DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.155e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.08217

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1796 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5208441	X_5208441_SNP [dm3] X_5314408_SNP [dm6]	G	C	4.885e^-7	0.689	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	7.345e^-7	0.689	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	2.254e^-6	0.954	INTERGENIC
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	2.830e^-6	0.954	UTR_3_PRIME sfl
X	5208428	X_5208428_SNP [dm3] X_5314395_SNP [dm6]	T	C	3.078e^-6	0.954	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10764650	3R_10764650_SNP [dm3] 3R_14938928_SNP [dm6]	A	G	5.471e^-6	0.954	INTERGENIC
3L	4630672	3L_4630672_SNP [dm3] 3L_4630672_SNP [dm6]	C	G	5.527e^-6	0.954	INTRON axo
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	5.752e^-6	0.954	INTRON Oamb
3L	16553341	3L_16553341_SNP [dm3] 3L_16560241_SNP [dm6]	G	T	7.549e^-6	0.954	INTERGENIC
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	7.638e^-6	0.954	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	1325184	3L_1325184_SNP [dm3] 3L_1325184_SNP [dm6]	G	A	7.788e^-6	0.954	UTR_5_PRIME Myo61F UPSTREAM CR45166 INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	8.297e^-6	0.954	UPSTREAM CG43244 INTERGENIC
3L	12431406	3L_12431406_SNP [dm3] 3L_12438306_SNP [dm6]	C	A	8.464e^-6	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12260774	2R_12260774_SNP [dm3] 2R_16373269_SNP [dm6]	G	T	1.026e^-5	0.954	INTERGENIC
2R	19585638	2R_19585638_SNP [dm3] 2R_23698115_SNP [dm6]	C	A	1.066e^-5	0.954	UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12411612	3L_12411612_SNP [dm3] 3L_12418512_SNP [dm6]	A	T	1.133e^-5	0.954	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	1.144e^-5	0.954	UPSTREAM CG43244 INTERGENIC
3R	18792563	3R_18792563_SNP [dm3] 3R_22966841_SNP [dm6]	C	T	1.164e^-5	0.954	SYNONYMOUS_CODING Tpl94D	TF binding site mE1_TFBS_cad
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	1.174e^-5	0.954	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3R	18797737	3R_18797737_SNP [dm3] 3R_22972015_SNP [dm6]	G	T	1.271e^-5	0.954	INTERGENIC
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	1.333e^-5	0.954	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
X	6880579	X_6880579_SNP [dm3] X_6986546_SNP [dm6]	G	T	1.351e^-5	0.954	UTR_5_PRIME bou UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	12392251	3L_12392251_SNP [dm3] 3L_12399151_SNP [dm6]	A	G	1.382e^-5	0.954	SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16731035	3L_16731035_SNP [dm3] 3L_16737935_SNP [dm6]	G	A	1.398e^-5	0.954	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12411617	3L_12411617_SNP [dm3] 3L_12418517_SNP [dm6]	A	G	1.536e^-5	0.954	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	25328692	3R_25328692_SNP [dm3] 3R_29502970_SNP [dm6]	T	C	1.538e^-5	0.954	SYNONYMOUS_CODING Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	19905970	2R_19905970_SNP [dm3] 2R_24018447_SNP [dm6]	A	G	1.593e^-5	0.954	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1368309	3L_1368309_SNP [dm3] 3L_1368309_SNP [dm6]	G	A	1.754e^-5	0.954	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	1.777e^-5	0.954	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	1.790e^-5	0.954	UPSTREAM CG5510 INTERGENIC
2L	20412981	2L_20412981_SNP [dm3] 2L_20412981_SNP [dm6]	C	G	1.799e^-5	0.954	INTRON CG10947
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	2.093e^-5	0.954	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	19482135	2R_19482135_SNP [dm3] 2R_23594612_SNP [dm6]	G	C	2.225e^-5	0.954	INTRON apt	TF binding site mE1_TFBS_sens
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	2.272e^-5	0.954	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3R	18797809	3R_18797809_SNP [dm3] 3R_22972087_SNP [dm6]	C	T	2.292e^-5	0.954	INTERGENIC
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	2.445e^-5	0.954	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8586240	2R_8586240_SNP [dm3] 2R_12698735_SNP [dm6]	T	C	2.448e^-5	0.954	INTERGENIC
2R	19905679	2R_19905679_SNP [dm3] 2R_24018156_SNP [dm6]	C	A	2.478e^-5	0.954	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	2.565e^-5	0.954	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	2.656e^-5	0.954	UPSTREAM CG43244 INTERGENIC
3R	19870845	3R_19870845_SNP [dm3] 3R_24045123_SNP [dm6]	A	G	2.780e^-5	0.954	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11192592	2R_11192592_DEL [dm3] 2R_15305087_DEL [dm6]	CT	C	3.250e^-5	0.954	INTRON Trpm
3L	16991961	3L_16991961_SNP [dm3] 3L_16998861_SNP [dm6]	A	G	3.267e^-5	0.954	SYNONYMOUS_CODING CG3764 UPSTREAM mir-2500	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20064873	2L_20064873_SNP [dm3] 2L_20064873_SNP [dm6]	G	C	3.298e^-5	0.954	SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8944700	3L_8944700_SNP [dm3] 3L_8951600_SNP [dm6]	A	C	3.307e^-5	0.954	INTRON orb2 & 1 other
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	3.341e^-5	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	3.350e^-5	0.954	DOWNSTREAM CR44315 INTERGENIC
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	3.423e^-5	0.954	INTERGENIC
3L	16731038	3L_16731038_SNP [dm3] 3L_16737938_SNP [dm6]	T	C	3.557e^-5	0.954	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	3.585e^-5	0.954	INTRON Ccn
2L	7133482	2L_7133482_SNP [dm3] 2L_7133482_SNP [dm6]	A	C	3.607e^-5	0.954	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20017195	3R_20017195_SNP [dm3] 3R_24191473_SNP [dm6]	T	C	3.771e^-5	0.954	NON_SYNONYMOUS_CODING jnj
3L	10230695	3L_10230695_SNP [dm3] 3L_10237595_SNP [dm6]	G	A	3.857e^-5	0.954	DOWNSTREAM CR44542 INTERGENIC
3L	9751229	3L_9751229_SNP [dm3] 3L_9758129_SNP [dm6]	T	G	4.051e^-5	0.954	INTRON CG42268
2L	7363705	2L_7363705_SNP [dm3] 2L_7363705_SNP [dm6]	G	A	4.207e^-5	0.954	UTR_5_PRIME Wnt10
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	4.403e^-5	0.954	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12079989	X_12079989_SNP [dm3] X_12185956_SNP [dm6]	C	G	4.460e^-5	0.954	INTRON Ten-a
2L	20474163	2L_20474163_SNP [dm3] 2L_20474163_SNP [dm6]	C	T	4.575e^-5	0.954	UPSTREAM CG43233 INTRON CR44980
3L	13725500	3L_13725500_DEL [dm3] 3L_13732400_DEL [dm6]	ACTGACAGA	A	4.646e^-5	0.954	INTRON bru-3
3L	897188	3L_897188_SNP [dm3] 3L_897188_SNP [dm6]	T	C	4.757e^-5	0.954	SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	4.758e^-5	0.954	INTRON sfl
3R	15670105	3R_15670105_SNP [dm3] 3R_19844383_SNP [dm6]	C	A	4.871e^-5	0.954	INTERGENIC
X	16606189	X_16606189_SNP [dm3] X_16712156_SNP [dm6]	T	C	4.949e^-5	0.954	NON_SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3546984	X_3546984_INS [dm3] X_3652951_INS [dm6]	T	TC	4.987e^-5	0.954	INTRON AstA-R1
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	5.004e^-5	0.954	INTRON stumps	regulatory region REDfly_CRMs
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	5.036e^-5	0.954	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2L	7133460	2L_7133460_SNP [dm3] 2L_7133460_SNP [dm6]	C	T	5.092e^-5	0.954	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7199551	3L_7199551_SNP [dm3] 3L_7206451_SNP [dm6]	C	T	5.213e^-5	0.954	INTERGENIC
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	5.336e^-5	0.954	INTERGENIC
2L	20474175	2L_20474175_SNP [dm3] 2L_20474175_SNP [dm6]	C	T	5.487e^-5	0.954	UPSTREAM CG43233 INTRON CR44980
2R	10265199	2R_10265199_SNP [dm3] 2R_14377694_SNP [dm6]	A	C	5.522e^-5	0.954	UPSTREAM Dh44-R1 INTERGENIC
3R	18390972	3R_18390972_SNP [dm3] 3R_22565250_SNP [dm6]	G	A	5.638e^-5	0.954	INTERGENIC
3L	16204363	3L_16204363_SNP [dm3] 3L_16211263_SNP [dm6]	G	T	5.728e^-5	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7043067	2R_7043067_SNP [dm3] 2R_11155562_SNP [dm6]	A	G	5.783e^-5	0.954	DOWNSTREAM CG13230 INTRON CG13229
3R	26940100	3R_26940100_SNP [dm3] 3R_31114378_SNP [dm6]	T	C	5.862e^-5	0.954	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	5.872e^-5	0.954	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	16944520	2L_16944520_SNP [dm3] 2L_16944520_SNP [dm6]	G	A	5.948e^-5	0.954	DOWNSTREAM CR43053 INTERGENIC
3R	16528999	3R_16528999_SNP [dm3] 3R_20703277_SNP [dm6]	T	C	6.024e^-5	0.954	INTRON Oamb
3R	17116277	3R_17116277_SNP [dm3] 3R_21290555_SNP [dm6]	T	C	6.101e^-5	0.954	INTRON SIFaR
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	6.318e^-5	0.954	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18719096	X_18719096_SNP [dm3] X_18825063_SNP [dm6]	G	A	6.327e^-5	0.954	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1263078	3L_1263078_SNP [dm3] 3L_1263078_SNP [dm6]	G	C	6.692e^-5	0.954	INTRON CG9134
3L	16302829	3L_16302829_SNP [dm3] 3L_16309729_SNP [dm6]	A	G	6.844e^-5	0.954	INTRON CR32160
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	6.911e^-5	0.954	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1376855	3L_1376855_SNP [dm3] 3L_1376855_SNP [dm6]	T	C	6.924e^-5	0.954	INTRON Ptp61F & 1 other
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	7.008e^-5	0.954	DOWNSTREAM CG6974 & 1 other INTERGENIC
2L	7490336	2L_7490336_SNP [dm3] 2L_7490336_SNP [dm6]	C	T	7.048e^-5	0.954	INTRON Ziz
3R	16528700	3R_16528700_SNP [dm3] 3R_20702978_SNP [dm6]	T	A	7.089e^-5	0.954	INTRON Oamb
3L	18645429	3L_18645429_SNP [dm3] 3L_18652329_SNP [dm6]	A	C	7.144e^-5	0.954	INTRON MYPT-75D
2L	21061321	2L_21061321_SNP [dm3] 2L_21061321_SNP [dm6]	T	G	7.231e^-5	0.954	INTRON CG9265
X	20554931	X_20554931_DEL [dm3] X_20683904_DEL [dm6]	CTTAGA	T	7.240e^-5	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	14165837	2R_14165837_DEL [dm3] 2R_18278332_DEL [dm6]	CGCCC	C	7.316e^-5	0.954	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	7.401e^-5	0.954	INTRON CG5455
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	7.455e^-5	0.954	INTRON jnj
2R	19787719	2R_19787719_SNP [dm3] 2R_23900196_SNP [dm6]	T	C	7.458e^-5	0.954	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo
3R	13558077	3R_13558077_SNP [dm3] 3R_17732355_SNP [dm6]	T	C	7.466e^-5	0.954	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10230591	3L_10230591_SNP [dm3] 3L_10237491_SNP [dm6]	G	A	7.475e^-5	0.954	DOWNSTREAM CR44542 INTERGENIC
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	7.601e^-5	0.954	INTRON Pdp1
X	11560584	X_11560584_SNP [dm3] X_11666551_SNP [dm6]	T	A	7.800e^-5	0.954	INTRON Ptp10D
3L	6291711	3L_6291711_SNP [dm3] 3L_6298611_SNP [dm6]	T	C	7.874e^-5	0.954	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16528675	3R_16528675_SNP [dm3] 3R_20702953_SNP [dm6]	G	A	7.884e^-5	0.954	INTRON Oamb
3R	16528681	3R_16528681_SNP [dm3] 3R_20702959_SNP [dm6]	C	T	7.884e^-5	0.954	INTRON Oamb
3R	10420212	3R_10420212_SNP [dm3] 3R_14594490_SNP [dm6]	A	T	8.008e^-5	0.954	INTRON stumps	regulatory region REDfly_CRMs
3R	11165246	3R_11165246_SNP [dm3] 3R_15339524_SNP [dm6]	T	C	8.042e^-5	0.954	NON_SYNONYMOUS_CODING CG6218
2L	9263570	2L_9263570_DEL [dm3] 2L_9263570_DEL [dm6]	CC	C	8.225e^-5	0.954	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7133468	2L_7133468_SNP [dm3] 2L_7133468_SNP [dm6]	T	A	8.239e^-5	0.954	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18717955	X_18717955_INS [dm3] X_18823922_INS [dm6]	T	TAAAATATT	8.355e^-5	0.954	INTRON CG42450
3L	16731029	3L_16731029_SNP [dm3] 3L_16737929_SNP [dm6]	T	C	8.519e^-5	0.954	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16528741	3R_16528741_SNP [dm3] 3R_20703019_SNP [dm6]	C	T	8.739e^-5	0.954	INTRON Oamb
2L	17049631	2L_17049631_SNP [dm3] 2L_17049631_SNP [dm6]	G	A	8.787e^-5	0.954	INTERGENIC
3L	2430863	3L_2430863_SNP [dm3] 3L_2430863_SNP [dm6]	A	G	8.788e^-5	0.954	INTRON CG45186
3L	2749204	3L_2749204_SNP [dm3] 3L_2749204_SNP [dm6]	A	G	8.834e^-5	0.954	INTRON Mrtf
3L	1334406	3L_1334406_SNP [dm3] 3L_1334406_SNP [dm6]	C	G	8.899e^-5	0.954	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	908567	X_908567_SNP [dm3] X_1014534_SNP [dm6]	C	G	8.958e^-5	0.954	UTR_3_PRIME CG11638 INTRON su_w[a]_
X	18717963	X_18717963_DEL [dm3] X_18823930_DEL [dm6]	TT	T	9.100e^-5	0.954	INTRON CG42450
X	20554724	X_20554724_SNP [dm3] X_20683697_SNP [dm6]	G	A	9.209e^-5	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	18645916	3L_18645916_SNP [dm3] 3L_18652816_SNP [dm6]	T	A	9.211e^-5	0.954	INTRON MYPT-75D
3L	6068265	3L_6068265_SNP [dm3] 3L_6075165_SNP [dm6]	G	A	9.268e^-5	0.954	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	15666530	X_15666530_SNP [dm3] X_15772497_SNP [dm6]	C	T	9.280e^-5	0.954	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	9.370e^-5	0.954	INTERGENIC	silencer mE1_HDAC_PRE
3R	26870389	3R_26870389_SNP [dm3] 3R_31044667_SNP [dm6]	T	A	9.462e^-5	0.954	SYNONYMOUS_CODING CG33920 INTRON CanA1
3L	10996371	3L_10996371_SNP [dm3] 3L_11003271_SNP [dm6]	C	G	9.542e^-5	0.954	INTRON klu
2L	16709913	2L_16709913_SNP [dm3] 2L_16709913_SNP [dm6]	T	C	9.575e^-5	0.954	INTRON CG31808
3R	16505584	3R_16505584_SNP [dm3] 3R_20679862_SNP [dm6]	C	T	9.715e^-5	0.954	DOWNSTREAM CR43452 INTERGENIC
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	9.771e^-5	0.954	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
2R	19482133	2R_19482133_SNP [dm3] 2R_23594610_SNP [dm6]	A	G	9.777e^-5	0.954	INTRON apt	TF binding site mE1_TFBS_sens
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	9.844e^-5	0.954	INTRON jnj
X	16606212	X_16606212_SNP [dm3] X_16712179_SNP [dm6]	C	T	9.853e^-5	0.954	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16519233	3R_16519233_SNP [dm3] 3R_20693511_SNP [dm6]	A	G	9.932e^-5	0.954	SYNONYMOUS_CODING Oamb INTRON Oamb	TF binding site mE1_TFBS_cad
