DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.826e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.07275

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2213 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9476276	2R_9476276_SNP [dm3] 2R_13588771_SNP [dm6]	G	C	6.591e^-7	0.553	INTRON CG6191 & 1 other
2L	2488138	2L_2488138_SNP [dm3] 2L_2488138_SNP [dm6]	T	A	7.999e^-7	0.553	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
X	18466485	X_18466485_SNP [dm3] X_18572452_SNP [dm6]	G	A	1.078e^-6	0.553	UTR_3_PRIME Bx DOWNSTREAM Bx
2L	2488114	2L_2488114_SNP [dm3] 2L_2488114_SNP [dm6]	T	A	1.189e^-6	0.553	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	16553341	3L_16553341_SNP [dm3] 3L_16560241_SNP [dm6]	G	T	1.586e^-6	0.553	INTERGENIC
2L	7490336	2L_7490336_SNP [dm3] 2L_7490336_SNP [dm6]	C	T	2.187e^-6	0.553	INTRON Ziz
2R	9459482	2R_9459482_SNP [dm3] 2R_13571977_SNP [dm6]	A	G	2.283e^-6	0.553	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	6880579	X_6880579_SNP [dm3] X_6986546_SNP [dm6]	G	T	2.550e^-6	0.553	UTR_5_PRIME bou UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	3.035e^-6	0.553	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10764650	3R_10764650_SNP [dm3] 3R_14938928_SNP [dm6]	A	G	3.077e^-6	0.553	INTERGENIC
2R	18233644	2R_18233644_SNP [dm3] 2R_22346139_SNP [dm6]	C	T	3.244e^-6	0.553	NON_SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
2L	13745473	2L_13745473_SNP [dm3] 2L_13745473_SNP [dm6]	C	G	4.685e^-6	0.653	INTERGENIC
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	5.135e^-6	0.653	DOWNSTREAM CG6974 & 1 other INTERGENIC
3L	15899276	3L_15899276_SNP [dm3] 3L_15906176_SNP [dm6]	C	G	5.989e^-6	0.653	SYNONYMOUS_CODING sff
3L	10801737	3L_10801737_SNP [dm3] 3L_10808637_SNP [dm6]	G	A	6.096e^-6	0.653	INTERGENIC
3L	15899108	3L_15899108_SNP [dm3] 3L_15906008_SNP [dm6]	T	C	6.703e^-6	0.653	SYNONYMOUS_CODING sff
2L	2488122	2L_2488122_SNP [dm3] 2L_2488122_SNP [dm6]	T	A	6.739e^-6	0.653	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	9340497	3L_9340497_INS [dm3] 3L_9347397_INS [dm6]	CA	ATTT	6.822e^-6	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	2488108	2L_2488108_SNP [dm3] 2L_2488108_SNP [dm6]	T	G	6.833e^-6	0.653	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	7.331e^-6	0.653	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
2L	2488106	2L_2488106_SNP [dm3] 2L_2488106_SNP [dm6]	G	A	7.974e^-6	0.653	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	9340486	3L_9340486_SNP [dm3] 3L_9347386_SNP [dm6]	A	G	8.710e^-6	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	20146604	2L_20146604_SNP [dm3] 2L_20146604_SNP [dm6]	G	A	8.893e^-6	0.653	INTERGENIC
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	9.167e^-6	0.653	UPSTREAM CG43244 INTERGENIC
3L	9340493	3L_9340493_SNP [dm3] 3L_9347393_SNP [dm6]	C	A	9.208e^-6	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	5943563	2L_5943563_SNP [dm3] 2L_5943563_SNP [dm6]	A	G	9.763e^-6	0.653	UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	1.028e^-5	0.653	INTRON jnj
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	1.033e^-5	0.653	INTRON jnj
3L	9340505	3L_9340505_SNP [dm3] 3L_9347405_SNP [dm6]	T	C	1.064e^-5	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	2488081	2L_2488081_SNP [dm3] 2L_2488081_SNP [dm6]	A	T	1.087e^-5	0.653	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	1.145e^-5	0.653	INTRON sff
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	1.188e^-5	0.653	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	9340483	3L_9340483_SNP [dm3] 3L_9347383_SNP [dm6]	T	C	1.212e^-5	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9340464	3L_9340464_SNP [dm3] 3L_9347364_SNP [dm6]	C	T	1.264e^-5	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9340466	3L_9340466_DEL [dm3] 3L_9347366_DEL [dm6]	TT	T	1.264e^-5	0.653	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	21767823	3L_21767823_SNP [dm3] 3L_21774723_SNP [dm6]	T	A	1.281e^-5	0.653	UPSTREAM CG42552 INTRON CG42689
2L	21927458	2L_21927458_SNP [dm3] 2L_21927458_SNP [dm6]	T	C	1.288e^-5	0.653	INTERGENIC	transposable element FlyBase
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	1.404e^-5	0.655	INTERGENIC
2L	5943559	2L_5943559_DEL [dm3] 2L_5943559_DEL [dm6]	TAG	A	1.435e^-5	0.655	UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	1.472e^-5	0.655	INTERGENIC
2L	5943728	2L_5943728_SNP [dm3] 2L_5943728_SNP [dm6]	C	A	1.479e^-5	0.655	UTR_5_PRIME Gpdh UPSTREAM Gpdh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2488072	2L_2488072_INS [dm3] 2L_2488072_INS [dm6]	T	TCTT	1.502e^-5	0.655	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	1.503e^-5	0.655	UPSTREAM CG43244 INTERGENIC
3R	15755513	3R_15755513_SNP [dm3] 3R_19929791_SNP [dm6]	A	G	1.606e^-5	0.684	UTR_3_PRIME Hs6st	TF binding site BDTNP1_TFBS_dl
3L	9339346	3L_9339346_DEL [dm3] 3L_9346246_DEL [dm6]	GTC	AA	1.727e^-5	0.707	UTR_3_PRIME PGRP-LC INTRON PGRP-LC
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.753e^-5	0.707	NON_SYNONYMOUS_CODING jnj
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	1.790e^-5	0.707	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3L	9340575	3L_9340575_SNP [dm3] 3L_9347475_SNP [dm6]	T	C	1.809e^-5	0.707	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	13580403	3R_13580403_INS [dm3] 3R_17754681_INS [dm6]	G	GAG	1.900e^-5	0.713	INTRON TyrR
X	9107596	X_9107596_SNP [dm3] X_9213563_SNP [dm6]	T	G	1.932e^-5	0.713	INTERGENIC
2L	7536029	2L_7536029_SNP [dm3] 2L_7536029_SNP [dm6]	A	G	1.982e^-5	0.713	INTRON RapGAP1	TF binding site mE1_TFBS_cad
3R	20016930	3R_20016930_SNP [dm3] 3R_24191208_SNP [dm6]	T	A	2.002e^-5	0.713	SYNONYMOUS_CODING jnj
2R	7499421	2R_7499421_INS [dm3] 2R_11611916_INS [dm6]	G	GG	2.017e^-5	0.713	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	9340534	3L_9340534_INS [dm3] 3L_9347434_INS [dm6]	A	ATTGTA	2.151e^-5	0.731	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	9251317	2R_9251317_SNP [dm3] 2R_13363812_SNP [dm6]	G	A	2.171e^-5	0.731	UPSTREAM CR45312 INTERGENIC
3R	20017195	3R_20017195_SNP [dm3] 3R_24191473_SNP [dm6]	T	C	2.184e^-5	0.731	NON_SYNONYMOUS_CODING jnj
3L	16529565	3L_16529565_SNP [dm3] 3L_16536465_SNP [dm6]	G	C	2.522e^-5	0.771	INTRON CG43373
3L	9340509	3L_9340509_INS [dm3] 3L_9347409_INS [dm6]	T	CACATACACATATTAATTGA...	2.540e^-5	0.771	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	2292874	3L_2292874_SNP [dm3] 3L_2292874_SNP [dm6]	A	G	2.609e^-5	0.771	INTRON MsR2
3L	10801819	3L_10801819_SNP [dm3] 3L_10808719_SNP [dm6]	A	T	2.615e^-5	0.771	INTERGENIC
2L	855323	2L_855323_SNP [dm3] 2L_855323_SNP [dm6]	G	A	2.615e^-5	0.771	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	2.625e^-5	0.771	UPSTREAM CG43244 INTERGENIC
2R	5797495	2R_5797495_SNP [dm3] 2R_9909990_SNP [dm6]	G	A	2.637e^-5	0.771	SYNONYMOUS_CODING FMRFa UPSTREAM Etf-QO	TF binding site mE1_TFBS_chinmo
X	9107598	X_9107598_SNP [dm3] X_9213565_SNP [dm6]	A	T	2.689e^-5	0.771	INTERGENIC
2R	18143041	2R_18143041_SNP [dm3] 2R_22255536_SNP [dm6]	T	G	2.730e^-5	0.771	INTRON dve	TF binding site mE1_TFBS_sens
2R	18230934	2R_18230934_SNP [dm3] 2R_22343429_SNP [dm6]	C	T	2.778e^-5	0.771	INTRON Liprin-gamma
X	12079989	X_12079989_SNP [dm3] X_12185956_SNP [dm6]	C	G	2.817e^-5	0.771	INTRON Ten-a
3L	9336947	3L_9336947_SNP [dm3] 3L_9343847_SNP [dm6]	C	T	2.826e^-5	0.771	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	506087	3L_506087_SNP [dm3] 3L_506087_SNP [dm6]	G	A	2.837e^-5	0.771	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	21913750	2L_21913750_SNP [dm3] 2L_21913750_SNP [dm6]	A	T	3.001e^-5	0.798	DOWNSTREAM CG31600 INTERGENIC
X	9246963	X_9246963_SNP [dm3] X_9352930_SNP [dm6]	A	G	3.024e^-5	0.798	INTRON CG34449
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	3.064e^-5	0.798	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5796778	2R_5796778_SNP [dm3] 2R_9909273_SNP [dm6]	C	T	3.131e^-5	0.804	SYNONYMOUS_CODING FMRFa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20017110	3R_20017110_SNP [dm3] 3R_24191388_SNP [dm6]	C	T	3.232e^-5	0.809	NON_SYNONYMOUS_CODING jnj
3L	10803166	3L_10803166_SNP [dm3] 3L_10810066_SNP [dm6]	A	T	3.333e^-5	0.809	INTERGENIC
X	12086255	X_12086255_INS [dm3] X_12192222_INS [dm6]	G	GAG	3.360e^-5	0.809	INTRON Ten-a
2R	20374772	2R_20374772_SNP [dm3] 2R_24487249_SNP [dm6]	T	C	3.377e^-5	0.809	INTRON CG13579	TF binding site mE1_TFBS_cad
3R	25906671	3R_25906671_SNP [dm3] 3R_30080949_SNP [dm6]	C	A	3.459e^-5	0.809	INTRON sima
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	3.489e^-5	0.809	INTRON CG17018	transposable element FlyBase
3L	9338028	3L_9338028_SNP [dm3] 3L_9344928_SNP [dm6]	C	A	3.509e^-5	0.809	SYNONYMOUS_CODING PGRP-LC
X	14819025	X_14819025_INS [dm3] X_14924992_INS [dm6]	T	TCT	3.643e^-5	0.809	UPSTREAM Flo2 INTRON Flo2
3L	1325184	3L_1325184_SNP [dm3] 3L_1325184_SNP [dm6]	G	A	3.646e^-5	0.809	UTR_5_PRIME Myo61F UPSTREAM CR45166 INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18793607	3R_18793607_DEL [dm3] 3R_22967885_DEL [dm6]	ATTCGGCGGTAATTAGA...	A	3.739e^-5	0.809	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10199285	3R_10199285_SNP [dm3] 3R_14373563_SNP [dm6]	G	A	3.898e^-5	0.809	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6772294	3L_6772294_SNP [dm3] 3L_6779194_SNP [dm6]	C	G	3.946e^-5	0.809	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
X	14666160	X_14666160_SNP [dm3] X_14772127_SNP [dm6]	G	A	3.992e^-5	0.809	INTERGENIC
X	16813089	X_16813089_SNP [dm3] X_16919056_SNP [dm6]	C	T	3.997e^-5	0.809	INTRON CG4928
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	4.069e^-5	0.809	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	13366747	3L_13366747_SNP [dm3] 3L_13373647_SNP [dm6]	T	C	4.109e^-5	0.809	INTERGENIC
2L	7490357	2L_7490357_SNP [dm3] 2L_7490357_SNP [dm6]	A	G	4.134e^-5	0.809	INTRON Ziz
2L	7492255	2L_7492255_SNP [dm3] 2L_7492255_SNP [dm6]	A	T	4.227e^-5	0.809	INTRON Ziz	TF binding site BDTNP1_TFBS_dl
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	4.255e^-5	0.809	DOWNSTREAM CR44315 INTERGENIC
2L	10814349	2L_10814349_SNP [dm3] 2L_10814349_SNP [dm6]	A	G	4.359e^-5	0.809	INTRON Nos
2L	7548086	2L_7548086_SNP [dm3] 2L_7548086_SNP [dm6]	A	G	4.376e^-5	0.809	INTRON RapGAP1
X	908567	X_908567_SNP [dm3] X_1014534_SNP [dm6]	C	G	4.392e^-5	0.809	UTR_3_PRIME CG11638 INTRON su_w[a]_
X	14442170	X_14442170_SNP [dm3] X_14548137_SNP [dm6]	A	C	4.428e^-5	0.809	INTERGENIC
2R	18145505	2R_18145505_DEL [dm3] 2R_22258000_DEL [dm6]	GG	G	4.441e^-5	0.809	INTRON dve	TF binding site mE1_TFBS_chinmo
2L	15363185	2L_15363185_SNP [dm3] 2L_15363185_SNP [dm6]	G	T	4.579e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	4.672e^-5	0.809	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
X	18466521	X_18466521_SNP [dm3] X_18572488_SNP [dm6]	C	T	4.777e^-5	0.809	UTR_3_PRIME Bx DOWNSTREAM Bx
2R	15671753	2R_15671753_SNP [dm3] 2R_19784248_SNP [dm6]	C	T	4.816e^-5	0.809	UPSTREAM CR45231 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	21699598	3L_21699598_SNP [dm3] 3L_21706498_SNP [dm6]	G	A	4.839e^-5	0.809	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	9340711	3L_9340711_SNP [dm3] 3L_9347611_SNP [dm6]	A	T	4.855e^-5	0.809	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	13091520	3L_13091520_SNP [dm3] 3L_13098420_SNP [dm6]	A	T	4.971e^-5	0.809	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	13834005	2R_13834005_SNP [dm3] 2R_17946500_SNP [dm6]	G	A	5.053e^-5	0.809	INTERGENIC
3L	8615750	3L_8615750_SNP [dm3] 3L_8622650_SNP [dm6]	T	C	5.061e^-5	0.809	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_sens
2L	1324939	2L_1324939_SNP [dm3] 2L_1324939_SNP [dm6]	A	G	5.091e^-5	0.809	INTERGENIC
2R	13630036	2R_13630036_SNP [dm3] 2R_17742531_SNP [dm6]	G	A	5.159e^-5	0.809	SYNONYMOUS_CODING CG4996
3L	16068321	3L_16068321_SNP [dm3] 3L_16075221_SNP [dm6]	A	G	5.202e^-5	0.809	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
3R	12631031	3R_12631031_SNP [dm3] 3R_16805309_SNP [dm6]	T	C	5.379e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10883880	X_10883880_SNP [dm3] X_10989847_SNP [dm6]	A	C	5.445e^-5	0.809	INTRON CG42339
2L	7548113	2L_7548113_DEL [dm3] 2L_7548113_DEL [dm6]	CAAGA	C	5.490e^-5	0.809	INTRON RapGAP1
3R	11581023	3R_11581023_SNP [dm3] 3R_15755301_SNP [dm6]	C	T	5.587e^-5	0.809	INTERGENIC
2L	7490346	2L_7490346_SNP [dm3] 2L_7490346_SNP [dm6]	C	T	5.592e^-5	0.809	INTRON Ziz
2R	14642843	2R_14642843_SNP [dm3] 2R_18755338_SNP [dm6]	A	G	5.623e^-5	0.809	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Hs3st-A
2L	14207320	2L_14207320_SNP [dm3] 2L_14207320_SNP [dm6]	G	A	5.674e^-5	0.809	INTRON Dyrk2
X	14646736	X_14646736_SNP [dm3] X_14752703_SNP [dm6]	T	C	5.772e^-5	0.809	INTERGENIC
2L	12499318	2L_12499318_SNP [dm3] 2L_12499318_SNP [dm6]	A	T	5.819e^-5	0.809	INTRON bun
2R	19482135	2R_19482135_SNP [dm3] 2R_23594612_SNP [dm6]	G	C	5.828e^-5	0.809	INTRON apt	TF binding site mE1_TFBS_sens
3R	22024816	3R_22024816_SNP [dm3] 3R_26199094_SNP [dm6]	A	G	5.845e^-5	0.809	INTRON CR44320
3R	23480872	3R_23480872_SNP [dm3] 3R_27655150_SNP [dm6]	C	T	5.927e^-5	0.809	INTRON tau
3R	18094751	3R_18094751_SNP [dm3] 3R_22269029_SNP [dm6]	G	A	5.948e^-5	0.809	INTRON SKIP
3L	10801824	3L_10801824_SNP [dm3] 3L_10808724_SNP [dm6]	C	T	5.957e^-5	0.809	INTERGENIC
3L	10040068	3L_10040068_SNP [dm3] 3L_10046968_SNP [dm6]	C	G	6.046e^-5	0.809	INTRON dpr6
3L	9340709	3L_9340709_SNP [dm3] 3L_9347609_SNP [dm6]	A	C	6.058e^-5	0.809	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	10230591	3L_10230591_SNP [dm3] 3L_10237491_SNP [dm6]	G	A	6.091e^-5	0.809	DOWNSTREAM CR44542 INTERGENIC
