DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.310e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.05405

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1794 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	2488138	2L_2488138_SNP [dm3] 2L_2488138_SNP [dm6]	T	A	8.257e^-7	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3L	6542226	3L_6542226_SNP [dm3] 3L_6549126_SNP [dm6]	A	T	1.359e^-6	0.809	UTR_3_PRIME sfl
2L	2488114	2L_2488114_SNP [dm3] 2L_2488114_SNP [dm6]	T	A	1.480e^-6	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
X	6880579	X_6880579_SNP [dm3] X_6986546_SNP [dm6]	G	T	2.676e^-6	0.809	UTR_5_PRIME bou UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2R	2051002	2R_2051002_SNP [dm3] 2R_6163497_SNP [dm6]	A	C	2.824e^-6	0.809	UPSTREAM tRNA:K2:42Ac DOWNSTREAM tRNA:N5:42Aa INTRON EcR	transposable element FlyBase
3L	8615750	3L_8615750_SNP [dm3] 3L_8622650_SNP [dm6]	T	C	3.127e^-6	0.809	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2	TF binding site mE1_TFBS_sens
2L	2488122	2L_2488122_SNP [dm3] 2L_2488122_SNP [dm6]	T	A	4.031e^-6	0.809	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3R	14675777	3R_14675777_SNP [dm3] 3R_18850055_SNP [dm6]	T	A	4.110e^-6	0.809	UPSTREAM CG18208 DOWNSTREAM CR45633 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13745473	2L_13745473_SNP [dm3] 2L_13745473_SNP [dm6]	C	G	4.318e^-6	0.809	INTERGENIC
3L	7111439	3L_7111439_SNP [dm3] 3L_7118339_SNP [dm6]	C	T	4.574e^-6	0.809	SYNONYMOUS_CODING form3	TF binding site mE1_TFBS_chinmo
3L	6068385	3L_6068385_SNP [dm3] 3L_6075285_SNP [dm6]	G	C	4.806e^-6	0.809	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
2R	8133130	2R_8133130_SNP [dm3] 2R_12245625_SNP [dm6]	G	C	5.611e^-6	0.809	UPSTREAM CG43244 INTERGENIC
2L	21061321	2L_21061321_SNP [dm3] 2L_21061321_SNP [dm6]	T	G	5.945e^-6	0.809	INTRON CG9265
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	6.171e^-6	0.809	UPSTREAM CG43244 INTERGENIC
3L	10230591	3L_10230591_SNP [dm3] 3L_10237491_SNP [dm6]	G	A	6.478e^-6	0.809	DOWNSTREAM CR44542 INTERGENIC
2R	19585638	2R_19585638_SNP [dm3] 2R_23698115_SNP [dm6]	C	A	6.902e^-6	0.809	UTR_5_PRIME mRpL43 UPSTREAM CG30183 DOWNSTREAM CG4091	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	9459482	2R_9459482_SNP [dm3] 2R_13571977_SNP [dm6]	A	G	7.403e^-6	0.817	INTRON CG42807	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2488108	2L_2488108_SNP [dm3] 2L_2488108_SNP [dm6]	T	G	8.492e^-6	0.874	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2L	2488106	2L_2488106_SNP [dm3] 2L_2488106_SNP [dm6]	G	A	9.534e^-6	0.874	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
X	18466485	X_18466485_SNP [dm3] X_18572452_SNP [dm6]	G	A	9.674e^-6	0.874	UTR_3_PRIME Bx DOWNSTREAM Bx
3R	23480872	3R_23480872_SNP [dm3] 3R_27655150_SNP [dm6]	C	T	9.794e^-6	0.874	INTRON tau
2L	22322001	2L_22322001_SNP [dm3] 2L_22322001_SNP [dm6]	C	T	1.178e^-5	0.968	INTRON CG17018	transposable element FlyBase
X	5208441	X_5208441_SNP [dm3] X_5314408_SNP [dm6]	G	C	1.188e^-5	0.968	NON_SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10764650	3R_10764650_SNP [dm3] 3R_14938928_SNP [dm6]	A	G	1.398e^-5	0.976	INTERGENIC
3L	16553341	3L_16553341_SNP [dm3] 3L_16560241_SNP [dm6]	G	T	1.429e^-5	0.976	INTERGENIC
X	18719096	X_18719096_SNP [dm3] X_18825063_SNP [dm6]	G	A	1.480e^-5	0.976	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10230695	3L_10230695_SNP [dm3] 3L_10237595_SNP [dm6]	G	A	1.555e^-5	0.976	DOWNSTREAM CR44542 INTERGENIC
X	14646736	X_14646736_SNP [dm3] X_14752703_SNP [dm6]	T	C	1.601e^-5	0.976	INTERGENIC
2R	8133105	2R_8133105_SNP [dm3] 2R_12245600_SNP [dm6]	A	C	1.740e^-5	0.976	UPSTREAM CG43244 INTERGENIC
2R	9476276	2R_9476276_SNP [dm3] 2R_13588771_SNP [dm6]	G	C	1.793e^-5	0.976	INTRON CG6191 & 1 other
3L	10230626	3L_10230626_SNP [dm3] 3L_10237526_SNP [dm6]	C	T	1.796e^-5	0.976	DOWNSTREAM CR44542 INTERGENIC
2L	7363705	2L_7363705_SNP [dm3] 2L_7363705_SNP [dm6]	G	A	1.806e^-5	0.976	UTR_5_PRIME Wnt10
3L	16731035	3L_16731035_SNP [dm3] 3L_16737935_SNP [dm6]	G	A	1.868e^-5	0.976	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16731038	3L_16731038_SNP [dm3] 3L_16737938_SNP [dm6]	T	C	1.926e^-5	0.976	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12260774	2R_12260774_SNP [dm3] 2R_16373269_SNP [dm6]	G	T	1.936e^-5	0.976	INTERGENIC
2R	6799802	2R_6799802_SNP [dm3] 2R_10912297_SNP [dm6]	T	C	1.991e^-5	0.976	INTERGENIC
2L	7363621	2L_7363621_SNP [dm3] 2L_7363621_SNP [dm6]	C	A	2.133e^-5	0.976	UTR_5_PRIME Wnt10
2L	1591117	2L_1591117_SNP [dm3] 2L_1591117_SNP [dm6]	T	A	2.146e^-5	0.976	INTRON haf
X	9107596	X_9107596_SNP [dm3] X_9213563_SNP [dm6]	T	G	2.181e^-5	0.976	INTERGENIC
X	5237780	X_5237780_SNP [dm3] X_5343747_SNP [dm6]	C	T	2.236e^-5	0.976	INTRON SK
2L	1284517	2L_1284517_DEL [dm3] 2L_1284517_DEL [dm6]	GACATGG	G	2.269e^-5	0.976	INTRON robo3
2L	10814383	2L_10814383_SNP [dm3] 2L_10814383_SNP [dm6]	T	A	2.271e^-5	0.976	INTRON Nos
2R	8133273	2R_8133273_DEL [dm3] 2R_12245768_DEL [dm6]	ACT	A	2.447e^-5	0.976	DOWNSTREAM CR44315 INTERGENIC
2L	2488072	2L_2488072_INS [dm3] 2L_2488072_INS [dm6]	T	TCTT	2.659e^-5	0.976	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
X	18717963	X_18717963_DEL [dm3] X_18823930_DEL [dm6]	TT	T	2.731e^-5	0.976	INTRON CG42450
X	9107598	X_9107598_SNP [dm3] X_9213565_SNP [dm6]	A	T	2.740e^-5	0.976	INTERGENIC
3R	25906671	3R_25906671_SNP [dm3] 3R_30080949_SNP [dm6]	C	A	2.788e^-5	0.976	INTRON sima
3L	1325184	3L_1325184_SNP [dm3] 3L_1325184_SNP [dm6]	G	A	2.841e^-5	0.976	UTR_5_PRIME Myo61F UPSTREAM CR45166 INTRON Myo61F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14223693	X_14223693_SNP [dm3] X_14329660_SNP [dm6]	A	G	2.847e^-5	0.976	INTRON dpr8
3R	25907851	3R_25907851_SNP [dm3] 3R_30082129_SNP [dm6]	C	A	2.885e^-5	0.976	INTRON sima
2L	2488081	2L_2488081_SNP [dm3] 2L_2488081_SNP [dm6]	A	T	2.936e^-5	0.976	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2L	1591089	2L_1591089_SNP [dm3] 2L_1591089_SNP [dm6]	G	C	3.234e^-5	0.976	INTRON haf
X	15327425	X_15327425_SNP [dm3] X_15433392_SNP [dm6]	A	T	3.449e^-5	0.976	INTRON Cngl	transposable element FlyBase
3R	18390916	3R_18390916_SNP [dm3] 3R_22565194_SNP [dm6]	A	T	3.507e^-5	0.976	INTERGENIC
3R	18792563	3R_18792563_SNP [dm3] 3R_22966841_SNP [dm6]	C	T	3.518e^-5	0.976	SYNONYMOUS_CODING Tpl94D	TF binding site mE1_TFBS_cad
3R	10904075	3R_10904075_SNP [dm3] 3R_15078353_SNP [dm6]	G	A	3.532e^-5	0.976	DOWNSTREAM CG6974 & 1 other INTERGENIC
2R	7835809	2R_7835809_SNP [dm3] 2R_11948304_SNP [dm6]	C	T	3.541e^-5	0.976	INTRON CG13188
3R	12216024	3R_12216024_SNP [dm3] 3R_16390302_SNP [dm6]	C	G	3.585e^-5	0.976	INTRON ss	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13580403	3R_13580403_INS [dm3] 3R_17754681_INS [dm6]	G	GAG	3.688e^-5	0.976	INTRON TyrR
3R	17116277	3R_17116277_SNP [dm3] 3R_21290555_SNP [dm6]	T	C	3.726e^-5	0.976	INTRON SIFaR
X	908567	X_908567_SNP [dm3] X_1014534_SNP [dm6]	C	G	3.769e^-5	0.976	UTR_3_PRIME CG11638 INTRON su_w[a]_
2L	20474163	2L_20474163_SNP [dm3] 2L_20474163_SNP [dm6]	C	T	3.892e^-5	0.976	UPSTREAM CG43233 INTRON CR44980
2L	7490336	2L_7490336_SNP [dm3] 2L_7490336_SNP [dm6]	C	T	3.895e^-5	0.976	INTRON Ziz
3L	15877109	3L_15877109_SNP [dm3] 3L_15884009_SNP [dm6]	T	C	3.949e^-5	0.976	DOWNSTREAM CR44050 INTRON pHCl
3L	4630672	3L_4630672_SNP [dm3] 3L_4630672_SNP [dm6]	C	G	4.001e^-5	0.976	INTRON axo
2L	1324939	2L_1324939_SNP [dm3] 2L_1324939_SNP [dm6]	A	G	4.143e^-5	0.976	INTERGENIC
3R	20017195	3R_20017195_SNP [dm3] 3R_24191473_SNP [dm6]	T	C	4.147e^-5	0.976	NON_SYNONYMOUS_CODING jnj
2L	3373880	2L_3373880_SNP [dm3] 2L_3373880_SNP [dm6]	G	A	4.160e^-5	0.976	SYNONYMOUS_CODING CG15412 UPSTREAM CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20606786	3R_20606786_SNP [dm3] 3R_24781064_SNP [dm6]	G	A	4.325e^-5	0.976	INTRON CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	20435834	2R_20435834_SNP [dm3] 2R_24548311_SNP [dm6]	C	A	4.336e^-5	0.976	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18390972	3R_18390972_SNP [dm3] 3R_22565250_SNP [dm6]	G	A	4.371e^-5	0.976	INTERGENIC
3R	23480876	3R_23480876_SNP [dm3] 3R_27655154_SNP [dm6]	T	A	4.427e^-5	0.976	INTRON tau
3R	23480880	3R_23480880_SNP [dm3] 3R_27655158_SNP [dm6]	T	A	4.427e^-5	0.976	INTRON tau
2L	1284258	2L_1284258_SNP [dm3] 2L_1284258_SNP [dm6]	G	A	4.547e^-5	0.976	INTRON robo3
3R	22018130	3R_22018130_DEL [dm3] 3R_26192408_DEL [dm6]	CAGCTACAACA...	TTTT	4.669e^-5	0.976	INTERGENIC
2L	7548113	2L_7548113_DEL [dm3] 2L_7548113_DEL [dm6]	CAAGA	C	4.712e^-5	0.976	INTRON RapGAP1
X	18719403	X_18719403_SNP [dm3] X_18825370_SNP [dm6]	C	T	4.751e^-5	0.976	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21927458	2L_21927458_SNP [dm3] 2L_21927458_SNP [dm6]	T	C	4.752e^-5	0.976	INTERGENIC	transposable element FlyBase
3R	7295555	3R_7295555_SNP [dm3] 3R_11469833_SNP [dm6]	A	G	4.814e^-5	0.976	INTERGENIC
3R	25908931	3R_25908931_SNP [dm3] 3R_30083209_SNP [dm6]	C	A	4.912e^-5	0.976	INTRON sima
2L	8348730	2L_8348730_INS [dm3] 2L_8348730_INS [dm6]	T	TTTATCGCAAT...	4.970e^-5	0.976	INTRON CG7778
X	18718629	X_18718629_SNP [dm3] X_18824596_SNP [dm6]	C	T	5.019e^-5	0.976	INTRON CG42450	TF binding site mE1_TFBS_cad
X	18466521	X_18466521_SNP [dm3] X_18572488_SNP [dm6]	C	T	5.091e^-5	0.976	UTR_3_PRIME Bx DOWNSTREAM Bx
3L	5689685	3L_5689685_SNP [dm3] 3L_5696585_SNP [dm6]	G	C	5.097e^-5	0.976	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6205832	2L_6205832_SNP [dm3] 2L_6205832_SNP [dm6]	G	C	5.113e^-5	0.976	INTRON CG34380
2L	2591954	2L_2591954_SNP [dm3] 2L_2591954_SNP [dm6]	C	T	5.140e^-5	0.976	START_GAINED CG15394 UTR_5_PRIME CG15394 UPSTREAM CG15394
X	5056165	X_5056165_DEL [dm3] X_5162132_DEL [dm6]	AA	A	5.151e^-5	0.976	INTRON rg & 1 other
2R	19482135	2R_19482135_SNP [dm3] 2R_23594612_SNP [dm6]	G	C	5.170e^-5	0.976	INTRON apt	TF binding site mE1_TFBS_sens
X	5208428	X_5208428_SNP [dm3] X_5314395_SNP [dm6]	T	C	5.264e^-5	0.976	SYNONYMOUS_CODING CG4198 DOWNSTREAM CG15930	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	18717955	X_18717955_INS [dm3] X_18823922_INS [dm6]	T	TAAAATATT	5.267e^-5	0.976	INTRON CG42450
3R	25908915	3R_25908915_DEL [dm3] 3R_30083193_DEL [dm6]	CC	C	5.271e^-5	0.976	INTRON sima
3L	15834527	3L_15834527_SNP [dm3] 3L_15841427_SNP [dm6]	G	A	5.343e^-5	0.976	INTRON CG32150
X	16844980	X_16844980_SNP [dm3] X_16950947_SNP [dm6]	T	C	5.385e^-5	0.976	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	10814349	2L_10814349_SNP [dm3] 2L_10814349_SNP [dm6]	A	G	5.457e^-5	0.976	INTRON Nos
3R	20017063	3R_20017063_SNP [dm3] 3R_24191341_SNP [dm6]	A	G	5.460e^-5	0.976	INTRON jnj
3R	1910418	3R_1910418_INS [dm3] 3R_6084696_INS [dm6]	A	ATTATATAATTTTATT...	5.526e^-5	0.976	INTERGENIC
3R	20017058	3R_20017058_SNP [dm3] 3R_24191336_SNP [dm6]	C	T	5.560e^-5	0.976	INTRON jnj
2L	9390004	2L_9390004_SNP [dm3] 2L_9390004_SNP [dm6]	G	C	5.578e^-5	0.976	INTRON Shawl & 1 other
2L	20474175	2L_20474175_SNP [dm3] 2L_20474175_SNP [dm6]	C	T	5.707e^-5	0.976	UPSTREAM CG43233 INTRON CR44980
3R	25907670	3R_25907670_DEL [dm3] 3R_30081948_DEL [dm6]	CAA	C	5.778e^-5	0.976	INTRON sima
X	14819025	X_14819025_INS [dm3] X_14924992_INS [dm6]	T	TCT	5.817e^-5	0.976	UPSTREAM Flo2 INTRON Flo2
3L	2439565	3L_2439565_SNP [dm3] 3L_2439565_SNP [dm6]	G	C	5.899e^-5	0.976	SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4546687	2L_4546687_SNP [dm3] 2L_4546687_SNP [dm6]	A	G	6.011e^-5	0.976	NON_SYNONYMOUS_CODING dp INTRON dp
3R	14676991	3R_14676991_DEL [dm3] 3R_18851269_DEL [dm6]	CG	T	6.034e^-5	0.976	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
X	14818428	X_14818428_SNP [dm3] X_14924395_SNP [dm6]	T	C	6.129e^-5	0.976	SYNONYMOUS_CODING Flo2 UPSTREAM CG9503
3R	25907514	3R_25907514_DEL [dm3] 3R_30081792_DEL [dm6]	AA	A	6.149e^-5	0.976	INTRON sima
X	5207543	X_5207543_SNP [dm3] X_5313510_SNP [dm6]	T	A	6.336e^-5	0.976	SYNONYMOUS_CODING CG4198 DOWNSTREAM dhd	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21913750	2L_21913750_SNP [dm3] 2L_21913750_SNP [dm6]	A	T	6.390e^-5	0.976	DOWNSTREAM CG31600 INTERGENIC
2R	8586240	2R_8586240_SNP [dm3] 2R_12698735_SNP [dm6]	T	C	6.401e^-5	0.976	INTERGENIC
2L	7550633	2L_7550633_SNP [dm3] 2L_7550633_SNP [dm6]	A	G	6.511e^-5	0.976	INTRON RapGAP1
2L	22020566	2L_22020566_SNP [dm3] 2L_22020566_SNP [dm6]	A	G	6.635e^-5	0.976	DOWNSTREAM CR33987 INTRON tio
X	18720198	X_18720198_SNP [dm3] X_18826165_SNP [dm6]	G	A	6.686e^-5	0.976	SYNONYMOUS_CODING CG42450	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7536029	2L_7536029_SNP [dm3] 2L_7536029_SNP [dm6]	A	G	6.693e^-5	0.976	INTRON RapGAP1	TF binding site mE1_TFBS_cad
X	16826262	X_16826262_SNP [dm3] X_16932229_SNP [dm6]	G	A	6.695e^-5	0.976	INTRON CG4928
2R	8327275	2R_8327275_SNP [dm3] 2R_12439770_SNP [dm6]	G	A	6.737e^-5	0.976	DOWNSTREAM CG30334 INTRON Dyb
2L	16944520	2L_16944520_SNP [dm3] 2L_16944520_SNP [dm6]	G	A	6.864e^-5	0.976	DOWNSTREAM CR43053 INTERGENIC
2R	18143041	2R_18143041_SNP [dm3] 2R_22255536_SNP [dm6]	T	G	6.875e^-5	0.976	INTRON dve	TF binding site mE1_TFBS_sens
3L	6068358	3L_6068358_SNP [dm3] 3L_6075258_SNP [dm6]	T	A	6.980e^-5	0.976	UPSTREAM CG6610 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
3L	9340464	3L_9340464_SNP [dm3] 3L_9347364_SNP [dm6]	C	T	7.050e^-5	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	9340466	3L_9340466_DEL [dm3] 3L_9347366_DEL [dm6]	TT	T	7.050e^-5	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3R	22018049	3R_22018049_SNP [dm3] 3R_26192327_SNP [dm6]	C	G	7.089e^-5	0.976	INTERGENIC
2L	2488068	2L_2488068_SNP [dm3] 2L_2488068_SNP [dm6]	T	G	7.174e^-5	0.976	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	18145505	2R_18145505_DEL [dm3] 2R_22258000_DEL [dm6]	GG	G	7.194e^-5	0.976	INTRON dve	TF binding site mE1_TFBS_chinmo
3R	19995838	3R_19995838_SNP [dm3] 3R_24170116_SNP [dm6]	G	T	7.200e^-5	0.976	UPSTREAM CG5510 INTERGENIC
