DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.594e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.05917

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2021 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	5208441	X_5208441_SNP [dm3] X_5314408_SNP [dm6]	G	C	6.876e^-7	0.76	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	8.105e^-7	0.76	INTRON Oamb
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	1.817e^-6	0.888	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12392251	3L_12392251_SNP [dm3] 3L_12399151_SNP [dm6]	A	G	3.731e^-6	0.888	SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	3.822e^-6	0.888	INTERGENIC
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	4.168e^-6	0.888	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	1325184	3L_1325184_SNP [dm3] 3L_1325184_SNP [dm6]	G	A	4.620e^-6	0.888	UTR_5_PRIME Myo61F UPSTREAM CR45166 INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12411617	3L_12411617_SNP [dm3] 3L_12418517_SNP [dm6]	A	G	5.095e^-6	0.888	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	5208428	X_5208428_SNP [dm3] X_5314395_SNP [dm6]	T	C	5.179e^-6	0.888	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12431406	3L_12431406_SNP [dm3] 3L_12438306_SNP [dm6]	C	A	5.209e^-6	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	897184	3L_897184_SNP [dm3] 3L_897184_SNP [dm6]	A	G	5.685e^-6	0.888	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
3L	12411612	3L_12411612_SNP [dm3] 3L_12418512_SNP [dm6]	A	T	6.276e^-6	0.888	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	4630672	3L_4630672_SNP [dm3] 3L_4630672_SNP [dm6]	C	G	6.565e^-6	0.888	INTRON axo
2R	19905970	2R_19905970_SNP [dm3] 2R_24018447_SNP [dm6]	A	G	7.055e^-6	0.888	SYNONYMOUS_CODING CG3121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25328692	3R_25328692_SNP [dm3] 3R_29502970_SNP [dm6]	T	C	7.632e^-6	0.888	SYNONYMOUS_CODING Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	3546984	X_3546984_INS [dm3] X_3652951_INS [dm6]	T	TC	9.398e^-6	0.888	INTRON AstA-R1
3R	18797737	3R_18797737_SNP [dm3] 3R_22972015_SNP [dm6]	G	T	9.845e^-6	0.888	INTERGENIC
3R	19870845	3R_19870845_SNP [dm3] 3R_24045123_SNP [dm6]	A	G	1.018e^-5	0.888	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	1.059e^-5	0.888	UTR_3_PRIME sfl
3L	13725500	3L_13725500_DEL [dm3] 3L_13732400_DEL [dm6]	ACTGACAGA	A	1.180e^-5	0.888	INTRON bru-3
3L	13727086	3L_13727086_DEL [dm3] 3L_13733986_DEL [dm6]	CAGTCCGTGAACCCAGAGTC...	C	1.315e^-5	0.888	INTRON bru-3
3L	13724770	3L_13724770_SNP [dm3] 3L_13731670_SNP [dm6]	A	C	1.424e^-5	0.888	INTRON bru-3
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	1.428e^-5	0.888	UPSTREAM CG5510 INTERGENIC
2L	20412981	2L_20412981_SNP [dm3] 2L_20412981_SNP [dm6]	C	G	1.527e^-5	0.888	INTRON CG10947
3R	10764650	3R_10764650_SNP [dm3] 3R_14938928_SNP [dm6]	A	G	1.537e^-5	0.888	INTERGENIC
3L	18928910	3L_18928910_SNP [dm3] 3L_18935810_SNP [dm6]	C	A	1.651e^-5	0.888	INTRON CG32204
3L	1368309	3L_1368309_SNP [dm3] 3L_1368309_SNP [dm6]	G	A	1.732e^-5	0.888	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	1.775e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7852125	3L_7852125_SNP [dm3] 3L_7859025_SNP [dm6]	T	C	1.801e^-5	0.888	INTRON Pdp1
3L	9751229	3L_9751229_SNP [dm3] 3L_9758129_SNP [dm6]	T	G	1.825e^-5	0.888	INTRON CG42268
3R	15670105	3R_15670105_SNP [dm3] 3R_19844383_SNP [dm6]	C	A	1.901e^-5	0.888	INTERGENIC
3L	1263078	3L_1263078_SNP [dm3] 3L_1263078_SNP [dm6]	G	C	2.087e^-5	0.888	INTRON CG9134
3R	16505584	3R_16505584_SNP [dm3] 3R_20679862_SNP [dm6]	C	T	2.097e^-5	0.888	DOWNSTREAM CR43452 INTERGENIC
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	2.103e^-5	0.888	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	12260774	2R_12260774_SNP [dm3] 2R_16373269_SNP [dm6]	G	T	2.173e^-5	0.888	INTERGENIC
3R	18792563	3R_18792563_SNP [dm3] 3R_22966841_SNP [dm6]	C	T	2.308e^-5	0.888	SYNONYMOUS_CODING Tpl94D	TF binding site mE1_TFBS_cad
3L	7852205	3L_7852205_SNP [dm3] 3L_7859105_SNP [dm6]	T	A	2.401e^-5	0.888	INTRON Pdp1
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	2.451e^-5	0.888	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	16991961	3L_16991961_SNP [dm3] 3L_16998861_SNP [dm6]	A	G	2.459e^-5	0.888	SYNONYMOUS_CODING CG3764 UPSTREAM mir-2500	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7199551	3L_7199551_SNP [dm3] 3L_7206451_SNP [dm6]	C	T	2.540e^-5	0.888	INTERGENIC
3L	18645916	3L_18645916_SNP [dm3] 3L_18652816_SNP [dm6]	T	A	2.596e^-5	0.888	INTRON MYPT-75D
3L	16731035	3L_16731035_SNP [dm3] 3L_16737935_SNP [dm6]	G	A	2.613e^-5	0.888	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	2.739e^-5	0.888	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7133482	2L_7133482_SNP [dm3] 2L_7133482_SNP [dm6]	A	C	2.815e^-5	0.888	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16519233	3R_16519233_SNP [dm3] 3R_20693511_SNP [dm6]	A	G	2.847e^-5	0.888	SYNONYMOUS_CODING Oamb INTRON Oamb	TF binding site mE1_TFBS_cad
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	2.868e^-5	0.888	INTERGENIC
2R	10265506	2R_10265506_SNP [dm3] 2R_14378001_SNP [dm6]	A	T	2.972e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3R	10420289	3R_10420289_SNP [dm3] 3R_14594567_SNP [dm6]	A	T	2.997e^-5	0.888	INTRON stumps	regulatory region REDfly_CRMs
3L	897188	3L_897188_SNP [dm3] 3L_897188_SNP [dm6]	T	C	3.040e^-5	0.888	SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2R	12851813	2R_12851813_SNP [dm3] 2R_16964308_SNP [dm6]	C	G	3.044e^-5	0.888	EXON CR44376
3L	1334406	3L_1334406_SNP [dm3] 3L_1334406_SNP [dm6]	C	G	3.061e^-5	0.888	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	3.172e^-5	0.888	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	3.297e^-5	0.888	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	7852135	3L_7852135_SNP [dm3] 3L_7859035_SNP [dm6]	G	C	3.355e^-5	0.888	INTRON Pdp1
3R	18797809	3R_18797809_SNP [dm3] 3R_22972087_SNP [dm6]	C	T	3.414e^-5	0.888	INTERGENIC
2R	10265199	2R_10265199_SNP [dm3] 2R_14377694_SNP [dm6]	A	C	3.481e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3L	3099166	3L_3099166_SNP [dm3] 3L_3099166_SNP [dm6]	C	T	3.491e^-5	0.888	INTRON Cht7
2R	19905679	2R_19905679_SNP [dm3] 2R_24018156_SNP [dm6]	C	A	3.524e^-5	0.888	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	7887972	2R_7887972_SNP [dm3] 2R_12000467_SNP [dm6]	A	C	3.612e^-5	0.888	INTERGENIC
3L	3098955	3L_3098955_SNP [dm3] 3L_3098955_SNP [dm6]	G	A	3.628e^-5	0.888	INTRON Cht7
3L	2495965	3L_2495965_SNP [dm3] 3L_2495965_SNP [dm6]	G	T	3.689e^-5	0.888	SPLICE_SITE_REGION CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	3.692e^-5	0.888	UPSTREAM CG43244 INTERGENIC
3L	18645967	3L_18645967_SNP [dm3] 3L_18652867_SNP [dm6]	A	C	3.785e^-5	0.888	INTRON MYPT-75D
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	3.832e^-5	0.888	INTRON Ccn
3R	10420212	3R_10420212_SNP [dm3] 3R_14594490_SNP [dm6]	A	T	3.975e^-5	0.888	INTRON stumps	regulatory region REDfly_CRMs
X	3548545	X_3548545_SNP [dm3] X_3654512_SNP [dm6]	C	A	3.996e^-5	0.888	INTRON AstA-R1
2R	3633470	2R_3633470_SNP [dm3] 2R_7745965_SNP [dm6]	G	A	4.035e^-5	0.888	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	18352906	X_18352906_SNP [dm3] X_18458873_SNP [dm6]	G	A	4.114e^-5	0.888	SYNONYMOUS_CODING CG32547 DOWNSTREAM CG43843
3R	14307711	3R_14307711_SNP [dm3] 3R_18481989_SNP [dm6]	G	A	4.186e^-5	0.888	INTRON fru
2R	7244367	2R_7244367_SNP [dm3] 2R_11356862_SNP [dm6]	C	A	4.224e^-5	0.888	SYNONYMOUS_CODING iotaTry UPSTREAM CG13202 DOWNSTREAM deltaTry & 1 other	TF binding site mE1_TFBS_sens
X	16886317	X_16886317_SNP [dm3] X_16992284_SNP [dm6]	A	T	4.280e^-5	0.888	INTRON CG45002
2R	10265477	2R_10265477_SNP [dm3] 2R_14377972_SNP [dm6]	G	T	4.310e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
2R	10265479	2R_10265479_INS [dm3] 2R_14377974_INS [dm6]	C	CC	4.310e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	4.321e^-5	0.888	INTERGENIC
3R	13571163	3R_13571163_SNP [dm3] 3R_17745441_SNP [dm6]	A	G	4.341e^-5	0.888	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	4.358e^-5	0.888	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15666530	X_15666530_SNP [dm3] X_15772497_SNP [dm6]	C	T	4.373e^-5	0.888	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
3L	16553341	3L_16553341_SNP [dm3] 3L_16560241_SNP [dm6]	G	T	4.385e^-5	0.888	INTERGENIC
3L	2430863	3L_2430863_SNP [dm3] 3L_2430863_SNP [dm6]	A	G	4.482e^-5	0.888	INTRON CG45186
3R	17110690	3R_17110690_SNP [dm3] 3R_21284968_SNP [dm6]	A	G	4.604e^-5	0.888	DOWNSTREAM CG17298 INTRON SIFaR
2R	14490438	2R_14490438_SNP [dm3] 2R_18602933_SNP [dm6]	T	C	4.606e^-5	0.888	INTRON GEFmeso
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	4.703e^-5	0.888	UPSTREAM CG43244 INTERGENIC
3R	11165246	3R_11165246_SNP [dm3] 3R_15339524_SNP [dm6]	T	C	4.747e^-5	0.888	NON_SYNONYMOUS_CODING CG6218
3L	13724740	3L_13724740_DEL [dm3] 3L_13731640_DEL [dm6]	GCCACAT	G	4.865e^-5	0.888	INTRON bru-3
2R	19719313	2R_19719313_SNP [dm3] 2R_23831790_SNP [dm6]	G	A	4.949e^-5	0.888	INTRON CG5549
X	3546939	X_3546939_SNP [dm3] X_3652906_SNP [dm6]	C	T	4.985e^-5	0.888	INTRON AstA-R1
3L	14729839	3L_14729839_SNP [dm3] 3L_14736739_SNP [dm6]	G	C	5.015e^-5	0.888	INTRON ome
2R	10265507	2R_10265507_SNP [dm3] 2R_14378002_SNP [dm6]	T	A	5.133e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3L	18645898	3L_18645898_SNP [dm3] 3L_18652798_SNP [dm6]	A	G	5.145e^-5	0.888	INTRON MYPT-75D
2R	10265406	2R_10265406_SNP [dm3] 2R_14377901_SNP [dm6]	G	C	5.187e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	5.189e^-5	0.888	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	8586240	2R_8586240_SNP [dm3] 2R_12698735_SNP [dm6]	T	C	5.252e^-5	0.888	INTERGENIC
2L	20064873	2L_20064873_SNP [dm3] 2L_20064873_SNP [dm6]	G	C	5.561e^-5	0.888	SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7133460	2L_7133460_SNP [dm3] 2L_7133460_SNP [dm6]	C	T	5.577e^-5	0.888	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7133456	2L_7133456_SNP [dm3] 2L_7133456_SNP [dm6]	G	T	5.654e^-5	0.888	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	19482135	2R_19482135_SNP [dm3] 2R_23594612_SNP [dm6]	G	C	5.756e^-5	0.888	INTRON apt	TF binding site mE1_TFBS_sens
3R	18642020	3R_18642020_SNP [dm3] 3R_22816298_SNP [dm6]	T	G	5.764e^-5	0.888	UPSTREAM CG13840 INTERGENIC
3R	10420226	3R_10420226_SNP [dm3] 3R_14594504_SNP [dm6]	T	C	5.806e^-5	0.888	INTRON stumps	regulatory region REDfly_CRMs
3L	2510391	3L_2510391_SNP [dm3] 3L_2510391_SNP [dm6]	G	T	5.818e^-5	0.888	SYNONYMOUS_CODING Spn INTRON Spn	TF binding site mE1_TFBS_chinmo
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	5.881e^-5	0.888	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3R	18949002	3R_18949002_SNP [dm3] 3R_23123280_SNP [dm6]	A	G	5.885e^-5	0.888	SYNONYMOUS_CODING CenB1A DOWNSTREAM CG31365	TF binding site mE1_TFBS_sens
3L	16362241	3L_16362241_SNP [dm3] 3L_16369141_SNP [dm6]	C	T	5.988e^-5	0.888	UPSTREAM CG18814 INTRON CG4842
3R	18588006	3R_18588006_SNP [dm3] 3R_22762284_SNP [dm6]	A	C	6.012e^-5	0.888	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
3R	10420235	3R_10420235_SNP [dm3] 3R_14594513_SNP [dm6]	A	C	6.060e^-5	0.888	INTRON stumps	regulatory region REDfly_CRMs
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	6.196e^-5	0.888	INTRON sfl
2R	11192592	2R_11192592_DEL [dm3] 2R_15305087_DEL [dm6]	CT	C	6.220e^-5	0.888	INTRON Trpm
3L	1376855	3L_1376855_SNP [dm3] 3L_1376855_SNP [dm6]	T	C	6.290e^-5	0.888	INTRON Ptp61F & 1 other
X	10013348	X_10013348_SNP [dm3] X_10119315_SNP [dm6]	A	T	6.300e^-5	0.888	INTRON RhoU & 1 other
3R	7011205	3R_7011205_SNP [dm3] 3R_11185483_SNP [dm6]	T	C	6.321e^-5	0.888	INTERGENIC
3L	16204363	3L_16204363_SNP [dm3] 3L_16211263_SNP [dm6]	G	T	6.346e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10420221	3R_10420221_SNP [dm3] 3R_14594499_SNP [dm6]	A	G	6.425e^-5	0.888	INTRON stumps	regulatory region REDfly_CRMs
X	11560584	X_11560584_SNP [dm3] X_11666551_SNP [dm6]	T	A	6.470e^-5	0.888	INTRON Ptp10D
3L	2430869	3L_2430869_SNP [dm3] 3L_2430869_SNP [dm6]	T	A	6.481e^-5	0.888	INTRON CG45186
3L	18928920	3L_18928920_SNP [dm3] 3L_18935820_SNP [dm6]	G	T	6.499e^-5	0.888	INTRON CG32204
3L	18928933	3L_18928933_SNP [dm3] 3L_18935833_SNP [dm6]	A	G	6.562e^-5	0.888	INTRON CG32204
2L	8579237	2L_8579237_SNP [dm3] 2L_8579237_SNP [dm6]	T	C	6.656e^-5	0.888	INTRON Sema-1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19133663	3R_19133663_SNP [dm3] 3R_23307941_SNP [dm6]	A	G	6.688e^-5	0.888	INTRON pnt	TF binding site mE1_TFBS_inv
3L	13778722	3L_13778722_SNP [dm3] 3L_13785622_SNP [dm6]	C	T	6.705e^-5	0.888	INTRON bru-3
2L	4911815	2L_4911815_SNP [dm3] 2L_4911815_SNP [dm6]	G	A	6.896e^-5	0.888	SYNONYMOUS_CODING hoe1 UTR_5_PRIME hoe1	TF binding site mE1_TFBS_chinmo
X	3548353	X_3548353_SNP [dm3] X_3654320_SNP [dm6]	C	T	6.914e^-5	0.888	INTRON AstA-R1
3L	3785118	3L_3785118_SNP [dm3] 3L_3785118_SNP [dm6]	G	A	6.959e^-5	0.888	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2R	7554314	2R_7554314_SNP [dm3] 2R_11666809_SNP [dm6]	C	T	7.091e^-5	0.888	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	3489587	2L_3489587_SNP [dm3] 2L_3489587_SNP [dm6]	C	A	7.099e^-5	0.888	INTRON CG15414
2R	14165837	2R_14165837_DEL [dm3] 2R_18278332_DEL [dm6]	CGCCC	C	7.206e^-5	0.888	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
3L	8322064	3L_8322064_SNP [dm3] 3L_8328964_SNP [dm6]	A	G	7.333e^-5	0.888	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
X	12079989	X_12079989_SNP [dm3] X_12185956_SNP [dm6]	C	G	7.449e^-5	0.888	INTRON Ten-a
3L	23168568	3L_23168568_DEL [dm3] 3L_23175468_DEL [dm6]	CAGTCGAGTTACCCGAC...	C	7.546e^-5	0.888	INTRON CG34031	transposable element FlyBase