2L	10451227	2L_10451227_SNP [dm3] 2L_10451227_SNP [dm6]	C	A	9.958e^-5	0.954	NON_SYNONYMOUS_CODING ppk10
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	9.967e^-5	0.954	SYNONYMOUS_CODING CG7716
2L	4326011	2L_4326011_SNP [dm3] 2L_4326011_SNP [dm6]	A	G	1.003e^-4	0.954	INTRON CG16857
3R	17110690	3R_17110690_SNP [dm3] 3R_21284968_SNP [dm6]	A	G	1.007e^-4	0.954	DOWNSTREAM CG17298 INTRON SIFaR
3R	18390916	3R_18390916_SNP [dm3] 3R_22565194_SNP [dm6]	A	T	1.012e^-4	0.954	INTERGENIC
2R	3633470	2R_3633470_SNP [dm3] 2R_7745965_SNP [dm6]	G	A	1.013e^-4	0.954	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	8615750	3L_8615750_SNP [dm3] 3L_8622650_SNP [dm6]	T	C	1.022e^-4	0.954	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_sens
2R	9459482	2R_9459482_SNP [dm3] 2R_13571977_SNP [dm6]	A	G	1.026e^-4	0.954	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14490438	2R_14490438_SNP [dm3] 2R_18602933_SNP [dm6]	T	C	1.042e^-4	0.954	INTRON GEFmeso
2R	6799802	2R_6799802_SNP [dm3] 2R_10912297_SNP [dm6]	T	C	1.047e^-4	0.954	INTERGENIC
2R	7554314	2R_7554314_SNP [dm3] 2R_11666809_SNP [dm6]	C	T	1.050e^-4	0.954	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	1.056e^-4	0.954	INTERGENIC
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	1.065e^-4	0.954	INTRON Pdp1
X	8360890	X_8360890_SNP [dm3] X_8466857_SNP [dm6]	T	G	1.068e^-4	0.954	UPSTREAM CG33223 DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
3R	20016930	3R_20016930_SNP [dm3] 3R_24191208_SNP [dm6]	T	A	1.077e^-4	0.954	SYNONYMOUS_CODING jnj
2R	8339434	2R_8339434_SNP [dm3] 2R_12451929_SNP [dm6]	G	T	1.086e^-4	0.954	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12966453	2R_12966453_SNP [dm3] 2R_17078948_SNP [dm6]	A	C	1.109e^-4	0.954	INTRON CG30460
3R	846066	3R_846066_SNP [dm3] 3R_5020344_SNP [dm6]	C	G	1.119e^-4	0.954	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
2L	3283559	2L_3283559_SNP [dm3] 2L_3283559_SNP [dm6]	G	A	1.135e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14729839	3L_14729839_SNP [dm3] 3L_14736739_SNP [dm6]	G	C	1.137e^-4	0.954	INTRON ome
2L	8142567	2L_8142567_SNP [dm3] 2L_8142567_SNP [dm6]	T	G	1.146e^-4	0.954	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	1.148e^-4	0.954	INTRON dp
3L	13724770	3L_13724770_SNP [dm3] 3L_13731670_SNP [dm6]	A	C	1.154e^-4	0.954	INTRON bru-3
2R	18233644	2R_18233644_SNP [dm3] 2R_22346139_SNP [dm6]	C	T	1.161e^-4	0.954	NON_SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
2R	16814957	2R_16814957_SNP [dm3] 2R_20927452_SNP [dm6]	A	G	1.163e^-4	0.954	INTRON Rx
3R	10420226	3R_10420226_SNP [dm3] 3R_14594504_SNP [dm6]	T	C	1.170e^-4	0.954	INTRON stumps	regulatory region REDfly_CRMs
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	1.177e^-4	0.954	INTERGENIC
3L	2495965	3L_2495965_SNP [dm3] 3L_2495965_SNP [dm6]	G	T	1.184e^-4	0.954	SPLICE_SITE_REGION CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20435834	2R_20435834_SNP [dm3] 2R_24548311_SNP [dm6]	C	A	1.185e^-4	0.954	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12635676	2L_12635676_SNP [dm3] 2L_12635676_SNP [dm6]	G	A	1.185e^-4	0.954	INTRON Ref2
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	1.186e^-4	0.954	INTRON CG7510
3L	16731023	3L_16731023_SNP [dm3] 3L_16737923_SNP [dm6]	C	T	1.190e^-4	0.954	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16731026	3L_16731026_SNP [dm3] 3L_16737926_SNP [dm6]	C	A	1.190e^-4	0.954	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5006060	2L_5006060_SNP [dm3] 2L_5006060_SNP [dm6]	T	A	1.195e^-4	0.954	INTRON Rtnl1
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	1.195e^-4	0.954	INTERGENIC
3R	21961529	3R_21961529_SNP [dm3] 3R_26135807_SNP [dm6]	T	C	1.207e^-4	0.954	SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	1.219e^-4	0.954	UPSTREAM CR44542 INTERGENIC
3L	6068237	3L_6068237_SNP [dm3] 3L_6075137_SNP [dm6]	A	G	1.226e^-4	0.954	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14147972	2R_14147972_DEL [dm3] 2R_18260467_DEL [dm6]	GA	G	1.226e^-4	0.954	INTERGENIC
2L	7133456	2L_7133456_SNP [dm3] 2L_7133456_SNP [dm6]	G	T	1.227e^-4	0.954	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	11920727	2R_11920727_INS [dm3] 2R_16033222_INS [dm6]	A	AGA	1.237e^-4	0.954	INTRON SP2353
X	17244514	X_17244514_SNP [dm3] X_17350481_SNP [dm6]	G	A	1.237e^-4	0.954	INTERGENIC
2L	16987311	2L_16987311_SNP [dm3] 2L_16987311_SNP [dm6]	A	C	1.238e^-4	0.954	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
X	15666533	X_15666533_SNP [dm3] X_15772500_SNP [dm6]	G	A	1.241e^-4	0.954	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	1.250e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	1.255e^-4	0.954	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	13745473	2L_13745473_SNP [dm3] 2L_13745473_SNP [dm6]	C	G	1.271e^-4	0.954	INTERGENIC
3L	3845577	3L_3845577_SNP [dm3] 3L_3845577_SNP [dm6]	G	A	1.273e^-4	0.954	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	4531756	2L_4531756_SNP [dm3] 2L_4531756_SNP [dm6]	G	A	1.284e^-4	0.954	SYNONYMOUS_CODING dp INTRON dp
3R	10420221	3R_10420221_SNP [dm3] 3R_14594499_SNP [dm6]	A	G	1.288e^-4	0.954	INTRON stumps	regulatory region REDfly_CRMs
3R	10420235	3R_10420235_SNP [dm3] 3R_14594513_SNP [dm6]	A	C	1.289e^-4	0.954	INTRON stumps	regulatory region REDfly_CRMs
2R	14147985	2R_14147985_SNP [dm3] 2R_18260480_SNP [dm6]	C	T	1.289e^-4	0.954	INTERGENIC
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	1.309e^-4	0.954	INTRON sfl
3R	13128595	3R_13128595_SNP [dm3] 3R_17302873_SNP [dm6]	T	A	1.313e^-4	0.954	INTERGENIC
2L	22021358	2L_22021358_SNP [dm3] 2L_22021358_SNP [dm6]	C	T	1.316e^-4	0.954	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14675277	3R_14675277_SNP [dm3] 3R_18849555_SNP [dm6]	T	C	1.318e^-4	0.954	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8979964	3L_8979964_SNP [dm3] 3L_8986864_SNP [dm6]	A	G	1.337e^-4	0.954	UTR_5_PRIME CG5068 UPSTREAM Galk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	7244367	2R_7244367_SNP [dm3] 2R_11356862_SNP [dm6]	C	A	1.338e^-4	0.954	SYNONYMOUS_CODING iotaTry UPSTREAM CG13202 DOWNSTREAM deltaTry & 1 other	TF binding site mE1_TFBS_sens
2L	2488138	2L_2488138_SNP [dm3] 2L_2488138_SNP [dm6]	T	A	1.347e^-4	0.954	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	17652530	2R_17652530_SNP [dm3] 2R_21765025_SNP [dm6]	C	T	1.353e^-4	0.954	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
X	10013348	X_10013348_SNP [dm3] X_10119315_SNP [dm6]	A	T	1.375e^-4	0.954	INTRON RhoU & 1 other
3R	9610515	3R_9610515_SNP [dm3] 3R_13784793_SNP [dm6]	C	T	1.376e^-4	0.954	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22018130	3R_22018130_DEL [dm3] 3R_26192408_DEL [dm6]	CAGCTACAACA...	TTTT	1.377e^-4	0.954	INTERGENIC
3L	15899108	3L_15899108_SNP [dm3] 3L_15906008_SNP [dm6]	T	C	1.378e^-4	0.954	SYNONYMOUS_CODING sff
3R	14307711	3R_14307711_SNP [dm3] 3R_18481989_SNP [dm6]	G	A	1.379e^-4	0.954	INTRON fru
3L	22964441	3L_22964441_SNP [dm3] 3L_22971341_SNP [dm6]	G	A	1.384e^-4	0.954	INTERGENIC
2R	10265216	2R_10265216_SNP [dm3] 2R_14377711_SNP [dm6]	T	C	1.385e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2L	20146604	2L_20146604_SNP [dm3] 2L_20146604_SNP [dm6]	G	A	1.386e^-4	0.954	INTERGENIC
3R	2734884	3R_2734884_SNP [dm3] 3R_6909162_SNP [dm6]	T	C	1.391e^-4	0.954	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12260864	2R_12260864_SNP [dm3] 2R_16373359_SNP [dm6]	C	A	1.400e^-4	0.954	INTERGENIC
2R	12260866	2R_12260866_SNP [dm3] 2R_16373361_SNP [dm6]	A	T	1.400e^-4	0.954	INTERGENIC
X	16826262	X_16826262_SNP [dm3] X_16932229_SNP [dm6]	G	A	1.404e^-4	0.954	INTRON CG4928
2R	7887972	2R_7887972_SNP [dm3] 2R_12000467_SNP [dm6]	A	C	1.412e^-4	0.954	INTERGENIC
X	18717908	X_18717908_DEL [dm3] X_18823875_DEL [dm6]	GGCAACTAAAGATATTTGAT...	G	1.413e^-4	0.954	INTRON CG42450
2L	9173115	2L_9173115_DEL [dm3] 2L_9173115_DEL [dm6]	AA	A	1.414e^-4	0.954	INTRON tai
2L	11644789	2L_11644789_SNP [dm3] 2L_11644789_SNP [dm6]	A	G	1.420e^-4	0.954	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
2R	12260777	2R_12260777_SNP [dm3] 2R_16373272_SNP [dm6]	A	T	1.429e^-4	0.954	INTERGENIC
2L	22021375	2L_22021375_SNP [dm3] 2L_22021375_SNP [dm6]	A	G	1.430e^-4	0.954	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13571163	3R_13571163_SNP [dm3] 3R_17745441_SNP [dm6]	A	G	1.431e^-4	0.954	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6698598	2L_6698598_SNP [dm3] 2L_6698598_SNP [dm6]	A	G	1.435e^-4	0.954	INTRON Tsp
X	16097029	X_16097029_SNP [dm3] X_16202996_SNP [dm6]	C	G	1.442e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	10049241	2L_10049241_SNP [dm3] 2L_10049241_SNP [dm6]	C	T	1.460e^-4	0.954	UPSTREAM CG33301 INTERGENIC
2L	4911815	2L_4911815_SNP [dm3] 2L_4911815_SNP [dm6]	G	A	1.464e^-4	0.954	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1	TF binding site mE1_TFBS_chinmo
X	7322037	X_7322037_SNP [dm3] X_7428004_SNP [dm6]	C	A	1.475e^-4	0.954	INTERGENIC
3L	1199434	3L_1199434_SNP [dm3] 3L_1199434_SNP [dm6]	C	T	1.479e^-4	0.954	DOWNSTREAM Aplip1 INTERGENIC
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	1.487e^-4	0.954	INTRON Cht7
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	1.487e^-4	0.954	INTRON Pdp1
3L	18645967	3L_18645967_SNP [dm3] 3L_18652867_SNP [dm6]	A	C	1.490e^-4	0.954	INTRON MYPT-75D
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	1.499e^-4	0.954	INTERGENIC
2L	16017617	2L_16017617_SNP [dm3] 2L_16017617_SNP [dm6]	G	A	1.522e^-4	0.954	INTRON beat-Ic
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	1.523e^-4	0.954	UTR_5_PRIME Wnt10
X	9082358	X_9082358_DEL [dm3] X_9188325_DEL [dm6]	AA	A	1.543e^-4	0.954	UTR_3_PRIME mei-P26 DOWNSTREAM CG12115
3L	2430869	3L_2430869_SNP [dm3] 3L_2430869_SNP [dm6]	T	A	1.544e^-4	0.954	INTRON CG45186
3L	2510391	3L_2510391_SNP [dm3] 3L_2510391_SNP [dm6]	G	T	1.545e^-4	0.954	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo
2R	12874793	2R_12874793_SNP [dm3] 2R_16987288_SNP [dm6]	G	A	1.545e^-4	0.954	INTRON Cbp53E
2L	12454619	2L_12454619_SNP [dm3] 2L_12454619_SNP [dm6]	C	G	1.546e^-4	0.954	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
3R	16528539	3R_16528539_SNP [dm3] 3R_20702817_SNP [dm6]	G	T	1.568e^-4	0.954	INTRON Oamb
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	1.573e^-4	0.954	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	8988904	3L_8988904_SNP [dm3] 3L_8995804_SNP [dm6]	A	G	1.576e^-4	0.954	UTR_5_PRIME smg INTRON smg
3R	18949002	3R_18949002_SNP [dm3] 3R_23123280_SNP [dm6]	A	G	1.578e^-4	0.954	SYNONYMOUS_CODING CenB1A DOWNSTREAM CG31365	TF binding site mE1_TFBS_sens
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	1.582e^-4	0.954	UPSTREAM CG43244 INTERGENIC
X	9107596	X_9107596_SNP [dm3] X_9213563_SNP [dm6]	T	G	1.583e^-4	0.954	INTERGENIC
3L	3142238	3L_3142238_SNP [dm3] 3L_3142238_SNP [dm6]	A	T	1.585e^-4	0.954	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18718629	X_18718629_SNP [dm3] X_18824596_SNP [dm6]	C	T	1.588e^-4	0.954	INTRON CG42450	TF binding site mE1_TFBS_cad
3R	18791888	3R_18791888_SNP [dm3] 3R_22966166_SNP [dm6]	C	A	1.610e^-4	0.954	UPSTREAM Tpl94D INTERGENIC
2R	2853203	2R_2853203_INS [dm3] 2R_6965698_INS [dm6]	T	ATA	1.614e^-4	0.954	INTRON mim & 1 other
2L	10431345	2L_10431345_SNP [dm3] 2L_10431345_SNP [dm6]	A	C	1.623e^-4	0.954	UTR_5_PRIME TfIIB UPSTREAM CG5343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	1.630e^-4	0.954	INTRON Pdp1
3R	19133663	3R_19133663_SNP [dm3] 3R_23307941_SNP [dm6]	A	G	1.630e^-4	0.954	INTRON pnt	TF binding site mE1_TFBS_inv
X	16886317	X_16886317_SNP [dm3] X_16992284_SNP [dm6]	A	T	1.635e^-4	0.954	INTRON CG45002
3L	16362241	3L_16362241_SNP [dm3] 3L_16369141_SNP [dm6]	C	T	1.636e^-4	0.954	UPSTREAM CG18814 INTRON CG4842
3L	18928910	3L_18928910_SNP [dm3] 3L_18935810_SNP [dm6]	C	A	1.645e^-4	0.954	INTRON CG32204
X	908559	X_908559_SNP [dm3] X_1014526_SNP [dm6]	A	G	1.649e^-4	0.954	UTR_3_PRIME CG11638 INTRON su_w[a]_
3R	18263336	3R_18263336_SNP [dm3] 3R_22437614_SNP [dm6]	C	G	1.658e^-4	0.954	INTERGENIC
X	2691018	X_2691018_SNP [dm3] X_2796985_SNP [dm6]	C	A	1.662e^-4	0.954	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	1.677e^-4	0.954	UPSTREAM hoe1 INTRON hoe1
3L	6298143	3L_6298143_SNP [dm3] 3L_6305043_SNP [dm6]	C	T	1.678e^-4	0.954	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
X	9082356	X_9082356_SNP [dm3] X_9188323_SNP [dm6]	A	G	1.683e^-4	0.954	UTR_3_PRIME mei-P26
X	3548353	X_3548353_SNP [dm3] X_3654320_SNP [dm6]	C	T	1.688e^-4	0.954	INTRON AstA-R1
2R	6893841	2R_6893841_SNP [dm3] 2R_11006336_SNP [dm6]	A	G	1.700e^-4	0.954	INTRON luna
3L	12613444	3L_12613444_SNP [dm3] 3L_12620344_SNP [dm6]	G	A	1.706e^-4	0.954	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15327425	X_15327425_SNP [dm3] X_15433392_SNP [dm6]	A	T	1.728e^-4	0.954	INTRON Cngl	transposable element FlyBase
3R	16599719	3R_16599719_SNP [dm3] 3R_20773997_SNP [dm6]	G	T	1.730e^-4	0.954	INTRON Syp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10270865	2L_10270865_SNP [dm3] 2L_10270865_SNP [dm6]	G	C	1.731e^-4	0.954	SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
2R	7286728	2R_7286728_SNP [dm3] 2R_11399223_SNP [dm6]	G	A	1.732e^-4	0.954	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5440687	3R_5440687_INS [dm3] 3R_9614965_INS [dm6]	A	AAA	1.739e^-4	0.954	INTRON CG8312
2L	2488114	2L_2488114_SNP [dm3] 2L_2488114_SNP [dm6]	T	A	1.748e^-4	0.954	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	1.751e^-4	0.954	INTRON rgr	TF binding site mE1_TFBS_cad