X	18719451	X_18719451_SNP [dm3] X_18825418_SNP [dm6]	G	C	7.367e^-5	0.976	SYNONYMOUS_CODING CG42450	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9403240	2L_9403240_SNP [dm3] 2L_9403240_SNP [dm6]	C	T	7.473e^-5	0.976	INTRON Shawl
X	908559	X_908559_SNP [dm3] X_1014526_SNP [dm6]	A	G	7.491e^-5	0.976	UTR_3_PRIME CG11638 INTRON su_w[a]_
3L	6542320	3L_6542320_SNP [dm3] 3L_6549220_SNP [dm6]	C	G	7.670e^-5	0.976	UTR_3_PRIME sfl
2L	15508712	2L_15508712_SNP [dm3] 2L_15508712_SNP [dm6]	G	A	7.723e^-5	0.976	INTERGENIC
3R	18094751	3R_18094751_SNP [dm3] 3R_22269029_SNP [dm6]	G	A	7.750e^-5	0.976	INTRON SKIP
3R	20016930	3R_20016930_SNP [dm3] 3R_24191208_SNP [dm6]	T	A	7.766e^-5	0.976	SYNONYMOUS_CODING jnj
3R	14676984	3R_14676984_SNP [dm3] 3R_18851262_SNP [dm6]	C	T	7.778e^-5	0.976	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2R	17652530	2R_17652530_SNP [dm3] 2R_21765025_SNP [dm6]	C	T	7.821e^-5	0.976	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
2L	3665280	2L_3665280_SNP [dm3] 2L_3665280_SNP [dm6]	T	C	7.895e^-5	0.976	INTRON CG34340
2L	1505322	2L_1505322_SNP [dm3] 2L_1505322_SNP [dm6]	C	T	7.914e^-5	0.976	INTERGENIC
3R	18390882	3R_18390882_INS [dm3] 3R_22565160_INS [dm6]	T	TGGTA	7.923e^-5	0.976	INTERGENIC
2L	17958344	2L_17958344_SNP [dm3] 2L_17958344_SNP [dm6]	T	A	7.940e^-5	0.976	INTERGENIC
2R	20374772	2R_20374772_SNP [dm3] 2R_24487249_SNP [dm6]	T	C	7.972e^-5	0.976	INTRON CG13579	TF binding site mE1_TFBS_cad
2L	4554214	2L_4554214_SNP [dm3] 2L_4554214_SNP [dm6]	G	A	8.093e^-5	0.976	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18717908	X_18717908_DEL [dm3] X_18823875_DEL [dm6]	GGCAACTAAAGATATTTGAT...	G	8.102e^-5	0.976	INTRON CG42450
3R	17630325	3R_17630325_SNP [dm3] 3R_21804603_SNP [dm6]	C	A	8.120e^-5	0.976	UTR_5_PRIME CASK INTRON CASK	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8348723	2L_8348723_INS [dm3] 2L_8348723_INS [dm6]	T	TCAT	8.148e^-5	0.976	INTRON CG7778
2R	7392038	2R_7392038_SNP [dm3] 2R_11504533_SNP [dm6]	A	C	8.185e^-5	0.976	INTRON inv
3R	13558077	3R_13558077_SNP [dm3] 3R_17732355_SNP [dm6]	T	C	8.222e^-5	0.976	INTRON Lgr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2749204	3L_2749204_SNP [dm3] 3L_2749204_SNP [dm6]	A	G	8.234e^-5	0.976	INTRON Mrtf
X	12079989	X_12079989_SNP [dm3] X_12185956_SNP [dm6]	C	G	8.292e^-5	0.976	INTRON Ten-a
3L	2222255	3L_2222255_SNP [dm3] 3L_2222255_SNP [dm6]	G	A	8.330e^-5	0.976	INTERGENIC
2L	9390011	2L_9390011_SNP [dm3] 2L_9390011_SNP [dm6]	C	T	8.347e^-5	0.976	INTRON Shawl & 1 other
3L	9339346	3L_9339346_DEL [dm3] 3L_9346246_DEL [dm6]	GTC	AA	8.349e^-5	0.976	UTR_3_PRIME PGRP-LC INTRON PGRP-LC
2L	7492720	2L_7492720_SNP [dm3] 2L_7492720_SNP [dm6]	A	T	8.528e^-5	0.976	INTRON Ziz
2R	7838631	2R_7838631_MNP [dm3] 2R_11951126_MNP [dm6]	CCA	GGT	8.653e^-5	0.976	INTRON CG13188
2R	9449435	2R_9449435_SNP [dm3] 2R_13561930_SNP [dm6]	C	T	8.724e^-5	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	21913132	2L_21913132_SNP [dm3] 2L_21913132_SNP [dm6]	G	A	8.886e^-5	0.976	INTERGENIC	transposable element FlyBase
X	14818649	X_14818649_SNP [dm3] X_14924616_SNP [dm6]	T	G	8.915e^-5	0.976	INTRON Flo2
2L	7548086	2L_7548086_SNP [dm3] 2L_7548086_SNP [dm6]	A	G	8.954e^-5	0.976	INTRON RapGAP1
2L	20412981	2L_20412981_SNP [dm3] 2L_20412981_SNP [dm6]	C	G	9.003e^-5	0.976	INTRON CG10947
2L	7133482	2L_7133482_SNP [dm3] 2L_7133482_SNP [dm6]	A	C	9.009e^-5	0.976	START_GAINED Pvf3 UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7133460	2L_7133460_SNP [dm3] 2L_7133460_SNP [dm6]	C	T	9.090e^-5	0.976	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20919249	3R_20919249_SNP [dm3] 3R_25093527_SNP [dm6]	G	A	9.120e^-5	0.976	INTERGENIC
3R	25907637	3R_25907637_SNP [dm3] 3R_30081915_SNP [dm6]	A	C	9.137e^-5	0.976	INTRON sima
3R	20919897	3R_20919897_SNP [dm3] 3R_25094175_SNP [dm6]	T	G	9.141e^-5	0.976	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12454769	2L_12454769_SNP [dm3] 2L_12454769_SNP [dm6]	T	C	9.166e^-5	0.976	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
2L	7492645	2L_7492645_SNP [dm3] 2L_7492645_SNP [dm6]	C	A	9.261e^-5	0.976	INTRON Ziz
X	16606889	X_16606889_DEL [dm3] X_16712856_DEL [dm6]	CTCCCAATCC	C	9.440e^-5	0.976		TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10199285	3R_10199285_SNP [dm3] 3R_14373563_SNP [dm6]	G	A	9.472e^-5	0.976	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	10554173	3R_10554173_INS [dm3] 3R_14728451_INS [dm6]	A	AGTGC	9.490e^-5	0.976	INTRON CG7530
2L	11829242	2L_11829242_SNP [dm3] 2L_11829242_SNP [dm6]	C	A	9.495e^-5	0.976	UTR_5_PRIME esc INTRON Pde1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	17617981	3L_17617981_SNP [dm3] 3L_17624881_SNP [dm6]	A	G	9.499e^-5	0.976	INTRON CG7510
2R	18143004	2R_18143004_SNP [dm3] 2R_22255499_SNP [dm6]	C	T	9.597e^-5	0.976	INTRON dve	TF binding site mE1_TFBS_sens
3R	20919891	3R_20919891_SNP [dm3] 3R_25094169_SNP [dm6]	C	A	9.674e^-5	0.976	UPSTREAM fd96Cb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	17683770	3L_17683770_SNP [dm3] 3L_17690670_SNP [dm6]	A	G	9.849e^-5	0.976	INTRON Ccn
3L	2749198	3L_2749198_SNP [dm3] 3L_2749198_SNP [dm6]	A	C	9.899e^-5	0.976	INTRON Mrtf
3L	15899108	3L_15899108_SNP [dm3] 3L_15906008_SNP [dm6]	T	C	9.984e^-5	0.976	SYNONYMOUS_CODING sff
2L	17049631	2L_17049631_SNP [dm3] 2L_17049631_SNP [dm6]	G	A	1.004e^-4	0.976	INTERGENIC
X	15327450	X_15327450_DEL [dm3] X_15433417_DEL [dm6]	GATTGTGGGCGTTCGAGTGG...	G	1.008e^-4	0.976	INTRON Cngl	transposable element FlyBase
3L	7583305	3L_7583305_SNP [dm3] 3L_7590205_SNP [dm6]	G	A	1.009e^-4	0.976	SYNONYMOUS_CODING CG7716
3R	18797071	3R_18797071_SNP [dm3] 3R_22971349_SNP [dm6]	C	A	1.009e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6245013	2L_6245013_SNP [dm3] 2L_6245013_SNP [dm6]	C	A	1.014e^-4	0.976	INTERGENIC
2R	14357003	2R_14357003_SNP [dm3] 2R_18469498_SNP [dm6]	T	G	1.016e^-4	0.976	SPLICE_SITE_REGION CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11615679	2L_11615679_SNP [dm3] 2L_11615679_SNP [dm6]	A	C	1.020e^-4	0.976	INTRON kek2
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	1.021e^-4	0.976	INTERGENIC
2R	10141106	2R_10141106_SNP [dm3] 2R_14253601_SNP [dm6]	A	G	1.023e^-4	0.976	SYNONYMOUS_CODING Hsc70-5
X	14224397	X_14224397_SNP [dm3] X_14330364_SNP [dm6]	G	A	1.025e^-4	0.976	INTRON dpr8
2R	14147972	2R_14147972_DEL [dm3] 2R_18260467_DEL [dm6]	GA	G	1.037e^-4	0.976	INTERGENIC
3R	20017323	3R_20017323_SNP [dm3] 3R_24191601_SNP [dm6]	C	T	1.055e^-4	0.976	NON_SYNONYMOUS_CODING jnj
3L	11330547	3L_11330547_SNP [dm3] 3L_11337447_SNP [dm6]	G	A	1.060e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_sens
3L	10229529	3L_10229529_SNP [dm3] 3L_10236429_SNP [dm6]	G	A	1.062e^-4	0.976	UPSTREAM CR44542 INTERGENIC
3L	16731023	3L_16731023_SNP [dm3] 3L_16737923_SNP [dm6]	C	T	1.070e^-4	0.976	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16731026	3L_16731026_SNP [dm3] 3L_16737926_SNP [dm6]	C	A	1.070e^-4	0.976	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21061503	2L_21061503_SNP [dm3] 2L_21061503_SNP [dm6]	A	T	1.072e^-4	0.976	INTRON CG9265
2R	4698706	2R_4698706_SNP [dm3] 2R_8811201_SNP [dm6]	C	T	1.075e^-4	0.976	INTRON sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	11674181	3R_11674181_SNP [dm3] 3R_15848459_SNP [dm6]	A	G	1.076e^-4	0.976	SYNONYMOUS_CODING cv-d DOWNSTREAM CG4546
X	19092325	X_19092325_SNP [dm3] X_19198292_SNP [dm6]	G	T	1.084e^-4	0.976	SYNONYMOUS_CODING CG7990 UTR_3_PRIME CG7990 DOWNSTREAM CG7990	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1505343	2L_1505343_SNP [dm3] 2L_1505343_SNP [dm6]	C	T	1.097e^-4	0.976	INTERGENIC
3L	15820759	3L_15820759_SNP [dm3] 3L_15827659_SNP [dm6]	G	C	1.098e^-4	0.976	INTRON dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18143110	2R_18143110_SNP [dm3] 2R_22255605_SNP [dm6]	G	C	1.100e^-4	0.976	INTRON dve	TF binding site mE1_TFBS_sens
2R	14147985	2R_14147985_SNP [dm3] 2R_18260480_SNP [dm6]	C	T	1.103e^-4	0.976	INTERGENIC
2R	20434601	2R_20434601_SNP [dm3] 2R_24547078_SNP [dm6]	A	T	1.104e^-4	0.976	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14990262	2R_14990262_SNP [dm3] 2R_19102757_SNP [dm6]	G	C	1.108e^-4	0.976	INTRON 5-HT1A
2R	18143206	2R_18143206_SNP [dm3] 2R_22255701_SNP [dm6]	C	A	1.114e^-4	0.976	INTRON dve	TF binding site mE1_TFBS_sens
3L	6542208	3L_6542208_SNP [dm3] 3L_6549108_SNP [dm6]	T	A	1.116e^-4	0.976	UTR_3_PRIME sfl
2R	5814960	2R_5814960_SNP [dm3] 2R_9927455_SNP [dm6]	C	T	1.116e^-4	0.976	INTRON Mef2
3R	14330990	3R_14330990_SNP [dm3] 3R_18505268_SNP [dm6]	C	T	1.137e^-4	0.976	INTRON fru
2R	17652529	2R_17652529_SNP [dm3] 2R_21765024_SNP [dm6]	T	A	1.137e^-4	0.976	UPSTREAM CG30395 DOWNSTREAM CG43982 EXON CR43984	TF binding site BDTNP1_TFBS_dl
3L	2834652	3L_2834652_SNP [dm3] 3L_2834652_SNP [dm6]	G	A	1.138e^-4	0.976	INTRON CG43444
2R	409302	2R_409302_SNP [dm3] 2R_4521797_SNP [dm6]	T	C	1.148e^-4	0.976	INTERGENIC
2R	18279287	2R_18279287_SNP [dm3] 2R_22391782_SNP [dm6]	T	C	1.150e^-4	0.976	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22382112	3R_22382112_SNP [dm3] 3R_26556390_SNP [dm6]	A	G	1.150e^-4	0.976	INTRON scrib
2R	14496902	2R_14496902_SNP [dm3] 2R_18609397_SNP [dm6]	A	G	1.156e^-4	0.976	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9249164	2R_9249164_SNP [dm3] 2R_13361659_SNP [dm6]	A	C	1.165e^-4	0.976	DOWNSTREAM CR45312 INTERGENIC
2L	1505089	2L_1505089_SNP [dm3] 2L_1505089_SNP [dm6]	T	C	1.179e^-4	0.976	DOWNSTREAM CR44064 INTERGENIC
3L	5769021	3L_5769021_SNP [dm3] 3L_5775921_SNP [dm6]	C	T	1.183e^-4	0.976	UTR_3_PRIME scny DOWNSTREAM vito & 1 other
2L	21978469	2L_21978469_SNP [dm3] 2L_21978469_SNP [dm6]	C	T	1.185e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7492255	2L_7492255_SNP [dm3] 2L_7492255_SNP [dm6]	A	T	1.204e^-4	0.976	INTRON Ziz	TF binding site BDTNP1_TFBS_dl
X	18717771	X_18717771_SNP [dm3] X_18823738_SNP [dm6]	A	T	1.205e^-4	0.976	INTRON CG42450
3R	16616373	3R_16616373_SNP [dm3] 3R_20790651_SNP [dm6]	G	C	1.209e^-4	0.976	INTRON Syp
X	16813089	X_16813089_SNP [dm3] X_16919056_SNP [dm6]	C	T	1.233e^-4	0.976	INTRON CG4928
3L	15825028	3L_15825028_SNP [dm3] 3L_15831928_SNP [dm6]	A	T	1.234e^-4	0.976	UTR_3_PRIME dbo UPSTREAM CG12713 DOWNSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	3445369	2L_3445369_SNP [dm3] 2L_3445369_SNP [dm6]	A	G	1.236e^-4	0.976	UPSTREAM CG2772 INTERGENIC
2L	14431966	2L_14431966_SNP [dm3] 2L_14431966_SNP [dm6]	A	G	1.241e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16731029	3L_16731029_SNP [dm3] 3L_16737929_SNP [dm6]	T	C	1.258e^-4	0.976	SYNONYMOUS_CODING CG9701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14535386	2L_14535386_SNP [dm3] 2L_14535386_SNP [dm6]	C	T	1.263e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7315737	3R_7315737_SNP [dm3] 3R_11490015_SNP [dm6]	T	A	1.265e^-4	0.976	INTERGENIC
2R	8327274	2R_8327274_SNP [dm3] 2R_12439769_SNP [dm6]	C	G	1.266e^-4	0.976	DOWNSTREAM CG30334 INTRON Dyb
2L	14431988	2L_14431988_SNP [dm3] 2L_14431988_SNP [dm6]	C	T	1.268e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	24706749	3R_24706749_SNP [dm3] 3R_28881027_SNP [dm6]	G	A	1.284e^-4	0.976	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
2R	4646797	2R_4646797_SNP [dm3] 2R_8759292_SNP [dm6]	G	A	1.288e^-4	0.976	NON_SYNONYMOUS_CODING CG8740	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	11581023	3R_11581023_SNP [dm3] 3R_15755301_SNP [dm6]	C	T	1.302e^-4	0.976	INTERGENIC
3L	5691399	3L_5691399_SNP [dm3] 3L_5698299_SNP [dm6]	T	G	1.313e^-4	0.976	NON_SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	925759	2L_925759_SNP [dm3] 2L_925759_SNP [dm6]	C	T	1.318e^-4	0.976	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2749197	3L_2749197_SNP [dm3] 3L_2749197_SNP [dm6]	A	T	1.330e^-4	0.976	INTRON Mrtf
3L	15819400	3L_15819400_SNP [dm3] 3L_15826300_SNP [dm6]	A	T	1.335e^-4	0.976	UTR_5_PRIME Dcp2 UPSTREAM dbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
X	14666160	X_14666160_SNP [dm3] X_14772127_SNP [dm6]	G	A	1.352e^-4	0.976	INTERGENIC
2L	1284385	2L_1284385_SNP [dm3] 2L_1284385_SNP [dm6]	G	A	1.355e^-4	0.976	INTRON robo3
2L	19019180	2L_19019180_SNP [dm3] 2L_19019180_SNP [dm6]	C	A	1.356e^-4	0.976	DOWNSTREAM CR44184 INTERGENIC
3R	1910407	3R_1910407_SNP [dm3] 3R_6084685_SNP [dm6]	T	C	1.365e^-4	0.976	INTERGENIC
2L	16401138	2L_16401138_SNP [dm3] 2L_16401138_SNP [dm6]	G	A	1.387e^-4	0.976	INTRON CG5888
X	10883880	X_10883880_SNP [dm3] X_10989847_SNP [dm6]	A	C	1.402e^-4	0.976	INTRON CG42339
3L	5690084	3L_5690084_SNP [dm3] 3L_5696984_SNP [dm6]	G	T	1.406e^-4	0.976	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7094214	2L_7094214_INS [dm3] 2L_7094214_INS [dm6]	A	AGCAGCA	1.425e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19187745	3R_19187745_SNP [dm3] 3R_23362023_SNP [dm6]	G	T	1.431e^-4	0.976	UTR_3_PRIME CG4408	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11759237	2L_11759237_SNP [dm3] 2L_11759237_SNP [dm6]	A	C	1.447e^-4	0.976	INTERGENIC
3L	6772294	3L_6772294_SNP [dm3] 3L_6779194_SNP [dm6]	C	G	1.470e^-4	0.976	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs
2L	316293	2L_316293_SNP [dm3] 2L_316293_SNP [dm6]	C	A	1.486e^-4	0.976	INTRON Plc21C
3L	3572735	3L_3572735_INS [dm3] 3L_3572735_INS [dm6]	A	CACAGTTC	1.487e^-4	0.976	INTRON Eip63E
2R	7833331	2R_7833331_SNP [dm3] 2R_11945826_SNP [dm6]	T	A	1.489e^-4	0.976	INTRON CG13188
3L	1368309	3L_1368309_SNP [dm3] 3L_1368309_SNP [dm6]	G	A	1.492e^-4	0.976	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14678909	3R_14678909_DEL [dm3] 3R_18853187_DEL [dm6]	CC	C	1.492e^-4	0.976	INTERGENIC
2L	7531736	2L_7531736_SNP [dm3] 2L_7531736_SNP [dm6]	T	C	1.493e^-4	0.976	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	18718099	X_18718099_SNP [dm3] X_18824066_SNP [dm6]	G	A	1.499e^-4	0.976	INTRON CG42450
2L	8349039	2L_8349039_SNP [dm3] 2L_8349039_SNP [dm6]	A	G	1.500e^-4	0.976	INTRON CG7778
2R	13834005	2R_13834005_SNP [dm3] 2R_17946500_SNP [dm6]	G	A	1.502e^-4	0.976	INTERGENIC
2L	7133468	2L_7133468_SNP [dm3] 2L_7133468_SNP [dm6]	T	A	1.503e^-4	0.976	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4478578	2L_4478578_SNP [dm3] 2L_4478578_SNP [dm6]	T	G	1.503e^-4	0.976	UTR_3_PRIME dp DOWNSTREAM dp
