DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.898e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3145 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12377573	3L_12377573_INS [dm3] 3L_12384473_INS [dm6]	T	TGGTGCATGTAAGTACGTGA...	7.859e^-8	0.07	INTRON Ncc69
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	1.457e^-7	0.07	UPSTREAM CR43769 INTERGENIC
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	2.021e^-7	0.07	INTRON CG43386
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	2.247e^-7	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	2.247e^-7	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	2.247e^-7	0.07	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
2L	9280130	2L_9280130_SNP [dm3] 2L_9280130_SNP [dm6]	A	T	5.337e^-7	0.119	INTRON Ggamma30A
3L	12377557	3L_12377557_SNP [dm3] 3L_12384457_SNP [dm6]	A	T	5.403e^-7	0.119	INTRON Ncc69
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	5.703e^-7	0.119	INTRON Ggamma30A
3L	8606750	3L_8606750_SNP [dm3] 3L_8613650_SNP [dm6]	C	T	7.060e^-7	0.132	SPLICE_SITE_REGION CG6282 INTRON CG6282
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	8.827e^-7	0.151	INTRON shep
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	9.764e^-7	0.153	UTR_3_PRIME CG18208
X	7489772	X_7489772_SNP [dm3] X_7595739_SNP [dm6]	T	A	1.153e^-6	0.166	INTERGENIC	regulatory region REDfly_CRMs
2L	8893211	2L_8893211_SNP [dm3] 2L_8893211_SNP [dm6]	G	A	1.314e^-6	0.176	INTERGENIC
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	1.655e^-6	0.207	DOWNSTREAM CG42713 INTERGENIC
X	10280202	X_10280202_DEL [dm3] X_10386169_DEL [dm6]	TT	T	1.959e^-6	0.23	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1264742	3R_1264742_SNP [dm3] 3R_5439020_SNP [dm6]	T	C	2.516e^-6	0.254	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	12377542	3L_12377542_SNP [dm3] 3L_12384442_SNP [dm6]	G	A	2.529e^-6	0.254	INTRON Ncc69
2L	10461455	2L_10461455_SNP [dm3] 2L_10461455_SNP [dm6]	T	C	2.581e^-6	0.254	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	2.705e^-6	0.254	UPSTREAM CG6018 INTRON px
2L	9280115	2L_9280115_SNP [dm3] 2L_9280115_SNP [dm6]	A	T	3.242e^-6	0.282	INTRON Ggamma30A
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	3.438e^-6	0.282	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
2R	18439022	2R_18439022_SNP [dm3] 2R_22551517_SNP [dm6]	T	C	3.463e^-6	0.282	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18213474	3L_18213474_SNP [dm3] 3L_18220374_SNP [dm6]	C	G	3.981e^-6	0.286	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	12377544	3L_12377544_SNP [dm3] 3L_12384444_SNP [dm6]	T	A	4.154e^-6	0.286	INTRON Ncc69
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	4.155e^-6	0.286	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	4.170e^-6	0.286	UTR_3_PRIME CG18208
3R	7174174	3R_7174174_SNP [dm3] 3R_11348452_SNP [dm6]	A	G	4.316e^-6	0.286	UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5364874	X_5364874_SNP [dm3] X_5470841_SNP [dm6]	C	T	4.428e^-6	0.286	INTRON SPR
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	4.811e^-6	0.297	UPSTREAM CG42713 INTERGENIC
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	4.907e^-6	0.297	UTR_3_PRIME CG18208
2L	15800951	2L_15800951_SNP [dm3] 2L_15800951_SNP [dm6]	G	A	5.155e^-6	0.298	INTERGENIC
X	19158571	X_19158571_SNP [dm3] X_19264538_SNP [dm6]	T	A	5.403e^-6	0.298	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1679278	3L_1679278_SNP [dm3] 3L_1679278_SNP [dm6]	A	C	5.510e^-6	0.298	INTRON CG7991
X	5364846	X_5364846_SNP [dm3] X_5470813_SNP [dm6]	T	C	5.626e^-6	0.298	INTRON SPR
3L	19439891	3L_19439891_SNP [dm3] 3L_19446791_SNP [dm6]	G	A	5.746e^-6	0.298	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	5.885e^-6	0.298	INTRON CG34348
X	19158603	X_19158603_DEL [dm3] X_19264570_DEL [dm6]	TCCTATCTCTGTCT...	T	7.025e^-6	0.313	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	1266966	3R_1266966_SNP [dm3] 3R_5441244_SNP [dm6]	C	T	7.027e^-6	0.313	INTRON CG14669
3L	8606061	3L_8606061_SNP [dm3] 3L_8612961_SNP [dm6]	C	T	7.115e^-6	0.313	INTRON CG6282
X	15452358	X_15452358_SNP [dm3] X_15558325_SNP [dm6]	T	G	7.153e^-6	0.313	INTERGENIC
X	17746469	X_17746469_SNP [dm3] X_17852436_SNP [dm6]	C	T	7.270e^-6	0.313	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9280177	2L_9280177_SNP [dm3] 2L_9280177_SNP [dm6]	A	G	7.451e^-6	0.313	INTRON Ggamma30A
3L	18213458	3L_18213458_SNP [dm3] 3L_18220358_SNP [dm6]	G	T	7.481e^-6	0.313	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	7480202	X_7480202_SNP [dm3] X_7586169_SNP [dm6]	A	G	7.745e^-6	0.313	UPSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
2L	9281645	2L_9281645_INS [dm3] 2L_9281645_INS [dm6]	T	TAAATA	7.787e^-6	0.313	INTRON Ggamma30A
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	7.846e^-6	0.313	INTRON trol
X	20023391	X_20023391_SNP [dm3] X_20129358_SNP [dm6]	T	A	8.242e^-6	0.322	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2834652	3L_2834652_SNP [dm3] 3L_2834652_SNP [dm6]	G	A	8.684e^-6	0.331	INTRON CG43444
2L	5806748	2L_5806748_SNP [dm3] 2L_5806748_SNP [dm6]	A	G	8.908e^-6	0.331	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	11485213	2L_11485213_SNP [dm3] 2L_11485213_SNP [dm6]	A	G	9.007e^-6	0.331	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9280160	2L_9280160_SNP [dm3] 2L_9280160_SNP [dm6]	T	A	9.179e^-6	0.331	INTRON Ggamma30A
2L	11485212	2L_11485212_SNP [dm3] 2L_11485212_SNP [dm6]	C	T	9.617e^-6	0.336	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	9.670e^-6	0.336	INTRON CG8861
X	16129102	X_16129102_SNP [dm3] X_16235069_SNP [dm6]	G	A	1.003e^-5	0.34	INTERGENIC
X	18154327	X_18154327_SNP [dm3] X_18260294_SNP [dm6]	A	G	1.017e^-5	0.34	UPSTREAM CG15059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	7224260	3R_7224260_SNP [dm3] 3R_11398538_SNP [dm6]	C	A	1.079e^-5	0.349	UTR_3_PRIME pros
2R	14072994	2R_14072994_SNP [dm3] 2R_18185489_SNP [dm6]	G	C	1.102e^-5	0.349	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7098803	3R_7098803_SNP [dm3] 3R_11273081_SNP [dm6]	C	A	1.111e^-5	0.349	INTRON CR31386
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	1.118e^-5	0.349	UPSTREAM CG32687 INTERGENIC
2L	8096361	2L_8096361_INS [dm3] 2L_8096361_INS [dm6]	C	CGGTTTTCTTTAAAT...	1.145e^-5	0.349	INTRON Bsg
X	11737371	X_11737371_SNP [dm3] X_11843338_SNP [dm6]	T	C	1.154e^-5	0.349	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19439872	3L_19439872_SNP [dm3] 3L_19446772_SNP [dm6]	G	A	1.217e^-5	0.362	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3800402	3L_3800402_SNP [dm3] 3L_3800402_SNP [dm6]	T	G	1.236e^-5	0.362	NON_SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16095942	X_16095942_SNP [dm3] X_16201909_SNP [dm6]	A	T	1.257e^-5	0.363	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3008258	X_3008258_SNP [dm3] X_3114225_SNP [dm6]	T	A	1.315e^-5	0.369	INTRON kirre
3R	27458721	3R_27458721_SNP [dm3] 3R_31632999_SNP [dm6]	A	G	1.319e^-5	0.369	INTRON kek6
3L	2580216	3L_2580216_SNP [dm3] 3L_2580216_SNP [dm6]	C	T	1.426e^-5	0.388	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17750806	X_17750806_SNP [dm3] X_17856773_SNP [dm6]	G	C	1.429e^-5	0.388	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	17693891	X_17693891_SNP [dm3] X_17799858_SNP [dm6]	A	T	1.448e^-5	0.388	INTRON OdsH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	17683823	3L_17683823_SNP [dm3] 3L_17690723_SNP [dm6]	T	C	1.485e^-5	0.388	INTRON Ccn
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	1.508e^-5	0.388	INTRON alpha-Man-I
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	1.516e^-5	0.388	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18197816	2R_18197816_SNP [dm3] 2R_22310311_SNP [dm6]	G	T	1.530e^-5	0.388	UPSTREAM wdp INTRON wdp
X	17741219	X_17741219_SNP [dm3] X_17847186_SNP [dm6]	C	T	1.583e^-5	0.396	SYNONYMOUS_CODING Ucp4A UTR_3_PRIME Ucp4A DOWNSTREAM CG15814	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	1.619e^-5	0.396	INTRON aret
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	1.624e^-5	0.396	INTRON shep
2L	8887520	2L_8887520_SNP [dm3] 2L_8887520_SNP [dm6]	T	C	1.666e^-5	0.401	EXON CR44415	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2L	14326965	2L_14326965_SNP [dm3] 2L_14326965_SNP [dm6]	C	T	1.747e^-5	0.407	SYNONYMOUS_CODING wb DOWNSTREAM wb
2R	11965490	2R_11965490_SNP [dm3] 2R_16077985_SNP [dm6]	C	T	1.776e^-5	0.407	DOWNSTREAM CR43415 INTERGENIC
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	1.781e^-5	0.407	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	14441430	X_14441430_SNP [dm3] X_14547397_SNP [dm6]	A	T	1.816e^-5	0.407	INTERGENIC
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	1.819e^-5	0.407	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5804599	2L_5804599_SNP [dm3] 2L_5804599_SNP [dm6]	G	C	1.822e^-5	0.407	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23852615	3R_23852615_SNP [dm3] 3R_28026893_SNP [dm6]	C	T	1.903e^-5	0.414	INTRON CG34362
3R	23682129	3R_23682129_SNP [dm3] 3R_27856407_SNP [dm6]	T	G	1.910e^-5	0.414	INTRON CG34353	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	25002934	3R_25002934_SNP [dm3] 3R_29177212_SNP [dm6]	C	A	1.919e^-5	0.414	INTRON CG14509
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	2.054e^-5	0.435	INTRON Pkcdelta
2R	16086048	2R_16086048_SNP [dm3] 2R_20198543_SNP [dm6]	G	T	2.089e^-5	0.435	INTERGENIC
3R	16175110	3R_16175110_SNP [dm3] 3R_20349388_SNP [dm6]	C	T	2.095e^-5	0.435	INTERGENIC
3R	4793654	3R_4793654_SNP [dm3] 3R_8967932_SNP [dm6]	C	A	2.111e^-5	0.435	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18444670	3L_18444670_SNP [dm3] 3L_18451570_SNP [dm6]	G	A	2.153e^-5	0.439	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	7100702	3R_7100702_SNP [dm3] 3R_11274980_SNP [dm6]	C	T	2.181e^-5	0.44	INTRON CR31386
3R	27232351	3R_27232351_SNP [dm3] 3R_31406629_SNP [dm6]	G	A	2.248e^-5	0.443	INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	27081378	3R_27081378_SNP [dm3] 3R_31255656_SNP [dm6]	C	A	2.263e^-5	0.443	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12697709	3R_12697709_SNP [dm3] 3R_16871987_SNP [dm6]	A	C	2.279e^-5	0.443	INTRON iab-8	TF binding site mE1_TFBS_cad
3R	16410331	3R_16410331_SNP [dm3] 3R_20584609_SNP [dm6]	G	A	2.291e^-5	0.443	INTRON CG16953
3R	5749736	3R_5749736_SNP [dm3] 3R_9924014_SNP [dm6]	G	T	2.354e^-5	0.451	INTRON Glut4EF
2R	14073082	2R_14073082_SNP [dm3] 2R_18185577_SNP [dm6]	G	A	2.385e^-5	0.452	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13977559	X_13977559_SNP [dm3] X_14083526_SNP [dm6]	T	A	2.506e^-5	0.463	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	2.508e^-5	0.463	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3L	18444671	3L_18444671_SNP [dm3] 3L_18451571_SNP [dm6]	T	C	2.517e^-5	0.463	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5749737	3R_5749737_SNP [dm3] 3R_9924015_SNP [dm6]	T	A	2.552e^-5	0.464	INTRON Glut4EF
X	8554897	X_8554897_SNP [dm3] X_8660864_SNP [dm6]	T	A	2.571e^-5	0.464	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	2.649e^-5	0.473	INTERGENIC
3L	2391181	3L_2391181_SNP [dm3] 3L_2391181_SNP [dm6]	T	A	2.755e^-5	0.474	UPSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	15327837	X_15327837_SNP [dm3] X_15433804_SNP [dm6]	C	G	2.792e^-5	0.474	INTRON Cngl
2L	9416993	2L_9416993_SNP [dm3] 2L_9416993_SNP [dm6]	T	A	2.828e^-5	0.474	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19156906	X_19156906_SNP [dm3] X_19262873_SNP [dm6]	T	A	2.842e^-5	0.474	INTRON Vav	TF binding site BDTNP1_TFBS_dl
3L	4446730	3L_4446730_SNP [dm3] 3L_4446730_SNP [dm6]	T	C	2.860e^-5	0.474	UPSTREAM CR45739 INTRON CG12607
3R	27245947	3R_27245947_SNP [dm3] 3R_31420225_SNP [dm6]	A	G	2.890e^-5	0.474	INTRON Gprk2
3L	18460729	3L_18460729_SNP [dm3] 3L_18467629_SNP [dm6]	C	A	2.956e^-5	0.474	INTERGENIC
2L	2182252	2L_2182252_SNP [dm3] 2L_2182252_SNP [dm6]	C	T	2.967e^-5	0.474	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17973589	2L_17973589_SNP [dm3] 2L_17973589_SNP [dm6]	G	C	2.972e^-5	0.474	UTR_3_PRIME CG5674 INTRON btv
3L	9348973	3L_9348973_SNP [dm3] 3L_9355873_SNP [dm6]	A	T	2.975e^-5	0.474	DOWNSTREAM CG32040 INTRON UGP
3L	18473922	3L_18473922_SNP [dm3] 3L_18480822_SNP [dm6]	A	T	2.978e^-5	0.474	INTERGENIC
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	2.996e^-5	0.474	INTRON CG4829
X	12646171	X_12646171_SNP [dm3] X_12752138_SNP [dm6]	C	T	3.021e^-5	0.474	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9812088	2L_9812088_SNP [dm3] 2L_9812088_SNP [dm6]	A	C	3.045e^-5	0.474	INTRON nAChRalpha6
2R	18836445	2R_18836445_SNP [dm3] 2R_22948922_SNP [dm6]	G	T	3.088e^-5	0.474	INTERGENIC
2L	15317157	2L_15317157_SNP [dm3] 2L_15317157_SNP [dm6]	G	A	3.093e^-5	0.474	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	24085950	3R_24085950_SNP [dm3] 3R_28260228_SNP [dm6]	C	A	3.203e^-5	0.474	INTERGENIC
2L	930406	2L_930406_SNP [dm3] 2L_930406_SNP [dm6]	T	C	3.227e^-5	0.474	SYNONYMOUS_CODING CG4341 INTRON CG4341
2L	8304209	2L_8304209_SNP [dm3] 2L_8304209_SNP [dm6]	A	G	3.248e^-5	0.474	SYNONYMOUS_CODING Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18513015	2R_18513015_SNP [dm3] 2R_22625510_SNP [dm6]	C	T	3.259e^-5	0.474	INTRON CG33143
2L	9415587	2L_9415587_SNP [dm3] 2L_9415587_SNP [dm6]	T	A	3.285e^-5	0.474	UPSTREAM Shawl INTERGENIC
2L	3504474	2L_3504474_DEL [dm3] 2L_3504474_DEL [dm6]	TC	T	3.287e^-5	0.474	UTR_5_PRIME tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16162926	2R_16162926_SNP [dm3] 2R_20275421_SNP [dm6]	C	A	3.340e^-5	0.474	SYNONYMOUS_CODING CG11788 UPSTREAM CG10444 DOWNSTREAM CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1291319	3R_1291319_SNP [dm3] 3R_5465597_SNP [dm6]	C	A	3.345e^-5	0.474	UPSTREAM PEK DOWNSTREAM RpL35A INTERGENIC
