DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.146e^-19)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	<2e-16

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	37.1648	8.5066e-09
In_2R_NS	8.6694	0.0131

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

5329 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	7.868e^-9	0.015	INTRON Pde9
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	2.505e^-8	0.019	INTRON Pde9
3R	27081378	3R_27081378_SNP [dm3] 3R_31255656_SNP [dm6]	C	A	3.976e^-8	0.019	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10420231	2L_10420231_SNP [dm3] 2L_10420231_SNP [dm6]	A	C	4.108e^-8	0.019	DOWNSTREAM pie INTRON RfC3	TF binding site mE1_TFBS_ttk
2L	8895468	2L_8895468_SNP [dm3] 2L_8895468_SNP [dm6]	A	T	5.190e^-8	0.019	INTERGENIC
2L	13020068	2L_13020068_DEL [dm3] 2L_13020068_DEL [dm6]	AAA	A	8.805e^-8	0.02	UPSTREAM CG9934 INTRON A16	TF binding site mE1_TFBS_cad
2L	10693487	2L_10693487_SNP [dm3] 2L_10693487_SNP [dm6]	T	C	8.969e^-8	0.02	NON_SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	5188939	2L_5188939_SNP [dm3] 2L_5188939_SNP [dm6]	G	A	1.056e^-7	0.02	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5158162	2L_5158162_SNP [dm3] 2L_5158162_SNP [dm6]	T	A	1.105e^-7	0.02	UTR_3_PRIME Msp300 INTRON Msp300
2R	16489867	2R_16489867_SNP [dm3] 2R_20602362_SNP [dm6]	A	C	1.138e^-7	0.02	UPSTREAM bl INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4657401	2L_4657401_SNP [dm3] 2L_4657401_SNP [dm6]	A	G	1.155e^-7	0.02	INTERGENIC
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	1.370e^-7	0.021	DOWNSTREAM CG42713 INTERGENIC
2L	5076791	2L_5076791_DEL [dm3] 2L_5076791_DEL [dm6]	GGTG	G	1.591e^-7	0.022	INTRON pgant5
2L	5074881	2L_5074881_SNP [dm3] 2L_5074881_SNP [dm6]	A	G	1.846e^-7	0.022	INTRON pgant5
3L	18460323	3L_18460323_SNP [dm3] 3L_18467223_SNP [dm6]	T	C	1.982e^-7	0.022	INTERGENIC
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	2.069e^-7	0.022	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
3L	18460309	3L_18460309_SNP [dm3] 3L_18467209_SNP [dm6]	A	G	2.080e^-7	0.022	INTERGENIC
3R	5749736	3R_5749736_SNP [dm3] 3R_9924014_SNP [dm6]	G	T	2.081e^-7	0.022	INTRON Glut4EF
X	9083143	X_9083143_SNP [dm3] X_9189110_SNP [dm6]	G	A	2.340e^-7	0.023	UTR_3_PRIME mei-P26 DOWNSTREAM CG12115
3R	14591678	3R_14591678_SNP [dm3] 3R_18765956_SNP [dm6]	G	C	2.546e^-7	0.024	INTRON CG7720
X	12722141	X_12722141_SNP [dm3] X_12828108_SNP [dm6]	C	T	2.786e^-7	0.024	INTRON Pde9
3L	18453521	3L_18453521_SNP [dm3] 3L_18460421_SNP [dm6]	A	T	2.805e^-7	0.024	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	2.910e^-7	0.024	INTRON CG4829
3L	10091812	3L_10091812_SNP [dm3] 3L_10098712_SNP [dm6]	G	C	3.217e^-7	0.024	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3R	5749737	3R_5749737_SNP [dm3] 3R_9924015_SNP [dm6]	T	A	3.227e^-7	0.024	INTRON Glut4EF
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	3.592e^-7	0.026	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	3.970e^-7	0.027	UPSTREAM CG42713 INTERGENIC
2L	17868806	2L_17868806_SNP [dm3] 2L_17868806_SNP [dm6]	T	A	4.346e^-7	0.027	INTRON CadN2
3L	18460729	3L_18460729_SNP [dm3] 3L_18467629_SNP [dm6]	C	A	4.430e^-7	0.027	INTERGENIC
3L	13072190	3L_13072190_SNP [dm3] 3L_13079090_SNP [dm6]	A	T	4.527e^-7	0.027	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	14591888	3R_14591888_SNP [dm3] 3R_18766166_SNP [dm6]	C	T	4.785e^-7	0.027	INTRON CG7720
3L	3848033	3L_3848033_SNP [dm3] 3L_3848033_SNP [dm6]	C	T	4.843e^-7	0.027	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	5071171	2L_5071171_SNP [dm3] 2L_5071171_SNP [dm6]	A	G	5.036e^-7	0.027	UPSTREAM CR45305 DOWNSTREAM qtc & 1 other INTRON RpL37A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	17868789	2L_17868789_SNP [dm3] 2L_17868789_SNP [dm6]	C	T	5.296e^-7	0.027	INTRON CadN2
2L	5193348	2L_5193348_SNP [dm3] 2L_5193348_SNP [dm6]	A	T	5.346e^-7	0.027	SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	5.547e^-7	0.027	INTERGENIC
2L	17878801	2L_17878801_SNP [dm3] 2L_17878801_SNP [dm6]	A	G	5.603e^-7	0.027	INTERGENIC
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	5.746e^-7	0.027	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8893211	2L_8893211_SNP [dm3] 2L_8893211_SNP [dm6]	G	A	5.770e^-7	0.027	INTERGENIC
2L	2640597	2L_2640597_SNP [dm3] 2L_2640597_SNP [dm6]	T	G	5.819e^-7	0.027	INTERGENIC
2L	5079419	2L_5079419_SNP [dm3] 2L_5079419_SNP [dm6]	C	T	6.135e^-7	0.028	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18444671	3L_18444671_SNP [dm3] 3L_18451571_SNP [dm6]	T	C	6.616e^-7	0.03	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	18459325	3L_18459325_SNP [dm3] 3L_18466225_SNP [dm6]	G	A	6.884e^-7	0.03	INTERGENIC
2L	5069554	2L_5069554_SNP [dm3] 2L_5069554_SNP [dm6]	C	T	7.544e^-7	0.032	DOWNSTREAM mir-2495 & 1 other INTRON qtc
2L	5071179	2L_5071179_SNP [dm3] 2L_5071179_SNP [dm6]	T	C	7.912e^-7	0.033	UPSTREAM CR45305 DOWNSTREAM qtc & 1 other INTRON RpL37A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	12827807	2L_12827807_SNP [dm3] 2L_12827807_SNP [dm6]	C	G	8.276e^-7	0.034	INTERGENIC
2L	14326965	2L_14326965_SNP [dm3] 2L_14326965_SNP [dm6]	C	T	8.639e^-7	0.034	SYNONYMOUS_CODING wb DOWNSTREAM wb
2L	5076084	2L_5076084_SNP [dm3] 2L_5076084_SNP [dm6]	G	T	8.704e^-7	0.034	INTRON pgant5
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	8.783e^-7	0.034	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	9.273e^-7	0.034	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15319467	2L_15319467_SNP [dm3] 2L_15319467_SNP [dm6]	A	G	9.311e^-7	0.034	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9410112	X_9410112_INS [dm3] X_9516079_INS [dm6]	A	AC	9.476e^-7	0.034	INTRON CG32700
X	12239910	X_12239910_SNP [dm3] X_12345877_SNP [dm6]	C	T	9.681e^-7	0.034	INTERGENIC
2L	18676857	2L_18676857_SNP [dm3] 2L_18676857_SNP [dm6]	A	G	1.095e^-6	0.036	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM CG31751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5118987	2L_5118987_SNP [dm3] 2L_5118987_SNP [dm6]	A	T	1.097e^-6	0.036	INTRON Msp300
3L	18444670	3L_18444670_SNP [dm3] 3L_18451570_SNP [dm6]	G	A	1.130e^-6	0.036	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5144810	2L_5144810_DEL [dm3] 2L_5144810_DEL [dm6]	GTGTATCTGGGAT...	G	1.182e^-6	0.036	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15304111	2L_15304111_SNP [dm3] 2L_15304111_SNP [dm6]	A	T	1.183e^-6	0.036	INTERGENIC
2L	14542303	2L_14542303_SNP [dm3] 2L_14542303_SNP [dm6]	A	G	1.187e^-6	0.036	INTERGENIC
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	1.192e^-6	0.036	INTRON CG34348
2L	15319276	2L_15319276_SNP [dm3] 2L_15319276_SNP [dm6]	G	A	1.216e^-6	0.036	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5144828	2L_5144828_SNP [dm3] 2L_5144828_SNP [dm6]	A	G	1.227e^-6	0.036	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12722144	X_12722144_SNP [dm3] X_12828111_SNP [dm6]	C	G	1.246e^-6	0.036	INTRON Pde9
X	7037223	X_7037223_SNP [dm3] X_7143190_SNP [dm6]	G	C	1.253e^-6	0.036	INTRON CG9650
2L	17867777	2L_17867777_SNP [dm3] 2L_17867777_SNP [dm6]	C	A	1.257e^-6	0.036	INTRON CadN2
2L	14544975	2L_14544975_SNP [dm3] 2L_14544975_SNP [dm6]	C	G	1.265e^-6	0.036	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15479915	X_15479915_SNP [dm3] X_15585882_SNP [dm6]	C	T	1.277e^-6	0.036	UTR_3_PRIME CG9220 DOWNSTREAM CG8097	TF binding site mE1_TFBS_cad
X	5502595	X_5502595_SNP [dm3] X_5608562_SNP [dm6]	C	A	1.356e^-6	0.037	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5076070	2L_5076070_SNP [dm3] 2L_5076070_SNP [dm6]	A	T	1.366e^-6	0.037	INTRON pgant5
3R	3498858	3R_3498858_SNP [dm3] 3R_7673136_SNP [dm6]	C	G	1.418e^-6	0.038	INTRON Nlg1
2L	5139666	2L_5139666_SNP [dm3] 2L_5139666_SNP [dm6]	C	T	1.464e^-6	0.039	NON_SYNONYMOUS_CODING Msp300
3L	18730260	3L_18730260_SNP [dm3] 3L_18737160_SNP [dm6]	G	A	1.512e^-6	0.039	INTERGENIC
3L	18730262	3L_18730262_SNP [dm3] 3L_18737162_SNP [dm6]	C	T	1.646e^-6	0.041	INTERGENIC
2L	17879005	2L_17879005_SNP [dm3] 2L_17879005_SNP [dm6]	C	T	1.696e^-6	0.041	INTERGENIC
3R	5427721	3R_5427721_SNP [dm3] 3R_9601999_SNP [dm6]	C	G	1.708e^-6	0.041	INTRON CG8312
3R	5427722	3R_5427722_SNP [dm3] 3R_9602000_SNP [dm6]	C	A	1.708e^-6	0.041	INTRON CG8312
2L	8890520	2L_8890520_SNP [dm3] 2L_8890520_SNP [dm6]	T	A	1.712e^-6	0.041	UPSTREAM CG42713 INTERGENIC
2R	19138692	2R_19138692_SNP [dm3] 2R_23251169_SNP [dm6]	C	A	1.733e^-6	0.041	INTERGENIC
3L	18473922	3L_18473922_SNP [dm3] 3L_18480822_SNP [dm6]	A	T	1.762e^-6	0.041	INTERGENIC
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	1.774e^-6	0.041	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
2L	17868621	2L_17868621_SNP [dm3] 2L_17868621_SNP [dm6]	C	A	1.778e^-6	0.041	INTRON CadN2
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	1.826e^-6	0.041	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
3R	15515037	3R_15515037_SNP [dm3] 3R_19689315_SNP [dm6]	G	A	1.826e^-6	0.041	INTRON Naam
2L	8889085	2L_8889085_SNP [dm3] 2L_8889085_SNP [dm6]	C	T	1.829e^-6	0.041	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	1.922e^-6	0.042	INTRON Pde9
3L	8463332	3L_8463332_SNP [dm3] 3L_8470232_SNP [dm6]	C	T	2.125e^-6	0.046	INTRON Gug
3L	3492624	3L_3492624_SNP [dm3] 3L_3492624_SNP [dm6]	C	A	2.185e^-6	0.046	INTRON CG42324
2L	4657379	2L_4657379_SNP [dm3] 2L_4657379_SNP [dm6]	A	G	2.195e^-6	0.046	INTERGENIC
2L	18676884	2L_18676884_SNP [dm3] 2L_18676884_SNP [dm6]	C	T	2.213e^-6	0.046	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM CG31751	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5193516	2L_5193516_SNP [dm3] 2L_5193516_SNP [dm6]	T	A	2.233e^-6	0.046	NON_SYNONYMOUS_CODING Msp300 EXON snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18672643	2L_18672643_SNP [dm3] 2L_18672643_SNP [dm6]	T	A	2.312e^-6	0.046	NON_SYNONYMOUS_CODING CG43339 DOWNSTREAM Mst36Fb
2L	17868295	2L_17868295_SNP [dm3] 2L_17868295_SNP [dm6]	G	T	2.315e^-6	0.046	INTRON CadN2
2L	5059841	2L_5059841_SNP [dm3] 2L_5059841_SNP [dm6]	T	C	2.328e^-6	0.046	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	10148017	X_10148017_SNP [dm3] X_10253984_SNP [dm6]	G	C	2.331e^-6	0.046	INTRON Hk
2L	672959	2L_672959_SNP [dm3] 2L_672959_SNP [dm6]	A	G	2.428e^-6	0.048	INTRON ds
3L	3871831	3L_3871831_SNP [dm3] 3L_3871831_SNP [dm6]	C	A	2.447e^-6	0.048	INTERGENIC
3L	18453726	3L_18453726_SNP [dm3] 3L_18460626_SNP [dm6]	T	A	2.500e^-6	0.048	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10016616	3L_10016616_SNP [dm3] 3L_10023516_SNP [dm6]	A	G	2.508e^-6	0.048	INTRON dpr6
3L	18450365	3L_18450365_SNP [dm3] 3L_18457265_SNP [dm6]	C	T	2.571e^-6	0.049	UPSTREAM CR44670 EXON CR44671
2L	17868790	2L_17868790_SNP [dm3] 2L_17868790_SNP [dm6]	G	T	2.644e^-6	0.049	INTRON CadN2
2L	5076755	2L_5076755_SNP [dm3] 2L_5076755_SNP [dm6]	G	A	2.671e^-6	0.049	INTRON pgant5
2L	15319282	2L_15319282_SNP [dm3] 2L_15319282_SNP [dm6]	A	G	2.684e^-6	0.049	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14552042	2L_14552042_SNP [dm3] 2L_14552042_SNP [dm6]	A	T	2.794e^-6	0.05	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14552047	2L_14552047_SNP [dm3] 2L_14552047_SNP [dm6]	C	G	2.794e^-6	0.05	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	810200	3R_810200_INS [dm3] 3R_4984478_INS [dm6]	A	ACA	2.819e^-6	0.05	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	18447380	3L_18447380_SNP [dm3] 3L_18454280_SNP [dm6]	T	C	2.862e^-6	0.05	INTERGENIC
3L	18447381	3L_18447381_SNP [dm3] 3L_18454281_SNP [dm6]	T	A	2.862e^-6	0.05	INTERGENIC
3R	10044141	3R_10044141_SNP [dm3] 3R_14218419_SNP [dm6]	G	A	2.880e^-6	0.05	SYNONYMOUS_CODING CG31326 UPSTREAM CG9649
2L	17867776	2L_17867776_SNP [dm3] 2L_17867776_SNP [dm6]	C	G	2.910e^-6	0.05	INTRON CadN2
2L	15319459	2L_15319459_SNP [dm3] 2L_15319459_SNP [dm6]	T	C	2.996e^-6	0.051	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5190228	2L_5190228_SNP [dm3] 2L_5190228_SNP [dm6]	G	T	3.039e^-6	0.051	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13341541	X_13341541_SNP [dm3] X_13447508_SNP [dm6]	C	T	3.073e^-6	0.051	INTRON Neto
3L	18447383	3L_18447383_SNP [dm3] 3L_18454283_SNP [dm6]	T	A	3.078e^-6	0.051	INTERGENIC
2L	12351719	2L_12351719_SNP [dm3] 2L_12351719_SNP [dm6]	C	A	3.135e^-6	0.052	UTR_5_PRIME bru-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	1288929	3R_1288929_SNP [dm3] 3R_5463207_SNP [dm6]	A	C	3.166e^-6	0.052	UPSTREAM PEK INTRON PEK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18650373	3L_18650373_SNP [dm3] 3L_18657273_SNP [dm6]	G	T	3.312e^-6	0.054	INTRON MYPT-75D
3L	8609287	3L_8609287_SNP [dm3] 3L_8616187_SNP [dm6]	G	A	3.392e^-6	0.054	UTR_3_PRIME CG6282
X	10667985	X_10667985_SNP [dm3] X_10773952_SNP [dm6]	C	T	3.552e^-6	0.056	INTRON CG15211
X	10045050	X_10045050_SNP [dm3] X_10151017_SNP [dm6]	G	A	3.708e^-6	0.058	INTRON CR44894
3L	4485062	3L_4485062_SNP [dm3] 3L_4485062_SNP [dm6]	A	G	3.830e^-6	0.059	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	17882803	2L_17882803_SNP [dm3] 2L_17882803_SNP [dm6]	A	C	3.836e^-6	0.059	INTERGENIC
3L	1565132	3L_1565132_SNP [dm3] 3L_1565132_SNP [dm6]	C	T	3.839e^-6	0.059	UPSTREAM CG12003 INTRON CG7879	TF binding site mE1_TFBS_sens
2L	18668432	2L_18668432_SNP [dm3] 2L_18668432_SNP [dm6]	A	G	3.882e^-6	0.059	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17852686	3R_17852686_SNP [dm3] 3R_22026964_SNP [dm6]	A	G	3.928e^-6	0.059	NON_SYNONYMOUS_CODING Cchl UPSTREAM ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17868257	2L_17868257_SNP [dm3] 2L_17868257_SNP [dm6]	T	G	3.937e^-6	0.059	INTRON CadN2
2L	672963	2L_672963_INS [dm3] 2L_672963_INS [dm6]	T	TTT	4.036e^-6	0.06	INTRON ds
X	9959436	X_9959436_SNP [dm3] X_10065403_SNP [dm6]	A	G	4.054e^-6	0.06	INTRON CG15312
X	7035046	X_7035046_SNP [dm3] X_7141013_SNP [dm6]	T	A	4.069e^-6	0.06	INTRON CG9650
2L	17873128	2L_17873128_SNP [dm3] 2L_17873128_SNP [dm6]	C	A	4.112e^-6	0.06	INTRON CadN2