3L	6532070	3L_6532070_SNP [dm3] 3L_6538970_SNP [dm6]	T	C	1.517e^-4	0.976	INTRON sfl
2L	22021358	2L_22021358_SNP [dm3] 2L_22021358_SNP [dm6]	C	T	1.523e^-4	0.976	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11192592	2R_11192592_DEL [dm3] 2R_15305087_DEL [dm6]	CT	C	1.528e^-4	0.976	INTRON Trpm
2R	14542290	2R_14542290_SNP [dm3] 2R_18654785_SNP [dm6]	A	G	1.538e^-4	0.976	INTRON SP2637	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7274630	3L_7274630_DEL [dm3] 3L_7281530_DEL [dm6]	CGTGTGTTTGTGT...	C	1.538e^-4	0.976	INTRON unc-13-4A
2R	18233644	2R_18233644_SNP [dm3] 2R_22346139_SNP [dm6]	C	T	1.540e^-4	0.976	NON_SYNONYMOUS_CODING Liprin-gamma INTRON Liprin-gamma
3L	8944700	3L_8944700_SNP [dm3] 3L_8951600_SNP [dm6]	A	C	1.542e^-4	0.976	INTRON orb2 & 1 other
2R	14535046	2R_14535046_SNP [dm3] 2R_18647541_SNP [dm6]	A	T	1.552e^-4	0.976	INTRON SP2637	TF binding site BDTNP1_TFBS_twi
X	14804805	X_14804805_INS [dm3] X_14910772_INS [dm6]	C	CAATTTTGTTAAACGTGGGC...	1.552e^-4	0.976	INTRON Flo2
3L	5098484	3L_5098484_SNP [dm3] 3L_5098484_SNP [dm6]	A	C	1.561e^-4	0.976	EXON CR34047
2R	7918080	2R_7918080_SNP [dm3] 2R_12030575_SNP [dm6]	C	A	1.582e^-4	0.976	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA
X	8288321	X_8288321_SNP [dm3] X_8394288_SNP [dm6]	A	C	1.582e^-4	0.976	INTERGENIC
2L	316704	2L_316704_SNP [dm3] 2L_316704_SNP [dm6]	A	T	1.588e^-4	0.976	INTRON Plc21C
2L	6698598	2L_6698598_SNP [dm3] 2L_6698598_SNP [dm6]	A	G	1.596e^-4	0.976	INTRON Tsp
2L	855323	2L_855323_SNP [dm3] 2L_855323_SNP [dm6]	G	A	1.600e^-4	0.976	UPSTREAM CG13949 DOWNSTREAM kraken INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4916244	2L_4916244_SNP [dm3] 2L_4916244_SNP [dm6]	C	T	1.601e^-4	0.976	UPSTREAM hoe1 INTRON hoe1
X	16606189	X_16606189_SNP [dm3] X_16712156_SNP [dm6]	T	C	1.607e^-4	0.976	NON_SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22024816	3R_22024816_SNP [dm3] 3R_26199094_SNP [dm6]	A	G	1.620e^-4	0.976	INTRON CR44320
2L	12454590	2L_12454590_SNP [dm3] 2L_12454590_SNP [dm6]	G	T	1.637e^-4	0.976	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9263570	2L_9263570_DEL [dm3] 2L_9263570_DEL [dm6]	CC	C	1.673e^-4	0.976	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7357451	2L_7357451_SNP [dm3] 2L_7357451_SNP [dm6]	G	A	1.674e^-4	0.976	INTERGENIC
2L	14432015	2L_14432015_SNP [dm3] 2L_14432015_SNP [dm6]	G	A	1.678e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	7853841	3L_7853841_SNP [dm3] 3L_7860741_SNP [dm6]	C	A	1.686e^-4	0.976	INTRON Pdp1
2R	15039209	2R_15039209_SNP [dm3] 2R_19151704_SNP [dm6]	T	A	1.698e^-4	0.976	INTRON ena	TF binding site mE1_TFBS_HSA
2R	19666250	2R_19666250_SNP [dm3] 2R_23778727_SNP [dm6]	T	C	1.699e^-4	0.976	INTRON CG9850
2L	9416993	2L_9416993_SNP [dm3] 2L_9416993_SNP [dm6]	T	A	1.702e^-4	0.976	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16844971	X_16844971_SNP [dm3] X_16950938_SNP [dm6]	C	T	1.702e^-4	0.976	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	16844977	X_16844977_DEL [dm3] X_16950944_DEL [dm6]	TA	G	1.702e^-4	0.976	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
X	20005044	X_20005044_SNP [dm3] X_20111011_SNP [dm6]	T	A	1.713e^-4	0.976	UPSTREAM karr INTERGENIC
2L	10504045	2L_10504045_SNP [dm3] 2L_10504045_SNP [dm6]	T	C	1.715e^-4	0.976	INTRON Myo31DF
2L	20064873	2L_20064873_SNP [dm3] 2L_20064873_SNP [dm6]	G	C	1.716e^-4	0.976	SYNONYMOUS_CODING vls DOWNSTREAM lok	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10186005	X_10186005_SNP [dm3] X_10291972_SNP [dm6]	C	G	1.729e^-4	0.976	INTRON alpha-Man-I
3L	16875872	3L_16875872_SNP [dm3] 3L_16882772_SNP [dm6]	T	A	1.748e^-4	0.976	INTRON Lmpt
2L	22021375	2L_22021375_SNP [dm3] 2L_22021375_SNP [dm6]	A	G	1.752e^-4	0.976	SYNONYMOUS_CODING tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	13899317	3R_13899317_SNP [dm3] 3R_18073595_SNP [dm6]	C	T	1.758e^-4	0.976	INTERGENIC
2R	9247738	2R_9247738_SNP [dm3] 2R_13360233_SNP [dm6]	C	A	1.763e^-4	0.976	INTERGENIC
2L	19097127	2L_19097127_SNP [dm3] 2L_19097127_SNP [dm6]	T	C	1.768e^-4	0.976	INTRON Lim3
X	8835898	X_8835898_SNP [dm3] X_8941865_SNP [dm6]	C	A	1.770e^-4	0.976	INTRON rdgA
3L	17159191	3L_17159191_SNP [dm3] 3L_17166091_SNP [dm6]	C	G	1.778e^-4	0.976	UPSTREAM CR43433 INTRON Rbp6
X	14817489	X_14817489_DEL [dm3] X_14923456_DEL [dm6]	AA	A	1.784e^-4	0.976	UTR_5_PRIME CG9503 INTRON Flo2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	5691635	3L_5691635_SNP [dm3] 3L_5698535_SNP [dm6]	A	C	1.786e^-4	0.976	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16991961	3L_16991961_SNP [dm3] 3L_16998861_SNP [dm6]	A	G	1.798e^-4	0.976	SYNONYMOUS_CODING CG3764 UPSTREAM mir-2500	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20017110	3R_20017110_SNP [dm3] 3R_24191388_SNP [dm6]	C	T	1.806e^-4	0.976	NON_SYNONYMOUS_CODING jnj
2L	1591916	2L_1591916_DEL [dm3] 2L_1591916_DEL [dm6]	AATATTCTTTAATGAATACT...	A	1.811e^-4	0.976	INTRON haf
X	14646734	X_14646734_SNP [dm3] X_14752701_SNP [dm6]	C	T	1.815e^-4	0.976	INTERGENIC
3R	25907613	3R_25907613_SNP [dm3] 3R_30081891_SNP [dm6]	C	T	1.819e^-4	0.976	INTRON sima
3L	11330538	3L_11330538_SNP [dm3] 3L_11337438_SNP [dm6]	C	A	1.823e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_sens
X	10185817	X_10185817_INS [dm3] X_10291784_INS [dm6]	C	TAGATTCGTTGAA...	1.827e^-4	0.976	INTRON alpha-Man-I
3L	9340497	3L_9340497_INS [dm3] 3L_9347397_INS [dm6]	CA	ATTT	1.831e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	12470353	2R_12470353_SNP [dm3] 2R_16582848_SNP [dm6]	T	G	1.834e^-4	0.976	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	21913134	2L_21913134_INS [dm3] 2L_21913134_INS [dm6]	A	AA	1.844e^-4	0.976	INTERGENIC	transposable element FlyBase
2L	17876483	2L_17876483_SNP [dm3] 2L_17876483_SNP [dm6]	C	T	1.856e^-4	0.976	INTERGENIC
3L	1376855	3L_1376855_SNP [dm3] 3L_1376855_SNP [dm6]	T	C	1.858e^-4	0.976	INTRON Ptp61F & 1 other
3L	6075578	3L_6075578_DEL [dm3] 3L_6082478_DEL [dm6]	TT	T	1.863e^-4	0.976	UTR_3_PRIME CG6619 UPSTREAM CG13293 DOWNSTREAM CG6619	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15475219	2L_15475219_SNP [dm3] 2L_15475219_SNP [dm6]	T	C	1.863e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26870389	3R_26870389_SNP [dm3] 3R_31044667_SNP [dm6]	T	A	1.864e^-4	0.976	SYNONYMOUS_CODING CG33920 INTRON CanA1
2R	3576597	2R_3576597_SNP [dm3] 2R_7689092_SNP [dm6]	G	T	1.901e^-4	0.976	INTRON CG1399
3L	9340493	3L_9340493_SNP [dm3] 3L_9347393_SNP [dm6]	C	A	1.909e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2R	21075664	2R_21075664_SNP [dm3] 2R_25188141_SNP [dm6]	G	T	1.911e^-4	0.976	SYNONYMOUS_CODING CG9380
2L	8953388	2L_8953388_DEL [dm3] 2L_8953388_DEL [dm6]	TT	T	1.912e^-4	0.976	DOWNSTREAM CG31886 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10451227	2L_10451227_SNP [dm3] 2L_10451227_SNP [dm6]	C	A	1.913e^-4	0.976	NON_SYNONYMOUS_CODING ppk10
X	10185840	X_10185840_SNP [dm3] X_10291807_SNP [dm6]	G	T	1.917e^-4	0.976	INTRON alpha-Man-I
2R	18279434	2R_18279434_SNP [dm3] 2R_22391929_SNP [dm6]	C	T	1.927e^-4	0.976	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1591093	2L_1591093_SNP [dm3] 2L_1591093_SNP [dm6]	A	T	1.931e^-4	0.976	INTRON haf
3L	15823502	3L_15823502_SNP [dm3] 3L_15830402_SNP [dm6]	C	T	1.941e^-4	0.976	SYNONYMOUS_CODING dbo
2L	16709913	2L_16709913_SNP [dm3] 2L_16709913_SNP [dm6]	T	C	1.945e^-4	0.976	INTRON CG31808
2L	8314042	2L_8314042_SNP [dm3] 2L_8314042_SNP [dm6]	T	G	1.995e^-4	0.976	SYNONYMOUS_CODING CG7806
2L	15475021	2L_15475021_SNP [dm3] 2L_15475021_SNP [dm6]	A	G	1.997e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18142761	2R_18142761_SNP [dm3] 2R_22255256_SNP [dm6]	T	A	2.003e^-4	0.976	INTRON dve	TF binding site mE1_TFBS_sens
3R	12631031	3R_12631031_SNP [dm3] 3R_16805309_SNP [dm6]	T	C	2.007e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7283874	3L_7283874_SNP [dm3] 3L_7290774_SNP [dm6]	G	T	2.013e^-4	0.976	INTRON unc-13-4A
3R	2727560	3R_2727560_SNP [dm3] 3R_6901838_SNP [dm6]	C	A	2.014e^-4	0.976	INTRON Antp
2R	9247559	2R_9247559_SNP [dm3] 2R_13360054_SNP [dm6]	A	G	2.017e^-4	0.976	INTERGENIC
2L	16987311	2L_16987311_SNP [dm3] 2L_16987311_SNP [dm6]	A	C	2.017e^-4	0.976	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
2L	15363185	2L_15363185_SNP [dm3] 2L_15363185_SNP [dm6]	G	T	2.025e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9336947	3L_9336947_SNP [dm3] 3L_9343847_SNP [dm6]	C	T	2.028e^-4	0.976	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	8192453	2L_8192453_SNP [dm3] 2L_8192453_SNP [dm6]	A	G	2.035e^-4	0.976	INTRON CG8475	TF binding site mE1_TFBS_cad
2L	13932061	2L_13932061_SNP [dm3] 2L_13932061_SNP [dm6]	C	G	2.035e^-4	0.976	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	18793607	3R_18793607_DEL [dm3] 3R_22967885_DEL [dm6]	ATTCGGCGGTAATTAGA...	A	2.045e^-4	0.976	DOWNSTREAM Tpl94D INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16828580	X_16828580_SNP [dm3] X_16934547_SNP [dm6]	A	T	2.045e^-4	0.976	INTRON CG4928	TF binding site mE1_TFBS_chinmo
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	2.047e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	2823489	2R_2823489_SNP [dm3] 2R_6935984_SNP [dm6]	A	G	2.048e^-4	0.976	SYNONYMOUS_CODING mim	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21380818	X_21380818_SNP [dm3] X_21509791_SNP [dm6]	G	A	2.050e^-4	0.976	INTRON CR45082
X	12639784	X_12639784_SNP [dm3] X_12745751_SNP [dm6]	A	T	2.052e^-4	0.976	NON_SYNONYMOUS_CODING CG4004 UPSTREAM CG4004 INTRON CG4004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16528999	3R_16528999_SNP [dm3] 3R_20703277_SNP [dm6]	T	C	2.057e^-4	0.976	INTRON Oamb
2L	12498132	2L_12498132_SNP [dm3] 2L_12498132_SNP [dm6]	A	C	2.068e^-4	0.976	UPSTREAM t-cup INTRON bun
2R	19905679	2R_19905679_SNP [dm3] 2R_24018156_SNP [dm6]	C	A	2.081e^-4	0.976	SYNONYMOUS_CODING CG3121 UPSTREAM CG4324	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	12054321	X_12054321_SNP [dm3] X_12160288_SNP [dm6]	C	T	2.083e^-4	0.976	INTRON Ten-a
2L	17958369	2L_17958369_SNP [dm3] 2L_17958369_SNP [dm6]	C	A	2.088e^-4	0.976	INTERGENIC
3L	12431406	3L_12431406_SNP [dm3] 3L_12438306_SNP [dm6]	C	A	2.089e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5327119	X_5327119_SNP [dm3] X_5433086_SNP [dm6]	G	T	2.094e^-4	0.976	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14440127	3R_14440127_SNP [dm3] 3R_18614405_SNP [dm6]	A	T	2.105e^-4	0.976	INTRON qin & 1 other
2L	15363269	2L_15363269_SNP [dm3] 2L_15363269_SNP [dm6]	T	C	2.106e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24777780	3R_24777780_SNP [dm3] 3R_28952058_SNP [dm6]	C	A	2.114e^-4	0.976	INTRON CG14521
2R	10265199	2R_10265199_SNP [dm3] 2R_14377694_SNP [dm6]	A	C	2.118e^-4	0.976	UPSTREAM Dh44-R1 INTERGENIC
3L	15877113	3L_15877113_SNP [dm3] 3L_15884013_SNP [dm6]	A	G	2.119e^-4	0.976	DOWNSTREAM CR44050 INTRON pHCl
X	13333484	X_13333484_SNP [dm3] X_13439451_SNP [dm6]	A	G	2.121e^-4	0.976	INTERGENIC
X	9833711	X_9833711_SNP [dm3] X_9939678_SNP [dm6]	A	C	2.130e^-4	0.976	INTERGENIC
2L	4326011	2L_4326011_SNP [dm3] 2L_4326011_SNP [dm6]	A	G	2.130e^-4	0.976	INTRON CG16857
3R	10763108	3R_10763108_DEL [dm3] 3R_14937386_DEL [dm6]	CC	C	2.133e^-4	0.976	INTERGENIC
2L	2488101	2L_2488101_SNP [dm3] 2L_2488101_SNP [dm6]	C	T	2.140e^-4	0.976	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
3R	1910411	3R_1910411_INS [dm3] 3R_6084689_INS [dm6]	T	TTA	2.146e^-4	0.976	INTERGENIC
2L	13307894	2L_13307894_SNP [dm3] 2L_13307894_SNP [dm6]	T	G	2.152e^-4	0.976	UTR_3_PRIME CG43778 DOWNSTREAM CG16825 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7490357	2L_7490357_SNP [dm3] 2L_7490357_SNP [dm6]	A	G	2.154e^-4	0.976	INTRON Ziz
3R	7223298	3R_7223298_SNP [dm3] 3R_11397576_SNP [dm6]	A	G	2.162e^-4	0.976	UTR_3_PRIME pros
2L	15337302	2L_15337302_SNP [dm3] 2L_15337302_SNP [dm6]	G	C	2.163e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15337447	2L_15337447_SNP [dm3] 2L_15337447_SNP [dm6]	C	A	2.163e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	505585	3L_505585_SNP [dm3] 3L_505585_SNP [dm6]	C	A	2.167e^-4	0.976	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	17935464	2L_17935464_DEL [dm3] 2L_17935464_DEL [dm6]	CAGCTCTCTGTTGC...	C	2.173e^-4	0.976	INTERGENIC
2R	16013051	2R_16013051_SNP [dm3] 2R_20125546_SNP [dm6]	C	A	2.174e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
3R	25606079	3R_25606079_SNP [dm3] 3R_29780357_SNP [dm6]	T	C	2.176e^-4	0.976	UTR_5_PRIME fig INTRON kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17958346	2L_17958346_SNP [dm3] 2L_17958346_SNP [dm6]	A	C	2.176e^-4	0.976	INTERGENIC
3L	10703423	3L_10703423_SNP [dm3] 3L_10710323_SNP [dm6]	G	A	2.180e^-4	0.976	INTERGENIC
2L	17865083	2L_17865083_SNP [dm3] 2L_17865083_SNP [dm6]	A	C	2.189e^-4	0.976	INTRON CadN2
2R	3476672	2R_3476672_SNP [dm3] 2R_7589167_SNP [dm6]	A	G	2.198e^-4	0.976	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	14207320	2L_14207320_SNP [dm3] 2L_14207320_SNP [dm6]	G	A	2.215e^-4	0.976	INTRON Dyrk2
3L	21346070	3L_21346070_SNP [dm3] 3L_21352970_SNP [dm6]	C	T	2.215e^-4	0.976	SYNONYMOUS_CODING CG32436
3L	10534952	3L_10534952_INS [dm3] 3L_10541852_INS [dm6]	A	ACATA	2.223e^-4	0.976	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi
3L	12411612	3L_12411612_SNP [dm3] 3L_12418512_SNP [dm6]	A	T	2.227e^-4	0.976	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	10185979	X_10185979_SNP [dm3] X_10291946_SNP [dm6]	T	G	2.232e^-4	0.976	INTRON alpha-Man-I
2R	9115704	2R_9115704_SNP [dm3] 2R_13228199_SNP [dm6]	A	C	2.236e^-4	0.976	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
X	18721324	X_18721324_SNP [dm3] X_18827291_SNP [dm6]	G	A	2.242e^-4	0.976	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3R	11693564	3R_11693564_SNP [dm3] 3R_15867842_SNP [dm6]	A	G	2.242e^-4	0.976	INTRON CG31183
2L	15352006	2L_15352006_DEL [dm3] 2L_15352006_DEL [dm6]	GAAGAATTTTGATTTAAGAG...	G	2.243e^-4	0.976	INTERGENIC
