DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.695e^-15)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3213 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	9469433	2L_9469433_SNP [dm3] 2L_9469433_SNP [dm6]	C	T	5.384e^-8	0.09	UPSTREAM CR43769 INTERGENIC
3L	12377573	3L_12377573_INS [dm3] 3L_12384473_INS [dm6]	T	TGGTGCATGTAAGTACGTGA...	9.560e^-8	0.09	INTRON Ncc69
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	2.809e^-7	0.1	INTRON CG43386
3L	18213459	3L_18213459_DEL [dm3] 3L_18220359_DEL [dm6]	GAACCA	G	3.198e^-7	0.1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213468	3L_18213468_SNP [dm3] 3L_18220368_SNP [dm6]	A	G	3.198e^-7	0.1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	18213472	3L_18213472_SNP [dm3] 3L_18220372_SNP [dm6]	T	A	3.198e^-7	0.1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	12377557	3L_12377557_SNP [dm3] 3L_12384457_SNP [dm6]	A	T	4.601e^-7	0.119	INTRON Ncc69
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	5.072e^-7	0.119	INTRON Ggamma30A
2L	9280130	2L_9280130_SNP [dm3] 2L_9280130_SNP [dm6]	A	T	6.102e^-7	0.127	INTRON Ggamma30A
3L	8606750	3L_8606750_SNP [dm3] 3L_8613650_SNP [dm6]	C	T	8.565e^-7	0.158	SPLICE_SITE_REGION CG6282 INTRON CG6282
X	7489772	X_7489772_SNP [dm3] X_7595739_SNP [dm6]	T	A	9.270e^-7	0.158	INTERGENIC	regulatory region REDfly_CRMs
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	1.139e^-6	0.178	UTR_3_PRIME CG18208
2L	8892181	2L_8892181_SNP [dm3] 2L_8892181_SNP [dm6]	C	T	1.557e^-6	0.225	DOWNSTREAM CG42713 INTERGENIC
3L	12377542	3L_12377542_SNP [dm3] 3L_12384442_SNP [dm6]	G	A	1.860e^-6	0.239	INTRON Ncc69
3L	5238270	3L_5238270_SNP [dm3] 3L_5245170_SNP [dm6]	A	G	1.909e^-6	0.239	INTRON shep
2R	18436654	2R_18436654_SNP [dm3] 2R_22549149_SNP [dm6]	C	A	2.229e^-6	0.25	UPSTREAM CG6018 INTRON px
2L	8893211	2L_8893211_SNP [dm3] 2L_8893211_SNP [dm6]	G	A	2.525e^-6	0.25	INTERGENIC
X	19158603	X_19158603_DEL [dm3] X_19264570_DEL [dm6]	TCCTATCTCTGTCT...	T	2.556e^-6	0.25	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10461455	2L_10461455_SNP [dm3] 2L_10461455_SNP [dm6]	T	C	2.661e^-6	0.25	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
2L	9280115	2L_9280115_SNP [dm3] 2L_9280115_SNP [dm6]	A	T	2.757e^-6	0.25	INTRON Ggamma30A
3R	1264742	3R_1264742_SNP [dm3] 3R_5439020_SNP [dm6]	T	C	2.836e^-6	0.25	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
X	19158571	X_19158571_SNP [dm3] X_19264538_SNP [dm6]	T	A	3.030e^-6	0.25	INTRON Vav	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10280202	X_10280202_DEL [dm3] X_10386169_DEL [dm6]	TT	T	3.104e^-6	0.25	UTR_5_PRIME flw UPSTREAM Psf3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18439022	2R_18439022_SNP [dm3] 2R_22551517_SNP [dm6]	T	C	3.202e^-6	0.25	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12377544	3L_12377544_SNP [dm3] 3L_12384444_SNP [dm6]	T	A	3.562e^-6	0.263	INTRON Ncc69
3L	1679278	3L_1679278_SNP [dm3] 3L_1679278_SNP [dm6]	A	C	3.648e^-6	0.263	INTRON CG7991
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	4.032e^-6	0.276	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3R	7174174	3R_7174174_SNP [dm3] 3R_11348452_SNP [dm6]	A	G	4.127e^-6	0.276	UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	5806748	2L_5806748_SNP [dm3] 2L_5806748_SNP [dm6]	A	G	4.557e^-6	0.288	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8891353	2L_8891353_SNP [dm3] 2L_8891353_SNP [dm6]	T	G	4.704e^-6	0.288	UPSTREAM CG42713 INTERGENIC
3L	19439891	3L_19439891_SNP [dm3] 3L_19446791_SNP [dm6]	G	A	4.837e^-6	0.288	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18213458	3L_18213458_SNP [dm3] 3L_18220358_SNP [dm6]	G	T	4.920e^-6	0.288	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
X	11237150	X_11237150_INS [dm3] X_11343117_INS [dm6]	T	TT	5.447e^-6	0.306	INTRON CG34348
3L	18213474	3L_18213474_SNP [dm3] 3L_18220374_SNP [dm6]	C	G	5.540e^-6	0.306	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	5.735e^-6	0.307	UTR_3_PRIME CG18208
X	15452358	X_15452358_SNP [dm3] X_15558325_SNP [dm6]	T	G	5.923e^-6	0.309	INTERGENIC
X	10381386	X_10381386_SNP [dm3] X_10487353_SNP [dm6]	C	A	6.314e^-6	0.319	UPSTREAM CG32687 INTERGENIC
2L	9280177	2L_9280177_SNP [dm3] 2L_9280177_SNP [dm6]	A	G	6.784e^-6	0.319	INTRON Ggamma30A
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	6.823e^-6	0.319	UTR_3_PRIME CG18208
3R	27458721	3R_27458721_SNP [dm3] 3R_31632999_SNP [dm6]	A	G	6.966e^-6	0.319	INTRON kek6
X	17746469	X_17746469_SNP [dm3] X_17852436_SNP [dm6]	C	T	6.977e^-6	0.319	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7063426	2L_7063426_SNP [dm3] 2L_7063426_SNP [dm6]	A	T	7.257e^-6	0.32	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
X	5364874	X_5364874_SNP [dm3] X_5470841_SNP [dm6]	C	T	7.440e^-6	0.32	INTRON SPR
3L	8606061	3L_8606061_SNP [dm3] 3L_8612961_SNP [dm6]	C	T	8.086e^-6	0.32	INTRON CG6282
X	2365996	X_2365996_SNP [dm3] X_2471963_SNP [dm6]	A	C	8.156e^-6	0.32	INTRON trol
3L	2580216	3L_2580216_SNP [dm3] 3L_2580216_SNP [dm6]	C	T	8.190e^-6	0.32	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5364846	X_5364846_SNP [dm3] X_5470813_SNP [dm6]	T	C	8.592e^-6	0.32	INTRON SPR
2L	9280160	2L_9280160_SNP [dm3] 2L_9280160_SNP [dm6]	T	A	8.739e^-6	0.32	INTRON Ggamma30A
X	16095942	X_16095942_SNP [dm3] X_16201909_SNP [dm6]	A	T	8.773e^-6	0.32	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	8.786e^-6	0.32	INTRON alpha-Man-I
2L	11485213	2L_11485213_SNP [dm3] 2L_11485213_SNP [dm6]	A	G	8.873e^-6	0.32	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19439872	3L_19439872_SNP [dm3] 3L_19446772_SNP [dm6]	G	A	8.892e^-6	0.32	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15800951	2L_15800951_SNP [dm3] 2L_15800951_SNP [dm6]	G	A	9.254e^-6	0.32	INTERGENIC
3R	5140182	3R_5140182_SNP [dm3] 3R_9314460_SNP [dm6]	G	T	9.350e^-6	0.32	INTRON CG8861
3R	1266966	3R_1266966_SNP [dm3] 3R_5441244_SNP [dm6]	C	T	9.559e^-6	0.32	INTRON CG14669
2L	8096361	2L_8096361_INS [dm3] 2L_8096361_INS [dm6]	C	CGGTTTTCTTTAAAT...	9.564e^-6	0.32	INTRON Bsg
X	7480202	X_7480202_SNP [dm3] X_7586169_SNP [dm6]	A	G	9.879e^-6	0.323	UPSTREAM CG12689 INTERGENIC	regulatory region REDfly_CRMs
2L	11485212	2L_11485212_SNP [dm3] 2L_11485212_SNP [dm6]	C	T	9.985e^-6	0.323	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16129102	X_16129102_SNP [dm3] X_16235069_SNP [dm6]	G	A	1.025e^-5	0.326	INTERGENIC
3L	1773058	3L_1773058_SNP [dm3] 3L_1773058_SNP [dm6]	C	T	1.054e^-5	0.329	SYNONYMOUS_CODING CG13933 UPSTREAM CR44351	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9416993	2L_9416993_SNP [dm3] 2L_9416993_SNP [dm6]	T	A	1.137e^-5	0.347	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2834652	3L_2834652_SNP [dm3] 3L_2834652_SNP [dm6]	G	A	1.146e^-5	0.347	INTRON CG43444
X	20023391	X_20023391_SNP [dm3] X_20129358_SNP [dm6]	T	A	1.209e^-5	0.36	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9281645	2L_9281645_INS [dm3] 2L_9281645_INS [dm6]	T	TAAATA	1.245e^-5	0.363	INTRON Ggamma30A
3L	17683823	3L_17683823_SNP [dm3] 3L_17690723_SNP [dm6]	T	C	1.279e^-5	0.363	INTRON Ccn
3R	16175110	3R_16175110_SNP [dm3] 3R_20349388_SNP [dm6]	C	T	1.286e^-5	0.363	INTERGENIC
3R	7224260	3R_7224260_SNP [dm3] 3R_11398538_SNP [dm6]	C	A	1.335e^-5	0.363	UTR_3_PRIME pros
2L	9812088	2L_9812088_SNP [dm3] 2L_9812088_SNP [dm6]	A	C	1.341e^-5	0.363	INTRON nAChRalpha6
X	17741219	X_17741219_SNP [dm3] X_17847186_SNP [dm6]	C	T	1.379e^-5	0.363	SYNONYMOUS_CODING Ucp4A UTR_3_PRIME Ucp4A DOWNSTREAM CG15814	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17693891	X_17693891_SNP [dm3] X_17799858_SNP [dm6]	A	T	1.388e^-5	0.363	INTRON OdsH	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25002934	3R_25002934_SNP [dm3] 3R_29177212_SNP [dm6]	C	A	1.395e^-5	0.363	INTRON CG14509
2L	15337740	2L_15337740_SNP [dm3] 2L_15337740_SNP [dm6]	C	T	1.406e^-5	0.363	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23852615	3R_23852615_SNP [dm3] 3R_28026893_SNP [dm6]	C	T	1.414e^-5	0.363	INTRON CG34362
X	11737371	X_11737371_SNP [dm3] X_11843338_SNP [dm6]	T	C	1.439e^-5	0.365	SYNONYMOUS_CODING CG15740	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5410565	3R_5410565_SNP [dm3] 3R_9584843_SNP [dm6]	G	T	1.483e^-5	0.371	INTRON CG8301	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17750806	X_17750806_SNP [dm3] X_17856773_SNP [dm6]	G	C	1.525e^-5	0.376	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	15317157	2L_15317157_SNP [dm3] 2L_15317157_SNP [dm6]	G	A	1.586e^-5	0.386	DOWNSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	18197816	2R_18197816_SNP [dm3] 2R_22310311_SNP [dm6]	G	T	1.642e^-5	0.39	UPSTREAM wdp INTRON wdp
2R	11965490	2R_11965490_SNP [dm3] 2R_16077985_SNP [dm6]	C	T	1.644e^-5	0.39	DOWNSTREAM CR43415 INTERGENIC
3R	7098803	3R_7098803_SNP [dm3] 3R_11273081_SNP [dm6]	C	A	1.727e^-5	0.405	INTRON CR31386
2R	14072994	2R_14072994_SNP [dm3] 2R_18185489_SNP [dm6]	G	C	1.792e^-5	0.412	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2835271	3L_2835271_SNP [dm3] 3L_2835271_SNP [dm6]	T	A	1.802e^-5	0.412	INTRON CG43444
3L	2570088	3L_2570088_SNP [dm3] 3L_2570088_SNP [dm6]	C	T	1.900e^-5	0.422	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14441430	X_14441430_SNP [dm3] X_14547397_SNP [dm6]	A	T	1.913e^-5	0.422	INTERGENIC
2L	2182252	2L_2182252_SNP [dm3] 2L_2182252_SNP [dm6]	C	T	1.986e^-5	0.422	EXON CR43751	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27081378	3R_27081378_SNP [dm3] 3R_31255656_SNP [dm6]	C	A	1.994e^-5	0.422	SYNONYMOUS_CODING spn-F UPSTREAM CG1750	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19297289	X_19297289_SNP [dm3] X_19403256_SNP [dm6]	G	A	2.027e^-5	0.422	INTRON kek5
3R	16410331	3R_16410331_SNP [dm3] 3R_20584609_SNP [dm6]	G	A	2.033e^-5	0.422	INTRON CG16953
3R	13723550	3R_13723550_INS [dm3] 3R_17897828_INS [dm6]	G	GGA	2.043e^-5	0.422	INTRON Rim
2L	9415587	2L_9415587_SNP [dm3] 2L_9415587_SNP [dm6]	T	A	2.059e^-5	0.422	UPSTREAM Shawl INTERGENIC
2L	5971092	2L_5971092_SNP [dm3] 2L_5971092_SNP [dm6]	C	T	2.067e^-5	0.422	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
X	3008258	X_3008258_SNP [dm3] X_3114225_SNP [dm6]	T	A	2.069e^-5	0.422	INTRON kirre
3R	12697709	3R_12697709_SNP [dm3] 3R_16871987_SNP [dm6]	A	C	2.123e^-5	0.428	INTRON iab-8	TF binding site mE1_TFBS_cad
2L	15348697	2L_15348697_SNP [dm3] 2L_15348697_SNP [dm6]	C	T	2.146e^-5	0.428	INTERGENIC
2L	930406	2L_930406_SNP [dm3] 2L_930406_SNP [dm6]	T	C	2.208e^-5	0.43	SYNONYMOUS_CODING CG4341 INTRON CG4341
X	12332193	X_12332193_SNP [dm3] X_12438160_SNP [dm6]	C	A	2.235e^-5	0.43	INTRON Pkcdelta
2L	17973589	2L_17973589_SNP [dm3] 2L_17973589_SNP [dm6]	G	C	2.253e^-5	0.43	UTR_3_PRIME CG5674 INTRON btv
3R	5919522	3R_5919522_SNP [dm3] 3R_10093800_SNP [dm6]	T	C	2.345e^-5	0.43	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23682129	3R_23682129_SNP [dm3] 3R_27856407_SNP [dm6]	T	G	2.355e^-5	0.43	INTRON CG34353	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv
3R	12678228	3R_12678228_SNP [dm3] 3R_16852506_SNP [dm6]	G	C	2.386e^-5	0.43	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3800402	3L_3800402_SNP [dm3] 3L_3800402_SNP [dm6]	T	G	2.398e^-5	0.43	NON_SYNONYMOUS_CODING CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16086048	2R_16086048_SNP [dm3] 2R_20198543_SNP [dm6]	G	T	2.439e^-5	0.43	INTERGENIC
3R	5995489	3R_5995489_SNP [dm3] 3R_10169767_SNP [dm6]	G	T	2.456e^-5	0.43	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	15897786	3L_15897786_SNP [dm3] 3L_15904686_SNP [dm6]	C	T	2.479e^-5	0.43	INTRON sff
2L	5804599	2L_5804599_SNP [dm3] 2L_5804599_SNP [dm6]	G	C	2.499e^-5	0.43	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27232351	3R_27232351_SNP [dm3] 3R_31406629_SNP [dm6]	G	A	2.502e^-5	0.43	INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19156906	X_19156906_SNP [dm3] X_19262873_SNP [dm6]	T	A	2.532e^-5	0.43	INTRON Vav	TF binding site BDTNP1_TFBS_dl
2L	8887520	2L_8887520_SNP [dm3] 2L_8887520_SNP [dm6]	T	C	2.573e^-5	0.43	EXON CR44415	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
X	12646171	X_12646171_SNP [dm3] X_12752138_SNP [dm6]	C	T	2.577e^-5	0.43	EXON CR44619	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	5749736	3R_5749736_SNP [dm3] 3R_9924014_SNP [dm6]	G	T	2.591e^-5	0.43	INTRON Glut4EF
3L	18460729	3L_18460729_SNP [dm3] 3L_18467629_SNP [dm6]	C	A	2.600e^-5	0.43	INTERGENIC
3L	18444670	3L_18444670_SNP [dm3] 3L_18451570_SNP [dm6]	G	A	2.617e^-5	0.43	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5805181	2L_5805181_SNP [dm3] 2L_5805181_SNP [dm6]	G	T	2.620e^-5	0.43	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	18154327	X_18154327_SNP [dm3] X_18260294_SNP [dm6]	A	G	2.620e^-5	0.43	UPSTREAM CG15059 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13977559	X_13977559_SNP [dm3] X_14083526_SNP [dm6]	T	A	2.636e^-5	0.43	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5817267	3R_5817267_SNP [dm3] 3R_9991545_SNP [dm6]	T	C	2.774e^-5	0.438	UTR_3_PRIME Glut4EF
3R	5817268	3R_5817268_SNP [dm3] 3R_9991546_SNP [dm6]	A	T	2.774e^-5	0.438	UTR_3_PRIME Glut4EF
3R	5749737	3R_5749737_SNP [dm3] 3R_9924015_SNP [dm6]	T	A	2.812e^-5	0.438	INTRON Glut4EF
3L	18444671	3L_18444671_SNP [dm3] 3L_18451571_SNP [dm6]	T	C	2.818e^-5	0.438	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5832316	3R_5832316_SNP [dm3] 3R_10006594_SNP [dm6]	A	G	2.820e^-5	0.438	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	2.841e^-5	0.438	INTERGENIC
2L	12188129	2L_12188129_SNP [dm3] 2L_12188129_SNP [dm6]	C	A	2.848e^-5	0.438	INTRON aret
3R	4793654	3R_4793654_SNP [dm3] 3R_8967932_SNP [dm6]	C	A	2.888e^-5	0.44	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14326965	2L_14326965_SNP [dm3] 2L_14326965_SNP [dm6]	C	T	2.922e^-5	0.441	SYNONYMOUS_CODING wb DOWNSTREAM wb
X	22326665	X_22326665_SNP [dm3] X_22924829_SNP [dm6]	G	C	2.965e^-5	0.441	INTERGENIC	transposable element FlyBase
