9.949e^-6	0.133	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	1.006e^-5	0.133	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
X	8829373	X_8829373_SNP [dm3] X_8935340_SNP [dm6]	A	G	1.009e^-5	0.133	INTRON rdgA
X	12722144	X_12722144_SNP [dm3] X_12828111_SNP [dm6]	C	G	1.014e^-5	0.133	INTRON Pde9
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	1.025e^-5	0.133	UPSTREAM CG5623 INTERGENIC
2L	8893211	2L_8893211_SNP [dm3] 2L_8893211_SNP [dm6]	G	A	1.032e^-5	0.133	INTERGENIC
2L	12207776	2L_12207776_SNP [dm3] 2L_12207776_SNP [dm6]	C	T	1.058e^-5	0.133	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2L	17868789	2L_17868789_SNP [dm3] 2L_17868789_SNP [dm6]	C	T	1.071e^-5	0.133	INTRON CadN2
3L	18730262	3L_18730262_SNP [dm3] 3L_18737162_SNP [dm6]	C	T	1.072e^-5	0.133	INTERGENIC
2R	3817412	2R_3817412_SNP [dm3] 2R_7929907_SNP [dm6]	A	G	1.074e^-5	0.133	UTR_3_PRIME CG8791 & 1 other
X	15483902	X_15483902_SNP [dm3] X_15589869_SNP [dm6]	G	A	1.077e^-5	0.133	SYNONYMOUS_CODING CG9220 DOWNSTREAM CG8105
3R	810198	3R_810198_SNP [dm3] 3R_4984476_SNP [dm6]	C	A	1.077e^-5	0.133	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	15319459	2L_15319459_SNP [dm3] 2L_15319459_SNP [dm6]	T	C	1.085e^-5	0.133	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17867817	2L_17867817_SNP [dm3] 2L_17867817_SNP [dm6]	C	T	1.088e^-5	0.133	INTRON CadN2
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	1.093e^-5	0.133	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	4791052	3R_4791052_SNP [dm3] 3R_8965330_SNP [dm6]	C	T	1.121e^-5	0.136	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12183890	2L_12183890_DEL [dm3] 2L_12183890_DEL [dm6]	AAAACCACTTATTTCATTTA...	A	1.139e^-5	0.136	INTRON aret
2L	17868257	2L_17868257_SNP [dm3] 2L_17868257_SNP [dm6]	T	G	1.142e^-5	0.136	INTRON CadN2
3L	16333699	3L_16333699_SNP [dm3] 3L_16340599_SNP [dm6]	G	A	1.144e^-5	0.136	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12815034	2L_12815034_SNP [dm3] 2L_12815034_SNP [dm6]	C	T	1.180e^-5	0.137	INTERGENIC
3L	9751501	3L_9751501_SNP [dm3] 3L_9758401_SNP [dm6]	A	C	1.185e^-5	0.137	INTRON CG42268
2L	6102905	2L_6102905_DEL [dm3] 2L_6102905_DEL [dm6]	CACC	C	1.189e^-5	0.137	INTRON stai
2L	17872634	2L_17872634_SNP [dm3] 2L_17872634_SNP [dm6]	A	G	1.192e^-5	0.137	INTRON CadN2
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	1.196e^-5	0.137	INTRON Pde9
3L	18730260	3L_18730260_SNP [dm3] 3L_18737160_SNP [dm6]	G	A	1.198e^-5	0.137	INTERGENIC
3R	14175622	3R_14175622_SNP [dm3] 3R_18349900_SNP [dm6]	C	A	1.203e^-5	0.137	INTRON CG15803
3R	810193	3R_810193_SNP [dm3] 3R_4984471_SNP [dm6]	C	A	1.213e^-5	0.137	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	20540226	3R_20540226_SNP [dm3] 3R_24714504_SNP [dm6]	G	T	1.244e^-5	0.137	UPSTREAM CG13627 INTRON CG13627
X	12646171	X_12646171_SNP [dm3] X_12752138_SNP [dm6]	C	T	1.262e^-5	0.137	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3521484	2L_3521484_SNP [dm3] 2L_3521484_SNP [dm6]	G	A	1.262e^-5	0.137	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19829123	2R_19829123_SNP [dm3] 2R_23941600_SNP [dm6]	G	C	1.263e^-5	0.137	SYNONYMOUS_CODING Tal UPSTREAM Galphas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6508376	2L_6508376_SNP [dm3] 2L_6508376_SNP [dm6]	C	T	1.275e^-5	0.137	INTRON CG31637 EXON CR44775	TF binding site BDTNP1_TFBS_hb
2L	12845317	2L_12845317_SNP [dm3] 2L_12845317_SNP [dm6]	T	C	1.277e^-5	0.137	INTERGENIC
2L	10660634	2L_10660634_SNP [dm3] 2L_10660634_SNP [dm6]	A	G	1.278e^-5	0.137	INTERGENIC
2L	12841313	2L_12841313_SNP [dm3] 2L_12841313_SNP [dm6]	A	G	1.278e^-5	0.137	UPSTREAM CR44971 EXON CR44970
3R	810197	3R_810197_SNP [dm3] 3R_4984475_SNP [dm6]	T	A	1.281e^-5	0.137	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	17538550	3L_17538550_SNP [dm3] 3L_17545450_SNP [dm6]	A	C	1.285e^-5	0.137	INTRON Nedd4	TF binding site mE1_TFBS_sens
3L	18473922	3L_18473922_SNP [dm3] 3L_18480822_SNP [dm6]	A	T	1.307e^-5	0.139	INTERGENIC
X	10782899	X_10782899_SNP [dm3] X_10888866_SNP [dm6]	T	A	1.316e^-5	0.139	INTRON Ork1
2L	17873128	2L_17873128_SNP [dm3] 2L_17873128_SNP [dm6]	C	A	1.338e^-5	0.14	INTRON CadN2
2R	13140470	2R_13140470_SNP [dm3] 2R_17252965_SNP [dm6]	T	C	1.340e^-5	0.14	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15343574	2L_15343574_SNP [dm3] 2L_15343574_SNP [dm6]	G	C	1.371e^-5	0.142	INTERGENIC
3R	15173574	3R_15173574_SNP [dm3] 3R_19347852_SNP [dm6]	T	G	1.414e^-5	0.145	INTERGENIC
2L	16431169	2L_16431169_SNP [dm3] 2L_16431169_SNP [dm6]	C	T	1.422e^-5	0.145	INTRON CG5888
3R	14269380	3R_14269380_SNP [dm3] 3R_18443658_SNP [dm6]	A	C	1.429e^-5	0.145	INTRON fru
3L	18459325	3L_18459325_SNP [dm3] 3L_18466225_SNP [dm6]	G	A	1.448e^-5	0.145	INTERGENIC
2L	17868806	2L_17868806_SNP [dm3] 2L_17868806_SNP [dm6]	T	A	1.450e^-5	0.145	INTRON CadN2
3L	18857191	3L_18857191_DEL [dm3] 3L_18864091_DEL [dm6]	TC	T	1.450e^-5	0.145	UPSTREAM CG6865 INTRON CG6865
2L	10833262	2L_10833262_SNP [dm3] 2L_10833262_SNP [dm6]	A	C	1.477e^-5	0.147	INTRON Nos
X	20023391	X_20023391_SNP [dm3] X_20129358_SNP [dm6]	T	A	1.499e^-5	0.147	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17868341	2L_17868341_SNP [dm3] 2L_17868341_SNP [dm6]	C	T	1.510e^-5	0.147	INTRON CadN2
2L	5076084	2L_5076084_SNP [dm3] 2L_5076084_SNP [dm6]	G	T	1.513e^-5	0.147	INTRON pgant5
2R	18399890	2R_18399890_SNP [dm3] 2R_22512385_SNP [dm6]	A	G	1.519e^-5	0.147	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	8463333	3L_8463333_SNP [dm3] 3L_8470233_SNP [dm6]	A	G	1.522e^-5	0.147	INTRON Gug
3L	3871831	3L_3871831_SNP [dm3] 3L_3871831_SNP [dm6]	C	A	1.530e^-5	0.147	INTERGENIC
3L	10091559	3L_10091559_SNP [dm3] 3L_10098459_SNP [dm6]	T	A	1.539e^-5	0.147	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3R	5991101	3R_5991101_SNP [dm3] 3R_10165379_SNP [dm6]	G	C	1.541e^-5	0.147	SYNONYMOUS_CODING Best1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5118987	2L_5118987_SNP [dm3] 2L_5118987_SNP [dm6]	A	T	1.564e^-5	0.149	INTRON Msp300
X	10401923	X_10401923_SNP [dm3] X_10507890_SNP [dm6]	C	A	1.580e^-5	0.149	INTRON spri
3R	16076067	3R_16076067_SNP [dm3] 3R_20250345_SNP [dm6]	C	G	1.593e^-5	0.149	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4793654	3R_4793654_SNP [dm3] 3R_8967932_SNP [dm6]	C	A	1.597e^-5	0.149	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	14829336	X_14829336_SNP [dm3] X_14935303_SNP [dm6]	A	G	1.602e^-5	0.149	INTRON pdgy
2R	4758574	2R_4758574_SNP [dm3] 2R_8871069_SNP [dm6]	T	A	1.608e^-5	0.149	INTRON RyR
3L	11129525	3L_11129525_SNP [dm3] 3L_11136425_SNP [dm6]	G	T	1.613e^-5	0.149	DOWNSTREAM CG14143 INTRON CG32082
2L	15319463	2L_15319463_SNP [dm3] 2L_15319463_SNP [dm6]	C	A	1.618e^-5	0.149	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	1.651e^-5	0.15	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	1.656e^-5	0.15	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	2591847	3L_2591847_SNP [dm3] 3L_2591847_SNP [dm6]	A	T	1.659e^-5	0.15	INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	14552403	2L_14552403_SNP [dm3] 2L_14552403_SNP [dm6]	T	C	1.666e^-5	0.15	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	15409090	3R_15409090_SNP [dm3] 3R_19583368_SNP [dm6]	T	A	1.674e^-5	0.15	INTRON Dys
3L	16334602	3L_16334602_SNP [dm3] 3L_16341502_SNP [dm6]	T	C	1.690e^-5	0.15	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23853092	3R_23853092_SNP [dm3] 3R_28027370_SNP [dm6]	G	A	1.705e^-5	0.15	INTRON CG34362
X	10400273	X_10400273_SNP [dm3] X_10506240_SNP [dm6]	C	G	1.716e^-5	0.15	INTRON spri
2R	12293109	2R_12293109_SNP [dm3] 2R_16405604_SNP [dm6]	G	A	1.717e^-5	0.15	INTRON Sema-2b
2L	15319482	2L_15319482_SNP [dm3] 2L_15319482_SNP [dm6]	T	A	1.737e^-5	0.15	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15261408	3R_15261408_SNP [dm3] 3R_19435686_SNP [dm6]	T	A	1.754e^-5	0.15	INTRON CG31221
X	11876380	X_11876380_SNP [dm3] X_11982347_SNP [dm6]	T	A	1.760e^-5	0.15	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18862554	3L_18862554_SNP [dm3] 3L_18869454_SNP [dm6]	C	T	1.782e^-5	0.15	UTR_5_PRIME CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3L	10093750	3L_10093750_SNP [dm3] 3L_10100650_SNP [dm6]	C	A	1.790e^-5	0.15	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
X	9185474	X_9185474_SNP [dm3] X_9291441_SNP [dm6]	T	A	1.791e^-5	0.15	INTRON lz
X	10782877	X_10782877_SNP [dm3] X_10888844_SNP [dm6]	T	G	1.792e^-5	0.15	INTRON Ork1
2L	17870881	2L_17870881_SNP [dm3] 2L_17870881_SNP [dm6]	A	G	1.797e^-5	0.15	INTRON CadN2
2L	15343546	2L_15343546_SNP [dm3] 2L_15343546_SNP [dm6]	A	T	1.800e^-5	0.15	INTERGENIC
2R	18335029	2R_18335029_SNP [dm3] 2R_22447524_SNP [dm6]	G	C	1.817e^-5	0.15	INTERGENIC
2L	12456165	2L_12456165_SNP [dm3] 2L_12456165_SNP [dm6]	T	C	1.834e^-5	0.15	UTR_3_PRIME bun DOWNSTREAM bun
3L	2046684	3L_2046684_SNP [dm3] 3L_2046684_SNP [dm6]	A	T	1.834e^-5	0.15	INTRON sls
2R	18399872	2R_18399872_SNP [dm3] 2R_22512367_SNP [dm6]	C	G	1.840e^-5	0.15	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11036933	2L_11036933_SNP [dm3] 2L_11036933_SNP [dm6]	A	C	1.845e^-5	0.15	INTRON Samuel
3R	26380195	3R_26380195_SNP [dm3] 3R_30554473_SNP [dm6]	G	T	1.848e^-5	0.15	DOWNSTREAM CG34155 INTRON tmod
2L	15319359	2L_15319359_SNP [dm3] 2L_15319359_SNP [dm6]	A	T	1.872e^-5	0.15	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8841804	3L_8841804_SNP [dm3] 3L_8848704_SNP [dm6]	G	A	1.877e^-5	0.15	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8890520	2L_8890520_SNP [dm3] 2L_8890520_SNP [dm6]	T	A	1.878e^-5	0.15	UPSTREAM CG42713 INTERGENIC
2L	12840683	2L_12840683_SNP [dm3] 2L_12840683_SNP [dm6]	G	A	1.885e^-5	0.15	UPSTREAM CR44970 & 1 other INTERGENIC
2L	3937240	2L_3937240_SNP [dm3] 2L_3937240_SNP [dm6]	C	G	1.889e^-5	0.15	INTRON fred
3L	18871272	3L_18871272_SNP [dm3] 3L_18878172_SNP [dm6]	G	T	1.894e^-5	0.15	UTR_3_PRIME Ugt DOWNSTREAM CG3961
X	10400497	X_10400497_SNP [dm3] X_10506464_SNP [dm6]	T	C	1.897e^-5	0.15	INTRON spri
2L	8096034	2L_8096034_SNP [dm3] 2L_8096034_SNP [dm6]	A	C	1.899e^-5	0.15	INTRON Bsg
2L	5158162	2L_5158162_SNP [dm3] 2L_5158162_SNP [dm6]	T	A	1.910e^-5	0.15	UTR_3_PRIME Msp300 INTRON Msp300
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	1.912e^-5	0.15	NON_SYNONYMOUS_CODING CG42713
3L	18858509	3L_18858509_SNP [dm3] 3L_18865409_SNP [dm6]	C	G	1.918e^-5	0.15	NON_SYNONYMOUS_CODING CG6865 UPSTREAM CG14074	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	15343560	2L_15343560_SNP [dm3] 2L_15343560_SNP [dm6]	T	A	1.920e^-5	0.15	INTERGENIC
X	10400170	X_10400170_SNP [dm3] X_10506137_SNP [dm6]	C	T	1.923e^-5	0.15	INTRON spri
X	10148017	X_10148017_SNP [dm3] X_10253984_SNP [dm6]	G	C	1.969e^-5	0.152	INTRON Hk
2L	12841310	2L_12841310_SNP [dm3] 2L_12841310_SNP [dm6]	G	A	1.970e^-5	0.152	UPSTREAM CR44971 EXON CR44970
2L	17868790	2L_17868790_SNP [dm3] 2L_17868790_SNP [dm6]	G	T	2.014e^-5	0.154	INTRON CadN2
2R	4758653	2R_4758653_SNP [dm3] 2R_8871148_SNP [dm6]	A	G	2.020e^-5	0.154	INTRON RyR
2L	11037087	2L_11037087_SNP [dm3] 2L_11037087_SNP [dm6]	A	G	2.025e^-5	0.154	INTRON Samuel
3R	513407	3R_513407_SNP [dm3] 3R_4687685_SNP [dm6]	T	C	2.029e^-5	0.154	INTRON CG43427
3L	13006416	3L_13006416_SNP [dm3] 3L_13013316_SNP [dm6]	G	A	2.059e^-5	0.156	SYNONYMOUS_CODING MICAL-like	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8889402	2L_8889402_SNP [dm3] 2L_8889402_SNP [dm6]	C	T	2.072e^-5	0.156	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	12842438	2L_12842438_SNP [dm3] 2L_12842438_SNP [dm6]	A	T	2.084e^-5	0.156	DOWNSTREAM CR44971 INTERGENIC