2L	14432023	2L_14432023_SNP [dm3] 2L_14432023_SNP [dm6]	T	A	2.246e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	5797495	2R_5797495_SNP [dm3] 2R_9909990_SNP [dm6]	G	A	2.259e^-4	0.976	SYNONYMOUS_CODING FMRFa UPSTREAM Etf-QO	TF binding site mE1_TFBS_chinmo
2R	15228235	2R_15228235_SNP [dm3] 2R_19340730_SNP [dm6]	G	C	2.262e^-4	0.976	INTRON Rgk1
3R	21961529	3R_21961529_SNP [dm3] 3R_26135807_SNP [dm6]	T	C	2.267e^-4	0.976	SYNONYMOUS_CODING CG6142	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26940100	3R_26940100_SNP [dm3] 3R_31114378_SNP [dm6]	T	C	2.270e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
3L	15818261	3L_15818261_SNP [dm3] 3L_15825161_SNP [dm6]	G	A	2.281e^-4	0.976	UPSTREAM Dcp2 INTRON Dcp2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14642843	2R_14642843_SNP [dm3] 2R_18755338_SNP [dm6]	A	G	2.290e^-4	0.976	SYNONYMOUS_CODING Cyp12b2 DOWNSTREAM Hs3st-A
3L	4669274	3L_4669274_SNP [dm3] 3L_4669274_SNP [dm6]	G	A	2.296e^-4	0.976	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5098408	3L_5098408_INS [dm3] 3L_5098408_INS [dm6]	C	CC	2.306e^-4	0.976	EXON CR34047
3L	7326123	3L_7326123_SNP [dm3] 3L_7333023_SNP [dm6]	A	G	2.312e^-4	0.976	SYNONYMOUS_CODING mus312 UTR_3_PRIME mus312 & 1 other DOWNSTREAM CG43780 & 1 other	TF binding site mE1_TFBS_sens
2R	9251317	2R_9251317_SNP [dm3] 2R_13363812_SNP [dm6]	G	A	2.320e^-4	0.976	UPSTREAM CR45312 INTERGENIC
3L	9340505	3L_9340505_SNP [dm3] 3L_9347405_SNP [dm6]	T	C	2.329e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	17876486	2L_17876486_SNP [dm3] 2L_17876486_SNP [dm6]	T	C	2.333e^-4	0.976	INTERGENIC
X	14222878	X_14222878_SNP [dm3] X_14328845_SNP [dm6]	A	T	2.354e^-4	0.976	INTRON dpr8
3R	10199045	3R_10199045_SNP [dm3] 3R_14373323_SNP [dm6]	A	G	2.368e^-4	0.976	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	12628819	3R_12628819_SNP [dm3] 3R_16803097_SNP [dm6]	T	C	2.371e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1136992	3L_1136992_SNP [dm3] 3L_1136992_SNP [dm6]	T	A	2.379e^-4	0.976	INTERGENIC
2R	5796778	2R_5796778_SNP [dm3] 2R_9909273_SNP [dm6]	C	T	2.387e^-4	0.976	SYNONYMOUS_CODING FMRFa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17061756	2R_17061756_SNP [dm3] 2R_21174251_SNP [dm6]	A	G	2.388e^-4	0.976	UTR_3_PRIME Xpd	TF binding site mE1_TFBS_cad
2L	22020649	2L_22020649_SNP [dm3] 2L_22020649_SNP [dm6]	T	G	2.394e^-4	0.976	DOWNSTREAM CR33987 INTRON tio	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17908787	X_17908787_SNP [dm3] X_18014754_SNP [dm6]	G	A	2.398e^-4	0.976	UPSTREAM Sh INTRON Sh
2L	12498134	2L_12498134_SNP [dm3] 2L_12498134_SNP [dm6]	A	G	2.400e^-4	0.976	UPSTREAM t-cup INTRON bun
2L	1591961	2L_1591961_SNP [dm3] 2L_1591961_SNP [dm6]	G	A	2.405e^-4	0.976	INTRON haf
2L	3283559	2L_3283559_SNP [dm3] 2L_3283559_SNP [dm6]	G	A	2.409e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17865047	2L_17865047_SNP [dm3] 2L_17865047_SNP [dm6]	G	A	2.410e^-4	0.976	INTRON CadN2
3R	26090608	3R_26090608_SNP [dm3] 3R_30264886_SNP [dm6]	C	T	2.414e^-4	0.976	INTERGENIC	silencer mE1_HDAC_PRE
3R	11716960	3R_11716960_SNP [dm3] 3R_15891238_SNP [dm6]	A	C	2.425e^-4	0.976	INTRON CG14877
2L	19107402	2L_19107402_INS [dm3] 2L_19107402_INS [dm6]	T	TT	2.426e^-4	0.976	UTR_5_PRIME Lim3 INTRON Lim3
2L	174200	2L_174200_SNP [dm3] 2L_174200_SNP [dm6]	G	A	2.428e^-4	0.976	INTRON spen
2R	16498085	2R_16498085_SNP [dm3] 2R_20610580_SNP [dm6]	G	A	2.428e^-4	0.976	INTRON Hil
2L	21926543	2L_21926543_SNP [dm3] 2L_21926543_SNP [dm6]	G	A	2.430e^-4	0.976	INTERGENIC
3L	11699295	3L_11699295_SNP [dm3] 3L_11706195_SNP [dm6]	A	C	2.435e^-4	0.976	INTRON CG11658
3L	21767823	3L_21767823_SNP [dm3] 3L_21774723_SNP [dm6]	T	A	2.436e^-4	0.976	UPSTREAM CG42552 INTRON CG42689
2L	4342070	2L_4342070_SNP [dm3] 2L_4342070_SNP [dm6]	T	C	2.441e^-4	0.976	SYNONYMOUS_CODING Atet
3R	14677020	3R_14677020_SNP [dm3] 3R_18851298_SNP [dm6]	T	C	2.445e^-4	0.976	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
2L	7490346	2L_7490346_SNP [dm3] 2L_7490346_SNP [dm6]	C	T	2.447e^-4	0.976	INTRON Ziz
3L	15877374	3L_15877374_DEL [dm3] 3L_15884274_DEL [dm6]	ATATT	A	2.450e^-4	0.976	DOWNSTREAM CR44050 INTRON pHCl
2L	9725791	2L_9725791_SNP [dm3] 2L_9725791_SNP [dm6]	G	T	2.454e^-4	0.976	INTRON Nckx30C
2L	15806869	2L_15806869_SNP [dm3] 2L_15806869_SNP [dm6]	T	C	2.469e^-4	0.976	DOWNSTREAM CR44602 INTERGENIC
3R	12243811	3R_12243811_SNP [dm3] 3R_16418089_SNP [dm6]	A	T	2.478e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	6254565	3L_6254565_SNP [dm3] 3L_6261465_SNP [dm6]	C	G	2.479e^-4	0.976	UPSTREAM ImpL3 INTRON ImpL3
X	8166551	X_8166551_SNP [dm3] X_8272518_SNP [dm6]	T	C	2.482e^-4	0.976	NON_SYNONYMOUS_CODING CG15343 UPSTREAM CG1636 DOWNSTREAM CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	316528	2L_316528_SNP [dm3] 2L_316528_SNP [dm6]	G	T	2.483e^-4	0.976	INTRON Plc21C
2R	20443466	2R_20443466_SNP [dm3] 2R_24555943_SNP [dm6]	C	T	2.492e^-4	0.976	SPLICE_SITE_REGION CG4622 UTR_5_PRIME CG4622 INTRON ITP
2L	17855549	2L_17855549_DEL [dm3] 2L_17855549_DEL [dm6]	ATGAGTGAGTGCGTTAATAT...	A	2.502e^-4	0.976	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8789954	X_8789954_SNP [dm3] X_8895921_SNP [dm6]	C	T	2.504e^-4	0.976	INTRON Moe	TF binding site BDTNP1_TFBS_dl
3R	2734884	3R_2734884_SNP [dm3] 3R_6909162_SNP [dm6]	T	C	2.507e^-4	0.976	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13850445	3R_13850445_SNP [dm3] 3R_18024723_SNP [dm6]	C	A	2.512e^-4	0.976	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
2R	9115705	2R_9115705_SNP [dm3] 2R_13228200_SNP [dm6]	G	T	2.519e^-4	0.976	UTR_3_PRIME Dp DOWNSTREAM Pex13 & 1 other
3R	15673811	3R_15673811_SNP [dm3] 3R_19848089_SNP [dm6]	A	G	2.531e^-4	0.976	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	9389774	2L_9389774_SNP [dm3] 2L_9389774_SNP [dm6]	A	C	2.534e^-4	0.976	INTRON Shawl & 1 other
X	11560584	X_11560584_SNP [dm3] X_11666551_SNP [dm6]	T	A	2.541e^-4	0.976	INTRON Ptp10D
3R	26062041	3R_26062041_SNP [dm3] 3R_30236319_SNP [dm6]	A	T	2.555e^-4	0.976	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7286655	2R_7286655_SNP [dm3] 2R_11399150_SNP [dm6]	T	C	2.557e^-4	0.976	DOWNSTREAM tRNA:CR30506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14611051	3R_14611051_SNP [dm3] 3R_18785329_SNP [dm6]	C	T	2.560e^-4	0.976	INTRON CG7720
X	14223975	X_14223975_SNP [dm3] X_14329942_SNP [dm6]	A	T	2.566e^-4	0.976	INTRON dpr8
X	5237966	X_5237966_SNP [dm3] X_5343933_SNP [dm6]	T	C	2.569e^-4	0.976	INTRON SK
3R	17365837	3R_17365837_SNP [dm3] 3R_21540115_SNP [dm6]	T	C	2.583e^-4	0.976	INTERGENIC
3L	5690147	3L_5690147_SNP [dm3] 3L_5697047_SNP [dm6]	C	G	2.587e^-4	0.976	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15823239	3L_15823239_SNP [dm3] 3L_15830139_SNP [dm6]	C	A	2.587e^-4	0.976	SYNONYMOUS_CODING dbo
2R	7795904	2R_7795904_SNP [dm3] 2R_11908399_SNP [dm6]	C	G	2.597e^-4	0.976	INTRON CG13183
2R	14274512	2R_14274512_SNP [dm3] 2R_18387007_SNP [dm6]	T	G	2.598e^-4	0.976	UTR_3_PRIME IM2 UPSTREAM IM3
2L	2488098	2L_2488098_SNP [dm3] 2L_2488098_SNP [dm6]	G	T	2.602e^-4	0.976	DOWNSTREAM Slh INTERGENIC	enhancer FlyBase
2R	9137091	2R_9137091_SNP [dm3] 2R_13249586_SNP [dm6]	G	C	2.604e^-4	0.976	DOWNSTREAM Mp20 INTRON CG4712
2L	7500401	2L_7500401_SNP [dm3] 2L_7500401_SNP [dm6]	A	G	2.605e^-4	0.976	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21060741	2L_21060741_SNP [dm3] 2L_21060741_SNP [dm6]	C	T	2.608e^-4	0.976	INTRON CG9265
3L	16852036	3L_16852036_SNP [dm3] 3L_16858936_SNP [dm6]	G	T	2.621e^-4	0.976	UPSTREAM sinah DOWNSTREAM sina INTRON Rh4
3L	1090241	3L_1090241_SNP [dm3] 3L_1090241_SNP [dm6]	A	C	2.623e^-4	0.976	INTRON bab1	regulatory region REDfly_CRMs
3R	14311182	3R_14311182_SNP [dm3] 3R_18485460_SNP [dm6]	A	T	2.624e^-4	0.976	INTRON fru
2L	15494326	2L_15494326_SNP [dm3] 2L_15494326_SNP [dm6]	T	A	2.624e^-4	0.976	INTERGENIC
3L	6068967	3L_6068967_SNP [dm3] 3L_6075867_SNP [dm6]	G	A	2.627e^-4	0.976	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6068265	3L_6068265_SNP [dm3] 3L_6075165_SNP [dm6]	G	A	2.630e^-4	0.976	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16413303	2L_16413303_SNP [dm3] 2L_16413303_SNP [dm6]	A	C	2.630e^-4	0.976	INTRON CG5888
3R	18793257	3R_18793257_SNP [dm3] 3R_22967535_SNP [dm6]	C	A	2.632e^-4	0.976	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
X	5447460	X_5447460_SNP [dm3] X_5553427_SNP [dm6]	T	G	2.645e^-4	0.976	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
2R	19828103	2R_19828103_SNP [dm3] 2R_23940580_SNP [dm6]	T	G	2.652e^-4	0.976	UPSTREAM CG3735 INTRON Tal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8132421	2R_8132421_DEL [dm3] 2R_12244916_DEL [dm6]	GA	C	2.654e^-4	0.976	UPSTREAM CG43244 INTERGENIC
X	6285366	X_6285366_SNP [dm3] X_6391333_SNP [dm6]	G	A	2.664e^-4	0.976	INTERGENIC
2L	7489623	2L_7489623_SNP [dm3] 2L_7489623_SNP [dm6]	T	A	2.664e^-4	0.976	INTRON Ziz
3R	26075388	3R_26075388_SNP [dm3] 3R_30249666_SNP [dm6]	A	T	2.666e^-4	0.976	NON_SYNONYMOUS_CODING CG34299 UPSTREAM tRNA:CR31023	TF binding site mE1_TFBS_inv
2L	132312	2L_132312_SNP [dm3] 2L_132312_SNP [dm6]	T	G	2.674e^-4	0.976	UTR_5_PRIME Gs1 INTRON CG11455 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7357546	2L_7357546_DEL [dm3] 2L_7357546_DEL [dm6]	ATA	A	2.676e^-4	0.976	INTERGENIC
2L	6205857	2L_6205857_SNP [dm3] 2L_6205857_SNP [dm6]	G	A	2.682e^-4	0.976	INTRON CG34380	TF binding site BDTNP1_TFBS_da
2L	12703970	2L_12703970_SNP [dm3] 2L_12703970_SNP [dm6]	T	G	2.689e^-4	0.976	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
2R	20259856	2R_20259856_SNP [dm3] 2R_24372333_SNP [dm6]	G	A	2.691e^-4	0.976	INTRON bs
2R	14148581	2R_14148581_SNP [dm3] 2R_18261076_SNP [dm6]	C	T	2.698e^-4	0.976	INTERGENIC
2R	12966453	2R_12966453_SNP [dm3] 2R_17078948_SNP [dm6]	A	C	2.701e^-4	0.976	INTRON CG30460
X	13874537	X_13874537_SNP [dm3] X_13980504_SNP [dm6]	A	G	2.704e^-4	0.976	INTRON mamo
3L	9340486	3L_9340486_SNP [dm3] 3L_9347386_SNP [dm6]	A	G	2.708e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
X	10272520	X_10272520_SNP [dm3] X_10378487_SNP [dm6]	T	C	2.709e^-4	0.976	NON_SYNONYMOUS_CODING CG32681 INTRON CG17841
X	5237938	X_5237938_INS [dm3] X_5343905_INS [dm6]	C	CATAC	2.710e^-4	0.976	INTRON SK
3L	6531947	3L_6531947_SNP [dm3] 3L_6538847_SNP [dm6]	G	T	2.710e^-4	0.976	INTRON sfl
2R	5795876	2R_5795876_SNP [dm3] 2R_9908371_SNP [dm6]	G	T	2.712e^-4	0.976	INTRON FMRFa
2L	7133498	2L_7133498_SNP [dm3] 2L_7133498_SNP [dm6]	C	A	2.715e^-4	0.976	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18604798	2L_18604798_SNP [dm3] 2L_18604798_SNP [dm6]	G	T	2.719e^-4	0.976	SYNONYMOUS_CODING CG10413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16097029	X_16097029_SNP [dm3] X_16202996_SNP [dm6]	C	G	2.737e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2L	6571783	2L_6571783_SNP [dm3] 2L_6571783_SNP [dm6]	A	C	2.739e^-4	0.976	UTR_3_PRIME CG11319 DOWNSTREAM CG11319 INTRON CG11319
2R	14274614	2R_14274614_SNP [dm3] 2R_18387109_SNP [dm6]	G	A	2.741e^-4	0.976	UPSTREAM IM3 DOWNSTREAM IM2 INTERGENIC
2L	15806855	2L_15806855_SNP [dm3] 2L_15806855_SNP [dm6]	T	C	2.749e^-4	0.976	DOWNSTREAM CR44602 INTERGENIC
3R	12631658	3R_12631658_SNP [dm3] 3R_16805936_SNP [dm6]	A	G	2.772e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12649395	2L_12649395_SNP [dm3] 2L_12649395_SNP [dm6]	G	T	2.774e^-4	0.976	INTERGENIC
2R	2968095	2R_2968095_SNP [dm3] 2R_7080590_SNP [dm6]	A	G	2.780e^-4	0.976	INTERGENIC
2R	14148019	2R_14148019_SNP [dm3] 2R_18260514_SNP [dm6]	G	A	2.788e^-4	0.976	INTERGENIC
X	20554931	X_20554931_DEL [dm3] X_20683904_DEL [dm6]	CTTAGA	T	2.791e^-4	0.976	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	8180029	2R_8180029_SNP [dm3] 2R_12292524_SNP [dm6]	G	A	2.802e^-4	0.976	INTRON CG42700
3R	13310088	3R_13310088_SNP [dm3] 3R_17484366_SNP [dm6]	G	A	2.807e^-4	0.976	SYNONYMOUS_CODING Dscam3
3R	12243808	3R_12243808_SNP [dm3] 3R_16418086_SNP [dm6]	G	A	2.807e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	3423124	3L_3423124_SNP [dm3] 3L_3423124_SNP [dm6]	A	T	2.809e^-4	0.976	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	10680065	3R_10680065_SNP [dm3] 3R_14854343_SNP [dm6]	A	G	2.823e^-4	0.976	UPSTREAM btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	26871116	3R_26871116_SNP [dm3] 3R_31045394_SNP [dm6]	G	A	2.824e^-4	0.976	UPSTREAM CG33920 INTRON CanA1
3L	4483562	3L_4483562_SNP [dm3] 3L_4483562_SNP [dm6]	G	T	2.829e^-4	0.976	SYNONYMOUS_CODING CG11350
2L	12498119	2L_12498119_SNP [dm3] 2L_12498119_SNP [dm6]	C	A	2.836e^-4	0.976	UPSTREAM t-cup INTRON bun
3R	15755513	3R_15755513_SNP [dm3] 3R_19929791_SNP [dm6]	A	G	2.839e^-4	0.976	UTR_3_PRIME Hs6st	TF binding site BDTNP1_TFBS_dl
X	10185991	X_10185991_SNP [dm3] X_10291958_SNP [dm6]	T	G	2.844e^-4	0.976	INTRON alpha-Man-I
3R	20017162	3R_20017162_SNP [dm3] 3R_24191440_SNP [dm6]	T	C	2.846e^-4	0.976	NON_SYNONYMOUS_CODING jnj
2L	15363184	2L_15363184_SNP [dm3] 2L_15363184_SNP [dm6]	T	G	2.858e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	11349981	X_11349981_SNP [dm3] X_11455948_SNP [dm6]	C	A	2.862e^-4	0.976	NON_SYNONYMOUS_CODING HP5	TF binding site mE1_TFBS_sens
2R	7554314	2R_7554314_SNP [dm3] 2R_11666809_SNP [dm6]	C	T	2.865e^-4	0.976	INTRON Roc2 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	3741252	X_3741252_SNP [dm3] X_3847219_SNP [dm6]	T	A	2.867e^-4	0.976	INTRON ec	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3L	10230392	3L_10230392_SNP [dm3] 3L_10237292_SNP [dm6]	C	T	2.871e^-4	0.976	DOWNSTREAM CR44542 INTERGENIC
3R	2528684	3R_2528684_SNP [dm3] 3R_6702962_SNP [dm6]	T	C	2.871e^-4	0.976	UPSTREAM Ccp84Ab INTERGENIC
3R	5388665	3R_5388665_SNP [dm3] 3R_9562943_SNP [dm6]	G	A	2.874e^-4	0.976	SYNONYMOUS_CODING CG9393 UPSTREAM Vps45
2R	440468	2R_440468_INS [dm3] 2R_4552963_INS [dm6]	G	GG	2.877e^-4	0.976	INTRON Stlk	transposable element FlyBase
3R	16214960	3R_16214960_SNP [dm3] 3R_20389238_SNP [dm6]	A	G	2.885e^-4	0.976	INTRON Gfrl