2L	17867817	2L_17867817_SNP [dm3] 2L_17867817_SNP [dm6]	C	T	4.147e^-6	0.06	INTRON CadN2
3R	810190	3R_810190_INS [dm3] 3R_4984468_INS [dm6]	T	TG	4.237e^-6	0.061	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	5059830	2L_5059830_SNP [dm3] 2L_5059830_SNP [dm6]	G	A	4.295e^-6	0.061	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
2L	2611366	2L_2611366_SNP [dm3] 2L_2611366_SNP [dm6]	C	T	4.378e^-6	0.061	DOWNSTREAM CG15395 INTERGENIC
3L	18472271	3L_18472271_DEL [dm3] 3L_18479171_DEL [dm6]	TT	T	4.389e^-6	0.061	EXON CR44673
2L	5084918	2L_5084918_SNP [dm3] 2L_5084918_SNP [dm6]	G	A	4.450e^-6	0.062	INTRON pgant5	TF binding site mE1_TFBS_cad
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	4.480e^-6	0.062	INTRON hth
2L	17896790	2L_17896790_SNP [dm3] 2L_17896790_SNP [dm6]	A	T	4.565e^-6	0.062	INTERGENIC
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	4.599e^-6	0.062	INTRON Pkcdelta
2R	16491199	2R_16491199_SNP [dm3] 2R_20603694_SNP [dm6]	C	T	4.601e^-6	0.062	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	19138662	2R_19138662_SNP [dm3] 2R_23251139_SNP [dm6]	G	T	4.691e^-6	0.063	INTERGENIC
2L	17868341	2L_17868341_SNP [dm3] 2L_17868341_SNP [dm6]	C	T	4.922e^-6	0.065	INTRON CadN2
2L	5079944	2L_5079944_SNP [dm3] 2L_5079944_SNP [dm6]	G	A	4.957e^-6	0.065	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
2L	5284680	2L_5284680_SNP [dm3] 2L_5284680_SNP [dm6]	T	C	5.011e^-6	0.066	INTERGENIC
3L	18447385	3L_18447385_SNP [dm3] 3L_18454285_SNP [dm6]	G	T	5.071e^-6	0.066	INTERGENIC
3L	708649	3L_708649_SNP [dm3] 3L_708649_SNP [dm6]	G	T	5.107e^-6	0.066	UTR_3_PRIME CkIIalpha-i3 UPSTREAM CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_ttk
2L	15304090	2L_15304090_SNP [dm3] 2L_15304090_SNP [dm6]	G	A	5.110e^-6	0.066	INTERGENIC
3R	15463380	3R_15463380_SNP [dm3] 3R_19637658_SNP [dm6]	G	C	5.207e^-6	0.066	INTRON subdued
X	16416039	X_16416039_SNP [dm3] X_16522006_SNP [dm6]	T	C	5.224e^-6	0.066	DOWNSTREAM Cnx14D INTRON para
X	16416053	X_16416053_SNP [dm3] X_16522020_SNP [dm6]	C	T	5.231e^-6	0.066	DOWNSTREAM Cnx14D INTRON para
2L	15316932	2L_15316932_SNP [dm3] 2L_15316932_SNP [dm6]	G	C	5.388e^-6	0.067	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	10833262	2L_10833262_SNP [dm3] 2L_10833262_SNP [dm6]	A	C	5.397e^-6	0.067	INTRON Nos
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	5.513e^-6	0.068	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18670863	2L_18670863_SNP [dm3] 2L_18670863_SNP [dm6]	C	T	5.621e^-6	0.068	UPSTREAM CG43338 DOWNSTREAM CG43339 INTRON CG43338
X	8829226	X_8829226_SNP [dm3] X_8935193_SNP [dm6]	T	C	5.625e^-6	0.068	INTRON rdgA
2L	4832718	2L_4832718_SNP [dm3] 2L_4832718_SNP [dm6]	C	A	5.642e^-6	0.068	INTRON Ir25a
X	20480981	X_20480981_SNP [dm3] X_20609954_SNP [dm6]	C	T	5.681e^-6	0.068	INTRON RunxA
2L	1719525	2L_1719525_SNP [dm3] 2L_1719525_SNP [dm6]	G	A	5.710e^-6	0.068	INTRON Rim2
3L	7109887	3L_7109887_SNP [dm3] 3L_7116787_SNP [dm6]	T	C	5.832e^-6	0.069	INTRON form3
2L	6124789	2L_6124789_SNP [dm3] 2L_6124789_SNP [dm6]	C	T	5.847e^-6	0.069	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
X	20481025	X_20481025_SNP [dm3] X_20609998_SNP [dm6]	G	A	5.864e^-6	0.069	INTRON RunxA
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	5.963e^-6	0.069	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	5.963e^-6	0.069	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
2L	12416874	2L_12416874_SNP [dm3] 2L_12416874_SNP [dm6]	C	G	6.086e^-6	0.07	INTRON vir-1
2L	5139613	2L_5139613_SNP [dm3] 2L_5139613_SNP [dm6]	C	T	6.121e^-6	0.07	SYNONYMOUS_CODING Msp300
2L	4566244	2L_4566244_SNP [dm3] 2L_4566244_SNP [dm6]	A	T	6.271e^-6	0.071	INTRON dp
X	20023391	X_20023391_SNP [dm3] X_20129358_SNP [dm6]	T	A	6.306e^-6	0.071	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	6.339e^-6	0.071	INTERGENIC
3R	26373786	3R_26373786_SNP [dm3] 3R_30548064_SNP [dm6]	A	G	6.488e^-6	0.072	INTRON tmod
2L	3937192	2L_3937192_SNP [dm3] 2L_3937192_SNP [dm6]	A	C	6.515e^-6	0.072	INTRON fred
3L	12614517	3L_12614517_SNP [dm3] 3L_12621417_SNP [dm6]	G	A	6.597e^-6	0.072	UTR_3_PRIME caup
2L	17869516	2L_17869516_SNP [dm3] 2L_17869516_SNP [dm6]	T	A	6.614e^-6	0.072	INTRON CadN2
X	12753624	X_12753624_SNP [dm3] X_12859591_SNP [dm6]	G	A	6.639e^-6	0.072	INTRON Pde9
3L	9824569	3L_9824569_SNP [dm3] 3L_9831469_SNP [dm6]	T	C	6.668e^-6	0.072	INTRON CG43897	TF binding site mE1_TFBS_cad
X	9185474	X_9185474_SNP [dm3] X_9291441_SNP [dm6]	T	A	6.716e^-6	0.072	INTRON lz
2L	4655226	2L_4655226_SNP [dm3] 2L_4655226_SNP [dm6]	C	G	6.743e^-6	0.072	INTERGENIC
2L	5119308	2L_5119308_SNP [dm3] 2L_5119308_SNP [dm6]	G	A	6.807e^-6	0.072	INTRON Msp300
3L	23011370	3L_23011370_SNP [dm3] 3L_23018270_SNP [dm6]	T	G	6.819e^-6	0.072	INTRON nrm	transposable element FlyBase
3L	18862716	3L_18862716_SNP [dm3] 3L_18869616_SNP [dm6]	C	A	6.856e^-6	0.072	SYNONYMOUS_CODING CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	15316937	2L_15316937_SNP [dm3] 2L_15316937_SNP [dm6]	G	A	6.869e^-6	0.072	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14728302	3R_14728302_SNP [dm3] 3R_18902580_SNP [dm6]	A	T	6.984e^-6	0.072	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
X	11876380	X_11876380_SNP [dm3] X_11982347_SNP [dm6]	T	A	6.988e^-6	0.072	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2813553	2R_2813553_SNP [dm3] 2R_6926048_SNP [dm6]	A	C	7.117e^-6	0.073	UTR_3_PRIME mim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4832722	2L_4832722_SNP [dm3] 2L_4832722_SNP [dm6]	A	G	7.155e^-6	0.073	INTRON Ir25a
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	7.163e^-6	0.073	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3937240	2L_3937240_SNP [dm3] 2L_3937240_SNP [dm6]	C	G	7.409e^-6	0.075	INTRON fred
3L	2046684	3L_2046684_SNP [dm3] 3L_2046684_SNP [dm6]	A	T	7.440e^-6	0.075	INTRON sls
3L	18447251	3L_18447251_SNP [dm3] 3L_18454151_SNP [dm6]	G	T	7.563e^-6	0.076	INTERGENIC
2L	16545876	2L_16545876_SNP [dm3] 2L_16545876_SNP [dm6]	C	T	7.626e^-6	0.076	INTRON CG42389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	5284643	2L_5284643_SNP [dm3] 2L_5284643_SNP [dm6]	C	A	7.695e^-6	0.076	INTERGENIC
3L	12614470	3L_12614470_SNP [dm3] 3L_12621370_SNP [dm6]	C	T	7.710e^-6	0.076	UTR_3_PRIME caup
3R	791838	3R_791838_SNP [dm3] 3R_4966116_SNP [dm6]	A	T	7.712e^-6	0.076	INTRON CG1124	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2L	11591403	2L_11591403_SNP [dm3] 2L_11591403_SNP [dm6]	T	C	7.795e^-6	0.076	UTR_3_PRIME Acp33A INTRON kek2
2L	15319340	2L_15319340_SNP [dm3] 2L_15319340_SNP [dm6]	A	G	7.841e^-6	0.076	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18676796	2L_18676796_SNP [dm3] 2L_18676796_SNP [dm6]	A	T	7.948e^-6	0.076	NON_SYNONYMOUS_CODING Mst36Fa UPSTREAM CG31751	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5139787	2L_5139787_SNP [dm3] 2L_5139787_SNP [dm6]	C	T	7.953e^-6	0.076	SYNONYMOUS_CODING Msp300
3L	21204151	3L_21204151_SNP [dm3] 3L_21211051_SNP [dm6]	G	C	8.065e^-6	0.077	UPSTREAM CG10510 INTRON CG10508
X	16416030	X_16416030_INS [dm3] X_16521997_INS [dm6]	C	CAAAACTAA	8.096e^-6	0.077	DOWNSTREAM Cnx14D INTRON para
2R	19138613	2R_19138613_DEL [dm3] 2R_23251090_DEL [dm6]	ATAGAAAGGTAGCTCGTTTC...	A	8.109e^-6	0.077	INTERGENIC
2L	15319463	2L_15319463_SNP [dm3] 2L_15319463_SNP [dm6]	C	A	8.148e^-6	0.077	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19112795	X_19112795_SNP [dm3] X_19218762_SNP [dm6]	T	G	8.289e^-6	0.078	INTERGENIC
2L	18677081	2L_18677081_SNP [dm3] 2L_18677081_SNP [dm6]	G	C	8.371e^-6	0.078	UPSTREAM CG31751 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3R	810198	3R_810198_SNP [dm3] 3R_4984476_SNP [dm6]	C	A	8.400e^-6	0.078	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	10401921	X_10401921_SNP [dm3] X_10507888_SNP [dm6]	T	C	8.472e^-6	0.078	INTRON spri
2L	15319295	2L_15319295_SNP [dm3] 2L_15319295_SNP [dm6]	T	C	8.532e^-6	0.078	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11815569	X_11815569_INS [dm3] X_11921536_INS [dm6]	T	TAT	8.852e^-6	0.08	UPSTREAM CR32660 DOWNSTREAM Sclp INTRON Sclp
3L	18444611	3L_18444611_SNP [dm3] 3L_18451511_SNP [dm6]	C	A	8.853e^-6	0.08	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16040191	X_16040191_SNP [dm3] X_16146158_SNP [dm6]	C	T	8.903e^-6	0.08	INTRON disco-r	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17872634	2L_17872634_SNP [dm3] 2L_17872634_SNP [dm6]	A	G	8.910e^-6	0.08	INTRON CadN2
3R	16044509	3R_16044509_SNP [dm3] 3R_20218787_SNP [dm6]	G	A	8.927e^-6	0.08	INTRON Nlg4
2L	5079950	2L_5079950_SNP [dm3] 2L_5079950_SNP [dm6]	G	A	9.038e^-6	0.081	INTRON pgant5	TF binding site BDTNP1_TFBS_dl
X	11243109	X_11243109_SNP [dm3] X_11349076_SNP [dm6]	A	C	9.215e^-6	0.082	UTR_5_PRIME CG1738 UPSTREAM CG11752 DOWNSTREAM CG11756	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9242875	3L_9242875_SNP [dm3] 3L_9249775_SNP [dm6]	G	A	9.278e^-6	0.082	UPSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5284412	2L_5284412_SNP [dm3] 2L_5284412_SNP [dm6]	A	T	9.321e^-6	0.082	INTERGENIC
3R	810193	3R_810193_SNP [dm3] 3R_4984471_SNP [dm6]	C	A	9.419e^-6	0.082	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	2199069	3R_2199069_SNP [dm3] 3R_6373347_SNP [dm6]	T	G	9.440e^-6	0.082	NON_SYNONYMOUS_CODING CG1041	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2603439	3L_2603439_SNP [dm3] 3L_2603439_SNP [dm6]	G	A	9.461e^-6	0.082	SYNONYMOUS_CODING Pxn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	9.675e^-6	0.084	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16544874	2L_16544874_SNP [dm3] 2L_16544874_SNP [dm6]	A	C	9.836e^-6	0.085	UPSTREAM CG42389 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	12416891	2L_12416891_SNP [dm3] 2L_12416891_SNP [dm6]	T	C	9.879e^-6	0.085	INTRON vir-1
2L	3937190	2L_3937190_SNP [dm3] 2L_3937190_SNP [dm6]	A	T	1.011e^-5	0.085	INTRON fred
3R	810197	3R_810197_SNP [dm3] 3R_4984475_SNP [dm6]	T	A	1.012e^-5	0.085	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	2659823	2L_2659823_SNP [dm3] 2L_2659823_SNP [dm6]	A	T	1.019e^-5	0.085	INTERGENIC
2L	525197	2L_525197_SNP [dm3] 2L_525197_SNP [dm6]	C	T	1.021e^-5	0.085	INTRON ush	TF binding site mE1_TFBS_inv mE1_TFBS_Kr
3R	10341249	3R_10341249_SNP [dm3] 3R_14515527_SNP [dm6]	C	G	1.025e^-5	0.085	UTR_3_PRIME Pde6
3L	18728216	3L_18728216_SNP [dm3] 3L_18735116_SNP [dm6]	C	G	1.026e^-5	0.085	INTERGENIC
X	6691285	X_6691285_SNP [dm3] X_6797252_SNP [dm6]	C	A	1.033e^-5	0.086	INTRON C3G
X	20462923	X_20462923_SNP [dm3] X_20591896_SNP [dm6]	A	G	1.037e^-5	0.086	UTR_3_PRIME RunxA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24105628	3R_24105628_SNP [dm3] 3R_28279906_SNP [dm6]	C	T	1.040e^-5	0.086	INTERGENIC
2L	2659993	2L_2659993_SNP [dm3] 2L_2659993_SNP [dm6]	T	A	1.075e^-5	0.087	INTERGENIC
X	16416025	X_16416025_INS [dm3] X_16521992_INS [dm6]	A	ACGCACAT	1.077e^-5	0.087	DOWNSTREAM Cnx14D INTRON para
3R	5919720	3R_5919720_SNP [dm3] 3R_10093998_SNP [dm6]	A	T	1.077e^-5	0.087	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18859273	3L_18859273_SNP [dm3] 3L_18866173_SNP [dm6]	C	A	1.078e^-5	0.087	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15319396	2L_15319396_SNP [dm3] 2L_15319396_SNP [dm6]	G	T	1.083e^-5	0.087	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18747898	3L_18747898_SNP [dm3] 3L_18754798_SNP [dm6]	T	C	1.089e^-5	0.087	INTRON ftz-f1
3R	20380537	3R_20380537_SNP [dm3] 3R_24554815_SNP [dm6]	C	T	1.108e^-5	0.088	SYNONYMOUS_CODING Esyt2 UPSTREAM tRNA:D:96A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9557704	2L_9557704_SNP [dm3] 2L_9557704_SNP [dm6]	G	A	1.119e^-5	0.088	INTRON jp
2L	11025008	2L_11025008_DEL [dm3] 2L_11025008_DEL [dm6]	CTAATTCCGTTTTTCCCAAC...	C	1.122e^-5	0.088	INTRON Samuel
3R	6052903	3R_6052903_SNP [dm3] 3R_10227181_SNP [dm6]	A	G	1.128e^-5	0.088	INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	12815034	2L_12815034_SNP [dm3] 2L_12815034_SNP [dm6]	C	T	1.134e^-5	0.088	INTERGENIC
2L	12490046	2L_12490046_SNP [dm3] 2L_12490046_SNP [dm6]	A	G	1.135e^-5	0.088	INTRON bun
2L	4502501	2L_4502501_SNP [dm3] 2L_4502501_SNP [dm6]	G	T	1.138e^-5	0.088	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10044201	3R_10044201_SNP [dm3] 3R_14218479_SNP [dm6]	T	A	1.140e^-5	0.088	SYNONYMOUS_CODING CG31326 UPSTREAM CG9649
2L	976015	2L_976015_SNP [dm3] 2L_976015_SNP [dm6]	G	T	1.147e^-5	0.088	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	18443911	3L_18443911_SNP [dm3] 3L_18450811_SNP [dm6]	C	A	1.163e^-5	0.089	INTERGENIC
2L	8889402	2L_8889402_SNP [dm3] 2L_8889402_SNP [dm6]	C	T	1.178e^-5	0.09	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	5141969	2L_5141969_SNP [dm3] 2L_5141969_SNP [dm6]	C	T	1.191e^-5	0.09	INTRON Msp300
2L	5141955	2L_5141955_SNP [dm3] 2L_5141955_SNP [dm6]	C	G	1.200e^-5	0.09	INTRON Msp300
2R	19138664	2R_19138664_SNP [dm3] 2R_23251141_SNP [dm6]	A	G	1.201e^-5	0.09	INTERGENIC
3L	18447243	3L_18447243_SNP [dm3] 3L_18454143_SNP [dm6]	T	A	1.202e^-5	0.09	INTERGENIC
2L	12845317	2L_12845317_SNP [dm3] 2L_12845317_SNP [dm6]	T	C	1.205e^-5	0.09	INTERGENIC
2L	5141625	2L_5141625_SNP [dm3] 2L_5141625_SNP [dm6]	A	C	1.208e^-5	0.09	INTRON Msp300
3L	1719544	3L_1719544_SNP [dm3] 3L_1719544_SNP [dm6]	C	A	1.227e^-5	0.091	SYNONYMOUS_CODING drpr INTRON drpr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11373762	2L_11373762_SNP [dm3] 2L_11373762_SNP [dm6]	A	C	1.229e^-5	0.091	DOWNSTREAM salr INTERGENIC
X	9415210	X_9415210_SNP [dm3] X_9521177_SNP [dm6]	G	A	1.230e^-5	0.091	INTRON CG32700
3R	16104879	3R_16104879_SNP [dm3] 3R_20279157_SNP [dm6]	A	G	1.241e^-5	0.091	INTRON cic
X	11328667	X_11328667_SNP [dm3] X_11434634_SNP [dm6]	A	T	1.242e^-5	0.091	UTR_3_PRIME Evi5 DOWNSTREAM Evi5 INTRON Evi5
2L	18677221	2L_18677221_SNP [dm3] 2L_18677221_SNP [dm6]	G	A	1.246e^-5	0.091	UTR_5_PRIME CG31751 UPSTREAM Mst36Fa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18677264	2L_18677264_DEL [dm3] 2L_18677264_DEL [dm6]	TC	T	1.250e^-5	0.091	UTR_5_PRIME CG31751 UPSTREAM Mst36Fa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19138587	2R_19138587_SNP [dm3] 2R_23251064_SNP [dm6]	C	A	1.253e^-5	0.091	INTERGENIC