2R	14073082	2R_14073082_SNP [dm3] 2R_18185577_SNP [dm6]	G	A	2.982e^-5	0.441	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14357930	2R_14357930_SNP [dm3] 2R_18470425_SNP [dm6]	A	G	2.992e^-5	0.441	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15348712	2L_15348712_INS [dm3] 2L_15348712_INS [dm6]	G	AA	3.008e^-5	0.441	INTERGENIC
X	15479466	X_15479466_SNP [dm3] X_15585433_SNP [dm6]	A	G	3.036e^-5	0.441	UTR_3_PRIME CG9220 DOWNSTREAM CG8097
2L	10461467	2L_10461467_SNP [dm3] 2L_10461467_SNP [dm6]	C	T	3.074e^-5	0.443	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3L	18449758	3L_18449758_SNP [dm3] 3L_18456658_SNP [dm6]	T	A	3.163e^-5	0.453	DOWNSTREAM CR44671 EXON CR44670
2L	346273	2L_346273_SNP [dm3] 2L_346273_SNP [dm6]	T	A	3.244e^-5	0.454	UTR_3_PRIME Plc21C DOWNSTREAM Plc21C	TF binding site BDTNP1_TFBS_dl
3R	2102752	3R_2102752_SNP [dm3] 3R_6277030_SNP [dm6]	G	A	3.248e^-5	0.454	INTERGENIC
X	2837572	X_2837572_SNP [dm3] X_2943539_SNP [dm6]	G	A	3.260e^-5	0.454	INTRON kirre & 1 other
3R	12678164	3R_12678164_SNP [dm3] 3R_16852442_SNP [dm6]	G	A	3.304e^-5	0.454	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9897640	3L_9897640_INS [dm3] 3L_9904540_INS [dm6]	T	TA	3.335e^-5	0.454	INTERGENIC
X	16707826	X_16707826_SNP [dm3] X_16813793_SNP [dm6]	T	C	3.340e^-5	0.454	INTRON CG4829
3R	23791139	3R_23791139_SNP [dm3] 3R_27965417_SNP [dm6]	C	T	3.369e^-5	0.454	SYNONYMOUS_CODING CG4849	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	15327837	X_15327837_SNP [dm3] X_15433804_SNP [dm6]	C	G	3.393e^-5	0.454	INTRON Cngl
2L	14535419	2L_14535419_SNP [dm3] 2L_14535419_SNP [dm6]	C	T	3.437e^-5	0.454	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3929737	2L_3929737_SNP [dm3] 2L_3929737_SNP [dm6]	A	G	3.448e^-5	0.454	INTRON fred
3L	18473922	3L_18473922_SNP [dm3] 3L_18480822_SNP [dm6]	A	T	3.459e^-5	0.454	INTERGENIC
2R	5259817	2R_5259817_SNP [dm3] 2R_9372312_SNP [dm6]	G	T	3.472e^-5	0.454	SPLICE_SITE_REGION CG13954 INTRON CG13954	TF binding site mE1_TFBS_chinmo
2L	3929748	2L_3929748_SNP [dm3] 2L_3929748_SNP [dm6]	G	T	3.483e^-5	0.454	INTRON fred
X	8554897	X_8554897_SNP [dm3] X_8660864_SNP [dm6]	T	A	3.513e^-5	0.454	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
2R	18438479	2R_18438479_SNP [dm3] 2R_22550974_SNP [dm6]	C	T	3.567e^-5	0.457	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2391181	3L_2391181_SNP [dm3] 3L_2391181_SNP [dm6]	T	A	3.582e^-5	0.457	UPSTREAM CG32299 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	7489936	X_7489936_SNP [dm3] X_7595903_SNP [dm6]	G	A	3.672e^-5	0.461	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Kr
X	19428795	X_19428795_SNP [dm3] X_19534762_SNP [dm6]	T	G	3.681e^-5	0.461	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3R	27245947	3R_27245947_SNP [dm3] 3R_31420225_SNP [dm6]	A	G	3.695e^-5	0.461	INTRON Gprk2
2L	8096349	2L_8096349_DEL [dm3] 2L_8096349_DEL [dm6]	CCACAGGAGA	T	3.752e^-5	0.461	INTRON Bsg
3L	14138191	3L_14138191_SNP [dm3] 3L_14145091_SNP [dm6]	A	T	3.856e^-5	0.461	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	7100702	3R_7100702_SNP [dm3] 3R_11274980_SNP [dm6]	C	T	3.868e^-5	0.461	INTRON CR31386
2L	17973665	2L_17973665_SNP [dm3] 2L_17973665_SNP [dm6]	T	C	3.892e^-5	0.461	UTR_3_PRIME CG5674 INTRON btv	transposable element FlyBase
3L	8609287	3L_8609287_SNP [dm3] 3L_8616187_SNP [dm6]	G	A	3.939e^-5	0.461	UTR_3_PRIME CG6282
2R	17045286	2R_17045286_SNP [dm3] 2R_21157781_SNP [dm6]	T	C	3.946e^-5	0.461	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2L	292156	2L_292156_SNP [dm3] 2L_292156_SNP [dm6]	C	T	4.042e^-5	0.461	UPSTREAM CG11562 & 1 other DOWNSTREAM U2af38 INTERGENIC
3L	18460323	3L_18460323_SNP [dm3] 3L_18467223_SNP [dm6]	T	C	4.052e^-5	0.461	INTERGENIC
2L	11025008	2L_11025008_DEL [dm3] 2L_11025008_DEL [dm6]	CTAATTCCGTTTTTCCCAAC...	C	4.052e^-5	0.461	INTRON Samuel
X	19159390	X_19159390_SNP [dm3] X_19265357_SNP [dm6]	T	C	4.102e^-5	0.461	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2028644	2L_2028644_SNP [dm3] 2L_2028644_SNP [dm6]	C	T	4.115e^-5	0.461	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad
2R	16162926	2R_16162926_SNP [dm3] 2R_20275421_SNP [dm6]	C	A	4.121e^-5	0.461	SYNONYMOUS_CODING CG11788 UPSTREAM CG10444 DOWNSTREAM CG9143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4503688	2L_4503688_SNP [dm3] 2L_4503688_SNP [dm6]	C	G	4.148e^-5	0.461	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5238268	3L_5238268_SNP [dm3] 3L_5245168_SNP [dm6]	G	T	4.172e^-5	0.461	INTRON shep
X	9486231	X_9486231_SNP [dm3] X_9592198_SNP [dm6]	A	C	4.189e^-5	0.461	INTERGENIC
2L	9281728	2L_9281728_SNP [dm3] 2L_9281728_SNP [dm6]	T	C	4.210e^-5	0.461	INTRON Ggamma30A
3L	9348973	3L_9348973_SNP [dm3] 3L_9355873_SNP [dm6]	A	T	4.237e^-5	0.461	DOWNSTREAM CG32040 INTRON UGP
3L	6513601	3L_6513601_SNP [dm3] 3L_6520501_SNP [dm6]	C	A	4.262e^-5	0.461	INTRON sfl
3R	1291319	3R_1291319_SNP [dm3] 3R_5465597_SNP [dm6]	C	A	4.269e^-5	0.461	UPSTREAM PEK DOWNSTREAM RpL35A INTERGENIC
3L	21526995	3L_21526995_SNP [dm3] 3L_21533895_SNP [dm6]	C	T	4.289e^-5	0.461	UPSTREAM ppk5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17045275	2R_17045275_SNP [dm3] 2R_21157770_SNP [dm6]	A	G	4.292e^-5	0.461	INTRON CG30389	TF binding site BDTNP1_TFBS_twi
2L	1030565	2L_1030565_SNP [dm3] 2L_1030565_SNP [dm6]	G	A	4.441e^-5	0.461	INTRON IA-2
2R	18836445	2R_18836445_SNP [dm3] 2R_22948922_SNP [dm6]	G	T	4.442e^-5	0.461	INTERGENIC
2L	8891550	2L_8891550_SNP [dm3] 2L_8891550_SNP [dm6]	C	T	4.469e^-5	0.461	NON_SYNONYMOUS_CODING CG42713
2L	15319276	2L_15319276_SNP [dm3] 2L_15319276_SNP [dm6]	G	A	4.474e^-5	0.461	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6377929	3R_6377929_SNP [dm3] 3R_10552207_SNP [dm6]	A	C	4.480e^-5	0.461	INTRON hth
3L	16553930	3L_16553930_SNP [dm3] 3L_16560830_SNP [dm6]	C	T	4.513e^-5	0.461	INTERGENIC
3L	16553942	3L_16553942_SNP [dm3] 3L_16560842_SNP [dm6]	C	A	4.535e^-5	0.461	INTERGENIC
3L	13072190	3L_13072190_SNP [dm3] 3L_13079090_SNP [dm6]	A	T	4.537e^-5	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7489471	X_7489471_INS [dm3] X_7595438_INS [dm6]	TT	AAA	4.588e^-5	0.461	INTERGENIC	regulatory region REDfly_CRMs
2L	8304209	2L_8304209_SNP [dm3] 2L_8304209_SNP [dm6]	A	G	4.617e^-5	0.461	SYNONYMOUS_CODING Scgalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13533223	2L_13533223_INS [dm3] 2L_13533223_INS [dm6]	A	AGTA	4.645e^-5	0.461	DOWNSTREAM CG33644 INTRON B4 & 1 other
3L	9889000	3L_9889000_DEL [dm3] 3L_9895900_DEL [dm6]	CAC	C	4.676e^-5	0.461	INTRON CG6707
3L	1196836	3L_1196836_INS [dm3] 3L_1196836_INS [dm6]	T	TCCAGAT	4.682e^-5	0.461	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2373367	2L_2373367_SNP [dm3] 2L_2373367_SNP [dm6]	C	T	4.710e^-5	0.461	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12308561	3L_12308561_SNP [dm3] 3L_12315461_SNP [dm6]	A	C	4.717e^-5	0.461	INTERGENIC
X	17747907	X_17747907_SNP [dm3] X_17853874_SNP [dm6]	T	C	4.806e^-5	0.461	NON_SYNONYMOUS_CODING CG32557	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18542590	3R_18542590_SNP [dm3] 3R_22716868_SNP [dm6]	T	A	4.821e^-5	0.461	INTRON wge	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18513015	2R_18513015_SNP [dm3] 2R_22625510_SNP [dm6]	C	T	4.823e^-5	0.461	INTRON CG33143
2L	7567530	2L_7567530_SNP [dm3] 2L_7567530_SNP [dm6]	T	A	4.850e^-5	0.461	INTRON RapGAP1
2L	9812092	2L_9812092_SNP [dm3] 2L_9812092_SNP [dm6]	C	G	4.906e^-5	0.461	INTRON nAChRalpha6
2R	19828103	2R_19828103_SNP [dm3] 2R_23940580_SNP [dm6]	T	G	4.924e^-5	0.461	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5805164	2L_5805164_SNP [dm3] 2L_5805164_SNP [dm6]	C	A	4.937e^-5	0.461	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4488587	2L_4488587_SNP [dm3] 2L_4488587_SNP [dm6]	A	C	4.954e^-5	0.461	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17139980	2R_17139980_SNP [dm3] 2R_21252475_SNP [dm6]	G	A	4.961e^-5	0.461	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	4.998e^-5	0.461	INTRON Ggamma30A
3L	18460309	3L_18460309_SNP [dm3] 3L_18467209_SNP [dm6]	A	G	5.018e^-5	0.461	INTERGENIC
3R	2210499	3R_2210499_SNP [dm3] 3R_6384777_SNP [dm6]	A	G	5.041e^-5	0.461	INTRON godzilla
3L	2945764	3L_2945764_SNP [dm3] 3L_2945764_SNP [dm6]	C	G	5.052e^-5	0.461	UTR_3_PRIME Shab INTRON Shab	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21527855	3L_21527855_SNP [dm3] 3L_21534755_SNP [dm6]	C	T	5.056e^-5	0.461	SYNONYMOUS_CODING ppk5	TF binding site mE1_TFBS_inv
3L	21532576	3L_21532576_SNP [dm3] 3L_21539476_SNP [dm6]	T	G	5.056e^-5	0.461	UPSTREAM VhaM9.7-b & 1 other DOWNSTREAM Rpn10 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	21547143	3L_21547143_SNP [dm3] 3L_21554043_SNP [dm6]	C	T	5.056e^-5	0.461	NON_SYNONYMOUS_CODING Wnk
2L	3937233	2L_3937233_SNP [dm3] 2L_3937233_SNP [dm6]	A	G	5.082e^-5	0.461	INTRON fred
3R	23847084	3R_23847084_SNP [dm3] 3R_28021362_SNP [dm6]	T	A	5.085e^-5	0.461	INTERGENIC
2L	5403059	2L_5403059_SNP [dm3] 2L_5403059_SNP [dm6]	C	A	5.125e^-5	0.461	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14592781	3L_14592781_SNP [dm3] 3L_14599681_SNP [dm6]	G	T	5.144e^-5	0.461	UPSTREAM HGTX INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24085950	3R_24085950_SNP [dm3] 3R_28260228_SNP [dm6]	C	A	5.152e^-5	0.461	INTERGENIC
2L	5805482	2L_5805482_SNP [dm3] 2L_5805482_SNP [dm6]	C	T	5.176e^-5	0.461	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	11485199	2L_11485199_SNP [dm3] 2L_11485199_SNP [dm6]	T	C	5.183e^-5	0.461	UTR_5_PRIME CG43355 & 1 other UPSTREAM sala	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18027276	2L_18027276_SNP [dm3] 2L_18027276_SNP [dm6]	A	C	5.189e^-5	0.461	INTRON rdo
2L	8888053	2L_8888053_SNP [dm3] 2L_8888053_SNP [dm6]	T	A	5.191e^-5	0.461	UPSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19824527	3L_19824527_SNP [dm3] 3L_19831427_SNP [dm6]	T	G	5.229e^-5	0.463	UTR_3_PRIME trc DOWNSTREAM Deaf1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5805167	2L_5805167_SNP [dm3] 2L_5805167_SNP [dm6]	G	A	5.305e^-5	0.463	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	10635080	X_10635080_SNP [dm3] X_10741047_SNP [dm6]	C	T	5.335e^-5	0.463	INTRON CG32676	TF binding site BDTNP1_TFBS_dl
3L	4446730	3L_4446730_SNP [dm3] 3L_4446730_SNP [dm6]	T	C	5.349e^-5	0.463	UPSTREAM CR45739 INTRON CG12607
3L	3933967	3L_3933967_SNP [dm3] 3L_3933967_SNP [dm6]	A	C	5.371e^-5	0.463	UPSTREAM Eip63F-1 & 1 other INTRON Eip63F-1
X	3466507	X_3466507_SNP [dm3] X_3572474_SNP [dm6]	A	G	5.381e^-5	0.463	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8	TF binding site mE1_TFBS_sens
2L	8888978	2L_8888978_SNP [dm3] 2L_8888978_SNP [dm6]	A	G	5.383e^-5	0.463	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk
3L	3881124	3L_3881124_SNP [dm3] 3L_3881124_SNP [dm6]	A	G	5.468e^-5	0.468	INTERGENIC
3L	7002708	3L_7002708_SNP [dm3] 3L_7009608_SNP [dm6]	T	C	5.518e^-5	0.469	INTRON Mp
3L	2800477	3L_2800477_SNP [dm3] 3L_2800477_SNP [dm6]	G	A	5.572e^-5	0.469	INTRON CG43444	TF binding site mE1_TFBS_inv
3R	23776488	3R_23776488_SNP [dm3] 3R_27950766_SNP [dm6]	T	A	5.574e^-5	0.469	INTRON Gp93
2L	8888771	2L_8888771_SNP [dm3] 2L_8888771_SNP [dm6]	T	A	5.625e^-5	0.469	UPSTREAM CR44415 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
X	12239910	X_12239910_SNP [dm3] X_12345877_SNP [dm6]	C	T	5.638e^-5	0.469	INTERGENIC
X	19926869	X_19926869_INS [dm3] X_20032836_INS [dm6]	T	TGTGCCTT	5.638e^-5	0.469	INTRON Dop2R
2L	3929258	2L_3929258_SNP [dm3] 2L_3929258_SNP [dm6]	G	A	5.655e^-5	0.469	INTRON fred
X	3088659	X_3088659_SNP [dm3] X_3194626_SNP [dm6]	G	A	5.790e^-5	0.477	INTRON dnc
3L	4520171	3L_4520171_SNP [dm3] 3L_4520171_SNP [dm6]	G	C	5.808e^-5	0.477	INTRON Tie
X	10274015	X_10274015_SNP [dm3] X_10379982_SNP [dm6]	T	C	5.836e^-5	0.477	SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	12677977	3R_12677977_SNP [dm3] 3R_16852255_SNP [dm6]	A	C	5.845e^-5	0.477	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15340080	2L_15340080_SNP [dm3] 2L_15340080_SNP [dm6]	T	A	5.913e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3504474	2L_3504474_DEL [dm3] 2L_3504474_DEL [dm6]	TC	T	5.933e^-5	0.479	UTR_5_PRIME tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24767970	3R_24767970_SNP [dm3] 3R_28942248_SNP [dm6]	T	A	5.947e^-5	0.479	INTRON CG14521
X	17746504	X_17746504_SNP [dm3] X_17852471_SNP [dm6]	A	G	5.979e^-5	0.479	NON_SYNONYMOUS_CODING CG32554 DOWNSTREAM CG6506 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	12677249	3R_12677249_SNP [dm3] 3R_16851527_SNP [dm6]	C	A	6.036e^-5	0.482	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14441427	X_14441427_SNP [dm3] X_14547394_SNP [dm6]	T	A	6.089e^-5	0.484	INTERGENIC
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	6.116e^-5	0.484	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3951594	3L_3951594_SNP [dm3] 3L_3951594_SNP [dm6]	T	A	6.172e^-5	0.486	INTRON CG14984
3R	23847041	3R_23847041_SNP [dm3] 3R_28021319_SNP [dm6]	G	C	6.275e^-5	0.491	INTERGENIC
X	12753624	X_12753624_SNP [dm3] X_12859591_SNP [dm6]	G	A	6.297e^-5	0.491	INTRON Pde9
3L	8619729	3L_8619729_SNP [dm3] 3L_8626629_SNP [dm6]	A	C	6.332e^-5	0.491	INTRON Zasp66
3R	16175101	3R_16175101_SNP [dm3] 3R_20349379_SNP [dm6]	T	C	6.368e^-5	0.491	INTERGENIC
3R	11594068	3R_11594068_SNP [dm3] 3R_15768346_SNP [dm6]	A	G	6.380e^-5	0.491	UPSTREAM CG5623 INTERGENIC
X	9622010	X_9622010_SNP [dm3] X_9727977_SNP [dm6]	T	G	6.383e^-5	0.491	EXON CR43498	TF binding site BDTNP1_TFBS_dl
2L	7440910	2L_7440910_SNP [dm3] 2L_7440910_SNP [dm6]	G	T	6.470e^-5	0.494	UTR_5_PRIME CG5973 INTRON CG5973
3R	14458565	3R_14458565_SNP [dm3] 3R_18632843_SNP [dm6]	A	T	6.478e^-5	0.494	INTRON qin & 1 other
3L	8605413	3L_8605413_SNP [dm3] 3L_8612313_SNP [dm6]	C	G	6.512e^-5	0.494	INTRON CG6282
3R	26923909	3R_26923909_SNP [dm3] 3R_31098187_SNP [dm6]	G	A	6.580e^-5	0.498	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
2R	10713719	2R_10713719_SNP [dm3] 2R_14826214_SNP [dm6]	T	C	6.664e^-5	0.5	INTERGENIC