2L	17962697	2L_17962697_SNP [dm3] 2L_17962697_SNP [dm6]	T	C	2.895e^-4	0.976	UTR_3_PRIME btv UPSTREAM CG5674	TF binding site mE1_TFBS_bab1 mE1_TFBS_sbb
3R	19618795	3R_19618795_SNP [dm3] 3R_23793073_SNP [dm6]	T	C	2.897e^-4	0.976	SYNONYMOUS_CODING mbc
3R	18196157	3R_18196157_SNP [dm3] 3R_22370435_SNP [dm6]	G	T	2.897e^-4	0.976	INTRON PyK
3R	20016975	3R_20016975_SNP [dm3] 3R_24191253_SNP [dm6]	C	A	2.897e^-4	0.976	SYNONYMOUS_CODING jnj
2R	8639658	2R_8639658_SNP [dm3] 2R_12752153_SNP [dm6]	A	G	2.897e^-4	0.976	SYNONYMOUS_CODING mos DOWNSTREAM CG42663 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6539113	2L_6539113_SNP [dm3] 2L_6539113_SNP [dm6]	A	C	2.901e^-4	0.976	INTRON eya
X	18721434	X_18721434_SNP [dm3] X_18827401_SNP [dm6]	G	A	2.913e^-4	0.976	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3R	12630657	3R_12630657_SNP [dm3] 3R_16804935_SNP [dm6]	C	T	2.913e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5795920	2R_5795920_SNP [dm3] 2R_9908415_SNP [dm6]	G	A	2.921e^-4	0.976	INTRON FMRFa
2R	3902264	2R_3902264_SNP [dm3] 2R_8014759_SNP [dm6]	T	C	2.931e^-4	0.976	UPSTREAM mir-4981 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	20146604	2L_20146604_SNP [dm3] 2L_20146604_SNP [dm6]	G	A	2.940e^-4	0.976	INTERGENIC
3L	8548947	3L_8548947_DEL [dm3] 3L_8555847_DEL [dm6]	ACA	A	2.943e^-4	0.976	UTR_5_PRIME rhea
3L	15899276	3L_15899276_SNP [dm3] 3L_15906176_SNP [dm6]	C	G	2.946e^-4	0.976	SYNONYMOUS_CODING sff
3L	12233188	3L_12233188_MNP [dm3] 3L_12240088_MNP [dm6]	CAA	TTT	2.950e^-4	0.976	INTRON app
2R	20434909	2R_20434909_SNP [dm3] 2R_24547386_SNP [dm6]	G	T	2.953e^-4	0.976	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5350547	X_5350547_SNP [dm3] X_5456514_SNP [dm6]	T	C	2.957e^-4	0.976	INTRON SPR
3L	9044524	3L_9044524_SNP [dm3] 3L_9051424_SNP [dm6]	T	C	2.968e^-4	0.976	UTR_5_PRIME Argk INTRON Argk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3495904	3L_3495904_SNP [dm3] 3L_3495904_SNP [dm6]	C	T	2.968e^-4	0.976	INTRON CG42324
X	16788364	X_16788364_SNP [dm3] X_16894331_SNP [dm6]	G	A	2.969e^-4	0.976	INTERGENIC
3L	11466332	3L_11466332_SNP [dm3] 3L_11473232_SNP [dm6]	C	T	2.978e^-4	0.976	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22294793	3R_22294793_SNP [dm3] 3R_26469071_SNP [dm6]	A	G	2.981e^-4	0.976	INTRON CG5455
3L	9340483	3L_9340483_SNP [dm3] 3L_9347383_SNP [dm6]	T	C	2.981e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	14418568	2L_14418568_SNP [dm3] 2L_14418568_SNP [dm6]	A	C	2.982e^-4	0.976	INTERGENIC
2L	7554499	2L_7554499_SNP [dm3] 2L_7554499_SNP [dm6]	T	C	2.983e^-4	0.976	INTRON RapGAP1
2L	16987316	2L_16987316_SNP [dm3] 2L_16987316_SNP [dm6]	G	C	3.000e^-4	0.976	INTRON beat-IIIb	TF binding site mE1_TFBS_HSA
2L	19019177	2L_19019177_SNP [dm3] 2L_19019177_SNP [dm6]	T	G	3.002e^-4	0.976	DOWNSTREAM CR44184 INTERGENIC
3L	3142165	3L_3142165_SNP [dm3] 3L_3142165_SNP [dm6]	G	A	3.004e^-4	0.976	INTRON CG11537	TF binding site mE1_TFBS_HSA
2R	6084691	2R_6084691_SNP [dm3] 2R_10197186_SNP [dm6]	G	T	3.026e^-4	0.976	UTR_3_PRIME CG34221 DOWNSTREAM CG34221	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11330484	3L_11330484_SNP [dm3] 3L_11337384_SNP [dm6]	G	A	3.029e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_sens
2L	22197609	2L_22197609_SNP [dm3] 2L_22197609_SNP [dm6]	A	G	3.034e^-4	0.976	INTRON Ir40a
X	4859846	X_4859846_SNP [dm3] X_4965813_SNP [dm6]	A	C	3.052e^-4	0.976	INTRON CR44833	regulatory region REDfly_CRMs
2L	13184712	2L_13184712_SNP [dm3] 2L_13184712_SNP [dm6]	G	A	3.054e^-4	0.976	SYNONYMOUS_CODING CG5458 UTR_3_PRIME CG16974 DOWNSTREAM CG16974	TF binding site mE1_TFBS_cad
X	15327497	X_15327497_INS [dm3] X_15433464_INS [dm6]	T	TGCTGCGTCTATGT...	3.057e^-4	0.976	INTRON Cngl	transposable element FlyBase
2L	9950103	2L_9950103_SNP [dm3] 2L_9950103_SNP [dm6]	C	T	3.066e^-4	0.976	DOWNSTREAM mir-87 INTERGENIC
3R	18797809	3R_18797809_SNP [dm3] 3R_22972087_SNP [dm6]	C	T	3.067e^-4	0.976	INTERGENIC
2L	1611193	2L_1611193_SNP [dm3] 2L_1611193_SNP [dm6]	G	A	3.072e^-4	0.976	UPSTREAM CG14352 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15327382	X_15327382_DEL [dm3] X_15433349_DEL [dm6]	TATCAATC	T	3.083e^-4	0.976	INTRON Cngl	transposable element FlyBase
2L	16821746	2L_16821746_SNP [dm3] 2L_16821746_SNP [dm6]	T	C	3.095e^-4	0.976	NON_SYNONYMOUS_CODING Cas UPSTREAM CG13280 INTRON mdy
3R	15674219	3R_15674219_SNP [dm3] 3R_19848497_SNP [dm6]	C	T	3.102e^-4	0.976	INTRON CG4662	TF binding site BDTNP1_TFBS_dl
3L	2749119	3L_2749119_SNP [dm3] 3L_2749119_SNP [dm6]	A	T	3.116e^-4	0.976	INTRON Mrtf
2L	15363051	2L_15363051_SNP [dm3] 2L_15363051_SNP [dm6]	A	C	3.118e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7530192	X_7530192_SNP [dm3] X_7636159_SNP [dm6]	C	G	3.127e^-4	0.976	INTRON ct
2L	9390845	2L_9390845_SNP [dm3] 2L_9390845_SNP [dm6]	A	G	3.129e^-4	0.976	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
3L	2834651	3L_2834651_SNP [dm3] 3L_2834651_SNP [dm6]	G	C	3.132e^-4	0.976	INTRON CG43444
2L	9403338	2L_9403338_SNP [dm3] 2L_9403338_SNP [dm6]	G	C	3.138e^-4	0.976	INTRON Shawl
2R	9115116	2R_9115116_SNP [dm3] 2R_13227611_SNP [dm6]	T	A	3.140e^-4	0.976	UTR_3_PRIME Dp DOWNSTREAM Pex13
X	14217721	X_14217721_SNP [dm3] X_14323688_SNP [dm6]	T	C	3.144e^-4	0.976	INTRON dpr8
3L	6097510	3L_6097510_SNP [dm3] 3L_6104410_SNP [dm6]	A	G	3.151e^-4	0.976	INTRON Ets65A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19319829	3L_19319829_SNP [dm3] 3L_19326729_SNP [dm6]	A	C	3.163e^-4	0.976	INTRON pip
2L	9473154	2L_9473154_SNP [dm3] 2L_9473154_SNP [dm6]	T	G	3.171e^-4	0.976	INTERGENIC
3L	13071814	3L_13071814_SNP [dm3] 3L_13078714_SNP [dm6]	T	C	3.186e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10579875	X_10579875_SNP [dm3] X_10685842_SNP [dm6]	A	G	3.189e^-4	0.976	INTRON X11Lbeta
3L	7851272	3L_7851272_SNP [dm3] 3L_7858172_SNP [dm6]	A	C	3.192e^-4	0.976	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19995024	2R_19995024_SNP [dm3] 2R_24107501_SNP [dm6]	C	A	3.193e^-4	0.976	UTR_3_PRIME CG4049 DOWNSTREAM enok
3L	15296206	3L_15296206_SNP [dm3] 3L_15303106_SNP [dm6]	G	T	3.195e^-4	0.976	UPSTREAM Best3 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11064936	2L_11064936_SNP [dm3] 2L_11064936_SNP [dm6]	A	G	3.201e^-4	0.976	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16023909	2L_16023909_SNP [dm3] 2L_16023909_SNP [dm6]	T	C	3.204e^-4	0.976	INTRON beat-Ic
2L	19232901	2L_19232901_SNP [dm3] 2L_19232901_SNP [dm6]	G	A	3.204e^-4	0.976	INTERGENIC
2L	12499318	2L_12499318_SNP [dm3] 2L_12499318_SNP [dm6]	A	T	3.217e^-4	0.976	INTRON bun
2R	6170280	2R_6170280_SNP [dm3] 2R_10282775_SNP [dm6]	T	C	3.225e^-4	0.976	SYNONYMOUS_CODING CAP INTRON CAP	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26870778	3R_26870778_SNP [dm3] 3R_31045056_SNP [dm6]	G	A	3.231e^-4	0.976	NON_SYNONYMOUS_CODING CG33920 INTRON CanA1
3L	6543510	3L_6543510_SNP [dm3] 3L_6550410_SNP [dm6]	T	A	3.233e^-4	0.976	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	20684698	3R_20684698_SNP [dm3] 3R_24858976_SNP [dm6]	T	A	3.238e^-4	0.976	DOWNSTREAM ppk22 & 1 other INTRON ppk22
3L	4483559	3L_4483559_SNP [dm3] 3L_4483559_SNP [dm6]	C	T	3.247e^-4	0.976	SYNONYMOUS_CODING CG11350
X	10020452	X_10020452_SNP [dm3] X_10126419_SNP [dm6]	T	C	3.252e^-4	0.976	INTRON CR44894 & 1 other
3L	16204363	3L_16204363_SNP [dm3] 3L_16211263_SNP [dm6]	G	T	3.255e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	22145885	3L_22145885_SNP [dm3] 3L_22152785_SNP [dm6]	A	G	3.283e^-4	0.976	INTRON olf413
2L	7489627	2L_7489627_SNP [dm3] 2L_7489627_SNP [dm6]	A	C	3.285e^-4	0.976	INTRON Ziz
3L	8615659	3L_8615659_SNP [dm3] 3L_8622559_SNP [dm6]	G	A	3.293e^-4	0.976	SYNONYMOUS_CODING GAPsec DOWNSTREAM S-Lap2
2R	473181	2R_473181_SNP [dm3] 2R_4585676_SNP [dm6]	A	C	3.294e^-4	0.976	INTERGENIC
X	6880226	X_6880226_SNP [dm3] X_6986193_SNP [dm6]	C	A	3.297e^-4	0.976	UPSTREAM bou & 1 other INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	16875882	3L_16875882_SNP [dm3] 3L_16882782_SNP [dm6]	C	T	3.300e^-4	0.976	INTRON Lmpt
3L	16921378	3L_16921378_SNP [dm3] 3L_16928278_SNP [dm6]	T	C	3.302e^-4	0.976	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	3.303e^-4	0.976	INTERGENIC
2R	2796964	2R_2796964_SNP [dm3] 2R_6909459_SNP [dm6]	G	T	3.303e^-4	0.976	INTRON CG30158
2L	132010	2L_132010_SNP [dm3] 2L_132010_SNP [dm6]	A	C	3.304e^-4	0.976	UPSTREAM Gs1 INTRON CG11455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	9967584	2L_9967584_SNP [dm3] 2L_9967584_SNP [dm6]	G	A	3.323e^-4	0.976	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10264871	2R_10264871_SNP [dm3] 2R_14377366_SNP [dm6]	G	A	3.325e^-4	0.976	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3R	2259657	3R_2259657_SNP [dm3] 3R_6433935_SNP [dm6]	G	A	3.327e^-4	0.976	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7488764	2L_7488764_SNP [dm3] 2L_7488764_SNP [dm6]	C	T	3.331e^-4	0.976	INTRON Ziz
3R	18390899	3R_18390899_SNP [dm3] 3R_22565177_SNP [dm6]	T	A	3.333e^-4	0.976	INTERGENIC
2L	12498129	2L_12498129_INS [dm3] 2L_12498129_INS [dm6]	T	TT	3.334e^-4	0.976	UPSTREAM t-cup INTRON bun
3L	22964441	3L_22964441_SNP [dm3] 3L_22971341_SNP [dm6]	G	A	3.337e^-4	0.976	INTERGENIC
3L	506087	3L_506087_SNP [dm3] 3L_506087_SNP [dm6]	G	A	3.337e^-4	0.976	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	26871143	3R_26871143_SNP [dm3] 3R_31045421_SNP [dm6]	C	T	3.350e^-4	0.976	UPSTREAM CG33920 INTRON CanA1
2L	2926666	2L_2926666_SNP [dm3] 2L_2926666_SNP [dm6]	C	T	3.361e^-4	0.976	INTRON lilli
3R	19618891	3R_19618891_SNP [dm3] 3R_23793169_SNP [dm6]	G	A	3.369e^-4	0.976	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_sens
2R	17637264	2R_17637264_SNP [dm3] 2R_21749759_SNP [dm6]	G	T	3.370e^-4	0.976	INTERGENIC
3R	16528700	3R_16528700_SNP [dm3] 3R_20702978_SNP [dm6]	T	A	3.371e^-4	0.976	INTRON Oamb
2L	5943563	2L_5943563_SNP [dm3] 2L_5943563_SNP [dm6]	A	G	3.372e^-4	0.976	UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
2L	17958336	2L_17958336_SNP [dm3] 2L_17958336_SNP [dm6]	T	G	3.392e^-4	0.976	INTERGENIC
2R	8836261	2R_8836261_SNP [dm3] 2R_12948756_SNP [dm6]	G	A	3.402e^-4	0.976	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15671753	2R_15671753_SNP [dm3] 2R_19784248_SNP [dm6]	C	T	3.403e^-4	0.976	UPSTREAM CR45231 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2R	434635	2R_434635_DEL [dm3] 2R_4547130_DEL [dm6]	AGGTTGTTAGATTTTAT...	A	3.404e^-4	0.976	INTRON Stlk	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	16210930	2L_16210930_INS [dm3] 2L_16210930_INS [dm6]	C	CTTGGATGAGACTGGC...	3.411e^-4	0.976	UPSTREAM CG31819 INTERGENIC
3L	7518019	3L_7518019_SNP [dm3] 3L_7524919_SNP [dm6]	C	A	3.417e^-4	0.976	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6079714	2R_6079714_SNP [dm3] 2R_10192209_SNP [dm6]	A	T	3.427e^-4	0.976	UTR_5_PRIME KCNQ	TF binding site mE1_TFBS_inv
2R	5793647	2R_5793647_SNP [dm3] 2R_9906142_SNP [dm6]	A	G	3.430e^-4	0.976	UPSTREAM FMRFa INTERGENIC	TF binding site mE1_TFBS_cnc
3R	14440113	3R_14440113_INS [dm3] 3R_18614391_INS [dm6]	T	TT	3.436e^-4	0.976	INTRON qin & 1 other
3L	15899551	3L_15899551_SNP [dm3] 3L_15906451_SNP [dm6]	T	C	3.446e^-4	0.976	INTRON sff
3R	20017585	3R_20017585_SNP [dm3] 3R_24191863_SNP [dm6]	G	A	3.447e^-4	0.976	NON_SYNONYMOUS_CODING jnj
3R	18797737	3R_18797737_SNP [dm3] 3R_22972015_SNP [dm6]	G	T	3.458e^-4	0.976	INTERGENIC
2L	315905	2L_315905_SNP [dm3] 2L_315905_SNP [dm6]	T	A	3.460e^-4	0.976	INTRON Plc21C
2R	15557383	2R_15557383_SNP [dm3] 2R_19669878_SNP [dm6]	G	A	3.460e^-4	0.976	UPSTREAM hrg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	22027833	3R_22027833_SNP [dm3] 3R_26202111_SNP [dm6]	C	G	3.463e^-4	0.976	INTRON CR44320
3R	18606126	3R_18606126_SNP [dm3] 3R_22780404_SNP [dm6]	C	A	3.470e^-4	0.976	UPSTREAM CR43654 INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	338134	3R_338134_DEL [dm3] 3R_4512412_DEL [dm6]	TGC	T	3.477e^-4	0.976	INTRON CG34357
2R	7043067	2R_7043067_SNP [dm3] 2R_11155562_SNP [dm6]	A	G	3.478e^-4	0.976	DOWNSTREAM CG13230 INTRON CG13229
3L	9340575	3L_9340575_SNP [dm3] 3L_9347475_SNP [dm6]	T	C	3.483e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
2L	2314835	2L_2314835_SNP [dm3] 2L_2314835_SNP [dm6]	G	A	3.492e^-4	0.976	INTRON CG9967 & 1 other
3R	23882014	3R_23882014_SNP [dm3] 3R_28056292_SNP [dm6]	G	C	3.497e^-4	0.976	INTRON CG34362
2L	1591898	2L_1591898_SNP [dm3] 2L_1591898_SNP [dm6]	A	G	3.499e^-4	0.976	INTRON haf
2L	4916296	2L_4916296_SNP [dm3] 2L_4916296_SNP [dm6]	C	A	3.501e^-4	0.976	UPSTREAM hoe1 INTRON hoe1
2L	9173115	2L_9173115_DEL [dm3] 2L_9173115_DEL [dm6]	AA	A	3.502e^-4	0.976	INTRON tai
2L	15807067	2L_15807067_SNP [dm3] 2L_15807067_SNP [dm6]	A	G	3.504e^-4	0.976	DOWNSTREAM CR44602 INTERGENIC
3L	1136985	3L_1136985_MNP [dm3] 3L_1136985_MNP [dm6]	TTT	CAC	3.505e^-4	0.976	INTERGENIC
X	10475756	X_10475756_SNP [dm3] X_10581723_SNP [dm6]	T	C	3.521e^-4	0.976	INTRON spri
X	2214179	X_2214179_SNP [dm3] X_2320146_SNP [dm6]	C	T	3.525e^-4	0.976	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18815037	2L_18815037_SNP [dm3] 2L_18815037_SNP [dm6]	G	T	3.533e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1910416	3R_1910416_SNP [dm3] 3R_6084694_SNP [dm6]	C	T	3.544e^-4	0.976	INTERGENIC
3L	10996371	3L_10996371_SNP [dm3] 3L_11003271_SNP [dm6]	C	G	3.550e^-4	0.976	INTRON klu
2L	1505212	2L_1505212_SNP [dm3] 2L_1505212_SNP [dm6]	T	A	3.560e^-4	0.976	INTERGENIC
X	908571	X_908571_DEL [dm3] X_1014538_DEL [dm6]	GCTATGCAG	G	3.563e^-4	0.976	UTR_3_PRIME CG11638 INTRON su_w[a]_
3L	15395739	3L_15395739_SNP [dm3] 3L_15402639_SNP [dm6]	T	A	3.571e^-4	0.976	INTERGENIC
3L	10803166	3L_10803166_SNP [dm3] 3L_10810066_SNP [dm6]	A	T	3.600e^-4	0.976	INTERGENIC
3L	10230487	3L_10230487_SNP [dm3] 3L_10237387_SNP [dm6]	A	T	3.602e^-4	0.976	DOWNSTREAM CR44542 INTERGENIC
3R	26870543	3R_26870543_SNP [dm3] 3R_31044821_SNP [dm6]	A	T	3.613e^-4	0.976	INTRON CanA1 & 1 other
2L	10811806	2L_10811806_SNP [dm3] 2L_10811806_SNP [dm6]	T	A	3.630e^-4	0.976	INTRON Nos
X	8288266	X_8288266_SNP [dm3] X_8394233_SNP [dm6]	A	C	3.634e^-4	0.976	INTERGENIC