X	20462923	X_20462923_SNP [dm3] X_20591896_SNP [dm6]	A	G	2.100e^-5	0.157	UTR_3_PRIME RunxA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8570293	2L_8570293_SNP [dm3] 2L_8570293_SNP [dm6]	T	C	2.129e^-5	0.158	UPSTREAM tRNA:CR31895 INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9824569	3L_9824569_SNP [dm3] 3L_9831469_SNP [dm6]	T	C	2.150e^-5	0.159	INTRON CG43897	TF binding site mE1_TFBS_cad
2L	15340080	2L_15340080_SNP [dm3] 2L_15340080_SNP [dm6]	T	A	2.175e^-5	0.16	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9817478	3R_9817478_SNP [dm3] 3R_13991756_SNP [dm6]	C	G	2.178e^-5	0.16	INTRON rdx
3L	10090708	3L_10090708_SNP [dm3] 3L_10097608_SNP [dm6]	A	T	2.189e^-5	0.16	INTRON dpr6 & 1 other
3L	10090709	3L_10090709_DEL [dm3] 3L_10097609_DEL [dm6]	GC	G	2.189e^-5	0.16	INTRON dpr6 & 1 other
2L	12245805	2L_12245805_SNP [dm3] 2L_12245805_SNP [dm6]	A	C	2.195e^-5	0.16	INTRON aret
3L	10091449	3L_10091449_SNP [dm3] 3L_10098349_SNP [dm6]	C	T	2.225e^-5	0.16	UPSTREAM CG42825 INTRON dpr6
X	10400896	X_10400896_SNP [dm3] X_10506863_SNP [dm6]	C	G	2.232e^-5	0.16	INTRON spri
2R	15814647	2R_15814647_SNP [dm3] 2R_19927142_SNP [dm6]	A	C	2.235e^-5	0.16	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	10450461	2L_10450461_SNP [dm3] 2L_10450461_SNP [dm6]	T	A	2.238e^-5	0.16	DOWNSTREAM loh INTRON ppk10
2L	10924773	2L_10924773_SNP [dm3] 2L_10924773_SNP [dm6]	T	C	2.263e^-5	0.161	INTRON dpr2
3R	5940822	3R_5940822_SNP [dm3] 3R_10115100_SNP [dm6]	A	G	2.285e^-5	0.162	INTRON CG3940
X	1810299	X_1810299_SNP [dm3] X_1916266_SNP [dm6]	C	T	2.292e^-5	0.162	UTR_3_PRIME Rbcn-3B DOWNSTREAM Rbcn-3B INTRON mip130
X	13140874	X_13140874_SNP [dm3] X_13246841_SNP [dm6]	A	G	2.328e^-5	0.164	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	18668432	2L_18668432_SNP [dm3] 2L_18668432_SNP [dm6]	A	G	2.336e^-5	0.164	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18836445	2R_18836445_SNP [dm3] 2R_22948922_SNP [dm6]	G	T	2.343e^-5	0.164	INTERGENIC
3L	10090713	3L_10090713_SNP [dm3] 3L_10097613_SNP [dm6]	T	G	2.347e^-5	0.164	INTRON dpr6 & 1 other
2L	8884163	2L_8884163_SNP [dm3] 2L_8884163_SNP [dm6]	T	C	2.382e^-5	0.165	INTERGENIC
2L	14544975	2L_14544975_SNP [dm3] 2L_14544975_SNP [dm6]	C	G	2.382e^-5	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15483003	X_15483003_SNP [dm3] X_15588970_SNP [dm6]	C	T	2.402e^-5	0.166	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12677249	3R_12677249_SNP [dm3] 3R_16851527_SNP [dm6]	C	A	2.418e^-5	0.166	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	12293273	X_12293273_SNP [dm3] X_12399240_SNP [dm6]	T	G	2.422e^-5	0.166	INTERGENIC
2L	17868621	2L_17868621_SNP [dm3] 2L_17868621_SNP [dm6]	C	A	2.442e^-5	0.167	INTRON CadN2
2L	5060200	2L_5060200_SNP [dm3] 2L_5060200_SNP [dm6]	G	A	2.458e^-5	0.167	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
3R	14269408	3R_14269408_SNP [dm3] 3R_18443686_SNP [dm6]	C	A	2.483e^-5	0.168	INTRON fru
3L	10090716	3L_10090716_SNP [dm3] 3L_10097616_SNP [dm6]	C	A	2.544e^-5	0.172	INTRON dpr6 & 1 other
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	2.569e^-5	0.173	INTRON CG43143
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	2.590e^-5	0.173	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
2R	9409870	2R_9409870_SNP [dm3] 2R_13522365_SNP [dm6]	G	T	2.598e^-5	0.173	NON_SYNONYMOUS_CODING CG13331 INTRON Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	2.598e^-5	0.173	INTERGENIC
2L	17872903	2L_17872903_SNP [dm3] 2L_17872903_SNP [dm6]	C	T	2.616e^-5	0.173	INTRON CadN2
2L	10622994	2L_10622994_SNP [dm3] 2L_10622994_SNP [dm6]	T	C	2.628e^-5	0.173	INTRON Trim9
3R	14175624	3R_14175624_DEL [dm3] 3R_18349902_DEL [dm6]	GACAG	A	2.630e^-5	0.173	INTRON CG15803
2L	3937120	2L_3937120_SNP [dm3] 2L_3937120_SNP [dm6]	G	T	2.639e^-5	0.173	INTRON fred
X	11815569	X_11815569_INS [dm3] X_11921536_INS [dm6]	T	TAT	2.651e^-5	0.173	UPSTREAM CR32660 DOWNSTREAM Sclp INTRON Sclp
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	2.653e^-5	0.173	INTRON rgr	TF binding site mE1_TFBS_cad
3R	16104871	3R_16104871_DEL [dm3] 3R_20279149_DEL [dm6]	ACA	A	2.672e^-5	0.173	INTRON cic
2L	9600302	2L_9600302_SNP [dm3] 2L_9600302_SNP [dm6]	C	T	2.677e^-5	0.173	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15702474	3L_15702474_SNP [dm3] 3L_15709374_SNP [dm6]	T	C	2.692e^-5	0.173	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14728302	3R_14728302_SNP [dm3] 3R_18902580_SNP [dm6]	A	T	2.701e^-5	0.174	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
3R	14829606	3R_14829606_SNP [dm3] 3R_19003884_SNP [dm6]	A	G	2.718e^-5	0.174	INTRON gukh	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26374468	3R_26374468_SNP [dm3] 3R_30548746_SNP [dm6]	C	T	2.723e^-5	0.174	SYNONYMOUS_CODING tmod INTRON tmod
3R	20926568	3R_20926568_SNP [dm3] 3R_25100846_SNP [dm6]	G	C	2.752e^-5	0.175	SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10044141	3R_10044141_SNP [dm3] 3R_14218419_SNP [dm6]	G	A	2.767e^-5	0.175	SYNONYMOUS_CODING CG31326 UPSTREAM CG9649
2L	6102794	2L_6102794_SNP [dm3] 2L_6102794_SNP [dm6]	T	C	2.779e^-5	0.175	INTRON stai
X	1870969	X_1870969_SNP [dm3] X_1976936_SNP [dm6]	A	T	2.783e^-5	0.175	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
3L	8841301	3L_8841301_SNP [dm3] 3L_8848201_SNP [dm6]	G	A	2.785e^-5	0.175	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6102117	2L_6102117_DEL [dm3] 2L_6102117_DEL [dm6]	TGTT	T	2.793e^-5	0.175	INTRON stai
3L	18450365	3L_18450365_SNP [dm3] 3L_18457265_SNP [dm6]	C	T	2.834e^-5	0.176	UPSTREAM CR44670 EXON CR44671
2L	2611366	2L_2611366_SNP [dm3] 2L_2611366_SNP [dm6]	C	T	2.839e^-5	0.176	DOWNSTREAM CG15395 INTERGENIC
X	7037223	X_7037223_SNP [dm3] X_7143190_SNP [dm6]	G	C	2.840e^-5	0.176	INTRON CG9650
3L	15507853	3L_15507853_SNP [dm3] 3L_15514753_SNP [dm6]	G	C	2.850e^-5	0.176	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	15319447	2L_15319447_SNP [dm3] 2L_15319447_SNP [dm6]	A	G	2.868e^-5	0.176	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6102800	2L_6102800_SNP [dm3] 2L_6102800_SNP [dm6]	G	T	2.877e^-5	0.176	INTRON stai
2R	15114759	2R_15114759_DEL [dm3] 2R_19227254_DEL [dm6]	ATAATATGAAC...	A	2.931e^-5	0.179	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15232858	2L_15232858_DEL [dm3] 2L_15232858_DEL [dm6]	GGAG	G	2.953e^-5	0.18	INTRON ZnT35C	TF binding site mE1_TFBS_cad
3R	23853057	3R_23853057_SNP [dm3] 3R_28027335_SNP [dm6]	A	G	2.973e^-5	0.18	INTRON CG34362
2L	3937233	2L_3937233_SNP [dm3] 2L_3937233_SNP [dm6]	A	G	2.978e^-5	0.18	INTRON fred
2L	19947901	2L_19947901_SNP [dm3] 2L_19947901_SNP [dm6]	A	C	2.999e^-5	0.181	INTRON sick
X	7489772	X_7489772_SNP [dm3] X_7595739_SNP [dm6]	T	A	3.025e^-5	0.181	INTERGENIC	regulatory region REDfly_CRMs
X	10399804	X_10399804_SNP [dm3] X_10505771_SNP [dm6]	G	A	3.025e^-5	0.181	INTRON spri
3L	18437309	3L_18437309_SNP [dm3] 3L_18444209_SNP [dm6]	A	T	3.039e^-5	0.182	INTERGENIC
2L	12458406	2L_12458406_SNP [dm3] 2L_12458406_SNP [dm6]	C	T	3.060e^-5	0.182	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18437662	2R_18437662_SNP [dm3] 2R_22550157_SNP [dm6]	C	A	3.095e^-5	0.183	UTR_5_PRIME CG6018 INTRON px
3R	5694425	3R_5694425_SNP [dm3] 3R_9868703_SNP [dm6]	A	G	3.115e^-5	0.183	UPSTREAM Teh1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
X	17310920	X_17310920_SNP [dm3] X_17416887_SNP [dm6]	G	A	3.116e^-5	0.183	INTRON CG8611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13140884	X_13140884_DEL [dm3] X_13246851_DEL [dm6]	AA	A	3.117e^-5	0.183	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	8807599	X_8807599_SNP [dm3] X_8913566_SNP [dm6]	G	T	3.128e^-5	0.183	INTRON rdgA
2R	17376340	2R_17376340_SNP [dm3] 2R_21488835_SNP [dm6]	G	A	3.153e^-5	0.183	INTRON Fkbp14
X	17397181	X_17397181_DEL [dm3] X_17503148_DEL [dm6]	AA	A	3.153e^-5	0.183	INTRON CG43658	TF binding site BDTNP1_TFBS_twi
2L	17870833	2L_17870833_SNP [dm3] 2L_17870833_SNP [dm6]	C	A	3.157e^-5	0.183	INTRON CadN2
3L	7856728	3L_7856728_SNP [dm3] 3L_7863628_SNP [dm6]	C	T	3.169e^-5	0.183	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5076070	2L_5076070_SNP [dm3] 2L_5076070_SNP [dm6]	A	T	3.172e^-5	0.183	INTRON pgant5
X	9591086	X_9591086_SNP [dm3] X_9697053_SNP [dm6]	C	T	3.182e^-5	0.183	UTR_3_PRIME btd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18058001	2R_18058001_SNP [dm3] 2R_22170496_SNP [dm6]	G	A	3.207e^-5	0.184	SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12845293	2L_12845293_SNP [dm3] 2L_12845293_SNP [dm6]	T	C	3.219e^-5	0.184	INTERGENIC
2R	3787962	2R_3787962_SNP [dm3] 2R_7900457_SNP [dm6]	G	T	3.223e^-5	0.184	INTRON CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	21444276	X_21444276_DEL [dm3] X_21573249_DEL [dm6]	AA	A	3.229e^-5	0.184	INTERGENIC
X	9410128	X_9410128_SNP [dm3] X_9516095_SNP [dm6]	T	C	3.252e^-5	0.184	INTRON CG32700
2L	1069035	2L_1069035_SNP [dm3] 2L_1069035_SNP [dm6]	C	A	3.254e^-5	0.184	INTRON S	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	13928673	2L_13928673_SNP [dm3] 2L_13928673_SNP [dm6]	T	A	3.262e^-5	0.184	INTRON Ance-3
2L	8865279	2L_8865279_SNP [dm3] 2L_8865279_SNP [dm6]	C	T	3.273e^-5	0.184	SYNONYMOUS_CODING CG32988 UPSTREAM CG32983 DOWNSTREAM CG32987 EXON CR45260
2L	15349933	2L_15349933_SNP [dm3] 2L_15349933_SNP [dm6]	T	C	3.295e^-5	0.184	INTERGENIC
3R	25538958	3R_25538958_SNP [dm3] 3R_29713236_SNP [dm6]	T	A	3.308e^-5	0.185	DOWNSTREAM CR45569 INTERGENIC
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	3.349e^-5	0.186	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15349876	2L_15349876_SNP [dm3] 2L_15349876_SNP [dm6]	C	T	3.368e^-5	0.186	INTERGENIC
2L	16433339	2L_16433339_SNP [dm3] 2L_16433339_SNP [dm6]	A	C	3.374e^-5	0.186	INTRON CG5888
2L	15348728	2L_15348728_SNP [dm3] 2L_15348728_SNP [dm6]	T	A	3.394e^-5	0.186	INTERGENIC
2L	5141955	2L_5141955_SNP [dm3] 2L_5141955_SNP [dm6]	C	G	3.414e^-5	0.186	INTRON Msp300
X	16040191	X_16040191_SNP [dm3] X_16146158_SNP [dm6]	C	T	3.415e^-5	0.186	INTRON disco-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15347310	2L_15347310_SNP [dm3] 2L_15347310_SNP [dm6]	C	T	3.419e^-5	0.186	INTERGENIC
2L	2611307	2L_2611307_SNP [dm3] 2L_2611307_SNP [dm6]	A	G	3.422e^-5	0.186	DOWNSTREAM CG15395 INTERGENIC
X	21444253	X_21444253_SNP [dm3] X_21573226_SNP [dm6]	A	C	3.434e^-5	0.186	INTERGENIC
2L	15382307	2L_15382307_SNP [dm3] 2L_15382307_SNP [dm6]	A	T	3.440e^-5	0.186	INTERGENIC
X	10400248	X_10400248_INS [dm3] X_10506215_INS [dm6]	T	TA	3.448e^-5	0.186	INTRON spri
2L	6102770	2L_6102770_INS [dm3] 2L_6102770_INS [dm6]	A	ACCGA	3.470e^-5	0.187	INTRON stai
3L	18491600	3L_18491600_SNP [dm3] 3L_18498500_SNP [dm6]	T	C	3.522e^-5	0.187	INTRON AstC-R2
X	9410125	X_9410125_SNP [dm3] X_9516092_SNP [dm6]	C	T	3.523e^-5	0.187	INTRON CG32700
3R	2199069	3R_2199069_SNP [dm3] 3R_6373347_SNP [dm6]	T	G	3.525e^-5	0.187	NON_SYNONYMOUS_CODING CG1041	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10016616	3L_10016616_SNP [dm3] 3L_10023516_SNP [dm6]	A	G	3.526e^-5	0.187	INTRON dpr6
2R	18399763	2R_18399763_SNP [dm3] 2R_22512258_SNP [dm6]	G	A	3.530e^-5	0.187	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	76713	3L_76713_SNP [dm3] 3L_76713_SNP [dm6]	T	C	3.533e^-5	0.187	INTERGENIC
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	3.541e^-5	0.187	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
3R	1700394	3R_1700394_SNP [dm3] 3R_5874672_SNP [dm6]	C	T	3.549e^-5	0.187	INTRON CG34113
X	7456142	X_7456142_SNP [dm3] X_7562109_SNP [dm6]	G	A	3.555e^-5	0.187	DOWNSTREAM CR44502 INTERGENIC
2L	3937190	2L_3937190_SNP [dm3] 2L_3937190_SNP [dm6]	A	T	3.574e^-5	0.187	INTRON fred
3R	9817476	3R_9817476_SNP [dm3] 3R_13991754_SNP [dm6]	A	C	3.619e^-5	0.187	INTRON rdx
2L	11449506	2L_11449506_SNP [dm3] 2L_11449506_SNP [dm6]	T	C	3.623e^-5	0.187	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21204151	3L_21204151_SNP [dm3] 3L_21211051_SNP [dm6]	G	C	3.669e^-5	0.187	UPSTREAM CG10510 INTRON CG10508