2R	12874793	2R_12874793_SNP [dm3] 2R_16987288_SNP [dm6]	G	A	7.570e^-5	0.888	INTRON Cbp53E
2L	12635676	2L_12635676_SNP [dm3] 2L_12635676_SNP [dm6]	G	A	7.617e^-5	0.888	INTRON Ref2
3R	20493675	3R_20493675_SNP [dm3] 3R_24667953_SNP [dm6]	C	T	7.618e^-5	0.888	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	7363705	2L_7363705_SNP [dm3] 2L_7363705_SNP [dm6]	G	A	7.660e^-5	0.888	UTR_5_PRIME Wnt10
3R	16528700	3R_16528700_SNP [dm3] 3R_20702978_SNP [dm6]	T	A	7.777e^-5	0.888	INTRON Oamb
3L	6291711	3L_6291711_SNP [dm3] 3L_6298611_SNP [dm6]	T	C	7.791e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14542307	2R_14542307_INS [dm3] 2R_18654802_INS [dm6]	A	AC	7.805e^-5	0.888	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	11924177	2R_11924177_SNP [dm3] 2R_16036672_SNP [dm6]	A	G	7.825e^-5	0.888	INTRON SP2353	TF binding site BDTNP1_TFBS_dl
3L	7197055	3L_7197055_SNP [dm3] 3L_7203955_SNP [dm6]	C	T	7.884e^-5	0.888	INTERGENIC
X	7657812	X_7657812_SNP [dm3] X_7763779_SNP [dm6]	A	C	7.992e^-5	0.888	INTERGENIC
2L	10049241	2L_10049241_SNP [dm3] 2L_10049241_SNP [dm6]	C	T	8.043e^-5	0.888	UPSTREAM CG33301 INTERGENIC
3R	16520414	3R_16520414_SNP [dm3] 3R_20694692_SNP [dm6]	T	A	8.120e^-5	0.888	INTRON Oamb
2L	8142567	2L_8142567_SNP [dm3] 2L_8142567_SNP [dm6]	T	G	8.153e^-5	0.888	UPSTREAM mir-4984 DOWNSTREAM CG42762 INTRON CG8552
2L	15149788	2L_15149788_SNP [dm3] 2L_15149788_SNP [dm6]	A	T	8.236e^-5	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19585638	2R_19585638_SNP [dm3] 2R_23698115_SNP [dm6]	C	A	8.319e^-5	0.888	UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	16528675	3R_16528675_SNP [dm3] 3R_20702953_SNP [dm6]	G	A	8.380e^-5	0.888	INTRON Oamb
3R	16528681	3R_16528681_SNP [dm3] 3R_20702959_SNP [dm6]	C	T	8.380e^-5	0.888	INTRON Oamb
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	8.435e^-5	0.888	UPSTREAM CG43244 INTERGENIC
3L	1199434	3L_1199434_SNP [dm3] 3L_1199434_SNP [dm6]	C	T	8.451e^-5	0.888	DOWNSTREAM Aplip1 INTERGENIC
3L	516204	3L_516204_SNP [dm3] 3L_516204_SNP [dm6]	A	T	8.464e^-5	0.888	INTRON klar
3L	8944700	3L_8944700_SNP [dm3] 3L_8951600_SNP [dm6]	A	C	8.548e^-5	0.888	INTRON orb2 & 1 other
3L	3845044	3L_3845044_SNP [dm3] 3L_3845044_SNP [dm6]	A	G	8.697e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	5602520	X_5602520_SNP [dm3] X_5708487_SNP [dm6]	C	T	8.729e^-5	0.888	SYNONYMOUS_CODING CG4096 UTR_3_PRIME CG4096 DOWNSTREAM CG33080	TF binding site mE1_TFBS_chinmo
2R	10265448	2R_10265448_INS [dm3] 2R_14377943_INS [dm6]	C	CC	8.756e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3R	16505497	3R_16505497_SNP [dm3] 3R_20679775_SNP [dm6]	G	A	8.794e^-5	0.888	DOWNSTREAM CR43452 INTERGENIC
2L	4146536	2L_4146536_SNP [dm3] 2L_4146536_SNP [dm6]	A	C	8.839e^-5	0.888	INTERGENIC
3R	16528999	3R_16528999_SNP [dm3] 3R_20703277_SNP [dm6]	T	C	8.926e^-5	0.888	INTRON Oamb
3R	16505487	3R_16505487_SNP [dm3] 3R_20679765_SNP [dm6]	C	G	9.025e^-5	0.888	DOWNSTREAM CR43452 INTERGENIC
2R	10265216	2R_10265216_SNP [dm3] 2R_14377711_SNP [dm6]	T	C	9.106e^-5	0.888	UPSTREAM Dh44-R1 INTERGENIC
3L	16731038	3L_16731038_SNP [dm3] 3L_16737938_SNP [dm6]	T	C	9.111e^-5	0.888	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13944549	2L_13944549_SNP [dm3] 2L_13944549_SNP [dm6]	T	A	9.120e^-5	0.888	DOWNSTREAM CG16884 INTRON Ance-3
X	8360890	X_8360890_SNP [dm3] X_8466857_SNP [dm6]	T	G	9.143e^-5	0.888	UPSTREAM CG33223 DOWNSTREAM CG12116 INTRON CG33223	TF binding site mE1_TFBS_kn mE1_TFBS_run
2L	7146156	2L_7146156_SNP [dm3] 2L_7146156_SNP [dm6]	A	C	9.151e^-5	0.888	DOWNSTREAM CR44612 INTRON Pvf3
2R	10843629	2R_10843629_SNP [dm3] 2R_14956124_SNP [dm6]	G	A	9.153e^-5	0.888	INTRON aPKC
3L	13778721	3L_13778721_SNP [dm3] 3L_13785621_SNP [dm6]	G	T	9.175e^-5	0.888	INTRON bru-3
2L	13944548	2L_13944548_SNP [dm3] 2L_13944548_SNP [dm6]	A	T	9.222e^-5	0.888	DOWNSTREAM CG16884 INTRON Ance-3
2L	7133468	2L_7133468_SNP [dm3] 2L_7133468_SNP [dm6]	T	A	9.230e^-5	0.888	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	9.306e^-5	0.888	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3844976	3L_3844976_SNP [dm3] 3L_3844976_SNP [dm6]	T	A	9.425e^-5	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	16606189	X_16606189_SNP [dm3] X_16712156_SNP [dm6]	T	C	9.594e^-5	0.888	NON_SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13944545	2L_13944545_INS [dm3] 2L_13944545_INS [dm6]	T	TTCC	9.606e^-5	0.888	DOWNSTREAM CG16884 INTRON Ance-3
3R	16528741	3R_16528741_SNP [dm3] 3R_20703019_SNP [dm6]	C	T	9.622e^-5	0.888	INTRON Oamb
2L	18751046	2L_18751046_SNP [dm3] 2L_18751046_SNP [dm6]	T	A	9.638e^-5	0.888	INTERGENIC
3L	1273290	3L_1273290_SNP [dm3] 3L_1273290_SNP [dm6]	A	T	9.688e^-5	0.888	INTRON CG9134
3L	6068237	3L_6068237_SNP [dm3] 3L_6075137_SNP [dm6]	A	G	9.824e^-5	0.888	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	13870488	X_13870488_SNP [dm3] X_13976455_SNP [dm6]	T	C	1.006e^-4	0.888	INTRON mamo
X	3547224	X_3547224_SNP [dm3] X_3653191_SNP [dm6]	G	A	1.007e^-4	0.888	INTRON AstA-R1
2L	4147030	2L_4147030_SNP [dm3] 2L_4147030_SNP [dm6]	C	T	1.015e^-4	0.888	INTERGENIC
2L	235762	2L_235762_SNP [dm3] 2L_235762_SNP [dm6]	G	A	1.022e^-4	0.888	SYNONYMOUS_CODING kis	TF binding site mE1_TFBS_sens
X	2691018	X_2691018_SNP [dm3] X_2796985_SNP [dm6]	C	A	1.025e^-4	0.888	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_eve mE1_TFBS_HSA
X	5345003	X_5345003_INS [dm3] X_5450970_INS [dm6]	A	AGGCACTCA	1.025e^-4	0.888	INTRON SPR
3R	4376889	3R_4376889_SNP [dm3] 3R_8551167_SNP [dm6]	C	T	1.028e^-4	0.888	INTERGENIC
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	1.032e^-4	0.888	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10069791	3L_10069791_SNP [dm3] 3L_10076691_SNP [dm6]	T	A	1.036e^-4	0.888	INTRON dpr6
2L	15135086	2L_15135086_SNP [dm3] 2L_15135086_SNP [dm6]	G	A	1.040e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17244514	X_17244514_SNP [dm3] X_17350481_SNP [dm6]	G	A	1.047e^-4	0.888	INTERGENIC
3L	14379016	3L_14379016_SNP [dm3] 3L_14385916_SNP [dm6]	G	T	1.061e^-4	0.888	INTERGENIC
2R	13599194	2R_13599194_SNP [dm3] 2R_17711689_SNP [dm6]	G	A	1.063e^-4	0.888	INTRON CG6424	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20017195	3R_20017195_SNP [dm3] 3R_24191473_SNP [dm6]	T	C	1.073e^-4	0.888	NON_SYNONYMOUS_CODING jnj
3R	17233703	3R_17233703_SNP [dm3] 3R_21407981_SNP [dm6]	C	T	1.081e^-4	0.888	INTRON CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	12456090	2R_12456090_SNP [dm3] 2R_16568585_SNP [dm6]	G	A	1.081e^-4	0.888	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
2L	18027540	2L_18027540_SNP [dm3] 2L_18027540_SNP [dm6]	G	A	1.087e^-4	0.888	INTRON rdo
X	15666533	X_15666533_SNP [dm3] X_15772500_SNP [dm6]	G	A	1.094e^-4	0.888	SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2R	10843505	2R_10843505_SNP [dm3] 2R_14956000_SNP [dm6]	T	A	1.094e^-4	0.888	INTRON aPKC
3R	17233735	3R_17233735_SNP [dm3] 3R_21408013_SNP [dm6]	G	A	1.096e^-4	0.888	NON_SYNONYMOUS_CODING CheB93a SPLICE_SITE_REGION CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3L	13089100	3L_13089100_SNP [dm3] 3L_13096000_SNP [dm6]	T	C	1.098e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7286728	2R_7286728_SNP [dm3] 2R_11399223_SNP [dm6]	G	A	1.102e^-4	0.888	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18097693	3L_18097693_SNP [dm3] 3L_18104593_SNP [dm6]	A	G	1.105e^-4	0.888	INTRON CG13698
2L	20474163	2L_20474163_SNP [dm3] 2L_20474163_SNP [dm6]	C	T	1.106e^-4	0.888	UPSTREAM CG43233 INTRON CR44980
3L	6068265	3L_6068265_SNP [dm3] 3L_6075165_SNP [dm6]	G	A	1.106e^-4	0.888	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	5811448	2L_5811448_SNP [dm3] 2L_5811448_SNP [dm6]	T	A	1.108e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
3R	16519098	3R_16519098_SNP [dm3] 3R_20693376_SNP [dm6]	T	C	1.109e^-4	0.888	SYNONYMOUS_CODING Oamb INTRON Oamb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5811396	2L_5811396_DEL [dm3] 2L_5811396_DEL [dm6]	GGTTCAACATACAATAG...	G	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
2L	5811424	2L_5811424_SNP [dm3] 2L_5811424_SNP [dm6]	G	T	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
2L	5811434	2L_5811434_SNP [dm3] 2L_5811434_SNP [dm6]	T	C	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
2L	5811439	2L_5811439_INS [dm3] 2L_5811439_INS [dm6]	A	AGAGTGT	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
2L	5811441	2L_5811441_SNP [dm3] 2L_5811441_SNP [dm6]	G	C	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
2L	5811445	2L_5811445_SNP [dm3] 2L_5811445_SNP [dm6]	T	C	1.122e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
3R	20493672	3R_20493672_SNP [dm3] 3R_24667950_SNP [dm6]	A	C	1.126e^-4	0.888	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
2L	6101749	2L_6101749_SNP [dm3] 2L_6101749_SNP [dm6]	T	A	1.127e^-4	0.888	UTR_5_PRIME stai
3R	846066	3R_846066_SNP [dm3] 3R_5020344_SNP [dm6]	C	G	1.131e^-4	0.888	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
2L	10270865	2L_10270865_SNP [dm3] 2L_10270865_SNP [dm6]	G	C	1.133e^-4	0.888	SYNONYMOUS_CODING Mulk DOWNSTREAM CG4957 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	14305453	2L_14305453_SNP [dm3] 2L_14305453_SNP [dm6]	C	T	1.136e^-4	0.888	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	20146604	2L_20146604_SNP [dm3] 2L_20146604_SNP [dm6]	G	A	1.138e^-4	0.888	INTERGENIC
2L	21312699	2L_21312699_SNP [dm3] 2L_21312699_SNP [dm6]	A	T	1.142e^-4	0.888	INTRON crc
3L	10534765	3L_10534765_SNP [dm3] 3L_10541665_SNP [dm6]	T	C	1.143e^-4	0.888	INTRON A2bp1
3L	13727541	3L_13727541_SNP [dm3] 3L_13734441_SNP [dm6]	A	G	1.146e^-4	0.888	INTRON bru-3
3R	25323203	3R_25323203_SNP [dm3] 3R_29497481_SNP [dm6]	C	T	1.155e^-4	0.888	SYNONYMOUS_CODING CG2010	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18028964	2L_18028964_SNP [dm3] 2L_18028964_SNP [dm6]	G	C	1.162e^-4	0.888	INTRON rdo
2R	12468163	2R_12468163_SNP [dm3] 2R_16580658_SNP [dm6]	G	T	1.173e^-4	0.888	START_GAINED Cdk4 UTR_5_PRIME Cdk4 UPSTREAM Cdk4 INTRON Cdk4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14379023	3L_14379023_SNP [dm3] 3L_14385923_SNP [dm6]	G	C	1.177e^-4	0.888	INTERGENIC
3R	8366144	3R_8366144_INS [dm3] 3R_12540422_INS [dm6]	G	AAGACGT	1.179e^-4	0.888	INTRON Octbeta3R
3R	8366146	3R_8366146_DEL [dm3] 3R_12540424_DEL [dm6]	CTTTAT	C	1.179e^-4	0.888	INTRON Octbeta3R
2R	18154366	2R_18154366_SNP [dm3] 2R_22266861_SNP [dm6]	T	G	1.180e^-4	0.888	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	3548056	X_3548056_SNP [dm3] X_3654023_SNP [dm6]	A	C	1.204e^-4	0.888	INTRON AstA-R1
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	1.215e^-4	0.888	INTERGENIC
2R	19482133	2R_19482133_SNP [dm3] 2R_23594610_SNP [dm6]	A	G	1.216e^-4	0.888	INTRON apt	TF binding site mE1_TFBS_sens
3L	3142238	3L_3142238_SNP [dm3] 3L_3142238_SNP [dm6]	A	T	1.230e^-4	0.888	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9027768	3L_9027768_SNP [dm3] 3L_9034668_SNP [dm6]	C	T	1.231e^-4	0.888	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14675277	3R_14675277_SNP [dm3] 3R_18849555_SNP [dm6]	T	C	1.232e^-4	0.888	UPSTREAM CG18208 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15149763	2L_15149763_SNP [dm3] 2L_15149763_SNP [dm6]	G	A	1.234e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16509099	3R_16509099_SNP [dm3] 3R_20683377_SNP [dm6]	C	T	1.244e^-4	0.888	INTERGENIC
3L	515103	3L_515103_SNP [dm3] 3L_515103_SNP [dm6]	A	C	1.246e^-4	0.888	INTRON klar
3L	10230695	3L_10230695_SNP [dm3] 3L_10237595_SNP [dm6]	G	A	1.263e^-4	0.888	DOWNSTREAM CR44542 INTERGENIC
2L	9172835	2L_9172835_SNP [dm3] 2L_9172835_SNP [dm6]	T	C	1.268e^-4	0.888	INTRON tai
3L	13724749	3L_13724749_SNP [dm3] 3L_13731649_SNP [dm6]	A	G	1.273e^-4	0.888	INTRON bru-3
2L	20474175	2L_20474175_SNP [dm3] 2L_20474175_SNP [dm6]	C	T	1.274e^-4	0.888	UPSTREAM CG43233 INTRON CR44980
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	1.277e^-4	0.888	INTRON CG7510
3L	13410752	3L_13410752_SNP [dm3] 3L_13417652_SNP [dm6]	A	G	1.287e^-4	0.888	SYNONYMOUS_CODING CG32121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18031186	2L_18031186_SNP [dm3] 2L_18031186_SNP [dm6]	C	A	1.293e^-4	0.888	INTRON rdo
3R	6724126	3R_6724126_SNP [dm3] 3R_10898404_SNP [dm6]	T	C	1.304e^-4	0.888	EXON CR45578	TF binding site mE1_TFBS_sbb
3L	12411702	3L_12411702_SNP [dm3] 3L_12418602_SNP [dm6]	C	T	1.308e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	18791888	3R_18791888_SNP [dm3] 3R_22966166_SNP [dm6]	C	A	1.309e^-4	0.888	UPSTREAM Tpl94D INTERGENIC
3L	18645429	3L_18645429_SNP [dm3] 3L_18652329_SNP [dm6]	A	C	1.317e^-4	0.888	INTRON MYPT-75D
3R	9610515	3R_9610515_SNP [dm3] 3R_13784793_SNP [dm6]	C	T	1.317e^-4	0.888	SYNONYMOUS_CODING Dip-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3489564	2L_3489564_SNP [dm3] 2L_3489564_SNP [dm6]	T	A	1.333e^-4	0.888	INTRON CG15414
2L	258659	2L_258659_SNP [dm3] 2L_258659_SNP [dm6]	T	G	1.336e^-4	0.888	INTRON CG3645
3L	14379034	3L_14379034_SNP [dm3] 3L_14385934_SNP [dm6]	G	T	1.340e^-4	0.888	INTERGENIC
2L	9279998	2L_9279998_SNP [dm3] 2L_9279998_SNP [dm6]	G	T	1.341e^-4	0.888	INTRON Ggamma30A
2L	3816483	2L_3816483_SNP [dm3] 2L_3816483_SNP [dm6]	T	G	1.345e^-4	0.888	DOWNSTREAM CR44076 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	17785992	3R_17785992_SNP [dm3] 3R_21960270_SNP [dm6]	A	T	1.348e^-4	0.888	INTRON Eip93F
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	1.363e^-4	0.888	DOWNSTREAM CR44315 INTERGENIC
3R	16514202	3R_16514202_SNP [dm3] 3R_20688480_SNP [dm6]	T	A	1.367e^-4	0.888	DOWNSTREAM Oamb INTERGENIC
