DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.306e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.06308

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1840 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	1.348e^-6	0.946	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	3.118e^-6	0.946	INTRON CngA	TF binding site mE1_TFBS_inv
2L	3693283	2L_3693283_SNP [dm3] 2L_3693283_SNP [dm6]	T	G	6.535e^-6	0.946	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3L	9291423	3L_9291423_SNP [dm3] 3L_9298323_SNP [dm6]	T	C	6.614e^-6	0.946	INTERGENIC
X	555398	X_555398_SNP [dm3] X_661365_SNP [dm6]	C	G	8.816e^-6	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	9.794e^-6	0.946	INTRON CG43340
3R	23230851	3R_23230851_SNP [dm3] 3R_27405129_SNP [dm6]	C	T	9.865e^-6	0.946	INTRON side
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	1.005e^-5	0.946	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	1.034e^-5	0.946	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	1.149e^-5	0.946	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	1.180e^-5	0.946	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	1.203e^-5	0.946	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11439716	3R_11439716_SNP [dm3] 3R_15613994_SNP [dm6]	A	G	1.238e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	1.251e^-5	0.946	INTERGENIC
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	1.475e^-5	0.946	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
2R	12333720	2R_12333720_SNP [dm3] 2R_16446215_SNP [dm6]	T	A	1.569e^-5	0.946	UTR_5_PRIME CG15925
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	1.574e^-5	0.946	NON_SYNONYMOUS_CODING sti
3L	18127102	3L_18127102_SNP [dm3] 3L_18134002_SNP [dm6]	C	T	1.612e^-5	0.946	INTERGENIC
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	1.642e^-5	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	1.652e^-5	0.946	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16130617	2R_16130617_SNP [dm3] 2R_20243112_SNP [dm6]	G	T	1.723e^-5	0.946	DOWNSTREAM Efhc1.2 INTRON CG11208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8622171	X_8622171_SNP [dm3] X_8728138_SNP [dm6]	C	A	1.842e^-5	0.946	INTERGENIC
3L	8651680	3L_8651680_SNP [dm3] 3L_8658580_SNP [dm6]	G	A	1.884e^-5	0.946	INTERGENIC
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	1.988e^-5	0.946	INTERGENIC
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	2.037e^-5	0.946	DOWNSTREAM CG14476 INTERGENIC
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	2.065e^-5	0.946	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	2.093e^-5	0.946	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8651688	3L_8651688_SNP [dm3] 3L_8658588_SNP [dm6]	A	C	2.098e^-5	0.946	INTERGENIC
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	2.210e^-5	0.946	INTERGENIC
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	2.322e^-5	0.946	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	2.439e^-5	0.946	UPSTREAM CG2113 INTERGENIC
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	2.458e^-5	0.946	INTERGENIC
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	2.506e^-5	0.946	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	2.519e^-5	0.946	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6738690	2L_6738690_SNP [dm3] 2L_6738690_SNP [dm6]	T	C	2.525e^-5	0.946	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	2.633e^-5	0.946	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3693285	2L_3693285_SNP [dm3] 2L_3693285_SNP [dm6]	T	C	2.651e^-5	0.946	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3L	5191651	3L_5191651_SNP [dm3] 3L_5198551_SNP [dm6]	G	A	2.767e^-5	0.946	INTRON shep
X	5891600	X_5891600_SNP [dm3] X_5997567_SNP [dm6]	T	C	2.780e^-5	0.946	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	2.788e^-5	0.946	UTR_5_PRIME CG6841 UPSTREAM CSN1b
3R	14444033	3R_14444033_SNP [dm3] 3R_18618311_SNP [dm6]	A	G	2.830e^-5	0.946	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1560977	3L_1560977_SNP [dm3] 3L_1560977_SNP [dm6]	G	A	2.835e^-5	0.946	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3R	18184751	3R_18184751_SNP [dm3] 3R_22359029_SNP [dm6]	T	A	2.970e^-5	0.946	INTRON Sar1
3R	15164335	3R_15164335_SNP [dm3] 3R_19338613_SNP [dm6]	A	T	3.011e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	3.045e^-5	0.946	DOWNSTREAM CG34338 INTERGENIC
2R	19663848	2R_19663848_SNP [dm3] 2R_23776325_SNP [dm6]	T	G	3.173e^-5	0.946	INTRON CG9850
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	3.224e^-5	0.946	INTERGENIC
X	11185285	X_11185285_SNP [dm3] X_11291252_SNP [dm6]	G	A	3.259e^-5	0.946	INTRON CG44422
X	1783119	X_1783119_SNP [dm3] X_1889086_SNP [dm6]	T	G	3.397e^-5	0.946	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	6220596	3R_6220596_SNP [dm3] 3R_10394874_SNP [dm6]	C	T	3.553e^-5	0.946	INTRON cwo
3L	8651870	3L_8651870_SNP [dm3] 3L_8658770_SNP [dm6]	G	A	3.707e^-5	0.946	INTERGENIC
3L	12125004	3L_12125004_SNP [dm3] 3L_12131904_SNP [dm6]	T	A	3.739e^-5	0.946	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	3.820e^-5	0.946	INTERGENIC
2R	3429018	2R_3429018_SNP [dm3] 2R_7541513_SNP [dm6]	C	A	3.984e^-5	0.946	INTRON Corin
2R	3429218	2R_3429218_SNP [dm3] 2R_7541713_SNP [dm6]	C	T	3.984e^-5	0.946	INTRON Corin
2R	3429763	2R_3429763_SNP [dm3] 2R_7542258_SNP [dm6]	G	A	3.984e^-5	0.946	INTRON Corin
2R	3431865	2R_3431865_SNP [dm3] 2R_7544360_SNP [dm6]	T	A	3.984e^-5	0.946	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3433484	2R_3433484_SNP [dm3] 2R_7545979_SNP [dm6]	T	C	3.984e^-5	0.946	START_GAINED Corin UTR_5_PRIME Corin INTRON Corin
2R	3432923	2R_3432923_SNP [dm3] 2R_7545418_SNP [dm6]	T	C	4.039e^-5	0.946	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	4.096e^-5	0.946	INTRON GABA-B-R1
2R	3431923	2R_3431923_SNP [dm3] 2R_7544418_SNP [dm6]	A	C	4.175e^-5	0.946	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9037791	3L_9037791_SNP [dm3] 3L_9044691_SNP [dm6]	C	A	4.342e^-5	0.946	NON_SYNONYMOUS_CODING Doc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	3432108	2R_3432108_SNP [dm3] 2R_7544603_SNP [dm6]	C	A	4.380e^-5	0.946	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11185349	X_11185349_SNP [dm3] X_11291316_SNP [dm6]	C	T	4.383e^-5	0.946	INTRON CG44422
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	4.471e^-5	0.946	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3L	15022643	3L_15022643_SNP [dm3] 3L_15029543_SNP [dm6]	G	T	4.500e^-5	0.946	INTRON Sytbeta
3L	9291483	3L_9291483_SNP [dm3] 3L_9298383_SNP [dm6]	A	T	4.519e^-5	0.946	INTERGENIC
3L	9291486	3L_9291486_MNP [dm3] 3L_9298386_MNP [dm6]	GGC	TCA	4.519e^-5	0.946	INTERGENIC
3R	23546658	3R_23546658_SNP [dm3] 3R_27720936_SNP [dm6]	C	T	4.543e^-5	0.946	INTERGENIC
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	4.574e^-5	0.946	SYNONYMOUS_CODING bi INTRON CR32773
X	574558	X_574558_SNP [dm3] X_680525_SNP [dm6]	G	C	4.582e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	3425376	2R_3425376_SNP [dm3] 2R_7537871_SNP [dm6]	T	C	4.674e^-5	0.946	SYNONYMOUS_CODING CG2137 DOWNSTREAM CG1598	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15164315	3R_15164315_SNP [dm3] 3R_19338593_SNP [dm6]	G	C	4.842e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10185502	2L_10185502_SNP [dm3] 2L_10185502_SNP [dm6]	A	G	4.879e^-5	0.946	INTRON Sur
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	4.897e^-5	0.946	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	555157	X_555157_SNP [dm3] X_661124_SNP [dm6]	T	A	4.922e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15164351	3R_15164351_SNP [dm3] 3R_19338629_SNP [dm6]	A	T	4.940e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5774556	3R_5774556_INS [dm3] 3R_9948834_INS [dm6]	T	TTCAGCT	5.019e^-5	0.946	INTRON Glut4EF
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	5.241e^-5	0.946	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	5.267e^-5	0.946	INTERGENIC
3R	15164353	3R_15164353_SNP [dm3] 3R_19338631_SNP [dm6]	G	A	5.356e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18184732	3R_18184732_SNP [dm3] 3R_22359010_SNP [dm6]	G	A	5.365e^-5	0.946	INTRON Sar1
3L	15278056	3L_15278056_SNP [dm3] 3L_15284956_SNP [dm6]	A	G	5.421e^-5	0.946	INTERGENIC
3L	12888102	3L_12888102_INS [dm3] 3L_12895002_INS [dm6]	G	GTCG	5.504e^-5	0.946	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20135541	2L_20135541_SNP [dm3] 2L_20135541_SNP [dm6]	A	C	5.553e^-5	0.946	UPSTREAM CG10651 INTERGENIC
3R	15680094	3R_15680094_SNP [dm3] 3R_19854372_SNP [dm6]	T	A	5.560e^-5	0.946	UTR_3_PRIME CG4662 & 1 other DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	9460389	2L_9460389_SNP [dm3] 2L_9460389_SNP [dm6]	G	C	5.561e^-5	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	5.569e^-5	0.946	INTRON CngA	TF binding site mE1_TFBS_inv
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	5.755e^-5	0.946	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3R	26189151	3R_26189151_SNP [dm3] 3R_30363429_SNP [dm6]	A	G	5.809e^-5	0.946	UTR_3_PRIME hdc
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	5.816e^-5	0.946	INTERGENIC
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	5.822e^-5	0.946	INTERGENIC
3L	1560975	3L_1560975_SNP [dm3] 3L_1560975_SNP [dm6]	G	T	5.847e^-5	0.946	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
2L	1344305	2L_1344305_SNP [dm3] 2L_1344305_SNP [dm6]	G	T	5.958e^-5	0.946	UPSTREAM Cdlc2 & 1 other INTERGENIC
3R	26429714	3R_26429714_SNP [dm3] 3R_30603992_SNP [dm6]	C	A	5.977e^-5	0.946	UTR_3_PRIME CG31021 UPSTREAM PH4alphaNE3
X	17324201	X_17324201_SNP [dm3] X_17430168_SNP [dm6]	T	C	6.062e^-5	0.946	INTRON CG12994
3R	10983276	3R_10983276_SNP [dm3] 3R_15157554_SNP [dm6]	T	A	6.178e^-5	0.946	INTRON Gyc88E
3L	11867256	3L_11867256_SNP [dm3] 3L_11874156_SNP [dm6]	C	T	6.215e^-5	0.946	INTRON CG44837
X	570113	X_570113_SNP [dm3] X_676080_SNP [dm6]	A	G	6.398e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	22010133	3R_22010133_SNP [dm3] 3R_26184411_SNP [dm6]	A	T	6.445e^-5	0.946	SPLICE_SITE_REGION CG31323 UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	6.545e^-5	0.946	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19589472	3R_19589472_SNP [dm3] 3R_23763750_SNP [dm6]	C	A	6.551e^-5	0.946	UPSTREAM Lsd-1 & 1 other INTERGENIC
X	604415	X_604415_SNP [dm3] X_710382_SNP [dm6]	C	T	6.601e^-5	0.946	INTRON sdk	TF binding site BDTNP1_TFBS_twi
3L	15258041	3L_15258041_SNP [dm3] 3L_15264941_SNP [dm6]	G	A	6.604e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	6.639e^-5	0.946	INTRON PhKgamma	TF binding site mE1_TFBS_sens
3L	14574335	3L_14574335_SNP [dm3] 3L_14581235_SNP [dm6]	A	T	6.714e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	3416525	3L_3416525_SNP [dm3] 3L_3416525_SNP [dm6]	A	C	6.784e^-5	0.946	INTRON sty
3L	10392127	3L_10392127_SNP [dm3] 3L_10399027_SNP [dm6]	G	A	6.827e^-5	0.946	INTERGENIC
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	7.078e^-5	0.946	INTRON CG43174
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	7.119e^-5	0.946	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	7.191e^-5	0.946	INTERGENIC
X	517074	X_517074_DEL [dm3] X_623041_DEL [dm6]	AA	A	7.219e^-5	0.946	UTR_3_PRIME mod_r_ UPSTREAM CG13369
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	7.270e^-5	0.946	INTERGENIC
2R	15993051	2R_15993051_SNP [dm3] 2R_20105546_SNP [dm6]	A	G	7.325e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	3693352	2L_3693352_SNP [dm3] 2L_3693352_SNP [dm6]	T	C	7.360e^-5	0.946	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3R	727945	3R_727945_SNP [dm3] 3R_4902223_SNP [dm6]	G	A	7.426e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	7.440e^-5	0.946	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	7.474e^-5	0.946	INTRON gish
2L	9415630	2L_9415630_SNP [dm3] 2L_9415630_SNP [dm6]	A	T	7.582e^-5	0.946	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17594352	3L_17594352_SNP [dm3] 3L_17601252_SNP [dm6]	T	G	7.610e^-5	0.946	INTRON Eip74EF
X	17233511	X_17233511_SNP [dm3] X_17339478_SNP [dm6]	T	G	7.615e^-5	0.946	INTERGENIC
X	8622179	X_8622179_SNP [dm3] X_8728146_SNP [dm6]	G	C	7.751e^-5	0.946	INTERGENIC
X	8004979	X_8004979_SNP [dm3] X_8110946_SNP [dm6]	G	T	7.769e^-5	0.946	INTRON Gclc
3L	12214105	3L_12214105_SNP [dm3] 3L_12221005_SNP [dm6]	G	T	7.894e^-5	0.946	UTR_5_PRIME app
2R	15868038	2R_15868038_SNP [dm3] 2R_19980533_SNP [dm6]	T	A	8.049e^-5	0.946	SPLICE_SITE_REGION CG8654 UPSTREAM CG8654 INTRON CG8654
3R	23230613	3R_23230613_SNP [dm3] 3R_27404891_SNP [dm6]	T	A	8.128e^-5	0.946	INTRON side
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	8.173e^-5	0.946	DOWNSTREAM CG14476 INTERGENIC
2R	10132930	2R_10132930_SNP [dm3] 2R_14245425_SNP [dm6]	T	A	8.188e^-5	0.946	NON_SYNONYMOUS_CODING CG8503
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	8.201e^-5	0.946	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15261121	3L_15261121_SNP [dm3] 3L_15268021_SNP [dm6]	A	T	8.381e^-5	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	5979181	3R_5979181_SNP [dm3] 3R_10153459_SNP [dm6]	T	G	8.484e^-5	0.946	INTRON Invadolysin
3L	2662801	3L_2662801_SNP [dm3] 3L_2662801_SNP [dm6]	A	C	8.596e^-5	0.946	INTRON Fife & 1 other
2L	7126771	2L_7126771_SNP [dm3] 2L_7126771_SNP [dm6]	C	T	8.606e^-5	0.946	INTRON Pvf3
X	6518623	X_6518623_SNP [dm3] X_6624590_SNP [dm6]	T	C	8.627e^-5	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15652088	3R_15652088_SNP [dm3] 3R_19826366_SNP [dm6]	T	C	8.648e^-5	0.946	INTRON bnl
2R	17789158	2R_17789158_SNP [dm3] 2R_21901653_SNP [dm6]	C	T	8.687e^-5	0.946	INTRON Fili	TF binding site BDTNP1_TFBS_twi
2R	15993058	2R_15993058_INS [dm3] 2R_20105553_INS [dm6]	T	TAACGATTACTTGTAT...	8.717e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	8.767e^-5	0.946	INTERGENIC
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	8.793e^-5	0.946	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	8.899e^-5	0.946	INTRON dpr6
2L	4074973	2L_4074973_SNP [dm3] 2L_4074973_SNP [dm6]	T	A	8.914e^-5	0.946	INTRON ed & 1 other
3R	11077522	3R_11077522_DEL [dm3] 3R_15251800_DEL [dm6]	TTCT	T	8.947e^-5	0.946	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	559325	X_559325_SNP [dm3] X_665292_SNP [dm6]	C	A	9.130e^-5	0.946	INTERGENIC
3L	21603487	3L_21603487_SNP [dm3] 3L_21610387_SNP [dm6]	G	A	9.138e^-5	0.946	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	9.149e^-5	0.946	INTERGENIC
3R	19536461	3R_19536461_SNP [dm3] 3R_23710739_SNP [dm6]	T	C	9.184e^-5	0.946	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
2L	9460935	2L_9460935_SNP [dm3] 2L_9460935_SNP [dm6]	T	C	9.231e^-5	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	9.317e^-5	0.946	INTERGENIC
2R	12674955	2R_12674955_DEL [dm3] 2R_16787450_DEL [dm6]	TTTCT	T	9.351e^-5	0.946	UTR_5_PRIME CG5522 INTRON CG5522
2L	20138020	2L_20138020_SNP [dm3] 2L_20138020_SNP [dm6]	A	G	9.458e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16806855	2L_16806855_SNP [dm3] 2L_16806855_SNP [dm6]	T	A	9.545e^-5	0.946	UPSTREAM CG13272 INTRON CG13280 & 1 other
3R	22010173	3R_22010173_SNP [dm3] 3R_26184451_SNP [dm6]	C	T	9.578e^-5	0.946	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23509788	3R_23509788_SNP [dm3] 3R_27684066_SNP [dm6]	G	T	9.678e^-5	0.946	INTERGENIC
2R	15993071	2R_15993071_SNP [dm3] 2R_20105566_SNP [dm6]	C	T	9.720e^-5	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	13142683	3L_13142683_SNP [dm3] 3L_13149583_SNP [dm6]	C	T	9.787e^-5	0.946	INTERGENIC
2R	12674961	2R_12674961_DEL [dm3] 2R_16787456_DEL [dm6]	GAAGGTTGTACATGCCGA...	G	9.813e^-5	0.946	UTR_5_PRIME CG5522 INTRON CG5522
X	6518628	X_6518628_SNP [dm3] X_6624595_SNP [dm6]	C	T	1.002e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	12109214	3R_12109214_SNP [dm3] 3R_16283492_SNP [dm6]	A	G	1.013e^-4	0.946	INTRON gish
3R	17319643	3R_17319643_SNP [dm3] 3R_21493921_SNP [dm6]	A	C	1.024e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	1.025e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	12502577	X_12502577_SNP [dm3] X_12608544_SNP [dm6]	A	G	1.026e^-4	0.946	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
3L	8383762	3L_8383762_SNP [dm3] 3L_8390662_SNP [dm6]	A	G	1.029e^-4	0.946	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci
2R	6807753	2R_6807753_SNP [dm3] 2R_10920248_SNP [dm6]	T	C	1.033e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19128295	3R_19128295_INS [dm3] 3R_23302573_INS [dm6]	G	GA	1.040e^-4	0.946	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	2813208	X_2813208_SNP [dm3] X_2919175_SNP [dm6]	G	A	1.041e^-4	0.946	UPSTREAM CG3588 INTRON kirre
3L	9291482	3L_9291482_SNP [dm3] 3L_9298382_SNP [dm6]	A	T	1.041e^-4	0.946	INTERGENIC
2L	10074588	2L_10074588_SNP [dm3] 2L_10074588_SNP [dm6]	T	A	1.056e^-4	0.946	INTRON CG44153
X	16824691	X_16824691_SNP [dm3] X_16930658_SNP [dm6]	T	C	1.066e^-4	0.946	INTRON CG4928
X	4291866	X_4291866_SNP [dm3] X_4397833_SNP [dm6]	G	C	1.068e^-4	0.946	INTRON CR32773
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	1.068e^-4	0.946	INTERGENIC
3L	12087780	3L_12087780_SNP [dm3] 3L_12094680_SNP [dm6]	A	C	1.088e^-4	0.946	INTERGENIC
3L	12507391	3L_12507391_SNP [dm3] 3L_12514291_SNP [dm6]	G	A	1.089e^-4	0.946	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	1.101e^-4	0.946	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6738604	2L_6738604_SNP [dm3] 2L_6738604_SNP [dm6]	A	C	1.106e^-4	0.946	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	517010	X_517010_DEL [dm3] X_622977_DEL [dm6]	CC	C	1.107e^-4	0.946	UTR_3_PRIME mod_r_ UPSTREAM CG13369
3R	9498329	3R_9498329_SNP [dm3] 3R_13672607_SNP [dm6]	A	T	1.109e^-4	0.946	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17944474	3L_17944474_DEL [dm3] 3L_17951374_DEL [dm6]	CC	C	1.109e^-4	0.946	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	1.110e^-4	0.946	INTRON Cip4
2L	8041532	2L_8041532_SNP [dm3] 2L_8041532_SNP [dm6]	A	C	1.111e^-4	0.946	NON_SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site mE1_TFBS_sens
2L	9460394	2L_9460394_SNP [dm3] 2L_9460394_SNP [dm6]	T	A	1.119e^-4	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1797588	X_1797588_SNP [dm3] X_1903555_SNP [dm6]	C	T	1.121e^-4	0.946	UPSTREAM CG32801 DOWNSTREAM Edem1 EXON CR43864	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5888035	3R_5888035_SNP [dm3] 3R_10062313_SNP [dm6]	G	A	1.123e^-4	0.946	UPSTREAM CG33630 & 1 other EXON CR33629
3L	6503400	3L_6503400_SNP [dm3] 3L_6510300_SNP [dm6]	G	C	1.124e^-4	0.946	INTRON sfl
2R	10062573	2R_10062573_SNP [dm3] 2R_14175068_SNP [dm6]	G	A	1.143e^-4	0.946	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10062775	2R_10062775_SNP [dm3] 2R_14175270_SNP [dm6]	C	A	1.143e^-4	0.946	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17764598	3R_17764598_DEL [dm3] 3R_21938876_DEL [dm6]	GGAGGGGG	G	1.145e^-4	0.946	INTERGENIC
3L	9591541	3L_9591541_SNP [dm3] 3L_9598441_SNP [dm6]	A	T	1.146e^-4	0.946	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
2R	10111648	2R_10111648_SNP [dm3] 2R_14224143_SNP [dm6]	A	G	1.148e^-4	0.946	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	1.152e^-4	0.946	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3R	15551723	3R_15551723_SNP [dm3] 3R_19726001_SNP [dm6]	T	G	1.157e^-4	0.946	INTERGENIC
2R	4609609	2R_4609609_SNP [dm3] 2R_8722104_SNP [dm6]	A	T	1.160e^-4	0.946	UPSTREAM CG30357 INTRON CG14767	TF binding site mE1_TFBS_Trl
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	1.162e^-4	0.946	INTRON SNF4Agamma
X	8096229	X_8096229_SNP [dm3] X_8202196_SNP [dm6]	G	A	1.169e^-4	0.946	INTRON sdt	TF binding site mE1_TFBS_inv
2L	16864202	2L_16864202_SNP [dm3] 2L_16864202_SNP [dm6]	A	G	1.175e^-4	0.946	INTERGENIC
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	1.181e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	16824705	X_16824705_SNP [dm3] X_16930672_SNP [dm6]	C	T	1.183e^-4	0.946	INTRON CG4928
3L	5758869	3L_5758869_SNP [dm3] 3L_5765769_SNP [dm6]	A	T	1.189e^-4	0.946	UPSTREAM Txl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	5758937	3L_5758937_SNP [dm3] 3L_5765837_SNP [dm6]	G	T	1.189e^-4	0.946	UPSTREAM Txl & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12675068	2R_12675068_DEL [dm3] 2R_16787563_DEL [dm6]	TACATATGT	T	1.205e^-4	0.946	INTRON CG5522
3L	12153105	3L_12153105_SNP [dm3] 3L_12160005_SNP [dm6]	A	T	1.207e^-4	0.946	INTRON CG9760
3R	918152	3R_918152_DEL [dm3] 3R_5092430_DEL [dm6]	ACGCT	A	1.214e^-4	0.946	INTERGENIC
3R	15829665	3R_15829665_SNP [dm3] 3R_20003943_SNP [dm6]	C	T	1.218e^-4	0.946	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	1.226e^-4	0.946	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	9035845	3L_9035845_SNP [dm3] 3L_9042745_SNP [dm6]	A	G	1.229e^-4	0.946	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15868057	2R_15868057_SNP [dm3] 2R_19980552_SNP [dm6]	G	A	1.230e^-4	0.946	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
X	4375839	X_4375839_SNP [dm3] X_4481806_SNP [dm6]	T	C	1.232e^-4	0.946	INTRON CR32773 & 1 other
2R	16238172	2R_16238172_DEL [dm3] 2R_20350667_DEL [dm6]	TCCCT	T	1.233e^-4	0.946	INTERGENIC
X	2638444	X_2638444_SNP [dm3] X_2744411_SNP [dm6]	T	C	1.236e^-4	0.946	UPSTREAM Syx4 INTRON kirre
2R	15235960	2R_15235960_SNP [dm3] 2R_19348455_SNP [dm6]	A	G	1.247e^-4	0.946	INTRON Rgk1
3L	1121473	3L_1121473_SNP [dm3] 3L_1121473_SNP [dm6]	C	A	1.249e^-4	0.946	INTERGENIC
3R	15551743	3R_15551743_SNP [dm3] 3R_19726021_SNP [dm6]	T	A	1.252e^-4	0.946	INTERGENIC
2L	20135482	2L_20135482_SNP [dm3] 2L_20135482_SNP [dm6]	T	C	1.254e^-4	0.946	UPSTREAM CG10651 INTERGENIC
2L	721579	2L_721579_SNP [dm3] 2L_721579_SNP [dm6]	C	G	1.257e^-4	0.946	INTERGENIC
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	1.260e^-4	0.946	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	1.263e^-4	0.946	INTERGENIC
X	18185910	X_18185910_SNP [dm3] X_18291877_SNP [dm6]	A	G	1.266e^-4	0.946	UPSTREAM CR15061 INTERGENIC
X	18186036	X_18186036_SNP [dm3] X_18292003_SNP [dm6]	G	C	1.266e^-4	0.946	UPSTREAM CR15061 INTERGENIC
2L	1669112	2L_1669112_INS [dm3] 2L_1669112_INS [dm6]	T	TT	1.268e^-4	0.946	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	24049691	3R_24049691_SNP [dm3] 3R_28223969_SNP [dm6]	C	T	1.272e^-4	0.946	INTRON CG34354
2R	11411241	2R_11411241_SNP [dm3] 2R_15523736_SNP [dm6]	C	T	1.273e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22010145	3R_22010145_SNP [dm3] 3R_26184423_SNP [dm6]	A	T	1.276e^-4	0.946	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	1.280e^-4	0.946	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3R	17755460	3R_17755460_SNP [dm3] 3R_21929738_SNP [dm6]	A	T	1.282e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	20940860	2L_20940860_INS [dm3] 2L_20940860_INS [dm6]	A	ACAA	1.294e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15079495	2L_15079495_SNP [dm3] 2L_15079495_SNP [dm6]	A	G	1.318e^-4	0.946	INTRON CG15270	TF binding site BDTNP1_TFBS_twi
3L	3007835	3L_3007835_SNP [dm3] 3L_3007835_SNP [dm6]	C	T	1.320e^-4	0.946	INTRON FMRFaR
X	517233	X_517233_SNP [dm3] X_623200_SNP [dm6]	T	A	1.320e^-4	0.946	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
2L	4417105	2L_4417105_SNP [dm3] 2L_4417105_SNP [dm6]	T	C	1.324e^-4	0.946	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	10284911	X_10284911_SNP [dm3] X_10390878_SNP [dm6]	C	T	1.326e^-4	0.946	INTRON flw
2R	4139873	2R_4139873_SNP [dm3] 2R_8252368_SNP [dm6]	G	C	1.329e^-4	0.946	INTERGENIC
X	569102	X_569102_SNP [dm3] X_675069_SNP [dm6]	G	C	1.333e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25944442	3R_25944442_SNP [dm3] 3R_30118720_SNP [dm6]	C	T	1.352e^-4	0.946	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	1.358e^-4	0.946	INTERGENIC
X	10596259	X_10596259_SNP [dm3] X_10702226_SNP [dm6]	T	G	1.367e^-4	0.946	INTRON X11Lbeta