2L	5125427	2L_5125427_SNP [dm3] 2L_5125427_SNP [dm6]	G	A	1.256e^-5	0.091	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6565042	3R_6565042_SNP [dm3] 3R_10739320_SNP [dm6]	T	C	1.273e^-5	0.091	INTRON TkR86C	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	4488512	2L_4488512_SNP [dm3] 2L_4488512_SNP [dm6]	A	G	1.274e^-5	0.091	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	1.292e^-5	0.092	NON_SYNONYMOUS_CODING CG42713
X	10078207	X_10078207_SNP [dm3] X_10184174_SNP [dm6]	G	A	1.302e^-5	0.092	INTRON CG43902 & 1 other
X	9410128	X_9410128_SNP [dm3] X_9516095_SNP [dm6]	T	C	1.305e^-5	0.092	INTRON CG32700
X	5364846	X_5364846_SNP [dm3] X_5470813_SNP [dm6]	T	C	1.308e^-5	0.092	INTRON SPR
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	1.308e^-5	0.092	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25882076	3R_25882076_SNP [dm3] 3R_30056354_SNP [dm6]	G	T	1.312e^-5	0.092	NON_SYNONYMOUS_CODING CG15526 UPSTREAM CG7950 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	17166880	X_17166880_SNP [dm3] X_17272847_SNP [dm6]	T	A	1.314e^-5	0.092	INTRON f	TF binding site mE1_TFBS_cad
X	2664657	X_2664657_SNP [dm3] X_2770624_SNP [dm6]	G	C	1.349e^-5	0.093	INTRON kirre
2L	10833214	2L_10833214_SNP [dm3] 2L_10833214_SNP [dm6]	T	C	1.350e^-5	0.093	INTRON Nos
X	9410125	X_9410125_SNP [dm3] X_9516092_SNP [dm6]	C	T	1.356e^-5	0.093	INTRON CG32700
2L	14454017	2L_14454017_SNP [dm3] 2L_14454017_SNP [dm6]	G	T	1.359e^-5	0.093	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8884163	2L_8884163_SNP [dm3] 2L_8884163_SNP [dm6]	T	C	1.363e^-5	0.093	INTERGENIC
3L	18857191	3L_18857191_DEL [dm3] 3L_18864091_DEL [dm6]	TC	T	1.364e^-5	0.093	UPSTREAM CG6865 INTRON CG6865
2L	4832693	2L_4832693_DEL [dm3] 2L_4832693_DEL [dm6]	GATC	G	1.369e^-5	0.093	INTRON Ir25a	TF binding site mE1_TFBS_cad
2R	7840169	2R_7840169_SNP [dm3] 2R_11952664_SNP [dm6]	T	A	1.383e^-5	0.093	INTRON CG13188
X	18661147	X_18661147_SNP [dm3] X_18767114_SNP [dm6]	C	T	1.385e^-5	0.093	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	15276729	2L_15276729_SNP [dm3] 2L_15276729_SNP [dm6]	A	G	1.397e^-5	0.094	INTERGENIC
3L	8608451	3L_8608451_SNP [dm3] 3L_8615351_SNP [dm6]	A	G	1.405e^-5	0.094	SYNONYMOUS_CODING CG6282
3R	14603829	3R_14603829_SNP [dm3] 3R_18778107_SNP [dm6]	G	A	1.405e^-5	0.094	INTRON CG7720
2L	5148651	2L_5148651_SNP [dm3] 2L_5148651_SNP [dm6]	T	C	1.431e^-5	0.094	INTRON Msp300
2L	16815637	2L_16815637_SNP [dm3] 2L_16815637_SNP [dm6]	G	C	1.442e^-5	0.094	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
3R	13553104	3R_13553104_SNP [dm3] 3R_17727382_SNP [dm6]	A	G	1.447e^-5	0.094	INTRON Lgr1
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	1.451e^-5	0.094	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	1.451e^-5	0.094	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	1.451e^-5	0.094	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	15319359	2L_15319359_SNP [dm3] 2L_15319359_SNP [dm6]	A	T	1.457e^-5	0.094	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3815712	2R_3815712_SNP [dm3] 2R_7928207_SNP [dm6]	G	T	1.461e^-5	0.094	SYNONYMOUS_CODING CG8791	TF binding site mE1_TFBS_cad
3L	21091030	3L_21091030_SNP [dm3] 3L_21097930_SNP [dm6]	G	A	1.468e^-5	0.094	INTRON ko
2L	3937233	2L_3937233_SNP [dm3] 2L_3937233_SNP [dm6]	A	G	1.469e^-5	0.094	INTRON fred
2L	5147350	2L_5147350_SNP [dm3] 2L_5147350_SNP [dm6]	T	G	1.469e^-5	0.094	INTRON Msp300
3L	18437309	3L_18437309_SNP [dm3] 3L_18444209_SNP [dm6]	A	T	1.473e^-5	0.094	INTERGENIC
2L	2686790	2L_2686790_SNP [dm3] 2L_2686790_SNP [dm6]	T	A	1.475e^-5	0.094	INTRON CG31690
3R	5940822	3R_5940822_SNP [dm3] 3R_10115100_SNP [dm6]	A	G	1.476e^-5	0.094	INTRON CG3940
X	13092885	X_13092885_SNP [dm3] X_13198852_SNP [dm6]	G	A	1.476e^-5	0.094	SYNONYMOUS_CODING sno
2L	17870833	2L_17870833_SNP [dm3] 2L_17870833_SNP [dm6]	C	A	1.492e^-5	0.094	INTRON CadN2
3L	21091060	3L_21091060_SNP [dm3] 3L_21097960_SNP [dm6]	T	A	1.495e^-5	0.094	INTRON ko
2L	5141636	2L_5141636_SNP [dm3] 2L_5141636_SNP [dm6]	G	T	1.496e^-5	0.094	INTRON Msp300
2L	5074858	2L_5074858_DEL [dm3] 2L_5074858_DEL [dm6]	AA	A	1.496e^-5	0.094	INTRON pgant5
X	20481437	X_20481437_SNP [dm3] X_20610410_SNP [dm6]	G	A	1.521e^-5	0.094	INTRON RunxA
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	1.526e^-5	0.094	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	18450990	3L_18450990_SNP [dm3] 3L_18457890_SNP [dm6]	C	A	1.528e^-5	0.094	UPSTREAM CR44671 INTERGENIC
2R	4492159	2R_4492159_SNP [dm3] 2R_8604654_SNP [dm6]	G	A	1.529e^-5	0.094	INTRON rgr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18444440	3L_18444440_SNP [dm3] 3L_18451340_SNP [dm6]	T	A	1.534e^-5	0.094	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	15291851	2L_15291851_SNP [dm3] 2L_15291851_SNP [dm6]	T	C	1.542e^-5	0.094	NON_SYNONYMOUS_CODING CG15260 UPSTREAM ms_2_35Ci	TF binding site mE1_TFBS_HSA
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	1.544e^-5	0.094	UPSTREAM CG6018 INTRON px
3L	842464	3L_842464_SNP [dm3] 3L_842464_SNP [dm6]	C	G	1.546e^-5	0.094	NON_SYNONYMOUS_CODING Gr61a SYNONYMOUS_CODING Gr61a
3R	5363515	3R_5363515_SNP [dm3] 3R_9537793_SNP [dm6]	T	G	1.553e^-5	0.094	UTR_3_PRIME mura DOWNSTREAM mura
3R	857561	3R_857561_SNP [dm3] 3R_5031839_SNP [dm6]	A	C	1.556e^-5	0.094	INTERGENIC
3L	22969863	3L_22969863_SNP [dm3] 3L_22976763_SNP [dm6]	G	C	1.559e^-5	0.094	INTERGENIC	transposable element FlyBase
2L	5189277	2L_5189277_SNP [dm3] 2L_5189277_SNP [dm6]	A	T	1.581e^-5	0.095	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
3R	23992187	3R_23992187_SNP [dm3] 3R_28166465_SNP [dm6]	A	G	1.590e^-5	0.095	INTRON CG34354
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	1.603e^-5	0.096	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2L	12523617	2L_12523617_SNP [dm3] 2L_12523617_SNP [dm6]	C	T	1.615e^-5	0.096	INTRON bun
2L	1103005	2L_1103005_SNP [dm3] 2L_1103005_SNP [dm6]	A	C	1.629e^-5	0.097	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
X	19310309	X_19310309_SNP [dm3] X_19416276_SNP [dm6]	T	A	1.637e^-5	0.097	INTRON kek5
2L	17872903	2L_17872903_SNP [dm3] 2L_17872903_SNP [dm6]	C	T	1.653e^-5	0.098	INTRON CadN2
3L	2481681	3L_2481681_SNP [dm3] 3L_2481681_SNP [dm6]	A	T	1.708e^-5	0.1	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	10211407	X_10211407_SNP [dm3] X_10317374_SNP [dm6]	C	T	1.715e^-5	0.1	INTRON alpha-Man-I
3L	12651173	3L_12651173_SNP [dm3] 3L_12658073_SNP [dm6]	G	A	1.720e^-5	0.1	UPSTREAM CR44553 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	20872595	X_20872595_SNP [dm3] X_21001568_SNP [dm6]	C	A	1.731e^-5	0.101	INTERGENIC
3L	18862554	3L_18862554_SNP [dm3] 3L_18869454_SNP [dm6]	C	T	1.748e^-5	0.102	UTR_5_PRIME CG6852 UPSTREAM Blos3 DOWNSTREAM Dysb & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	4826801	2L_4826801_SNP [dm3] 2L_4826801_SNP [dm6]	G	A	1.758e^-5	0.102	SYNONYMOUS_CODING CG15628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16415858	X_16415858_SNP [dm3] X_16521825_SNP [dm6]	G	C	1.802e^-5	0.104	INTRON para
X	17397279	X_17397279_SNP [dm3] X_17503246_SNP [dm6]	T	C	1.806e^-5	0.104	INTRON CG43658	TF binding site BDTNP1_TFBS_twi
3L	18448013	3L_18448013_SNP [dm3] 3L_18454913_SNP [dm6]	G	A	1.830e^-5	0.105	INTERGENIC
3R	13723550	3R_13723550_INS [dm3] 3R_17897828_INS [dm6]	G	GGA	1.835e^-5	0.105	INTRON Rim
2L	9890286	2L_9890286_SNP [dm3] 2L_9890286_SNP [dm6]	T	C	1.837e^-5	0.105	SYNONYMOUS_CODING CG34183 UPSTREAM CG4537 DOWNSTREAM FKBP59 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1655732	2L_1655732_SNP [dm3] 2L_1655732_SNP [dm6]	C	A	1.845e^-5	0.105	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	18871272	3L_18871272_SNP [dm3] 3L_18878172_SNP [dm6]	G	T	1.857e^-5	0.105	UTR_3_PRIME Ugt DOWNSTREAM CG3961
X	6433954	X_6433954_SNP [dm3] X_6539921_SNP [dm6]	C	A	1.861e^-5	0.105	UPSTREAM CG34417 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5193273	2L_5193273_SNP [dm3] 2L_5193273_SNP [dm6]	A	C	1.864e^-5	0.105	SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16436438	X_16436438_SNP [dm3] X_16542405_SNP [dm6]	C	T	1.865e^-5	0.105	UTR_3_PRIME CG9902
3L	18488380	3L_18488380_SNP [dm3] 3L_18495280_SNP [dm6]	A	G	1.887e^-5	0.105	INTRON AstC-R2
X	16415876	X_16415876_SNP [dm3] X_16521843_SNP [dm6]	C	T	1.889e^-5	0.105	INTRON para
2R	17156353	2R_17156353_INS [dm3] 2R_21268848_INS [dm6]	T	TT	1.891e^-5	0.105	INTRON Rgk3
3L	18858509	3L_18858509_SNP [dm3] 3L_18865409_SNP [dm6]	C	G	1.907e^-5	0.105	NON_SYNONYMOUS_CODING CG6865 UPSTREAM CG14074	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	1270986	3R_1270986_SNP [dm3] 3R_5445264_SNP [dm6]	G	A	1.907e^-5	0.105	INTRON CG14669
3R	1805665	3R_1805665_SNP [dm3] 3R_5979943_SNP [dm6]	G	A	1.912e^-5	0.105	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	3142279	3L_3142279_SNP [dm3] 3L_3142279_SNP [dm6]	T	C	1.920e^-5	0.105	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1102995	2L_1102995_SNP [dm3] 2L_1102995_SNP [dm6]	G	A	1.937e^-5	0.105	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
3R	15194508	3R_15194508_SNP [dm3] 3R_19368786_SNP [dm6]	T	A	1.943e^-5	0.105	DOWNSTREAM Ino80 INTERGENIC
2R	15859369	2R_15859369_SNP [dm3] 2R_19971864_SNP [dm6]	A	T	1.948e^-5	0.105	INTERGENIC
2R	18438479	2R_18438479_SNP [dm3] 2R_22550974_SNP [dm6]	C	T	1.950e^-5	0.105	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8841804	3L_8841804_SNP [dm3] 3L_8848704_SNP [dm6]	G	A	1.950e^-5	0.105	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17869172	2L_17869172_SNP [dm3] 2L_17869172_SNP [dm6]	T	C	1.951e^-5	0.105	INTRON CadN2
2L	5137113	2L_5137113_SNP [dm3] 2L_5137113_SNP [dm6]	T	C	1.959e^-5	0.105	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	2208684	3R_2208684_SNP [dm3] 3R_6382962_SNP [dm6]	G	A	1.960e^-5	0.105	START_GAINED godzilla UTR_5_PRIME godzilla DOWNSTREAM TfIIFalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	1618846	2L_1618846_DEL [dm3] 2L_1618846_DEL [dm6]	CC	C	1.962e^-5	0.105	DOWNSTREAM CR44603 EXON CR44603	TF binding site mE1_TFBS_chinmo
2L	18672306	2L_18672306_SNP [dm3] 2L_18672306_SNP [dm6]	A	T	1.962e^-5	0.105	INTRON CG43339
2L	672946	2L_672946_SNP [dm3] 2L_672946_SNP [dm6]	C	T	1.986e^-5	0.106	INTRON ds
3L	2693503	3L_2693503_SNP [dm3] 3L_2693503_SNP [dm6]	C	T	1.989e^-5	0.106	INTRON Fife
3R	24108202	3R_24108202_SNP [dm3] 3R_28282480_SNP [dm6]	G	T	2.004e^-5	0.106	UPSTREAM CG34436 INTERGENIC
2L	5796410	2L_5796410_SNP [dm3] 2L_5796410_SNP [dm6]	G	A	2.036e^-5	0.107	INTRON CG9171
X	20959606	X_20959606_SNP [dm3] X_21088579_SNP [dm6]	C	T	2.050e^-5	0.107	INTERGENIC
3R	513407	3R_513407_SNP [dm3] 3R_4687685_SNP [dm6]	T	C	2.055e^-5	0.107	INTRON CG43427
3L	9644676	3L_9644676_SNP [dm3] 3L_9651576_SNP [dm6]	C	T	2.057e^-5	0.107	INTRON fry & 1 other
2R	7839091	2R_7839091_SNP [dm3] 2R_11951586_SNP [dm6]	A	G	2.057e^-5	0.107	INTRON CG13188
3L	12864523	3L_12864523_SNP [dm3] 3L_12871423_SNP [dm6]	C	T	2.074e^-5	0.108	INTERGENIC
2L	11036343	2L_11036343_INS [dm3] 2L_11036343_INS [dm6]	A	AAAAGGATCTTTTAATTTG...	2.084e^-5	0.108	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	10090728	3L_10090728_SNP [dm3] 3L_10097628_SNP [dm6]	C	A	2.102e^-5	0.108	INTRON dpr6 & 1 other
2L	11024937	2L_11024937_SNP [dm3] 2L_11024937_SNP [dm6]	T	C	2.111e^-5	0.108	INTRON Samuel
3L	13248094	3L_13248094_SNP [dm3] 3L_13254994_SNP [dm6]	T	A	2.116e^-5	0.108	INTRON caps
3L	18447280	3L_18447280_SNP [dm3] 3L_18454180_SNP [dm6]	T	C	2.120e^-5	0.108	INTERGENIC
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	2.124e^-5	0.108	INTERGENIC
2L	1103016	2L_1103016_SNP [dm3] 2L_1103016_SNP [dm6]	G	A	2.125e^-5	0.108	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
2L	15319482	2L_15319482_SNP [dm3] 2L_15319482_SNP [dm6]	T	A	2.128e^-5	0.108	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15315494	2L_15315494_SNP [dm3] 2L_15315494_SNP [dm6]	T	G	2.133e^-5	0.108	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14214481	2L_14214481_DEL [dm3] 2L_14214481_DEL [dm6]	AAGC	A	2.135e^-5	0.108	INTRON Dyrk2
3L	15283891	3L_15283891_SNP [dm3] 3L_15290791_SNP [dm6]	C	A	2.139e^-5	0.108	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12824513	2L_12824513_SNP [dm3] 2L_12824513_SNP [dm6]	C	A	2.144e^-5	0.108	INTERGENIC
X	14760035	X_14760035_SNP [dm3] X_14866002_SNP [dm6]	A	G	2.171e^-5	0.109	UTR_5_PRIME CG9518 INTRON Flo2
X	20023978	X_20023978_SNP [dm3] X_20129945_SNP [dm6]	G	T	2.172e^-5	0.109	DOWNSTREAM CG42582 INTERGENIC	TF binding site mE1_TFBS_inv
X	10958565	X_10958565_SNP [dm3] X_11064532_SNP [dm6]	A	C	2.177e^-5	0.109	INTERGENIC
2L	17873574	2L_17873574_SNP [dm3] 2L_17873574_SNP [dm6]	C	G	2.194e^-5	0.109	INTRON CadN2
X	20550773	X_20550773_SNP [dm3] X_20679746_SNP [dm6]	A	T	2.198e^-5	0.109	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	12824096	2L_12824096_SNP [dm3] 2L_12824096_SNP [dm6]	A	G	2.213e^-5	0.11	INTERGENIC
3L	10091559	3L_10091559_SNP [dm3] 3L_10098459_SNP [dm6]	T	A	2.232e^-5	0.11	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
X	11815639	X_11815639_SNP [dm3] X_11921606_SNP [dm6]	T	A	2.232e^-5	0.11	DOWNSTREAM Sclp INTRON Sclp
2L	5542887	2L_5542887_SNP [dm3] 2L_5542887_SNP [dm6]	C	G	2.247e^-5	0.111	UTR_5_PRIME Lam UPSTREAM Hel25E & 1 other INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18648958	3L_18648958_SNP [dm3] 3L_18655858_SNP [dm6]	T	C	2.256e^-5	0.111	INTRON MYPT-75D
3L	4486120	3L_4486120_SNP [dm3] 3L_4486120_SNP [dm6]	C	G	2.274e^-5	0.111	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17403881	3L_17403881_DEL [dm3] 3L_17410781_DEL [dm6]	GAG	G	2.276e^-5	0.111	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2R	16293310	2R_16293310_SNP [dm3] 2R_20405805_SNP [dm6]	C	T	2.280e^-5	0.111	INTERGENIC
3R	23992220	3R_23992220_SNP [dm3] 3R_28166498_SNP [dm6]	A	G	2.284e^-5	0.111	INTRON CG34354