2R	5795920	2R_5795920_SNP [dm3] 2R_9908415_SNP [dm6]	G	A	6.165e^-5	0.809	INTRON FMRFa
3R	25907851	3R_25907851_SNP [dm3] 3R_30082129_SNP [dm6]	C	A	6.166e^-5	0.809	INTRON sima
3L	3572735	3L_3572735_INS [dm3] 3L_3572735_INS [dm6]	A	CACAGTTC	6.167e^-5	0.809	INTRON Eip63E
2L	15352006	2L_15352006_DEL [dm3] 2L_15352006_DEL [dm6]	GAAGAATTTTGATTTAAGAG...	G	6.212e^-5	0.809	INTERGENIC
3R	10554173	3R_10554173_INS [dm3] 3R_14728451_INS [dm6]	A	AGTGC	6.228e^-5	0.809	INTRON CG7530
3R	12630657	3R_12630657_SNP [dm3] 3R_16804935_SNP [dm6]	C	T	6.243e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9336986	3L_9336986_SNP [dm3] 3L_9343886_SNP [dm6]	A	G	6.268e^-5	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
X	15327425	X_15327425_SNP [dm3] X_15433392_SNP [dm6]	A	T	6.281e^-5	0.809	INTRON Cngl	transposable element FlyBase
2L	6539113	2L_6539113_SNP [dm3] 2L_6539113_SNP [dm6]	A	C	6.332e^-5	0.809	INTRON eya
3R	2727560	3R_2727560_SNP [dm3] 3R_6901838_SNP [dm6]	C	A	6.346e^-5	0.809	INTRON Antp
2L	16401138	2L_16401138_SNP [dm3] 2L_16401138_SNP [dm6]	G	A	6.452e^-5	0.809	INTRON CG5888
3R	10904047	3R_10904047_DEL [dm3] 3R_15078325_DEL [dm6]	GGTAG	G	6.547e^-5	0.809	DOWNSTREAM CG6974 & 1 other INTERGENIC
2L	7563189	2L_7563189_DEL [dm3] 2L_7563189_DEL [dm6]	AT	A	6.590e^-5	0.809	INTRON RapGAP1
2R	9249164	2R_9249164_SNP [dm3] 2R_13361659_SNP [dm6]	A	C	6.644e^-5	0.809	DOWNSTREAM CR45312 INTERGENIC
2L	14073084	2L_14073084_SNP [dm3] 2L_14073084_SNP [dm6]	C	T	6.671e^-5	0.809	INTRON nAChRalpha5
X	14818428	X_14818428_SNP [dm3] X_14924395_SNP [dm6]	T	C	6.722e^-5	0.809	SYNONYMOUS_CODING Flo2 UPSTREAM CG9503
3R	14611051	3R_14611051_SNP [dm3] 3R_18785329_SNP [dm6]	C	T	6.729e^-5	0.809	INTRON CG7720
2L	3885556	2L_3885556_SNP [dm3] 2L_3885556_SNP [dm6]	A	C	6.770e^-5	0.809	INTRON capu	TF binding site mE1_TFBS_bab1
X	10886258	X_10886258_SNP [dm3] X_10992225_SNP [dm6]	C	G	6.784e^-5	0.809	INTRON CG42339
2L	19097127	2L_19097127_SNP [dm3] 2L_19097127_SNP [dm6]	T	C	6.811e^-5	0.809	INTRON Lim3
2L	1284258	2L_1284258_SNP [dm3] 2L_1284258_SNP [dm6]	G	A	6.813e^-5	0.809	INTRON robo3
2R	473173	2R_473173_SNP [dm3] 2R_4585668_SNP [dm6]	A	T	6.841e^-5	0.809	INTERGENIC
3R	26075388	3R_26075388_SNP [dm3] 3R_30249666_SNP [dm6]	A	T	6.862e^-5	0.809	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
2L	20070214	2L_20070214_SNP [dm3] 2L_20070214_SNP [dm6]	A	G	6.864e^-5	0.809	SYNONYMOUS_CODING CG10730 UPSTREAM CR44907 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20070211	2L_20070211_SNP [dm3] 2L_20070211_SNP [dm6]	A	G	6.963e^-5	0.809	SYNONYMOUS_CODING CG10730 UPSTREAM CR44907 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18822828	X_18822828_SNP [dm3] X_18928795_SNP [dm6]	T	C	7.047e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13184712	2L_13184712_SNP [dm3] 2L_13184712_SNP [dm6]	G	A	7.062e^-5	0.809	SYNONYMOUS_CODING CG5458 UTR_3_PRIME CG16974 DOWNSTREAM CG16974	TF binding site mE1_TFBS_cad
X	10886198	X_10886198_DEL [dm3] X_10992165_DEL [dm6]	TT	T	7.162e^-5	0.809	INTRON CG42339
3R	10199045	3R_10199045_SNP [dm3] 3R_14373323_SNP [dm6]	A	G	7.296e^-5	0.809	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4310317	2L_4310317_SNP [dm3] 2L_4310317_SNP [dm6]	A	G	7.341e^-5	0.809	INTRON tutl
2L	7563099	2L_7563099_SNP [dm3] 2L_7563099_SNP [dm6]	C	A	7.507e^-5	0.809	INTRON RapGAP1
2R	20435834	2R_20435834_SNP [dm3] 2R_24548311_SNP [dm6]	C	A	7.519e^-5	0.809	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21699625	3L_21699625_SNP [dm3] 3L_21706525_SNP [dm6]	G	T	7.560e^-5	0.809	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	5056165	X_5056165_DEL [dm3] X_5162132_DEL [dm6]	AA	A	7.626e^-5	0.809	INTRON rg & 1 other
3R	18390916	3R_18390916_SNP [dm3] 3R_22565194_SNP [dm6]	A	T	7.679e^-5	0.809	INTERGENIC
2R	473181	2R_473181_SNP [dm3] 2R_4585676_SNP [dm6]	A	C	7.706e^-5	0.809	INTERGENIC
3R	20016232	3R_20016232_SNP [dm3] 3R_24190510_SNP [dm6]	G	A	7.793e^-5	0.809	SYNONYMOUS_CODING jnj
2L	17049631	2L_17049631_SNP [dm3] 2L_17049631_SNP [dm6]	G	A	7.828e^-5	0.809	INTERGENIC
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	7.836e^-5	0.809	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5237780	X_5237780_SNP [dm3] X_5343747_SNP [dm6]	C	T	7.857e^-5	0.809	INTRON SK
2L	17958344	2L_17958344_SNP [dm3] 2L_17958344_SNP [dm6]	T	A	7.884e^-5	0.809	INTERGENIC
2L	3811344	2L_3811344_SNP [dm3] 2L_3811344_SNP [dm6]	T	G	7.946e^-5	0.809	SYNONYMOUS_CODING CG3407 DOWNSTREAM Reph	TF binding site mE1_TFBS_cad
3R	22880987	3R_22880987_DEL [dm3] 3R_27055265_DEL [dm6]	AA	A	8.011e^-5	0.809	INTRON RYa-R
3L	2737997	3L_2737997_SNP [dm3] 3L_2737997_SNP [dm6]	A	G	8.048e^-5	0.809	INTRON Mrtf
3L	9340652	3L_9340652_SNP [dm3] 3L_9347552_SNP [dm6]	C	T	8.058e^-5	0.809	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	17608141	3L_17608141_SNP [dm3] 3L_17615041_SNP [dm6]	T	A	8.073e^-5	0.809	INTRON Eip74EF
2R	10141106	2R_10141106_SNP [dm3] 2R_14253601_SNP [dm6]	A	G	8.093e^-5	0.809	SYNONYMOUS_CODING Hsc70-5
2R	18143004	2R_18143004_SNP [dm3] 2R_22255499_SNP [dm6]	C	T	8.211e^-5	0.809	INTRON dve	TF binding site mE1_TFBS_sens
2L	21978469	2L_21978469_SNP [dm3] 2L_21978469_SNP [dm6]	C	T	8.218e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2488068	2L_2488068_SNP [dm3] 2L_2488068_SNP [dm6]	T	G	8.218e^-5	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2L	19075561	2L_19075561_SNP [dm3] 2L_19075561_SNP [dm6]	C	T	8.264e^-5	0.809	UPSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3495904	3L_3495904_SNP [dm3] 3L_3495904_SNP [dm6]	C	T	8.340e^-5	0.809	INTRON CG42324
2L	11644520	2L_11644520_SNP [dm3] 2L_11644520_SNP [dm6]	A	T	8.348e^-5	0.809	DOWNSTREAM CG6614 INTERGENIC
2L	15821079	2L_15821079_SNP [dm3] 2L_15821079_SNP [dm6]	A	G	8.400e^-5	0.809	INTERGENIC
2R	6799802	2R_6799802_SNP [dm3] 2R_10912297_SNP [dm6]	T	C	8.490e^-5	0.809	INTERGENIC
2L	5943154	2L_5943154_SNP [dm3] 2L_5943154_SNP [dm6]	T	G	8.492e^-5	0.809	UPSTREAM Gpdh DOWNSTREAM CR45289 INTRON Sfp26Ad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	454733	2R_454733_SNP [dm3] 2R_4567228_SNP [dm6]	T	C	8.513e^-5	0.809	INTERGENIC	transposable element FlyBase
3L	9336493	3L_9336493_SNP [dm3] 3L_9343393_SNP [dm6]	G	A	8.596e^-5	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
X	18822835	X_18822835_SNP [dm3] X_18928802_SNP [dm6]	T	C	8.629e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20135482	2L_20135482_SNP [dm3] 2L_20135482_SNP [dm6]	T	C	8.690e^-5	0.809	UPSTREAM CG10651 INTERGENIC
3R	25907613	3R_25907613_SNP [dm3] 3R_30081891_SNP [dm6]	C	T	8.769e^-5	0.809	INTRON sima
X	9176529	X_9176529_SNP [dm3] X_9282496_SNP [dm6]	A	C	8.817e^-5	0.809	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5795876	2R_5795876_SNP [dm3] 2R_9908371_SNP [dm6]	G	T	8.847e^-5	0.809	INTRON FMRFa
3L	2292876	3L_2292876_SNP [dm3] 3L_2292876_SNP [dm6]	G	A	8.848e^-5	0.809	INTRON MsR2
2R	421358	2R_421358_SNP [dm3] 2R_4533853_SNP [dm6]	C	A	8.905e^-5	0.809	INTERGENIC	transposable element FlyBase
2L	17958369	2L_17958369_SNP [dm3] 2L_17958369_SNP [dm6]	C	A	9.015e^-5	0.809	INTERGENIC
2L	11829242	2L_11829242_SNP [dm3] 2L_11829242_SNP [dm6]	C	A	9.041e^-5	0.809	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	16214960	3R_16214960_SNP [dm3] 3R_20389238_SNP [dm6]	A	G	9.087e^-5	0.809	INTRON Gfrl
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	9.109e^-5	0.809	UPSTREAM CG5510 INTERGENIC
2R	473164	2R_473164_SNP [dm3] 2R_4585659_SNP [dm6]	A	C	9.118e^-5	0.809	INTERGENIC
3R	14311182	3R_14311182_SNP [dm3] 3R_18485460_SNP [dm6]	A	T	9.122e^-5	0.809	INTRON fru
2L	2488101	2L_2488101_SNP [dm3] 2L_2488101_SNP [dm6]	C	T	9.216e^-5	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	12660045	3L_12660045_SNP [dm3] 3L_12666945_SNP [dm6]	T	G	9.231e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5941012	2L_5941012_SNP [dm3] 2L_5941012_SNP [dm6]	T	G	9.240e^-5	0.809	UPSTREAM CR45289 DOWNSTREAM CR45288 INTERGENIC
3L	9338358	3L_9338358_SNP [dm3] 3L_9345258_SNP [dm6]	T	A	9.279e^-5	0.809	INTRON PGRP-LC
2R	14496902	2R_14496902_SNP [dm3] 2R_18609397_SNP [dm6]	A	G	9.359e^-5	0.809	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9714314	X_9714314_SNP [dm3] X_9820281_SNP [dm6]	G	C	9.367e^-5	0.809	INTRON CG32698
2L	3665280	2L_3665280_SNP [dm3] 2L_3665280_SNP [dm6]	T	C	9.407e^-5	0.809	INTRON CG34340
3R	14675277	3R_14675277_SNP [dm3] 3R_18849555_SNP [dm6]	T	C	9.413e^-5	0.809	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10261958	X_10261958_SNP [dm3] X_10367925_SNP [dm6]	C	T	9.512e^-5	0.809	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	12778592	3R_12778592_SNP [dm3] 3R_16952870_SNP [dm6]	T	C	9.548e^-5	0.809	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18822839	X_18822839_SNP [dm3] X_18928806_SNP [dm6]	G	A	9.551e^-5	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	473179	2R_473179_INS [dm3] 2R_4585674_INS [dm6]	G	GTGG	9.571e^-5	0.809	INTERGENIC
2R	473165	2R_473165_SNP [dm3] 2R_4585660_SNP [dm6]	T	G	9.684e^-5	0.809	INTERGENIC
3L	4336238	3L_4336238_SNP [dm3] 3L_4336238_SNP [dm6]	T	A	9.752e^-5	0.809	INTRON Cip4
3R	26075497	3R_26075497_MNP [dm3] 3R_30249775_MNP [dm6]	GGA	AAT	9.842e^-5	0.809	NON_SYNONYMOUS_CODING CG34299	TF binding site mE1_TFBS_inv
2L	5943136	2L_5943136_SNP [dm3] 2L_5943136_SNP [dm6]	T	G	9.902e^-5	0.809	UPSTREAM Gpdh DOWNSTREAM CR45289 INTRON Sfp26Ad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6450632	2R_6450632_SNP [dm3] 2R_10563127_SNP [dm6]	T	A	1.002e^-4	0.809	INTRON psq	TF binding site mE1_TFBS_HSA
2L	7563937	2L_7563937_SNP [dm3] 2L_7563937_SNP [dm6]	G	A	1.004e^-4	0.809	INTRON RapGAP1
2L	7563959	2L_7563959_SNP [dm3] 2L_7563959_SNP [dm6]	C	G	1.004e^-4	0.809	INTRON RapGAP1
2L	7565066	2L_7565066_SNP [dm3] 2L_7565066_SNP [dm6]	T	A	1.004e^-4	0.809	INTRON RapGAP1
X	8288321	X_8288321_SNP [dm3] X_8394288_SNP [dm6]	A	C	1.005e^-4	0.809	INTERGENIC
X	18822815	X_18822815_SNP [dm3] X_18928782_SNP [dm6]	T	G	1.008e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18143110	2R_18143110_SNP [dm3] 2R_22255605_SNP [dm6]	G	C	1.015e^-4	0.809	INTRON dve	TF binding site mE1_TFBS_sens
X	8835898	X_8835898_SNP [dm3] X_8941865_SNP [dm6]	C	A	1.016e^-4	0.809	INTRON rdgA
3L	3572694	3L_3572694_SNP [dm3] 3L_3572694_SNP [dm6]	G	A	1.027e^-4	0.809	INTRON Eip63E
2R	12260774	2R_12260774_SNP [dm3] 2R_16373269_SNP [dm6]	G	T	1.035e^-4	0.809	INTERGENIC
2L	20064873	2L_20064873_SNP [dm3] 2L_20064873_SNP [dm6]	G	C	1.040e^-4	0.809	SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4486715	2L_4486715_SNP [dm3] 2L_4486715_SNP [dm6]	C	G	1.044e^-4	0.809	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2222255	3L_2222255_SNP [dm3] 3L_2222255_SNP [dm6]	G	A	1.048e^-4	0.809	INTERGENIC
2R	9449435	2R_9449435_SNP [dm3] 2R_13561930_SNP [dm6]	C	T	1.051e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	15363184	2L_15363184_SNP [dm3] 2L_15363184_SNP [dm6]	T	G	1.062e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	453533	2R_453533_SNP [dm3] 2R_4566028_SNP [dm6]	A	G	1.066e^-4	0.809	DOWNSTREAM Stlk INTERGENIC	transposable element FlyBase
X	21380818	X_21380818_SNP [dm3] X_21509791_SNP [dm6]	G	A	1.068e^-4	0.809	INTRON CR45082
2L	4480288	2L_4480288_SNP [dm3] 2L_4480288_SNP [dm6]	A	G	1.071e^-4	0.809	INTRON dp	TF binding site mE1_TFBS_cad
3R	26188349	3R_26188349_SNP [dm3] 3R_30362627_SNP [dm6]	A	G	1.075e^-4	0.809	UTR_3_PRIME hdc DOWNSTREAM hdc
3R	26075141	3R_26075141_SNP [dm3] 3R_30249419_SNP [dm6]	A	G	1.076e^-4	0.809	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens
X	908559	X_908559_SNP [dm3] X_1014526_SNP [dm6]	A	G	1.084e^-4	0.809	UTR_3_PRIME CG11638 INTRON su_w[a]_
X	18822866	X_18822866_SNP [dm3] X_18928833_SNP [dm6]	G	A	1.093e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18822826	X_18822826_SNP [dm3] X_18928793_SNP [dm6]	T	A	1.098e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3574229	3L_3574229_SNP [dm3] 3L_3574229_SNP [dm6]	T	A	1.101e^-4	0.809	INTRON Eip63E
3R	16528700	3R_16528700_SNP [dm3] 3R_20702978_SNP [dm6]	T	A	1.112e^-4	0.809	INTRON Oamb
2L	3534691	2L_3534691_SNP [dm3] 2L_3534691_SNP [dm6]	A	C	1.112e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	19666250	2R_19666250_SNP [dm3] 2R_23778727_SNP [dm6]	T	C	1.113e^-4	0.809	INTRON CG9850
3R	16528999	3R_16528999_SNP [dm3] 3R_20703277_SNP [dm6]	T	C	1.122e^-4	0.809	INTRON Oamb
X	14223693	X_14223693_SNP [dm3] X_14329660_SNP [dm6]	A	G	1.123e^-4	0.809	INTRON dpr8
2L	11072516	2L_11072516_SNP [dm3] 2L_11072516_SNP [dm6]	G	A	1.125e^-4	0.809	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20138020	2L_20138020_SNP [dm3] 2L_20138020_SNP [dm6]	A	G	1.127e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	473161	2R_473161_SNP [dm3] 2R_4585656_SNP [dm6]	T	A	1.129e^-4	0.809	INTERGENIC
2L	2591954	2L_2591954_SNP [dm3] 2L_2591954_SNP [dm6]	C	T	1.130e^-4	0.809	START_GAINED CG15394 UTR_5_PRIME CG15394 UPSTREAM CG15394
2R	473170	2R_473170_SNP [dm3] 2R_4585665_SNP [dm6]	A	G	1.137e^-4	0.809	INTERGENIC
2R	10139676	2R_10139676_SNP [dm3] 2R_14252171_SNP [dm6]	C	A	1.139e^-4	0.809	DOWNSTREAM Hsc70-5 INTRON Mdr50	TF binding site mE1_TFBS_cad
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	1.149e^-4	0.809	UPSTREAM hoe1 INTRON hoe1
2L	15363269	2L_15363269_SNP [dm3] 2L_15363269_SNP [dm6]	T	C	1.153e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14148581	2R_14148581_SNP [dm3] 2R_18261076_SNP [dm6]	C	T	1.154e^-4	0.809	INTERGENIC
2R	473185	2R_473185_SNP [dm3] 2R_4585680_SNP [dm6]	T	G	1.157e^-4	0.809	INTERGENIC