3L	1196839	3L_1196839_SNP [dm3] 3L_1196839_SNP [dm6]	G	T	6.670e^-5	0.5	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11876380	X_11876380_SNP [dm3] X_11982347_SNP [dm6]	T	A	6.768e^-5	0.502	INTRON cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10469521	X_10469521_SNP [dm3] X_10575488_SNP [dm6]	A	G	6.775e^-5	0.502	SYNONYMOUS_CODING spri
3L	5237909	3L_5237909_SNP [dm3] 3L_5244809_SNP [dm6]	G	T	6.777e^-5	0.502	INTRON shep
2L	17972979	2L_17972979_SNP [dm3] 2L_17972979_SNP [dm6]	T	G	6.819e^-5	0.503	SYNONYMOUS_CODING CG5674 UTR_3_PRIME CG5674 INTRON btv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12646250	3R_12646250_SNP [dm3] 3R_16820528_SNP [dm6]	G	A	6.837e^-5	0.503	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	14073081	2R_14073081_SNP [dm3] 2R_18185576_SNP [dm6]	T	C	6.859e^-5	0.503	INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22136664	X_22136664_SNP [dm3] X_22734828_SNP [dm6]	G	T	6.904e^-5	0.504	INTRON CR44997
3R	7224275	3R_7224275_SNP [dm3] 3R_11398553_SNP [dm6]	C	A	6.964e^-5	0.504	UTR_3_PRIME pros
2L	5702877	2L_5702877_SNP [dm3] 2L_5702877_SNP [dm6]	T	C	6.967e^-5	0.504	INTERGENIC
2L	5129418	2L_5129418_SNP [dm3] 2L_5129418_SNP [dm6]	C	T	6.991e^-5	0.504	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17270745	3L_17270745_SNP [dm3] 3L_17277645_SNP [dm6]	C	T	7.060e^-5	0.504	INTERGENIC
2L	14535359	2L_14535359_SNP [dm3] 2L_14535359_SNP [dm6]	C	A	7.068e^-5	0.504	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20288751	3R_20288751_SNP [dm3] 3R_24463029_SNP [dm6]	C	G	7.086e^-5	0.504	DOWNSTREAM CR45649 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	14723482	3R_14723482_SNP [dm3] 3R_18897760_SNP [dm6]	G	A	7.094e^-5	0.504	UPSTREAM CG14297 INTERGENIC
X	11994896	X_11994896_INS [dm3] X_12100863_INS [dm6]	T	TCAGAT	7.116e^-5	0.504	INTRON CR43960 & 1 other
3R	14457149	3R_14457149_SNP [dm3] 3R_18631427_SNP [dm6]	C	A	7.186e^-5	0.504	INTRON qin & 1 other
2L	274600	2L_274600_SNP [dm3] 2L_274600_SNP [dm6]	G	T	7.192e^-5	0.504	NON_SYNONYMOUS_CODING CG11555 UPSTREAM mbm DOWNSTREAM CG17078	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	17748123	X_17748123_SNP [dm3] X_17854090_SNP [dm6]	G	A	7.205e^-5	0.504	INTRON CG32557	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18447251	3L_18447251_SNP [dm3] 3L_18454151_SNP [dm6]	G	T	7.300e^-5	0.508	INTERGENIC
2L	20511941	2L_20511941_SNP [dm3] 2L_20511941_SNP [dm6]	A	T	7.342e^-5	0.508	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	27246036	3R_27246036_SNP [dm3] 3R_31420314_SNP [dm6]	T	A	7.372e^-5	0.508	INTRON Gprk2
3L	4313712	3L_4313712_SNP [dm3] 3L_4313712_SNP [dm6]	C	T	7.375e^-5	0.508	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12567007	3R_12567007_SNP [dm3] 3R_16741285_SNP [dm6]	T	A	7.389e^-5	0.508	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5805475	2L_5805475_SNP [dm3] 2L_5805475_SNP [dm6]	C	T	7.419e^-5	0.508	UTR_5_PRIME CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	2122520	3L_2122520_SNP [dm3] 3L_2122520_SNP [dm6]	T	A	7.500e^-5	0.509	DOWNSTREAM zormin INTRON zormin
3L	1806698	3L_1806698_SNP [dm3] 3L_1806698_SNP [dm6]	G	T	7.501e^-5	0.509	UTR_3_PRIME CG42676 UPSTREAM CR45687 EXON CR45686
2L	5437281	2L_5437281_SNP [dm3] 2L_5437281_SNP [dm6]	G	A	7.538e^-5	0.509	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
2L	5437285	2L_5437285_SNP [dm3] 2L_5437285_SNP [dm6]	A	T	7.538e^-5	0.509	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
3R	7227149	3R_7227149_SNP [dm3] 3R_11401427_SNP [dm6]	C	T	7.619e^-5	0.512	UTR_3_PRIME pros
3L	18728216	3L_18728216_SNP [dm3] 3L_18735116_SNP [dm6]	C	G	7.660e^-5	0.513	INTERGENIC
X	12286914	X_12286914_SNP [dm3] X_12392881_SNP [dm6]	G	A	7.707e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10296719	X_10296719_SNP [dm3] X_10402686_SNP [dm6]	A	G	7.793e^-5	0.513	INTRON flw
2L	4462628	2L_4462628_SNP [dm3] 2L_4462628_SNP [dm6]	T	G	7.871e^-5	0.513	SYNONYMOUS_CODING CG15443 UPSTREAM CG15436 DOWNSTREAM CG15435	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	18976707	2R_18976707_SNP [dm3] 2R_23089184_SNP [dm6]	C	T	7.891e^-5	0.513	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	17950492	2R_17950492_SNP [dm3] 2R_22062987_SNP [dm6]	G	A	7.909e^-5	0.513	INTRON Snp
3R	12692394	3R_12692394_SNP [dm3] 3R_16866672_SNP [dm6]	A	T	7.930e^-5	0.513	INTRON iab-8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	8.054e^-5	0.513	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
X	14300506	X_14300506_DEL [dm3] X_14406473_DEL [dm6]	AT	A	8.069e^-5	0.513	INTRON dpr8
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	8.092e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18447380	3L_18447380_SNP [dm3] 3L_18454280_SNP [dm6]	T	C	8.130e^-5	0.513	INTERGENIC
3L	18447381	3L_18447381_SNP [dm3] 3L_18454281_SNP [dm6]	T	A	8.130e^-5	0.513	INTERGENIC
2L	6109083	2L_6109083_SNP [dm3] 2L_6109083_SNP [dm6]	G	A	8.139e^-5	0.513	UPSTREAM stai INTRON stai	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	4485604	3L_4485604_SNP [dm3] 3L_4485604_SNP [dm6]	G	A	8.146e^-5	0.513	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7101386	3R_7101386_SNP [dm3] 3R_11275664_SNP [dm6]	C	A	8.175e^-5	0.513	INTRON CR31386
3L	9550581	3L_9550581_SNP [dm3] 3L_9557481_SNP [dm6]	G	T	8.189e^-5	0.513	INTRON CG42673
2L	17860681	2L_17860681_SNP [dm3] 2L_17860681_SNP [dm6]	T	A	8.287e^-5	0.513	INTRON CadN2
2L	142526	2L_142526_SNP [dm3] 2L_142526_SNP [dm6]	A	T	8.300e^-5	0.513	UTR_5_PRIME CG31974 UPSTREAM CG11454 INTRON CG11455	TF binding site mE1_TFBS_sens
3L	2835279	3L_2835279_SNP [dm3] 3L_2835279_SNP [dm6]	A	T	8.328e^-5	0.513	INTRON CG43444
2R	15431449	2R_15431449_SNP [dm3] 2R_19543944_SNP [dm6]	C	G	8.331e^-5	0.513	INTRON sm
3L	9751468	3L_9751468_SNP [dm3] 3L_9758368_SNP [dm6]	T	G	8.340e^-5	0.513	INTRON CG42268
3R	4978763	3R_4978763_DEL [dm3] 3R_9153041_DEL [dm6]	GCATTCGATGGG...	G	8.351e^-5	0.513	INTRON pum
3L	18447383	3L_18447383_SNP [dm3] 3L_18454283_SNP [dm6]	T	A	8.361e^-5	0.513	INTERGENIC
X	22136700	X_22136700_SNP [dm3] X_22734864_SNP [dm6]	A	G	8.376e^-5	0.513	INTRON CR44997
X	19731853	X_19731853_SNP [dm3] X_19837820_SNP [dm6]	T	C	8.403e^-5	0.513	INTRON pico	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	19021480	X_19021480_SNP [dm3] X_19127447_SNP [dm6]	A	C	8.411e^-5	0.513	UPSTREAM tgy INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8463332	3L_8463332_SNP [dm3] 3L_8470232_SNP [dm6]	C	T	8.412e^-5	0.513	INTRON Gug
3L	3260896	3L_3260896_SNP [dm3] 3L_3260896_SNP [dm6]	C	G	8.414e^-5	0.513	INTRON ckd
2L	618570	2L_618570_SNP [dm3] 2L_618570_SNP [dm6]	T	A	8.503e^-5	0.513	INTERGENIC
3R	5831791	3R_5831791_SNP [dm3] 3R_10006069_SNP [dm6]	T	C	8.537e^-5	0.513	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13977568	X_13977568_SNP [dm3] X_14083535_SNP [dm6]	G	T	8.625e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	5363515	3R_5363515_SNP [dm3] 3R_9537793_SNP [dm6]	T	G	8.717e^-5	0.513	UTR_3_PRIME mura DOWNSTREAM mura
X	19238309	X_19238309_SNP [dm3] X_19344276_SNP [dm6]	C	T	8.731e^-5	0.513	INTRON nAChRalpha7
3L	3142279	3L_3142279_SNP [dm3] 3L_3142279_SNP [dm6]	T	C	8.733e^-5	0.513	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18707578	2R_18707578_SNP [dm3] 2R_22820073_SNP [dm6]	C	T	8.738e^-5	0.513	INTRON CG30271	TF binding site mE1_TFBS_chinmo
3L	9896979	3L_9896979_SNP [dm3] 3L_9903879_SNP [dm6]	A	C	8.742e^-5	0.513	DOWNSTREAM nudE INTERGENIC
3L	12383239	3L_12383239_SNP [dm3] 3L_12390139_SNP [dm6]	T	G	8.748e^-5	0.513	INTRON Ncc69
3R	21157329	3R_21157329_SNP [dm3] 3R_25331607_SNP [dm6]	A	T	8.759e^-5	0.513	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
3R	13557293	3R_13557293_SNP [dm3] 3R_17731571_SNP [dm6]	C	T	8.844e^-5	0.513	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13667644	3R_13667644_SNP [dm3] 3R_17841922_SNP [dm6]	G	A	8.845e^-5	0.513	INTRON tinc
3L	3309385	3L_3309385_INS [dm3] 3L_3309385_INS [dm6]	T	TT	8.868e^-5	0.513	UPSTREAM ZnT63C INTRON ZnT63C
2L	4709951	2L_4709951_SNP [dm3] 2L_4709951_SNP [dm6]	C	T	8.881e^-5	0.513	INTRON CG34351	TF binding site mE1_TFBS_chinmo
X	19158631	X_19158631_SNP [dm3] X_19264598_SNP [dm6]	T	C	8.924e^-5	0.513	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17860676	2L_17860676_SNP [dm3] 2L_17860676_SNP [dm6]	G	C	8.928e^-5	0.513	INTRON CadN2
X	15711445	X_15711445_SNP [dm3] X_15817412_SNP [dm6]	G	A	8.942e^-5	0.513	UPSTREAM sd INTRON sd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA
2L	3720667	2L_3720667_SNP [dm3] 2L_3720667_SNP [dm6]	T	C	9.030e^-5	0.513	UPSTREAM Shaw INTRON Shaw
X	6406966	X_6406966_SNP [dm3] X_6512933_SNP [dm6]	G	A	9.090e^-5	0.513	INTRON CG42340
2L	7713318	2L_7713318_SNP [dm3] 2L_7713318_SNP [dm6]	C	T	9.092e^-5	0.513	SYNONYMOUS_CODING Ntl DOWNSTREAM CG33296
3R	24561449	3R_24561449_SNP [dm3] 3R_28735727_SNP [dm6]	A	G	9.105e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7272926	3L_7272926_MNP [dm3] 3L_7279826_MNP [dm6]	CAA	TTG	9.111e^-5	0.513	INTRON unc-13-4A
2L	9474830	2L_9474830_DEL [dm3] 2L_9474830_DEL [dm6]	TTTTTGAACGAAATGTGTAT...	T	9.114e^-5	0.513	INTERGENIC
X	20458952	X_20458952_INS [dm3] X_20587925_INS [dm6]	A	ATTAATCATCA...	9.129e^-5	0.513	INTERGENIC
X	5476830	X_5476830_SNP [dm3] X_5582797_SNP [dm6]	T	C	9.135e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20540226	3R_20540226_SNP [dm3] 3R_24714504_SNP [dm6]	G	T	9.143e^-5	0.513	UPSTREAM CG13627 INTRON CG13627
2R	12518258	2R_12518258_SNP [dm3] 2R_16630753_SNP [dm6]	C	T	9.167e^-5	0.513	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo
3R	20402050	3R_20402050_SNP [dm3] 3R_24576328_SNP [dm6]	A	G	9.181e^-5	0.513	INTRON CG13624
3L	10794922	3L_10794922_INS [dm3] 3L_10801822_INS [dm6]	C	CATCGTACGGTCCTCCCAGT...	9.222e^-5	0.513
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	9.241e^-5	0.513	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	8880102	2L_8880102_SNP [dm3] 2L_8880102_SNP [dm6]	C	G	9.302e^-5	0.513	INTERGENIC
2L	8880103	2L_8880103_DEL [dm3] 2L_8880103_DEL [dm6]	GTCTAAGACTG...	G	9.302e^-5	0.513	INTERGENIC
3R	7231860	3R_7231860_SNP [dm3] 3R_11406138_SNP [dm6]	A	T	9.305e^-5	0.513	UTR_3_PRIME pros
3R	22278244	3R_22278244_SNP [dm3] 3R_26452522_SNP [dm6]	A	T	9.347e^-5	0.513	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
3L	9652468	3L_9652468_SNP [dm3] 3L_9659368_SNP [dm6]	T	G	9.357e^-5	0.513	UTR_3_PRIME CG33696 INTRON fry
3R	23585969	3R_23585969_SNP [dm3] 3R_27760247_SNP [dm6]	A	G	9.453e^-5	0.513	INTERGENIC
3L	16881535	3L_16881535_INS [dm3] 3L_16888435_INS [dm6]	A	AA	9.467e^-5	0.513	INTRON Lmpt
3R	7178120	3R_7178120_SNP [dm3] 3R_11352398_SNP [dm6]	G	C	9.505e^-5	0.513	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6478481	3R_6478481_SNP [dm3] 3R_10652759_SNP [dm6]	T	C	9.535e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478485	3R_6478485_INS [dm3] 3R_10652763_INS [dm6]	A	GC	9.535e^-5	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	3794638	X_3794638_SNP [dm3] X_3900605_SNP [dm6]	T	A	9.550e^-5	0.513	INTRON CG42541
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	9.628e^-5	0.513	UTR_3_PRIME sfl
3L	4486048	3L_4486048_SNP [dm3] 3L_4486048_SNP [dm6]	A	G	9.665e^-5	0.513	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	1264747	3R_1264747_SNP [dm3] 3R_5439025_SNP [dm6]	G	A	9.740e^-5	0.513	INTRON CG14669	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	17048738	2R_17048738_SNP [dm3] 2R_21161233_SNP [dm6]	A	G	9.812e^-5	0.513	UPSTREAM CG30389 & 2 others DOWNSTREAM tRNA:G3:57BCa & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2510391	3L_2510391_SNP [dm3] 3L_2510391_SNP [dm6]	G	T	9.819e^-5	0.513	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo
3L	7559546	3L_7559546_SNP [dm3] 3L_7566446_SNP [dm6]	C	A	9.844e^-5	0.513	STOP_GAINED frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7559547	3L_7559547_SNP [dm3] 3L_7566447_SNP [dm6]	A	C	9.844e^-5	0.513	SYNONYMOUS_CODING frac INTRON frac	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2459924	3L_2459924_SNP [dm3] 3L_2459924_SNP [dm6]	C	T	9.849e^-5	0.513	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186
2L	7045431	2L_7045431_SNP [dm3] 2L_7045431_SNP [dm6]	T	C	9.854e^-5	0.513	INTRON milt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9856100	X_9856100_SNP [dm3] X_9962067_SNP [dm6]	A	G	9.864e^-5	0.513	INTERGENIC
X	12252201	X_12252201_SNP [dm3] X_12358168_SNP [dm6]	T	G	9.884e^-5	0.513	INTERGENIC
2L	9281511	2L_9281511_SNP [dm3] 2L_9281511_SNP [dm6]	C	A	9.889e^-5	0.513	INTRON Ggamma30A
3L	18452378	3L_18452378_SNP [dm3] 3L_18459278_SNP [dm6]	C	G	9.894e^-5	0.513	DOWNSTREAM CG32196 INTERGENIC
2L	9421660	2L_9421660_SNP [dm3] 2L_9421660_SNP [dm6]	A	G	9.904e^-5	0.513	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7063368	2L_7063368_SNP [dm3] 2L_7063368_SNP [dm6]	T	A	9.947e^-5	0.513	UTR_3_PRIME Mnn1 UPSTREAM Sem1 DOWNSTREAM Mnn1	TF binding site mE1_TFBS_cnc
3R	5819202	3R_5819202_SNP [dm3] 3R_9993480_SNP [dm6]	C	A	9.958e^-5	0.513	UTR_3_PRIME Glut4EF
2R	18437662	2R_18437662_SNP [dm3] 2R_22550157_SNP [dm6]	C	A	1.002e^-4	0.513	UTR_5_PRIME CG6018 INTRON px
3R	6538718	3R_6538718_SNP [dm3] 3R_10712996_SNP [dm6]	A	T	1.003e^-4	0.513	INTERGENIC
3R	13057395	3R_13057395_SNP [dm3] 3R_17231673_SNP [dm6]	C	T	1.010e^-4	0.513	DOWNSTREAM beat-IIb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	10000505	3L_10000505_SNP [dm3] 3L_10007405_SNP [dm6]	G	A	1.011e^-4	0.513	INTRON dpr6
3R	25698000	3R_25698000_SNP [dm3] 3R_29872278_SNP [dm6]	C	A	1.015e^-4	0.513	SPLICE_SITE_REGION CG34133 INTRON CG34133	TF binding site mE1_TFBS_cad
2L	4573939	2L_4573939_SNP [dm3] 2L_4573939_SNP [dm6]	T	C	1.015e^-4	0.513	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	4791827	3R_4791827_INS [dm3] 3R_8966105_INS [dm6]	T	TACA	1.016e^-4	0.513	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22326688	X_22326688_SNP [dm3] X_22924852_SNP [dm6]	T	A	1.024e^-4	0.513	INTERGENIC	transposable element FlyBase
2R	10647322	2R_10647322_SNP [dm3] 2R_14759817_SNP [dm6]	T	G	1.027e^-4	0.513	UTR_3_PRIME Spred UPSTREAM CG12857