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	1.381e^-4	0.946	INTERGENIC
3R	19589473	3R_19589473_SNP [dm3] 3R_23763751_SNP [dm6]	T	C	1.390e^-4	0.946	UPSTREAM Lsd-1 & 1 other INTERGENIC
2R	11411145	2R_11411145_SNP [dm3] 2R_15523640_SNP [dm6]	G	C	1.390e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12836332	3L_12836332_SNP [dm3] 3L_12843232_SNP [dm6]	A	T	1.402e^-4	0.946	UPSTREAM CG10960 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10499505	3R_10499505_SNP [dm3] 3R_14673783_SNP [dm6]	T	A	1.424e^-4	0.946	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2R	16144469	2R_16144469_SNP [dm3] 2R_20256964_SNP [dm6]	C	T	1.429e^-4	0.946	SYNONYMOUS_CODING Ate1 UPSTREAM Hsl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10596260	X_10596260_SNP [dm3] X_10702227_SNP [dm6]	A	T	1.431e^-4	0.946	INTRON X11Lbeta
3R	23546613	3R_23546613_SNP [dm3] 3R_27720891_SNP [dm6]	A	G	1.433e^-4	0.946	INTERGENIC
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	1.442e^-4	0.946	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2812654	X_2812654_SNP [dm3] X_2918621_SNP [dm6]	C	T	1.443e^-4	0.946	INTRON kirre
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	1.447e^-4	0.946	INTRON gish	TF binding site BDTNP1_TFBS_dl
3R	17749973	3R_17749973_SNP [dm3] 3R_21924251_SNP [dm6]	A	G	1.454e^-4	0.946	INTERGENIC
3R	683384	3R_683384_SNP [dm3] 3R_4857662_SNP [dm6]	C	G	1.465e^-4	0.946	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11882002	2L_11882002_SNP [dm3] 2L_11882002_SNP [dm6]	T	A	1.467e^-4	0.946	INTRON Pde1c
2L	19895668	2L_19895668_SNP [dm3] 2L_19895668_SNP [dm6]	C	T	1.477e^-4	0.946	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3R	15551750	3R_15551750_SNP [dm3] 3R_19726028_SNP [dm6]	G	T	1.480e^-4	0.946	INTERGENIC
X	5891739	X_5891739_SNP [dm3] X_5997706_SNP [dm6]	T	C	1.490e^-4	0.946	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6372868	2R_6372868_SNP [dm3] 2R_10485363_SNP [dm6]	A	T	1.493e^-4	0.946	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	577396	X_577396_SNP [dm3] X_683363_SNP [dm6]	A	T	1.493e^-4	0.946	INTERGENIC
X	4273904	X_4273904_SNP [dm3] X_4379871_SNP [dm6]	A	T	1.495e^-4	0.946	UPSTREAM CG12688 INTERGENIC
3R	26494838	3R_26494838_SNP [dm3] 3R_30669116_SNP [dm6]	C	A	1.497e^-4	0.946	INTERGENIC
3L	22441450	3L_22441450_SNP [dm3] 3L_22448350_SNP [dm6]	A	T	1.505e^-4	0.946	INTERGENIC
X	562745	X_562745_DEL [dm3] X_668712_DEL [dm6]	CCAAAAC	C	1.507e^-4	0.946	INTERGENIC
2R	17921703	2R_17921703_DEL [dm3] 2R_22034198_DEL [dm6]	GG	G	1.508e^-4	0.946	UPSTREAM CG9308 INTRON CG34370
3L	6503375	3L_6503375_SNP [dm3] 3L_6510275_SNP [dm6]	G	T	1.511e^-4	0.946	INTRON sfl
3L	13396948	3L_13396948_SNP [dm3] 3L_13403848_SNP [dm6]	C	T	1.516e^-4	0.946	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14945787	2R_14945787_DEL [dm3] 2R_19058282_DEL [dm6]	ATATGCGAGTATA...	A	1.517e^-4	0.946	INTERGENIC
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	1.520e^-4	0.946	INTRON CG15365
3L	9890985	3L_9890985_SNP [dm3] 3L_9897885_SNP [dm6]	T	G	1.520e^-4	0.946	UPSTREAM nudE INTRON CG6707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	12480627	3R_12480627_SNP [dm3] 3R_16654905_SNP [dm6]	T	C	1.520e^-4	0.946	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	4682158	2R_4682158_SNP [dm3] 2R_8794653_SNP [dm6]	G	A	1.528e^-4	0.946	DOWNSTREAM CG8746 INTERGENIC
2L	9416620	2L_9416620_SNP [dm3] 2L_9416620_SNP [dm6]	A	G	1.537e^-4	0.946	SPLICE_SITE_REGION Mco1 UTR_5_PRIME Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6504236	3L_6504236_SNP [dm3] 3L_6511136_SNP [dm6]	G	C	1.544e^-4	0.946	INTRON sfl
3L	22441400	3L_22441400_SNP [dm3] 3L_22448300_SNP [dm6]	A	T	1.560e^-4	0.946	INTERGENIC
X	12502575	X_12502575_SNP [dm3] X_12608542_SNP [dm6]	A	T	1.563e^-4	0.946	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
2R	17718565	2R_17718565_SNP [dm3] 2R_21831060_SNP [dm6]	G	T	1.568e^-4	0.946	INTRON CG13492
2L	13961300	2L_13961300_SNP [dm3] 2L_13961300_SNP [dm6]	T	C	1.584e^-4	0.946	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14510312	3R_14510312_SNP [dm3] 3R_18684590_SNP [dm6]	A	T	1.585e^-4	0.946	SYNONYMOUS_CODING CG7708
3L	8909865	3L_8909865_SNP [dm3] 3L_8916765_SNP [dm6]	T	C	1.588e^-4	0.946	INTRON Tsp66E
3R	17749844	3R_17749844_DEL [dm3] 3R_21924122_DEL [dm6]	TT	T	1.596e^-4	0.946	INTERGENIC
X	2813194	X_2813194_SNP [dm3] X_2919161_SNP [dm6]	T	C	1.597e^-4	0.946	UPSTREAM CG3588 INTRON kirre
X	3862346	X_3862346_SNP [dm3] X_3968313_SNP [dm6]	G	A	1.602e^-4	0.946	UTR_5_PRIME CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	17777647	X_17777647_SNP [dm3] X_17883614_SNP [dm6]	G	A	1.622e^-4	0.946	UPSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	22441460	3L_22441460_SNP [dm3] 3L_22448360_SNP [dm6]	T	A	1.625e^-4	0.946	INTERGENIC
3R	8600644	3R_8600644_SNP [dm3] 3R_12774922_SNP [dm6]	C	T	1.626e^-4	0.946	INTRON beat-Vc
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	1.626e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18327550	2R_18327550_SNP [dm3] 2R_22440045_SNP [dm6]	A	G	1.631e^-4	0.946	INTERGENIC
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	1.634e^-4	0.946	INTRON sick	TF binding site mE1_TFBS_cad
3L	1267420	3L_1267420_SNP [dm3] 3L_1267420_SNP [dm6]	T	C	1.638e^-4	0.946	INTRON CG9134
2R	15197832	2R_15197832_INS [dm3] 2R_19310327_INS [dm6]	T	TT	1.639e^-4	0.946	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
3R	25874097	3R_25874097_SNP [dm3] 3R_30048375_SNP [dm6]	T	A	1.642e^-4	0.946	UTR_3_PRIME CG7943 UPSTREAM CR44046 DOWNSTREAM CG15528	TF binding site mE1_TFBS_cad
X	2776567	X_2776567_SNP [dm3] X_2882534_SNP [dm6]	C	T	1.644e^-4	0.946	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	7663534	X_7663534_SNP [dm3] X_7769501_SNP [dm6]	T	C	1.648e^-4	0.946	DOWNSTREAM CG34338 INTERGENIC
3L	12836424	3L_12836424_SNP [dm3] 3L_12843324_SNP [dm6]	T	G	1.649e^-4	0.946	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11175095	3L_11175095_SNP [dm3] 3L_11181995_SNP [dm6]	A	G	1.653e^-4	0.946	INTRON GlcAT-P
3L	15257974	3L_15257974_SNP [dm3] 3L_15264874_SNP [dm6]	G	A	1.657e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16158430	2R_16158430_SNP [dm3] 2R_20270925_SNP [dm6]	T	A	1.662e^-4	0.946	UTR_3_PRIME CG8908 DOWNSTREAM CG10444
2L	20235076	2L_20235076_SNP [dm3] 2L_20235076_SNP [dm6]	T	G	1.670e^-4	0.946	INTERGENIC
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	1.675e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	494829	X_494829_DEL [dm3] X_600796_DEL [dm6]	TGT	T	1.675e^-4	0.946	INTRON CG13366
3L	17945189	3L_17945189_SNP [dm3] 3L_17952089_SNP [dm6]	C	T	1.676e^-4	0.946	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
2R	4681303	2R_4681303_SNP [dm3] 2R_8793798_SNP [dm6]	A	C	1.682e^-4	0.946	DOWNSTREAM CG8746 INTERGENIC	TF binding site mE1_TFBS_cad
X	16731346	X_16731346_SNP [dm3] X_16837313_SNP [dm6]	A	T	1.682e^-4	0.946	DOWNSTREAM RSG7 INTERGENIC	TF binding site mE1_TFBS_eve
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	1.683e^-4	0.946	INTRON gish
2R	12675078	2R_12675078_SNP [dm3] 2R_16787573_SNP [dm6]	C	T	1.690e^-4	0.946	INTRON CG5522
X	572392	X_572392_SNP [dm3] X_678359_SNP [dm6]	C	T	1.694e^-4	0.946	INTERGENIC
X	572393	X_572393_SNP [dm3] X_678360_SNP [dm6]	G	C	1.694e^-4	0.946	INTERGENIC
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	1.703e^-4	0.946	INTERGENIC
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	1.709e^-4	0.946	UPSTREAM PH4alphaNE3 INTRON CG31021
3R	5979139	3R_5979139_SNP [dm3] 3R_10153417_SNP [dm6]	T	G	1.709e^-4	0.946	INTRON Invadolysin
2L	20246910	2L_20246910_SNP [dm3] 2L_20246910_SNP [dm6]	C	T	1.710e^-4	0.946	INTERGENIC
3L	16555013	3L_16555013_SNP [dm3] 3L_16561913_SNP [dm6]	G	A	1.711e^-4	0.946	INTERGENIC
3L	13708813	3L_13708813_SNP [dm3] 3L_13715713_SNP [dm6]	A	G	1.713e^-4	0.946	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4591881	2L_4591881_SNP [dm3] 2L_4591881_SNP [dm6]	C	A	1.713e^-4	0.946	UTR_5_PRIME dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	1.717e^-4	0.946	INTRON Tgi
3R	5887709	3R_5887709_SNP [dm3] 3R_10061987_SNP [dm6]	C	A	1.723e^-4	0.946	SPLICE_SITE_REGION CR33629 UPSTREAM CG33630 & 1 other DOWNSTREAM Npc2c INTRON CR33629
2R	17927692	2R_17927692_SNP [dm3] 2R_22040187_SNP [dm6]	G	A	1.728e^-4	0.946	UPSTREAM CG34370 INTERGENIC
3R	6584540	3R_6584540_SNP [dm3] 3R_10758818_SNP [dm6]	A	G	1.733e^-4	0.946	SPLICE_SITE_REGION CG31272 DOWNSTREAM CR45015 INTRON CG31272
2L	19915691	2L_19915691_SNP [dm3] 2L_19915691_SNP [dm6]	T	C	1.739e^-4	0.946	INTRON sick	TF binding site mE1_TFBS_bab1
X	6707699	X_6707699_SNP [dm3] X_6813666_SNP [dm6]	G	A	1.753e^-4	0.946	UTR_3_PRIME pod1 UPSTREAM iav DOWNSTREAM pod1
2R	4609226	2R_4609226_SNP [dm3] 2R_8721721_SNP [dm6]	G	C	1.753e^-4	0.946	UPSTREAM CG30357 INTRON CG14767	TF binding site mE1_TFBS_HSA
3R	19126526	3R_19126526_SNP [dm3] 3R_23300804_SNP [dm6]	A	G	1.773e^-4	0.946	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17989532	3R_17989532_DEL [dm3] 3R_22163810_DEL [dm6]	TGTT	T	1.773e^-4	0.946	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	1.778e^-4	0.946	INTRON gish
2L	6001996	2L_6001996_DEL [dm3] 2L_6001996_DEL [dm6]	TAT	T	1.783e^-4	0.946	UTR_3_PRIME Tsp26A
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	1.785e^-4	0.946	INTRON bnl
2R	10062872	2R_10062872_SNP [dm3] 2R_14175367_SNP [dm6]	A	G	1.798e^-4	0.946	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19990551	2L_19990551_SNP [dm3] 2L_19990551_SNP [dm6]	A	G	1.799e^-4	0.946	INTRON CG43861
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	1.800e^-4	0.946	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
2R	11646429	2R_11646429_SNP [dm3] 2R_15758924_SNP [dm6]	A	G	1.802e^-4	0.946	INTRON CG30089
2L	6397567	2L_6397567_SNP [dm3] 2L_6397567_SNP [dm6]	T	A	1.806e^-4	0.946	UPSTREAM CG42369 INTRON CG42368
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	1.806e^-4	0.946	INTRON TyrR
X	6518573	X_6518573_SNP [dm3] X_6624540_SNP [dm6]	A	T	1.822e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	3429714	2R_3429714_SNP [dm3] 2R_7542209_SNP [dm6]	C	T	1.824e^-4	0.946	INTRON Corin
3L	15261232	3L_15261232_SNP [dm3] 3L_15268132_SNP [dm6]	T	C	1.829e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	20188513	2R_20188513_SNP [dm3] 2R_24300990_SNP [dm6]	C	A	1.830e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	1.831e^-4	0.946	INTRON Tgi
X	570213	X_570213_SNP [dm3] X_676180_SNP [dm6]	G	A	1.832e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14425904	3L_14425904_SNP [dm3] 3L_14432804_SNP [dm6]	C	T	1.841e^-4	0.946	INTRON bbg
2R	3428368	2R_3428368_SNP [dm3] 2R_7540863_SNP [dm6]	G	A	1.843e^-4	0.946	INTRON Corin
3R	24541321	3R_24541321_SNP [dm3] 3R_28715599_SNP [dm6]	C	T	1.853e^-4	0.946	SPLICE_SITE_REGION htt SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	11136785	3L_11136785_SNP [dm3] 3L_11143685_SNP [dm6]	G	C	1.862e^-4	0.946	INTRON CG32082
3L	12153142	3L_12153142_SNP [dm3] 3L_12160042_SNP [dm6]	C	T	1.863e^-4	0.946	INTRON CG9760
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	1.880e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21400889	3L_21400889_SNP [dm3] 3L_21407789_SNP [dm6]	C	T	1.885e^-4	0.946	INTRON rgn
3L	15396743	3L_15396743_DEL [dm3] 3L_15403643_DEL [dm6]	AA	T	1.897e^-4	0.946	INTERGENIC
2L	1637279	2L_1637279_SNP [dm3] 2L_1637279_SNP [dm6]	C	A	1.908e^-4	0.946	INTERGENIC
3R	19062756	3R_19062756_SNP [dm3] 3R_23237034_SNP [dm6]	A	G	1.912e^-4	0.946	INTRON CG4467
2R	11411295	2R_11411295_SNP [dm3] 2R_15523790_SNP [dm6]	T	C	1.931e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad
3L	6504633	3L_6504633_SNP [dm3] 3L_6511533_SNP [dm6]	T	G	1.934e^-4	0.946	INTRON sfl
3R	6467228	3R_6467228_SNP [dm3] 3R_10641506_SNP [dm6]	T	A	1.934e^-4	0.946	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8104993	X_8104993_SNP [dm3] X_8210960_SNP [dm6]	T	C	1.942e^-4	0.946	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	15982780	2R_15982780_SNP [dm3] 2R_20095275_SNP [dm6]	C	T	1.944e^-4	0.946	INTERGENIC
3L	6504635	3L_6504635_SNP [dm3] 3L_6511535_SNP [dm6]	C	G	1.958e^-4	0.946	INTRON sfl
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	1.964e^-4	0.946	INTERGENIC
3L	18267380	3L_18267380_SNP [dm3] 3L_18274280_SNP [dm6]	G	A	1.984e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	17355656	2R_17355656_SNP [dm3] 2R_21468151_SNP [dm6]	C	T	1.988e^-4	0.946	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	6584636	3R_6584636_SNP [dm3] 3R_10758914_SNP [dm6]	C	T	1.988e^-4	0.946	DOWNSTREAM CR45015 INTRON CG31272	TF binding site mE1_TFBS_Kr
2L	16863739	2L_16863739_SNP [dm3] 2L_16863739_SNP [dm6]	T	A	1.998e^-4	0.946	INTERGENIC
2R	11598171	2R_11598171_SNP [dm3] 2R_15710666_SNP [dm6]	A	G	2.002e^-4	0.946	DOWNSTREAM CG30083 INTERGENIC
3R	18186935	3R_18186935_SNP [dm3] 3R_22361213_SNP [dm6]	A	T	2.005e^-4	0.946	SYNONYMOUS_CODING PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
3R	14444109	3R_14444109_SNP [dm3] 3R_18618387_SNP [dm6]	C	T	2.007e^-4	0.946	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17964922	2R_17964922_SNP [dm3] 2R_22077417_SNP [dm6]	C	T	2.012e^-4	0.946	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15275336	3L_15275336_SNP [dm3] 3L_15282236_SNP [dm6]	A	T	2.023e^-4	0.946	INTERGENIC
2L	18152799	2L_18152799_DEL [dm3] 2L_18152799_DEL [dm6]	TGAAAATATATTTT...	C	2.036e^-4	0.946	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	13890960	2L_13890960_SNP [dm3] 2L_13890960_SNP [dm6]	C	T	2.049e^-4	0.946	INTRON CenG1A	TF binding site mE1_TFBS_HSA
X	577387	X_577387_SNP [dm3] X_683354_SNP [dm6]	G	C	2.063e^-4	0.946	INTERGENIC
3R	12109372	3R_12109372_SNP [dm3] 3R_16283650_SNP [dm6]	A	T	2.065e^-4	0.946	INTRON gish
2R	12688583	2R_12688583_SNP [dm3] 2R_16801078_SNP [dm6]	G	A	2.069e^-4	0.946	INTERGENIC
3L	11736376	3L_11736376_SNP [dm3] 3L_11743276_SNP [dm6]	A	G	2.074e^-4	0.946	INTRON CG6024
X	2811419	X_2811419_SNP [dm3] X_2917386_SNP [dm6]	A	G	2.075e^-4	0.946	INTRON kirre
X	10734320	X_10734320_SNP [dm3] X_10840287_SNP [dm6]	G	A	2.079e^-4	0.946	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
3L	16349980	3L_16349980_SNP [dm3] 3L_16356880_SNP [dm6]	C	T	2.093e^-4	0.946	UPSTREAM CG45057 INTRON CG45057
X	17265226	X_17265226_INS [dm3] X_17371193_INS [dm6]	A	AA	2.098e^-4	0.946	INTERGENIC
3R	13064976	3R_13064976_SNP [dm3] 3R_17239254_SNP [dm6]	A	T	2.105e^-4	0.946	INTRON beat-IIb
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	2.123e^-4	0.946	INTRON fas
2R	16212342	2R_16212342_INS [dm3] 2R_20324837_INS [dm6]	C	CCCC	2.124e^-4	0.946	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
3R	16870232	3R_16870232_SNP [dm3] 3R_21044510_SNP [dm6]	G	A	2.129e^-4	0.946	NON_SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
3L	19673661	3L_19673661_SNP [dm3] 3L_19680561_SNP [dm6]	G	A	2.140e^-4	0.946	UPSTREAM CR44678 INTERGENIC
X	5472125	X_5472125_SNP [dm3] X_5578092_SNP [dm6]	A	G	2.147e^-4	0.946	INTERGENIC
3R	15649145	3R_15649145_SNP [dm3] 3R_19823423_SNP [dm6]	C	T	2.154e^-4	0.946	INTRON bnl
2L	4074996	2L_4074996_SNP [dm3] 2L_4074996_SNP [dm6]	T	C	2.159e^-4	0.946	INTRON ed & 1 other
2R	7918608	2R_7918608_SNP [dm3] 2R_12031103_SNP [dm6]	C	T	2.167e^-4	0.946	NON_SYNONYMOUS_CODING pds5
X	4855840	X_4855840_SNP [dm3] X_4961807_SNP [dm6]	C	T	2.186e^-4	0.946	UPSTREAM SIP3 INTRON CR44833
3R	13724775	3R_13724775_SNP [dm3] 3R_17899053_SNP [dm6]	G	A	2.188e^-4	0.946	INTRON Rim
2R	9969074	2R_9969074_SNP [dm3] 2R_14081569_SNP [dm6]	G	A	2.192e^-4	0.946	INTRON Prosap
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	2.196e^-4	0.946	DOWNSTREAM CR43964 INTERGENIC
3L	4487269	3L_4487269_SNP [dm3] 3L_4487269_SNP [dm6]	T	C	2.196e^-4	0.946	SYNONYMOUS_CODING CG13722
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	2.196e^-4	0.946	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14957599	3R_14957599_SNP [dm3] 3R_19131877_SNP [dm6]	G	A	2.204e^-4	0.946	UTR_3_PRIME CG6040 UPSTREAM Cyp12a5
3R	18895214	3R_18895214_SNP [dm3] 3R_23069492_SNP [dm6]	G	T	2.210e^-4	0.946	INTERGENIC
X	21373374	X_21373374_SNP [dm3] X_21502347_SNP [dm6]	A	G	2.214e^-4	0.946	INTRON CR45082
X	16822807	X_16822807_SNP [dm3] X_16928774_SNP [dm6]	G	T	2.249e^-4	0.946	INTRON CG4928
X	569121	X_569121_DEL [dm3] X_675088_DEL [dm6]	GGGA	G	2.255e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	2.258e^-4	0.946	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
X	517287	X_517287_SNP [dm3] X_623254_SNP [dm6]	G	A	2.261e^-4	0.946	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC	TF binding site mE1_TFBS_h
3R	17940675	3R_17940675_SNP [dm3] 3R_22114953_SNP [dm6]	A	T	2.268e^-4	0.946	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	18895211	3R_18895211_DEL [dm3] 3R_23069489_DEL [dm6]	TG	T	2.275e^-4	0.946	INTERGENIC
3R	13906137	3R_13906137_SNP [dm3] 3R_18080415_SNP [dm6]	C	T	2.281e^-4	0.946	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	4033755	2R_4033755_SNP [dm3] 2R_8146250_SNP [dm6]	A	C	2.286e^-4	0.946	UPSTREAM Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15992933	2R_15992933_DEL [dm3] 2R_20105428_DEL [dm6]	GATC	T	2.297e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	15992939	2R_15992939_SNP [dm3] 2R_20105434_SNP [dm6]	A	G	2.297e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	15992940	2R_15992940_DEL [dm3] 2R_20105435_DEL [dm6]	TG	T	2.297e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	13001546	2L_13001546_SNP [dm3] 2L_13001546_SNP [dm6]	A	T	2.330e^-4	0.946	UPSTREAM CG12404 INTRON Vha68-1	TF binding site mE1_TFBS_cad
3L	16186804	3L_16186804_SNP [dm3] 3L_16193704_SNP [dm6]	A	T	2.343e^-4	0.946	INTERGENIC
2R	13435137	2R_13435137_SNP [dm3] 2R_17547632_SNP [dm6]	T	C	2.345e^-4	0.946	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15659156	3R_15659156_SNP [dm3] 3R_19833434_SNP [dm6]	C	T	2.348e^-4	0.946	INTRON bnl
2R	15992873	2R_15992873_SNP [dm3] 2R_20105368_SNP [dm6]	T	C	2.348e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	11410983	2R_11410983_SNP [dm3] 2R_15523478_SNP [dm6]	A	G	2.348e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11352507	3L_11352507_SNP [dm3] 3L_11359407_SNP [dm6]	C	A	2.365e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	2.366e^-4	0.946	INTERGENIC
2L	6738682	2L_6738682_SNP [dm3] 2L_6738682_SNP [dm6]	A	G	2.370e^-4	0.946	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16987207	3R_16987207_SNP [dm3] 3R_21161485_SNP [dm6]	C	T	2.376e^-4	0.946	UPSTREAM CG10824 INTRON SNF4Agamma
3L	1537934	3L_1537934_SNP [dm3] 3L_1537934_SNP [dm6]	C	T	2.377e^-4	0.946	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16212987	2L_16212987_SNP [dm3] 2L_16212987_SNP [dm6]	T	C	2.410e^-4	0.946	SYNONYMOUS_CODING CG31819	TF binding site BDTNP1_TFBS_twi
2R	15480558	2R_15480558_SNP [dm3] 2R_19593053_SNP [dm6]	T	A	2.430e^-4	0.946	UPSTREAM CG16716 INTRON sm
3L	10851159	3L_10851159_SNP [dm3] 3L_10858059_SNP [dm6]	T	A	2.433e^-4	0.946	UTR_5_PRIME tna UPSTREAM tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17953311	3L_17953311_SNP [dm3] 3L_17960211_SNP [dm6]	T	A	2.435e^-4	0.946	INTRON Eip75B
X	10266921	X_10266921_SNP [dm3] X_10372888_SNP [dm6]	T	C	2.436e^-4	0.946	SYNONYMOUS_CODING CG32686 INTRON CG17841
3R	26494801	3R_26494801_SNP [dm3] 3R_30669079_SNP [dm6]	T	C	2.439e^-4	0.946	INTERGENIC
3L	5628414	3L_5628414_SNP [dm3] 3L_5635314_SNP [dm6]	G	T	2.441e^-4	0.946	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	4606768	3L_4606768_INS [dm3] 3L_4606768_INS [dm6]	C	CGTC	2.455e^-4	0.946	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14945717	2R_14945717_SNP [dm3] 2R_19058212_SNP [dm6]	A	G	2.462e^-4	0.946	INTERGENIC
3R	10910191	3R_10910191_SNP [dm3] 3R_15084469_SNP [dm6]	A	G	2.463e^-4	0.946	INTRON CG6966
X	494825	X_494825_SNP [dm3] X_600792_SNP [dm6]	A	T	2.466e^-4	0.946	INTRON CG13366
3L	8656202	3L_8656202_SNP [dm3] 3L_8663102_SNP [dm6]	A	G	2.466e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	579000	X_579000_SNP [dm3] X_684967_SNP [dm6]	G	A	2.467e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16010692	2L_16010692_SNP [dm3] 2L_16010692_SNP [dm6]	C	G	2.468e^-4	0.946	INTRON beat-Ic
2L	16212900	2L_16212900_SNP [dm3] 2L_16212900_SNP [dm6]	G	A	2.474e^-4	0.946	SYNONYMOUS_CODING CG31819
2R	5524397	2R_5524397_DEL [dm3] 2R_9636892_DEL [dm6]	AA	T	2.476e^-4	0.946	DOWNSTREAM CR44070 INTRON Mmp2
X	555621	X_555621_SNP [dm3] X_661588_SNP [dm6]	C	A	2.478e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12507406	3L_12507406_SNP [dm3] 3L_12514306_SNP [dm6]	T	G	2.485e^-4	0.946	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	17654117	X_17654117_SNP [dm3] X_17760084_SNP [dm6]	T	A	2.487e^-4	0.946	INTERGENIC
X	11185275	X_11185275_SNP [dm3] X_11291242_SNP [dm6]	A	C	2.487e^-4	0.946	INTRON CG44422
3R	19062860	3R_19062860_SNP [dm3] 3R_23237138_SNP [dm6]	C	A	2.497e^-4	0.946	INTRON CG4467
2L	16865188	2L_16865188_SNP [dm3] 2L_16865188_SNP [dm6]	G	T	2.500e^-4	0.946	INTERGENIC
X	12650309	X_12650309_SNP [dm3] X_12756276_SNP [dm6]	C	A	2.503e^-4	0.946	DOWNSTREAM ade5 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	2.507e^-4	0.946	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	6518605	X_6518605_SNP [dm3] X_6624572_SNP [dm6]	G	A	2.508e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5913663	3R_5913663_SNP [dm3] 3R_10087941_SNP [dm6]	A	T	2.511e^-4	0.946	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13709205	3L_13709205_SNP [dm3] 3L_13716105_SNP [dm6]	A	G	2.516e^-4	0.946	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20188563	2R_20188563_SNP [dm3] 2R_24301040_SNP [dm6]	C	A	2.517e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	2.528e^-4	0.946	INTRON gish
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	2.532e^-4	0.946	SYNONYMOUS_CODING plum
3R	10910192	3R_10910192_SNP [dm3] 3R_15084470_SNP [dm6]	G	T	2.536e^-4	0.946	INTRON CG6966
3R	15405960	3R_15405960_SNP [dm3] 3R_19580238_SNP [dm6]	C	T	2.546e^-4	0.946	INTRON Dys
2R	4033443	2R_4033443_SNP [dm3] 2R_8145938_SNP [dm6]	T	C	2.551e^-4	0.946	UTR_5_PRIME Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14781552	3L_14781552_SNP [dm3] 3L_14788452_SNP [dm6]	T	G	2.558e^-4	0.946	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	2.559e^-4	0.946	INTRON tok EXON snoRNA:Me18S-C1280
2R	5074884	2R_5074884_SNP [dm3] 2R_9187379_SNP [dm6]	T	A	2.562e^-4	0.946	UTR_3_PRIME CG8026 & 1 other INTRON CG8026 & 1 other
2R	1535179	2R_1535179_SNP [dm3] 2R_5647674_SNP [dm6]	C	A	2.569e^-4	0.946	INTRON CG11665	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	12032543	2R_12032543_SNP [dm3] 2R_16145038_SNP [dm6]	T	C	2.580e^-4	0.946	SYNONYMOUS_CODING Aats-cys DOWNSTREAM Ext2
3R	25948348	3R_25948348_SNP [dm3] 3R_30122626_SNP [dm6]	A	G	2.581e^-4	0.946	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1
2R	9922073	2R_9922073_DEL [dm3] 2R_14034568_DEL [dm6]	CGAAGCGAAGGC...	C	2.588e^-4	0.946	INTRON mam
2R	16212317	2R_16212317_SNP [dm3] 2R_20324812_SNP [dm6]	T	G	2.598e^-4	0.946	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	2.600e^-4	0.946	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	2.602e^-4	0.946	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13095610	2R_13095610_SNP [dm3] 2R_17208105_SNP [dm6]	A	C	2.605e^-4	0.946	INTERGENIC
X	2711939	X_2711939_SNP [dm3] X_2817906_SNP [dm6]	C	A	2.606e^-4	0.946	INTRON kirre
X	4511935	X_4511935_SNP [dm3] X_4617902_SNP [dm6]	G	A	2.607e^-4	0.946	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16289156	3R_16289156_SNP [dm3] 3R_20463434_SNP [dm6]	T	C	2.609e^-4	0.946	INTRON Gfrl
2R	15945463	2R_15945463_SNP [dm3] 2R_20057958_SNP [dm6]	T	G	2.610e^-4	0.946	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	542899	X_542899_SNP [dm3] X_648866_SNP [dm6]	G	A	2.619e^-4	0.946	UTR_3_PRIME Hmt4-20 DOWNSTREAM Hmt4-20 & 1 other