2L	8189377	2L_8189377_SNP [dm3] 2L_8189377_SNP [dm6]	A	G	1.753e^-4	0.954	UTR_3_PRIME Piezo DOWNSTREAM CG34134
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	1.754e^-4	0.954	INTRON CG17018	transposable element FlyBase
3R	18588006	3R_18588006_SNP [dm3] 3R_22762284_SNP [dm6]	A	C	1.761e^-4	0.954	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2R	18230934	2R_18230934_SNP [dm3] 2R_22343429_SNP [dm6]	C	T	1.763e^-4	0.954	INTRON Liprin-gamma
2R	17694333	2R_17694333_SNP [dm3] 2R_21806828_SNP [dm6]	T	C	1.770e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_kn
X	18352906	X_18352906_SNP [dm3] X_18458873_SNP [dm6]	G	A	1.773e^-4	0.954	SYNONYMOUS_CODING CG32547 DOWNSTREAM CG43843
2L	16987316	2L_16987316_SNP [dm3] 2L_16987316_SNP [dm6]	G	C	1.776e^-4	0.954	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
3L	3845044	3L_3845044_SNP [dm3] 3L_3845044_SNP [dm6]	A	G	1.776e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	434634	2R_434634_SNP [dm3] 2R_4547129_SNP [dm6]	G	T	1.780e^-4	0.954	INTRON Stlk	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	12411702	3L_12411702_SNP [dm3] 3L_12418602_SNP [dm6]	C	T	1.782e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	2749198	3L_2749198_SNP [dm3] 3L_2749198_SNP [dm6]	A	C	1.793e^-4	0.954	INTRON Mrtf
2R	14265489	2R_14265489_DEL [dm3] 2R_18377984_DEL [dm6]	CATA	C	1.801e^-4	0.954	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	516204	3L_516204_SNP [dm3] 3L_516204_SNP [dm6]	A	T	1.803e^-4	0.954	INTRON klar
3L	6537557	3L_6537557_SNP [dm3] 3L_6544457_SNP [dm6]	T	C	1.813e^-4	0.954	INTRON sfl
X	9081161	X_9081161_SNP [dm3] X_9187128_SNP [dm6]	C	A	1.813e^-4	0.954	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
3L	6542208	3L_6542208_SNP [dm3] 3L_6549108_SNP [dm6]	T	A	1.821e^-4	0.954	UTR_3_PRIME sfl
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	1.824e^-4	0.954	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2R	7835809	2R_7835809_SNP [dm3] 2R_11948304_SNP [dm6]	C	T	1.832e^-4	0.954	INTRON CG13188
2R	5859202	2R_5859202_SNP [dm3] 2R_9971697_SNP [dm6]	T	C	1.833e^-4	0.954	SYNONYMOUS_CODING CG12134 DOWNSTREAM Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3572735	3L_3572735_INS [dm3] 3L_3572735_INS [dm6]	A	CACAGTTC	1.833e^-4	0.954	INTRON Eip63E
3L	6524425	3L_6524425_SNP [dm3] 3L_6531325_SNP [dm6]	T	G	1.840e^-4	0.954	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
3L	16204400	3L_16204400_SNP [dm3] 3L_16211300_SNP [dm6]	T	C	1.843e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7011205	3R_7011205_SNP [dm3] 3R_11185483_SNP [dm6]	T	C	1.870e^-4	0.954	INTERGENIC
3R	12216024	3R_12216024_SNP [dm3] 3R_16390302_SNP [dm6]	C	G	1.874e^-4	0.954	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1273290	3L_1273290_SNP [dm3] 3L_1273290_SNP [dm6]	A	T	1.882e^-4	0.954	INTRON CG9134
3L	1090241	3L_1090241_SNP [dm3] 3L_1090241_SNP [dm6]	A	C	1.883e^-4	0.954	INTRON bab1	regulatory region REDfly_CRMs
3L	1199014	3L_1199014_SNP [dm3] 3L_1199014_SNP [dm6]	G	T	1.886e^-4	0.954	UTR_3_PRIME Aplip1
3R	1910418	3R_1910418_INS [dm3] 3R_6084696_INS [dm6]	A	ATTATATAATTTTATT...	1.898e^-4	0.954	INTERGENIC
2L	9173121	2L_9173121_SNP [dm3] 2L_9173121_SNP [dm6]	C	G	1.901e^-4	0.954	INTRON tai
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.902e^-4	0.954	NON_SYNONYMOUS_CODING dp INTRON dp
2R	14542307	2R_14542307_INS [dm3] 2R_18654802_INS [dm6]	A	AC	1.904e^-4	0.954	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18097693	3L_18097693_SNP [dm3] 3L_18104593_SNP [dm6]	A	G	1.910e^-4	0.954	INTRON CG13698
2L	7133498	2L_7133498_SNP [dm3] 2L_7133498_SNP [dm6]	C	A	1.929e^-4	0.954	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17233703	3R_17233703_SNP [dm3] 3R_21407981_SNP [dm6]	C	T	1.940e^-4	0.954	INTRON CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	26993447	3R_26993447_SNP [dm3] 3R_31167725_SNP [dm6]	C	G	1.941e^-4	0.954	INTRON Gycbeta100B & 1 other
3R	20606786	3R_20606786_SNP [dm3] 3R_24781064_SNP [dm6]	G	A	1.942e^-4	0.954	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	174200	2L_174200_SNP [dm3] 2L_174200_SNP [dm6]	G	A	1.947e^-4	0.954	INTRON spen
3R	17233735	3R_17233735_SNP [dm3] 3R_21408013_SNP [dm6]	G	A	1.953e^-4	0.954	NON_SYNONYMOUS_CODING CheB93a SPLICE_SITE_REGION CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	19014911	3L_19014911_SNP [dm3] 3L_19021811_SNP [dm6]	T	C	1.956e^-4	0.954	INTRON nkd
2L	7489623	2L_7489623_SNP [dm3] 2L_7489623_SNP [dm6]	T	A	1.956e^-4	0.954	INTRON Ziz
3L	6068358	3L_6068358_SNP [dm3] 3L_6075258_SNP [dm6]	T	A	1.960e^-4	0.954	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2L	15149788	2L_15149788_SNP [dm3] 2L_15149788_SNP [dm6]	A	T	1.964e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.965e^-4	0.954	NON_SYNONYMOUS_CODING jnj
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	1.977e^-4	0.954	INTRON Ggamma30A
3R	15540900	3R_15540900_SNP [dm3] 3R_19715178_SNP [dm6]	A	G	1.980e^-4	0.954	DOWNSTREAM CG34286 INTERGENIC
3L	8728539	3L_8728539_SNP [dm3] 3L_8735439_SNP [dm6]	C	A	1.987e^-4	0.954	INTRON Prm
X	3557225	X_3557225_INS [dm3] X_3663192_INS [dm6]	C	CGTCACTATATAC...	2.002e^-4	0.954	INTRON AstA-R1
2L	9172835	2L_9172835_SNP [dm3] 2L_9172835_SNP [dm6]	T	C	2.004e^-4	0.954	INTRON tai
3L	18645898	3L_18645898_SNP [dm3] 3L_18652798_SNP [dm6]	A	G	2.006e^-4	0.954	INTRON MYPT-75D
2L	7387527	2L_7387527_SNP [dm3] 2L_7387527_SNP [dm6]	A	C	2.009e^-4	0.954	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18751046	2L_18751046_SNP [dm3] 2L_18751046_SNP [dm6]	T	A	2.012e^-4	0.954	INTERGENIC
2L	16097502	2L_16097502_SNP [dm3] 2L_16097502_SNP [dm6]	G	A	2.026e^-4	0.954	INTERGENIC
3L	13366747	3L_13366747_SNP [dm3] 3L_13373647_SNP [dm6]	T	C	2.029e^-4	0.954	INTERGENIC
3L	4288628	3L_4288628_SNP [dm3] 3L_4288628_SNP [dm6]	G	A	2.030e^-4	0.954	UPSTREAM Hexo1 DOWNSTREAM TfIIEbeta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	13557899	3R_13557899_SNP [dm3] 3R_17732177_SNP [dm6]	C	T	2.031e^-4	0.954	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10040068	3L_10040068_SNP [dm3] 3L_10046968_SNP [dm6]	C	G	2.036e^-4	0.954	INTRON dpr6
2L	258659	2L_258659_SNP [dm3] 2L_258659_SNP [dm6]	T	G	2.037e^-4	0.954	INTRON CG3645
3L	6542320	3L_6542320_SNP [dm3] 3L_6549220_SNP [dm6]	C	G	2.046e^-4	0.954	UTR_3_PRIME sfl
X	7657812	X_7657812_SNP [dm3] X_7763779_SNP [dm6]	A	C	2.050e^-4	0.954	INTERGENIC
2L	8579237	2L_8579237_SNP [dm3] 2L_8579237_SNP [dm6]	T	C	2.055e^-4	0.954	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14418568	2L_14418568_SNP [dm3] 2L_14418568_SNP [dm6]	A	C	2.056e^-4	0.954	INTERGENIC
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	2.059e^-4	0.954	INTRON Cht7
3L	10040767	3L_10040767_SNP [dm3] 3L_10047667_SNP [dm6]	C	G	2.060e^-4	0.954	INTRON dpr6
3R	15673987	3R_15673987_SNP [dm3] 3R_19848265_SNP [dm6]	T	C	2.069e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	18642020	3R_18642020_SNP [dm3] 3R_22816298_SNP [dm6]	T	G	2.073e^-4	0.954	UPSTREAM CG13840 INTERGENIC
3L	23168568	3L_23168568_DEL [dm3] 3L_23175468_DEL [dm6]	CAGTCGAGTTACCCGAC...	C	2.093e^-4	0.954	INTRON CG34031	transposable element FlyBase
X	18237806	X_18237806_DEL [dm3] X_18343773_DEL [dm6]	CTAC	C	2.124e^-4	0.954	INTRON CG6123	TF binding site mE1_TFBS_chinmo
2R	17652529	2R_17652529_SNP [dm3] 2R_21765024_SNP [dm6]	T	A	2.130e^-4	0.954	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3L	13778722	3L_13778722_SNP [dm3] 3L_13785622_SNP [dm6]	C	T	2.138e^-4	0.954	INTRON bru-3
2R	15799429	2R_15799429_SNP [dm3] 2R_19911924_SNP [dm6]	C	G	2.148e^-4	0.954	UPSTREAM CR44573 INTERGENIC
X	10910026	X_10910026_SNP [dm3] X_11015993_SNP [dm6]	C	G	2.150e^-4	0.954	INTRON CG42339	TF binding site mE1_TFBS_inv
3L	7944683	3L_7944683_SNP [dm3] 3L_7951583_SNP [dm6]	A	G	2.154e^-4	0.954	DOWNSTREAM exex INTERGENIC
3R	10763108	3R_10763108_DEL [dm3] 3R_14937386_DEL [dm6]	CC	C	2.162e^-4	0.954	INTERGENIC
2L	15149763	2L_15149763_SNP [dm3] 2L_15149763_SNP [dm6]	G	A	2.162e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	18819482	3L_18819482_SNP [dm3] 3L_18826382_SNP [dm6]	A	T	2.162e^-4	0.954	SYNONYMOUS_CODING Cat
3L	11699295	3L_11699295_SNP [dm3] 3L_11706195_SNP [dm6]	A	C	2.167e^-4	0.954	INTRON CG11658
2L	12454867	2L_12454867_SNP [dm3] 2L_12454867_SNP [dm6]	A	C	2.170e^-4	0.954	DOWNSTREAM bun EXON CR17024
X	3473752	X_3473752_SNP [dm3] X_3579719_SNP [dm6]	C	T	2.171e^-4	0.954	INTRON AstA-R1
3L	11698525	3L_11698525_SNP [dm3] 3L_11705425_SNP [dm6]	G	T	2.178e^-4	0.954	INTRON CG11658
3L	18605442	3L_18605442_SNP [dm3] 3L_18612342_SNP [dm6]	T	C	2.193e^-4	0.954	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
3L	3142165	3L_3142165_SNP [dm3] 3L_3142165_SNP [dm6]	G	A	2.196e^-4	0.954	INTRON CG11537	TF binding site mE1_TFBS_HSA
3L	11119269	3L_11119269_INS [dm3] 3L_11126169_INS [dm6]	A	AGTT	2.198e^-4	0.954	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12697127	2L_12697127_SNP [dm3] 2L_12697127_SNP [dm6]	G	A	2.204e^-4	0.954	NON_SYNONYMOUS_CODING CG5781 INTRON PICK1	TF binding site mE1_TFBS_cad
2L	5561268	2L_5561268_SNP [dm3] 2L_5561268_SNP [dm6]	C	T	2.209e^-4	0.954	SYNONYMOUS_CODING GluRIIB
2R	10265506	2R_10265506_SNP [dm3] 2R_14378001_SNP [dm6]	A	T	2.216e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
X	3548545	X_3548545_SNP [dm3] X_3654512_SNP [dm6]	C	A	2.221e^-4	0.954	INTRON AstA-R1
3L	3846377	3L_3846377_SNP [dm3] 3L_3846377_SNP [dm6]	A	T	2.222e^-4	0.954	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3575990	3L_3575990_SNP [dm3] 3L_3575990_SNP [dm6]	T	A	2.238e^-4	0.954	INTRON Eip63E
2R	12851813	2R_12851813_SNP [dm3] 2R_16964308_SNP [dm6]	C	G	2.238e^-4	0.954	EXON CR44376
3R	26871611	3R_26871611_SNP [dm3] 3R_31045889_SNP [dm6]	C	T	2.239e^-4	0.954	UPSTREAM CG33920 INTRON CanA1
2L	12454739	2L_12454739_SNP [dm3] 2L_12454739_SNP [dm6]	A	C	2.243e^-4	0.954	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
3R	25323203	3R_25323203_SNP [dm3] 3R_29497481_SNP [dm6]	C	T	2.247e^-4	0.954	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13727086	3L_13727086_DEL [dm3] 3L_13733986_DEL [dm6]	CAGTCCGTGAACCCAGAGTC...	C	2.252e^-4	0.954	INTRON bru-3
3R	16410331	3R_16410331_SNP [dm3] 3R_20584609_SNP [dm6]	G	A	2.252e^-4	0.954	INTRON CG16953
X	5447422	X_5447422_SNP [dm3] X_5553389_SNP [dm6]	T	C	2.258e^-4	0.954	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	3754682	3L_3754682_SNP [dm3] 3L_3754682_SNP [dm6]	C	A	2.267e^-4	0.954	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
3R	11693564	3R_11693564_SNP [dm3] 3R_15867842_SNP [dm6]	A	G	2.272e^-4	0.954	INTRON CG31183
2L	17697982	2L_17697982_SNP [dm3] 2L_17697982_SNP [dm6]	G	T	2.276e^-4	0.954	INTRON CadN
3R	17233740	3R_17233740_SNP [dm3] 3R_21408018_SNP [dm6]	T	A	2.284e^-4	0.954	SYNONYMOUS_CODING CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10230626	3L_10230626_SNP [dm3] 3L_10237526_SNP [dm6]	C	T	2.285e^-4	0.954	DOWNSTREAM CR44542 INTERGENIC
3L	3844976	3L_3844976_SNP [dm3] 3L_3844976_SNP [dm6]	T	A	2.302e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	2.325e^-4	0.954	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
3R	4376889	3R_4376889_SNP [dm3] 3R_8551167_SNP [dm6]	C	T	2.326e^-4	0.954	INTERGENIC
X	14223693	X_14223693_SNP [dm3] X_14329660_SNP [dm6]	A	G	2.335e^-4	0.954	INTRON dpr8
3L	2830201	3L_2830201_SNP [dm3] 3L_2830201_SNP [dm6]	A	T	2.340e^-4	0.954	INTRON CG43444
2R	8327275	2R_8327275_SNP [dm3] 2R_12439770_SNP [dm6]	G	A	2.342e^-4	0.954	DOWNSTREAM CG30334 INTRON Dyb
2L	15494326	2L_15494326_SNP [dm3] 2L_15494326_SNP [dm6]	T	A	2.348e^-4	0.954	INTERGENIC
2L	18578047	2L_18578047_SNP [dm3] 2L_18578047_SNP [dm6]	G	C	2.362e^-4	0.954	INTRON Pde11
2L	18578053	2L_18578053_SNP [dm3] 2L_18578053_SNP [dm6]	G	A	2.362e^-4	0.954	INTRON Pde11
X	7322042	X_7322042_SNP [dm3] X_7428009_SNP [dm6]	C	A	2.362e^-4	0.954	INTERGENIC
2L	7548086	2L_7548086_SNP [dm3] 2L_7548086_SNP [dm6]	A	G	2.370e^-4	0.954	INTRON RapGAP1
3L	21460341	3L_21460341_SNP [dm3] 3L_21467241_SNP [dm6]	C	T	2.383e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	15674137	3R_15674137_SNP [dm3] 3R_19848415_SNP [dm6]	G	A	2.395e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	399916	2R_399916_SNP [dm3] 2R_4512411_SNP [dm6]	G	A	2.395e^-4	0.954	INTERGENIC	transposable element FlyBase
2L	7489627	2L_7489627_SNP [dm3] 2L_7489627_SNP [dm6]	A	C	2.401e^-4	0.954	INTRON Ziz
2R	434635	2R_434635_DEL [dm3] 2R_4547130_DEL [dm6]	AGGTTGTTAGATTTTAT...	A	2.406e^-4	0.954	INTRON Stlk	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	5298592	2R_5298592_SNP [dm3] 2R_9411087_SNP [dm6]	C	T	2.417e^-4	0.954	INTRON wun
3R	16715186	3R_16715186_SNP [dm3] 3R_20889464_SNP [dm6]	A	G	2.418e^-4	0.954	INTERGENIC
3R	25944523	3R_25944523_SNP [dm3] 3R_30118801_SNP [dm6]	G	A	2.420e^-4	0.954	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	5814960	2R_5814960_SNP [dm3] 2R_9927455_SNP [dm6]	C	T	2.436e^-4	0.954	INTRON Mef2
2R	19719313	2R_19719313_SNP [dm3] 2R_23831790_SNP [dm6]	G	A	2.437e^-4	0.954	INTRON CG5549
3R	9691764	3R_9691764_SNP [dm3] 3R_13866042_SNP [dm6]	G	A	2.441e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9691783	3R_9691783_SNP [dm3] 3R_13866061_SNP [dm6]	T	A	2.441e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8018049	3L_8018049_SNP [dm3] 3L_8024949_SNP [dm6]	C	T	2.441e^-4	0.954	INTRON nmo	TF binding site BDTNP1_TFBS_dl
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	2.442e^-4	0.954	INTERGENIC