3L	4231528	3L_4231528_SNP [dm3] 3L_4231528_SNP [dm6]	A	T	2.288e^-5	0.111	INTRON ImpL2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15283946	3L_15283946_SNP [dm3] 3L_15290846_SNP [dm6]	C	A	2.290e^-5	0.111	INTERGENIC	TF binding site mE1_TFBS_inv
X	12611563	X_12611563_SNP [dm3] X_12717530_SNP [dm6]	T	C	2.302e^-5	0.111	DOWNSTREAM CR43963 INTRON Smr	TF binding site BDTNP1_TFBS_dl
X	16489825	X_16489825_SNP [dm3] X_16595792_SNP [dm6]	C	T	2.333e^-5	0.112	UTR_3_PRIME crl & 1 other DOWNSTREAM crl & 1 other
X	19764020	X_19764020_SNP [dm3] X_19869987_SNP [dm6]	A	G	2.334e^-5	0.112	SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3584848	3L_3584848_SNP [dm3] 3L_3584848_SNP [dm6]	T	A	2.336e^-5	0.112	INTRON Eip63E
2L	11490584	2L_11490584_SNP [dm3] 2L_11490584_SNP [dm6]	C	A	2.343e^-5	0.112	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14344934	3R_14344934_SNP [dm3] 3R_18519212_SNP [dm6]	G	T	2.358e^-5	0.112	INTRON fru
2L	419616	2L_419616_SNP [dm3] 2L_419616_SNP [dm6]	T	A	2.361e^-5	0.112	UTR_5_PRIME CG13690 UPSTREAM RpLP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	13019266	X_13019266_SNP [dm3] X_13125233_SNP [dm6]	T	C	2.371e^-5	0.112	INTRON CG32638
X	16416047	X_16416047_SNP [dm3] X_16522014_SNP [dm6]	G	A	2.386e^-5	0.113	DOWNSTREAM Cnx14D INTRON para
2L	3822675	2L_3822675_SNP [dm3] 2L_3822675_SNP [dm6]	A	C	2.443e^-5	0.115	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	5148532	2L_5148532_SNP [dm3] 2L_5148532_SNP [dm6]	C	A	2.447e^-5	0.115	INTRON Msp300
3R	15298482	3R_15298482_SNP [dm3] 3R_19472760_SNP [dm6]	C	A	2.458e^-5	0.115	INTRON Dys	TF binding site mE1_TFBS_cad
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.460e^-5	0.115	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3937120	2L_3937120_SNP [dm3] 2L_3937120_SNP [dm6]	G	T	2.483e^-5	0.115	INTRON fred
2L	3718624	2L_3718624_SNP [dm3] 2L_3718624_SNP [dm6]	C	T	2.487e^-5	0.115	UPSTREAM lectin-24A INTRON Shaw
2L	20695730	2L_20695730_SNP [dm3] 2L_20695730_SNP [dm6]	T	G	2.507e^-5	0.115	INTRON Hr38
2L	18249785	2L_18249785_SNP [dm3] 2L_18249785_SNP [dm6]	C	A	2.524e^-5	0.115	INTRON CG42750
2L	16831187	2L_16831187_SNP [dm3] 2L_16831187_SNP [dm6]	T	C	2.529e^-5	0.115	NON_SYNONYMOUS_CODING CG31739 DOWNSTREAM CG13282	TF binding site mE1_TFBS_cad
2L	18673259	2L_18673259_SNP [dm3] 2L_18673259_SNP [dm6]	T	C	2.543e^-5	0.115	UTR_5_PRIME CG43339 DOWNSTREAM Mst36Fb
2L	11066160	2L_11066160_SNP [dm3] 2L_11066160_SNP [dm6]	T	C	2.543e^-5	0.115	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16436448	X_16436448_SNP [dm3] X_16542415_SNP [dm6]	T	C	2.553e^-5	0.115	UTR_3_PRIME CG9902
X	13984015	X_13984015_SNP [dm3] X_14089982_SNP [dm6]	C	A	2.554e^-5	0.115	INTERGENIC
X	1870969	X_1870969_SNP [dm3] X_1976936_SNP [dm6]	A	T	2.557e^-5	0.115	INTRON Hr4	TF binding site BDTNP1_TFBS_dl
2L	9208245	2L_9208245_SNP [dm3] 2L_9208245_SNP [dm6]	C	T	2.565e^-5	0.115	INTRON tai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6508376	2L_6508376_SNP [dm3] 2L_6508376_SNP [dm6]	C	T	2.574e^-5	0.115	INTRON CG31637 EXON CR44775	TF binding site BDTNP1_TFBS_hb
2L	18677596	2L_18677596_SNP [dm3] 2L_18677596_SNP [dm6]	A	C	2.583e^-5	0.115	UPSTREAM Mst36Fa INTRON CG31751	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	7517961	X_7517961_SNP [dm3] X_7623928_SNP [dm6]	G	A	2.585e^-5	0.115	INTRON ct
X	16436426	X_16436426_SNP [dm3] X_16542393_SNP [dm6]	C	T	2.589e^-5	0.115	UTR_3_PRIME CG9902
2L	13640604	2L_13640604_SNP [dm3] 2L_13640604_SNP [dm6]	T	C	2.591e^-5	0.115	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13640607	2L_13640607_SNP [dm3] 2L_13640607_SNP [dm6]	A	G	2.591e^-5	0.115	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13640608	2L_13640608_SNP [dm3] 2L_13640608_SNP [dm6]	T	A	2.591e^-5	0.115	INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8619729	3L_8619729_SNP [dm3] 3L_8626629_SNP [dm6]	A	C	2.600e^-5	0.115	INTRON Zasp66
2L	12178543	2L_12178543_SNP [dm3] 2L_12178543_SNP [dm6]	C	A	2.601e^-5	0.115	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
X	19744565	X_19744565_SNP [dm3] X_19850532_SNP [dm6]	G	A	2.604e^-5	0.115	UPSTREAM pico INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18443827	3L_18443827_SNP [dm3] 3L_18450727_SNP [dm6]	A	C	2.605e^-5	0.115	INTERGENIC
3L	2800791	3L_2800791_SNP [dm3] 3L_2800791_SNP [dm6]	C	T	2.622e^-5	0.116	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15258839	3R_15258839_SNP [dm3] 3R_19433117_SNP [dm6]	T	C	2.628e^-5	0.116	INTRON CG31221
3L	10125152	3L_10125152_SNP [dm3] 3L_10132052_SNP [dm6]	A	C	2.637e^-5	0.116	INTRON dpr6
3R	17852769	3R_17852769_SNP [dm3] 3R_22027047_SNP [dm6]	G	T	2.670e^-5	0.117	UTR_5_PRIME Cchl UPSTREAM ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13283954	X_13283954_SNP [dm3] X_13389921_SNP [dm6]	C	A	2.680e^-5	0.117	DOWNSTREAM CR44620 & 1 other INTERGENIC
3L	18451474	3L_18451474_SNP [dm3] 3L_18458374_SNP [dm6]	T	G	2.682e^-5	0.117	UPSTREAM CR44671 INTERGENIC
3R	23992508	3R_23992508_SNP [dm3] 3R_28166786_SNP [dm6]	C	T	2.690e^-5	0.117	INTRON CG34354
3R	4568243	3R_4568243_SNP [dm3] 3R_8742521_SNP [dm6]	C	A	2.708e^-5	0.118	INTRON CG9801
2L	5156295	2L_5156295_SNP [dm3] 2L_5156295_SNP [dm6]	G	T	2.715e^-5	0.118	INTRON Msp300
2L	14282364	2L_14282364_SNP [dm3] 2L_14282364_SNP [dm6]	A	G	2.734e^-5	0.118	INTRON wb
3L	18443693	3L_18443693_SNP [dm3] 3L_18450593_SNP [dm6]	T	A	2.754e^-5	0.119	INTERGENIC
X	22334672	X_22334672_SNP [dm3] X_22932836_SNP [dm6]	A	C	2.754e^-5	0.119	INTERGENIC
X	10841844	X_10841844_SNP [dm3] X_10947811_SNP [dm6]	C	A	2.768e^-5	0.119	NON_SYNONYMOUS_CODING Myo10A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12676555	3R_12676555_SNP [dm3] 3R_16850833_SNP [dm6]	C	G	2.770e^-5	0.119	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
X	16417652	X_16417652_SNP [dm3] X_16523619_SNP [dm6]	T	C	2.778e^-5	0.119	NON_SYNONYMOUS_CODING Cnx14D INTRON para
2L	14291215	2L_14291215_SNP [dm3] 2L_14291215_SNP [dm6]	T	G	2.816e^-5	0.12	INTRON wb EXON CR43639
X	3442112	X_3442112_SNP [dm3] X_3548079_SNP [dm6]	C	G	2.832e^-5	0.121	INTRON CG32791
2L	5155271	2L_5155271_SNP [dm3] 2L_5155271_SNP [dm6]	T	A	2.834e^-5	0.121	INTRON Msp300	TF binding site mE1_TFBS_cad
3R	2208674	3R_2208674_SNP [dm3] 3R_6382952_SNP [dm6]	C	G	2.857e^-5	0.121	UTR_5_PRIME godzilla DOWNSTREAM TfIIFalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	16416028	X_16416028_INS [dm3] X_16521995_INS [dm6]	T	TGGGTA	2.862e^-5	0.121	DOWNSTREAM Cnx14D INTRON para
X	3442090	X_3442090_SNP [dm3] X_3548057_SNP [dm6]	C	A	2.868e^-5	0.121	INTRON CG32791
2L	18673474	2L_18673474_SNP [dm3] 2L_18673474_SNP [dm6]	T	C	2.880e^-5	0.121	SYNONYMOUS_CODING Mst36Fb UPSTREAM CG43339
X	10635080	X_10635080_SNP [dm3] X_10741047_SNP [dm6]	C	T	2.886e^-5	0.121	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
2L	14552403	2L_14552403_SNP [dm3] 2L_14552403_SNP [dm6]	T	C	2.893e^-5	0.121	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	3933967	3L_3933967_SNP [dm3] 3L_3933967_SNP [dm6]	A	C	2.920e^-5	0.122	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3L	1980884	3L_1980884_SNP [dm3] 3L_1980884_SNP [dm6]	T	G	2.922e^-5	0.122	INTERGENIC
2L	5137122	2L_5137122_SNP [dm3] 2L_5137122_SNP [dm6]	G	A	2.939e^-5	0.122	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	15319383	2L_15319383_SNP [dm3] 2L_15319383_SNP [dm6]	T	C	2.942e^-5	0.122	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13166380	3R_13166380_INS [dm3] 3R_17340658_INS [dm6]	A	AAAAATACCGA...	2.946e^-5	0.122	INTRON beat-IIa
3L	10093750	3L_10093750_SNP [dm3] 3L_10100650_SNP [dm6]	C	A	2.957e^-5	0.122	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	15113030	3R_15113030_SNP [dm3] 3R_19287308_SNP [dm6]	G	C	2.958e^-5	0.122	INTERGENIC
2L	8912729	2L_8912729_SNP [dm3] 2L_8912729_SNP [dm6]	T	G	2.961e^-5	0.122	INTRON CG34398
2L	965737	2L_965737_SNP [dm3] 2L_965737_SNP [dm6]	A	G	2.978e^-5	0.122	INTERGENIC
2L	17873892	2L_17873892_SNP [dm3] 2L_17873892_SNP [dm6]	T	A	2.987e^-5	0.123	INTRON CadN2
3R	6382272	3R_6382272_SNP [dm3] 3R_10556550_SNP [dm6]	A	G	2.995e^-5	0.123	INTRON hth
2L	17872830	2L_17872830_SNP [dm3] 2L_17872830_SNP [dm6]	A	G	3.019e^-5	0.123	INTRON CadN2
3R	23538958	3R_23538958_SNP [dm3] 3R_27713236_SNP [dm6]	G	A	3.022e^-5	0.123	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	5603816	X_5603816_SNP [dm3] X_5709783_SNP [dm6]	G	A	3.028e^-5	0.123	SYNONYMOUS_CODING CG33080	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21601798	3L_21601798_SNP [dm3] 3L_21608698_SNP [dm6]	A	G	3.043e^-5	0.123	INTRON TfAP-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5138299	2L_5138299_SNP [dm3] 2L_5138299_SNP [dm6]	A	G	3.059e^-5	0.123	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5138310	2L_5138310_SNP [dm3] 2L_5138310_SNP [dm6]	G	A	3.059e^-5	0.123	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	3.075e^-5	0.123	UPSTREAM CG32687 INTERGENIC
3R	5866101	3R_5866101_SNP [dm3] 3R_10040379_SNP [dm6]	G	A	3.075e^-5	0.123	INTRON Mical
2L	16827077	2L_16827077_SNP [dm3] 2L_16827077_SNP [dm6]	G	A	3.076e^-5	0.123	UPSTREAM CG31739 DOWNSTREAM mdy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15027760	2L_15027760_SNP [dm3] 2L_15027760_SNP [dm6]	A	T	3.087e^-5	0.123	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	3.099e^-5	0.123	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12505002	3L_12505002_SNP [dm3] 3L_12511902_SNP [dm6]	C	T	3.099e^-5	0.123	INTRON sti
X	6640915	X_6640915_SNP [dm3] X_6746882_SNP [dm6]	G	A	3.100e^-5	0.123	UPSTREAM CG14439 DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5119277	2L_5119277_SNP [dm3] 2L_5119277_SNP [dm6]	C	T	3.108e^-5	0.123	INTRON Msp300
2L	5082595	2L_5082595_SNP [dm3] 2L_5082595_SNP [dm6]	T	C	3.116e^-5	0.123	INTRON pgant5
2L	801843	2L_801843_SNP [dm3] 2L_801843_SNP [dm6]	G	T	3.120e^-5	0.123	INTERGENIC
2R	17749567	2R_17749567_SNP [dm3] 2R_21862062_SNP [dm6]	T	C	3.148e^-5	0.124	DOWNSTREAM CG9294 INTERGENIC
3R	810769	3R_810769_SNP [dm3] 3R_4985047_SNP [dm6]	C	T	3.161e^-5	0.124	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	6099928	2L_6099928_SNP [dm3] 2L_6099928_SNP [dm6]	C	T	3.167e^-5	0.124	UPSTREAM CG9175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19138670	2R_19138670_SNP [dm3] 2R_23251147_SNP [dm6]	A	G	3.172e^-5	0.124	INTERGENIC
2L	4488581	2L_4488581_SNP [dm3] 2L_4488581_SNP [dm6]	A	C	3.215e^-5	0.126	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4160349	X_4160349_SNP [dm3] X_4266316_SNP [dm6]	C	T	3.220e^-5	0.126	SYNONYMOUS_CODING CG12691
2L	5144680	2L_5144680_SNP [dm3] 2L_5144680_SNP [dm6]	C	A	3.242e^-5	0.126	SYNONYMOUS_CODING Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20540311	3R_20540311_SNP [dm3] 3R_24714589_SNP [dm6]	C	A	3.260e^-5	0.126	UPSTREAM CG13627 INTRON CG13627
2L	419636	2L_419636_SNP [dm3] 2L_419636_SNP [dm6]	C	G	3.260e^-5	0.126	UTR_5_PRIME CG13690 UPSTREAM RpLP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10086613	3L_10086613_SNP [dm3] 3L_10093513_SNP [dm6]	C	A	3.263e^-5	0.126	NON_SYNONYMOUS_CODING CG32054 INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16551038	3L_16551038_SNP [dm3] 3L_16557938_SNP [dm6]	A	G	3.266e^-5	0.126	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
2L	17867835	2L_17867835_SNP [dm3] 2L_17867835_SNP [dm6]	A	T	3.276e^-5	0.126	INTRON CadN2
X	16416044	X_16416044_SNP [dm3] X_16522011_SNP [dm6]	A	T	3.289e^-5	0.127	DOWNSTREAM Cnx14D INTRON para
2R	7842276	2R_7842276_SNP [dm3] 2R_11954771_SNP [dm6]	C	G	3.292e^-5	0.127	INTRON CG13188
X	9185496	X_9185496_SNP [dm3] X_9291463_SNP [dm6]	T	G	3.334e^-5	0.127	INTRON lz
X	3466638	X_3466638_SNP [dm3] X_3572605_SNP [dm6]	G	C	3.340e^-5	0.127	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8	TF binding site BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	12175943	2L_12175943_SNP [dm3] 2L_12175943_SNP [dm6]	T	G	3.342e^-5	0.127	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
2L	17896477	2L_17896477_SNP [dm3] 2L_17896477_SNP [dm6]	A	C	3.348e^-5	0.127	INTERGENIC
3R	20667801	3R_20667801_SNP [dm3] 3R_24842079_SNP [dm6]	T	C	3.351e^-5	0.127	UTR_5_PRIME Esp UPSTREAM CG33658
2L	5138784	2L_5138784_SNP [dm3] 2L_5138784_SNP [dm6]	T	C	3.368e^-5	0.128	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	24108186	3R_24108186_SNP [dm3] 3R_28282464_SNP [dm6]	A	G	3.375e^-5	0.128	UPSTREAM CG34436 INTERGENIC
2L	18670874	2L_18670874_INS [dm3] 2L_18670874_INS [dm6]	C	CA	3.385e^-5	0.128	UPSTREAM CG43338 DOWNSTREAM CG43339 INTRON CG43338
3R	19529649	3R_19529649_SNP [dm3] 3R_23703927_SNP [dm6]	C	T	3.386e^-5	0.128	SYNONYMOUS_CODING CG31413 UPSTREAM CG31414
3R	6094882	3R_6094882_SNP [dm3] 3R_10269160_SNP [dm6]	C	T	3.423e^-5	0.128	INTRON CG43143
2L	6138101	2L_6138101_SNP [dm3] 2L_6138101_SNP [dm6]	C	T	3.424e^-5	0.128	DOWNSTREAM CR44824 INTERGENIC
3L	1530313	3L_1530313_SNP [dm3] 3L_1530313_SNP [dm6]	T	A	3.425e^-5	0.128	NON_SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12875559	3L_12875559_DEL [dm3] 3L_12882459_DEL [dm6]	CGCGAT	C	3.427e^-5	0.128	INTERGENIC
3L	16549674	3L_16549674_SNP [dm3] 3L_16556574_SNP [dm6]	C	G	3.428e^-5	0.128	UPSTREAM CG4229 INTERGENIC
3R	16104869	3R_16104869_SNP [dm3] 3R_20279147_SNP [dm6]	A	T	3.455e^-5	0.128	INTRON cic
3R	24134285	3R_24134285_SNP [dm3] 3R_28308563_SNP [dm6]	C	T	3.456e^-5	0.128	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18453296	3L_18453296_SNP [dm3] 3L_18460196_SNP [dm6]	A	C	3.463e^-5	0.128	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	16889164	3L_16889164_SNP [dm3] 3L_16896064_SNP [dm6]	T	C	3.464e^-5	0.128	INTRON Lmpt
2L	6115402	2L_6115402_SNP [dm3] 2L_6115402_SNP [dm6]	T	A	3.465e^-5	0.128	INTRON stai	TF binding site BDTNP1_TFBS_dl
3L	7976112	3L_7976112_SNP [dm3] 3L_7983012_SNP [dm6]	G	T	3.483e^-5	0.129	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	14282365	2L_14282365_SNP [dm3] 2L_14282365_SNP [dm6]	C	T	3.505e^-5	0.129	INTRON wb