3L	16769780	3L_16769780_SNP [dm3] 3L_16776680_SNP [dm6]	T	G	1.029e^-4	0.513	UTR_3_PRIME Nrt & 1 other DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3848033	3L_3848033_SNP [dm3] 3L_3848033_SNP [dm6]	C	T	1.029e^-4	0.513	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	2834651	3L_2834651_SNP [dm3] 3L_2834651_SNP [dm6]	G	C	1.031e^-4	0.513	INTRON CG43444
X	12722117	X_12722117_SNP [dm3] X_12828084_SNP [dm6]	A	G	1.032e^-4	0.513	INTRON Pde9
3R	12677497	3R_12677497_SNP [dm3] 3R_16851775_SNP [dm6]	C	A	1.040e^-4	0.516	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19113449	X_19113449_SNP [dm3] X_19219416_SNP [dm6]	G	A	1.043e^-4	0.516	INTERGENIC
2L	16365987	2L_16365987_SNP [dm3] 2L_16365987_SNP [dm6]	C	T	1.054e^-4	0.52	SYNONYMOUS_CODING jhamt
X	16859973	X_16859973_SNP [dm3] X_16965940_SNP [dm6]	A	G	1.056e^-4	0.52	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3R	4062017	3R_4062017_SNP [dm3] 3R_8236295_SNP [dm6]	A	C	1.063e^-4	0.52	NON_SYNONYMOUS_CODING DNApol-iota DOWNSTREAM Ada2b
2L	5437302	2L_5437302_SNP [dm3] 2L_5437302_SNP [dm6]	C	A	1.067e^-4	0.52	DOWNSTREAM snoRNA:Me28S-A2486 INTRON CR31647
3L	9949490	3L_9949490_SNP [dm3] 3L_9956390_SNP [dm6]	C	T	1.068e^-4	0.52	INTRON CG34356
X	19764020	X_19764020_SNP [dm3] X_19869987_SNP [dm6]	A	G	1.070e^-4	0.52	SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5162649	X_5162649_DEL [dm3] X_5268616_DEL [dm6]	AA	A	1.071e^-4	0.52	INTERGENIC
3R	11594071	3R_11594071_SNP [dm3] 3R_15768349_SNP [dm6]	T	C	1.077e^-4	0.52	UPSTREAM CG5623 INTERGENIC
X	12722153	X_12722153_SNP [dm3] X_12828120_SNP [dm6]	A	C	1.077e^-4	0.52	INTRON Pde9
X	7071513	X_7071513_SNP [dm3] X_7177480_SNP [dm6]	G	T	1.079e^-4	0.52	INTRON CG9650 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4564356	2L_4564356_SNP [dm3] 2L_4564356_SNP [dm6]	T	C	1.080e^-4	0.52	INTRON dp	TF binding site mE1_TFBS_cad
X	1868587	X_1868587_SNP [dm3] X_1974554_SNP [dm6]	G	T	1.088e^-4	0.52	INTRON Hr4
2L	6102211	2L_6102211_SNP [dm3] 2L_6102211_SNP [dm6]	C	G	1.090e^-4	0.52	INTRON stai
3L	9751350	3L_9751350_SNP [dm3] 3L_9758250_SNP [dm6]	G	C	1.093e^-4	0.52	INTRON CG42268
3L	17683975	3L_17683975_SNP [dm3] 3L_17690875_SNP [dm6]	T	C	1.096e^-4	0.52	INTRON Ccn
3L	2124495	3L_2124495_SNP [dm3] 3L_2124495_SNP [dm6]	G	A	1.096e^-4	0.52	SYNONYMOUS_CODING zormin INTRON zormin
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	1.098e^-4	0.52	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	18453521	3L_18453521_SNP [dm3] 3L_18460421_SNP [dm6]	A	T	1.103e^-4	0.521	INTRON CG32196	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12319149	2L_12319149_SNP [dm3] 2L_12319149_SNP [dm6]	C	T	1.109e^-4	0.523	INTERGENIC
3R	15194508	3R_15194508_SNP [dm3] 3R_19368786_SNP [dm6]	T	A	1.112e^-4	0.523	DOWNSTREAM Ino80 INTERGENIC
3R	12672467	3R_12672467_SNP [dm3] 3R_16846745_SNP [dm6]	T	G	1.121e^-4	0.525	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	9897792	3L_9897792_SNP [dm3] 3L_9904692_SNP [dm6]	C	T	1.136e^-4	0.532	INTERGENIC
2L	5805549	2L_5805549_SNP [dm3] 2L_5805549_SNP [dm6]	C	G	1.144e^-4	0.532	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	4799533	3R_4799533_SNP [dm3] 3R_8973811_SNP [dm6]	G	T	1.147e^-4	0.532	INTERGENIC
3R	4450196	3R_4450196_SNP [dm3] 3R_8624474_SNP [dm6]	C	G	1.149e^-4	0.532	INTRON 5-HT2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5860172	2L_5860172_SNP [dm3] 2L_5860172_SNP [dm6]	C	A	1.150e^-4	0.532	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
3L	7272936	3L_7272936_SNP [dm3] 3L_7279836_SNP [dm6]	T	G	1.151e^-4	0.532	INTRON unc-13-4A
3R	24767972	3R_24767972_SNP [dm3] 3R_28942250_SNP [dm6]	G	C	1.156e^-4	0.532	INTRON CG14521
3R	10882574	3R_10882574_SNP [dm3] 3R_15056852_SNP [dm6]	A	T	1.157e^-4	0.532	UTR_3_PRIME dpr9
2L	6108496	2L_6108496_SNP [dm3] 2L_6108496_SNP [dm6]	A	T	1.162e^-4	0.532	INTRON stai
X	19904667	X_19904667_SNP [dm3] X_20010634_SNP [dm6]	G	A	1.165e^-4	0.532	INTRON Dop2R
2L	5860118	2L_5860118_SNP [dm3] 2L_5860118_SNP [dm6]	A	G	1.172e^-4	0.532	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
3R	12647192	3R_12647192_SNP [dm3] 3R_16821470_SNP [dm6]	T	A	1.178e^-4	0.532	INTRON abd-A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1278435	3L_1278435_SNP [dm3] 3L_1278435_SNP [dm6]	C	T	1.178e^-4	0.532	INTRON CG32333
2L	1658105	2L_1658105_SNP [dm3] 2L_1658105_SNP [dm6]	C	T	1.180e^-4	0.532	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	4655453	2L_4655453_SNP [dm3] 2L_4655453_SNP [dm6]	T	C	1.184e^-4	0.532	INTERGENIC
X	19158633	X_19158633_SNP [dm3] X_19264600_SNP [dm6]	A	T	1.187e^-4	0.532	INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4447326	X_4447326_SNP [dm3] X_4553293_SNP [dm6]	A	T	1.187e^-4	0.532	UTR_3_PRIME CG11444 DOWNSTREAM CG3527 INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	900563	2L_900563_SNP [dm3] 2L_900563_SNP [dm6]	C	T	1.188e^-4	0.532	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18459325	3L_18459325_SNP [dm3] 3L_18466225_SNP [dm6]	G	A	1.192e^-4	0.532	INTERGENIC
X	7489464	X_7489464_SNP [dm3] X_7595431_SNP [dm6]	A	G	1.192e^-4	0.532	INTERGENIC	regulatory region REDfly_CRMs
2L	17860683	2L_17860683_SNP [dm3] 2L_17860683_SNP [dm6]	G	A	1.196e^-4	0.533	INTRON CadN2
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	1.199e^-4	0.533	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3937240	2L_3937240_SNP [dm3] 2L_3937240_SNP [dm6]	C	G	1.203e^-4	0.533	INTRON fred
2L	3838594	2L_3838594_SNP [dm3] 2L_3838594_SNP [dm6]	A	G	1.209e^-4	0.533	UTR_3_PRIME slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16809229	2L_16809229_SNP [dm3] 2L_16809229_SNP [dm6]	T	G	1.213e^-4	0.533	INTRON CG13280 & 1 other
2L	9187301	2L_9187301_SNP [dm3] 2L_9187301_SNP [dm6]	A	C	1.217e^-4	0.533	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1655732	2L_1655732_SNP [dm3] 2L_1655732_SNP [dm6]	C	A	1.218e^-4	0.533	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	7088459	3L_7088459_SNP [dm3] 3L_7095359_SNP [dm6]	C	A	1.221e^-4	0.533	UTR_5_PRIME form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7087743	3L_7087743_SNP [dm3] 3L_7094643_SNP [dm6]	G	A	1.224e^-4	0.533	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	15319295	2L_15319295_SNP [dm3] 2L_15319295_SNP [dm6]	T	C	1.227e^-4	0.533	UPSTREAM nht INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4484210	3L_4484210_SNP [dm3] 3L_4484210_SNP [dm6]	C	T	1.229e^-4	0.533	SYNONYMOUS_CODING CG11350 DOWNSTREAM CG13722
X	13019956	X_13019956_INS [dm3] X_13125923_INS [dm6]	C	ATCACACGA	1.231e^-4	0.533	INTRON CG32638
2R	10844373	2R_10844373_SNP [dm3] 2R_14956868_SNP [dm6]	T	C	1.233e^-4	0.533	INTRON aPKC
3R	13063978	3R_13063978_SNP [dm3] 3R_17238256_SNP [dm6]	A	T	1.234e^-4	0.533	INTRON beat-IIb
3R	10680065	3R_10680065_SNP [dm3] 3R_14854343_SNP [dm6]	A	G	1.237e^-4	0.533	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	8954434	X_8954434_SNP [dm3] X_9060401_SNP [dm6]	C	G	1.240e^-4	0.533	INTRON CG15365
2L	5804878	2L_5804878_SNP [dm3] 2L_5804878_SNP [dm6]	G	T	1.248e^-4	0.533	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	16334434	3L_16334434_SNP [dm3] 3L_16341334_SNP [dm6]	A	C	1.250e^-4	0.533	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16237684	2R_16237684_SNP [dm3] 2R_20350179_SNP [dm6]	C	G	1.252e^-4	0.533	INTERGENIC
3R	4791824	3R_4791824_INS [dm3] 3R_8966102_INS [dm6]	A	ATT	1.253e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4791052	3R_4791052_SNP [dm3] 3R_8965330_SNP [dm6]	C	T	1.256e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6478421	3R_6478421_SNP [dm3] 3R_10652699_SNP [dm6]	G	A	1.260e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	6478427	3R_6478427_SNP [dm3] 3R_10652705_SNP [dm6]	T	C	1.260e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	16233661	3R_16233661_SNP [dm3] 3R_20407939_SNP [dm6]	A	G	1.265e^-4	0.534	UPSTREAM CG10881 & 1 other INTRON Gfrl
3L	2506125	3L_2506125_SNP [dm3] 3L_2506125_SNP [dm6]	T	A	1.273e^-4	0.537	UTR_3_PRIME Spn DOWNSTREAM Spn	TF binding site BDTNP1_TFBS_twi
3L	4526321	3L_4526321_SNP [dm3] 3L_4526321_SNP [dm6]	T	G	1.279e^-4	0.537	INTRON Tie
X	11178183	X_11178183_SNP [dm3] X_11284150_SNP [dm6]	C	A	1.280e^-4	0.537	INTRON CG44422
X	11112726	X_11112726_SNP [dm3] X_11218693_SNP [dm6]	G	C	1.284e^-4	0.537	DOWNSTREAM CG44422 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11528288	3L_11528288_SNP [dm3] 3L_11535188_SNP [dm6]	T	A	1.294e^-4	0.537	UPSTREAM Mob2 INTRON Mob2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6108492	2L_6108492_DEL [dm3] 2L_6108492_DEL [dm6]	GG	C	1.298e^-4	0.537	INTRON stai
2L	16431169	2L_16431169_SNP [dm3] 2L_16431169_SNP [dm6]	C	T	1.299e^-4	0.537	INTRON CG5888
2L	316078	2L_316078_SNP [dm3] 2L_316078_SNP [dm6]	T	A	1.299e^-4	0.537	INTRON Plc21C
3L	4647316	3L_4647316_SNP [dm3] 3L_4647316_SNP [dm6]	T	A	1.301e^-4	0.537	UPSTREAM CG32238 INTRON axo
2L	14391209	2L_14391209_SNP [dm3] 2L_14391209_SNP [dm6]	G	A	1.303e^-4	0.537	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
3L	18874454	3L_18874454_SNP [dm3] 3L_18881354_SNP [dm6]	C	T	1.303e^-4	0.537	INTRON CG3961
2L	5804224	2L_5804224_INS [dm3] 2L_5804224_INS [dm6]	A	ATTTA	1.315e^-4	0.541	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	1.320e^-4	0.541	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2661599	3L_2661599_SNP [dm3] 3L_2661599_SNP [dm6]	G	A	1.327e^-4	0.541	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	13557283	3R_13557283_SNP [dm3] 3R_17731561_SNP [dm6]	T	G	1.330e^-4	0.541	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	4815832	3R_4815832_SNP [dm3] 3R_8990110_SNP [dm6]	G	A	1.331e^-4	0.541	SYNONYMOUS_CODING CG11970 DOWNSTREAM E_var_3-9
3L	8614845	3L_8614845_SNP [dm3] 3L_8621745_SNP [dm6]	C	T	1.332e^-4	0.541	DOWNSTREAM GAPsec INTRON S-Lap2
2R	16372454	2R_16372454_SNP [dm3] 2R_20484949_SNP [dm6]	T	C	1.336e^-4	0.541	INTERGENIC
2L	4564340	2L_4564340_SNP [dm3] 2L_4564340_SNP [dm6]	T	A	1.338e^-4	0.541	INTRON dp	TF binding site mE1_TFBS_cad
3L	16174938	3L_16174938_SNP [dm3] 3L_16181838_SNP [dm6]	A	T	1.340e^-4	0.541	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9344968	3L_9344968_SNP [dm3] 3L_9351868_SNP [dm6]	G	C	1.355e^-4	0.543	DOWNSTREAM PGRP-LF INTRON UGP
3R	12949859	3R_12949859_SNP [dm3] 3R_17124137_SNP [dm6]	T	A	1.359e^-4	0.543	UPSTREAM CG45079 INTRON cher
2L	2025216	2L_2025216_SNP [dm3] 2L_2025216_SNP [dm6]	G	A	1.360e^-4	0.543	INTRON CG4238
3L	8615343	3L_8615343_SNP [dm3] 3L_8622243_SNP [dm6]	G	A	1.364e^-4	0.543	UTR_3_PRIME GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_HSA
X	4685423	X_4685423_SNP [dm3] X_4791390_SNP [dm6]	A	T	1.368e^-4	0.543	INTERGENIC
2L	3554043	2L_3554043_SNP [dm3] 2L_3554043_SNP [dm6]	T	A	1.370e^-4	0.543	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5804255	2L_5804255_SNP [dm3] 2L_5804255_SNP [dm6]	T	G	1.378e^-4	0.543	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	17683976	3L_17683976_SNP [dm3] 3L_17690876_SNP [dm6]	A	T	1.379e^-4	0.543	INTRON Ccn
3R	19369008	3R_19369008_SNP [dm3] 3R_23543286_SNP [dm6]	T	C	1.383e^-4	0.543	INTERGENIC
X	10443035	X_10443035_SNP [dm3] X_10549002_SNP [dm6]	C	T	1.385e^-4	0.543	INTRON spri
3R	23665482	3R_23665482_SNP [dm3] 3R_27839760_SNP [dm6]	C	A	1.388e^-4	0.543	INTRON CG34353
3R	3455036	3R_3455036_DEL [dm3] 3R_7629314_DEL [dm6]	ACTCCTTCA	A	1.393e^-4	0.543	INTRON CG34127	TF binding site mE1_TFBS_inv
2L	5804457	2L_5804457_SNP [dm3] 2L_5804457_SNP [dm6]	T	C	1.395e^-4	0.543	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12652828	3R_12652828_SNP [dm3] 3R_16827106_SNP [dm6]	C	A	1.398e^-4	0.543	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8957979	3L_8957979_SNP [dm3] 3L_8964879_SNP [dm6]	G	T	1.404e^-4	0.543	UPSTREAM CG5660 DOWNSTREAM CG5653 INTERGENIC
3L	19429608	3L_19429608_SNP [dm3] 3L_19436508_SNP [dm6]	G	A	1.404e^-4	0.543	INTERGENIC
2L	4061636	2L_4061636_SNP [dm3] 2L_4061636_SNP [dm6]	G	A	1.406e^-4	0.543	INTRON ed
2L	9282081	2L_9282081_SNP [dm3] 2L_9282081_SNP [dm6]	T	C	1.410e^-4	0.543	INTRON Ggamma30A
X	7488021	X_7488021_DEL [dm3] X_7593988_DEL [dm6]	TGT	T	1.412e^-4	0.543	INTERGENIC	regulatory region REDfly_CRMs
2L	8915143	2L_8915143_SNP [dm3] 2L_8915143_SNP [dm6]	G	T	1.414e^-4	0.543	INTRON CG34398
2L	5971137	2L_5971137_SNP [dm3] 2L_5971137_SNP [dm6]	T	G	1.414e^-4	0.543	UPSTREAM CR43465 DOWNSTREAM Ucp4B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15801289	2L_15801289_SNP [dm3] 2L_15801289_SNP [dm6]	A	T	1.416e^-4	0.543	INTERGENIC
3L	18450365	3L_18450365_SNP [dm3] 3L_18457265_SNP [dm6]	C	T	1.423e^-4	0.543	UPSTREAM CR44670 EXON CR44671
3L	4141441	3L_4141441_SNP [dm3] 3L_4141441_SNP [dm6]	T	G	1.425e^-4	0.543	UPSTREAM Akh & 1 other DOWNSTREAM Ras64B INTERGENIC
2L	7567537	2L_7567537_SNP [dm3] 2L_7567537_SNP [dm6]	A	T	1.427e^-4	0.543	INTRON RapGAP1
X	20793144	X_20793144_SNP [dm3] X_20922117_SNP [dm6]	G	T	1.427e^-4	0.543	INTRON shakB
3R	10504088	3R_10504088_SNP [dm3] 3R_14678366_SNP [dm6]	C	T	1.429e^-4	0.543	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	16430686	2L_16430686_SNP [dm3] 2L_16430686_SNP [dm6]	T	C	1.432e^-4	0.543	INTRON CG5888
X	17588056	X_17588056_SNP [dm3] X_17694023_SNP [dm6]	A	C	1.438e^-4	0.543	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13518399	2L_13518399_SNP [dm3] 2L_13518399_SNP [dm6]	A	G	1.441e^-4	0.543	INTRON B4
2R	10276216	2R_10276216_SNP [dm3] 2R_14388711_SNP [dm6]	G	A	1.442e^-4	0.543	INTERGENIC
X	9410112	X_9410112_INS [dm3] X_9516079_INS [dm6]	A	AC	1.444e^-4	0.543	INTRON CG32700
2L	11066197	2L_11066197_SNP [dm3] 2L_11066197_SNP [dm6]	A	T	1.452e^-4	0.543	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	1.457e^-4	0.543	INTRON alpha-Man-I
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	1.458e^-4	0.543	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3726920	3L_3726920_SNP [dm3] 3L_3726920_SNP [dm6]	T	G	1.464e^-4	0.543	INTRON CG32264
2L	493550	2L_493550_SNP [dm3] 2L_493550_SNP [dm6]	G	A	1.467e^-4	0.543	INTRON ush