2R	19618799	2R_19618799_SNP [dm3] 2R_23731276_SNP [dm6]	G	T	2.620e^-4	0.946	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	2.627e^-4	0.946	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
X	1641480	X_1641480_SNP [dm3] X_1747447_SNP [dm6]	A	G	2.628e^-4	0.946	INTRON Scgdelta	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9416026	2L_9416026_SNP [dm3] 2L_9416026_SNP [dm6]	T	G	2.663e^-4	0.946	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	17332992	3R_17332992_SNP [dm3] 3R_21507270_SNP [dm6]	A	G	2.668e^-4	0.946	SYNONYMOUS_CODING C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7316229	3L_7316229_SNP [dm3] 3L_7323129_SNP [dm6]	G	T	2.671e^-4	0.946	UTR_5_PRIME RhoGEF4 UPSTREAM Rint1 INTRON RhoGEF4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	23680932	3R_23680932_SNP [dm3] 3R_27855210_SNP [dm6]	C	T	2.678e^-4	0.946	INTRON CG34353
2R	16212400	2R_16212400_SNP [dm3] 2R_20324895_SNP [dm6]	T	C	2.688e^-4	0.946	NON_SYNONYMOUS_CODING CG8920 DOWNSTREAM CG8920 & 1 other	TF binding site mE1_TFBS_cad
X	21337533	X_21337533_SNP [dm3] X_21466506_SNP [dm6]	A	C	2.697e^-4	0.946	DOWNSTREAM CR45507 INTERGENIC
X	5472112	X_5472112_SNP [dm3] X_5578079_SNP [dm6]	T	A	2.703e^-4	0.946	INTERGENIC
3L	7549079	3L_7549079_SNP [dm3] 3L_7555979_SNP [dm6]	A	T	2.721e^-4	0.946	SYNONYMOUS_CODING CG14837
2L	16864327	2L_16864327_SNP [dm3] 2L_16864327_SNP [dm6]	A	G	2.722e^-4	0.946	INTERGENIC
2L	19967960	2L_19967960_SNP [dm3] 2L_19967960_SNP [dm6]	T	C	2.726e^-4	0.946	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
3L	1078558	3L_1078558_SNP [dm3] 3L_1078558_SNP [dm6]	A	G	2.730e^-4	0.946	INTRON bab1	TF binding site mE1_TFBS_HSA
3R	5912935	3R_5912935_SNP [dm3] 3R_10087213_SNP [dm6]	A	G	2.731e^-4	0.946	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8553563	2L_8553563_SNP [dm3] 2L_8553563_SNP [dm6]	A	G	2.737e^-4	0.946	INTRON Sema-1a
3R	6272638	3R_6272638_SNP [dm3] 3R_10446916_SNP [dm6]	T	C	2.739e^-4	0.946	INTERGENIC
3R	26910660	3R_26910660_SNP [dm3] 3R_31084938_SNP [dm6]	G	A	2.741e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	10286162	X_10286162_SNP [dm3] X_10392129_SNP [dm6]	T	C	2.742e^-4	0.946	INTRON flw
2R	10058856	2R_10058856_SNP [dm3] 2R_14171351_SNP [dm6]	A	G	2.764e^-4	0.946	UTR_5_PRIME CG8331 UPSTREAM CG8331 INTRON CG8331	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12332352	2R_12332352_SNP [dm3] 2R_16444847_SNP [dm6]	T	C	2.765e^-4	0.946	DOWNSTREAM CG4409 INTERGENIC
2R	12332356	2R_12332356_SNP [dm3] 2R_16444851_SNP [dm6]	A	T	2.765e^-4	0.946	DOWNSTREAM CG4409 INTERGENIC
3L	7057954	3L_7057954_SNP [dm3] 3L_7064854_SNP [dm6]	C	T	2.767e^-4	0.946	INTRON CG8641
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	2.768e^-4	0.946	INTERGENIC
3L	3416470	3L_3416470_DEL [dm3] 3L_3416470_DEL [dm6]	AATTTATTTCC...	A	2.783e^-4	0.946	INTRON sty
X	567302	X_567302_SNP [dm3] X_673269_SNP [dm6]	T	A	2.790e^-4	0.946	INTERGENIC
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	2.797e^-4	0.946	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17319657	3R_17319657_SNP [dm3] 3R_21493935_SNP [dm6]	A	G	2.813e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15633268	3R_15633268_SNP [dm3] 3R_19807546_SNP [dm6]	A	C	2.816e^-4	0.946	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8334254	2L_8334254_SNP [dm3] 2L_8334254_SNP [dm6]	T	A	2.824e^-4	0.946	INTERGENIC
2R	14665497	2R_14665497_SNP [dm3] 2R_18777992_SNP [dm6]	C	G	2.826e^-4	0.946	DOWNSTREAM CR43964 INTERGENIC
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	2.828e^-4	0.946	INTERGENIC
3R	17755476	3R_17755476_SNP [dm3] 3R_21929754_SNP [dm6]	A	T	2.830e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	12055904	2R_12055904_SNP [dm3] 2R_16168399_SNP [dm6]	C	T	2.832e^-4	0.946	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10136738	2L_10136738_SNP [dm3] 2L_10136738_SNP [dm6]	A	G	2.835e^-4	0.946	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad
2L	10136741	2L_10136741_SNP [dm3] 2L_10136741_SNP [dm6]	G	A	2.835e^-4	0.946	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad
3R	16341508	3R_16341508_DEL [dm3] 3R_20515786_DEL [dm6]	ATGTATTA	A	2.836e^-4	0.946	INTERGENIC
3R	26494999	3R_26494999_SNP [dm3] 3R_30669277_SNP [dm6]	G	T	2.836e^-4	0.946	INTERGENIC
2R	13147590	2R_13147590_SNP [dm3] 2R_17260085_SNP [dm6]	C	G	2.842e^-4	0.946	INTRON mbl	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv
3R	14201214	3R_14201214_SNP [dm3] 3R_18375492_SNP [dm6]	A	T	2.842e^-4	0.946	EXON CR44946
X	517235	X_517235_INS [dm3] X_623202_INS [dm6]	A	ACAACG	2.847e^-4	0.946	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
2R	5105610	2R_5105610_SNP [dm3] 2R_9218105_SNP [dm6]	A	C	2.851e^-4	0.946	INTERGENIC
2R	11646541	2R_11646541_SNP [dm3] 2R_15759036_SNP [dm6]	A	T	2.856e^-4	0.946	INTRON CG30089
X	6518572	X_6518572_SNP [dm3] X_6624539_SNP [dm6]	G	C	2.867e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12267209	2R_12267209_SNP [dm3] 2R_16379704_SNP [dm6]	C	T	2.868e^-4	0.946	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	17146783	2R_17146783_INS [dm3] 2R_21259278_INS [dm6]	A	AG	2.870e^-4	0.946	INTRON Rgk3
2L	9059293	2L_9059293_SNP [dm3] 2L_9059293_SNP [dm6]	A	G	2.871e^-4	0.946	INTRON CG31708
X	4375870	X_4375870_SNP [dm3] X_4481837_SNP [dm6]	T	C	2.876e^-4	0.946	INTRON CR32773 & 1 other
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	2.888e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	11443571	3R_11443571_SNP [dm3] 3R_15617849_SNP [dm6]	A	G	2.893e^-4	0.946	INTERGENIC
2R	4048813	2R_4048813_SNP [dm3] 2R_8161308_SNP [dm6]	A	G	2.895e^-4	0.946	UPSTREAM CG8708 DOWNSTREAM RagC-D INTRON CG8708
X	4376251	X_4376251_SNP [dm3] X_4482218_SNP [dm6]	C	T	2.895e^-4	0.946	SYNONYMOUS_CODING bi INTRON CR32773
3R	26752159	3R_26752159_SNP [dm3] 3R_30926437_SNP [dm6]	G	T	2.902e^-4	0.946	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	5978933	3R_5978933_SNP [dm3] 3R_10153211_SNP [dm6]	C	G	2.911e^-4	0.946	INTRON Invadolysin
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	2.918e^-4	0.946	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	8944027	2R_8944027_SNP [dm3] 2R_13056522_SNP [dm6]	T	C	2.925e^-4	0.946	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3L	6511493	3L_6511493_SNP [dm3] 3L_6518393_SNP [dm6]	G	C	2.928e^-4	0.946	INTRON sfl
3L	2467158	3L_2467158_SNP [dm3] 3L_2467158_SNP [dm6]	T	C	2.932e^-4	0.946	START_GAINED CG45186 UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12718246	3L_12718246_SNP [dm3] 3L_12725146_SNP [dm6]	T	G	2.932e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5527310	X_5527310_SNP [dm3] X_5633277_SNP [dm6]	G	T	2.934e^-4	0.946	INTRON CG42492
2L	18152836	2L_18152836_SNP [dm3] 2L_18152836_SNP [dm6]	A	T	2.935e^-4	0.946	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	17927955	2R_17927955_SNP [dm3] 2R_22040450_SNP [dm6]	G	T	2.939e^-4	0.946	UPSTREAM CG34370 INTERGENIC
X	6804391	X_6804391_DEL [dm3] X_6910358_DEL [dm6]	ACCA	A	2.942e^-4	0.946	INTRON CG14431
2L	1641557	2L_1641557_SNP [dm3] 2L_1641557_SNP [dm6]	A	G	2.942e^-4	0.946	INTERGENIC
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	2.947e^-4	0.946	INTRON CG11537
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	2.953e^-4	0.946	INTERGENIC
X	11185374	X_11185374_SNP [dm3] X_11291341_SNP [dm6]	C	T	2.954e^-4	0.946	INTRON CG44422
3L	15274611	3L_15274611_SNP [dm3] 3L_15281511_SNP [dm6]	A	G	2.957e^-4	0.946	INTERGENIC
2L	2787394	2L_2787394_SNP [dm3] 2L_2787394_SNP [dm6]	T	G	2.958e^-4	0.946	INTRON Syt1
3R	16630220	3R_16630220_SNP [dm3] 3R_20804498_SNP [dm6]	C	T	2.959e^-4	0.946	INTRON Syp
3L	17610088	3L_17610088_SNP [dm3] 3L_17616988_SNP [dm6]	T	C	2.959e^-4	0.946	INTRON Eip74EF
3L	15509151	3L_15509151_SNP [dm3] 3L_15516051_SNP [dm6]	A	C	2.962e^-4	0.946	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	10286224	X_10286224_SNP [dm3] X_10392191_SNP [dm6]	A	T	2.962e^-4	0.946	INTRON flw
X	6518593	X_6518593_SNP [dm3] X_6624560_SNP [dm6]	T	C	2.965e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	573923	X_573923_SNP [dm3] X_679890_SNP [dm6]	A	C	2.978e^-4	0.946	INTERGENIC
X	15808618	X_15808618_SNP [dm3] X_15914585_SNP [dm6]	A	T	2.978e^-4	0.946	INTRON CG8909
3L	14804733	3L_14804733_SNP [dm3] 3L_14811633_SNP [dm6]	C	T	2.983e^-4	0.946	INTRON CG17839
3L	12015695	3L_12015695_SNP [dm3] 3L_12022595_SNP [dm6]	T	G	2.987e^-4	0.946	INTRON rols
2R	19475561	2R_19475561_SNP [dm3] 2R_23588038_SNP [dm6]	T	G	2.994e^-4	0.946	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	18898719	3L_18898719_INS [dm3] 3L_18905619_INS [dm6]	A	ATCTACC	3.004e^-4	0.946	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	18898724	3L_18898724_SNP [dm3] 3L_18905624_SNP [dm6]	A	G	3.004e^-4	0.946	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3R	24213262	3R_24213262_SNP [dm3] 3R_28387540_SNP [dm6]	G	A	3.005e^-4	0.946	INTERGENIC
X	1780516	X_1780516_SNP [dm3] X_1886483_SNP [dm6]	G	T	3.006e^-4	0.946	NON_SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17927532	2R_17927532_SNP [dm3] 2R_22040027_SNP [dm6]	G	A	3.011e^-4	0.946	UPSTREAM CG34370 INTERGENIC
X	625417	X_625417_SNP [dm3] X_731384_SNP [dm6]	T	C	3.022e^-4	0.946	INTRON sdk
3L	15508763	3L_15508763_SNP [dm3] 3L_15515663_SNP [dm6]	A	T	3.035e^-4	0.946	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	6518558	X_6518558_SNP [dm3] X_6624525_SNP [dm6]	C	T	3.036e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6506655	3L_6506655_SNP [dm3] 3L_6513555_SNP [dm6]	A	T	3.036e^-4	0.946	INTRON sfl
2R	15244958	2R_15244958_SNP [dm3] 2R_19357453_SNP [dm6]	G	A	3.042e^-4	0.946	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12090909	3L_12090909_SNP [dm3] 3L_12097809_SNP [dm6]	C	A	3.052e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	1763450	3R_1763450_SNP [dm3] 3R_5937728_SNP [dm6]	G	C	3.053e^-4	0.946	INTRON CG34113
2L	8330528	2L_8330528_SNP [dm3] 2L_8330528_SNP [dm6]	A	G	3.058e^-4	0.946	INTRON CG14275
2L	8244757	2L_8244757_SNP [dm3] 2L_8244757_SNP [dm6]	G	A	3.063e^-4	0.946	UPSTREAM CG43057 INTRON CG8086
X	4197452	X_4197452_SNP [dm3] X_4303419_SNP [dm6]	A	G	3.065e^-4	0.946	INTERGENIC
3R	16729882	3R_16729882_SNP [dm3] 3R_20904160_SNP [dm6]	C	T	3.082e^-4	0.946	SYNONYMOUS_CODING CG5621 DOWNSTREAM TotX
3L	10932636	3L_10932636_SNP [dm3] 3L_10939536_SNP [dm6]	A	G	3.083e^-4	0.946	INTERGENIC
2L	9461571	2L_9461571_SNP [dm3] 2L_9461571_SNP [dm6]	A	G	3.102e^-4	0.946	NON_SYNONYMOUS_CODING numb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	3.111e^-4	0.946	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	489296	2L_489296_SNP [dm3] 2L_489296_SNP [dm6]	T	A	3.113e^-4	0.946	INTRON ush
2R	12131070	2R_12131070_SNP [dm3] 2R_16243565_SNP [dm6]	T	A	3.115e^-4	0.946	UTR_3_PRIME CngA	TF binding site mE1_TFBS_inv
2L	9460410	2L_9460410_SNP [dm3] 2L_9460410_SNP [dm6]	T	C	3.123e^-4	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3434124	2R_3434124_SNP [dm3] 2R_7546619_SNP [dm6]	A	C	3.124e^-4	0.946	INTRON Corin
2R	3462121	2R_3462121_DEL [dm3] 2R_7574616_DEL [dm6]	AA	A	3.125e^-4	0.946	INTRON Vps13
2L	1629682	2L_1629682_SNP [dm3] 2L_1629682_SNP [dm6]	T	A	3.129e^-4	0.946	INTERGENIC
2R	12267078	2R_12267078_SNP [dm3] 2R_16379573_SNP [dm6]	G	C	3.130e^-4	0.946	UPSTREAM CG43187 EXON CR45316 & 1 other
2R	16724027	2R_16724027_SNP [dm3] 2R_20836522_SNP [dm6]	C	T	3.135e^-4	0.946	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	17264341	3L_17264341_SNP [dm3] 3L_17271241_SNP [dm6]	G	A	3.139e^-4	0.946	INTERGENIC
2L	4851363	2L_4851363_SNP [dm3] 2L_4851363_SNP [dm6]	C	A	3.139e^-4	0.946	UPSTREAM mRpS2 INTRON Mon1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	20117702	2R_20117702_SNP [dm3] 2R_24230179_SNP [dm6]	A	T	3.139e^-4	0.946	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	3428621	2R_3428621_SNP [dm3] 2R_7541116_SNP [dm6]	C	T	3.145e^-4	0.946	INTRON Corin
3R	25944722	3R_25944722_SNP [dm3] 3R_30119000_SNP [dm6]	G	T	3.146e^-4	0.946	INTRON sima
2R	17927970	2R_17927970_SNP [dm3] 2R_22040465_SNP [dm6]	C	T	3.148e^-4	0.946	UPSTREAM CG34370 INTERGENIC
3R	14201216	3R_14201216_SNP [dm3] 3R_18375494_SNP [dm6]	T	G	3.153e^-4	0.946	EXON CR44946
2L	14750274	2L_14750274_SNP [dm3] 2L_14750274_SNP [dm6]	A	C	3.153e^-4	0.946	INTERGENIC
3R	22986996	3R_22986996_SNP [dm3] 3R_27161274_SNP [dm6]	A	C	3.160e^-4	0.946	UTR_5_PRIME CG5909
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	3.167e^-4	0.946	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4417109	2L_4417109_SNP [dm3] 2L_4417109_SNP [dm6]	T	C	3.168e^-4	0.946	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4682522	2R_4682522_SNP [dm3] 2R_8795017_SNP [dm6]	G	A	3.174e^-4	0.946	INTERGENIC
X	19238859	X_19238859_INS [dm3] X_19344826_INS [dm6]	T	TT	3.179e^-4	0.946	INTRON nAChRalpha7
3L	13292673	3L_13292673_SNP [dm3] 3L_13299573_SNP [dm6]	G	T	3.179e^-4	0.946	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
X	6518568	X_6518568_SNP [dm3] X_6624535_SNP [dm6]	A	C	3.187e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518595	X_6518595_SNP [dm3] X_6624562_SNP [dm6]	A	C	3.188e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	4420274	3R_4420274_SNP [dm3] 3R_8594552_SNP [dm6]	T	A	3.193e^-4	0.946	INTRON 5-HT2B
3L	8272317	3L_8272317_SNP [dm3] 3L_8279217_SNP [dm6]	C	A	3.194e^-4	0.946	SPLICE_SITE_REGION Dscam4 INTRON Dscam4
3L	10049646	3L_10049646_DEL [dm3] 3L_10056546_DEL [dm6]	GT	G	3.200e^-4	0.946	INTRON dpr6
3L	12718258	3L_12718258_SNP [dm3] 3L_12725158_SNP [dm6]	G	A	3.204e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12502633	X_12502633_SNP [dm3] X_12608600_SNP [dm6]	T	A	3.205e^-4	0.946	DOWNSTREAM Sec16 INTRON Sec16
3R	5887796	3R_5887796_DEL [dm3] 3R_10062074_DEL [dm6]	GG	G	3.207e^-4	0.946	UPSTREAM CG33630 & 1 other DOWNSTREAM Npc2c EXON CR33629
2L	9463981	2L_9463981_SNP [dm3] 2L_9463981_SNP [dm6]	A	G	3.208e^-4	0.946	UTR_3_PRIME numb DOWNSTREAM numb
3L	15261587	3L_15261587_SNP [dm3] 3L_15268487_SNP [dm6]	A	T	3.208e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11411259	2R_11411259_SNP [dm3] 2R_15523754_SNP [dm6]	T	C	3.212e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad
3L	15275385	3L_15275385_SNP [dm3] 3L_15282285_SNP [dm6]	G	T	3.215e^-4	0.946	INTERGENIC
2L	19970248	2L_19970248_SNP [dm3] 2L_19970248_SNP [dm6]	A	G	3.215e^-4	0.946	UTR_3_PRIME CG43861 INTRON CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1262305	3L_1262305_SNP [dm3] 3L_1262305_SNP [dm6]	C	T	3.218e^-4	0.946	INTRON CG9134
2L	2787416	2L_2787416_SNP [dm3] 2L_2787416_SNP [dm6]	A	G	3.242e^-4	0.946	INTRON Syt1
2R	14166202	2R_14166202_SNP [dm3] 2R_18278697_SNP [dm6]	G	A	3.247e^-4	0.946	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
X	2811294	X_2811294_SNP [dm3] X_2917261_SNP [dm6]	A	G	3.256e^-4	0.946	INTRON kirre
3R	16870238	3R_16870238_SNP [dm3] 3R_21044516_SNP [dm6]	C	T	3.260e^-4	0.946	NON_SYNONYMOUS_CODING CG12278 DOWNSTREAM CG31189
X	571960	X_571960_SNP [dm3] X_677927_SNP [dm6]	C	T	3.266e^-4	0.946	INTERGENIC
2L	12931039	2L_12931039_SNP [dm3] 2L_12931039_SNP [dm6]	C	T	3.277e^-4	0.946	UPSTREAM CR44183 INTERGENIC
3R	19739681	3R_19739681_SNP [dm3] 3R_23913959_SNP [dm6]	G	T	3.279e^-4	0.946	INTRON sba	TF binding site mE1_TFBS_Kr
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	3.281e^-4	0.946	INTRON 5-HT1A
2R	16136117	2R_16136117_SNP [dm3] 2R_20248612_SNP [dm6]	G	A	3.282e^-4	0.946	SYNONYMOUS_CODING CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	3.287e^-4	0.946	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2467170	3L_2467170_SNP [dm3] 3L_2467170_SNP [dm6]	G	A	3.290e^-4	0.946	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15451568	2R_15451568_SNP [dm3] 2R_19564063_SNP [dm6]	T	A	3.293e^-4	0.946	DOWNSTREAM tRNA:CR33535 INTRON sm
3R	18215091	3R_18215091_SNP [dm3] 3R_22389369_SNP [dm6]	T	C	3.301e^-4	0.946	START_GAINED CG5379 UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
X	13391000	X_13391000_INS [dm3] X_13496967_INS [dm6]	A	AAAGGGGGA	3.301e^-4	0.946	INTRON Neto
X	5892191	X_5892191_SNP [dm3] X_5998158_SNP [dm6]	A	G	3.305e^-4	0.946	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl
3L	11037099	3L_11037099_SNP [dm3] 3L_11043999_SNP [dm6]	A	T	3.306e^-4	0.946	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	3.307e^-4	0.946	INTRON CG43729
3R	26893396	3R_26893396_INS [dm3] 3R_31067674_INS [dm6]	G	GG	3.311e^-4	0.946	INTRON Sox100B
3R	861255	3R_861255_SNP [dm3] 3R_5035533_SNP [dm6]	G	A	3.318e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12021565	2R_12021565_SNP [dm3] 2R_16134060_SNP [dm6]	T	A	3.329e^-4	0.946	INTRON spin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6584584	3R_6584584_SNP [dm3] 3R_10758862_SNP [dm6]	A	C	3.334e^-4	0.946	DOWNSTREAM CR45015 INTRON CG31272
2L	7303684	2L_7303684_SNP [dm3] 2L_7303684_SNP [dm6]	A	G	3.343e^-4	0.946	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	3.343e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	20115444	2R_20115444_SNP [dm3] 2R_24227921_SNP [dm6]	A	G	3.344e^-4	0.946	INTRON CG30419
2R	13610581	2R_13610581_SNP [dm3] 2R_17723076_SNP [dm6]	T	C	3.347e^-4	0.946	UTR_3_PRIME CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2R	16113650	2R_16113650_MNP [dm3] 2R_20226145_MNP [dm6]	CTATAA	GGCGTC	3.349e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7123071	3L_7123071_SNP [dm3] 3L_7129971_SNP [dm6]	A	G	3.350e^-4	0.946	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC
3L	6134100	3L_6134100_INS [dm3] 3L_6141000_INS [dm6]	A	AAAAACGATTTTTTTA...	3.360e^-4	0.946	DOWNSTREAM Cpr65Aw INTERGENIC
X	19611081	X_19611081_SNP [dm3] X_19717048_SNP [dm6]	C	T	3.360e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9035949	3L_9035949_SNP [dm3] 3L_9042849_SNP [dm6]	T	C	3.361e^-4	0.946	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10803140	2L_10803140_SNP [dm3] 2L_10803140_SNP [dm6]	C	T	3.363e^-4	0.946	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18582152	3R_18582152_SNP [dm3] 3R_22756430_SNP [dm6]	C	T	3.365e^-4	0.946	INTRON Usp12-46 & 1 other
3L	15261499	3L_15261499_SNP [dm3] 3L_15268399_SNP [dm6]	C	T	3.375e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	13570878	3R_13570878_SNP [dm3] 3R_17745156_SNP [dm6]	T	C	3.376e^-4	0.946	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12810644	3L_12810644_SNP [dm3] 3L_12817544_SNP [dm6]	G	T	3.391e^-4	0.946	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA
2R	12332350	2R_12332350_SNP [dm3] 2R_16444845_SNP [dm6]	T	A	3.402e^-4	0.946	UTR_3_PRIME CG4409
3L	15261332	3L_15261332_SNP [dm3] 3L_15268232_SNP [dm6]	G	C	3.406e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	8549755	3R_8549755_INS [dm3] 3R_12724033_INS [dm6]	A	AA	3.409e^-4	0.946	INTERGENIC
3L	20437482	3L_20437482_SNP [dm3] 3L_20444382_SNP [dm6]	G	T	3.414e^-4	0.946	UPSTREAM CG5910 INTRON CG5910
2R	4434330	2R_4434330_SNP [dm3] 2R_8546825_SNP [dm6]	C	T	3.417e^-4	0.946	INTERGENIC
3R	23546624	3R_23546624_SNP [dm3] 3R_27720902_SNP [dm6]	C	G	3.430e^-4	0.946	INTERGENIC
X	12169425	X_12169425_SNP [dm3] X_12275392_SNP [dm6]	C	T	3.437e^-4	0.946	DOWNSTREAM CG45603 INTRON Ten-a
2R	12177921	2R_12177921_SNP [dm3] 2R_16290416_SNP [dm6]	T	G	3.446e^-4	0.946	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	3.459e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	9969054	2R_9969054_SNP [dm3] 2R_14081549_SNP [dm6]	T	G	3.459e^-4	0.946	INTRON Prosap
2L	13536793	2L_13536793_SNP [dm3] 2L_13536793_SNP [dm6]	A	C	3.471e^-4	0.946	INTRON B4
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	3.478e^-4	0.946	INTERGENIC
3R	14971100	3R_14971100_SNP [dm3] 3R_19145378_SNP [dm6]	C	T	3.478e^-4	0.946	INTRON Ppcs
3L	15261559	3L_15261559_SNP [dm3] 3L_15268459_SNP [dm6]	T	G	3.487e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19475912	3R_19475912_SNP [dm3] 3R_23650190_SNP [dm6]	A	G	3.489e^-4	0.946	INTRON CG31145
3L	3632980	3L_3632980_INS [dm3] 3L_3632980_INS [dm6]	G	GA	3.490e^-4	0.946	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14574253	3L_14574253_SNP [dm3] 3L_14581153_SNP [dm6]	A	C	3.498e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	4705316	3R_4705316_SNP [dm3] 3R_8879594_SNP [dm6]	A	G	3.508e^-4	0.946	INTRON pyd
2L	8333409	2L_8333409_SNP [dm3] 2L_8333409_SNP [dm6]	T	C	3.523e^-4	0.946	DOWNSTREAM CG14275 INTERGENIC
3L	14480930	3L_14480930_SNP [dm3] 3L_14487830_SNP [dm6]	A	G	3.538e^-4	0.946	INTRON bbg
2R	12678800	2R_12678800_SNP [dm3] 2R_16791295_SNP [dm6]	T	C	3.538e^-4	0.946	SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14666312	2R_14666312_SNP [dm3] 2R_18778807_SNP [dm6]	G	A	3.538e^-4	0.946	INTERGENIC
X	18024351	X_18024351_INS [dm3] X_18130318_INS [dm6]	T	TAACTGTGTGCGATTTACGA...	3.544e^-4	0.946	UPSTREAM CG43133 DOWNSTREAM ari-1 INTERGENIC
X	8621349	X_8621349_SNP [dm3] X_8727316_SNP [dm6]	A	C	3.550e^-4	0.946	INTERGENIC
3R	17764263	3R_17764263_DEL [dm3] 3R_21938541_DEL [dm6]	TT	T	3.555e^-4	0.946	INTERGENIC
2R	12808402	2R_12808402_SNP [dm3] 2R_16920897_SNP [dm6]	C	G	3.563e^-4	0.946	INTERGENIC
3R	5979102	3R_5979102_SNP [dm3] 3R_10153380_SNP [dm6]	T	A	3.563e^-4	0.946	INTRON Invadolysin
2R	6852031	2R_6852031_SNP [dm3] 2R_10964526_SNP [dm6]	C	T	3.565e^-4	0.946	INTERGENIC
2L	20146645	2L_20146645_SNP [dm3] 2L_20146645_SNP [dm6]	C	T	3.569e^-4	0.946	INTERGENIC
3L	7315446	3L_7315446_SNP [dm3] 3L_7322346_SNP [dm6]	A	G	3.576e^-4	0.946	SYNONYMOUS_CODING RhoGEF4	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
2R	3445786	2R_3445786_SNP [dm3] 2R_7558281_SNP [dm6]	C	T	3.579e^-4	0.946	SYNONYMOUS_CODING Corin	TF binding site mE1_TFBS_chinmo
2R	11635946	2R_11635946_SNP [dm3] 2R_15748441_SNP [dm6]	C	T	3.579e^-4	0.946	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	3.580e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3094279	2L_3094279_SNP [dm3] 2L_3094279_SNP [dm6]	T	G	3.588e^-4	0.946	NON_SYNONYMOUS_CODING toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4511936	X_4511936_SNP [dm3] X_4617903_SNP [dm6]	A	T	3.588e^-4	0.946	UTR_5_PRIME peb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11409321	2R_11409321_SNP [dm3] 2R_15521816_SNP [dm6]	C	A	3.589e^-4	0.946	INTRON Khc-73
3L	5731473	3L_5731473_SNP [dm3] 3L_5738373_SNP [dm6]	T	C	3.593e^-4	0.946	INTRON sif
3R	13064970	3R_13064970_INS [dm3] 3R_17239248_INS [dm6]	T	TT	3.620e^-4	0.946	INTRON beat-IIb
2L	13890748	2L_13890748_SNP [dm3] 2L_13890748_SNP [dm6]	C	A	3.625e^-4	0.946	INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8344879	2L_8344879_SNP [dm3] 2L_8344879_SNP [dm6]	G	C	3.630e^-4	0.946	DOWNSTREAM CG14273 EXON CR45371	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	3.635e^-4	0.946	INTERGENIC
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	3.641e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	412924	2R_412924_SNP [dm3] 2R_4525419_SNP [dm6]	G	A	3.643e^-4	0.946	INTERGENIC	transposable element FlyBase
3R	25407743	3R_25407743_SNP [dm3] 3R_29582021_SNP [dm6]	G	C	3.658e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	12364246	2R_12364246_SNP [dm3] 2R_16476741_SNP [dm6]	C	T	3.685e^-4	0.946	INTERGENIC
2L	10086228	2L_10086228_SNP [dm3] 2L_10086228_SNP [dm6]	C	G	3.692e^-4	0.946	SYNONYMOUS_CODING CG44153
3R	1735850	3R_1735850_SNP [dm3] 3R_5910128_SNP [dm6]	C	T	3.696e^-4	0.946	INTRON CG34113
3R	26191355	3R_26191355_SNP [dm3] 3R_30365633_SNP [dm6]	C	A	3.712e^-4	0.946	UTR_3_PRIME hdc
2R	14353980	2R_14353980_SNP [dm3] 2R_18466475_SNP [dm6]	T	A	3.712e^-4	0.946	INTRON CG30116
3L	10079831	3L_10079831_SNP [dm3] 3L_10086731_SNP [dm6]	A	G	3.716e^-4	0.946	DOWNSTREAM CG14160 INTRON dpr6
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	3.721e^-4	0.946	INTRON rk
2R	15490600	2R_15490600_SNP [dm3] 2R_19603095_SNP [dm6]	A	T	3.722e^-4	0.946	UPSTREAM CR44473 INTRON sm