2L	3436550	2L_3436550_SNP [dm3] 2L_3436550_SNP [dm6]	T	C	3.508e^-5	0.129	INTERGENIC
3R	6039042	3R_6039042_SNP [dm3] 3R_10213320_SNP [dm6]	C	T	3.510e^-5	0.129	UPSTREAM Timp INTRON Syn	TF binding site BDTNP1_TFBS_z
X	9979189	X_9979189_SNP [dm3] X_10085156_SNP [dm6]	T	G	3.522e^-5	0.129	UTR_3_PRIME CG2974 DOWNSTREAM CG2972
3L	9644648	3L_9644648_SNP [dm3] 3L_9651548_SNP [dm6]	A	G	3.535e^-5	0.129	INTRON fry & 1 other
3L	21569325	3L_21569325_DEL [dm3] 3L_21576225_DEL [dm6]	TTGAGTTTGTGTATTTCTCA...	T	3.545e^-5	0.129	DOWNSTREAM CG32441 EXON CR43939
3R	23115685	3R_23115685_DEL [dm3] 3R_27289963_DEL [dm6]	CT	C	3.556e^-5	0.129	INTRON Hmu	TF binding site mE1_TFBS_cad
3L	17538550	3L_17538550_SNP [dm3] 3L_17545450_SNP [dm6]	A	C	3.559e^-5	0.129	INTRON Nedd4	TF binding site mE1_TFBS_sens
3R	810662	3R_810662_DEL [dm3] 3R_4984940_DEL [dm6]	CGACGCCGACTGCATTTCAT...	C	3.575e^-5	0.129	UPSTREAM CG14662 EXON CR43424	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	2209177	3R_2209177_INS [dm3] 3R_6383455_INS [dm6]	G	GCGCATTATCGCTTGTCCTT...	3.580e^-5	0.129	UTR_5_PRIME godzilla UPSTREAM godzilla DOWNSTREAM TfIIFalpha INTRON godzilla	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3R	5875277	3R_5875277_SNP [dm3] 3R_10049555_SNP [dm6]	C	A	3.581e^-5	0.129	NON_SYNONYMOUS_CODING CG3925 UPSTREAM CG12811	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5138547	2L_5138547_SNP [dm3] 2L_5138547_SNP [dm6]	G	T	3.586e^-5	0.129	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	6037397	3R_6037397_SNP [dm3] 3R_10211675_SNP [dm6]	G	C	3.597e^-5	0.129	INTRON Syn & 1 other
3R	5874812	3R_5874812_SNP [dm3] 3R_10049090_SNP [dm6]	T	A	3.599e^-5	0.129	UPSTREAM CG3925 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	615874	2L_615874_SNP [dm3] 2L_615874_SNP [dm6]	T	C	3.601e^-5	0.129	INTERGENIC
2L	2669786	2L_2669786_SNP [dm3] 2L_2669786_SNP [dm6]	G	C	3.607e^-5	0.129	UPSTREAM Gr23a INTERGENIC
3L	21563209	3L_21563209_SNP [dm3] 3L_21570109_SNP [dm6]	G	A	3.621e^-5	0.129	SYNONYMOUS_CODING Smc5
2L	15319447	2L_15319447_SNP [dm3] 2L_15319447_SNP [dm6]	A	G	3.637e^-5	0.13	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10828090	X_10828090_SNP [dm3] X_10934057_SNP [dm6]	C	T	3.649e^-5	0.13	INTRON Myo10A
3L	21585769	3L_21585769_SNP [dm3] 3L_21592669_SNP [dm6]	G	A	3.664e^-5	0.13	INTRON TfAP-2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15507853	3L_15507853_SNP [dm3] 3L_15514753_SNP [dm6]	G	C	3.672e^-5	0.13	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	615879	2L_615879_SNP [dm3] 2L_615879_SNP [dm6]	G	T	3.691e^-5	0.131	INTERGENIC
3L	10091449	3L_10091449_SNP [dm3] 3L_10098349_SNP [dm6]	C	T	3.699e^-5	0.131	UPSTREAM CG42825 INTRON dpr6
3L	12060192	3L_12060192_SNP [dm3] 3L_12067092_SNP [dm6]	T	C	3.717e^-5	0.131	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk
X	16416049	X_16416049_SNP [dm3] X_16522016_SNP [dm6]	A	G	3.721e^-5	0.131	DOWNSTREAM Cnx14D INTRON para
3L	2481695	3L_2481695_SNP [dm3] 3L_2481695_SNP [dm6]	A	C	3.728e^-5	0.131	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	16815632	2L_16815632_SNP [dm3] 2L_16815632_SNP [dm6]	G	A	3.729e^-5	0.131	NON_SYNONYMOUS_CODING CG13272 INTRON CG13280	TF binding site mE1_TFBS_Kr mE1_TFBS_sens
X	5915176	X_5915176_SNP [dm3] X_6021143_SNP [dm6]	T	G	3.742e^-5	0.131	INTERGENIC
3L	7975739	3L_7975739_SNP [dm3] 3L_7982639_SNP [dm6]	T	A	3.746e^-5	0.131	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11591333	2L_11591333_SNP [dm3] 2L_11591333_SNP [dm6]	G	A	3.751e^-5	0.131	DOWNSTREAM Acp33A INTRON kek2
2L	12183890	2L_12183890_DEL [dm3] 2L_12183890_DEL [dm6]	AAAACCACTTATTTCATTTA...	A	3.755e^-5	0.131	INTRON aret
3R	23682129	3R_23682129_SNP [dm3] 3R_27856407_SNP [dm6]	T	G	3.774e^-5	0.131	INTRON CG34353	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
2L	8912547	2L_8912547_SNP [dm3] 2L_8912547_SNP [dm6]	G	A	3.809e^-5	0.132	INTRON CG34398
3L	12060278	3L_12060278_SNP [dm3] 3L_12067178_SNP [dm6]	A	T	3.833e^-5	0.133	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk
X	8816041	X_8816041_SNP [dm3] X_8922008_SNP [dm6]	T	A	3.851e^-5	0.133	DOWNSTREAM CG12661 INTRON rdgA
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	3.870e^-5	0.133	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10698332	2L_10698332_SNP [dm3] 2L_10698332_SNP [dm6]	C	A	3.883e^-5	0.133	UPSTREAM CG7300 DOWNSTREAM CR44181 INTERGENIC	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	5141627	2L_5141627_SNP [dm3] 2L_5141627_SNP [dm6]	T	A	3.901e^-5	0.133	INTRON Msp300
X	15880991	X_15880991_SNP [dm3] X_15986958_SNP [dm6]	G	A	3.909e^-5	0.133	UPSTREAM CG9172 DOWNSTREAM eIF5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6102794	2L_6102794_SNP [dm3] 2L_6102794_SNP [dm6]	T	C	3.923e^-5	0.133	INTRON stai
3L	12059901	3L_12059901_SNP [dm3] 3L_12066801_SNP [dm6]	T	A	3.925e^-5	0.133	DOWNSTREAM Sema-5c INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_ttk
3L	12060626	3L_12060626_SNP [dm3] 3L_12067526_SNP [dm6]	A	C	3.925e^-5	0.133	UTR_3_PRIME Sema-5c DOWNSTREAM Sema-5c	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12060657	3L_12060657_SNP [dm3] 3L_12067557_SNP [dm6]	T	G	3.925e^-5	0.133	UTR_3_PRIME Sema-5c DOWNSTREAM Sema-5c	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18790236	2R_18790236_SNP [dm3] 2R_22902713_SNP [dm6]	A	T	3.943e^-5	0.133	INTRON nahoda
2L	6124792	2L_6124792_SNP [dm3] 2L_6124792_SNP [dm6]	A	G	3.948e^-5	0.133	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
X	10385194	X_10385194_INS [dm3] X_10491161_INS [dm6]	T	TGGT	3.948e^-5	0.133	INTRON spri
2L	3436570	2L_3436570_MNP [dm3] 2L_3436570_MNP [dm6]	TTA	CAT	3.958e^-5	0.133	INTERGENIC
3L	3927541	3L_3927541_SNP [dm3] 3L_3927541_SNP [dm6]	T	A	3.959e^-5	0.133	INTRON Eip63F-1
3R	2222277	3R_2222277_SNP [dm3] 3R_6396555_SNP [dm6]	C	T	3.959e^-5	0.133	INTRON Dmtn
X	9596987	X_9596987_SNP [dm3] X_9702954_SNP [dm6]	C	G	3.974e^-5	0.133	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	3436563	2L_3436563_INS [dm3] 2L_3436563_INS [dm6]	A	ATATGC	3.975e^-5	0.133	INTERGENIC
2L	13908110	2L_13908110_SNP [dm3] 2L_13908110_SNP [dm6]	C	T	3.987e^-5	0.134	NON_SYNONYMOUS_CODING Ance	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2404649	2L_2404649_SNP [dm3] 2L_2404649_SNP [dm6]	A	G	4.007e^-5	0.134	INTRON VGlut
2L	18673531	2L_18673531_SNP [dm3] 2L_18673531_SNP [dm6]	A	T	4.019e^-5	0.134	NON_SYNONYMOUS_CODING Mst36Fb UPSTREAM CG43339
3R	2227478	3R_2227478_INS [dm3] 3R_6401756_INS [dm6]	A	ATC	4.028e^-5	0.134	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	2590625	3L_2590625_SNP [dm3] 3L_2590625_SNP [dm6]	A	C	4.047e^-5	0.135	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
3L	21408681	3L_21408681_DEL [dm3] 3L_21415581_DEL [dm6]	ATCGCTCGTGAGTGAAGGGT...	A	4.084e^-5	0.135	INTRON rgn
3L	22943063	3L_22943063_SNP [dm3] 3L_22949963_SNP [dm6]	C	A	4.087e^-5	0.135	INTRON Mes2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5502112	X_5502112_SNP [dm3] X_5608079_SNP [dm6]	G	A	4.087e^-5	0.135	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14361722	3R_14361722_SNP [dm3] 3R_18536000_SNP [dm6]	T	G	4.088e^-5	0.135	INTRON fru
3L	21569359	3L_21569359_SNP [dm3] 3L_21576259_SNP [dm6]	C	T	4.101e^-5	0.135	DOWNSTREAM CG32441 EXON CR43939
2L	13928673	2L_13928673_SNP [dm3] 2L_13928673_SNP [dm6]	T	A	4.108e^-5	0.135	INTRON Ance-3
3L	18478419	3L_18478419_SNP [dm3] 3L_18485319_SNP [dm6]	C	T	4.114e^-5	0.135	UTR_3_PRIME AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	9645910	3L_9645910_SNP [dm3] 3L_9652810_SNP [dm6]	T	A	4.120e^-5	0.135	INTRON fry & 1 other
2L	11036304	2L_11036304_DEL [dm3] 2L_11036304_DEL [dm6]	GAAAAGTTACATG...	G	4.136e^-5	0.135	DOWNSTREAM CG18666 INTRON Samuel	TF binding site mE1_TFBS_cad
3L	4007122	3L_4007122_SNP [dm3] 3L_4007122_SNP [dm6]	A	C	4.149e^-5	0.135	DOWNSTREAM CG14985 INTERGENIC
2L	3436602	2L_3436602_INS [dm3] 2L_3436602_INS [dm6]	A	AGTTTAT	4.153e^-5	0.135	INTERGENIC
2L	3436607	2L_3436607_DEL [dm3] 2L_3436607_DEL [dm6]	AA	T	4.153e^-5	0.135	INTERGENIC
3R	13166381	3R_13166381_DEL [dm3] 3R_17340659_DEL [dm6]	CTGTCGGT	C	4.166e^-5	0.135	INTRON beat-IIa
3L	1408011	3L_1408011_SNP [dm3] 3L_1408011_SNP [dm6]	G	A	4.173e^-5	0.135	INTRON Ptp61F
3R	6052111	3R_6052111_SNP [dm3] 3R_10226389_SNP [dm6]	G	T	4.175e^-5	0.135	UPSTREAM CG42795 DOWNSTREAM CG34107 INTRON CG42795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10448549	X_10448549_SNP [dm3] X_10554516_SNP [dm6]	T	C	4.186e^-5	0.135	INTRON spri
2L	12840644	2L_12840644_SNP [dm3] 2L_12840644_SNP [dm6]	A	C	4.187e^-5	0.135	UPSTREAM CR44970 & 1 other INTERGENIC
3L	14581782	3L_14581782_SNP [dm3] 3L_14588682_SNP [dm6]	G	T	4.197e^-5	0.135	INTRON HGTX
2R	4758574	2R_4758574_SNP [dm3] 2R_8871069_SNP [dm6]	T	A	4.215e^-5	0.136	INTRON RyR
3L	22912986	3L_22912986_SNP [dm3] 3L_22919886_SNP [dm6]	T	G	4.234e^-5	0.136	INTRON CG12768
3R	6036260	3R_6036260_SNP [dm3] 3R_10210538_SNP [dm6]	G	A	4.243e^-5	0.136	INTRON Syn & 1 other
3R	12676674	3R_12676674_SNP [dm3] 3R_16850952_SNP [dm6]	A	G	4.279e^-5	0.137	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	10344841	X_10344841_SNP [dm3] X_10450808_SNP [dm6]	A	T	4.282e^-5	0.137	INTRON CG32683
3L	18453603	3L_18453603_SNP [dm3] 3L_18460503_SNP [dm6]	A	T	4.296e^-5	0.137	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12107452	X_12107452_SNP [dm3] X_12213419_SNP [dm6]	A	T	4.307e^-5	0.137	INTRON Ten-a
3L	22166830	3L_22166830_SNP [dm3] 3L_22173730_SNP [dm6]	A	G	4.309e^-5	0.137	INTRON olf413	TF binding site mE1_TFBS_inv
2L	8912787	2L_8912787_SNP [dm3] 2L_8912787_SNP [dm6]	T	A	4.314e^-5	0.137	INTRON CG34398
2R	1357848	2R_1357848_SNP [dm3] 2R_5470343_SNP [dm6]	G	T	4.320e^-5	0.137	INTRON CG30440	transposable element FlyBase
3R	14728278	3R_14728278_SNP [dm3] 3R_18902556_SNP [dm6]	G	C	4.337e^-5	0.137	SYNONYMOUS_CODING CG34284 UPSTREAM CG14294
3L	16030492	3L_16030492_SNP [dm3] 3L_16037392_SNP [dm6]	T	A	4.350e^-5	0.137	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2L	5139329	2L_5139329_SNP [dm3] 2L_5139329_SNP [dm6]	T	C	4.352e^-5	0.137	INTRON Msp300
2R	7839090	2R_7839090_SNP [dm3] 2R_11951585_SNP [dm6]	C	T	4.352e^-5	0.137	INTRON CG13188
2L	14068088	2L_14068088_DEL [dm3] 2L_14068088_DEL [dm6]	AA	G	4.361e^-5	0.137	INTRON nAChRalpha5
2L	9780833	2L_9780833_SNP [dm3] 2L_9780833_SNP [dm6]	C	A	4.372e^-5	0.137	INTERGENIC
2L	11066197	2L_11066197_SNP [dm3] 2L_11066197_SNP [dm6]	A	T	4.386e^-5	0.137	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18391750	3L_18391750_DEL [dm3] 3L_18398650_DEL [dm6]	GG	G	4.421e^-5	0.138	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	12665586	2L_12665586_SNP [dm3] 2L_12665586_SNP [dm6]	G	T	4.422e^-5	0.138	INTRON pdm2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18449601	3L_18449601_SNP [dm3] 3L_18456501_SNP [dm6]	C	T	4.435e^-5	0.138	DOWNSTREAM CR44671 EXON CR44670
2L	11576279	2L_11576279_SNP [dm3] 2L_11576279_SNP [dm6]	G	C	4.442e^-5	0.138	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18654708	X_18654708_SNP [dm3] X_18760675_SNP [dm6]	C	T	4.450e^-5	0.138	INTERGENIC
3L	17472077	3L_17472077_SNP [dm3] 3L_17478977_SNP [dm6]	T	C	4.456e^-5	0.138	UPSTREAM qjt & 1 other INTERGENIC
3L	18448104	3L_18448104_SNP [dm3] 3L_18455004_SNP [dm6]	T	C	4.459e^-5	0.138	INTERGENIC
3R	6034946	3R_6034946_SNP [dm3] 3R_10209224_SNP [dm6]	C	T	4.471e^-5	0.138	INTRON Syn & 1 other
3R	1886665	3R_1886665_SNP [dm3] 3R_6060943_SNP [dm6]	G	A	4.476e^-5	0.138	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16550997	3L_16550997_SNP [dm3] 3L_16557897_SNP [dm6]	T	C	4.484e^-5	0.138	UTR_3_PRIME CG4229	TF binding site mE1_TFBS_cad
2L	5146137	2L_5146137_SNP [dm3] 2L_5146137_SNP [dm6]	T	C	4.490e^-5	0.138	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	615853	2L_615853_SNP [dm3] 2L_615853_SNP [dm6]	C	T	4.493e^-5	0.138	INTERGENIC
3R	15195747	3R_15195747_SNP [dm3] 3R_19370025_SNP [dm6]	G	A	4.497e^-5	0.138	INTRON Ino80
X	15158625	X_15158625_SNP [dm3] X_15264592_SNP [dm6]	C	T	4.503e^-5	0.138	INTERGENIC
3L	2481684	3L_2481684_SNP [dm3] 3L_2481684_SNP [dm6]	G	T	4.509e^-5	0.138	INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18480440	3L_18480440_INS [dm3] 3L_18487340_INS [dm6]	A	ACTTACGAAAGGAAAAAA...	4.543e^-5	0.138	INTRON AstC-R2
3R	2209232	3R_2209232_SNP [dm3] 3R_6383510_SNP [dm6]	G	C	4.548e^-5	0.138	START_GAINED godzilla UTR_5_PRIME godzilla UPSTREAM godzilla DOWNSTREAM TfIIFalpha INTRON godzilla	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2L	5446670	2L_5446670_SNP [dm3] 2L_5446670_SNP [dm6]	C	T	4.549e^-5	0.138	INTERGENIC
X	12445482	X_12445482_SNP [dm3] X_12551449_SNP [dm6]	G	A	4.553e^-5	0.138	INTRON CG43921
3R	5867959	3R_5867959_SNP [dm3] 3R_10042237_SNP [dm6]	C	T	4.566e^-5	0.138	INTRON Mical	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	16030689	3L_16030689_SNP [dm3] 3L_16037589_SNP [dm6]	A	C	4.580e^-5	0.139	DOWNSTREAM CG5895 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
3L	18482477	3L_18482477_SNP [dm3] 3L_18489377_SNP [dm6]	T	C	4.589e^-5	0.139	INTRON AstC-R2
X	9410115	X_9410115_DEL [dm3] X_9516082_DEL [dm6]	GT	G	4.607e^-5	0.139	INTRON CG32700
3L	2022623	3L_2022623_SNP [dm3] 3L_2022623_SNP [dm6]	G	A	4.614e^-5	0.139	SYNONYMOUS_CODING CG42356 UPSTREAM CG42357
2L	16830053	2L_16830053_SNP [dm3] 2L_16830053_SNP [dm6]	G	C	4.615e^-5	0.139	NON_SYNONYMOUS_CODING CG31739	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	4.624e^-5	0.139	DOWNSTREAM CR44415 INTERGENIC
3R	4962756	3R_4962756_SNP [dm3] 3R_9137034_SNP [dm6]	G	A	4.637e^-5	0.139	INTRON pum
2L	5541969	2L_5541969_SNP [dm3] 2L_5541969_SNP [dm6]	A	G	4.639e^-5	0.139	SPLICE_SITE_REGION Hel25E START_GAINED Hel25E UTR_5_PRIME Hel25E UPSTREAM Lam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	14214479	2L_14214479_SNP [dm3] 2L_14214479_SNP [dm6]	A	C	4.652e^-5	0.139	INTRON Dyrk2
3L	9949224	3L_9949224_SNP [dm3] 3L_9956124_SNP [dm6]	C	A	4.678e^-5	0.139	INTRON CG34356