3R	20540311	3R_20540311_SNP [dm3] 3R_24714589_SNP [dm6]	C	A	3.671e^-5	0.187	UPSTREAM CG13627 INTRON CG13627
2L	12820024	2L_12820024_SNP [dm3] 2L_12820024_SNP [dm6]	A	G	3.685e^-5	0.187	NON_SYNONYMOUS_CODING kek1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9430010	X_9430010_SNP [dm3] X_9535977_SNP [dm6]	A	G	3.689e^-5	0.187	INTRON CG32700
2L	3436602	2L_3436602_INS [dm3] 2L_3436602_INS [dm6]	A	AGTTTAT	3.700e^-5	0.187	INTERGENIC
2L	3436607	2L_3436607_DEL [dm3] 2L_3436607_DEL [dm6]	AA	T	3.700e^-5	0.187	INTERGENIC
2L	8889085	2L_8889085_SNP [dm3] 2L_8889085_SNP [dm6]	C	T	3.711e^-5	0.187	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
2L	5119308	2L_5119308_SNP [dm3] 2L_5119308_SNP [dm6]	G	A	3.712e^-5	0.187	INTRON Msp300
2L	8096035	2L_8096035_SNP [dm3] 2L_8096035_SNP [dm6]	G	A	3.713e^-5	0.187	INTRON Bsg
2L	8882496	2L_8882496_SNP [dm3] 2L_8882496_SNP [dm6]	G	A	3.719e^-5	0.187	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8882880	2L_8882880_SNP [dm3] 2L_8882880_SNP [dm6]	T	A	3.719e^-5	0.187	INTERGENIC
2L	8884463	2L_8884463_SNP [dm3] 2L_8884463_SNP [dm6]	T	C	3.719e^-5	0.187	INTERGENIC
3L	7087881	3L_7087881_INS [dm3] 3L_7094781_INS [dm6]	G	GCG	3.753e^-5	0.189	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	12377573	3L_12377573_INS [dm3] 3L_12384473_INS [dm6]	T	TGGTGCATGTAAGTACGTGA...	3.771e^-5	0.189	INTRON Ncc69
2L	12665586	2L_12665586_SNP [dm3] 2L_12665586_SNP [dm6]	G	T	3.796e^-5	0.19	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13926157	2L_13926157_SNP [dm3] 2L_13926157_SNP [dm6]	G	C	3.812e^-5	0.19	INTRON Ance-3
X	7490187	X_7490187_SNP [dm3] X_7596154_SNP [dm6]	C	A	3.844e^-5	0.191	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
2L	1040342	2L_1040342_SNP [dm3] 2L_1040342_SNP [dm6]	T	C	3.870e^-5	0.192	INTRON IA-2	TF binding site mE1_TFBS_chinmo
X	9083143	X_9083143_SNP [dm3] X_9189110_SNP [dm6]	G	A	3.888e^-5	0.192	UTR_3_PRIME mei-P26 DOWNSTREAM CG12115
2L	10833214	2L_10833214_SNP [dm3] 2L_10833214_SNP [dm6]	T	C	3.900e^-5	0.192	INTRON Nos
2R	7330338	2R_7330338_SNP [dm3] 2R_11442833_SNP [dm6]	T	G	3.920e^-5	0.192	UTR_5_PRIME qvr DOWNSTREAM CG7777
2L	17869172	2L_17869172_SNP [dm3] 2L_17869172_SNP [dm6]	T	C	3.923e^-5	0.192	INTRON CadN2
2L	18297473	2L_18297473_SNP [dm3] 2L_18297473_SNP [dm6]	A	T	3.934e^-5	0.192	DOWNSTREAM CG5790 INTERGENIC
2L	15337447	2L_15337447_SNP [dm3] 2L_15337447_SNP [dm6]	C	A	3.937e^-5	0.192	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18676884	2L_18676884_SNP [dm3] 2L_18676884_SNP [dm6]	C	T	3.944e^-5	0.192	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM CG31751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2640597	2L_2640597_SNP [dm3] 2L_2640597_SNP [dm6]	T	G	3.966e^-5	0.192	INTERGENIC
3R	23852452	3R_23852452_SNP [dm3] 3R_28026730_SNP [dm6]	A	T	3.971e^-5	0.192	UTR_5_PRIME CG34362
3R	15176947	3R_15176947_SNP [dm3] 3R_19351225_SNP [dm6]	A	G	3.996e^-5	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26466117	3R_26466117_SNP [dm3] 3R_30640395_SNP [dm6]	A	T	4.024e^-5	0.193	INTERGENIC
3R	23538958	3R_23538958_SNP [dm3] 3R_27713236_SNP [dm6]	G	A	4.043e^-5	0.193	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4851798	3R_4851798_SNP [dm3] 3R_9026076_SNP [dm6]	A	G	4.066e^-5	0.193	INTRON neur	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7856707	3L_7856707_SNP [dm3] 3L_7863607_SNP [dm6]	A	T	4.070e^-5	0.193	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10035053	3R_10035053_SNP [dm3] 3R_14209331_SNP [dm6]	G	A	4.070e^-5	0.193	INTRON Dop1R1
2L	11449504	2L_11449504_SNP [dm3] 2L_11449504_SNP [dm6]	A	T	4.071e^-5	0.193	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10045050	X_10045050_SNP [dm3] X_10151017_SNP [dm6]	G	A	4.086e^-5	0.193	INTRON CR44894
2R	3616409	2R_3616409_SNP [dm3] 2R_7728904_SNP [dm6]	A	G	4.098e^-5	0.193	NON_SYNONYMOUS_CODING CG18812
2L	11896059	2L_11896059_DEL [dm3] 2L_11896059_DEL [dm6]	AACGCGA	A	4.125e^-5	0.193	INTRON Pde1c
X	8837152	X_8837152_SNP [dm3] X_8943119_SNP [dm6]	G	T	4.128e^-5	0.193	INTRON rdgA
X	9185496	X_9185496_SNP [dm3] X_9291463_SNP [dm6]	T	G	4.128e^-5	0.193	INTRON lz
2L	8838775	2L_8838775_SNP [dm3] 2L_8838775_SNP [dm6]	G	T	4.139e^-5	0.193	INTERGENIC
2L	11449488	2L_11449488_SNP [dm3] 2L_11449488_SNP [dm6]	G	A	4.141e^-5	0.193	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13001180	X_13001180_MNP [dm3] X_13107147_MNP [dm6]	GAT	ATC	4.147e^-5	0.193	DOWNSTREAM Fer3HCH INTRON CG43313
2L	14552042	2L_14552042_SNP [dm3] 2L_14552042_SNP [dm6]	A	T	4.157e^-5	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14552047	2L_14552047_SNP [dm3] 2L_14552047_SNP [dm6]	C	G	4.157e^-5	0.193	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8096637	2L_8096637_SNP [dm3] 2L_8096637_SNP [dm6]	G	T	4.177e^-5	0.193	INTRON Bsg
3R	15515037	3R_15515037_SNP [dm3] 3R_19689315_SNP [dm6]	G	A	4.215e^-5	0.195	INTRON Naam
X	12718529	X_12718529_SNP [dm3] X_12824496_SNP [dm6]	A	C	4.253e^-5	0.196	INTRON Pde9
3R	13687017	3R_13687017_SNP [dm3] 3R_17861295_SNP [dm6]	A	G	4.301e^-5	0.197	INTRON tinc
2R	18956793	2R_18956793_SNP [dm3] 2R_23069270_SNP [dm6]	G	C	4.306e^-5	0.197	UPSTREAM l_2_k09913 INTRON l_2_k09913
X	19744565	X_19744565_SNP [dm3] X_19850532_SNP [dm6]	G	A	4.315e^-5	0.197	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3815712	2R_3815712_SNP [dm3] 2R_7928207_SNP [dm6]	G	T	4.322e^-5	0.197	SYNONYMOUS_CODING CG8791	TF binding site mE1_TFBS_cad
2R	17663631	2R_17663631_SNP [dm3] 2R_21776126_SNP [dm6]	T	C	4.356e^-5	0.198	INTERGENIC
X	14101901	X_14101901_SNP [dm3] X_14207868_SNP [dm6]	C	A	4.389e^-5	0.198	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	3937192	2L_3937192_SNP [dm3] 2L_3937192_SNP [dm6]	A	C	4.397e^-5	0.198	INTRON fred
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	4.400e^-5	0.198	INTRON CG43143
X	10441196	X_10441196_SNP [dm3] X_10547163_SNP [dm6]	A	C	4.417e^-5	0.198	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	6052903	3R_6052903_SNP [dm3] 3R_10227181_SNP [dm6]	A	G	4.420e^-5	0.198	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	5144810	2L_5144810_DEL [dm3] 2L_5144810_DEL [dm6]	GTGTATCTGGGAT...	G	4.421e^-5	0.198	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14869299	2R_14869299_SNP [dm3] 2R_18981794_SNP [dm6]	G	A	4.428e^-5	0.198	INTERGENIC
3R	791838	3R_791838_SNP [dm3] 3R_4966116_SNP [dm6]	A	T	4.446e^-5	0.198	INTRON CG1124	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	12456282	2L_12456282_SNP [dm3] 2L_12456282_SNP [dm6]	G	A	4.451e^-5	0.198	UTR_3_PRIME bun DOWNSTREAM bun
3R	4791827	3R_4791827_INS [dm3] 3R_8966105_INS [dm6]	T	TACA	4.470e^-5	0.199	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12174179	X_12174179_SNP [dm3] X_12280146_SNP [dm6]	T	G	4.499e^-5	0.199	INTRON Ten-a
2L	11591403	2L_11591403_SNP [dm3] 2L_11591403_SNP [dm6]	T	C	4.542e^-5	0.199	UTR_3_PRIME Acp33A INTRON kek2
3R	26373792	3R_26373792_SNP [dm3] 3R_30548070_SNP [dm6]	C	T	4.545e^-5	0.199	INTRON tmod
2L	12665636	2L_12665636_SNP [dm3] 2L_12665636_SNP [dm6]	C	G	4.548e^-5	0.199	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17877833	2L_17877833_SNP [dm3] 2L_17877833_SNP [dm6]	A	C	4.563e^-5	0.199	INTERGENIC
3L	18608921	3L_18608921_SNP [dm3] 3L_18615821_SNP [dm6]	C	G	4.576e^-5	0.199	UTR_5_PRIME CG4174 UTR_3_PRIME CG13380 DOWNSTREAM CG13380
2L	12207777	2L_12207777_SNP [dm3] 2L_12207777_SNP [dm6]	C	T	4.581e^-5	0.199	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2R	18399972	2R_18399972_SNP [dm3] 2R_22512467_SNP [dm6]	T	G	4.590e^-5	0.199	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15261513	3R_15261513_SNP [dm3] 3R_19435791_SNP [dm6]	A	G	4.593e^-5	0.199	INTRON CG31221
3R	14976767	3R_14976767_SNP [dm3] 3R_19151045_SNP [dm6]	G	T	4.593e^-5	0.199	INTRON CG5835
2L	17867776	2L_17867776_SNP [dm3] 2L_17867776_SNP [dm6]	C	G	4.629e^-5	0.199	INTRON CadN2
2R	18286944	2R_18286944_SNP [dm3] 2R_22399439_SNP [dm6]	A	G	4.630e^-5	0.199	INTRON babos	TF binding site BDTNP1_TFBS_dl
X	1839316	X_1839316_SNP [dm3] X_1945283_SNP [dm6]	A	G	4.630e^-5	0.199	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13092885	X_13092885_SNP [dm3] X_13198852_SNP [dm6]	G	A	4.635e^-5	0.199	SYNONYMOUS_CODING sno
2L	5144828	2L_5144828_SNP [dm3] 2L_5144828_SNP [dm6]	A	G	4.724e^-5	0.203	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12833666	2L_12833666_SNP [dm3] 2L_12833666_SNP [dm6]	G	A	4.731e^-5	0.203	INTERGENIC
2L	15304111	2L_15304111_SNP [dm3] 2L_15304111_SNP [dm6]	A	T	4.747e^-5	0.203	INTERGENIC
3L	18472271	3L_18472271_DEL [dm3] 3L_18479171_DEL [dm6]	TT	T	4.774e^-5	0.203	EXON CR44673
2L	3675493	2L_3675493_SNP [dm3] 2L_3675493_SNP [dm6]	A	G	4.777e^-5	0.203	INTRON CG34340
3L	8841870	3L_8841870_DEL [dm3] 3L_8848770_DEL [dm6]	CAT	C	4.779e^-5	0.203	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5363515	3R_5363515_SNP [dm3] 3R_9537793_SNP [dm6]	T	G	4.792e^-5	0.203	UTR_3_PRIME mura DOWNSTREAM mura
3R	6303049	3R_6303049_SNP [dm3] 3R_10477327_SNP [dm6]	G	A	4.798e^-5	0.203	INTERGENIC
X	12174178	X_12174178_SNP [dm3] X_12280145_SNP [dm6]	T	G	4.805e^-5	0.203	INTRON Ten-a
X	12718500	X_12718500_SNP [dm3] X_12824467_SNP [dm6]	T	G	4.854e^-5	0.204	INTRON Pde9
3L	9148713	3L_9148713_SNP [dm3] 3L_9155613_SNP [dm6]	A	T	4.862e^-5	0.204	INTRON Rdl	TF binding site mE1_TFBS_HSA
2R	19125117	2R_19125117_SNP [dm3] 2R_23237594_SNP [dm6]	G	C	4.866e^-5	0.204	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15114735	2R_15114735_SNP [dm3] 2R_19227230_SNP [dm6]	T	A	4.894e^-5	0.204	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26373332	3R_26373332_SNP [dm3] 3R_30547610_SNP [dm6]	C	T	4.915e^-5	0.204	INTRON tmod
3L	18478967	3L_18478967_SNP [dm3] 3L_18485867_SNP [dm6]	G	C	4.916e^-5	0.204	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	5411648	3R_5411648_SNP [dm3] 3R_9585926_SNP [dm6]	C	T	4.918e^-5	0.204	INTRON CG8301
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	4.960e^-5	0.205	INTRON TfAP-2
2L	17872830	2L_17872830_SNP [dm3] 2L_17872830_SNP [dm6]	A	G	5.080e^-5	0.21	INTRON CadN2
2R	17367584	2R_17367584_SNP [dm3] 2R_21480079_SNP [dm6]	T	G	5.089e^-5	0.21	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3436550	2L_3436550_SNP [dm3] 2L_3436550_SNP [dm6]	T	C	5.105e^-5	0.21	INTERGENIC
3R	19017237	3R_19017237_SNP [dm3] 3R_23191515_SNP [dm6]	C	T	5.125e^-5	0.21	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	10274015	X_10274015_SNP [dm3] X_10379982_SNP [dm6]	T	C	5.155e^-5	0.211	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	9080683	2L_9080683_SNP [dm3] 2L_9080683_SNP [dm6]	C	A	5.158e^-5	0.211	INTERGENIC
2L	3436563	2L_3436563_INS [dm3] 2L_3436563_INS [dm6]	A	ATATGC	5.175e^-5	0.211	INTERGENIC
3L	12866309	3L_12866309_SNP [dm3] 3L_12873209_SNP [dm6]	T	A	5.183e^-5	0.211	INTERGENIC
3R	10044201	3R_10044201_SNP [dm3] 3R_14218479_SNP [dm6]	T	A	5.192e^-5	0.211	SYNONYMOUS_CODING CG31326 UPSTREAM CG9649
3R	4265618	3R_4265618_SNP [dm3] 3R_8439896_SNP [dm6]	C	G	5.207e^-5	0.211	INTRON CG45263
X	1839358	X_1839358_SNP [dm3] X_1945325_SNP [dm6]	A	T	5.239e^-5	0.211	INTRON Hr4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12723050	X_12723050_SNP [dm3] X_12829017_SNP [dm6]	T	C	5.240e^-5	0.211	INTRON Pde9
2L	13928655	2L_13928655_SNP [dm3] 2L_13928655_SNP [dm6]	A	G	5.255e^-5	0.212	INTRON Ance-3
X	12174185	X_12174185_SNP [dm3] X_12280152_SNP [dm6]	T	G	5.282e^-5	0.212	INTRON Ten-a
2L	3436570	2L_3436570_MNP [dm3] 2L_3436570_MNP [dm6]	TTA	CAT	5.291e^-5	0.212	INTERGENIC
3R	5221986	3R_5221986_SNP [dm3] 3R_9396264_SNP [dm6]	A	C	5.293e^-5	0.212	INTERGENIC