3R	12630642	3R_12630642_SNP [dm3] 3R_16804920_SNP [dm6]	T	C	1.162e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17876486	2L_17876486_SNP [dm3] 2L_17876486_SNP [dm6]	T	C	1.173e^-4	0.809	INTERGENIC
2R	454869	2R_454869_SNP [dm3] 2R_4567364_SNP [dm6]	A	C	1.179e^-4	0.809	INTERGENIC	transposable element FlyBase
3R	1910418	3R_1910418_INS [dm3] 3R_6084696_INS [dm6]	A	ATTATATAATTTTATT...	1.185e^-4	0.809	INTERGENIC
2R	473176	2R_473176_SNP [dm3] 2R_4585671_SNP [dm6]	G	C	1.185e^-4	0.809	INTERGENIC
2R	2797899	2R_2797899_DEL [dm3] 2R_6910394_DEL [dm6]	AATGGTTTAAGAAGCTTCCA...	A	1.186e^-4	0.809	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18822978	X_18822978_SNP [dm3] X_18928945_SNP [dm6]	A	C	1.190e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3697445	2L_3697445_SNP [dm3] 2L_3697445_SNP [dm6]	A	T	1.197e^-4	0.809	SYNONYMOUS_CODING CG3604 UPSTREAM CG16712
3R	2259657	3R_2259657_SNP [dm3] 3R_6433935_SNP [dm6]	G	A	1.200e^-4	0.809	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7588565	2L_7588565_SNP [dm3] 2L_7588565_SNP [dm6]	G	A	1.212e^-4	0.809	INTERGENIC
2R	473192	2R_473192_INS [dm3] 2R_4585687_INS [dm6]	T	TCTG	1.212e^-4	0.809	INTERGENIC
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	1.212e^-4	0.809	INTERGENIC
3R	20017585	3R_20017585_SNP [dm3] 3R_24191863_SNP [dm6]	G	A	1.218e^-4	0.809	NON_SYNONYMOUS_CODING jnj
X	14442050	X_14442050_SNP [dm3] X_14548017_SNP [dm6]	T	C	1.224e^-4	0.809	INTERGENIC
X	14442262	X_14442262_SNP [dm3] X_14548229_SNP [dm6]	G	C	1.224e^-4	0.809	INTERGENIC
3R	10001581	3R_10001581_SNP [dm3] 3R_14175859_SNP [dm6]	C	T	1.231e^-4	0.809	UTR_3_PRIME Dop1R1
2L	13307894	2L_13307894_SNP [dm3] 2L_13307894_SNP [dm6]	T	G	1.243e^-4	0.809	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	9107537	X_9107537_SNP [dm3] X_9213504_SNP [dm6]	A	C	1.247e^-4	0.809	INTERGENIC
2R	8586240	2R_8586240_SNP [dm3] 2R_12698735_SNP [dm6]	T	C	1.248e^-4	0.809	INTERGENIC
X	16018845	X_16018845_SNP [dm3] X_16124812_SNP [dm6]	T	G	1.248e^-4	0.809	UPSTREAM disco-r INTRON disco-r
2L	16152206	2L_16152206_SNP [dm3] 2L_16152206_SNP [dm6]	A	T	1.251e^-4	0.809	INTERGENIC
3L	1475364	3L_1475364_SNP [dm3] 3L_1475364_SNP [dm6]	T	C	1.257e^-4	0.809	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
3L	21700639	3L_21700639_SNP [dm3] 3L_21707539_SNP [dm6]	A	T	1.258e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	7274630	3L_7274630_DEL [dm3] 3L_7281530_DEL [dm6]	CGTGTGTTTGTGT...	C	1.258e^-4	0.809	INTRON unc-13-4A
2L	6938209	2L_6938209_SNP [dm3] 2L_6938209_SNP [dm6]	C	T	1.259e^-4	0.809	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_chinmo
2R	453317	2R_453317_SNP [dm3] 2R_4565812_SNP [dm6]	G	T	1.263e^-4	0.809	DOWNSTREAM Stlk INTERGENIC	transposable element FlyBase
3L	9307329	3L_9307329_SNP [dm3] 3L_9314229_SNP [dm6]	G	A	1.265e^-4	0.809	INTERGENIC
3L	16920108	3L_16920108_SNP [dm3] 3L_16927008_SNP [dm6]	G	T	1.267e^-4	0.809	INTRON CG13023
2R	18976723	2R_18976723_SNP [dm3] 2R_23089200_SNP [dm6]	A	C	1.272e^-4	0.809	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	1.274e^-4	0.809	NON_SYNONYMOUS_CODING dp INTRON dp
3L	10230695	3L_10230695_SNP [dm3] 3L_10237595_SNP [dm6]	G	A	1.280e^-4	0.809	DOWNSTREAM CR44542 INTERGENIC
2L	15508712	2L_15508712_SNP [dm3] 2L_15508712_SNP [dm6]	G	A	1.284e^-4	0.809	INTERGENIC
3L	12520246	3L_12520246_SNP [dm3] 3L_12527146_SNP [dm6]	A	G	1.291e^-4	0.809	UPSTREAM eIF-2beta DOWNSTREAM nst INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24988515	3R_24988515_SNP [dm3] 3R_29162793_SNP [dm6]	G	T	1.307e^-4	0.809	SYNONYMOUS_CODING CG11897
X	20014542	X_20014542_SNP [dm3] X_20120509_SNP [dm6]	T	A	1.308e^-4	0.809	INTERGENIC
X	18720198	X_18720198_SNP [dm3] X_18826165_SNP [dm6]	G	A	1.315e^-4	0.809	SYNONYMOUS_CODING CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	409302	2R_409302_SNP [dm3] 2R_4521797_SNP [dm6]	T	C	1.325e^-4	0.809	INTERGENIC
2L	11828426	2L_11828426_SNP [dm3] 2L_11828426_SNP [dm6]	T	C	1.329e^-4	0.809	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	463605	2R_463605_SNP [dm3] 2R_4576100_SNP [dm6]	T	A	1.333e^-4	0.809	INTERGENIC
3R	14612760	3R_14612760_DEL [dm3] 3R_18787038_DEL [dm6]	TTGG	T	1.339e^-4	0.809	INTRON CG7720
2L	5923972	2L_5923972_SNP [dm3] 2L_5923972_SNP [dm6]	T	C	1.339e^-4	0.809	UPSTREAM CG9016 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18929169	X_18929169_SNP [dm3] X_19035136_SNP [dm6]	T	A	1.340e^-4	0.809	INTERGENIC
X	3436979	X_3436979_DEL [dm3] X_3542946_DEL [dm6]	AT	A	1.346e^-4	0.809	INTRON CG32791
3L	5569074	3L_5569074_SNP [dm3] 3L_5575974_SNP [dm6]	G	A	1.354e^-4	0.809	UPSTREAM Msr-110 INTRON Msr-110
3L	1376855	3L_1376855_SNP [dm3] 3L_1376855_SNP [dm6]	T	C	1.358e^-4	0.809	INTRON Ptp61F & 1 other
3R	23480876	3R_23480876_SNP [dm3] 3R_27655154_SNP [dm6]	T	A	1.358e^-4	0.809	INTRON tau
3R	23480880	3R_23480880_SNP [dm3] 3R_27655158_SNP [dm6]	T	A	1.358e^-4	0.809	INTRON tau
3L	16920154	3L_16920154_SNP [dm3] 3L_16927054_SNP [dm6]	A	T	1.364e^-4	0.809	INTRON CG13023
3L	6576538	3L_6576538_SNP [dm3] 3L_6583438_SNP [dm6]	T	A	1.371e^-4	0.809	INTRON CG18769 & 1 other
2R	454772	2R_454772_SNP [dm3] 2R_4567267_SNP [dm6]	G	A	1.376e^-4	0.809	INTERGENIC	transposable element FlyBase
2R	7835809	2R_7835809_SNP [dm3] 2R_11948304_SNP [dm6]	C	T	1.382e^-4	0.809	INTRON CG13188
2R	17170168	2R_17170168_SNP [dm3] 2R_21282663_SNP [dm6]	G	A	1.382e^-4	0.809	UTR_5_PRIME MFS16 UPSTREAM MFS16 INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25907670	3R_25907670_DEL [dm3] 3R_30081948_DEL [dm6]	CAA	C	1.392e^-4	0.809	INTRON sima
2L	19019180	2L_19019180_SNP [dm3] 2L_19019180_SNP [dm6]	C	A	1.393e^-4	0.809	DOWNSTREAM CR44184 INTERGENIC
3L	1135580	3L_1135580_SNP [dm3] 3L_1135580_SNP [dm6]	T	C	1.404e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_inv
2R	458710	2R_458710_SNP [dm3] 2R_4571205_SNP [dm6]	G	A	1.405e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
2L	4478578	2L_4478578_SNP [dm3] 2L_4478578_SNP [dm6]	T	G	1.415e^-4	0.809	UTR_3_PRIME dp DOWNSTREAM dp
3L	15899451	3L_15899451_SNP [dm3] 3L_15906351_SNP [dm6]	G	T	1.422e^-4	0.809	INTRON sff
3L	18975906	3L_18975906_SNP [dm3] 3L_18982806_SNP [dm6]	A	T	1.430e^-4	0.809	INTERGENIC
X	18861589	X_18861589_INS [dm3] X_18967556_INS [dm6]	T	TT	1.435e^-4	0.809	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16528675	3R_16528675_SNP [dm3] 3R_20702953_SNP [dm6]	G	A	1.436e^-4	0.809	INTRON Oamb
3R	16528681	3R_16528681_SNP [dm3] 3R_20702959_SNP [dm6]	C	T	1.436e^-4	0.809	INTRON Oamb
X	8835890	X_8835890_SNP [dm3] X_8941857_SNP [dm6]	C	A	1.437e^-4	0.809	INTRON rdgA
2R	439888	2R_439888_SNP [dm3] 2R_4552383_SNP [dm6]	A	C	1.443e^-4	0.809	INTRON Stlk	transposable element FlyBase
2R	18143206	2R_18143206_SNP [dm3] 2R_22255701_SNP [dm6]	C	A	1.443e^-4	0.809	INTRON dve	TF binding site mE1_TFBS_sens
X	901394	X_901394_SNP [dm3] X_1007361_SNP [dm6]	A	T	1.444e^-4	0.809	INTERGENIC
X	14442037	X_14442037_SNP [dm3] X_14548004_SNP [dm6]	T	A	1.447e^-4	0.809	INTERGENIC
2R	13629978	2R_13629978_SNP [dm3] 2R_17742473_SNP [dm6]	A	T	1.447e^-4	0.809	INTRON CG4996
2R	14148019	2R_14148019_SNP [dm3] 2R_18260514_SNP [dm6]	G	A	1.448e^-4	0.809	INTERGENIC
2L	15380867	2L_15380867_SNP [dm3] 2L_15380867_SNP [dm6]	G	A	1.449e^-4	0.809	INTERGENIC
3R	12689089	3R_12689089_DEL [dm3] 3R_16863367_DEL [dm6]	GAGTGG	G	1.454e^-4	0.809	INTRON iab-8
2L	11940370	2L_11940370_SNP [dm3] 2L_11940370_SNP [dm6]	G	A	1.463e^-4	0.809	INTERGENIC
2R	473120	2R_473120_SNP [dm3] 2R_4585615_SNP [dm6]	C	A	1.463e^-4	0.809	INTERGENIC
2L	17950452	2L_17950452_SNP [dm3] 2L_17950452_SNP [dm6]	T	C	1.464e^-4	0.809	INTRON CR44398 EXON CR44397
3R	20017660	3R_20017660_SNP [dm3] 3R_24191938_SNP [dm6]	C	T	1.466e^-4	0.809	NON_SYNONYMOUS_CODING jnj
X	10019697	X_10019697_SNP [dm3] X_10125664_SNP [dm6]	G	A	1.469e^-4	0.809	INTRON CR44894 & 1 other
3R	25907514	3R_25907514_DEL [dm3] 3R_30081792_DEL [dm6]	AA	A	1.473e^-4	0.809	INTRON sima
X	9107884	X_9107884_SNP [dm3] X_9213851_SNP [dm6]	A	C	1.475e^-4	0.809	INTERGENIC
3R	14684189	3R_14684189_SNP [dm3] 3R_18858467_SNP [dm6]	C	T	1.476e^-4	0.809	INTERGENIC
3L	3142165	3L_3142165_SNP [dm3] 3L_3142165_SNP [dm6]	G	A	1.484e^-4	0.809	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	25966419	3R_25966419_DEL [dm3] 3R_30140697_DEL [dm6]	CG	C	1.486e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9336471	3L_9336471_SNP [dm3] 3L_9343371_SNP [dm6]	C	A	1.486e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	1.494e^-4	0.809	INTRON Stlk	transposable element FlyBase
2L	17876483	2L_17876483_SNP [dm3] 2L_17876483_SNP [dm6]	C	T	1.495e^-4	0.809	INTERGENIC
X	14464199	X_14464199_SNP [dm3] X_14570166_SNP [dm6]	G	C	1.496e^-4	0.809	INTERGENIC
3R	23624260	3R_23624260_SNP [dm3] 3R_27798538_SNP [dm6]	A	C	1.497e^-4	0.809	INTRON CG34353
2R	17652530	2R_17652530_SNP [dm3] 2R_21765025_SNP [dm6]	C	T	1.499e^-4	0.809	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
2R	17652529	2R_17652529_SNP [dm3] 2R_21765024_SNP [dm6]	T	A	1.501e^-4	0.809	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3R	14330990	3R_14330990_SNP [dm3] 3R_18505268_SNP [dm6]	C	T	1.505e^-4	0.809	INTRON fru
3R	22876886	3R_22876886_DEL [dm3] 3R_27051164_DEL [dm6]	TTC	CA	1.517e^-4	0.809	DOWNSTREAM TwdlT INTRON RYa-R
3L	8728539	3L_8728539_SNP [dm3] 3L_8735439_SNP [dm6]	C	A	1.524e^-4	0.809	INTRON Prm
2R	473194	2R_473194_SNP [dm3] 2R_4585689_SNP [dm6]	A	G	1.532e^-4	0.809	INTERGENIC
2L	18940407	2L_18940407_SNP [dm3] 2L_18940407_SNP [dm6]	C	T	1.535e^-4	0.809	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad
X	11161743	X_11161743_SNP [dm3] X_11267710_SNP [dm6]	C	T	1.538e^-4	0.809	INTRON CG44422
2R	438988	2R_438988_SNP [dm3] 2R_4551483_SNP [dm6]	T	A	1.546e^-4	0.809	INTRON Stlk
2R	454744	2R_454744_SNP [dm3] 2R_4567239_SNP [dm6]	A	T	1.547e^-4	0.809	INTERGENIC	transposable element FlyBase
2L	5993730	2L_5993730_SNP [dm3] 2L_5993730_SNP [dm6]	A	G	1.558e^-4	0.809	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	16944520	2L_16944520_SNP [dm3] 2L_16944520_SNP [dm6]	G	A	1.562e^-4	0.809	DOWNSTREAM CR43053 INTERGENIC
3R	9385594	3R_9385594_SNP [dm3] 3R_13559872_SNP [dm6]	A	T	1.567e^-4	0.809	INTERGENIC
2L	15351926	2L_15351926_SNP [dm3] 2L_15351926_SNP [dm6]	T	A	1.572e^-4	0.809	INTERGENIC
2R	415055	2R_415055_SNP [dm3] 2R_4527550_SNP [dm6]	T	A	1.576e^-4	0.809	INTERGENIC	transposable element FlyBase
2L	6571783	2L_6571783_SNP [dm3] 2L_6571783_SNP [dm6]	A	C	1.584e^-4	0.809	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
3L	19653264	3L_19653264_SNP [dm3] 3L_19660164_SNP [dm6]	T	A	1.591e^-4	0.809	INTRON tey
2L	20072060	2L_20072060_SNP [dm3] 2L_20072060_SNP [dm6]	C	T	1.594e^-4	0.809	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9390004	2L_9390004_SNP [dm3] 2L_9390004_SNP [dm6]	G	C	1.601e^-4	0.809	INTRON Shawl & 1 other
2L	13184950	2L_13184950_SNP [dm3] 2L_13184950_SNP [dm6]	T	C	1.605e^-4	0.809	UTR_3_PRIME CG16974 DOWNSTREAM CG5458	TF binding site mE1_TFBS_cad
3L	9336518	3L_9336518_SNP [dm3] 3L_9343418_SNP [dm6]	C	G	1.614e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	25824773	3R_25824773_SNP [dm3] 3R_29999051_SNP [dm6]	C	T	1.616e^-4	0.809	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9115704	2R_9115704_SNP [dm3] 2R_13228199_SNP [dm6]	A	C	1.623e^-4	0.809	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
2R	465357	2R_465357_SNP [dm3] 2R_4577852_SNP [dm6]	C	A	1.636e^-4	0.809	INTERGENIC
3L	18139124	3L_18139124_INS [dm3] 3L_18146024_INS [dm6]	G	GG	1.641e^-4	0.809	DOWNSTREAM gk INTERGENIC
X	14818649	X_14818649_SNP [dm3] X_14924616_SNP [dm6]	T	G	1.641e^-4	0.809	INTRON Flo2
3R	15026293	3R_15026293_SNP [dm3] 3R_19200571_SNP [dm6]	T	C	1.644e^-4	0.809	SYNONYMOUS_CODING CG31475
3L	9338268	3L_9338268_SNP [dm3] 3L_9345168_SNP [dm6]	C	T	1.656e^-4	0.809	INTRON PGRP-LC
2R	19668146	2R_19668146_SNP [dm3] 2R_23780623_SNP [dm6]	C	G	1.663e^-4	0.809	INTRON CG9850
2R	19668156	2R_19668156_SNP [dm3] 2R_23780633_SNP [dm6]	C	G	1.663e^-4	0.809	INTRON CG9850
2L	15351969	2L_15351969_SNP [dm3] 2L_15351969_SNP [dm6]	A	T	1.669e^-4	0.809	INTERGENIC
2L	7357451	2L_7357451_SNP [dm3] 2L_7357451_SNP [dm6]	G	A	1.670e^-4	0.809	INTERGENIC
3R	12628819	3R_12628819_SNP [dm3] 3R_16803097_SNP [dm6]	T	C	1.673e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9714240	X_9714240_SNP [dm3] X_9820207_SNP [dm6]	A	C	1.673e^-4	0.809	INTRON CG32698
2L	10675451	2L_10675451_SNP [dm3] 2L_10675451_SNP [dm6]	G	A	1.673e^-4	0.809	INTERGENIC
2R	5793647	2R_5793647_SNP [dm3] 2R_9906142_SNP [dm6]	A	G	1.676e^-4	0.809	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
2R	7795904	2R_7795904_SNP [dm3] 2R_11908399_SNP [dm6]	C	G	1.689e^-4	0.809	INTRON CG13183
2R	18788056	2R_18788056_SNP [dm3] 2R_22900533_SNP [dm6]	G	T	1.696e^-4	0.809	INTRON nahoda
2R	5220771	2R_5220771_SNP [dm3] 2R_9333266_SNP [dm6]	T	C	1.697e^-4	0.809	INTRON CG13954 & 1 other
3L	10996101	3L_10996101_SNP [dm3] 3L_11003001_SNP [dm6]	A	T	1.697e^-4	0.809	INTRON klu
2L	7562278	2L_7562278_SNP [dm3] 2L_7562278_SNP [dm6]	T	A	1.702e^-4	0.809	INTRON RapGAP1
2L	20074155	2L_20074155_INS [dm3] 2L_20074155_INS [dm6]	G	GCTCATCAG	1.704e^-4	0.809	DOWNSTREAM bwa INTRON pr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9247559	2R_9247559_SNP [dm3] 2R_13360054_SNP [dm6]	A	G	1.704e^-4	0.809	INTERGENIC
X	9107881	X_9107881_DEL [dm3] X_9213848_DEL [dm6]	AA	A	1.713e^-4	0.809	INTERGENIC
2L	17865083	2L_17865083_SNP [dm3] 2L_17865083_SNP [dm6]	A	C	1.717e^-4	0.809	INTRON CadN2
X	6766719	X_6766719_SNP [dm3] X_6872686_SNP [dm6]	T	C	1.721e^-4	0.809	INTRON CG43736	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19040287	3R_19040287_SNP [dm3] 3R_23214565_SNP [dm6]	C	A	1.756e^-4	0.809	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