3L	2181204	3L_2181204_SNP [dm3] 3L_2181204_SNP [dm6]	G	A	4.685e^-5	0.139	INTERGENIC
2R	18362111	2R_18362111_SNP [dm3] 2R_22474606_SNP [dm6]	G	A	4.703e^-5	0.14	SYNONYMOUS_CODING CG45062
2L	13345372	2L_13345372_SNP [dm3] 2L_13345372_SNP [dm6]	A	G	4.758e^-5	0.141	INTERGENIC
3R	23052964	3R_23052964_SNP [dm3] 3R_27227242_SNP [dm6]	A	G	4.773e^-5	0.141	DOWNSTREAM CG42813 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	11630524	X_11630524_SNP [dm3] X_11736491_SNP [dm6]	C	T	4.778e^-5	0.141	UTR_3_PRIME CG15221	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3896144	3L_3896144_SNP [dm3] 3L_3896144_SNP [dm6]	T	A	4.784e^-5	0.141	UPSTREAM CG14977 INTRON Gr63a	TF binding site mE1_TFBS_sens
X	19092905	X_19092905_MNP [dm3] X_19198872_MNP [dm6]	CCCT	TGGA	4.790e^-5	0.141	DOWNSTREAM CG7990 INTRON CG7990
3R	5876308	3R_5876308_SNP [dm3] 3R_10050586_SNP [dm6]	A	C	4.794e^-5	0.141	NON_SYNONYMOUS_CODING CG3925 DOWNSTREAM Fancl	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2L	17893888	2L_17893888_SNP [dm3] 2L_17893888_SNP [dm6]	A	C	4.799e^-5	0.141	EXON CR43420
3L	2799858	3L_2799858_SNP [dm3] 3L_2799858_SNP [dm6]	A	G	4.808e^-5	0.141	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
X	16416051	X_16416051_SNP [dm3] X_16522018_SNP [dm6]	G	A	4.826e^-5	0.141	DOWNSTREAM Cnx14D INTRON para
3R	2208974	3R_2208974_SNP [dm3] 3R_6383252_SNP [dm6]	C	A	4.827e^-5	0.141	UTR_5_PRIME godzilla DOWNSTREAM TfIIFalpha	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
X	10828124	X_10828124_SNP [dm3] X_10934091_SNP [dm6]	T	C	4.828e^-5	0.141	INTRON Myo10A
3L	18372279	3L_18372279_SNP [dm3] 3L_18379179_SNP [dm6]	G	A	4.829e^-5	0.141	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	5306663	3R_5306663_SNP [dm3] 3R_9480941_SNP [dm6]	A	T	4.846e^-5	0.141	INTRON CG16779	TF binding site BDTNP1_TFBS_dl
3R	13457146	3R_13457146_SNP [dm3] 3R_17631424_SNP [dm6]	T	A	4.850e^-5	0.141	UPSTREAM tRNA:CR31573 & 1 other INTRON CG43175	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	18478967	3L_18478967_SNP [dm3] 3L_18485867_SNP [dm6]	G	C	4.880e^-5	0.142	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	992660	2L_992660_SNP [dm3] 2L_992660_SNP [dm6]	G	T	4.887e^-5	0.142	INTERGENIC
X	11630953	X_11630953_SNP [dm3] X_11736920_SNP [dm6]	A	T	4.902e^-5	0.142	DOWNSTREAM CG15221 INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10421833	2L_10421833_SNP [dm3] 2L_10421833_SNP [dm6]	G	A	4.915e^-5	0.142	SYNONYMOUS_CODING pie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9505044	2L_9505044_SNP [dm3] 2L_9505044_SNP [dm6]	C	G	4.924e^-5	0.142	INTRON CG33298
3L	8463333	3L_8463333_SNP [dm3] 3L_8470233_SNP [dm6]	A	G	4.925e^-5	0.142	INTRON Gug
2L	11449506	2L_11449506_SNP [dm3] 2L_11449506_SNP [dm6]	T	C	4.939e^-5	0.142	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6131834	X_6131834_SNP [dm3] X_6237801_SNP [dm6]	G	A	4.955e^-5	0.142	INTRON CG14445
3R	6354726	3R_6354726_SNP [dm3] 3R_10529004_SNP [dm6]	T	C	4.958e^-5	0.142	INTRON hth	TF binding site mE1_TFBS_HSA
3L	18453315	3L_18453315_SNP [dm3] 3L_18460215_SNP [dm6]	C	T	4.969e^-5	0.142	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	18482078	3L_18482078_SNP [dm3] 3L_18488978_SNP [dm6]	C	T	4.994e^-5	0.143	INTRON AstC-R2	TF binding site mE1_TFBS_cad
2L	615855	2L_615855_SNP [dm3] 2L_615855_SNP [dm6]	T	A	5.000e^-5	0.143	INTERGENIC
X	21083710	X_21083710_SNP [dm3] X_21212683_SNP [dm6]	G	T	5.003e^-5	0.143	INTRON CG32521
2L	12841291	2L_12841291_SNP [dm3] 2L_12841291_SNP [dm6]	A	T	5.020e^-5	0.143	UPSTREAM CR44971 EXON CR44970
2L	18673570	2L_18673570_SNP [dm3] 2L_18673570_SNP [dm6]	T	A	5.037e^-5	0.143	NON_SYNONYMOUS_CODING Mst36Fb UPSTREAM CG43339
3L	15504913	3L_15504913_SNP [dm3] 3L_15511813_SNP [dm6]	A	C	5.039e^-5	0.143	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6102800	2L_6102800_SNP [dm3] 2L_6102800_SNP [dm6]	G	T	5.046e^-5	0.143	INTRON stai
X	19307626	X_19307626_SNP [dm3] X_19413593_SNP [dm6]	G	T	5.054e^-5	0.143	INTRON kek5
X	12721118	X_12721118_SNP [dm3] X_12827085_SNP [dm6]	T	C	5.064e^-5	0.143	INTRON Pde9
3L	2555123	3L_2555123_SNP [dm3] 3L_2555123_SNP [dm6]	C	T	5.078e^-5	0.143	UTR_3_PRIME msn UPSTREAM Spn DOWNSTREAM msn
3L	16030402	3L_16030402_SNP [dm3] 3L_16037302_SNP [dm6]	A	T	5.080e^-5	0.143	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	6115373	2L_6115373_SNP [dm3] 2L_6115373_SNP [dm6]	T	C	5.087e^-5	0.143	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	20955351	X_20955351_SNP [dm3] X_21084324_SNP [dm6]	G	A	5.102e^-5	0.143	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22027836	3R_22027836_SNP [dm3] 3R_26202114_SNP [dm6]	A	G	5.128e^-5	0.144	INTRON CR44320
3L	3929761	3L_3929761_DEL [dm3] 3L_3929761_DEL [dm6]	AAATAC	A	5.150e^-5	0.144	UPSTREAM Eip63F-1 INTRON Eip63F-1
2R	17792510	2R_17792510_SNP [dm3] 2R_21905005_SNP [dm6]	A	T	5.157e^-5	0.144	INTRON Fili
2L	5542884	2L_5542884_SNP [dm3] 2L_5542884_SNP [dm6]	A	T	5.160e^-5	0.144	UTR_5_PRIME Lam UPSTREAM Hel25E & 1 other INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	11808839	X_11808839_DEL [dm3] X_11914806_DEL [dm6]	GCCA	G	5.162e^-5	0.144	INTRON pot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14717581	2L_14717581_SNP [dm3] 2L_14717581_SNP [dm6]	C	T	5.170e^-5	0.144	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18448765	3L_18448765_SNP [dm3] 3L_18455665_SNP [dm6]	A	T	5.179e^-5	0.144	DOWNSTREAM CR44670 INTERGENIC
X	8829373	X_8829373_SNP [dm3] X_8935340_SNP [dm6]	A	G	5.180e^-5	0.144	INTRON rdgA
2L	15349755	2L_15349755_SNP [dm3] 2L_15349755_SNP [dm6]	A	C	5.225e^-5	0.145	INTERGENIC
2L	5145259	2L_5145259_SNP [dm3] 2L_5145259_SNP [dm6]	A	T	5.246e^-5	0.145	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5876087	3R_5876087_SNP [dm3] 3R_10050365_SNP [dm6]	C	T	5.262e^-5	0.145	SYNONYMOUS_CODING CG3925	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5151925	2L_5151925_SNP [dm3] 2L_5151925_SNP [dm6]	G	A	5.265e^-5	0.145	UTR_5_PRIME Msp300 INTRON Msp300	TF binding site mE1_TFBS_inv
3R	823317	3R_823317_SNP [dm3] 3R_4997595_SNP [dm6]	T	C	5.292e^-5	0.146	INTRON CG2022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11815600	X_11815600_SNP [dm3] X_11921567_SNP [dm6]	A	T	5.336e^-5	0.147	UPSTREAM CR32660 DOWNSTREAM Sclp INTRON Sclp
3L	18471326	3L_18471326_SNP [dm3] 3L_18478226_SNP [dm6]	C	T	5.401e^-5	0.148	UPSTREAM CR44673 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	15505091	3L_15505091_SNP [dm3] 3L_15511991_SNP [dm6]	C	T	5.402e^-5	0.148	START_GAINED Eip71CD UTR_5_PRIME Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10400896	X_10400896_SNP [dm3] X_10506863_SNP [dm6]	C	G	5.435e^-5	0.148	INTRON spri
3R	15261543	3R_15261543_SNP [dm3] 3R_19435821_SNP [dm6]	C	A	5.438e^-5	0.148	INTRON CG31221
X	11067509	X_11067509_SNP [dm3] X_11173476_SNP [dm6]	T	A	5.441e^-5	0.148	INTERGENIC
2L	12840689	2L_12840689_SNP [dm3] 2L_12840689_SNP [dm6]	A	T	5.450e^-5	0.148	UPSTREAM CR44970 & 1 other INTERGENIC
2L	5542833	2L_5542833_SNP [dm3] 2L_5542833_SNP [dm6]	C	A	5.454e^-5	0.148	UTR_5_PRIME Lam UPSTREAM Hel25E & 1 other INTRON Lam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	2222279	3R_2222279_SNP [dm3] 3R_6396557_SNP [dm6]	A	C	5.498e^-5	0.149	INTRON Dmtn
2L	10693380	2L_10693380_SNP [dm3] 2L_10693380_SNP [dm6]	T	A	5.499e^-5	0.149	SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	11556631	3L_11556631_INS [dm3] 3L_11563531_INS [dm6]	G	GTCCT	5.516e^-5	0.149	UTR_3_PRIME CG7394 UPSTREAM CG33267 DOWNSTREAM CG7394
2L	10660634	2L_10660634_SNP [dm3] 2L_10660634_SNP [dm6]	A	G	5.517e^-5	0.149	INTERGENIC
X	20962442	X_20962442_SNP [dm3] X_21091415_SNP [dm6]	A	G	5.518e^-5	0.149	INTERGENIC
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	5.534e^-5	0.149	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23992603	3R_23992603_SNP [dm3] 3R_28166881_SNP [dm6]	T	A	5.536e^-5	0.149	INTRON CG34354
3R	14588839	3R_14588839_SNP [dm3] 3R_18763117_SNP [dm6]	C	G	5.543e^-5	0.149	INTRON CG7720
3R	5421482	3R_5421482_SNP [dm3] 3R_9595760_SNP [dm6]	T	G	5.560e^-5	0.149	INTRON CG8312	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17877833	2L_17877833_SNP [dm3] 2L_17877833_SNP [dm6]	A	C	5.568e^-5	0.149	INTERGENIC
2L	5464933	2L_5464933_SNP [dm3] 2L_5464933_SNP [dm6]	G	C	5.570e^-5	0.149	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	5541729	X_5541729_SNP [dm3] X_5647696_SNP [dm6]	A	T	5.571e^-5	0.149	INTRON CG42492
2L	17868752	2L_17868752_SNP [dm3] 2L_17868752_SNP [dm6]	T	C	5.573e^-5	0.149	INTRON CadN2
3R	26373332	3R_26373332_SNP [dm3] 3R_30547610_SNP [dm6]	C	T	5.581e^-5	0.149	INTRON tmod
X	1697713	X_1697713_SNP [dm3] X_1803680_SNP [dm6]	G	A	5.596e^-5	0.149	INTRON CG42666	TF binding site mE1_TFBS_chinmo
3L	22969815	3L_22969815_SNP [dm3] 3L_22976715_SNP [dm6]	G	T	5.599e^-5	0.149	INTERGENIC	transposable element FlyBase
3L	18386985	3L_18386985_SNP [dm3] 3L_18393885_SNP [dm6]	G	C	5.618e^-5	0.149	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5866100	3R_5866100_SNP [dm3] 3R_10040378_SNP [dm6]	G	A	5.640e^-5	0.15	INTRON Mical
3R	6358352	3R_6358352_SNP [dm3] 3R_10532630_SNP [dm6]	G	T	5.653e^-5	0.15	INTRON hth
X	8535778	X_8535778_INS [dm3] X_8641745_INS [dm6]	T	TTGTAT	5.661e^-5	0.15	INTRON oc
3L	15843707	3L_15843707_SNP [dm3] 3L_15850607_SNP [dm6]	G	C	5.678e^-5	0.15	UTR_3_PRIME pHCl DOWNSTREAM pHCl
2R	19138691	2R_19138691_SNP [dm3] 2R_23251168_SNP [dm6]	A	G	5.690e^-5	0.15	INTERGENIC
3L	6979672	3L_6979672_SNP [dm3] 3L_6986572_SNP [dm6]	T	G	5.719e^-5	0.151	INTERGENIC
2L	6115377	2L_6115377_SNP [dm3] 2L_6115377_SNP [dm6]	T	A	5.725e^-5	0.151	INTRON stai	TF binding site BDTNP1_TFBS_dl
X	13284095	X_13284095_SNP [dm3] X_13390062_SNP [dm6]	T	A	5.730e^-5	0.151	DOWNSTREAM CR44620 & 1 other INTERGENIC
X	10469433	X_10469433_SNP [dm3] X_10575400_SNP [dm6]	T	G	5.750e^-5	0.151	NON_SYNONYMOUS_CODING spri
2R	7835522	2R_7835522_DEL [dm3] 2R_11948017_DEL [dm6]	TTGAATATACAAT...	C	5.762e^-5	0.151	INTRON CG13188
3L	16132752	3L_16132752_SNP [dm3] 3L_16139652_SNP [dm6]	G	T	5.775e^-5	0.151	UTR_3_PRIME CG5151 & 1 other
3L	1604477	3L_1604477_SNP [dm3] 3L_1604477_SNP [dm6]	C	T	5.792e^-5	0.151	SYNONYMOUS_CODING CG18170 START_GAINED CG33791 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	7491038	3R_7491038_SNP [dm3] 3R_11665316_SNP [dm6]	G	T	5.805e^-5	0.151	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7491061	3R_7491061_SNP [dm3] 3R_11665339_SNP [dm6]	C	G	5.805e^-5	0.151	INTRON CG42327	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12060748	3L_12060748_SNP [dm3] 3L_12067648_SNP [dm6]	T	A	5.809e^-5	0.151	UTR_3_PRIME Sema-5c	TF binding site mE1_TFBS_HSA
3L	2391181	3L_2391181_SNP [dm3] 3L_2391181_SNP [dm6]	T	A	5.834e^-5	0.151	UPSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	11941364	2L_11941364_SNP [dm3] 2L_11941364_SNP [dm6]	T	A	5.840e^-5	0.151	INTERGENIC
2L	11442116	2L_11442116_SNP [dm3] 2L_11442116_SNP [dm6]	A	G	5.861e^-5	0.152	INTRON salm	TF binding site mE1_TFBS_inv
X	6099712	X_6099712_SNP [dm3] X_6205679_SNP [dm6]	A	G	5.862e^-5	0.152	INTERGENIC
X	19461860	X_19461860_DEL [dm3] X_19567827_DEL [dm6]	TATATAGT	T	5.879e^-5	0.152	INTRON car
2L	6137055	2L_6137055_SNP [dm3] 2L_6137055_SNP [dm6]	G	A	5.909e^-5	0.152	INTERGENIC
2L	9865700	2L_9865700_SNP [dm3] 2L_9865700_SNP [dm6]	G	A	5.911e^-5	0.152	INTRON nAChRalpha6
2L	10660650	2L_10660650_SNP [dm3] 2L_10660650_SNP [dm6]	G	A	5.923e^-5	0.152	INTERGENIC
2L	14553241	2L_14553241_SNP [dm3] 2L_14553241_SNP [dm6]	C	T	5.936e^-5	0.152	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	4991729	3R_4991729_SNP [dm3] 3R_9166007_SNP [dm6]	G	C	5.943e^-5	0.152	INTRON pum
2R	10191885	2R_10191885_SNP [dm3] 2R_14304380_SNP [dm6]	T	C	5.944e^-5	0.152	INTERGENIC
2R	7838429	2R_7838429_SNP [dm3] 2R_11950924_SNP [dm6]	C	T	5.971e^-5	0.153	INTRON CG13188
3R	4782765	3R_4782765_SNP [dm3] 3R_8957043_SNP [dm6]	T	C	5.973e^-5	0.153	INTRON CG11966	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18860695	3L_18860695_INS [dm3] 3L_18867595_INS [dm6]	T	TA	5.979e^-5	0.153	UPSTREAM Dysb DOWNSTREAM CG14074 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6233586	2L_6233586_SNP [dm3] 2L_6233586_SNP [dm6]	T	A	5.985e^-5	0.153	INTERGENIC	TF binding site mE1_TFBS_HSA
X	3437539	X_3437539_SNP [dm3] X_3543506_SNP [dm6]	G	A	6.013e^-5	0.153	INTRON CG32791
3L	7975130	3L_7975130_SNP [dm3] 3L_7982030_SNP [dm6]	G	A	6.034e^-5	0.153	INTRON nmo	TF binding site BDTNP1_TFBS_dl
3R	7101386	3R_7101386_SNP [dm3] 3R_11275664_SNP [dm6]	C	A	6.046e^-5	0.153	INTRON CR31386
3L	15503434	3L_15503434_SNP [dm3] 3L_15510334_SNP [dm6]	A	G	6.050e^-5	0.153	UPSTREAM Eip71CD DOWNSTREAM Z600 INTRON gdl-ORF39 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	13928655	2L_13928655_SNP [dm3] 2L_13928655_SNP [dm6]	A	G	6.068e^-5	0.154	INTRON Ance-3
X	6131836	X_6131836_SNP [dm3] X_6237803_SNP [dm6]	T	C	6.077e^-5	0.154	INTRON CG14445
2L	2659067	2L_2659067_SNP [dm3] 2L_2659067_SNP [dm6]	C	G	6.084e^-5	0.154	INTERGENIC
3L	8841870	3L_8841870_DEL [dm3] 3L_8848770_DEL [dm6]	CAT	C	6.100e^-5	0.154	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10660665	2L_10660665_SNP [dm3] 2L_10660665_SNP [dm6]	G	A	6.139e^-5	0.154	INTERGENIC
2L	14409796	2L_14409796_SNP [dm3] 2L_14409796_SNP [dm6]	C	A	6.141e^-5	0.154	UPSTREAM elB EXON CR44733	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6569295	3R_6569295_SNP [dm3] 3R_10743573_SNP [dm6]	A	C	6.143e^-5	0.154	INTRON TkR86C
3L	3341577	3L_3341577_SNP [dm3] 3L_3341577_SNP [dm6]	T	C	6.143e^-5	0.154	INTRON kst
X	6131831	X_6131831_SNP [dm3] X_6237798_SNP [dm6]	C	T	6.167e^-5	0.154	INTRON CG14445
X	10272657	X_10272657_SNP [dm3] X_10378624_SNP [dm6]	A	G	6.172e^-5	0.154	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
X	16415972	X_16415972_SNP [dm3] X_16521939_SNP [dm6]	G	A	6.187e^-5	0.154	INTRON para
3L	21613563	3L_21613563_SNP [dm3] 3L_21620463_SNP [dm6]	A	T	6.189e^-5	0.154	UTR_3_PRIME CG7166 DOWNSTREAM CG11307 & 1 other