X	3466522	X_3466522_SNP [dm3] X_3572489_SNP [dm6]	A	G	1.468e^-4	0.543	SYNONYMOUS_CODING CG2875 UPSTREAM CG32791 DOWNSTREAM ppk8	TF binding site mE1_TFBS_sens
X	10186020	X_10186020_SNP [dm3] X_10291987_SNP [dm6]	A	T	1.474e^-4	0.543	INTRON alpha-Man-I
3L	16175430	3L_16175430_SNP [dm3] 3L_16182330_SNP [dm6]	T	C	1.480e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12252238	X_12252238_SNP [dm3] X_12358205_SNP [dm6]	C	T	1.481e^-4	0.543	INTERGENIC
2L	4324389	2L_4324389_SNP [dm3] 2L_4324389_SNP [dm6]	G	C	1.481e^-4	0.543	UPSTREAM CG16857 DOWNSTREAM tutl INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5804505	2L_5804505_SNP [dm3] 2L_5804505_SNP [dm6]	G	A	1.482e^-4	0.543	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14148351	2R_14148351_SNP [dm3] 2R_18260846_SNP [dm6]	C	G	1.486e^-4	0.543	INTERGENIC
2L	5949357	2L_5949357_SNP [dm3] 2L_5949357_SNP [dm6]	C	T	1.486e^-4	0.543	UPSTREAM CR44986 & 1 other DOWNSTREAM Gpdh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	24105628	3R_24105628_SNP [dm3] 3R_28279906_SNP [dm6]	C	T	1.489e^-4	0.543	INTERGENIC
X	19931510	X_19931510_SNP [dm3] X_20037477_SNP [dm6]	A	G	1.495e^-4	0.543	INTRON Dop2R
2L	3521484	2L_3521484_SNP [dm3] 2L_3521484_SNP [dm6]	G	A	1.497e^-4	0.543	SYNONYMOUS_CODING CG8851	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5971104	2L_5971104_SNP [dm3] 2L_5971104_SNP [dm6]	G	C	1.499e^-4	0.543	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
2L	9810798	2L_9810798_SNP [dm3] 2L_9810798_SNP [dm6]	G	A	1.501e^-4	0.543	INTRON nAChRalpha6
2L	9803634	2L_9803634_SNP [dm3] 2L_9803634_SNP [dm6]	C	T	1.504e^-4	0.543	INTRON nAChRalpha6
X	5988781	X_5988781_DEL [dm3] X_6094748_DEL [dm6]	CGTCACGATATTGGGC...	C	1.505e^-4	0.543	UTR_5_PRIME Nep1 INTRON Nep1
X	5208452	X_5208452_SNP [dm3] X_5314419_SNP [dm6]	C	T	1.512e^-4	0.543	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16366575	2L_16366575_SNP [dm3] 2L_16366575_SNP [dm6]	G	A	1.514e^-4	0.543	INTRON jhamt
2L	8929951	2L_8929951_SNP [dm3] 2L_8929951_SNP [dm6]	C	T	1.514e^-4	0.543	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4291327	X_4291327_SNP [dm3] X_4397294_SNP [dm6]	G	A	1.518e^-4	0.543	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13781156	3R_13781156_SNP [dm3] 3R_17955434_SNP [dm6]	A	G	1.520e^-4	0.543	INTRON cpo
3L	4485062	3L_4485062_SNP [dm3] 3L_4485062_SNP [dm6]	A	G	1.521e^-4	0.543	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	11625318	3L_11625318_SNP [dm3] 3L_11632218_SNP [dm6]	A	G	1.526e^-4	0.543	DOWNSTREAM CR45158 INTRON CG32091
2L	1658149	2L_1658149_SNP [dm3] 2L_1658149_SNP [dm6]	C	T	1.531e^-4	0.543	INTRON chinmo	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	19115164	3R_19115164_SNP [dm3] 3R_23289442_SNP [dm6]	T	C	1.538e^-4	0.543	SYNONYMOUS_CODING CG4434 DOWNSTREAM pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25240219	3R_25240219_SNP [dm3] 3R_29414497_SNP [dm6]	C	A	1.543e^-4	0.543	INTRON Ptp99A
3L	9897794	3L_9897794_SNP [dm3] 3L_9904694_SNP [dm6]	G	A	1.543e^-4	0.543	INTERGENIC
3R	4791816	3R_4791816_INS [dm3] 3R_8966094_INS [dm6]	T	TGTTATCAATTTTATGTTAT...	1.543e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5691635	3L_5691635_SNP [dm3] 3L_5698535_SNP [dm6]	A	C	1.545e^-4	0.543	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16769498	3L_16769498_SNP [dm3] 3L_16776398_SNP [dm6]	A	C	1.559e^-4	0.543	UTR_3_PRIME Nrt DOWNSTREAM CG13025	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	9348996	3L_9348996_SNP [dm3] 3L_9355896_SNP [dm6]	C	T	1.562e^-4	0.543	DOWNSTREAM CG32040 INTRON UGP
3L	21437983	3L_21437983_SNP [dm3] 3L_21444883_SNP [dm6]	G	A	1.562e^-4	0.543	UPSTREAM CG5656 & 1 other INTERGENIC
X	16152343	X_16152343_INS [dm3] X_16258310_INS [dm6]	T	TT	1.563e^-4	0.543	INTERGENIC
3L	9806026	3L_9806026_SNP [dm3] 3L_9812926_SNP [dm6]	G	T	1.564e^-4	0.543	UPSTREAM CG43897 INTERGENIC
3L	6513576	3L_6513576_SNP [dm3] 3L_6520476_SNP [dm6]	C	T	1.571e^-4	0.543	INTRON sfl
3L	9806067	3L_9806067_SNP [dm3] 3L_9812967_SNP [dm6]	T	C	1.572e^-4	0.543	UPSTREAM CG43897 INTERGENIC
3L	9889089	3L_9889089_SNP [dm3] 3L_9895989_SNP [dm6]	G	C	1.573e^-4	0.543	NON_SYNONYMOUS_CODING CG6707
3R	20288709	3R_20288709_INS [dm3] 3R_24462987_INS [dm6]	G	GACA	1.574e^-4	0.543	DOWNSTREAM CR45649 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	9280008	2L_9280008_SNP [dm3] 2L_9280008_SNP [dm6]	C	T	1.577e^-4	0.543	INTRON Ggamma30A
3L	2122725	3L_2122725_SNP [dm3] 3L_2122725_SNP [dm6]	C	A	1.581e^-4	0.543	UTR_3_PRIME zormin INTRON zormin
2L	10516298	2L_10516298_SNP [dm3] 2L_10516298_SNP [dm6]	C	G	1.581e^-4	0.543	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12305032	3L_12305032_SNP [dm3] 3L_12311932_SNP [dm6]	T	A	1.585e^-4	0.543	UTR_3_PRIME CG44355
3R	7174244	3R_7174244_SNP [dm3] 3R_11348522_SNP [dm6]	T	A	1.586e^-4	0.543	START_GAINED KP78b UTR_5_PRIME KP78b UTR_3_PRIME KP78a UPSTREAM KP78b INTRON pros	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	17684511	3L_17684511_SNP [dm3] 3L_17691411_SNP [dm6]	T	G	1.587e^-4	0.543	INTRON Ccn
2L	2759827	2L_2759827_SNP [dm3] 2L_2759827_SNP [dm6]	T	A	1.588e^-4	0.543	UPSTREAM Trn-SR & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	4839371	X_4839371_DEL [dm3] X_4945338_DEL [dm6]	GG	G	1.588e^-4	0.543	INTRON Ptp4E
2L	9799444	2L_9799444_SNP [dm3] 2L_9799444_SNP [dm6]	T	A	1.591e^-4	0.543	INTRON nAChRalpha6
3L	3414299	3L_3414299_SNP [dm3] 3L_3414299_SNP [dm6]	A	C	1.593e^-4	0.543	INTRON sty
3L	9824569	3L_9824569_SNP [dm3] 3L_9831469_SNP [dm6]	T	C	1.594e^-4	0.543	INTRON CG43897	TF binding site mE1_TFBS_cad
3L	4483559	3L_4483559_SNP [dm3] 3L_4483559_SNP [dm6]	C	T	1.595e^-4	0.543	SYNONYMOUS_CODING CG11350
2L	12454311	2L_12454311_SNP [dm3] 2L_12454311_SNP [dm6]	T	A	1.599e^-4	0.543	EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10516303	2L_10516303_SNP [dm3] 2L_10516303_SNP [dm6]	A	C	1.599e^-4	0.543	INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	16366554	2L_16366554_SNP [dm3] 2L_16366554_SNP [dm6]	C	T	1.608e^-4	0.544	SYNONYMOUS_CODING jhamt
X	20952216	X_20952216_SNP [dm3] X_21081189_SNP [dm6]	T	C	1.610e^-4	0.544	UTR_3_PRIME bves	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14148566	2R_14148566_SNP [dm3] 2R_18261061_SNP [dm6]	T	G	1.612e^-4	0.544	INTERGENIC
2R	14470411	2R_14470411_SNP [dm3] 2R_18582906_SNP [dm6]	T	C	1.613e^-4	0.544	UTR_5_PRIME GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7454686	X_7454686_SNP [dm3] X_7560653_SNP [dm6]	A	G	1.618e^-4	0.545	INTERGENIC
3R	14391816	3R_14391816_SNP [dm3] 3R_18566094_SNP [dm6]	T	C	1.621e^-4	0.545	UPSTREAM CG43194 & 1 other INTERGENIC
2L	5059830	2L_5059830_SNP [dm3] 2L_5059830_SNP [dm6]	G	A	1.623e^-4	0.545	UPSTREAM Rpn11 & 1 other DOWNSTREAM CR45291 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA
X	9485348	X_9485348_SNP [dm3] X_9591315_SNP [dm6]	G	A	1.631e^-4	0.545	UPSTREAM CR45542 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14581782	3L_14581782_SNP [dm3] 3L_14588682_SNP [dm6]	G	T	1.638e^-4	0.545	INTRON HGTX
3R	15195747	3R_15195747_SNP [dm3] 3R_19370025_SNP [dm6]	G	A	1.640e^-4	0.545	INTRON Ino80
X	5366432	X_5366432_SNP [dm3] X_5472399_SNP [dm6]	G	C	1.648e^-4	0.545	INTRON SPR
2L	3499286	2L_3499286_SNP [dm3] 2L_3499286_SNP [dm6]	G	A	1.660e^-4	0.545	INTRON tim	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	17045498	2R_17045498_SNP [dm3] 2R_21157993_SNP [dm6]	A	G	1.661e^-4	0.545	UTR_5_PRIME CG30389 INTRON CG30389	TF binding site BDTNP1_TFBS_twi
3R	16406794	3R_16406794_SNP [dm3] 3R_20581072_SNP [dm6]	A	G	1.664e^-4	0.545	DOWNSTREAM Srp14 & 1 other INTRON CG34008	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12226680	2L_12226680_SNP [dm3] 2L_12226680_SNP [dm6]	G	T	1.664e^-4	0.545	INTRON aret
2L	12226681	2L_12226681_SNP [dm3] 2L_12226681_SNP [dm6]	G	T	1.664e^-4	0.545	INTRON aret
2R	6088676	2R_6088676_SNP [dm3] 2R_10201171_SNP [dm6]	A	G	1.666e^-4	0.545	INTERGENIC
X	16617000	X_16617000_SNP [dm3] X_16722967_SNP [dm6]	C	T	1.667e^-4	0.545	INTRON CG32572	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2893295	2L_2893295_SNP [dm3] 2L_2893295_SNP [dm6]	C	T	1.668e^-4	0.545	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	16430701	2L_16430701_SNP [dm3] 2L_16430701_SNP [dm6]	G	A	1.671e^-4	0.545	INTRON CG5888
2L	12177229	2L_12177229_SNP [dm3] 2L_12177229_SNP [dm6]	G	T	1.673e^-4	0.545	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
2L	5971096	2L_5971096_SNP [dm3] 2L_5971096_SNP [dm6]	A	G	1.676e^-4	0.545	UPSTREAM CR43465 DOWNSTREAM Ucp4B INTERGENIC	TF binding site mE1_TFBS_cad
3R	5704322	3R_5704322_SNP [dm3] 3R_9878600_SNP [dm6]	C	T	1.678e^-4	0.545	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24088657	3R_24088657_SNP [dm3] 3R_28262935_SNP [dm6]	G	C	1.679e^-4	0.545	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
3R	6203756	3R_6203756_SNP [dm3] 3R_10378034_SNP [dm6]	C	T	1.680e^-4	0.545	UTR_5_PRIME Rfx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	14148331	2R_14148331_SNP [dm3] 2R_18260826_SNP [dm6]	A	C	1.681e^-4	0.545	INTERGENIC
X	22136704	X_22136704_SNP [dm3] X_22734868_SNP [dm6]	G	A	1.685e^-4	0.545	INTRON CR44997
3R	12693712	3R_12693712_SNP [dm3] 3R_16867990_SNP [dm6]	G	T	1.698e^-4	0.545	INTRON iab-8
X	20235544	X_20235544_SNP [dm3] X_20364517_SNP [dm6]	G	A	1.703e^-4	0.545	INTERGENIC
2L	5403099	2L_5403099_SNP [dm3] 2L_5403099_SNP [dm6]	A	T	1.707e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5403108	2L_5403108_SNP [dm3] 2L_5403108_SNP [dm6]	C	A	1.707e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5927663	2L_5927663_SNP [dm3] 2L_5927663_SNP [dm6]	T	C	1.708e^-4	0.545	INTRON dsf
3L	10027406	3L_10027406_SNP [dm3] 3L_10034306_SNP [dm6]	G	C	1.709e^-4	0.545	INTRON dpr6
3L	4706354	3L_4706354_SNP [dm3] 3L_4706354_SNP [dm6]	C	A	1.712e^-4	0.545	INTRON RhoGEF64C
2L	4657401	2L_4657401_SNP [dm3] 2L_4657401_SNP [dm6]	A	G	1.712e^-4	0.545	INTERGENIC
3R	23684609	3R_23684609_SNP [dm3] 3R_27858887_SNP [dm6]	C	A	1.712e^-4	0.545	INTRON CG34353
X	16130583	X_16130583_SNP [dm3] X_16236550_SNP [dm6]	G	A	1.713e^-4	0.545	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	9919615	X_9919615_SNP [dm3] X_10025582_SNP [dm6]	A	G	1.716e^-4	0.545	INTRON Cht6
3L	4484720	3L_4484720_SNP [dm3] 3L_4484720_SNP [dm6]	A	G	1.718e^-4	0.545	DOWNSTREAM CG13722 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2L	17972949	2L_17972949_SNP [dm3] 2L_17972949_SNP [dm6]	G	A	1.731e^-4	0.547	SYNONYMOUS_CODING CG5674 UTR_3_PRIME CG5674 INTRON btv	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12833023	3L_12833023_SNP [dm3] 3L_12839923_SNP [dm6]	T	A	1.732e^-4	0.547	INTRON CG10960
3R	24108202	3R_24108202_SNP [dm3] 3R_28282480_SNP [dm6]	G	T	1.734e^-4	0.547	UPSTREAM CG34436 INTERGENIC
2L	18091400	2L_18091400_SNP [dm3] 2L_18091400_SNP [dm6]	C	A	1.738e^-4	0.548	INTRON CG15153
2L	15362599	2L_15362599_SNP [dm3] 2L_15362599_SNP [dm6]	A	T	1.744e^-4	0.548	UPSTREAM CG15258 INTERGENIC
X	20235502	X_20235502_SNP [dm3] X_20364475_SNP [dm6]	T	A	1.745e^-4	0.548	INTERGENIC
X	20235481	X_20235481_INS [dm3] X_20364454_INS [dm6]	T	TTTGGCT	1.752e^-4	0.55	INTERGENIC
X	12128413	X_12128413_SNP [dm3] X_12234380_SNP [dm6]	C	A	1.762e^-4	0.55	DOWNSTREAM CG32655 INTRON Ten-a
3R	7476534	3R_7476534_SNP [dm3] 3R_11650812_SNP [dm6]	A	G	1.764e^-4	0.55	UPSTREAM Elp1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18437309	3L_18437309_SNP [dm3] 3L_18444209_SNP [dm6]	A	T	1.772e^-4	0.55	INTERGENIC
3L	18645851	3L_18645851_SNP [dm3] 3L_18652751_SNP [dm6]	A	G	1.776e^-4	0.55	INTRON MYPT-75D
2L	4573730	2L_4573730_SNP [dm3] 2L_4573730_SNP [dm6]	T	C	1.777e^-4	0.55	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11625304	3L_11625304_SNP [dm3] 3L_11632204_SNP [dm6]	A	T	1.782e^-4	0.55	DOWNSTREAM CR45158 INTRON CG32091
X	7310436	X_7310436_SNP [dm3] X_7416403_SNP [dm6]	C	T	1.784e^-4	0.55	UPSTREAM CG34337 INTERGENIC
2L	10270865	2L_10270865_SNP [dm3] 2L_10270865_SNP [dm6]	G	C	1.788e^-4	0.55	SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	13910595	2L_13910595_SNP [dm3] 2L_13910595_SNP [dm6]	T	C	1.796e^-4	0.55	SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3R	9948704	3R_9948704_SNP [dm3] 3R_14122982_SNP [dm6]	T	C	1.798e^-4	0.55	SYNONYMOUS_CODING twf UPSTREAM Abi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	2122032	3L_2122032_SNP [dm3] 3L_2122032_SNP [dm6]	T	G	1.798e^-4	0.55	DOWNSTREAM zormin INTRON zormin	TF binding site BDTNP1_TFBS_twi
3L	18447034	3L_18447034_SNP [dm3] 3L_18453934_SNP [dm6]	C	T	1.799e^-4	0.55	INTERGENIC
3R	2088419	3R_2088419_SNP [dm3] 3R_6262697_SNP [dm6]	T	A	1.803e^-4	0.55	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14945061	3R_14945061_SNP [dm3] 3R_19119339_SNP [dm6]	G	A	1.804e^-4	0.55	INTRON CG6040
3L	21845975	3L_21845975_SNP [dm3] 3L_21852875_SNP [dm6]	T	C	1.810e^-4	0.55	INTRON mub
2L	18091416	2L_18091416_SNP [dm3] 2L_18091416_SNP [dm6]	C	A	1.811e^-4	0.55	INTRON CG15153
2L	4675093	2L_4675093_SNP [dm3] 2L_4675093_SNP [dm6]	A	G	1.813e^-4	0.55	INTERGENIC
2R	9088218	2R_9088218_SNP [dm3] 2R_13200713_SNP [dm6]	C	T	1.813e^-4	0.55	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad
3R	6094576	3R_6094576_SNP [dm3] 3R_10268854_SNP [dm6]	G	T	1.816e^-4	0.55	INTRON CG43143	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8386551	2R_8386551_SNP [dm3] 2R_12499046_SNP [dm6]	T	C	1.823e^-4	0.55	INTRON fdl & 1 other
2L	15303323	2L_15303323_SNP [dm3] 2L_15303323_SNP [dm6]	A	G	1.825e^-4	0.55	INTERGENIC
X	19497280	X_19497280_SNP [dm3] X_19603247_SNP [dm6]	A	C	1.827e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10516340	2L_10516340_SNP [dm3] 2L_10516340_SNP [dm6]	T	C	1.830e^-4	0.55	UPSTREAM Lrr47 INTRON Fatp & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	8406633	X_8406633_SNP [dm3] X_8512600_SNP [dm6]	C	T	1.840e^-4	0.55	SYNONYMOUS_CODING CG33181
X	13661089	X_13661089_SNP [dm3] X_13767056_SNP [dm6]	A	T	1.842e^-4	0.55	UPSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_twi