3R	16528741	3R_16528741_SNP [dm3] 3R_20703019_SNP [dm6]	C	T	1.758e^-4	0.809	INTRON Oamb
2L	17954595	2L_17954595_SNP [dm3] 2L_17954595_SNP [dm6]	G	T	1.759e^-4	0.809	INTERGENIC
2L	17865047	2L_17865047_SNP [dm3] 2L_17865047_SNP [dm6]	G	A	1.765e^-4	0.809	INTRON CadN2
3R	16528539	3R_16528539_SNP [dm3] 3R_20702817_SNP [dm6]	G	T	1.769e^-4	0.809	INTRON Oamb
X	18628075	X_18628075_SNP [dm3] X_18734042_SNP [dm6]	G	A	1.769e^-4	0.809	DOWNSTREAM CR45513 INTERGENIC
3R	16058495	3R_16058495_SNP [dm3] 3R_20232773_SNP [dm6]	T	C	1.773e^-4	0.809	INTRON Nlg4
2L	17956749	2L_17956749_SNP [dm3] 2L_17956749_SNP [dm6]	A	C	1.774e^-4	0.809	INTERGENIC
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	1.776e^-4	0.809	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	1.783e^-4	0.809	INTRON Hil
3R	20017754	3R_20017754_SNP [dm3] 3R_24192032_SNP [dm6]	G	T	1.786e^-4	0.809	INTRON jnj
2L	12497263	2L_12497263_SNP [dm3] 2L_12497263_SNP [dm6]	C	T	1.788e^-4	0.809	SYNONYMOUS_CODING t-cup INTRON bun
3L	9336500	3L_9336500_SNP [dm3] 3L_9343400_SNP [dm6]	A	T	1.788e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	12475004	3L_12475004_SNP [dm3] 3L_12481904_SNP [dm6]	A	T	1.797e^-4	0.809	UPSTREAM CG33725 INTRON CG10663
2R	7499416	2R_7499416_INS [dm3] 2R_11611911_INS [dm6]	G	GA	1.797e^-4	0.809	INTRON tou	TF binding site BDTNP1_TFBS_dl
2L	16021249	2L_16021249_SNP [dm3] 2L_16021249_SNP [dm6]	C	T	1.799e^-4	0.809	INTRON beat-Ic
3L	10996371	3L_10996371_SNP [dm3] 3L_11003271_SNP [dm6]	C	G	1.799e^-4	0.809	INTRON klu
3R	5562536	3R_5562536_SNP [dm3] 3R_9736814_SNP [dm6]	G	C	1.800e^-4	0.809	SYNONYMOUS_CODING CG12950
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	1.810e^-4	0.809	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10185979	X_10185979_SNP [dm3] X_10291946_SNP [dm6]	T	G	1.812e^-4	0.809	INTRON alpha-Man-I
3R	17570599	3R_17570599_SNP [dm3] 3R_21744877_SNP [dm6]	T	G	1.819e^-4	0.809	UPSTREAM CG31343 DOWNSTREAM CG5849 INTERGENIC
2L	12598187	2L_12598187_SNP [dm3] 2L_12598187_SNP [dm6]	T	A	1.821e^-4	0.809	INTRON nub
3L	3481012	3L_3481012_SNP [dm3] 3L_3481012_SNP [dm6]	G	A	1.823e^-4	0.809	INTRON CG42324
X	8288266	X_8288266_SNP [dm3] X_8394233_SNP [dm6]	A	C	1.832e^-4	0.809	INTERGENIC
3L	5569096	3L_5569096_SNP [dm3] 3L_5575996_SNP [dm6]	A	T	1.834e^-4	0.809	UPSTREAM Msr-110 INTRON Msr-110
2L	15363051	2L_15363051_SNP [dm3] 2L_15363051_SNP [dm6]	A	C	1.835e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26185817	3R_26185817_SNP [dm3] 3R_30360095_SNP [dm6]	G	A	1.837e^-4	0.809	INTRON hdc	TF binding site mE1_TFBS_chinmo
X	1095949	X_1095949_SNP [dm3] X_1201916_SNP [dm6]	C	T	1.846e^-4	0.809	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo
3R	25907637	3R_25907637_SNP [dm3] 3R_30081915_SNP [dm6]	A	C	1.871e^-4	0.809	INTRON sima
3L	15898478	3L_15898478_SNP [dm3] 3L_15905378_SNP [dm6]	G	A	1.874e^-4	0.809	SYNONYMOUS_CODING sff	TF binding site BDTNP1_TFBS_sna
2L	12498134	2L_12498134_SNP [dm3] 2L_12498134_SNP [dm6]	A	G	1.880e^-4	0.809	UPSTREAM t-cup INTRON bun
3R	14331644	3R_14331644_SNP [dm3] 3R_18505922_SNP [dm6]	G	C	1.883e^-4	0.809	INTRON fru
3L	3572673	3L_3572673_DEL [dm3] 3L_3572673_DEL [dm6]	AGACGA	A	1.887e^-4	0.809	INTRON Eip63E
2L	5943435	2L_5943435_SNP [dm3] 2L_5943435_SNP [dm6]	A	C	1.889e^-4	0.809	UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	12054321	X_12054321_SNP [dm3] X_12160288_SNP [dm6]	C	T	1.906e^-4	0.809	INTRON Ten-a
2L	18604798	2L_18604798_SNP [dm3] 2L_18604798_SNP [dm6]	G	T	1.910e^-4	0.809	SYNONYMOUS_CODING CG10413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10915348	3R_10915348_SNP [dm3] 3R_15089626_SNP [dm6]	C	T	1.913e^-4	0.809	INTRON CG6966	TF binding site mE1_TFBS_Trl
3L	10996100	3L_10996100_SNP [dm3] 3L_11003000_SNP [dm6]	G	T	1.914e^-4	0.809	INTRON klu
2R	17798459	2R_17798459_SNP [dm3] 2R_21910954_SNP [dm6]	T	A	1.924e^-4	0.809	INTRON Fili
2L	15321693	2L_15321693_SNP [dm3] 2L_15321693_SNP [dm6]	T	A	1.925e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25145013	3R_25145013_SNP [dm3] 3R_29319291_SNP [dm6]	A	G	1.929e^-4	0.809	SYNONYMOUS_CODING Cnx99A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15327450	X_15327450_DEL [dm3] X_15433417_DEL [dm6]	GATTGTGGGCGTTCGAGTGG...	G	1.930e^-4	0.809	INTRON Cngl	transposable element FlyBase
X	11937866	X_11937866_SNP [dm3] X_12043833_SNP [dm6]	A	C	1.934e^-4	0.809	UTR_5_PRIME Ten-a EXON CR43960
3L	16068284	3L_16068284_SNP [dm3] 3L_16075184_SNP [dm6]	T	C	1.935e^-4	0.809	INTRON Mbs	TF binding site BDTNP1_TFBS_twi
X	9714318	X_9714318_SNP [dm3] X_9820285_SNP [dm6]	T	A	1.937e^-4	0.809	INTRON CG32698
3R	25908915	3R_25908915_DEL [dm3] 3R_30083193_DEL [dm6]	CC	C	1.944e^-4	0.809	INTRON sima
2L	12498119	2L_12498119_SNP [dm3] 2L_12498119_SNP [dm6]	C	A	1.949e^-4	0.809	UPSTREAM t-cup INTRON bun
3R	25908931	3R_25908931_SNP [dm3] 3R_30083209_SNP [dm6]	C	A	1.950e^-4	0.809	INTRON sima
2R	473183	2R_473183_SNP [dm3] 2R_4585678_SNP [dm6]	G	A	1.951e^-4	0.809	INTERGENIC
2R	401390	2R_401390_SNP [dm3] 2R_4513885_SNP [dm6]	A	G	1.958e^-4	0.809	INTERGENIC	transposable element FlyBase
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	1.967e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_sens
2R	14021830	2R_14021830_SNP [dm3] 2R_18134325_SNP [dm6]	G	A	1.967e^-4	0.809	INTRON Hsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13678164	3R_13678164_SNP [dm3] 3R_17852442_SNP [dm6]	C	T	1.974e^-4	0.809	SYNONYMOUS_CODING tinc
3R	6574353	3R_6574353_SNP [dm3] 3R_10748631_SNP [dm6]	C	T	1.980e^-4	0.809	INTRON TkR86C
2L	7537166	2L_7537166_SNP [dm3] 2L_7537166_SNP [dm6]	T	C	1.981e^-4	0.809	INTRON RapGAP1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	9336598	3L_9336598_SNP [dm3] 3L_9343498_SNP [dm6]	C	A	1.991e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
X	7530192	X_7530192_SNP [dm3] X_7636159_SNP [dm6]	C	G	1.993e^-4	0.809	INTRON ct
2L	10251255	2L_10251255_SNP [dm3] 2L_10251255_SNP [dm6]	T	C	1.995e^-4	0.809	SYNONYMOUS_CODING CG31717 UPSTREAM bsk & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2488098	2L_2488098_SNP [dm3] 2L_2488098_SNP [dm6]	G	T	1.998e^-4	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2L	20070068	2L_20070068_SNP [dm3] 2L_20070068_SNP [dm6]	T	C	1.998e^-4	0.809	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
3R	20017764	3R_20017764_SNP [dm3] 3R_24192042_SNP [dm6]	C	A	1.999e^-4	0.809	SPLICE_SITE_REGION jnj INTRON jnj
X	18719096	X_18719096_SNP [dm3] X_18825063_SNP [dm6]	G	A	2.004e^-4	0.809	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11936286	2L_11936286_SNP [dm3] 2L_11936286_SNP [dm6]	T	C	2.005e^-4	0.809	SYNONYMOUS_CODING Or33b DOWNSTREAM Or33a
2R	3186094	2R_3186094_SNP [dm3] 2R_7298589_SNP [dm6]	T	C	2.013e^-4	0.809	INTRON pwn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17564102	3L_17564102_SNP [dm3] 3L_17571002_SNP [dm6]	A	T	2.015e^-4	0.809	INTRON Eip74EF	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11763806	2L_11763806_SNP [dm3] 2L_11763806_SNP [dm6]	T	G	2.018e^-4	0.809	INTERGENIC
3R	26871557	3R_26871557_SNP [dm3] 3R_31045835_SNP [dm6]	T	G	2.020e^-4	0.809	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
3R	13558077	3R_13558077_SNP [dm3] 3R_17732355_SNP [dm6]	T	C	2.020e^-4	0.809	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	22020566	2L_22020566_SNP [dm3] 2L_22020566_SNP [dm6]	A	G	2.020e^-4	0.809	DOWNSTREAM CR33987 INTRON tio
2L	5993742	2L_5993742_SNP [dm3] 2L_5993742_SNP [dm6]	A	G	2.029e^-4	0.809	SYNONYMOUS_CODING lid	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10261517	X_10261517_SNP [dm3] X_10367484_SNP [dm6]	T	A	2.031e^-4	0.809	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_ttk mE1_TFBS_Ubx
3R	23882014	3R_23882014_SNP [dm3] 3R_28056292_SNP [dm6]	G	C	2.032e^-4	0.809	INTRON CG34362
2R	458975	2R_458975_INS [dm3] 2R_4571470_INS [dm6]	C	CACGCCCGTCGCAGGCGCC...	2.032e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12966453	2R_12966453_SNP [dm3] 2R_17078948_SNP [dm6]	A	C	2.033e^-4	0.809	INTRON CG30460
2R	14147972	2R_14147972_DEL [dm3] 2R_18260467_DEL [dm6]	GA	G	2.037e^-4	0.809	INTERGENIC
2L	10504045	2L_10504045_SNP [dm3] 2L_10504045_SNP [dm6]	T	C	2.037e^-4	0.809	INTRON Myo31DF
3L	5769021	3L_5769021_SNP [dm3] 3L_5775921_SNP [dm6]	C	T	2.049e^-4	0.809	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
3R	20016975	3R_20016975_SNP [dm3] 3R_24191253_SNP [dm6]	C	A	2.050e^-4	0.809	SYNONYMOUS_CODING jnj
2L	15363129	2L_15363129_SNP [dm3] 2L_15363129_SNP [dm6]	A	T	2.050e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26062041	3R_26062041_SNP [dm3] 3R_30236319_SNP [dm6]	A	T	2.055e^-4	0.809	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11062215	2L_11062215_SNP [dm3] 2L_11062215_SNP [dm6]	T	C	2.057e^-4	0.809	INTRON Samuel	TF binding site mE1_TFBS_HSA
2L	2383841	2L_2383841_SNP [dm3] 2L_2383841_SNP [dm6]	G	A	2.070e^-4	0.809	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2383850	2L_2383850_SNP [dm3] 2L_2383850_SNP [dm6]	G	A	2.070e^-4	0.809	SYNONYMOUS_CODING CG9870 DOWNSTREAM Eogt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14222878	X_14222878_SNP [dm3] X_14328845_SNP [dm6]	A	T	2.070e^-4	0.809	INTRON dpr8
3L	8548947	3L_8548947_DEL [dm3] 3L_8555847_DEL [dm6]	ACA	A	2.071e^-4	0.809	UTR_5_PRIME rhea
3R	16498848	3R_16498848_SNP [dm3] 3R_20673126_SNP [dm6]	T	A	2.082e^-4	0.809	DOWNSTREAM Cpr92F INTERGENIC
3R	10001625	3R_10001625_SNP [dm3] 3R_14175903_SNP [dm6]	C	A	2.096e^-4	0.809	UTR_3_PRIME Dop1R1
X	6880226	X_6880226_SNP [dm3] X_6986193_SNP [dm6]	C	A	2.102e^-4	0.809	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	18390972	3R_18390972_SNP [dm3] 3R_22565250_SNP [dm6]	G	A	2.104e^-4	0.809	INTERGENIC
3L	7326123	3L_7326123_SNP [dm3] 3L_7333023_SNP [dm6]	A	G	2.114e^-4	0.809	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	2.114e^-4	0.809	NON_SYNONYMOUS_CODING jnj
2R	454697	2R_454697_SNP [dm3] 2R_4567192_SNP [dm6]	C	T	2.117e^-4	0.809	INTERGENIC	transposable element FlyBase
3R	25967081	3R_25967081_SNP [dm3] 3R_30141359_SNP [dm6]	C	A	2.129e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	19618891	3R_19618891_SNP [dm3] 3R_23793169_SNP [dm6]	G	A	2.138e^-4	0.809	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
2L	16821746	2L_16821746_SNP [dm3] 2L_16821746_SNP [dm6]	T	C	2.139e^-4	0.809	NON_SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
2R	14147985	2R_14147985_SNP [dm3] 2R_18260480_SNP [dm6]	C	T	2.142e^-4	0.809	INTERGENIC
2R	10816314	2R_10816314_SNP [dm3] 2R_14928809_SNP [dm6]	G	A	2.153e^-4	0.809	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	2.154e^-4	0.809	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	16987311	2L_16987311_SNP [dm3] 2L_16987311_SNP [dm6]	A	C	2.157e^-4	0.809	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
3R	24706749	3R_24706749_SNP [dm3] 3R_28881027_SNP [dm6]	G	A	2.167e^-4	0.809	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
3R	17555212	3R_17555212_SNP [dm3] 3R_21729490_SNP [dm6]	A	T	2.168e^-4	0.809	DOWNSTREAM CR43096 INTERGENIC
X	18719451	X_18719451_SNP [dm3] X_18825418_SNP [dm6]	G	C	2.178e^-4	0.809	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	2.182e^-4	0.809	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9390011	2L_9390011_SNP [dm3] 2L_9390011_SNP [dm6]	C	T	2.189e^-4	0.809	INTRON Shawl & 1 other
2L	21913638	2L_21913638_SNP [dm3] 2L_21913638_SNP [dm6]	A	G	2.192e^-4	0.809	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
3L	1174371	3L_1174371_SNP [dm3] 3L_1174371_SNP [dm6]	G	T	2.196e^-4	0.809	NON_SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad
3R	14149523	3R_14149523_SNP [dm3] 3R_18323801_SNP [dm6]	T	C	2.197e^-4	0.809	INTRON CG31235
3L	11702510	3L_11702510_SNP [dm3] 3L_11709410_SNP [dm6]	A	T	2.198e^-4	0.809	UTR_5_PRIME mtTFB1 UTR_3_PRIME Ccdc56 UPSTREAM CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17262320	X_17262320_SNP [dm3] X_17368287_SNP [dm6]	T	A	2.198e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	2.198e^-4	0.809	UPSTREAM CR44542 INTERGENIC
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	2.200e^-4	0.809	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	9117338	2R_9117338_SNP [dm3] 2R_13229833_SNP [dm6]	A	C	2.201e^-4	0.809	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	23776227	3L_23776227_SNP [dm3] 3L_23783127_SNP [dm6]	G	C	2.202e^-4	0.809	INTERGENIC
2L	12854994	2L_12854994_SNP [dm3] 2L_12854994_SNP [dm6]	A	T	2.213e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11330538	3L_11330538_SNP [dm3] 3L_11337438_SNP [dm6]	C	A	2.216e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_sens
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	2.222e^-4	0.809	UPSTREAM CG43244 INTERGENIC
X	1466219	X_1466219_INS [dm3] X_1572186_INS [dm6]	T	TT	2.235e^-4	0.809	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	10120740	X_10120740_INS [dm3] X_10226707_INS [dm6]	T	TG	2.239e^-4	0.809	UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
X	13333484	X_13333484_SNP [dm3] X_13439451_SNP [dm6]	A	G	2.239e^-4	0.809	INTERGENIC
2L	7357472	2L_7357472_SNP [dm3] 2L_7357472_SNP [dm6]	G	T	2.245e^-4	0.809	INTERGENIC
2L	11907119	2L_11907119_SNP [dm3] 2L_11907119_SNP [dm6]	T	A	2.245e^-4	0.809	INTRON Pde1c
3R	20017662	3R_20017662_SNP [dm3] 3R_24191940_SNP [dm6]	A	C	2.251e^-4	0.809	SYNONYMOUS_CODING jnj
X	18861556	X_18861556_SNP [dm3] X_18967523_SNP [dm6]	T	C	2.259e^-4	0.809	INTRON CG43759	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6698598	2L_6698598_SNP [dm3] 2L_6698598_SNP [dm6]	A	G	2.273e^-4	0.809	INTRON Tsp