2L	19075911	2L_19075911_SNP [dm3] 2L_19075911_SNP [dm6]	C	A	1.384e^-4	0.888	UPSTREAM CR33315 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	513473	3L_513473_SNP [dm3] 3L_513473_SNP [dm6]	C	T	1.397e^-4	0.888	INTRON klar
3L	10996371	3L_10996371_SNP [dm3] 3L_11003271_SNP [dm6]	C	G	1.401e^-4	0.888	INTRON klu
X	3546118	X_3546118_SNP [dm3] X_3652085_SNP [dm6]	C	A	1.415e^-4	0.888	INTRON AstA-R1
2R	7043067	2R_7043067_SNP [dm3] 2R_11155562_SNP [dm6]	A	G	1.416e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
3R	22067065	3R_22067065_SNP [dm3] 3R_26241343_SNP [dm6]	T	C	1.422e^-4	0.888	INTRON CR42745
2R	14220275	2R_14220275_SNP [dm3] 2R_18332770_SNP [dm6]	A	T	1.431e^-4	0.888	INTRON sbb	TF binding site mE1_TFBS_run
3L	14378205	3L_14378205_SNP [dm3] 3L_14385105_SNP [dm6]	A	G	1.435e^-4	0.888	INTERGENIC
X	3548052	X_3548052_SNP [dm3] X_3654019_SNP [dm6]	T	C	1.441e^-4	0.888	INTRON AstA-R1
3R	17233740	3R_17233740_SNP [dm3] 3R_21408018_SNP [dm6]	T	A	1.450e^-4	0.888	SYNONYMOUS_CODING CheB93a	TF binding site BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	15149706	2L_15149706_SNP [dm3] 2L_15149706_SNP [dm6]	T	C	1.454e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7712676	3L_7712676_SNP [dm3] 3L_7719576_SNP [dm6]	G	A	1.459e^-4	0.888	INTRON CG32373 & 1 other
2L	7133498	2L_7133498_SNP [dm3] 2L_7133498_SNP [dm6]	C	A	1.474e^-4	0.888	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2830132	X_2830132_SNP [dm3] X_2936099_SNP [dm6]	T	C	1.478e^-4	0.888	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
X	13870282	X_13870282_SNP [dm3] X_13976249_SNP [dm6]	T	C	1.510e^-4	0.888	INTRON mamo
X	18717955	X_18717955_INS [dm3] X_18823922_INS [dm6]	T	TAAAATATT	1.534e^-4	0.888	INTRON CG42450
3L	13727694	3L_13727694_SNP [dm3] 3L_13734594_SNP [dm6]	C	G	1.534e^-4	0.888	INTRON bru-3
2L	15998100	2L_15998100_INS [dm3] 2L_15998100_INS [dm6]	T	TA	1.557e^-4	0.888	INTERGENIC
X	3548496	X_3548496_SNP [dm3] X_3654463_SNP [dm6]	A	G	1.569e^-4	0.888	INTRON AstA-R1
3L	2559584	3L_2559584_SNP [dm3] 3L_2559584_SNP [dm6]	T	A	1.570e^-4	0.888	INTRON msn
3L	3754682	3L_3754682_SNP [dm3] 3L_3754682_SNP [dm6]	C	A	1.570e^-4	0.888	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
X	9289888	X_9289888_SNP [dm3] X_9395855_SNP [dm6]	C	A	1.576e^-4	0.888	INTRON mgl
3R	25115974	3R_25115974_SNP [dm3] 3R_29290252_SNP [dm6]	G	A	1.577e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25115975	3R_25115975_SNP [dm3] 3R_29290253_SNP [dm6]	C	T	1.577e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	3548546	X_3548546_SNP [dm3] X_3654513_SNP [dm6]	G	A	1.593e^-4	0.888	INTRON AstA-R1
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	1.597e^-4	0.888	INTERGENIC	silencer mE1_HDAC_PRE
3L	16731029	3L_16731029_SNP [dm3] 3L_16737929_SNP [dm6]	T	C	1.597e^-4	0.888	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3473752	X_3473752_SNP [dm3] X_3579719_SNP [dm6]	C	T	1.600e^-4	0.888	INTRON AstA-R1
3L	16302829	3L_16302829_SNP [dm3] 3L_16309729_SNP [dm6]	A	G	1.621e^-4	0.888	INTRON CR32160
2L	12715264	2L_12715264_SNP [dm3] 2L_12715264_SNP [dm6]	G	C	1.622e^-4	0.888	NON_SYNONYMOUS_CODING CG5792 INTRON CG5792
3L	3845577	3L_3845577_SNP [dm3] 3L_3845577_SNP [dm6]	G	A	1.623e^-4	0.888	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	1.626e^-4	0.888	INTERGENIC
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	1.631e^-4	0.888	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	11333285	3L_11333285_SNP [dm3] 3L_11340185_SNP [dm6]	G	C	1.634e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	7500896	3R_7500896_SNP [dm3] 3R_11675174_SNP [dm6]	A	G	1.648e^-4	0.888	SYNONYMOUS_CODING CG18476 DOWNSTREAM CG14715	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13620003	2L_13620003_INS [dm3] 2L_13620003_INS [dm6]	A	AGGTATAT	1.648e^-4	0.888	INTRON kuz
X	10886675	X_10886675_SNP [dm3] X_10992642_SNP [dm6]	C	T	1.649e^-4	0.888	INTRON CG42339
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	1.651e^-4	0.888	UPSTREAM hoe1 INTRON hoe1
X	5344988	X_5344988_SNP [dm3] X_5450955_SNP [dm6]	G	A	1.652e^-4	0.888	INTRON SPR
3L	3142357	3L_3142357_SNP [dm3] 3L_3142357_SNP [dm6]	A	G	1.655e^-4	0.888	INTRON CG11537	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4326011	2L_4326011_SNP [dm3] 2L_4326011_SNP [dm6]	A	G	1.656e^-4	0.888	INTRON CG16857
3R	13128595	3R_13128595_SNP [dm3] 3R_17302873_SNP [dm6]	T	A	1.657e^-4	0.888	INTERGENIC
2R	12260777	2R_12260777_SNP [dm3] 2R_16373272_SNP [dm6]	A	T	1.662e^-4	0.888	INTERGENIC
3L	6298143	3L_6298143_SNP [dm3] 3L_6305043_SNP [dm6]	C	T	1.662e^-4	0.888	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
2R	8339434	2R_8339434_SNP [dm3] 2R_12451929_SNP [dm6]	G	T	1.664e^-4	0.888	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3867823	3L_3867823_SNP [dm3] 3L_3867823_SNP [dm6]	G	C	1.667e^-4	0.888	INTERGENIC
2R	2853203	2R_2853203_INS [dm3] 2R_6965698_INS [dm6]	T	ATA	1.672e^-4	0.888	INTRON mim & 1 other
3L	5664450	3L_5664450_SNP [dm3] 3L_5671350_SNP [dm6]	G	T	1.676e^-4	0.888	INTRON sif
2L	3509817	2L_3509817_SNP [dm3] 2L_3509817_SNP [dm6]	A	G	1.676e^-4	0.888	SYNONYMOUS_CODING CG31954 DOWNSTREAM CR45299 & 2 others
X	5344995	X_5344995_SNP [dm3] X_5450962_SNP [dm6]	A	T	1.680e^-4	0.888	INTRON SPR
X	17813637	X_17813637_SNP [dm3] X_17919604_SNP [dm6]	T	G	1.681e^-4	0.888	INTRON CG6847
X	3548381	X_3548381_SNP [dm3] X_3654348_SNP [dm6]	T	A	1.689e^-4	0.888	INTRON AstA-R1
2R	5305519	2R_5305519_SNP [dm3] 2R_9418014_SNP [dm6]	C	T	1.690e^-4	0.888	DOWNSTREAM wun2 INTERGENIC
2L	2079588	2L_2079588_SNP [dm3] 2L_2079588_SNP [dm6]	C	A	1.692e^-4	0.888	UPSTREAM CG12674 INTRON dpr3
3R	15777084	3R_15777084_SNP [dm3] 3R_19951362_SNP [dm6]	A	T	1.704e^-4	0.888	INTRON Hs6st
3R	16528539	3R_16528539_SNP [dm3] 3R_20702817_SNP [dm6]	G	T	1.706e^-4	0.888	INTRON Oamb
3L	10488697	3L_10488697_SNP [dm3] 3L_10495597_SNP [dm6]	C	T	1.708e^-4	0.888	INTRON A2bp1
2R	4493441	2R_4493441_SNP [dm3] 2R_8605936_SNP [dm6]	C	T	1.711e^-4	0.888	INTRON rgr	TF binding site mE1_TFBS_cad
2L	12454619	2L_12454619_SNP [dm3] 2L_12454619_SNP [dm6]	C	G	1.713e^-4	0.888	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2R	1745389	2R_1745389_SNP [dm3] 2R_5857884_SNP [dm6]	A	T	1.724e^-4	0.888	INTRON dpr12
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	1.730e^-4	0.888	INTRON CG5455
2L	6197565	2L_6197565_SNP [dm3] 2L_6197565_SNP [dm6]	C	T	1.732e^-4	0.888	INTRON CG34380	TF binding site BDTNP1_TFBS_twi
2L	3850781	2L_3850781_SNP [dm3] 2L_3850781_SNP [dm6]	G	A	1.734e^-4	0.888	INTERGENIC
2R	10701770	2R_10701770_SNP [dm3] 2R_14814265_SNP [dm6]	T	A	1.746e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Trl
X	3547110	X_3547110_SNP [dm3] X_3653077_SNP [dm6]	A	G	1.746e^-4	0.888	INTRON AstA-R1
3R	14149315	3R_14149315_SNP [dm3] 3R_18323593_SNP [dm6]	G	A	1.755e^-4	0.888	INTRON CG31235
3L	10069792	3L_10069792_SNP [dm3] 3L_10076692_SNP [dm6]	T	A	1.755e^-4	0.888	INTRON dpr6
3L	2830201	3L_2830201_SNP [dm3] 3L_2830201_SNP [dm6]	A	T	1.767e^-4	0.888	INTRON CG43444
X	1325271	X_1325271_DEL [dm3] X_1431238_DEL [dm6]	AA	A	1.777e^-4	0.888	INTRON futsch	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo
3L	13725172	3L_13725172_SNP [dm3] 3L_13732072_SNP [dm6]	G	A	1.783e^-4	0.888	INTRON bru-3
2L	5811432	2L_5811432_SNP [dm3] 2L_5811432_SNP [dm6]	T	C	1.787e^-4	0.888	UPSTREAM CG43307 DOWNSTREAM CR44576 INTERGENIC
3R	26940100	3R_26940100_SNP [dm3] 3R_31114378_SNP [dm6]	T	C	1.788e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_inv
2L	258656	2L_258656_SNP [dm3] 2L_258656_SNP [dm6]	T	C	1.791e^-4	0.888	INTRON CG3645
2R	19719293	2R_19719293_SNP [dm3] 2R_23831770_SNP [dm6]	C	G	1.792e^-4	0.888	INTRON CG5549
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	1.796e^-4	0.888	UPSTREAM CR44542 INTERGENIC
2L	15135088	2L_15135088_SNP [dm3] 2L_15135088_SNP [dm6]	G	C	1.800e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8988904	3L_8988904_SNP [dm3] 3L_8995804_SNP [dm6]	A	G	1.802e^-4	0.888	UTR_5_PRIME smg INTRON smg
3L	10040767	3L_10040767_SNP [dm3] 3L_10047667_SNP [dm6]	C	G	1.811e^-4	0.888	INTRON dpr6
2R	15693575	2R_15693575_SNP [dm3] 2R_19806070_SNP [dm6]	C	G	1.813e^-4	0.888	INTERGENIC
X	3548471	X_3548471_SNP [dm3] X_3654438_SNP [dm6]	T	C	1.833e^-4	0.888	INTRON AstA-R1
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	1.841e^-4	0.888	SYNONYMOUS_CODING CG7716
3R	4352401	3R_4352401_SNP [dm3] 3R_8526679_SNP [dm6]	T	A	1.844e^-4	0.888	DOWNSTREAM CG31259 INTERGENIC
3L	10842600	3L_10842600_SNP [dm3] 3L_10849500_SNP [dm6]	A	G	1.852e^-4	0.888	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6888954	2L_6888954_SNP [dm3] 2L_6888954_SNP [dm6]	T	A	1.853e^-4	0.888	INTRON Nlg2
3L	22964441	3L_22964441_SNP [dm3] 3L_22971341_SNP [dm6]	G	A	1.864e^-4	0.888	INTERGENIC
2R	10265183	2R_10265183_SNP [dm3] 2R_14377678_SNP [dm6]	T	C	1.868e^-4	0.888	UPSTREAM Dh44-R1 INTERGENIC
3L	16731023	3L_16731023_SNP [dm3] 3L_16737923_SNP [dm6]	C	T	1.872e^-4	0.888	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16731026	3L_16731026_SNP [dm3] 3L_16737926_SNP [dm6]	C	A	1.872e^-4	0.888	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6997101	3L_6997101_SNP [dm3] 3L_7004001_SNP [dm6]	G	T	1.879e^-4	0.888	INTRON Mp
X	3546696	X_3546696_SNP [dm3] X_3652663_SNP [dm6]	A	C	1.883e^-4	0.888	INTRON AstA-R1
2L	6999242	2L_6999242_SNP [dm3] 2L_6999242_SNP [dm6]	G	A	1.884e^-4	0.888	INTRON uif
3R	13447455	3R_13447455_SNP [dm3] 3R_17621733_SNP [dm6]	C	T	1.885e^-4	0.888	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
X	19377707	X_19377707_INS [dm3] X_19483674_INS [dm6]	T	TT	1.894e^-4	0.888	INTRON Nat1
3L	7510766	3L_7510766_SNP [dm3] 3L_7517666_SNP [dm6]	C	A	1.902e^-4	0.888	DOWNSTREAM CG7546 INTERGENIC
2L	16911157	2L_16911157_SNP [dm3] 2L_16911157_SNP [dm6]	C	T	1.903e^-4	0.888	SYNONYMOUS_CODING tweek UPSTREAM ApepP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23004915	3R_23004915_SNP [dm3] 3R_27179193_SNP [dm6]	G	A	1.906e^-4	0.888	INTRON Ser
X	3553619	X_3553619_DEL [dm3] X_3659586_DEL [dm6]	GGC	G	1.912e^-4	0.888	INTRON AstA-R1
3R	20493749	3R_20493749_SNP [dm3] 3R_24668027_SNP [dm6]	G	T	1.921e^-4	0.888	UPSTREAM slo INTRON slo	regulatory region REDfly_CRMs
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	1.923e^-4	0.888	INTRON Pdp1
2R	11920727	2R_11920727_INS [dm3] 2R_16033222_INS [dm6]	A	AGA	1.925e^-4	0.888	INTRON SP2353
3R	26993447	3R_26993447_SNP [dm3] 3R_31167725_SNP [dm6]	C	G	1.928e^-4	0.888	INTRON Gycbeta100B & 1 other
3L	15796293	3L_15796293_SNP [dm3] 3L_15803193_SNP [dm6]	C	T	1.928e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19787719	2R_19787719_SNP [dm3] 2R_23900196_SNP [dm6]	T	C	1.933e^-4	0.888	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo
3R	17116277	3R_17116277_SNP [dm3] 3R_21290555_SNP [dm6]	T	C	1.945e^-4	0.888	INTRON SIFaR
2L	16017617	2L_16017617_SNP [dm3] 2L_16017617_SNP [dm6]	G	A	1.951e^-4	0.888	INTRON beat-Ic
X	16606212	X_16606212_SNP [dm3] X_16712179_SNP [dm6]	C	T	1.956e^-4	0.888	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12966453	2R_12966453_SNP [dm3] 2R_17078948_SNP [dm6]	A	C	1.960e^-4	0.888	INTRON CG30460
X	7322037	X_7322037_SNP [dm3] X_7428004_SNP [dm6]	C	A	1.961e^-4	0.888	INTERGENIC
2R	12260864	2R_12260864_SNP [dm3] 2R_16373359_SNP [dm6]	C	A	1.962e^-4	0.888	INTERGENIC
2R	12260866	2R_12260866_SNP [dm3] 2R_16373361_SNP [dm6]	A	T	1.962e^-4	0.888	INTERGENIC
3L	5301727	3L_5301727_SNP [dm3] 3L_5308627_SNP [dm6]	A	T	1.964e^-4	0.888	INTERGENIC
2L	16944520	2L_16944520_SNP [dm3] 2L_16944520_SNP [dm6]	G	A	1.965e^-4	0.888	DOWNSTREAM CR43053 INTERGENIC
3L	16204400	3L_16204400_SNP [dm3] 3L_16211300_SNP [dm6]	T	C	1.985e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6999271	2L_6999271_SNP [dm3] 2L_6999271_SNP [dm6]	G	C	1.989e^-4	0.888	INTRON uif
3L	3845018	3L_3845018_SNP [dm3] 3L_3845018_SNP [dm6]	T	A	1.991e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	26151939	3R_26151939_SNP [dm3] 3R_30326217_SNP [dm6]	G	A	1.992e^-4	0.888	INTRON hdc	TF binding site mE1_TFBS_chinmo
X	14710651	X_14710651_SNP [dm3] X_14816618_SNP [dm6]	A	C	1.996e^-4	0.888	INTRON rut
2L	10431345	2L_10431345_SNP [dm3] 2L_10431345_SNP [dm6]	A	C	2.001e^-4	0.888	UTR_5_PRIME TfIIB UPSTREAM CG5343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10565363	3L_10565363_SNP [dm3] 3L_10572263_SNP [dm6]	C	A	2.002e^-4	0.888	INTRON A2bp1
3L	18605442	3L_18605442_SNP [dm3] 3L_18612342_SNP [dm6]	T	C	2.010e^-4	0.888	SYNONYMOUS_CODING CG32199 DOWNSTREAM CG32201 INTRON CG4174 & 1 other
2L	15135058	2L_15135058_SNP [dm3] 2L_15135058_SNP [dm6]	A	C	2.011e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4288628	3L_4288628_SNP [dm3] 3L_4288628_SNP [dm6]	G	A	2.021e^-4	0.888	UPSTREAM Hexo1 DOWNSTREAM TfIIEbeta INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11741324	X_11741324_SNP [dm3] X_11847291_SNP [dm6]	T	A	2.021e^-4	0.888	INTERGENIC
X	908567	X_908567_SNP [dm3] X_1014534_SNP [dm6]	C	G	2.029e^-4	0.888	UTR_3_PRIME CG11638 INTRON su_w[a]_
2L	20417951	2L_20417951_SNP [dm3] 2L_20417951_SNP [dm6]	A	T	2.033e^-4	0.888	UPSTREAM snoRNA:Psi18S-525a & 3 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4145075	2L_4145075_SNP [dm3] 2L_4145075_SNP [dm6]	T	A	2.034e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3546025	X_3546025_SNP [dm3] X_3651992_SNP [dm6]	A	G	2.063e^-4	0.888	INTRON AstA-R1
3R	16504689	3R_16504689_SNP [dm3] 3R_20678967_SNP [dm6]	A	C	2.068e^-4	0.888	EXON CR43452
3R	16515719	3R_16515719_SNP [dm3] 3R_20689997_SNP [dm6]	A	G	2.070e^-4	0.888	NON_SYNONYMOUS_CODING Oamb UTR_3_PRIME Oamb	TF binding site mE1_TFBS_chinmo
X	18717963	X_18717963_DEL [dm3] X_18823930_DEL [dm6]	TT	T	2.071e^-4	0.888	INTRON CG42450
X	9934997	X_9934997_SNP [dm3] X_10040964_SNP [dm6]	A	G	2.075e^-4	0.888	SYNONYMOUS_CODING Cht6 INTRON Cht6