X	4083839	X_4083839_SNP [dm3] X_4189806_SNP [dm6]	C	T	3.724e^-4	0.946	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	8831956	X_8831956_SNP [dm3] X_8937923_SNP [dm6]	C	T	3.725e^-4	0.946	INTRON rdgA
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	3.726e^-4	0.946	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	12864217	2R_12864217_SNP [dm3] 2R_16976712_SNP [dm6]	C	G	3.733e^-4	0.946	INTRON Cbp53E
3R	18499204	3R_18499204_SNP [dm3] 3R_22673482_SNP [dm6]	T	A	3.735e^-4	0.946	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	2466953	3L_2466953_SNP [dm3] 3L_2466953_SNP [dm6]	T	G	3.743e^-4	0.946	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6010542	3R_6010542_SNP [dm3] 3R_10184820_SNP [dm6]	A	C	3.746e^-4	0.946	INTRON CG12814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4197449	X_4197449_INS [dm3] X_4303416_INS [dm6]	G	GTAGG	3.762e^-4	0.946	INTERGENIC
3R	17750276	3R_17750276_SNP [dm3] 3R_21924554_SNP [dm6]	C	T	3.769e^-4	0.946	INTERGENIC
3R	1686184	3R_1686184_SNP [dm3] 3R_5860462_SNP [dm6]	A	T	3.771e^-4	0.946	INTRON CG2017
X	11189143	X_11189143_SNP [dm3] X_11295110_SNP [dm6]	T	C	3.774e^-4	0.946	INTRON CG44422
2L	18390516	2L_18390516_DEL [dm3] 2L_18390516_DEL [dm6]	TT	T	3.780e^-4	0.946	UTR_3_PRIME Fas3 INTRON Fas3
3L	14639819	3L_14639819_INS [dm3] 3L_14646719_INS [dm6]	C	CC	3.786e^-4	0.946	INTRON dlp
2R	3442639	2R_3442639_SNP [dm3] 2R_7555134_SNP [dm6]	G	A	3.790e^-4	0.946	NON_SYNONYMOUS_CODING Corin
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	3.794e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	8455607	3R_8455607_SNP [dm3] 3R_12629885_SNP [dm6]	T	C	3.799e^-4	0.946	UTR_3_PRIME Snx3 UPSTREAM Not10	TF binding site BDTNP1_TFBS_dl
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	3.806e^-4	0.946	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	3.806e^-4	0.946	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	3.806e^-4	0.946	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4417107	2L_4417107_SNP [dm3] 2L_4417107_SNP [dm6]	T	A	3.807e^-4	0.946	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2R	8280486	2R_8280486_SNP [dm3] 2R_12392981_SNP [dm6]	C	T	3.809e^-4	0.946	UPSTREAM Or49a INTERGENIC
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	3.819e^-4	0.946	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	16317714	3L_16317714_SNP [dm3] 3L_16324614_SNP [dm6]	G	A	3.837e^-4	0.946	DOWNSTREAM CG13040 & 1 other INTERGENIC
3R	5770045	3R_5770045_SNP [dm3] 3R_9944323_SNP [dm6]	C	G	3.846e^-4	0.946	UTR_3_PRIME Glut4EF INTRON Glut4EF
2L	9584637	2L_9584637_SNP [dm3] 2L_9584637_SNP [dm6]	A	G	3.848e^-4	0.946	DOWNSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12569553	3L_12569553_SNP [dm3] 3L_12576453_SNP [dm6]	G	A	3.848e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	3.851e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	17798610	2L_17798610_SNP [dm3] 2L_17798610_SNP [dm6]	C	G	3.858e^-4	0.946	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
X	17075783	X_17075783_SNP [dm3] X_17181750_SNP [dm6]	T	C	3.858e^-4	0.946	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17264218	3L_17264218_SNP [dm3] 3L_17271118_SNP [dm6]	C	T	3.862e^-4	0.946	INTERGENIC
3R	15633376	3R_15633376_SNP [dm3] 3R_19807654_SNP [dm6]	T	C	3.869e^-4	0.946	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	12688444	2R_12688444_SNP [dm3] 2R_16800939_SNP [dm6]	G	A	3.878e^-4	0.946	INTERGENIC
2L	6036815	2L_6036815_SNP [dm3] 2L_6036815_SNP [dm6]	C	G	3.890e^-4	0.946	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6036816	2L_6036816_SNP [dm3] 2L_6036816_SNP [dm6]	G	A	3.890e^-4	0.946	START_GAINED mtm UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6567875	2R_6567875_SNP [dm3] 2R_10680370_SNP [dm6]	C	A	3.894e^-4	0.946	INTRON stan	TF binding site mE1_TFBS_Trl
2R	15853255	2R_15853255_SNP [dm3] 2R_19965750_SNP [dm6]	C	T	3.895e^-4	0.946	INTERGENIC
2L	20246915	2L_20246915_SNP [dm3] 2L_20246915_SNP [dm6]	G	T	3.903e^-4	0.946	INTERGENIC
3R	22612979	3R_22612979_SNP [dm3] 3R_26787257_SNP [dm6]	C	T	3.910e^-4	0.946	INTERGENIC
X	569101	X_569101_SNP [dm3] X_675068_SNP [dm6]	C	T	3.912e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4504982	3L_4504982_SNP [dm3] 3L_4504982_SNP [dm6]	T	C	3.915e^-4	0.946	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
3R	22299796	3R_22299796_SNP [dm3] 3R_26474074_SNP [dm6]	G	A	3.926e^-4	0.946	SYNONYMOUS_CODING plum
2R	14945694	2R_14945694_SNP [dm3] 2R_19058189_SNP [dm6]	G	A	3.929e^-4	0.946	INTERGENIC
X	2811079	X_2811079_SNP [dm3] X_2917046_SNP [dm6]	T	C	3.929e^-4	0.946	INTRON kirre
X	6518596	X_6518596_SNP [dm3] X_6624563_SNP [dm6]	G	A	3.933e^-4	0.946	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16770678	3R_16770678_SNP [dm3] 3R_20944956_SNP [dm6]	A	G	3.934e^-4	0.946	INTRON CG31191
2L	3557563	2L_3557563_SNP [dm3] 2L_3557563_SNP [dm6]	T	A	3.945e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	19309314	3R_19309314_SNP [dm3] 3R_23483592_SNP [dm6]	C	T	3.950e^-4	0.946	UPSTREAM Ir94g DOWNSTREAM Ir94f INTERGENIC
3R	10315159	3R_10315159_SNP [dm3] 3R_14489437_SNP [dm6]	C	T	3.953e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
X	8779105	X_8779105_SNP [dm3] X_8885072_SNP [dm6]	A	G	3.970e^-4	0.946	INTRON Moe
2R	10581646	2R_10581646_SNP [dm3] 2R_14694141_SNP [dm6]	G	A	3.978e^-4	0.946	INTRON mspo
3R	18485025	3R_18485025_SNP [dm3] 3R_22659303_SNP [dm6]	T	C	4.000e^-4	0.946	INTRON CG45058
3R	26921667	3R_26921667_SNP [dm3] 3R_31095945_SNP [dm6]	C	G	4.013e^-4	0.946	INTRON CG11317
2L	13913327	2L_13913327_DEL [dm3] 2L_13913327_DEL [dm6]	ATTGA	A	4.018e^-4	0.946	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
X	2813170	X_2813170_SNP [dm3] X_2919137_SNP [dm6]	A	G	4.019e^-4	0.946	UPSTREAM CG3588 INTRON kirre
3R	13828062	3R_13828062_SNP [dm3] 3R_18002340_SNP [dm6]	A	T	4.030e^-4	0.946	INTRON cpo
3L	6501408	3L_6501408_SNP [dm3] 3L_6508308_SNP [dm6]	G	A	4.036e^-4	0.946	INTRON sfl
X	557827	X_557827_SNP [dm3] X_663794_SNP [dm6]	A	T	4.037e^-4	0.946	INTERGENIC
3R	13064975	3R_13064975_SNP [dm3] 3R_17239253_SNP [dm6]	A	T	4.037e^-4	0.946	INTRON beat-IIb
3L	14639870	3L_14639870_SNP [dm3] 3L_14646770_SNP [dm6]	A	G	4.041e^-4	0.946	INTRON dlp
2L	1400583	2L_1400583_SNP [dm3] 2L_1400583_SNP [dm6]	A	C	4.050e^-4	0.946	INTRON lea	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	9416027	2L_9416027_INS [dm3] 2L_9416027_INS [dm6]	G	GG	4.058e^-4	0.946	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	4.063e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	7800524	2R_7800524_SNP [dm3] 2R_11913019_SNP [dm6]	A	C	4.066e^-4	0.946	UPSTREAM CG13183 INTERGENIC
3R	17319632	3R_17319632_SNP [dm3] 3R_21493910_SNP [dm6]	G	A	4.072e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18858554	2R_18858554_DEL [dm3] 2R_22971031_DEL [dm6]	GA	G	4.077e^-4	0.946	INTERGENIC
X	569561	X_569561_DEL [dm3] X_675528_DEL [dm6]	CC	C	4.085e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6814935	2R_6814935_SNP [dm3] 2R_10927430_SNP [dm6]	G	T	4.098e^-4	0.946	INTERGENIC
2L	6036812	2L_6036812_SNP [dm3] 2L_6036812_SNP [dm6]	T	G	4.119e^-4	0.946	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21384283	X_21384283_SNP [dm3] X_21513256_SNP [dm6]	A	G	4.134e^-4	0.946	INTRON CR45082
2L	9818895	2L_9818895_SNP [dm3] 2L_9818895_SNP [dm6]	A	G	4.142e^-4	0.946	INTRON nAChRalpha6
3L	12986198	3L_12986198_SNP [dm3] 3L_12993098_SNP [dm6]	T	A	4.148e^-4	0.946	INTERGENIC
2R	15198344	2R_15198344_SNP [dm3] 2R_19310839_SNP [dm6]	A	G	4.152e^-4	0.946	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2R	15992918	2R_15992918_SNP [dm3] 2R_20105413_SNP [dm6]	A	C	4.157e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	4104740	2L_4104740_SNP [dm3] 2L_4104740_SNP [dm6]	C	A	4.164e^-4	0.946	INTRON ed
3R	6845721	3R_6845721_SNP [dm3] 3R_11019999_SNP [dm6]	G	T	4.166e^-4	0.946	INTRON CG34114
X	3781641	X_3781641_SNP [dm3] X_3887608_SNP [dm6]	G	A	4.168e^-4	0.946	INTRON CG15239
2R	14516576	2R_14516576_SNP [dm3] 2R_18629071_SNP [dm6]	T	A	4.177e^-4	0.946	SYNONYMOUS_CODING Eip55E DOWNSTREAM CG5482
X	572464	X_572464_SNP [dm3] X_678431_SNP [dm6]	G	A	4.186e^-4	0.946	INTERGENIC
3R	3397456	3R_3397456_SNP [dm3] 3R_7571734_SNP [dm6]	T	G	4.193e^-4	0.946	UTR_3_PRIME CG34127
2L	20562129	2L_20562129_SNP [dm3] 2L_20562129_SNP [dm6]	T	C	4.193e^-4	0.946	UPSTREAM CR45347 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	14921220	2L_14921220_SNP [dm3] 2L_14921220_SNP [dm6]	C	A	4.195e^-4	0.946	INTRON CG42313
X	12891564	X_12891564_DEL [dm3] X_12997531_DEL [dm6]	CTAC	C	4.197e^-4	0.946	INTRON rad
2L	4209634	2L_4209634_SNP [dm3] 2L_4209634_SNP [dm6]	C	A	4.199e^-4	0.946	SYNONYMOUS_CODING ft
2R	19211122	2R_19211122_SNP [dm3] 2R_23323599_SNP [dm6]	A	G	4.200e^-4	0.946	UPSTREAM CG9861 & 1 other INTERGENIC
3L	10088852	3L_10088852_SNP [dm3] 3L_10095752_SNP [dm6]	G	A	4.204e^-4	0.946	DOWNSTREAM CG42825 INTRON dpr6
3L	18897932	3L_18897932_INS [dm3] 3L_18904832_INS [dm6]	A	AC	4.207e^-4	0.946	UTR_5_PRIME CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9779398	2L_9779398_SNP [dm3] 2L_9779398_SNP [dm6]	C	T	4.222e^-4	0.946	INTERGENIC
X	4197426	X_4197426_SNP [dm3] X_4303393_SNP [dm6]	A	T	4.228e^-4	0.946	INTERGENIC
2R	18995681	2R_18995681_SNP [dm3] 2R_23108158_SNP [dm6]	T	G	4.239e^-4	0.946	INTERGENIC
2R	6395180	2R_6395180_SNP [dm3] 2R_10507675_SNP [dm6]	T	G	4.240e^-4	0.946	UTR_3_PRIME lola INTRON lola
2R	11776542	2R_11776542_SNP [dm3] 2R_15889037_SNP [dm6]	C	T	4.253e^-4	0.946	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	8141633	2R_8141633_SNP [dm3] 2R_12254128_SNP [dm6]	G	C	4.255e^-4	0.946	UTR_5_PRIME CG13168
3L	21549601	3L_21549601_SNP [dm3] 3L_21556501_SNP [dm6]	A	G	4.267e^-4	0.946	SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2R	6981462	2R_6981462_SNP [dm3] 2R_11093957_SNP [dm6]	G	A	4.271e^-4	0.946	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	4.276e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16217455	2L_16217455_SNP [dm3] 2L_16217455_SNP [dm6]	C	T	4.296e^-4	0.946	UPSTREAM CR43840 INTERGENIC
2R	12674981	2R_12674981_SNP [dm3] 2R_16787476_SNP [dm6]	A	G	4.309e^-4	0.946	UTR_5_PRIME CG5522 INTRON CG5522
3L	5776812	3L_5776812_SNP [dm3] 3L_5783712_SNP [dm6]	C	T	4.310e^-4	0.946	SYNONYMOUS_CODING Cralbp UTR_3_PRIME Pmi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15912639	2R_15912639_SNP [dm3] 2R_20025134_SNP [dm6]	A	G	4.313e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11636922	2R_11636922_SNP [dm3] 2R_15749417_SNP [dm6]	A	T	4.315e^-4	0.946	INTRON CG30089
3R	16770793	3R_16770793_SNP [dm3] 3R_20945071_SNP [dm6]	T	A	4.316e^-4	0.946	INTRON CG31191	TF binding site mE1_TFBS_cad
2R	18863349	2R_18863349_SNP [dm3] 2R_22975826_SNP [dm6]	A	C	4.321e^-4	0.946	INTERGENIC
3R	8622391	3R_8622391_SNP [dm3] 3R_12796669_SNP [dm6]	A	G	4.330e^-4	0.946	INTERGENIC
2R	10581370	2R_10581370_SNP [dm3] 2R_14693865_SNP [dm6]	A	G	4.333e^-4	0.946	INTRON mspo
3L	7697407	3L_7697407_INS [dm3] 3L_7704307_INS [dm6]	T	TT	4.334e^-4	0.946	DOWNSTREAM Ank2 INTRON CG32373 & 1 other
X	17777817	X_17777817_SNP [dm3] X_17883784_SNP [dm6]	C	A	4.335e^-4	0.946	UTR_5_PRIME CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5547157	3L_5547157_INS [dm3] 3L_5554057_INS [dm6]	T	TGTCGGGCGAGTCTACTGGA...	4.346e^-4	0.946	INTERGENIC
2R	5023002	2R_5023002_SNP [dm3] 2R_9135497_SNP [dm6]	C	T	4.359e^-4	0.946	UTR_3_PRIME alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
2R	17758441	2R_17758441_SNP [dm3] 2R_21870936_SNP [dm6]	T	A	4.362e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	585507	X_585507_SNP [dm3] X_691474_SNP [dm6]	C	G	4.365e^-4	0.946	INTRON sdk	TF binding site mE1_TFBS_sens
X	4861892	X_4861892_SNP [dm3] X_4967859_SNP [dm6]	G	A	4.365e^-4	0.946	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	4.366e^-4	0.946	INTRON Octbeta2R
2L	16639399	2L_16639399_SNP [dm3] 2L_16639399_SNP [dm6]	C	A	4.367e^-4	0.946	INTRON CG42389
2R	10873822	2R_10873822_SNP [dm3] 2R_14986317_SNP [dm6]	G	T	4.368e^-4	0.946	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	4359401	3R_4359401_SNP [dm3] 3R_8533679_SNP [dm6]	T	C	4.371e^-4	0.946	INTERGENIC
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	4.373e^-4	0.946	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	17554541	3L_17554541_SNP [dm3] 3L_17561441_SNP [dm6]	T	A	4.374e^-4	0.946	UTR_3_PRIME Eip74EF
3L	4487881	3L_4487881_SNP [dm3] 3L_4487881_SNP [dm6]	A	C	4.381e^-4	0.946	INTRON CG13722
3L	13391390	3L_13391390_SNP [dm3] 3L_13398290_SNP [dm6]	C	G	4.384e^-4	0.946	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12177936	2R_12177936_SNP [dm3] 2R_16290431_SNP [dm6]	C	T	4.386e^-4	0.946	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10181331	2L_10181331_SNP [dm3] 2L_10181331_SNP [dm6]	G	T	4.387e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13996318	2R_13996318_SNP [dm3] 2R_18108813_SNP [dm6]	C	T	4.391e^-4	0.946	UPSTREAM CG5756 INTERGENIC
3L	2994905	3L_2994905_SNP [dm3] 3L_2994905_SNP [dm6]	A	G	4.399e^-4	0.946	UPSTREAM CG2113 INTERGENIC
2L	3063765	2L_3063765_SNP [dm3] 2L_3063765_SNP [dm6]	A	G	4.402e^-4	0.946	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13118693	3L_13118693_SNP [dm3] 3L_13125593_SNP [dm6]	C	T	4.412e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_sens
X	8096264	X_8096264_SNP [dm3] X_8202231_SNP [dm6]	T	C	4.422e^-4	0.946	INTRON sdt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	778091	3L_778091_SNP [dm3] 3L_778091_SNP [dm6]	T	G	4.422e^-4	0.946	INTERGENIC
X	15999712	X_15999712_DEL [dm3] X_16105679_DEL [dm6]	TT	T	4.425e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12718270	3L_12718270_INS [dm3] 3L_12725170_INS [dm6]	T	TGT	4.428e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12718274	3L_12718274_MNP [dm3] 3L_12725174_MNP [dm6]	GTA	TAC	4.428e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5472095	X_5472095_SNP [dm3] X_5578062_SNP [dm6]	A	G	4.432e^-4	0.946	INTERGENIC
3R	18635551	3R_18635551_SNP [dm3] 3R_22809829_SNP [dm6]	C	T	4.449e^-4	0.946	INTERGENIC
3L	17264240	3L_17264240_SNP [dm3] 3L_17271140_SNP [dm6]	C	T	4.459e^-4	0.946	INTERGENIC
2R	15002211	2R_15002211_SNP [dm3] 2R_19114706_SNP [dm6]	C	T	4.465e^-4	0.946	INTRON 5-HT1A
3L	11154055	3L_11154055_SNP [dm3] 3L_11160955_SNP [dm6]	T	C	4.473e^-4	0.946	INTRON CG32082
3L	1277747	3L_1277747_SNP [dm3] 3L_1277747_SNP [dm6]	A	C	4.473e^-4	0.946	INTRON CG32333
3L	18240463	3L_18240463_SNP [dm3] 3L_18247363_SNP [dm6]	G	T	4.478e^-4	0.946	INTERGENIC
3R	14658280	3R_14658280_DEL [dm3] 3R_18832558_DEL [dm6]	TATAC	T	4.481e^-4	0.946	INTRON CG18208
2R	11410995	2R_11410995_SNP [dm3] 2R_15523490_SNP [dm6]	G	A	4.490e^-4	0.946	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3810987	X_3810987_SNP [dm3] X_3916954_SNP [dm6]	C	T	4.498e^-4	0.946	INTRON CG42541
3R	11077414	3R_11077414_SNP [dm3] 3R_15251692_SNP [dm6]	C	A	4.507e^-4	0.946	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3557565	2L_3557565_SNP [dm3] 2L_3557565_SNP [dm6]	A	G	4.509e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	1243074	2L_1243074_SNP [dm3] 2L_1243074_SNP [dm6]	A	G	4.513e^-4	0.946	DOWNSTREAM CG5397 INTERGENIC
X	2776564	X_2776564_SNP [dm3] X_2882531_SNP [dm6]	G	T	4.521e^-4	0.946	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	8043310	2L_8043310_DEL [dm3] 2L_8043310_DEL [dm6]	TT	T	4.532e^-4	0.946	UPSTREAM snoRNA:Psi28S-2648 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16128689	2R_16128689_SNP [dm3] 2R_20241184_SNP [dm6]	T	C	4.546e^-4	0.946	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2R	18561412	2R_18561412_SNP [dm3] 2R_22673907_SNP [dm6]	T	C	4.560e^-4	0.946	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
3L	13337104	3L_13337104_SNP [dm3] 3L_13344004_SNP [dm6]	A	T	4.564e^-4	0.946	INTRON CR44559
3L	15509159	3L_15509159_SNP [dm3] 3L_15516059_SNP [dm6]	G	A	4.567e^-4	0.946	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	4375831	X_4375831_INS [dm3] X_4481798_INS [dm6]	G	GACACAAGGTACTCG...	4.570e^-4	0.946	INTRON CR32773 & 1 other
3L	7564629	3L_7564629_SNP [dm3] 3L_7571529_SNP [dm6]	C	T	4.576e^-4	0.946	INTERGENIC
X	595953	X_595953_SNP [dm3] X_701920_SNP [dm6]	C	T	4.598e^-4	0.946	INTRON sdk
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	4.599e^-4	0.946	INTRON Tango5
3L	17264248	3L_17264248_SNP [dm3] 3L_17271148_SNP [dm6]	T	C	4.600e^-4	0.946	INTERGENIC
2L	6307191	2L_6307191_SNP [dm3] 2L_6307191_SNP [dm6]	C	T	4.603e^-4	0.946	INTRON Ddr
3L	5549315	3L_5549315_INS [dm3] 3L_5556215_INS [dm6]	T	TAGAGTTGTT	4.607e^-4	0.946	INTERGENIC
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	4.614e^-4	0.946	INTRON SK
3R	23501931	3R_23501931_SNP [dm3] 3R_27676209_SNP [dm6]	G	A	4.619e^-4	0.946	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14781715	3L_14781715_SNP [dm3] 3L_14788615_SNP [dm6]	T	C	4.624e^-4	0.946	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	6216203	3R_6216203_SNP [dm3] 3R_10390481_SNP [dm6]	G	T	4.629e^-4	0.946	INTRON cwo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14945756	2R_14945756_SNP [dm3] 2R_19058251_SNP [dm6]	A	T	4.632e^-4	0.946	INTERGENIC
3R	2555262	3R_2555262_SNP [dm3] 3R_6729540_SNP [dm6]	A	G	4.644e^-4	0.946	INTRON pb	regulatory region FlyBase REDfly_CRMs
2R	16131913	2R_16131913_SNP [dm3] 2R_20244408_SNP [dm6]	G	A	4.647e^-4	0.946	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6816221	2R_6816221_SNP [dm3] 2R_10928716_SNP [dm6]	A	C	4.651e^-4	0.946	INTERGENIC
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	4.658e^-4	0.946	INTRON tn
3L	15294701	3L_15294701_SNP [dm3] 3L_15301601_SNP [dm6]	C	G	4.664e^-4	0.946	SYNONYMOUS_CODING Best3 DOWNSTREAM Best4	TF binding site mE1_TFBS_sens
X	6539889	X_6539889_SNP [dm3] X_6645856_SNP [dm6]	G	A	4.664e^-4	0.946	INTRON pigs
X	8149713	X_8149713_SNP [dm3] X_8255680_SNP [dm6]	T	G	4.668e^-4	0.946	INTRON CG1632
3R	24195971	3R_24195971_SNP [dm3] 3R_28370249_SNP [dm6]	A	G	4.679e^-4	0.946	INTERGENIC
X	21337342	X_21337342_SNP [dm3] X_21466315_SNP [dm6]	A	T	4.685e^-4	0.946	DOWNSTREAM CR45507 INTERGENIC
2R	12645541	2R_12645541_SNP [dm3] 2R_16758036_SNP [dm6]	C	A	4.688e^-4	0.946	SYNONYMOUS_CODING unc-104
3L	4291287	3L_4291287_SNP [dm3] 3L_4291287_SNP [dm6]	C	T	4.692e^-4	0.946	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
X	15999824	X_15999824_SNP [dm3] X_16105791_SNP [dm6]	C	T	4.693e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12569543	3L_12569543_SNP [dm3] 3L_12576443_SNP [dm6]	C	T	4.698e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	21054273	3L_21054273_SNP [dm3] 3L_21061173_SNP [dm6]	G	T	4.701e^-4	0.946	INTRON siz	TF binding site mE1_TFBS_HSA
2L	17890493	2L_17890493_SNP [dm3] 2L_17890493_SNP [dm6]	C	T	4.702e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10049630	3L_10049630_SNP [dm3] 3L_10056530_SNP [dm6]	T	C	4.707e^-4	0.946	INTRON dpr6
3L	18839432	3L_18839432_SNP [dm3] 3L_18846332_SNP [dm6]	T	G	4.709e^-4	0.946	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16727276	X_16727276_SNP [dm3] X_16833243_SNP [dm6]	C	G	4.709e^-4	0.946	INTRON CG13004
2R	8131808	2R_8131808_SNP [dm3] 2R_12244303_SNP [dm6]	A	C	4.718e^-4	0.946	INTRON CG43244
3L	21053830	3L_21053830_SNP [dm3] 3L_21060730_SNP [dm6]	T	C	4.730e^-4	0.946	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11889597	2L_11889597_SNP [dm3] 2L_11889597_SNP [dm6]	G	A	4.732e^-4	0.946	INTRON Pde1c
3L	15396737	3L_15396737_SNP [dm3] 3L_15403637_SNP [dm6]	T	A	4.734e^-4	0.946	INTERGENIC
X	1792536	X_1792536_SNP [dm3] X_1898503_SNP [dm6]	C	T	4.738e^-4	0.946	INTRON arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens
3L	2466543	3L_2466543_SNP [dm3] 3L_2466543_SNP [dm6]	A	C	4.749e^-4	0.946	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17150604	2R_17150604_SNP [dm3] 2R_21263099_SNP [dm6]	G	C	4.750e^-4	0.946	INTRON Rgk3
X	15808619	X_15808619_SNP [dm3] X_15914586_SNP [dm6]	G	A	4.751e^-4	0.946	INTRON CG8909
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	4.761e^-4	0.946	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
3R	24987246	3R_24987246_SNP [dm3] 3R_29161524_SNP [dm6]	T	C	4.762e^-4	0.946	SYNONYMOUS_CODING CG11897
2R	19211121	2R_19211121_SNP [dm3] 2R_23323598_SNP [dm6]	A	C	4.768e^-4	0.946	UPSTREAM CG9861 & 1 other INTERGENIC
2R	4431399	2R_4431399_SNP [dm3] 2R_8543894_SNP [dm6]	T	G	4.772e^-4	0.946	UPSTREAM CR44279 INTERGENIC
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	4.774e^-4	0.946	INTRON sfl
2R	17127034	2R_17127034_SNP [dm3] 2R_21239529_SNP [dm6]	A	T	4.775e^-4	0.946	INTRON ASPP
3R	19914244	3R_19914244_SNP [dm3] 3R_24088522_SNP [dm6]	A	G	4.781e^-4	0.946	INTRON 4EHP
X	1789179	X_1789179_SNP [dm3] X_1895146_SNP [dm6]	G	A	4.783e^-4	0.946	SYNONYMOUS_CODING arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15741105	3L_15741105_SNP [dm3] 3L_15748005_SNP [dm6]	C	G	4.784e^-4	0.946	EXON CR45240	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	728150	3R_728150_SNP [dm3] 3R_4902428_SNP [dm6]	G	T	4.786e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15451605	2R_15451605_SNP [dm3] 2R_19564100_SNP [dm6]	C	A	4.788e^-4	0.946	DOWNSTREAM tRNA:CR33535 INTRON sm
3R	13877031	3R_13877031_SNP [dm3] 3R_18051309_SNP [dm6]	C	T	4.799e^-4	0.946	INTRON htl	TF binding site BDTNP1_TFBS_twi
3R	16299534	3R_16299534_SNP [dm3] 3R_20473812_SNP [dm6]	G	A	4.808e^-4	0.946	INTRON Gfrl
2R	7327863	2R_7327863_SNP [dm3] 2R_11440358_SNP [dm6]	A	T	4.810e^-4	0.946	INTRON CG7777
3R	7910358	3R_7910358_DEL [dm3] 3R_12084636_DEL [dm6]	TGAATCAGTTTAATAAA...	G	4.813e^-4	0.946	INTRON CG14741
X	12104299	X_12104299_SNP [dm3] X_12210266_SNP [dm6]	G	A	4.828e^-4	0.946	INTRON Ten-a
X	555686	X_555686_SNP [dm3] X_661653_SNP [dm6]	C	T	4.830e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	4.837e^-4	0.946	INTERGENIC
2L	11889672	2L_11889672_SNP [dm3] 2L_11889672_SNP [dm6]	T	C	4.838e^-4	0.946	INTRON Pde1c
2L	19879742	2L_19879742_INS [dm3] 2L_19879742_INS [dm6]	A	AT	4.839e^-4	0.946	INTRON sick
2R	18858793	2R_18858793_SNP [dm3] 2R_22971270_SNP [dm6]	G	A	4.844e^-4	0.946	INTERGENIC
2L	4859493	2L_4859493_SNP [dm3] 2L_4859493_SNP [dm6]	G	A	4.846e^-4	0.946	INTRON pog
3R	12106474	3R_12106474_SNP [dm3] 3R_16280752_SNP [dm6]	C	A	4.850e^-4	0.946	UPSTREAM gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20130472	2L_20130472_SNP [dm3] 2L_20130472_SNP [dm6]	T	C	4.868e^-4	0.946	INTERGENIC
3R	14510315	3R_14510315_SNP [dm3] 3R_18684593_SNP [dm6]	C	A	4.870e^-4	0.946	SYNONYMOUS_CODING CG7708
3L	6454534	3L_6454534_SNP [dm3] 3L_6461434_SNP [dm6]	C	T	4.871e^-4	0.946	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4487248	3L_4487248_SNP [dm3] 3L_4487248_SNP [dm6]	A	G	4.875e^-4	0.946	SYNONYMOUS_CODING CG13722
2L	1400587	2L_1400587_SNP [dm3] 2L_1400587_SNP [dm6]	G	A	4.875e^-4	0.946	INTRON lea	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	501299	X_501299_SNP [dm3] X_607266_SNP [dm6]	C	T	4.875e^-4	0.946	INTRON CG13366	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	20187577	2R_20187577_INS [dm3] 2R_24300054_INS [dm6]	C	CCACTC	4.879e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16130968	2R_16130968_SNP [dm3] 2R_20243463_SNP [dm6]	C	T	4.880e^-4	0.946	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	3082190	2L_3082190_SNP [dm3] 2L_3082190_SNP [dm6]	A	G	4.882e^-4	0.946	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12675153	3L_12675153_SNP [dm3] 3L_12682053_SNP [dm6]	T	C	4.890e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9417946	2L_9417946_SNP [dm3] 2L_9417946_SNP [dm6]	G	C	4.897e^-4	0.946	INTRON Mco1
2L	2246227	2L_2246227_SNP [dm3] 2L_2246227_SNP [dm6]	A	G	4.913e^-4	0.946	DOWNSTREAM CG4267 & 1 other EXON CR42859