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	3.351e^-5	0.474	INTERGENIC
2L	1030565	2L_1030565_SNP [dm3] 2L_1030565_SNP [dm6]	G	A	3.355e^-5	0.474	INTRON IA-2
X	19428795	X_19428795_SNP [dm3] X_19534762_SNP [dm6]	T	G	3.390e^-5	0.474	INTRON CG32532	TF binding site mE1_TFBS_chinmo
X	19297289	X_19297289_SNP [dm3] X_19403256_SNP [dm6]	G	A	3.460e^-5	0.474	INTRON kek5
3R	23791139	3R_23791139_SNP [dm3] 3R_27965417_SNP [dm6]	C	T	3.463e^-5	0.474	SYNONYMOUS_CODING CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18449758	3L_18449758_SNP [dm3] 3L_18456658_SNP [dm6]	T	A	3.489e^-5	0.474	DOWNSTREAM CR44671 EXON CR44670
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	3.507e^-5	0.474	INTRON shep
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	3.533e^-5	0.474	INTRON CG43444
2R	5259817	2R_5259817_SNP [dm3] 2R_9372312_SNP [dm6]	G	T	3.546e^-5	0.474	SPLICE_SITE_REGION CG13954 INTRON CG13954	TF binding site mE1_TFBS_chinmo
3R	13723550	3R_13723550_INS [dm3] 3R_17897828_INS [dm6]	G	GGA	3.605e^-5	0.474	INTRON Rim
X	7489936	X_7489936_SNP [dm3] X_7595903_SNP [dm6]	G	A	3.669e^-5	0.474	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
3L	8609287	3L_8609287_SNP [dm3] 3L_8616187_SNP [dm6]	G	A	3.718e^-5	0.474	UTR_3_PRIME CG6282
3R	12678228	3R_12678228_SNP [dm3] 3R_16852506_SNP [dm6]	G	C	3.749e^-5	0.474	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5817267	3R_5817267_SNP [dm3] 3R_9991545_SNP [dm6]	T	C	3.768e^-5	0.474	UTR_3_PRIME Glut4EF
3R	5817268	3R_5817268_SNP [dm3] 3R_9991546_SNP [dm6]	A	T	3.768e^-5	0.474	UTR_3_PRIME Glut4EF
3L	2800477	3L_2800477_SNP [dm3] 3L_2800477_SNP [dm6]	G	A	3.777e^-5	0.474	INTRON CG43444	TF binding site mE1_TFBS_inv
2L	8096349	2L_8096349_DEL [dm3] 2L_8096349_DEL [dm6]	CCACAGGAGA	T	3.795e^-5	0.474	INTRON Bsg
2L	346273	2L_346273_SNP [dm3] 2L_346273_SNP [dm6]	T	A	3.799e^-5	0.474	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	3.806e^-5	0.474	INTRON sff
2L	7713318	2L_7713318_SNP [dm3] 2L_7713318_SNP [dm6]	C	T	3.861e^-5	0.474	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
2L	13533223	2L_13533223_INS [dm3] 2L_13533223_INS [dm6]	A	AGTA	3.921e^-5	0.474	DOWNSTREAM CG33644 INTRON B4 & 1 other
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	3.925e^-5	0.474	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18438479	2R_18438479_SNP [dm3] 2R_22550974_SNP [dm6]	C	T	3.943e^-5	0.474	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10469521	X_10469521_SNP [dm3] X_10575488_SNP [dm6]	A	G	3.993e^-5	0.474	SYNONYMOUS_CODING spri
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	4.007e^-5	0.474	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
3L	21526995	3L_21526995_SNP [dm3] 3L_21533895_SNP [dm6]	C	T	4.045e^-5	0.474	UPSTREAM ppk5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	2837572	X_2837572_SNP [dm3] X_2943539_SNP [dm6]	G	A	4.103e^-5	0.474	INTRON kirre & 1 other
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	4.111e^-5	0.474	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
X	11876380	X_11876380_SNP [dm3] X_11982347_SNP [dm6]	T	A	4.115e^-5	0.474	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5995489	3R_5995489_SNP [dm3] 3R_10169767_SNP [dm6]	G	T	4.124e^-5	0.474	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	6406966	X_6406966_SNP [dm3] X_6512933_SNP [dm6]	G	A	4.142e^-5	0.474	INTRON CG42340
3L	19824527	3L_19824527_SNP [dm3] 3L_19831427_SNP [dm6]	T	G	4.157e^-5	0.474	UTR_3_PRIME trc DOWNSTREAM Deaf1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16553930	3L_16553930_SNP [dm3] 3L_16560830_SNP [dm6]	C	T	4.251e^-5	0.474	INTERGENIC
3L	2945764	3L_2945764_SNP [dm3] 3L_2945764_SNP [dm6]	C	G	4.252e^-5	0.474	UTR_3_PRIME Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	4.269e^-5	0.474	NON_SYNONYMOUS_CODING CG42713
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	4.344e^-5	0.474	INTRON hth
3L	12308561	3L_12308561_SNP [dm3] 3L_12315461_SNP [dm6]	A	C	4.375e^-5	0.474	INTERGENIC
2R	14073081	2R_14073081_SNP [dm3] 2R_18185576_SNP [dm6]	T	C	4.413e^-5	0.474	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12753624	X_12753624_SNP [dm3] X_12859591_SNP [dm6]	G	A	4.424e^-5	0.474	INTRON Pde9
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	4.437e^-5	0.474	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	13072190	3L_13072190_SNP [dm3] 3L_13079090_SNP [dm6]	A	T	4.445e^-5	0.474	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23847084	3R_23847084_SNP [dm3] 3R_28021362_SNP [dm6]	T	A	4.476e^-5	0.474	INTERGENIC
2R	17139980	2R_17139980_SNP [dm3] 2R_21252475_SNP [dm6]	G	A	4.490e^-5	0.474	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	17973665	2L_17973665_SNP [dm3] 2L_17973665_SNP [dm6]	T	C	4.541e^-5	0.474	UTR_3_PRIME CG5674 INTRON btv	transposable element FlyBase
X	10635080	X_10635080_SNP [dm3] X_10741047_SNP [dm6]	C	T	4.561e^-5	0.474	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	4.566e^-5	0.474	INTERGENIC
3R	5832316	3R_5832316_SNP [dm3] 3R_10006594_SNP [dm6]	A	G	4.590e^-5	0.474	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad
X	9622010	X_9622010_SNP [dm3] X_9727977_SNP [dm6]	T	G	4.596e^-5	0.474	EXON CR43498	TF binding site BDTNP1_TFBS_dl
3R	2102752	3R_2102752_SNP [dm3] 3R_6277030_SNP [dm6]	G	A	4.607e^-5	0.474	INTERGENIC
2L	5805181	2L_5805181_SNP [dm3] 2L_5805181_SNP [dm6]	G	T	4.644e^-5	0.474	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18976707	2R_18976707_SNP [dm3] 2R_23089184_SNP [dm6]	C	T	4.651e^-5	0.474	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18027276	2L_18027276_SNP [dm3] 2L_18027276_SNP [dm6]	A	C	4.655e^-5	0.474	INTRON rdo
3L	14138191	3L_14138191_SNP [dm3] 3L_14145091_SNP [dm6]	A	T	4.705e^-5	0.474	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	4.758e^-5	0.474	INTERGENIC
3L	21527855	3L_21527855_SNP [dm3] 3L_21534755_SNP [dm6]	C	T	4.758e^-5	0.474	SYNONYMOUS_CODING ppk5	TF binding site mE1_TFBS_inv
3L	21532576	3L_21532576_SNP [dm3] 3L_21539476_SNP [dm6]	T	G	4.758e^-5	0.474	UPSTREAM VhaM9.7-b & 1 other DOWNSTREAM Rpn10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21547143	3L_21547143_SNP [dm3] 3L_21554043_SNP [dm6]	C	T	4.758e^-5	0.474	NON_SYNONYMOUS_CODING Wnk
X	7489471	X_7489471_INS [dm3] X_7595438_INS [dm6]	TT	AAA	4.760e^-5	0.474	INTERGENIC	regulatory region REDfly_CRMs
2L	14535419	2L_14535419_SNP [dm3] 2L_14535419_SNP [dm6]	C	T	4.773e^-5	0.474	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18460323	3L_18460323_SNP [dm3] 3L_18467223_SNP [dm6]	T	C	4.792e^-5	0.474	INTERGENIC
X	12239910	X_12239910_SNP [dm3] X_12345877_SNP [dm6]	C	T	4.802e^-5	0.474	INTERGENIC
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	4.824e^-5	0.474	UPSTREAM CG5623 INTERGENIC
2L	11025008	2L_11025008_DEL [dm3] 2L_11025008_DEL [dm6]	CTAATTCCGTTTTTCCCAAC...	C	4.900e^-5	0.476	INTRON Samuel
3L	9897640	3L_9897640_INS [dm3] 3L_9904540_INS [dm6]	T	TA	4.908e^-5	0.476	INTERGENIC
X	22326665	X_22326665_SNP [dm3] X_22924829_SNP [dm6]	G	C	4.926e^-5	0.476	INTERGENIC	transposable element FlyBase
2L	10461467	2L_10461467_SNP [dm3] 2L_10461467_SNP [dm6]	C	T	4.950e^-5	0.476	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	4.990e^-5	0.477	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17747907	X_17747907_SNP [dm3] X_17853874_SNP [dm6]	T	C	5.019e^-5	0.477	NON_SYNONYMOUS_CODING CG32557	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11485199	2L_11485199_SNP [dm3] 2L_11485199_SNP [dm6]	T	C	5.039e^-5	0.477	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1196836	3L_1196836_INS [dm3] 3L_1196836_INS [dm6]	T	TCCAGAT	5.105e^-5	0.479	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2210499	3R_2210499_SNP [dm3] 3R_6384777_SNP [dm6]	A	G	5.155e^-5	0.479	INTRON godzilla
2L	4488587	2L_4488587_SNP [dm3] 2L_4488587_SNP [dm6]	A	C	5.177e^-5	0.479	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23847041	3R_23847041_SNP [dm3] 3R_28021319_SNP [dm6]	G	C	5.186e^-5	0.479	INTERGENIC
3L	17270745	3L_17270745_SNP [dm3] 3L_17277645_SNP [dm6]	C	T	5.214e^-5	0.479	INTERGENIC
2R	10713719	2R_10713719_SNP [dm3] 2R_14826214_SNP [dm6]	T	C	5.219e^-5	0.479	INTERGENIC
2L	2028644	2L_2028644_SNP [dm3] 2L_2028644_SNP [dm6]	C	T	5.231e^-5	0.479	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad
2L	15340080	2L_15340080_SNP [dm3] 2L_15340080_SNP [dm6]	T	A	5.372e^-5	0.489	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	5.403e^-5	0.49	INTRON Ggamma30A
3R	18542590	3R_18542590_SNP [dm3] 3R_22716868_SNP [dm6]	T	A	5.542e^-5	0.499	INTRON wge	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17950492	2R_17950492_SNP [dm3] 2R_22062987_SNP [dm6]	G	A	5.572e^-5	0.499	INTRON Snp
X	14441427	X_14441427_SNP [dm3] X_14547394_SNP [dm6]	T	A	5.615e^-5	0.499	INTERGENIC
X	10274015	X_10274015_SNP [dm3] X_10379982_SNP [dm6]	T	C	5.672e^-5	0.499	SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	14458565	3R_14458565_SNP [dm3] 3R_18632843_SNP [dm6]	A	T	5.742e^-5	0.499	INTRON qin & 1 other
3L	8463332	3L_8463332_SNP [dm3] 3L_8470232_SNP [dm6]	C	T	5.781e^-5	0.499	INTRON Gug
3R	20540226	3R_20540226_SNP [dm3] 3R_24714504_SNP [dm6]	G	T	5.794e^-5	0.499	UPSTREAM CG13627 INTRON CG13627
2L	2373367	2L_2373367_SNP [dm3] 2L_2373367_SNP [dm6]	C	T	5.797e^-5	0.499	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	5.808e^-5	0.499	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24767970	3R_24767970_SNP [dm3] 3R_28942248_SNP [dm6]	T	A	5.844e^-5	0.499	INTRON CG14521
X	20458952	X_20458952_INS [dm3] X_20587925_INS [dm6]	A	ATTAATCATCA...	5.881e^-5	0.499	INTERGENIC
3R	12678164	3R_12678164_SNP [dm3] 3R_16852442_SNP [dm6]	G	A	5.910e^-5	0.499	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9486231	X_9486231_SNP [dm3] X_9592198_SNP [dm6]	A	C	5.968e^-5	0.499	INTERGENIC
3L	18447251	3L_18447251_SNP [dm3] 3L_18454151_SNP [dm6]	G	T	5.977e^-5	0.499	INTERGENIC
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	6.030e^-5	0.499	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3848033	3L_3848033_SNP [dm3] 3L_3848033_SNP [dm6]	C	T	6.039e^-5	0.499	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	7063368	2L_7063368_SNP [dm3] 2L_7063368_SNP [dm6]	T	A	6.102e^-5	0.499	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
X	19731853	X_19731853_SNP [dm3] X_19837820_SNP [dm6]	T	C	6.106e^-5	0.499	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19828103	2R_19828103_SNP [dm3] 2R_23940580_SNP [dm6]	T	G	6.114e^-5	0.499	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	7101386	3R_7101386_SNP [dm3] 3R_11275664_SNP [dm6]	C	A	6.148e^-5	0.499	INTRON CR31386
2L	3929748	2L_3929748_SNP [dm3] 2L_3929748_SNP [dm6]	G	T	6.178e^-5	0.499	INTRON fred
3L	4520171	3L_4520171_SNP [dm3] 3L_4520171_SNP [dm6]	G	C	6.181e^-5	0.499	INTRON Tie
2L	15319276	2L_15319276_SNP [dm3] 2L_15319276_SNP [dm6]	G	A	6.195e^-5	0.499	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20511941	2L_20511941_SNP [dm3] 2L_20511941_SNP [dm6]	A	T	6.207e^-5	0.499	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	12677249	3R_12677249_SNP [dm3] 3R_16851527_SNP [dm6]	C	A	6.211e^-5	0.499	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	3929737	2L_3929737_SNP [dm3] 2L_3929737_SNP [dm6]	A	G	6.212e^-5	0.499	INTRON fred
3L	9652468	3L_9652468_SNP [dm3] 3L_9659368_SNP [dm6]	T	G	6.222e^-5	0.499	UTR_3_PRIME CG33696 INTRON fry
3L	18460309	3L_18460309_SNP [dm3] 3L_18467209_SNP [dm6]	A	G	6.356e^-5	0.506	INTERGENIC
X	19159390	X_19159390_SNP [dm3] X_19265357_SNP [dm6]	T	C	6.440e^-5	0.506	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	292156	2L_292156_SNP [dm3] 2L_292156_SNP [dm6]	C	T	6.445e^-5	0.506	UPSTREAM CG11562 & 1 other DOWNSTREAM U2af38 INTERGENIC
3L	3881124	3L_3881124_SNP [dm3] 3L_3881124_SNP [dm6]	A	G	6.448e^-5	0.506	INTERGENIC
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	6.481e^-5	0.506	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	6.551e^-5	0.506	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4485604	3L_4485604_SNP [dm3] 3L_4485604_SNP [dm6]	G	A	6.573e^-5	0.506	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3937233	2L_3937233_SNP [dm3] 2L_3937233_SNP [dm6]	A	G	6.611e^-5	0.506	INTRON fred
3R	7224275	3R_7224275_SNP [dm3] 3R_11398553_SNP [dm6]	C	A	6.624e^-5	0.506	UTR_3_PRIME pros
3L	7002708	3L_7002708_SNP [dm3] 3L_7009608_SNP [dm6]	T	C	6.658e^-5	0.506	INTRON Mp
3L	18447380	3L_18447380_SNP [dm3] 3L_18454280_SNP [dm6]	T	C	6.675e^-5	0.506	INTERGENIC
3L	18447381	3L_18447381_SNP [dm3] 3L_18454281_SNP [dm6]	T	A	6.675e^-5	0.506	INTERGENIC
2R	14357930	2R_14357930_SNP [dm3] 2R_18470425_SNP [dm6]	A	G	6.713e^-5	0.506	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8619729	3L_8619729_SNP [dm3] 3L_8626629_SNP [dm6]	A	C	6.761e^-5	0.506	INTRON Zasp66
3L	3933967	3L_3933967_SNP [dm3] 3L_3933967_SNP [dm6]	A	C	6.762e^-5	0.506	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
3R	27246036	3R_27246036_SNP [dm3] 3R_31420314_SNP [dm6]	T	A	6.776e^-5	0.506	INTRON Gprk2
X	17746504	X_17746504_SNP [dm3] X_17852471_SNP [dm6]	A	G	6.793e^-5	0.506	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	17683975	3L_17683975_SNP [dm3] 3L_17690875_SNP [dm6]	T	C	6.824e^-5	0.506	INTRON Ccn
3R	13057395	3R_13057395_SNP [dm3] 3R_17231673_SNP [dm6]	C	T	6.852e^-5	0.506	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	3951594	3L_3951594_SNP [dm3] 3L_3951594_SNP [dm6]	T	A	6.857e^-5	0.506	INTRON CG14984