3R	7379741	3R_7379741_SNP [dm3] 3R_11554019_SNP [dm6]	A	T	2.075e^-4	0.888	UPSTREAM CG14708 INTERGENIC
2R	8925194	2R_8925194_SNP [dm3] 2R_13037689_SNP [dm6]	G	T	2.083e^-4	0.888	INTERGENIC
3L	13730196	3L_13730196_SNP [dm3] 3L_13737096_SNP [dm6]	A	G	2.084e^-4	0.888	INTRON bru-3	TF binding site mE1_TFBS_ftz_f1
3L	7944683	3L_7944683_SNP [dm3] 3L_7951583_SNP [dm6]	A	G	2.088e^-4	0.888	DOWNSTREAM exex INTERGENIC
3R	15949654	3R_15949654_SNP [dm3] 3R_20123932_SNP [dm6]	G	A	2.108e^-4	0.888	INTERGENIC
2R	10701777	2R_10701777_DEL [dm3] 2R_14814272_DEL [dm6]	TC	A	2.113e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3844981	3L_3844981_SNP [dm3] 3L_3844981_SNP [dm6]	A	T	2.124e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
3R	12568751	3R_12568751_SNP [dm3] 3R_16743029_SNP [dm6]	C	T	2.124e^-4	0.888	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	16814957	2R_16814957_SNP [dm3] 2R_20927452_SNP [dm6]	A	G	2.127e^-4	0.888	INTRON Rx
3L	9438509	3L_9438509_SNP [dm3] 3L_9445409_SNP [dm6]	C	T	2.130e^-4	0.888	INTRON CG33926
3L	8979964	3L_8979964_SNP [dm3] 3L_8986864_SNP [dm6]	A	G	2.143e^-4	0.888	UTR_5_PRIME CG5068 UPSTREAM Galk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	5006060	2L_5006060_SNP [dm3] 2L_5006060_SNP [dm6]	T	A	2.146e^-4	0.888	INTRON Rtnl1
2L	3283559	2L_3283559_SNP [dm3] 2L_3283559_SNP [dm6]	G	A	2.149e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18390972	3R_18390972_SNP [dm3] 3R_22565250_SNP [dm6]	G	A	2.152e^-4	0.888	INTERGENIC
3R	13557899	3R_13557899_SNP [dm3] 3R_17732177_SNP [dm6]	C	T	2.153e^-4	0.888	SYNONYMOUS_CODING Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	13447469	3R_13447469_SNP [dm3] 3R_17621747_SNP [dm6]	C	G	2.154e^-4	0.888	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3R	21961529	3R_21961529_SNP [dm3] 3R_26135807_SNP [dm6]	T	C	2.163e^-4	0.888	SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	4371897	3R_4371897_SNP [dm3] 3R_8546175_SNP [dm6]	C	T	2.169e^-4	0.888	UPSTREAM CR45574 DOWNSTREAM CR45575 INTERGENIC
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	2.176e^-4	0.888	DOWNSTREAM CG6974 & 1 other INTERGENIC
3L	6537557	3L_6537557_SNP [dm3] 3L_6544457_SNP [dm6]	T	C	2.181e^-4	0.888	INTRON sfl
3R	21238207	3R_21238207_SNP [dm3] 3R_25412485_SNP [dm6]	A	G	2.182e^-4	0.888	INTRON Fur1
2R	9685404	2R_9685404_SNP [dm3] 2R_13797899_SNP [dm6]	A	T	2.183e^-4	0.888	INTRON Cpr50Cb
3L	4428307	3L_4428307_INS [dm3] 3L_4428307_INS [dm6]	A	AA	2.193e^-4	0.888	INTERGENIC
2L	9173115	2L_9173115_DEL [dm3] 2L_9173115_DEL [dm6]	AA	A	2.197e^-4	0.888	INTRON tai
3R	26870389	3R_26870389_SNP [dm3] 3R_31044667_SNP [dm6]	T	A	2.200e^-4	0.888	SYNONYMOUS_CODING CG33920 INTRON CanA1
2L	1989030	2L_1989030_SNP [dm3] 2L_1989030_SNP [dm6]	A	T	2.214e^-4	0.888	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC
3R	13447342	3R_13447342_SNP [dm3] 3R_17621620_SNP [dm6]	G	A	2.223e^-4	0.888	NON_SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	10972448	3L_10972448_INS [dm3] 3L_10979348_INS [dm6]	G	GT	2.224e^-4	0.888	INTERGENIC
2L	16359588	2L_16359588_SNP [dm3] 2L_16359588_SNP [dm6]	T	C	2.225e^-4	0.888	INTERGENIC
X	11904103	X_11904103_SNP [dm3] X_12010070_SNP [dm6]	G	A	2.228e^-4	0.888	UTR_3_PRIME CG1492 DOWNSTREAM CG1806
3L	18947080	3L_18947080_SNP [dm3] 3L_18953980_SNP [dm6]	A	G	2.232e^-4	0.888	INTRON CG6836
2L	4530745	2L_4530745_SNP [dm3] 2L_4530745_SNP [dm6]	A	T	2.234e^-4	0.888	INTRON dp
2L	18249785	2L_18249785_SNP [dm3] 2L_18249785_SNP [dm6]	C	A	2.240e^-4	0.888	INTRON CG42750
X	20554931	X_20554931_DEL [dm3] X_20683904_DEL [dm6]	CTTAGA	T	2.261e^-4	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	8189377	2L_8189377_SNP [dm3] 2L_8189377_SNP [dm6]	A	G	2.265e^-4	0.888	UTR_3_PRIME Piezo DOWNSTREAM CG34134
3R	13447685	3R_13447685_SNP [dm3] 3R_17621963_SNP [dm6]	A	G	2.269e^-4	0.888	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
2R	6893841	2R_6893841_SNP [dm3] 2R_11006336_SNP [dm6]	A	G	2.272e^-4	0.888	INTRON luna
2R	2699618	2R_2699618_SNP [dm3] 2R_6812113_SNP [dm6]	C	T	2.273e^-4	0.888	UPSTREAM koi INTRON koi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20554724	X_20554724_SNP [dm3] X_20683697_SNP [dm6]	G	A	2.273e^-4	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3L	6022941	3L_6022941_SNP [dm3] 3L_6029841_SNP [dm6]	A	G	2.279e^-4	0.888	INTERGENIC
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	2.289e^-4	0.888	UPSTREAM hoe1 INTRON hoe1
3R	9691764	3R_9691764_SNP [dm3] 3R_13866042_SNP [dm6]	G	A	2.306e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	9691783	3R_9691783_SNP [dm3] 3R_13866061_SNP [dm6]	T	A	2.306e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	13733400	3L_13733400_SNP [dm3] 3L_13740300_SNP [dm6]	C	T	2.325e^-4	0.888	INTRON bru-3
3L	10329901	3L_10329901_SNP [dm3] 3L_10336801_SNP [dm6]	A	G	2.327e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
2L	5561268	2L_5561268_SNP [dm3] 2L_5561268_SNP [dm6]	C	T	2.336e^-4	0.888	SYNONYMOUS_CODING GluRIIB
2L	18248887	2L_18248887_SNP [dm3] 2L_18248887_SNP [dm6]	T	A	2.342e^-4	0.888	INTRON CG42750
X	17509770	X_17509770_INS [dm3] X_17615737_INS [dm6]	G	GGGAG	2.342e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10069798	3L_10069798_SNP [dm3] 3L_10076698_SNP [dm6]	G	A	2.343e^-4	0.888	INTRON dpr6
2R	13140227	2R_13140227_DEL [dm3] 2R_17252722_DEL [dm6]	TT	T	2.350e^-4	0.888	INTRON mbl	TF binding site BDTNP1_TFBS_twi
2L	18248824	2L_18248824_SNP [dm3] 2L_18248824_SNP [dm6]	C	T	2.353e^-4	0.888	INTRON CG42750
3L	10069784	3L_10069784_SNP [dm3] 3L_10076684_SNP [dm6]	T	G	2.378e^-4	0.888	INTRON dpr6
3L	8728539	3L_8728539_SNP [dm3] 3L_8735439_SNP [dm6]	C	A	2.378e^-4	0.888	INTRON Prm
3R	16498706	3R_16498706_SNP [dm3] 3R_20672984_SNP [dm6]	C	T	2.379e^-4	0.888	DOWNSTREAM Cpr92F INTERGENIC
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	2.380e^-4	0.888	INTRON jnj
3L	21844930	3L_21844930_SNP [dm3] 3L_21851830_SNP [dm6]	C	T	2.392e^-4	0.888	INTRON mub
2R	7277868	2R_7277868_SNP [dm3] 2R_11390363_SNP [dm6]	A	G	2.403e^-4	0.888	INTRON sprt
2L	15144500	2L_15144500_SNP [dm3] 2L_15144500_SNP [dm6]	C	T	2.414e^-4	0.888	INTERGENIC
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	2.416e^-4	0.888	INTERGENIC
2L	2894596	2L_2894596_SNP [dm3] 2L_2894596_SNP [dm6]	A	G	2.416e^-4	0.888	INTRON lilli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22270844	3R_22270844_SNP [dm3] 3R_26445122_SNP [dm6]	A	G	2.420e^-4	0.888	INTRON tx
3R	7500593	3R_7500593_SNP [dm3] 3R_11674871_SNP [dm6]	C	T	2.428e^-4	0.888	UTR_3_PRIME CG14715 DOWNSTREAM CG18476 & 1 other	TF binding site mE1_TFBS_sens
3R	22748374	3R_22748374_DEL [dm3] 3R_26922652_DEL [dm6]	GAG	G	2.432e^-4	0.888	INTRON sda
3L	6524425	3L_6524425_SNP [dm3] 3L_6531325_SNP [dm6]	T	G	2.432e^-4	0.888	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
2R	14489598	2R_14489598_SNP [dm3] 2R_18602093_SNP [dm6]	C	T	2.441e^-4	0.888	INTRON GEFmeso
2R	14075701	2R_14075701_SNP [dm3] 2R_18188196_SNP [dm6]	G	C	2.444e^-4	0.888	NON_SYNONYMOUS_CODING CG14499 UPSTREAM CG14500 INTRON CG33958	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3548438	X_3548438_SNP [dm3] X_3654405_SNP [dm6]	G	A	2.445e^-4	0.888	INTRON AstA-R1
3L	13729228	3L_13729228_SNP [dm3] 3L_13736128_SNP [dm6]	T	C	2.463e^-4	0.888	INTRON bru-3
2R	4493405	2R_4493405_SNP [dm3] 2R_8605900_SNP [dm6]	A	T	2.471e^-4	0.888	INTRON rgr	TF binding site mE1_TFBS_cad
3R	5440687	3R_5440687_INS [dm3] 3R_9614965_INS [dm6]	A	AAA	2.473e^-4	0.888	INTRON CG8312
X	3547095	X_3547095_DEL [dm3] X_3653062_DEL [dm6]	TT	T	2.482e^-4	0.888	INTRON AstA-R1
2L	12697127	2L_12697127_SNP [dm3] 2L_12697127_SNP [dm6]	G	A	2.488e^-4	0.888	NON_SYNONYMOUS_CODING CG5781 INTRON PICK1	TF binding site mE1_TFBS_cad
3L	514986	3L_514986_SNP [dm3] 3L_514986_SNP [dm6]	G	C	2.491e^-4	0.888	INTRON klar
3L	3867811	3L_3867811_SNP [dm3] 3L_3867811_SNP [dm6]	A	T	2.491e^-4	0.888	INTERGENIC
3R	18948909	3R_18948909_SNP [dm3] 3R_23123187_SNP [dm6]	G	A	2.497e^-4	0.888	SYNONYMOUS_CODING CenB1A DOWNSTREAM CG31365	TF binding site mE1_TFBS_sens
3L	14379017	3L_14379017_SNP [dm3] 3L_14385917_SNP [dm6]	A	C	2.503e^-4	0.888	INTERGENIC
3L	15682081	3L_15682081_SNP [dm3] 3L_15688981_SNP [dm6]	A	T	2.504e^-4	0.888	SYNONYMOUS_CODING CG34451	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6011066	3L_6011066_SNP [dm3] 3L_6017966_SNP [dm6]	G	C	2.509e^-4	0.888	INTRON PVRAP
2R	12260751	2R_12260751_SNP [dm3] 2R_16373246_SNP [dm6]	T	A	2.513e^-4	0.888	INTERGENIC
2L	17126825	2L_17126825_DEL [dm3] 2L_17126825_DEL [dm6]	TG	T	2.516e^-4	0.888	UPSTREAM CG31784 INTERGENIC
2R	13628057	2R_13628057_SNP [dm3] 2R_17740552_SNP [dm6]	C	G	2.523e^-4	0.888	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	897596	3L_897596_SNP [dm3] 3L_897596_SNP [dm6]	C	A	2.529e^-4	0.888	SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056 INTRON CG34057
2R	14265489	2R_14265489_DEL [dm3] 2R_18377984_DEL [dm6]	CATA	C	2.533e^-4	0.888	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2492333	3L_2492333_SNP [dm3] 3L_2492333_SNP [dm6]	A	T	2.536e^-4	0.888	UTR_3_PRIME CG1146 INTRON CG45186
X	17326773	X_17326773_SNP [dm3] X_17432740_SNP [dm6]	A	G	2.538e^-4	0.888	INTRON CG12994
2L	7490336	2L_7490336_SNP [dm3] 2L_7490336_SNP [dm6]	C	T	2.542e^-4	0.888	INTRON Ziz
3L	5302045	3L_5302045_SNP [dm3] 3L_5308945_SNP [dm6]	C	T	2.550e^-4	0.888	INTERGENIC
2L	10787552	2L_10787552_SNP [dm3] 2L_10787552_SNP [dm6]	C	G	2.551e^-4	0.888	INTRON CG31869
3L	6068213	3L_6068213_SNP [dm3] 3L_6075113_SNP [dm6]	G	C	2.567e^-4	0.888	NON_SYNONYMOUS_CODING CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10910026	X_10910026_SNP [dm3] X_11015993_SNP [dm6]	C	G	2.571e^-4	0.888	INTRON CG42339	TF binding site mE1_TFBS_inv
3L	17404493	3L_17404493_SNP [dm3] 3L_17411393_SNP [dm6]	T	A	2.582e^-4	0.888	INTRON blot	TF binding site mE1_TFBS_kn
3R	26603570	3R_26603570_SNP [dm3] 3R_30777848_SNP [dm6]	T	A	2.584e^-4	0.888	INTRON zfh1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3514189	2L_3514189_SNP [dm3] 2L_3514189_SNP [dm6]	G	A	2.591e^-4	0.888	SYNONYMOUS_CODING CG33123 UPSTREAM CG17593	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18645495	3L_18645495_SNP [dm3] 3L_18652395_SNP [dm6]	G	T	2.593e^-4	0.888	INTRON MYPT-75D
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	2.598e^-4	0.888	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	5322073	3L_5322073_SNP [dm3] 3L_5328973_SNP [dm6]	C	G	2.615e^-4	0.888	INTERGENIC
2L	9263570	2L_9263570_DEL [dm3] 2L_9263570_DEL [dm6]	CC	C	2.617e^-4	0.888	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13447346	3R_13447346_SNP [dm3] 3R_17621624_SNP [dm6]	T	C	2.618e^-4	0.888	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
2L	12454867	2L_12454867_SNP [dm3] 2L_12454867_SNP [dm6]	A	C	2.623e^-4	0.888	DOWNSTREAM bun EXON CR17024
3L	12613444	3L_12613444_SNP [dm3] 3L_12620344_SNP [dm6]	G	A	2.631e^-4	0.888	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10451227	2L_10451227_SNP [dm3] 2L_10451227_SNP [dm6]	C	A	2.642e^-4	0.888	NON_SYNONYMOUS_CODING ppk10
3R	15785298	3R_15785298_SNP [dm3] 3R_19959576_SNP [dm6]	A	G	2.644e^-4	0.888	INTRON Hs6st
X	19377694	X_19377694_DEL [dm3] X_19483661_DEL [dm6]	GCTCTTTGAA	G	2.653e^-4	0.888	INTRON Nat1
3R	18393503	3R_18393503_SNP [dm3] 3R_22567781_SNP [dm6]	T	A	2.658e^-4	0.888	INTERGENIC
3L	2353214	3L_2353214_SNP [dm3] 3L_2353214_SNP [dm6]	T	A	2.677e^-4	0.888	INTERGENIC
2L	1989007	2L_1989007_SNP [dm3] 2L_1989007_SNP [dm6]	A	C	2.688e^-4	0.888	UPSTREAM CR42874 DOWNSTREAM Npc2a INTERGENIC	TF binding site mE1_TFBS_cad
2R	18154331	2R_18154331_SNP [dm3] 2R_22266826_SNP [dm6]	A	T	2.691e^-4	0.888	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	12392275	3L_12392275_SNP [dm3] 3L_12399175_SNP [dm6]	G	A	2.703e^-4	0.888	SYNONYMOUS_CODING CG32104 DOWNSTREAM Smyd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18717908	X_18717908_DEL [dm3] X_18823875_DEL [dm6]	GGCAACTAAAGATATTTGAT...	G	2.707e^-4	0.888	INTRON CG42450
2L	4098670	2L_4098670_SNP [dm3] 2L_4098670_SNP [dm6]	G	A	2.710e^-4	0.888	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13620004	2L_13620004_DEL [dm3] 2L_13620004_DEL [dm6]	ACCCTTAAACC...	A	2.714e^-4	0.888	INTRON kuz
3R	23435030	3R_23435030_SNP [dm3] 3R_27609308_SNP [dm6]	A	C	2.716e^-4	0.888	INTRON Tusp
3L	17320782	3L_17320782_SNP [dm3] 3L_17327682_SNP [dm6]	C	G	2.728e^-4	0.888	DOWNSTREAM Or74a INTERGENIC
2L	12454739	2L_12454739_SNP [dm3] 2L_12454739_SNP [dm6]	A	C	2.738e^-4	0.888	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
3R	14149429	3R_14149429_SNP [dm3] 3R_18323707_SNP [dm6]	C	T	2.739e^-4	0.888	INTRON CG31235
3L	3866324	3L_3866324_SNP [dm3] 3L_3866324_SNP [dm6]	C	T	2.742e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10503429	X_10503429_SNP [dm3] X_10609396_SNP [dm6]	C	T	2.753e^-4	0.888	INTRON CG43347
2L	2521687	2L_2521687_SNP [dm3] 2L_2521687_SNP [dm6]	C	A	2.755e^-4	0.888	INTERGENIC
2L	6748850	2L_6748850_SNP [dm3] 2L_6748850_SNP [dm6]	C	T	2.762e^-4	0.888	UPSTREAM CG44271 INTRON CG11221
3R	13448188	3R_13448188_SNP [dm3] 3R_17622466_SNP [dm6]	T	A	2.764e^-4	0.888	UPSTREAM tRNA:CR33534 & 1 other INTERGENIC
3L	6011067	3L_6011067_SNP [dm3] 3L_6017967_SNP [dm6]	A	T	2.769e^-4	0.888	INTRON PVRAP
3R	11838107	3R_11838107_SNP [dm3] 3R_16012385_SNP [dm6]	C	G	2.775e^-4	0.888	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	3867832	3L_3867832_SNP [dm3] 3L_3867832_SNP [dm6]	T	A	2.778e^-4	0.888	INTERGENIC
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	2.779e^-4	0.888	INTRON sfl
3R	18393492	3R_18393492_SNP [dm3] 3R_22567770_SNP [dm6]	C	A	2.781e^-4	0.888	INTERGENIC