2R	16491199	2R_16491199_SNP [dm3] 2R_20603694_SNP [dm6]	C	T	5.318e^-5	0.212	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12677497	3R_12677497_SNP [dm3] 3R_16851775_SNP [dm6]	C	A	5.387e^-5	0.214	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	5.391e^-5	0.214	DOWNSTREAM CR44415 INTERGENIC
2L	4826801	2L_4826801_SNP [dm3] 2L_4826801_SNP [dm6]	G	A	5.398e^-5	0.214	SYNONYMOUS_CODING CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15283891	3L_15283891_SNP [dm3] 3L_15290791_SNP [dm6]	C	A	5.398e^-5	0.214	INTERGENIC	TF binding site mE1_TFBS_inv
2R	5340714	2R_5340714_SNP [dm3] 2R_9453209_SNP [dm6]	G	C	5.421e^-5	0.214	DOWNSTREAM CG33758 INTRON Camta
3L	3941269	3L_3941269_SNP [dm3] 3L_3941269_SNP [dm6]	T	G	5.425e^-5	0.214	SYNONYMOUS_CODING CG10863 EXON CR43916
3L	9644648	3L_9644648_SNP [dm3] 3L_9651548_SNP [dm6]	A	G	5.503e^-5	0.215	INTRON fry & 1 other
X	20023978	X_20023978_SNP [dm3] X_20129945_SNP [dm6]	G	T	5.521e^-5	0.215	DOWNSTREAM CG42582 INTERGENIC	TF binding site mE1_TFBS_inv
2L	16815637	2L_16815637_SNP [dm3] 2L_16815637_SNP [dm6]	G	C	5.523e^-5	0.215	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
2L	15210914	2L_15210914_SNP [dm3] 2L_15210914_SNP [dm6]	G	A	5.536e^-5	0.215	INTERGENIC
3R	16104290	3R_16104290_SNP [dm3] 3R_20278568_SNP [dm6]	G	T	5.542e^-5	0.215	INTRON cic	TF binding site mE1_TFBS_inv
3L	7856664	3L_7856664_INS [dm3] 3L_7863564_INS [dm6]	T	TCT	5.544e^-5	0.215	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14536354	X_14536354_SNP [dm3] X_14642321_SNP [dm6]	A	C	5.545e^-5	0.215	INTRON NetA
X	10272657	X_10272657_SNP [dm3] X_10378624_SNP [dm6]	A	G	5.549e^-5	0.215	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	18071828	2R_18071828_SNP [dm3] 2R_22184323_SNP [dm6]	A	G	5.558e^-5	0.215	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8096623	2L_8096623_SNP [dm3] 2L_8096623_SNP [dm6]	A	G	5.631e^-5	0.215	INTRON Bsg
2R	6767731	2R_6767731_SNP [dm3] 2R_10880226_SNP [dm6]	T	A	5.648e^-5	0.215	UTR_5_PRIME Pex6 UPSTREAM Taf5 INTRON Pex6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	6769708	2R_6769708_SNP [dm3] 2R_10882203_SNP [dm6]	C	T	5.648e^-5	0.215	SYNONYMOUS_CODING Pex6	TF binding site mE1_TFBS_sens
X	11044878	X_11044878_SNP [dm3] X_11150845_SNP [dm6]	T	C	5.652e^-5	0.215	SYNONYMOUS_CODING Lint-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7842064	2R_7842064_SNP [dm3] 2R_11954559_SNP [dm6]	A	C	5.654e^-5	0.215	INTRON CG13188
3L	5103187	3L_5103187_SNP [dm3] 3L_5103187_SNP [dm6]	C	T	5.659e^-5	0.215	INTERGENIC
2L	17858175	2L_17858175_DEL [dm3] 2L_17858175_DEL [dm6]	AA	A	5.659e^-5	0.215	INTRON CadN2
2R	16356392	2R_16356392_SNP [dm3] 2R_20468887_SNP [dm6]	T	A	5.662e^-5	0.215	SPLICE_SITE_REGION CG12484 INTRON CG12484
2L	15276700	2L_15276700_SNP [dm3] 2L_15276700_SNP [dm6]	G	A	5.665e^-5	0.215	INTERGENIC
3R	4568243	3R_4568243_SNP [dm3] 3R_8742521_SNP [dm6]	C	A	5.672e^-5	0.215	INTRON CG9801
X	8807660	X_8807660_SNP [dm3] X_8913627_SNP [dm6]	G	C	5.702e^-5	0.215	INTRON rdgA
2L	2373457	2L_2373457_INS [dm3] 2L_2373457_INS [dm6]	T	TC	5.703e^-5	0.215	INTRON CG3609	TF binding site mE1_TFBS_cad
X	10841844	X_10841844_SNP [dm3] X_10947811_SNP [dm6]	C	A	5.712e^-5	0.215	NON_SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10211407	X_10211407_SNP [dm3] X_10317374_SNP [dm6]	C	T	5.723e^-5	0.215	INTRON alpha-Man-I
3L	22500861	3L_22500861_SNP [dm3] 3L_22507761_SNP [dm6]	C	A	5.732e^-5	0.215	INTERGENIC
2L	7806906	2L_7806906_SNP [dm3] 2L_7806906_SNP [dm6]	C	T	5.745e^-5	0.215	SYNONYMOUS_CODING cdc14
2L	18673259	2L_18673259_SNP [dm3] 2L_18673259_SNP [dm6]	T	C	5.753e^-5	0.215	UTR_5_PRIME CG43339 DOWNSTREAM Mst36Fb
2L	17857402	2L_17857402_SNP [dm3] 2L_17857402_SNP [dm6]	C	A	5.780e^-5	0.215	INTRON CadN2
2L	16429671	2L_16429671_SNP [dm3] 2L_16429671_SNP [dm6]	G	T	5.799e^-5	0.215	INTRON CG5888
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	5.813e^-5	0.215	UPSTREAM CR43769 INTERGENIC
2L	615879	2L_615879_SNP [dm3] 2L_615879_SNP [dm6]	G	T	5.837e^-5	0.215	INTERGENIC
X	16095942	X_16095942_SNP [dm3] X_16201909_SNP [dm6]	A	T	5.839e^-5	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8841787	3L_8841787_SNP [dm3] 3L_8848687_SNP [dm6]	T	C	5.874e^-5	0.215	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	5.898e^-5	0.215	INTRON spri
2L	8567167	2L_8567167_SNP [dm3] 2L_8567167_SNP [dm6]	T	A	5.912e^-5	0.215	INTRON Sema-1a
X	10401914	X_10401914_DEL [dm3] X_10507881_DEL [dm6]	CC	C	5.930e^-5	0.215	INTRON spri
3R	26373565	3R_26373565_SNP [dm3] 3R_30547843_SNP [dm6]	G	A	5.931e^-5	0.215	INTRON tmod
2L	9086541	2L_9086541_SNP [dm3] 2L_9086541_SNP [dm6]	C	T	5.933e^-5	0.215	NON_SYNONYMOUS_CODING Toll-4
3R	16104308	3R_16104308_SNP [dm3] 3R_20278586_SNP [dm6]	A	T	5.952e^-5	0.215	INTRON cic	TF binding site mE1_TFBS_inv
2L	5141625	2L_5141625_SNP [dm3] 2L_5141625_SNP [dm6]	A	C	5.979e^-5	0.215	INTRON Msp300
3L	842464	3L_842464_SNP [dm3] 3L_842464_SNP [dm6]	C	G	5.980e^-5	0.215	NON_SYNONYMOUS_CODING Gr61a SYNONYMOUS_CODING Gr61a
2L	8567132	2L_8567132_SNP [dm3] 2L_8567132_SNP [dm6]	C	T	5.980e^-5	0.215	INTRON Sema-1a
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	6.031e^-5	0.215	INTERGENIC
3R	14603829	3R_14603829_SNP [dm3] 3R_18778107_SNP [dm6]	G	A	6.045e^-5	0.215	INTRON CG7720
3R	26380221	3R_26380221_SNP [dm3] 3R_30554499_SNP [dm6]	T	C	6.049e^-5	0.215	DOWNSTREAM CG34155 INTRON tmod
2L	11036277	2L_11036277_SNP [dm3] 2L_11036277_SNP [dm6]	A	G	6.057e^-5	0.215	SPLICE_SITE_REGION Samuel DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
2L	6508374	2L_6508374_SNP [dm3] 2L_6508374_SNP [dm6]	T	C	6.063e^-5	0.215	INTRON CG31637 EXON CR44775	TF binding site BDTNP1_TFBS_hb
2R	4740779	2R_4740779_SNP [dm3] 2R_8853274_SNP [dm6]	C	T	6.098e^-5	0.215	UTR_3_PRIME sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5801499	2L_5801499_SNP [dm3] 2L_5801499_SNP [dm6]	G	T	6.103e^-5	0.215	NON_SYNONYMOUS_CODING CG14005 UPSTREAM CG7239	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	18857287	3L_18857287_SNP [dm3] 3L_18864187_SNP [dm6]	A	G	6.121e^-5	0.215	UPSTREAM CG6865 INTRON CG6865
3L	79204	3L_79204_SNP [dm3] 3L_79204_SNP [dm6]	G	T	6.128e^-5	0.215	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1741360	2R_1741360_SNP [dm3] 2R_5853855_SNP [dm6]	C	T	6.131e^-5	0.215	INTRON dpr12
X	10443207	X_10443207_SNP [dm3] X_10549174_SNP [dm6]	A	T	6.144e^-5	0.215	INTRON spri
X	20481025	X_20481025_SNP [dm3] X_20609998_SNP [dm6]	G	A	6.151e^-5	0.215	INTRON RunxA
2R	3797909	2R_3797909_SNP [dm3] 2R_7910404_SNP [dm6]	C	A	6.154e^-5	0.215	INTRON CG30377
2R	4758482	2R_4758482_SNP [dm3] 2R_8870977_SNP [dm6]	C	T	6.155e^-5	0.215	SYNONYMOUS_CODING RyR INTRON RyR
2L	11449482	2L_11449482_SNP [dm3] 2L_11449482_SNP [dm6]	G	A	6.156e^-5	0.215	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18857173	3L_18857173_SNP [dm3] 3L_18864073_SNP [dm6]	A	G	6.195e^-5	0.215	UPSTREAM CG6865 INTRON CG6865
3L	12504954	3L_12504954_SNP [dm3] 3L_12511854_SNP [dm6]	T	C	6.197e^-5	0.215	INTRON sti
3R	5427721	3R_5427721_SNP [dm3] 3R_9601999_SNP [dm6]	C	G	6.211e^-5	0.215	INTRON CG8312
3R	5427722	3R_5427722_SNP [dm3] 3R_9602000_SNP [dm6]	C	A	6.211e^-5	0.215	INTRON CG8312
3R	23852904	3R_23852904_SNP [dm3] 3R_28027182_SNP [dm6]	A	C	6.211e^-5	0.215	INTRON CG34362
2R	14108724	2R_14108724_SNP [dm3] 2R_18221219_SNP [dm6]	C	T	6.219e^-5	0.215	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18071810	2R_18071810_SNP [dm3] 2R_22184305_SNP [dm6]	G	A	6.232e^-5	0.215	SYNONYMOUS_CODING MED16	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16928924	3R_16928924_SNP [dm3] 3R_21103202_SNP [dm6]	T	A	6.233e^-5	0.215	INTRON CG5745	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	10280202	X_10280202_DEL [dm3] X_10386169_DEL [dm6]	TT	T	6.273e^-5	0.215	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10090719	3L_10090719_INS [dm3] 3L_10097619_INS [dm6]	C	GCTAGTA	6.290e^-5	0.215	INTRON dpr6 & 1 other
2L	16430686	2L_16430686_SNP [dm3] 2L_16430686_SNP [dm6]	T	C	6.297e^-5	0.215	INTRON CG5888
X	20480981	X_20480981_SNP [dm3] X_20609954_SNP [dm6]	C	T	6.305e^-5	0.215	INTRON RunxA
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	6.309e^-5	0.215	INTRON 5-HT1A
2L	3117121	2L_3117121_SNP [dm3] 2L_3117121_SNP [dm6]	G	A	6.319e^-5	0.215	INTRON toc
3R	24134285	3R_24134285_SNP [dm3] 3R_28308563_SNP [dm6]	C	T	6.322e^-5	0.215	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22027836	3R_22027836_SNP [dm3] 3R_26202114_SNP [dm6]	A	G	6.327e^-5	0.215	INTRON CR44320
X	7472622	X_7472622_SNP [dm3] X_7578589_SNP [dm6]	T	C	6.330e^-5	0.215	INTERGENIC	regulatory region REDfly_CRMs
3L	18860137	3L_18860137_SNP [dm3] 3L_18867037_SNP [dm6]	C	T	6.347e^-5	0.215	SYNONYMOUS_CODING CG14074 UPSTREAM Dysb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18860140	3L_18860140_SNP [dm3] 3L_18867040_SNP [dm6]	G	A	6.347e^-5	0.215	SYNONYMOUS_CODING CG14074 UPSTREAM Dysb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7310436	X_7310436_SNP [dm3] X_7416403_SNP [dm6]	C	T	6.356e^-5	0.215	UPSTREAM CG34337 INTERGENIC
2L	16430361	2L_16430361_SNP [dm3] 2L_16430361_SNP [dm6]	T	A	6.359e^-5	0.215	INTRON CG5888
2L	12845299	2L_12845299_SNP [dm3] 2L_12845299_SNP [dm6]	C	T	6.370e^-5	0.215	INTERGENIC
3L	10090728	3L_10090728_SNP [dm3] 3L_10097628_SNP [dm6]	C	A	6.376e^-5	0.215	INTRON dpr6 & 1 other
3R	7178120	3R_7178120_SNP [dm3] 3R_11352398_SNP [dm6]	G	C	6.376e^-5	0.215	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18857281	3L_18857281_SNP [dm3] 3L_18864181_SNP [dm6]	T	A	6.387e^-5	0.215	UPSTREAM CG6865 INTRON CG6865
X	12232949	X_12232949_SNP [dm3] X_12338916_SNP [dm6]	C	T	6.394e^-5	0.215	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12490046	2L_12490046_SNP [dm3] 2L_12490046_SNP [dm6]	A	G	6.403e^-5	0.215	INTRON bun
3R	5162097	3R_5162097_SNP [dm3] 3R_9336375_SNP [dm6]	T	C	6.414e^-5	0.215	INTRON CG8121
3L	15504913	3L_15504913_SNP [dm3] 3L_15511813_SNP [dm6]	A	C	6.421e^-5	0.215	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18672306	2L_18672306_SNP [dm3] 2L_18672306_SNP [dm6]	A	T	6.466e^-5	0.215	INTRON CG43339
3L	9644676	3L_9644676_SNP [dm3] 3L_9651576_SNP [dm6]	C	T	6.468e^-5	0.215	INTRON fry & 1 other
2L	9082542	2L_9082542_SNP [dm3] 2L_9082542_SNP [dm6]	T	C	6.495e^-5	0.216	INTERGENIC
X	20481437	X_20481437_SNP [dm3] X_20610410_SNP [dm6]	G	A	6.513e^-5	0.216	INTRON RunxA
X	20959606	X_20959606_SNP [dm3] X_21088579_SNP [dm6]	C	T	6.569e^-5	0.217	INTERGENIC
3L	21601798	3L_21601798_SNP [dm3] 3L_21608698_SNP [dm6]	A	G	6.580e^-5	0.217	INTRON TfAP-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7470776	X_7470776_SNP [dm3] X_7576743_SNP [dm6]	C	T	6.581e^-5	0.217	UTR_3_PRIME CG11369	regulatory region REDfly_CRMs
2L	12843046	2L_12843046_SNP [dm3] 2L_12843046_SNP [dm6]	A	G	6.582e^-5	0.217	INTERGENIC
3R	15177029	3R_15177029_SNP [dm3] 3R_19351307_SNP [dm6]	A	G	6.599e^-5	0.217	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12841831	2L_12841831_DEL [dm3] 2L_12841831_DEL [dm6]	CCCAGTTGAGC...	C	6.627e^-5	0.217	DOWNSTREAM CR44970 EXON CR44971
3R	16104266	3R_16104266_SNP [dm3] 3R_20278544_SNP [dm6]	C	G	6.645e^-5	0.217	INTRON cic	TF binding site mE1_TFBS_inv
3L	18482150	3L_18482150_SNP [dm3] 3L_18489050_SNP [dm6]	A	G	6.651e^-5	0.217	INTRON AstC-R2
2L	12827921	2L_12827921_SNP [dm3] 2L_12827921_SNP [dm6]	A	G	6.655e^-5	0.217	INTERGENIC
X	10272651	X_10272651_SNP [dm3] X_10378618_SNP [dm6]	A	G	6.697e^-5	0.218	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	16030402	3L_16030402_SNP [dm3] 3L_16037302_SNP [dm6]	A	T	6.731e^-5	0.219	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	17496682	X_17496682_SNP [dm3] X_17602649_SNP [dm6]	G	T	6.732e^-5	0.219	SYNONYMOUS_CODING X11L