3L	13400561	3L_13400561_SNP [dm3] 3L_13407461_SNP [dm6]	A	T	4.915e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20940858	2L_20940858_SNP [dm3] 2L_20940858_SNP [dm6]	G	C	4.915e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6379073	3R_6379073_SNP [dm3] 3R_10553351_SNP [dm6]	G	C	4.919e^-4	0.946	INTRON hth	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11795554	3L_11795554_SNP [dm3] 3L_11802454_SNP [dm6]	G	A	4.922e^-4	0.946	SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
3L	7532091	3L_7532091_SNP [dm3] 3L_7538991_SNP [dm6]	A	G	4.923e^-4	0.946	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3L	12056631	3L_12056631_SNP [dm3] 3L_12063531_SNP [dm6]	T	C	4.924e^-4	0.946	INTRON rols	TF binding site mE1_TFBS_HSA
2R	18193030	2R_18193030_SNP [dm3] 2R_22305525_SNP [dm6]	C	T	4.928e^-4	0.946	INTRON wdp
2R	19210551	2R_19210551_SNP [dm3] 2R_23323028_SNP [dm6]	A	G	4.933e^-4	0.946	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
X	13848358	X_13848358_SNP [dm3] X_13954325_SNP [dm6]	G	A	4.940e^-4	0.946	UPSTREAM CG11068 INTRON mamo	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
X	4544061	X_4544061_SNP [dm3] X_4650028_SNP [dm6]	A	C	4.941e^-4	0.946	UTR_5_PRIME Torsin & 1 other UPSTREAM Cbp80 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	18907690	3R_18907690_SNP [dm3] 3R_23081968_SNP [dm6]	C	T	4.944e^-4	0.946	INTRON CG13830	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	7532087	3L_7532087_SNP [dm3] 3L_7538987_SNP [dm6]	A	T	4.955e^-4	0.946	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3L	4481726	3L_4481726_SNP [dm3] 3L_4481726_SNP [dm6]	T	A	4.965e^-4	0.946	DOWNSTREAM CG7465 INTERGENIC
3R	8607740	3R_8607740_SNP [dm3] 3R_12782018_SNP [dm6]	C	A	4.974e^-4	0.946	INTRON beat-Vc
2L	19883397	2L_19883397_SNP [dm3] 2L_19883397_SNP [dm6]	C	T	4.980e^-4	0.946	INTRON sick
3L	12453624	3L_12453624_SNP [dm3] 3L_12460524_SNP [dm6]	G	T	4.985e^-4	0.946	INTERGENIC
3R	14159885	3R_14159885_SNP [dm3] 3R_18334163_SNP [dm6]	A	G	4.999e^-4	0.946	UTR_3_PRIME CG15803
3R	8456606	3R_8456606_SNP [dm3] 3R_12630884_SNP [dm6]	G	T	5.001e^-4	0.946	NON_SYNONYMOUS_CODING Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8244587	2L_8244587_SNP [dm3] 2L_8244587_SNP [dm6]	C	T	5.004e^-4	0.946	SYNONYMOUS_STOP CG8086 UPSTREAM CG43057 INTRON CG8086
2R	10237720	2R_10237720_SNP [dm3] 2R_14350215_SNP [dm6]	G	A	5.024e^-4	0.946	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15316445	2R_15316445_SNP [dm3] 2R_19428940_SNP [dm6]	G	T	5.028e^-4	0.946	UTR_3_PRIME CalpA INTRON CalpA
2L	20130301	2L_20130301_SNP [dm3] 2L_20130301_SNP [dm6]	A	G	5.028e^-4	0.946	INTERGENIC
X	4375891	X_4375891_SNP [dm3] X_4481858_SNP [dm6]	G	T	5.030e^-4	0.946	INTRON CR32773 & 1 other
3L	13518074	3L_13518074_SNP [dm3] 3L_13524974_SNP [dm6]	T	C	5.035e^-4	0.946	UTR_3_PRIME bru-3
3R	18702021	3R_18702021_SNP [dm3] 3R_22876299_SNP [dm6]	A	G	5.035e^-4	0.946	INTERGENIC
3R	26089307	3R_26089307_SNP [dm3] 3R_30263585_SNP [dm6]	T	C	5.042e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18897526	3L_18897526_SNP [dm3] 3L_18904426_SNP [dm6]	C	T	5.050e^-4	0.946	SYNONYMOUS_CODING CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	17146775	2R_17146775_SNP [dm3] 2R_21259270_SNP [dm6]	C	G	5.050e^-4	0.946	INTRON Rgk3
3L	18269216	3L_18269216_SNP [dm3] 3L_18276116_SNP [dm6]	T	C	5.054e^-4	0.946	INTERGENIC
X	4375773	X_4375773_SNP [dm3] X_4481740_SNP [dm6]	G	A	5.083e^-4	0.946	INTRON CR32773 & 1 other
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	5.083e^-4	0.946	INTRON fz
3R	3397502	3R_3397502_SNP [dm3] 3R_7571780_SNP [dm6]	A	T	5.087e^-4	0.946	UTR_3_PRIME CG34127
3R	19403022	3R_19403022_SNP [dm3] 3R_23577300_SNP [dm6]	T	G	5.093e^-4	0.946	INTRON beat-IV
X	16909935	X_16909935_SNP [dm3] X_17015902_SNP [dm6]	G	A	5.094e^-4	0.946	INTRON CG45002
2R	10093888	2R_10093888_SNP [dm3] 2R_14206383_SNP [dm6]	C	G	5.098e^-4	0.946	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	3440718	2R_3440718_SNP [dm3] 2R_7553213_SNP [dm6]	G	A	5.099e^-4	0.946	INTRON Corin
3L	10544662	3L_10544662_DEL [dm3] 3L_10551562_DEL [dm6]	AG	A	5.100e^-4	0.946	INTRON A2bp1
2R	17417648	2R_17417648_INS [dm3] 2R_21530143_INS [dm6]	T	TT	5.102e^-4	0.946	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	12052968	3L_12052968_SNP [dm3] 3L_12059868_SNP [dm6]	T	G	5.104e^-4	0.946	INTRON rols	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	4487149	X_4487149_SNP [dm3] X_4593116_SNP [dm6]	G	A	5.105e^-4	0.946	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	4591960	2R_4591960_SNP [dm3] 2R_8704455_SNP [dm6]	G	A	5.110e^-4	0.946	UTR_3_PRIME CG12376
2L	20138039	2L_20138039_SNP [dm3] 2L_20138039_SNP [dm6]	A	G	5.112e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8149714	X_8149714_SNP [dm3] X_8255681_SNP [dm6]	T	A	5.121e^-4	0.946	INTRON CG1632
2L	1665378	2L_1665378_SNP [dm3] 2L_1665378_SNP [dm6]	T	A	5.130e^-4	0.946	INTRON chinmo
3L	14757402	3L_14757402_SNP [dm3] 3L_14764302_SNP [dm6]	C	T	5.131e^-4	0.946	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
2L	5804255	2L_5804255_SNP [dm3] 2L_5804255_SNP [dm6]	T	G	5.133e^-4	0.946	DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11384876	2R_11384876_SNP [dm3] 2R_15497371_SNP [dm6]	A	G	5.135e^-4	0.946	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16109256	2R_16109256_SNP [dm3] 2R_20221751_SNP [dm6]	G	T	5.137e^-4	0.946	INTRON CR45423
2R	18194777	2R_18194777_SNP [dm3] 2R_22307272_SNP [dm6]	C	G	5.139e^-4	0.946	INTRON wdp
3L	10079840	3L_10079840_SNP [dm3] 3L_10086740_SNP [dm6]	A	T	5.142e^-4	0.946	DOWNSTREAM CG14160 INTRON dpr6
X	15999613	X_15999613_SNP [dm3] X_16105580_SNP [dm6]	A	C	5.145e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	19885070	2L_19885070_SNP [dm3] 2L_19885070_SNP [dm6]	A	T	5.158e^-4	0.946	INTRON sick
2L	20145317	2L_20145317_SNP [dm3] 2L_20145317_SNP [dm6]	C	T	5.159e^-4	0.946	INTERGENIC
3R	26486720	3R_26486720_SNP [dm3] 3R_30660998_SNP [dm6]	C	A	5.164e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	1643643	2L_1643643_SNP [dm3] 2L_1643643_SNP [dm6]	T	G	5.166e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19195433	3R_19195433_SNP [dm3] 3R_23369711_SNP [dm6]	G	A	5.169e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18488399	3R_18488399_SNP [dm3] 3R_22662677_SNP [dm6]	G	T	5.171e^-4	0.946	INTRON CG45058
3L	8413214	3L_8413214_SNP [dm3] 3L_8420114_SNP [dm6]	A	G	5.184e^-4	0.946	INTRON CG32354
3R	17969989	3R_17969989_SNP [dm3] 3R_22144267_SNP [dm6]	C	A	5.189e^-4	0.946	INTRON SKIP
X	559756	X_559756_SNP [dm3] X_665723_SNP [dm6]	T	A	5.189e^-4	0.946	INTERGENIC	transposable element FlyBase
2R	17394949	2R_17394949_DEL [dm3] 2R_21507444_DEL [dm6]	CGAGCGAAGTC...	C	5.191e^-4	0.946	UTR_5_PRIME MESK2 INTRON MESK2
3L	4144237	3L_4144237_SNP [dm3] 3L_4144237_SNP [dm6]	G	A	5.191e^-4	0.946	INTRON CG32260
2L	17781046	2L_17781046_SNP [dm3] 2L_17781046_SNP [dm6]	C	G	5.213e^-4	0.946	INTERGENIC
3L	2466517	3L_2466517_SNP [dm3] 3L_2466517_SNP [dm6]	A	T	5.215e^-4	0.946	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	9460885	2L_9460885_DEL [dm3] 2L_9460885_DEL [dm6]	CCTTCATCTA	C	5.224e^-4	0.946	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13902465	2R_13902465_SNP [dm3] 2R_18014960_SNP [dm6]	C	G	5.226e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18270580	3L_18270580_SNP [dm3] 3L_18277480_SNP [dm6]	T	C	5.228e^-4	0.946	INTERGENIC
3L	18270581	3L_18270581_SNP [dm3] 3L_18277481_SNP [dm6]	C	T	5.228e^-4	0.946	INTERGENIC
3R	26429885	3R_26429885_SNP [dm3] 3R_30604163_SNP [dm6]	G	C	5.234e^-4	0.946	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
X	15796036	X_15796036_SNP [dm3] X_15902003_SNP [dm6]	G	A	5.237e^-4	0.946	SYNONYMOUS_CODING shi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15430175	2L_15430175_SNP [dm3] 2L_15430175_SNP [dm6]	T	C	5.247e^-4	0.946	INTERGENIC
X	12181539	X_12181539_SNP [dm3] X_12287506_SNP [dm6]	T	G	5.252e^-4	0.946	INTRON Ten-a
3L	18270567	3L_18270567_SNP [dm3] 3L_18277467_SNP [dm6]	C	T	5.252e^-4	0.946	INTERGENIC
3L	10283487	3L_10283487_SNP [dm3] 3L_10290387_SNP [dm6]	C	T	5.254e^-4	0.946	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
3L	15211077	3L_15211077_SNP [dm3] 3L_15217977_SNP [dm6]	A	G	5.279e^-4	0.946	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7745570	3L_7745570_SNP [dm3] 3L_7752470_SNP [dm6]	T	G	5.282e^-4	0.946	INTRON CG32373	TF binding site BDTNP1_TFBS_sna
2L	4074741	2L_4074741_INS [dm3] 2L_4074741_INS [dm6]	C	CT	5.288e^-4	0.946	INTRON ed & 1 other
3L	10922052	3L_10922052_SNP [dm3] 3L_10928952_SNP [dm6]	T	C	5.289e^-4	0.946	INTERGENIC
2R	3510883	2R_3510883_DEL [dm3] 2R_7623378_DEL [dm6]	TCT	T	5.303e^-4	0.946	UPSTREAM CR44444 INTRON CG43340	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3082191	2L_3082191_SNP [dm3] 2L_3082191_SNP [dm6]	A	T	5.307e^-4	0.946	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	5.309e^-4	0.946	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	7721679	2L_7721679_SNP [dm3] 2L_7721679_SNP [dm6]	T	C	5.310e^-4	0.946	INTRON CG13794
X	517208	X_517208_SNP [dm3] X_623175_SNP [dm6]	A	C	5.312e^-4	0.946	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
2L	3857356	2L_3857356_SNP [dm3] 2L_3857356_SNP [dm6]	T	G	5.314e^-4	0.946	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
X	4734567	X_4734567_SNP [dm3] X_4840534_SNP [dm6]	G	A	5.314e^-4	0.946	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14510303	3R_14510303_SNP [dm3] 3R_18684581_SNP [dm6]	G	T	5.329e^-4	0.946	SYNONYMOUS_CODING CG7708
3L	15210886	3L_15210886_SNP [dm3] 3L_15217786_SNP [dm6]	A	G	5.338e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1790236	X_1790236_SNP [dm3] X_1896203_SNP [dm6]	A	G	5.343e^-4	0.946	SYNONYMOUS_CODING arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1794280	X_1794280_SNP [dm3] X_1900247_SNP [dm6]	T	C	5.343e^-4	0.946	UPSTREAM arm DOWNSTREAM CG32803 INTRON arm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19875610	2L_19875610_SNP [dm3] 2L_19875610_SNP [dm6]	G	T	5.351e^-4	0.946	INTRON sick	TF binding site mE1_TFBS_cad
3L	10079816	3L_10079816_SNP [dm3] 3L_10086716_SNP [dm6]	A	C	5.356e^-4	0.946	DOWNSTREAM CG14160 INTRON dpr6
3L	15509138	3L_15509138_SNP [dm3] 3L_15516038_SNP [dm6]	T	A	5.371e^-4	0.946	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	21076200	2R_21076200_INS [dm3] 2R_25188677_INS [dm6]	A	AATA	5.377e^-4	0.946	INTRON CG9380
3R	10915789	3R_10915789_SNP [dm3] 3R_15090067_SNP [dm6]	A	C	5.383e^-4	0.946	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14596405	X_14596405_SNP [dm3] X_14702372_SNP [dm6]	G	C	5.384e^-4	0.946	SYNONYMOUS_CODING CG43088 INTRON NetB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21875708	X_21875708_SNP [dm3] X_22473872_SNP [dm6]	C	T	5.390e^-4	0.946	SYNONYMOUS_CODING CG14618 DOWNSTREAM CG12576	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	4591890	2R_4591890_SNP [dm3] 2R_8704385_SNP [dm6]	C	T	5.391e^-4	0.946	SYNONYMOUS_CODING CG12376
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	5.399e^-4	0.946	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
2R	16143359	2R_16143359_SNP [dm3] 2R_20255854_SNP [dm6]	T	C	5.406e^-4	0.946	INTRON Ate1	TF binding site mE1_TFBS_cad
3L	18898550	3L_18898550_SNP [dm3] 3L_18905450_SNP [dm6]	T	A	5.406e^-4	0.946	UTR_5_PRIME CG6841 UPSTREAM CSN1b	TF binding site BDTNP1_TFBS_dl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.454e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03968

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	6.5751	0.0373

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1787 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	5.356e^-7	0.976	INTRON CngA	TF binding site mE1_TFBS_inv
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	1.235e^-6	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	1.591e^-6	0.976	INTRON GABA-B-R1
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	2.585e^-6	0.976	UTR_5_PRIME CG6841 UPSTREAM CSN1b
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	3.426e^-6	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	4.173e^-6	0.976	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8383762	3L_8383762_SNP [dm3] 3L_8390662_SNP [dm6]	A	G	4.727e^-6	0.976	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	5.108e^-6	0.976	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	5.300e^-6	0.976	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	5.427e^-6	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	5.807e^-6	0.976	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	9.422e^-6	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	9.659e^-6	0.976	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	18880123	3R_18880123_SNP [dm3] 3R_23054401_SNP [dm6]	G	A	9.671e^-6	0.976	UPSTREAM p53 DOWNSTREAM CG17119 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	9.685e^-6	0.976	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	1.429e^-5	0.976	INTRON CG43174
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	1.440e^-5	0.976	DOWNSTREAM CG34338 INTERGENIC
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	1.482e^-5	0.976	INTERGENIC
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	1.502e^-5	0.976	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	1.530e^-5	0.976	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
X	21384446	X_21384446_SNP [dm3] X_21513419_SNP [dm6]	T	C	1.620e^-5	0.976	INTRON CR45082
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	1.669e^-5	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18897526	3L_18897526_SNP [dm3] 3L_18904426_SNP [dm6]	C	T	1.715e^-5	0.976	SYNONYMOUS_CODING CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	18897858	3L_18897858_SNP [dm3] 3L_18904758_SNP [dm6]	T	C	1.900e^-5	0.976	UPSTREAM CG6841 INTRON CSN1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	1.932e^-5	0.976	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13400561	3L_13400561_SNP [dm3] 3L_13407461_SNP [dm6]	A	T	2.039e^-5	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	2.068e^-5	0.976	INTRON rk
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	2.106e^-5	0.976	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12125004	3L_12125004_SNP [dm3] 3L_12131904_SNP [dm6]	T	A	2.171e^-5	0.976	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
X	21384283	X_21384283_SNP [dm3] X_21513256_SNP [dm6]	A	G	2.209e^-5	0.976	INTRON CR45082
3R	19536461	3R_19536461_SNP [dm3] 3R_23710739_SNP [dm6]	T	C	2.281e^-5	0.976	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
3R	16004116	3R_16004116_INS [dm3] 3R_20178394_INS [dm6]	C	CTGGATCCTC	2.491e^-5	0.976	INTERGENIC
3L	18897932	3L_18897932_INS [dm3] 3L_18904832_INS [dm6]	A	AC	2.799e^-5	0.976	UTR_5_PRIME CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	2.915e^-5	0.976	INTERGENIC
3L	1254840	3L_1254840_SNP [dm3] 3L_1254840_SNP [dm6]	C	A	3.091e^-5	0.976	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12986198	3L_12986198_SNP [dm3] 3L_12993098_SNP [dm6]	T	A	3.097e^-5	0.976	INTERGENIC
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	3.141e^-5	0.976	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	3.186e^-5	0.976	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13400560	3L_13400560_SNP [dm3] 3L_13407460_SNP [dm6]	G	C	3.390e^-5	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	3.550e^-5	0.976	INTERGENIC
2L	8330528	2L_8330528_SNP [dm3] 2L_8330528_SNP [dm6]	A	G	3.552e^-5	0.976	INTRON CG14275
3L	18898719	3L_18898719_INS [dm3] 3L_18905619_INS [dm6]	A	ATCTACC	3.581e^-5	0.976	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	18898724	3L_18898724_SNP [dm3] 3L_18905624_SNP [dm6]	A	G	3.581e^-5	0.976	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	3.587e^-5	0.976	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	3.660e^-5	0.976	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18858554	2R_18858554_DEL [dm3] 2R_22971031_DEL [dm6]	GA	G	3.778e^-5	0.976	INTERGENIC
3L	12986181	3L_12986181_SNP [dm3] 3L_12993081_SNP [dm6]	G	C	3.864e^-5	0.976	INTERGENIC
X	9465442	X_9465442_SNP [dm3] X_9571409_SNP [dm6]	C	A	3.924e^-5	0.976	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	3.948e^-5	0.976	INTERGENIC
3L	12986173	3L_12986173_SNP [dm3] 3L_12993073_SNP [dm6]	G	T	3.954e^-5	0.976	INTERGENIC
3R	17883389	3R_17883389_SNP [dm3] 3R_22057667_SNP [dm6]	A	G	4.026e^-5	0.976	INTRON how	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	4.050e^-5	0.976	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	18880135	3R_18880135_SNP [dm3] 3R_23054413_SNP [dm6]	C	T	4.166e^-5	0.976	UTR_3_PRIME CG17119 UPSTREAM p53	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	12986166	3L_12986166_SNP [dm3] 3L_12993066_SNP [dm6]	T	A	4.226e^-5	0.976	INTERGENIC
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	4.266e^-5	0.976	INTERGENIC
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	4.629e^-5	0.976	INTRON CG42788
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	4.816e^-5	0.976	INTRON CG3961
3L	12569553	3L_12569553_SNP [dm3] 3L_12576453_SNP [dm6]	G	A	4.919e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	1641557	2L_1641557_SNP [dm3] 2L_1641557_SNP [dm6]	A	G	4.940e^-5	0.976	INTERGENIC
3R	14040915	3R_14040915_SNP [dm3] 3R_18215193_SNP [dm6]	A	G	5.002e^-5	0.976	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	transposable element FlyBase
X	17324201	X_17324201_SNP [dm3] X_17430168_SNP [dm6]	T	C	5.061e^-5	0.976	INTRON CG12994
3R	14159734	3R_14159734_SNP [dm3] 3R_18334012_SNP [dm6]	T	C	5.205e^-5	0.976	UTR_3_PRIME CG15803
2L	13913327	2L_13913327_DEL [dm3] 2L_13913327_DEL [dm6]	ATTGA	A	5.236e^-5	0.976	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
3R	18483257	3R_18483257_SNP [dm3] 3R_22657535_SNP [dm6]	G	A	5.400e^-5	0.976	INTRON CG45058
3L	1913713	3L_1913713_SNP [dm3] 3L_1913713_SNP [dm6]	C	T	5.538e^-5	0.976	INTERGENIC
3L	1913660	3L_1913660_SNP [dm3] 3L_1913660_SNP [dm6]	T	A	5.596e^-5	0.976	INTERGENIC
X	16775012	X_16775012_SNP [dm3] X_16880979_SNP [dm6]	A	G	5.623e^-5	0.976	UPSTREAM CG4872 INTERGENIC
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	5.653e^-5	0.976	INTRON CG11537
X	8192518	X_8192518_SNP [dm3] X_8298485_SNP [dm6]	G	A	5.732e^-5	0.976	INTRON nAChRalpha3
3R	23178817	3R_23178817_SNP [dm3] 3R_27353095_SNP [dm6]	G	A	5.751e^-5	0.976	INTRON CG42534
X	5879487	X_5879487_SNP [dm3] X_5985454_SNP [dm6]	A	C	5.884e^-5	0.976	INTRON Grip
X	11280678	X_11280678_SNP [dm3] X_11386645_SNP [dm6]	T	A	5.962e^-5	0.976	INTRON dlg1
3L	16531305	3L_16531305_SNP [dm3] 3L_16538205_SNP [dm6]	C	T	5.985e^-5	0.976	INTRON CG43373
3L	1913735	3L_1913735_SNP [dm3] 3L_1913735_SNP [dm6]	A	G	6.040e^-5	0.976	INTERGENIC
3L	12986142	3L_12986142_SNP [dm3] 3L_12993042_SNP [dm6]	T	C	6.090e^-5	0.976	INTERGENIC
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	6.162e^-5	0.976	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1707019	2L_1707019_SNP [dm3] 2L_1707019_SNP [dm6]	A	T	6.163e^-5	0.976	DOWNSTREAM CG17660 & 1 other INTERGENIC
3L	17934578	3L_17934578_SNP [dm3] 3L_17941478_SNP [dm6]	C	T	6.254e^-5	0.976	INTRON CG43174	TF binding site mE1_TFBS_HSA
3R	26189151	3R_26189151_SNP [dm3] 3R_30363429_SNP [dm6]	A	G	6.281e^-5	0.976	UTR_3_PRIME hdc
3L	17454584	3L_17454584_SNP [dm3] 3L_17461484_SNP [dm6]	G	A	6.350e^-5	0.976	DOWNSTREAM CR44565 INTERGENIC
3R	9706320	3R_9706320_DEL [dm3] 3R_13880598_DEL [dm6]	ACAAATGGCCAGCAAAATGC...	A	6.510e^-5	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	12986144	3L_12986144_SNP [dm3] 3L_12993044_SNP [dm6]	A	G	6.604e^-5	0.976	INTERGENIC
3L	10846870	3L_10846870_SNP [dm3] 3L_10853770_SNP [dm6]	C	G	6.701e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	1707024	2L_1707024_SNP [dm3] 2L_1707024_SNP [dm6]	A	T	6.715e^-5	0.976	DOWNSTREAM CG17660 & 1 other INTERGENIC
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	6.716e^-5	0.976	INTRON tn
3R	13811326	3R_13811326_SNP [dm3] 3R_17985604_SNP [dm6]	A	T	6.724e^-5	0.976	INTRON cpo
2R	3432923	2R_3432923_SNP [dm3] 2R_7545418_SNP [dm6]	T	C	6.764e^-5	0.976	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8068491	X_8068491_SNP [dm3] X_8174458_SNP [dm6]	C	T	6.959e^-5	0.976	INTRON slpr
2L	13961300	2L_13961300_SNP [dm3] 2L_13961300_SNP [dm6]	T	C	7.003e^-5	0.976	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11443571	3R_11443571_SNP [dm3] 3R_15617849_SNP [dm6]	A	G	7.011e^-5	0.976	INTERGENIC
2R	3429018	2R_3429018_SNP [dm3] 2R_7541513_SNP [dm6]	C	A	7.053e^-5	0.976	INTRON Corin
2R	3429218	2R_3429218_SNP [dm3] 2R_7541713_SNP [dm6]	C	T	7.053e^-5	0.976	INTRON Corin
2R	3429763	2R_3429763_SNP [dm3] 2R_7542258_SNP [dm6]	G	A	7.053e^-5	0.976	INTRON Corin
2R	3431865	2R_3431865_SNP [dm3] 2R_7544360_SNP [dm6]	T	A	7.053e^-5	0.976	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3433484	2R_3433484_SNP [dm3] 2R_7545979_SNP [dm6]	T	C	7.053e^-5	0.976	START_GAINED Corin UTR_5_PRIME Corin INTRON Corin
3L	12986207	3L_12986207_SNP [dm3] 3L_12993107_SNP [dm6]	T	C	7.056e^-5	0.976	INTERGENIC
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	7.208e^-5	0.976	INTRON bnl
2R	3431923	2R_3431923_SNP [dm3] 2R_7544418_SNP [dm6]	A	C	7.350e^-5	0.976	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3432108	2R_3432108_SNP [dm3] 2R_7544603_SNP [dm6]	C	A	7.380e^-5	0.976	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15237280	2R_15237280_SNP [dm3] 2R_19349775_SNP [dm6]	G	A	7.433e^-5	0.976	START_GAINED Rgk1 UTR_5_PRIME Rgk1
2R	15993071	2R_15993071_SNP [dm3] 2R_20105566_SNP [dm6]	C	T	7.436e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	8037745	2L_8037745_SNP [dm3] 2L_8037745_SNP [dm6]	T	C	7.509e^-5	0.976	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1560977	3L_1560977_SNP [dm3] 3L_1560977_SNP [dm6]	G	A	7.509e^-5	0.976	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3L	18898322	3L_18898322_SNP [dm3] 3L_18905222_SNP [dm6]	A	G	7.585e^-5	0.976	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12888102	3L_12888102_INS [dm3] 3L_12895002_INS [dm6]	G	GTCG	7.599e^-5	0.976	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	555398	X_555398_SNP [dm3] X_661365_SNP [dm6]	C	G	7.660e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9591541	3L_9591541_SNP [dm3] 3L_9598441_SNP [dm6]	A	T	7.670e^-5	0.976	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
X	517074	X_517074_DEL [dm3] X_623041_DEL [dm6]	AA	A	7.681e^-5	0.976	UTR_3_PRIME mod_r_ UPSTREAM CG13369
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	7.709e^-5	0.976	INTRON CG43340
2L	3455419	2L_3455419_SNP [dm3] 2L_3455419_SNP [dm6]	A	G	7.792e^-5	0.976	SYNONYMOUS_CODING Cog3
3L	9693596	3L_9693596_SNP [dm3] 3L_9700496_SNP [dm6]	T	A	7.957e^-5	0.976	DOWNSTREAM CG6761 & 1 other INTERGENIC
3R	8573242	3R_8573242_SNP [dm3] 3R_12747520_SNP [dm6]	T	G	7.979e^-5	0.976	SYNONYMOUS_CODING beat-Vc
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	8.005e^-5	0.976	NON_SYNONYMOUS_CODING sti
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	8.026e^-5	0.976	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	18898741	3L_18898741_SNP [dm3] 3L_18905641_SNP [dm6]	G	A	8.073e^-5	0.976	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2R	3425376	2R_3425376_SNP [dm3] 2R_7537871_SNP [dm6]	T	C	8.086e^-5	0.976	SYNONYMOUS_CODING CG2137 DOWNSTREAM CG1598	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12800965	3L_12800965_SNP [dm3] 3L_12807865_SNP [dm6]	C	T	8.099e^-5	0.976	UPSTREAM CG32110 INTRON Sap130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	10074588	2L_10074588_SNP [dm3] 2L_10074588_SNP [dm6]	T	A	8.100e^-5	0.976	INTRON CG44153
3L	12986174	3L_12986174_SNP [dm3] 3L_12993074_SNP [dm6]	A	T	8.227e^-5	0.976	INTERGENIC
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	8.349e^-5	0.976	INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	12569543	3L_12569543_SNP [dm3] 3L_12576443_SNP [dm6]	C	T	8.374e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	18897544	3L_18897544_SNP [dm3] 3L_18904444_SNP [dm6]	T	C	8.399e^-5	0.976	SYNONYMOUS_CODING CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	16726678	3L_16726678_SNP [dm3] 3L_16733578_SNP [dm6]	T	C	8.401e^-5	0.976	UTR_5_PRIME CG9701