3L	3142275	3L_3142275_SNP [dm3] 3L_3142275_SNP [dm6]	T	A	1.843e^-4	0.55	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5237965	3L_5237965_SNP [dm3] 3L_5244865_SNP [dm6]	G	A	1.844e^-4	0.55	INTRON shep
2L	12177261	2L_12177261_DEL [dm3] 2L_12177261_DEL [dm6]	TAT	T	1.845e^-4	0.55	INTRON aret & 1 other	TF binding site BDTNP1_TFBS_z
3L	2834686	3L_2834686_SNP [dm3] 3L_2834686_SNP [dm6]	G	T	1.845e^-4	0.55	INTRON CG43444
3L	5237973	3L_5237973_SNP [dm3] 3L_5244873_SNP [dm6]	G	A	1.851e^-4	0.55	INTRON shep
3L	17683970	3L_17683970_DEL [dm3] 3L_17690870_DEL [dm6]	AGTG	A	1.860e^-4	0.55	INTRON Ccn
X	7481304	X_7481304_SNP [dm3] X_7587271_SNP [dm6]	G	T	1.865e^-4	0.55	INTERGENIC	regulatory region REDfly_CRMs
2L	5804246	2L_5804246_SNP [dm3] 2L_5804246_SNP [dm6]	C	T	1.867e^-4	0.55	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14357927	2R_14357927_SNP [dm3] 2R_18470422_SNP [dm6]	A	G	1.868e^-4	0.55	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20459087	X_20459087_SNP [dm3] X_20588060_SNP [dm6]	G	T	1.872e^-4	0.55	INTERGENIC
2R	14732687	2R_14732687_SNP [dm3] 2R_18845182_SNP [dm6]	A	G	1.873e^-4	0.55	SYNONYMOUS_CODING CG15099
3R	5392329	3R_5392329_SNP [dm3] 3R_9566607_SNP [dm6]	C	T	1.874e^-4	0.55	SYNONYMOUS_CODING CG16789 DOWNSTREAM Vps45	TF binding site mE1_TFBS_cad
3R	2098242	3R_2098242_SNP [dm3] 3R_6272520_SNP [dm6]	G	A	1.879e^-4	0.55	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9502854	3L_9502854_DEL [dm3] 3L_9509754_DEL [dm6]	AATA	A	1.879e^-4	0.55	UPSTREAM CG3408 DOWNSTREAM RpS9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11625339	3L_11625339_SNP [dm3] 3L_11632239_SNP [dm6]	A	G	1.883e^-4	0.55	DOWNSTREAM CR45158 INTRON CG32091
3R	21157386	3R_21157386_SNP [dm3] 3R_25331664_SNP [dm6]	T	C	1.883e^-4	0.55	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
3R	5704304	3R_5704304_SNP [dm3] 3R_9878582_SNP [dm6]	G	A	1.883e^-4	0.55	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18601221	X_18601221_SNP [dm3] X_18707188_SNP [dm6]	C	T	1.886e^-4	0.55	DOWNSTREAM CCKLR-17D1 INTERGENIC	TF binding site mE1_TFBS_sens
3R	6478496	3R_6478496_INS [dm3] 3R_10652774_INS [dm6]	A	AAAAACCTATGGAAAATTAC...	1.887e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	20549199	2L_20549199_SNP [dm3] 2L_20549199_SNP [dm6]	A	G	1.888e^-4	0.55	INTERGENIC
3L	9897728	3L_9897728_SNP [dm3] 3L_9904628_SNP [dm6]	A	T	1.891e^-4	0.55	INTERGENIC
3L	2444605	3L_2444605_SNP [dm3] 3L_2444605_SNP [dm6]	G	A	1.892e^-4	0.55	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad
X	8509181	X_8509181_SNP [dm3] X_8615148_SNP [dm6]	G	T	1.893e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	5752344	3R_5752344_SNP [dm3] 3R_9926622_SNP [dm6]	G	T	1.903e^-4	0.55	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	19130737	X_19130737_SNP [dm3] X_19236704_SNP [dm6]	G	A	1.906e^-4	0.55	SYNONYMOUS_CODING CG14196 DOWNSTREAM CG7884	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3008395	X_3008395_SNP [dm3] X_3114362_SNP [dm6]	T	C	1.909e^-4	0.55	INTRON kirre
2L	3929051	2L_3929051_SNP [dm3] 2L_3929051_SNP [dm6]	G	A	1.912e^-4	0.55	INTRON fred
X	10400173	X_10400173_SNP [dm3] X_10506140_SNP [dm6]	A	G	1.916e^-4	0.55	INTRON spri
3R	17412568	3R_17412568_SNP [dm3] 3R_21586846_SNP [dm6]	G	T	1.919e^-4	0.55	INTRON InR
2R	13803442	2R_13803442_SNP [dm3] 2R_17915937_SNP [dm6]	T	C	1.921e^-4	0.55	INTRON Elk
3R	15108614	3R_15108614_SNP [dm3] 3R_19282892_SNP [dm6]	C	G	1.922e^-4	0.55	INTERGENIC
3L	2789351	3L_2789351_SNP [dm3] 3L_2789351_SNP [dm6]	G	A	1.927e^-4	0.55	SYNONYMOUS_CODING CG43444	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13244254	X_13244254_SNP [dm3] X_13350221_SNP [dm6]	C	A	1.927e^-4	0.55	INTERGENIC
X	16617125	X_16617125_SNP [dm3] X_16723092_SNP [dm6]	C	T	1.929e^-4	0.55	INTRON CG32572	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12319145	2L_12319145_SNP [dm3] 2L_12319145_SNP [dm6]	T	C	1.933e^-4	0.55	INTERGENIC
2L	334299	2L_334299_DEL [dm3] 2L_334299_DEL [dm6]	CT	C	1.936e^-4	0.55	INTRON Plc21C	TF binding site mE1_TFBS_inv
X	20023978	X_20023978_SNP [dm3] X_20129945_SNP [dm6]	G	T	1.937e^-4	0.55	DOWNSTREAM CG42582 INTERGENIC	TF binding site mE1_TFBS_inv
3L	16214794	3L_16214794_DEL [dm3] 3L_16221694_DEL [dm6]	TTCCT	T	1.938e^-4	0.55	UPSTREAM tRNA:CR32153 INTERGENIC
2L	2373193	2L_2373193_SNP [dm3] 2L_2373193_SNP [dm6]	G	A	1.946e^-4	0.55	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18450990	3L_18450990_SNP [dm3] 3L_18457890_SNP [dm6]	C	A	1.947e^-4	0.55	UPSTREAM CR44671 INTERGENIC
X	4291333	X_4291333_SNP [dm3] X_4397300_SNP [dm6]	A	C	1.955e^-4	0.55	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	19497285	X_19497285_SNP [dm3] X_19603252_SNP [dm6]	A	G	1.956e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22278226	3R_22278226_SNP [dm3] 3R_26452504_SNP [dm6]	A	G	1.958e^-4	0.55	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
X	5162695	X_5162695_SNP [dm3] X_5268662_SNP [dm6]	C	G	1.958e^-4	0.55	INTERGENIC
3R	10682558	3R_10682558_SNP [dm3] 3R_14856836_SNP [dm6]	G	C	1.964e^-4	0.55	INTRON btsz
2L	135684	2L_135684_SNP [dm3] 2L_135684_SNP [dm6]	T	G	1.965e^-4	0.55	UPSTREAM CR44186 INTRON CG11455 EXON CR44185
X	22136720	X_22136720_SNP [dm3] X_22734884_SNP [dm6]	T	A	1.971e^-4	0.55	INTRON CR44997
X	22136722	X_22136722_SNP [dm3] X_22734886_SNP [dm6]	T	C	1.971e^-4	0.55	INTRON CR44997
3L	7439109	3L_7439109_SNP [dm3] 3L_7446009_SNP [dm6]	A	G	1.973e^-4	0.55	INTRON CG42458
3R	5831890	3R_5831890_SNP [dm3] 3R_10006168_SNP [dm6]	C	T	1.974e^-4	0.55	SYNONYMOUS_CODING Mical UTR_3_PRIME Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13965365	3R_13965365_SNP [dm3] 3R_18139643_SNP [dm6]	C	T	1.983e^-4	0.55	INTERGENIC
2L	16564004	2L_16564004_SNP [dm3] 2L_16564004_SNP [dm6]	T	C	1.986e^-4	0.55	INTRON CG42389
2L	18091419	2L_18091419_DEL [dm3] 2L_18091419_DEL [dm6]	GAATACGGCGAGAAG...	A	1.993e^-4	0.55	INTRON CG15153
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	2.003e^-4	0.55	INTRON kirre
2L	1994847	2L_1994847_SNP [dm3] 2L_1994847_SNP [dm6]	T	A	2.009e^-4	0.55	INTERGENIC
X	15869989	X_15869989_SNP [dm3] X_15975956_SNP [dm6]	T	C	2.014e^-4	0.55	UPSTREAM CG42766 INTRON Or13a
2L	17860359	2L_17860359_SNP [dm3] 2L_17860359_SNP [dm6]	C	A	2.014e^-4	0.55	INTRON CadN2
2L	17856345	2L_17856345_SNP [dm3] 2L_17856345_SNP [dm6]	G	A	2.014e^-4	0.55	INTRON CadN2	TF binding site mE1_TFBS_HSA
3L	10101469	3L_10101469_SNP [dm3] 3L_10108369_SNP [dm6]	A	G	2.014e^-4	0.55	INTRON dpr6
2R	5259826	2R_5259826_SNP [dm3] 2R_9372321_SNP [dm6]	G	A	2.016e^-4	0.55	INTRON CG13954	TF binding site mE1_TFBS_chinmo
2R	16987068	2R_16987068_SNP [dm3] 2R_21099563_SNP [dm6]	A	G	2.023e^-4	0.55	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	18163811	X_18163811_SNP [dm3] X_18269778_SNP [dm6]	G	A	2.024e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7998838	2L_7998838_SNP [dm3] 2L_7998838_SNP [dm6]	G	T	2.025e^-4	0.55	UPSTREAM Sirup & 1 other DOWNSTREAM Wwox INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	19439680	3L_19439680_SNP [dm3] 3L_19446580_SNP [dm6]	A	G	2.030e^-4	0.55	UPSTREAM Chd3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14723484	3R_14723484_SNP [dm3] 3R_18897762_SNP [dm6]	G	A	2.036e^-4	0.55	UPSTREAM CG14297 INTERGENIC
3L	4482287	3L_4482287_SNP [dm3] 3L_4482287_SNP [dm6]	C	A	2.039e^-4	0.55	UPSTREAM CG11350 DOWNSTREAM CG7465 INTERGENIC
3L	1467433	3L_1467433_SNP [dm3] 3L_1467433_SNP [dm6]	G	A	2.043e^-4	0.55	UTR_3_PRIME rho INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	14544975	2L_14544975_SNP [dm3] 2L_14544975_SNP [dm6]	C	G	2.045e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2847515	2L_2847515_SNP [dm3] 2L_2847515_SNP [dm6]	G	C	2.048e^-4	0.55	UPSTREAM CG2983 & 1 other INTERGENIC
3L	9652911	3L_9652911_SNP [dm3] 3L_9659811_SNP [dm6]	T	C	2.053e^-4	0.55	DOWNSTREAM CG33696 INTRON fry
2L	325595	2L_325595_SNP [dm3] 2L_325595_SNP [dm6]	C	A	2.056e^-4	0.55	UTR_3_PRIME CG43755 INTRON Plc21C
3L	18444611	3L_18444611_SNP [dm3] 3L_18451511_SNP [dm6]	C	A	2.059e^-4	0.55	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	12986433	2L_12986433_SNP [dm3] 2L_12986433_SNP [dm6]	A	T	2.060e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19721574	X_19721574_SNP [dm3] X_19827541_SNP [dm6]	A	G	2.063e^-4	0.55	INTERGENIC
X	19721577	X_19721577_SNP [dm3] X_19827544_SNP [dm6]	A	C	2.063e^-4	0.55	INTERGENIC
X	17750641	X_17750641_SNP [dm3] X_17856608_SNP [dm6]	G	A	2.065e^-4	0.55	UPSTREAM CG6762 & 1 other DOWNSTREAM CR43981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	128046	2L_128046_SNP [dm3] 2L_128046_SNP [dm6]	G	A	2.068e^-4	0.55	INTRON CG11455 & 1 other	TF binding site mE1_TFBS_Trl
2R	13290382	2R_13290382_SNP [dm3] 2R_17402877_SNP [dm6]	T	G	2.069e^-4	0.55	INTRON Sip1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4519298	3L_4519298_SNP [dm3] 3L_4519298_SNP [dm6]	A	T	2.073e^-4	0.55	INTRON Tie
3R	22278333	3R_22278333_SNP [dm3] 3R_26452611_SNP [dm6]	T	C	2.075e^-4	0.55	UTR_5_PRIME CG5447 DOWNSTREAM Hex-t2
2L	8886011	2L_8886011_SNP [dm3] 2L_8886011_SNP [dm6]	A	T	2.079e^-4	0.55	DOWNSTREAM CR44415 INTERGENIC
X	7725807	X_7725807_SNP [dm3] X_7831774_SNP [dm6]	G	A	2.080e^-4	0.55	INTRON CG1402
2R	12354829	2R_12354829_SNP [dm3] 2R_16467324_SNP [dm6]	C	A	2.082e^-4	0.55	SYNONYMOUS_CODING CheB53a UPSTREAM CheB53b
2R	4578823	2R_4578823_SNP [dm3] 2R_8691318_SNP [dm6]	T	C	2.083e^-4	0.55	UPSTREAM Jon44E INTERGENIC
2L	4561981	2L_4561981_SNP [dm3] 2L_4561981_SNP [dm6]	T	A	2.084e^-4	0.55	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	11036343	2L_11036343_INS [dm3] 2L_11036343_INS [dm6]	A	AAAAGGATCTTTTAATTTG...	2.084e^-4	0.55	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	310358	2L_310358_SNP [dm3] 2L_310358_SNP [dm6]	T	A	2.089e^-4	0.55	UTR_5_PRIME Plc21C INTRON Plc21C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18149592	2R_18149592_SNP [dm3] 2R_22262087_SNP [dm6]	T	A	2.090e^-4	0.55	INTRON dve
3R	13271285	3R_13271285_SNP [dm3] 3R_17445563_SNP [dm6]	T	A	2.091e^-4	0.55	SPLICE_SITE_REGION CG5873 INTRON CG5873
3L	4092421	3L_4092421_SNP [dm3] 3L_4092421_SNP [dm6]	T	C	2.091e^-4	0.55	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20955351	X_20955351_SNP [dm3] X_21084324_SNP [dm6]	G	A	2.093e^-4	0.55	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7947915	3L_7947915_SNP [dm3] 3L_7954815_SNP [dm6]	A	T	2.097e^-4	0.55	INTERGENIC
2L	15801346	2L_15801346_SNP [dm3] 2L_15801346_SNP [dm6]	C	T	2.102e^-4	0.55	INTERGENIC
2L	8880094	2L_8880094_SNP [dm3] 2L_8880094_SNP [dm6]	C	T	2.104e^-4	0.55	INTERGENIC
3R	13063793	3R_13063793_SNP [dm3] 3R_17238071_SNP [dm6]	A	T	2.105e^-4	0.55	INTRON beat-IIb
X	16617330	X_16617330_SNP [dm3] X_16723297_SNP [dm6]	A	T	2.107e^-4	0.55	INTRON CG32572	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21017758	3R_21017758_SNP [dm3] 3R_25192036_SNP [dm6]	G	A	2.112e^-4	0.55	NON_SYNONYMOUS_CODING dan UTR_3_PRIME dan INTRON lobo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5847555	3R_5847555_SNP [dm3] 3R_10021833_SNP [dm6]	C	T	2.117e^-4	0.55	UTR_5_PRIME Mical UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_inv
3L	5252550	3L_5252550_SNP [dm3] 3L_5259450_SNP [dm6]	G	A	2.123e^-4	0.55	INTRON shep
2L	1714758	2L_1714758_SNP [dm3] 2L_1714758_SNP [dm6]	C	G	2.125e^-4	0.55	INTRON frtz	TF binding site mE1_TFBS_chinmo
3R	25002954	3R_25002954_SNP [dm3] 3R_29177232_SNP [dm6]	C	T	2.129e^-4	0.55	INTRON CG14509
2R	15818415	2R_15818415_SNP [dm3] 2R_19930910_SNP [dm6]	A	G	2.134e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9888993	3L_9888993_SNP [dm3] 3L_9895893_SNP [dm6]	G	T	2.143e^-4	0.55	INTRON CG6707
3R	5148912	3R_5148912_DEL [dm3] 3R_9323190_DEL [dm6]	GA	G	2.147e^-4	0.55	DOWNSTREAM HP1e INTRON CG8861
X	5448107	X_5448107_SNP [dm3] X_5554074_SNP [dm6]	T	C	2.150e^-4	0.55	INTRON Vsx2
2L	12319098	2L_12319098_SNP [dm3] 2L_12319098_SNP [dm6]	T	A	2.154e^-4	0.55	INTERGENIC
3R	18969955	3R_18969955_SNP [dm3] 3R_23144233_SNP [dm6]	G	A	2.166e^-4	0.55	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25240156	3R_25240156_SNP [dm3] 3R_29414434_SNP [dm6]	C	T	2.171e^-4	0.55	INTRON Ptp99A
3R	25240158	3R_25240158_SNP [dm3] 3R_29414436_SNP [dm6]	A	C	2.171e^-4	0.55	INTRON Ptp99A
3R	25240160	3R_25240160_DEL [dm3] 3R_29414438_DEL [dm6]	CTGAATA	C	2.171e^-4	0.55	INTRON Ptp99A
3R	25240168	3R_25240168_SNP [dm3] 3R_29414446_SNP [dm6]	T	C	2.171e^-4	0.55	INTRON Ptp99A
3R	25240182	3R_25240182_SNP [dm3] 3R_29414460_SNP [dm6]	C	T	2.171e^-4	0.55	INTRON Ptp99A
3R	25240187	3R_25240187_SNP [dm3] 3R_29414465_SNP [dm6]	T	C	2.171e^-4	0.55	INTRON Ptp99A
2L	257694	2L_257694_SNP [dm3] 2L_257694_SNP [dm6]	G	A	2.172e^-4	0.55	INTRON CG3645
3L	9344978	3L_9344978_SNP [dm3] 3L_9351878_SNP [dm6]	T	A	2.174e^-4	0.55	DOWNSTREAM PGRP-LF INTRON UGP
3R	24706846	3R_24706846_SNP [dm3] 3R_28881124_SNP [dm6]	A	T	2.175e^-4	0.55	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
2R	5317318	2R_5317318_SNP [dm3] 2R_9429813_SNP [dm6]	G	A	2.175e^-4	0.55	INTRON Pdk
2R	9869220	2R_9869220_SNP [dm3] 2R_13981715_SNP [dm6]	G	A	2.177e^-4	0.55	SYNONYMOUS_CODING Ctf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16430361	2L_16430361_SNP [dm3] 2L_16430361_SNP [dm6]	T	A	2.177e^-4	0.55	INTRON CG5888
3R	24088645	3R_24088645_SNP [dm3] 3R_28262923_SNP [dm6]	C	T	2.187e^-4	0.55	NON_SYNONYMOUS_CODING CG43125 DOWNSTREAM CG43124
2L	326690	2L_326690_SNP [dm3] 2L_326690_SNP [dm6]	C	T	2.187e^-4	0.55	DOWNSTREAM CG43755 INTRON Plc21C & 1 other
3L	4487786	3L_4487786_SNP [dm3] 3L_4487786_SNP [dm6]	A	T	2.188e^-4	0.55	INTRON CG13722
3R	14723325	3R_14723325_SNP [dm3] 3R_18897603_SNP [dm6]	T	A	2.189e^-4	0.55	UPSTREAM CG14297 INTERGENIC
X	5251079	X_5251079_SNP [dm3] X_5357046_SNP [dm6]	A	G	2.190e^-4	0.55	INTRON SK
3L	9897570	3L_9897570_SNP [dm3] 3L_9904470_SNP [dm6]	T	G	2.194e^-4	0.55	INTERGENIC
X	10384454	X_10384454_SNP [dm3] X_10490421_SNP [dm6]	G	C	2.195e^-4	0.55	UTR_3_PRIME spri DOWNSTREAM spri