2L	12454619	2L_12454619_SNP [dm3] 2L_12454619_SNP [dm6]	C	G	3.642e^-4	0.976	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
X	2428111	X_2428111_SNP [dm3] X_2534078_SNP [dm6]	T	C	3.646e^-4	0.976	INTRON trol
3L	3920147	3L_3920147_SNP [dm3] 3L_3920147_SNP [dm6]	G	A	3.650e^-4	0.976	INTRON Eip63F-1
3L	9307329	3L_9307329_SNP [dm3] 3L_9314229_SNP [dm6]	G	A	3.655e^-4	0.976	INTERGENIC
2R	16086361	2R_16086361_SNP [dm3] 2R_20198856_SNP [dm6]	C	A	3.656e^-4	0.976	INTERGENIC
2L	10844528	2L_10844528_SNP [dm3] 2L_10844528_SNP [dm6]	C	A	3.660e^-4	0.976	SYNONYMOUS_CODING CG17139 UTR_5_PRIME CG17140 UPSTREAM CG17140
2R	19787719	2R_19787719_SNP [dm3] 2R_23900196_SNP [dm6]	T	C	3.668e^-4	0.976	SYNONYMOUS_CODING Lpt	TF binding site mE1_TFBS_chinmo
2L	7133456	2L_7133456_SNP [dm3] 2L_7133456_SNP [dm6]	G	T	3.679e^-4	0.976	UTR_5_PRIME Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17233674	X_17233674_SNP [dm3] X_17339641_SNP [dm6]	T	G	3.679e^-4	0.976	INTERGENIC
2R	9137125	2R_9137125_SNP [dm3] 2R_13249620_SNP [dm6]	T	C	3.680e^-4	0.976	DOWNSTREAM Mp20 INTRON CG4712
3L	1263078	3L_1263078_SNP [dm3] 3L_1263078_SNP [dm6]	G	C	3.681e^-4	0.976	INTRON CG9134
3L	7454901	3L_7454901_SNP [dm3] 3L_7461801_SNP [dm6]	T	A	3.698e^-4	0.976	INTERGENIC
X	15183067	X_15183067_INS [dm3] X_15289034_INS [dm6]	C	CTATGCTCCTCCATGCTCCT...	3.700e^-4	0.976	UPSTREAM CR44663 INTERGENIC
2R	11920727	2R_11920727_INS [dm3] 2R_16033222_INS [dm6]	A	AGA	3.704e^-4	0.976	INTRON SP2353
2L	14431995	2L_14431995_SNP [dm3] 2L_14431995_SNP [dm6]	C	T	3.705e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	3666327	3L_3666327_SNP [dm3] 3L_3666327_SNP [dm6]	C	A	3.710e^-4	0.976	INTERGENIC
2L	9413152	2L_9413152_SNP [dm3] 2L_9413152_SNP [dm6]	G	A	3.713e^-4	0.976	INTRON Shawl
3R	26871611	3R_26871611_SNP [dm3] 3R_31045889_SNP [dm6]	C	T	3.713e^-4	0.976	UPSTREAM CG33920 INTRON CanA1
3L	18819482	3L_18819482_SNP [dm3] 3L_18826382_SNP [dm6]	A	T	3.713e^-4	0.976	SYNONYMOUS_CODING Cat
3R	17712325	3R_17712325_INS [dm3] 3R_21886603_INS [dm6]	T	TA	3.730e^-4	0.976	UPSTREAM CG6678 INTRON dnd
2L	1596552	2L_1596552_SNP [dm3] 2L_1596552_SNP [dm6]	C	T	3.731e^-4	0.976	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1596556	2L_1596556_SNP [dm3] 2L_1596556_SNP [dm6]	A	G	3.731e^-4	0.976	INTRON haf & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	473179	2R_473179_INS [dm3] 2R_4585674_INS [dm6]	G	GTGG	3.733e^-4	0.976	INTERGENIC
2L	7489803	2L_7489803_SNP [dm3] 2L_7489803_SNP [dm6]	T	C	3.736e^-4	0.976	INTRON Ziz
X	9107537	X_9107537_SNP [dm3] X_9213504_SNP [dm6]	A	C	3.737e^-4	0.976	INTERGENIC
3L	9340534	3L_9340534_INS [dm3] 3L_9347434_INS [dm6]	A	ATTGTA	3.739e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	3845577	3L_3845577_SNP [dm3] 3L_3845577_SNP [dm6]	G	A	3.739e^-4	0.976	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	2271399	2L_2271399_SNP [dm3] 2L_2271399_SNP [dm6]	T	G	3.742e^-4	0.976	EXON CR43753
2L	4310317	2L_4310317_SNP [dm3] 2L_4310317_SNP [dm6]	A	G	3.743e^-4	0.976	INTRON tutl
2R	10139899	2R_10139899_SNP [dm3] 2R_14252394_SNP [dm6]	A	G	3.744e^-4	0.976	UTR_3_PRIME Mdr50 DOWNSTREAM Hsc70-5
3L	14072226	3L_14072226_SNP [dm3] 3L_14079126_SNP [dm6]	C	T	3.756e^-4	0.976	INTRON btl	regulatory region REDfly_CRMs
2R	8436251	2R_8436251_SNP [dm3] 2R_12548746_SNP [dm6]	T	C	3.757e^-4	0.976	INTRON fra	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16912402	3R_16912402_SNP [dm3] 3R_21086680_SNP [dm6]	A	G	3.768e^-4	0.976	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	10579962	X_10579962_SNP [dm3] X_10685929_SNP [dm6]	T	C	3.769e^-4	0.976	INTRON X11Lbeta
3R	22027836	3R_22027836_SNP [dm3] 3R_26202114_SNP [dm6]	A	G	3.770e^-4	0.976	INTRON CR44320
3R	16528675	3R_16528675_SNP [dm3] 3R_20702953_SNP [dm6]	G	A	3.775e^-4	0.976	INTRON Oamb
3R	16528681	3R_16528681_SNP [dm3] 3R_20702959_SNP [dm6]	C	T	3.775e^-4	0.976	INTRON Oamb
3L	7274611	3L_7274611_SNP [dm3] 3L_7281511_SNP [dm6]	T	C	3.775e^-4	0.976	INTRON unc-13-4A
2L	13931942	2L_13931942_SNP [dm3] 2L_13931942_SNP [dm6]	T	A	3.778e^-4	0.976	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	16528741	3R_16528741_SNP [dm3] 3R_20703019_SNP [dm6]	C	T	3.780e^-4	0.976	INTRON Oamb
3L	1136713	3L_1136713_SNP [dm3] 3L_1136713_SNP [dm6]	A	G	3.797e^-4	0.976	INTERGENIC
2R	17886373	2R_17886373_SNP [dm3] 2R_21998868_SNP [dm6]	G	A	3.804e^-4	0.976	SYNONYMOUS_CODING CG34370
3L	18139124	3L_18139124_INS [dm3] 3L_18146024_INS [dm6]	G	GG	3.805e^-4	0.976	DOWNSTREAM gk INTERGENIC
2L	21913056	2L_21913056_SNP [dm3] 2L_21913056_SNP [dm6]	C	G	3.808e^-4	0.976	INTERGENIC	transposable element FlyBase
2R	15799429	2R_15799429_SNP [dm3] 2R_19911924_SNP [dm6]	C	G	3.819e^-4	0.976	UPSTREAM CR44573 INTERGENIC
2L	5736427	2L_5736427_SNP [dm3] 2L_5736427_SNP [dm6]	A	G	3.819e^-4	0.976	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8335378	2L_8335378_SNP [dm3] 2L_8335378_SNP [dm6]	A	T	3.820e^-4	0.976	INTERGENIC
X	8288322	X_8288322_SNP [dm3] X_8394289_SNP [dm6]	A	C	3.824e^-4	0.976	INTERGENIC
3R	20608114	3R_20608114_SNP [dm3] 3R_24782392_SNP [dm6]	G	A	3.836e^-4	0.976	SYNONYMOUS_CODING CG42331	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7488773	2L_7488773_SNP [dm3] 2L_7488773_SNP [dm6]	A	C	3.841e^-4	0.976	INTRON Ziz
2R	10816314	2R_10816314_SNP [dm3] 2R_14928809_SNP [dm6]	G	A	3.853e^-4	0.976	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6012741	2R_6012741_SNP [dm3] 2R_10125236_SNP [dm6]	A	G	3.871e^-4	0.976	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18940407	2L_18940407_SNP [dm3] 2L_18940407_SNP [dm6]	C	T	3.871e^-4	0.976	SYNONYMOUS_CODING ssp3	TF binding site mE1_TFBS_cad
3L	21699625	3L_21699625_SNP [dm3] 3L_21706525_SNP [dm6]	G	T	3.876e^-4	0.976	UPSTREAM CG32447 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	5447422	X_5447422_SNP [dm3] X_5553389_SNP [dm6]	T	C	3.883e^-4	0.976	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl
3L	2749140	3L_2749140_SNP [dm3] 3L_2749140_SNP [dm6]	T	A	3.897e^-4	0.976	INTRON Mrtf
2L	2503381	2L_2503381_SNP [dm3] 2L_2503381_SNP [dm6]	T	G	3.898e^-4	0.976	INTERGENIC
3L	11744740	3L_11744740_SNP [dm3] 3L_11751640_SNP [dm6]	T	C	3.898e^-4	0.976	SYNONYMOUS_CODING Gr68a INTRON CG6024	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9336986	3L_9336986_SNP [dm3] 3L_9343886_SNP [dm6]	A	G	3.902e^-4	0.976	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	12411617	3L_12411617_SNP [dm3] 3L_12418517_SNP [dm6]	A	G	3.906e^-4	0.976	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
X	10185982	X_10185982_SNP [dm3] X_10291949_SNP [dm6]	T	C	3.909e^-4	0.976	INTRON alpha-Man-I
X	5875185	X_5875185_SNP [dm3] X_5981152_SNP [dm6]	T	A	3.911e^-4	0.976	INTRON Grip
2L	20070214	2L_20070214_SNP [dm3] 2L_20070214_SNP [dm6]	A	G	3.922e^-4	0.976	SYNONYMOUS_CODING CG10730 UPSTREAM CR44907 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8173443	2R_8173443_SNP [dm3] 2R_12285938_SNP [dm6]	C	T	3.927e^-4	0.976	UPSTREAM CG42700 INTRON CG42700
X	20344519	X_20344519_SNP [dm3] X_20473492_SNP [dm6]	C	A	3.927e^-4	0.976	SYNONYMOUS_CODING RhoGAP19D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7482895	2L_7482895_SNP [dm3] 2L_7482895_SNP [dm6]	A	G	3.940e^-4	0.976	SPLICE_SITE_REGION Ziz SYNONYMOUS_CODING Ziz
3L	3712430	3L_3712430_SNP [dm3] 3L_3712430_SNP [dm6]	A	G	3.953e^-4	0.976	INTERGENIC
3L	13366747	3L_13366747_SNP [dm3] 3L_13373647_SNP [dm6]	T	C	3.953e^-4	0.976	INTERGENIC
2L	6809091	2L_6809091_SNP [dm3] 2L_6809091_SNP [dm6]	G	A	3.962e^-4	0.976	INTERGENIC
3L	2749169	3L_2749169_SNP [dm3] 3L_2749169_SNP [dm6]	A	T	3.967e^-4	0.976	INTRON Mrtf
2R	20436277	2R_20436277_SNP [dm3] 2R_24548754_SNP [dm6]	A	G	3.973e^-4	0.976	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25909823	3R_25909823_DEL [dm3] 3R_30084101_DEL [dm6]	AA	T	3.976e^-4	0.976	INTRON sima	TF binding site mE1_TFBS_Trl
X	14816612	X_14816612_SNP [dm3] X_14922579_SNP [dm6]	T	C	3.980e^-4	0.976	INTRON Flo2 & 1 other
2L	11062215	2L_11062215_SNP [dm3] 2L_11062215_SNP [dm6]	T	C	3.981e^-4	0.976	INTRON Samuel	TF binding site mE1_TFBS_HSA
3L	11330564	3L_11330564_SNP [dm3] 3L_11337464_SNP [dm6]	C	T	3.981e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_sens
3R	846066	3R_846066_SNP [dm3] 3R_5020344_SNP [dm6]	C	G	3.988e^-4	0.976	INTRON CR45585	TF binding site BDTNP1_TFBS_dl
2R	3532195	2R_3532195_SNP [dm3] 2R_7644690_SNP [dm6]	G	C	3.993e^-4	0.976	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2R	16700210	2R_16700210_SNP [dm3] 2R_20812705_SNP [dm6]	G	T	3.996e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14677006	3R_14677006_SNP [dm3] 3R_18851284_SNP [dm6]	C	A	3.997e^-4	0.976	UPSTREAM CR45633 DOWNSTREAM CG31226 INTERGENIC
3L	10996101	3L_10996101_SNP [dm3] 3L_11003001_SNP [dm6]	A	T	4.002e^-4	0.976	INTRON klu
3R	338157	3R_338157_SNP [dm3] 3R_4512435_SNP [dm6]	T	C	4.009e^-4	0.976	INTRON CG34357
X	13333485	X_13333485_SNP [dm3] X_13439452_SNP [dm6]	T	G	4.011e^-4	0.976	INTERGENIC
2L	15124859	2L_15124859_SNP [dm3] 2L_15124859_SNP [dm6]	T	A	4.013e^-4	0.976	INTERGENIC
3L	15883094	3L_15883094_SNP [dm3] 3L_15889994_SNP [dm6]	C	T	4.021e^-4	0.976	INTRON pHCl
X	8638295	X_8638295_SNP [dm3] X_8744262_SNP [dm6]	T	C	4.024e^-4	0.976	INTERGENIC
2R	454733	2R_454733_SNP [dm3] 2R_4567228_SNP [dm6]	T	C	4.025e^-4	0.976	INTERGENIC	transposable element FlyBase
3R	26075497	3R_26075497_MNP [dm3] 3R_30249775_MNP [dm6]	GGA	AAT	4.032e^-4	0.976	NON_SYNONYMOUS_CODING CG34299	TF binding site mE1_TFBS_inv
3L	3575990	3L_3575990_SNP [dm3] 3L_3575990_SNP [dm6]	T	A	4.042e^-4	0.976	INTRON Eip63E
3R	22294984	3R_22294984_DEL [dm3] 3R_26469262_DEL [dm6]	TG	T	4.046e^-4	0.976	DOWNSTREAM plum INTRON CG5455
3L	19378808	3L_19378808_SNP [dm3] 3L_19385708_SNP [dm6]	C	G	4.052e^-4	0.976	INTRON CG32206
3R	22278206	3R_22278206_SNP [dm3] 3R_26452484_SNP [dm6]	G	C	4.061e^-4	0.976	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
X	8914632	X_8914632_SNP [dm3] X_9020599_SNP [dm6]	T	A	4.071e^-4	0.976	INTRON CR43836 & 1 other
2R	17886392	2R_17886392_SNP [dm3] 2R_21998887_SNP [dm6]	G	A	4.073e^-4	0.976	SYNONYMOUS_CODING CG34370
2R	8345647	2R_8345647_SNP [dm3] 2R_12458142_SNP [dm6]	G	T	4.094e^-4	0.976	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6069036	3L_6069036_SNP [dm3] 3L_6075936_SNP [dm6]	C	T	4.094e^-4	0.976	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	21082862	3L_21082862_SNP [dm3] 3L_21089762_SNP [dm6]	C	G	4.096e^-4	0.976	UPSTREAM CG33285 INTRON ko	regulatory region REDfly_CRMs
X	14813943	X_14813943_SNP [dm3] X_14919910_SNP [dm6]	G	T	4.098e^-4	0.976	SYNONYMOUS_CODING CG9503 INTRON Flo2	TF binding site mE1_TFBS_sens
X	16606869	X_16606869_SNP [dm3] X_16712836_SNP [dm6]	C	A	4.105e^-4	0.976	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15557396	2R_15557396_SNP [dm3] 2R_19669891_SNP [dm6]	T	A	4.108e^-4	0.976	UPSTREAM hrg & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1285904	2R_1285904_SNP [dm3] 2R_5398399_SNP [dm6]	A	T	4.110e^-4	0.976	INTERGENIC
3R	25328692	3R_25328692_SNP [dm3] 3R_29502970_SNP [dm6]	T	C	4.110e^-4	0.976	SYNONYMOUS_CODING Trc8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	14231106	X_14231106_SNP [dm3] X_14337073_SNP [dm6]	C	G	4.111e^-4	0.976	INTRON dpr8
2L	15351926	2L_15351926_SNP [dm3] 2L_15351926_SNP [dm6]	T	A	4.113e^-4	0.976	INTERGENIC
3L	1277323	3L_1277323_SNP [dm3] 3L_1277323_SNP [dm6]	G	A	4.114e^-4	0.976	INTRON CG32333
2L	20070211	2L_20070211_SNP [dm3] 2L_20070211_SNP [dm6]	A	G	4.118e^-4	0.976	SYNONYMOUS_CODING CG10730 UPSTREAM CR44907 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12498102	2L_12498102_DEL [dm3] 2L_12498102_DEL [dm6]	TT	T	4.120e^-4	0.976	UPSTREAM t-cup INTRON bun
2L	5913750	2L_5913750_SNP [dm3] 2L_5913750_SNP [dm6]	T	C	4.128e^-4	0.976	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
3R	10199048	3R_10199048_SNP [dm3] 3R_14373326_SNP [dm6]	T	C	4.140e^-4	0.976	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	16097502	2L_16097502_SNP [dm3] 2L_16097502_SNP [dm6]	G	A	4.145e^-4	0.976	INTERGENIC
X	7530868	X_7530868_SNP [dm3] X_7636835_SNP [dm6]	G	A	4.147e^-4	0.976	INTRON ct
3L	6068935	3L_6068935_SNP [dm3] 3L_6075835_SNP [dm6]	T	C	4.162e^-4	0.976	SYNONYMOUS_CODING CG6610 UPSTREAM CG13295 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	21152679	2L_21152679_SNP [dm3] 2L_21152679_SNP [dm6]	A	G	4.178e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10264751	2R_10264751_SNP [dm3] 2R_14377246_SNP [dm6]	G	C	4.182e^-4	0.976	UPSTREAM Dh44-R1 DOWNSTREAM CG30075 INTERGENIC
3L	19962415	3L_19962415_SNP [dm3] 3L_19969315_SNP [dm6]	C	T	4.183e^-4	0.976	INTRON Ac76E
3L	17750743	3L_17750743_SNP [dm3] 3L_17757643_SNP [dm6]	G	A	4.197e^-4	0.976	UPSTREAM Msi & 1 other INTRON Adgf-A & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16203544	3L_16203544_SNP [dm3] 3L_16210444_SNP [dm6]	T	G	4.211e^-4	0.976	INTERGENIC
3R	13850461	3R_13850461_SNP [dm3] 3R_18024739_SNP [dm6]	C	T	4.211e^-4	0.976	SYNONYMOUS_CODING CG7794	TF binding site mE1_TFBS_cad
3L	17683720	3L_17683720_SNP [dm3] 3L_17690620_SNP [dm6]	A	T	4.211e^-4	0.976	INTRON Ccn
2R	14542307	2R_14542307_INS [dm3] 2R_18654802_INS [dm6]	A	AC	4.212e^-4	0.976	INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3838331	2L_3838331_SNP [dm3] 2L_3838331_SNP [dm6]	G	A	4.213e^-4	0.976	SYNONYMOUS_CODING slp2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4554215	2L_4554215_INS [dm3] 2L_4554215_INS [dm6]	A	AT	4.222e^-4	0.976	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16086069	2R_16086069_SNP [dm3] 2R_20198564_SNP [dm6]	C	T	4.226e^-4	0.976	INTERGENIC
2R	10265216	2R_10265216_SNP [dm3] 2R_14377711_SNP [dm6]	T	C	4.231e^-4	0.976	UPSTREAM Dh44-R1 INTERGENIC
3L	5469378	3L_5469378_SNP [dm3] 3L_5476278_SNP [dm6]	G	A	4.232e^-4	0.976	INTERGENIC
3R	7320707	3R_7320707_INS [dm3] 3R_11494985_INS [dm6]	T	TAGTTTTTTTTCTT...	4.234e^-4	0.976	INTERGENIC
2R	13267976	2R_13267976_SNP [dm3] 2R_17380471_SNP [dm6]	A	T	4.244e^-4	0.976	INTERGENIC