X	22136700	X_22136700_SNP [dm3] X_22734864_SNP [dm6]	A	G	6.898e^-5	0.506	INTRON CR44997
3L	18728216	3L_18728216_SNP [dm3] 3L_18735116_SNP [dm6]	C	G	6.929e^-5	0.506	INTERGENIC
3R	4450196	3R_4450196_SNP [dm3] 3R_8624474_SNP [dm6]	C	G	6.929e^-5	0.506	INTRON 5-HT2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18447383	3L_18447383_SNP [dm3] 3L_18454283_SNP [dm6]	T	A	6.991e^-5	0.508	INTERGENIC
2L	3929258	2L_3929258_SNP [dm3] 2L_3929258_SNP [dm6]	G	A	7.009e^-5	0.508	INTRON fred
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	7.101e^-5	0.511	INTRON dnc
3R	7178120	3R_7178120_SNP [dm3] 3R_11352398_SNP [dm6]	G	C	7.132e^-5	0.511	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18452378	3L_18452378_SNP [dm3] 3L_18459278_SNP [dm6]	C	G	7.133e^-5	0.511	DOWNSTREAM CG32196 INTERGENIC
X	19764020	X_19764020_SNP [dm3] X_19869987_SNP [dm6]	A	G	7.231e^-5	0.512	SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12677977	3R_12677977_SNP [dm3] 3R_16852255_SNP [dm6]	A	C	7.272e^-5	0.512	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3838594	2L_3838594_SNP [dm3] 2L_3838594_SNP [dm6]	A	G	7.281e^-5	0.512	UTR_3_PRIME slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14457149	3R_14457149_SNP [dm3] 3R_18631427_SNP [dm6]	C	A	7.286e^-5	0.512	INTRON qin & 1 other
3R	1264747	3R_1264747_SNP [dm3] 3R_5439025_SNP [dm6]	G	A	7.389e^-5	0.512	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	22136664	X_22136664_SNP [dm3] X_22734828_SNP [dm6]	G	T	7.403e^-5	0.512	INTRON CR44997
3L	9550581	3L_9550581_SNP [dm3] 3L_9557481_SNP [dm6]	G	T	7.416e^-5	0.512	INTRON CG42673
2L	5702877	2L_5702877_SNP [dm3] 2L_5702877_SNP [dm6]	T	C	7.423e^-5	0.512	INTERGENIC
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	7.434e^-5	0.512	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	7227149	3R_7227149_SNP [dm3] 3R_11401427_SNP [dm6]	C	T	7.458e^-5	0.512	UTR_3_PRIME pros
2L	4573939	2L_4573939_SNP [dm3] 2L_4573939_SNP [dm6]	T	C	7.465e^-5	0.512	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3260896	3L_3260896_SNP [dm3] 3L_3260896_SNP [dm6]	C	G	7.481e^-5	0.512	INTRON ckd
3R	4978763	3R_4978763_DEL [dm3] 3R_9153041_DEL [dm6]	GCATTCGATGGG...	G	7.504e^-5	0.512	INTRON pum
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	7.567e^-5	0.514	INTRON RapGAP1
X	17748123	X_17748123_SNP [dm3] X_17854090_SNP [dm6]	G	A	7.625e^-5	0.514	INTRON CG32557	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	10296719	X_10296719_SNP [dm3] X_10402686_SNP [dm6]	A	G	7.649e^-5	0.514	INTRON flw
2L	7045431	2L_7045431_SNP [dm3] 2L_7045431_SNP [dm6]	T	C	7.673e^-5	0.514	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12692394	3R_12692394_SNP [dm3] 3R_16866672_SNP [dm6]	A	T	7.692e^-5	0.514	INTRON iab-8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9889000	3L_9889000_DEL [dm3] 3L_9895900_DEL [dm6]	CAC	C	7.724e^-5	0.514	INTRON CG6707
2R	10647322	2R_10647322_SNP [dm3] 2R_14759817_SNP [dm6]	T	G	7.767e^-5	0.514	UTR_3_PRIME Spred UPSTREAM CG12857
2L	5437281	2L_5437281_SNP [dm3] 2L_5437281_SNP [dm6]	G	A	7.799e^-5	0.514	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2L	5437285	2L_5437285_SNP [dm3] 2L_5437285_SNP [dm6]	A	T	7.799e^-5	0.514	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	7.834e^-5	0.514	INTRON Ggamma30A
2L	3720667	2L_3720667_SNP [dm3] 2L_3720667_SNP [dm6]	T	C	7.920e^-5	0.514	UPSTREAM Shaw INTRON Shaw
2L	17972979	2L_17972979_SNP [dm3] 2L_17972979_SNP [dm6]	T	G	7.944e^-5	0.514	SYNONYMOUS_CODING CG5674 UTR_3_PRIME CG5674 INTRON btv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2122520	3L_2122520_SNP [dm3] 3L_2122520_SNP [dm6]	T	A	7.968e^-5	0.514	DOWNSTREAM zormin INTRON zormin
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	8.042e^-5	0.514	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8888978	2L_8888978_SNP [dm3] 2L_8888978_SNP [dm6]	A	G	8.083e^-5	0.514	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	8.104e^-5	0.514	UPSTREAM CG5623 INTERGENIC
2L	5805482	2L_5805482_SNP [dm3] 2L_5805482_SNP [dm6]	C	T	8.117e^-5	0.514	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	4486048	3L_4486048_SNP [dm3] 3L_4486048_SNP [dm6]	A	G	8.126e^-5	0.514	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14300506	X_14300506_DEL [dm3] X_14406473_DEL [dm6]	AT	A	8.166e^-5	0.514	INTRON dpr8
2R	8386551	2R_8386551_SNP [dm3] 2R_12499046_SNP [dm6]	T	C	8.215e^-5	0.514	INTRON fdl & 1 other
X	7454686	X_7454686_SNP [dm3] X_7560653_SNP [dm6]	A	G	8.253e^-5	0.514	INTERGENIC
3R	14723482	3R_14723482_SNP [dm3] 3R_18897760_SNP [dm6]	G	A	8.260e^-5	0.514	UPSTREAM CG14297 INTERGENIC
X	13977568	X_13977568_SNP [dm3] X_14083535_SNP [dm6]	G	T	8.337e^-5	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2834651	3L_2834651_SNP [dm3] 3L_2834651_SNP [dm6]	G	C	8.342e^-5	0.514	INTRON CG43444
X	12286914	X_12286914_SNP [dm3] X_12392881_SNP [dm6]	G	A	8.391e^-5	0.514	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19021480	X_19021480_SNP [dm3] X_19127447_SNP [dm6]	A	C	8.401e^-5	0.514	UPSTREAM tgy INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12567007	3R_12567007_SNP [dm3] 3R_16741285_SNP [dm6]	T	A	8.409e^-5	0.514	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7559546	3L_7559546_SNP [dm3] 3L_7566446_SNP [dm6]	C	A	8.410e^-5	0.514	STOP_GAINED frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7559547	3L_7559547_SNP [dm3] 3L_7566447_SNP [dm6]	A	C	8.410e^-5	0.514	SYNONYMOUS_CODING frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4061636	2L_4061636_SNP [dm3] 2L_4061636_SNP [dm6]	G	A	8.461e^-5	0.514	INTRON ed
3R	22278244	3R_22278244_SNP [dm3] 3R_26452522_SNP [dm6]	A	T	8.472e^-5	0.514	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
3L	10794922	3L_10794922_INS [dm3] 3L_10801822_INS [dm6]	C	CATCGTACGGTCCTCCCAGT...	8.498e^-5	0.514
3L	8615343	3L_8615343_SNP [dm3] 3L_8622243_SNP [dm6]	G	A	8.537e^-5	0.514	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
2L	5805164	2L_5805164_SNP [dm3] 2L_5805164_SNP [dm6]	C	A	8.552e^-5	0.514	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	9751468	3L_9751468_SNP [dm3] 3L_9758368_SNP [dm6]	T	G	8.563e^-5	0.514	INTRON CG42268
X	15711445	X_15711445_SNP [dm3] X_15817412_SNP [dm6]	G	A	8.650e^-5	0.514	UPSTREAM sd INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
3R	16233661	3R_16233661_SNP [dm3] 3R_20407939_SNP [dm6]	A	G	8.669e^-5	0.514	UPSTREAM CG10881 & 1 other INTRON Gfrl
3L	8605413	3L_8605413_SNP [dm3] 3L_8612313_SNP [dm6]	C	G	8.675e^-5	0.514	INTRON CG6282
X	3466507	X_3466507_SNP [dm3] X_3572474_SNP [dm6]	A	G	8.706e^-5	0.514	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8	TF binding site mE1_TFBS_sens
3L	1806698	3L_1806698_SNP [dm3] 3L_1806698_SNP [dm6]	G	T	8.707e^-5	0.514	UTR_3_PRIME CG42676 UPSTREAM CR45687 EXON CR45686
3R	23776488	3R_23776488_SNP [dm3] 3R_27950766_SNP [dm6]	T	A	8.717e^-5	0.514	INTRON Gp93
X	9856100	X_9856100_SNP [dm3] X_9962067_SNP [dm6]	A	G	8.755e^-5	0.514	INTERGENIC
3R	20402050	3R_20402050_SNP [dm3] 3R_24576328_SNP [dm6]	A	G	8.768e^-5	0.514	INTRON CG13624
2L	4462628	2L_4462628_SNP [dm3] 2L_4462628_SNP [dm6]	T	G	8.779e^-5	0.514	SYNONYMOUS_CODING CG15443 UPSTREAM CG15436 DOWNSTREAM CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26923909	3R_26923909_SNP [dm3] 3R_31098187_SNP [dm6]	G	A	8.783e^-5	0.514	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
3R	19369008	3R_19369008_SNP [dm3] 3R_23543286_SNP [dm6]	T	C	8.795e^-5	0.514	INTERGENIC
2R	10276216	2R_10276216_SNP [dm3] 2R_14388711_SNP [dm6]	G	A	8.868e^-5	0.515	INTERGENIC
3L	12833023	3L_12833023_SNP [dm3] 3L_12839923_SNP [dm6]	T	A	8.898e^-5	0.515	INTRON CG10960
3R	20288751	3R_20288751_SNP [dm3] 3R_24463029_SNP [dm6]	C	G	8.898e^-5	0.515	DOWNSTREAM CR45649 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	17683976	3L_17683976_SNP [dm3] 3L_17690876_SNP [dm6]	A	T	8.994e^-5	0.516	INTRON Ccn
2L	5805167	2L_5805167_SNP [dm3] 2L_5805167_SNP [dm6]	G	A	8.998e^-5	0.516	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7088459	3L_7088459_SNP [dm3] 3L_7095359_SNP [dm6]	C	A	9.002e^-5	0.516	UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3414299	3L_3414299_SNP [dm3] 3L_3414299_SNP [dm6]	A	C	9.145e^-5	0.523	INTRON sty
3R	4791052	3R_4791052_SNP [dm3] 3R_8965330_SNP [dm6]	C	T	9.237e^-5	0.523	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17045286	2R_17045286_SNP [dm3] 2R_21157781_SNP [dm6]	T	C	9.254e^-5	0.523	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
3R	10680065	3R_10680065_SNP [dm3] 3R_14854343_SNP [dm6]	A	G	9.257e^-5	0.523	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4564356	2L_4564356_SNP [dm3] 2L_4564356_SNP [dm6]	T	C	9.261e^-5	0.523	INTRON dp	TF binding site mE1_TFBS_cad
3R	7231860	3R_7231860_SNP [dm3] 3R_11406138_SNP [dm6]	A	T	9.292e^-5	0.523	UTR_3_PRIME pros
3L	9751350	3L_9751350_SNP [dm3] 3L_9758250_SNP [dm6]	G	C	9.333e^-5	0.523	INTRON CG42268
3R	16175101	3R_16175101_SNP [dm3] 3R_20349379_SNP [dm6]	T	C	9.339e^-5	0.523	INTERGENIC
3R	12646250	3R_12646250_SNP [dm3] 3R_16820528_SNP [dm6]	G	A	9.375e^-5	0.523	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24105628	3R_24105628_SNP [dm3] 3R_28279906_SNP [dm6]	C	T	9.402e^-5	0.523	INTERGENIC
X	12252201	X_12252201_SNP [dm3] X_12358168_SNP [dm6]	T	G	9.440e^-5	0.524	INTERGENIC
2L	6102211	2L_6102211_SNP [dm3] 2L_6102211_SNP [dm6]	C	G	9.555e^-5	0.526	INTRON stai
2L	17860676	2L_17860676_SNP [dm3] 2L_17860676_SNP [dm6]	G	C	9.598e^-5	0.526	INTRON CadN2
2R	15106793	2R_15106793_SNP [dm3] 2R_19219288_SNP [dm6]	A	G	9.636e^-5	0.526	INTRON hppy
X	5476830	X_5476830_SNP [dm3] X_5582797_SNP [dm6]	T	C	9.642e^-5	0.526	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15431449	2R_15431449_SNP [dm3] 2R_19543944_SNP [dm6]	C	G	9.681e^-5	0.526	INTRON sm
2L	20549199	2L_20549199_SNP [dm3] 2L_20549199_SNP [dm6]	A	G	9.695e^-5	0.526	INTERGENIC
2L	5437302	2L_5437302_SNP [dm3] 2L_5437302_SNP [dm6]	C	A	9.719e^-5	0.526	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2L	12319149	2L_12319149_SNP [dm3] 2L_12319149_SNP [dm6]	C	T	9.725e^-5	0.526	INTERGENIC
2L	9812092	2L_9812092_SNP [dm3] 2L_9812092_SNP [dm6]	C	G	9.741e^-5	0.526	INTRON nAChRalpha6
3R	13667644	3R_13667644_SNP [dm3] 3R_17841922_SNP [dm6]	G	A	9.832e^-5	0.526	INTRON tinc
2R	14732687	2R_14732687_SNP [dm3] 2R_18845182_SNP [dm6]	A	G	9.845e^-5	0.526	SYNONYMOUS_CODING CG15099
3L	2459924	3L_2459924_SNP [dm3] 3L_2459924_SNP [dm6]	C	T	9.846e^-5	0.526	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
2L	5860172	2L_5860172_SNP [dm3] 2L_5860172_SNP [dm6]	C	A	9.854e^-5	0.526	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
3L	18453521	3L_18453521_SNP [dm3] 3L_18460421_SNP [dm6]	A	T	9.868e^-5	0.526	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	9.986e^-5	0.53	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	5129418	2L_5129418_SNP [dm3] 2L_5129418_SNP [dm6]	C	T	1.001e^-4	0.53	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13518399	2L_13518399_SNP [dm3] 2L_13518399_SNP [dm6]	A	G	1.007e^-4	0.531	INTRON B4
2L	4709951	2L_4709951_SNP [dm3] 2L_4709951_SNP [dm6]	C	T	1.008e^-4	0.531	INTRON CG34351	TF binding site mE1_TFBS_chinmo
2R	17045275	2R_17045275_SNP [dm3] 2R_21157770_SNP [dm6]	A	G	1.013e^-4	0.532	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2L	5860118	2L_5860118_SNP [dm3] 2L_5860118_SNP [dm6]	A	G	1.018e^-4	0.533	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	1.022e^-4	0.534	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16769780	3L_16769780_SNP [dm3] 3L_16776680_SNP [dm6]	T	G	1.029e^-4	0.536	UTR_3_PRIME Nrt & 1 other DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9949490	3L_9949490_SNP [dm3] 3L_9956390_SNP [dm6]	C	T	1.038e^-4	0.537	INTRON CG34356
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	1.048e^-4	0.537	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	1.053e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	9410112	X_9410112_INS [dm3] X_9516079_INS [dm6]	A	AC	1.053e^-4	0.537	INTRON CG32700
3L	8614845	3L_8614845_SNP [dm3] 3L_8621745_SNP [dm6]	C	T	1.058e^-4	0.537	DOWNSTREAM GAPsec INTRON S-Lap2
3L	4484210	3L_4484210_SNP [dm3] 3L_4484210_SNP [dm6]	C	T	1.060e^-4	0.537	SYNONYMOUS_CODING CG11350 DOWNSTREAM CG13722
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	1.062e^-4	0.537	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13557293	3R_13557293_SNP [dm3] 3R_17731571_SNP [dm6]	C	T	1.065e^-4	0.537	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16237684	2R_16237684_SNP [dm3] 2R_20350179_SNP [dm6]	C	G	1.069e^-4	0.537	INTERGENIC
3R	12677497	3R_12677497_SNP [dm3] 3R_16851775_SNP [dm6]	C	A	1.073e^-4	0.537	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	5805475	2L_5805475_SNP [dm3] 2L_5805475_SNP [dm6]	C	T	1.074e^-4	0.537	UTR_5_PRIME CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	15801289	2L_15801289_SNP [dm3] 2L_15801289_SNP [dm6]	A	T	1.075e^-4	0.537	INTERGENIC
2L	17860681	2L_17860681_SNP [dm3] 2L_17860681_SNP [dm6]	T	A	1.076e^-4	0.537	INTRON CadN2
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	1.076e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	1.076e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11625318	3L_11625318_SNP [dm3] 3L_11632218_SNP [dm6]	A	G	1.081e^-4	0.537	DOWNSTREAM CR45158 INTRON CG32091
3R	4799533	3R_4799533_SNP [dm3] 3R_8973811_SNP [dm6]	G	T	1.085e^-4	0.537	INTERGENIC