2L	17882573	2L_17882573_SNP [dm3] 2L_17882573_SNP [dm6]	T	C	6.191e^-5	0.154	INTERGENIC
X	10269734	X_10269734_SNP [dm3] X_10375701_SNP [dm6]	G	T	6.203e^-5	0.154	SYNONYMOUS_CODING CG2898 UPSTREAM CG32686 DOWNSTREAM CG32681 INTRON CG17841	TF binding site mE1_TFBS_chinmo
3L	15504633	3L_15504633_SNP [dm3] 3L_15511533_SNP [dm6]	G	T	6.211e^-5	0.154	UPSTREAM Eip71CD DOWNSTREAM gdl-ORF39 & 1 other INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5465028	2L_5465028_SNP [dm3] 2L_5465028_SNP [dm6]	A	G	6.213e^-5	0.154	INTRON mid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23852615	3R_23852615_SNP [dm3] 3R_28026893_SNP [dm6]	C	T	6.215e^-5	0.154	INTRON CG34362
2L	3675493	2L_3675493_SNP [dm3] 2L_3675493_SNP [dm6]	A	G	6.225e^-5	0.154	INTRON CG34340
3L	18650442	3L_18650442_SNP [dm3] 3L_18657342_SNP [dm6]	G	A	6.230e^-5	0.154	INTRON MYPT-75D
2L	3015610	2L_3015610_SNP [dm3] 2L_3015610_SNP [dm6]	C	G	6.238e^-5	0.154	UTR_3_PRIME CG17265 DOWNSTREAM CG17224	TF binding site BDTNP1_TFBS_twi
3L	15506804	3L_15506804_SNP [dm3] 3L_15513704_SNP [dm6]	C	T	6.245e^-5	0.154	DOWNSTREAM Eip71CD INTERGENIC	regulatory region REDfly_CRMs
X	1810299	X_1810299_SNP [dm3] X_1916266_SNP [dm6]	C	T	6.246e^-5	0.154	UTR_3_PRIME Rbcn-3B DOWNSTREAM Rbcn-3B INTRON mip130
2L	11449488	2L_11449488_SNP [dm3] 2L_11449488_SNP [dm6]	G	A	6.261e^-5	0.154	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6362323	3R_6362323_INS [dm3] 3R_10536601_INS [dm6]	T	TGTTCAAAGG	6.264e^-5	0.154	INTRON hth	TF binding site BDTNP1_TFBS_dl
X	2598786	X_2598786_SNP [dm3] X_2704753_SNP [dm6]	C	G	6.266e^-5	0.154	SYNONYMOUS_CODING eIF2B-beta UPSTREAM Csat	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4234697	2L_4234697_SNP [dm3] 2L_4234697_SNP [dm6]	A	T	6.271e^-5	0.154	INTERGENIC
X	6131830	X_6131830_SNP [dm3] X_6237797_SNP [dm6]	T	A	6.284e^-5	0.154	INTRON CG14445
3L	18449648	3L_18449648_SNP [dm3] 3L_18456548_SNP [dm6]	T	C	6.292e^-5	0.154	DOWNSTREAM CR44671 EXON CR44670
3R	17852770	3R_17852770_SNP [dm3] 3R_22027048_SNP [dm6]	G	T	6.296e^-5	0.154	UTR_5_PRIME Cchl UPSTREAM ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	706978	2L_706978_SNP [dm3] 2L_706978_SNP [dm6]	T	C	6.317e^-5	0.154	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA
2L	6102905	2L_6102905_DEL [dm3] 2L_6102905_DEL [dm6]	CACC	C	6.324e^-5	0.154	INTRON stai
2L	5842265	2L_5842265_SNP [dm3] 2L_5842265_SNP [dm6]	T	C	6.342e^-5	0.154	INTRON TrissinR
2L	5053384	2L_5053384_SNP [dm3] 2L_5053384_SNP [dm6]	T	C	6.351e^-5	0.154	UPSTREAM eIF-3p40 INTRON CG14040	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	19317141	X_19317141_SNP [dm3] X_19423108_SNP [dm6]	T	C	6.358e^-5	0.154	INTRON kek5
3L	16268365	3L_16268365_SNP [dm3] 3L_16275265_SNP [dm6]	C	T	6.366e^-5	0.154	INTERGENIC
2R	3817412	2R_3817412_SNP [dm3] 2R_7929907_SNP [dm6]	A	G	6.370e^-5	0.154	UTR_3_PRIME CG8791 & 1 other
X	13327470	X_13327470_SNP [dm3] X_13433437_SNP [dm6]	G	A	6.395e^-5	0.154	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14214480	2L_14214480_SNP [dm3] 2L_14214480_SNP [dm6]	A	T	6.412e^-5	0.154	INTRON Dyrk2
X	19092895	X_19092895_INS [dm3] X_19198862_INS [dm6]	G	GCTAT	6.430e^-5	0.154	DOWNSTREAM CG7990 INTRON CG7990
X	19092897	X_19092897_MNP [dm3] X_19198864_MNP [dm6]	ACG	GAT	6.430e^-5	0.154	DOWNSTREAM CG7990 INTRON CG7990
X	10971896	X_10971896_SNP [dm3] X_11077863_SNP [dm6]	T	C	6.438e^-5	0.154	INTRON sev	TF binding site mE1_TFBS_chinmo
3L	9652468	3L_9652468_SNP [dm3] 3L_9659368_SNP [dm6]	T	G	6.443e^-5	0.154	UTR_3_PRIME CG33696 INTRON fry
X	10940623	X_10940623_SNP [dm3] X_11046590_SNP [dm6]	G	A	6.443e^-5	0.154	INTRON CG11160
3R	15176947	3R_15176947_SNP [dm3] 3R_19351225_SNP [dm6]	A	G	6.450e^-5	0.154	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15504976	3L_15504976_SNP [dm3] 3L_15511876_SNP [dm6]	G	A	6.475e^-5	0.154	UPSTREAM Eip71CD DOWNSTREAM gdl INTRON Eip71CD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	6.484e^-5	0.154	DOWNSTREAM CR44415 INTERGENIC
3L	16149115	3L_16149115_SNP [dm3] 3L_16156015_SNP [dm6]	T	G	6.488e^-5	0.154	INTRON CG5151
3R	6973062	3R_6973062_SNP [dm3] 3R_11147340_SNP [dm6]	C	A	6.492e^-5	0.154	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	993879	2L_993879_SNP [dm3] 2L_993879_SNP [dm6]	G	T	6.494e^-5	0.154	INTERGENIC
3L	18860678	3L_18860678_SNP [dm3] 3L_18867578_SNP [dm6]	C	A	6.501e^-5	0.154	UPSTREAM Dysb DOWNSTREAM CG14074 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15340080	2L_15340080_SNP [dm3] 2L_15340080_SNP [dm6]	T	A	6.526e^-5	0.155	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4131218	3L_4131218_SNP [dm3] 3L_4131218_SNP [dm6]	G	A	6.541e^-5	0.155	SYNONYMOUS_CODING ens
3R	26373565	3R_26373565_SNP [dm3] 3R_30547843_SNP [dm6]	G	A	6.546e^-5	0.155	INTRON tmod
X	14760033	X_14760033_SNP [dm3] X_14866000_SNP [dm6]	C	G	6.566e^-5	0.155	UTR_5_PRIME CG9518 INTRON Flo2
2R	7842064	2R_7842064_SNP [dm3] 2R_11954559_SNP [dm6]	A	C	6.578e^-5	0.155	INTRON CG13188
3L	14796716	3L_14796716_SNP [dm3] 3L_14803616_SNP [dm6]	A	G	6.583e^-5	0.155	UPSTREAM gnu INTERGENIC
2L	11449504	2L_11449504_SNP [dm3] 2L_11449504_SNP [dm6]	A	T	6.632e^-5	0.156	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8011087	2L_8011087_SNP [dm3] 2L_8011087_SNP [dm6]	C	A	6.644e^-5	0.156	UPSTREAM Tg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	8336159	X_8336159_SNP [dm3] X_8442126_SNP [dm6]	C	T	6.664e^-5	0.156	UTR_5_PRIME CG12123 DOWNSTREAM CG1440
2L	14553628	2L_14553628_SNP [dm3] 2L_14553628_SNP [dm6]	C	T	6.677e^-5	0.157	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	993871	2L_993871_DEL [dm3] 2L_993871_DEL [dm6]	CGCTACA	T	6.689e^-5	0.157	INTERGENIC
3L	18466851	3L_18466851_SNP [dm3] 3L_18473751_SNP [dm6]	T	A	6.700e^-5	0.157	INTERGENIC
3R	6499347	3R_6499347_SNP [dm3] 3R_10673625_SNP [dm6]	A	G	6.703e^-5	0.157	INTERGENIC
2L	6233591	2L_6233591_SNP [dm3] 2L_6233591_SNP [dm6]	A	T	6.732e^-5	0.157	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6233605	2L_6233605_SNP [dm3] 2L_6233605_SNP [dm6]	G	C	6.732e^-5	0.157	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1951361	3R_1951361_SNP [dm3] 3R_6125639_SNP [dm6]	C	T	6.781e^-5	0.158	DOWNSTREAM CR43486 INTERGENIC
2L	5145567	2L_5145567_SNP [dm3] 2L_5145567_SNP [dm6]	C	G	6.782e^-5	0.158	UPSTREAM Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	6.814e^-5	0.158	INTRON CG43386
2R	18007623	2R_18007623_SNP [dm3] 2R_22120118_SNP [dm6]	A	T	6.816e^-5	0.158	INTRON Vrp1
2R	18007636	2R_18007636_SNP [dm3] 2R_22120131_SNP [dm6]	G	A	6.816e^-5	0.158	INTRON Vrp1
3L	12333691	3L_12333691_SNP [dm3] 3L_12340591_SNP [dm6]	A	T	6.824e^-5	0.158	INTRON CrzR	TF binding site mE1_TFBS_cad
2L	14544992	2L_14544992_SNP [dm3] 2L_14544992_SNP [dm6]	A	C	6.831e^-5	0.158	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12175948	2L_12175948_DEL [dm3] 2L_12175948_DEL [dm6]	TTTATTATCTAA...	T	6.847e^-5	0.158	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
X	10272651	X_10272651_SNP [dm3] X_10378618_SNP [dm6]	A	G	6.882e^-5	0.158	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
3L	21583931	3L_21583931_SNP [dm3] 3L_21590831_SNP [dm6]	G	C	6.892e^-5	0.158	INTRON TfAP-2
3L	2115086	3L_2115086_SNP [dm3] 3L_2115086_SNP [dm6]	C	A	6.897e^-5	0.158	INTRON sls
2L	8882496	2L_8882496_SNP [dm3] 2L_8882496_SNP [dm6]	G	A	6.904e^-5	0.158	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8882880	2L_8882880_SNP [dm3] 2L_8882880_SNP [dm6]	T	A	6.904e^-5	0.158	INTERGENIC
2L	8884463	2L_8884463_SNP [dm3] 2L_8884463_SNP [dm6]	T	C	6.904e^-5	0.158	INTERGENIC
X	6131828	X_6131828_SNP [dm3] X_6237795_SNP [dm6]	G	A	6.909e^-5	0.158	INTRON CG14445
3R	15093336	3R_15093336_SNP [dm3] 3R_19267614_SNP [dm6]	A	G	6.910e^-5	0.158	INTERGENIC
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	6.913e^-5	0.158	INTRON hth
3R	13483007	3R_13483007_SNP [dm3] 3R_17657285_SNP [dm6]	G	A	6.916e^-5	0.158	DOWNSTREAM tRNA:CR31577 INTRON CG14322
2R	18365653	2R_18365653_SNP [dm3] 2R_22478148_SNP [dm6]	G	A	6.928e^-5	0.158	UPSTREAM CG45063 & 1 other INTERGENIC
2L	2656718	2L_2656718_SNP [dm3] 2L_2656718_SNP [dm6]	C	G	6.942e^-5	0.158	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
3L	24082280	3L_24082280_SNP [dm3] 3L_24089180_SNP [dm6]	C	T	6.960e^-5	0.158	INTRON Snap25
3R	6365953	3R_6365953_SNP [dm3] 3R_10540231_SNP [dm6]	G	A	6.978e^-5	0.158	INTRON hth	TF binding site mE1_TFBS_cad
X	16415944	X_16415944_INS [dm3] X_16521911_INS [dm6]	TG	ACTAGA	6.979e^-5	0.158	INTRON para
3R	6099893	3R_6099893_SNP [dm3] 3R_10274171_SNP [dm6]	G	A	6.991e^-5	0.158	INTRON CG43143
3L	18449758	3L_18449758_SNP [dm3] 3L_18456658_SNP [dm6]	T	A	7.010e^-5	0.158	DOWNSTREAM CR44671 EXON CR44670
2L	5724118	2L_5724118_DEL [dm3] 2L_5724118_DEL [dm6]	CGC	C	7.018e^-5	0.158	UPSTREAM CG11030 DOWNSTREAM sip1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	17051918	X_17051918_SNP [dm3] X_17157885_SNP [dm6]	A	G	7.030e^-5	0.158	SYNONYMOUS_CODING xmas-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5140129	2L_5140129_SNP [dm3] 2L_5140129_SNP [dm6]	G	T	7.046e^-5	0.159	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_HSA
2L	13889644	2L_13889644_SNP [dm3] 2L_13889644_SNP [dm6]	G	C	7.056e^-5	0.159	INTRON CenG1A
2L	5069325	2L_5069325_SNP [dm3] 2L_5069325_SNP [dm6]	A	T	7.068e^-5	0.159	DOWNSTREAM mir-2495 & 1 other INTRON qtc
2L	996425	2L_996425_SNP [dm3] 2L_996425_SNP [dm6]	G	T	7.081e^-5	0.159	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1610523	3L_1610523_DEL [dm3] 3L_1610523_DEL [dm6]	TCATTCATCGGATT...	T	7.099e^-5	0.159	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
2R	12676775	2R_12676775_SNP [dm3] 2R_16789270_SNP [dm6]	A	G	7.138e^-5	0.16	SYNONYMOUS_CODING CG5522
3L	4060898	3L_4060898_SNP [dm3] 3L_4060898_SNP [dm6]	A	G	7.143e^-5	0.16	NON_SYNONYMOUS_CODING CG18869
2L	14520380	2L_14520380_INS [dm3] 2L_14520380_INS [dm6]	T	TATGTGGAGCAT...	7.169e^-5	0.16	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	810147	3R_810147_SNP [dm3] 3R_4984425_SNP [dm6]	G	A	7.175e^-5	0.16	UPSTREAM CG14662 DOWNSTREAM CR43424 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	16030488	3L_16030488_SNP [dm3] 3L_16037388_SNP [dm6]	C	A	7.180e^-5	0.16	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn
2R	319166	2R_319166_SNP [dm3] 2R_4431661_SNP [dm6]	T	C	7.190e^-5	0.16	INTRON Gprk1
X	6131822	X_6131822_MNP [dm3] X_6237789_MNP [dm6]	TAT	CCA	7.218e^-5	0.16	INTRON CG14445
2L	12175947	2L_12175947_SNP [dm3] 2L_12175947_SNP [dm6]	C	A	7.220e^-5	0.16	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3L	3846984	3L_3846984_SNP [dm3] 3L_3846984_SNP [dm6]	T	G	7.262e^-5	0.161	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
2L	1040342	2L_1040342_SNP [dm3] 2L_1040342_SNP [dm6]	T	C	7.272e^-5	0.161	INTRON IA-2	TF binding site mE1_TFBS_chinmo
2R	3807712	2R_3807712_SNP [dm3] 2R_7920207_SNP [dm6]	C	T	7.299e^-5	0.161	SYNONYMOUS_CODING Cul1 DOWNSTREAM Or43b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3895574	2R_3895574_SNP [dm3] 2R_8008069_SNP [dm6]	C	T	7.309e^-5	0.161	NON_SYNONYMOUS_CODING Odc2	TF binding site mE1_TFBS_cad
2L	14553161	2L_14553161_SNP [dm3] 2L_14553161_SNP [dm6]	G	C	7.309e^-5	0.161	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2L	11066133	2L_11066133_SNP [dm3] 2L_11066133_SNP [dm6]	G	A	7.312e^-5	0.161	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5119646	2L_5119646_SNP [dm3] 2L_5119646_SNP [dm6]	C	A	7.332e^-5	0.161	INTRON Msp300
3R	17803891	3R_17803891_SNP [dm3] 3R_21978169_SNP [dm6]	C	T	7.337e^-5	0.161	INTRON Eip93F
2R	18790237	2R_18790237_SNP [dm3] 2R_22902714_SNP [dm6]	T	A	7.342e^-5	0.161	INTRON nahoda
2L	16825521	2L_16825521_SNP [dm3] 2L_16825521_SNP [dm6]	G	A	7.347e^-5	0.161	SPLICE_SITE_REGION mdy UPSTREAM Cas INTRON mdy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5191446	2L_5191446_SNP [dm3] 2L_5191446_SNP [dm6]	G	A	7.355e^-5	0.161	SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6099314	X_6099314_SNP [dm3] X_6205281_SNP [dm6]	A	T	7.370e^-5	0.161	INTERGENIC
2R	7836977	2R_7836977_SNP [dm3] 2R_11949472_SNP [dm6]	C	A	7.383e^-5	0.161	INTRON CG13188
2R	4758653	2R_4758653_SNP [dm3] 2R_8871148_SNP [dm6]	A	G	7.398e^-5	0.161	INTRON RyR
3L	18858891	3L_18858891_SNP [dm3] 3L_18865791_SNP [dm6]	G	C	7.405e^-5	0.161	UPSTREAM CG14074 DOWNSTREAM CG6865 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	17868587	2L_17868587_SNP [dm3] 2L_17868587_SNP [dm6]	G	A	7.436e^-5	0.161	INTRON CadN2
2L	12175935	2L_12175935_DEL [dm3] 2L_12175935_DEL [dm6]	ATATAT	G	7.437e^-5	0.161	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3L	1408015	3L_1408015_DEL [dm3] 3L_1408015_DEL [dm6]	CAAAGGCCAAAAC...	C	7.444e^-5	0.161	INTRON Ptp61F
X	6103463	X_6103463_SNP [dm3] X_6209430_SNP [dm6]	G	T	7.451e^-5	0.161	INTERGENIC
X	6103478	X_6103478_SNP [dm3] X_6209445_SNP [dm6]	G	A	7.451e^-5	0.161	INTERGENIC
X	6103482	X_6103482_SNP [dm3] X_6209449_SNP [dm6]	G	A	7.451e^-5	0.161	INTERGENIC
2L	17875476	2L_17875476_SNP [dm3] 2L_17875476_SNP [dm6]	T	A	7.455e^-5	0.161	UPSTREAM CadN2 INTERGENIC
3R	24105625	3R_24105625_SNP [dm3] 3R_28279903_SNP [dm6]	A	T	7.473e^-5	0.161	INTERGENIC
2R	6636228	2R_6636228_SNP [dm3] 2R_10748723_SNP [dm6]	G	T	7.476e^-5	0.161	INTRON CG33144
3L	15866557	3L_15866557_SNP [dm3] 3L_15873457_SNP [dm6]	A	G	7.484e^-5	0.161	INTRON pHCl
3L	18452378	3L_18452378_SNP [dm3] 3L_18459278_SNP [dm6]	C	G	7.502e^-5	0.162	DOWNSTREAM CG32196 INTERGENIC
3R	14588848	3R_14588848_SNP [dm3] 3R_18763126_SNP [dm6]	T	C	7.518e^-5	0.162	INTRON CG7720
X	11937473	X_11937473_SNP [dm3] X_12043440_SNP [dm6]	T	C	7.529e^-5	0.162	UPSTREAM CR43960 & 1 other INTERGENIC
3R	14655839	3R_14655839_DEL [dm3] 3R_18830117_DEL [dm6]	TAGTAAACAGCTGAAGTTTA...	T	7.547e^-5	0.162	INTRON CG18208
3R	23115754	3R_23115754_SNP [dm3] 3R_27290032_SNP [dm6]	T	C	7.563e^-5	0.162	SYNONYMOUS_CODING Hmu	TF binding site mE1_TFBS_cad
3R	15261279	3R_15261279_SNP [dm3] 3R_19435557_SNP [dm6]	C	T	7.568e^-5	0.162	INTRON CG31221