3R	25115974	3R_25115974_SNP [dm3] 3R_29290252_SNP [dm6]	G	A	2.447e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25115975	3R_25115975_SNP [dm3] 3R_29290253_SNP [dm6]	C	T	2.447e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22018049	3R_22018049_SNP [dm3] 3R_26192327_SNP [dm6]	C	G	2.452e^-4	0.954	INTERGENIC
3R	14311182	3R_14311182_SNP [dm3] 3R_18485460_SNP [dm6]	A	T	2.456e^-4	0.954	INTRON fru
2R	10265406	2R_10265406_SNP [dm3] 2R_14377901_SNP [dm6]	G	C	2.458e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2R	6106429	2R_6106429_SNP [dm3] 2R_10218924_SNP [dm6]	T	G	2.461e^-4	0.954	INTRON Hr46 & 1 other
3R	13875546	3R_13875546_SNP [dm3] 3R_18049824_SNP [dm6]	A	G	2.470e^-4	0.954	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23480872	3R_23480872_SNP [dm3] 3R_27655150_SNP [dm6]	C	T	2.481e^-4	0.954	INTRON tau
X	18719403	X_18719403_SNP [dm3] X_18825370_SNP [dm6]	C	T	2.481e^-4	0.954	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21926543	2L_21926543_SNP [dm3] 2L_21926543_SNP [dm6]	G	A	2.484e^-4	0.954	INTERGENIC
2R	20374772	2R_20374772_SNP [dm3] 2R_24487249_SNP [dm6]	T	C	2.490e^-4	0.954	INTRON CG13579	TF binding site mE1_TFBS_cad
X	20554938	X_20554938_SNP [dm3] X_20683911_SNP [dm6]	A	T	2.504e^-4	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	9725791	2L_9725791_SNP [dm3] 2L_9725791_SNP [dm6]	G	T	2.511e^-4	0.954	INTRON Nckx30C
3R	26151939	3R_26151939_SNP [dm3] 3R_30326217_SNP [dm6]	G	A	2.514e^-4	0.954	INTRON hdc	TF binding site mE1_TFBS_chinmo
2R	9115116	2R_9115116_SNP [dm3] 2R_13227611_SNP [dm6]	T	A	2.520e^-4	0.954	UTR_3_PRIME Dp DOWNSTREAM Pex13
3L	513473	3L_513473_SNP [dm3] 3L_513473_SNP [dm6]	C	T	2.527e^-4	0.954	INTRON klar
2L	6205832	2L_6205832_SNP [dm3] 2L_6205832_SNP [dm6]	G	C	2.530e^-4	0.954	INTRON CG34380
3L	13087533	3L_13087533_SNP [dm3] 3L_13094433_SNP [dm6]	C	T	2.540e^-4	0.954	INTERGENIC
3R	23004915	3R_23004915_SNP [dm3] 3R_27179193_SNP [dm6]	G	A	2.541e^-4	0.954	INTRON Ser
2L	15135086	2L_15135086_SNP [dm3] 2L_15135086_SNP [dm6]	G	A	2.542e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15796293	3L_15796293_SNP [dm3] 3L_15803193_SNP [dm6]	C	T	2.542e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11333285	3L_11333285_SNP [dm3] 3L_11340185_SNP [dm6]	G	C	2.549e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2749197	3L_2749197_SNP [dm3] 3L_2749197_SNP [dm6]	A	T	2.553e^-4	0.954	INTRON Mrtf
X	9107598	X_9107598_SNP [dm3] X_9213565_SNP [dm6]	A	T	2.554e^-4	0.954	INTERGENIC
X	10503429	X_10503429_SNP [dm3] X_10609396_SNP [dm6]	C	T	2.557e^-4	0.954	INTRON CG43347
2L	21978469	2L_21978469_SNP [dm3] 2L_21978469_SNP [dm6]	C	T	2.573e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1136713	3L_1136713_SNP [dm3] 3L_1136713_SNP [dm6]	A	G	2.575e^-4	0.954	INTERGENIC
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	2.577e^-4	0.954	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6997101	3L_6997101_SNP [dm3] 3L_7004001_SNP [dm6]	G	T	2.579e^-4	0.954	INTRON Mp
2R	12468163	2R_12468163_SNP [dm3] 2R_16580658_SNP [dm6]	G	T	2.588e^-4	0.954	START_GAINED Cdk4 UTR_5_PRIME Cdk4 UPSTREAM Cdk4 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16715553	3R_16715553_SNP [dm3] 3R_20889831_SNP [dm6]	A	T	2.588e^-4	0.954	UPSTREAM tRNA:CR31480 INTERGENIC
2R	14496902	2R_14496902_SNP [dm3] 2R_18609397_SNP [dm6]	A	G	2.590e^-4	0.954	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8638295	X_8638295_SNP [dm3] X_8744262_SNP [dm6]	T	C	2.602e^-4	0.954	INTERGENIC
3L	18947080	3L_18947080_SNP [dm3] 3L_18953980_SNP [dm6]	A	G	2.611e^-4	0.954	INTRON CG6836
2L	9038555	2L_9038555_SNP [dm3] 2L_9038555_SNP [dm6]	G	A	2.615e^-4	0.954	INTERGENIC
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	2.623e^-4	0.954	INTRON sff
3R	16599417	3R_16599417_SNP [dm3] 3R_20773695_SNP [dm6]	C	T	2.627e^-4	0.954	INTRON Syp	TF binding site BDTNP1_TFBS_twi
2L	16023909	2L_16023909_SNP [dm3] 2L_16023909_SNP [dm6]	T	C	2.628e^-4	0.954	INTRON beat-Ic
2L	16401138	2L_16401138_SNP [dm3] 2L_16401138_SNP [dm6]	G	A	2.638e^-4	0.954	INTRON CG5888
2L	17062225	2L_17062225_SNP [dm3] 2L_17062225_SNP [dm6]	C	T	2.644e^-4	0.954	INTERGENIC
X	21215282	X_21215282_SNP [dm3] X_21344255_SNP [dm6]	G	A	2.644e^-4	0.954	UTR_3_PRIME fliI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16266035	X_16266035_SNP [dm3] X_16372002_SNP [dm6]	G	A	2.648e^-4	0.954	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14265513	2R_14265513_SNP [dm3] 2R_18378008_SNP [dm6]	C	T	2.650e^-4	0.954	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12260751	2R_12260751_SNP [dm3] 2R_16373246_SNP [dm6]	T	A	2.658e^-4	0.954	INTERGENIC
X	5237780	X_5237780_SNP [dm3] X_5343747_SNP [dm6]	C	T	2.658e^-4	0.954	INTRON SK
X	14710651	X_14710651_SNP [dm3] X_14816618_SNP [dm6]	A	C	2.661e^-4	0.954	INTRON rut
3R	18793607	3R_18793607_DEL [dm3] 3R_22967885_DEL [dm6]	ATTCGGCGGTAATTAGA...	A	2.666e^-4	0.954	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22294984	3R_22294984_DEL [dm3] 3R_26469262_DEL [dm6]	TG	T	2.679e^-4	0.954	DOWNSTREAM plum INTRON CG5455
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	2.683e^-4	0.954	INTERGENIC
3R	22024816	3R_22024816_SNP [dm3] 3R_26199094_SNP [dm6]	A	G	2.687e^-4	0.954	INTRON CR44320
2R	8342182	2R_8342182_SNP [dm3] 2R_12454677_SNP [dm6]	T	A	2.697e^-4	0.954	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15149706	2L_15149706_SNP [dm3] 2L_15149706_SNP [dm6]	T	C	2.703e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11581023	3R_11581023_SNP [dm3] 3R_15755301_SNP [dm6]	C	T	2.711e^-4	0.954	INTERGENIC
3R	17860150	3R_17860150_SNP [dm3] 3R_22034428_SNP [dm6]	C	T	2.715e^-4	0.954	UTR_5_PRIME pit UPSTREAM Fadd & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	14489585	2R_14489585_SNP [dm3] 2R_18602080_SNP [dm6]	G	T	2.718e^-4	0.954	INTRON GEFmeso
2R	10141106	2R_10141106_SNP [dm3] 2R_14253601_SNP [dm6]	A	G	2.720e^-4	0.954	SYNONYMOUS_CODING Hsc70-5
2R	5852823	2R_5852823_SNP [dm3] 2R_9965318_SNP [dm6]	T	C	2.724e^-4	0.954	UPSTREAM CG1418 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18645495	3L_18645495_SNP [dm3] 3L_18652395_SNP [dm6]	G	T	2.725e^-4	0.954	INTRON MYPT-75D
2L	15807067	2L_15807067_SNP [dm3] 2L_15807067_SNP [dm6]	A	G	2.728e^-4	0.954	DOWNSTREAM CR44602 INTERGENIC
2R	10265477	2R_10265477_SNP [dm3] 2R_14377972_SNP [dm6]	G	T	2.736e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2R	10265479	2R_10265479_INS [dm3] 2R_14377974_INS [dm6]	C	CC	2.736e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2R	19716518	2R_19716518_SNP [dm3] 2R_23828995_SNP [dm6]	C	T	2.743e^-4	0.954	INTRON CG5549
2L	258656	2L_258656_SNP [dm3] 2L_258656_SNP [dm6]	T	C	2.743e^-4	0.954	INTRON CG3645
3R	15831510	3R_15831510_SNP [dm3] 3R_20005788_SNP [dm6]	T	A	2.754e^-4	0.954	INTRON Hs6st	TF binding site mE1_TFBS_cad
3L	2991855	3L_2991855_SNP [dm3] 3L_2991855_SNP [dm6]	T	G	2.757e^-4	0.954	INTERGENIC
X	20245482	X_20245482_SNP [dm3] X_20374455_SNP [dm6]	C	A	2.771e^-4	0.954	INTERGENIC
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	2.776e^-4	0.954	INTRON AstA-R1
3R	13850445	3R_13850445_SNP [dm3] 3R_18024723_SNP [dm6]	C	A	2.781e^-4	0.954	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
3L	505585	3L_505585_SNP [dm3] 3L_505585_SNP [dm6]	C	A	2.783e^-4	0.954	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	2.786e^-4	0.954	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16383761	2R_16383761_SNP [dm3] 2R_20496256_SNP [dm6]	C	T	2.790e^-4	0.954	INTERGENIC
3L	10842600	3L_10842600_SNP [dm3] 3L_10849500_SNP [dm6]	A	G	2.812e^-4	0.954	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	21699598	3L_21699598_SNP [dm3] 3L_21706498_SNP [dm6]	G	A	2.816e^-4	0.954	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	18390882	3R_18390882_INS [dm3] 3R_22565160_INS [dm6]	T	TGGTA	2.817e^-4	0.954	INTERGENIC
3R	17785992	3R_17785992_SNP [dm3] 3R_21960270_SNP [dm6]	A	T	2.825e^-4	0.954	INTRON Eip93F
X	2830132	X_2830132_SNP [dm3] X_2936099_SNP [dm6]	T	C	2.826e^-4	0.954	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
2L	14535386	2L_14535386_SNP [dm3] 2L_14535386_SNP [dm6]	C	T	2.852e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22067065	3R_22067065_SNP [dm3] 3R_26241343_SNP [dm6]	T	C	2.854e^-4	0.954	INTRON CR42745
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	2.856e^-4	0.954	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13599194	2R_13599194_SNP [dm3] 2R_17711689_SNP [dm6]	G	A	2.861e^-4	0.954	INTRON CG6424	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13778721	3L_13778721_SNP [dm3] 3L_13785621_SNP [dm6]	G	T	2.864e^-4	0.954	INTRON bru-3
3R	15949654	3R_15949654_SNP [dm3] 3R_20123932_SNP [dm6]	G	A	2.867e^-4	0.954	INTERGENIC
X	18717771	X_18717771_SNP [dm3] X_18823738_SNP [dm6]	A	T	2.872e^-4	0.954	INTRON CG42450
3L	2353214	3L_2353214_SNP [dm3] 3L_2353214_SNP [dm6]	T	A	2.886e^-4	0.954	INTERGENIC
X	17326773	X_17326773_SNP [dm3] X_17432740_SNP [dm6]	A	G	2.898e^-4	0.954	INTRON CG12994
3L	10329901	3L_10329901_SNP [dm3] 3L_10336801_SNP [dm6]	A	G	2.905e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	3509817	2L_3509817_SNP [dm3] 2L_3509817_SNP [dm6]	A	G	2.906e^-4	0.954	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
2L	18605134	2L_18605134_SNP [dm3] 2L_18605134_SNP [dm6]	T	A	2.912e^-4	0.954	START_GAINED CG10413 UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16813089	X_16813089_SNP [dm3] X_16919056_SNP [dm6]	C	T	2.913e^-4	0.954	INTRON CG4928
2R	10265448	2R_10265448_INS [dm3] 2R_14377943_INS [dm6]	C	CC	2.922e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2L	1285295	2L_1285295_SNP [dm3] 2L_1285295_SNP [dm6]	C	T	2.949e^-4	0.954	INTRON robo3
2R	16814970	2R_16814970_SNP [dm3] 2R_20927465_SNP [dm6]	G	C	2.961e^-4	0.954	INTRON Rx
3R	24452735	3R_24452735_SNP [dm3] 3R_28627013_SNP [dm6]	T	C	2.961e^-4	0.954	INTRON CG10011
2L	4098697	2L_4098697_SNP [dm3] 2L_4098697_SNP [dm6]	G	A	2.972e^-4	0.954	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	9819848	3R_9819848_SNP [dm3] 3R_13994126_SNP [dm6]	A	T	2.975e^-4	0.954	INTRON rdx
3R	16505497	3R_16505497_SNP [dm3] 3R_20679775_SNP [dm6]	G	A	2.984e^-4	0.954	DOWNSTREAM CR43452 INTERGENIC
3L	3835449	3L_3835449_SNP [dm3] 3L_3835449_SNP [dm6]	C	A	2.988e^-4	0.954	INTRON enc
3L	21699625	3L_21699625_SNP [dm3] 3L_21706525_SNP [dm6]	G	T	2.993e^-4	0.954	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	10504045	2L_10504045_SNP [dm3] 2L_10504045_SNP [dm6]	T	C	2.994e^-4	0.954	INTRON Myo31DF
3R	18094751	3R_18094751_SNP [dm3] 3R_22269029_SNP [dm6]	G	A	2.996e^-4	0.954	INTRON SKIP
2L	1284517	2L_1284517_DEL [dm3] 2L_1284517_DEL [dm6]	GACATGG	G	2.997e^-4	0.954	INTRON robo3
X	16266038	X_16266038_SNP [dm3] X_16372005_SNP [dm6]	T	A	3.002e^-4	0.954	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15933734	2R_15933734_SNP [dm3] 2R_20046229_SNP [dm6]	A	T	3.004e^-4	0.954	INTERGENIC
2R	14990262	2R_14990262_SNP [dm3] 2R_19102757_SNP [dm6]	G	C	3.007e^-4	0.954	INTRON 5-HT1A
3R	16505487	3R_16505487_SNP [dm3] 3R_20679765_SNP [dm6]	C	G	3.018e^-4	0.954	DOWNSTREAM CR43452 INTERGENIC
3R	13090646	3R_13090646_SNP [dm3] 3R_17264924_SNP [dm6]	T	C	3.030e^-4	0.954	UTR_5_PRIME beat-IIb UPSTREAM CG44257
2R	20259856	2R_20259856_SNP [dm3] 2R_24372333_SNP [dm6]	G	A	3.033e^-4	0.954	INTRON bs
2L	2591954	2L_2591954_SNP [dm3] 2L_2591954_SNP [dm6]	C	T	3.034e^-4	0.954	START_GAINED CG15394 UTR_5_PRIME CG15394 UPSTREAM CG15394
2L	2834588	2L_2834588_SNP [dm3] 2L_2834588_SNP [dm6]	A	G	3.035e^-4	0.954	DOWNSTREAM CG3119 INTERGENIC
2R	1745389	2R_1745389_SNP [dm3] 2R_5857884_SNP [dm6]	A	T	3.035e^-4	0.954	INTRON dpr12
2R	2699618	2R_2699618_SNP [dm3] 2R_6812113_SNP [dm6]	C	T	3.038e^-4	0.954	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4204433	X_4204433_SNP [dm3] X_4310400_SNP [dm6]	C	A	3.045e^-4	0.954	DOWNSTREAM CG15579 INTERGENIC
3R	15674195	3R_15674195_SNP [dm3] 3R_19848473_SNP [dm6]	T	A	3.048e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl
2R	10265507	2R_10265507_SNP [dm3] 2R_14378002_SNP [dm6]	T	A	3.053e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
2L	3489587	2L_3489587_SNP [dm3] 2L_3489587_SNP [dm6]	C	A	3.060e^-4	0.954	INTRON CG15414
2L	15121648	2L_15121648_DEL [dm3] 2L_15121648_DEL [dm6]	AA	A	3.075e^-4	0.954	DOWNSTREAM CR43853 INTERGENIC
3L	18928933	3L_18928933_SNP [dm3] 3L_18935833_SNP [dm6]	A	G	3.089e^-4	0.954	INTRON CG32204
2L	9044740	2L_9044740_SNP [dm3] 2L_9044740_SNP [dm6]	T	C	3.090e^-4	0.954	INTERGENIC
2R	8327274	2R_8327274_SNP [dm3] 2R_12439769_SNP [dm6]	C	G	3.090e^-4	0.954	DOWNSTREAM CG30334 INTRON Dyb
2R	13267976	2R_13267976_SNP [dm3] 2R_17380471_SNP [dm6]	A	T	3.112e^-4	0.954	INTERGENIC
X	16606889	X_16606889_DEL [dm3] X_16712856_DEL [dm6]	CTCCCAATCC	C	3.116e^-4	0.954		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19905569	2R_19905569_SNP [dm3] 2R_24018046_SNP [dm6]	G	A	3.118e^-4	0.954	NON_SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	15674219	3R_15674219_SNP [dm3] 3R_19848497_SNP [dm6]	C	T	3.131e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl
2R	7918080	2R_7918080_SNP [dm3] 2R_12030575_SNP [dm6]	C	A	3.131e^-4	0.954	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA
2R	12470353	2R_12470353_SNP [dm3] 2R_16582848_SNP [dm6]	T	G	3.134e^-4	0.954	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5602520	X_5602520_SNP [dm3] X_5708487_SNP [dm6]	C	T	3.139e^-4	0.954	SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site mE1_TFBS_chinmo
3L	15899276	3L_15899276_SNP [dm3] 3L_15906176_SNP [dm6]	C	G	3.140e^-4	0.954	SYNONYMOUS_CODING sff