2L	274600	2L_274600_SNP [dm3] 2L_274600_SNP [dm6]	G	T	1.093e^-4	0.537	NON_SYNONYMOUS_CODING CG11555 UPSTREAM mbm DOWNSTREAM CG17078	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	14535359	2L_14535359_SNP [dm3] 2L_14535359_SNP [dm6]	C	A	1.094e^-4	0.537	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11994896	X_11994896_INS [dm3] X_12100863_INS [dm6]	T	TCAGAT	1.094e^-4	0.537	INTRON CR43960 & 1 other
3L	9896979	3L_9896979_SNP [dm3] 3L_9903879_SNP [dm6]	A	C	1.095e^-4	0.537	DOWNSTREAM nudE INTERGENIC
X	18601221	X_18601221_SNP [dm3] X_18707188_SNP [dm6]	C	T	1.098e^-4	0.537	DOWNSTREAM CCKLR-17D1 INTERGENIC	TF binding site mE1_TFBS_sens
3L	2510391	3L_2510391_SNP [dm3] 3L_2510391_SNP [dm6]	G	T	1.104e^-4	0.537	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo
3L	16174938	3L_16174938_SNP [dm3] 3L_16181838_SNP [dm6]	A	T	1.116e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1278435	3L_1278435_SNP [dm3] 3L_1278435_SNP [dm6]	C	T	1.117e^-4	0.537	INTRON CG32333
3L	4526321	3L_4526321_SNP [dm3] 3L_4526321_SNP [dm6]	T	G	1.119e^-4	0.537	INTRON Tie
X	1868587	X_1868587_SNP [dm3] X_1974554_SNP [dm6]	G	T	1.120e^-4	0.537	INTRON Hr4
2L	9187301	2L_9187301_SNP [dm3] 2L_9187301_SNP [dm6]	A	C	1.121e^-4	0.537	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23585969	3R_23585969_SNP [dm3] 3R_27760247_SNP [dm6]	A	G	1.125e^-4	0.537	INTERGENIC
X	13019956	X_13019956_INS [dm3] X_13125923_INS [dm6]	C	ATCACACGA	1.126e^-4	0.537	INTRON CG32638
3R	24088645	3R_24088645_SNP [dm3] 3R_28262923_SNP [dm6]	C	T	1.136e^-4	0.537	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2L	10270865	2L_10270865_SNP [dm3] 2L_10270865_SNP [dm6]	G	C	1.138e^-4	0.537	SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3142279	3L_3142279_SNP [dm3] 3L_3142279_SNP [dm6]	T	C	1.138e^-4	0.537	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14581782	3L_14581782_SNP [dm3] 3L_14588682_SNP [dm6]	G	T	1.148e^-4	0.537	INTRON HGTX
3R	4791827	3R_4791827_INS [dm3] 3R_8966105_INS [dm6]	T	TACA	1.148e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12949859	3R_12949859_SNP [dm3] 3R_17124137_SNP [dm6]	T	A	1.149e^-4	0.537	UPSTREAM CG45079 INTRON cher
2L	1714758	2L_1714758_SNP [dm3] 2L_1714758_SNP [dm6]	C	G	1.154e^-4	0.537	INTRON frtz	TF binding site mE1_TFBS_chinmo
3L	12305032	3L_12305032_SNP [dm3] 3L_12311932_SNP [dm6]	T	A	1.154e^-4	0.537	UTR_3_PRIME CG44355
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	1.155e^-4	0.537	UTR_3_PRIME sfl
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	1.168e^-4	0.537	INTRON Ggamma30A
2L	618570	2L_618570_SNP [dm3] 2L_618570_SNP [dm6]	T	A	1.169e^-4	0.537	INTERGENIC
X	7489464	X_7489464_SNP [dm3] X_7595431_SNP [dm6]	A	G	1.170e^-4	0.537	INTERGENIC	regulatory region REDfly_CRMs
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	1.170e^-4	0.537	INTRON Pde9
2L	8880102	2L_8880102_SNP [dm3] 2L_8880102_SNP [dm6]	C	G	1.182e^-4	0.537	INTERGENIC
2L	8880103	2L_8880103_DEL [dm3] 2L_8880103_DEL [dm6]	GTCTAAGACTG...	G	1.182e^-4	0.537	INTERGENIC
2L	4655453	2L_4655453_SNP [dm3] 2L_4655453_SNP [dm6]	T	C	1.182e^-4	0.537	INTERGENIC
3L	17683970	3L_17683970_DEL [dm3] 3L_17690870_DEL [dm6]	AGTG	A	1.186e^-4	0.537	INTRON Ccn
3R	24108202	3R_24108202_SNP [dm3] 3R_28282480_SNP [dm6]	G	T	1.187e^-4	0.537	UPSTREAM CG34436 INTERGENIC
3L	6513601	3L_6513601_SNP [dm3] 3L_6520501_SNP [dm6]	C	A	1.189e^-4	0.537	INTRON sfl
X	19926869	X_19926869_INS [dm3] X_20032836_INS [dm6]	T	TGTGCCTT	1.195e^-4	0.537	INTRON Dop2R
3R	24767972	3R_24767972_SNP [dm3] 3R_28942250_SNP [dm6]	G	C	1.196e^-4	0.537	INTRON CG14521
3L	16769498	3L_16769498_SNP [dm3] 3L_16776398_SNP [dm6]	A	C	1.196e^-4	0.537	UTR_3_PRIME Nrt DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	2152096	3L_2152096_SNP [dm3] 3L_2152096_SNP [dm6]	A	T	1.199e^-4	0.537	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	1.200e^-4	0.537	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3L	5237973	3L_5237973_SNP [dm3] 3L_5244873_SNP [dm6]	G	A	1.207e^-4	0.537	INTRON shep
3L	9652911	3L_9652911_SNP [dm3] 3L_9659811_SNP [dm6]	T	C	1.210e^-4	0.537	DOWNSTREAM CG33696 INTRON fry
3L	11625304	3L_11625304_SNP [dm3] 3L_11632204_SNP [dm6]	A	T	1.213e^-4	0.537	DOWNSTREAM CR45158 INTRON CG32091
2R	18707578	2R_18707578_SNP [dm3] 2R_22820073_SNP [dm6]	C	T	1.214e^-4	0.537	INTRON CG30271	TF binding site mE1_TFBS_chinmo
3L	16881535	3L_16881535_INS [dm3] 3L_16888435_INS [dm6]	A	AA	1.218e^-4	0.537	INTRON Lmpt
3R	5831791	3R_5831791_SNP [dm3] 3R_10006069_SNP [dm6]	T	C	1.219e^-4	0.537	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16430686	2L_16430686_SNP [dm3] 2L_16430686_SNP [dm6]	T	C	1.222e^-4	0.537	INTRON CG5888
2L	4503688	2L_4503688_SNP [dm3] 2L_4503688_SNP [dm6]	C	G	1.225e^-4	0.537	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5363515	3R_5363515_SNP [dm3] 3R_9537793_SNP [dm6]	T	G	1.227e^-4	0.537	UTR_3_PRIME mura DOWNSTREAM mura
3R	10504088	3R_10504088_SNP [dm3] 3R_14678366_SNP [dm6]	C	T	1.232e^-4	0.537	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	18874454	3L_18874454_SNP [dm3] 3L_18881354_SNP [dm6]	C	T	1.232e^-4	0.537	INTRON CG3961
2R	16372454	2R_16372454_SNP [dm3] 2R_20484949_SNP [dm6]	T	C	1.234e^-4	0.537	INTERGENIC
3L	5252550	3L_5252550_SNP [dm3] 3L_5259450_SNP [dm6]	G	A	1.234e^-4	0.537	INTRON shep
2L	16365987	2L_16365987_SNP [dm3] 2L_16365987_SNP [dm6]	C	T	1.234e^-4	0.537	SYNONYMOUS_CODING jhamt
2L	1655732	2L_1655732_SNP [dm3] 2L_1655732_SNP [dm6]	C	A	1.237e^-4	0.537	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	6538718	3R_6538718_SNP [dm3] 3R_10712996_SNP [dm6]	A	T	1.241e^-4	0.537	INTERGENIC
2L	16431169	2L_16431169_SNP [dm3] 2L_16431169_SNP [dm6]	C	T	1.245e^-4	0.537	INTRON CG5888
3L	16175430	3L_16175430_SNP [dm3] 3L_16182330_SNP [dm6]	T	C	1.246e^-4	0.537	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18459325	3L_18459325_SNP [dm3] 3L_18466225_SNP [dm6]	G	A	1.246e^-4	0.537	INTERGENIC
3R	12672467	3R_12672467_SNP [dm3] 3R_16846745_SNP [dm6]	T	G	1.247e^-4	0.537	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	5819202	3R_5819202_SNP [dm3] 3R_9993480_SNP [dm6]	C	A	1.248e^-4	0.537	UTR_3_PRIME Glut4EF
3R	4062017	3R_4062017_SNP [dm3] 3R_8236295_SNP [dm6]	A	C	1.249e^-4	0.537	NON_SYNONYMOUS_CODING DNApol-iota DOWNSTREAM Ada2b
2R	12518258	2R_12518258_SNP [dm3] 2R_16630753_SNP [dm6]	C	T	1.258e^-4	0.54	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo
3L	1196839	3L_1196839_SNP [dm3] 3L_1196839_SNP [dm6]	G	T	1.266e^-4	0.542	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24561449	3R_24561449_SNP [dm3] 3R_28735727_SNP [dm6]	A	G	1.270e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	900563	2L_900563_SNP [dm3] 2L_900563_SNP [dm6]	C	T	1.279e^-4	0.545	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3554043	2L_3554043_SNP [dm3] 2L_3554043_SNP [dm6]	T	A	1.284e^-4	0.545	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19904667	X_19904667_SNP [dm3] X_20010634_SNP [dm6]	G	A	1.285e^-4	0.545	INTRON Dop2R
3L	7087743	3L_7087743_SNP [dm3] 3L_7094643_SNP [dm6]	G	A	1.291e^-4	0.545	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	18437662	2R_18437662_SNP [dm3] 2R_22550157_SNP [dm6]	C	A	1.295e^-4	0.545	UTR_5_PRIME CG6018 INTRON px
3L	5237965	3L_5237965_SNP [dm3] 3L_5244865_SNP [dm6]	G	A	1.295e^-4	0.545	INTRON shep
3L	11528288	3L_11528288_SNP [dm3] 3L_11535188_SNP [dm6]	T	A	1.296e^-4	0.545	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4564340	2L_4564340_SNP [dm3] 2L_4564340_SNP [dm6]	T	A	1.302e^-4	0.546	INTRON dp	TF binding site mE1_TFBS_cad
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	1.310e^-4	0.548	INTRON Pde9
X	9485348	X_9485348_SNP [dm3] X_9591315_SNP [dm6]	G	A	1.314e^-4	0.548	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11625339	3L_11625339_SNP [dm3] 3L_11632239_SNP [dm6]	A	G	1.316e^-4	0.548	DOWNSTREAM CR45158 INTRON CG32091
2L	15319295	2L_15319295_SNP [dm3] 2L_15319295_SNP [dm6]	T	C	1.318e^-4	0.548	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9803634	2L_9803634_SNP [dm3] 2L_9803634_SNP [dm6]	C	T	1.327e^-4	0.55	INTRON nAChRalpha6
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	1.341e^-4	0.554	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
2L	142526	2L_142526_SNP [dm3] 2L_142526_SNP [dm6]	A	T	1.342e^-4	0.554	UTR_5_PRIME CG31974 UPSTREAM CG11454 INTRON CG11455	TF binding site mE1_TFBS_sens
2L	18091400	2L_18091400_SNP [dm3] 2L_18091400_SNP [dm6]	C	A	1.348e^-4	0.555	INTRON CG15153
X	19238309	X_19238309_SNP [dm3] X_19344276_SNP [dm6]	C	T	1.350e^-4	0.555	INTRON nAChRalpha7
3L	2124495	3L_2124495_SNP [dm3] 3L_2124495_SNP [dm6]	G	A	1.354e^-4	0.555	SYNONYMOUS_CODING zormin INTRON zormin
3L	2506125	3L_2506125_SNP [dm3] 3L_2506125_SNP [dm6]	T	A	1.357e^-4	0.555	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_twi
3R	4791824	3R_4791824_INS [dm3] 3R_8966102_INS [dm6]	A	ATT	1.366e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20235481	X_20235481_INS [dm3] X_20364454_INS [dm6]	T	TTTGGCT	1.377e^-4	0.555	INTERGENIC
3L	2122725	3L_2122725_SNP [dm3] 3L_2122725_SNP [dm6]	C	A	1.387e^-4	0.555	UTR_3_PRIME zormin INTRON zormin
X	16859973	X_16859973_SNP [dm3] X_16965940_SNP [dm6]	A	G	1.398e^-4	0.555	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3L	9593441	3L_9593441_SNP [dm3] 3L_9600341_SNP [dm6]	G	A	1.398e^-4	0.555	UTR_3_PRIME CG3222 DOWNSTREAM CG3088
2L	5949357	2L_5949357_SNP [dm3] 2L_5949357_SNP [dm6]	C	T	1.405e^-4	0.555	UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	1.412e^-4	0.555	DOWNSTREAM CR44415 INTERGENIC
X	10334107	X_10334107_SNP [dm3] X_10440074_SNP [dm6]	A	C	1.412e^-4	0.555	INTRON CG32683
3L	18450365	3L_18450365_SNP [dm3] 3L_18457265_SNP [dm6]	C	T	1.421e^-4	0.555	UPSTREAM CR44670 EXON CR44671
X	1630545	X_1630545_DEL [dm3] X_1736512_DEL [dm6]	TTT	C	1.421e^-4	0.555	UTR_3_PRIME Scgdelta
2L	1658105	2L_1658105_SNP [dm3] 2L_1658105_SNP [dm6]	C	T	1.422e^-4	0.555	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	2661599	3L_2661599_SNP [dm3] 3L_2661599_SNP [dm6]	G	A	1.423e^-4	0.555	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
2L	4008505	2L_4008505_SNP [dm3] 2L_4008505_SNP [dm6]	T	G	1.435e^-4	0.555	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	5804878	2L_5804878_SNP [dm3] 2L_5804878_SNP [dm6]	G	T	1.436e^-4	0.555	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	1.438e^-4	0.555	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8915143	2L_8915143_SNP [dm3] 2L_8915143_SNP [dm6]	G	T	1.439e^-4	0.555	INTRON CG34398
X	12252238	X_12252238_SNP [dm3] X_12358205_SNP [dm6]	C	T	1.441e^-4	0.555	INTERGENIC
3L	10000505	3L_10000505_SNP [dm3] 3L_10007405_SNP [dm6]	G	A	1.442e^-4	0.555	INTRON dpr6
3R	13557283	3R_13557283_SNP [dm3] 3R_17731561_SNP [dm6]	T	G	1.448e^-4	0.555	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23684609	3R_23684609_SNP [dm3] 3R_27858887_SNP [dm6]	C	A	1.449e^-4	0.555	INTRON CG34353
2L	10450461	2L_10450461_SNP [dm3] 2L_10450461_SNP [dm6]	T	A	1.453e^-4	0.555	DOWNSTREAM loh INTRON ppk10
3R	9948704	3R_9948704_SNP [dm3] 3R_14122982_SNP [dm6]	T	C	1.455e^-4	0.555	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	4675093	2L_4675093_SNP [dm3] 2L_4675093_SNP [dm6]	A	G	1.455e^-4	0.555	INTERGENIC
X	5988781	X_5988781_DEL [dm3] X_6094748_DEL [dm6]	CGTCACGATATTGGGC...	C	1.457e^-4	0.555	UTR_5_PRIME Nep1 INTRON Nep1
2L	8929951	2L_8929951_SNP [dm3] 2L_8929951_SNP [dm6]	C	T	1.457e^-4	0.555	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14391816	3R_14391816_SNP [dm3] 3R_18566094_SNP [dm6]	T	C	1.470e^-4	0.555	UPSTREAM CG43194 & 1 other INTERGENIC
X	20235502	X_20235502_SNP [dm3] X_20364475_SNP [dm6]	T	A	1.471e^-4	0.555	INTERGENIC
2L	4657401	2L_4657401_SNP [dm3] 2L_4657401_SNP [dm6]	A	G	1.474e^-4	0.555	INTERGENIC
2L	15801346	2L_15801346_SNP [dm3] 2L_15801346_SNP [dm6]	C	T	1.483e^-4	0.555	INTERGENIC
2L	3937240	2L_3937240_SNP [dm3] 2L_3937240_SNP [dm6]	C	G	1.484e^-4	0.555	INTRON fred
X	7725807	X_7725807_SNP [dm3] X_7831774_SNP [dm6]	G	A	1.487e^-4	0.555	INTRON CG1402
X	19931510	X_19931510_SNP [dm3] X_20037477_SNP [dm6]	A	G	1.488e^-4	0.555	INTRON Dop2R
X	18146569	X_18146569_SNP [dm3] X_18252536_SNP [dm6]	C	A	1.489e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4484720	3L_4484720_SNP [dm3] 3L_4484720_SNP [dm6]	A	G	1.494e^-4	0.555	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	18437309	3L_18437309_SNP [dm3] 3L_18444209_SNP [dm6]	A	T	1.494e^-4	0.555	INTERGENIC
3L	5691635	3L_5691635_SNP [dm3] 3L_5698535_SNP [dm6]	A	C	1.496e^-4	0.555	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14148566	2R_14148566_SNP [dm3] 2R_18261061_SNP [dm6]	T	G	1.502e^-4	0.555	INTERGENIC
X	5366432	X_5366432_SNP [dm3] X_5472399_SNP [dm6]	G	C	1.504e^-4	0.555	INTRON SPR
X	11112726	X_11112726_SNP [dm3] X_11218693_SNP [dm6]	G	C	1.506e^-4	0.555	DOWNSTREAM CG44422 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9474830	2L_9474830_DEL [dm3] 2L_9474830_DEL [dm6]	TTTTTGAACGAAATGTGTAT...	T	1.509e^-4	0.555	INTERGENIC
2L	2893295	2L_2893295_SNP [dm3] 2L_2893295_SNP [dm6]	C	T	1.515e^-4	0.555	INTRON lilli	TF binding site BDTNP1_TFBS_twi
X	15346836	X_15346836_SNP [dm3] X_15452803_SNP [dm6]	C	T	1.519e^-4	0.555	UTR_3_PRIME Ahcy13 UPSTREAM CG11655 DOWNSTREAM Ahcy13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14470411	2R_14470411_SNP [dm3] 2R_18582906_SNP [dm6]	T	C	1.521e^-4	0.555	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10400173	X_10400173_SNP [dm3] X_10506140_SNP [dm6]	A	G	1.522e^-4	0.555	INTRON spri
2L	17860683	2L_17860683_SNP [dm3] 2L_17860683_SNP [dm6]	G	A	1.522e^-4	0.555	INTRON CadN2
X	7310436	X_7310436_SNP [dm3] X_7416403_SNP [dm6]	C	T	1.522e^-4	0.555	UPSTREAM CG34337 INTERGENIC