3L	12411561	3L_12411561_SNP [dm3] 3L_12418461_SNP [dm6]	C	T	2.783e^-4	0.888	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	2714046	3R_2714046_SNP [dm3] 3R_6888324_SNP [dm6]	T	A	2.785e^-4	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	6011069	3L_6011069_SNP [dm3] 3L_6017969_SNP [dm6]	A	G	2.790e^-4	0.888	INTRON PVRAP
3L	12236397	3L_12236397_SNP [dm3] 3L_12243297_SNP [dm6]	C	T	2.796e^-4	0.888	INTRON app
3L	1199014	3L_1199014_SNP [dm3] 3L_1199014_SNP [dm6]	G	T	2.801e^-4	0.888	UTR_3_PRIME Aplip1
3R	26879883	3R_26879883_SNP [dm3] 3R_31054161_SNP [dm6]	G	A	2.809e^-4	0.888	UTR_3_PRIME dco UPSTREAM l_3_03670	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	15540900	3R_15540900_SNP [dm3] 3R_19715178_SNP [dm6]	A	G	2.810e^-4	0.888	DOWNSTREAM CG34286 INTERGENIC
3L	18948242	3L_18948242_SNP [dm3] 3L_18955142_SNP [dm6]	A	G	2.813e^-4	0.888	INTRON CG6836
3R	18792742	3R_18792742_SNP [dm3] 3R_22967020_SNP [dm6]	T	C	2.813e^-4	0.888	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
3R	16213148	3R_16213148_SNP [dm3] 3R_20387426_SNP [dm6]	G	T	2.816e^-4	0.888	SYNONYMOUS_CODING Gfrl
3L	13778673	3L_13778673_SNP [dm3] 3L_13785573_SNP [dm6]	A	T	2.817e^-4	0.888	INTRON bru-3
2R	7547155	2R_7547155_SNP [dm3] 2R_11659650_SNP [dm6]	G	A	2.821e^-4	0.888	DOWNSTREAM tRNA:M2:48Bb INTRON Roc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18511350	2R_18511350_SNP [dm3] 2R_22623845_SNP [dm6]	G	A	2.825e^-4	0.888	INTRON CG33143
X	3545959	X_3545959_SNP [dm3] X_3651926_SNP [dm6]	A	T	2.829e^-4	0.888	INTRON AstA-R1
3L	18947121	3L_18947121_SNP [dm3] 3L_18954021_SNP [dm6]	A	G	2.839e^-4	0.888	INTRON CG6836
3L	13738213	3L_13738213_SNP [dm3] 3L_13745113_SNP [dm6]	C	A	2.847e^-4	0.888	INTRON bru-3
2L	18031236	2L_18031236_SNP [dm3] 2L_18031236_SNP [dm6]	A	C	2.847e^-4	0.888	INTRON rdo
3L	1997165	3L_1997165_SNP [dm3] 3L_1997165_SNP [dm6]	T	C	2.851e^-4	0.888	INTERGENIC
3L	8322062	3L_8322062_SNP [dm3] 3L_8328962_SNP [dm6]	A	G	2.852e^-4	0.888	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_ttk
X	6880579	X_6880579_SNP [dm3] X_6986546_SNP [dm6]	G	T	2.857e^-4	0.888	UTR_5_PRIME bou UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	16728989	2R_16728989_SNP [dm3] 2R_20841484_SNP [dm6]	G	T	2.881e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9038524	2L_9038524_INS [dm3] 2L_9038524_INS [dm6]	G	GG	2.889e^-4	0.888	INTERGENIC
3L	12414528	3L_12414528_SNP [dm3] 3L_12421428_SNP [dm6]	C	A	2.894e^-4	0.888	INTERGENIC
2L	12138301	2L_12138301_SNP [dm3] 2L_12138301_SNP [dm6]	C	G	2.895e^-4	0.888	SYNONYMOUS_CODING Gr33a
3R	16520429	3R_16520429_SNP [dm3] 3R_20694707_SNP [dm6]	A	T	2.898e^-4	0.888	INTRON Oamb
X	18353949	X_18353949_SNP [dm3] X_18459916_SNP [dm6]	C	T	2.905e^-4	0.888	NON_SYNONYMOUS_CODING CG43843 UPSTREAM CR43842 INTRON CG32547
2L	9173121	2L_9173121_SNP [dm3] 2L_9173121_SNP [dm6]	C	G	2.913e^-4	0.888	INTRON tai
2R	10273765	2R_10273765_SNP [dm3] 2R_14386260_SNP [dm6]	A	G	2.915e^-4	0.888	DOWNSTREAM Dh44-R1 INTERGENIC
2L	4151736	2L_4151736_SNP [dm3] 2L_4151736_SNP [dm6]	T	A	2.916e^-4	0.888	DOWNSTREAM CG2955 INTERGENIC
3R	16520490	3R_16520490_SNP [dm3] 3R_20694768_SNP [dm6]	T	A	2.923e^-4	0.888	INTRON Oamb
3L	13728545	3L_13728545_SNP [dm3] 3L_13735445_SNP [dm6]	C	T	2.926e^-4	0.888	INTRON bru-3
X	3548463	X_3548463_SNP [dm3] X_3654430_SNP [dm6]	G	A	2.929e^-4	0.888	INTRON AstA-R1
2L	14305378	2L_14305378_SNP [dm3] 2L_14305378_SNP [dm6]	A	G	2.945e^-4	0.888	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2L	18269237	2L_18269237_SNP [dm3] 2L_18269237_SNP [dm6]	C	T	2.949e^-4	0.888	INTRON CG42750
2L	6698598	2L_6698598_SNP [dm3] 2L_6698598_SNP [dm6]	A	G	2.950e^-4	0.888	INTRON Tsp
3L	598128	3L_598128_SNP [dm3] 3L_598128_SNP [dm6]	C	T	2.957e^-4	0.888	SYNONYMOUS_CODING MED14 DOWNSTREAM CG13893	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	231328	2L_231328_SNP [dm3] 2L_231328_SNP [dm6]	T	A	2.961e^-4	0.888	DOWNSTREAM snoRNA:kis-a INTRON kis
3L	2749204	3L_2749204_SNP [dm3] 3L_2749204_SNP [dm6]	A	G	2.967e^-4	0.888	INTRON Mrtf
3L	16539646	3L_16539646_INS [dm3] 3L_16546546_INS [dm6]	C	CT	2.968e^-4	0.888	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	839898	3R_839898_SNP [dm3] 3R_5014176_SNP [dm6]	T	G	2.975e^-4	0.888	INTERGENIC
3R	26364288	3R_26364288_SNP [dm3] 3R_30538566_SNP [dm6]	T	C	2.983e^-4	0.888	UPSTREAM tmod INTRON tmod
X	5602740	X_5602740_INS [dm3] X_5708707_INS [dm6]	T	TTAC	2.986e^-4	0.888	UTR_3_PRIME CG33080 DOWNSTREAM CG4096
3R	17706278	3R_17706278_SNP [dm3] 3R_21880556_SNP [dm6]	A	C	2.988e^-4	0.888	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG31465 EXON CR45046
2L	1654316	2L_1654316_SNP [dm3] 2L_1654316_SNP [dm6]	A	C	2.999e^-4	0.888	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18237806	X_18237806_DEL [dm3] X_18343773_DEL [dm6]	CTAC	C	3.005e^-4	0.888	INTRON CG6123	TF binding site mE1_TFBS_chinmo
3L	2183022	3L_2183022_SNP [dm3] 3L_2183022_SNP [dm6]	A	G	3.005e^-4	0.888	INTERGENIC
3R	10789849	3R_10789849_SNP [dm3] 3R_14964127_SNP [dm6]	T	A	3.009e^-4	0.888	INTERGENIC
X	7322042	X_7322042_SNP [dm3] X_7428009_SNP [dm6]	C	A	3.010e^-4	0.888	INTERGENIC
2L	7489623	2L_7489623_SNP [dm3] 2L_7489623_SNP [dm6]	T	A	3.016e^-4	0.888	INTRON Ziz
2R	9494890	2R_9494890_SNP [dm3] 2R_13607385_SNP [dm6]	G	A	3.022e^-4	0.888	INTERGENIC
2L	7146066	2L_7146066_SNP [dm3] 2L_7146066_SNP [dm6]	A	T	3.023e^-4	0.888	DOWNSTREAM CR44612 INTRON Pvf3
X	16266035	X_16266035_SNP [dm3] X_16372002_SNP [dm6]	G	A	3.037e^-4	0.888	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13726533	3L_13726533_DEL [dm3] 3L_13733433_DEL [dm6]	GAATACG	G	3.038e^-4	0.888	INTRON bru-3
2L	9041761	2L_9041761_SNP [dm3] 2L_9041761_SNP [dm6]	C	T	3.039e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_sens
X	16097029	X_16097029_SNP [dm3] X_16202996_SNP [dm6]	C	G	3.044e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	4371762	3R_4371762_SNP [dm3] 3R_8546040_SNP [dm6]	G	A	3.044e^-4	0.888	UPSTREAM CR45574 EXON CR45575
3L	1090241	3L_1090241_SNP [dm3] 3L_1090241_SNP [dm6]	A	C	3.046e^-4	0.888	INTRON bab1	regulatory region REDfly_CRMs
2R	15766219	2R_15766219_SNP [dm3] 2R_19878714_SNP [dm6]	T	A	3.049e^-4	0.888	DOWNSTREAM CG13872 INTERGENIC
3L	1199632	3L_1199632_INS [dm3] 3L_1199632_INS [dm6]	T	TACTAATAATACTAAT...	3.050e^-4	0.888	DOWNSTREAM Aplip1 INTERGENIC
X	12088850	X_12088850_SNP [dm3] X_12194817_SNP [dm6]	C	A	3.051e^-4	0.888	INTRON Ten-a
2L	16709913	2L_16709913_SNP [dm3] 2L_16709913_SNP [dm6]	T	C	3.055e^-4	0.888	INTRON CG31808
3R	4206446	3R_4206446_SNP [dm3] 3R_8380724_SNP [dm6]	C	T	3.057e^-4	0.888	INTRON CG45263
2R	13628060	2R_13628060_SNP [dm3] 2R_17740555_SNP [dm6]	T	C	3.064e^-4	0.888	SYNONYMOUS_CODING CG4996 UPSTREAM CG6401	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	2830114	X_2830114_SNP [dm3] X_2936081_SNP [dm6]	G	C	3.065e^-4	0.888	UPSTREAM CG3598 DOWNSTREAM CG3592 INTRON kirre
X	8203814	X_8203814_SNP [dm3] X_8309781_SNP [dm6]	G	A	3.081e^-4	0.888	INTRON nAChRalpha3
X	13968089	X_13968089_SNP [dm3] X_14074056_SNP [dm6]	C	T	3.087e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14265513	2R_14265513_SNP [dm3] 2R_18378008_SNP [dm6]	C	T	3.090e^-4	0.888	INTRON CR42736	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8629791	3L_8629791_SNP [dm3] 3L_8636691_SNP [dm6]	T	C	3.090e^-4	0.888	UTR_3_PRIME Zasp66 INTRON Zasp66
2L	11843485	2L_11843485_SNP [dm3] 2L_11843485_SNP [dm6]	C	A	3.096e^-4	0.888	START_GAINED CG42486 UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
2R	16699373	2R_16699373_SNP [dm3] 2R_20811868_SNP [dm6]	G	T	3.109e^-4	0.888	INTERGENIC
3L	3867824	3L_3867824_SNP [dm3] 3L_3867824_SNP [dm6]	T	A	3.109e^-4	0.888	INTERGENIC
3R	21750523	3R_21750523_SNP [dm3] 3R_25924801_SNP [dm6]	T	G	3.115e^-4	0.888	SYNONYMOUS_CODING CCAP-R
X	9082358	X_9082358_DEL [dm3] X_9188325_DEL [dm6]	AA	A	3.115e^-4	0.888	UTR_3_PRIME mei-P26 DOWNSTREAM CG12115
3L	13732387	3L_13732387_SNP [dm3] 3L_13739287_SNP [dm6]	C	A	3.117e^-4	0.888	INTRON bru-3
3L	6836031	3L_6836031_SNP [dm3] 3L_6842931_SNP [dm6]	C	T	3.144e^-4	0.888	INTERGENIC
3L	13087533	3L_13087533_SNP [dm3] 3L_13094433_SNP [dm6]	C	T	3.156e^-4	0.888	INTERGENIC
3R	13447403	3R_13447403_SNP [dm3] 3R_17621681_SNP [dm6]	G	A	3.162e^-4	0.888	SYNONYMOUS_CODING CG14323 UPSTREAM tRNA:CR33534
3L	3142165	3L_3142165_SNP [dm3] 3L_3142165_SNP [dm6]	G	A	3.163e^-4	0.888	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	25220787	3R_25220787_SNP [dm3] 3R_29395065_SNP [dm6]	C	G	3.165e^-4	0.888	INTRON Ptp99A
3L	21842999	3L_21842999_SNP [dm3] 3L_21849899_SNP [dm6]	C	A	3.182e^-4	0.888	INTRON mub
2L	5140937	2L_5140937_SNP [dm3] 2L_5140937_SNP [dm6]	A	T	3.186e^-4	0.888	INTRON Msp300	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1335813	3L_1335813_SNP [dm3] 3L_1335813_SNP [dm6]	G	A	3.193e^-4	0.888	UPSTREAM CG2211 INTRON l_3_02640	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6012754	3L_6012754_SNP [dm3] 3L_6019654_SNP [dm6]	C	T	3.201e^-4	0.888	SYNONYMOUS_CODING PVRAP
X	2690651	X_2690651_SNP [dm3] X_2796618_SNP [dm6]	T	A	3.221e^-4	0.888	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	7043279	2R_7043279_SNP [dm3] 2R_11155774_SNP [dm6]	T	C	3.228e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
2R	7424494	2R_7424494_SNP [dm3] 2R_11536989_SNP [dm6]	A	C	3.232e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17049631	2L_17049631_SNP [dm3] 2L_17049631_SNP [dm6]	G	A	3.233e^-4	0.888	INTERGENIC
2R	18233644	2R_18233644_SNP [dm3] 2R_22346139_SNP [dm6]	C	T	3.235e^-4	0.888	NON_SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
2R	19905569	2R_19905569_SNP [dm3] 2R_24018046_SNP [dm6]	G	A	3.238e^-4	0.888	NON_SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	18250131	3R_18250131_SNP [dm3] 3R_22424409_SNP [dm6]	G	A	3.250e^-4	0.888	SYNONYMOUS_CODING pinta DOWNSTREAM CG13847
2R	17694333	2R_17694333_SNP [dm3] 2R_21806828_SNP [dm6]	T	C	3.253e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_kn
3L	10230591	3L_10230591_SNP [dm3] 3L_10237491_SNP [dm6]	G	A	3.255e^-4	0.888	DOWNSTREAM CR44542 INTERGENIC
3R	16482830	3R_16482830_SNP [dm3] 3R_20657108_SNP [dm6]	A	T	3.256e^-4	0.888	UPSTREAM Nep4 INTRON Nep4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
3R	16482838	3R_16482838_SNP [dm3] 3R_20657116_SNP [dm6]	A	C	3.256e^-4	0.888	UPSTREAM Nep4 INTRON Nep4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sbb
X	3557225	X_3557225_INS [dm3] X_3663192_INS [dm6]	C	CGTCACTATATAC...	3.271e^-4	0.888	INTRON AstA-R1
2L	18263144	2L_18263144_SNP [dm3] 2L_18263144_SNP [dm6]	C	A	3.281e^-4	0.888	UPSTREAM CR44901 INTRON CG42750
X	20555597	X_20555597_SNP [dm3] X_20684570_SNP [dm6]	C	T	3.283e^-4	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3L	18819482	3L_18819482_SNP [dm3] 3L_18826382_SNP [dm6]	A	T	3.283e^-4	0.888	SYNONYMOUS_CODING Cat
3L	8630091	3L_8630091_SNP [dm3] 3L_8636991_SNP [dm6]	T	C	3.288e^-4	0.888	DOWNSTREAM Zasp66 INTRON Zasp66
X	20245482	X_20245482_SNP [dm3] X_20374455_SNP [dm6]	C	A	3.298e^-4	0.888	INTERGENIC
2L	2602377	2L_2602377_SNP [dm3] 2L_2602377_SNP [dm6]	C	T	3.300e^-4	0.888	UPSTREAM CR44789 INTERGENIC
3R	26140634	3R_26140634_SNP [dm3] 3R_30314912_SNP [dm6]	T	A	3.302e^-4	0.888	INTRON hdc
3R	25491175	3R_25491175_SNP [dm3] 3R_29665453_SNP [dm6]	G	A	3.303e^-4	0.888	SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
3R	20196586	3R_20196586_SNP [dm3] 3R_24370864_SNP [dm6]	A	T	3.303e^-4	0.888	NON_SYNONYMOUS_CODING CG17782 DOWNSTREAM CG13614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1622341	2R_1622341_SNP [dm3] 2R_5734836_SNP [dm6]	C	T	3.304e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2L	16987311	2L_16987311_SNP [dm3] 2L_16987311_SNP [dm6]	A	C	3.305e^-4	0.888	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
2L	4531756	2L_4531756_SNP [dm3] 2L_4531756_SNP [dm6]	G	A	3.316e^-4	0.888	SYNONYMOUS_CODING dp INTRON dp
3L	12151504	3L_12151504_SNP [dm3] 3L_12158404_SNP [dm6]	G	T	3.320e^-4	0.888	INTRON CG9760	TF binding site mE1_TFBS_cad
2L	1499931	2L_1499931_SNP [dm3] 2L_1499931_SNP [dm6]	T	C	3.324e^-4	0.888	NON_SYNONYMOUS_CODING CG18131 UPSTREAM CR44064 DOWNSTREAM CG7420
3R	17803302	3R_17803302_SNP [dm3] 3R_21977580_SNP [dm6]	T	G	3.327e^-4	0.888	INTRON Eip93F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3845157	3L_3845157_SNP [dm3] 3L_3845157_SNP [dm6]	A	T	3.330e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19876354	3R_19876354_SNP [dm3] 3R_24050632_SNP [dm6]	A	G	3.348e^-4	0.888	SYNONYMOUS_CODING Atg6 UPSTREAM CG5991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20016930	3R_20016930_SNP [dm3] 3R_24191208_SNP [dm6]	T	A	3.349e^-4	0.888	SYNONYMOUS_CODING jnj
3R	10763108	3R_10763108_DEL [dm3] 3R_14937386_DEL [dm6]	CC	C	3.354e^-4	0.888	INTERGENIC
3R	7406942	3R_7406942_SNP [dm3] 3R_11581220_SNP [dm6]	G	C	3.355e^-4	0.888	NON_SYNONYMOUS_CODING CG5342 UPSTREAM wkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18044757	2L_18044757_DEL [dm3] 2L_18044757_DEL [dm6]	GGCCCTG	G	3.357e^-4	0.888	INTRON rdo
X	9107759	X_9107759_DEL [dm3] X_9213726_DEL [dm6]	AGATTACAGTTTA...	A	3.361e^-4	0.888	INTERGENIC
X	3548281	X_3548281_SNP [dm3] X_3654248_SNP [dm6]	C	T	3.362e^-4	0.888	INTRON AstA-R1
3R	16477067	3R_16477067_SNP [dm3] 3R_20651345_SNP [dm6]	A	G	3.364e^-4	0.888	SYNONYMOUS_CODING GluRIID
3L	13734310	3L_13734310_SNP [dm3] 3L_13741210_SNP [dm6]	C	A	3.370e^-4	0.888	INTRON bru-3
X	7532629	X_7532629_SNP [dm3] X_7638596_SNP [dm6]	C	G	3.374e^-4	0.888	INTRON ct
2L	20669704	2L_20669704_SNP [dm3] 2L_20669704_SNP [dm6]	T	C	3.376e^-4	0.888	INTRON CG31678	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5662346	3L_5662346_SNP [dm3] 3L_5669246_SNP [dm6]	A	T	3.378e^-4	0.888	INTRON sif