2L	14431990	2L_14431990_SNP [dm3] 2L_14431990_SNP [dm6]	C	G	4.248e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	11828426	2L_11828426_SNP [dm3] 2L_11828426_SNP [dm6]	T	C	4.263e^-4	0.976	INTRON Pde1c & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	11699269	3L_11699269_SNP [dm3] 3L_11706169_SNP [dm6]	G	T	4.267e^-4	0.976	INTRON CG11658
3L	9818570	3L_9818570_SNP [dm3] 3L_9825470_SNP [dm6]	A	T	4.275e^-4	0.976	SYNONYMOUS_CODING CG43897 INTRON CG43897	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	177565	2L_177565_SNP [dm3] 2L_177565_SNP [dm6]	C	A	4.288e^-4	0.976	INTRON spen
2R	4829655	2R_4829655_SNP [dm3] 2R_8942150_SNP [dm6]	T	A	4.299e^-4	0.976	EXON CR44273
3L	10996100	3L_10996100_SNP [dm3] 3L_11003000_SNP [dm6]	G	T	4.300e^-4	0.976	INTRON klu
X	16266035	X_16266035_SNP [dm3] X_16372002_SNP [dm6]	G	A	4.301e^-4	0.976	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9830127	2R_9830127_SNP [dm3] 2R_13942622_SNP [dm6]	G	T	4.302e^-4	0.976	NON_SYNONYMOUS_CODING DJ-1alpha UPSTREAM shot DOWNSTREAM AGO1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_ttk
X	9714314	X_9714314_SNP [dm3] X_9820281_SNP [dm6]	G	C	4.306e^-4	0.976	INTRON CG32698
X	1466219	X_1466219_INS [dm3] X_1572186_INS [dm6]	T	TT	4.308e^-4	0.976	INTRON Mur2B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	16814957	2R_16814957_SNP [dm3] 2R_20927452_SNP [dm6]	A	G	4.311e^-4	0.976	INTRON Rx
3R	23381559	3R_23381559_SNP [dm3] 3R_27555837_SNP [dm6]	C	T	4.312e^-4	0.976	INTRON Klp98A	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	10027406	3L_10027406_SNP [dm3] 3L_10034306_SNP [dm6]	G	C	4.313e^-4	0.976	INTRON dpr6
2L	1251187	2L_1251187_SNP [dm3] 2L_1251187_SNP [dm6]	G	A	4.317e^-4	0.976	INTERGENIC
2L	9967465	2L_9967465_SNP [dm3] 2L_9967465_SNP [dm6]	A	G	4.325e^-4	0.976	UTR_5_PRIME RpL13 UPSTREAM Dref INTRON RpL13	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12233214	3L_12233214_SNP [dm3] 3L_12240114_SNP [dm6]	G	A	4.333e^-4	0.976	INTRON app
2R	8911761	2R_8911761_SNP [dm3] 2R_13024256_SNP [dm6]	A	G	4.342e^-4	0.976	INTERGENIC
3L	3574229	3L_3574229_SNP [dm3] 3L_3574229_SNP [dm6]	T	A	4.353e^-4	0.976	INTRON Eip63E
2L	15351969	2L_15351969_SNP [dm3] 2L_15351969_SNP [dm6]	A	T	4.361e^-4	0.976	INTERGENIC
2R	17170168	2R_17170168_SNP [dm3] 2R_21282663_SNP [dm6]	G	A	4.366e^-4	0.976	UTR_5_PRIME MFS16 UPSTREAM MFS16 INTRON MFS16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	13091520	3L_13091520_SNP [dm3] 3L_13098420_SNP [dm6]	A	T	4.367e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	16240224	3R_16240224_DEL [dm3] 3R_20414502_DEL [dm6]	CATTGA	C	4.373e^-4	0.976	INTRON Gfrl
3L	21340632	3L_21340632_SNP [dm3] 3L_21347532_SNP [dm6]	G	A	4.374e^-4	0.976	UPSTREAM ebd2 INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	10266789	X_10266789_SNP [dm3] X_10372756_SNP [dm6]	T	C	4.379e^-4	0.976	SYNONYMOUS_CODING CG32686 INTRON CG17841	TF binding site mE1_TFBS_chinmo
3R	18263336	3R_18263336_SNP [dm3] 3R_22437614_SNP [dm6]	C	G	4.400e^-4	0.976	INTERGENIC
3L	21336778	3L_21336778_SNP [dm3] 3L_21343678_SNP [dm6]	T	C	4.400e^-4	0.976	UTR_5_PRIME CG7324 UPSTREAM CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16814970	2R_16814970_SNP [dm3] 2R_20927465_SNP [dm6]	G	C	4.401e^-4	0.976	INTRON Rx
2R	9137010	2R_9137010_SNP [dm3] 2R_13249505_SNP [dm6]	G	A	4.402e^-4	0.976	SPLICE_SITE_REGION CG4712 DOWNSTREAM Mp20 INTRON CG4712
2R	5859202	2R_5859202_SNP [dm3] 2R_9971697_SNP [dm6]	T	C	4.404e^-4	0.976	SYNONYMOUS_CODING CG12134 DOWNSTREAM Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	473185	2R_473185_SNP [dm3] 2R_4585680_SNP [dm6]	T	G	4.409e^-4	0.976	INTERGENIC
X	19585689	X_19585689_SNP [dm3] X_19691656_SNP [dm6]	C	T	4.437e^-4	0.976	INTRON Mer	TF binding site mE1_TFBS_sens
2R	10816315	2R_10816315_SNP [dm3] 2R_14928810_SNP [dm6]	T	G	4.447e^-4	0.976	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	21675481	2L_21675481_SNP [dm3] 2L_21675481_SNP [dm6]	C	G	4.448e^-4	0.976	INTRON CG2225	transposable element FlyBase
2R	17341774	2R_17341774_SNP [dm3] 2R_21454269_SNP [dm6]	A	G	4.448e^-4	0.976	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2R	6873955	2R_6873955_SNP [dm3] 2R_10986450_SNP [dm6]	C	T	4.449e^-4	0.976	INTRON luna
3L	6255719	3L_6255719_SNP [dm3] 3L_6262619_SNP [dm6]	A	G	4.452e^-4	0.976	UTR_5_PRIME ImpL3 DOWNSTREAM CR44522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15914883	2R_15914883_SNP [dm3] 2R_20027378_SNP [dm6]	G	C	4.452e^-4	0.976	INTERGENIC
2L	9412134	2L_9412134_SNP [dm3] 2L_9412134_SNP [dm6]	G	T	4.453e^-4	0.976	INTRON Shawl
2R	20443418	2R_20443418_SNP [dm3] 2R_24555895_SNP [dm6]	T	A	4.454e^-4	0.976	INTRON CG4622 & 1 other
2L	8474388	2L_8474388_SNP [dm3] 2L_8474388_SNP [dm6]	T	C	4.460e^-4	0.976	INTRON d
3L	5087467	3L_5087467_SNP [dm3] 3L_5087467_SNP [dm6]	T	C	4.465e^-4	0.976	INTERGENIC
2R	19728331	2R_19728331_SNP [dm3] 2R_23840808_SNP [dm6]	C	T	4.465e^-4	0.976	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
2R	473192	2R_473192_INS [dm3] 2R_4585687_INS [dm6]	T	TCTG	4.467e^-4	0.976	INTERGENIC
2R	7758927	2R_7758927_SNP [dm3] 2R_11871422_SNP [dm6]	C	A	4.467e^-4	0.976	NON_SYNONYMOUS_CODING CG13185
3L	6524221	3L_6524221_SNP [dm3] 3L_6531121_SNP [dm6]	G	A	4.471e^-4	0.976	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	825918	2L_825918_SNP [dm3] 2L_825918_SNP [dm6]	C	T	4.472e^-4	0.976	UPSTREAM dock & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
4	1045094	4_1045094_SNP [dm3] 4_1024468_SNP [dm6]	A	C	4.473e^-4	0.976	INTRON PlexA	transposable element FlyBase
2R	6442755	2R_6442755_SNP [dm3] 2R_10555250_SNP [dm6]	A	G	4.477e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6513576	3L_6513576_SNP [dm3] 3L_6520476_SNP [dm6]	C	T	4.477e^-4	0.976	INTRON sfl
3R	7233510	3R_7233510_SNP [dm3] 3R_11407788_SNP [dm6]	G	T	4.486e^-4	0.976	UPSTREAM mRpL40 DOWNSTREAM pros INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14240291	2R_14240291_SNP [dm3] 2R_18352786_SNP [dm6]	C	T	4.488e^-4	0.976	INTRON sbb	TF binding site mE1_TFBS_HSA
2R	17636850	2R_17636850_SNP [dm3] 2R_21749345_SNP [dm6]	T	C	4.493e^-4	0.976	INTERGENIC
2L	17879044	2L_17879044_SNP [dm3] 2L_17879044_SNP [dm6]	C	T	4.512e^-4	0.976	INTERGENIC
3L	6793964	3L_6793964_SNP [dm3] 3L_6800864_SNP [dm6]	G	T	4.513e^-4	0.976	INTERGENIC
3L	12597077	3L_12597077_SNP [dm3] 3L_12603977_SNP [dm6]	A	T	4.516e^-4	0.976	INTERGENIC
3L	15877418	3L_15877418_SNP [dm3] 3L_15884318_SNP [dm6]	T	A	4.521e^-4	0.976	DOWNSTREAM CR44050 INTRON pHCl
3L	9336493	3L_9336493_SNP [dm3] 3L_9343393_SNP [dm6]	G	A	4.522e^-4	0.976	UPSTREAM PGRP-LC INTRON PGRP-LC
X	19585711	X_19585711_SNP [dm3] X_19691678_SNP [dm6]	C	G	4.529e^-4	0.976	INTRON Mer	TF binding site mE1_TFBS_sens
3R	17326309	3R_17326309_SNP [dm3] 3R_21500587_SNP [dm6]	G	A	4.542e^-4	0.976	INTRON C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	13333512	X_13333512_SNP [dm3] X_13439479_SNP [dm6]	A	T	4.552e^-4	0.976	INTERGENIC
2L	10358018	2L_10358018_SNP [dm3] 2L_10358018_SNP [dm6]	G	A	4.557e^-4	0.976	UTR_3_PRIME CG5045 DOWNSTREAM Cand1 & 1 other
2L	10824324	2L_10824324_SNP [dm3] 2L_10824324_SNP [dm6]	G	A	4.559e^-4	0.976	INTRON Nos
2L	5913738	2L_5913738_SNP [dm3] 2L_5913738_SNP [dm6]	A	G	4.562e^-4	0.976	SYNONYMOUS_CODING bchs	TF binding site mE1_TFBS_cad
2R	10816307	2R_10816307_DEL [dm3] 2R_14928802_DEL [dm6]	ATCTA	G	4.563e^-4	0.976	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7433272	X_7433272_SNP [dm3] X_7539239_SNP [dm6]	T	A	4.566e^-4	0.976	INTRON CG32719
3L	2990353	3L_2990353_DEL [dm3] 3L_2990353_DEL [dm6]	TA	C	4.574e^-4	0.976	INTERGENIC
X	7321957	X_7321957_SNP [dm3] X_7427924_SNP [dm6]	A	G	4.577e^-4	0.976	INTERGENIC
2L	4624350	2L_4624350_SNP [dm3] 2L_4624350_SNP [dm6]	A	G	4.581e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17062225	2L_17062225_SNP [dm3] 2L_17062225_SNP [dm6]	C	T	4.588e^-4	0.976	INTERGENIC
3R	14440191	3R_14440191_SNP [dm3] 3R_18614469_SNP [dm6]	C	T	4.588e^-4	0.976	INTRON qin & 1 other
2L	16274065	2L_16274065_SNP [dm3] 2L_16274065_SNP [dm6]	T	C	4.591e^-4	0.976	INTRON crp	TF binding site BDTNP1_TFBS_dl
3R	26075141	3R_26075141_SNP [dm3] 3R_30249419_SNP [dm6]	A	G	4.592e^-4	0.976	UPSTREAM CG34299 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens
2L	12454739	2L_12454739_SNP [dm3] 2L_12454739_SNP [dm6]	A	C	4.599e^-4	0.976	DOWNSTREAM bun EXON CR17024	TF binding site mE1_TFBS_sens
X	16606212	X_16606212_SNP [dm3] X_16712179_SNP [dm6]	C	T	4.602e^-4	0.976	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26938503	3R_26938503_SNP [dm3] 3R_31112781_SNP [dm6]	G	A	4.604e^-4	0.976	INTERGENIC
2L	9173121	2L_9173121_SNP [dm3] 2L_9173121_SNP [dm6]	C	G	4.604e^-4	0.976	INTRON tai
2L	9414063	2L_9414063_SNP [dm3] 2L_9414063_SNP [dm6]	T	C	4.605e^-4	0.976	INTRON Shawl
X	16266038	X_16266038_SNP [dm3] X_16372005_SNP [dm6]	T	A	4.605e^-4	0.976	DOWNSTREAM nonA INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13309499	2L_13309499_SNP [dm3] 2L_13309499_SNP [dm6]	G	A	4.605e^-4	0.976	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG43778	TF binding site mE1_TFBS_chinmo
3R	25824773	3R_25824773_SNP [dm3] 3R_29999051_SNP [dm6]	C	T	4.606e^-4	0.976	SYNONYMOUS_CODING CG11504 UPSTREAM CG34298	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	454869	2R_454869_SNP [dm3] 2R_4567364_SNP [dm6]	A	C	4.606e^-4	0.976	INTERGENIC	transposable element FlyBase
2R	14278029	2R_14278029_DEL [dm3] 2R_18390524_DEL [dm6]	CACATCATTGG...	TTATA	4.618e^-4	0.976	DOWNSTREAM CG15065 INTRON CG15068
2R	473173	2R_473173_SNP [dm3] 2R_4585668_SNP [dm6]	A	T	4.618e^-4	0.976	INTERGENIC
X	10910026	X_10910026_SNP [dm3] X_11015993_SNP [dm6]	C	G	4.624e^-4	0.976	INTRON CG42339	TF binding site mE1_TFBS_inv
3L	9947250	3L_9947250_SNP [dm3] 3L_9954150_SNP [dm6]	G	T	4.625e^-4	0.976	INTRON CG34356
3L	3572730	3L_3572730_SNP [dm3] 3L_3572730_SNP [dm6]	A	G	4.631e^-4	0.976	INTRON Eip63E
2R	18278848	2R_18278848_SNP [dm3] 2R_22391343_SNP [dm6]	G	A	4.651e^-4	0.976	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11697347	3L_11697347_SNP [dm3] 3L_11704247_SNP [dm6]	T	G	4.658e^-4	0.976	INTRON CG11658
2R	17394071	2R_17394071_SNP [dm3] 2R_21506566_SNP [dm6]	A	G	4.660e^-4	0.976	INTRON MESK2
2L	6810345	2L_6810345_SNP [dm3] 2L_6810345_SNP [dm6]	T	A	4.667e^-4	0.976	INTERGENIC
3R	25267690	3R_25267690_SNP [dm3] 3R_29441968_SNP [dm6]	A	G	4.676e^-4	0.976	INTRON Ptp99A
X	14499345	X_14499345_SNP [dm3] X_14605312_SNP [dm6]	T	C	4.678e^-4	0.976	INTRON NetA
2R	473164	2R_473164_SNP [dm3] 2R_4585659_SNP [dm6]	A	C	4.680e^-4	0.976	INTERGENIC
3L	3572694	3L_3572694_SNP [dm3] 3L_3572694_SNP [dm6]	G	A	4.680e^-4	0.976	INTRON Eip63E
3L	10881014	3L_10881014_DEL [dm3] 3L_10887914_DEL [dm6]	ATACA	A	4.682e^-4	0.976	INTERGENIC
2R	8339434	2R_8339434_SNP [dm3] 2R_12451929_SNP [dm6]	G	T	4.686e^-4	0.976	DOWNSTREAM Dyb INTRON Dyb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	7434935	2L_7434935_SNP [dm3] 2L_7434935_SNP [dm6]	A	T	4.695e^-4	0.976	INTERGENIC
2L	9390857	2L_9390857_SNP [dm3] 2L_9390857_SNP [dm6]	T	A	4.700e^-4	0.976	SYNONYMOUS_CODING Aldh INTRON Shawl	TF binding site mE1_TFBS_chinmo
3L	2439566	3L_2439566_SNP [dm3] 3L_2439566_SNP [dm6]	C	G	4.700e^-4	0.976	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10654798	2L_10654798_SNP [dm3] 2L_10654798_SNP [dm6]	T	G	4.701e^-4	0.976	DOWNSTREAM CG17098 INTERGENIC
2R	8180109	2R_8180109_SNP [dm3] 2R_12292604_SNP [dm6]	T	A	4.706e^-4	0.976	INTRON CG42700
X	7321941	X_7321941_SNP [dm3] X_7427908_SNP [dm6]	T	C	4.708e^-4	0.976	INTERGENIC
X	20554724	X_20554724_SNP [dm3] X_20683697_SNP [dm6]	G	A	4.710e^-4	0.976	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
3R	26151939	3R_26151939_SNP [dm3] 3R_30326217_SNP [dm6]	G	A	4.711e^-4	0.976	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	9338028	3L_9338028_SNP [dm3] 3L_9344928_SNP [dm6]	C	A	4.718e^-4	0.976	SYNONYMOUS_CODING PGRP-LC
3L	11702510	3L_11702510_SNP [dm3] 3L_11709410_SNP [dm6]	A	T	4.719e^-4	0.976	UTR_5_PRIME mtTFB1 UTR_3_PRIME Ccdc56 UPSTREAM CG11658	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	21915891	2L_21915891_SNP [dm3] 2L_21915891_SNP [dm6]	G	T	4.729e^-4	0.976	UPSTREAM CG11634 & 1 other INTERGENIC
2L	12642756	2L_12642756_SNP [dm3] 2L_12642756_SNP [dm6]	A	G	4.730e^-4	0.976	INTRON Ref2
2L	3838058	2L_3838058_SNP [dm3] 2L_3838058_SNP [dm6]	C	T	4.736e^-4	0.976	SYNONYMOUS_CODING slp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15824119	3L_15824119_SNP [dm3] 3L_15831019_SNP [dm6]	A	T	4.739e^-4	0.976	UTR_3_PRIME dbo
3L	10040068	3L_10040068_SNP [dm3] 3L_10046968_SNP [dm6]	C	G	4.739e^-4	0.976	INTRON dpr6
3R	26936267	3R_26936267_SNP [dm3] 3R_31110545_SNP [dm6]	G	A	4.749e^-4	0.976	INTERGENIC
X	17244514	X_17244514_SNP [dm3] X_17350481_SNP [dm6]	G	A	4.761e^-4	0.976	INTERGENIC
3R	22278220	3R_22278220_SNP [dm3] 3R_26452498_SNP [dm6]	G	A	4.762e^-4	0.976	UPSTREAM CG5447 DOWNSTREAM Hex-t2 INTERGENIC
2R	473194	2R_473194_SNP [dm3] 2R_4585689_SNP [dm6]	A	G	4.762e^-4	0.976	INTERGENIC
2L	224617	2L_224617_SNP [dm3] 2L_224617_SNP [dm6]	T	G	4.774e^-4	0.976	INTRON kis EXON CR44222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
3L	5689937	3L_5689937_SNP [dm3] 3L_5696837_SNP [dm6]	C	T	4.788e^-4	0.976	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4505621	2L_4505621_SNP [dm3] 2L_4505621_SNP [dm6]	T	A	4.790e^-4	0.976	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25041920	3R_25041920_DEL [dm3] 3R_29216198_DEL [dm6]	AATAC	A	4.792e^-4	0.976	UPSTREAM mir-996 DOWNSTREAM mir-279 INTRON CR31044 EXON CR31044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4505273	2L_4505273_SNP [dm3] 2L_4505273_SNP [dm6]	T	C	4.796e^-4	0.976	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5267597	3L_5267597_SNP [dm3] 3L_5274497_SNP [dm6]	C	T	4.803e^-4	0.976	INTRON shep	TF binding site mE1_TFBS_inv
2L	10844569	2L_10844569_SNP [dm3] 2L_10844569_SNP [dm6]	G	A	4.805e^-4	0.976	NON_SYNONYMOUS_CODING CG17139 UTR_5_PRIME CG17140 UPSTREAM CG17140
2R	15799433	2R_15799433_SNP [dm3] 2R_19911928_SNP [dm6]	G	A	4.815e^-4	0.976	UPSTREAM CR44573 INTERGENIC