2R	13598968	2R_13598968_SNP [dm3] 2R_17711463_SNP [dm6]	T	C	2.274e^-4	0.809	INTRON CG6424
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	2.274e^-4	0.809	UTR_3_PRIME sfl
3L	2854035	3L_2854035_SNP [dm3] 3L_2854035_SNP [dm6]	C	A	2.276e^-4	0.809	INTRON CG43444
2L	17958346	2L_17958346_SNP [dm3] 2L_17958346_SNP [dm6]	A	C	2.279e^-4	0.809	INTERGENIC
3R	25606079	3R_25606079_SNP [dm3] 3R_29780357_SNP [dm6]	T	C	2.283e^-4	0.809	UTR_5_PRIME fig INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16571187	2L_16571187_SNP [dm3] 2L_16571187_SNP [dm6]	C	T	2.283e^-4	0.809	INTRON CG42389
2R	473189	2R_473189_SNP [dm3] 2R_4585684_SNP [dm6]	A	C	2.285e^-4	0.809	INTERGENIC
2R	3188424	2R_3188424_SNP [dm3] 2R_7300919_SNP [dm6]	G	T	2.289e^-4	0.809	DOWNSTREAM pwn INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	3188426	2R_3188426_SNP [dm3] 2R_7300921_SNP [dm6]	T	C	2.289e^-4	0.809	DOWNSTREAM pwn INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3445369	2L_3445369_SNP [dm3] 2L_3445369_SNP [dm6]	A	G	2.290e^-4	0.809	UPSTREAM CG2772 INTERGENIC
X	17908787	X_17908787_SNP [dm3] X_18014754_SNP [dm6]	G	A	2.292e^-4	0.809	UPSTREAM Sh INTRON Sh
3L	5087351	3L_5087351_SNP [dm3] 3L_5087351_SNP [dm6]	T	C	2.292e^-4	0.809	INTERGENIC
3R	26075110	3R_26075110_SNP [dm3] 3R_30249388_SNP [dm6]	T	C	2.294e^-4	0.809	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens
3L	10230392	3L_10230392_SNP [dm3] 3L_10237292_SNP [dm6]	C	T	2.302e^-4	0.809	DOWNSTREAM CR44542 INTERGENIC
2R	3188656	2R_3188656_SNP [dm3] 2R_7301151_SNP [dm6]	T	C	2.308e^-4	0.809	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14862800	3R_14862800_SNP [dm3] 3R_19037078_SNP [dm6]	G	T	2.309e^-4	0.809	INTRON CG6026	TF binding site mE1_TFBS_inv
3R	15794844	3R_15794844_SNP [dm3] 3R_19969122_SNP [dm6]	C	A	2.312e^-4	0.809	INTRON Hs6st
2L	17263254	2L_17263254_SNP [dm3] 2L_17263254_SNP [dm6]	C	T	2.315e^-4	0.809	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2R	473131	2R_473131_SNP [dm3] 2R_4585626_SNP [dm6]	C	G	2.318e^-4	0.809	INTERGENIC
2L	2504837	2L_2504837_SNP [dm3] 2L_2504837_SNP [dm6]	C	A	2.324e^-4	0.809	INTERGENIC
2R	472625	2R_472625_SNP [dm3] 2R_4585120_SNP [dm6]	A	T	2.326e^-4	0.809	INTERGENIC	transposable element FlyBase
2L	9708661	2L_9708661_SNP [dm3] 2L_9708661_SNP [dm6]	T	C	2.332e^-4	0.809	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
2L	9558568	2L_9558568_SNP [dm3] 2L_9558568_SNP [dm6]	G	A	2.345e^-4	0.809	INTRON jp
2L	15321704	2L_15321704_SNP [dm3] 2L_15321704_SNP [dm6]	G	A	2.349e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15115860	3R_15115860_SNP [dm3] 3R_19290138_SNP [dm6]	T	A	2.349e^-4	0.809	DOWNSTREAM CR43451 INTERGENIC
2L	12498102	2L_12498102_DEL [dm3] 2L_12498102_DEL [dm6]	TT	T	2.351e^-4	0.809	UPSTREAM t-cup INTRON bun
2R	4819907	2R_4819907_SNP [dm3] 2R_8932402_SNP [dm6]	T	C	2.354e^-4	0.809	SYNONYMOUS_CODING PAN2
2L	3695718	2L_3695718_SNP [dm3] 2L_3695718_SNP [dm6]	T	C	2.362e^-4	0.809	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2R	459174	2R_459174_INS [dm3] 2R_4571669_INS [dm6]	A	ATTAAA	2.366e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_inv
X	16109270	X_16109270_SNP [dm3] X_16215237_SNP [dm6]	G	T	2.368e^-4	0.809	INTRON disco	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_Trl
3R	15754988	3R_15754988_SNP [dm3] 3R_19929266_SNP [dm6]	A	G	2.371e^-4	0.809	UPSTREAM CG4459 DOWNSTREAM Hs6st INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4490358	2L_4490358_SNP [dm3] 2L_4490358_SNP [dm6]	G	T	2.374e^-4	0.809	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9816324	3L_9816324_SNP [dm3] 3L_9823224_SNP [dm6]	T	C	2.374e^-4	0.809	DOWNSTREAM Ilp5 INTRON CG43897
2R	473191	2R_473191_SNP [dm3] 2R_4585686_SNP [dm6]	A	G	2.382e^-4	0.809	INTERGENIC
3L	4336253	3L_4336253_INS [dm3] 3L_4336253_INS [dm6]	T	TT	2.384e^-4	0.809	INTRON Cip4
2R	9137091	2R_9137091_SNP [dm3] 2R_13249586_SNP [dm6]	G	C	2.391e^-4	0.809	DOWNSTREAM Mp20 INTRON CG4712
2L	12498166	2L_12498166_SNP [dm3] 2L_12498166_SNP [dm6]	T	A	2.391e^-4	0.809	UPSTREAM t-cup INTRON bun
X	10260405	X_10260405_SNP [dm3] X_10366372_SNP [dm6]	T	A	2.393e^-4	0.809	UPSTREAM l_1_G0289 DOWNSTREAM CG32679 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	10140822	2R_10140822_SNP [dm3] 2R_14253317_SNP [dm6]	C	T	2.396e^-4	0.809	DOWNSTREAM Mdr50 INTRON Hsc70-5
2L	11062116	2L_11062116_DEL [dm3] 2L_11062116_DEL [dm6]	TT	T	2.402e^-4	0.809	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	455752	2R_455752_SNP [dm3] 2R_4568247_SNP [dm6]	G	T	2.402e^-4	0.809	INTERGENIC	transposable element FlyBase
3L	6068358	3L_6068358_SNP [dm3] 3L_6075258_SNP [dm6]	T	A	2.408e^-4	0.809	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	3188404	2R_3188404_SNP [dm3] 2R_7300899_SNP [dm6]	C	A	2.413e^-4	0.809	DOWNSTREAM pwn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	7454901	3L_7454901_SNP [dm3] 3L_7461801_SNP [dm6]	T	A	2.416e^-4	0.809	INTERGENIC
3R	13460341	3R_13460341_SNP [dm3] 3R_17634619_SNP [dm6]	C	T	2.418e^-4	0.809	INTRON CG43175
2R	437365	2R_437365_SNP [dm3] 2R_4549860_SNP [dm6]	C	T	2.426e^-4	0.809	INTRON Stlk	transposable element FlyBase
3R	25966378	3R_25966378_SNP [dm3] 3R_30140656_SNP [dm6]	G	A	2.430e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25966410	3R_25966410_SNP [dm3] 3R_30140688_SNP [dm6]	T	A	2.430e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2677376	2L_2677376_SNP [dm3] 2L_2677376_SNP [dm6]	A	T	2.432e^-4	0.809	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10140800	2R_10140800_SNP [dm3] 2R_14253295_SNP [dm6]	A	T	2.434e^-4	0.809	DOWNSTREAM Mdr50 INTRON Hsc70-5
3L	10230626	3L_10230626_SNP [dm3] 3L_10237526_SNP [dm6]	C	T	2.440e^-4	0.809	DOWNSTREAM CR44542 INTERGENIC
2L	7492720	2L_7492720_SNP [dm3] 2L_7492720_SNP [dm6]	A	T	2.441e^-4	0.809	INTRON Ziz
2L	15321695	2L_15321695_SNP [dm3] 2L_15321695_SNP [dm6]	C	T	2.442e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20374816	2R_20374816_SNP [dm3] 2R_24487293_SNP [dm6]	T	A	2.444e^-4	0.809	INTRON CG13579	TF binding site mE1_TFBS_cad
3R	10198552	3R_10198552_SNP [dm3] 3R_14372830_SNP [dm6]	G	T	2.447e^-4	0.809	UTR_5_PRIME NK7.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16709895	2L_16709895_SNP [dm3] 2L_16709895_SNP [dm6]	A	T	2.464e^-4	0.809	INTRON CG31808
2R	455155	2R_455155_SNP [dm3] 2R_4567650_SNP [dm6]	T	C	2.467e^-4	0.809	INTERGENIC	transposable element FlyBase
2R	10141709	2R_10141709_SNP [dm3] 2R_14254204_SNP [dm6]	G	A	2.468e^-4	0.809	SYNONYMOUS_CODING Hsc70-5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3572730	3L_3572730_SNP [dm3] 3L_3572730_SNP [dm6]	A	G	2.486e^-4	0.809	INTRON Eip63E
2R	8180029	2R_8180029_SNP [dm3] 2R_12292524_SNP [dm6]	G	A	2.486e^-4	0.809	INTRON CG42700
2L	5943640	2L_5943640_SNP [dm3] 2L_5943640_SNP [dm6]	G	C	2.493e^-4	0.809	UPSTREAM Gpdh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2L	12498105	2L_12498105_DEL [dm3] 2L_12498105_DEL [dm6]	TCA	T	2.499e^-4	0.809	UPSTREAM t-cup INTRON bun
3R	15995290	3R_15995290_SNP [dm3] 3R_20169568_SNP [dm6]	T	A	2.502e^-4	0.809	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25463714	3R_25463714_INS [dm3] 3R_29637992_INS [dm6]	G	GAGAG	2.507e^-4	0.809	INTRON Dop1R2
2L	11644533	2L_11644533_SNP [dm3] 2L_11644533_SNP [dm6]	A	C	2.508e^-4	0.809	DOWNSTREAM CG6614 INTERGENIC
2R	12275465	2R_12275465_SNP [dm3] 2R_16387960_SNP [dm6]	A	C	2.518e^-4	0.809	INTRON Sema-2b
2L	21913132	2L_21913132_SNP [dm3] 2L_21913132_SNP [dm6]	G	A	2.523e^-4	0.809	INTERGENIC	transposable element FlyBase
X	2004828	X_2004828_SNP [dm3] X_2110795_SNP [dm6]	T	C	2.528e^-4	0.809	SYNONYMOUS_CODING csw
X	14817489	X_14817489_DEL [dm3] X_14923456_DEL [dm6]	AA	A	2.539e^-4	0.809	UTR_5_PRIME CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11178183	X_11178183_SNP [dm3] X_11284150_SNP [dm6]	C	A	2.540e^-4	0.809	INTRON CG44422
3L	17750743	3L_17750743_SNP [dm3] 3L_17757643_SNP [dm6]	G	A	2.541e^-4	0.809	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	11317404	X_11317404_SNP [dm3] X_11423371_SNP [dm6]	T	C	2.544e^-4	0.809	UPSTREAM Gs2 INTRON Gs2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25967064	3R_25967064_SNP [dm3] 3R_30141342_SNP [dm6]	A	C	2.545e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo
2R	472473	2R_472473_INS [dm3] 2R_4584968_INS [dm6]	C	CGTCTAAATAC...	2.548e^-4	0.809	INTERGENIC	transposable element FlyBase
3R	15785108	3R_15785108_SNP [dm3] 3R_19959386_SNP [dm6]	A	G	2.551e^-4	0.809	INTRON Hs6st
X	14666161	X_14666161_SNP [dm3] X_14772128_SNP [dm6]	A	G	2.559e^-4	0.809	INTERGENIC
2L	18605134	2L_18605134_SNP [dm3] 2L_18605134_SNP [dm6]	T	A	2.563e^-4	0.809	START_GAINED CG10413 UTR_5_PRIME CG10413 UPSTREAM CG31789 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9833711	X_9833711_SNP [dm3] X_9939678_SNP [dm6]	A	C	2.575e^-4	0.809	INTERGENIC
3L	19833315	3L_19833315_SNP [dm3] 3L_19840215_SNP [dm6]	T	C	2.577e^-4	0.809	SYNONYMOUS_CODING kto	TF binding site mE1_TFBS_cad
2R	7392038	2R_7392038_SNP [dm3] 2R_11504533_SNP [dm6]	A	C	2.580e^-4	0.809	INTRON inv
2R	16727942	2R_16727942_SNP [dm3] 2R_20840437_SNP [dm6]	A	T	2.581e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
3R	20684698	3R_20684698_SNP [dm3] 3R_24858976_SNP [dm6]	T	A	2.585e^-4	0.809	DOWNSTREAM ppk22 & 1 other INTRON ppk22
2L	17855549	2L_17855549_DEL [dm3] 2L_17855549_DEL [dm6]	ATGAGTGAGTGCGTTAATAT...	A	2.586e^-4	0.809	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1910407	3R_1910407_SNP [dm3] 3R_6084685_SNP [dm6]	T	C	2.591e^-4	0.809	INTERGENIC
3R	2312229	3R_2312229_SNP [dm3] 3R_6486507_SNP [dm6]	T	C	2.595e^-4	0.809	UPSTREAM CG15186 INTRON CG15186
2L	1591117	2L_1591117_SNP [dm3] 2L_1591117_SNP [dm6]	T	A	2.596e^-4	0.809	INTRON haf
3R	26647393	3R_26647393_SNP [dm3] 3R_30821671_SNP [dm6]	A	G	2.601e^-4	0.809	UPSTREAM cindr INTRON cindr	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11911020	3L_11911020_SNP [dm3] 3L_11917920_SNP [dm6]	T	A	2.612e^-4	0.809	INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	505592	3L_505592_SNP [dm3] 3L_505592_SNP [dm6]	G	A	2.622e^-4	0.809	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8845132	2R_8845132_SNP [dm3] 2R_12957627_SNP [dm6]	G	C	2.652e^-4	0.809	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	13333485	X_13333485_SNP [dm3] X_13439452_SNP [dm6]	T	G	2.654e^-4	0.809	INTERGENIC
2R	15799429	2R_15799429_SNP [dm3] 2R_19911924_SNP [dm6]	C	G	2.657e^-4	0.809	UPSTREAM CR44573 INTERGENIC
2R	15881906	2R_15881906_DEL [dm3] 2R_19994401_DEL [dm6]	AGA	A	2.661e^-4	0.809	INTERGENIC
2L	1284517	2L_1284517_DEL [dm3] 2L_1284517_DEL [dm6]	GACATGG	G	2.665e^-4	0.809	INTRON robo3
3R	11757766	3R_11757766_SNP [dm3] 3R_15932044_SNP [dm6]	A	G	2.674e^-4	0.809	SYNONYMOUS_CODING CG4221 DOWNSTREAM CG5478	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6576524	3L_6576524_SNP [dm3] 3L_6583424_SNP [dm6]	T	A	2.675e^-4	0.809	INTRON CG18769 & 1 other
X	3436844	X_3436844_SNP [dm3] X_3542811_SNP [dm6]	G	T	2.678e^-4	0.809	INTRON CG32791
2R	10816315	2R_10816315_SNP [dm3] 2R_14928810_SNP [dm6]	T	G	2.684e^-4	0.809	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	5736427	2L_5736427_SNP [dm3] 2L_5736427_SNP [dm6]	A	G	2.685e^-4	0.809	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10583888	2R_10583888_SNP [dm3] 2R_14696383_SNP [dm6]	C	T	2.690e^-4	0.809	INTRON mspo
3R	25966369	3R_25966369_SNP [dm3] 3R_30140647_SNP [dm6]	G	A	2.690e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14646734	X_14646734_SNP [dm3] X_14752701_SNP [dm6]	C	T	2.690e^-4	0.809	INTERGENIC
3L	9339189	3L_9339189_SNP [dm3] 3L_9346089_SNP [dm6]	A	C	2.691e^-4	0.809	NON_SYNONYMOUS_CODING PGRP-LC INTRON PGRP-LC
3R	22887320	3R_22887320_SNP [dm3] 3R_27061598_SNP [dm6]	T	C	2.701e^-4	0.809	UPSTREAM CG34292 INTRON Nep5
3L	15825028	3L_15825028_SNP [dm3] 3L_15831928_SNP [dm6]	A	T	2.705e^-4	0.809	UTR_3_PRIME dbo UPSTREAM CG12713 DOWNSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
3R	18797016	3R_18797016_DEL [dm3] 3R_22971294_DEL [dm6]	CAGCTCAATAAAAAGTGTCA...	A	2.709e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19585638	2R_19585638_SNP [dm3] 2R_23698115_SNP [dm6]	C	A	2.714e^-4	0.809	UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	14660250	3R_14660250_SNP [dm3] 3R_18834528_SNP [dm6]	G	A	2.716e^-4	0.809	INTRON CG18208
2L	15380998	2L_15380998_SNP [dm3] 2L_15380998_SNP [dm6]	A	T	2.718e^-4	0.809	INTERGENIC
3R	9649040	3R_9649040_SNP [dm3] 3R_13823318_SNP [dm6]	A	G	2.721e^-4	0.809	INTERGENIC
X	20483563	X_20483563_INS [dm3] X_20612536_INS [dm6]	G	GTGATTTTGACATTTG...	2.724e^-4	0.809	INTRON RunxA
2R	414026	2R_414026_SNP [dm3] 2R_4526521_SNP [dm6]	C	T	2.728e^-4	0.809	INTERGENIC	transposable element FlyBase
2L	11940062	2L_11940062_SNP [dm3] 2L_11940062_SNP [dm6]	T	G	2.740e^-4	0.809	DOWNSTREAM Or33c INTERGENIC
2L	742803	2L_742803_INS [dm3] 2L_742803_INS [dm6]	A	ACATA	2.744e^-4	0.809	INTRON Eaat2
2L	7488764	2L_7488764_SNP [dm3] 2L_7488764_SNP [dm6]	C	T	2.751e^-4	0.809	INTRON Ziz
3R	11674181	3R_11674181_SNP [dm3] 3R_15848459_SNP [dm6]	A	G	2.774e^-4	0.809	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
3R	5373316	3R_5373316_SNP [dm3] 3R_9547594_SNP [dm6]	C	G	2.778e^-4	0.809	DOWNSTREAM CR42549 INTRON mura	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3705475	3L_3705475_SNP [dm3] 3L_3705475_SNP [dm6]	G	A	2.780e^-4	0.809	INTERGENIC
2L	12498132	2L_12498132_SNP [dm3] 2L_12498132_SNP [dm6]	A	C	2.787e^-4	0.809	UPSTREAM t-cup INTRON bun
2L	7566463	2L_7566463_INS [dm3] 2L_7566463_INS [dm6]	T	TAG	2.790e^-4	0.809	INTRON RapGAP1