X	18237800	X_18237800_SNP [dm3] X_18343767_SNP [dm6]	C	T	3.143e^-4	0.954	INTRON CG6123	TF binding site mE1_TFBS_chinmo
3R	14149315	3R_14149315_SNP [dm3] 3R_18323593_SNP [dm6]	G	A	3.155e^-4	0.954	INTRON CG31235
2L	17062166	2L_17062166_SNP [dm3] 2L_17062166_SNP [dm6]	T	C	3.156e^-4	0.954	INTERGENIC
3L	11696410	3L_11696410_SNP [dm3] 3L_11703310_SNP [dm6]	C	A	3.156e^-4	0.954	INTRON CG11658
2L	10814383	2L_10814383_SNP [dm3] 2L_10814383_SNP [dm6]	T	A	3.175e^-4	0.954	INTRON Nos
3L	3842053	3L_3842053_SNP [dm3] 3L_3842053_SNP [dm6]	G	A	3.182e^-4	0.954	UTR_3_PRIME enc DOWNSTREAM enc
X	16097021	X_16097021_SNP [dm3] X_16202988_SNP [dm6]	C	T	3.184e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	9833711	X_9833711_SNP [dm3] X_9939678_SNP [dm6]	A	C	3.186e^-4	0.954	INTERGENIC
3R	24452736	3R_24452736_SNP [dm3] 3R_28627014_SNP [dm6]	C	T	3.189e^-4	0.954	INTRON CG10011
2R	21075664	2R_21075664_SNP [dm3] 2R_25188141_SNP [dm6]	G	T	3.197e^-4	0.954	SYNONYMOUS_CODING CG9380
2L	842995	2L_842995_SNP [dm3] 2L_842995_SNP [dm6]	G	A	3.203e^-4	0.954	UPSTREAM drongo INTRON drongo
2R	15799433	2R_15799433_SNP [dm3] 2R_19911928_SNP [dm6]	G	A	3.213e^-4	0.954	UPSTREAM CR44573 INTERGENIC
3L	6068213	3L_6068213_SNP [dm3] 3L_6075113_SNP [dm6]	G	C	3.222e^-4	0.954	NON_SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	3.223e^-4	0.954	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	6999242	2L_6999242_SNP [dm3] 2L_6999242_SNP [dm6]	G	A	3.233e^-4	0.954	INTRON uif
2R	15693575	2R_15693575_SNP [dm3] 2R_19806070_SNP [dm6]	C	G	3.251e^-4	0.954	INTERGENIC
3R	1910407	3R_1910407_SNP [dm3] 3R_6084685_SNP [dm6]	T	C	3.256e^-4	0.954	INTERGENIC
2R	5305519	2R_5305519_SNP [dm3] 2R_9418014_SNP [dm6]	C	T	3.262e^-4	0.954	DOWNSTREAM wun2 INTERGENIC
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	3.264e^-4	0.954	INTRON Hmgcr
2R	10265183	2R_10265183_SNP [dm3] 2R_14377678_SNP [dm6]	T	C	3.274e^-4	0.954	UPSTREAM Dh44-R1 INTERGENIC
3R	26603570	3R_26603570_SNP [dm3] 3R_30777848_SNP [dm6]	T	A	3.278e^-4	0.954	INTRON zfh1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7550633	2L_7550633_SNP [dm3] 2L_7550633_SNP [dm6]	A	G	3.286e^-4	0.954	INTRON RapGAP1
2L	19075911	2L_19075911_SNP [dm3] 2L_19075911_SNP [dm6]	C	A	3.288e^-4	0.954	UPSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	22996151	3L_22996151_SNP [dm3] 3L_23003051_SNP [dm6]	T	C	3.289e^-4	0.954	INTRON nrm	TF binding site BDTNP1_TFBS_dl
2L	7489803	2L_7489803_SNP [dm3] 2L_7489803_SNP [dm6]	T	C	3.296e^-4	0.954	INTRON Ziz
3L	16203544	3L_16203544_SNP [dm3] 3L_16210444_SNP [dm6]	T	G	3.299e^-4	0.954	INTERGENIC
2L	12715264	2L_12715264_SNP [dm3] 2L_12715264_SNP [dm6]	G	C	3.308e^-4	0.954	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792
2R	5310434	2R_5310434_SNP [dm3] 2R_9422929_SNP [dm6]	A	G	3.320e^-4	0.954	INTRON CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21312699	2L_21312699_SNP [dm3] 2L_21312699_SNP [dm6]	A	T	3.324e^-4	0.954	INTRON crc
3R	16883492	3R_16883492_SNP [dm3] 3R_21057770_SNP [dm6]	T	G	3.342e^-4	0.954	INTRON Mvl	TF binding site mE1_TFBS_sens
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	3.349e^-4	0.954	UPSTREAM hoe1 INTRON hoe1
X	5345003	X_5345003_INS [dm3] X_5450970_INS [dm6]	A	AGGCACTCA	3.360e^-4	0.954	INTRON SPR
2R	20434909	2R_20434909_SNP [dm3] 2R_24547386_SNP [dm6]	G	T	3.366e^-4	0.954	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	235762	2L_235762_SNP [dm3] 2L_235762_SNP [dm6]	G	A	3.376e^-4	0.954	SYNONYMOUS_CODING kis	TF binding site mE1_TFBS_sens
3L	8322062	3L_8322062_SNP [dm3] 3L_8328962_SNP [dm6]	A	G	3.380e^-4	0.954	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
3R	17712325	3R_17712325_INS [dm3] 3R_21886603_INS [dm6]	T	TA	3.381e^-4	0.954	UPSTREAM CG6678 INTRON dnd
3R	13139717	3R_13139717_SNP [dm3] 3R_17313995_SNP [dm6]	T	C	3.385e^-4	0.954	INTERGENIC
3R	16912402	3R_16912402_SNP [dm3] 3R_21086680_SNP [dm6]	A	G	3.387e^-4	0.954	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	24701493	3R_24701493_SNP [dm3] 3R_28875771_SNP [dm6]	T	C	3.388e^-4	0.954	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16974116	2R_16974116_SNP [dm3] 2R_21086611_SNP [dm6]	G	A	3.389e^-4	0.954	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad
2L	9038673	2L_9038673_SNP [dm3] 2L_9038673_SNP [dm6]	C	T	3.398e^-4	0.954	INTERGENIC
3L	18947121	3L_18947121_SNP [dm3] 3L_18954021_SNP [dm6]	A	G	3.400e^-4	0.954	INTRON CG6836
X	18237802	X_18237802_SNP [dm3] X_18343769_SNP [dm6]	T	C	3.401e^-4	0.954	INTRON CG6123	TF binding site mE1_TFBS_chinmo
X	16828580	X_16828580_SNP [dm3] X_16934547_SNP [dm6]	A	T	3.402e^-4	0.954	INTRON CG4928	TF binding site mE1_TFBS_chinmo
X	12088850	X_12088850_SNP [dm3] X_12194817_SNP [dm6]	C	A	3.402e^-4	0.954	INTRON Ten-a
2L	7492645	2L_7492645_SNP [dm3] 2L_7492645_SNP [dm6]	C	A	3.410e^-4	0.954	INTRON Ziz
2L	4145075	2L_4145075_SNP [dm3] 2L_4145075_SNP [dm6]	T	A	3.417e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5364846	X_5364846_SNP [dm3] X_5470813_SNP [dm6]	T	C	3.431e^-4	0.954	INTRON SPR
3L	5689685	3L_5689685_SNP [dm3] 3L_5696585_SNP [dm6]	G	C	3.432e^-4	0.954	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16097528	2L_16097528_SNP [dm3] 2L_16097528_SNP [dm6]	A	G	3.435e^-4	0.954	INTERGENIC
X	8166551	X_8166551_SNP [dm3] X_8272518_SNP [dm6]	T	C	3.438e^-4	0.954	NON_SYNONYMOUS_CODING CG15343 UPSTREAM CG1636 DOWNSTREAM CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11697347	3L_11697347_SNP [dm3] 3L_11704247_SNP [dm6]	T	G	3.448e^-4	0.954	INTRON CG11658
X	11741324	X_11741324_SNP [dm3] X_11847291_SNP [dm6]	T	A	3.450e^-4	0.954	INTERGENIC
2L	12704005	2L_12704005_SNP [dm3] 2L_12704005_SNP [dm6]	C	G	3.460e^-4	0.954	SYNONYMOUS_CODING CG5776 UPSTREAM spict	TF binding site mE1_TFBS_sens
X	4618436	X_4618436_SNP [dm3] X_4724403_SNP [dm6]	T	C	3.462e^-4	0.954	INTRON Proc-R
2L	13620003	2L_13620003_INS [dm3] 2L_13620003_INS [dm6]	A	AGGTATAT	3.473e^-4	0.954	INTRON kuz
2R	10432296	2R_10432296_SNP [dm3] 2R_14544791_SNP [dm6]	G	T	3.487e^-4	0.954	SYNONYMOUS_CODING CG30076 INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13030148	3R_13030148_SNP [dm3] 3R_17204426_SNP [dm6]	A	T	3.494e^-4	0.954	INTERGENIC
3R	12631658	3R_12631658_SNP [dm3] 3R_16805936_SNP [dm6]	A	G	3.502e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6999271	2L_6999271_SNP [dm3] 2L_6999271_SNP [dm6]	G	C	3.504e^-4	0.954	INTRON uif
X	7433272	X_7433272_SNP [dm3] X_7539239_SNP [dm6]	T	A	3.508e^-4	0.954	INTRON CG32719
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	3.508e^-4	0.954	INTRON beat-Vc
2L	4342070	2L_4342070_SNP [dm3] 2L_4342070_SNP [dm6]	T	C	3.508e^-4	0.954	SYNONYMOUS_CODING Atet
3R	13850461	3R_13850461_SNP [dm3] 3R_18024739_SNP [dm6]	C	T	3.531e^-4	0.954	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
3L	6543510	3L_6543510_SNP [dm3] 3L_6550410_SNP [dm6]	T	A	3.531e^-4	0.954	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
X	7532629	X_7532629_SNP [dm3] X_7638596_SNP [dm6]	C	G	3.542e^-4	0.954	INTRON ct
2L	15135058	2L_15135058_SNP [dm3] 2L_15135058_SNP [dm6]	A	C	3.550e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24453135	3R_24453135_SNP [dm3] 3R_28627413_SNP [dm6]	T	C	3.558e^-4	0.954	INTRON CG10011
X	14696710	X_14696710_SNP [dm3] X_14802677_SNP [dm6]	G	A	3.566e^-4	0.954	INTRON rut
2L	10824324	2L_10824324_SNP [dm3] 2L_10824324_SNP [dm6]	G	A	3.567e^-4	0.954	INTRON Nos
3R	19040287	3R_19040287_SNP [dm3] 3R_23214565_SNP [dm6]	C	A	3.572e^-4	0.954	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2L	13944548	2L_13944548_SNP [dm3] 2L_13944548_SNP [dm6]	A	T	3.581e^-4	0.954	DOWNSTREAM CG16884 INTRON Ance-3
3L	17685051	3L_17685051_SNP [dm3] 3L_17691951_SNP [dm6]	G	T	3.584e^-4	0.954	INTRON Ccn
2L	13944549	2L_13944549_SNP [dm3] 2L_13944549_SNP [dm6]	T	A	3.590e^-4	0.954	DOWNSTREAM CG16884 INTRON Ance-3
3L	13724740	3L_13724740_DEL [dm3] 3L_13731640_DEL [dm6]	GCCACAT	G	3.597e^-4	0.954	INTRON bru-3
2R	16728989	2R_16728989_SNP [dm3] 2R_20841484_SNP [dm6]	G	T	3.608e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12464689	2R_12464689_SNP [dm3] 2R_16577184_SNP [dm6]	G	A	3.623e^-4	0.954	UPSTREAM CG8317 INTERGENIC
2R	9476276	2R_9476276_SNP [dm3] 2R_13588771_SNP [dm6]	G	C	3.627e^-4	0.954	INTRON CG6191 & 1 other
X	3546118	X_3546118_SNP [dm3] X_3652085_SNP [dm6]	C	A	3.635e^-4	0.954	INTRON AstA-R1
2L	4146536	2L_4146536_SNP [dm3] 2L_4146536_SNP [dm6]	A	C	3.635e^-4	0.954	INTERGENIC
3R	14861894	3R_14861894_SNP [dm3] 3R_19036172_SNP [dm6]	G	T	3.639e^-4	0.954	INTRON CG6026	TF binding site mE1_TFBS_inv
2L	6205950	2L_6205950_SNP [dm3] 2L_6205950_SNP [dm6]	T	C	3.649e^-4	0.954	INTRON CG34380	TF binding site BDTNP1_TFBS_da
2R	18788056	2R_18788056_SNP [dm3] 2R_22900533_SNP [dm6]	G	T	3.669e^-4	0.954	INTRON nahoda
3L	3142357	3L_3142357_SNP [dm3] 3L_3142357_SNP [dm6]	A	G	3.672e^-4	0.954	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11828865	2L_11828865_SNP [dm3] 2L_11828865_SNP [dm6]	T	C	3.678e^-4	0.954	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22996141	3L_22996141_SNP [dm3] 3L_23003041_SNP [dm6]	C	T	3.679e^-4	0.954	INTRON nrm	TF binding site BDTNP1_TFBS_dl
2L	6512765	2L_6512765_MNP [dm3] 2L_6512765_MNP [dm6]	AAT	TTC	3.680e^-4	0.954	INTRON CG31637
3L	17404493	3L_17404493_SNP [dm3] 3L_17411393_SNP [dm6]	T	A	3.681e^-4	0.954	INTRON blot	TF binding site mE1_TFBS_kn
3R	26871116	3R_26871116_SNP [dm3] 3R_31045394_SNP [dm6]	G	A	3.685e^-4	0.954	UPSTREAM CG33920 INTRON CanA1
3R	19695797	3R_19695797_SNP [dm3] 3R_23870075_SNP [dm6]	T	C	3.699e^-4	0.954	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17694518	2R_17694518_SNP [dm3] 2R_21807013_SNP [dm6]	T	C	3.701e^-4	0.954	INTERGENIC
3R	26871143	3R_26871143_SNP [dm3] 3R_31045421_SNP [dm6]	C	T	3.704e^-4	0.954	UPSTREAM CG33920 INTRON CanA1
2L	12182367	2L_12182367_SNP [dm3] 2L_12182367_SNP [dm6]	T	C	3.704e^-4	0.954	INTRON aret
2R	11920982	2R_11920982_DEL [dm3] 2R_16033477_DEL [dm6]	TACATCAT	T	3.705e^-4	0.954	INTRON SP2353
2R	15766219	2R_15766219_SNP [dm3] 2R_19878714_SNP [dm6]	T	A	3.710e^-4	0.954	DOWNSTREAM CG13872 INTERGENIC
X	1325271	X_1325271_DEL [dm3] X_1431238_DEL [dm6]	AA	A	3.720e^-4	0.954	INTRON futsch	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo
2L	7488764	2L_7488764_SNP [dm3] 2L_7488764_SNP [dm6]	C	T	3.724e^-4	0.954	INTRON Ziz
3L	7712676	3L_7712676_SNP [dm3] 3L_7719576_SNP [dm6]	G	A	3.728e^-4	0.954	INTRON CG32373 & 1 other
2R	11924177	2R_11924177_SNP [dm3] 2R_16036672_SNP [dm6]	A	G	3.728e^-4	0.954	INTRON SP2353	TF binding site BDTNP1_TFBS_dl
3L	6502670	3L_6502670_SNP [dm3] 3L_6509570_SNP [dm6]	T	G	3.734e^-4	0.954	INTRON sfl
3L	6502678	3L_6502678_SNP [dm3] 3L_6509578_SNP [dm6]	T	A	3.734e^-4	0.954	INTRON sfl
2R	18154366	2R_18154366_SNP [dm3] 2R_22266861_SNP [dm6]	T	G	3.737e^-4	0.954	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	15879546	3L_15879546_SNP [dm3] 3L_15886446_SNP [dm6]	G	A	3.756e^-4	0.954	UPSTREAM CR44050 INTRON pHCl
2R	6084691	2R_6084691_SNP [dm3] 2R_10197186_SNP [dm6]	G	T	3.761e^-4	0.954	UTR_3_PRIME CG34221 DOWNSTREAM CG34221	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9027768	3L_9027768_SNP [dm3] 3L_9034668_SNP [dm6]	C	T	3.762e^-4	0.954	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18792742	3R_18792742_SNP [dm3] 3R_22967020_SNP [dm6]	T	C	3.772e^-4	0.954	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
2R	10701770	2R_10701770_SNP [dm3] 2R_14814265_SNP [dm6]	T	A	3.805e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13447685	3R_13447685_SNP [dm3] 3R_17621963_SNP [dm6]	A	G	3.809e^-4	0.954	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
2L	3584266	2L_3584266_SNP [dm3] 2L_3584266_SNP [dm6]	C	G	3.811e^-4	0.954	INTERGENIC
2L	2602377	2L_2602377_SNP [dm3] 2L_2602377_SNP [dm6]	C	T	3.811e^-4	0.954	UPSTREAM CR44789 INTERGENIC
2L	13944545	2L_13944545_INS [dm3] 2L_13944545_INS [dm6]	T	TTCC	3.818e^-4	0.954	DOWNSTREAM CG16884 INTRON Ance-3
2L	10616018	2L_10616018_SNP [dm3] 2L_10616018_SNP [dm6]	C	A	3.818e^-4	0.954	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2R	14357003	2R_14357003_SNP [dm3] 2R_18469498_SNP [dm6]	T	G	3.826e^-4	0.954	SPLICE_SITE_REGION CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	3.828e^-4	0.954	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7905393	2L_7905393_SNP [dm3] 2L_7905393_SNP [dm6]	C	A	3.829e^-4	0.954	INTRON Snoo	TF binding site mE1_TFBS_chinmo
X	16844980	X_16844980_SNP [dm3] X_16950947_SNP [dm6]	T	C	3.835e^-4	0.954	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3R	13447455	3R_13447455_SNP [dm3] 3R_17621733_SNP [dm6]	C	T	3.839e^-4	0.954	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	5691635	3L_5691635_SNP [dm3] 3L_5698535_SNP [dm6]	A	C	3.843e^-4	0.954	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14861900	3R_14861900_SNP [dm3] 3R_19036178_SNP [dm6]	C	T	3.852e^-4	0.954	INTRON CG6026	TF binding site mE1_TFBS_inv
X	2690651	X_2690651_SNP [dm3] X_2796618_SNP [dm6]	T	A	3.854e^-4	0.954	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	3.854e^-4	0.954	INTRON Ggamma30A
2R	8339409	2R_8339409_SNP [dm3] 2R_12451904_SNP [dm6]	T	A	3.854e^-4	0.954	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3548056	X_3548056_SNP [dm3] X_3654023_SNP [dm6]	A	C	3.856e^-4	0.954	INTRON AstA-R1
3R	13460341	3R_13460341_SNP [dm3] 3R_17634619_SNP [dm6]	C	T	3.864e^-4	0.954	INTRON CG43175
X	5602740	X_5602740_INS [dm3] X_5708707_INS [dm6]	T	TTAC	3.873e^-4	0.954	UTR_3_PRIME CG33080 DOWNSTREAM CG4096