2L	1644348	2L_1644348_INS [dm3] 2L_1644348_INS [dm6]	T	TT	8.410e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	752667	2L_752667_SNP [dm3] 2L_752667_SNP [dm6]	C	A	8.439e^-5	0.976	UPSTREAM GABA-B-R3 INTRON GABA-B-R3
2R	15868057	2R_15868057_SNP [dm3] 2R_19980552_SNP [dm6]	G	A	8.595e^-5	0.976	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
2R	16130617	2R_16130617_SNP [dm3] 2R_20243112_SNP [dm6]	G	T	8.618e^-5	0.976	DOWNSTREAM Efhc1.2 INTRON CG11208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17262190	2R_17262190_SNP [dm3] 2R_21374685_SNP [dm6]	C	T	8.778e^-5	0.976	INTRON cv-2
3R	18878687	3R_18878687_SNP [dm3] 3R_23052965_SNP [dm6]	T	A	8.825e^-5	0.976	DOWNSTREAM Gr94a INTRON p53	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	18472406	3R_18472406_SNP [dm3] 3R_22646684_SNP [dm6]	C	A	8.966e^-5	0.976	INTRON CG45058
X	12502577	X_12502577_SNP [dm3] X_12608544_SNP [dm6]	A	G	8.972e^-5	0.976	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
3R	14884370	3R_14884370_SNP [dm3] 3R_19058648_SNP [dm6]	G	T	9.163e^-5	0.976	INTRON cdi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1267420	3L_1267420_SNP [dm3] 3L_1267420_SNP [dm6]	T	C	9.190e^-5	0.976	INTRON CG9134
3L	16555013	3L_16555013_SNP [dm3] 3L_16561913_SNP [dm6]	G	A	9.238e^-5	0.976	INTERGENIC
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	9.293e^-5	0.976	INTRON bnl
2R	15433827	2R_15433827_SNP [dm3] 2R_19546322_SNP [dm6]	C	T	9.340e^-5	0.976	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	19210551	2R_19210551_SNP [dm3] 2R_23323028_SNP [dm6]	A	G	9.405e^-5	0.976	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
3R	15652088	3R_15652088_SNP [dm3] 3R_19826366_SNP [dm6]	T	C	9.426e^-5	0.976	INTRON bnl
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	9.454e^-5	0.976	INTRON TyrR
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	9.466e^-5	0.976	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
2R	20718933	2R_20718933_SNP [dm3] 2R_24831410_SNP [dm6]	G	A	9.531e^-5	0.976	INTRON Dll	TF binding site mE1_TFBS_chinmo
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	9.561e^-5	0.976	INTRON Octbeta2R
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	9.603e^-5	0.976	INTRON gish
3R	18472407	3R_18472407_SNP [dm3] 3R_22646685_SNP [dm6]	T	C	9.616e^-5	0.976	INTRON CG45058
X	10734320	X_10734320_SNP [dm3] X_10840287_SNP [dm6]	G	A	9.673e^-5	0.976	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
3R	9707112	3R_9707112_SNP [dm3] 3R_13881390_SNP [dm6]	A	T	9.981e^-5	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	2079637	2L_2079637_SNP [dm3] 2L_2079637_SNP [dm6]	T	C	1.000e^-4	0.976	UPSTREAM CG12674 INTRON dpr3
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	1.000e^-4	0.976	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3L	18897286	3L_18897286_SNP [dm3] 3L_18904186_SNP [dm6]	T	C	1.002e^-4	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17739331	2R_17739331_SNP [dm3] 2R_21851826_SNP [dm6]	T	C	1.025e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14973176	2L_14973176_SNP [dm3] 2L_14973176_SNP [dm6]	G	T	1.033e^-4	0.976	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3510883	2R_3510883_DEL [dm3] 2R_7623378_DEL [dm6]	TCT	T	1.034e^-4	0.976	UPSTREAM CR44444 INTRON CG43340	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10286224	X_10286224_SNP [dm3] X_10392191_SNP [dm6]	A	T	1.035e^-4	0.976	INTRON flw
X	10596259	X_10596259_SNP [dm3] X_10702226_SNP [dm6]	T	G	1.050e^-4	0.976	INTRON X11Lbeta
X	517287	X_517287_SNP [dm3] X_623254_SNP [dm6]	G	A	1.061e^-4	0.976	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC	TF binding site mE1_TFBS_h
3L	874913	3L_874913_SNP [dm3] 3L_874913_SNP [dm6]	G	A	1.063e^-4	0.976	INTRON CG32479	TF binding site mE1_TFBS_cad
2R	16724027	2R_16724027_SNP [dm3] 2R_20836522_SNP [dm6]	C	T	1.067e^-4	0.976	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	21382235	X_21382235_SNP [dm3] X_21511208_SNP [dm6]	T	C	1.067e^-4	0.976	INTRON CR45082
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	1.068e^-4	0.976	INTRON dpr6
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	1.070e^-4	0.976	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	1.091e^-4	0.976	UPSTREAM CG2113 INTERGENIC
3R	25476980	3R_25476980_SNP [dm3] 3R_29651258_SNP [dm6]	A	G	1.102e^-4	0.976	INTRON Dop1R2
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	1.105e^-4	0.976	INTRON SNF4Agamma
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	1.108e^-4	0.976	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	10596260	X_10596260_SNP [dm3] X_10702227_SNP [dm6]	A	T	1.132e^-4	0.976	INTRON X11Lbeta
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	1.134e^-4	0.976	INTRON PhKgamma	TF binding site mE1_TFBS_sens
3L	1914879	3L_1914879_SNP [dm3] 3L_1914879_SNP [dm6]	G	T	1.141e^-4	0.976	INTERGENIC
2R	12614914	2R_12614914_SNP [dm3] 2R_16727409_SNP [dm6]	T	A	1.158e^-4	0.976	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14598163	3L_14598163_SNP [dm3] 3L_14605063_SNP [dm6]	T	C	1.164e^-4	0.976	INTERGENIC
3L	13408079	3L_13408079_SNP [dm3] 3L_13414979_SNP [dm6]	C	T	1.166e^-4	0.976	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21875708	X_21875708_SNP [dm3] X_22473872_SNP [dm6]	C	T	1.170e^-4	0.976	SYNONYMOUS_CODING CG14618 DOWNSTREAM CG12576	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15244958	2R_15244958_SNP [dm3] 2R_19357453_SNP [dm6]	G	A	1.179e^-4	0.976	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12480627	3R_12480627_SNP [dm3] 3R_16654905_SNP [dm6]	T	C	1.181e^-4	0.976	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	13409756	3L_13409756_SNP [dm3] 3L_13416656_SNP [dm6]	G	A	1.185e^-4	0.976	UTR_3_PRIME CG32121 DOWNSTREAM flr
2R	15868038	2R_15868038_SNP [dm3] 2R_19980533_SNP [dm6]	T	A	1.191e^-4	0.976	SPLICE_SITE_REGION CG8654 UPSTREAM CG8654 INTRON CG8654
2R	17264064	2R_17264064_SNP [dm3] 2R_21376559_SNP [dm6]	G	C	1.212e^-4	0.976	INTRON cv-2
2R	15130648	2R_15130648_SNP [dm3] 2R_19243143_SNP [dm6]	G	T	1.212e^-4	0.976	SYNONYMOUS_CODING cora
3L	5993345	3L_5993345_SNP [dm3] 3L_6000245_SNP [dm6]	T	G	1.215e^-4	0.976	INTRON PVRAP
3R	8580646	3R_8580646_SNP [dm3] 3R_12754924_SNP [dm6]	T	A	1.218e^-4	0.976	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11544582	3L_11544582_SNP [dm3] 3L_11551482_SNP [dm6]	C	T	1.228e^-4	0.976	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	1.234e^-4	0.976	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
2L	3455416	2L_3455416_SNP [dm3] 2L_3455416_SNP [dm6]	C	T	1.242e^-4	0.976	SYNONYMOUS_CODING Cog3
3L	1560975	3L_1560975_SNP [dm3] 3L_1560975_SNP [dm6]	G	T	1.252e^-4	0.976	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3L	9919159	3L_9919159_SNP [dm3] 3L_9926059_SNP [dm6]	T	C	1.256e^-4	0.976	INTRON CG34356	TF binding site mE1_TFBS_HSA
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	1.264e^-4	0.976	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	1.264e^-4	0.976	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	1.264e^-4	0.976	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9646582	2L_9646582_SNP [dm3] 2L_9646582_SNP [dm6]	C	T	1.284e^-4	0.976	SYNONYMOUS_CODING Apoltp
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	1.286e^-4	0.976	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	26122676	3R_26122676_SNP [dm3] 3R_30296954_SNP [dm6]	G	A	1.289e^-4	0.976	INTRON hdc	TF binding site mE1_TFBS_inv
2L	15001398	2L_15001398_SNP [dm3] 2L_15001398_SNP [dm6]	C	T	1.292e^-4	0.976	INTERGENIC
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	1.300e^-4	0.976	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	9415630	2L_9415630_SNP [dm3] 2L_9415630_SNP [dm6]	A	T	1.309e^-4	0.976	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	8683438	2L_8683438_SNP [dm3] 2L_8683438_SNP [dm6]	G	A	1.316e^-4	0.976	UPSTREAM tRNA:CR31890 DOWNSTREAM tRNA:CR31888 INTRON CG9289
3R	26122670	3R_26122670_SNP [dm3] 3R_30296948_SNP [dm6]	A	T	1.316e^-4	0.976	INTRON hdc	TF binding site mE1_TFBS_inv
2R	12616387	2R_12616387_SNP [dm3] 2R_16728882_SNP [dm6]	G	A	1.317e^-4	0.976	INTRON CG30463
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	1.328e^-4	0.976	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	1590752	3L_1590752_SNP [dm3] 3L_1590752_SNP [dm6]	G	A	1.333e^-4	0.976	INTRON CG13917
2R	3429714	2R_3429714_SNP [dm3] 2R_7542209_SNP [dm6]	C	T	1.341e^-4	0.976	INTRON Corin
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	1.347e^-4	0.976	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	1.347e^-4	0.976	INTRON CG6225
3L	12090909	3L_12090909_SNP [dm3] 3L_12097809_SNP [dm6]	C	A	1.353e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9646498	2L_9646498_SNP [dm3] 2L_9646498_SNP [dm6]	A	T	1.354e^-4	0.976	INTRON Apoltp
X	8104993	X_8104993_SNP [dm3] X_8210960_SNP [dm6]	T	C	1.369e^-4	0.976	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1783119	X_1783119_SNP [dm3] X_1889086_SNP [dm6]	T	G	1.384e^-4	0.976	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13591078	3R_13591078_SNP [dm3] 3R_17765356_SNP [dm6]	T	C	1.393e^-4	0.976	INTERGENIC
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	1.397e^-4	0.976	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
2R	13864324	2R_13864324_SNP [dm3] 2R_17976819_SNP [dm6]	A	G	1.397e^-4	0.976	INTRON dpr13
2R	17259705	2R_17259705_SNP [dm3] 2R_21372200_SNP [dm6]	A	T	1.397e^-4	0.976	INTRON cv-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12502575	X_12502575_SNP [dm3] X_12608542_SNP [dm6]	A	T	1.402e^-4	0.976	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
X	21942750	X_21942750_SNP [dm3] X_22540914_SNP [dm6]	T	C	1.410e^-4	0.976	UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8682482	2L_8682482_SNP [dm3] 2L_8682482_SNP [dm6]	G	A	1.416e^-4	0.976	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
3R	15659156	3R_15659156_SNP [dm3] 3R_19833434_SNP [dm6]	C	T	1.443e^-4	0.976	INTRON bnl
2L	13665798	2L_13665798_SNP [dm3] 2L_13665798_SNP [dm6]	A	C	1.454e^-4	0.976	UTR_5_PRIME CG18507	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	1.466e^-4	0.976	INTERGENIC
3R	14040896	3R_14040896_INS [dm3] 3R_18215174_INS [dm6]	A	ATA	1.478e^-4	0.976	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	transposable element FlyBase
3R	12109214	3R_12109214_SNP [dm3] 3R_16283492_SNP [dm6]	A	G	1.487e^-4	0.976	INTRON gish
2L	5497742	2L_5497742_SNP [dm3] 2L_5497742_SNP [dm6]	A	G	1.498e^-4	0.976	INTERGENIC
2R	11178066	2R_11178066_SNP [dm3] 2R_15290561_SNP [dm6]	G	A	1.512e^-4	0.976	INTRON Trpm
3L	1252985	3L_1252985_SNP [dm3] 3L_1252985_SNP [dm6]	T	C	1.515e^-4	0.976	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1748494	3L_1748494_SNP [dm3] 3L_1748494_SNP [dm6]	G	A	1.524e^-4	0.976	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	1.527e^-4	0.976	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24667803	3R_24667803_SNP [dm3] 3R_28842081_SNP [dm6]	A	T	1.533e^-4	0.976	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14325471	3L_14325471_SNP [dm3] 3L_14332371_SNP [dm6]	A	C	1.539e^-4	0.976	INTRON fz
3L	11352507	3L_11352507_SNP [dm3] 3L_11359407_SNP [dm6]	C	A	1.567e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12579710	2L_12579710_SNP [dm3] 2L_12579710_SNP [dm6]	A	G	1.576e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	11205407	3R_11205407_SNP [dm3] 3R_15379685_SNP [dm6]	C	T	1.581e^-4	0.976	INTRON Rbp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	13590950	3R_13590950_SNP [dm3] 3R_17765228_SNP [dm6]	A	C	1.583e^-4	0.976	INTERGENIC
3L	6669287	3L_6669287_SNP [dm3] 3L_6676187_SNP [dm6]	C	A	1.595e^-4	0.976	INTERGENIC
3R	14445151	3R_14445151_SNP [dm3] 3R_18619429_SNP [dm6]	T	C	1.608e^-4	0.976	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
X	21373374	X_21373374_SNP [dm3] X_21502347_SNP [dm6]	A	G	1.614e^-4	0.976	INTRON CR45082
3L	12235202	3L_12235202_SNP [dm3] 3L_12242102_SNP [dm6]	A	T	1.621e^-4	0.976	INTRON app
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	1.631e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	22149066	3R_22149066_SNP [dm3] 3R_26323344_SNP [dm6]	T	C	1.636e^-4	0.976	INTRON CG33970
3L	1404031	3L_1404031_INS [dm3] 3L_1404031_INS [dm6]	A	ACA	1.638e^-4	0.976	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17175016	2R_17175016_SNP [dm3] 2R_21287511_SNP [dm6]	C	A	1.644e^-4	0.976	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2L	15210243	2L_15210243_SNP [dm3] 2L_15210243_SNP [dm6]	C	T	1.647e^-4	0.976	INTERGENIC
X	11925550	X_11925550_SNP [dm3] X_12031517_SNP [dm6]	A	T	1.648e^-4	0.976	UPSTREAM Cyp311a1 INTERGENIC
3L	3632980	3L_3632980_INS [dm3] 3L_3632980_INS [dm6]	G	GA	1.653e^-4	0.976	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	1.671e^-4	0.976	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	22441400	3L_22441400_SNP [dm3] 3L_22448300_SNP [dm6]	A	T	1.676e^-4	0.976	INTERGENIC
2R	12653608	2R_12653608_SNP [dm3] 2R_16766103_SNP [dm6]	G	A	1.683e^-4	0.976	UPSTREAM CG5348 & 2 others INTRON unc-104
3L	18671330	3L_18671330_SNP [dm3] 3L_18678230_SNP [dm6]	A	C	1.690e^-4	0.976	DOWNSTREAM GNBP1 INTERGENIC
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	1.693e^-4	0.976	INTRON sfl
2R	16221991	2R_16221991_SNP [dm3] 2R_20334486_SNP [dm6]	G	C	1.693e^-4	0.976	INTERGENIC
X	5527310	X_5527310_SNP [dm3] X_5633277_SNP [dm6]	G	T	1.697e^-4	0.976	INTRON CG42492
X	3918834	X_3918834_DEL [dm3] X_4024801_DEL [dm6]	AA	A	1.705e^-4	0.976	INTERGENIC
3L	13627812	3L_13627812_DEL [dm3] 3L_13634712_DEL [dm6]	AGTGGC	A	1.711e^-4	0.976	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
X	517010	X_517010_DEL [dm3] X_622977_DEL [dm6]	CC	C	1.711e^-4	0.976	UTR_3_PRIME mod_r_ UPSTREAM CG13369
3L	7643462	3L_7643462_SNP [dm3] 3L_7650362_SNP [dm6]	A	T	1.712e^-4	0.976	UPSTREAM CG32373 & 1 other INTERGENIC
3R	24667789	3R_24667789_SNP [dm3] 3R_28842067_SNP [dm6]	C	G	1.731e^-4	0.976	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16429233	2R_16429233_SNP [dm3] 2R_20541728_SNP [dm6]	T	C	1.735e^-4	0.976	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1748112	3L_1748112_SNP [dm3] 3L_1748112_SNP [dm6]	C	A	1.764e^-4	0.976	UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	1.765e^-4	0.976	INTERGENIC
2L	8683603	2L_8683603_SNP [dm3] 2L_8683603_SNP [dm6]	A	T	1.771e^-4	0.976	DOWNSTREAM tRNA:CR31888 & 1 other INTRON CG9289
3R	22149069	3R_22149069_SNP [dm3] 3R_26323347_SNP [dm6]	G	A	1.771e^-4	0.976	INTRON CG33970
2R	17284478	2R_17284478_SNP [dm3] 2R_21396973_SNP [dm6]	A	G	1.784e^-4	0.976	INTRON Sdc
3R	24023297	3R_24023297_SNP [dm3] 3R_28197575_SNP [dm6]	T	C	1.785e^-4	0.976	INTRON CG34354	TF binding site mE1_TFBS_inv
2R	3428368	2R_3428368_SNP [dm3] 2R_7540863_SNP [dm6]	G	A	1.790e^-4	0.976	INTRON Corin
3L	11867256	3L_11867256_SNP [dm3] 3L_11874156_SNP [dm6]	C	T	1.802e^-4	0.976	INTRON CG44837
2L	15014526	2L_15014526_SNP [dm3] 2L_15014526_SNP [dm6]	A	G	1.802e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12616615	2R_12616615_SNP [dm3] 2R_16729110_SNP [dm6]	G	T	1.804e^-4	0.976	INTRON CG30463
3L	18857774	3L_18857774_SNP [dm3] 3L_18864674_SNP [dm6]	G	T	1.809e^-4	0.976	INTRON CG6865	silencer mE1_HDAC_PRE
X	6518623	X_6518623_SNP [dm3] X_6624590_SNP [dm6]	T	C	1.815e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8636394	2R_8636394_SNP [dm3] 2R_12748889_SNP [dm6]	T	A	1.819e^-4	0.976	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	604415	X_604415_SNP [dm3] X_710382_SNP [dm6]	C	T	1.828e^-4	0.976	INTRON sdk	TF binding site BDTNP1_TFBS_twi
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	1.831e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_cad
2L	7303684	2L_7303684_SNP [dm3] 2L_7303684_SNP [dm6]	A	G	1.837e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1665378	2L_1665378_SNP [dm3] 2L_1665378_SNP [dm6]	T	A	1.838e^-4	0.976	INTRON chinmo
3L	12609663	3L_12609663_SNP [dm3] 3L_12616563_SNP [dm6]	A	G	1.841e^-4	0.976	INTRON caup	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	8434134	2R_8434134_DEL [dm3] 2R_12546629_DEL [dm6]	AA	A	1.844e^-4	0.976	DOWNSTREAM CG33752 INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18030236	X_18030236_SNP [dm3] X_18136203_SNP [dm6]	A	G	1.852e^-4	0.976	INTRON ari-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23680932	3R_23680932_SNP [dm3] 3R_27855210_SNP [dm6]	C	T	1.853e^-4	0.976	INTRON CG34353
2R	12653754	2R_12653754_SNP [dm3] 2R_16766249_SNP [dm6]	G	A	1.857e^-4	0.976	UPSTREAM CG5348 & 2 others INTRON unc-104
X	14537296	X_14537296_SNP [dm3] X_14643263_SNP [dm6]	G	A	1.863e^-4	0.976	INTRON NetA
X	9170896	X_9170896_SNP [dm3] X_9276863_SNP [dm6]	T	C	1.864e^-4	0.976	SYNONYMOUS_CODING c11.1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10286162	X_10286162_SNP [dm3] X_10392129_SNP [dm6]	T	C	1.865e^-4	0.976	INTRON flw
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	1.876e^-4	0.976	INTRON Tango5
2R	12803907	2R_12803907_DEL [dm3] 2R_16916402_DEL [dm6]	AA	A	1.879e^-4	0.976	INTERGENIC
3R	15193332	3R_15193332_INS [dm3] 3R_19367610_INS [dm6]	A	ACAA	1.884e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	2050288	2L_2050288_SNP [dm3] 2L_2050288_SNP [dm6]	C	T	1.897e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12457614	2L_12457614_SNP [dm3] 2L_12457614_SNP [dm6]	C	A	1.900e^-4	0.976	UTR_3_PRIME bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13863702	2R_13863702_SNP [dm3] 2R_17976197_SNP [dm6]	C	A	1.902e^-4	0.976	UTR_3_PRIME dpr13
X	8068194	X_8068194_SNP [dm3] X_8174161_SNP [dm6]	T	C	1.904e^-4	0.976	SYNONYMOUS_CODING slpr
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	1.905e^-4	0.976	INTERGENIC
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	1.910e^-4	0.976	INTERGENIC
3R	18772354	3R_18772354_SNP [dm3] 3R_22946632_SNP [dm6]	G	C	1.912e^-4	0.976	INTRON klg
2R	18665379	2R_18665379_SNP [dm3] 2R_22777874_SNP [dm6]	A	G	1.921e^-4	0.976	INTRON CG42260
3L	1914452	3L_1914452_SNP [dm3] 3L_1914452_SNP [dm6]	G	A	1.926e^-4	0.976	INTERGENIC
3L	15491432	3L_15491432_SNP [dm3] 3L_15498332_SNP [dm6]	A	T	1.928e^-4	0.976	SYNONYMOUS_CODING CG7276 UPSTREAM CG7275 DOWNSTREAM CG13455	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18762524	3R_18762524_SNP [dm3] 3R_22936802_SNP [dm6]	G	A	1.929e^-4	0.976	INTRON klg
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	1.932e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	5139179	2R_5139179_SNP [dm3] 2R_9251674_SNP [dm6]	C	T	1.932e^-4	0.976	UPSTREAM CG30343 DOWNSTREAM Pkn INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2L	4013413	2L_4013413_SNP [dm3] 2L_4013413_SNP [dm6]	C	A	1.949e^-4	0.976	INTERGENIC
3L	12521556	3L_12521556_SNP [dm3] 3L_12528456_SNP [dm6]	A	G	1.956e^-4	0.976	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15031496	2L_15031496_SNP [dm3] 2L_15031496_SNP [dm6]	A	T	1.961e^-4	0.976	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3L	3015541	3L_3015541_SNP [dm3] 3L_3015541_SNP [dm6]	G	T	1.961e^-4	0.976	SYNONYMOUS_CODING CG32488 DOWNSTREAM CG32487
3L	7004384	3L_7004384_SNP [dm3] 3L_7011284_SNP [dm6]	T	G	1.962e^-4	0.976	INTRON Mp
3R	16713269	3R_16713269_SNP [dm3] 3R_20887547_SNP [dm6]	T	C	1.971e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11201413	2L_11201413_SNP [dm3] 2L_11201413_SNP [dm6]	T	G	1.983e^-4	0.976	INTRON Ca-beta
2L	1637279	2L_1637279_SNP [dm3] 2L_1637279_SNP [dm6]	C	A	1.991e^-4	0.976	INTERGENIC
3L	12330274	3L_12330274_SNP [dm3] 3L_12337174_SNP [dm6]	A	T	2.011e^-4	0.976	UTR_3_PRIME CG10418 UPSTREAM CR45444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	6099943	X_6099943_SNP [dm3] X_6205910_SNP [dm6]	C	A	2.019e^-4	0.976	INTERGENIC
3L	8413214	3L_8413214_SNP [dm3] 3L_8420114_SNP [dm6]	A	G	2.040e^-4	0.976	INTRON CG32354
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	2.041e^-4	0.976	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	19858002	3L_19858002_SNP [dm3] 3L_19864902_SNP [dm6]	G	T	2.054e^-4	0.976	INTERGENIC	transposable element FlyBase
X	12182342	X_12182342_INS [dm3] X_12288309_INS [dm6]	A	AA	2.060e^-4	0.976	INTRON Ten-a
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	2.062e^-4	0.976	INTRON CG10663
3R	17743865	3R_17743865_SNP [dm3] 3R_21918143_SNP [dm6]	T	G	2.081e^-4	0.976	INTERGENIC
2R	17574992	2R_17574992_SNP [dm3] 2R_21687487_SNP [dm6]	T	C	2.082e^-4	0.976	UTR_5_PRIME Tbp DOWNSTREAM CG30285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13337104	3L_13337104_SNP [dm3] 3L_13344004_SNP [dm6]	A	T	2.088e^-4	0.976	INTRON CR44559
3R	22486102	3R_22486102_SNP [dm3] 3R_26660380_SNP [dm6]	A	T	2.091e^-4	0.976	INTRON beat-VII
2R	20630782	2R_20630782_DEL [dm3] 2R_24743259_DEL [dm6]	GAG	G	2.098e^-4	0.976	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16083719	2R_16083719_SNP [dm3] 2R_20196214_SNP [dm6]	C	T	2.098e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	2.109e^-4	0.976	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	2.112e^-4	0.976	SYNONYMOUS_CODING plum
2L	8194614	2L_8194614_SNP [dm3] 2L_8194614_SNP [dm6]	G	T	2.118e^-4	0.976	UTR_3_PRIME CG8475 INTRON CG8475 EXON CR44116
3R	15850066	3R_15850066_SNP [dm3] 3R_20024344_SNP [dm6]	T	C	2.121e^-4	0.976	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	2.126e^-4	0.976	INTERGENIC
3L	22441450	3L_22441450_SNP [dm3] 3L_22448350_SNP [dm6]	A	T	2.139e^-4	0.976	INTERGENIC
3L	13393627	3L_13393627_SNP [dm3] 3L_13400527_SNP [dm6]	G	C	2.149e^-4	0.976	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1748333	3L_1748333_SNP [dm3] 3L_1748333_SNP [dm6]	C	G	2.153e^-4	0.976	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3889665	2L_3889665_SNP [dm3] 2L_3889665_SNP [dm6]	G	C	2.155e^-4	0.976	NON_SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
3L	10846857	3L_10846857_SNP [dm3] 3L_10853757_SNP [dm6]	T	C	2.183e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	6499976	3L_6499976_SNP [dm3] 3L_6506876_SNP [dm6]	C	T	2.196e^-4	0.976	INTRON sfl
2L	8041532	2L_8041532_SNP [dm3] 2L_8041532_SNP [dm6]	A	C	2.197e^-4	0.976	NON_SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site mE1_TFBS_sens
X	10981931	X_10981931_SNP [dm3] X_11087898_SNP [dm6]	C	T	2.198e^-4	0.976	INTERGENIC
2R	10872115	2R_10872115_SNP [dm3] 2R_14984610_SNP [dm6]	T	G	2.215e^-4	0.976	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
X	6099939	X_6099939_SNP [dm3] X_6205906_SNP [dm6]	G	C	2.219e^-4	0.976	INTERGENIC
X	2389808	X_2389808_SNP [dm3] X_2495775_SNP [dm6]	A	G	2.221e^-4	0.976	INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	5519196	3L_5519196_SNP [dm3] 3L_5526096_SNP [dm6]	A	G	2.221e^-4	0.976	INTRON Lkr
2L	3759193	2L_3759193_SNP [dm3] 2L_3759193_SNP [dm6]	A	G	2.228e^-4	0.976	UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
2R	19210542	2R_19210542_SNP [dm3] 2R_23323019_SNP [dm6]	T	C	2.241e^-4	0.976	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
X	16980035	X_16980035_SNP [dm3] X_17086002_SNP [dm6]	C	T	2.247e^-4	0.976	SYNONYMOUS_CODING CG8945
X	569102	X_569102_SNP [dm3] X_675069_SNP [dm6]	G	C	2.247e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14440871	2R_14440871_DEL [dm3] 2R_18553366_DEL [dm6]	GG	G	2.250e^-4	0.976	DOWNSTREAM GEFmeso INTERGENIC
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	2.250e^-4	0.976	INTRON CngA	TF binding site mE1_TFBS_inv
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	2.258e^-4	0.976	INTERGENIC
2R	18980870	2R_18980870_SNP [dm3] 2R_23093347_SNP [dm6]	A	G	2.259e^-4	0.976	INTRON CG9876