2L	7566465	2L_7566465_SNP [dm3] 2L_7566465_SNP [dm6]	C	T	2.790e^-4	0.809	INTRON RapGAP1
2L	14418568	2L_14418568_SNP [dm3] 2L_14418568_SNP [dm6]	A	C	2.791e^-4	0.809	INTERGENIC
X	8597751	X_8597751_SNP [dm3] X_8703718_SNP [dm6]	T	A	2.794e^-4	0.809	INTERGENIC
3L	18975871	3L_18975871_SNP [dm3] 3L_18982771_SNP [dm6]	G	A	2.798e^-4	0.809	INTERGENIC
2L	16827597	2L_16827597_SNP [dm3] 2L_16827597_SNP [dm6]	A	C	2.805e^-4	0.809	UTR_5_PRIME CG31739 DOWNSTREAM mdy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
2L	258631	2L_258631_SNP [dm3] 2L_258631_SNP [dm6]	T	A	2.807e^-4	0.809	INTRON CG3645
X	7528359	X_7528359_SNP [dm3] X_7634326_SNP [dm6]	T	C	2.808e^-4	0.809	INTRON ct
X	5208441	X_5208441_SNP [dm3] X_5314408_SNP [dm6]	G	C	2.809e^-4	0.809	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	2.812e^-4	0.809	INTERGENIC
2R	7838631	2R_7838631_MNP [dm3] 2R_11951126_MNP [dm6]	CCA	GGT	2.821e^-4	0.809	INTRON CG13188
2R	10583865	2R_10583865_SNP [dm3] 2R_14696360_SNP [dm6]	G	A	2.826e^-4	0.809	INTRON mspo
X	18719403	X_18719403_SNP [dm3] X_18825370_SNP [dm6]	C	T	2.828e^-4	0.809	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10139899	2R_10139899_SNP [dm3] 2R_14252394_SNP [dm6]	A	G	2.830e^-4	0.809	UTR_3_PRIME Mdr50 DOWNSTREAM Hsc70-5
2R	473144	2R_473144_SNP [dm3] 2R_4585639_SNP [dm6]	A	T	2.830e^-4	0.809	INTERGENIC
2L	20571286	2L_20571286_SNP [dm3] 2L_20571286_SNP [dm6]	G	T	2.831e^-4	0.809	INTRON CR45347
2L	9708581	2L_9708581_SNP [dm3] 2L_9708581_SNP [dm6]	C	T	2.845e^-4	0.809	UTR_3_PRIME pelo DOWNSTREAM CG4364	TF binding site mE1_TFBS_HSA
3R	18196157	3R_18196157_SNP [dm3] 3R_22370435_SNP [dm6]	G	T	2.849e^-4	0.809	INTRON PyK
3R	14685483	3R_14685483_SNP [dm3] 3R_18859761_SNP [dm6]	C	T	2.851e^-4	0.809	INTERGENIC
3L	15645737	3L_15645737_SNP [dm3] 3L_15652637_SNP [dm6]	T	G	2.852e^-4	0.809	UPSTREAM Eig71Ec INTRON Eig71Ed
X	10185921	X_10185921_SNP [dm3] X_10291888_SNP [dm6]	T	C	2.857e^-4	0.809	INTRON alpha-Man-I
2L	19019177	2L_19019177_SNP [dm3] 2L_19019177_SNP [dm6]	T	G	2.863e^-4	0.809	DOWNSTREAM CR44184 INTERGENIC
3L	14994706	3L_14994706_SNP [dm3] 3L_15001606_SNP [dm6]	A	G	2.864e^-4	0.809	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
2R	19668069	2R_19668069_SNP [dm3] 2R_23780546_SNP [dm6]	A	C	2.865e^-4	0.809	INTRON CG9850
3L	11491950	3L_11491950_SNP [dm3] 3L_11498850_SNP [dm6]	A	G	2.866e^-4	0.809	UTR_3_PRIME chrb
2R	17394115	2R_17394115_INS [dm3] 2R_21506610_INS [dm6]	A	AGA	2.867e^-4	0.809	INTRON MESK2
3L	16079050	3L_16079050_SNP [dm3] 3L_16085950_SNP [dm6]	A	C	2.871e^-4	0.809	UTR_3_PRIME Taspase1 DOWNSTREAM CG13075
3L	2491812	3L_2491812_SNP [dm3] 3L_2491812_SNP [dm6]	T	A	2.872e^-4	0.809	SYNONYMOUS_CODING CG1146 INTRON CG45186	TF binding site mE1_TFBS_chinmo
3R	24988053	3R_24988053_SNP [dm3] 3R_29162331_SNP [dm6]	C	T	2.876e^-4	0.809	SYNONYMOUS_CODING CG11897
3L	18780666	3L_18780666_SNP [dm3] 3L_18787566_SNP [dm6]	T	G	2.877e^-4	0.809	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
3R	25603709	3R_25603709_SNP [dm3] 3R_29777987_SNP [dm6]	G	C	2.880e^-4	0.809	INTRON kay	TF binding site BDTNP1_TFBS_z
3L	16852036	3L_16852036_SNP [dm3] 3L_16858936_SNP [dm6]	G	T	2.886e^-4	0.809	UPSTREAM sinah DOWNSTREAM sina INTRON Rh4
2L	13745497	2L_13745497_SNP [dm3] 2L_13745497_SNP [dm6]	T	A	2.888e^-4	0.809	INTERGENIC
3R	25137741	3R_25137741_SNP [dm3] 3R_29312019_SNP [dm6]	C	T	2.890e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_sens
3R	25605407	3R_25605407_SNP [dm3] 3R_29779685_SNP [dm6]	A	G	2.891e^-4	0.809	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11259903	X_11259903_SNP [dm3] X_11365870_SNP [dm6]	T	G	2.899e^-4	0.809	INTRON hop
2L	1240364	2L_1240364_SNP [dm3] 2L_1240364_SNP [dm6]	G	T	2.904e^-4	0.809	SYNONYMOUS_CODING CG5397	TF binding site mE1_TFBS_chinmo
3L	6543510	3L_6543510_SNP [dm3] 3L_6550410_SNP [dm6]	T	A	2.907e^-4	0.809	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	2.909e^-4	0.809	INTERGENIC
2R	472275	2R_472275_SNP [dm3] 2R_4584770_SNP [dm6]	G	T	2.911e^-4	0.809	INTERGENIC
2L	15380985	2L_15380985_SNP [dm3] 2L_15380985_SNP [dm6]	T	A	2.911e^-4	0.809	INTERGENIC
2L	7492645	2L_7492645_SNP [dm3] 2L_7492645_SNP [dm6]	C	A	2.915e^-4	0.809	INTRON Ziz
3R	20138648	3R_20138648_SNP [dm3] 3R_24312926_SNP [dm6]	A	C	2.921e^-4	0.809	INTRON crb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	9355452	2L_9355452_DEL [dm3] 2L_9355452_DEL [dm6]	CACGA	T	2.927e^-4	0.809	INTERGENIC
2R	473127	2R_473127_SNP [dm3] 2R_4585622_SNP [dm6]	A	T	2.928e^-4	0.809	INTERGENIC
2R	14357003	2R_14357003_SNP [dm3] 2R_18469498_SNP [dm6]	T	G	2.958e^-4	0.809	SPLICE_SITE_REGION CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20344519	X_20344519_SNP [dm3] X_20473492_SNP [dm6]	C	A	2.965e^-4	0.809	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13333575	X_13333575_SNP [dm3] X_13439542_SNP [dm6]	C	T	2.970e^-4	0.809	INTERGENIC
2L	17962697	2L_17962697_SNP [dm3] 2L_17962697_SNP [dm6]	T	C	2.975e^-4	0.809	UTR_3_PRIME btv UPSTREAM CG5674	TF binding site mE1_TFBS_bab1 mE1_TFBS_sbb
3R	27067606	3R_27067606_SNP [dm3] 3R_31241884_SNP [dm6]	T	G	2.978e^-4	0.809	INTRON qless
3R	2734884	3R_2734884_SNP [dm3] 3R_6909162_SNP [dm6]	T	C	2.979e^-4	0.809	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18422174	3R_18422174_SNP [dm3] 3R_22596452_SNP [dm6]	G	A	2.986e^-4	0.809	INTRON Efa6
X	14499345	X_14499345_SNP [dm3] X_14605312_SNP [dm6]	T	C	2.992e^-4	0.809	INTRON NetA
3L	13114944	3L_13114944_SNP [dm3] 3L_13121844_SNP [dm6]	A	T	2.992e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16401153	2L_16401153_SNP [dm3] 2L_16401153_SNP [dm6]	T	G	2.994e^-4	0.809	INTRON CG5888
2R	16615155	2R_16615155_SNP [dm3] 2R_20727650_SNP [dm6]	A	G	2.998e^-4	0.809	DOWNSTREAM CG13442 INTRON dpr	TF binding site mE1_TFBS_chinmo
3R	16830066	3R_16830066_SNP [dm3] 3R_21004344_SNP [dm6]	T	G	3.002e^-4	0.809	DOWNSTREAM CG10827 INTRON Calx
2L	4564356	2L_4564356_SNP [dm3] 2L_4564356_SNP [dm6]	T	C	3.003e^-4	0.809	INTRON dp	TF binding site mE1_TFBS_cad
2L	4553274	2L_4553274_SNP [dm3] 2L_4553274_SNP [dm6]	G	A	3.005e^-4	0.809	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5569100	3L_5569100_SNP [dm3] 3L_5576000_SNP [dm6]	C	A	3.009e^-4	0.809	UPSTREAM Msr-110 INTRON Msr-110
2L	12697127	2L_12697127_SNP [dm3] 2L_12697127_SNP [dm6]	G	A	3.010e^-4	0.809	NON_SYNONYMOUS_CODING CG5781 INTRON PICK1	TF binding site mE1_TFBS_cad
2L	2782862	2L_2782862_SNP [dm3] 2L_2782862_SNP [dm6]	G	A	3.010e^-4	0.809	UTR_3_PRIME Syt1 INTRON Syt1
2R	11721304	2R_11721304_SNP [dm3] 2R_15833799_SNP [dm6]	A	G	3.013e^-4	0.809	INTRON tun & 1 other	regulatory region REDfly_CRMs
3R	21668165	3R_21668165_SNP [dm3] 3R_25842443_SNP [dm6]	A	C	3.017e^-4	0.809	NON_SYNONYMOUS_CODING alpha4GT2
2R	401630	2R_401630_SNP [dm3] 2R_4514125_SNP [dm6]	C	G	3.026e^-4	0.809	INTERGENIC	transposable element FlyBase
3R	23488331	3R_23488331_SNP [dm3] 3R_27662609_SNP [dm6]	T	G	3.030e^-4	0.809	INTRON unc80
2R	455072	2R_455072_SNP [dm3] 2R_4567567_SNP [dm6]	T	C	3.033e^-4	0.809	INTERGENIC	transposable element FlyBase
2R	403055	2R_403055_INS [dm3] 2R_4515550_INS [dm6]	G	GA	3.042e^-4	0.809	UTR_3_PRIME RpL38 DOWNSTREAM RpL38	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z
2R	13629952	2R_13629952_SNP [dm3] 2R_17742447_SNP [dm6]	T	A	3.065e^-4	0.809	INTRON CG4996
3R	14834856	3R_14834856_DEL [dm3] 3R_19009134_DEL [dm6]	CT	C	3.066e^-4	0.809	INTRON gukh
3R	11140667	3R_11140667_SNP [dm3] 3R_15314945_SNP [dm6]	G	T	3.066e^-4	0.809	UTR_3_PRIME Tm2 DOWNSTREAM Tm2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	473122	2R_473122_SNP [dm3] 2R_4585617_SNP [dm6]	C	G	3.067e^-4	0.809	INTERGENIC
2R	473124	2R_473124_INS [dm3] 2R_4585619_INS [dm6]	G	GGACATGGAAGTTCCTCAAG...	3.067e^-4	0.809	INTERGENIC
3R	17116277	3R_17116277_SNP [dm3] 3R_21290555_SNP [dm6]	T	C	3.072e^-4	0.809	INTRON SIFaR
X	13333512	X_13333512_SNP [dm3] X_13439479_SNP [dm6]	A	T	3.073e^-4	0.809	INTERGENIC
3L	11501327	3L_11501327_SNP [dm3] 3L_11508227_SNP [dm6]	T	G	3.075e^-4	0.809	UPSTREAM CG33500 DOWNSTREAM Sgs8 INTERGENIC
2R	13213176	2R_13213176_SNP [dm3] 2R_17325671_SNP [dm6]	C	T	3.080e^-4	0.809	INTRON mbl
3L	9337298	3L_9337298_INS [dm3] 3L_9344198_INS [dm6]	G	GACTTGTGTTTT...	3.081e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
X	5237966	X_5237966_SNP [dm3] X_5343933_SNP [dm6]	T	C	3.085e^-4	0.809	INTRON SK
2R	7834856	2R_7834856_SNP [dm3] 2R_11947351_SNP [dm6]	G	A	3.085e^-4	0.809	INTRON CG13188
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	3.086e^-4	0.809	UTR_5_PRIME Wnt10
X	907284	X_907284_SNP [dm3] X_1013251_SNP [dm6]	C	G	3.096e^-4	0.809	UTR_5_PRIME su_w[a]_ DOWNSTREAM CG14631 & 1 other
2R	14990262	2R_14990262_SNP [dm3] 2R_19102757_SNP [dm6]	G	C	3.096e^-4	0.809	INTRON 5-HT1A
X	14813943	X_14813943_SNP [dm3] X_14919910_SNP [dm6]	G	T	3.097e^-4	0.809	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
3L	10534952	3L_10534952_INS [dm3] 3L_10541852_INS [dm6]	A	ACATA	3.097e^-4	0.809	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	1033400	3L_1033400_SNP [dm3] 3L_1033400_SNP [dm6]	G	T	3.097e^-4	0.809	INTRON trio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6238697	2L_6238697_SNP [dm3] 2L_6238697_SNP [dm6]	C	G	3.099e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	16074063	3L_16074063_SNP [dm3] 3L_16080963_SNP [dm6]	G	A	3.107e^-4	0.809	UTR_3_PRIME Mbs
2R	13328876	2R_13328876_SNP [dm3] 2R_17441371_SNP [dm6]	T	A	3.113e^-4	0.809	INTRON EDTP & 1 other
3R	13420968	3R_13420968_SNP [dm3] 3R_17595246_SNP [dm6]	G	A	3.115e^-4	0.809	UPSTREAM Sgs5 DOWNSTREAM CG7587 INTERGENIC
X	14464204	X_14464204_MNP [dm3] X_14570171_MNP [dm6]	CTTATTAGGAG...	GAGCAATCTTC...	3.116e^-4	0.809	INTERGENIC
3L	2736922	3L_2736922_SNP [dm3] 3L_2736922_SNP [dm6]	A	C	3.124e^-4	0.809	INTRON Mrtf
X	10259391	X_10259391_SNP [dm3] X_10365358_SNP [dm6]	C	A	3.124e^-4	0.809	INTRON l_1_G0289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13598928	2R_13598928_SNP [dm3] 2R_17711423_SNP [dm6]	T	G	3.125e^-4	0.809	INTRON CG6424
3L	4673805	3L_4673805_SNP [dm3] 3L_4673805_SNP [dm6]	G	T	3.130e^-4	0.809	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20434601	2R_20434601_SNP [dm3] 2R_24547078_SNP [dm6]	A	T	3.135e^-4	0.809	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8314042	2L_8314042_SNP [dm3] 2L_8314042_SNP [dm6]	T	G	3.136e^-4	0.809	SYNONYMOUS_CODING CG7806
3R	20138679	3R_20138679_SNP [dm3] 3R_24312957_SNP [dm6]	T	C	3.137e^-4	0.809	INTRON crb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	5007471	2L_5007471_SNP [dm3] 2L_5007471_SNP [dm6]	G	A	3.158e^-4	0.809	UPSTREAM Rtnl1 INTRON Rtnl1
2R	5814960	2R_5814960_SNP [dm3] 2R_9927455_SNP [dm6]	C	T	3.166e^-4	0.809	INTRON Mef2
2L	17896464	2L_17896464_SNP [dm3] 2L_17896464_SNP [dm6]	A	G	3.176e^-4	0.809	INTERGENIC
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	3.186e^-4	0.809	INTERGENIC
3L	16081939	3L_16081939_SNP [dm3] 3L_16088839_SNP [dm6]	G	A	3.187e^-4	0.809	SYNONYMOUS_CODING CG5235	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9822232	3L_9822232_SNP [dm3] 3L_9829132_SNP [dm6]	T	A	3.187e^-4	0.809	UPSTREAM CG43897 INTRON CG43897
2R	9768813	2R_9768813_SNP [dm3] 2R_13881308_SNP [dm6]	C	A	3.190e^-4	0.809	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1410797	3L_1410797_SNP [dm3] 3L_1410797_SNP [dm6]	G	A	3.200e^-4	0.809	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	14464201	X_14464201_SNP [dm3] X_14570168_SNP [dm6]	A	G	3.201e^-4	0.809	INTERGENIC
3R	17555337	3R_17555337_INS [dm3] 3R_21729615_INS [dm6]	G	GCCCACCTTCACTTTGGTGC...	3.206e^-4	0.809	EXON CR43096
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	3.206e^-4	0.809	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19107402	2L_19107402_INS [dm3] 2L_19107402_INS [dm6]	T	TT	3.214e^-4	0.809	UTR_5_PRIME Lim3 INTRON Lim3
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	3.217e^-4	0.809	INTERGENIC
3R	27067603	3R_27067603_DEL [dm3] 3R_31241881_DEL [dm6]	TC	T	3.228e^-4	0.809	INTRON qless
X	18237802	X_18237802_SNP [dm3] X_18343769_SNP [dm6]	T	C	3.229e^-4	0.809	INTRON CG6123	TF binding site mE1_TFBS_chinmo
2L	9146888	2L_9146888_SNP [dm3] 2L_9146888_SNP [dm6]	T	G	3.244e^-4	0.809	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3480997	3L_3480997_SNP [dm3] 3L_3480997_SNP [dm6]	T	G	3.246e^-4	0.809	INTRON CG42324
3L	15877109	3L_15877109_SNP [dm3] 3L_15884009_SNP [dm6]	T	C	3.252e^-4	0.809	DOWNSTREAM CR44050 INTRON pHCl
2R	410310	2R_410310_SNP [dm3] 2R_4522805_SNP [dm6]	C	T	3.253e^-4	0.809	INTERGENIC	transposable element FlyBase
3L	14682271	3L_14682271_INS [dm3] 3L_14689171_INS [dm6]	T	TA	3.253e^-4	0.809	INTRON ome
3L	14682274	3L_14682274_SNP [dm3] 3L_14689174_SNP [dm6]	T	A	3.253e^-4	0.809	INTRON ome
2R	14021974	2R_14021974_SNP [dm3] 2R_18134469_SNP [dm6]	G	A	3.256e^-4	0.809	UTR_5_PRIME Hsf UPSTREAM Pcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5208428	X_5208428_SNP [dm3] X_5314395_SNP [dm6]	T	C	3.265e^-4	0.809	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10881014	3L_10881014_DEL [dm3] 3L_10887914_DEL [dm6]	ATACA	A	3.271e^-4	0.809	INTERGENIC
2R	19966388	2R_19966388_SNP [dm3] 2R_24078865_SNP [dm6]	T	G	3.271e^-4	0.809	SYNONYMOUS_CODING CG10339 DOWNSTREAM Mlp60A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	3.274e^-4	0.809	INTRON Oamb
X	10185840	X_10185840_SNP [dm3] X_10291807_SNP [dm6]	G	T	3.275e^-4	0.809	INTRON alpha-Man-I
X	10186005	X_10186005_SNP [dm3] X_10291972_SNP [dm6]	C	G	3.278e^-4	0.809	INTRON alpha-Man-I
2L	4554215	2L_4554215_INS [dm3] 2L_4554215_INS [dm6]	A	AT	3.283e^-4	0.809	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2834652	3L_2834652_SNP [dm3] 3L_2834652_SNP [dm6]	G	A	3.288e^-4	0.809	INTRON CG43444