2L	11484811	2L_11484811_SNP [dm3] 2L_11484811_SNP [dm6]	G	A	2.202e^-4	0.55	UTR_5_PRIME sala & 1 other UPSTREAM CG43355	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5805571	2L_5805571_SNP [dm3] 2L_5805571_SNP [dm6]	G	T	2.207e^-4	0.55	SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	6405045	2L_6405045_SNP [dm3] 2L_6405045_SNP [dm6]	C	T	2.207e^-4	0.55	INTRON CG42368
2L	5804468	2L_5804468_SNP [dm3] 2L_5804468_SNP [dm6]	G	A	2.216e^-4	0.55	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11041805	2R_11041805_SNP [dm3] 2R_15154300_SNP [dm6]	T	A	2.221e^-4	0.55	INTERGENIC
3L	9593441	3L_9593441_SNP [dm3] 3L_9600341_SNP [dm6]	G	A	2.225e^-4	0.55	UTR_3_PRIME CG3222 DOWNSTREAM CG3088
2R	18974219	2R_18974219_SNP [dm3] 2R_23086696_SNP [dm6]	A	T	2.229e^-4	0.55	UPSTREAM CG13538 & 1 other INTERGENIC
X	17262440	X_17262440_SNP [dm3] X_17368407_SNP [dm6]	T	C	2.231e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	12652599	3R_12652599_SNP [dm3] 3R_16826877_SNP [dm6]	G	C	2.232e^-4	0.55	INTRON abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	14990262	2R_14990262_SNP [dm3] 2R_19102757_SNP [dm6]	G	C	2.233e^-4	0.55	INTRON 5-HT1A
3R	13557899	3R_13557899_SNP [dm3] 3R_17732177_SNP [dm6]	C	T	2.237e^-4	0.55	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	2.239e^-4	0.55	INTRON Pdp1
2L	10450742	2L_10450742_SNP [dm3] 2L_10450742_SNP [dm6]	A	G	2.243e^-4	0.55	SPLICE_SITE_REGION ppk10 DOWNSTREAM loh INTRON ppk10
3L	18448013	3L_18448013_SNP [dm3] 3L_18454913_SNP [dm6]	G	A	2.247e^-4	0.55	INTERGENIC
2L	10183333	2L_10183333_SNP [dm3] 2L_10183333_SNP [dm6]	A	G	2.247e^-4	0.55	INTRON Sur
3R	6501185	3R_6501185_SNP [dm3] 3R_10675463_SNP [dm6]	T	A	2.249e^-4	0.55	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
2R	15106793	2R_15106793_SNP [dm3] 2R_19219288_SNP [dm6]	A	G	2.251e^-4	0.55	INTRON hppy
X	19158783	X_19158783_SNP [dm3] X_19264750_SNP [dm6]	A	G	2.252e^-4	0.55	NON_SYNONYMOUS_CODING Vav INTRON Vav	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5403133	2L_5403133_SNP [dm3] 2L_5403133_SNP [dm6]	A	G	2.255e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15515037	3R_15515037_SNP [dm3] 3R_19689315_SNP [dm6]	G	A	2.258e^-4	0.55	INTRON Naam
X	12107452	X_12107452_SNP [dm3] X_12213419_SNP [dm6]	A	T	2.258e^-4	0.55	INTRON Ten-a
3L	4138557	3L_4138557_SNP [dm3] 3L_4138557_SNP [dm6]	A	G	2.264e^-4	0.55	SYNONYMOUS_CODING Rop UPSTREAM Ras64B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	2.270e^-4	0.55	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	10334107	X_10334107_SNP [dm3] X_10440074_SNP [dm6]	A	C	2.272e^-4	0.55	INTRON CG32683
X	20235464	X_20235464_SNP [dm3] X_20364437_SNP [dm6]	A	C	2.274e^-4	0.55	INTERGENIC
X	1697713	X_1697713_SNP [dm3] X_1803680_SNP [dm6]	G	A	2.276e^-4	0.55	INTRON CG42666	TF binding site mE1_TFBS_chinmo
2R	3602637	2R_3602637_SNP [dm3] 2R_7715132_SNP [dm6]	A	G	2.277e^-4	0.55	DOWNSTREAM CG1942 INTRON CG1946
3L	4272801	3L_4272801_SNP [dm3] 3L_4272801_SNP [dm6]	T	G	2.281e^-4	0.55	INTRON CG1273	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1278434	3L_1278434_SNP [dm3] 3L_1278434_SNP [dm6]	C	A	2.286e^-4	0.55	INTRON CG32333
3L	4483562	3L_4483562_SNP [dm3] 3L_4483562_SNP [dm6]	G	T	2.290e^-4	0.55	SYNONYMOUS_CODING CG11350
2L	7568151	2L_7568151_DEL [dm3] 2L_7568151_DEL [dm6]	AC	A	2.292e^-4	0.55	INTRON RapGAP1
X	5734163	X_5734163_SNP [dm3] X_5840130_SNP [dm6]	T	C	2.295e^-4	0.55	UTR_3_PRIME CG15765 DOWNSTREAM CG15765
3L	18447385	3L_18447385_SNP [dm3] 3L_18454285_SNP [dm6]	G	T	2.301e^-4	0.55	INTERGENIC
2R	18512212	2R_18512212_SNP [dm3] 2R_22624707_SNP [dm6]	T	A	2.302e^-4	0.55	INTRON CG33143
X	16616436	X_16616436_SNP [dm3] X_16722403_SNP [dm6]	A	C	2.307e^-4	0.55	NON_SYNONYMOUS_CODING CG32572 UPSTREAM CG34325
3R	19303469	3R_19303469_SNP [dm3] 3R_23477747_SNP [dm6]	G	A	2.307e^-4	0.55	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6513908	2L_6513908_SNP [dm3] 2L_6513908_SNP [dm6]	A	G	2.308e^-4	0.55	INTRON CG31637	TF binding site BDTNP1_TFBS_twi
X	10292462	X_10292462_INS [dm3] X_10398429_INS [dm6]	A	AA	2.309e^-4	0.55	INTRON flw
X	19157444	X_19157444_SNP [dm3] X_19263411_SNP [dm6]	G	A	2.314e^-4	0.55	INTRON Vav
X	14366999	X_14366999_SNP [dm3] X_14472966_SNP [dm6]	G	A	2.320e^-4	0.55	SYNONYMOUS_CODING CG9411	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21157319	3R_21157319_SNP [dm3] 3R_25331597_SNP [dm6]	T	A	2.322e^-4	0.55	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
3L	2152096	3L_2152096_SNP [dm3] 3L_2152096_SNP [dm6]	A	T	2.330e^-4	0.55	UPSTREAM zormin INTERGENIC	TF binding site mE1_TFBS_Trl
3R	16174366	3R_16174366_SNP [dm3] 3R_20348644_SNP [dm6]	G	A	2.334e^-4	0.55	INTERGENIC
X	15479915	X_15479915_SNP [dm3] X_15585882_SNP [dm6]	C	T	2.335e^-4	0.55	UTR_3_PRIME CG9220 DOWNSTREAM CG8097	TF binding site mE1_TFBS_cad
3R	14088649	3R_14088649_SNP [dm3] 3R_18262927_SNP [dm6]	T	G	2.344e^-4	0.55	INTERGENIC
2L	13227367	2L_13227367_SNP [dm3] 2L_13227367_SNP [dm6]	C	T	2.345e^-4	0.55	UPSTREAM CG16813 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10450461	2L_10450461_SNP [dm3] 2L_10450461_SNP [dm6]	T	A	2.347e^-4	0.55	DOWNSTREAM loh INTRON ppk10
2L	215720	2L_215720_SNP [dm3] 2L_215720_SNP [dm6]	G	A	2.350e^-4	0.55	INTRON kis	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13841943	2L_13841943_SNP [dm3] 2L_13841943_SNP [dm6]	G	A	2.353e^-4	0.55	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3L	3929673	3L_3929673_SNP [dm3] 3L_3929673_SNP [dm6]	C	A	2.354e^-4	0.55	UPSTREAM Eip63F-1 INTRON Eip63F-1
3L	12015393	3L_12015393_SNP [dm3] 3L_12022293_SNP [dm6]	C	T	2.358e^-4	0.55	INTRON rols
3L	18448104	3L_18448104_SNP [dm3] 3L_18455004_SNP [dm6]	T	C	2.361e^-4	0.55	INTERGENIC
2L	11066160	2L_11066160_SNP [dm3] 2L_11066160_SNP [dm6]	T	C	2.364e^-4	0.55	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21157313	3R_21157313_SNP [dm3] 3R_25331591_SNP [dm6]	C	T	2.368e^-4	0.55	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
2L	4503737	2L_4503737_SNP [dm3] 2L_4503737_SNP [dm6]	C	T	2.369e^-4	0.55	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	961082	3R_961082_SNP [dm3] 3R_5135360_SNP [dm6]	G	A	2.372e^-4	0.55	INTERGENIC
2R	14072871	2R_14072871_SNP [dm3] 2R_18185366_SNP [dm6]	A	T	2.375e^-4	0.55	SYNONYMOUS_CODING CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1664046	2L_1664046_SNP [dm3] 2L_1664046_SNP [dm6]	T	C	2.378e^-4	0.55	INTRON chinmo
3L	9344982	3L_9344982_SNP [dm3] 3L_9351882_SNP [dm6]	G	A	2.378e^-4	0.55	DOWNSTREAM PGRP-LF INTRON UGP
3L	9344980	3L_9344980_SNP [dm3] 3L_9351880_SNP [dm6]	G	A	2.381e^-4	0.55	DOWNSTREAM PGRP-LF INTRON UGP
2L	10562410	2L_10562410_SNP [dm3] 2L_10562410_SNP [dm6]	C	A	2.382e^-4	0.55	INTRON Trim9
2R	18434386	2R_18434386_SNP [dm3] 2R_22546881_SNP [dm6]	T	C	2.383e^-4	0.55	UPSTREAM px INTRON px	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3796715	X_3796715_SNP [dm3] X_3902682_SNP [dm6]	A	C	2.385e^-4	0.55	INTRON CG42541
X	5208441	X_5208441_SNP [dm3] X_5314408_SNP [dm6]	G	C	2.387e^-4	0.55	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11048312	3L_11048312_SNP [dm3] 3L_11055212_SNP [dm6]	T	C	2.389e^-4	0.55	UPSTREAM CG7888 INTRON CG7888
X	7488603	X_7488603_SNP [dm3] X_7594570_SNP [dm6]	A	G	2.394e^-4	0.551	INTERGENIC	regulatory region REDfly_CRMs
3R	26788438	3R_26788438_SNP [dm3] 3R_30962716_SNP [dm6]	G	C	2.401e^-4	0.552	DOWNSTREAM Ctr1C & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14367471	X_14367471_SNP [dm3] X_14473438_SNP [dm6]	G	T	2.404e^-4	0.552	SYNONYMOUS_CODING CG9411	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16622702	X_16622702_SNP [dm3] X_16728669_SNP [dm6]	T	A	2.407e^-4	0.552	INTRON CG9634
3R	5424509	3R_5424509_SNP [dm3] 3R_9598787_SNP [dm6]	T	A	2.409e^-4	0.552	INTRON CG8312	TF binding site BDTNP1_TFBS_hb
3R	15260872	3R_15260872_SNP [dm3] 3R_19435150_SNP [dm6]	T	C	2.417e^-4	0.552	INTRON CG31221
2L	8886012	2L_8886012_SNP [dm3] 2L_8886012_SNP [dm6]	C	T	2.420e^-4	0.552	DOWNSTREAM CR44415 INTERGENIC
X	3784967	X_3784967_SNP [dm3] X_3890934_SNP [dm6]	G	A	2.422e^-4	0.552	DOWNSTREAM CG15239 & 1 other INTERGENIC
2R	17660986	2R_17660986_SNP [dm3] 2R_21773481_SNP [dm6]	A	G	2.428e^-4	0.552	NON_SYNONYMOUS_CODING CG4021
2L	2759909	2L_2759909_SNP [dm3] 2L_2759909_SNP [dm6]	A	T	2.428e^-4	0.552	UPSTREAM Trn-SR & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	16891399	X_16891399_SNP [dm3] X_16997366_SNP [dm6]	T	A	2.429e^-4	0.552	INTRON CG45002
3L	21202252	3L_21202252_SNP [dm3] 3L_21209152_SNP [dm6]	C	T	2.431e^-4	0.552	SYNONYMOUS_CODING CG10510	TF binding site mE1_TFBS_cad
2L	4564915	2L_4564915_SNP [dm3] 2L_4564915_SNP [dm6]	A	C	2.433e^-4	0.552	INTRON dp
3R	4791819	3R_4791819_INS [dm3] 3R_8966097_INS [dm6]	G	GCTATAAAC	2.438e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20235500	X_20235500_SNP [dm3] X_20364473_SNP [dm6]	C	G	2.451e^-4	0.552	INTERGENIC
X	20281059	X_20281059_SNP [dm3] X_20410032_SNP [dm6]	C	A	2.453e^-4	0.552	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	14493142	X_14493142_SNP [dm3] X_14599109_SNP [dm6]	C	T	2.455e^-4	0.552	INTRON CG9413
3R	21647859	3R_21647859_SNP [dm3] 3R_25822137_SNP [dm6]	T	A	2.455e^-4	0.552	INTERGENIC
2L	15801299	2L_15801299_SNP [dm3] 2L_15801299_SNP [dm6]	G	C	2.456e^-4	0.552	INTERGENIC
2L	12207776	2L_12207776_SNP [dm3] 2L_12207776_SNP [dm6]	C	T	2.456e^-4	0.552	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
X	1630545	X_1630545_DEL [dm3] X_1736512_DEL [dm6]	TTT	C	2.458e^-4	0.552	UTR_3_PRIME Scgdelta
3L	8575723	3L_8575723_SNP [dm3] 3L_8582623_SNP [dm6]	C	T	2.461e^-4	0.552	UPSTREAM CG43078 INTRON CG43078
2L	3937284	2L_3937284_SNP [dm3] 2L_3937284_SNP [dm6]	A	C	2.466e^-4	0.552	INTRON fred
X	10667985	X_10667985_SNP [dm3] X_10773952_SNP [dm6]	C	T	2.485e^-4	0.552	INTRON CG15211
3R	7321692	3R_7321692_SNP [dm3] 3R_11495970_SNP [dm6]	C	T	2.486e^-4	0.552	INTERGENIC
3R	453965	3R_453965_SNP [dm3] 3R_4628243_SNP [dm6]	T	C	2.488e^-4	0.552	NON_SYNONYMOUS_CODING 5-HT2A	TF binding site mE1_TFBS_inv
3R	814548	3R_814548_SNP [dm3] 3R_4988826_SNP [dm6]	T	A	2.491e^-4	0.552	INTRON CG2022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	5944856	3R_5944856_SNP [dm3] 3R_10119134_SNP [dm6]	A	G	2.500e^-4	0.552	NON_SYNONYMOUS_CODING CG3940
3R	6464772	3R_6464772_SNP [dm3] 3R_10639050_SNP [dm6]	G	A	2.506e^-4	0.552	UTR_5_PRIME hth UPSTREAM CR44018	TF binding site BDTNP1_TFBS_dl
3R	19127082	3R_19127082_SNP [dm3] 3R_23301360_SNP [dm6]	T	G	2.508e^-4	0.552	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15346836	X_15346836_SNP [dm3] X_15452803_SNP [dm6]	C	T	2.515e^-4	0.552	UTR_3_PRIME Ahcy13 UPSTREAM CG11655 DOWNSTREAM Ahcy13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3014886	3L_3014886_SNP [dm3] 3L_3014886_SNP [dm6]	A	T	2.518e^-4	0.552	UTR_3_PRIME CG32488 DOWNSTREAM CG32488
2L	1231780	2L_1231780_SNP [dm3] 2L_1231780_SNP [dm6]	C	T	2.523e^-4	0.552	INTERGENIC
X	10441028	X_10441028_SNP [dm3] X_10546995_SNP [dm6]	A	G	2.526e^-4	0.552	UPSTREAM spri INTRON spri	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22527071	3R_22527071_INS [dm3] 3R_26701349_INS [dm6]	A	ACATACATA	2.529e^-4	0.552	INTRON amon
2L	8880090	2L_8880090_SNP [dm3] 2L_8880090_SNP [dm6]	T	A	2.530e^-4	0.552	INTERGENIC
2L	16330410	2L_16330410_SNP [dm3] 2L_16330410_SNP [dm6]	T	C	2.533e^-4	0.552	UTR_3_PRIME CG4440 DOWNSTREAM CG31817 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12696254	3R_12696254_SNP [dm3] 3R_16870532_SNP [dm6]	T	A	2.535e^-4	0.552	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	4488581	2L_4488581_SNP [dm3] 2L_4488581_SNP [dm6]	A	C	2.558e^-4	0.552	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12308554	3L_12308554_SNP [dm3] 3L_12315454_SNP [dm6]	A	T	2.559e^-4	0.552	INTERGENIC
X	19664029	X_19664029_SNP [dm3] X_19769996_SNP [dm6]	C	T	2.563e^-4	0.552	INTRON vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10151471	3R_10151471_SNP [dm3] 3R_14325749_SNP [dm6]	T	A	2.566e^-4	0.552	NON_SYNONYMOUS_CODING Afti	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	17990210	2L_17990210_SNP [dm3] 2L_17990210_SNP [dm6]	A	G	2.567e^-4	0.552	UPSTREAM Prosbeta5R2 INTERGENIC
3L	16329624	3L_16329624_SNP [dm3] 3L_16336524_SNP [dm6]	A	G	2.567e^-4	0.552	INTERGENIC
2L	2372938	2L_2372938_SNP [dm3] 2L_2372938_SNP [dm6]	A	C	2.572e^-4	0.552	SYNONYMOUS_CODING CG3609	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3574136	2L_3574136_SNP [dm3] 2L_3574136_SNP [dm6]	A	T	2.572e^-4	0.552	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	9949276	3L_9949276_SNP [dm3] 3L_9956176_SNP [dm6]	T	C	2.573e^-4	0.552	INTRON CG34356
2L	934798	2L_934798_SNP [dm3] 2L_934798_SNP [dm6]	C	T	2.575e^-4	0.552	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13617667	X_13617667_SNP [dm3] X_13723634_SNP [dm6]	C	A	2.576e^-4	0.552	SYNONYMOUS_CODING mus101	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8508691	3L_8508691_SNP [dm3] 3L_8515591_SNP [dm6]	C	A	2.577e^-4	0.552	SYNONYMOUS_CODING CG6765 UPSTREAM CG6683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16695991	X_16695991_SNP [dm3] X_16801958_SNP [dm6]	G	A	2.577e^-4	0.552	UTR_3_PRIME CG4789 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	1668356	3R_1668356_SNP [dm3] 3R_5842634_SNP [dm6]	T	G	2.583e^-4	0.552	INTRON CG1213
3L	1678471	3L_1678471_SNP [dm3] 3L_1678471_SNP [dm6]	G	T	2.583e^-4	0.552	INTRON CG7991	TF binding site mE1_TFBS_chinmo
3L	6989164	3L_6989164_SNP [dm3] 3L_6996064_SNP [dm6]	G	A	2.583e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_inv mE1_TFBS_zfh1
X	18164042	X_18164042_SNP [dm3] X_18270009_SNP [dm6]	C	T	2.588e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	9913133	2R_9913133_SNP [dm3] 2R_14025628_SNP [dm6]	A	T	2.596e^-4	0.552	INTRON mam	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	10398360	X_10398360_SNP [dm3] X_10504327_SNP [dm6]	G	T	2.597e^-4	0.552	INTRON spri
3R	5919720	3R_5919720_SNP [dm3] 3R_10093998_SNP [dm6]	A	T	2.599e^-4	0.552	EXON CR43459	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19948805	X_19948805_SNP [dm3] X_20054772_SNP [dm6]	T	C	2.602e^-4	0.552	INTRON Dop2R
2L	385547	2L_385547_SNP [dm3] 2L_385547_SNP [dm6]	T	A	2.606e^-4	0.552	INTRON al