3L	14538623	3L_14538623_SNP [dm3] 3L_14545523_SNP [dm6]	C	G	2.260e^-4	0.976	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16083698	2R_16083698_SNP [dm3] 2R_20196193_SNP [dm6]	A	G	2.263e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16083730	2R_16083730_SNP [dm3] 2R_20196225_SNP [dm6]	T	A	2.263e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16713209	3R_16713209_SNP [dm3] 3R_20887487_SNP [dm6]	T	C	2.264e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
3R	14445160	3R_14445160_SNP [dm3] 3R_18619438_SNP [dm6]	A	C	2.266e^-4	0.976	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	2.283e^-4	0.976	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12177936	2R_12177936_SNP [dm3] 2R_16290431_SNP [dm6]	C	T	2.284e^-4	0.976	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24541321	3R_24541321_SNP [dm3] 3R_28715599_SNP [dm6]	C	T	2.296e^-4	0.976	SPLICE_SITE_REGION htt SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	8333409	2L_8333409_SNP [dm3] 2L_8333409_SNP [dm6]	T	C	2.296e^-4	0.976	DOWNSTREAM CG14275 INTERGENIC
3R	18574100	3R_18574100_SNP [dm3] 3R_22748378_SNP [dm6]	G	A	2.300e^-4	0.976	NON_SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16142869	2R_16142869_SNP [dm3] 2R_20255364_SNP [dm6]	T	A	2.309e^-4	0.976	UPSTREAM CG9864 INTRON Ate1
2L	16217455	2L_16217455_SNP [dm3] 2L_16217455_SNP [dm6]	C	T	2.320e^-4	0.976	UPSTREAM CR43840 INTERGENIC
2L	1344305	2L_1344305_SNP [dm3] 2L_1344305_SNP [dm6]	G	T	2.322e^-4	0.976	UPSTREAM Cdlc2 & 1 other INTERGENIC
3L	1914895	3L_1914895_SNP [dm3] 3L_1914895_SNP [dm6]	G	A	2.330e^-4	0.976	INTERGENIC
2R	8141633	2R_8141633_SNP [dm3] 2R_12254128_SNP [dm6]	G	C	2.332e^-4	0.976	UTR_5_PRIME CG13168
X	5539353	X_5539353_SNP [dm3] X_5645320_SNP [dm6]	A	G	2.333e^-4	0.976	INTRON CG42492
3L	6669220	3L_6669220_SNP [dm3] 3L_6676120_SNP [dm6]	T	A	2.336e^-4	0.976	INTERGENIC
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	2.338e^-4	0.976	INTERGENIC
2L	8263633	2L_8263633_SNP [dm3] 2L_8263633_SNP [dm6]	C	T	2.339e^-4	0.976	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
X	17160375	X_17160375_SNP [dm3] X_17266342_SNP [dm6]	C	T	2.342e^-4	0.976	INTRON f
3R	13985549	3R_13985549_SNP [dm3] 3R_18159827_SNP [dm6]	T	C	2.366e^-4	0.976	DOWNSTREAM CG14315 EXON CR45104
2R	11178078	2R_11178078_SNP [dm3] 2R_15290573_SNP [dm6]	A	C	2.374e^-4	0.976	INTRON Trpm
2R	3428621	2R_3428621_SNP [dm3] 2R_7541116_SNP [dm6]	C	T	2.406e^-4	0.976	INTRON Corin
X	570213	X_570213_SNP [dm3] X_676180_SNP [dm6]	G	A	2.411e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7622192	2R_7622192_SNP [dm3] 2R_11734687_SNP [dm6]	A	T	2.416e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
X	16824361	X_16824361_SNP [dm3] X_16930328_SNP [dm6]	A	T	2.420e^-4	0.976	INTRON CG4928
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	2.421e^-4	0.976	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13309029	3L_13309029_SNP [dm3] 3L_13315929_SNP [dm6]	C	T	2.425e^-4	0.976	INTERGENIC
2R	12616609	2R_12616609_SNP [dm3] 2R_16729104_SNP [dm6]	C	T	2.431e^-4	0.976	INTRON CG30463
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	2.433e^-4	0.976	UTR_3_PRIME Elf
3R	17332992	3R_17332992_SNP [dm3] 3R_21507270_SNP [dm6]	A	G	2.439e^-4	0.976	SYNONYMOUS_CODING C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	2.442e^-4	0.976	INTRON gish	TF binding site BDTNP1_TFBS_dl
2R	13277003	2R_13277003_SNP [dm3] 2R_17389498_SNP [dm6]	C	A	2.443e^-4	0.976	UPSTREAM CR44344 INTERGENIC	TF binding site mE1_TFBS_Kr
3R	27588730	3R_27588730_SNP [dm3] 3R_31763008_SNP [dm6]	A	G	2.445e^-4	0.976	DOWNSTREAM CG2150 INTERGENIC
2L	1669112	2L_1669112_INS [dm3] 2L_1669112_INS [dm6]	T	TT	2.466e^-4	0.976	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	2.468e^-4	0.976	INTRON fz
3L	10852664	3L_10852664_SNP [dm3] 3L_10859564_SNP [dm6]	G	T	2.470e^-4	0.976	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn
3R	14079535	3R_14079535_SNP [dm3] 3R_18253813_SNP [dm6]	T	C	2.472e^-4	0.976	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
2L	21968927	2L_21968927_SNP [dm3] 2L_21968927_SNP [dm6]	G	A	2.497e^-4	0.976	INTERGENIC	transposable element FlyBase
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	2.503e^-4	0.976	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	9284837	X_9284837_SNP [dm3] X_9390804_SNP [dm6]	T	G	2.503e^-4	0.976	INTRON mgl
2L	16176592	2L_16176592_SNP [dm3] 2L_16176592_SNP [dm6]	A	G	2.504e^-4	0.976	SPLICE_SITE_REGION Ca-alpha1D SYNONYMOUS_CODING Ca-alpha1D
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	2.506e^-4	0.976	INTRON gish
3R	16289156	3R_16289156_SNP [dm3] 3R_20463434_SNP [dm6]	T	C	2.510e^-4	0.976	INTRON Gfrl
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	2.515e^-4	0.976	DOWNSTREAM CG14476 INTERGENIC
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	2.516e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	18629234	3L_18629234_SNP [dm3] 3L_18636134_SNP [dm6]	A	C	2.516e^-4	0.976	INTRON MYPT-75D
X	559325	X_559325_SNP [dm3] X_665292_SNP [dm6]	C	A	2.516e^-4	0.976	INTERGENIC
3R	24686739	3R_24686739_SNP [dm3] 3R_28861017_SNP [dm6]	T	G	2.517e^-4	0.976	INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15581705	3L_15581705_SNP [dm3] 3L_15588605_SNP [dm6]	C	T	2.524e^-4	0.976	UPSTREAM RhoGAP71E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11009377	3L_11009377_SNP [dm3] 3L_11016277_SNP [dm6]	G	C	2.528e^-4	0.976	INTERGENIC
2R	20115444	2R_20115444_SNP [dm3] 2R_24227921_SNP [dm6]	A	G	2.546e^-4	0.976	INTRON CG30419
3R	13811377	3R_13811377_SNP [dm3] 3R_17985655_SNP [dm6]	G	A	2.550e^-4	0.976	INTRON cpo
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	2.550e^-4	0.976	INTRON phl & 1 other
2L	14569669	2L_14569669_SNP [dm3] 2L_14569669_SNP [dm6]	T	C	2.556e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18581558	3R_18581558_SNP [dm3] 3R_22755836_SNP [dm6]	A	T	2.559e^-4	0.976	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10093888	2R_10093888_SNP [dm3] 2R_14206383_SNP [dm6]	C	G	2.580e^-4	0.976	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	7508653	2R_7508653_SNP [dm3] 2R_11621148_SNP [dm6]	C	T	2.582e^-4	0.976	SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1688535	3L_1688535_SNP [dm3] 3L_1688535_SNP [dm6]	A	G	2.585e^-4	0.976	UPSTREAM CG7991 INTRON CG7991	TF binding site BDTNP1_TFBS_twi
2L	4417105	2L_4417105_SNP [dm3] 2L_4417105_SNP [dm6]	T	C	2.588e^-4	0.976	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3L	4318048	3L_4318048_SNP [dm3] 3L_4318048_SNP [dm6]	C	T	2.589e^-4	0.976	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16824362	X_16824362_SNP [dm3] X_16930329_SNP [dm6]	C	T	2.593e^-4	0.976	INTRON CG4928
3L	13309316	3L_13309316_SNP [dm3] 3L_13316216_SNP [dm6]	G	A	2.593e^-4	0.976	INTERGENIC
2R	20745347	2R_20745347_DEL [dm3] 2R_24857824_DEL [dm6]	GCG	G	2.598e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	2.598e^-4	0.976	INTRON pgant2
2R	13435137	2R_13435137_SNP [dm3] 2R_17547632_SNP [dm6]	T	C	2.603e^-4	0.976	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6465157	2L_6465157_SNP [dm3] 2L_6465157_SNP [dm6]	G	A	2.618e^-4	0.976	INTRON CG16947	TF binding site mE1_TFBS_cad
3L	16531253	3L_16531253_SNP [dm3] 3L_16538153_SNP [dm6]	C	T	2.629e^-4	0.976	INTRON CG43373
2R	17579719	2R_17579719_SNP [dm3] 2R_21692214_SNP [dm6]	A	T	2.629e^-4	0.976	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3R	18184751	3R_18184751_SNP [dm3] 3R_22359029_SNP [dm6]	T	A	2.629e^-4	0.976	INTRON Sar1
3R	22485978	3R_22485978_SNP [dm3] 3R_26660256_SNP [dm6]	A	G	2.633e^-4	0.976	INTRON beat-VII
3R	22485985	3R_22485985_SNP [dm3] 3R_26660263_SNP [dm6]	A	C	2.633e^-4	0.976	INTRON beat-VII
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	2.634e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	11185829	2L_11185829_SNP [dm3] 2L_11185829_SNP [dm6]	A	G	2.641e^-4	0.976	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8193749	X_8193749_INS [dm3] X_8299716_INS [dm6]	A	ACA	2.649e^-4	0.976	INTRON nAChRalpha3
2R	17175006	2R_17175006_SNP [dm3] 2R_21287501_SNP [dm6]	A	G	2.653e^-4	0.976	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	23178850	3R_23178850_SNP [dm3] 3R_27353128_SNP [dm6]	T	G	2.664e^-4	0.976	INTRON CG42534
3R	9867519	3R_9867519_SNP [dm3] 3R_14041797_SNP [dm6]	A	G	2.674e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17777647	X_17777647_SNP [dm3] X_17883614_SNP [dm6]	G	A	2.683e^-4	0.976	UPSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12164188	3L_12164188_SNP [dm3] 3L_12171088_SNP [dm6]	T	G	2.688e^-4	0.976	INTRON Rh7
3L	8034458	3L_8034458_SNP [dm3] 3L_8041358_SNP [dm6]	T	A	2.696e^-4	0.976	INTRON nmo
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	2.712e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6427058	3L_6427058_DEL [dm3] 3L_6433958_DEL [dm6]	TT	T	2.712e^-4	0.976	INTRON CG42747
2R	12275127	2R_12275127_SNP [dm3] 2R_16387622_SNP [dm6]	A	G	2.723e^-4	0.976	INTRON Sema-2b	TF binding site BDTNP1_TFBS_Med
2R	17739350	2R_17739350_DEL [dm3] 2R_21851845_DEL [dm6]	TA	T	2.732e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
2R	12177933	2R_12177933_SNP [dm3] 2R_16290428_SNP [dm6]	T	C	2.734e^-4	0.976	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12804957	2R_12804957_DEL [dm3] 2R_16917452_DEL [dm6]	TG	T	2.736e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
2L	19885070	2L_19885070_SNP [dm3] 2L_19885070_SNP [dm6]	A	T	2.739e^-4	0.976	INTRON sick
3L	5628414	3L_5628414_SNP [dm3] 3L_5635314_SNP [dm6]	G	T	2.742e^-4	0.976	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	14594418	3L_14594418_SNP [dm3] 3L_14601318_SNP [dm6]	T	A	2.747e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	20751294	X_20751294_SNP [dm3] X_20880267_SNP [dm6]	T	C	2.751e^-4	0.976	INTRON shakB	transposable element FlyBase
3L	14058880	3L_14058880_SNP [dm3] 3L_14065780_SNP [dm6]	A	G	2.753e^-4	0.976	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
3R	18960931	3R_18960931_SNP [dm3] 3R_23135209_SNP [dm6]	G	A	2.756e^-4	0.976	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20405565	X_20405565_SNP [dm3] X_20534538_SNP [dm6]	G	A	2.759e^-4	0.976	INTERGENIC
X	5563611	X_5563611_SNP [dm3] X_5669578_SNP [dm6]	G	A	2.765e^-4	0.976	NON_SYNONYMOUS_CODING CG4119	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3693283	2L_3693283_SNP [dm3] 2L_3693283_SNP [dm6]	T	G	2.766e^-4	0.976	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
X	570113	X_570113_SNP [dm3] X_676080_SNP [dm6]	A	G	2.773e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3063765	2L_3063765_SNP [dm3] 2L_3063765_SNP [dm6]	A	G	2.781e^-4	0.976	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13845173	2L_13845173_SNP [dm3] 2L_13845173_SNP [dm6]	A	G	2.785e^-4	0.976	INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
2L	1020916	2L_1020916_SNP [dm3] 2L_1020916_SNP [dm6]	T	C	2.796e^-4	0.976	INTRON IA-2
3L	12394465	3L_12394465_SNP [dm3] 3L_12401365_SNP [dm6]	C	T	2.806e^-4	0.976	SYNONYMOUS_CODING Smyd4 DOWNSTREAM CG32103	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12023886	2R_12023886_SNP [dm3] 2R_16136381_SNP [dm6]	C	T	2.816e^-4	0.976	INTRON spin
2L	19895668	2L_19895668_SNP [dm3] 2L_19895668_SNP [dm6]	C	T	2.816e^-4	0.976	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3L	10846861	3L_10846861_SNP [dm3] 3L_10853761_SNP [dm6]	T	A	2.820e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	2.820e^-4	0.976	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
X	465384	X_465384_SNP [dm3] X_571351_SNP [dm6]	A	G	2.828e^-4	0.976	SPLICE_SITE_REGION Appl SYNONYMOUS_CODING Appl
2R	14166202	2R_14166202_SNP [dm3] 2R_18278697_SNP [dm6]	G	A	2.829e^-4	0.976	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
2R	15828816	2R_15828816_SNP [dm3] 2R_19941311_SNP [dm6]	A	G	2.840e^-4	0.976	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7046649	2R_7046649_SNP [dm3] 2R_11159144_SNP [dm6]	A	C	2.840e^-4	0.976	UTR_5_PRIME shn INTRON CG13229	TF binding site BDTNP1_TFBS_twi
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	2.848e^-4	0.976	UPSTREAM PH4alphaNE3 INTRON CG31021
2R	12275190	2R_12275190_SNP [dm3] 2R_16387685_SNP [dm6]	A	G	2.850e^-4	0.976	INTRON Sema-2b
2L	13799536	2L_13799536_SNP [dm3] 2L_13799536_SNP [dm6]	C	A	2.852e^-4	0.976	UTR_3_PRIME Sec71
2R	17739307	2R_17739307_SNP [dm3] 2R_21851802_SNP [dm6]	A	G	2.857e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21084980	3R_21084980_SNP [dm3] 3R_25259258_SNP [dm6]	T	C	2.866e^-4	0.976	UTR_5_PRIME CG11857 DOWNSTREAM Nup358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	574558	X_574558_SNP [dm3] X_680525_SNP [dm6]	G	C	2.878e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	2.890e^-4	0.976	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
3R	8380062	3R_8380062_SNP [dm3] 3R_12554340_SNP [dm6]	G	A	2.897e^-4	0.976	SYNONYMOUS_CODING Octbeta2R
3R	8383667	3R_8383667_SNP [dm3] 3R_12557945_SNP [dm6]	C	T	2.900e^-4	0.976	INTRON Octbeta2R
3R	14971100	3R_14971100_SNP [dm3] 3R_19145378_SNP [dm6]	C	T	2.903e^-4	0.976	INTRON Ppcs
3L	15261121	3L_15261121_SNP [dm3] 3L_15268021_SNP [dm6]	A	T	2.904e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	2.908e^-4	0.976	INTRON gish
2L	3557565	2L_3557565_SNP [dm3] 2L_3557565_SNP [dm6]	A	G	2.912e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	2.914e^-4	0.976	INTERGENIC
X	5915176	X_5915176_SNP [dm3] X_6021143_SNP [dm6]	T	G	2.915e^-4	0.976	INTERGENIC
3R	25168474	3R_25168474_SNP [dm3] 3R_29342752_SNP [dm6]	T	A	2.926e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
X	19725022	X_19725022_INS [dm3] X_19830989_INS [dm6]	A	AG	2.931e^-4	0.976	UTR_3_PRIME pico DOWNSTREAM pico
X	544008	X_544008_SNP [dm3] X_649975_SNP [dm6]	C	T	2.933e^-4	0.976	UTR_3_PRIME Hmt4-20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11988621	2R_11988621_SNP [dm3] 2R_16101116_SNP [dm6]	C	T	2.940e^-4	0.976	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3R	19073184	3R_19073184_SNP [dm3] 3R_23247462_SNP [dm6]	G	A	2.942e^-4	0.976	INTRON CG4467
3L	2357622	3L_2357622_INS [dm3] 3L_2357622_INS [dm6]	A	ATATTTACA	2.942e^-4	0.976	INTERGENIC
3R	23178852	3R_23178852_DEL [dm3] 3R_27353130_DEL [dm6]	CTT	C	2.951e^-4	0.976	INTRON CG42534
2L	15542792	2L_15542792_SNP [dm3] 2L_15542792_SNP [dm6]	G	A	2.951e^-4	0.976	INTERGENIC
2R	15828835	2R_15828835_SNP [dm3] 2R_19941330_SNP [dm6]	C	T	2.952e^-4	0.976	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22441460	3L_22441460_SNP [dm3] 3L_22448360_SNP [dm6]	T	A	2.962e^-4	0.976	INTERGENIC
3L	13982151	3L_13982151_SNP [dm3] 3L_13989051_SNP [dm6]	G	A	2.963e^-4	0.976	DOWNSTREAM CG9040 INTRON CG17364
3R	19062860	3R_19062860_SNP [dm3] 3R_23237138_SNP [dm6]	C	A	2.963e^-4	0.976	INTRON CG4467
3L	18858111	3L_18858111_SNP [dm3] 3L_18865011_SNP [dm6]	A	T	2.977e^-4	0.976	SYNONYMOUS_CODING CG6865	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	3662367	3L_3662367_SNP [dm3] 3L_3662367_SNP [dm6]	G	C	2.980e^-4	0.976	INTERGENIC
2R	17756543	2R_17756543_SNP [dm3] 2R_21869038_SNP [dm6]	T	G	2.987e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	2.995e^-4	0.976	INTERGENIC
3L	10522371	3L_10522371_SNP [dm3] 3L_10529271_SNP [dm6]	C	T	2.998e^-4	0.976	INTRON A2bp1
3L	13407492	3L_13407492_SNP [dm3] 3L_13414392_SNP [dm6]	A	G	2.998e^-4	0.976	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
X	21337190	X_21337190_SNP [dm3] X_21466163_SNP [dm6]	G	C	3.018e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
2R	4033755	2R_4033755_SNP [dm3] 2R_8146250_SNP [dm6]	A	C	3.020e^-4	0.976	UPSTREAM Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22299796	3R_22299796_SNP [dm3] 3R_26474074_SNP [dm6]	G	A	3.028e^-4	0.976	SYNONYMOUS_CODING plum
3R	13065020	3R_13065020_SNP [dm3] 3R_17239298_SNP [dm6]	A	T	3.030e^-4	0.976	INTRON beat-IIb
X	4083839	X_4083839_SNP [dm3] X_4189806_SNP [dm6]	C	T	3.036e^-4	0.976	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13709205	3L_13709205_SNP [dm3] 3L_13716105_SNP [dm6]	A	G	3.037e^-4	0.976	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13931164	3R_13931164_SNP [dm3] 3R_18105442_SNP [dm6]	C	T	3.039e^-4	0.976	INTRON sr
2L	19915691	2L_19915691_SNP [dm3] 2L_19915691_SNP [dm6]	T	C	3.047e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_bab1
3L	10846975	3L_10846975_SNP [dm3] 3L_10853875_SNP [dm6]	T	A	3.049e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	4635686	3L_4635686_SNP [dm3] 3L_4635686_SNP [dm6]	A	G	3.050e^-4	0.976	UPSTREAM CG13716 DOWNSTREAM axo INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	1642528	2L_1642528_SNP [dm3] 2L_1642528_SNP [dm6]	A	T	3.053e^-4	0.976	INTERGENIC
2L	10041256	2L_10041256_SNP [dm3] 2L_10041256_SNP [dm6]	T	C	3.072e^-4	0.976	INTERGENIC
3L	1263330	3L_1263330_SNP [dm3] 3L_1263330_SNP [dm6]	T	G	3.076e^-4	0.976	INTRON CG9134
3L	14480825	3L_14480825_SNP [dm3] 3L_14487725_SNP [dm6]	G	A	3.086e^-4	0.976	INTRON bbg
X	21383879	X_21383879_SNP [dm3] X_21512852_SNP [dm6]	G	C	3.088e^-4	0.976	INTRON CR45082
X	517233	X_517233_SNP [dm3] X_623200_SNP [dm6]	T	A	3.091e^-4	0.976	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
3L	18857795	3L_18857795_DEL [dm3] 3L_18864695_DEL [dm6]	TT	T	3.097e^-4	0.976	INTRON CG6865	silencer mE1_HDAC_PRE
2R	17574993	2R_17574993_DEL [dm3] 2R_21687488_DEL [dm6]	TT	T	3.101e^-4	0.976	UTR_5_PRIME Tbp DOWNSTREAM CG30285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19875610	2L_19875610_SNP [dm3] 2L_19875610_SNP [dm6]	G	T	3.106e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_cad
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	3.106e^-4	0.976	INTERGENIC
X	14334453	X_14334453_INS [dm3] X_14440420_INS [dm6]	A	AA	3.107e^-4	0.976	INTRON dpr8
2R	1968982	2R_1968982_SNP [dm3] 2R_6081477_SNP [dm6]	A	G	3.117e^-4	0.976	UPSTREAM CG14590 INTRON Ars2
2R	20188513	2R_20188513_SNP [dm3] 2R_24300990_SNP [dm6]	C	A	3.135e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21337252	X_21337252_INS [dm3] X_21466225_INS [dm6]	A	ACATA	3.136e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
2R	20742994	2R_20742994_SNP [dm3] 2R_24855471_SNP [dm6]	C	A	3.146e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	573923	X_573923_SNP [dm3] X_679890_SNP [dm6]	A	C	3.155e^-4	0.976	INTERGENIC
X	5109871	X_5109871_SNP [dm3] X_5215838_SNP [dm6]	A	G	3.156e^-4	0.976	INTRON CG15465 & 1 other
X	16762881	X_16762881_SNP [dm3] X_16868848_SNP [dm6]	A	G	3.156e^-4	0.976	INTRON CG13003
X	5967597	X_5967597_SNP [dm3] X_6073564_SNP [dm6]	C	A	3.158e^-4	0.976	UPSTREAM Tsp5D INTRON Tsp5D
3L	14480829	3L_14480829_SNP [dm3] 3L_14487729_SNP [dm6]	T	A	3.164e^-4	0.976	INTRON bbg
2R	12055904	2R_12055904_SNP [dm3] 2R_16168399_SNP [dm6]	C	T	3.167e^-4	0.976	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15235960	2R_15235960_SNP [dm3] 2R_19348455_SNP [dm6]	A	G	3.170e^-4	0.976	INTRON Rgk1
2L	12194886	2L_12194886_SNP [dm3] 2L_12194886_SNP [dm6]	T	C	3.173e^-4	0.976	INTRON aret
3L	18364446	3L_18364446_SNP [dm3] 3L_18371346_SNP [dm6]	T	C	3.174e^-4	0.976	INTERGENIC
3L	18364450	3L_18364450_SNP [dm3] 3L_18371350_SNP [dm6]	C	T	3.174e^-4	0.976	INTERGENIC
3L	18671347	3L_18671347_SNP [dm3] 3L_18678247_SNP [dm6]	A	G	3.178e^-4	0.976	DOWNSTREAM GNBP1 INTERGENIC
3R	18499204	3R_18499204_SNP [dm3] 3R_22673482_SNP [dm6]	T	A	3.180e^-4	0.976	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	3.182e^-4	0.976	INTERGENIC
2R	18563878	2R_18563878_SNP [dm3] 2R_22676373_SNP [dm6]	A	G	3.186e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	12109372	3R_12109372_SNP [dm3] 3R_16283650_SNP [dm6]	A	T	3.193e^-4	0.976	INTRON gish
2L	19879742	2L_19879742_INS [dm3] 2L_19879742_INS [dm6]	A	AT	3.207e^-4	0.976	INTRON sick
X	555451	X_555451_SNP [dm3] X_661418_SNP [dm6]	T	C	3.210e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3082190	2L_3082190_SNP [dm3] 2L_3082190_SNP [dm6]	A	G	3.221e^-4	0.976	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15244969	2R_15244969_SNP [dm3] 2R_19357464_SNP [dm6]	G	A	3.225e^-4	0.976	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8334022	2L_8334022_SNP [dm3] 2L_8334022_SNP [dm6]	C	T	3.226e^-4	0.976	INTERGENIC
3R	13354118	3R_13354118_SNP [dm3] 3R_17528396_SNP [dm6]	A	G	3.226e^-4	0.976	INTERGENIC
2R	9315369	2R_9315369_SNP [dm3] 2R_13427864_SNP [dm6]	T	A	3.239e^-4	0.976	INTRON CG42321	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	19822920	2L_19822920_SNP [dm3] 2L_19822920_SNP [dm6]	G	T	3.240e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	17798610	2L_17798610_SNP [dm3] 2L_17798610_SNP [dm6]	C	G	3.243e^-4	0.976	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2R	12064823	2R_12064823_SNP [dm3] 2R_16177318_SNP [dm6]	G	C	3.245e^-4	0.976	INTRON Ptp52F
3L	6152267	3L_6152267_SNP [dm3] 3L_6159167_SNP [dm6]	A	C	3.248e^-4	0.976	UPSTREAM Cpr65Ay INTERGENIC
3R	4420274	3R_4420274_SNP [dm3] 3R_8594552_SNP [dm6]	T	A	3.250e^-4	0.976	INTRON 5-HT2B
3R	22010133	3R_22010133_SNP [dm3] 3R_26184411_SNP [dm6]	A	T	3.259e^-4	0.976	SPLICE_SITE_REGION CG31323 UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10728519	3R_10728519_DEL [dm3] 3R_14902797_DEL [dm6]	AA	A	3.284e^-4	0.976	UTR_3_PRIME VhaPPA1-1
3L	3384723	3L_3384723_SNP [dm3] 3L_3384723_SNP [dm6]	G	T	3.284e^-4	0.976	INTERGENIC
2R	10864084	2R_10864084_SNP [dm3] 2R_14976579_SNP [dm6]	A	G	3.308e^-4	0.976	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	15134591	3R_15134591_SNP [dm3] 3R_19308869_SNP [dm6]	T	C	3.308e^-4	0.976	INTRON Dl
3L	13476983	3L_13476983_SNP [dm3] 3L_13483883_SNP [dm6]	C	A	3.314e^-4	0.976	UTR_3_PRIME Abp1 DOWNSTREAM stv	TF binding site mE1_TFBS_cad
3L	14538584	3L_14538584_DEL [dm3] 3L_14545484_DEL [dm6]	GCCTCGTTTTGTG...	G	3.316e^-4	0.976	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4447828	3L_4447828_SNP [dm3] 3L_4447828_SNP [dm6]	T	C	3.331e^-4	0.976	UTR_3_PRIME CG12607 INTRON CG12607
3R	14079539	3R_14079539_SNP [dm3] 3R_18253817_SNP [dm6]	C	A	3.332e^-4	0.976	STOP_GAINED Ada2a INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
3R	15637381	3R_15637381_DEL [dm3] 3R_19811659_DEL [dm6]	AA	A	3.334e^-4	0.976	INTRON bnl
2R	12267078	2R_12267078_SNP [dm3] 2R_16379573_SNP [dm6]	G	C	3.338e^-4	0.976	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	13379696	3L_13379696_SNP [dm3] 3L_13386596_SNP [dm6]	T	A	3.348e^-4	0.976	SPLICE_SITE_REGION CG10171 DOWNSTREAM CG14110 INTRON CG10171	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	6845730	3R_6845730_SNP [dm3] 3R_11020008_SNP [dm6]	G	A	3.353e^-4	0.976	INTRON CG34114
X	5533072	X_5533072_SNP [dm3] X_5639039_SNP [dm6]	A	C	3.355e^-4	0.976	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4033443	2R_4033443_SNP [dm3] 2R_8145938_SNP [dm6]	T	C	3.358e^-4	0.976	UTR_5_PRIME Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	3.376e^-4	0.976	INTRON CG14082
2L	7126771	2L_7126771_SNP [dm3] 2L_7126771_SNP [dm6]	C	T	3.376e^-4	0.976	INTRON Pvf3
2L	1886282	2L_1886282_SNP [dm3] 2L_1886282_SNP [dm6]	C	A	3.386e^-4	0.976	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6427029	3L_6427029_SNP [dm3] 3L_6433929_SNP [dm6]	C	T	3.389e^-4	0.976	INTRON CG42747
2L	8334254	2L_8334254_SNP [dm3] 2L_8334254_SNP [dm6]	T	A	3.397e^-4	0.976	INTERGENIC
2R	15993051	2R_15993051_SNP [dm3] 2R_20105546_SNP [dm6]	A	G	3.397e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	19742650	2R_19742650_SNP [dm3] 2R_23855127_SNP [dm6]	C	G	3.409e^-4	0.976	SYNONYMOUS_CODING bgcn DOWNSTREAM wibg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16863739	2L_16863739_SNP [dm3] 2L_16863739_SNP [dm6]	T	A	3.421e^-4	0.976	INTERGENIC
3R	25476978	3R_25476978_SNP [dm3] 3R_29651256_SNP [dm6]	C	A	3.423e^-4	0.976	INTRON Dop1R2
2R	18663342	2R_18663342_SNP [dm3] 2R_22775837_SNP [dm6]	C	A	3.430e^-4	0.976	INTRON CG42260
3L	7284343	3L_7284343_INS [dm3] 3L_7291243_INS [dm6]	C	CAA	3.438e^-4	0.976	INTRON unc-13-4A
X	21383874	X_21383874_SNP [dm3] X_21512847_SNP [dm6]	A	G	3.445e^-4	0.976	INTRON CR45082
2L	1641714	2L_1641714_SNP [dm3] 2L_1641714_SNP [dm6]	C	T	3.446e^-4	0.976	INTERGENIC