X	21083710	X_21083710_SNP [dm3] X_21212683_SNP [dm6]	G	T	6.744e^-5	0.219	INTRON CG32521
X	20550773	X_20550773_SNP [dm3] X_20679746_SNP [dm6]	A	T	6.768e^-5	0.219	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	615874	2L_615874_SNP [dm3] 2L_615874_SNP [dm6]	T	C	6.808e^-5	0.219	INTERGENIC
3L	15505091	3L_15505091_SNP [dm3] 3L_15511991_SNP [dm6]	C	T	6.833e^-5	0.219	START_GAINED Eip71CD UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13487080	3R_13487080_SNP [dm3] 3R_17661358_SNP [dm6]	C	T	6.833e^-5	0.219	NON_SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16429759	2L_16429759_SNP [dm3] 2L_16429759_SNP [dm6]	T	A	6.853e^-5	0.219	INTRON CG5888
2L	16430577	2L_16430577_SNP [dm3] 2L_16430577_SNP [dm6]	G	T	6.853e^-5	0.219	INTRON CG5888
2L	16430642	2L_16430642_SNP [dm3] 2L_16430642_SNP [dm6]	C	T	6.853e^-5	0.219	INTRON CG5888
X	12694507	X_12694507_DEL [dm3] X_12800474_DEL [dm6]	CTC	C	6.861e^-5	0.219	INTRON Pde9
2L	12827931	2L_12827931_INS [dm3] 2L_12827931_INS [dm6]	T	TT	6.878e^-5	0.219	INTERGENIC
3R	6441890	3R_6441890_SNP [dm3] 3R_10616168_SNP [dm6]	G	C	6.897e^-5	0.219	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	7035046	X_7035046_SNP [dm3] X_7141013_SNP [dm6]	T	A	6.909e^-5	0.219	INTRON CG9650
3R	7476534	3R_7476534_SNP [dm3] 3R_11650812_SNP [dm6]	A	G	6.933e^-5	0.219	UPSTREAM Elp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15483983	X_15483983_DEL [dm3] X_15589950_DEL [dm6]	GG	G	6.938e^-5	0.219	DOWNSTREAM CG8105 INTRON CG9220
3L	18857196	3L_18857196_SNP [dm3] 3L_18864096_SNP [dm6]	A	G	6.939e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
X	19904667	X_19904667_SNP [dm3] X_20010634_SNP [dm6]	G	A	6.956e^-5	0.219	INTRON Dop2R
3R	16106743	3R_16106743_SNP [dm3] 3R_20281021_SNP [dm6]	G	A	6.956e^-5	0.219	INTRON cic	TF binding site mE1_TFBS_Kr
2L	12814382	2L_12814382_SNP [dm3] 2L_12814382_SNP [dm6]	G	A	6.964e^-5	0.219	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11109480	3L_11109480_SNP [dm3] 3L_11116380_SNP [dm6]	T	C	6.980e^-5	0.219	INTRON fd68A
2L	5079419	2L_5079419_SNP [dm3] 2L_5079419_SNP [dm6]	C	T	7.016e^-5	0.219	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	76712	3L_76712_SNP [dm3] 3L_76712_SNP [dm6]	A	C	7.036e^-5	0.219	INTERGENIC
2L	4288017	2L_4288017_SNP [dm3] 2L_4288017_SNP [dm6]	T	C	7.044e^-5	0.219	INTRON tutl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1879517	3L_1879517_SNP [dm3] 3L_1879517_SNP [dm6]	G	T	7.053e^-5	0.219	INTRON CG13937
3R	19231746	3R_19231746_SNP [dm3] 3R_23406024_SNP [dm6]	A	C	7.053e^-5	0.219	DOWNSTREAM Ir94d INTRON Ir94e
X	15452358	X_15452358_SNP [dm3] X_15558325_SNP [dm6]	T	G	7.121e^-5	0.219	INTERGENIC
3L	16030689	3L_16030689_SNP [dm3] 3L_16037589_SNP [dm6]	A	C	7.139e^-5	0.219	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3R	23861344	3R_23861344_SNP [dm3] 3R_28035622_SNP [dm6]	A	C	7.140e^-5	0.219	INTRON CG34362	TF binding site mE1_TFBS_sbb
3R	1291319	3R_1291319_SNP [dm3] 3R_5465597_SNP [dm6]	C	A	7.162e^-5	0.219	UPSTREAM PEK DOWNSTREAM RpL35A INTERGENIC
2R	8183605	2R_8183605_SNP [dm3] 2R_12296100_SNP [dm6]	C	A	7.177e^-5	0.219	DOWNSTREAM CR45271 INTRON CG42700
2R	19138692	2R_19138692_SNP [dm3] 2R_23251169_SNP [dm6]	C	A	7.189e^-5	0.219	INTERGENIC
2L	14035975	2L_14035975_SNP [dm3] 2L_14035975_SNP [dm6]	A	T	7.191e^-5	0.219	EXON CR45284
3L	16030492	3L_16030492_SNP [dm3] 3L_16037392_SNP [dm6]	T	A	7.196e^-5	0.219	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	9890286	2L_9890286_SNP [dm3] 2L_9890286_SNP [dm6]	T	C	7.218e^-5	0.219	SYNONYMOUS_CODING CG34183 UPSTREAM CG4537 DOWNSTREAM FKBP59 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6399488	X_6399488_SNP [dm3] X_6505455_SNP [dm6]	T	C	7.222e^-5	0.219	INTRON CG42340
2R	7426834	2R_7426834_SNP [dm3] 2R_11539329_SNP [dm6]	A	T	7.244e^-5	0.219	INTERGENIC
3L	15503434	3L_15503434_SNP [dm3] 3L_15510334_SNP [dm6]	A	G	7.249e^-5	0.219	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	18857271	3L_18857271_SNP [dm3] 3L_18864171_SNP [dm6]	G	T	7.263e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
X	12927347	X_12927347_SNP [dm3] X_13033314_SNP [dm6]	G	T	7.300e^-5	0.219	SYNONYMOUS_CODING rad	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	10269852	X_10269852_SNP [dm3] X_10375819_SNP [dm6]	G	A	7.312e^-5	0.219	NON_SYNONYMOUS_CODING CG2898 UPSTREAM CG32686 DOWNSTREAM CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
3L	18447380	3L_18447380_SNP [dm3] 3L_18454280_SNP [dm6]	T	C	7.314e^-5	0.219	INTERGENIC
3L	18447381	3L_18447381_SNP [dm3] 3L_18454281_SNP [dm6]	T	A	7.314e^-5	0.219	INTERGENIC
X	14536353	X_14536353_SNP [dm3] X_14642320_SNP [dm6]	A	C	7.317e^-5	0.219	INTRON NetA
2L	5188939	2L_5188939_SNP [dm3] 2L_5188939_SNP [dm6]	G	A	7.322e^-5	0.219	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15304090	2L_15304090_SNP [dm3] 2L_15304090_SNP [dm6]	G	A	7.333e^-5	0.219	INTERGENIC
3R	1805665	3R_1805665_SNP [dm3] 3R_5979943_SNP [dm6]	G	A	7.343e^-5	0.219	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19317141	X_19317141_SNP [dm3] X_19423108_SNP [dm6]	T	C	7.382e^-5	0.219	INTRON kek5
3R	4285076	3R_4285076_SNP [dm3] 3R_8459354_SNP [dm6]	C	A	7.397e^-5	0.219	INTRON CG45263
3R	15261279	3R_15261279_SNP [dm3] 3R_19435557_SNP [dm6]	C	T	7.404e^-5	0.219	INTRON CG31221
3R	20530058	3R_20530058_SNP [dm3] 3R_24704336_SNP [dm6]	T	A	7.410e^-5	0.219	INTRON slo
3R	15258839	3R_15258839_SNP [dm3] 3R_19433117_SNP [dm6]	T	C	7.414e^-5	0.219	INTRON CG31221
3R	6441942	3R_6441942_SNP [dm3] 3R_10616220_SNP [dm6]	G	A	7.433e^-5	0.219	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4791824	3R_4791824_INS [dm3] 3R_8966102_INS [dm6]	A	ATT	7.446e^-5	0.219	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9812686	3R_9812686_SNP [dm3] 3R_13986964_SNP [dm6]	C	G	7.449e^-5	0.219	INTRON rdx	TF binding site mE1_TFBS_Trl
2L	6124789	2L_6124789_SNP [dm3] 2L_6124789_SNP [dm6]	C	T	7.461e^-5	0.219	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
2R	17367547	2R_17367547_SNP [dm3] 2R_21480042_SNP [dm6]	G	A	7.461e^-5	0.219	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
X	10971896	X_10971896_SNP [dm3] X_11077863_SNP [dm6]	T	C	7.465e^-5	0.219	INTRON sev	TF binding site mE1_TFBS_chinmo
3L	18857269	3L_18857269_SNP [dm3] 3L_18864169_SNP [dm6]	A	T	7.492e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
X	13019956	X_13019956_INS [dm3] X_13125923_INS [dm6]	C	ATCACACGA	7.497e^-5	0.219	INTRON CG32638
2L	12191346	2L_12191346_SNP [dm3] 2L_12191346_SNP [dm6]	C	T	7.543e^-5	0.219	INTRON aret
3L	18857225	3L_18857225_SNP [dm3] 3L_18864125_SNP [dm6]	C	A	7.557e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
3L	18857228	3L_18857228_SNP [dm3] 3L_18864128_SNP [dm6]	G	A	7.557e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
3L	18857291	3L_18857291_SNP [dm3] 3L_18864191_SNP [dm6]	A	T	7.557e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
3L	18857305	3L_18857305_SNP [dm3] 3L_18864205_SNP [dm6]	C	T	7.557e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
3L	18857308	3L_18857308_SNP [dm3] 3L_18864208_SNP [dm6]	C	T	7.557e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
3L	18860207	3L_18860207_SNP [dm3] 3L_18867107_SNP [dm6]	A	C	7.557e^-5	0.219	NON_SYNONYMOUS_CODING CG14074 UPSTREAM Dysb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	14062871	3L_14062871_SNP [dm3] 3L_14069771_SNP [dm6]	A	G	7.562e^-5	0.219	INTRON CG32138
3R	12676555	3R_12676555_SNP [dm3] 3R_16850833_SNP [dm6]	C	G	7.564e^-5	0.219	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
2L	15341389	2L_15341389_SNP [dm3] 2L_15341389_SNP [dm6]	T	C	7.570e^-5	0.219	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14062589	3L_14062589_SNP [dm3] 3L_14069489_SNP [dm6]	C	T	7.572e^-5	0.219	INTRON CG32138
3R	16104281	3R_16104281_SNP [dm3] 3R_20278559_SNP [dm6]	T	G	7.578e^-5	0.219	INTRON cic	TF binding site mE1_TFBS_inv
3L	18857300	3L_18857300_SNP [dm3] 3L_18864200_SNP [dm6]	C	T	7.588e^-5	0.219	UPSTREAM CG6865 INTRON CG6865
2R	6239109	2R_6239109_SNP [dm3] 2R_10351604_SNP [dm6]	A	G	7.592e^-5	0.219	UTR_3_PRIME CG43172 & 1 other DOWNSTREAM CG43171 & 2 others INTRON CG42732
3L	18447251	3L_18447251_SNP [dm3] 3L_18454151_SNP [dm6]	G	T	7.606e^-5	0.219	INTERGENIC
3R	7100702	3R_7100702_SNP [dm3] 3R_11274980_SNP [dm6]	C	T	7.634e^-5	0.219	INTRON CR31386
X	20958885	X_20958885_SNP [dm3] X_21087858_SNP [dm6]	A	G	7.658e^-5	0.219	INTERGENIC
3L	18453726	3L_18453726_SNP [dm3] 3L_18460626_SNP [dm6]	T	A	7.665e^-5	0.219	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15504633	3L_15504633_SNP [dm3] 3L_15511533_SNP [dm6]	G	T	7.666e^-5	0.219	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2349776	3L_2349776_SNP [dm3] 3L_2349776_SNP [dm6]	T	G	7.666e^-5	0.219	INTERGENIC
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	7.667e^-5	0.219	INTRON CG6282
3R	19710214	3R_19710214_SNP [dm3] 3R_23884492_SNP [dm6]	C	A	7.691e^-5	0.22	INTRON Pli
2L	12841186	2L_12841186_SNP [dm3] 2L_12841186_SNP [dm6]	C	G	7.702e^-5	0.22	UPSTREAM CR44971 EXON CR44970
2L	6102446	2L_6102446_SNP [dm3] 2L_6102446_SNP [dm6]	T	A	7.730e^-5	0.22	INTRON stai
3L	18860695	3L_18860695_INS [dm3] 3L_18867595_INS [dm6]	T	TA	7.744e^-5	0.22	UPSTREAM Dysb DOWNSTREAM CG14074 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	7.748e^-5	0.22	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3L	18398566	3L_18398566_SNP [dm3] 3L_18405466_SNP [dm6]	A	G	7.755e^-5	0.22	INTERGENIC	regulatory region REDfly_CRMs
3L	12505002	3L_12505002_SNP [dm3] 3L_12511902_SNP [dm6]	C	T	7.762e^-5	0.22	INTRON sti
3L	21091030	3L_21091030_SNP [dm3] 3L_21097930_SNP [dm6]	G	A	7.803e^-5	0.22	INTRON ko
2R	19118996	2R_19118996_INS [dm3] 2R_23231473_INS [dm6]	C	CC	7.820e^-5	0.22	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3L	15506804	3L_15506804_SNP [dm3] 3L_15513704_SNP [dm6]	C	T	7.829e^-5	0.22	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs
2R	969100	2R_969100_SNP [dm3] 2R_5081595_SNP [dm6]	A	C	7.831e^-5	0.22	DOWNSTREAM CR43360 INTERGENIC	transposable element FlyBase
X	12718493	X_12718493_SNP [dm3] X_12824460_SNP [dm6]	C	T	7.834e^-5	0.22	INTRON Pde9
3R	7098803	3R_7098803_SNP [dm3] 3R_11273081_SNP [dm6]	C	A	7.885e^-5	0.221	INTRON CR31386
3L	18447383	3L_18447383_SNP [dm3] 3L_18454283_SNP [dm6]	T	A	7.892e^-5	0.221	INTERGENIC
3R	4791816	3R_4791816_INS [dm3] 3R_8966094_INS [dm6]	T	TGTTATCAATTTTATGTTAT...	7.925e^-5	0.221	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13687001	3R_13687001_SNP [dm3] 3R_17861279_SNP [dm6]	A	C	7.939e^-5	0.221	INTRON tinc
3L	4706354	3L_4706354_SNP [dm3] 3L_4706354_SNP [dm6]	C	A	7.943e^-5	0.221	INTRON RhoGEF64C
3R	7095124	3R_7095124_SNP [dm3] 3R_11269402_SNP [dm6]	A	G	7.960e^-5	0.221	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5889409	3L_5889409_SNP [dm3] 3L_5896309_SNP [dm6]	C	T	7.963e^-5	0.221	SYNONYMOUS_CODING Pole2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7845930	3L_7845930_SNP [dm3] 3L_7852830_SNP [dm6]	A	G	7.990e^-5	0.222	INTRON Pdp1
3R	14269393	3R_14269393_SNP [dm3] 3R_18443671_SNP [dm6]	C	T	8.000e^-5	0.222	INTRON fru
2L	16430701	2L_16430701_SNP [dm3] 2L_16430701_SNP [dm6]	G	A	8.028e^-5	0.222	INTRON CG5888
3L	18444611	3L_18444611_SNP [dm3] 3L_18451511_SNP [dm6]	C	A	8.030e^-5	0.222	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	21585769	3L_21585769_SNP [dm3] 3L_21592669_SNP [dm6]	G	A	8.058e^-5	0.222	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11066160	2L_11066160_SNP [dm3] 2L_11066160_SNP [dm6]	T	C	8.090e^-5	0.222	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10338818	X_10338818_SNP [dm3] X_10444785_SNP [dm6]	A	C	8.092e^-5	0.222	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