3R	24088661	3R_24088661_SNP [dm3] 3R_28262939_SNP [dm6]	G	C	1.529e^-4	0.555	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	15108614	3R_15108614_SNP [dm3] 3R_19282892_SNP [dm6]	C	G	1.530e^-4	0.555	INTERGENIC
3L	4482287	3L_4482287_SNP [dm3] 3L_4482287_SNP [dm6]	C	A	1.532e^-4	0.555	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	9348996	3L_9348996_SNP [dm3] 3L_9355896_SNP [dm6]	C	T	1.534e^-4	0.555	DOWNSTREAM CG32040 INTRON UGP
2R	18974219	2R_18974219_SNP [dm3] 2R_23086696_SNP [dm6]	A	T	1.537e^-4	0.555	UPSTREAM CG13538 & 1 other INTERGENIC
2L	16430701	2L_16430701_SNP [dm3] 2L_16430701_SNP [dm6]	G	A	1.538e^-4	0.555	INTRON CG5888
2L	16809229	2L_16809229_SNP [dm3] 2L_16809229_SNP [dm6]	T	G	1.540e^-4	0.555	INTRON CG13280 & 1 other
2L	9421660	2L_9421660_SNP [dm3] 2L_9421660_SNP [dm6]	A	G	1.552e^-4	0.555	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7440910	2L_7440910_SNP [dm3] 2L_7440910_SNP [dm6]	G	T	1.562e^-4	0.555	UTR_5_PRIME CG5973 INTRON CG5973
2R	9177762	2R_9177762_SNP [dm3] 2R_13290257_SNP [dm6]	C	T	1.571e^-4	0.555	INTRON Dh31-R
3L	21437983	3L_21437983_SNP [dm3] 3L_21444883_SNP [dm6]	G	A	1.577e^-4	0.555	UPSTREAM CG5656 & 1 other INTERGENIC
X	5448107	X_5448107_SNP [dm3] X_5554074_SNP [dm6]	T	C	1.584e^-4	0.555	INTRON Vsx2
3R	27263170	3R_27263170_SNP [dm3] 3R_31437448_SNP [dm6]	A	G	1.587e^-4	0.555	INTRON Gprk2
3L	12317303	3L_12317303_SNP [dm3] 3L_12324203_SNP [dm6]	A	T	1.588e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	1.589e^-4	0.555	INTRON ush
X	19113449	X_19113449_SNP [dm3] X_19219416_SNP [dm6]	G	A	1.591e^-4	0.555	INTERGENIC
3L	17684511	3L_17684511_SNP [dm3] 3L_17691411_SNP [dm6]	T	G	1.593e^-4	0.555	INTRON Ccn
2L	5927663	2L_5927663_SNP [dm3] 2L_5927663_SNP [dm6]	T	C	1.598e^-4	0.555	INTRON dsf
2L	18091416	2L_18091416_SNP [dm3] 2L_18091416_SNP [dm6]	C	A	1.600e^-4	0.555	INTRON CG15153
3L	12383239	3L_12383239_SNP [dm3] 3L_12390139_SNP [dm6]	T	G	1.605e^-4	0.555	INTRON Ncc69
X	16152343	X_16152343_INS [dm3] X_16258310_INS [dm6]	T	TT	1.606e^-4	0.555	INTERGENIC
X	10292462	X_10292462_INS [dm3] X_10398429_INS [dm6]	A	AA	1.614e^-4	0.555	INTRON flw
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	1.617e^-4	0.555	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	1.618e^-4	0.555	INTRON CG43444
3R	12693712	3R_12693712_SNP [dm3] 3R_16867990_SNP [dm6]	G	T	1.620e^-4	0.555	INTRON iab-8
2L	13227367	2L_13227367_SNP [dm3] 2L_13227367_SNP [dm6]	C	T	1.637e^-4	0.555	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	14072871	2R_14072871_SNP [dm3] 2R_18185366_SNP [dm6]	A	T	1.643e^-4	0.555	SYNONYMOUS_CODING CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8954434	X_8954434_SNP [dm3] X_9060401_SNP [dm6]	C	G	1.643e^-4	0.555	INTRON CG15365
2R	9088218	2R_9088218_SNP [dm3] 2R_13200713_SNP [dm6]	C	T	1.648e^-4	0.555	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad
3L	21202252	3L_21202252_SNP [dm3] 3L_21209152_SNP [dm6]	C	T	1.650e^-4	0.555	SYNONYMOUS_CODING CG10510	TF binding site mE1_TFBS_cad
3L	4647316	3L_4647316_SNP [dm3] 3L_4647316_SNP [dm6]	T	A	1.655e^-4	0.555	UPSTREAM CG32238 INTRON axo
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	1.659e^-4	0.555	DOWNSTREAM CR44415 INTERGENIC
3R	21157329	3R_21157329_SNP [dm3] 3R_25331607_SNP [dm6]	A	T	1.661e^-4	0.555	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
X	15869989	X_15869989_SNP [dm3] X_15975956_SNP [dm6]	T	C	1.663e^-4	0.555	UPSTREAM CG42766 INTRON Or13a
X	13661089	X_13661089_SNP [dm3] X_13767056_SNP [dm6]	A	T	1.669e^-4	0.555	UPSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_twi
X	22136704	X_22136704_SNP [dm3] X_22734868_SNP [dm6]	G	A	1.669e^-4	0.555	INTRON CR44997
3R	13063978	3R_13063978_SNP [dm3] 3R_17238256_SNP [dm6]	A	T	1.670e^-4	0.555	INTRON beat-IIb
X	20235544	X_20235544_SNP [dm3] X_20364517_SNP [dm6]	G	A	1.673e^-4	0.555	INTERGENIC
3L	4483559	3L_4483559_SNP [dm3] 3L_4483559_SNP [dm6]	C	T	1.677e^-4	0.555	SYNONYMOUS_CODING CG11350
3R	19127082	3R_19127082_SNP [dm3] 3R_23301360_SNP [dm6]	T	G	1.677e^-4	0.555	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25240219	3R_25240219_SNP [dm3] 3R_29414497_SNP [dm6]	C	A	1.677e^-4	0.555	INTRON Ptp99A
X	3794638	X_3794638_SNP [dm3] X_3900605_SNP [dm6]	T	A	1.679e^-4	0.555	INTRON CG42541
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	1.684e^-4	0.555	INTERGENIC
2L	4324389	2L_4324389_SNP [dm3] 2L_4324389_SNP [dm6]	G	C	1.685e^-4	0.555	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22278226	3R_22278226_SNP [dm3] 3R_26452504_SNP [dm6]	A	G	1.686e^-4	0.555	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
3L	4141441	3L_4141441_SNP [dm3] 3L_4141441_SNP [dm6]	T	G	1.686e^-4	0.555	UPSTREAM Akh & 1 other DOWNSTREAM Ras64B INTERGENIC
3L	18645851	3L_18645851_SNP [dm3] 3L_18652751_SNP [dm6]	A	G	1.691e^-4	0.555	INTRON MYPT-75D
2R	6088676	2R_6088676_SNP [dm3] 2R_10201171_SNP [dm6]	A	G	1.691e^-4	0.555	INTERGENIC
X	19497280	X_19497280_SNP [dm3] X_19603247_SNP [dm6]	A	C	1.705e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	6203756	3R_6203756_SNP [dm3] 3R_10378034_SNP [dm6]	C	T	1.709e^-4	0.555	UTR_5_PRIME Rfx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	3466522	X_3466522_SNP [dm3] X_3572489_SNP [dm6]	A	G	1.711e^-4	0.555	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8	TF binding site mE1_TFBS_sens
2L	10450742	2L_10450742_SNP [dm3] 2L_10450742_SNP [dm6]	A	G	1.715e^-4	0.555	SPLICE_SITE_REGION ppk10 DOWNSTREAM loh INTRON ppk10
3R	961082	3R_961082_SNP [dm3] 3R_5135360_SNP [dm6]	G	A	1.715e^-4	0.555	INTERGENIC
3L	19429608	3L_19429608_SNP [dm3] 3L_19436508_SNP [dm6]	G	A	1.718e^-4	0.555	INTERGENIC
2R	12443070	2R_12443070_SNP [dm3] 2R_16555565_SNP [dm6]	T	A	1.719e^-4	0.555	INTRON Syn2
X	19158631	X_19158631_SNP [dm3] X_19264598_SNP [dm6]	T	C	1.723e^-4	0.555	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25698000	3R_25698000_SNP [dm3] 3R_29872278_SNP [dm6]	C	A	1.723e^-4	0.555	SPLICE_SITE_REGION CG34133 INTRON CG34133	TF binding site mE1_TFBS_cad
2L	1658149	2L_1658149_SNP [dm3] 2L_1658149_SNP [dm6]	C	T	1.728e^-4	0.555	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19652977	2R_19652977_SNP [dm3] 2R_23765454_SNP [dm6]	G	A	1.729e^-4	0.555	INTRON CG9850
X	18163811	X_18163811_SNP [dm3] X_18269778_SNP [dm6]	G	A	1.735e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25877895	3R_25877895_SNP [dm3] 3R_30052173_SNP [dm6]	G	A	1.737e^-4	0.555	UPSTREAM CG7946 & 1 other EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19158783	X_19158783_SNP [dm3] X_19264750_SNP [dm6]	A	G	1.740e^-4	0.555	NON_SYNONYMOUS_CODING Vav INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10927750	X_10927750_INS [dm3] X_11033717_INS [dm6]	A	ATTAACAAATTTTA...	1.741e^-4	0.555	INTRON CG42339
2L	17402906	2L_17402906_SNP [dm3] 2L_17402906_SNP [dm6]	T	A	1.744e^-4	0.555	DOWNSTREAM CLIP-190 INTRON CLIP-190	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18817356	3L_18817356_SNP [dm3] 3L_18824256_SNP [dm6]	A	G	1.748e^-4	0.555	INTRON Cat
2L	18091419	2L_18091419_DEL [dm3] 2L_18091419_DEL [dm6]	GAATACGGCGAGAAG...	A	1.748e^-4	0.555	INTRON CG15153
3R	10882574	3R_10882574_SNP [dm3] 3R_15056852_SNP [dm6]	A	T	1.750e^-4	0.555	UTR_3_PRIME dpr9
3L	8616219	3L_8616219_SNP [dm3] 3L_8623119_SNP [dm6]	T	G	1.750e^-4	0.555	SYNONYMOUS_CODING GAPsec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17588056	X_17588056_SNP [dm3] X_17694023_SNP [dm6]	A	C	1.751e^-4	0.555	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4485062	3L_4485062_SNP [dm3] 3L_4485062_SNP [dm6]	A	G	1.751e^-4	0.555	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	2759827	2L_2759827_SNP [dm3] 2L_2759827_SNP [dm6]	T	A	1.752e^-4	0.555	UPSTREAM Trn-SR & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18434386	2R_18434386_SNP [dm3] 2R_22546881_SNP [dm6]	T	C	1.752e^-4	0.555	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4561981	2L_4561981_SNP [dm3] 2L_4561981_SNP [dm6]	T	A	1.752e^-4	0.555	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	4291327	X_4291327_SNP [dm3] X_4397294_SNP [dm6]	G	A	1.757e^-4	0.555	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13965365	3R_13965365_SNP [dm3] 3R_18139643_SNP [dm6]	C	T	1.763e^-4	0.555	INTERGENIC
X	19497285	X_19497285_SNP [dm3] X_19603252_SNP [dm6]	A	G	1.772e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18450990	3L_18450990_SNP [dm3] 3L_18457890_SNP [dm6]	C	A	1.772e^-4	0.555	UPSTREAM CR44671 INTERGENIC
3R	5831890	3R_5831890_SNP [dm3] 3R_10006168_SNP [dm6]	C	T	1.773e^-4	0.555	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	1.776e^-4	0.555	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
X	9919615	X_9919615_SNP [dm3] X_10025582_SNP [dm6]	A	G	1.776e^-4	0.555	INTRON Cht6
3L	9897792	3L_9897792_SNP [dm3] 3L_9904692_SNP [dm6]	C	T	1.779e^-4	0.555	INTERGENIC
3R	4791816	3R_4791816_INS [dm3] 3R_8966094_INS [dm6]	T	TGTTATCAATTTTATGTTAT...	1.779e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2025216	2L_2025216_SNP [dm3] 2L_2025216_SNP [dm6]	G	A	1.783e^-4	0.555	INTRON CG4238
2R	5259826	2R_5259826_SNP [dm3] 2R_9372321_SNP [dm6]	G	A	1.785e^-4	0.555	INTRON CG13954	TF binding site mE1_TFBS_chinmo
2L	15801299	2L_15801299_SNP [dm3] 2L_15801299_SNP [dm6]	G	C	1.787e^-4	0.555	INTERGENIC
X	7481304	X_7481304_SNP [dm3] X_7587271_SNP [dm6]	G	T	1.788e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs
3L	2834686	3L_2834686_SNP [dm3] 3L_2834686_SNP [dm6]	G	T	1.790e^-4	0.555	INTRON CG43444
3R	15194508	3R_15194508_SNP [dm3] 3R_19368786_SNP [dm6]	T	A	1.791e^-4	0.555	DOWNSTREAM Ino80 INTERGENIC
3R	24105625	3R_24105625_SNP [dm3] 3R_28279903_SNP [dm6]	A	T	1.795e^-4	0.555	INTERGENIC
3L	3726920	3L_3726920_SNP [dm3] 3L_3726920_SNP [dm6]	T	G	1.798e^-4	0.555	INTRON CG32264
2L	21943641	2L_21943641_SNP [dm3] 2L_21943641_SNP [dm6]	T	G	1.806e^-4	0.555	INTERGENIC
3R	5752344	3R_5752344_SNP [dm3] 3R_9926622_SNP [dm6]	G	T	1.812e^-4	0.555	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9593448	3L_9593448_SNP [dm3] 3L_9600348_SNP [dm6]	C	T	1.812e^-4	0.555	DOWNSTREAM CG3088 & 1 other INTERGENIC
X	16617000	X_16617000_SNP [dm3] X_16722967_SNP [dm6]	C	T	1.814e^-4	0.555	INTRON CG32572	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2122032	3L_2122032_SNP [dm3] 3L_2122032_SNP [dm6]	T	G	1.817e^-4	0.555	DOWNSTREAM zormin INTRON zormin	TF binding site BDTNP1_TFBS_twi
2L	13230834	2L_13230834_SNP [dm3] 2L_13230834_SNP [dm6]	C	T	1.819e^-4	0.555	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	7071513	X_7071513_SNP [dm3] X_7177480_SNP [dm6]	G	T	1.821e^-4	0.555	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17750641	X_17750641_SNP [dm3] X_17856608_SNP [dm6]	G	A	1.824e^-4	0.555	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	21845975	3L_21845975_SNP [dm3] 3L_21852875_SNP [dm6]	T	C	1.827e^-4	0.555	INTRON mub
3L	7272926	3L_7272926_MNP [dm3] 3L_7279826_MNP [dm6]	CAA	TTG	1.827e^-4	0.555	INTRON unc-13-4A
X	20023978	X_20023978_SNP [dm3] X_20129945_SNP [dm6]	G	T	1.836e^-4	0.555	DOWNSTREAM CG42582 INTERGENIC	TF binding site mE1_TFBS_inv
3R	19303469	3R_19303469_SNP [dm3] 3R_23477747_SNP [dm6]	G	A	1.841e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11048312	3L_11048312_SNP [dm3] 3L_11055212_SNP [dm6]	T	C	1.842e^-4	0.555	UPSTREAM CG7888 INTRON CG7888
X	20793144	X_20793144_SNP [dm3] X_20922117_SNP [dm6]	G	T	1.845e^-4	0.555	INTRON shakB
3R	6478421	3R_6478421_SNP [dm3] 3R_10652699_SNP [dm6]	G	A	1.847e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478427	3R_6478427_SNP [dm3] 3R_10652705_SNP [dm6]	T	C	1.847e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	14723484	3R_14723484_SNP [dm3] 3R_18897762_SNP [dm6]	G	A	1.848e^-4	0.555	UPSTREAM CG14297 INTERGENIC
3L	8957979	3L_8957979_SNP [dm3] 3L_8964879_SNP [dm6]	G	T	1.849e^-4	0.555	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
2L	12319145	2L_12319145_SNP [dm3] 2L_12319145_SNP [dm6]	T	C	1.849e^-4	0.555	INTERGENIC
2R	5259454	2R_5259454_SNP [dm3] 2R_9371949_SNP [dm6]	C	A	1.851e^-4	0.555	INTRON CG13954
3L	8616154	3L_8616154_SNP [dm3] 3L_8623054_SNP [dm6]	C	A	1.858e^-4	0.555	DOWNSTREAM S-Lap2 INTRON GAPsec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14751193	X_14751193_SNP [dm3] X_14857160_SNP [dm6]	T	A	1.868e^-4	0.555	UPSTREAM CG9519 INTRON Flo2
3R	18969955	3R_18969955_SNP [dm3] 3R_23144233_SNP [dm6]	G	A	1.872e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9280008	2L_9280008_SNP [dm3] 2L_9280008_SNP [dm6]	C	T	1.873e^-4	0.555	INTRON Ggamma30A
3L	7439109	3L_7439109_SNP [dm3] 3L_7446009_SNP [dm6]	A	G	1.878e^-4	0.555	INTRON CG42458
X	20952216	X_20952216_SNP [dm3] X_21081189_SNP [dm6]	T	C	1.891e^-4	0.555	UTR_3_PRIME bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8606736	3L_8606736_SNP [dm3] 3L_8613636_SNP [dm6]	C	T	1.897e^-4	0.555	INTRON CG6282
X	4447326	X_4447326_SNP [dm3] X_4553293_SNP [dm6]	A	T	1.902e^-4	0.555	UTR_3_PRIME CG11444 DOWNSTREAM CG3527 INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	16130583	X_16130583_SNP [dm3] X_16236550_SNP [dm6]	G	A	1.908e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	1.910e^-4	0.555	INTERGENIC
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	1.913e^-4	0.555	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
2L	4564915	2L_4564915_SNP [dm3] 2L_4564915_SNP [dm6]	A	C	1.923e^-4	0.555	INTRON dp
3R	16406794	3R_16406794_SNP [dm3] 3R_20581072_SNP [dm6]	A	G	1.925e^-4	0.555	DOWNSTREAM Srp14 & 1 other INTRON CG34008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	19368973	3R_19368973_SNP [dm3] 3R_23543251_SNP [dm6]	T	G	1.928e^-4	0.555	INTERGENIC