3R	17711493	3R_17711493_SNP [dm3] 3R_21885771_SNP [dm6]	A	G	3.289e^-4	0.809	SYNONYMOUS_CODING dnd UPSTREAM CG17819	TF binding site BDTNP1_TFBS_twi
3L	9818570	3L_9818570_SNP [dm3] 3L_9825470_SNP [dm6]	A	T	3.294e^-4	0.809	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9967246	3L_9967246_SNP [dm3] 3L_9974146_SNP [dm6]	A	G	3.297e^-4	0.809	UPSTREAM dpr6 DOWNSTREAM vnc & 1 other INTERGENIC
2L	21913494	2L_21913494_SNP [dm3] 2L_21913494_SNP [dm6]	A	G	3.299e^-4	0.809	DOWNSTREAM CG31600 INTERGENIC	transposable element FlyBase
2L	7488773	2L_7488773_SNP [dm3] 2L_7488773_SNP [dm6]	A	C	3.301e^-4	0.809	INTRON Ziz
2L	5562091	2L_5562091_SNP [dm3] 2L_5562091_SNP [dm6]	A	G	3.302e^-4	0.809	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2L	16709883	2L_16709883_SNP [dm3] 2L_16709883_SNP [dm6]	T	A	3.307e^-4	0.809	INTRON CG31808
2R	14488647	2R_14488647_SNP [dm3] 2R_18601142_SNP [dm6]	G	A	3.311e^-4	0.809	INTRON GEFmeso
3L	5098484	3L_5098484_SNP [dm3] 3L_5098484_SNP [dm6]	A	C	3.320e^-4	0.809	EXON CR34047
X	5237938	X_5237938_INS [dm3] X_5343905_INS [dm6]	C	CATAC	3.324e^-4	0.809	INTRON SK
2L	22021375	2L_22021375_SNP [dm3] 2L_22021375_SNP [dm6]	A	G	3.328e^-4	0.809	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11937912	X_11937912_SNP [dm3] X_12043879_SNP [dm6]	T	C	3.342e^-4	0.809	UTR_5_PRIME Ten-a EXON CR43960
X	9107571	X_9107571_SNP [dm3] X_9213538_SNP [dm6]	T	C	3.346e^-4	0.809	INTERGENIC
3L	2749204	3L_2749204_SNP [dm3] 3L_2749204_SNP [dm6]	A	G	3.348e^-4	0.809	INTRON Mrtf
2R	19484299	2R_19484299_SNP [dm3] 2R_23596776_SNP [dm6]	G	A	3.349e^-4	0.809	NON_SYNONYMOUS_CODING apt INTRON apt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3576597	2R_3576597_SNP [dm3] 2R_7689092_SNP [dm6]	G	T	3.351e^-4	0.809	INTRON CG1399
2R	15228235	2R_15228235_SNP [dm3] 2R_19340730_SNP [dm6]	G	C	3.356e^-4	0.809	INTRON Rgk1
X	908571	X_908571_DEL [dm3] X_1014538_DEL [dm6]	GCTATGCAG	G	3.359e^-4	0.809	UTR_3_PRIME CG11638 INTRON su_w[a]_
2L	6809091	2L_6809091_SNP [dm3] 2L_6809091_SNP [dm6]	G	A	3.369e^-4	0.809	INTERGENIC
3R	13656734	3R_13656734_INS [dm3] 3R_17831012_INS [dm6]	T	TG	3.371e^-4	0.809	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25967052	3R_25967052_SNP [dm3] 3R_30141330_SNP [dm6]	A	G	3.380e^-4	0.809	INTRON AdoR	TF binding site mE1_TFBS_chinmo
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	3.392e^-4	0.809	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	21926543	2L_21926543_SNP [dm3] 2L_21926543_SNP [dm6]	G	A	3.395e^-4	0.809	INTERGENIC
2R	10140812	2R_10140812_SNP [dm3] 2R_14253307_SNP [dm6]	G	T	3.399e^-4	0.809	DOWNSTREAM Mdr50 INTRON Hsc70-5
2R	10816349	2R_10816349_INS [dm3] 2R_14928844_INS [dm6]	T	TAGTTCATT	3.400e^-4	0.809	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21061321	2L_21061321_SNP [dm3] 2L_21061321_SNP [dm6]	T	G	3.404e^-4	0.809	INTRON CG9265
X	14464193	X_14464193_DEL [dm3] X_14570160_DEL [dm6]	TC	T	3.405e^-4	0.809	INTERGENIC
2R	6079714	2R_6079714_SNP [dm3] 2R_10192209_SNP [dm6]	A	T	3.409e^-4	0.809	UTR_5_PRIME KCNQ	TF binding site mE1_TFBS_inv
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	3.411e^-4	0.809	INTRON alpha-Man-I
X	20521928	X_20521928_DEL [dm3] X_20650901_DEL [dm6]	AAATCGATG	A	3.411e^-4	0.809	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8234231	2L_8234231_SNP [dm3] 2L_8234231_SNP [dm6]	G	T	3.415e^-4	0.809	INTRON Pvr
2L	11066025	2L_11066025_SNP [dm3] 2L_11066025_SNP [dm6]	C	A	3.416e^-4	0.809	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20074148	2L_20074148_INS [dm3] 2L_20074148_INS [dm6]	A	AA	3.419e^-4	0.809	DOWNSTREAM bwa INTRON pr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4479983	2L_4479983_SNP [dm3] 2L_4479983_SNP [dm6]	T	A	3.424e^-4	0.809	SYNONYMOUS_CODING dp
3L	12263187	3L_12263187_SNP [dm3] 3L_12270087_SNP [dm6]	A	T	3.425e^-4	0.809	UTR_3_PRIME Pbgs DOWNSTREAM CG32100
3L	2990353	3L_2990353_DEL [dm3] 3L_2990353_DEL [dm6]	TA	C	3.440e^-4	0.809	INTERGENIC
2R	7833331	2R_7833331_SNP [dm3] 2R_11945826_SNP [dm6]	T	A	3.447e^-4	0.809	INTRON CG13188
2R	3659310	2R_3659310_SNP [dm3] 2R_7771805_SNP [dm6]	C	G	3.460e^-4	0.809	INTRON CG30497 & 1 other
3R	26179411	3R_26179411_SNP [dm3] 3R_30353689_SNP [dm6]	G	C	3.461e^-4	0.809	INTRON hdc
3L	11330484	3L_11330484_SNP [dm3] 3L_11337384_SNP [dm6]	G	A	3.468e^-4	0.809	INTERGENIC	TF binding site mE1_TFBS_sens
3L	16921378	3L_16921378_SNP [dm3] 3L_16928278_SNP [dm6]	T	C	3.480e^-4	0.809	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
X	10228789	X_10228789_SNP [dm3] X_10334756_SNP [dm6]	C	T	3.481e^-4	0.809	INTRON CG43740	TF binding site mE1_TFBS_HSA
3L	7743858	3L_7743858_SNP [dm3] 3L_7750758_SNP [dm6]	C	A	3.481e^-4	0.809	DOWNSTREAM CG13685 INTRON CG32373
3R	19849406	3R_19849406_SNP [dm3] 3R_24023684_SNP [dm6]	G	A	3.486e^-4	0.809	INTRON KrT95D
2R	17428465	2R_17428465_SNP [dm3] 2R_21540960_SNP [dm6]	T	C	3.488e^-4	0.809	UPSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1505322	2L_1505322_SNP [dm3] 2L_1505322_SNP [dm6]	C	T	3.491e^-4	0.809	INTERGENIC
2R	18232276	2R_18232276_SNP [dm3] 2R_22344771_SNP [dm6]	C	G	3.500e^-4	0.809	NON_SYNONYMOUS_CODING Liprin-gamma	TF binding site mE1_TFBS_chinmo
2L	17860676	2L_17860676_SNP [dm3] 2L_17860676_SNP [dm6]	G	C	3.504e^-4	0.809	INTRON CadN2
2L	17935464	2L_17935464_DEL [dm3] 2L_17935464_DEL [dm6]	CAGCTCTCTGTTGC...	C	3.504e^-4	0.809	INTERGENIC
X	14464197	X_14464197_SNP [dm3] X_14570164_SNP [dm6]	A	G	3.506e^-4	0.809	INTERGENIC
2R	20366948	2R_20366948_SNP [dm3] 2R_24479425_SNP [dm6]	C	G	3.508e^-4	0.809	INTRON CG13579
3R	22192679	3R_22192679_SNP [dm3] 3R_26366957_SNP [dm6]	A	G	3.509e^-4	0.809	INTERGENIC
2L	20060852	2L_20060852_SNP [dm3] 2L_20060852_SNP [dm6]	A	G	3.520e^-4	0.809	START_GAINED barr UTR_5_PRIME barr UPSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	20069663	2L_20069663_SNP [dm3] 2L_20069663_SNP [dm6]	A	T	3.531e^-4	0.809	UPSTREAM CR44907 DOWNSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	8979964	3L_8979964_SNP [dm3] 3L_8986864_SNP [dm6]	A	G	3.534e^-4	0.809	UTR_5_PRIME CG5068 UPSTREAM Galk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	8166551	X_8166551_SNP [dm3] X_8272518_SNP [dm6]	T	C	3.536e^-4	0.809	NON_SYNONYMOUS_CODING CG15343 UPSTREAM CG1636 DOWNSTREAM CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8955336	3L_8955336_SNP [dm3] 3L_8962236_SNP [dm6]	G	A	3.538e^-4	0.809	SYNONYMOUS_CODING CG5660
X	3548353	X_3548353_SNP [dm3] X_3654320_SNP [dm6]	C	T	3.538e^-4	0.809	INTRON AstA-R1
3R	14319689	3R_14319689_SNP [dm3] 3R_18493967_SNP [dm6]	C	T	3.544e^-4	0.809	INTRON fru
3R	26870778	3R_26870778_SNP [dm3] 3R_31045056_SNP [dm6]	G	A	3.547e^-4	0.809	NON_SYNONYMOUS_CODING CG33920 INTRON CanA1
2L	5942852	2L_5942852_SNP [dm3] 2L_5942852_SNP [dm6]	T	A	3.549e^-4	0.809	SYNONYMOUS_CODING Sfp26Ad UPSTREAM Gpdh DOWNSTREAM CR45289
2R	12635716	2R_12635716_SNP [dm3] 2R_16748211_SNP [dm6]	G	A	3.550e^-4	0.809	SYNONYMOUS_CODING Acp53C14a DOWNSTREAM Acp53C14b
3L	7274611	3L_7274611_SNP [dm3] 3L_7281511_SNP [dm6]	T	C	3.553e^-4	0.809	INTRON unc-13-4A
2L	16709913	2L_16709913_SNP [dm3] 2L_16709913_SNP [dm6]	T	C	3.556e^-4	0.809	INTRON CG31808
2L	4325329	2L_4325329_SNP [dm3] 2L_4325329_SNP [dm6]	T	C	3.557e^-4	0.809	INTRON CG16857
X	6623910	X_6623910_SNP [dm3] X_6729877_SNP [dm6]	T	A	3.560e^-4	0.809	INTRON CG3168
3R	10206059	3R_10206059_SNP [dm3] 3R_14380337_SNP [dm6]	T	A	3.561e^-4	0.809	DOWNSTREAM soti INTERGENIC
X	8288322	X_8288322_SNP [dm3] X_8394289_SNP [dm6]	A	C	3.561e^-4	0.809	INTERGENIC
3L	9336962	3L_9336962_SNP [dm3] 3L_9343862_SNP [dm6]	C	T	3.565e^-4	0.809	UPSTREAM PGRP-LC INTRON PGRP-LC
X	16826262	X_16826262_SNP [dm3] X_16932229_SNP [dm6]	G	A	3.567e^-4	0.809	INTRON CG4928
3L	1692281	3L_1692281_SNP [dm3] 3L_1692281_SNP [dm6]	C	T	3.569e^-4	0.809	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19728331	2R_19728331_SNP [dm3] 2R_23840808_SNP [dm6]	C	T	3.573e^-4	0.809	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
3R	13678658	3R_13678658_SNP [dm3] 3R_17852936_SNP [dm6]	T	A	3.577e^-4	0.809	INTRON tinc
3R	19096070	3R_19096070_SNP [dm3] 3R_23270348_SNP [dm6]	A	G	3.578e^-4	0.809	UPSTREAM orb INTRON orb
3R	12698117	3R_12698117_SNP [dm3] 3R_16872395_SNP [dm6]	C	T	3.580e^-4	0.809	INTRON iab-8
2R	14022685	2R_14022685_SNP [dm3] 2R_18135180_SNP [dm6]	T	A	3.595e^-4	0.81	UPSTREAM Pcl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10199048	3R_10199048_SNP [dm3] 3R_14373326_SNP [dm6]	T	C	3.604e^-4	0.81	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10816307	2R_10816307_DEL [dm3] 2R_14928802_DEL [dm6]	ATCTA	G	3.605e^-4	0.81	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13366739	3L_13366739_SNP [dm3] 3L_13373639_SNP [dm6]	T	A	3.614e^-4	0.81	INTERGENIC
3L	6067861	3L_6067861_SNP [dm3] 3L_6074761_SNP [dm6]	G	A	3.615e^-4	0.81	SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10554116	3R_10554116_DEL [dm3] 3R_14728394_DEL [dm6]	AGACATTCGTTAAGA...	G	3.615e^-4	0.81	INTRON CG7530
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	3.616e^-4	0.81	INTRON sfl
3R	20554215	3R_20554215_SNP [dm3] 3R_24728493_SNP [dm6]	A	G	3.628e^-4	0.811	INTRON tok
2L	5943181	2L_5943181_SNP [dm3] 2L_5943181_SNP [dm6]	C	G	3.629e^-4	0.811	UPSTREAM Gpdh DOWNSTREAM CR45289 INTRON Sfp26Ad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	2413582	2L_2413582_SNP [dm3] 2L_2413582_SNP [dm6]	G	A	3.636e^-4	0.812	INTRON CG18641
3R	17722784	3R_17722784_SNP [dm3] 3R_21897062_SNP [dm6]	T	C	3.646e^-4	0.812	INTRON CG6678
3R	10763108	3R_10763108_DEL [dm3] 3R_14937386_DEL [dm6]	CC	C	3.648e^-4	0.812	INTERGENIC
3L	6793964	3L_6793964_SNP [dm3] 3L_6800864_SNP [dm6]	G	T	3.672e^-4	0.816	INTERGENIC
3R	15664478	3R_15664478_SNP [dm3] 3R_19838756_SNP [dm6]	T	C	3.675e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
X	6890480	X_6890480_SNP [dm3] X_6996447_SNP [dm6]	G	C	3.683e^-4	0.816	INTRON Inx7 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	7433272	X_7433272_SNP [dm3] X_7539239_SNP [dm6]	T	A	3.685e^-4	0.816	INTRON CG32719
2R	14045660	2R_14045660_SNP [dm3] 2R_18158155_SNP [dm6]	T	A	3.688e^-4	0.816	START_GAINED lolal UTR_5_PRIME lolal UPSTREAM CG10914 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	19097107	2L_19097107_SNP [dm3] 2L_19097107_SNP [dm6]	A	T	3.701e^-4	0.818	INTRON Lim3
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	3.710e^-4	0.819	INTERGENIC
X	10260956	X_10260956_SNP [dm3] X_10366923_SNP [dm6]	C	T	3.713e^-4	0.819	NON_SYNONYMOUS_CODING CG32679 UPSTREAM l_1_G0289	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	4483562	3L_4483562_SNP [dm3] 3L_4483562_SNP [dm6]	G	T	3.727e^-4	0.819	SYNONYMOUS_CODING CG11350
2R	14488142	2R_14488142_SNP [dm3] 2R_18600637_SNP [dm6]	A	C	3.730e^-4	0.819	INTRON GEFmeso
2L	12498394	2L_12498394_SNP [dm3] 2L_12498394_SNP [dm6]	A	G	3.734e^-4	0.819	INTRON bun
2L	16501439	2L_16501439_SNP [dm3] 2L_16501439_SNP [dm6]	A	C	3.740e^-4	0.819	UPSTREAM Tpr2 INTRON Tpr2	TF binding site mE1_TFBS_Trl
3L	7269094	3L_7269094_SNP [dm3] 3L_7275994_SNP [dm6]	G	A	3.742e^-4	0.819	INTRON unc-13-4A
X	2006194	X_2006194_SNP [dm3] X_2112161_SNP [dm6]	G	T	3.753e^-4	0.819	UTR_3_PRIME csw	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk
2L	14576961	2L_14576961_DEL [dm3] 2L_14576961_DEL [dm6]	TAGG	CCA	3.754e^-4	0.819	EXON CR44856	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6823741	X_6823741_SNP [dm3] X_6929708_SNP [dm6]	C	A	3.759e^-4	0.819	INTRON CG14431
3R	20919936	3R_20919936_SNP [dm3] 3R_25094214_SNP [dm6]	T	C	3.763e^-4	0.819	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	12630604	3R_12630604_SNP [dm3] 3R_16804882_SNP [dm6]	C	T	3.765e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12431406	3L_12431406_SNP [dm3] 3L_12438306_SNP [dm6]	C	A	3.768e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	825918	2L_825918_SNP [dm3] 2L_825918_SNP [dm6]	C	T	3.772e^-4	0.819	UPSTREAM dock & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1285904	2R_1285904_SNP [dm3] 2R_5398399_SNP [dm6]	A	T	3.772e^-4	0.819	INTERGENIC
3R	24988500	3R_24988500_SNP [dm3] 3R_29162778_SNP [dm6]	C	T	3.782e^-4	0.819	SYNONYMOUS_CODING CG11897
2L	16210930	2L_16210930_INS [dm3] 2L_16210930_INS [dm6]	C	CTTGGATGAGACTGGC...	3.783e^-4	0.819	UPSTREAM CG31819 INTERGENIC
2L	10616018	2L_10616018_SNP [dm3] 2L_10616018_SNP [dm6]	C	A	3.787e^-4	0.819	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
X	15149903	X_15149903_INS [dm3] X_15255870_INS [dm6]	G	GGGGAAAACTTTGAAAGTCT...	3.788e^-4	0.819	INTERGENIC
3R	1910416	3R_1910416_SNP [dm3] 3R_6084694_SNP [dm6]	C	T	3.801e^-4	0.819	INTERGENIC
2L	174200	2L_174200_SNP [dm3] 2L_174200_SNP [dm6]	G	A	3.805e^-4	0.819	INTRON spen
X	20005044	X_20005044_SNP [dm3] X_20111011_SNP [dm6]	T	A	3.807e^-4	0.819	UPSTREAM karr INTERGENIC
3R	24989488	3R_24989488_SNP [dm3] 3R_29163766_SNP [dm6]	C	A	3.809e^-4	0.819	SYNONYMOUS_CODING CG11897
3L	14187567	3L_14187567_SNP [dm3] 3L_14194467_SNP [dm6]	A	C	3.812e^-4	0.819	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	316528	2L_316528_SNP [dm3] 2L_316528_SNP [dm6]	G	T	3.835e^-4	0.819	INTRON Plc21C
3L	19378808	3L_19378808_SNP [dm3] 3L_19385708_SNP [dm6]	C	G	3.843e^-4	0.819	INTRON CG32206
3L	5087417	3L_5087417_SNP [dm3] 3L_5087417_SNP [dm6]	G	A	3.851e^-4	0.819	INTERGENIC
2R	14490513	2R_14490513_SNP [dm3] 2R_18603008_SNP [dm6]	A	G	3.854e^-4	0.819	INTRON GEFmeso
X	9714180	X_9714180_SNP [dm3] X_9820147_SNP [dm6]	A	T	3.858e^-4	0.819	INTRON CG32698
2L	15998658	2L_15998658_SNP [dm3] 2L_15998658_SNP [dm6]	A	C	3.868e^-4	0.819	INTERGENIC