3R	6012950	3R_6012950_SNP [dm3] 3R_10187228_SNP [dm6]	C	T	8.110e^-5	0.222	INTRON CG12814
X	10828124	X_10828124_SNP [dm3] X_10934091_SNP [dm6]	T	C	8.110e^-5	0.222	INTRON Myo10A
2R	15114748	2R_15114748_SNP [dm3] 2R_19227243_SNP [dm6]	G	T	8.112e^-5	0.222	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12174189	X_12174189_SNP [dm3] X_12280156_SNP [dm6]	G	T	8.165e^-5	0.223	INTRON Ten-a
2L	15319483	2L_15319483_SNP [dm3] 2L_15319483_SNP [dm6]	C	G	8.171e^-5	0.223	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21569325	3L_21569325_DEL [dm3] 3L_21576225_DEL [dm6]	TTGAGTTTGTGTATTTCTCA...	T	8.181e^-5	0.223	DOWNSTREAM CG32441 EXON CR43939
2L	10421833	2L_10421833_SNP [dm3] 2L_10421833_SNP [dm6]	G	A	8.247e^-5	0.224	SYNONYMOUS_CODING pie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15255675	2R_15255675_SNP [dm3] 2R_19368170_SNP [dm6]	A	T	8.253e^-5	0.224	SYNONYMOUS_CODING CG9416 DOWNSTREAM CG10051
3L	18570630	3L_18570630_SNP [dm3] 3L_18577530_SNP [dm6]	G	T	8.273e^-5	0.224	INTERGENIC
3R	26484000	3R_26484000_SNP [dm3] 3R_30658278_SNP [dm6]	T	C	8.277e^-5	0.224	INTERGENIC
3L	9376267	3L_9376267_DEL [dm3] 3L_9383167_DEL [dm6]	GT	G	8.335e^-5	0.224	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	8.358e^-5	0.224	INTERGENIC
X	10338823	X_10338823_SNP [dm3] X_10444790_SNP [dm6]	T	A	8.379e^-5	0.224	UPSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	8566885	2L_8566885_SNP [dm3] 2L_8566885_SNP [dm6]	T	C	8.381e^-5	0.224	INTRON Sema-1a
X	10828090	X_10828090_SNP [dm3] X_10934057_SNP [dm6]	C	T	8.385e^-5	0.224	INTRON Myo10A
3L	15283946	3L_15283946_SNP [dm3] 3L_15290846_SNP [dm6]	C	A	8.385e^-5	0.224	INTERGENIC	TF binding site mE1_TFBS_inv
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	8.388e^-5	0.224	INTRON CG32683
2L	10460678	2L_10460678_SNP [dm3] 2L_10460678_SNP [dm6]	C	T	8.388e^-5	0.224	SYNONYMOUS_CODING LM408
2L	15346942	2L_15346942_SNP [dm3] 2L_15346942_SNP [dm6]	G	T	8.397e^-5	0.224	INTERGENIC
2L	5141636	2L_5141636_SNP [dm3] 2L_5141636_SNP [dm6]	G	T	8.399e^-5	0.224	INTRON Msp300
3R	810769	3R_810769_SNP [dm3] 3R_4985047_SNP [dm6]	C	T	8.401e^-5	0.224	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	15205344	2R_15205344_SNP [dm3] 2R_19317839_SNP [dm6]	G	C	8.423e^-5	0.224	INTRON Rgk1
X	8829274	X_8829274_SNP [dm3] X_8935241_SNP [dm6]	G	A	8.442e^-5	0.224	INTRON rdgA
3L	18857120	3L_18857120_DEL [dm3] 3L_18864020_DEL [dm6]	TCTAACATCTAATGTTCCAA...	T	8.460e^-5	0.224	UPSTREAM CG6865 INTRON CG6865
X	20958887	X_20958887_SNP [dm3] X_21087860_SNP [dm6]	A	G	8.461e^-5	0.224	INTERGENIC
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	8.472e^-5	0.224	INTRON Rgk1
2L	13891743	2L_13891743_SNP [dm3] 2L_13891743_SNP [dm6]	A	C	8.473e^-5	0.224	INTRON CenG1A
3L	1873395	3L_1873395_SNP [dm3] 3L_1873395_SNP [dm6]	T	C	8.477e^-5	0.224	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	6389991	3R_6389991_SNP [dm3] 3R_10564269_SNP [dm6]	G	C	8.513e^-5	0.224	INTRON hth
2L	13891460	2L_13891460_SNP [dm3] 2L_13891460_SNP [dm6]	A	G	8.517e^-5	0.224	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	19112795	X_19112795_SNP [dm3] X_19218762_SNP [dm6]	T	G	8.528e^-5	0.224	INTERGENIC
2L	10460574	2L_10460574_SNP [dm3] 2L_10460574_SNP [dm6]	C	T	8.532e^-5	0.224	SPLICE_SITE_REGION LM408 INTRON LM408
3L	15504976	3L_15504976_SNP [dm3] 3L_15511876_SNP [dm6]	G	A	8.591e^-5	0.225	UPSTREAM Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10635080	X_10635080_SNP [dm3] X_10741047_SNP [dm6]	C	T	8.626e^-5	0.225	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
2L	11979122	2L_11979122_SNP [dm3] 2L_11979122_SNP [dm6]	G	A	8.638e^-5	0.225	INTERGENIC
3R	26373042	3R_26373042_SNP [dm3] 3R_30547320_SNP [dm6]	G	A	8.644e^-5	0.225	INTRON tmod
3L	10794922	3L_10794922_INS [dm3] 3L_10801822_INS [dm6]	C	CATCGTACGGTCCTCCCAGT...	8.647e^-5	0.225
3R	19708650	3R_19708650_SNP [dm3] 3R_23882928_SNP [dm6]	T	G	8.655e^-5	0.225	INTRON Pli
3L	3881124	3L_3881124_SNP [dm3] 3L_3881124_SNP [dm6]	A	G	8.679e^-5	0.225	INTERGENIC
3L	16030488	3L_16030488_SNP [dm3] 3L_16037388_SNP [dm6]	C	A	8.702e^-5	0.225	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
3R	14269413	3R_14269413_SNP [dm3] 3R_18443691_SNP [dm6]	C	A	8.703e^-5	0.225	INTRON fru
2L	4324389	2L_4324389_SNP [dm3] 2L_4324389_SNP [dm6]	G	C	8.704e^-5	0.225	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9959436	X_9959436_SNP [dm3] X_10065403_SNP [dm6]	A	G	8.710e^-5	0.225	INTRON CG15312
3L	18488380	3L_18488380_SNP [dm3] 3L_18495280_SNP [dm6]	A	G	8.717e^-5	0.225	INTRON AstC-R2
3L	18430368	3L_18430368_SNP [dm3] 3L_18437268_SNP [dm6]	T	A	8.731e^-5	0.225	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	18391750	3L_18391750_DEL [dm3] 3L_18398650_DEL [dm6]	GG	G	8.743e^-5	0.225	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	20695730	2L_20695730_SNP [dm3] 2L_20695730_SNP [dm6]	T	G	8.746e^-5	0.225	INTRON Hr38
2L	615853	2L_615853_SNP [dm3] 2L_615853_SNP [dm6]	C	T	8.756e^-5	0.225	INTERGENIC
3R	16143458	3R_16143458_SNP [dm3] 3R_20317736_SNP [dm6]	C	A	8.765e^-5	0.225	UPSTREAM CG42668 INTRON CG42668
3R	6097864	3R_6097864_SNP [dm3] 3R_10272142_SNP [dm6]	A	G	8.772e^-5	0.225	INTRON CG43143
2L	12845193	2L_12845193_SNP [dm3] 2L_12845193_SNP [dm6]	G	T	8.831e^-5	0.226	INTERGENIC
2R	11544440	2R_11544440_SNP [dm3] 2R_15656935_SNP [dm6]	G	A	8.955e^-5	0.228	UTR_3_PRIME CG42524 UPSTREAM mir-278 DOWNSTREAM fus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10925027	2L_10925027_SNP [dm3] 2L_10925027_SNP [dm6]	T	A	8.959e^-5	0.228	INTRON dpr2
3R	14344934	3R_14344934_SNP [dm3] 3R_18519212_SNP [dm6]	G	T	8.966e^-5	0.228	INTRON fru
2L	12821770	2L_12821770_SNP [dm3] 2L_12821770_SNP [dm6]	G	T	9.016e^-5	0.228	UTR_5_PRIME kek1
2L	6102968	2L_6102968_SNP [dm3] 2L_6102968_SNP [dm6]	G	T	9.024e^-5	0.228	INTRON stai
2L	5141969	2L_5141969_SNP [dm3] 2L_5141969_SNP [dm6]	C	T	9.029e^-5	0.228	INTRON Msp300
3R	23853063	3R_23853063_SNP [dm3] 3R_28027341_SNP [dm6]	C	A	9.052e^-5	0.228	INTRON CG34362
X	10304257	X_10304257_SNP [dm3] X_10410224_SNP [dm6]	C	G	9.066e^-5	0.228	DOWNSTREAM CG32683 & 1 other INTERGENIC
X	21436473	X_21436473_SNP [dm3] X_21565446_SNP [dm6]	A	C	9.066e^-5	0.228	INTERGENIC
3R	13687002	3R_13687002_SNP [dm3] 3R_17861280_SNP [dm6]	T	C	9.076e^-5	0.228	INTRON tinc
X	5589567	X_5589567_SNP [dm3] X_5695534_SNP [dm6]	T	A	9.083e^-5	0.228	UPSTREAM CG3149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	17867835	2L_17867835_SNP [dm3] 2L_17867835_SNP [dm6]	A	T	9.083e^-5	0.228	INTRON CadN2
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	9.084e^-5	0.228	INTERGENIC
2L	15276729	2L_15276729_SNP [dm3] 2L_15276729_SNP [dm6]	A	G	9.110e^-5	0.228	INTERGENIC
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	9.156e^-5	0.228	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16433343	2L_16433343_SNP [dm3] 2L_16433343_SNP [dm6]	A	T	9.159e^-5	0.228	INTRON CG5888
3R	5866101	3R_5866101_SNP [dm3] 3R_10040379_SNP [dm6]	G	A	9.163e^-5	0.228	INTRON Mical
2L	16428585	2L_16428585_INS [dm3] 2L_16428585_INS [dm6]	A	TG	9.224e^-5	0.228	INTRON CG5888
2L	16428590	2L_16428590_INS [dm3] 2L_16428590_INS [dm6]	C	TATGTA	9.224e^-5	0.228	INTRON CG5888
2L	5076755	2L_5076755_SNP [dm3] 2L_5076755_SNP [dm6]	G	A	9.230e^-5	0.228	INTRON pgant5
3R	9817562	3R_9817562_SNP [dm3] 3R_13991840_SNP [dm6]	C	T	9.231e^-5	0.228	INTRON rdx	TF binding site mE1_TFBS_inv
3R	15298482	3R_15298482_SNP [dm3] 3R_19472760_SNP [dm6]	C	A	9.241e^-5	0.228	INTRON Dys	TF binding site mE1_TFBS_cad
2L	615855	2L_615855_SNP [dm3] 2L_615855_SNP [dm6]	T	A	9.247e^-5	0.228	INTERGENIC
X	3982523	X_3982523_INS [dm3] X_4088490_INS [dm6]	C	CCC	9.251e^-5	0.228	INTRON CG43689	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	18650373	3L_18650373_SNP [dm3] 3L_18657273_SNP [dm6]	G	T	9.259e^-5	0.228	INTRON MYPT-75D
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	9.262e^-5	0.228	INTERGENIC
3R	4791819	3R_4791819_INS [dm3] 3R_8966097_INS [dm6]	G	GCTATAAAC	9.267e^-5	0.228	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14760035	X_14760035_SNP [dm3] X_14866002_SNP [dm6]	A	G	9.287e^-5	0.228	UTR_5_PRIME CG9518 INTRON Flo2
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	9.301e^-5	0.228	DOWNSTREAM CR44415 INTERGENIC
3L	18857119	3L_18857119_SNP [dm3] 3L_18864019_SNP [dm6]	A	G	9.302e^-5	0.228	UPSTREAM CG6865 INTRON CG6865
3R	6080248	3R_6080248_SNP [dm3] 3R_10254526_SNP [dm6]	G	A	9.315e^-5	0.228	SYNONYMOUS_CODING CG3999 DOWNSTREAM Sirt6	TF binding site mE1_TFBS_sens
X	10400249	X_10400249_INS [dm3] X_10506216_INS [dm6]	T	TT	9.317e^-5	0.228	INTRON spri
2L	17857328	2L_17857328_SNP [dm3] 2L_17857328_SNP [dm6]	C	A	9.324e^-5	0.228	INTRON CadN2
2L	10660719	2L_10660719_SNP [dm3] 2L_10660719_SNP [dm6]	C	T	9.328e^-5	0.228	INTERGENIC
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	9.342e^-5	0.228	INTERGENIC
X	16417652	X_16417652_SNP [dm3] X_16523619_SNP [dm6]	T	C	9.356e^-5	0.228	NON_SYNONYMOUS_CODING Cnx14D INTRON para
3L	17403881	3L_17403881_DEL [dm3] 3L_17410781_DEL [dm6]	GAG	G	9.374e^-5	0.228	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	11434297	2L_11434297_SNP [dm3] 2L_11434297_SNP [dm6]	G	T	9.385e^-5	0.228	DOWNSTREAM salm INTERGENIC
2L	1719525	2L_1719525_SNP [dm3] 2L_1719525_SNP [dm6]	G	A	9.396e^-5	0.228	INTRON Rim2
3L	21569359	3L_21569359_SNP [dm3] 3L_21576259_SNP [dm6]	C	T	9.399e^-5	0.228	DOWNSTREAM CG32441 EXON CR43939
3R	1270986	3R_1270986_SNP [dm3] 3R_5445264_SNP [dm6]	G	A	9.412e^-5	0.228	INTRON CG14669
2L	5796410	2L_5796410_SNP [dm3] 2L_5796410_SNP [dm6]	G	A	9.423e^-5	0.228	INTRON CG9171
X	4447326	X_4447326_SNP [dm3] X_4553293_SNP [dm6]	A	T	9.475e^-5	0.229	UTR_3_PRIME CG11444 DOWNSTREAM CG3527 INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	14101533	X_14101533_SNP [dm3] X_14207500_SNP [dm6]	A	T	9.483e^-5	0.229	INTRON l_1_G0007 & 1 other
2R	11965490	2R_11965490_SNP [dm3] 2R_16077985_SNP [dm6]	C	T	9.484e^-5	0.229	DOWNSTREAM CR43415 INTERGENIC
X	14536340	X_14536340_SNP [dm3] X_14642307_SNP [dm6]	A	T	9.515e^-5	0.229	INTRON NetA
2L	18670863	2L_18670863_SNP [dm3] 2L_18670863_SNP [dm6]	C	T	9.521e^-5	0.229	UPSTREAM CG43338 DOWNSTREAM CG43339 INTRON CG43338
3L	12377542	3L_12377542_SNP [dm3] 3L_12384442_SNP [dm6]	G	A	9.543e^-5	0.229	INTRON Ncc69
3R	810662	3R_810662_DEL [dm3] 3R_4984940_DEL [dm6]	CGACGCCGACTGCATTTCAT...	C	9.561e^-5	0.229	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	5069554	2L_5069554_SNP [dm3] 2L_5069554_SNP [dm6]	C	T	9.574e^-5	0.229	DOWNSTREAM mir-2495 & 1 other INTRON qtc
3R	4963433	3R_4963433_SNP [dm3] 3R_9137711_SNP [dm6]	G	A	9.586e^-5	0.229	INTRON pum
2L	10461467	2L_10461467_SNP [dm3] 2L_10461467_SNP [dm6]	C	T	9.615e^-5	0.23	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
X	19684799	X_19684799_SNP [dm3] X_19790766_SNP [dm6]	T	A	9.623e^-5	0.23	INTERGENIC
3L	8841719	3L_8841719_SNP [dm3] 3L_8848619_SNP [dm6]	T	G	9.662e^-5	0.23	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9399696	2R_9399696_SNP [dm3] 2R_13512191_SNP [dm6]	T	C	9.677e^-5	0.23	SYNONYMOUS_CODING mip120 DOWNSTREAM Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17678108	2R_17678108_SNP [dm3] 2R_21790603_SNP [dm6]	G	T	9.697e^-5	0.23	SYNONYMOUS_CODING lox2
3R	7224260	3R_7224260_SNP [dm3] 3R_11398538_SNP [dm6]	C	A	9.754e^-5	0.231	UTR_3_PRIME pros
X	13697345	X_13697345_SNP [dm3] X_13803312_SNP [dm6]	A	T	9.761e^-5	0.231	INTRON inaE
3L	18480435	3L_18480435_INS [dm3] 3L_18487335_INS [dm6]	C	CAAAATAAAACCG...	9.769e^-5	0.231	INTRON AstC-R2
2R	9260960	2R_9260960_SNP [dm3] 2R_13373455_SNP [dm6]	G	C	9.792e^-5	0.231	INTERGENIC
2L	8568924	2L_8568924_SNP [dm3] 2L_8568924_SNP [dm6]	G	A	9.800e^-5	0.231	INTRON Sema-1a