3R	12628819	3R_12628819_SNP [dm3] 3R_16803097_SNP [dm6]	T	C	3.873e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14045680	2R_14045680_DEL [dm3] 2R_18158175_DEL [dm6]	TT	T	3.876e^-4	0.954	UTR_5_PRIME lolal UPSTREAM CG10914 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
X	9085253	X_9085253_SNP [dm3] X_9191220_SNP [dm6]	G	T	3.888e^-4	0.954	UPSTREAM CG12115 & 1 other INTERGENIC
2R	409302	2R_409302_SNP [dm3] 2R_4521797_SNP [dm6]	T	C	3.898e^-4	0.954	INTERGENIC
2L	9038524	2L_9038524_INS [dm3] 2L_9038524_INS [dm6]	G	GG	3.905e^-4	0.954	INTERGENIC
3L	12613437	3L_12613437_SNP [dm3] 3L_12620337_SNP [dm6]	C	G	3.912e^-4	0.954	NON_SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16987653	2L_16987653_SNP [dm3] 2L_16987653_SNP [dm6]	T	A	3.917e^-4	0.954	INTRON beat-IIIb
3R	16519098	3R_16519098_SNP [dm3] 3R_20693376_SNP [dm6]	T	C	3.927e^-4	0.954	SYNONYMOUS_CODING Oamb INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10709014	X_10709014_DEL [dm3] X_10814981_DEL [dm6]	GG	G	3.931e^-4	0.954	INTRON Imp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15674204	3R_15674204_SNP [dm3] 3R_19848482_SNP [dm6]	A	G	3.947e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl
3R	16887193	3R_16887193_DEL [dm3] 3R_21061471_DEL [dm6]	ATTCGGCCCATCCAAGAA...	A	3.951e^-4	0.954	UPSTREAM Mvl DOWNSTREAM Cortactin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	15124859	2L_15124859_SNP [dm3] 2L_15124859_SNP [dm6]	T	A	3.954e^-4	0.954	INTERGENIC
3L	5087467	3L_5087467_SNP [dm3] 3L_5087467_SNP [dm6]	T	C	3.961e^-4	0.954	INTERGENIC
3L	22920931	3L_22920931_SNP [dm3] 3L_22927831_SNP [dm6]	G	C	3.962e^-4	0.954	INTERGENIC
2L	7490346	2L_7490346_SNP [dm3] 2L_7490346_SNP [dm6]	C	T	3.966e^-4	0.954	INTRON Ziz
3L	2439565	3L_2439565_SNP [dm3] 3L_2439565_SNP [dm6]	G	C	3.974e^-4	0.954	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12538659	3L_12538659_SNP [dm3] 3L_12545559_SNP [dm6]	A	G	3.976e^-4	0.954	INTRON sowah
3R	22617296	3R_22617296_INS [dm3] 3R_26791574_INS [dm6]	G	GTTCCGTTCCG...	3.984e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9972515	2L_9972515_SNP [dm3] 2L_9972515_SNP [dm6]	C	T	3.993e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25244330	3R_25244330_INS [dm3] 3R_29418608_INS [dm6]	A	AACCCAAGGCTGTAATTTGA...	3.997e^-4	0.954	INTRON Ptp99A
2L	258898	2L_258898_SNP [dm3] 2L_258898_SNP [dm6]	A	C	4.004e^-4	0.954	INTRON CG3645
3L	5664450	3L_5664450_SNP [dm3] 3L_5671350_SNP [dm6]	G	T	4.006e^-4	0.954	INTRON sif
2R	11850307	2R_11850307_SNP [dm3] 2R_15962802_SNP [dm6]	C	T	4.009e^-4	0.954	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2L	2894596	2L_2894596_SNP [dm3] 2L_2894596_SNP [dm6]	A	G	4.012e^-4	0.954	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23570593	3R_23570593_SNP [dm3] 3R_27744871_SNP [dm6]	T	C	4.018e^-4	0.954	INTRON Ets98B
2L	4624350	2L_4624350_SNP [dm3] 2L_4624350_SNP [dm6]	A	G	4.018e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
X	20555597	X_20555597_SNP [dm3] X_20684570_SNP [dm6]	C	T	4.019e^-4	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	8018366	3L_8018366_SNP [dm3] 3L_8025266_SNP [dm6]	G	A	4.020e^-4	0.954	INTRON nmo
2L	7470846	2L_7470846_SNP [dm3] 2L_7470846_SNP [dm6]	T	C	4.025e^-4	0.954	UPSTREAM CG6055 INTRON CG6055
3R	6724126	3R_6724126_SNP [dm3] 3R_10898404_SNP [dm6]	T	C	4.026e^-4	0.954	EXON CR45578	TF binding site mE1_TFBS_sbb
2R	6106496	2R_6106496_DEL [dm3] 2R_10218991_DEL [dm6]	CATTGTTTATTCCC...	C	4.032e^-4	0.954	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_dl
X	908571	X_908571_DEL [dm3] X_1014538_DEL [dm6]	GCTATGCAG	G	4.036e^-4	0.954	UTR_3_PRIME CG11638 INTRON su_w[a]_
3R	16514202	3R_16514202_SNP [dm3] 3R_20688480_SNP [dm6]	T	A	4.050e^-4	0.954	DOWNSTREAM Oamb INTERGENIC
2R	2787851	2R_2787851_SNP [dm3] 2R_6900346_SNP [dm6]	G	C	4.074e^-4	0.954	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	4.082e^-4	0.954	INTERGENIC
2L	132010	2L_132010_SNP [dm3] 2L_132010_SNP [dm6]	A	C	4.085e^-4	0.954	UPSTREAM Gs1 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
X	2690567	X_2690567_SNP [dm3] X_2796534_SNP [dm6]	T	C	4.087e^-4	0.954	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16520414	3R_16520414_SNP [dm3] 3R_20694692_SNP [dm6]	T	A	4.098e^-4	0.954	INTRON Oamb
X	18353949	X_18353949_SNP [dm3] X_18459916_SNP [dm6]	C	T	4.107e^-4	0.954	NON_SYNONYMOUS_CODING CG43843 UPSTREAM CR43842 INTRON CG32547
2R	18154331	2R_18154331_SNP [dm3] 2R_22266826_SNP [dm6]	A	T	4.109e^-4	0.954	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	5996964	X_5996964_SNP [dm3] X_6102931_SNP [dm6]	C	A	4.110e^-4	0.954	INTRON Nep1	TF binding site mE1_TFBS_chinmo
X	13870282	X_13870282_SNP [dm3] X_13976249_SNP [dm6]	T	C	4.114e^-4	0.954	INTRON mamo
X	17813637	X_17813637_SNP [dm3] X_17919604_SNP [dm6]	T	G	4.120e^-4	0.954	INTRON CG6847
3L	598128	3L_598128_SNP [dm3] 3L_598128_SNP [dm6]	C	T	4.136e^-4	0.954	SYNONYMOUS_CODING MED14 DOWNSTREAM CG13893	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2488122	2L_2488122_SNP [dm3] 2L_2488122_SNP [dm6]	T	A	4.139e^-4	0.954	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	9078171	2R_9078171_DEL [dm3] 2R_13190666_DEL [dm6]	ACAGA	A	4.141e^-4	0.954	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5447380	X_5447380_DEL [dm3] X_5553347_DEL [dm6]	CGCAAGAGGGATTGC...	C	4.141e^-4	0.954	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	9349365	3L_9349365_SNP [dm3] 3L_9356265_SNP [dm6]	T	C	4.144e^-4	0.954	DOWNSTREAM CG32040 INTRON UGP
2R	14265435	2R_14265435_SNP [dm3] 2R_18377930_SNP [dm6]	G	C	4.151e^-4	0.954	EXON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16021249	2L_16021249_SNP [dm3] 2L_16021249_SNP [dm6]	C	T	4.156e^-4	0.954	INTRON beat-Ic
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	4.160e^-4	0.954	INTRON aPKC
3L	15296206	3L_15296206_SNP [dm3] 3L_15303106_SNP [dm6]	G	T	4.168e^-4	0.954	UPSTREAM Best3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10069791	3L_10069791_SNP [dm3] 3L_10076691_SNP [dm6]	T	A	4.171e^-4	0.954	INTRON dpr6
2L	8985112	2L_8985112_SNP [dm3] 2L_8985112_SNP [dm6]	G	T	4.175e^-4	0.954	UPSTREAM CG13101 DOWNSTREAM rost INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3546025	X_3546025_SNP [dm3] X_3651992_SNP [dm6]	A	G	4.198e^-4	0.954	INTRON AstA-R1
2L	12498119	2L_12498119_SNP [dm3] 2L_12498119_SNP [dm6]	C	A	4.201e^-4	0.954	UPSTREAM t-cup INTRON bun
X	14696755	X_14696755_SNP [dm3] X_14802722_SNP [dm6]	G	A	4.209e^-4	0.954	INTRON rut
X	8738481	X_8738481_SNP [dm3] X_8844448_SNP [dm6]	C	T	4.213e^-4	0.954	INTRON CG12075
3R	17706278	3R_17706278_SNP [dm3] 3R_21880556_SNP [dm6]	A	C	4.215e^-4	0.954	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG31465 EXON CR45046
3R	4352401	3R_4352401_SNP [dm3] 3R_8526679_SNP [dm6]	T	A	4.225e^-4	0.954	DOWNSTREAM CG31259 INTERGENIC
3L	10565363	3L_10565363_SNP [dm3] 3L_10572263_SNP [dm6]	C	A	4.228e^-4	0.954	INTRON A2bp1
3R	21238207	3R_21238207_SNP [dm3] 3R_25412485_SNP [dm6]	A	G	4.228e^-4	0.954	INTRON Fur1
2L	7490357	2L_7490357_SNP [dm3] 2L_7490357_SNP [dm6]	A	G	4.244e^-4	0.954	INTRON Ziz
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	4.250e^-4	0.954	INTRON Hil
2L	1591089	2L_1591089_SNP [dm3] 2L_1591089_SNP [dm6]	G	C	4.262e^-4	0.954	INTRON haf
2L	9041790	2L_9041790_SNP [dm3] 2L_9041790_SNP [dm6]	C	T	4.265e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_sens
2R	15904149	2R_15904149_SNP [dm3] 2R_20016644_SNP [dm6]	G	A	4.269e^-4	0.954	EXON CR44630	TF binding site mE1_TFBS_chinmo
X	18718099	X_18718099_SNP [dm3] X_18824066_SNP [dm6]	G	A	4.271e^-4	0.954	INTRON CG42450
2L	7492720	2L_7492720_SNP [dm3] 2L_7492720_SNP [dm6]	A	T	4.293e^-4	0.954	INTRON Ziz
2L	855323	2L_855323_SNP [dm3] 2L_855323_SNP [dm6]	G	A	4.298e^-4	0.954	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	4.299e^-4	0.954	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18145505	2R_18145505_DEL [dm3] 2R_22258000_DEL [dm6]	GG	G	4.299e^-4	0.954	INTRON dve	TF binding site mE1_TFBS_chinmo
3R	13447469	3R_13447469_SNP [dm3] 3R_17621747_SNP [dm6]	C	G	4.305e^-4	0.954	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3R	18588565	3R_18588565_SNP [dm3] 3R_22762843_SNP [dm6]	C	T	4.308e^-4	0.954	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2L	18249785	2L_18249785_SNP [dm3] 2L_18249785_SNP [dm6]	C	A	4.313e^-4	0.954	INTRON CG42750
2L	2079714	2L_2079714_SNP [dm3] 2L_2079714_SNP [dm6]	T	C	4.314e^-4	0.954	UPSTREAM CG12674 INTRON dpr3
X	14696731	X_14696731_SNP [dm3] X_14802698_SNP [dm6]	C	T	4.316e^-4	0.954	INTRON rut
X	14696753	X_14696753_INS [dm3] X_14802720_INS [dm6]	A	AGTCATCC	4.316e^-4	0.954	INTRON rut
X	14696761	X_14696761_INS [dm3] X_14802728_INS [dm6]	G	CATTTATCCTTTTATGAAAT...	4.316e^-4	0.954	INTRON rut
3R	25907851	3R_25907851_SNP [dm3] 3R_30082129_SNP [dm6]	C	A	4.318e^-4	0.954	INTRON sima
3R	24537872	3R_24537872_SNP [dm3] 3R_28712150_SNP [dm6]	C	A	4.323e^-4	0.954	INTRON htt
3R	7500896	3R_7500896_SNP [dm3] 3R_11675174_SNP [dm6]	A	G	4.323e^-4	0.954	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19874228	3R_19874228_SNP [dm3] 3R_24048506_SNP [dm6]	C	T	4.325e^-4	0.954	SYNONYMOUS_CODING CG5986 UPSTREAM Rox8 DOWNSTREAM Atg6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4428307	3L_4428307_INS [dm3] 3L_4428307_INS [dm6]	A	AA	4.329e^-4	0.954	INTERGENIC
2R	13834005	2R_13834005_SNP [dm3] 2R_17946500_SNP [dm6]	G	A	4.339e^-4	0.954	INTERGENIC
3R	11838107	3R_11838107_SNP [dm3] 3R_16012385_SNP [dm6]	C	G	4.342e^-4	0.954	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	11838618	3R_11838618_SNP [dm3] 3R_16012896_SNP [dm6]	C	G	4.343e^-4	0.954	INTRON GATAe	TF binding site BDTNP1_TFBS_da
3L	13127366	3L_13127366_SNP [dm3] 3L_13134266_SNP [dm6]	C	T	4.351e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5913750	2L_5913750_SNP [dm3] 2L_5913750_SNP [dm6]	T	C	4.352e^-4	0.954	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3L	18717459	3L_18717459_SNP [dm3] 3L_18724359_SNP [dm6]	A	C	4.354e^-4	0.954	DOWNSTREAM CR43985 INTERGENIC
3L	12100472	3L_12100472_DEL [dm3] 3L_12107372_DEL [dm6]	AACTAAA	A	4.357e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3548052	X_3548052_SNP [dm3] X_3654019_SNP [dm6]	T	C	4.359e^-4	0.954	INTRON AstA-R1
3R	17215667	3R_17215667_SNP [dm3] 3R_21389945_SNP [dm6]	T	C	4.363e^-4	0.954	SYNONYMOUS_CODING bap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7451068	2L_7451068_DEL [dm3] 2L_7451068_DEL [dm6]	GTGGA	G	4.365e^-4	0.954	UTR_5_PRIME santa-maria
X	3557195	X_3557195_SNP [dm3] X_3663162_SNP [dm6]	T	A	4.371e^-4	0.954	INTRON AstA-R1	transposable element FlyBase
3R	2714046	3R_2714046_SNP [dm3] 3R_6888324_SNP [dm6]	T	A	4.385e^-4	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18060139	3R_18060139_SNP [dm3] 3R_22234417_SNP [dm6]	T	C	4.386e^-4	0.954	INTRON SKIP
2L	6205891	2L_6205891_SNP [dm3] 2L_6205891_SNP [dm6]	C	T	4.390e^-4	0.954	INTRON CG34380	TF binding site BDTNP1_TFBS_da
4	1045094	4_1045094_SNP [dm3] 4_1024468_SNP [dm6]	A	C	4.393e^-4	0.954	INTRON PlexA	transposable element FlyBase
3R	13604736	3R_13604736_SNP [dm3] 3R_17779014_SNP [dm6]	G	A	4.404e^-4	0.954	SYNONYMOUS_CODING CG43102	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_chinmo
X	5344995	X_5344995_SNP [dm3] X_5450962_SNP [dm6]	A	T	4.408e^-4	0.954	INTRON SPR
X	16827390	X_16827390_SNP [dm3] X_16933357_SNP [dm6]	G	T	4.413e^-4	0.954	INTRON CG4928
3L	13778673	3L_13778673_SNP [dm3] 3L_13785573_SNP [dm6]	A	T	4.416e^-4	0.954	INTRON bru-3
2L	9172842	2L_9172842_SNP [dm3] 2L_9172842_SNP [dm6]	A	G	4.417e^-4	0.954	INTRON tai
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	4.437e^-4	0.954	NON_SYNONYMOUS_CODING jnj
2R	5462121	2R_5462121_SNP [dm3] 2R_9574616_SNP [dm6]	C	T	4.445e^-4	0.954	SYNONYMOUS_CODING Not1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6106410	2R_6106410_SNP [dm3] 2R_10218905_SNP [dm6]	A	T	4.456e^-4	0.954	INTRON Hr46 & 1 other
2R	9115705	2R_9115705_SNP [dm3] 2R_13228200_SNP [dm6]	G	T	4.459e^-4	0.954	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3R	18250131	3R_18250131_SNP [dm3] 3R_22424409_SNP [dm6]	G	A	4.460e^-4	0.954	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
3R	14611051	3R_14611051_SNP [dm3] 3R_18785329_SNP [dm6]	C	T	4.464e^-4	0.954	INTRON CG7720
3L	17352334	3L_17352334_SNP [dm3] 3L_17359234_SNP [dm6]	A	T	4.466e^-4	0.954	UPSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	25801374	3R_25801374_SNP [dm3] 3R_29975652_SNP [dm6]	C	T	4.466e^-4	0.954	INTERGENIC
2L	7488773	2L_7488773_SNP [dm3] 2L_7488773_SNP [dm6]	A	C	4.467e^-4	0.954	INTRON Ziz
3L	11699269	3L_11699269_SNP [dm3] 3L_11706169_SNP [dm6]	G	T	4.477e^-4	0.954	INTRON CG11658
3R	17885684	3R_17885684_SNP [dm3] 3R_22059962_SNP [dm6]	A	T	4.498e^-4	0.954	INTRON how
2L	14305453	2L_14305453_SNP [dm3] 2L_14305453_SNP [dm6]	C	T	4.505e^-4	0.954	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	7433339	X_7433339_SNP [dm3] X_7539306_SNP [dm6]	C	T	4.509e^-4	0.954	INTRON CG32719
2R	14542290	2R_14542290_SNP [dm3] 2R_18654785_SNP [dm6]	A	G	4.512e^-4	0.954	INTRON SP2637	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5302045	3L_5302045_SNP [dm3] 3L_5308945_SNP [dm6]	C	T	4.515e^-4	0.954	INTERGENIC
3L	6836031	3L_6836031_SNP [dm3] 3L_6842931_SNP [dm6]	C	T	4.518e^-4	0.954	INTERGENIC
3L	1997165	3L_1997165_SNP [dm3] 3L_1997165_SNP [dm6]	T	C	4.518e^-4	0.954	INTERGENIC
3L	18384204	3L_18384204_SNP [dm3] 3L_18391104_SNP [dm6]	A	G	4.523e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10488697	3L_10488697_SNP [dm3] 3L_10495597_SNP [dm6]	C	T	4.545e^-4	0.954	INTRON A2bp1