3R	19874228	3R_19874228_SNP [dm3] 3R_24048506_SNP [dm6]	C	T	3.379e^-4	0.888	SYNONYMOUS_CODING CG5986 UPSTREAM Rox8 DOWNSTREAM Atg6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13558077	3R_13558077_SNP [dm3] 3R_17732355_SNP [dm6]	T	C	3.379e^-4	0.888	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22082470	3R_22082470_SNP [dm3] 3R_26256748_SNP [dm6]	T	G	3.380e^-4	0.888	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18793607	3R_18793607_DEL [dm3] 3R_22967885_DEL [dm6]	ATTCGGCGGTAATTAGA...	A	3.384e^-4	0.888	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5996964	X_5996964_SNP [dm3] X_6102931_SNP [dm6]	C	A	3.384e^-4	0.888	INTRON Nep1	TF binding site mE1_TFBS_chinmo
X	2690567	X_2690567_SNP [dm3] X_2796534_SNP [dm6]	T	C	3.392e^-4	0.888	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5859834	X_5859834_DEL [dm3] X_5965801_DEL [dm6]	AAA	A	3.397e^-4	0.888	UPSTREAM Grip INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16559137	X_16559137_DEL [dm3] X_16665104_DEL [dm6]	ATAT	G	3.398e^-4	0.888	UPSTREAM CG15865 INTRON r
3L	8018049	3L_8018049_SNP [dm3] 3L_8024949_SNP [dm6]	C	T	3.410e^-4	0.888	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2R	14045680	2R_14045680_DEL [dm3] 2R_18158175_DEL [dm6]	TT	T	3.414e^-4	0.888	UTR_5_PRIME lolal UPSTREAM CG10914 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	3.437e^-4	0.888	INTRON jnj
X	3473475	X_3473475_SNP [dm3] X_3579442_SNP [dm6]	A	C	3.446e^-4	0.888	INTRON AstA-R1
3L	21460341	3L_21460341_SNP [dm3] 3L_21467241_SNP [dm6]	C	T	3.451e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16883492	3R_16883492_SNP [dm3] 3R_21057770_SNP [dm6]	T	G	3.460e^-4	0.888	INTRON Mvl	TF binding site mE1_TFBS_sens
X	9082356	X_9082356_SNP [dm3] X_9188323_SNP [dm6]	A	G	3.460e^-4	0.888	UTR_3_PRIME mei-P26
3R	14861900	3R_14861900_SNP [dm3] 3R_19036178_SNP [dm6]	C	T	3.462e^-4	0.888	INTRON CG6026	TF binding site mE1_TFBS_inv
3L	17352334	3L_17352334_SNP [dm3] 3L_17359234_SNP [dm6]	A	T	3.464e^-4	0.888	UPSTREAM tap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	15664606	3L_15664606_SNP [dm3] 3L_15671506_SNP [dm6]	T	G	3.466e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	3098453	3L_3098453_SNP [dm3] 3L_3098453_SNP [dm6]	A	C	3.468e^-4	0.888	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2L	17633821	2L_17633821_INS [dm3] 2L_17633821_INS [dm6]	C	AA	3.468e^-4	0.888	INTERGENIC
3R	16506038	3R_16506038_MNP [dm3] 3R_20680316_MNP [dm6]	GACAG	TTTTT	3.470e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2748635	2L_2748635_SNP [dm3] 2L_2748635_SNP [dm6]	A	C	3.474e^-4	0.888	START_GAINED Pgk UTR_5_PRIME Pgk UPSTREAM Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7510472	2L_7510472_SNP [dm3] 2L_7510472_SNP [dm6]	T	C	3.477e^-4	0.888	INTRON RapGAP1
2R	11769465	2R_11769465_SNP [dm3] 2R_15881960_SNP [dm6]	C	T	3.481e^-4	0.888	INTRON sli
2L	7489627	2L_7489627_SNP [dm3] 2L_7489627_SNP [dm6]	A	C	3.494e^-4	0.888	INTRON Ziz
3R	16599719	3R_16599719_SNP [dm3] 3R_20773997_SNP [dm6]	G	T	3.495e^-4	0.888	INTRON Syp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23570593	3R_23570593_SNP [dm3] 3R_27744871_SNP [dm6]	T	C	3.498e^-4	0.888	INTRON Ets98B
3R	18615620	3R_18615620_SNP [dm3] 3R_22789898_SNP [dm6]	C	T	3.521e^-4	0.888	SYNONYMOUS_CODING CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20453318	X_20453318_SNP [dm3] X_20582291_SNP [dm6]	G	A	3.523e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10707778	3L_10707778_SNP [dm3] 3L_10714678_SNP [dm6]	A	G	3.525e^-4	0.888	INTERGENIC
3R	7399245	3R_7399245_SNP [dm3] 3R_11573523_SNP [dm6]	C	G	3.530e^-4	0.888	NON_SYNONYMOUS_CODING Mrp4	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7505893	2L_7505893_SNP [dm3] 2L_7505893_SNP [dm6]	C	G	3.531e^-4	0.888	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Kr
2L	22021375	2L_22021375_SNP [dm3] 2L_22021375_SNP [dm6]	A	G	3.536e^-4	0.888	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18067050	2R_18067050_SNP [dm3] 2R_22179545_SNP [dm6]	G	T	3.541e^-4	0.888	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21215282	X_21215282_SNP [dm3] X_21344255_SNP [dm6]	G	A	3.546e^-4	0.888	UTR_3_PRIME fliI	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11397550	2L_11397550_SNP [dm3] 2L_11397550_SNP [dm6]	C	T	3.553e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs
3L	505585	3L_505585_SNP [dm3] 3L_505585_SNP [dm6]	C	A	3.553e^-4	0.888	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13726526	3L_13726526_SNP [dm3] 3L_13733426_SNP [dm6]	C	T	3.565e^-4	0.888	INTRON bru-3
2L	7146062	2L_7146062_SNP [dm3] 2L_7146062_SNP [dm6]	A	G	3.569e^-4	0.888	DOWNSTREAM CR44612 INTRON Pvf3
2R	12778943	2R_12778943_INS [dm3] 2R_16891438_INS [dm6]	C	CA	3.580e^-4	0.888	INTRON CG8910	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12105736	2L_12105736_SNP [dm3] 2L_12105736_SNP [dm6]	T	C	3.590e^-4	0.888	SYNONYMOUS_CODING Aats-thr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2185731	2L_2185731_SNP [dm3] 2L_2185731_SNP [dm6]	G	C	3.597e^-4	0.888	DOWNSTREAM CR43751 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo
2L	4918214	2L_4918214_SNP [dm3] 2L_4918214_SNP [dm6]	A	T	3.604e^-4	0.888	INTRON hoe1
X	15666450	X_15666450_SNP [dm3] X_15772417_SNP [dm6]	T	G	3.605e^-4	0.888	NON_SYNONYMOUS_CODING CG33172 UPSTREAM CG43672
2L	14712751	2L_14712751_SNP [dm3] 2L_14712751_SNP [dm6]	T	G	3.608e^-4	0.888	NON_SYNONYMOUS_CODING CG15282 SPLICE_SITE_REGION CG15282 UPSTREAM CG34165
2R	17479962	2R_17479962_SNP [dm3] 2R_21592457_SNP [dm6]	C	T	3.612e^-4	0.888	DOWNSTREAM CG33225 INTERGENIC
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	3.614e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_sens
2R	14147972	2R_14147972_DEL [dm3] 2R_18260467_DEL [dm6]	GA	G	3.616e^-4	0.888	INTERGENIC
2R	9078171	2R_9078171_DEL [dm3] 2R_13190666_DEL [dm6]	ACAGA	A	3.616e^-4	0.888	UPSTREAM seq & 2 others INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1654265	2L_1654265_SNP [dm3] 2L_1654265_SNP [dm6]	T	C	3.623e^-4	0.888	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4581448	2R_4581448_SNP [dm3] 2R_8693943_SNP [dm6]	G	T	3.626e^-4	0.888	SYNONYMOUS_CODING CG8586	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3845093	3L_3845093_SNP [dm3] 3L_3845093_SNP [dm6]	G	A	3.633e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	16266038	X_16266038_SNP [dm3] X_16372005_SNP [dm6]	T	A	3.634e^-4	0.888	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1285295	2L_1285295_SNP [dm3] 2L_1285295_SNP [dm6]	C	T	3.642e^-4	0.888	INTRON robo3
2R	8925321	2R_8925321_SNP [dm3] 2R_13037816_SNP [dm6]	C	G	3.646e^-4	0.888	INTERGENIC
3R	842800	3R_842800_SNP [dm3] 3R_5017078_SNP [dm6]	C	G	3.649e^-4	0.888	INTRON CR45585	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4204433	X_4204433_SNP [dm3] X_4310400_SNP [dm6]	C	A	3.656e^-4	0.888	DOWNSTREAM CG15579 INTERGENIC
3R	24452735	3R_24452735_SNP [dm3] 3R_28627013_SNP [dm6]	T	C	3.673e^-4	0.888	INTRON CG10011
3R	22061201	3R_22061201_INS [dm3] 3R_26235479_INS [dm6]	C	CCAGGC	3.674e^-4	0.888	DOWNSTREAM CG12290 EXON CR42745
3R	11693564	3R_11693564_SNP [dm3] 3R_15867842_SNP [dm6]	A	G	3.675e^-4	0.888	INTRON CG31183
2L	16987316	2L_16987316_SNP [dm3] 2L_16987316_SNP [dm6]	G	C	3.676e^-4	0.888	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
3L	3846377	3L_3846377_SNP [dm3] 3L_3846377_SNP [dm6]	A	T	3.677e^-4	0.888	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	7451068	2L_7451068_DEL [dm3] 2L_7451068_DEL [dm6]	GTGGA	G	3.686e^-4	0.888	UTR_5_PRIME santa-maria
2L	6102446	2L_6102446_SNP [dm3] 2L_6102446_SNP [dm6]	T	A	3.688e^-4	0.888	INTRON stai
3L	12414509	3L_12414509_SNP [dm3] 3L_12421409_SNP [dm6]	T	A	3.688e^-4	0.888	INTERGENIC
2R	13526831	2R_13526831_DEL [dm3] 2R_17639326_DEL [dm6]	TACT	T	3.689e^-4	0.888	UPSTREAM CG10936 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	18719096	X_18719096_SNP [dm3] X_18825063_SNP [dm6]	G	A	3.689e^-4	0.888	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13437047	3R_13437047_SNP [dm3] 3R_17611325_SNP [dm6]	G	A	3.689e^-4	0.888	SYNONYMOUS_CODING Edg91 DOWNSTREAM CG14329
2R	20384295	2R_20384295_SNP [dm3] 2R_24496772_SNP [dm6]	A	G	3.691e^-4	0.888	SYNONYMOUS_CODING Crtp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	842995	2L_842995_SNP [dm3] 2L_842995_SNP [dm6]	G	A	3.701e^-4	0.888	UPSTREAM drongo INTRON drongo
2L	5820954	2L_5820954_SNP [dm3] 2L_5820954_SNP [dm6]	A	G	3.714e^-4	0.888	INTERGENIC
2L	174200	2L_174200_SNP [dm3] 2L_174200_SNP [dm6]	G	A	3.717e^-4	0.888	INTRON spen
2L	11644789	2L_11644789_SNP [dm3] 2L_11644789_SNP [dm6]	A	G	3.718e^-4	0.888	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
2R	18230934	2R_18230934_SNP [dm3] 2R_22343429_SNP [dm6]	C	T	3.735e^-4	0.888	INTRON Liprin-gamma
3L	1282724	3L_1282724_SNP [dm3] 3L_1282724_SNP [dm6]	A	G	3.737e^-4	0.888	INTRON CG32333
3L	21699598	3L_21699598_SNP [dm3] 3L_21706498_SNP [dm6]	G	A	3.737e^-4	0.888	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	22021358	2L_22021358_SNP [dm3] 2L_22021358_SNP [dm6]	C	T	3.738e^-4	0.888	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14049379	2R_14049379_SNP [dm3] 2R_18161874_SNP [dm6]	G	A	3.740e^-4	0.888	SPLICE_SITE_REGION CG10915 SYNONYMOUS_CODING CG10915
X	12935045	X_12935045_SNP [dm3] X_13041012_SNP [dm6]	C	T	3.742e^-4	0.888	INTRON rad
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	3.745e^-4	0.888	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14861894	3R_14861894_SNP [dm3] 3R_19036172_SNP [dm6]	G	T	3.747e^-4	0.888	INTRON CG6026	TF binding site mE1_TFBS_inv
3L	2750037	3L_2750037_SNP [dm3] 3L_2750037_SNP [dm6]	A	T	3.751e^-4	0.888	INTRON Mrtf
2L	7284677	2L_7284677_SNP [dm3] 2L_7284677_SNP [dm6]	G	T	3.754e^-4	0.888	INTERGENIC
2R	14147985	2R_14147985_SNP [dm3] 2R_18260480_SNP [dm6]	C	T	3.756e^-4	0.888	INTERGENIC
2L	14305464	2L_14305464_SNP [dm3] 2L_14305464_SNP [dm6]	T	C	3.763e^-4	0.888	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15933734	2R_15933734_SNP [dm3] 2R_20046229_SNP [dm6]	A	T	3.772e^-4	0.888	INTERGENIC
2R	14489585	2R_14489585_SNP [dm3] 2R_18602080_SNP [dm6]	G	T	3.793e^-4	0.888	INTRON GEFmeso
2L	18040158	2L_18040158_INS [dm3] 2L_18040158_INS [dm6]	C	CC	3.797e^-4	0.888	INTRON rdo
X	17813650	X_17813650_SNP [dm3] X_17919617_SNP [dm6]	G	C	3.800e^-4	0.888	INTRON CG6847
2L	4139408	2L_4139408_SNP [dm3] 2L_4139408_SNP [dm6]	T	A	3.804e^-4	0.888	INTERGENIC
3L	12538659	3L_12538659_SNP [dm3] 3L_12545559_SNP [dm6]	A	G	3.806e^-4	0.888	INTRON sowah
3L	7098060	3L_7098060_SNP [dm3] 3L_7104960_SNP [dm6]	T	A	3.809e^-4	0.888	INTRON form3
2R	20435834	2R_20435834_SNP [dm3] 2R_24548311_SNP [dm6]	C	A	3.811e^-4	0.888	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18263336	3R_18263336_SNP [dm3] 3R_22437614_SNP [dm6]	C	G	3.812e^-4	0.888	INTERGENIC
3R	16715186	3R_16715186_SNP [dm3] 3R_20889464_SNP [dm6]	A	G	3.825e^-4	0.888	INTERGENIC
3L	3845170	3L_3845170_SNP [dm3] 3L_3845170_SNP [dm6]	C	G	3.828e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22297516	3R_22297516_SNP [dm3] 3R_26471794_SNP [dm6]	T	A	3.829e^-4	0.888	UTR_3_PRIME plum
2L	9280176	2L_9280176_SNP [dm3] 2L_9280176_SNP [dm6]	T	G	3.831e^-4	0.888	INTRON Ggamma30A
2L	8149202	2L_8149202_SNP [dm3] 2L_8149202_SNP [dm6]	G	T	3.859e^-4	0.888	UTR_5_PRIME CG43394 DOWNSTREAM CG31606 INTRON CG8552 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3938070	3L_3938070_SNP [dm3] 3L_3938070_SNP [dm6]	A	G	3.861e^-4	0.888	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3862433	2L_3862433_SNP [dm3] 2L_3862433_SNP [dm6]	A	T	3.863e^-4	0.888	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	897020	3L_897020_SNP [dm3] 3L_897020_SNP [dm6]	A	T	3.864e^-4	0.888	UPSTREAM CG34057 INTRON CG34056
2R	2787851	2R_2787851_SNP [dm3] 2R_6900346_SNP [dm6]	G	C	3.879e^-4	0.888	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11850307	2R_11850307_SNP [dm3] 2R_15962802_SNP [dm6]	C	T	3.884e^-4	0.888	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad
2R	12874782	2R_12874782_SNP [dm3] 2R_16987277_SNP [dm6]	A	C	3.889e^-4	0.888	INTRON Cbp53E
3R	11838618	3R_11838618_SNP [dm3] 3R_16012896_SNP [dm6]	C	G	3.890e^-4	0.888	INTRON GATAe	TF binding site BDTNP1_TFBS_da
3L	4630684	3L_4630684_DEL [dm3] 3L_4630684_DEL [dm6]	AA	A	3.894e^-4	0.888	INTRON axo
3L	13395357	3L_13395357_SNP [dm3] 3L_13402257_SNP [dm6]	G	T	3.898e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3L	1874367	3L_1874367_SNP [dm3] 3L_1874367_SNP [dm6]	G	A	3.902e^-4	0.888	SYNONYMOUS_CODING dre4	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10621109	3L_10621109_SNP [dm3] 3L_10628009_SNP [dm6]	T	A	3.903e^-4	0.888	DOWNSTREAM CG34238 INTRON CG14151	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21597114	3L_21597114_SNP [dm3] 3L_21604014_SNP [dm6]	T	G	3.904e^-4	0.888	INTRON TfAP-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3835449	3L_3835449_SNP [dm3] 3L_3835449_SNP [dm6]	C	A	3.909e^-4	0.888	INTRON enc
3L	10652522	3L_10652522_SNP [dm3] 3L_10659422_SNP [dm6]	C	T	3.911e^-4	0.888	SYNONYMOUS_CODING CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	14696710	X_14696710_SNP [dm3] X_14802677_SNP [dm6]	G	A	3.925e^-4	0.888	INTRON rut
3L	17024918	3L_17024918_SNP [dm3] 3L_17031818_SNP [dm6]	A	T	3.938e^-4	0.888	DOWNSTREAM CR45756 INTRON Ilp8	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19874183	3R_19874183_SNP [dm3] 3R_24048461_SNP [dm6]	T	A	3.949e^-4	0.888	UPSTREAM Rox8 DOWNSTREAM Atg6 INTRON CG5986	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7905393	2L_7905393_SNP [dm3] 2L_7905393_SNP [dm6]	C	A	3.952e^-4	0.888	INTRON Snoo	TF binding site mE1_TFBS_chinmo
2L	3579451	2L_3579451_SNP [dm3] 2L_3579451_SNP [dm6]	G	A	3.954e^-4	0.888	SYNONYMOUS_CODING sob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17697982	2L_17697982_SNP [dm3] 2L_17697982_SNP [dm6]	G	T	3.965e^-4	0.888	INTRON CadN