2L	9799444	2L_9799444_SNP [dm3] 2L_9799444_SNP [dm6]	T	A	1.928e^-4	0.555	INTRON nAChRalpha6
3L	9806067	3L_9806067_SNP [dm3] 3L_9812967_SNP [dm6]	T	C	1.933e^-4	0.555	UPSTREAM CG43897 INTERGENIC
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	1.933e^-4	0.555	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17048738	2R_17048738_SNP [dm3] 2R_21161233_SNP [dm6]	A	G	1.936e^-4	0.555	UPSTREAM CG30389 & 2 others DOWNSTREAM tRNA:G3:57BCa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	1.936e^-4	0.555	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5366948	X_5366948_SNP [dm3] X_5472915_SNP [dm6]	A	T	1.945e^-4	0.555	INTRON SPR
3L	18447385	3L_18447385_SNP [dm3] 3L_18454285_SNP [dm6]	G	T	1.949e^-4	0.555	INTERGENIC
2L	15362599	2L_15362599_SNP [dm3] 2L_15362599_SNP [dm6]	A	T	1.950e^-4	0.555	UPSTREAM CG15258 INTERGENIC
2L	17860359	2L_17860359_SNP [dm3] 2L_17860359_SNP [dm6]	C	A	1.953e^-4	0.555	INTRON CadN2
3R	12647192	3R_12647192_SNP [dm3] 3R_16821470_SNP [dm6]	T	A	1.955e^-4	0.555	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5059830	2L_5059830_SNP [dm3] 2L_5059830_SNP [dm6]	G	A	1.958e^-4	0.555	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
3R	20407727	3R_20407727_SNP [dm3] 3R_24582005_SNP [dm6]	G	A	1.958e^-4	0.555	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	12128413	X_12128413_SNP [dm3] X_12234380_SNP [dm6]	C	A	1.960e^-4	0.555	DOWNSTREAM CG32655 INTRON Ten-a
3R	14723325	3R_14723325_SNP [dm3] 3R_18897603_SNP [dm6]	T	A	1.966e^-4	0.555	UPSTREAM CG14297 INTERGENIC
3L	10101469	3L_10101469_SNP [dm3] 3L_10108369_SNP [dm6]	A	G	1.966e^-4	0.555	INTRON dpr6
X	10334109	X_10334109_SNP [dm3] X_10440076_SNP [dm6]	G	A	1.966e^-4	0.555	INTRON CG32683
2R	18399890	2R_18399890_SNP [dm3] 2R_22512385_SNP [dm6]	A	G	1.972e^-4	0.555	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	13244254	X_13244254_SNP [dm3] X_13350221_SNP [dm6]	C	A	1.979e^-4	0.555	INTERGENIC
X	5208452	X_5208452_SNP [dm3] X_5314419_SNP [dm6]	C	T	1.981e^-4	0.555	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3574136	2L_3574136_SNP [dm3] 2L_3574136_SNP [dm6]	A	T	1.985e^-4	0.555	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	10913373	3R_10913373_SNP [dm3] 3R_15087651_SNP [dm6]	C	T	1.985e^-4	0.555	INTRON CG6966
X	4685423	X_4685423_SNP [dm3] X_4791390_SNP [dm6]	A	T	1.987e^-4	0.555	INTERGENIC
3R	12652828	3R_12652828_SNP [dm3] 3R_16827106_SNP [dm6]	C	A	1.992e^-4	0.555	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4487786	3L_4487786_SNP [dm3] 3L_4487786_SNP [dm6]	A	T	2.009e^-4	0.555	INTRON CG13722
X	16622702	X_16622702_SNP [dm3] X_16728669_SNP [dm6]	T	A	2.011e^-4	0.555	INTRON CG9634
X	17262440	X_17262440_SNP [dm3] X_17368407_SNP [dm6]	T	C	2.014e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	316078	2L_316078_SNP [dm3] 2L_316078_SNP [dm6]	T	A	2.018e^-4	0.555	INTRON Plc21C
3R	19115164	3R_19115164_SNP [dm3] 3R_23289442_SNP [dm6]	T	C	2.018e^-4	0.555	SYNONYMOUS_CODING CG4434 DOWNSTREAM pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9806026	3L_9806026_SNP [dm3] 3L_9812926_SNP [dm6]	G	T	2.022e^-4	0.555	UPSTREAM CG43897 INTERGENIC
3R	22506176	3R_22506176_SNP [dm3] 3R_26680454_SNP [dm6]	T	G	2.022e^-4	0.555	INTRON beat-VII
X	3008395	X_3008395_SNP [dm3] X_3114362_SNP [dm6]	T	C	2.024e^-4	0.555	INTRON kirre
2L	2847515	2L_2847515_SNP [dm3] 2L_2847515_SNP [dm6]	G	C	2.025e^-4	0.555	UPSTREAM CG2983 & 1 other INTERGENIC
X	20459087	X_20459087_SNP [dm3] X_20588060_SNP [dm6]	G	T	2.028e^-4	0.555	INTERGENIC
3L	8508691	3L_8508691_SNP [dm3] 3L_8515591_SNP [dm6]	C	A	2.029e^-4	0.555	SYNONYMOUS_CODING CG6765 UPSTREAM CG6683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5734163	X_5734163_SNP [dm3] X_5840130_SNP [dm6]	T	C	2.030e^-4	0.555	UTR_3_PRIME CG15765 DOWNSTREAM CG15765
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.030e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_cad
X	22136720	X_22136720_SNP [dm3] X_22734884_SNP [dm6]	T	A	2.035e^-4	0.555	INTRON CR44997
X	22136722	X_22136722_SNP [dm3] X_22734886_SNP [dm6]	T	C	2.035e^-4	0.555	INTRON CR44997
X	22258209	X_22258209_SNP [dm3] X_22856373_SNP [dm6]	T	C	2.038e^-4	0.555	INTRON CG42346	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19664029	X_19664029_SNP [dm3] X_19769996_SNP [dm6]	C	T	2.039e^-4	0.555	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18448013	3L_18448013_SNP [dm3] 3L_18454913_SNP [dm6]	G	A	2.044e^-4	0.555	INTERGENIC
2L	10014484	2L_10014484_SNP [dm3] 2L_10014484_SNP [dm6]	A	G	2.044e^-4	0.555	SYNONYMOUS_CODING CG13131
3R	24088680	3R_24088680_SNP [dm3] 3R_28262958_SNP [dm6]	C	T	2.045e^-4	0.555	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3L	12308554	3L_12308554_SNP [dm3] 3L_12315454_SNP [dm6]	A	T	2.058e^-4	0.555	INTERGENIC
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	2.061e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11066197	2L_11066197_SNP [dm3] 2L_11066197_SNP [dm6]	A	T	2.067e^-4	0.555	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	2.070e^-4	0.555	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
2L	5971104	2L_5971104_SNP [dm3] 2L_5971104_SNP [dm6]	G	C	2.079e^-4	0.555	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3L	9889089	3L_9889089_SNP [dm3] 3L_9895989_SNP [dm6]	G	C	2.080e^-4	0.555	NON_SYNONYMOUS_CODING CG6707
2R	16987068	2R_16987068_SNP [dm3] 2R_21099563_SNP [dm6]	A	G	2.081e^-4	0.555	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	21806632	3L_21806632_SNP [dm3] 3L_21813532_SNP [dm6]	T	G	2.082e^-4	0.555	UTR_5_PRIME CG43895 INTRON eg
3L	2444605	3L_2444605_SNP [dm3] 3L_2444605_SNP [dm6]	G	A	2.086e^-4	0.555	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad
3L	18444611	3L_18444611_SNP [dm3] 3L_18451511_SNP [dm6]	C	A	2.087e^-4	0.555	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	12354829	2R_12354829_SNP [dm3] 2R_16467324_SNP [dm6]	C	A	2.087e^-4	0.555	SYNONYMOUS_CODING CheB53a UPSTREAM CheB53b
X	16695991	X_16695991_SNP [dm3] X_16801958_SNP [dm6]	G	A	2.090e^-4	0.555	UTR_3_PRIME CG4789 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	5148912	3R_5148912_DEL [dm3] 3R_9323190_DEL [dm6]	GA	G	2.090e^-4	0.555	DOWNSTREAM HP1e INTRON CG8861
3R	3455036	3R_3455036_DEL [dm3] 3R_7629314_DEL [dm6]	ACTCCTTCA	A	2.102e^-4	0.555	INTRON CG34127	TF binding site mE1_TFBS_inv
3R	25240156	3R_25240156_SNP [dm3] 3R_29414434_SNP [dm6]	C	T	2.104e^-4	0.555	INTRON Ptp99A
3R	25240158	3R_25240158_SNP [dm3] 3R_29414436_SNP [dm6]	A	C	2.104e^-4	0.555	INTRON Ptp99A
3R	25240160	3R_25240160_DEL [dm3] 3R_29414438_DEL [dm6]	CTGAATA	C	2.104e^-4	0.555	INTRON Ptp99A
3R	25240168	3R_25240168_SNP [dm3] 3R_29414446_SNP [dm6]	T	C	2.104e^-4	0.555	INTRON Ptp99A
3R	25240182	3R_25240182_SNP [dm3] 3R_29414460_SNP [dm6]	C	T	2.104e^-4	0.555	INTRON Ptp99A
3R	25240187	3R_25240187_SNP [dm3] 3R_29414465_SNP [dm6]	T	C	2.104e^-4	0.555	INTRON Ptp99A
3L	4706354	3L_4706354_SNP [dm3] 3L_4706354_SNP [dm6]	C	A	2.105e^-4	0.555	INTRON RhoGEF64C
3L	9593446	3L_9593446_SNP [dm3] 3L_9600346_SNP [dm6]	C	T	2.109e^-4	0.555	DOWNSTREAM CG3088 & 1 other INTERGENIC
3R	13781156	3R_13781156_SNP [dm3] 3R_17955434_SNP [dm6]	A	G	2.113e^-4	0.555	INTRON cpo
3L	9824569	3L_9824569_SNP [dm3] 3L_9831469_SNP [dm6]	T	C	2.120e^-4	0.555	INTRON CG43897	TF binding site mE1_TFBS_cad
X	18164042	X_18164042_SNP [dm3] X_18270009_SNP [dm6]	C	T	2.127e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	5704322	3R_5704322_SNP [dm3] 3R_9878600_SNP [dm6]	C	T	2.135e^-4	0.555	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9485692	X_9485692_SNP [dm3] X_9591659_SNP [dm6]	T	C	2.137e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15182757	3R_15182757_SNP [dm3] 3R_19357035_SNP [dm6]	T	G	2.141e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5805549	2L_5805549_SNP [dm3] 2L_5805549_SNP [dm6]	C	G	2.141e^-4	0.555	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	7567537	2L_7567537_SNP [dm3] 2L_7567537_SNP [dm6]	A	T	2.141e^-4	0.555	INTRON RapGAP1
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	2.144e^-4	0.555	INTRON Ggamma30A
3R	22278333	3R_22278333_SNP [dm3] 3R_26452611_SNP [dm6]	T	C	2.147e^-4	0.555	UTR_5_PRIME CG5447 DOWNSTREAM Hex-t2
3R	24107495	3R_24107495_SNP [dm3] 3R_28281773_SNP [dm6]	C	T	2.150e^-4	0.555	UPSTREAM CG34436 INTERGENIC
2L	14544975	2L_14544975_SNP [dm3] 2L_14544975_SNP [dm6]	C	G	2.152e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7174244	3R_7174244_SNP [dm3] 3R_11348522_SNP [dm6]	T	A	2.154e^-4	0.555	START_GAINED KP78b UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20288709	3R_20288709_INS [dm3] 3R_24462987_INS [dm6]	G	GACA	2.156e^-4	0.555	DOWNSTREAM CR45649 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	18448104	3L_18448104_SNP [dm3] 3L_18455004_SNP [dm6]	T	C	2.158e^-4	0.555	INTERGENIC
3L	11606172	3L_11606172_SNP [dm3] 3L_11613072_SNP [dm6]	C	T	2.159e^-4	0.555	NON_SYNONYMOUS_CODING Muc68Ca
3L	4457665	3L_4457665_SNP [dm3] 3L_4457665_SNP [dm6]	C	G	2.159e^-4	0.555	SYNONYMOUS_CODING CG11345
2L	16430361	2L_16430361_SNP [dm3] 2L_16430361_SNP [dm6]	T	A	2.162e^-4	0.555	INTRON CG5888
X	10186020	X_10186020_SNP [dm3] X_10291987_SNP [dm6]	A	T	2.167e^-4	0.555	INTRON alpha-Man-I
X	20235500	X_20235500_SNP [dm3] X_20364473_SNP [dm6]	C	G	2.167e^-4	0.555	INTERGENIC
3R	24108186	3R_24108186_SNP [dm3] 3R_28282464_SNP [dm6]	A	G	2.168e^-4	0.555	UPSTREAM CG34436 INTERGENIC
3R	21017758	3R_21017758_SNP [dm3] 3R_25192036_SNP [dm6]	G	A	2.175e^-4	0.555	NON_SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6513908	2L_6513908_SNP [dm3] 2L_6513908_SNP [dm6]	A	G	2.176e^-4	0.555	INTRON CG31637	TF binding site BDTNP1_TFBS_twi
3L	18447034	3L_18447034_SNP [dm3] 3L_18453934_SNP [dm6]	C	T	2.176e^-4	0.555	INTERGENIC
2L	8769047	2L_8769047_SNP [dm3] 2L_8769047_SNP [dm6]	A	G	2.179e^-4	0.555	UPSTREAM CG9463 DOWNSTREAM CG9465 INTERGENIC
2L	17972949	2L_17972949_SNP [dm3] 2L_17972949_SNP [dm6]	G	A	2.179e^-4	0.555	SYNONYMOUS_CODING CG5674 UTR_3_PRIME CG5674 INTRON btv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22326688	X_22326688_SNP [dm3] X_22924852_SNP [dm6]	T	A	2.183e^-4	0.555	INTERGENIC	transposable element FlyBase
3R	16174366	3R_16174366_SNP [dm3] 3R_20348644_SNP [dm6]	G	A	2.187e^-4	0.555	INTERGENIC
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	2.188e^-4	0.555	INTRON alpha-Man-I
2L	16564004	2L_16564004_SNP [dm3] 2L_16564004_SNP [dm6]	T	C	2.188e^-4	0.555	INTRON CG42389
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	2.190e^-4	0.555	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	19158633	X_19158633_SNP [dm3] X_19264600_SNP [dm6]	A	T	2.195e^-4	0.555	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12015393	3L_12015393_SNP [dm3] 3L_12022293_SNP [dm6]	C	T	2.196e^-4	0.555	INTRON rols
2R	10844373	2R_10844373_SNP [dm3] 2R_14956868_SNP [dm6]	T	C	2.198e^-4	0.555	INTRON aPKC
3L	22943063	3L_22943063_SNP [dm3] 3L_22949963_SNP [dm6]	C	A	2.201e^-4	0.555	INTRON Mes2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10443035	X_10443035_SNP [dm3] X_10549002_SNP [dm6]	C	T	2.202e^-4	0.555	INTRON spri
2L	12226680	2L_12226680_SNP [dm3] 2L_12226680_SNP [dm6]	G	T	2.202e^-4	0.555	INTRON aret
2L	12226681	2L_12226681_SNP [dm3] 2L_12226681_SNP [dm6]	G	T	2.202e^-4	0.555	INTRON aret
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	2.203e^-4	0.555	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20609104	3R_20609104_SNP [dm3] 3R_24783382_SNP [dm6]	C	T	2.204e^-4	0.555	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10014483	2L_10014483_SNP [dm3] 2L_10014483_SNP [dm6]	A	G	2.213e^-4	0.555	NON_SYNONYMOUS_CODING CG13131
3R	5767789	3R_5767789_SNP [dm3] 3R_9942067_SNP [dm6]	C	A	2.219e^-4	0.555	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18371015	3L_18371015_SNP [dm3] 3L_18377915_SNP [dm6]	A	T	2.220e^-4	0.555	INTERGENIC
3R	23247193	3R_23247193_SNP [dm3] 3R_27421471_SNP [dm6]	A	G	2.223e^-4	0.555	INTRON side
3R	23670424	3R_23670424_SNP [dm3] 3R_27844702_SNP [dm6]	A	G	2.224e^-4	0.555	UPSTREAM Or98P INTRON CG34353
2L	12319098	2L_12319098_SNP [dm3] 2L_12319098_SNP [dm6]	T	A	2.226e^-4	0.555	INTERGENIC
3L	7272936	3L_7272936_SNP [dm3] 3L_7279836_SNP [dm6]	T	G	2.229e^-4	0.555	INTRON unc-13-4A
X	16617125	X_16617125_SNP [dm3] X_16723092_SNP [dm6]	C	T	2.234e^-4	0.555	INTRON CG32572	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	20955351	X_20955351_SNP [dm3] X_21084324_SNP [dm6]	G	A	2.237e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16747270	3L_16747270_SNP [dm3] 3L_16754170_SNP [dm6]	C	G	2.244e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_cad
X	20235464	X_20235464_SNP [dm3] X_20364437_SNP [dm6]	A	C	2.251e^-4	0.555	INTERGENIC
X	5865504	X_5865504_INS [dm3] X_5971471_INS [dm6]	T	TCAT	2.262e^-4	0.555	INTRON Grip
2L	8716872	2L_8716872_SNP [dm3] 2L_8716872_SNP [dm6]	T	C	2.265e^-4	0.555	INTRON raw	TF binding site mE1_TFBS_inv
X	4291333	X_4291333_SNP [dm3] X_4397300_SNP [dm6]	A	C	2.266e^-4	0.555	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18372279	3L_18372279_SNP [dm3] 3L_18379179_SNP [dm6]	G	A	2.267e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	14088649	3R_14088649_SNP [dm3] 3R_18262927_SNP [dm6]	T	G	2.275e^-4	0.555	INTERGENIC
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	2.277e^-4	0.555	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8890520	2L_8890520_SNP [dm3] 2L_8890520_SNP [dm6]	T	A	2.283e^-4	0.555	UPSTREAM CG42713 INTERGENIC
3R	15260872	3R_15260872_SNP [dm3] 3R_19435150_SNP [dm6]	T	C	2.284e^-4	0.555	INTRON CG31221