3L	7510766	3L_7510766_SNP [dm3] 3L_7517666_SNP [dm6]	C	A	4.566e^-4	0.954	DOWNSTREAM CG7546 INTERGENIC
3R	16616373	3R_16616373_SNP [dm3] 3R_20790651_SNP [dm6]	G	C	4.567e^-4	0.954	INTRON Syp
3L	2183022	3L_2183022_SNP [dm3] 3L_2183022_SNP [dm6]	A	G	4.586e^-4	0.954	INTERGENIC
2L	854654	2L_854654_SNP [dm3] 2L_854654_SNP [dm6]	A	G	4.599e^-4	0.954	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	2823489	2R_2823489_SNP [dm3] 2R_6935984_SNP [dm6]	A	G	4.600e^-4	0.954	SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	4.603e^-4	0.954	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3R	20493675	3R_20493675_SNP [dm3] 3R_24667953_SNP [dm6]	C	T	4.615e^-4	0.954	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2R	5795876	2R_5795876_SNP [dm3] 2R_9908371_SNP [dm6]	G	T	4.615e^-4	0.954	INTRON FMRFa
X	13333484	X_13333484_SNP [dm3] X_13439451_SNP [dm6]	A	G	4.621e^-4	0.954	INTERGENIC
X	16097024	X_16097024_DEL [dm3] X_16202991_DEL [dm6]	CT	C	4.628e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	16333418	2L_16333418_SNP [dm3] 2L_16333418_SNP [dm6]	T	C	4.629e^-4	0.954	NON_SYNONYMOUS_CODING CG31817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	402396	2R_402396_DEL [dm3] 2R_4514891_DEL [dm6]	TT	A	4.638e^-4	0.954	DOWNSTREAM RpL38 INTERGENIC
X	16955500	X_16955500_SNP [dm3] X_17061467_SNP [dm6]	G	A	4.639e^-4	0.954	INTRON CG45002
X	16955629	X_16955629_SNP [dm3] X_17061596_SNP [dm6]	A	T	4.639e^-4	0.954	INTRON CG45002
2R	15060981	2R_15060981_SNP [dm3] 2R_19173476_SNP [dm6]	G	C	4.646e^-4	0.954	SYNONYMOUS_CODING CG10737
3L	5087417	3L_5087417_SNP [dm3] 3L_5087417_SNP [dm6]	G	A	4.648e^-4	0.954	INTERGENIC
2L	15135088	2L_15135088_SNP [dm3] 2L_15135088_SNP [dm6]	G	C	4.655e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6011066	3L_6011066_SNP [dm3] 3L_6017966_SNP [dm6]	G	C	4.659e^-4	0.954	INTRON PVRAP
2L	9041761	2L_9041761_SNP [dm3] 2L_9041761_SNP [dm6]	C	T	4.660e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_sens
3L	12411876	3L_12411876_SNP [dm3] 3L_12418776_SNP [dm6]	A	G	4.663e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15807147	2L_15807147_SNP [dm3] 2L_15807147_SNP [dm6]	C	A	4.680e^-4	0.954	DOWNSTREAM CR44602 INTERGENIC
2L	16016806	2L_16016806_SNP [dm3] 2L_16016806_SNP [dm6]	C	G	4.686e^-4	0.954	INTRON beat-Ic
2R	4829655	2R_4829655_SNP [dm3] 2R_8942150_SNP [dm6]	T	A	4.690e^-4	0.954	EXON CR44273
3L	10621109	3L_10621109_SNP [dm3] 3L_10628009_SNP [dm6]	T	A	4.703e^-4	0.954	DOWNSTREAM CG34238 INTRON CG14151	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	14612760	3R_14612760_DEL [dm3] 3R_18787038_DEL [dm6]	TTGG	T	4.704e^-4	0.954	INTRON CG7720
2L	12703970	2L_12703970_SNP [dm3] 2L_12703970_SNP [dm6]	T	G	4.708e^-4	0.954	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
2L	16359588	2L_16359588_SNP [dm3] 2L_16359588_SNP [dm6]	T	C	4.713e^-4	0.954	INTERGENIC
3L	6531960	3L_6531960_SNP [dm3] 3L_6538860_SNP [dm6]	A	G	4.714e^-4	0.954	INTRON sfl
3L	11507425	3L_11507425_SNP [dm3] 3L_11514325_SNP [dm6]	G	A	4.720e^-4	0.954	DOWNSTREAM Sgs3 INTRON CG7512
2L	177565	2L_177565_SNP [dm3] 2L_177565_SNP [dm6]	C	A	4.722e^-4	0.954	INTRON spen
3R	6574353	3R_6574353_SNP [dm3] 3R_10748631_SNP [dm6]	C	T	4.724e^-4	0.954	INTRON TkR86C
3R	22748374	3R_22748374_DEL [dm3] 3R_26922652_DEL [dm6]	GAG	G	4.728e^-4	0.954	INTRON sda
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	4.734e^-4	0.954	INTERGENIC
2R	7547155	2R_7547155_SNP [dm3] 2R_11659650_SNP [dm6]	G	A	4.759e^-4	0.954	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19325085	3R_19325085_DEL [dm3] 3R_23499363_DEL [dm6]	AATCAACGTCTAAA...	A	4.762e^-4	0.954	INTERGENIC
2R	10273765	2R_10273765_SNP [dm3] 2R_14386260_SNP [dm6]	A	G	4.763e^-4	0.954	DOWNSTREAM Dh44-R1 INTERGENIC
2L	18618120	2L_18618120_DEL [dm3] 2L_18618120_DEL [dm6]	TT	T	4.769e^-4	0.954	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18248824	2L_18248824_SNP [dm3] 2L_18248824_SNP [dm6]	C	T	4.782e^-4	0.954	INTRON CG42750
3L	14379023	3L_14379023_SNP [dm3] 3L_14385923_SNP [dm6]	G	C	4.795e^-4	0.954	INTERGENIC
2R	7277868	2R_7277868_SNP [dm3] 2R_11390363_SNP [dm6]	A	G	4.795e^-4	0.954	INTRON sprt
2R	12794150	2R_12794150_SNP [dm3] 2R_16906645_SNP [dm6]	A	T	4.796e^-4	0.954	INTERGENIC
3R	16274765	3R_16274765_SNP [dm3] 3R_20449043_SNP [dm6]	G	A	4.798e^-4	0.954	INTRON Gfrl
3L	13089100	3L_13089100_SNP [dm3] 3L_13096000_SNP [dm6]	T	C	4.798e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	14148581	2R_14148581_SNP [dm3] 2R_18261076_SNP [dm6]	C	T	4.803e^-4	0.954	INTERGENIC
3L	3357823	3L_3357823_SNP [dm3] 3L_3357823_SNP [dm6]	G	A	4.806e^-4	0.954	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	18605151	2L_18605151_DEL [dm3] 2L_18605151_DEL [dm6]	CCCCAG	T	4.812e^-4	0.954	UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3845018	3L_3845018_SNP [dm3] 3L_3845018_SNP [dm6]	T	A	4.814e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7098060	3L_7098060_SNP [dm3] 3L_7104960_SNP [dm6]	T	A	4.815e^-4	0.954	INTRON form3
2L	2079718	2L_2079718_SNP [dm3] 2L_2079718_SNP [dm6]	T	C	4.815e^-4	0.954	UPSTREAM CG12674 INTRON dpr3
3R	9691768	3R_9691768_DEL [dm3] 3R_13866046_DEL [dm6]	TA	T	4.818e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	3867823	3L_3867823_SNP [dm3] 3L_3867823_SNP [dm6]	G	C	4.820e^-4	0.954	INTERGENIC
2R	20366948	2R_20366948_SNP [dm3] 2R_24479425_SNP [dm6]	C	G	4.822e^-4	0.954	INTRON CG13579
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	4.822e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15337447	2L_15337447_SNP [dm3] 2L_15337447_SNP [dm6]	C	A	4.822e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10924650	3L_10924650_SNP [dm3] 3L_10931550_SNP [dm6]	A	T	4.823e^-4	0.954	INTERGENIC
2L	10616034	2L_10616034_SNP [dm3] 2L_10616034_SNP [dm6]	A	C	4.824e^-4	0.954	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	2079588	2L_2079588_SNP [dm3] 2L_2079588_SNP [dm6]	C	A	4.825e^-4	0.954	UPSTREAM CG12674 INTRON dpr3
3L	897596	3L_897596_SNP [dm3] 3L_897596_SNP [dm6]	C	A	4.833e^-4	0.954	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056 INTRON CG34057
3R	25605407	3R_25605407_SNP [dm3] 3R_29779685_SNP [dm6]	A	G	4.843e^-4	0.954	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8474388	2L_8474388_SNP [dm3] 2L_8474388_SNP [dm6]	T	C	4.850e^-4	0.954	INTRON d
2L	20669704	2L_20669704_SNP [dm3] 2L_20669704_SNP [dm6]	T	C	4.850e^-4	0.954	INTRON CG31678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13968089	X_13968089_SNP [dm3] X_14074056_SNP [dm6]	C	T	4.850e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	897020	3L_897020_SNP [dm3] 3L_897020_SNP [dm6]	A	T	4.872e^-4	0.954	UPSTREAM CG34057 INTRON CG34056
3R	25041920	3R_25041920_DEL [dm3] 3R_29216198_DEL [dm6]	AATAC	A	4.878e^-4	0.954	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14148019	2R_14148019_SNP [dm3] 2R_18260514_SNP [dm6]	G	A	4.881e^-4	0.954	INTERGENIC
3L	1692291	3L_1692291_SNP [dm3] 3L_1692291_SNP [dm6]	T	C	4.887e^-4	0.954	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7505893	2L_7505893_SNP [dm3] 2L_7505893_SNP [dm6]	C	G	4.911e^-4	0.954	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2R	14265460	2R_14265460_INS [dm3] 2R_18377955_INS [dm6]	T	ATTCGATGTAGAAA...	4.915e^-4	0.954	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5874300	2R_5874300_SNP [dm3] 2R_9986795_SNP [dm6]	G	A	4.925e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	4.929e^-4	0.954	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7043272	2R_7043272_SNP [dm3] 2R_11155767_SNP [dm6]	A	T	4.938e^-4	0.954	DOWNSTREAM CG13230 INTRON CG13229
3L	3844981	3L_3844981_SNP [dm3] 3L_3844981_SNP [dm6]	A	T	4.943e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	14416642	2L_14416642_SNP [dm3] 2L_14416642_SNP [dm6]	A	C	4.947e^-4	0.954	DOWNSTREAM Pburs INTERGENIC
2L	5913738	2L_5913738_SNP [dm3] 2L_5913738_SNP [dm6]	A	G	4.949e^-4	0.954	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2L	7536029	2L_7536029_SNP [dm3] 2L_7536029_SNP [dm6]	A	G	4.952e^-4	0.954	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2L	7193313	2L_7193313_SNP [dm3] 2L_7193313_SNP [dm6]	G	T	4.952e^-4	0.954	SYNONYMOUS_CODING CG4497
3L	14379016	3L_14379016_SNP [dm3] 3L_14385916_SNP [dm6]	G	T	4.953e^-4	0.954	INTERGENIC
2L	6102446	2L_6102446_SNP [dm3] 2L_6102446_SNP [dm6]	T	A	4.956e^-4	0.954	INTRON stai
3L	2749140	3L_2749140_SNP [dm3] 3L_2749140_SNP [dm6]	T	A	4.956e^-4	0.954	INTRON Mrtf
2L	4918214	2L_4918214_SNP [dm3] 2L_4918214_SNP [dm6]	A	T	4.958e^-4	0.954	INTRON hoe1
2L	4151650	2L_4151650_DEL [dm3] 2L_4151650_DEL [dm6]	AAATTGTTGATGTCTTAAGA...	A	4.962e^-4	0.954	DOWNSTREAM CG2955 INTERGENIC
X	17509770	X_17509770_INS [dm3] X_17615737_INS [dm6]	G	GGGAG	4.967e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12138301	2L_12138301_SNP [dm3] 2L_12138301_SNP [dm6]	C	G	4.970e^-4	0.954	SYNONYMOUS_CODING Gr33a
2R	16498157	2R_16498157_SNP [dm3] 2R_20610652_SNP [dm6]	A	C	4.974e^-4	0.954	INTRON Hil
3R	12250829	3R_12250829_SNP [dm3] 3R_16425107_SNP [dm6]	T	G	4.978e^-4	0.954	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3R	25368418	3R_25368418_SNP [dm3] 3R_29542696_SNP [dm6]	A	C	4.979e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15805594	2L_15805594_SNP [dm3] 2L_15805594_SNP [dm6]	C	T	4.981e^-4	0.954	INTERGENIC
3L	3920147	3L_3920147_SNP [dm3] 3L_3920147_SNP [dm6]	G	A	4.990e^-4	0.954	INTRON Eip63F-1
3R	13310088	3R_13310088_SNP [dm3] 3R_17484366_SNP [dm6]	G	A	5.015e^-4	0.954	SYNONYMOUS_CODING Dscam3
3L	15682081	3L_15682081_SNP [dm3] 3L_15688981_SNP [dm6]	A	T	5.017e^-4	0.954	SYNONYMOUS_CODING CG34451	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6011067	3L_6011067_SNP [dm3] 3L_6017967_SNP [dm6]	A	T	5.020e^-4	0.954	INTRON PVRAP
2L	18031186	2L_18031186_SNP [dm3] 2L_18031186_SNP [dm6]	C	A	5.042e^-4	0.954	INTRON rdo
X	19377707	X_19377707_INS [dm3] X_19483674_INS [dm6]	T	TT	5.044e^-4	0.954	INTRON Nat1
2R	7043253	2R_7043253_SNP [dm3] 2R_11155748_SNP [dm6]	A	T	5.048e^-4	0.954	DOWNSTREAM CG13230 INTRON CG13229
2R	10579746	2R_10579746_SNP [dm3] 2R_14692241_SNP [dm6]	T	C	5.051e^-4	0.954	INTRON mspo
X	20554810	X_20554810_SNP [dm3] X_20683783_SNP [dm6]	G	A	5.054e^-4	0.954	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
X	3450370	X_3450370_SNP [dm3] X_3556337_SNP [dm6]	T	A	5.054e^-4	0.954	INTRON CG32791
2L	12690679	2L_12690679_SNP [dm3] 2L_12690679_SNP [dm6]	A	G	5.059e^-4	0.954	SYNONYMOUS_CODING CG5525	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10976901	3L_10976901_SNP [dm3] 3L_10983801_SNP [dm6]	G	A	5.061e^-4	0.954	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15877109	3L_15877109_SNP [dm3] 3L_15884009_SNP [dm6]	T	C	5.061e^-4	0.954	DOWNSTREAM CR44050 INTRON pHCl
2R	5857411	2R_5857411_SNP [dm3] 2R_9969906_SNP [dm6]	C	T	5.065e^-4	0.954	INTRON Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14489598	2R_14489598_SNP [dm3] 2R_18602093_SNP [dm6]	C	T	5.073e^-4	0.954	INTRON GEFmeso
2L	3489564	2L_3489564_SNP [dm3] 2L_3489564_SNP [dm6]	T	A	5.106e^-4	0.954	INTRON CG15414
2R	11769465	2R_11769465_SNP [dm3] 2R_15881960_SNP [dm6]	C	T	5.122e^-4	0.954	INTRON sli
3L	13727541	3L_13727541_SNP [dm3] 3L_13734441_SNP [dm6]	A	G	5.122e^-4	0.954	INTRON bru-3
3L	18928920	3L_18928920_SNP [dm3] 3L_18935820_SNP [dm6]	G	T	5.132e^-4	0.954	INTRON CG32204
3L	6011069	3L_6011069_SNP [dm3] 3L_6017969_SNP [dm6]	A	G	5.137e^-4	0.954	INTRON PVRAP
2L	21913132	2L_21913132_SNP [dm3] 2L_21913132_SNP [dm6]	G	A	5.148e^-4	0.954	INTERGENIC	transposable element FlyBase
X	6332911	X_6332911_SNP [dm3] X_6438878_SNP [dm6]	G	C	5.149e^-4	0.954	INTRON CG42340
2R	20432609	2R_20432609_DEL [dm3] 2R_24545086_DEL [dm6]	TTGCTGTTGCTGC...	T	5.167e^-4	0.954	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13610026	3R_13610026_SNP [dm3] 3R_17784304_SNP [dm6]	T	G	5.168e^-4	0.954	UPSTREAM CG43102 INTRON CG43102	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6068352	3L_6068352_SNP [dm3] 3L_6075252_SNP [dm6]	C	T	5.170e^-4	0.954	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	3666327	3L_3666327_SNP [dm3] 3L_3666327_SNP [dm6]	C	A	5.176e^-4	0.954	INTERGENIC
3R	4206446	3R_4206446_SNP [dm3] 3R_8380724_SNP [dm6]	C	T	5.178e^-4	0.954	INTRON CG45263
3R	26981967	3R_26981967_SNP [dm3] 3R_31156245_SNP [dm6]	A	T	5.183e^-4	0.954	INTRON Gycbeta100B
X	7433897	X_7433897_SNP [dm3] X_7539864_SNP [dm6]	T	A	5.185e^-4	0.954	INTRON CG32719
3R	26938503	3R_26938503_SNP [dm3] 3R_31112781_SNP [dm6]	G	A	5.189e^-4	0.954	INTERGENIC
3R	16509099	3R_16509099_SNP [dm3] 3R_20683377_SNP [dm6]	C	T	5.199e^-4	0.954	INTERGENIC
3L	6097510	3L_6097510_SNP [dm3] 3L_6104410_SNP [dm6]	A	G	5.209e^-4	0.954	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13447342	3R_13447342_SNP [dm3] 3R_17621620_SNP [dm6]	G	A	5.212e^-4	0.954	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
2R	5310435	2R_5310435_SNP [dm3] 2R_9422930_SNP [dm6]	T	A	5.216e^-4	0.954	INTRON CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10789849	3R_10789849_SNP [dm3] 3R_14964127_SNP [dm6]	T	A	5.217e^-4	0.954	INTERGENIC
2L	16911157	2L_16911157_SNP [dm3] 2L_16911157_SNP [dm6]	C	T	5.217e^-4	0.954	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13870488	X_13870488_SNP [dm3] X_13976455_SNP [dm6]	T	C	5.221e^-4	0.954	INTRON mamo
2L	6205857	2L_6205857_SNP [dm3] 2L_6205857_SNP [dm6]	G	A	5.226e^-4	0.954	INTRON CG34380	TF binding site BDTNP1_TFBS_da
X	16606869	X_16606869_SNP [dm3] X_16712836_SNP [dm6]	C	A	5.237e^-4	0.954	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3547224	X_3547224_SNP [dm3] X_3653191_SNP [dm6]	G	A	5.237e^-4	0.954	INTRON AstA-R1