3R	10786893	3R_10786893_SNP [dm3] 3R_14961171_SNP [dm6]	A	C	3.968e^-4	0.888	INTERGENIC
3R	15831510	3R_15831510_SNP [dm3] 3R_20005788_SNP [dm6]	T	A	3.968e^-4	0.888	INTRON Hs6st	TF binding site mE1_TFBS_cad
2L	11843480	2L_11843480_SNP [dm3] 2L_11843480_SNP [dm6]	C	A	3.969e^-4	0.888	UTR_5_PRIME CG42486 UTR_3_PRIME CG14933 UPSTREAM CG42486 INTRON Pde1c
3R	806915	3R_806915_SNP [dm3] 3R_4981193_SNP [dm6]	G	A	3.981e^-4	0.888	DOWNSTREAM CG14662 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14149351	3R_14149351_SNP [dm3] 3R_18323629_SNP [dm6]	T	C	3.984e^-4	0.888	INTRON CG31235
3L	824687	3L_824687_SNP [dm3] 3L_824687_SNP [dm6]	G	T	3.984e^-4	0.888	INTERGENIC
3L	824690	3L_824690_SNP [dm3] 3L_824690_SNP [dm6]	T	A	3.984e^-4	0.888	INTERGENIC
2L	9172842	2L_9172842_SNP [dm3] 2L_9172842_SNP [dm6]	A	G	3.988e^-4	0.888	INTRON tai
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	3.989e^-4	0.888	UPSTREAM CG43244 INTERGENIC
2R	16482917	2R_16482917_SNP [dm3] 2R_20595412_SNP [dm6]	T	A	3.994e^-4	0.888	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13858550	3L_13858550_SNP [dm3] 3L_13865450_SNP [dm6]	G	A	3.998e^-4	0.888	INTRON CG8745	TF binding site mE1_TFBS_inv
3L	7906818	3L_7906818_SNP [dm3] 3L_7913718_SNP [dm6]	T	A	4.013e^-4	0.888	UTR_3_PRIME CG8281 & 1 other	TF binding site mE1_TFBS_chinmo
2L	17633832	2L_17633832_SNP [dm3] 2L_17633832_SNP [dm6]	C	T	4.019e^-4	0.888	INTERGENIC
3R	22024816	3R_22024816_SNP [dm3] 3R_26199094_SNP [dm6]	A	G	4.023e^-4	0.888	INTRON CR44320
3R	18390916	3R_18390916_SNP [dm3] 3R_22565194_SNP [dm6]	A	T	4.037e^-4	0.888	INTERGENIC
2R	10594999	2R_10594999_SNP [dm3] 2R_14707494_SNP [dm6]	C	T	4.055e^-4	0.888	INTRON mspo
3R	2714104	3R_2714104_SNP [dm3] 3R_6888382_SNP [dm6]	T	C	4.062e^-4	0.888	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7443959	3L_7443959_SNP [dm3] 3L_7450859_SNP [dm6]	A	T	4.065e^-4	0.888	UTR_5_PRIME CG33278 INTRON CG42458	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14378634	3L_14378634_SNP [dm3] 3L_14385534_SNP [dm6]	A	G	4.086e^-4	0.888	INTERGENIC
2R	14078420	2R_14078420_SNP [dm3] 2R_18190915_SNP [dm6]	T	C	4.095e^-4	0.888	INTRON CG33958
2L	7255047	2L_7255047_SNP [dm3] 2L_7255047_SNP [dm6]	C	T	4.096e^-4	0.888	DOWNSTREAM Wnt4 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16715553	3R_16715553_SNP [dm3] 3R_20889831_SNP [dm6]	A	T	4.097e^-4	0.888	UPSTREAM tRNA:CR31480 INTERGENIC
3L	1136713	3L_1136713_SNP [dm3] 3L_1136713_SNP [dm6]	A	G	4.097e^-4	0.888	INTERGENIC
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	4.113e^-4	0.888	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14418568	2L_14418568_SNP [dm3] 2L_14418568_SNP [dm6]	A	C	4.116e^-4	0.888	INTERGENIC
2L	6888935	2L_6888935_SNP [dm3] 2L_6888935_SNP [dm6]	G	A	4.122e^-4	0.888	INTRON Nlg2
3L	6542208	3L_6542208_SNP [dm3] 3L_6549108_SNP [dm6]	T	A	4.122e^-4	0.888	UTR_3_PRIME sfl
X	18619696	X_18619696_SNP [dm3] X_18725663_SNP [dm6]	A	G	4.128e^-4	0.888	UTR_5_PRIME CG42302 INTRON CCKLR-17D1	TF binding site mE1_TFBS_inv
2L	7550633	2L_7550633_SNP [dm3] 2L_7550633_SNP [dm6]	A	G	4.131e^-4	0.888	INTRON RapGAP1
2L	7548086	2L_7548086_SNP [dm3] 2L_7548086_SNP [dm6]	A	G	4.133e^-4	0.888	INTRON RapGAP1
2L	9569447	2L_9569447_SNP [dm3] 2L_9569447_SNP [dm6]	G	T	4.136e^-4	0.888	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	3842053	3L_3842053_SNP [dm3] 3L_3842053_SNP [dm6]	G	A	4.142e^-4	0.888	UTR_3_PRIME enc DOWNSTREAM enc
2R	7918080	2R_7918080_SNP [dm3] 2R_12030575_SNP [dm6]	C	A	4.148e^-4	0.888	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA
3L	3357823	3L_3357823_SNP [dm3] 3L_3357823_SNP [dm6]	G	A	4.180e^-4	0.888	SYNONYMOUS_CODING kst	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	10267998	2R_10267998_SNP [dm3] 2R_14380493_SNP [dm6]	G	T	4.189e^-4	0.888	INTRON Dh44-R1
3R	26877978	3R_26877978_SNP [dm3] 3R_31052256_SNP [dm6]	C	T	4.195e^-4	0.888	SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670
3R	23382864	3R_23382864_DEL [dm3] 3R_27557142_DEL [dm6]	AGA	A	4.195e^-4	0.888	INTRON Klp98A	TF binding site BDTNP1_TFBS_z
X	13870367	X_13870367_SNP [dm3] X_13976334_SNP [dm6]	T	C	4.198e^-4	0.888	INTRON mamo
X	16955500	X_16955500_SNP [dm3] X_17061467_SNP [dm6]	G	A	4.199e^-4	0.888	INTRON CG45002
X	16955629	X_16955629_SNP [dm3] X_17061596_SNP [dm6]	A	T	4.199e^-4	0.888	INTRON CG45002
2L	7387527	2L_7387527_SNP [dm3] 2L_7387527_SNP [dm6]	A	C	4.202e^-4	0.888	UPSTREAM gudu INTRON CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17027162	2L_17027162_SNP [dm3] 2L_17027162_SNP [dm6]	C	A	4.211e^-4	0.888	INTERGENIC
2R	17479959	2R_17479959_SNP [dm3] 2R_21592454_SNP [dm6]	T	C	4.213e^-4	0.888	DOWNSTREAM CG33225 INTERGENIC
2R	572472	2R_572472_SNP [dm3] 2R_4684967_SNP [dm6]	A	T	4.214e^-4	0.888	INTERGENIC
3R	25340970	3R_25340970_SNP [dm3] 3R_29515248_SNP [dm6]	T	C	4.217e^-4	0.888	UPSTREAM CG2014 INTERGENIC
2L	2834588	2L_2834588_SNP [dm3] 2L_2834588_SNP [dm6]	A	G	4.217e^-4	0.888	DOWNSTREAM CG3119 INTERGENIC
3L	21699625	3L_21699625_SNP [dm3] 3L_21706525_SNP [dm6]	G	T	4.220e^-4	0.888	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	12411738	3L_12411738_SNP [dm3] 3L_12418638_SNP [dm6]	C	T	4.226e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	572473	2R_572473_DEL [dm3] 2R_4684968_DEL [dm6]	AACCT	A	4.230e^-4	0.888	INTERGENIC
2R	572479	2R_572479_SNP [dm3] 2R_4684974_SNP [dm6]	T	A	4.230e^-4	0.888	INTERGENIC
2L	21061321	2L_21061321_SNP [dm3] 2L_21061321_SNP [dm6]	T	G	4.241e^-4	0.888	INTRON CG9265
2R	13209729	2R_13209729_SNP [dm3] 2R_17322224_SNP [dm6]	C	T	4.248e^-4	0.888	INTRON mbl
2L	2521261	2L_2521261_SNP [dm3] 2L_2521261_SNP [dm6]	T	C	4.254e^-4	0.888	INTERGENIC
3L	7987822	3L_7987822_SNP [dm3] 3L_7994722_SNP [dm6]	C	A	4.257e^-4	0.888	INTRON nmo
X	3546027	X_3546027_SNP [dm3] X_3651994_SNP [dm6]	T	G	4.262e^-4	0.888	INTRON AstA-R1
2L	13944651	2L_13944651_SNP [dm3] 2L_13944651_SNP [dm6]	A	G	4.281e^-4	0.888	DOWNSTREAM CG16884 INTRON Ance-3
3R	12216024	3R_12216024_SNP [dm3] 3R_16390302_SNP [dm6]	C	G	4.289e^-4	0.888	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9956244	2R_9956244_INS [dm3] 2R_14068739_INS [dm6]	T	TT	4.292e^-4	0.888	INTRON Prosap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13787431	2R_13787431_SNP [dm3] 2R_17899926_SNP [dm6]	C	G	4.302e^-4	0.888	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	13090646	3R_13090646_SNP [dm3] 3R_17264924_SNP [dm6]	T	C	4.306e^-4	0.888	UTR_5_PRIME beat-IIb UPSTREAM CG44257
2L	11943856	2L_11943856_SNP [dm3] 2L_11943856_SNP [dm6]	C	A	4.317e^-4	0.888	UPSTREAM Cry INTERGENIC	regulatory region REDfly_CRMs
3R	10174328	3R_10174328_SNP [dm3] 3R_14348606_SNP [dm6]	G	C	4.321e^-4	0.888	INTRON NK7.1
X	5364846	X_5364846_SNP [dm3] X_5470813_SNP [dm6]	T	C	4.328e^-4	0.888	INTRON SPR
2R	16383761	2R_16383761_SNP [dm3] 2R_20496256_SNP [dm6]	C	T	4.336e^-4	0.888	INTERGENIC
2R	13267976	2R_13267976_SNP [dm3] 2R_17380471_SNP [dm6]	A	T	4.343e^-4	0.888	INTERGENIC
2R	10579746	2R_10579746_SNP [dm3] 2R_14692241_SNP [dm6]	T	C	4.346e^-4	0.888	INTRON mspo
2L	7146119	2L_7146119_SNP [dm3] 2L_7146119_SNP [dm6]	T	A	4.350e^-4	0.888	DOWNSTREAM CR44612 INTRON Pvf3
3L	12613437	3L_12613437_SNP [dm3] 3L_12620337_SNP [dm6]	C	G	4.364e^-4	0.888	NON_SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25944523	3R_25944523_SNP [dm3] 3R_30118801_SNP [dm6]	G	A	4.366e^-4	0.888	INTRON sima	TF binding site mE1_TFBS_chinmo
2R	8925195	2R_8925195_SNP [dm3] 2R_13037690_SNP [dm6]	A	T	4.368e^-4	0.888	INTERGENIC
3L	15811579	3L_15811579_SNP [dm3] 3L_15818479_SNP [dm6]	C	G	4.370e^-4	0.888	UTR_3_PRIME CkIIalpha-i1 DOWNSTREAM Dcp2	TF binding site BDTNP1_TFBS_twi
2R	6106429	2R_6106429_SNP [dm3] 2R_10218924_SNP [dm6]	T	G	4.375e^-4	0.888	INTRON Hr46 & 1 other
2R	15766254	2R_15766254_SNP [dm3] 2R_19878749_SNP [dm6]	A	G	4.384e^-4	0.888	DOWNSTREAM CG13872 INTERGENIC
X	5447422	X_5447422_SNP [dm3] X_5553389_SNP [dm6]	T	C	4.388e^-4	0.888	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3R	16274765	3R_16274765_SNP [dm3] 3R_20449043_SNP [dm6]	G	A	4.391e^-4	0.888	INTRON Gfrl
3R	10219037	3R_10219037_SNP [dm3] 3R_14393315_SNP [dm6]	G	C	4.392e^-4	0.888	SYNONYMOUS_CODING cv-c
X	6332911	X_6332911_SNP [dm3] X_6438878_SNP [dm6]	G	C	4.397e^-4	0.888	INTRON CG42340
3R	15673987	3R_15673987_SNP [dm3] 3R_19848265_SNP [dm6]	T	C	4.402e^-4	0.888	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	20200504	X_20200504_SNP [dm3] X_20329477_SNP [dm6]	T	A	4.404e^-4	0.888	START_GAINED CG1504 UTR_5_PRIME CG1504 DOWNSTREAM CG1631 INTRON CG1504	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8844223	2R_8844223_SNP [dm3] 2R_12956718_SNP [dm6]	T	A	4.404e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	16482990	3R_16482990_SNP [dm3] 3R_20657268_SNP [dm6]	A	C	4.404e^-4	0.888	UPSTREAM Nep4 INTRON Nep4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	908559	X_908559_SNP [dm3] X_1014526_SNP [dm6]	A	G	4.404e^-4	0.888	UTR_3_PRIME CG11638 INTRON su_w[a]_
3L	22996151	3L_22996151_SNP [dm3] 3L_23003051_SNP [dm6]	T	C	4.412e^-4	0.888	INTRON nrm	TF binding site BDTNP1_TFBS_dl
2R	17479935	2R_17479935_SNP [dm3] 2R_21592430_SNP [dm6]	T	A	4.413e^-4	0.888	DOWNSTREAM CG33225 INTERGENIC
3L	13730719	3L_13730719_SNP [dm3] 3L_13737619_SNP [dm6]	G	A	4.415e^-4	0.888	INTRON bru-3
3R	17885684	3R_17885684_SNP [dm3] 3R_22059962_SNP [dm6]	A	T	4.415e^-4	0.888	INTRON how
3R	14937567	3R_14937567_SNP [dm3] 3R_19111845_SNP [dm6]	A	T	4.425e^-4	0.888	INTRON CG6040
2L	854654	2L_854654_SNP [dm3] 2L_854654_SNP [dm6]	A	G	4.426e^-4	0.888	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	8605248	3R_8605248_SNP [dm3] 3R_12779526_SNP [dm6]	C	T	4.429e^-4	0.888	INTRON beat-Vc
3L	10924650	3L_10924650_SNP [dm3] 3L_10931550_SNP [dm6]	A	T	4.437e^-4	0.888	INTERGENIC
2L	9044740	2L_9044740_SNP [dm3] 2L_9044740_SNP [dm6]	T	C	4.446e^-4	0.888	INTERGENIC
3L	9027184	3L_9027184_SNP [dm3] 3L_9034084_SNP [dm6]	G	A	4.448e^-4	0.888	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	14689632	3R_14689632_SNP [dm3] 3R_18863910_SNP [dm6]	C	T	4.451e^-4	0.888	INTERGENIC
3L	12434884	3L_12434884_SNP [dm3] 3L_12441784_SNP [dm6]	C	T	4.453e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18086043	3L_18086043_INS [dm3] 3L_18092943_INS [dm6]	T	TCTAGCTTGCTCTTCATTAA...	4.467e^-4	0.888	INTRON CG13698
X	19377692	X_19377692_SNP [dm3] X_19483659_SNP [dm6]	T	C	4.468e^-4	0.888	INTRON Nat1
3L	19014911	3L_19014911_SNP [dm3] 3L_19021811_SNP [dm6]	T	C	4.475e^-4	0.888	INTRON nkd
3R	26969613	3R_26969613_SNP [dm3] 3R_31143891_SNP [dm6]	G	T	4.476e^-4	0.888	INTRON Gycbeta100B
X	11904118	X_11904118_SNP [dm3] X_12010085_SNP [dm6]	T	C	4.482e^-4	0.888	UTR_3_PRIME CG1492 DOWNSTREAM CG1806
X	3450370	X_3450370_SNP [dm3] X_3556337_SNP [dm6]	T	A	4.485e^-4	0.888	INTRON CG32791
3R	19040287	3R_19040287_SNP [dm3] 3R_23214565_SNP [dm6]	C	A	4.487e^-4	0.888	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
3R	12250829	3R_12250829_SNP [dm3] 3R_16425107_SNP [dm6]	T	G	4.491e^-4	0.888	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	18578047	2L_18578047_SNP [dm3] 2L_18578047_SNP [dm6]	G	C	4.492e^-4	0.888	INTRON Pde11
2L	18578053	2L_18578053_SNP [dm3] 2L_18578053_SNP [dm6]	G	A	4.492e^-4	0.888	INTRON Pde11
3L	13726546	3L_13726546_SNP [dm3] 3L_13733446_SNP [dm6]	C	T	4.496e^-4	0.888	INTRON bru-3
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	4.497e^-4	0.888	INTERGENIC
3L	24233834	3L_24233834_SNP [dm3] 3L_24240734_SNP [dm6]	A	T	4.497e^-4	0.888	INTRON Snap25
X	9081161	X_9081161_SNP [dm3] X_9187128_SNP [dm6]	C	A	4.498e^-4	0.888	UTR_3_PRIME mei-P26	TF binding site BDTNP1_TFBS_dl
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	4.504e^-4	0.888	INTERGENIC
3L	8901327	3L_8901327_SNP [dm3] 3L_8908227_SNP [dm6]	G	T	4.521e^-4	0.888	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
3L	824692	3L_824692_SNP [dm3] 3L_824692_SNP [dm6]	A	C	4.529e^-4	0.888	INTERGENIC
2L	3862323	2L_3862323_SNP [dm3] 2L_3862323_SNP [dm6]	T	A	4.534e^-4	0.888	UPSTREAM CG3964 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16498863	3R_16498863_SNP [dm3] 3R_20673141_SNP [dm6]	G	T	4.537e^-4	0.888	DOWNSTREAM Cpr92F INTERGENIC
3R	1292907	3R_1292907_SNP [dm3] 3R_5467185_SNP [dm6]	A	G	4.540e^-4	0.888	UPSTREAM CG12162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13728165	3L_13728165_SNP [dm3] 3L_13735065_SNP [dm6]	C	T	4.544e^-4	0.888	INTRON bru-3
3L	18987000	3L_18987000_SNP [dm3] 3L_18993900_SNP [dm6]	C	G	4.549e^-4	0.888	NON_SYNONYMOUS_CODING CG18135 UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	14496902	2R_14496902_SNP [dm3] 2R_18609397_SNP [dm6]	A	G	4.579e^-4	0.888	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16515673	3R_16515673_SNP [dm3] 3R_20689951_SNP [dm6]	A	G	4.580e^-4	0.888	UTR_3_PRIME Oamb	TF binding site mE1_TFBS_chinmo
2R	9685554	2R_9685554_SNP [dm3] 2R_13798049_SNP [dm6]	T	A	4.589e^-4	0.888	INTRON Cpr50Cb
2L	18289739	2L_18289739_SNP [dm3] 2L_18289739_SNP [dm6]	A	T	4.592e^-4	0.888	DOWNSTREAM CR44696 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12414483	3L_12414483_SNP [dm3] 3L_12421383_SNP [dm6]	C	T	4.592e^-4	0.888	INTERGENIC
3L	15662435	3L_15662435_SNP [dm3] 3L_15669335_SNP [dm6]	A	T	4.596e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5257238	3L_5257238_SNP [dm3] 3L_5264138_SNP [dm6]	G	A	4.603e^-4	0.888	INTRON shep
3L	9768407	3L_9768407_SNP [dm3] 3L_9775307_SNP [dm6]	C	A	4.611e^-4	0.888	INTRON CG8177
X	6332899	X_6332899_SNP [dm3] X_6438866_SNP [dm6]	C	T	4.612e^-4	0.888	INTRON CG42340
2R	11537590	2R_11537590_SNP [dm3] 2R_15650085_SNP [dm6]	A	G	4.614e^-4	0.888	UTR_3_PRIME CG42524 INTRON CG42524