3R	15177194	3R_15177194_SNP [dm3] 3R_19351472_SNP [dm6]	C	T	9.807e^-5	0.231	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	10399616	X_10399616_SNP [dm3] X_10505583_SNP [dm6]	T	C	9.822e^-5	0.231	INTRON spri
3L	18857094	3L_18857094_SNP [dm3] 3L_18863994_SNP [dm6]	T	C	9.827e^-5	0.231	UPSTREAM CG6865 INTRON CG6865
X	8837153	X_8837153_SNP [dm3] X_8943120_SNP [dm6]	T	A	9.829e^-5	0.231	INTRON rdgA
2L	5145259	2L_5145259_SNP [dm3] 2L_5145259_SNP [dm6]	A	T	9.851e^-5	0.231	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19487478	2L_19487478_SNP [dm3] 2L_19487478_SNP [dm6]	G	C	9.896e^-5	0.232	UPSTREAM CG13083 DOWNSTREAM CG13084 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1840816	2L_1840816_SNP [dm3] 2L_1840816_SNP [dm6]	A	T	9.896e^-5	0.232	UPSTREAM CR44073 & 1 other INTRON wry
2R	19366232	2R_19366232_SNP [dm3] 2R_23478709_SNP [dm6]	T	G	9.913e^-5	0.232	INTRON CG43795
2R	7295563	2R_7295563_SNP [dm3] 2R_11408058_SNP [dm6]	T	C	9.949e^-5	0.232	UTR_3_PRIME CG7759 DOWNSTREAM CG30026	TF binding site mE1_TFBS_bab1
3L	99433	3L_99433_SNP [dm3] 3L_99433_SNP [dm6]	C	T	9.980e^-5	0.232	INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	13928788	2L_13928788_SNP [dm3] 2L_13928788_SNP [dm6]	T	C	1.000e^-4	0.232	INTRON Ance-3
2L	13928791	2L_13928791_SNP [dm3] 2L_13928791_SNP [dm6]	G	A	1.000e^-4	0.232	INTRON Ance-3
3L	4098902	3L_4098902_SNP [dm3] 3L_4098902_SNP [dm6]	A	C	1.000e^-4	0.232	INTRON CG14995	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	11036343	2L_11036343_INS [dm3] 2L_11036343_INS [dm6]	A	AAAAGGATCTTTTAATTTG...	1.001e^-4	0.232	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	23011370	3L_23011370_SNP [dm3] 3L_23018270_SNP [dm6]	T	G	1.005e^-4	0.233	INTRON nrm	transposable element FlyBase
2L	16429012	2L_16429012_SNP [dm3] 2L_16429012_SNP [dm6]	A	C	1.007e^-4	0.233	INTRON CG5888
2L	12845323	2L_12845323_SNP [dm3] 2L_12845323_SNP [dm6]	G	C	1.011e^-4	0.234	INTERGENIC
3L	6854567	3L_6854567_SNP [dm3] 3L_6861467_SNP [dm6]	G	T	1.011e^-4	0.234	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7825950	2L_7825950_SNP [dm3] 2L_7825950_SNP [dm6]	G	A	1.019e^-4	0.235	SYNONYMOUS_CODING Rack1 UTR_3_PRIME Rack1 DOWNSTREAM CG7115	TF binding site mE1_TFBS_cad
3R	7097665	3R_7097665_INS [dm3] 3R_11271943_INS [dm6]	G	GG	1.021e^-4	0.235	INTRON CR31386
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	1.024e^-4	0.235	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23853087	3R_23853087_SNP [dm3] 3R_28027365_SNP [dm6]	C	A	1.025e^-4	0.235	INTRON CG34362
3L	3341577	3L_3341577_SNP [dm3] 3L_3341577_SNP [dm6]	T	C	1.026e^-4	0.235	INTRON kst
3R	13144288	3R_13144288_SNP [dm3] 3R_17318566_SNP [dm6]	C	T	1.026e^-4	0.235	INTERGENIC
2L	19760989	2L_19760989_SNP [dm3] 2L_19760989_SNP [dm6]	A	T	1.027e^-4	0.235	DOWNSTREAM fbp & 1 other INTERGENIC
2L	19760991	2L_19760991_SNP [dm3] 2L_19760991_SNP [dm6]	G	A	1.027e^-4	0.235	DOWNSTREAM fbp & 1 other INTERGENIC
3L	86256	3L_86256_SNP [dm3] 3L_86256_SNP [dm6]	T	C	1.029e^-4	0.235	INTERGENIC
3R	374007	3R_374007_SNP [dm3] 3R_4548285_SNP [dm6]	G	T	1.029e^-4	0.235	INTRON CG34357	transposable element FlyBase
2R	17049173	2R_17049173_SNP [dm3] 2R_21161668_SNP [dm6]	G	A	1.030e^-4	0.235	UPSTREAM tRNA:CR30206 & 1 other DOWNSTREAM CG4266 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	6440264	3R_6440264_SNP [dm3] 3R_10614542_SNP [dm6]	G	C	1.032e^-4	0.235	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10333807	X_10333807_SNP [dm3] X_10439774_SNP [dm6]	C	T	1.033e^-4	0.235	INTRON CG32683
2L	12823663	2L_12823663_SNP [dm3] 2L_12823663_SNP [dm6]	C	G	1.036e^-4	0.235	UPSTREAM kek1 INTERGENIC
2L	16815632	2L_16815632_SNP [dm3] 2L_16815632_SNP [dm6]	G	A	1.040e^-4	0.235	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
3L	18860678	3L_18860678_SNP [dm3] 3L_18867578_SNP [dm6]	C	A	1.041e^-4	0.235	UPSTREAM Dysb DOWNSTREAM CG14074 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12178543	2L_12178543_SNP [dm3] 2L_12178543_SNP [dm6]	C	A	1.042e^-4	0.235	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
3R	23852572	3R_23852572_SNP [dm3] 3R_28026850_SNP [dm6]	C	T	1.043e^-4	0.235	UTR_5_PRIME CG34362
2R	18059171	2R_18059171_SNP [dm3] 2R_22171666_SNP [dm6]	A	G	1.043e^-4	0.235	SYNONYMOUS_CODING a INTRON a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1552362	3L_1552362_SNP [dm3] 3L_1552362_SNP [dm6]	G	A	1.044e^-4	0.235	SYNONYMOUS_CODING Cct1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11136069	2R_11136069_DEL [dm3] 2R_15248564_DEL [dm6]	TA	T	1.045e^-4	0.235	UPSTREAM scb INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	7098650	3L_7098650_SNP [dm3] 3L_7105550_SNP [dm6]	G	C	1.047e^-4	0.235	INTRON form3
X	13019266	X_13019266_SNP [dm3] X_13125233_SNP [dm6]	T	C	1.048e^-4	0.235	INTRON CG32638
2L	16429623	2L_16429623_SNP [dm3] 2L_16429623_SNP [dm6]	T	A	1.051e^-4	0.236	INTRON CG5888
3R	13553104	3R_13553104_SNP [dm3] 3R_17727382_SNP [dm6]	A	G	1.054e^-4	0.236	INTRON Lgr1
2L	15291722	2L_15291722_SNP [dm3] 2L_15291722_SNP [dm6]	C	A	1.056e^-4	0.236	NON_SYNONYMOUS_CODING CG15260 UPSTREAM ms_2_35Ci	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15287230	3L_15287230_SNP [dm3] 3L_15294130_SNP [dm6]	A	C	1.057e^-4	0.236	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
X	14102068	X_14102068_SNP [dm3] X_14208035_SNP [dm6]	G	A	1.057e^-4	0.236	INTRON l_1_G0007 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	967706	2R_967706_SNP [dm3] 2R_5080201_SNP [dm6]	C	A	1.058e^-4	0.236	INTERGENIC
2R	19138664	2R_19138664_SNP [dm3] 2R_23251141_SNP [dm6]	A	G	1.058e^-4	0.236	INTERGENIC
2R	19138587	2R_19138587_SNP [dm3] 2R_23251064_SNP [dm6]	C	A	1.061e^-4	0.236	INTERGENIC
2L	13928872	2L_13928872_SNP [dm3] 2L_13928872_SNP [dm6]	C	T	1.063e^-4	0.236	INTRON Ance-3
2L	10660692	2L_10660692_SNP [dm3] 2L_10660692_SNP [dm6]	T	C	1.068e^-4	0.236	INTERGENIC
2R	3821548	2R_3821548_SNP [dm3] 2R_7934043_SNP [dm6]	T	C	1.070e^-4	0.236	INTRON drosha
3L	16149115	3L_16149115_SNP [dm3] 3L_16156015_SNP [dm6]	T	G	1.070e^-4	0.236	INTRON CG5151
2L	15210904	2L_15210904_INS [dm3] 2L_15210904_INS [dm6]	T	ATACCCATTTTAATAG...	1.071e^-4	0.236	INTERGENIC
3R	5893822	3R_5893822_SNP [dm3] 3R_10068100_SNP [dm6]	T	A	1.072e^-4	0.236	NON_SYNONYMOUS_CODING CG33784 DOWNSTREAM CG33783
2L	12829560	2L_12829560_SNP [dm3] 2L_12829560_SNP [dm6]	C	A	1.073e^-4	0.236	INTERGENIC
3R	23669952	3R_23669952_SNP [dm3] 3R_27844230_SNP [dm6]	T	C	1.073e^-4	0.236	UPSTREAM Or98P INTRON CG34353
2L	5139666	2L_5139666_SNP [dm3] 2L_5139666_SNP [dm6]	C	T	1.076e^-4	0.236	NON_SYNONYMOUS_CODING Msp300
3L	18386985	3L_18386985_SNP [dm3] 3L_18393885_SNP [dm6]	G	C	1.076e^-4	0.236	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7854381	3L_7854381_SNP [dm3] 3L_7861281_SNP [dm6]	G	A	1.077e^-4	0.236	INTRON Pdp1
X	16416495	X_16416495_SNP [dm3] X_16522462_SNP [dm6]	G	A	1.079e^-4	0.236	DOWNSTREAM Cnx14D INTRON para
2L	12818940	2L_12818940_SNP [dm3] 2L_12818940_SNP [dm6]	C	A	1.080e^-4	0.236	UTR_3_PRIME kek1	TF binding site mE1_TFBS_cad
3L	2693503	3L_2693503_SNP [dm3] 3L_2693503_SNP [dm6]	C	T	1.080e^-4	0.236	INTRON Fife
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	1.082e^-4	0.236	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3008219	X_3008219_SNP [dm3] X_3114186_SNP [dm6]	C	A	1.083e^-4	0.236	INTRON kirre
3L	14396700	3L_14396700_SNP [dm3] 3L_14403600_SNP [dm6]	A	C	1.084e^-4	0.236	UTR_3_PRIME stwl UPSTREAM CG3868
3R	15177158	3R_15177158_SNP [dm3] 3R_19351436_SNP [dm6]	T	A	1.085e^-4	0.236	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	15114757	2R_15114757_SNP [dm3] 2R_19227252_SNP [dm6]	G	C	1.087e^-4	0.237	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	16044509	3R_16044509_SNP [dm3] 3R_20218787_SNP [dm6]	G	A	1.096e^-4	0.238	INTRON Nlg4
X	10333583	X_10333583_SNP [dm3] X_10439550_SNP [dm6]	C	T	1.100e^-4	0.238	INTRON CG32683
2L	5509433	2L_5509433_SNP [dm3] 2L_5509433_SNP [dm6]	T	A	1.100e^-4	0.238	INTERGENIC
3L	18862041	3L_18862041_SNP [dm3] 3L_18868941_SNP [dm6]	T	C	1.102e^-4	0.238	UTR_3_PRIME Dysb UPSTREAM CG6852	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	13928767	2L_13928767_DEL [dm3] 2L_13928767_DEL [dm6]	AT	A	1.102e^-4	0.238	INTRON Ance-3
3L	8606750	3L_8606750_SNP [dm3] 3L_8613650_SNP [dm6]	C	T	1.103e^-4	0.238	SPLICE_SITE_REGION CG6282 INTRON CG6282
3L	16334368	3L_16334368_SNP [dm3] 3L_16341268_SNP [dm6]	T	C	1.103e^-4	0.238	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15195747	3R_15195747_SNP [dm3] 3R_19370025_SNP [dm6]	G	A	1.105e^-4	0.238	INTRON Ino80
3L	12317303	3L_12317303_SNP [dm3] 3L_12324203_SNP [dm6]	A	T	1.112e^-4	0.238	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15648887	3L_15648887_SNP [dm3] 3L_15655787_SNP [dm6]	G	A	1.113e^-4	0.238	SYNONYMOUS_CODING Eig71Ee DOWNSTREAM Eig71Ef
2L	6099643	2L_6099643_SNP [dm3] 2L_6099643_SNP [dm6]	A	T	1.114e^-4	0.238	UPSTREAM CG9175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	15086915	3R_15086915_INS [dm3] 3R_19261193_INS [dm6]	T	TAATTATTT	1.114e^-4	0.238	INTERGENIC
2R	14529093	2R_14529093_DEL [dm3] 2R_18641588_DEL [dm6]	AA	A	1.115e^-4	0.238	DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
X	11814589	X_11814589_SNP [dm3] X_11920556_SNP [dm6]	C	T	1.115e^-4	0.238	UTR_3_PRIME Sclp UPSTREAM CR43157 & 1 other EXON CR32660
3R	5951203	3R_5951203_SNP [dm3] 3R_10125481_SNP [dm6]	A	G	1.115e^-4	0.238	UTR_5_PRIME knk DOWNSTREAM tws
X	9590375	X_9590375_SNP [dm3] X_9696342_SNP [dm6]	G	A	1.120e^-4	0.239	SYNONYMOUS_CODING btd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21091060	3L_21091060_SNP [dm3] 3L_21097960_SNP [dm6]	T	A	1.121e^-4	0.239	INTRON ko
X	20958936	X_20958936_SNP [dm3] X_21087909_SNP [dm6]	G	A	1.127e^-4	0.24	INTERGENIC
X	20946173	X_20946173_SNP [dm3] X_21075146_SNP [dm6]	T	A	1.128e^-4	0.24	INTRON bves
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	1.129e^-4	0.24	INTRON hth
3L	13259383	3L_13259383_SNP [dm3] 3L_13266283_SNP [dm6]	C	T	1.129e^-4	0.24	INTRON caps
3R	6013781	3R_6013781_SNP [dm3] 3R_10188059_SNP [dm6]	T	G	1.135e^-4	0.241	UTR_5_PRIME CG12814
3L	4666170	3L_4666170_SNP [dm3] 3L_4666170_SNP [dm6]	T	C	1.135e^-4	0.241	SYNONYMOUS_CODING CG32236 INTRON axo
2L	5079950	2L_5079950_SNP [dm3] 2L_5079950_SNP [dm6]	G	A	1.140e^-4	0.241	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3L	22166830	3L_22166830_SNP [dm3] 3L_22173730_SNP [dm6]	A	G	1.140e^-4	0.241	INTRON olf413	TF binding site mE1_TFBS_inv
2L	5079944	2L_5079944_SNP [dm3] 2L_5079944_SNP [dm6]	G	A	1.141e^-4	0.241	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
3R	14780351	3R_14780351_SNP [dm3] 3R_18954629_SNP [dm6]	C	G	1.143e^-4	0.241	INTRON CG42613 & 1 other
3R	15176936	3R_15176936_SNP [dm3] 3R_19351214_SNP [dm6]	G	A	1.143e^-4	0.241	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17723377	2R_17723377_SNP [dm3] 2R_21835872_SNP [dm6]	T	A	1.144e^-4	0.241	UPSTREAM CG4363 INTRON CG4377
2L	12827659	2L_12827659_SNP [dm3] 2L_12827659_SNP [dm6]	G	T	1.150e^-4	0.242	INTERGENIC
3L	18383747	3L_18383747_SNP [dm3] 3L_18390647_SNP [dm6]	C	T	1.151e^-4	0.242	INTERGENIC
2L	21942000	2L_21942000_SNP [dm3] 2L_21942000_SNP [dm6]	T	C	1.152e^-4	0.242	INTERGENIC
3L	16057980	3L_16057980_SNP [dm3] 3L_16064880_SNP [dm6]	A	T	1.156e^-4	0.242	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16370011	2R_16370011_SNP [dm3] 2R_20482506_SNP [dm6]	T	C	1.157e^-4	0.242	INTERGENIC
3L	897168	3L_897168_SNP [dm3] 3L_897168_SNP [dm6]	G	A	1.158e^-4	0.242	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	19138662	2R_19138662_SNP [dm3] 2R_23251139_SNP [dm6]	G	T	1.164e^-4	0.243	INTERGENIC
3R	6036260	3R_6036260_SNP [dm3] 3R_10210538_SNP [dm6]	G	A	1.164e^-4	0.243	INTRON Syn & 1 other