3L	6524548	3L_6524548_SNP [dm3] 3L_6531448_SNP [dm6]	T	G	5.237e^-4	0.954	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
2L	18303285	2L_18303285_SNP [dm3] 2L_18303285_SNP [dm6]	C	T	5.253e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	12233188	3L_12233188_MNP [dm3] 3L_12240088_MNP [dm6]	CAA	TTT	5.260e^-4	0.954	INTRON app
X	18720198	X_18720198_SNP [dm3] X_18826165_SNP [dm6]	G	A	5.270e^-4	0.954	SYNONYMOUS_CODING CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13620004	2L_13620004_DEL [dm3] 2L_13620004_DEL [dm6]	ACCCTTAAACC...	A	5.277e^-4	0.954	INTRON kuz
2L	224617	2L_224617_SNP [dm3] 2L_224617_SNP [dm6]	T	G	5.280e^-4	0.954	INTRON kis EXON CR44222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2R	10701777	2R_10701777_DEL [dm3] 2R_14814272_DEL [dm6]	TC	A	5.291e^-4	0.954	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	5.296e^-4	0.954	INTERGENIC
2R	7043437	2R_7043437_SNP [dm3] 2R_11155932_SNP [dm6]	A	T	5.296e^-4	0.954	DOWNSTREAM CG13230 INTRON CG13229
2L	16628046	2L_16628046_SNP [dm3] 2L_16628046_SNP [dm6]	T	C	5.299e^-4	0.954	DOWNSTREAM CR44151 INTRON CG42389	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	20200504	X_20200504_SNP [dm3] X_20329477_SNP [dm6]	T	A	5.300e^-4	0.954	START_GAINED CG1504 UTR_5_PRIME CG1504 DOWNSTREAM CG1631 INTRON CG1504	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5280092	3L_5280092_SNP [dm3] 3L_5286992_SNP [dm6]	G	T	5.301e^-4	0.954	INTERGENIC
2R	19719293	2R_19719293_SNP [dm3] 2R_23831770_SNP [dm6]	C	G	5.303e^-4	0.954	INTRON CG5549
X	12803998	X_12803998_SNP [dm3] X_12909965_SNP [dm6]	T	A	5.303e^-4	0.954	UTR_5_PRIME CG4645 UPSTREAM CG4645 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15475219	2L_15475219_SNP [dm3] 2L_15475219_SNP [dm6]	T	C	5.308e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1505343	2L_1505343_SNP [dm3] 2L_1505343_SNP [dm6]	C	T	5.314e^-4	0.954	INTERGENIC
2L	7510472	2L_7510472_SNP [dm3] 2L_7510472_SNP [dm6]	T	C	5.316e^-4	0.954	INTRON RapGAP1
3L	5098408	3L_5098408_INS [dm3] 3L_5098408_INS [dm6]	C	CC	5.316e^-4	0.954	EXON CR34047
2L	11828886	2L_11828886_SNP [dm3] 2L_11828886_SNP [dm6]	G	A	5.321e^-4	0.954	SYNONYMOUS_CODING esc INTRON Pde1c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4371897	3R_4371897_SNP [dm3] 3R_8546175_SNP [dm6]	C	T	5.323e^-4	0.954	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
2R	14075701	2R_14075701_SNP [dm3] 2R_18188196_SNP [dm6]	G	C	5.332e^-4	0.954	NON_SYNONYMOUS_CODING CG14499 UPSTREAM CG14500 INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25906671	3R_25906671_SNP [dm3] 3R_30080949_SNP [dm6]	C	A	5.336e^-4	0.954	INTRON sima
3R	9560792	3R_9560792_SNP [dm3] 3R_13735070_SNP [dm6]	A	T	5.337e^-4	0.954	UPSTREAM CG34383 INTRON CG34383
2L	11397550	2L_11397550_SNP [dm3] 2L_11397550_SNP [dm6]	C	T	5.338e^-4	0.954	INTERGENIC	regulatory region REDfly_CRMs
3R	1292907	3R_1292907_SNP [dm3] 3R_5467185_SNP [dm6]	A	G	5.339e^-4	0.954	UPSTREAM CG12162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3576597	2R_3576597_SNP [dm3] 2R_7689092_SNP [dm6]	G	T	5.339e^-4	0.954	INTRON CG1399
3L	3142199	3L_3142199_SNP [dm3] 3L_3142199_SNP [dm6]	C	A	5.343e^-4	0.954	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11744740	3L_11744740_SNP [dm3] 3L_11751640_SNP [dm6]	T	C	5.347e^-4	0.954	SYNONYMOUS_CODING Gr68a INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8180029	2R_8180029_SNP [dm3] 2R_12292524_SNP [dm6]	G	A	5.350e^-4	0.954	INTRON CG42700
3R	15777084	3R_15777084_SNP [dm3] 3R_19951362_SNP [dm6]	A	T	5.353e^-4	0.954	INTRON Hs6st
2R	12493874	2R_12493874_SNP [dm3] 2R_16606369_SNP [dm6]	G	A	5.353e^-4	0.954	INTERGENIC
2R	16699373	2R_16699373_SNP [dm3] 2R_20811868_SNP [dm6]	G	T	5.364e^-4	0.954	INTERGENIC
3R	15664478	3R_15664478_SNP [dm3] 3R_19838756_SNP [dm6]	T	C	5.364e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	19874183	3R_19874183_SNP [dm3] 3R_24048461_SNP [dm6]	T	A	5.365e^-4	0.954	UPSTREAM Rox8 DOWNSTREAM Atg6 INTRON CG5986	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16504689	3R_16504689_SNP [dm3] 3R_20678967_SNP [dm6]	A	C	5.368e^-4	0.954	EXON CR43452
3R	15674148	3R_15674148_SNP [dm3] 3R_19848426_SNP [dm6]	T	C	5.375e^-4	0.954	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17773300	3R_17773300_SNP [dm3] 3R_21947578_SNP [dm6]	G	T	5.397e^-4	0.954	INTERGENIC
3R	22278206	3R_22278206_SNP [dm3] 3R_26452484_SNP [dm6]	G	C	5.404e^-4	0.954	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
2L	3514189	2L_3514189_SNP [dm3] 2L_3514189_SNP [dm6]	G	A	5.407e^-4	0.954	SYNONYMOUS_CODING CG33123 UPSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14678071	3R_14678071_SNP [dm3] 3R_18852349_SNP [dm6]	G	T	5.412e^-4	0.954	UPSTREAM CG31226 INTERGENIC
X	6332899	X_6332899_SNP [dm3] X_6438866_SNP [dm6]	C	T	5.418e^-4	0.954	INTRON CG42340
3R	14149429	3R_14149429_SNP [dm3] 3R_18323707_SNP [dm6]	C	T	5.419e^-4	0.954	INTRON CG31235
2R	9956244	2R_9956244_INS [dm3] 2R_14068739_INS [dm6]	T	TT	5.419e^-4	0.954	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13371913	3L_13371913_SNP [dm3] 3L_13378813_SNP [dm6]	A	G	5.420e^-4	0.954	SYNONYMOUS_CODING SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8166506	X_8166506_SNP [dm3] X_8272473_SNP [dm6]	C	T	5.427e^-4	0.954	UTR_3_PRIME CG15343 UPSTREAM CG1636 DOWNSTREAM CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	20417951	2L_20417951_SNP [dm3] 2L_20417951_SNP [dm6]	A	T	5.444e^-4	0.954	UPSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	2699591	3L_2699591_SNP [dm3] 3L_2699591_SNP [dm6]	C	T	5.446e^-4	0.954	INTRON Fife
2L	13931942	2L_13931942_SNP [dm3] 2L_13931942_SNP [dm6]	T	A	5.447e^-4	0.954	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	13029573	3R_13029573_SNP [dm3] 3R_17203851_SNP [dm6]	G	A	5.451e^-4	0.954	INTERGENIC
3L	17564029	3L_17564029_SNP [dm3] 3L_17570929_SNP [dm6]	C	T	5.452e^-4	0.954	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6575355	2R_6575355_SNP [dm3] 2R_10687850_SNP [dm6]	C	T	5.460e^-4	0.954	INTRON stan
X	8638297	X_8638297_SNP [dm3] X_8744264_SNP [dm6]	T	A	5.468e^-4	0.954	INTERGENIC
3R	16515719	3R_16515719_SNP [dm3] 3R_20689997_SNP [dm6]	A	G	5.479e^-4	0.954	NON_SYNONYMOUS_CODING Oamb UTR_3_PRIME Oamb	TF binding site mE1_TFBS_chinmo
2L	4151736	2L_4151736_SNP [dm3] 2L_4151736_SNP [dm6]	T	A	5.486e^-4	0.954	DOWNSTREAM CG2955 INTERGENIC
2R	400405	2R_400405_SNP [dm3] 2R_4512900_SNP [dm6]	A	T	5.491e^-4	0.954	INTERGENIC	transposable element FlyBase
3L	8629791	3L_8629791_SNP [dm3] 3L_8636691_SNP [dm6]	T	C	5.495e^-4	0.954	UTR_3_PRIME Zasp66 INTRON Zasp66
2R	16193243	2R_16193243_SNP [dm3] 2R_20305738_SNP [dm6]	C	G	5.497e^-4	0.954	INTRON CG11200
X	8360969	X_8360969_SNP [dm3] X_8466936_SNP [dm6]	A	G	5.504e^-4	0.954	UPSTREAM CG33223 DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
3L	15848312	3L_15848312_SNP [dm3] 3L_15855212_SNP [dm6]	T	G	5.504e^-4	0.954	INTRON pHCl
X	4998175	X_4998175_SNP [dm3] X_5104142_SNP [dm6]	A	T	5.506e^-4	0.954	INTRON rg & 1 other
3R	7500593	3R_7500593_SNP [dm3] 3R_11674871_SNP [dm6]	C	T	5.508e^-4	0.954	UTR_3_PRIME CG14715 DOWNSTREAM CG18476 & 1 other	TF binding site mE1_TFBS_sens
X	8294668	X_8294668_SNP [dm3] X_8400635_SNP [dm6]	G	T	5.517e^-4	0.954	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7043268	2R_7043268_MNP [dm3] 2R_11155763_MNP [dm6]	CCT	ATC	5.520e^-4	0.954	DOWNSTREAM CG13230 INTRON CG13229
2R	16086361	2R_16086361_SNP [dm3] 2R_20198856_SNP [dm6]	C	A	5.526e^-4	0.954	INTERGENIC
2L	3862323	2L_3862323_SNP [dm3] 2L_3862323_SNP [dm6]	T	A	5.527e^-4	0.954	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	4098670	2L_4098670_SNP [dm3] 2L_4098670_SNP [dm6]	G	A	5.530e^-4	0.954	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7906818	3L_7906818_SNP [dm3] 3L_7913718_SNP [dm6]	T	A	5.531e^-4	0.954	UTR_3_PRIME CG8281 & 1 other	TF binding site mE1_TFBS_chinmo
3L	2750037	3L_2750037_SNP [dm3] 3L_2750037_SNP [dm6]	A	T	5.532e^-4	0.954	INTRON Mrtf
3L	6299534	3L_6299534_DEL [dm3] 3L_6306434_DEL [dm6]	CG	T	5.539e^-4	0.954	UPSTREAM CR45114 DOWNSTREAM CR45113 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26870543	3R_26870543_SNP [dm3] 3R_31044821_SNP [dm6]	A	T	5.549e^-4	0.954	INTRON CanA1 & 1 other
3R	12653069	3R_12653069_SNP [dm3] 3R_16827347_SNP [dm6]	G	A	5.552e^-4	0.954	SYNONYMOUS_CODING abd-A UTR_5_PRIME abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7424494	2R_7424494_SNP [dm3] 2R_11536989_SNP [dm6]	A	C	5.581e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7043237	2R_7043237_SNP [dm3] 2R_11155732_SNP [dm6]	A	C	5.586e^-4	0.954	DOWNSTREAM CG13230 INTRON CG13229
2L	7500401	2L_7500401_SNP [dm3] 2L_7500401_SNP [dm6]	A	G	5.602e^-4	0.954	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3495904	3L_3495904_SNP [dm3] 3L_3495904_SNP [dm6]	C	T	5.603e^-4	0.954	INTRON CG42324
2L	13184950	2L_13184950_SNP [dm3] 2L_13184950_SNP [dm6]	T	C	5.608e^-4	0.954	UTR_3_PRIME CG16974 DOWNSTREAM CG5458	TF binding site mE1_TFBS_cad
2R	7645313	2R_7645313_SNP [dm3] 2R_11757808_SNP [dm6]	C	T	5.611e^-4	0.954	START_GAINED ths UTR_5_PRIME ths	TF binding site mE1_TFBS_Trl
2R	9766770	2R_9766770_SNP [dm3] 2R_13879265_SNP [dm6]	G	A	5.623e^-4	0.954	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17359679	2R_17359679_SNP [dm3] 2R_21472174_SNP [dm6]	C	G	5.632e^-4	0.954	INTRON Sdc
X	10886675	X_10886675_SNP [dm3] X_10992642_SNP [dm6]	C	T	5.632e^-4	0.954	INTRON CG42339
3L	15662435	3L_15662435_SNP [dm3] 3L_15669335_SNP [dm6]	A	T	5.635e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1505322	2L_1505322_SNP [dm3] 2L_1505322_SNP [dm6]	C	T	5.639e^-4	0.954	INTERGENIC
2L	132312	2L_132312_SNP [dm3] 2L_132312_SNP [dm6]	T	G	5.639e^-4	0.954	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3866324	3L_3866324_SNP [dm3] 3L_3866324_SNP [dm6]	C	T	5.647e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12630604	3R_12630604_SNP [dm3] 3R_16804882_SNP [dm6]	C	T	5.649e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19828103	2R_19828103_SNP [dm3] 2R_23940580_SNP [dm6]	T	G	5.651e^-4	0.954	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1786334	3R_1786334_INS [dm3] 3R_5960612_INS [dm6]	G	GGTAACCACATCGTAAGAAA...	5.656e^-4	0.954	INTRON CG11373
2L	12498132	2L_12498132_SNP [dm3] 2L_12498132_SNP [dm6]	A	C	5.657e^-4	0.954	UPSTREAM t-cup INTRON bun
X	12203215	X_12203215_SNP [dm3] X_12309182_SNP [dm6]	T	A	5.657e^-4	0.954	INTRON Ten-a
3L	6012754	3L_6012754_SNP [dm3] 3L_6019654_SNP [dm6]	C	T	5.665e^-4	0.954	SYNONYMOUS_CODING PVRAP
2R	2722069	2R_2722069_SNP [dm3] 2R_6834564_SNP [dm6]	G	A	5.674e^-4	0.954	NON_SYNONYMOUS_CODING CG15236 DOWNSTREAM mir-4976	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	2722081	2R_2722081_SNP [dm3] 2R_6834576_SNP [dm6]	G	C	5.674e^-4	0.954	NON_SYNONYMOUS_CODING CG15236 DOWNSTREAM mir-4976	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11001223	2L_11001223_DEL [dm3] 2L_11001223_DEL [dm6]	TGGA	T	5.679e^-4	0.954	UPSTREAM lectin-33A & 1 other INTRON aub
3L	13726526	3L_13726526_SNP [dm3] 3L_13733426_SNP [dm6]	C	T	5.680e^-4	0.954	INTRON bru-3
3L	5769021	3L_5769021_SNP [dm3] 3L_5775921_SNP [dm6]	C	T	5.689e^-4	0.954	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	5.692e^-4	0.954	INTRON Stlk	transposable element FlyBase
2L	1284258	2L_1284258_SNP [dm3] 2L_1284258_SNP [dm6]	G	A	5.693e^-4	0.954	INTRON robo3
2R	4953621	2R_4953621_SNP [dm3] 2R_9066116_SNP [dm6]	A	T	5.693e^-4	0.954	INTRON ana	regulatory region REDfly_CRMs
3R	14677017	3R_14677017_SNP [dm3] 3R_18851295_SNP [dm6]	T	A	5.696e^-4	0.954	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	14692266	2L_14692266_SNP [dm3] 2L_14692266_SNP [dm6]	C	T	5.701e^-4	0.954	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	10815846	2L_10815846_SNP [dm3] 2L_10815846_SNP [dm6]	A	G	5.713e^-4	0.954	INTRON Nos
3R	14331644	3R_14331644_SNP [dm3] 3R_18505922_SNP [dm6]	G	C	5.714e^-4	0.954	INTRON fru
2R	13140227	2R_13140227_DEL [dm3] 2R_17252722_DEL [dm6]	TT	T	5.716e^-4	0.954	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	18263144	2L_18263144_SNP [dm3] 2L_18263144_SNP [dm6]	C	A	5.719e^-4	0.954	UPSTREAM CR44901 INTRON CG42750
X	10886474	X_10886474_SNP [dm3] X_10992441_SNP [dm6]	C	A	5.730e^-4	0.954	INTRON CG42339
2R	14049570	2R_14049570_SNP [dm3] 2R_18162065_SNP [dm6]	C	T	5.732e^-4	0.954	SYNONYMOUS_CODING CG10915
2R	16384239	2R_16384239_SNP [dm3] 2R_20496734_SNP [dm6]	T	C	5.734e^-4	0.954	INTERGENIC
X	16558366	X_16558366_SNP [dm3] X_16664333_SNP [dm6]	G	C	5.738e^-4	0.954	SYNONYMOUS_CODING CG15865 INTRON r
2L	18269237	2L_18269237_SNP [dm3] 2L_18269237_SNP [dm6]	C	T	5.742e^-4	0.954	INTRON CG42750
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	5.745e^-4	0.954	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	15998100	2L_15998100_INS [dm3] 2L_15998100_INS [dm6]	T	TA	5.747e^-4	0.954	INTERGENIC
X	17233674	X_17233674_SNP [dm3] X_17339641_SNP [dm6]	T	G	5.757e^-4	0.954	INTERGENIC
3R	8366144	3R_8366144_INS [dm3] 3R_12540422_INS [dm6]	G	AAGACGT	5.764e^-4	0.954	INTRON Octbeta3R
3R	8366146	3R_8366146_DEL [dm3] 3R_12540424_DEL [dm6]	CTTTAT	C	5.764e^-4	0.954	INTRON Octbeta3R
2R	6012741	2R_6012741_SNP [dm3] 2R_10125236_SNP [dm6]	A	G	5.776e^-4	0.954	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
4	1045090	4_1045090_MNP [dm3] 4_1024464_MNP [dm6]	AGG	GCA	5.776e^-4	0.954	INTRON PlexA	transposable element FlyBase

Missing results

By genomic position
Variant impact
Gene name

Total_TEs phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results