2L	5971096	2L_5971096_SNP [dm3] 2L_5971096_SNP [dm6]	A	G	2.294e^-4	0.555	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2L	2373193	2L_2373193_SNP [dm3] 2L_2373193_SNP [dm6]	G	A	2.295e^-4	0.555	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23665482	3R_23665482_SNP [dm3] 3R_27839760_SNP [dm6]	C	A	2.296e^-4	0.555	INTRON CG34353
2L	18263144	2L_18263144_SNP [dm3] 2L_18263144_SNP [dm6]	C	A	2.302e^-4	0.555	UPSTREAM CR44901 INTRON CG42750
3L	1278434	3L_1278434_SNP [dm3] 3L_1278434_SNP [dm6]	C	A	2.303e^-4	0.555	INTRON CG32333
3R	15671321	3R_15671321_SNP [dm3] 3R_19845599_SNP [dm6]	T	C	2.306e^-4	0.555	INTERGENIC
2L	6108496	2L_6108496_SNP [dm3] 2L_6108496_SNP [dm6]	A	T	2.312e^-4	0.555	INTRON stai
2R	17723380	2R_17723380_SNP [dm3] 2R_21835875_SNP [dm6]	A	G	2.313e^-4	0.555	UPSTREAM CG4363 INTRON CG4377
3L	9897728	3L_9897728_SNP [dm3] 3L_9904628_SNP [dm6]	A	T	2.317e^-4	0.555	INTERGENIC
2R	18149592	2R_18149592_SNP [dm3] 2R_22262087_SNP [dm6]	T	A	2.333e^-4	0.555	INTRON dve
X	3796715	X_3796715_SNP [dm3] X_3902682_SNP [dm6]	A	C	2.341e^-4	0.555	INTRON CG42541
X	4331308	X_4331308_SNP [dm3] X_4437275_SNP [dm6]	G	A	2.350e^-4	0.555	INTRON CR32773 & 1 other
X	10448549	X_10448549_SNP [dm3] X_10554516_SNP [dm6]	T	C	2.350e^-4	0.555	INTRON spri
X	5366612	X_5366612_SNP [dm3] X_5472579_SNP [dm6]	G	T	2.350e^-4	0.555	INTRON SPR
3L	3014886	3L_3014886_SNP [dm3] 3L_3014886_SNP [dm6]	A	T	2.351e^-4	0.555	UTR_3_PRIME CG32488 DOWNSTREAM CG32488
X	14493142	X_14493142_SNP [dm3] X_14599109_SNP [dm6]	C	T	2.351e^-4	0.555	INTRON CG9413
X	4051512	X_4051512_SNP [dm3] X_4157479_SNP [dm6]	T	G	2.354e^-4	0.555	INTRON Fas2
3R	13561959	3R_13561959_SNP [dm3] 3R_17736237_SNP [dm6]	T	A	2.354e^-4	0.555	UPSTREAM TyrRII INTERGENIC
3L	16329624	3L_16329624_SNP [dm3] 3L_16336524_SNP [dm6]	A	G	2.355e^-4	0.555	INTERGENIC
X	5162649	X_5162649_DEL [dm3] X_5268616_DEL [dm6]	AA	A	2.360e^-4	0.555	INTERGENIC
3R	10682558	3R_10682558_SNP [dm3] 3R_14856836_SNP [dm6]	G	C	2.369e^-4	0.555	INTRON btsz
X	5327122	X_5327122_SNP [dm3] X_5433089_SNP [dm6]	C	A	2.370e^-4	0.555	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	19439680	3L_19439680_SNP [dm3] 3L_19446580_SNP [dm6]	A	G	2.372e^-4	0.555	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18026336	2L_18026336_SNP [dm3] 2L_18026336_SNP [dm6]	T	C	2.372e^-4	0.555	INTRON rdo
3L	4519298	3L_4519298_SNP [dm3] 3L_4519298_SNP [dm6]	A	T	2.377e^-4	0.555	INTRON Tie
3R	21157386	3R_21157386_SNP [dm3] 3R_25331664_SNP [dm6]	T	C	2.381e^-4	0.555	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
2L	7630317	2L_7630317_SNP [dm3] 2L_7630317_SNP [dm6]	C	T	2.381e^-4	0.555	INTERGENIC
X	7488021	X_7488021_DEL [dm3] X_7593988_DEL [dm6]	TGT	T	2.383e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs
2L	4564788	2L_4564788_SNP [dm3] 2L_4564788_SNP [dm6]	G	A	2.387e^-4	0.555	INTRON dp	TF binding site mE1_TFBS_cad
3L	18447243	3L_18447243_SNP [dm3] 3L_18454143_SNP [dm6]	T	A	2.389e^-4	0.555	INTERGENIC
2L	16429759	2L_16429759_SNP [dm3] 2L_16429759_SNP [dm6]	T	A	2.395e^-4	0.555	INTRON CG5888
2L	16430577	2L_16430577_SNP [dm3] 2L_16430577_SNP [dm6]	G	T	2.395e^-4	0.555	INTRON CG5888
2L	16430642	2L_16430642_SNP [dm3] 2L_16430642_SNP [dm6]	C	T	2.395e^-4	0.555	INTRON CG5888
3R	26940100	3R_26940100_SNP [dm3] 3R_31114378_SNP [dm6]	T	C	2.397e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10151471	3R_10151471_SNP [dm3] 3R_14325749_SNP [dm6]	T	A	2.397e^-4	0.555	NON_SYNONYMOUS_CODING Afti	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	9897794	3L_9897794_SNP [dm3] 3L_9904694_SNP [dm6]	G	A	2.399e^-4	0.555	INTERGENIC
2R	17663631	2R_17663631_SNP [dm3] 2R_21776126_SNP [dm6]	T	C	2.400e^-4	0.555	INTERGENIC
3R	10605347	3R_10605347_SNP [dm3] 3R_14779625_SNP [dm6]	C	T	2.403e^-4	0.555	INTRON jvl	TF binding site mE1_TFBS_HSA
3L	18451474	3L_18451474_SNP [dm3] 3L_18458374_SNP [dm6]	T	G	2.404e^-4	0.555	UPSTREAM CR44671 INTERGENIC
3L	296460	3L_296460_SNP [dm3] 3L_296460_SNP [dm6]	G	A	2.404e^-4	0.555	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	296462	3L_296462_SNP [dm3] 3L_296462_SNP [dm6]	C	G	2.404e^-4	0.555	INTRON RhoGEF3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	18448765	3L_18448765_SNP [dm3] 3L_18455665_SNP [dm6]	A	T	2.407e^-4	0.555	DOWNSTREAM CR44670 INTERGENIC
3L	9085916	3L_9085916_SNP [dm3] 3L_9092816_SNP [dm6]	T	G	2.411e^-4	0.555	UPSTREAM CG32032 DOWNSTREAM Tequila INTERGENIC
3L	4483562	3L_4483562_SNP [dm3] 3L_4483562_SNP [dm6]	G	T	2.417e^-4	0.555	SYNONYMOUS_CODING CG11350
3R	25002954	3R_25002954_SNP [dm3] 3R_29177232_SNP [dm6]	C	T	2.420e^-4	0.555	INTRON CG14509
3L	8605800	3L_8605800_SNP [dm3] 3L_8612700_SNP [dm6]	C	A	2.428e^-4	0.555	INTRON CG6282
X	8957883	X_8957883_DEL [dm3] X_9063850_DEL [dm6]	AA	A	2.434e^-4	0.555	INTRON CG15365
X	5803592	X_5803592_SNP [dm3] X_5909559_SNP [dm6]	C	T	2.435e^-4	0.555	INTRON CG12236
2L	5804224	2L_5804224_INS [dm3] 2L_5804224_INS [dm6]	A	ATTTA	2.436e^-4	0.555	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4458077	3L_4458077_SNP [dm3] 3L_4458077_SNP [dm6]	C	T	2.437e^-4	0.555	INTRON CG11345
3R	5704304	3R_5704304_SNP [dm3] 3R_9878582_SNP [dm6]	G	A	2.444e^-4	0.555	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21167791	3L_21167791_SNP [dm3] 3L_21174691_SNP [dm6]	C	T	2.445e^-4	0.555	SYNONYMOUS_CODING asparagine-synthetase INTRON chb
2L	8889402	2L_8889402_SNP [dm3] 2L_8889402_SNP [dm6]	C	T	2.447e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2R	18512212	2R_18512212_SNP [dm3] 2R_22624707_SNP [dm6]	T	A	2.453e^-4	0.555	INTRON CG33143
X	10452013	X_10452013_SNP [dm3] X_10557980_SNP [dm6]	A	C	2.457e^-4	0.555	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1435363	2L_1435363_SNP [dm3] 2L_1435363_SNP [dm6]	C	G	2.458e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17660986	2R_17660986_SNP [dm3] 2R_21773481_SNP [dm6]	A	G	2.458e^-4	0.555	NON_SYNONYMOUS_CODING CG4021
3R	20610318	3R_20610318_SNP [dm3] 3R_24784596_SNP [dm6]	G	A	2.460e^-4	0.555	UTR_3_PRIME CG5805 DOWNSTREAM CG5805 & 1 other
3R	22296140	3R_22296140_SNP [dm3] 3R_26470418_SNP [dm6]	C	T	2.460e^-4	0.555	UTR_3_PRIME plum DOWNSTREAM CG5455 & 1 other
2L	5922598	2L_5922598_SNP [dm3] 2L_5922598_SNP [dm6]	T	G	2.463e^-4	0.555	UTR_3_PRIME bchs DOWNSTREAM CG9016
2L	20512663	2L_20512663_SNP [dm3] 2L_20512663_SNP [dm6]	C	T	2.464e^-4	0.555	INTERGENIC
3R	12696254	3R_12696254_SNP [dm3] 3R_16870532_SNP [dm6]	T	A	2.466e^-4	0.555	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4563028	2L_4563028_SNP [dm3] 2L_4563028_SNP [dm6]	C	T	2.466e^-4	0.555	INTRON dp	TF binding site mE1_TFBS_cad
3L	8625441	3L_8625441_SNP [dm3] 3L_8632341_SNP [dm6]	A	G	2.470e^-4	0.555	INTRON Zasp66 & 1 other
X	17222045	X_17222045_SNP [dm3] X_17328012_SNP [dm6]	T	A	2.471e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19130737	X_19130737_SNP [dm3] X_19236704_SNP [dm6]	G	A	2.472e^-4	0.555	SYNONYMOUS_CODING CG14196 DOWNSTREAM CG7884	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7806906	2L_7806906_SNP [dm3] 2L_7806906_SNP [dm6]	C	T	2.473e^-4	0.555	SYNONYMOUS_CODING cdc14
3L	3929673	3L_3929673_SNP [dm3] 3L_3929673_SNP [dm6]	C	A	2.475e^-4	0.555	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	25360514	3R_25360514_SNP [dm3] 3R_29534792_SNP [dm6]	T	A	2.479e^-4	0.555	INTRON CR43613	TF binding site mE1_TFBS_chinmo
3L	2662105	3L_2662105_DEL [dm3] 3L_2662105_DEL [dm6]	CCAAGTC	C	2.483e^-4	0.555	DOWNSTREAM CG33233 INTRON Fife & 1 other
2R	17015514	2R_17015514_SNP [dm3] 2R_21128009_SNP [dm6]	A	G	2.486e^-4	0.555	UPSTREAM mago & 1 other INTRON CG4050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22812750	3R_22812750_SNP [dm3] 3R_26987028_SNP [dm6]	C	G	2.487e^-4	0.555	INTRON CG31075	TF binding site mE1_TFBS_cad
X	13249864	X_13249864_SNP [dm3] X_13355831_SNP [dm6]	C	G	2.490e^-4	0.555	INTERGENIC
3R	18334154	3R_18334154_SNP [dm3] 3R_22508432_SNP [dm6]	T	A	2.490e^-4	0.555	INTRON Octbeta1R
X	7488603	X_7488603_SNP [dm3] X_7594570_SNP [dm6]	A	G	2.493e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs
2L	2798054	2L_2798054_SNP [dm3] 2L_2798054_SNP [dm6]	C	T	2.495e^-4	0.555	INTRON Syt1 EXON CR43821	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	14236352	2L_14236352_SNP [dm3] 2L_14236352_SNP [dm6]	A	C	2.496e^-4	0.555	DOWNSTREAM CR44728 INTERGENIC
2L	16366554	2L_16366554_SNP [dm3] 2L_16366554_SNP [dm6]	C	T	2.497e^-4	0.555	SYNONYMOUS_CODING jhamt
3R	6094576	3R_6094576_SNP [dm3] 3R_10268854_SNP [dm6]	G	T	2.505e^-4	0.555	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	8575723	3L_8575723_SNP [dm3] 3L_8582623_SNP [dm6]	C	T	2.515e^-4	0.555	UPSTREAM CG43078 INTRON CG43078
3R	20530219	3R_20530219_SNP [dm3] 3R_24704497_SNP [dm6]	G	T	2.516e^-4	0.555	INTRON slo
3R	14591678	3R_14591678_SNP [dm3] 3R_18765956_SNP [dm6]	G	C	2.520e^-4	0.555	INTRON CG7720
3R	14591888	3R_14591888_SNP [dm3] 3R_18766166_SNP [dm6]	C	T	2.522e^-4	0.555	INTRON CG7720
3L	3309385	3L_3309385_INS [dm3] 3L_3309385_INS [dm6]	T	TT	2.523e^-4	0.555	UPSTREAM ZnT63C INTRON ZnT63C
2L	12191346	2L_12191346_SNP [dm3] 2L_12191346_SNP [dm6]	C	T	2.532e^-4	0.555	INTRON aret
X	10451032	X_10451032_SNP [dm3] X_10556999_SNP [dm6]	G	T	2.534e^-4	0.555	INTRON spri
2L	12454311	2L_12454311_SNP [dm3] 2L_12454311_SNP [dm6]	T	A	2.537e^-4	0.555	EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10449782	X_10449782_SNP [dm3] X_10555749_SNP [dm6]	T	C	2.539e^-4	0.555	UTR_5_PRIME spri UPSTREAM spri INTRON spri
3L	3928486	3L_3928486_SNP [dm3] 3L_3928486_SNP [dm6]	C	T	2.544e^-4	0.555	INTRON Eip63F-1
2L	22063439	2L_22063439_SNP [dm3] 2L_22063439_SNP [dm6]	T	A	2.546e^-4	0.555	INTERGENIC	transposable element FlyBase
2L	14125861	2L_14125861_SNP [dm3] 2L_14125861_SNP [dm6]	T	C	2.551e^-4	0.555	INTERGENIC
X	16617330	X_16617330_SNP [dm3] X_16723297_SNP [dm6]	A	T	2.556e^-4	0.555	INTRON CG32572	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	2.562e^-4	0.555	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	15112180	X_15112180_SNP [dm3] X_15218147_SNP [dm6]	A	C	2.566e^-4	0.555	INTERGENIC
2L	9044740	2L_9044740_SNP [dm3] 2L_9044740_SNP [dm6]	T	C	2.575e^-4	0.555	INTERGENIC
3R	9999082	3R_9999082_SNP [dm3] 3R_14173360_SNP [dm6]	T	G	2.580e^-4	0.555	UTR_3_PRIME Dop1R1
3L	9643789	3L_9643789_SNP [dm3] 3L_9650689_SNP [dm6]	C	T	2.582e^-4	0.555	INTRON fry & 1 other
2L	10183333	2L_10183333_SNP [dm3] 2L_10183333_SNP [dm6]	A	G	2.583e^-4	0.555	INTRON Sur
3R	2088419	3R_2088419_SNP [dm3] 3R_6262697_SNP [dm6]	T	A	2.589e^-4	0.555	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1657259	2L_1657259_INS [dm3] 2L_1657259_INS [dm6]	T	TT	2.590e^-4	0.555	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12721118	X_12721118_SNP [dm3] X_12827085_SNP [dm6]	T	C	2.590e^-4	0.555	INTRON Pde9
X	16891399	X_16891399_SNP [dm3] X_16997366_SNP [dm6]	T	A	2.599e^-4	0.555	INTRON CG45002
3L	18730258	3L_18730258_SNP [dm3] 3L_18737158_SNP [dm6]	G	A	2.600e^-4	0.555	INTERGENIC
2L	4573730	2L_4573730_SNP [dm3] 2L_4573730_SNP [dm6]	T	C	2.604e^-4	0.555	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	16384572	X_16384572_SNP [dm3] X_16490539_SNP [dm6]	G	A	2.604e^-4	0.555	INTRON para
2R	17561194	2R_17561194_SNP [dm3] 2R_21673689_SNP [dm6]	G	C	2.609e^-4	0.555	DOWNSTREAM CG15676 INTERGENIC
2L	9823271	2L_9823271_SNP [dm3] 2L_9823271_SNP [dm6]	T	C	2.609e^-4	0.555	INTRON nAChRalpha6
2L	16366575	2L_16366575_SNP [dm3] 2L_16366575_SNP [dm6]	G	A	2.610e^-4	0.555	INTRON jhamt
2R	9848946	2R_9848946_SNP [dm3] 2R_13961441_SNP [dm6]	G	A	2.613e^-4	0.555	INTRON Cp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	24105586	3R_24105586_SNP [dm3] 3R_28279864_SNP [dm6]	T	G	2.615e^-4	0.555	INTERGENIC
3L	3141354	3L_3141354_SNP [dm3] 3L_3141354_SNP [dm6]	G	T	2.618e^-4	0.555	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	24098530	3R_24098530_SNP [dm3] 3R_28272808_SNP [dm6]	C	G	2.620e^-4	0.555	INTERGENIC
3R	13271285	3R_13271285_SNP [dm3] 3R_17445563_SNP [dm6]	T	A	2.622e^-4	0.555	SPLICE_SITE_REGION CG5873 INTRON CG5873
X	20235473	X_20235473_INS [dm3] X_20364446_INS [dm6]	C	CTTTCCTTT	2.635e^-4	0.555	INTERGENIC
3L	5237996	3L_5237996_SNP [dm3] 3L_5244896_SNP [dm6]	C	A	2.641e^-4	0.555	INTRON shep
3R	25240152	3R_25240152_SNP [dm3] 3R_29414430_SNP [dm6]	G	C	2.641e^-4	0.555	INTRON Ptp99A
2L	6108492	2L_6108492_DEL [dm3] 2L_6108492_DEL [dm6]	GG	C	2.652e^-4	0.555	INTRON stai
3R	22527071	3R_22527071_INS [dm3] 3R_26701349_INS [dm6]	A	ACATACATA	2.653e^-4	0.555	INTRON amon
3R	24088681	3R_24088681_SNP [dm3] 3R_28262959_SNP [dm6]	G	T	2.657e^-4	0.555	SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
X	12347905	X_12347905_SNP [dm3] X_12453872_SNP [dm6]	C	G	2.657e^-4	0.555	UPSTREAM CG15927 DOWNSTREAM Pkcdelta INTERGENIC
3R	14523933	3R_14523933_SNP [dm3] 3R_18698211_SNP [dm6]	A	C	2.658e^-4	0.555	INTERGENIC
2L	5804457	2L_5804457_SNP [dm3] 2L_5804457_SNP [dm6]	T	C	2.659e^-4	0.555	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12319130	2L_12319130_SNP [dm3] 2L_12319130_SNP [dm6]	C	A	2.659e^-4	0.555	INTERGENIC
X	5803583	X_5803583_SNP [dm3] X_5909550_SNP [dm6]	T	C	2.661e^-4	0.555	INTRON CG12236
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	2.663e^-4	0.555	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
3L	4092421	3L_4092421_SNP [dm3] 3L_4092421_SNP [dm6]	T	C	2.666e^-4	0.555	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4666770	3L_4666770_SNP [dm3] 3L_4666770_SNP [dm6]	T	C	2.667e^-4	0.555	SYNONYMOUS_CODING CG32236 INTRON axo
3L	3142275	3L_3142275_SNP [dm3] 3L_3142275_SNP [dm6]	T	A	2.672e^-4	0.555	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4564847	2L_4564847_SNP [dm3] 2L_4564847_SNP [dm6]	T	G	2.673e^-4	0.555	INTRON dp	TF binding site mE1_TFBS_cad