2R	967676	2R_967676_SNP [dm3] 2R_5080171_SNP [dm6]	A	G	1.168e^-4	0.243	INTERGENIC
X	20328182	X_20328182_SNP [dm3] X_20457155_SNP [dm6]	T	C	1.168e^-4	0.243	INTRON CG32506
2L	13928676	2L_13928676_SNP [dm3] 2L_13928676_SNP [dm6]	A	C	1.169e^-4	0.243	INTRON Ance-3
2L	13928686	2L_13928686_SNP [dm3] 2L_13928686_SNP [dm6]	T	A	1.169e^-4	0.243	INTRON Ance-3
2L	12804469	2L_12804469_SNP [dm3] 2L_12804469_SNP [dm6]	G	T	1.172e^-4	0.243	INTERGENIC
3R	5629818	3R_5629818_SNP [dm3] 3R_9804096_SNP [dm6]	T	A	1.173e^-4	0.243	UTR_3_PRIME FBX011 DOWNSTREAM CG8526 & 1 other
2L	6102874	2L_6102874_SNP [dm3] 2L_6102874_SNP [dm6]	A	T	1.173e^-4	0.243	INTRON stai
3L	8840102	3L_8840102_SNP [dm3] 3L_8847002_SNP [dm6]	C	A	1.176e^-4	0.243	INTRON dally
2L	12456233	2L_12456233_SNP [dm3] 2L_12456233_SNP [dm6]	A	T	1.176e^-4	0.243	UTR_3_PRIME bun DOWNSTREAM bun
2L	14553161	2L_14553161_SNP [dm3] 2L_14553161_SNP [dm6]	G	C	1.179e^-4	0.243	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	8310474	2L_8310474_SNP [dm3] 2L_8310474_SNP [dm6]	G	A	1.182e^-4	0.243	NON_SYNONYMOUS_CODING CG7810 UPSTREAM CG7806 DOWNSTREAM CG7818	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4676116	3L_4676116_SNP [dm3] 3L_4676116_SNP [dm6]	G	T	1.183e^-4	0.243	INTRON axo
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	1.184e^-4	0.243	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5551805	3L_5551805_SNP [dm3] 3L_5558705_SNP [dm6]	C	A	1.185e^-4	0.243	DOWNSTREAM sinu INTERGENIC	TF binding site mE1_TFBS_inv
3R	26098869	3R_26098869_SNP [dm3] 3R_30273147_SNP [dm6]	A	C	1.188e^-4	0.244	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6387987	2L_6387987_SNP [dm3] 2L_6387987_SNP [dm6]	A	G	1.190e^-4	0.244	INTRON CG42368
2L	1053381	2L_1053381_SNP [dm3] 2L_1053381_SNP [dm6]	C	T	1.192e^-4	0.244	INTRON S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8554897	X_8554897_SNP [dm3] X_8660864_SNP [dm6]	T	A	1.193e^-4	0.244	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	12665588	2L_12665588_SNP [dm3] 2L_12665588_SNP [dm6]	A	G	1.200e^-4	0.245	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21563209	3L_21563209_SNP [dm3] 3L_21570109_SNP [dm6]	G	A	1.201e^-4	0.245	SYNONYMOUS_CODING Smc5
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	1.202e^-4	0.245	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
X	8807661	X_8807661_SNP [dm3] X_8913628_SNP [dm6]	G	T	1.203e^-4	0.245	INTRON rdgA
3R	24094037	3R_24094037_DEL [dm3] 3R_28268315_DEL [dm6]	GGTCTTAC	G	1.203e^-4	0.245	INTERGENIC
2L	15319383	2L_15319383_SNP [dm3] 2L_15319383_SNP [dm6]	T	C	1.203e^-4	0.245	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7768138	2R_7768138_SNP [dm3] 2R_11880633_SNP [dm6]	C	G	1.205e^-4	0.245	SYNONYMOUS_CODING CG13185
2L	1359823	2L_1359823_SNP [dm3] 2L_1359823_SNP [dm6]	A	G	1.206e^-4	0.245	UPSTREAM CG31659 DOWNSTREAM NLaz INTERGENIC
3R	23560943	3R_23560943_SNP [dm3] 3R_27735221_SNP [dm6]	G	T	1.211e^-4	0.245	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10660700	2L_10660700_SNP [dm3] 2L_10660700_SNP [dm6]	T	G	1.212e^-4	0.245	INTERGENIC
3R	15176928	3R_15176928_DEL [dm3] 3R_19351206_DEL [dm6]	TAATGTA	T	1.214e^-4	0.245	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8608451	3L_8608451_SNP [dm3] 3L_8615351_SNP [dm6]	A	G	1.220e^-4	0.246	SYNONYMOUS_CODING CG6282
3R	6034946	3R_6034946_SNP [dm3] 3R_10209224_SNP [dm6]	C	T	1.226e^-4	0.246	INTRON Syn & 1 other
2L	15315494	2L_15315494_SNP [dm3] 2L_15315494_SNP [dm6]	T	G	1.227e^-4	0.246	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20926424	3R_20926424_SNP [dm3] 3R_25100702_SNP [dm6]	G	C	1.228e^-4	0.246	NON_SYNONYMOUS_CODING CG33095 UTR_3_PRIME CG33096 DOWNSTREAM CG33096	TF binding site mE1_TFBS_sens
3R	4176758	3R_4176758_SNP [dm3] 3R_8351036_SNP [dm6]	A	G	1.228e^-4	0.246	SYNONYMOUS_CODING Atg13	TF binding site mE1_TFBS_sens
2L	15292958	2L_15292958_SNP [dm3] 2L_15292958_SNP [dm6]	C	T	1.230e^-4	0.246	UPSTREAM CG15260 INTRON ms_2_35Ci
X	10324356	X_10324356_SNP [dm3] X_10430323_SNP [dm6]	G	C	1.231e^-4	0.246	INTRON CG32683
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	1.231e^-4	0.246	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
2L	13076362	2L_13076362_SNP [dm3] 2L_13076362_SNP [dm6]	A	C	1.235e^-4	0.246	INTERGENIC
3R	25887398	3R_25887398_SNP [dm3] 3R_30061676_SNP [dm6]	C	A	1.235e^-4	0.246	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	708649	3L_708649_SNP [dm3] 3L_708649_SNP [dm6]	G	T	1.238e^-4	0.246	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
3R	22516029	3R_22516029_SNP [dm3] 3R_26690307_SNP [dm6]	C	T	1.239e^-4	0.246	INTERGENIC
X	17244514	X_17244514_SNP [dm3] X_17350481_SNP [dm6]	G	A	1.240e^-4	0.246	INTERGENIC
3L	4111175	3L_4111175_SNP [dm3] 3L_4111175_SNP [dm6]	C	T	1.240e^-4	0.246	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13142909	3R_13142909_DEL [dm3] 3R_17317187_DEL [dm6]	CTACTG	C	1.241e^-4	0.246	INTERGENIC
3L	2391181	3L_2391181_SNP [dm3] 3L_2391181_SNP [dm6]	T	A	1.241e^-4	0.246	UPSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	22523894	3R_22523894_SNP [dm3] 3R_26698172_SNP [dm6]	C	A	1.241e^-4	0.246	UTR_3_PRIME amon
3L	73117	3L_73117_SNP [dm3] 3L_73117_SNP [dm6]	A	T	1.242e^-4	0.246	UPSTREAM CR43988 DOWNSTREAM CG13405 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5318604	X_5318604_SNP [dm3] X_5424571_SNP [dm6]	G	A	1.247e^-4	0.247	SYNONYMOUS_CODING CG4165	TF binding site mE1_TFBS_chinmo
3R	26709201	3R_26709201_SNP [dm3] 3R_30883479_SNP [dm6]	G	T	1.249e^-4	0.247	UTR_5_PRIME CG15547 UTR_3_PRIME Sap-r
2L	12465736	2L_12465736_SNP [dm3] 2L_12465736_SNP [dm6]	T	A	1.252e^-4	0.247	INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16174938	3L_16174938_SNP [dm3] 3L_16181838_SNP [dm6]	A	T	1.253e^-4	0.247	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15114713	2R_15114713_SNP [dm3] 2R_19227208_SNP [dm6]	C	T	1.257e^-4	0.247	UPSTREAM CG7137 DOWNSTREAM hppy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	24108202	3R_24108202_SNP [dm3] 3R_28282480_SNP [dm6]	G	T	1.257e^-4	0.247	UPSTREAM CG34436 INTERGENIC
X	9415210	X_9415210_SNP [dm3] X_9521177_SNP [dm6]	G	A	1.258e^-4	0.247	INTRON CG32700
2R	4777368	2R_4777368_SNP [dm3] 2R_8889863_SNP [dm6]	C	T	1.258e^-4	0.247	NON_SYNONYMOUS_CODING CG8272	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8421274	2L_8421274_DEL [dm3] 2L_8421274_DEL [dm6]	AA	A	1.259e^-4	0.247	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11042992	2L_11042992_SNP [dm3] 2L_11042992_SNP [dm6]	G	T	1.263e^-4	0.247	INTRON Samuel	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5874740	2R_5874740_INS [dm3] 2R_9987235_INS [dm6]	A	AAGCA	1.265e^-4	0.247	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	14269577	3R_14269577_SNP [dm3] 3R_18443855_SNP [dm6]	T	G	1.265e^-4	0.247	INTRON fru
2L	10928308	2L_10928308_SNP [dm3] 2L_10928308_SNP [dm6]	T	G	1.266e^-4	0.247	INTRON dpr2
2L	11036304	2L_11036304_DEL [dm3] 2L_11036304_DEL [dm6]	GAAAAGTTACATG...	G	1.268e^-4	0.247	DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
3L	18571259	3L_18571259_SNP [dm3] 3L_18578159_SNP [dm6]	C	G	1.268e^-4	0.247	INTERGENIC
X	8275181	X_8275181_SNP [dm3] X_8381148_SNP [dm6]	G	C	1.269e^-4	0.247	INTERGENIC
2R	17376613	2R_17376613_SNP [dm3] 2R_21489108_SNP [dm6]	G	A	1.270e^-4	0.247	INTRON Fkbp14
2R	8936470	2R_8936470_SNP [dm3] 2R_13048965_SNP [dm6]	A	G	1.270e^-4	0.247	DOWNSTREAM CG13324 INTERGENIC
3L	2607600	3L_2607600_SNP [dm3] 3L_2607600_SNP [dm6]	C	T	1.272e^-4	0.247	INTRON Pxn
3L	18480063	3L_18480063_SNP [dm3] 3L_18486963_SNP [dm6]	G	A	1.273e^-4	0.247	SYNONYMOUS_CODING AstC-R2
X	14255327	X_14255327_DEL [dm3] X_14361294_DEL [dm6]	TAA	T	1.274e^-4	0.247	INTRON dpr8
2L	10450742	2L_10450742_SNP [dm3] 2L_10450742_SNP [dm6]	A	G	1.280e^-4	0.248	SPLICE_SITE_REGION ppk10 DOWNSTREAM loh INTRON ppk10
2L	4847667	2L_4847667_SNP [dm3] 2L_4847667_SNP [dm6]	C	A	1.281e^-4	0.248	UPSTREAM mxt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	11044331	X_11044331_SNP [dm3] X_11150298_SNP [dm6]	C	T	1.282e^-4	0.248	INTRON Lint-1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	10519528	2L_10519528_DEL [dm3] 2L_10519528_DEL [dm6]	CCTGTGAGCCTTC...	C	1.282e^-4	0.248	DOWNSTREAM Lrr47 INTERGENIC
3L	16175430	3L_16175430_SNP [dm3] 3L_16182330_SNP [dm6]	T	C	1.284e^-4	0.248	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13984015	X_13984015_SNP [dm3] X_14089982_SNP [dm6]	C	A	1.291e^-4	0.249	INTERGENIC
3R	20924807	3R_20924807_SNP [dm3] 3R_25099085_SNP [dm6]	T	A	1.293e^-4	0.249	INTRON CG33095 & 1 other
2R	16160717	2R_16160717_SNP [dm3] 2R_20273212_SNP [dm6]	G	A	1.294e^-4	0.249	INTRON CG10444	TF binding site mE1_TFBS_cad
2L	5971104	2L_5971104_SNP [dm3] 2L_5971104_SNP [dm6]	G	C	1.298e^-4	0.249	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2L	5071171	2L_5071171_SNP [dm3] 2L_5071171_SNP [dm6]	A	G	1.300e^-4	0.249	UPSTREAM CR45305 DOWNSTREAM qtc & 1 other INTRON RpL37A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	4832722	2L_4832722_SNP [dm3] 2L_4832722_SNP [dm6]	A	G	1.300e^-4	0.249	INTRON Ir25a
2L	1655454	2L_1655454_SNP [dm3] 2L_1655454_SNP [dm6]	C	A	1.303e^-4	0.249	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
X	10098602	X_10098602_SNP [dm3] X_10204569_SNP [dm6]	C	T	1.303e^-4	0.249	DOWNSTREAM CG15309 INTRON CR44894 EXON CR32690
3L	8841454	3L_8841454_SNP [dm3] 3L_8848354_SNP [dm6]	A	G	1.305e^-4	0.249	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13557293	3R_13557293_SNP [dm3] 3R_17731571_SNP [dm6]	C	T	1.307e^-4	0.249	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10400242	X_10400242_SNP [dm3] X_10506209_SNP [dm6]	T	A	1.309e^-4	0.249	INTRON spri
3L	62478	3L_62478_SNP [dm3] 3L_62478_SNP [dm6]	C	T	1.309e^-4	0.249	INTERGENIC
3R	23892522	3R_23892522_SNP [dm3] 3R_28066800_SNP [dm6]	C	T	1.310e^-4	0.249	INTRON CG34362
X	16436438	X_16436438_SNP [dm3] X_16542405_SNP [dm6]	C	T	1.317e^-4	0.25	UTR_3_PRIME CG9902
3R	5919720	3R_5919720_SNP [dm3] 3R_10093998_SNP [dm6]	A	T	1.318e^-4	0.25	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13148063	2R_13148063_SNP [dm3] 2R_17260558_SNP [dm6]	C	G	1.320e^-4	0.25	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
X	21444182	X_21444182_SNP [dm3] X_21573155_SNP [dm6]	A	C	1.320e^-4	0.25	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	966171	2R_966171_SNP [dm3] 2R_5078666_SNP [dm6]	G	A	1.323e^-4	0.251	INTERGENIC
3L	16898465	3L_16898465_SNP [dm3] 3L_16905365_SNP [dm6]	T	G	1.327e^-4	0.251	NON_SYNONYMOUS_CODING Lmpt INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15889129	X_15889129_SNP [dm3] X_15995096_SNP [dm6]	G	A	1.331e^-4	0.252	UTR_3_PRIME exd
3L	18209772	3L_18209772_SNP [dm3] 3L_18216672_SNP [dm6]	C	G	1.334e^-4	0.252	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5874729	2R_5874729_SNP [dm3] 2R_9987224_SNP [dm6]	A	C	1.335e^-4	0.252	DOWNSTREAM CR45324 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	26373710	3R_26373710_SNP [dm3] 3R_30547988_SNP [dm6]	C	A	1.336e^-4	0.252	INTRON tmod
3L	3364665	3L_3364665_SNP [dm3] 3L_3364665_SNP [dm6]	C	A	1.337e^-4	0.252	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19484389	2L_19484389_SNP [dm3] 2L_19484389_SNP [dm6]	A	G	1.338e^-4	0.252	SYNONYMOUS_CODING CG10195 UPSTREAM CG13084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6003440	3R_6003440_SNP [dm3] 3R_10177718_SNP [dm6]	A	T	1.339e^-4	0.252	INTRON CG12814
X	12173912	X_12173912_SNP [dm3] X_12279879_SNP [dm6]	G	A	1.343e^-4	0.252	INTRON Ten-a
X	11823737	X_11823737_SNP [dm3] X_11929704_SNP [dm6]	T	A	1.346e^-4	0.252	SPLICE_SITE_REGION CG10362 INTRON CG10362

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_2R phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results