3R	20015747	3R_20015747_SNP [dm3] 3R_24190025_SNP [dm6]	G	A	3.869e^-4	0.819	SYNONYMOUS_CODING jnj
2R	10816351	2R_10816351_SNP [dm3] 2R_14928846_SNP [dm6]	A	G	3.873e^-4	0.819	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19787719	2R_19787719_SNP [dm3] 2R_23900196_SNP [dm6]	T	C	3.878e^-4	0.819	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo
3L	10450366	3L_10450366_SNP [dm3] 3L_10457266_SNP [dm6]	A	G	3.889e^-4	0.819	INTERGENIC
X	8295649	X_8295649_SNP [dm3] X_8401616_SNP [dm6]	G	A	3.891e^-4	0.819	SYNONYMOUS_CODING CG10555	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11161680	X_11161680_SNP [dm3] X_11267647_SNP [dm6]	G	A	3.895e^-4	0.819	INTRON CG44422
2R	473129	2R_473129_SNP [dm3] 2R_4585624_SNP [dm6]	A	G	3.895e^-4	0.819	INTERGENIC
X	9714442	X_9714442_SNP [dm3] X_9820409_SNP [dm6]	T	A	3.904e^-4	0.819	INTRON CG32698
2L	5736316	2L_5736316_SNP [dm3] 2L_5736316_SNP [dm6]	T	G	3.906e^-4	0.819	INTRON CG11030 & 1 other	TF binding site mE1_TFBS_HSA
2L	12855123	2L_12855123_SNP [dm3] 2L_12855123_SNP [dm6]	G	T	3.912e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13678708	3R_13678708_SNP [dm3] 3R_17852986_SNP [dm6]	G	T	3.916e^-4	0.819	INTRON tinc
2R	19668143	2R_19668143_SNP [dm3] 2R_23780620_SNP [dm6]	T	C	3.919e^-4	0.819	INTRON CG9850
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	3.923e^-4	0.819	INTRON alpha-Man-I
2L	7357517	2L_7357517_SNP [dm3] 2L_7357517_SNP [dm6]	T	C	3.924e^-4	0.819	INTERGENIC
3L	3976594	3L_3976594_SNP [dm3] 3L_3976594_SNP [dm6]	G	A	3.930e^-4	0.819	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10633227	2L_10633227_SNP [dm3] 2L_10633227_SNP [dm6]	G	T	3.935e^-4	0.819	INTRON CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17860681	2L_17860681_SNP [dm3] 2L_17860681_SNP [dm6]	T	A	3.937e^-4	0.819	INTRON CadN2
3L	11501341	3L_11501341_SNP [dm3] 3L_11508241_SNP [dm6]	T	C	3.943e^-4	0.819	UPSTREAM CG33500 DOWNSTREAM Sgs8 INTERGENIC
2R	18454258	2R_18454258_DEL [dm3] 2R_22566753_DEL [dm6]	AAC	A	3.945e^-4	0.819	INTRON dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9475275	2R_9475275_SNP [dm3] 2R_13587770_SNP [dm6]	G	A	3.948e^-4	0.819	INTRON CG6191 & 1 other
2R	17347123	2R_17347123_SNP [dm3] 2R_21459618_SNP [dm6]	G	A	3.954e^-4	0.819	INTRON Sdc
2L	5924082	2L_5924082_SNP [dm3] 2L_5924082_SNP [dm6]	A	T	3.960e^-4	0.819	UPSTREAM CG9016 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14666088	X_14666088_SNP [dm3] X_14772055_SNP [dm6]	A	G	3.963e^-4	0.819	INTERGENIC
X	14666108	X_14666108_SNP [dm3] X_14772075_SNP [dm6]	G	T	3.963e^-4	0.819	INTERGENIC
X	14666109	X_14666109_SNP [dm3] X_14772076_SNP [dm6]	G	T	3.963e^-4	0.819	INTERGENIC
2R	4646797	2R_4646797_SNP [dm3] 2R_8759292_SNP [dm6]	G	A	3.966e^-4	0.819	NON_SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11391518	2R_11391518_SNP [dm3] 2R_15504013_SNP [dm6]	A	C	3.966e^-4	0.819	UPSTREAM Ir52c DOWNSTREAM Ir52b INTERGENIC
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	3.969e^-4	0.819	INTERGENIC
2L	7133482	2L_7133482_SNP [dm3] 2L_7133482_SNP [dm6]	A	C	3.970e^-4	0.819	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7357546	2L_7357546_DEL [dm3] 2L_7357546_DEL [dm6]	ATA	A	3.971e^-4	0.819	INTERGENIC
X	1127034	X_1127034_SNP [dm3] X_1233001_SNP [dm6]	C	G	3.973e^-4	0.819	INTRON CG3638	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10044419	2L_10044419_INS [dm3] 2L_10044419_INS [dm6]	C	CAGCGGAAAAAA...	3.988e^-4	0.819	INTERGENIC
2R	473158	2R_473158_INS [dm3] 2R_4585653_INS [dm6]	T	TCCCGCTGCTCTCA...	3.990e^-4	0.819	INTERGENIC
X	13333530	X_13333530_SNP [dm3] X_13439497_SNP [dm6]	T	C	3.990e^-4	0.819	INTERGENIC
2L	5943591	2L_5943591_SNP [dm3] 2L_5943591_SNP [dm6]	G	C	3.993e^-4	0.819	UPSTREAM Gpdh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2L	5943681	2L_5943681_SNP [dm3] 2L_5943681_SNP [dm6]	C	G	3.993e^-4	0.819	UTR_5_PRIME Gpdh UPSTREAM Gpdh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	15861103	2L_15861103_SNP [dm3] 2L_15861103_SNP [dm6]	G	C	4.010e^-4	0.821	INTERGENIC
3L	8962026	3L_8962026_SNP [dm3] 3L_8968926_SNP [dm6]	C	T	4.015e^-4	0.821	SYNONYMOUS_CODING CG5026 DOWNSTREAM CG5021	TF binding site mE1_TFBS_chinmo
2L	3602964	2L_3602964_SNP [dm3] 2L_3602964_SNP [dm6]	G	A	4.016e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	15615268	2L_15615268_SNP [dm3] 2L_15615268_SNP [dm6]	C	A	4.023e^-4	0.821	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
3R	10764684	3R_10764684_SNP [dm3] 3R_14938962_SNP [dm6]	C	T	4.027e^-4	0.821	INTERGENIC
2L	11069523	2L_11069523_SNP [dm3] 2L_11069523_SNP [dm6]	G	A	4.035e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2690567	X_2690567_SNP [dm3] X_2796534_SNP [dm6]	T	C	4.041e^-4	0.821	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15209301	3R_15209301_SNP [dm3] 3R_19383579_SNP [dm6]	A	G	4.041e^-4	0.821	INTRON Ino80
X	10272520	X_10272520_SNP [dm3] X_10378487_SNP [dm6]	T	C	4.044e^-4	0.821	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
2R	19663936	2R_19663936_SNP [dm3] 2R_23776413_SNP [dm6]	C	A	4.045e^-4	0.821	INTRON CG9850
X	14040053	X_14040053_SNP [dm3] X_14146020_SNP [dm6]	G	A	4.054e^-4	0.821	INTERGENIC
2L	4307960	2L_4307960_SNP [dm3] 2L_4307960_SNP [dm6]	T	C	4.065e^-4	0.821	SYNONYMOUS_CODING tutl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25825919	3R_25825919_SNP [dm3] 3R_30000197_SNP [dm6]	C	T	4.076e^-4	0.821	UPSTREAM Tace DOWNSTREAM CG11504 INTRON CG34298	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	4.077e^-4	0.821	INTERGENIC
2R	16615159	2R_16615159_SNP [dm3] 2R_20727654_SNP [dm6]	G	C	4.077e^-4	0.821	DOWNSTREAM CG13442 INTRON dpr	TF binding site mE1_TFBS_chinmo
3L	9947250	3L_9947250_SNP [dm3] 3L_9954150_SNP [dm6]	G	T	4.082e^-4	0.821	INTRON CG34356
3L	13513778	3L_13513778_SNP [dm3] 3L_13520678_SNP [dm6]	G	A	4.086e^-4	0.821	INTERGENIC
2R	15588589	2R_15588589_SNP [dm3] 2R_19701084_SNP [dm6]	A	T	4.100e^-4	0.821	UTR_5_PRIME Obp56c	regulatory region REDfly_CRMs
2R	14278029	2R_14278029_DEL [dm3] 2R_18390524_DEL [dm6]	CACATCATTGG...	TTATA	4.102e^-4	0.821	DOWNSTREAM CG15065 INTRON CG15068
X	15873704	X_15873704_SNP [dm3] X_15979671_SNP [dm6]	C	T	4.115e^-4	0.821	SYNONYMOUS_CODING CG9170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15873719	X_15873719_SNP [dm3] X_15979686_SNP [dm6]	A	G	4.115e^-4	0.821	SYNONYMOUS_CODING CG9170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3341991	2R_3341991_SNP [dm3] 2R_7454486_SNP [dm6]	G	C	4.119e^-4	0.821	DOWNSTREAM Inos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	23105957	3R_23105957_SNP [dm3] 3R_27280235_SNP [dm6]	T	C	4.120e^-4	0.821	INTRON mrt
2L	5812252	2L_5812252_SNP [dm3] 2L_5812252_SNP [dm6]	A	T	4.132e^-4	0.821	DOWNSTREAM CG43307 INTERGENIC
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	4.137e^-4	0.821	INTERGENIC
2L	2336194	2L_2336194_SNP [dm3] 2L_2336194_SNP [dm6]	A	G	4.138e^-4	0.821	INTRON CG9967 & 1 other
2R	19482133	2R_19482133_SNP [dm3] 2R_23594610_SNP [dm6]	A	G	4.139e^-4	0.821	INTRON apt	TF binding site mE1_TFBS_sens
3L	10230487	3L_10230487_SNP [dm3] 3L_10237387_SNP [dm6]	A	T	4.140e^-4	0.821	DOWNSTREAM CR44542 INTERGENIC
X	1086554	X_1086554_SNP [dm3] X_1192521_SNP [dm6]	T	G	4.143e^-4	0.821	INTRON CG11380
3R	26871611	3R_26871611_SNP [dm3] 3R_31045889_SNP [dm6]	C	T	4.150e^-4	0.821	UPSTREAM CG33920 INTRON CanA1
2R	473196	2R_473196_SNP [dm3] 2R_4585691_SNP [dm6]	T	G	4.158e^-4	0.821	INTERGENIC
2L	9412134	2L_9412134_SNP [dm3] 2L_9412134_SNP [dm6]	G	T	4.161e^-4	0.821	INTRON Shawl
X	16266074	X_16266074_SNP [dm3] X_16372041_SNP [dm6]	A	C	4.162e^-4	0.821	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14431988	2L_14431988_SNP [dm3] 2L_14431988_SNP [dm6]	C	T	4.171e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	925759	2L_925759_SNP [dm3] 2L_925759_SNP [dm6]	C	T	4.174e^-4	0.821	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11644511	2L_11644511_SNP [dm3] 2L_11644511_SNP [dm6]	T	G	4.189e^-4	0.821	DOWNSTREAM CG6614 INTERGENIC
3R	25244330	3R_25244330_INS [dm3] 3R_29418608_INS [dm6]	A	AACCCAAGGCTGTAATTTGA...	4.191e^-4	0.821	INTRON Ptp99A
3R	1910411	3R_1910411_INS [dm3] 3R_6084689_INS [dm6]	T	TTA	4.194e^-4	0.821	INTERGENIC
3L	16731035	3L_16731035_SNP [dm3] 3L_16737935_SNP [dm6]	G	A	4.198e^-4	0.821	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15645688	3L_15645688_SNP [dm3] 3L_15652588_SNP [dm6]	T	A	4.199e^-4	0.821	UTR_5_PRIME Eig71Ed UPSTREAM Eig71Ec
X	19685319	X_19685319_SNP [dm3] X_19791286_SNP [dm6]	A	T	4.201e^-4	0.821	INTERGENIC
2L	3697435	2L_3697435_SNP [dm3] 2L_3697435_SNP [dm6]	A	G	4.204e^-4	0.821	NON_SYNONYMOUS_CODING CG3604 UPSTREAM CG16712
2L	7357473	2L_7357473_INS [dm3] 2L_7357473_INS [dm6]	A	ATATAATAG	4.205e^-4	0.821	INTERGENIC
2R	4698706	2R_4698706_SNP [dm3] 2R_8811201_SNP [dm6]	C	T	4.208e^-4	0.821	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	10185817	X_10185817_INS [dm3] X_10291784_INS [dm6]	C	TAGATTCGTTGAA...	4.212e^-4	0.821	INTRON alpha-Man-I
3R	17722864	3R_17722864_SNP [dm3] 3R_21897142_SNP [dm6]	T	C	4.214e^-4	0.821	INTRON CG6678
2R	20434909	2R_20434909_SNP [dm3] 2R_24547386_SNP [dm6]	G	T	4.215e^-4	0.821	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6810345	2L_6810345_SNP [dm3] 2L_6810345_SNP [dm6]	T	A	4.216e^-4	0.821	INTERGENIC
2L	11907116	2L_11907116_SNP [dm3] 2L_11907116_SNP [dm6]	T	C	4.217e^-4	0.821	INTRON Pde1c
3R	16274765	3R_16274765_SNP [dm3] 3R_20449043_SNP [dm6]	G	A	4.221e^-4	0.821	INTRON Gfrl
2L	15351407	2L_15351407_SNP [dm3] 2L_15351407_SNP [dm6]	C	T	4.225e^-4	0.821	INTERGENIC
3R	22110131	3R_22110131_SNP [dm3] 3R_26284409_SNP [dm6]	T	C	4.244e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13822198	3L_13822198_SNP [dm3] 3L_13829098_SNP [dm6]	A	T	4.245e^-4	0.821	INTERGENIC
3L	1410813	3L_1410813_SNP [dm3] 3L_1410813_SNP [dm6]	C	G	4.248e^-4	0.821	UPSTREAM CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16498157	2R_16498157_SNP [dm3] 2R_20610652_SNP [dm6]	A	C	4.255e^-4	0.821	INTRON Hil
3R	23488554	3R_23488554_SNP [dm3] 3R_27662832_SNP [dm6]	A	G	4.257e^-4	0.821	INTRON unc80	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	16237563	2L_16237563_SNP [dm3] 2L_16237563_SNP [dm6]	G	A	4.260e^-4	0.821	SYNONYMOUS_CODING CG42817
3L	21702395	3L_21702395_SNP [dm3] 3L_21709295_SNP [dm6]	C	G	4.262e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16828580	X_16828580_SNP [dm3] X_16934547_SNP [dm6]	A	T	4.271e^-4	0.821	INTRON CG4928	TF binding site mE1_TFBS_chinmo
3R	13580250	3R_13580250_DEL [dm3] 3R_17754528_DEL [dm6]	TCAAAATTATG...	T	4.276e^-4	0.821	INTRON TyrR
2R	18278848	2R_18278848_SNP [dm3] 2R_22391343_SNP [dm6]	G	A	4.278e^-4	0.821	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14464298	X_14464298_INS [dm3] X_14570265_INS [dm6]	G	GC	4.284e^-4	0.821	INTERGENIC
3L	16203544	3L_16203544_SNP [dm3] 3L_16210444_SNP [dm6]	T	G	4.291e^-4	0.821	INTERGENIC
3L	13421198	3L_13421198_SNP [dm3] 3L_13428098_SNP [dm6]	A	T	4.292e^-4	0.821	DOWNSTREAM CG10713 INTERGENIC
X	18237800	X_18237800_SNP [dm3] X_18343767_SNP [dm6]	C	T	4.292e^-4	0.821	INTRON CG6123	TF binding site mE1_TFBS_chinmo
3R	26936267	3R_26936267_SNP [dm3] 3R_31110545_SNP [dm6]	G	A	4.299e^-4	0.821	INTERGENIC
2R	8327274	2R_8327274_SNP [dm3] 2R_12439769_SNP [dm6]	C	G	4.301e^-4	0.821	DOWNSTREAM CG30334 INTRON Dyb
2L	2271399	2L_2271399_SNP [dm3] 2L_2271399_SNP [dm6]	T	G	4.312e^-4	0.821	EXON CR43753
3R	17337422	3R_17337422_SNP [dm3] 3R_21511700_SNP [dm6]	C	A	4.313e^-4	0.821	INTRON C15
2R	10816290	2R_10816290_SNP [dm3] 2R_14928785_SNP [dm6]	T	G	4.314e^-4	0.821	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14994707	3L_14994707_DEL [dm3] 3L_15001607_DEL [dm6]	AGGGG	A	4.316e^-4	0.821	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
2L	18617823	2L_18617823_SNP [dm3] 2L_18617823_SNP [dm6]	G	T	4.318e^-4	0.821	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6450635	2R_6450635_SNP [dm3] 2R_10563130_SNP [dm6]	T	A	4.321e^-4	0.821	INTRON psq	TF binding site mE1_TFBS_HSA
2L	5941313	2L_5941313_SNP [dm3] 2L_5941313_SNP [dm6]	T	C	4.329e^-4	0.821	UPSTREAM CR45289 INTERGENIC
2R	17394117	2R_17394117_SNP [dm3] 2R_21506612_SNP [dm6]	T	G	4.330e^-4	0.821	INTRON MESK2
2L	19608521	2L_19608521_SNP [dm3] 2L_19608521_SNP [dm6]	C	T	4.335e^-4	0.821	INTRON Lar
2R	10816336	2R_10816336_SNP [dm3] 2R_14928831_SNP [dm6]	A	T	4.341e^-4	0.821	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7094214	2L_7094214_INS [dm3] 2L_7094214_INS [dm6]	A	AGCAGCA	4.342e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14688680	3L_14688680_SNP [dm3] 3L_14695580_SNP [dm6]	A	T	4.362e^-4	0.823	DOWNSTREAM CG13474 INTRON ome
3L	14682288	3L_14682288_SNP [dm3] 3L_14689188_SNP [dm6]	T	A	4.365e^-4	0.823	INTRON ome
2L	5736174	2L_5736174_SNP [dm3] 2L_5736174_SNP [dm6]	A	C	4.374e^-4	0.823	SPLICE_SITE_REGION CG11147 INTRON CG11030 & 1 other	TF binding site mE1_TFBS_HSA
3L	6280128	3L_6280128_SNP [dm3] 3L_6287028_SNP [dm6]	T	C	4.375e^-4	0.823	INTERGENIC
3R	12630591	3R_12630591_SNP [dm3] 3R_16804869_SNP [dm6]	C	T	4.376e^-4	0.823	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16987316	2L_16987316_SNP [dm3] 2L_16987316_SNP [dm6]	G	C	4.381e^-4	0.823	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
2L	11649020	2L_11649020_SNP [dm3] 2L_11649020_SNP [dm6]	A	T	4.385e^-4	0.823	UPSTREAM CG6614 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14883107	3R_14883107_SNP [dm3] 3R_19057385_SNP [dm6]	G	T	4.390e^-4	0.823	INTRON cdi

Missing results

By genomic position
Variant impact
Gene name

Unique_TEs phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results