3R	7095124	3R_7095124_SNP [dm3] 3R_11269402_SNP [dm6]	A	G	2.675e^-4	0.555	DOWNSTREAM CR31386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17895741	2L_17895741_SNP [dm3] 2L_17895741_SNP [dm6]	C	T	2.679e^-4	0.555	INTERGENIC
3L	2046684	3L_2046684_SNP [dm3] 3L_2046684_SNP [dm6]	A	T	2.680e^-4	0.555	INTRON sls
X	10384454	X_10384454_SNP [dm3] X_10490421_SNP [dm6]	G	C	2.681e^-4	0.555	UTR_3_PRIME spri DOWNSTREAM spri
3L	6989164	3L_6989164_SNP [dm3] 3L_6996064_SNP [dm6]	G	A	2.682e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
3L	9344968	3L_9344968_SNP [dm3] 3L_9351868_SNP [dm6]	G	C	2.682e^-4	0.555	DOWNSTREAM PGRP-LF INTRON UGP
2L	4488581	2L_4488581_SNP [dm3] 2L_4488581_SNP [dm6]	A	C	2.684e^-4	0.555	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12986433	2L_12986433_SNP [dm3] 2L_12986433_SNP [dm6]	A	T	2.689e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11041805	2R_11041805_SNP [dm3] 2R_15154300_SNP [dm6]	T	A	2.689e^-4	0.555	INTERGENIC
3R	23791481	3R_23791481_SNP [dm3] 3R_27965759_SNP [dm6]	T	C	2.691e^-4	0.555	SYNONYMOUS_CODING CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5238006	3L_5238006_SNP [dm3] 3L_5244906_SNP [dm6]	C	T	2.692e^-4	0.555	INTRON shep
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	2.693e^-4	0.555	INTRON dlg1	TF binding site mE1_TFBS_HSA
3R	7476534	3R_7476534_SNP [dm3] 3R_11650812_SNP [dm6]	A	G	2.698e^-4	0.555	UPSTREAM Elp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17496682	X_17496682_SNP [dm3] X_17602649_SNP [dm6]	G	T	2.703e^-4	0.555	SYNONYMOUS_CODING X11L
2L	334299	2L_334299_DEL [dm3] 2L_334299_DEL [dm6]	CT	C	2.704e^-4	0.555	INTRON Plc21C	TF binding site mE1_TFBS_inv
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	2.708e^-4	0.555	INTRON Pde9
2L	17856345	2L_17856345_SNP [dm3] 2L_17856345_SNP [dm6]	G	A	2.709e^-4	0.555	INTRON CadN2	TF binding site mE1_TFBS_HSA
X	7455990	X_7455990_SNP [dm3] X_7561957_SNP [dm6]	A	T	2.712e^-4	0.555	DOWNSTREAM CR44502 INTERGENIC
X	14219696	X_14219696_SNP [dm3] X_14325663_SNP [dm6]	A	G	2.716e^-4	0.555	INTRON dpr8
X	3783517	X_3783517_SNP [dm3] X_3889484_SNP [dm6]	T	C	2.722e^-4	0.555	SYNONYMOUS_CODING CG15239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2098242	3R_2098242_SNP [dm3] 3R_6272520_SNP [dm6]	G	A	2.724e^-4	0.555	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17491064	3R_17491064_SNP [dm3] 3R_21665342_SNP [dm6]	C	T	2.724e^-4	0.555	INTRON CG15497	TF binding site BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad
2L	8880094	2L_8880094_SNP [dm3] 2L_8880094_SNP [dm6]	C	T	2.734e^-4	0.555	INTERGENIC
2L	2759909	2L_2759909_SNP [dm3] 2L_2759909_SNP [dm6]	A	T	2.737e^-4	0.555	UPSTREAM Trn-SR & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	135684	2L_135684_SNP [dm3] 2L_135684_SNP [dm6]	T	G	2.738e^-4	0.555	UPSTREAM CR44186 INTRON CG11455 EXON CR44185
X	13661207	X_13661207_SNP [dm3] X_13767174_SNP [dm6]	A	T	2.742e^-4	0.555	UPSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9897570	3L_9897570_SNP [dm3] 3L_9904470_SNP [dm6]	T	G	2.745e^-4	0.555	INTERGENIC
2L	1664046	2L_1664046_SNP [dm3] 2L_1664046_SNP [dm6]	T	C	2.746e^-4	0.555	INTRON chinmo
3R	20407549	3R_20407549_SNP [dm3] 3R_24581827_SNP [dm6]	A	T	2.746e^-4	0.555	INTRON CG13624	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	4578823	2R_4578823_SNP [dm3] 2R_8691318_SNP [dm6]	T	C	2.753e^-4	0.555	UPSTREAM Jon44E INTERGENIC
2L	215720	2L_215720_SNP [dm3] 2L_215720_SNP [dm6]	G	A	2.757e^-4	0.555	INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7243696	3L_7243696_SNP [dm3] 3L_7250596_SNP [dm6]	G	A	2.762e^-4	0.555	UPSTREAM CR43470 & 1 other DOWNSTREAM CG14830 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	11036343	2L_11036343_INS [dm3] 2L_11036343_INS [dm6]	A	AAAAGGATCTTTTAATTTG...	2.764e^-4	0.555	INTRON Samuel	TF binding site mE1_TFBS_cad
3L	9502854	3L_9502854_DEL [dm3] 3L_9509754_DEL [dm6]	AATA	A	2.771e^-4	0.555	UPSTREAM CG3408 DOWNSTREAM RpS9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7947915	3L_7947915_SNP [dm3] 3L_7954815_SNP [dm6]	A	T	2.772e^-4	0.555	INTERGENIC
2L	3937284	2L_3937284_SNP [dm3] 2L_3937284_SNP [dm6]	A	C	2.779e^-4	0.555	INTRON fred
2L	5804255	2L_5804255_SNP [dm3] 2L_5804255_SNP [dm6]	T	G	2.782e^-4	0.555	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1678471	3L_1678471_SNP [dm3] 3L_1678471_SNP [dm6]	G	T	2.790e^-4	0.555	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	10958807	3L_10958807_SNP [dm3] 3L_10965707_SNP [dm6]	A	C	2.791e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	22027399	3L_22027399_SNP [dm3] 3L_22034299_SNP [dm6]	T	A	2.792e^-4	0.555	UPSTREAM Oct-TyrR INTERGENIC
X	19721574	X_19721574_SNP [dm3] X_19827541_SNP [dm6]	A	G	2.795e^-4	0.555	INTERGENIC
X	19721577	X_19721577_SNP [dm3] X_19827544_SNP [dm6]	A	C	2.795e^-4	0.555	INTERGENIC
3L	18447804	3L_18447804_SNP [dm3] 3L_18454704_SNP [dm6]	T	C	2.797e^-4	0.555	INTERGENIC
X	16622705	X_16622705_DEL [dm3] X_16728672_DEL [dm6]	CC	C	2.807e^-4	0.555	INTRON CG9634
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	2.810e^-4	0.555	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
X	15479915	X_15479915_SNP [dm3] X_15585882_SNP [dm6]	C	T	2.815e^-4	0.555	UTR_3_PRIME CG9220 DOWNSTREAM CG8097	TF binding site mE1_TFBS_cad
X	20464191	X_20464191_SNP [dm3] X_20593164_SNP [dm6]	T	A	2.816e^-4	0.555	INTRON RunxA
X	9869148	X_9869148_SNP [dm3] X_9975115_SNP [dm6]	T	A	2.819e^-4	0.555	INTRON CG43386
X	8509181	X_8509181_SNP [dm3] X_8615148_SNP [dm6]	G	T	2.820e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	10101236	3L_10101236_SNP [dm3] 3L_10108136_SNP [dm6]	A	T	2.822e^-4	0.555	INTRON dpr6
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	2.827e^-4	0.555	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2L	12207776	2L_12207776_SNP [dm3] 2L_12207776_SNP [dm6]	C	T	2.829e^-4	0.555	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
3R	12676555	3R_12676555_SNP [dm3] 3R_16850833_SNP [dm6]	C	G	2.831e^-4	0.555	INTRON iab-8 EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_Trl
3L	4137867	3L_4137867_SNP [dm3] 3L_4137867_SNP [dm6]	A	G	2.836e^-4	0.555	SYNONYMOUS_CODING Rop	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24105631	3R_24105631_SNP [dm3] 3R_28279909_SNP [dm6]	T	C	2.836e^-4	0.555	INTERGENIC
2L	3345001	2L_3345001_SNP [dm3] 2L_3345001_SNP [dm6]	G	A	2.836e^-4	0.555	INTRON E23
2L	5804505	2L_5804505_SNP [dm3] 2L_5804505_SNP [dm6]	G	A	2.840e^-4	0.555	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18436776	2R_18436776_SNP [dm3] 2R_22549271_SNP [dm6]	G	A	2.844e^-4	0.555	UPSTREAM CG6018 INTRON px
3L	3325869	3L_3325869_SNP [dm3] 3L_3325869_SNP [dm6]	C	T	2.848e^-4	0.555	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12799486	2R_12799486_SNP [dm3] 2R_16911981_SNP [dm6]	T	A	2.848e^-4	0.555	INTERGENIC
2L	14236346	2L_14236346_SNP [dm3] 2L_14236346_SNP [dm6]	A	T	2.852e^-4	0.555	DOWNSTREAM CR44728 INTERGENIC
2L	15303323	2L_15303323_SNP [dm3] 2L_15303323_SNP [dm6]	A	G	2.857e^-4	0.555	INTERGENIC
3L	3005773	3L_3005773_SNP [dm3] 3L_3005773_SNP [dm6]	A	T	2.860e^-4	0.555	INTRON FMRFaR
3R	13056343	3R_13056343_SNP [dm3] 3R_17230621_SNP [dm6]	C	T	2.864e^-4	0.555	INTERGENIC
2L	2372938	2L_2372938_SNP [dm3] 2L_2372938_SNP [dm6]	A	C	2.872e^-4	0.555	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20281059	X_20281059_SNP [dm3] X_20410032_SNP [dm6]	C	A	2.875e^-4	0.555	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4482292	3L_4482292_SNP [dm3] 3L_4482292_SNP [dm6]	G	C	2.878e^-4	0.555	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
X	22259043	X_22259043_SNP [dm3] X_22857207_SNP [dm6]	A	C	2.882e^-4	0.555	INTRON CG42346	TF binding site BDTNP1_TFBS_dl
2L	6405045	2L_6405045_SNP [dm3] 2L_6405045_SNP [dm6]	C	T	2.882e^-4	0.555	INTRON CG42368
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	2.883e^-4	0.555	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11033203	2L_11033203_SNP [dm3] 2L_11033203_SNP [dm6]	G	A	2.888e^-4	0.555	INTRON Samuel
3R	15195747	3R_15195747_SNP [dm3] 3R_19370025_SNP [dm6]	G	A	2.890e^-4	0.555	INTRON Ino80
2L	17860584	2L_17860584_SNP [dm3] 2L_17860584_SNP [dm6]	T	A	2.892e^-4	0.555	INTRON CadN2
3L	3107672	3L_3107672_INS [dm3] 3L_3107672_INS [dm6]	T	TACT	2.893e^-4	0.555	UPSTREAM Cht7 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	2.896e^-4	0.555	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3L	16334602	3L_16334602_SNP [dm3] 3L_16341502_SNP [dm6]	T	C	2.900e^-4	0.555	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9524237	X_9524237_SNP [dm3] X_9630204_SNP [dm6]	G	A	2.900e^-4	0.555	SYNONYMOUS_CODING l_1_G0232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16728162	2R_16728162_SNP [dm3] 2R_20840657_SNP [dm6]	T	C	2.903e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18399872	2R_18399872_SNP [dm3] 2R_22512367_SNP [dm6]	C	G	2.905e^-4	0.555	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	8927741	X_8927741_DEL [dm3] X_9033708_DEL [dm6]	CCA	C	2.909e^-4	0.555	INTRON CR43836 & 1 other
2L	13841943	2L_13841943_SNP [dm3] 2L_13841943_SNP [dm6]	G	A	2.909e^-4	0.555	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	2.916e^-4	0.555	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4791819	3R_4791819_INS [dm3] 3R_8966097_INS [dm6]	G	GCTATAAAC	2.916e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11881186	3L_11881186_SNP [dm3] 3L_11888086_SNP [dm6]	G	A	2.919e^-4	0.555	SYNONYMOUS_CODING CG5897 INTRON CG44837
2L	19271236	2L_19271236_SNP [dm3] 2L_19271236_SNP [dm6]	C	T	2.923e^-4	0.555	INTRON CR44190
X	7453920	X_7453920_SNP [dm3] X_7559887_SNP [dm6]	T	C	2.933e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	7321692	3R_7321692_SNP [dm3] 3R_11495970_SNP [dm6]	C	T	2.935e^-4	0.555	INTERGENIC
3R	5944856	3R_5944856_SNP [dm3] 3R_10119134_SNP [dm6]	A	G	2.938e^-4	0.555	NON_SYNONYMOUS_CODING CG3940
3R	13056299	3R_13056299_SNP [dm3] 3R_17230577_SNP [dm6]	T	C	2.945e^-4	0.555	INTERGENIC
3R	13056340	3R_13056340_SNP [dm3] 3R_17230618_SNP [dm6]	T	A	2.945e^-4	0.555	INTERGENIC
3L	18443827	3L_18443827_SNP [dm3] 3L_18450727_SNP [dm6]	A	C	2.945e^-4	0.555	INTERGENIC
X	15483057	X_15483057_SNP [dm3] X_15589024_SNP [dm6]	A	C	2.961e^-4	0.555	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11484811	2L_11484811_SNP [dm3] 2L_11484811_SNP [dm6]	G	A	2.963e^-4	0.555	UTR_5_PRIME sala & 1 other UPSTREAM CG43355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	7071239	3L_7071239_SNP [dm3] 3L_7078139_SNP [dm6]	T	A	2.964e^-4	0.555	UPSTREAM CG8641 INTERGENIC
3R	5014216	3R_5014216_SNP [dm3] 3R_9188494_SNP [dm6]	G	T	2.966e^-4	0.555	INTRON pum	TF binding site mE1_TFBS_inv
3R	12567270	3R_12567270_SNP [dm3] 3R_16741548_SNP [dm6]	G	C	2.971e^-4	0.555	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	18209772	3L_18209772_SNP [dm3] 3L_18216672_SNP [dm6]	C	G	2.972e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7172268	2L_7172268_SNP [dm3] 2L_7172268_SNP [dm6]	T	G	2.974e^-4	0.555	INTERGENIC
X	8406633	X_8406633_SNP [dm3] X_8512600_SNP [dm6]	C	T	2.977e^-4	0.555	SYNONYMOUS_CODING CG33181
3L	10027406	3L_10027406_SNP [dm3] 3L_10034306_SNP [dm6]	G	C	2.981e^-4	0.555	INTRON dpr6
3L	8575681	3L_8575681_SNP [dm3] 3L_8582581_SNP [dm6]	G	A	2.987e^-4	0.555	UPSTREAM CG43078 INTRON CG43078
3R	23813217	3R_23813217_SNP [dm3] 3R_27987495_SNP [dm6]	A	T	2.988e^-4	0.555	INTRON betaTub97EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12652599	3R_12652599_SNP [dm3] 3R_16826877_SNP [dm6]	G	C	2.991e^-4	0.555	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	1605916	3L_1605916_SNP [dm3] 3L_1605916_SNP [dm6]	G	A	2.993e^-4	0.555	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170
3R	453965	3R_453965_SNP [dm3] 3R_4628243_SNP [dm6]	T	C	2.996e^-4	0.555	NON_SYNONYMOUS_CODING 5-HT2A	TF binding site mE1_TFBS_inv
2R	15818415	2R_15818415_SNP [dm3] 2R_19930910_SNP [dm6]	A	G	2.996e^-4	0.555	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12442350	2R_12442350_SNP [dm3] 2R_16554845_SNP [dm6]	G	C	2.997e^-4	0.555	SYNONYMOUS_CODING Syn2
2L	10516303	2L_10516303_SNP [dm3] 2L_10516303_SNP [dm6]	A	C	2.998e^-4	0.555	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	4563057	2L_4563057_SNP [dm3] 2L_4563057_SNP [dm6]	T	C	3.003e^-4	0.555	INTRON dp	TF binding site mE1_TFBS_cad
3R	17682784	3R_17682784_SNP [dm3] 3R_21857062_SNP [dm6]	G	C	3.004e^-4	0.555	UPSTREAM glec INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	3.004e^-4	0.555	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	12287154	X_12287154_SNP [dm3] X_12393121_SNP [dm6]	G	A	3.010e^-4	0.555	INTERGENIC
2L	9781948	2L_9781948_SNP [dm3] 2L_9781948_SNP [dm6]	G	A	3.011e^-4	0.555	UPSTREAM IP3K1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	12107452	X_12107452_SNP [dm3] X_12213419_SNP [dm6]	A	T	3.013e^-4	0.555	INTRON Ten-a
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	3.018e^-4	0.555	INTRON CG1213
X	7472622	X_7472622_SNP [dm3] X_7578589_SNP [dm6]	T	C	3.018e^-4	0.555	INTERGENIC	regulatory region REDfly_CRMs
2L	8880090	2L_8880090_SNP [dm3] 2L_8880090_SNP [dm6]	T	A	3.022e^-4	0.555	INTERGENIC
2L	10516298	2L_10516298_SNP [dm3] 2L_10516298_SNP [dm6]	C	G	3.022e^-4	0.555	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	7811976	3R_7811976_SNP [dm3] 3R_11986254_SNP [dm6]	A	G	3.025e^-4	0.555	INTRON mfas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA

Missing results

By genomic position
Variant impact
Gene name

pc_SegregVariants_X phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results