2L	17879074	2L_17879074_DEL [dm3] 2L_17879074_DEL [dm6]	TGAGACAATTTT...	T	4.816e^-4	0.976	INTERGENIC
2R	439888	2R_439888_SNP [dm3] 2R_4552383_SNP [dm6]	A	C	4.817e^-4	0.976	INTRON Stlk	transposable element FlyBase
X	13333575	X_13333575_SNP [dm3] X_13439542_SNP [dm6]	C	T	4.825e^-4	0.976	INTERGENIC
X	12220675	X_12220675_SNP [dm3] X_12326642_SNP [dm6]	A	G	4.846e^-4	0.976	INTRON Ten-a
3R	25605407	3R_25605407_SNP [dm3] 3R_29779685_SNP [dm6]	A	G	4.867e^-4	0.976	SYNONYMOUS_CODING fig INTRON kay	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19040287	3R_19040287_SNP [dm3] 3R_23214565_SNP [dm6]	C	A	4.871e^-4	0.976	UPSTREAM cnc INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
3R	11674118	3R_11674118_SNP [dm3] 3R_15848396_SNP [dm6]	A	T	4.874e^-4	0.976	UTR_3_PRIME CG4546 INTRON cv-d	TF binding site mE1_TFBS_cad
3L	6068237	3L_6068237_SNP [dm3] 3L_6075137_SNP [dm6]	A	G	4.882e^-4	0.976	UTR_5_PRIME CG13295 UPSTREAM CG6610	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5857411	2R_5857411_SNP [dm3] 2R_9969906_SNP [dm6]	C	T	4.889e^-4	0.976	INTRON Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15995453	3R_15995453_SNP [dm3] 3R_20169731_SNP [dm6]	T	C	4.892e^-4	0.976	INTRON CG5023	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	7530597	X_7530597_SNP [dm3] X_7636564_SNP [dm6]	C	T	4.893e^-4	0.976	INTRON ct	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	20200504	X_20200504_SNP [dm3] X_20329477_SNP [dm6]	T	A	4.902e^-4	0.976	START_GAINED CG1504 UTR_5_PRIME CG1504 DOWNSTREAM CG1631 INTRON CG1504	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10464781	2R_10464781_SNP [dm3] 2R_14577276_SNP [dm6]	C	A	4.902e^-4	0.976	INTRON ttv	TF binding site mE1_TFBS_Trl
2L	15861038	2L_15861038_SNP [dm3] 2L_15861038_SNP [dm6]	T	C	4.904e^-4	0.976	INTERGENIC
2R	421358	2R_421358_SNP [dm3] 2R_4533853_SNP [dm6]	C	A	4.904e^-4	0.976	INTERGENIC	transposable element FlyBase
2L	5943559	2L_5943559_DEL [dm3] 2L_5943559_DEL [dm6]	TAG	A	4.906e^-4	0.976	UPSTREAM Gpdh & 1 other DOWNSTREAM CR45289 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
X	10185921	X_10185921_SNP [dm3] X_10291888_SNP [dm6]	T	C	4.919e^-4	0.976	INTRON alpha-Man-I
3R	25098607	3R_25098607_DEL [dm3] 3R_29272885_DEL [dm6]	CC	C	4.936e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs
3R	10904047	3R_10904047_DEL [dm3] 3R_15078325_DEL [dm6]	GGTAG	G	4.947e^-4	0.976	DOWNSTREAM CG6974 & 1 other INTERGENIC
3L	9340509	3L_9340509_INS [dm3] 3L_9347409_INS [dm6]	T	CACATACACATATTAATTGA...	4.949e^-4	0.976	DOWNSTREAM PGRP-LC INTRON PGRP-LC
3L	6524425	3L_6524425_SNP [dm3] 3L_6531325_SNP [dm6]	T	G	4.955e^-4	0.976	SYNONYMOUS_CODING CG32396 INTRON sfl	TF binding site mE1_TFBS_cad
3L	4830769	3L_4830769_SNP [dm3] 3L_4830769_SNP [dm6]	G	C	4.958e^-4	0.976	SYNONYMOUS_CODING CG13708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9117338	2R_9117338_SNP [dm3] 2R_13229833_SNP [dm6]	A	C	4.959e^-4	0.976	SYNONYMOUS_CODING Pex13 UPSTREAM fsd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6531960	3L_6531960_SNP [dm3] 3L_6538860_SNP [dm6]	A	G	4.971e^-4	0.976	INTRON sfl
2L	4553274	2L_4553274_SNP [dm3] 2L_4553274_SNP [dm6]	G	A	4.982e^-4	0.976	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9749174	2L_9749174_SNP [dm3] 2L_9749174_SNP [dm6]	G	C	4.997e^-4	0.976	NON_SYNONYMOUS_CODING Cyp4e3
2L	12498105	2L_12498105_DEL [dm3] 2L_12498105_DEL [dm6]	TCA	T	5.017e^-4	0.976	UPSTREAM t-cup INTRON bun
2L	15363129	2L_15363129_SNP [dm3] 2L_15363129_SNP [dm6]	A	T	5.023e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16413291	2L_16413291_INS [dm3] 2L_16413291_INS [dm6]	A	TT	5.023e^-4	0.976	INTRON CG5888
3L	20023660	3L_20023660_SNP [dm3] 3L_20030560_SNP [dm6]	T	C	5.025e^-4	0.976	INTERGENIC
2R	7833158	2R_7833158_SNP [dm3] 2R_11945653_SNP [dm6]	C	G	5.034e^-4	0.976	INTRON CG13188
2L	13931984	2L_13931984_DEL [dm3] 2L_13931984_DEL [dm6]	TCTAGCTGTATT...	T	5.043e^-4	0.976	UPSTREAM CG42711 DOWNSTREAM CG16885 INTRON Ance-3
3R	14797319	3R_14797319_SNP [dm3] 3R_18971597_SNP [dm6]	T	C	5.054e^-4	0.976	INTRON CG42613 & 1 other
3L	6114164	3L_6114164_SNP [dm3] 3L_6121064_SNP [dm6]	A	T	5.056e^-4	0.976	INTRON Ets65A	TF binding site mE1_TFBS_HSA
2R	16086046	2R_16086046_SNP [dm3] 2R_20198541_SNP [dm6]	A	G	5.066e^-4	0.976	INTERGENIC
2R	16086090	2R_16086090_SNP [dm3] 2R_20198585_SNP [dm6]	A	T	5.066e^-4	0.976	INTERGENIC
2R	458975	2R_458975_INS [dm3] 2R_4571470_INS [dm6]	C	CACGCCCGTCGCAGGCGCC...	5.071e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7937697	3L_7937697_SNP [dm3] 3L_7944597_SNP [dm6]	G	A	5.074e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13087533	3L_13087533_SNP [dm3] 3L_13094433_SNP [dm6]	C	T	5.081e^-4	0.976	INTERGENIC
2L	14302189	2L_14302189_SNP [dm3] 2L_14302189_SNP [dm6]	A	C	5.093e^-4	0.976	INTRON wb
2L	2926488	2L_2926488_SNP [dm3] 2L_2926488_SNP [dm6]	T	G	5.096e^-4	0.976	INTRON lilli
X	10574944	X_10574944_SNP [dm3] X_10680911_SNP [dm6]	G	T	5.097e^-4	0.976	INTRON X11Lbeta	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	9085253	X_9085253_SNP [dm3] X_9191220_SNP [dm6]	G	T	5.115e^-4	0.976	UPSTREAM CG12115 & 1 other INTERGENIC
2R	449467	2R_449467_SNP [dm3] 2R_4561962_SNP [dm6]	T	C	5.116e^-4	0.976	INTRON Stlk
3L	15899451	3L_15899451_SNP [dm3] 3L_15906351_SNP [dm6]	G	T	5.118e^-4	0.976	INTRON sff
2L	12498136	2L_12498136_SNP [dm3] 2L_12498136_SNP [dm6]	A	T	5.119e^-4	0.976	UPSTREAM t-cup INTRON bun
3R	15674137	3R_15674137_SNP [dm3] 3R_19848415_SNP [dm6]	G	A	5.123e^-4	0.976	INTRON CG4662	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	12704005	2L_12704005_SNP [dm3] 2L_12704005_SNP [dm6]	C	G	5.124e^-4	0.976	SYNONYMOUS_CODING CG5776 UPSTREAM spict	TF binding site mE1_TFBS_sens
2R	11832705	2R_11832705_SNP [dm3] 2R_15945200_SNP [dm6]	A	T	5.125e^-4	0.976	UPSTREAM mir-4919 DOWNSTREAM CG30093 INTRON Cyp4aa1
3L	16529565	3L_16529565_SNP [dm3] 3L_16536465_SNP [dm6]	G	C	5.127e^-4	0.976	INTRON CG43373
2L	8314078	2L_8314078_SNP [dm3] 2L_8314078_SNP [dm6]	C	T	5.131e^-4	0.976	SYNONYMOUS_CODING CG7806
X	8166506	X_8166506_SNP [dm3] X_8272473_SNP [dm6]	C	T	5.143e^-4	0.976	UTR_3_PRIME CG15343 UPSTREAM CG1636 DOWNSTREAM CG1632	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	20374816	2R_20374816_SNP [dm3] 2R_24487293_SNP [dm6]	T	A	5.148e^-4	0.976	INTRON CG13579	TF binding site mE1_TFBS_cad
3L	11696410	3L_11696410_SNP [dm3] 3L_11703310_SNP [dm6]	C	A	5.156e^-4	0.976	INTRON CG11658
3R	16852276	3R_16852276_SNP [dm3] 3R_21026554_SNP [dm6]	C	T	5.174e^-4	0.976	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6469115	3L_6469115_SNP [dm3] 3L_6476015_SNP [dm6]	A	G	5.175e^-4	0.976	INTRON CG42747
4	1045090	4_1045090_MNP [dm3] 4_1024464_MNP [dm6]	AGG	GCA	5.176e^-4	0.976	INTRON PlexA	transposable element FlyBase
3R	12630604	3R_12630604_SNP [dm3] 3R_16804882_SNP [dm6]	C	T	5.176e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4668994	3L_4668994_SNP [dm3] 3L_4668994_SNP [dm6]	A	G	5.178e^-4	0.976	INTRON axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16520981	3R_16520981_SNP [dm3] 3R_20695259_SNP [dm6]	C	T	5.179e^-4	0.976	INTRON Oamb
2R	8144628	2R_8144628_SNP [dm3] 2R_12257123_SNP [dm6]	G	A	5.185e^-4	0.976	UPSTREAM Vha36-2 INTERGENIC
2L	11062116	2L_11062116_DEL [dm3] 2L_11062116_DEL [dm6]	TT	T	5.187e^-4	0.976	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2260288	3L_2260288_SNP [dm3] 3L_2260288_SNP [dm6]	G	A	5.192e^-4	0.976	SYNONYMOUS_CODING oxt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14301849	2L_14301849_SNP [dm3] 2L_14301849_SNP [dm6]	T	C	5.199e^-4	0.976	INTRON wb
2L	13184950	2L_13184950_SNP [dm3] 2L_13184950_SNP [dm6]	T	C	5.205e^-4	0.976	UTR_3_PRIME CG16974 DOWNSTREAM CG5458	TF binding site mE1_TFBS_cad
3L	483650	3L_483650_SNP [dm3] 3L_483650_SNP [dm6]	G	T	5.211e^-4	0.976	INTRON klar
3L	2833477	3L_2833477_SNP [dm3] 3L_2833477_SNP [dm6]	A	G	5.224e^-4	0.976	INTRON CG43444
2R	19666703	2R_19666703_SNP [dm3] 2R_23779180_SNP [dm6]	A	C	5.224e^-4	0.976	INTRON CG9850
3R	17365855	3R_17365855_SNP [dm3] 3R_21540133_SNP [dm6]	A	T	5.225e^-4	0.976	INTERGENIC
3R	25875496	3R_25875496_SNP [dm3] 3R_30049774_SNP [dm6]	G	C	5.226e^-4	0.976	INTRON CG15528 & 1 other EXON CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26871557	3R_26871557_SNP [dm3] 3R_31045835_SNP [dm6]	T	G	5.228e^-4	0.976	UPSTREAM CG33920 INTRON CanA1	transposable element FlyBase
2R	5852823	2R_5852823_SNP [dm3] 2R_9965318_SNP [dm6]	T	C	5.229e^-4	0.976	UPSTREAM CG1418 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	16875867	3L_16875867_SNP [dm3] 3L_16882767_SNP [dm6]	G	A	5.232e^-4	0.976	INTRON Lmpt
2L	15363061	2L_15363061_SNP [dm3] 2L_15363061_SNP [dm6]	T	A	5.250e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17854863	2L_17854863_SNP [dm3] 2L_17854863_SNP [dm6]	C	A	5.251e^-4	0.976	INTRON CadN2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9816324	3L_9816324_SNP [dm3] 3L_9823224_SNP [dm6]	T	C	5.253e^-4	0.976	DOWNSTREAM Ilp5 INTRON CG43897
2R	18146527	2R_18146527_SNP [dm3] 2R_22259022_SNP [dm6]	G	A	5.272e^-4	0.976	INTRON dve
3R	14685483	3R_14685483_SNP [dm3] 3R_18859761_SNP [dm6]	C	T	5.277e^-4	0.976	INTERGENIC
X	4618436	X_4618436_SNP [dm3] X_4724403_SNP [dm6]	T	C	5.278e^-4	0.976	INTRON Proc-R
X	14668554	X_14668554_SNP [dm3] X_14774521_SNP [dm6]	A	G	5.280e^-4	0.976	UPSTREAM CG5334 INTERGENIC
2L	8335482	2L_8335482_SNP [dm3] 2L_8335482_SNP [dm6]	C	T	5.281e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5943728	2L_5943728_SNP [dm3] 2L_5943728_SNP [dm6]	C	A	5.289e^-4	0.976	UTR_5_PRIME Gpdh UPSTREAM Gpdh & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	1620056	2L_1620056_SNP [dm3] 2L_1620056_SNP [dm6]	C	T	5.298e^-4	0.976	EXON CR44603
3L	3846377	3L_3846377_SNP [dm3] 3L_3846377_SNP [dm6]	A	T	5.301e^-4	0.976	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	463605	2R_463605_SNP [dm3] 2R_4576100_SNP [dm6]	T	A	5.305e^-4	0.976	INTERGENIC
2R	4954142	2R_4954142_SNP [dm3] 2R_9066637_SNP [dm6]	G	T	5.305e^-4	0.976	INTRON ana	regulatory region REDfly_CRMs
X	3764448	X_3764448_SNP [dm3] X_3870415_SNP [dm6]	A	T	5.320e^-4	0.976	UTR_5_PRIME CG2930 INTRON yin	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	1273383	3L_1273383_SNP [dm3] 3L_1273383_SNP [dm6]	T	A	5.323e^-4	0.976	INTRON CG9134
2L	12703968	2L_12703968_SNP [dm3] 2L_12703968_SNP [dm6]	A	G	5.323e^-4	0.976	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
X	14804823	X_14804823_SNP [dm3] X_14910790_SNP [dm6]	G	A	5.324e^-4	0.976	SYNONYMOUS_CODING CG14406 DOWNSTREAM CG12398 INTRON Flo2
3L	897188	3L_897188_SNP [dm3] 3L_897188_SNP [dm6]	T	C	5.326e^-4	0.976	SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2L	16709895	2L_16709895_SNP [dm3] 2L_16709895_SNP [dm6]	A	T	5.328e^-4	0.976	INTRON CG31808
3L	22146627	3L_22146627_SNP [dm3] 3L_22153527_SNP [dm6]	G	A	5.331e^-4	0.976	INTRON olf413
2L	2314838	2L_2314838_SNP [dm3] 2L_2314838_SNP [dm6]	C	T	5.334e^-4	0.976	INTRON CG9967 & 1 other
2R	12967179	2R_12967179_SNP [dm3] 2R_17079674_SNP [dm6]	T	A	5.343e^-4	0.976	INTRON CG30460
X	18720998	X_18720998_DEL [dm3] X_18826965_DEL [dm6]	GCG	G	5.347e^-4	0.976	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
2L	15821079	2L_15821079_SNP [dm3] 2L_15821079_SNP [dm6]	A	G	5.355e^-4	0.976	INTERGENIC
3R	17860150	3R_17860150_SNP [dm3] 3R_22034428_SNP [dm6]	C	T	5.366e^-4	0.976	UTR_5_PRIME pit UPSTREAM Fadd & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	16158379	3R_16158379_DEL [dm3] 3R_20332657_DEL [dm6]	TT	T	5.368e^-4	0.976	INTERGENIC
3L	17020153	3L_17020153_SNP [dm3] 3L_17027053_SNP [dm6]	T	C	5.368e^-4	0.976	UTR_3_PRIME Fit2 UPSTREAM CG7730	TF binding site mE1_TFBS_cad
2R	16355594	2R_16355594_SNP [dm3] 2R_20468089_SNP [dm6]	C	T	5.369e^-4	0.976	INTRON CG12484
2L	4511147	2L_4511147_SNP [dm3] 2L_4511147_SNP [dm6]	G	C	5.372e^-4	0.976	NON_SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14432084	2L_14432084_SNP [dm3] 2L_14432084_SNP [dm6]	G	T	5.372e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	10559145	2L_10559145_SNP [dm3] 2L_10559145_SNP [dm6]	A	T	5.377e^-4	0.976	INTRON Trim9
2R	12624242	2R_12624242_SNP [dm3] 2R_16736737_SNP [dm6]	T	A	5.383e^-4	0.976	DOWNSTREAM CG43104 INTERGENIC
3R	23097502	3R_23097502_SNP [dm3] 3R_27271780_SNP [dm6]	C	T	5.402e^-4	0.976	UTR_5_PRIME l_3_mbt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	473170	2R_473170_SNP [dm3] 2R_4585665_SNP [dm6]	A	G	5.404e^-4	0.976	INTERGENIC
3R	19565253	3R_19565253_SNP [dm3] 3R_23739531_SNP [dm6]	C	T	5.406e^-4	0.976	INTRON Hmgcr
2R	459174	2R_459174_INS [dm3] 2R_4571669_INS [dm6]	A	ATTAAA	5.409e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
X	13333530	X_13333530_SNP [dm3] X_13439497_SNP [dm6]	T	C	5.411e^-4	0.976	INTERGENIC
X	14804760	X_14804760_SNP [dm3] X_14910727_SNP [dm6]	G	A	5.414e^-4	0.976	SYNONYMOUS_CODING CG14406 INTRON Flo2
2L	12703959	2L_12703959_SNP [dm3] 2L_12703959_SNP [dm6]	G	T	5.416e^-4	0.976	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3R	23105957	3R_23105957_SNP [dm3] 3R_27280235_SNP [dm6]	T	C	5.432e^-4	0.976	INTRON mrt
3R	15674195	3R_15674195_SNP [dm3] 3R_19848473_SNP [dm6]	T	A	5.439e^-4	0.976	INTRON CG4662	TF binding site BDTNP1_TFBS_dl
3R	19916324	3R_19916324_SNP [dm3] 3R_24090602_SNP [dm6]	C	T	5.444e^-4	0.976	INTRON 4EHP
3L	21338372	3L_21338372_SNP [dm3] 3L_21345272_SNP [dm6]	C	G	5.446e^-4	0.976	SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21338439	3L_21338439_SNP [dm3] 3L_21345339_SNP [dm6]	C	T	5.446e^-4	0.976	NON_SYNONYMOUS_CODING ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13093896	3L_13093896_SNP [dm3] 3L_13100796_SNP [dm6]	A	G	5.448e^-4	0.976	DOWNSTREAM CR44554 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16605405	3R_16605405_SNP [dm3] 3R_20779683_SNP [dm6]	A	T	5.448e^-4	0.976	UTR_5_PRIME Syp UPSTREAM Syp INTRON Syp

Missing results

By genomic position
Variant impact
Gene name

Novel_TEs phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results