2L	4008505	2L_4008505_SNP [dm3] 2L_4008505_SNP [dm6]	T	G	2.607e^-4	0.552	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3R	24107495	3R_24107495_SNP [dm3] 3R_28281773_SNP [dm6]	C	T	2.610e^-4	0.552	UPSTREAM CG34436 INTERGENIC
3L	1720617	3L_1720617_SNP [dm3] 3L_1720617_SNP [dm6]	T	A	2.612e^-4	0.552	UTR_3_PRIME CG18171 INTRON drpr
2L	338762	2L_338762_SNP [dm3] 2L_338762_SNP [dm6]	G	T	2.616e^-4	0.552	INTRON Plc21C
2L	1994775	2L_1994775_SNP [dm3] 2L_1994775_SNP [dm6]	A	C	2.619e^-4	0.552	INTERGENIC
X	10127906	X_10127906_DEL [dm3] X_10233873_DEL [dm6]	TTT	T	2.622e^-4	0.552	UTR_3_PRIME Hk UPSTREAM Ipod DOWNSTREAM Hk
2L	9814448	2L_9814448_SNP [dm3] 2L_9814448_SNP [dm6]	C	T	2.623e^-4	0.552	INTRON nAChRalpha6
2R	18399890	2R_18399890_SNP [dm3] 2R_22512385_SNP [dm6]	A	G	2.627e^-4	0.552	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18209772	3L_18209772_SNP [dm3] 3L_18216672_SNP [dm6]	C	G	2.629e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12677978	3R_12677978_SNP [dm3] 3R_16852256_SNP [dm6]	A	C	2.636e^-4	0.552	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21157341	3R_21157341_SNP [dm3] 3R_25331619_SNP [dm6]	C	T	2.636e^-4	0.552	UTR_3_PRIME CG10669 UPSTREAM CHKov2 DOWNSTREAM CG10669
2L	7630317	2L_7630317_SNP [dm3] 2L_7630317_SNP [dm6]	C	T	2.643e^-4	0.552	INTERGENIC
2L	16429759	2L_16429759_SNP [dm3] 2L_16429759_SNP [dm6]	T	A	2.644e^-4	0.552	INTRON CG5888
2L	16430577	2L_16430577_SNP [dm3] 2L_16430577_SNP [dm6]	G	T	2.644e^-4	0.552	INTRON CG5888
2L	16430642	2L_16430642_SNP [dm3] 2L_16430642_SNP [dm6]	C	T	2.644e^-4	0.552	INTRON CG5888
3R	11590189	3R_11590189_SNP [dm3] 3R_15764467_SNP [dm6]	G	A	2.650e^-4	0.552	DOWNSTREAM CG12784 INTERGENIC
X	22322955	X_22322955_DEL [dm3] X_22921119_DEL [dm6]	AA	A	2.651e^-4	0.552	INTERGENIC
2R	17015514	2R_17015514_SNP [dm3] 2R_21128009_SNP [dm6]	A	G	2.652e^-4	0.552	UPSTREAM mago & 1 other INTRON CG4050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18817356	3L_18817356_SNP [dm3] 3L_18824256_SNP [dm6]	A	G	2.652e^-4	0.552	INTRON Cat
2L	13020068	2L_13020068_DEL [dm3] 2L_13020068_DEL [dm6]	AAA	A	2.652e^-4	0.552	UPSTREAM CG9934 INTRON A16	TF binding site mE1_TFBS_cad
2L	6102446	2L_6102446_SNP [dm3] 2L_6102446_SNP [dm6]	T	A	2.655e^-4	0.552	INTRON stai
2L	8588302	2L_8588302_SNP [dm3] 2L_8588302_SNP [dm6]	G	A	2.659e^-4	0.552	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	8606736	3L_8606736_SNP [dm3] 3L_8613636_SNP [dm6]	C	T	2.662e^-4	0.552	INTRON CG6282
X	12722960	X_12722960_SNP [dm3] X_12828927_SNP [dm6]	G	T	2.663e^-4	0.552	INTRON Pde9
3R	9955331	3R_9955331_SNP [dm3] 3R_14129609_SNP [dm6]	C	T	2.668e^-4	0.552	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	10913373	3R_10913373_SNP [dm3] 3R_15087651_SNP [dm6]	C	T	2.670e^-4	0.552	INTRON CG6966
3R	21157605	3R_21157605_SNP [dm3] 3R_25331883_SNP [dm6]	A	G	2.670e^-4	0.552	SYNONYMOUS_CODING CG10669 UPSTREAM CHKov2	TF binding site mE1_TFBS_cad
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	2.675e^-4	0.552	INTRON rgr	TF binding site mE1_TFBS_cad
3R	7811976	3R_7811976_SNP [dm3] 3R_11986254_SNP [dm6]	A	G	2.676e^-4	0.552	INTRON mfas	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15467712	3L_15467712_INS [dm3] 3L_15474612_INS [dm6]	T	TT	2.677e^-4	0.552	UPSTREAM CG7804 INTERGENIC
3L	3141354	3L_3141354_SNP [dm3] 3L_3141354_SNP [dm6]	G	T	2.686e^-4	0.552	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	11033203	2L_11033203_SNP [dm3] 2L_11033203_SNP [dm6]	G	A	2.687e^-4	0.552	INTRON Samuel
3L	7272895	3L_7272895_SNP [dm3] 3L_7279795_SNP [dm6]	A	T	2.696e^-4	0.552	INTRON unc-13-4A
3L	8616219	3L_8616219_SNP [dm3] 3L_8623119_SNP [dm6]	T	G	2.700e^-4	0.552	SYNONYMOUS_CODING GAPsec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8260433	X_8260433_SNP [dm3] X_8366400_SNP [dm6]	G	A	2.705e^-4	0.552	INTRON nAChRalpha3
3L	3325869	3L_3325869_SNP [dm3] 3L_3325869_SNP [dm6]	C	T	2.706e^-4	0.552	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5876087	3R_5876087_SNP [dm3] 3R_10050365_SNP [dm6]	C	T	2.712e^-4	0.552	SYNONYMOUS_CODING CG3925	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25360514	3R_25360514_SNP [dm3] 3R_29534792_SNP [dm6]	T	A	2.712e^-4	0.552	INTRON CR43613	TF binding site mE1_TFBS_chinmo
2R	17723380	2R_17723380_SNP [dm3] 2R_21835875_SNP [dm6]	A	G	2.713e^-4	0.552	UPSTREAM CG4363 INTRON CG4377
3R	24705381	3R_24705381_SNP [dm3] 3R_28879659_SNP [dm6]	T	C	2.721e^-4	0.552	SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15992303	2R_15992303_SNP [dm3] 2R_20104798_SNP [dm6]	C	A	2.721e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2L	943557	2L_943557_SNP [dm3] 2L_943557_SNP [dm6]	A	G	2.722e^-4	0.552	INTRON CG4341
3R	25240152	3R_25240152_SNP [dm3] 3R_29414430_SNP [dm6]	G	C	2.724e^-4	0.552	INTRON Ptp99A
2L	10014484	2L_10014484_SNP [dm3] 2L_10014484_SNP [dm6]	A	G	2.724e^-4	0.552	SYNONYMOUS_CODING CG13131
2L	2309316	2L_2309316_SNP [dm3] 2L_2309316_SNP [dm6]	T	C	2.724e^-4	0.552	DOWNSTREAM CG16995 INTRON CG9967	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10927750	X_10927750_INS [dm3] X_11033717_INS [dm6]	A	ATTAACAAATTTTA...	2.725e^-4	0.552	INTRON CG42339
X	20206883	X_20206883_SNP [dm3] X_20335856_SNP [dm6]	C	T	2.732e^-4	0.552	INTERGENIC
3L	18447243	3L_18447243_SNP [dm3] 3L_18454143_SNP [dm6]	T	A	2.739e^-4	0.552	INTERGENIC
3L	18448765	3L_18448765_SNP [dm3] 3L_18455665_SNP [dm6]	A	T	2.740e^-4	0.552	DOWNSTREAM CR44670 INTERGENIC
3R	18334154	3R_18334154_SNP [dm3] 3R_22508432_SNP [dm6]	T	A	2.749e^-4	0.552	INTRON Octbeta1R
2L	900611	2L_900611_SNP [dm3] 2L_900611_SNP [dm6]	C	A	2.749e^-4	0.552	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25877895	3R_25877895_SNP [dm3] 3R_30052173_SNP [dm6]	G	A	2.750e^-4	0.552	UPSTREAM CG7946 & 1 other EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12722141	X_12722141_SNP [dm3] X_12828108_SNP [dm6]	C	T	2.750e^-4	0.552	INTRON Pde9
3R	15195420	3R_15195420_SNP [dm3] 3R_19369698_SNP [dm6]	C	G	2.754e^-4	0.552	INTRON Ino80
2L	12316992	2L_12316992_SNP [dm3] 2L_12316992_SNP [dm6]	G	A	2.758e^-4	0.552	UPSTREAM CR45282 EXON CR45283
2L	8716872	2L_8716872_SNP [dm3] 2L_8716872_SNP [dm6]	T	C	2.763e^-4	0.552	INTRON raw	TF binding site mE1_TFBS_inv
X	18146569	X_18146569_SNP [dm3] X_18252536_SNP [dm6]	C	A	2.764e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17496682	X_17496682_SNP [dm3] X_17602649_SNP [dm6]	G	T	2.770e^-4	0.552	SYNONYMOUS_CODING X11L
2L	4564788	2L_4564788_SNP [dm3] 2L_4564788_SNP [dm6]	G	A	2.772e^-4	0.552	INTRON dp	TF binding site mE1_TFBS_cad
2L	20512663	2L_20512663_SNP [dm3] 2L_20512663_SNP [dm6]	C	T	2.776e^-4	0.552	INTERGENIC
2L	13230834	2L_13230834_SNP [dm3] 2L_13230834_SNP [dm6]	C	T	2.778e^-4	0.552	DOWNSTREAM CG16815 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	2046684	3L_2046684_SNP [dm3] 3L_2046684_SNP [dm6]	A	T	2.780e^-4	0.552	INTRON sls
3R	14591678	3R_14591678_SNP [dm3] 3R_18765956_SNP [dm6]	G	C	2.781e^-4	0.552	INTRON CG7720
X	13092885	X_13092885_SNP [dm3] X_13198852_SNP [dm6]	G	A	2.783e^-4	0.552	SYNONYMOUS_CODING sno
3L	8616154	3L_8616154_SNP [dm3] 3L_8623054_SNP [dm6]	C	A	2.789e^-4	0.552	DOWNSTREAM S-Lap2 INTRON GAPsec	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15298482	3R_15298482_SNP [dm3] 3R_19472760_SNP [dm6]	C	A	2.793e^-4	0.552	INTRON Dys	TF binding site mE1_TFBS_cad
2L	12720171	2L_12720171_SNP [dm3] 2L_12720171_SNP [dm6]	G	T	2.793e^-4	0.552	INTRON CG5792 & 1 other	TF binding site mE1_TFBS_sens
3L	8575681	3L_8575681_SNP [dm3] 3L_8582581_SNP [dm6]	G	A	2.795e^-4	0.552	UPSTREAM CG43078 INTRON CG43078
X	14219696	X_14219696_SNP [dm3] X_14325663_SNP [dm6]	A	G	2.796e^-4	0.552	INTRON dpr8
3R	26858311	3R_26858311_SNP [dm3] 3R_31032589_SNP [dm6]	G	A	2.798e^-4	0.552	INTERGENIC
3L	11606172	3L_11606172_SNP [dm3] 3L_11613072_SNP [dm6]	C	T	2.801e^-4	0.552	NON_SYNONYMOUS_CODING Muc68Ca
2L	15338050	2L_15338050_SNP [dm3] 2L_15338050_SNP [dm6]	T	A	2.803e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	2.803e^-4	0.552	INTRON Hmgcr
3R	15194698	3R_15194698_INS [dm3] 3R_19368976_INS [dm6]	A	AA	2.804e^-4	0.552	DOWNSTREAM Ino80 INTERGENIC
2R	5259454	2R_5259454_SNP [dm3] 2R_9371949_SNP [dm6]	C	A	2.805e^-4	0.552	INTRON CG13954
2L	5804297	2L_5804297_SNP [dm3] 2L_5804297_SNP [dm6]	G	C	2.805e^-4	0.552	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl transposable element FlyBase
2R	13781829	2R_13781829_SNP [dm3] 2R_17894324_SNP [dm6]	T	C	2.806e^-4	0.552	NON_SYNONYMOUS_CODING CG14492 UPSTREAM CG14491 INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	9643789	3L_9643789_SNP [dm3] 3L_9650689_SNP [dm6]	C	T	2.806e^-4	0.552	INTRON fry & 1 other
3R	26855569	3R_26855569_SNP [dm3] 3R_31029847_SNP [dm6]	C	T	2.811e^-4	0.552	INTERGENIC
3R	4444539	3R_4444539_SNP [dm3] 3R_8618817_SNP [dm6]	G	A	2.832e^-4	0.552	INTRON 5-HT2B
2R	12454759	2R_12454759_SNP [dm3] 2R_16567254_SNP [dm6]	A	C	2.843e^-4	0.552	INTRON CG4945
2L	5804398	2L_5804398_SNP [dm3] 2L_5804398_SNP [dm6]	A	C	2.847e^-4	0.552	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23771271	3R_23771271_SNP [dm3] 3R_27945549_SNP [dm6]	G	A	2.851e^-4	0.552	INTRON mfrn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12317303	3L_12317303_SNP [dm3] 3L_12324203_SNP [dm6]	A	T	2.855e^-4	0.552	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6068213	3L_6068213_SNP [dm3] 3L_6075113_SNP [dm6]	G	C	2.858e^-4	0.552	NON_SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18026957	2R_18026957_SNP [dm3] 2R_22139452_SNP [dm6]	T	C	2.858e^-4	0.552	UPSTREAM gom DOWNSTREAM CG11269 INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4051512	X_4051512_SNP [dm3] X_4157479_SNP [dm6]	T	G	2.860e^-4	0.552	INTRON Fas2
3L	17678706	3L_17678706_SNP [dm3] 3L_17685606_SNP [dm6]	A	G	2.860e^-4	0.552	INTERGENIC
3R	15633801	3R_15633801_SNP [dm3] 3R_19808079_SNP [dm6]	T	C	2.862e^-4	0.552	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22943063	3L_22943063_SNP [dm3] 3L_22949963_SNP [dm6]	C	A	2.863e^-4	0.552	INTRON Mes2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12207777	2L_12207777_SNP [dm3] 2L_12207777_SNP [dm6]	C	T	2.865e^-4	0.552	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
3L	7272889	3L_7272889_SNP [dm3] 3L_7279789_SNP [dm6]	T	C	2.866e^-4	0.552	INTRON unc-13-4A
2R	15814647	2R_15814647_SNP [dm3] 2R_19927142_SNP [dm6]	A	C	2.868e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	12799486	2R_12799486_SNP [dm3] 2R_16911981_SNP [dm6]	T	A	2.872e^-4	0.552	INTERGENIC
2L	14125861	2L_14125861_SNP [dm3] 2L_14125861_SNP [dm6]	T	C	2.879e^-4	0.552	INTERGENIC
3L	2662105	3L_2662105_DEL [dm3] 3L_2662105_DEL [dm6]	CCAAGTC	C	2.887e^-4	0.552	DOWNSTREAM CG33233 INTRON Fife & 1 other
3L	9897574	3L_9897574_SNP [dm3] 3L_9904474_SNP [dm6]	A	G	2.889e^-4	0.552	INTERGENIC
3L	7272884	3L_7272884_SNP [dm3] 3L_7279784_SNP [dm6]	G	A	2.895e^-4	0.552	INTRON unc-13-4A
3L	7272885	3L_7272885_INS [dm3] 3L_7279785_INS [dm6]	A	ACTAACTTAAAATCT...	2.895e^-4	0.552	INTRON unc-13-4A
3L	4457665	3L_4457665_SNP [dm3] 3L_4457665_SNP [dm6]	C	G	2.895e^-4	0.552	SYNONYMOUS_CODING CG11345
X	3214484	X_3214484_SNP [dm3] X_3320451_SNP [dm6]	C	G	2.907e^-4	0.552	INTRON dnc & 1 other
2L	9416100	2L_9416100_SNP [dm3] 2L_9416100_SNP [dm6]	C	A	2.908e^-4	0.552	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12147885	2L_12147885_SNP [dm3] 2L_12147885_SNP [dm6]	C	T	2.912e^-4	0.552	INTRON CG31760
X	19138130	X_19138130_SNP [dm3] X_19244097_SNP [dm6]	C	T	2.913e^-4	0.552	NON_SYNONYMOUS_CODING CG7889	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7243696	3L_7243696_SNP [dm3] 3L_7250596_SNP [dm6]	G	A	2.914e^-4	0.552	UPSTREAM CR43470 & 1 other DOWNSTREAM CG14830 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	21943641	2L_21943641_SNP [dm3] 2L_21943641_SNP [dm6]	T	G	2.916e^-4	0.552	INTERGENIC
3R	14591888	3R_14591888_SNP [dm3] 3R_18766166_SNP [dm6]	C	T	2.923e^-4	0.552	INTRON CG7720
2L	12317212	2L_12317212_SNP [dm3] 2L_12317212_SNP [dm6]	G	C	2.924e^-4	0.552	UPSTREAM CR45283 EXON CR45283
2L	1657259	2L_1657259_INS [dm3] 2L_1657259_INS [dm6]	T	TT	2.927e^-4	0.552	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12678776	3R_12678776_SNP [dm3] 3R_16853054_SNP [dm6]	G	A	2.928e^-4	0.552	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	12567038	3R_12567038_SNP [dm3] 3R_16741316_SNP [dm6]	G	A	2.933e^-4	0.552	DOWNSTREAM bxd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	12287154	X_12287154_SNP [dm3] X_12393121_SNP [dm6]	G	A	2.937e^-4	0.552	INTERGENIC
3L	9593448	3L_9593448_SNP [dm3] 3L_9600348_SNP [dm6]	C	T	2.939e^-4	0.552	DOWNSTREAM CG3088 & 1 other INTERGENIC
X	19112790	X_19112790_SNP [dm3] X_19218757_SNP [dm6]	G	C	2.940e^-4	0.552	INTERGENIC
X	20235473	X_20235473_INS [dm3] X_20364446_INS [dm6]	C	CTTTCCTTT	2.941e^-4	0.552	INTERGENIC
2L	14114184	2L_14114184_SNP [dm3] 2L_14114184_SNP [dm6]	A	C	2.942e^-4	0.552	INTERGENIC
2L	17895741	2L_17895741_SNP [dm3] 2L_17895741_SNP [dm6]	C	T	2.944e^-4	0.552	INTERGENIC
X	8260439	X_8260439_SNP [dm3] X_8366406_SNP [dm6]	C	T	2.947e^-4	0.552	INTRON nAChRalpha3
3L	700179	3L_700179_SNP [dm3] 3L_700179_SNP [dm6]	C	T	2.950e^-4	0.552	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	23247193	3R_23247193_SNP [dm3] 3R_27421471_SNP [dm6]	A	G	2.953e^-4	0.552	INTRON side
2L	15348643	2L_15348643_SNP [dm3] 2L_15348643_SNP [dm6]	G	T	2.954e^-4	0.552	INTERGENIC
3L	18472271	3L_18472271_DEL [dm3] 3L_18479171_DEL [dm6]	TT	T	2.954e^-4	0.552	EXON CR44673
2L	17860396	2L_17860396_SNP [dm3] 2L_17860396_SNP [dm6]	T	C	2.956e^-4	0.552	INTRON CadN2
2L	8880123	2L_8880123_DEL [dm3] 2L_8880123_DEL [dm6]	TTCTGACTTTTAATA...	T	2.958e^-4	0.552	INTERGENIC
2L	9823271	2L_9823271_SNP [dm3] 2L_9823271_SNP [dm6]	T	C	2.960e^-4	0.552	INTRON nAChRalpha6
2L	10014483	2L_10014483_SNP [dm3] 2L_10014483_SNP [dm6]	A	G	2.967e^-4	0.552	NON_SYNONYMOUS_CODING CG13131

Missing results

By genomic position
Variant impact
Gene name

SegregVariants_X phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results