2L	13896571	2L_13896571_SNP [dm3] 2L_13896571_SNP [dm6]	C	T	4.614e^-4	0.888	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	258898	2L_258898_SNP [dm3] 2L_258898_SNP [dm6]	A	C	4.614e^-4	0.888	INTRON CG3645
2L	4151650	2L_4151650_DEL [dm3] 2L_4151650_DEL [dm6]	AAATTGTTGATGTCTTAAGA...	A	4.620e^-4	0.888	DOWNSTREAM CG2955 INTERGENIC
2R	7424321	2R_7424321_SNP [dm3] 2R_11536816_SNP [dm6]	T	C	4.624e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6299534	3L_6299534_DEL [dm3] 3L_6306434_DEL [dm6]	CG	T	4.646e^-4	0.888	UPSTREAM CR45114 DOWNSTREAM CR45113 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15904149	2R_15904149_SNP [dm3] 2R_20016644_SNP [dm6]	G	A	4.649e^-4	0.888	EXON CR44630	TF binding site mE1_TFBS_chinmo
2R	8327274	2R_8327274_SNP [dm3] 2R_12439769_SNP [dm6]	C	G	4.650e^-4	0.888	DOWNSTREAM CG30334 INTRON Dyb
3L	16548659	3L_16548659_SNP [dm3] 3L_16555559_SNP [dm6]	A	G	4.653e^-4	0.888	INTERGENIC
3L	5662319	3L_5662319_DEL [dm3] 3L_5669219_DEL [dm6]	ATA	A	4.654e^-4	0.888	INTRON sif
3R	24452736	3R_24452736_SNP [dm3] 3R_28627014_SNP [dm6]	C	T	4.655e^-4	0.888	INTRON CG10011
X	12353566	X_12353566_SNP [dm3] X_12459533_SNP [dm6]	C	T	4.675e^-4	0.888	DOWNSTREAM Rab40 INTERGENIC
X	17807636	X_17807636_SNP [dm3] X_17913603_SNP [dm6]	G	A	4.675e^-4	0.888	INTRON CG6847
3L	1196839	3L_1196839_SNP [dm3] 3L_1196839_SNP [dm6]	G	T	4.680e^-4	0.888	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23242379	3R_23242379_SNP [dm3] 3R_27416657_SNP [dm6]	C	T	4.685e^-4	0.888	INTRON side
3R	13610026	3R_13610026_SNP [dm3] 3R_17784304_SNP [dm6]	T	G	4.689e^-4	0.888	UPSTREAM CG43102 INTRON CG43102	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	16521724	3R_16521724_SNP [dm3] 3R_20696002_SNP [dm6]	C	T	4.691e^-4	0.888	INTRON Oamb
3L	7852405	3L_7852405_SNP [dm3] 3L_7859305_SNP [dm6]	C	T	4.710e^-4	0.888	INTRON Pdp1
3R	25588044	3R_25588044_SNP [dm3] 3R_29762322_SNP [dm6]	T	C	4.712e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_HSA
X	10886474	X_10886474_SNP [dm3] X_10992441_SNP [dm6]	C	A	4.730e^-4	0.888	INTRON CG42339
3L	4044145	3L_4044145_SNP [dm3] 3L_4044145_SNP [dm6]	T	C	4.731e^-4	0.888	INTERGENIC
3R	9691768	3R_9691768_DEL [dm3] 3R_13866046_DEL [dm6]	TA	T	4.745e^-4	0.888	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	7129662	3L_7129662_SNP [dm3] 3L_7136562_SNP [dm6]	T	G	4.746e^-4	0.888	INTRON melt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12453164	X_12453164_SNP [dm3] X_12559131_SNP [dm6]	G	A	4.751e^-4	0.888	INTRON CG43921
2R	12464689	2R_12464689_SNP [dm3] 2R_16577184_SNP [dm6]	G	A	4.751e^-4	0.888	UPSTREAM CG8317 INTERGENIC
2L	12840597	2L_12840597_SNP [dm3] 2L_12840597_SNP [dm6]	C	A	4.753e^-4	0.888	UPSTREAM CR44970 & 1 other INTERGENIC
3L	11119269	3L_11119269_INS [dm3] 3L_11126169_INS [dm6]	A	AGTT	4.753e^-4	0.888	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	16921207	2L_16921207_SNP [dm3] 2L_16921207_SNP [dm6]	C	T	4.758e^-4	0.888	INTERGENIC
3R	7497804	3R_7497804_SNP [dm3] 3R_11672082_SNP [dm6]	T	G	4.762e^-4	0.888	INTRON CG42327	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16078763	2R_16078763_INS [dm3] 2R_20191258_INS [dm6]	T	TGG	4.763e^-4	0.888	INTERGENIC
2R	8925197	2R_8925197_SNP [dm3] 2R_13037692_SNP [dm6]	A	T	4.764e^-4	0.888	INTERGENIC
3L	7501209	3L_7501209_SNP [dm3] 3L_7508109_SNP [dm6]	C	T	4.766e^-4	0.888	INTERGENIC
3R	22270984	3R_22270984_SNP [dm3] 3R_26445262_SNP [dm6]	A	G	4.766e^-4	0.888	INTRON tx
3R	16599417	3R_16599417_SNP [dm3] 3R_20773695_SNP [dm6]	C	T	4.768e^-4	0.888	INTRON Syp	TF binding site BDTNP1_TFBS_twi
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	4.776e^-4	0.888	UTR_5_PRIME Wnt10
2R	18788056	2R_18788056_SNP [dm3] 2R_22900533_SNP [dm6]	G	T	4.776e^-4	0.888	INTRON nahoda
3R	14311182	3R_14311182_SNP [dm3] 3R_18485460_SNP [dm6]	A	T	4.777e^-4	0.888	INTRON fru
2L	17062166	2L_17062166_SNP [dm3] 2L_17062166_SNP [dm6]	T	C	4.780e^-4	0.888	INTERGENIC
3L	3938555	3L_3938555_SNP [dm3] 3L_3938555_SNP [dm6]	C	T	4.807e^-4	0.888	UPSTREAM CG10866 DOWNSTREAM CG12766 INTERGENIC
3L	10976901	3L_10976901_SNP [dm3] 3L_10983801_SNP [dm6]	G	A	4.809e^-4	0.888	SYNONYMOUS_CODING klu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5090666	2R_5090666_SNP [dm3] 2R_9203161_SNP [dm6]	A	G	4.821e^-4	0.888	INTERGENIC
2R	12794150	2R_12794150_SNP [dm3] 2R_16906645_SNP [dm6]	A	T	4.825e^-4	0.888	INTERGENIC
2R	8342182	2R_8342182_SNP [dm3] 2R_12454677_SNP [dm6]	T	A	4.834e^-4	0.888	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25368418	3R_25368418_SNP [dm3] 3R_29542696_SNP [dm6]	A	C	4.839e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20684698	3R_20684698_SNP [dm3] 3R_24858976_SNP [dm6]	T	A	4.840e^-4	0.888	DOWNSTREAM ppk22 & 1 other INTRON ppk22
3R	19695797	3R_19695797_SNP [dm3] 3R_23870075_SNP [dm6]	T	C	4.841e^-4	0.888	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22894937	3L_22894937_SNP [dm3] 3L_22901837_SNP [dm6]	C	G	4.842e^-4	0.888	UPSTREAM BoYb INTERGENIC
3L	630563	3L_630563_SNP [dm3] 3L_630563_SNP [dm6]	G	T	4.859e^-4	0.888	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25801374	3R_25801374_SNP [dm3] 3R_29975652_SNP [dm6]	C	T	4.859e^-4	0.888	INTERGENIC
3L	511793	3L_511793_SNP [dm3] 3L_511793_SNP [dm6]	T	C	4.864e^-4	0.888	INTRON klar
3L	19959114	3L_19959114_SNP [dm3] 3L_19966014_SNP [dm6]	A	G	4.876e^-4	0.888	INTRON Ac76E
2L	4098697	2L_4098697_SNP [dm3] 2L_4098697_SNP [dm6]	G	A	4.876e^-4	0.888	SYNONYMOUS_CODING ed	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	5310434	2R_5310434_SNP [dm3] 2R_9422929_SNP [dm6]	A	G	4.877e^-4	0.888	INTRON CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14696755	X_14696755_SNP [dm3] X_14802722_SNP [dm6]	G	A	4.877e^-4	0.888	INTRON rut
X	14696731	X_14696731_SNP [dm3] X_14802698_SNP [dm6]	C	T	4.883e^-4	0.888	INTRON rut
X	14696753	X_14696753_INS [dm3] X_14802720_INS [dm6]	A	AGTCATCC	4.883e^-4	0.888	INTRON rut
X	14696761	X_14696761_INS [dm3] X_14802728_INS [dm6]	G	CATTTATCCTTTTATGAAAT...	4.883e^-4	0.888	INTRON rut
3L	8901261	3L_8901261_SNP [dm3] 3L_8908161_SNP [dm6]	C	T	4.888e^-4	0.888	SYNONYMOUS_CODING mfr UTR_3_PRIME mfr
3L	3572735	3L_3572735_INS [dm3] 3L_3572735_INS [dm6]	A	CACAGTTC	4.893e^-4	0.888	INTRON Eip63E
2R	9345445	2R_9345445_SNP [dm3] 2R_13457940_SNP [dm6]	G	A	4.903e^-4	0.888	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25182085	3R_25182085_SNP [dm3] 3R_29356363_SNP [dm6]	G	A	4.904e^-4	0.888	EXON CR45547
X	16826262	X_16826262_SNP [dm3] X_16932229_SNP [dm6]	G	A	4.917e^-4	0.888	INTRON CG4928
3L	3575990	3L_3575990_SNP [dm3] 3L_3575990_SNP [dm6]	T	A	4.918e^-4	0.888	INTRON Eip63E
X	16844844	X_16844844_SNP [dm3] X_16950811_SNP [dm6]	C	G	4.920e^-4	0.888	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2R	8342370	2R_8342370_DEL [dm3] 2R_12454865_DEL [dm6]	ATGTA	A	4.925e^-4	0.888	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	22284174	X_22284174_SNP [dm3] X_22882338_SNP [dm6]	G	C	4.925e^-4	0.888	UTR_3_PRIME CG42346	transposable element FlyBase
2R	7043253	2R_7043253_SNP [dm3] 2R_11155748_SNP [dm6]	A	T	4.933e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
2L	17062225	2L_17062225_SNP [dm3] 2L_17062225_SNP [dm6]	C	T	4.943e^-4	0.888	INTERGENIC
X	18237799	X_18237799_SNP [dm3] X_18343766_SNP [dm6]	T	C	4.943e^-4	0.888	INTRON CG6123	TF binding site mE1_TFBS_chinmo
2R	7043437	2R_7043437_SNP [dm3] 2R_11155932_SNP [dm6]	A	T	4.944e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	4.953e^-4	0.888	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2L	20424981	2L_20424981_SNP [dm3] 2L_20424981_SNP [dm6]	G	A	4.954e^-4	0.888	UPSTREAM CG15130 INTERGENIC
X	3553123	X_3553123_SNP [dm3] X_3659090_SNP [dm6]	A	T	4.961e^-4	0.888	INTRON AstA-R1
2L	2079714	2L_2079714_SNP [dm3] 2L_2079714_SNP [dm6]	T	C	4.963e^-4	0.888	UPSTREAM CG12674 INTRON dpr3
2R	16193243	2R_16193243_SNP [dm3] 2R_20305738_SNP [dm6]	C	G	4.966e^-4	0.888	INTRON CG11200
3R	16504877	3R_16504877_SNP [dm3] 3R_20679155_SNP [dm6]	A	G	4.971e^-4	0.888	DOWNSTREAM CR43452 INTERGENIC
3R	12653069	3R_12653069_SNP [dm3] 3R_16827347_SNP [dm6]	G	A	4.981e^-4	0.888	SYNONYMOUS_CODING abd-A UTR_5_PRIME abd-A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5859202	2R_5859202_SNP [dm3] 2R_9971697_SNP [dm6]	T	C	4.988e^-4	0.888	SYNONYMOUS_CODING CG12134 DOWNSTREAM Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16831073	2R_16831073_SNP [dm3] 2R_20943568_SNP [dm6]	A	G	4.992e^-4	0.888	UPSTREAM Act57B INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16097021	X_16097021_SNP [dm3] X_16202988_SNP [dm6]	C	T	4.993e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	17359679	2R_17359679_SNP [dm3] 2R_21472174_SNP [dm6]	C	G	4.998e^-4	0.888	INTRON Sdc
X	12459010	X_12459010_SNP [dm3] X_12564977_SNP [dm6]	T	G	4.999e^-4	0.888	INTRON CG43921
3L	18948645	3L_18948645_SNP [dm3] 3L_18955545_SNP [dm6]	G	A	5.004e^-4	0.888	DOWNSTREAM CG6836 INTERGENIC
2L	16911601	2L_16911601_SNP [dm3] 2L_16911601_SNP [dm6]	C	T	5.005e^-4	0.888	SYNONYMOUS_CODING tweek	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4146358	2L_4146358_SNP [dm3] 2L_4146358_SNP [dm6]	C	G	5.010e^-4	0.888	INTERGENIC
2L	12840619	2L_12840619_SNP [dm3] 2L_12840619_SNP [dm6]	C	T	5.011e^-4	0.888	UPSTREAM CR44970 & 1 other INTERGENIC
3R	17706245	3R_17706245_SNP [dm3] 3R_21880523_SNP [dm6]	A	C	5.012e^-4	0.888	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG31465 EXON CR45046
3R	13030148	3R_13030148_SNP [dm3] 3R_17204426_SNP [dm6]	A	T	5.018e^-4	0.888	INTERGENIC
3L	4476486	3L_4476486_SNP [dm3] 3L_4476486_SNP [dm6]	A	T	5.024e^-4	0.888	INTERGENIC
2L	6512774	2L_6512774_DEL [dm3] 2L_6512774_DEL [dm6]	AGAAG	A	5.025e^-4	0.888	INTRON CG31637
X	18718629	X_18718629_SNP [dm3] X_18824596_SNP [dm6]	C	T	5.027e^-4	0.888	INTRON CG42450	TF binding site mE1_TFBS_cad
3L	8831597	3L_8831597_SNP [dm3] 3L_8838497_SNP [dm6]	G	A	5.035e^-4	0.888	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16023909	2L_16023909_SNP [dm3] 2L_16023909_SNP [dm6]	T	C	5.040e^-4	0.888	INTRON beat-Ic
3L	13728559	3L_13728559_SNP [dm3] 3L_13735459_SNP [dm6]	C	A	5.053e^-4	0.888	INTRON bru-3
3L	2675233	3L_2675233_SNP [dm3] 3L_2675233_SNP [dm6]	G	T	5.063e^-4	0.888	INTRON Fife
3L	19028318	3L_19028318_SNP [dm3] 3L_19035218_SNP [dm6]	T	A	5.065e^-4	0.888	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	15799429	2R_15799429_SNP [dm3] 2R_19911924_SNP [dm6]	C	G	5.072e^-4	0.888	UPSTREAM CR44573 INTERGENIC
2R	7043237	2R_7043237_SNP [dm3] 2R_11155732_SNP [dm6]	A	C	5.075e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
2R	11920982	2R_11920982_DEL [dm3] 2R_16033477_DEL [dm6]	TACATCAT	T	5.090e^-4	0.888	INTRON SP2353
3R	12568750	3R_12568750_SNP [dm3] 3R_16743028_SNP [dm6]	T	G	5.096e^-4	0.888	DOWNSTREAM bxd INTRON bxd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	22270989	3R_22270989_SNP [dm3] 3R_26445267_SNP [dm6]	G	C	5.113e^-4	0.888	INTRON tx
X	21888625	X_21888625_SNP [dm3] X_22486789_SNP [dm6]	T	C	5.122e^-4	0.888	UPSTREAM l_1_G0196 DOWNSTREAM Cp110 INTRON Cp110
2L	9140589	2L_9140589_SNP [dm3] 2L_9140589_SNP [dm6]	T	G	5.145e^-4	0.888	INTRON CG32982
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	5.148e^-4	0.888	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12869847	2R_12869847_SNP [dm3] 2R_16982342_SNP [dm6]	G	C	5.154e^-4	0.888	INTRON Cbp53E
3L	17685051	3L_17685051_SNP [dm3] 3L_17691951_SNP [dm6]	G	T	5.164e^-4	0.888	INTRON Ccn
3L	14376123	3L_14376123_SNP [dm3] 3L_14383023_SNP [dm6]	T	G	5.169e^-4	0.888	UTR_3_PRIME CG43120
3L	1996667	3L_1996667_SNP [dm3] 3L_1996667_SNP [dm6]	A	G	5.169e^-4	0.888	INTERGENIC
X	2691554	X_2691554_SNP [dm3] X_2797521_SNP [dm6]	G	T	5.170e^-4	0.888	INTRON kirre
3R	7408166	3R_7408166_SNP [dm3] 3R_11582444_SNP [dm6]	T	C	5.176e^-4	0.888	UPSTREAM wkd DOWNSTREAM CG5342 INTRON wkd	TF binding site BDTNP1_TFBS_dl
X	5345059	X_5345059_SNP [dm3] X_5451026_SNP [dm6]	G	A	5.176e^-4	0.888	INTRON SPR
2L	6230080	2L_6230080_SNP [dm3] 2L_6230080_SNP [dm6]	T	A	5.182e^-4	0.888	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18031174	2L_18031174_SNP [dm3] 2L_18031174_SNP [dm6]	A	G	5.199e^-4	0.888	INTRON rdo
3R	22798778	3R_22798778_SNP [dm3] 3R_26973056_SNP [dm6]	A	G	5.201e^-4	0.888	NON_SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7043272	2R_7043272_SNP [dm3] 2R_11155767_SNP [dm6]	A	T	5.203e^-4	0.888	DOWNSTREAM CG13230 INTRON CG13229
2L	9038673	2L_9038673_SNP [dm3] 2L_9038673_SNP [dm6]	C	T	5.206e^-4	0.888	INTERGENIC
3L	10962855	3L_10962855_SNP [dm3] 3L_10969755_SNP [dm6]	C	T	5.213e^-4	0.888	INTERGENIC
3L	630568	3L_630568_SNP [dm3] 3L_630568_SNP [dm6]	C	A	5.216e^-4	0.888	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15661698	3L_15661698_SNP [dm3] 3L_15668598_SNP [dm6]	T	A	5.218e^-4	0.888	INTERGENIC
3R	13445825	3R_13445825_SNP [dm3] 3R_17620103_SNP [dm6]	A	T	5.219e^-4	0.888	DOWNSTREAM tRNA:A:90C & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_z
X	3553645	X_3553645_SNP [dm3] X_3659612_SNP [dm6]	T	C	5.221e^-4	0.888	INTRON AstA-R1
3L	15667876	3L_15667876_DEL [dm3] 3L_15674776_DEL [dm6]	ACTCACCCCATTCACTTT...	A	5.228e^-4	0.888	INTERGENIC	silencer mE1_HDAC_PRE
X	8638295	X_8638295_SNP [dm3] X_8744262_SNP [dm6]	T	C	5.228e^-4	0.888	INTERGENIC
3R	18393517	3R_18393517_SNP [dm3] 3R_22567795_SNP [dm6]	C	T	5.229e^-4	0.888	INTERGENIC
2R	10273873	2R_10273873_SNP [dm3] 2R_14386368_SNP [dm6]	A	T	5.229e^-4	0.888	INTERGENIC
3R	18393481	3R_18393481_DEL [dm3] 3R_22567759_DEL [dm6]	ATCGTAGATC	A	5.245e^-4	0.888	INTERGENIC
2R	434634	2R_434634_SNP [dm3] 2R_4547129_SNP [dm6]	G	T	5.254e^-4	0.888	INTRON Stlk	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1

Missing results

By genomic position
Variant impact
Gene name

Shared_TEs phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results