2L	17956456	2L_17956456_SNP [dm3] 2L_17956456_SNP [dm6]	A	G	7.575e^-5	0.162	INTERGENIC
2L	10137372	2L_10137372_SNP [dm3] 2L_10137372_SNP [dm6]	A	G	7.613e^-5	0.163	START_GAINED CG44153 UTR_5_PRIME CG44153	TF binding site mE1_TFBS_cad
X	10957224	X_10957224_SNP [dm3] X_11063191_SNP [dm6]	G	A	7.627e^-5	0.163	UPSTREAM CG1537 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19964488	2R_19964488_DEL [dm3] 2R_24076965_DEL [dm6]	TTCCAA	T	7.659e^-5	0.163	INTRON Mlp60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	1799118	X_1799118_SNP [dm3] X_1905085_SNP [dm6]	C	G	7.667e^-5	0.163	NON_SYNONYMOUS_CODING Edem1
X	1802423	X_1802423_SNP [dm3] X_1908390_SNP [dm6]	G	A	7.667e^-5	0.163	START_GAINED Edem1 UTR_5_PRIME Edem1 UPSTREAM Rbcn-3B & 1 other INTRON mip130	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	10924773	2L_10924773_SNP [dm3] 2L_10924773_SNP [dm6]	T	C	7.675e^-5	0.163	INTRON dpr2
3L	1848071	3L_1848071_SNP [dm3] 3L_1848071_SNP [dm6]	G	A	7.684e^-5	0.163	INTERGENIC
3L	18478885	3L_18478885_SNP [dm3] 3L_18485785_SNP [dm6]	C	T	7.728e^-5	0.163	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	18673450	2L_18673450_SNP [dm3] 2L_18673450_SNP [dm6]	T	A	7.728e^-5	0.163	SYNONYMOUS_CODING Mst36Fb UPSTREAM CG43339
3L	22936482	3L_22936482_SNP [dm3] 3L_22943382_SNP [dm6]	C	G	7.728e^-5	0.163	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12643375	3R_12643375_DEL [dm3] 3R_16817653_DEL [dm6]	ACGA	A	7.740e^-5	0.163	INTRON abd-A	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10274015	X_10274015_SNP [dm3] X_10379982_SNP [dm6]	T	C	7.741e^-5	0.163	SYNONYMOUS_CODING CG32681 INTRON CG17841
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	7.758e^-5	0.163	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	5145110	2L_5145110_INS [dm3] 2L_5145110_INS [dm6]	A	ATGTA	7.764e^-5	0.163	INTRON Msp300	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	17468864	2R_17468864_SNP [dm3] 2R_21581359_SNP [dm6]	G	T	7.778e^-5	0.164	INTERGENIC
3R	7496743	3R_7496743_SNP [dm3] 3R_11671021_SNP [dm6]	A	G	7.818e^-5	0.164	INTRON CG42327
2L	2645676	2L_2645676_SNP [dm3] 2L_2645676_SNP [dm6]	C	T	7.853e^-5	0.165	UPSTREAM CR43852 DOWNSTREAM CG9962 INTERGENIC
2L	2179164	2L_2179164_SNP [dm3] 2L_2179164_SNP [dm6]	T	C	7.867e^-5	0.165	UPSTREAM aop INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5060200	2L_5060200_SNP [dm3] 2L_5060200_SNP [dm6]	G	A	7.893e^-5	0.165	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA
2L	14514510	2L_14514510_SNP [dm3] 2L_14514510_SNP [dm6]	G	A	7.898e^-5	0.165	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	14594029	3R_14594029_INS [dm3] 3R_18768307_INS [dm6]	C	TGCA	7.907e^-5	0.165	INTRON CG7720
X	10401923	X_10401923_SNP [dm3] X_10507890_SNP [dm6]	C	A	7.917e^-5	0.165	INTRON spri
2L	13928788	2L_13928788_SNP [dm3] 2L_13928788_SNP [dm6]	T	C	7.924e^-5	0.165	INTRON Ance-3
2L	13928791	2L_13928791_SNP [dm3] 2L_13928791_SNP [dm6]	G	A	7.924e^-5	0.165	INTRON Ance-3
X	3172638	X_3172638_SNP [dm3] X_3278605_SNP [dm6]	G	T	7.946e^-5	0.165	INTRON dnc
2L	9989924	2L_9989924_SNP [dm3] 2L_9989924_SNP [dm6]	G	T	7.952e^-5	0.165	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	12175971	2L_12175971_DEL [dm3] 2L_12175971_DEL [dm6]	TTC	T	7.953e^-5	0.165	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
3R	13557283	3R_13557283_SNP [dm3] 3R_17731561_SNP [dm6]	T	G	7.968e^-5	0.165	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10269172	X_10269172_SNP [dm3] X_10375139_SNP [dm6]	C	G	7.979e^-5	0.165	NON_SYNONYMOUS_CODING CG32686 UTR_5_PRIME CG32686 UPSTREAM CG2898 INTRON CG17841	TF binding site mE1_TFBS_chinmo
3R	2222276	3R_2222276_SNP [dm3] 3R_6396554_SNP [dm6]	A	G	7.993e^-5	0.165	INTRON Dmtn
X	20958887	X_20958887_SNP [dm3] X_21087860_SNP [dm6]	A	G	8.001e^-5	0.165	INTERGENIC
X	16415978	X_16415978_SNP [dm3] X_16521945_SNP [dm6]	T	G	8.034e^-5	0.166	INTRON para
3L	18493927	3L_18493927_SNP [dm3] 3L_18500827_SNP [dm6]	T	C	8.052e^-5	0.166	INTRON AstC-R2
3R	14588846	3R_14588846_SNP [dm3] 3R_18763124_SNP [dm6]	G	T	8.056e^-5	0.166	INTRON CG7720
3R	6356492	3R_6356492_SNP [dm3] 3R_10530770_SNP [dm6]	A	C	8.066e^-5	0.166	INTRON hth
X	9410132	X_9410132_SNP [dm3] X_9516099_SNP [dm6]	G	T	8.074e^-5	0.166	INTRON CG32700
2L	12175942	2L_12175942_SNP [dm3] 2L_12175942_SNP [dm6]	T	G	8.075e^-5	0.166	INTRON aret & 1 other	TF binding site mE1_TFBS_HSA
X	12173912	X_12173912_SNP [dm3] X_12279879_SNP [dm6]	G	A	8.087e^-5	0.166	INTRON Ten-a
3R	16057879	3R_16057879_SNP [dm3] 3R_20232157_SNP [dm6]	T	A	8.091e^-5	0.166	INTRON Nlg4
3L	8615343	3L_8615343_SNP [dm3] 3L_8622243_SNP [dm6]	G	A	8.100e^-5	0.166	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
2L	15304116	2L_15304116_DEL [dm3] 2L_15304116_DEL [dm6]	AA	A	8.109e^-5	0.166	INTERGENIC
2R	4639374	2R_4639374_SNP [dm3] 2R_8751869_SNP [dm6]	C	T	8.110e^-5	0.166	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc
3R	14391963	3R_14391963_SNP [dm3] 3R_18566241_SNP [dm6]	T	A	8.148e^-5	0.166	INTERGENIC
X	20958885	X_20958885_SNP [dm3] X_21087858_SNP [dm6]	A	G	8.162e^-5	0.166	INTERGENIC
3R	2222306	3R_2222306_SNP [dm3] 3R_6396584_SNP [dm6]	A	G	8.186e^-5	0.166	INTRON Dmtn
X	11238168	X_11238168_SNP [dm3] X_11344135_SNP [dm6]	G	A	8.199e^-5	0.166	UTR_3_PRIME CG34348 DOWNSTREAM CG1597	TF binding site mE1_TFBS_sens
X	6099256	X_6099256_DEL [dm3] X_6205223_DEL [dm6]	TT	T	8.209e^-5	0.166	INTERGENIC
3L	8840102	3L_8840102_SNP [dm3] 3L_8847002_SNP [dm6]	C	A	8.224e^-5	0.166	INTRON dally
2R	14529093	2R_14529093_DEL [dm3] 2R_18641588_DEL [dm6]	AA	A	8.233e^-5	0.166	DOWNSTREAM CheA56a INTRON SP2637	TF binding site mE1_TFBS_cad
2L	4761617	2L_4761617_SNP [dm3] 2L_4761617_SNP [dm6]	C	T	8.240e^-5	0.166	INTRON CG15630
3L	18480063	3L_18480063_SNP [dm3] 3L_18486963_SNP [dm6]	G	A	8.242e^-5	0.166	SYNONYMOUS_CODING AstC-R2
3L	2799773	3L_2799773_SNP [dm3] 3L_2799773_SNP [dm6]	G	A	8.250e^-5	0.166	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	6366541	3R_6366541_SNP [dm3] 3R_10540819_SNP [dm6]	A	T	8.254e^-5	0.166	INTRON hth
3L	1408005	3L_1408005_SNP [dm3] 3L_1408005_SNP [dm6]	A	G	8.271e^-5	0.167	INTRON Ptp61F
2L	12647827	2L_12647827_SNP [dm3] 2L_12647827_SNP [dm6]	C	A	8.275e^-5	0.167	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	1873002	2L_1873002_DEL [dm3] 2L_1873002_DEL [dm6]	TT	T	8.300e^-5	0.167	INTRON CG31663 EXON CR44075
2L	17879440	2L_17879440_SNP [dm3] 2L_17879440_SNP [dm6]	C	T	8.325e^-5	0.167	INTERGENIC
3R	6053866	3R_6053866_SNP [dm3] 3R_10228144_SNP [dm6]	G	A	8.331e^-5	0.167	INTRON CG42795
X	15158631	X_15158631_SNP [dm3] X_15264598_SNP [dm6]	A	T	8.352e^-5	0.167	INTERGENIC
2L	10660659	2L_10660659_SNP [dm3] 2L_10660659_SNP [dm6]	G	T	8.371e^-5	0.168	INTERGENIC
3R	4391378	3R_4391378_SNP [dm3] 3R_8565656_SNP [dm6]	G	C	8.387e^-5	0.168	NON_SYNONYMOUS_CODING Cenp-C	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	7224260	3R_7224260_SNP [dm3] 3R_11398538_SNP [dm6]	C	A	8.429e^-5	0.168	UTR_3_PRIME pros
3R	23560943	3R_23560943_SNP [dm3] 3R_27735221_SNP [dm6]	G	T	8.442e^-5	0.168	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6359917	3R_6359917_SNP [dm3] 3R_10534195_SNP [dm6]	G	A	8.444e^-5	0.168	INTRON hth
3R	6363132	3R_6363132_SNP [dm3] 3R_10537410_SNP [dm6]	C	G	8.444e^-5	0.168	INTRON hth	enhancer mE1_CBP_Enhancers
3R	6367782	3R_6367782_SNP [dm3] 3R_10542060_SNP [dm6]	C	G	8.444e^-5	0.168	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	957305	2L_957305_SNP [dm3] 2L_957305_SNP [dm6]	C	T	8.458e^-5	0.168	SYNONYMOUS_CODING CG4341
3L	18430368	3L_18430368_SNP [dm3] 3L_18437268_SNP [dm6]	T	A	8.472e^-5	0.168	INTERGENIC	TF binding site mE1_TFBS_Kr
X	9596911	X_9596911_SNP [dm3] X_9702878_SNP [dm6]	T	C	8.494e^-5	0.168	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	19092912	X_19092912_SNP [dm3] X_19198879_SNP [dm6]	A	T	8.499e^-5	0.168	DOWNSTREAM CG7990 INTRON CG7990
2R	5666721	2R_5666721_SNP [dm3] 2R_9779216_SNP [dm6]	A	T	8.507e^-5	0.168	INTRON CG1688	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18875119	3L_18875119_SNP [dm3] 3L_18882019_SNP [dm6]	C	T	8.528e^-5	0.168	INTRON CG3961
2L	16830514	2L_16830514_SNP [dm3] 2L_16830514_SNP [dm6]	C	A	8.529e^-5	0.168	INTRON CG31739	TF binding site mE1_TFBS_cad
X	13140901	X_13140901_SNP [dm3] X_13246868_SNP [dm6]	T	G	8.562e^-5	0.169	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	4109894	3L_4109894_SNP [dm3] 3L_4109894_SNP [dm6]	G	C	8.564e^-5	0.169	INTRON Ack	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19158783	X_19158783_SNP [dm3] X_19264750_SNP [dm6]	A	G	8.578e^-5	0.169	NON_SYNONYMOUS_CODING Vav INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15276638	2L_15276638_SNP [dm3] 2L_15276638_SNP [dm6]	A	C	8.581e^-5	0.169	INTERGENIC
2L	10672161	2L_10672161_SNP [dm3] 2L_10672161_SNP [dm6]	T	A	8.592e^-5	0.169	DOWNSTREAM CG31871 INTERGENIC
3L	3616987	3L_3616987_SNP [dm3] 3L_3616987_SNP [dm6]	A	G	8.618e^-5	0.169	DOWNSTREAM CG10357 INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
2R	7839622	2R_7839622_SNP [dm3] 2R_11952117_SNP [dm6]	T	A	8.630e^-5	0.169	INTRON CG13188
X	12646171	X_12646171_SNP [dm3] X_12752138_SNP [dm6]	C	T	8.642e^-5	0.169	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14869299	2R_14869299_SNP [dm3] 2R_18981794_SNP [dm6]	G	A	8.649e^-5	0.169	INTERGENIC
2L	5079109	2L_5079109_SNP [dm3] 2L_5079109_SNP [dm6]	C	G	8.657e^-5	0.169	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	510350	2R_510350_SNP [dm3] 2R_4622845_SNP [dm6]	A	G	8.668e^-5	0.169	UPSTREAM CR44101 INTERGENIC
2L	11436001	2L_11436001_SNP [dm3] 2L_11436001_SNP [dm6]	T	G	8.675e^-5	0.169	INTRON salm	TF binding site BDTNP1_TFBS_twi
3R	23769740	3R_23769740_SNP [dm3] 3R_27944018_SNP [dm6]	G	A	8.693e^-5	0.169	SYNONYMOUS_CODING mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16104897	3R_16104897_SNP [dm3] 3R_20279175_SNP [dm6]	A	G	8.698e^-5	0.169	INTRON cic
2L	13937984	2L_13937984_SNP [dm3] 2L_13937984_SNP [dm6]	T	A	8.715e^-5	0.169	INTRON Ance-3
2L	1009043	2L_1009043_SNP [dm3] 2L_1009043_SNP [dm6]	A	G	8.722e^-5	0.169	UTR_3_PRIME IA-2
X	16435259	X_16435259_SNP [dm3] X_16541226_SNP [dm6]	G	T	8.735e^-5	0.169	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
X	6476445	X_6476445_SNP [dm3] X_6582412_SNP [dm6]	A	G	8.770e^-5	0.17	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	13995333	2R_13995333_SNP [dm3] 2R_18107828_SNP [dm6]	T	A	8.786e^-5	0.17	INTRON CG5756
2L	11917641	2L_11917641_SNP [dm3] 2L_11917641_SNP [dm6]	G	A	8.812e^-5	0.17	INTRON Pde1c
3R	17682784	3R_17682784_SNP [dm3] 3R_21857062_SNP [dm6]	G	C	8.869e^-5	0.171	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	18453604	3L_18453604_SNP [dm3] 3L_18460504_SNP [dm6]	A	T	8.871e^-5	0.171	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	18673619	2L_18673619_SNP [dm3] 2L_18673619_SNP [dm6]	C	G	8.885e^-5	0.171	NON_SYNONYMOUS_CODING Mst36Fb UPSTREAM CG43339
3R	14086572	3R_14086572_SNP [dm3] 3R_18260850_SNP [dm6]	T	C	8.906e^-5	0.171	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	8.906e^-5	0.171	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	8.917e^-5	0.171	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	2930952	X_2930952_SNP [dm3] X_3036919_SNP [dm6]	C	A	8.924e^-5	0.171	INTRON kirre
3R	2143849	3R_2143849_SNP [dm3] 3R_6318127_SNP [dm6]	T	A	8.955e^-5	0.172	INTRON Osi17
X	16384572	X_16384572_SNP [dm3] X_16490539_SNP [dm6]	G	A	8.995e^-5	0.172	INTRON para
2L	8885531	2L_8885531_SNP [dm3] 2L_8885531_SNP [dm6]	T	C	9.002e^-5	0.172	INTERGENIC
2L	5541973	2L_5541973_SNP [dm3] 2L_5541973_SNP [dm6]	A	T	9.031e^-5	0.172	SPLICE_SITE_REGION Hel25E UTR_5_PRIME Hel25E UPSTREAM Lam INTRON Hel25E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	12625212	X_12625212_SNP [dm3] X_12731179_SNP [dm6]	T	C	9.032e^-5	0.172	SYNONYMOUS_CODING Smr UPSTREAM CR43963
2L	12823818	2L_12823818_SNP [dm3] 2L_12823818_SNP [dm6]	A	T	9.046e^-5	0.172	INTERGENIC
3R	1454499	3R_1454499_SNP [dm3] 3R_5628777_SNP [dm6]	A	G	9.047e^-5	0.172	NON_SYNONYMOUS_CODING CG31551	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	9.057e^-5	0.172	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3L	18649568	3L_18649568_SNP [dm3] 3L_18656468_SNP [dm6]	A	C	9.057e^-5	0.172	INTRON MYPT-75D
2L	2177356	2L_2177356_SNP [dm3] 2L_2177356_SNP [dm6]	T	A	9.063e^-5	0.172	INTRON aop	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	6102968	2L_6102968_SNP [dm3] 2L_6102968_SNP [dm6]	G	T	9.182e^-5	0.174	INTRON stai
2L	4419056	2L_4419056_SNP [dm3] 2L_4419056_SNP [dm6]	A	T	9.185e^-5	0.174	UPSTREAM tRNA:CR31963 INTRON CG15431
2R	7835618	2R_7835618_SNP [dm3] 2R_11948113_SNP [dm6]	A	T	9.208e^-5	0.174	INTRON CG13188
2L	16831344	2L_16831344_SNP [dm3] 2L_16831344_SNP [dm6]	C	T	9.212e^-5	0.174	NON_SYNONYMOUS_CODING CG31739 DOWNSTREAM CG13282	TF binding site mE1_TFBS_cad
2L	14537178	2L_14537178_SNP [dm3] 2L_14537178_SNP [dm6]	A	G	9.219e^-5	0.174	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1010550	2L_1010550_DEL [dm3] 2L_1010550_DEL [dm6]	TT	T	9.228e^-5	0.174	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
3R	24108256	3R_24108256_SNP [dm3] 3R_28282534_SNP [dm6]	C	G	9.238e^-5	0.174	UPSTREAM CG34436 INTERGENIC
X	13284017	X_13284017_SNP [dm3] X_13389984_SNP [dm6]	T	C	9.250e^-5	0.174	DOWNSTREAM CR44620 & 1 other INTERGENIC
3L	21406054	3L_21406054_SNP [dm3] 3L_21412954_SNP [dm6]	A	G	9.260e^-5	0.174	INTRON rgn
3R	13510796	3R_13510796_SNP [dm3] 3R_17685074_SNP [dm6]	A	C	9.267e^-5	0.174	UPSTREAM CG31360 & 1 other DOWNSTREAM CG31249 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	5796406	2L_5796406_SNP [dm3] 2L_5796406_SNP [dm6]	A	G	9.280e^-5	0.174	INTRON CG9171
2L	4899196	2L_4899196_SNP [dm3] 2L_4899196_SNP [dm6]	G	T	9.285e^-5	0.174	INTRON CG3036
2L	2275942	2L_2275942_SNP [dm3] 2L_2275942_SNP [dm6]	C	G	9.288e^-5	0.174	INTRON CR43753 EXON CR43753

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_2L phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results