X	6518605	X_6518605_SNP [dm3] X_6624572_SNP [dm6]	G	A	3.448e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1913678	3L_1913678_SNP [dm3] 3L_1913678_SNP [dm6]	A	G	3.457e^-4	0.976	INTERGENIC
3R	19195433	3R_19195433_SNP [dm3] 3R_23369711_SNP [dm6]	G	A	3.459e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20388289	2L_20388289_SNP [dm3] 2L_20388289_SNP [dm6]	T	C	3.462e^-4	0.976	INTRON CG10947
2R	12275199	2R_12275199_SNP [dm3] 2R_16387694_SNP [dm6]	C	A	3.464e^-4	0.976	INTRON Sema-2b
3R	21009064	3R_21009064_SNP [dm3] 3R_25183342_SNP [dm6]	T	C	3.478e^-4	0.976	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19732673	2L_19732673_SNP [dm3] 2L_19732673_SNP [dm6]	G	T	3.479e^-4	0.976	NON_SYNONYMOUS_CODING CG10462 DOWNSTREAM Lar INTRON CG10462
2L	3082191	2L_3082191_SNP [dm3] 2L_3082191_SNP [dm6]	A	T	3.482e^-4	0.976	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8622171	X_8622171_SNP [dm3] X_8728138_SNP [dm6]	C	A	3.484e^-4	0.976	INTERGENIC
2L	19397189	2L_19397189_SNP [dm3] 2L_19397189_SNP [dm6]	G	T	3.491e^-4	0.976	DOWNSTREAM CG31798 INTRON CG17544	TF binding site mE1_TFBS_Trl
2R	18561373	2R_18561373_SNP [dm3] 2R_22673868_SNP [dm6]	G	C	3.493e^-4	0.976	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
3R	15650820	3R_15650820_SNP [dm3] 3R_19825098_SNP [dm6]	T	G	3.497e^-4	0.976	INTRON bnl
2R	12267209	2R_12267209_SNP [dm3] 2R_16379704_SNP [dm6]	C	T	3.500e^-4	0.976	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	9693586	3L_9693586_DEL [dm3] 3L_9700486_DEL [dm6]	AACGTGA	A	3.508e^-4	0.976	DOWNSTREAM CG6761 & 1 other INTERGENIC
2R	12004296	2R_12004296_SNP [dm3] 2R_16116791_SNP [dm6]	G	A	3.525e^-4	0.976	UTR_3_PRIME Asph UPSTREAM Jhedup
2L	7354343	2L_7354343_INS [dm3] 2L_7354343_INS [dm6]	C	CAACA	3.533e^-4	0.976	INTERGENIC
2R	12804424	2R_12804424_SNP [dm3] 2R_16916919_SNP [dm6]	A	G	3.535e^-4	0.976	INTERGENIC
3R	19464387	3R_19464387_SNP [dm3] 3R_23638665_SNP [dm6]	A	C	3.538e^-4	0.976	INTRON CG31145
2L	3454617	2L_3454617_SNP [dm3] 2L_3454617_SNP [dm6]	T	C	3.547e^-4	0.976	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
2L	3454818	2L_3454818_SNP [dm3] 2L_3454818_SNP [dm6]	A	G	3.547e^-4	0.976	SYNONYMOUS_CODING Cog3
X	2372952	X_2372952_SNP [dm3] X_2478919_SNP [dm6]	G	T	3.547e^-4	0.976	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
2R	9509821	2R_9509821_SNP [dm3] 2R_13622316_SNP [dm6]	G	A	3.551e^-4	0.976	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9509828	2R_9509828_SNP [dm3] 2R_13622323_SNP [dm6]	A	T	3.551e^-4	0.976	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	9865097	2L_9865097_SNP [dm3] 2L_9865097_SNP [dm6]	G	A	3.551e^-4	0.976	INTRON nAChRalpha6
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	3.553e^-4	0.976	INTERGENIC
2R	15130708	2R_15130708_SNP [dm3] 2R_19243203_SNP [dm6]	C	T	3.560e^-4	0.976	INTRON cora
X	12502182	X_12502182_SNP [dm3] X_12608149_SNP [dm6]	C	T	3.571e^-4	0.976	SYNONYMOUS_CODING Sec16 DOWNSTREAM Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15433604	2R_15433604_SNP [dm3] 2R_19546099_SNP [dm6]	A	G	3.572e^-4	0.976	INTRON sm	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	23230851	3R_23230851_SNP [dm3] 3R_27405129_SNP [dm6]	C	T	3.573e^-4	0.976	INTRON side
X	8068388	X_8068388_SNP [dm3] X_8174355_SNP [dm6]	C	T	3.573e^-4	0.976	INTRON slpr
2L	13845149	2L_13845149_SNP [dm3] 2L_13845149_SNP [dm6]	G	C	3.594e^-4	0.976	INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
3R	16253268	3R_16253268_SNP [dm3] 3R_20427546_SNP [dm6]	A	T	3.601e^-4	0.976	INTRON Gfrl
3R	18184732	3R_18184732_SNP [dm3] 3R_22359010_SNP [dm6]	G	A	3.604e^-4	0.976	INTRON Sar1
2R	13284443	2R_13284443_SNP [dm3] 2R_17396938_SNP [dm6]	T	A	3.606e^-4	0.976	INTRON Sip1
X	21461363	X_21461363_SNP [dm3] X_21590336_SNP [dm6]	C	G	3.620e^-4	0.976	INTERGENIC
3L	12796522	3L_12796522_SNP [dm3] 3L_12803422_SNP [dm6]	C	T	3.625e^-4	0.976	INTRON Atg1	TF binding site BDTNP1_TFBS_dl
X	19428629	X_19428629_INS [dm3] X_19534596_INS [dm6]	G	GACCCAGG	3.625e^-4	0.976	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3L	13708708	3L_13708708_SNP [dm3] 3L_13715608_SNP [dm6]	T	C	3.629e^-4	0.976	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16963192	3R_16963192_SNP [dm3] 3R_21137470_SNP [dm6]	G	T	3.631e^-4	0.976	SPLICE_SITE_REGION Ubpy UPSTREAM meigo INTRON Ubpy	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6036815	2L_6036815_SNP [dm3] 2L_6036815_SNP [dm6]	C	G	3.635e^-4	0.976	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6036816	2L_6036816_SNP [dm3] 2L_6036816_SNP [dm6]	G	A	3.635e^-4	0.976	START_GAINED mtm UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10925041	3L_10925041_SNP [dm3] 3L_10931941_SNP [dm6]	C	T	3.641e^-4	0.976	INTERGENIC
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	3.648e^-4	0.976	INTRON Tgi
3L	10925035	3L_10925035_SNP [dm3] 3L_10931935_SNP [dm6]	T	G	3.650e^-4	0.976	INTERGENIC
X	4534228	X_4534228_SNP [dm3] X_4640195_SNP [dm6]	T	C	3.650e^-4	0.976	SYNONYMOUS_CODING CG3081	TF binding site mE1_TFBS_chinmo
3R	18483428	3R_18483428_SNP [dm3] 3R_22657706_SNP [dm6]	G	C	3.651e^-4	0.976	INTRON CG45058
3R	18484200	3R_18484200_SNP [dm3] 3R_22658478_SNP [dm6]	T	G	3.651e^-4	0.976	INTRON CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19309314	3R_19309314_SNP [dm3] 3R_23483592_SNP [dm6]	C	T	3.661e^-4	0.976	UPSTREAM Ir94g DOWNSTREAM Ir94f INTERGENIC
2R	16136117	2R_16136117_SNP [dm3] 2R_20248612_SNP [dm6]	G	A	3.664e^-4	0.976	SYNONYMOUS_CODING CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
2L	2740516	2L_2740516_INS [dm3] 2L_2740516_INS [dm6]	C	AAACCAATGATTTG...	3.672e^-4	0.976	SPLICE_SITE_REGION Hrs UPSTREAM Hrs DOWNSTREAM CG31689 INTRON Hrs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3483667	2L_3483667_SNP [dm3] 2L_3483667_SNP [dm6]	C	A	3.683e^-4	0.976	INTRON CG15414
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	3.686e^-4	0.976	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14444033	3R_14444033_SNP [dm3] 3R_18618311_SNP [dm6]	A	G	3.686e^-4	0.976	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13396948	3L_13396948_SNP [dm3] 3L_13403848_SNP [dm6]	C	T	3.690e^-4	0.976	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18963897	3R_18963897_SNP [dm3] 3R_23138175_SNP [dm6]	G	A	3.694e^-4	0.976	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18296884	2R_18296884_SNP [dm3] 2R_22409379_SNP [dm6]	G	C	3.704e^-4	0.976	UTR_3_PRIME qkr58E-3 DOWNSTREAM qkr58E-3 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6036812	2L_6036812_SNP [dm3] 2L_6036812_SNP [dm6]	T	G	3.704e^-4	0.976	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17175007	2R_17175007_SNP [dm3] 2R_21287502_SNP [dm6]	A	G	3.706e^-4	0.976	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2L	3454755	2L_3454755_SNP [dm3] 2L_3454755_SNP [dm6]	A	G	3.707e^-4	0.976	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
2L	5082347	2L_5082347_SNP [dm3] 2L_5082347_SNP [dm6]	G	C	3.708e^-4	0.976	INTRON pgant5
2L	13712206	2L_13712206_SNP [dm3] 2L_13712206_SNP [dm6]	T	C	3.716e^-4	0.976	INTRON CG31814
3L	13292739	3L_13292739_SNP [dm3] 3L_13299639_SNP [dm6]	T	A	3.723e^-4	0.976	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
2L	20235076	2L_20235076_SNP [dm3] 2L_20235076_SNP [dm6]	T	G	3.729e^-4	0.976	INTERGENIC
X	6866290	X_6866290_SNP [dm3] X_6972257_SNP [dm6]	G	A	3.747e^-4	0.976	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
3L	1078558	3L_1078558_SNP [dm3] 3L_1078558_SNP [dm6]	A	G	3.747e^-4	0.976	INTRON bab1	TF binding site mE1_TFBS_HSA
X	16614927	X_16614927_SNP [dm3] X_16720894_SNP [dm6]	A	G	3.750e^-4	0.976	UPSTREAM CG32572 INTRON CG34325
2L	19866016	2L_19866016_SNP [dm3] 2L_19866016_SNP [dm6]	T	G	3.758e^-4	0.976	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	3.761e^-4	0.976	INTERGENIC
2R	19209616	2R_19209616_SNP [dm3] 2R_23322093_SNP [dm6]	T	C	3.769e^-4	0.976	INTRON CG30416
3L	3907251	3L_3907251_SNP [dm3] 3L_3907251_SNP [dm6]	T	C	3.770e^-4	0.976	SYNONYMOUS_CODING ida DOWNSTREAM mge	TF binding site mE1_TFBS_sens
3R	16950841	3R_16950841_SNP [dm3] 3R_21125119_SNP [dm6]	C	G	3.773e^-4	0.976	INTRON slmb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22373595	3R_22373595_SNP [dm3] 3R_26547873_SNP [dm6]	A	C	3.776e^-4	0.976	INTRON scrib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21491130	3R_21491130_SNP [dm3] 3R_25665408_SNP [dm6]	G	A	3.781e^-4	0.976	UTR_3_PRIME RASSF8 UPSTREAM Lgr3	TF binding site BDTNP1_TFBS_twi
3L	6726749	3L_6726749_SNP [dm3] 3L_6733649_SNP [dm6]	G	A	3.794e^-4	0.976	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	5883104	X_5883104_INS [dm3] X_5989071_INS [dm6]	C	CGCC	3.796e^-4	0.976	UTR_5_PRIME CG5966
2R	6129082	2R_6129082_INS [dm3] 2R_10241577_INS [dm6]	A	AAAAAC	3.799e^-4	0.976	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12569577	3L_12569577_SNP [dm3] 3L_12576477_SNP [dm6]	G	A	3.805e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
X	5472112	X_5472112_SNP [dm3] X_5578079_SNP [dm6]	T	A	3.807e^-4	0.976	INTERGENIC
2L	16867714	2L_16867714_SNP [dm3] 2L_16867714_SNP [dm6]	A	G	3.809e^-4	0.976	INTERGENIC
3L	18857780	3L_18857780_MNP [dm3] 3L_18864680_MNP [dm6]	AAC	TGT	3.814e^-4	0.976	INTRON CG6865	silencer mE1_HDAC_PRE
3R	22010145	3R_22010145_SNP [dm3] 3R_26184423_SNP [dm6]	A	T	3.827e^-4	0.976	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18364444	3L_18364444_SNP [dm3] 3L_18371344_SNP [dm6]	T	A	3.831e^-4	0.976	INTERGENIC
2L	20246910	2L_20246910_SNP [dm3] 2L_20246910_SNP [dm6]	C	T	3.835e^-4	0.976	INTERGENIC
3R	23368078	3R_23368078_SNP [dm3] 3R_27542356_SNP [dm6]	A	G	3.838e^-4	0.976	UPSTREAM Gr98b INTERGENIC	TF binding site mE1_TFBS_sens
3L	14594421	3L_14594421_SNP [dm3] 3L_14601321_SNP [dm6]	C	T	3.839e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	3.843e^-4	0.976	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3L	14574335	3L_14574335_SNP [dm3] 3L_14581235_SNP [dm6]	A	T	3.847e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	6680787	3L_6680787_SNP [dm3] 3L_6687687_SNP [dm6]	G	A	3.857e^-4	0.976	INTERGENIC
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	3.859e^-4	0.976	SYNONYMOUS_CODING SP1173
2L	9995297	2L_9995297_SNP [dm3] 2L_9995297_SNP [dm6]	C	A	3.883e^-4	0.976	UTR_3_PRIME bib DOWNSTREAM CG31875
3R	13591093	3R_13591093_SNP [dm3] 3R_17765371_SNP [dm6]	T	C	3.884e^-4	0.976	INTERGENIC
X	562745	X_562745_DEL [dm3] X_668712_DEL [dm6]	CCAAAAC	C	3.888e^-4	0.976	INTERGENIC
3L	18898550	3L_18898550_SNP [dm3] 3L_18905450_SNP [dm6]	T	A	3.891e^-4	0.976	UTR_5_PRIME CG6841 UPSTREAM CSN1b	TF binding site BDTNP1_TFBS_dl
2L	8177525	2L_8177525_SNP [dm3] 2L_8177525_SNP [dm6]	C	T	3.899e^-4	0.976	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18897424	3L_18897424_SNP [dm3] 3L_18904324_SNP [dm6]	C	T	3.904e^-4	0.976	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2402260	3L_2402260_SNP [dm3] 3L_2402260_SNP [dm6]	C	G	3.914e^-4	0.976	INTRON CG45186	TF binding site mE1_TFBS_cad
2R	3442639	2R_3442639_SNP [dm3] 2R_7555134_SNP [dm6]	G	A	3.931e^-4	0.976	NON_SYNONYMOUS_CODING Corin
2R	19209603	2R_19209603_SNP [dm3] 2R_23322080_SNP [dm6]	A	G	3.942e^-4	0.976	INTRON CG30416
2R	16212317	2R_16212317_SNP [dm3] 2R_20324812_SNP [dm6]	T	G	3.946e^-4	0.976	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
3L	11175095	3L_11175095_SNP [dm3] 3L_11181995_SNP [dm6]	A	G	3.961e^-4	0.976	INTRON GlcAT-P
X	6518595	X_6518595_SNP [dm3] X_6624562_SNP [dm6]	A	C	3.973e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13064976	3R_13064976_SNP [dm3] 3R_17239254_SNP [dm6]	A	T	3.975e^-4	0.976	INTRON beat-IIb
X	6518573	X_6518573_SNP [dm3] X_6624540_SNP [dm6]	A	T	3.976e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5066341	X_5066341_DEL [dm3] X_5172308_DEL [dm6]	TCCCTCT	T	3.997e^-4	0.976	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15999712	X_15999712_DEL [dm3] X_16105679_DEL [dm6]	TT	T	3.999e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6500516	3L_6500516_SNP [dm3] 3L_6507416_SNP [dm6]	G	A	4.003e^-4	0.976	INTRON sfl
3R	20362154	3R_20362154_SNP [dm3] 3R_24536432_SNP [dm6]	G	C	4.003e^-4	0.976	UTR_3_PRIME CG5789 DOWNSTREAM ana1
3R	13785093	3R_13785093_SNP [dm3] 3R_17959371_SNP [dm6]	G	T	4.026e^-4	0.976	INTRON cpo
2L	2787416	2L_2787416_SNP [dm3] 2L_2787416_SNP [dm6]	A	G	4.031e^-4	0.976	INTRON Syt1
2R	16212342	2R_16212342_INS [dm3] 2R_20324837_INS [dm6]	C	CCCC	4.042e^-4	0.976	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
3R	15164315	3R_15164315_SNP [dm3] 3R_19338593_SNP [dm6]	G	C	4.043e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12389456	3L_12389456_SNP [dm3] 3L_12396356_SNP [dm6]	G	A	4.050e^-4	0.976	SYNONYMOUS_CODING Obp69a INTRON CG32104
3R	14831551	3R_14831551_SNP [dm3] 3R_19005829_SNP [dm6]	G	C	4.052e^-4	0.976	INTRON gukh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5472125	X_5472125_SNP [dm3] X_5578092_SNP [dm6]	A	G	4.062e^-4	0.976	INTERGENIC
2R	17921703	2R_17921703_DEL [dm3] 2R_22034198_DEL [dm6]	GG	G	4.064e^-4	0.976	UPSTREAM CG9308 INTRON CG34370
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	4.076e^-4	0.976	INTERGENIC
X	11232488	X_11232488_SNP [dm3] X_11338455_SNP [dm6]	A	C	4.080e^-4	0.976	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
2L	8182580	2L_8182580_SNP [dm3] 2L_8182580_SNP [dm6]	C	T	4.081e^-4	0.976	INTRON Piezo
3R	26494838	3R_26494838_SNP [dm3] 3R_30669116_SNP [dm6]	C	A	4.082e^-4	0.976	INTERGENIC
X	4861892	X_4861892_SNP [dm3] X_4967859_SNP [dm6]	G	A	4.089e^-4	0.976	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14879567	2R_14879567_SNP [dm3] 2R_18992062_SNP [dm6]	A	G	4.114e^-4	0.976	INTRON tn
2L	10500728	2L_10500728_SNP [dm3] 2L_10500728_SNP [dm6]	T	A	4.115e^-4	0.976	INTRON Myo31DF
2L	10207344	2L_10207344_SNP [dm3] 2L_10207344_SNP [dm6]	T	A	4.117e^-4	0.976	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
2L	942447	2L_942447_SNP [dm3] 2L_942447_SNP [dm6]	G	T	4.121e^-4	0.976	INTRON CG4341
3L	12665472	3L_12665472_SNP [dm3] 3L_12672372_SNP [dm6]	G	C	4.123e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	17174968	2R_17174968_SNP [dm3] 2R_21287463_SNP [dm6]	G	A	4.129e^-4	0.976	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	16713161	3R_16713161_SNP [dm3] 3R_20887439_SNP [dm6]	C	A	4.130e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_inv
3L	18654970	3L_18654970_SNP [dm3] 3L_18661870_SNP [dm6]	A	G	4.138e^-4	0.976	UTR_5_PRIME MYPT-75D
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	4.140e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	5505718	2L_5505718_SNP [dm3] 2L_5505718_SNP [dm6]	C	A	4.141e^-4	0.976	INTERGENIC
X	2812654	X_2812654_SNP [dm3] X_2918621_SNP [dm6]	C	T	4.157e^-4	0.976	INTRON kirre
3L	6668923	3L_6668923_SNP [dm3] 3L_6675823_SNP [dm6]	A	C	4.158e^-4	0.976	INTERGENIC
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	4.160e^-4	0.976	INTRON pnt
2R	20630403	2R_20630403_SNP [dm3] 2R_24742880_SNP [dm6]	G	A	4.160e^-4	0.976	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17574521	2R_17574521_SNP [dm3] 2R_21687016_SNP [dm6]	C	G	4.161e^-4	0.976	NON_SYNONYMOUS_CODING Tbp DOWNSTREAM CG10306 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7284355	3L_7284355_SNP [dm3] 3L_7291255_SNP [dm6]	C	T	4.165e^-4	0.976	INTRON unc-13-4A
2L	14572808	2L_14572808_SNP [dm3] 2L_14572808_SNP [dm6]	A	C	4.167e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14491808	2R_14491808_SNP [dm3] 2R_18604303_SNP [dm6]	C	T	4.172e^-4	0.976	INTRON GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5936960	2L_5936960_SNP [dm3] 2L_5936960_SNP [dm6]	C	T	4.184e^-4	0.976	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	4.190e^-4	0.976	INTRON bnl
2L	5505734	2L_5505734_SNP [dm3] 2L_5505734_SNP [dm6]	C	T	4.191e^-4	0.976	INTERGENIC
3R	15652271	3R_15652271_SNP [dm3] 3R_19826549_SNP [dm6]	A	C	4.198e^-4	0.976	INTRON bnl
X	8946266	X_8946266_DEL [dm3] X_9052233_DEL [dm6]	TT	T	4.216e^-4	0.976	INTRON CG42388	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16875221	2R_16875221_SNP [dm3] 2R_20987716_SNP [dm6]	C	G	4.218e^-4	0.976	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19733539	2L_19733539_SNP [dm3] 2L_19733539_SNP [dm6]	A	G	4.220e^-4	0.976	NON_SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
3L	13406148	3L_13406148_SNP [dm3] 3L_13413048_SNP [dm6]	G	A	4.224e^-4	0.976	UTR_5_PRIME flr UPSTREAM CG10222 INTRON flr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
X	17654117	X_17654117_SNP [dm3] X_17760084_SNP [dm6]	T	A	4.230e^-4	0.976	INTERGENIC
X	517235	X_517235_INS [dm3] X_623202_INS [dm6]	A	ACAACG	4.238e^-4	0.976	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
3R	17319643	3R_17319643_SNP [dm3] 3R_21493921_SNP [dm6]	A	C	4.239e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6518628	X_6518628_SNP [dm3] X_6624595_SNP [dm6]	C	T	4.239e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	20343934	3R_20343934_SNP [dm3] 3R_24518212_SNP [dm6]	C	A	4.243e^-4	0.976	UPSTREAM Pp1alpha-96A DOWNSTREAM CG13617 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	4.243e^-4	0.976	INTERGENIC
2L	16174245	2L_16174245_SNP [dm3] 2L_16174245_SNP [dm6]	T	C	4.246e^-4	0.976	INTRON Ca-alpha1D
2R	18327550	2R_18327550_SNP [dm3] 2R_22440045_SNP [dm6]	A	G	4.250e^-4	0.976	INTERGENIC
3L	11654517	3L_11654517_SNP [dm3] 3L_11661417_SNP [dm6]	C	G	4.254e^-4	0.976	INTRON CG32085
3L	3416525	3L_3416525_SNP [dm3] 3L_3416525_SNP [dm6]	A	C	4.258e^-4	0.976	INTRON sty
3R	18680991	3R_18680991_DEL [dm3] 3R_22855269_DEL [dm6]	AA	A	4.264e^-4	0.976	INTERGENIC
3R	18878214	3R_18878214_SNP [dm3] 3R_23052492_SNP [dm6]	A	C	4.293e^-4	0.976	SYNONYMOUS_CODING Gr94a INTRON p53	TF binding site mE1_TFBS_sens
3L	3907722	3L_3907722_SNP [dm3] 3L_3907722_SNP [dm6]	C	G	4.294e^-4	0.976	SYNONYMOUS_CODING ida DOWNSTREAM mge
2L	8334687	2L_8334687_SNP [dm3] 2L_8334687_SNP [dm6]	T	G	4.295e^-4	0.976	INTERGENIC
2L	8335983	2L_8335983_SNP [dm3] 2L_8335983_SNP [dm6]	C	T	4.295e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15210886	3L_15210886_SNP [dm3] 3L_15217786_SNP [dm6]	A	G	4.297e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26429714	3R_26429714_SNP [dm3] 3R_30603992_SNP [dm6]	C	A	4.298e^-4	0.976	UTR_3_PRIME CG31021 UPSTREAM PH4alphaNE3
2L	3857356	2L_3857356_SNP [dm3] 2L_3857356_SNP [dm6]	T	G	4.315e^-4	0.976	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
2L	19990551	2L_19990551_SNP [dm3] 2L_19990551_SNP [dm6]	A	G	4.316e^-4	0.976	INTRON CG43861
X	16928515	X_16928515_SNP [dm3] X_17034482_SNP [dm6]	T	A	4.318e^-4	0.976	INTRON CG45002
X	16928557	X_16928557_SNP [dm3] X_17034524_SNP [dm6]	T	C	4.318e^-4	0.976	INTRON CG45002
3R	18483456	3R_18483456_SNP [dm3] 3R_22657734_SNP [dm6]	A	G	4.326e^-4	0.976	INTRON CG45058
2R	16139234	2R_16139234_INS [dm3] 2R_20251729_INS [dm6]	T	TACCACAT	4.326e^-4	0.976	INTRON CG9864
3L	13404388	3L_13404388_SNP [dm3] 3L_13411288_SNP [dm6]	T	G	4.329e^-4	0.976	UTR_3_PRIME CG10222 DOWNSTREAM CG10222	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25931840	3R_25931840_SNP [dm3] 3R_30106118_SNP [dm6]	G	A	4.332e^-4	0.976	INTRON sima
X	1777384	X_1777384_SNP [dm3] X_1883351_SNP [dm6]	A	G	4.334e^-4	0.976	INTRON trr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	1028623	X_1028623_INS [dm3] X_1134590_INS [dm6]	A	AA	4.338e^-4	0.976	UTR_5_PRIME CG3655	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23178857	3R_23178857_DEL [dm3] 3R_27353135_DEL [dm6]	TCCAC	T	4.340e^-4	0.976	INTRON CG42534
3R	14159885	3R_14159885_SNP [dm3] 3R_18334163_SNP [dm6]	A	G	4.350e^-4	0.976	UTR_3_PRIME CG15803
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	4.354e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	18661359	2R_18661359_SNP [dm3] 2R_22773854_SNP [dm6]	A	G	4.361e^-4	0.976	INTRON CG42260
X	2813208	X_2813208_SNP [dm3] X_2919175_SNP [dm6]	G	A	4.364e^-4	0.976	UPSTREAM CG3588 INTRON kirre
X	569101	X_569101_SNP [dm3] X_675068_SNP [dm6]	C	T	4.379e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14564886	3L_14564886_SNP [dm3] 3L_14571786_SNP [dm6]	C	A	4.383e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	4.385e^-4	0.976	INTERGENIC
3R	25948348	3R_25948348_SNP [dm3] 3R_30122626_SNP [dm6]	A	G	4.394e^-4	0.976	NON_SYNONYMOUS_CODING CG45072 DOWNSTREAM sima	TF binding site mE1_TFBS_bab1
2R	20742838	2R_20742838_SNP [dm3] 2R_24855315_SNP [dm6]	C	A	4.398e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
X	6518558	X_6518558_SNP [dm3] X_6624525_SNP [dm6]	C	T	4.403e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16787533	X_16787533_SNP [dm3] X_16893500_SNP [dm6]	T	C	4.403e^-4	0.976	INTERGENIC
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	4.406e^-4	0.976	INTRON CG42534
3R	22486221	3R_22486221_SNP [dm3] 3R_26660499_SNP [dm6]	T	C	4.406e^-4	0.976	INTRON beat-VII
3R	15638504	3R_15638504_SNP [dm3] 3R_19812782_SNP [dm6]	G	A	4.412e^-4	0.976	INTRON bnl
2L	3557563	2L_3557563_SNP [dm3] 2L_3557563_SNP [dm6]	T	A	4.413e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	8580613	3R_8580613_SNP [dm3] 3R_12754891_SNP [dm6]	C	T	4.418e^-4	0.976	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1334607	3L_1334607_SNP [dm3] 3L_1334607_SNP [dm6]	C	G	4.419e^-4	0.976	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16196942	3R_16196942_SNP [dm3] 3R_20371220_SNP [dm6]	T	A	4.431e^-4	0.976	INTERGENIC
3L	18666509	3L_18666509_SNP [dm3] 3L_18673409_SNP [dm6]	C	T	4.432e^-4	0.976	UPSTREAM Capr DOWNSTREAM GNBP2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14850681	2R_14850681_SNP [dm3] 2R_18963176_SNP [dm6]	A	C	4.437e^-4	0.976	INTERGENIC
2L	4074973	2L_4074973_SNP [dm3] 2L_4074973_SNP [dm6]	T	A	4.443e^-4	0.976	INTRON ed & 1 other
2R	16212400	2R_16212400_SNP [dm3] 2R_20324895_SNP [dm6]	T	C	4.461e^-4	0.976	NON_SYNONYMOUS_CODING CG8920 DOWNSTREAM CG8920 & 1 other	TF binding site mE1_TFBS_cad
2L	1707029	2L_1707029_SNP [dm3] 2L_1707029_SNP [dm6]	A	G	4.463e^-4	0.976	DOWNSTREAM CG17660 & 1 other INTERGENIC
2R	10872237	2R_10872237_SNP [dm3] 2R_14984732_SNP [dm6]	T	C	4.474e^-4	0.976	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
X	13151581	X_13151581_SNP [dm3] X_13257548_SNP [dm6]	G	A	4.476e^-4	0.976	UTR_3_PRIME CG15742 UPSTREAM mew INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
2L	2246227	2L_2246227_SNP [dm3] 2L_2246227_SNP [dm6]	A	G	4.484e^-4	0.976	DOWNSTREAM CG4267 & 1 other EXON CR42859
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	4.485e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	1252442	3L_1252442_SNP [dm3] 3L_1252442_SNP [dm6]	T	G	4.486e^-4	0.976	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 DOWNSTREAM CG9129	TF binding site mE1_TFBS_cad
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	4.501e^-4	0.976	INTERGENIC
X	6518572	X_6518572_SNP [dm3] X_6624539_SNP [dm6]	G	C	4.509e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	4.510e^-4	0.976	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3L	18866417	3L_18866417_SNP [dm3] 3L_18873317_SNP [dm6]	T	C	4.513e^-4	0.976	UPSTREAM Rad9 INTRON Ugt
X	6518593	X_6518593_SNP [dm3] X_6624560_SNP [dm6]	T	C	4.513e^-4	0.976	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17355656	2R_17355656_SNP [dm3] 2R_21468151_SNP [dm6]	C	T	4.524e^-4	0.976	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	4.532e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	10433174	3L_10433174_SNP [dm3] 3L_10440074_SNP [dm6]	A	T	4.532e^-4	0.976	INTERGENIC
3R	16876821	3R_16876821_SNP [dm3] 3R_21051099_SNP [dm6]	G	A	4.537e^-4	0.976	UPSTREAM CG17279 DOWNSTREAM Mvl INTERGENIC
X	4399038	X_4399038_INS [dm3] X_4505005_INS [dm6]	A	AACCA	4.538e^-4	0.976	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3462121	2R_3462121_DEL [dm3] 2R_7574616_DEL [dm6]	AA	A	4.541e^-4	0.976	INTRON Vps13
X	21337184	X_21337184_INS [dm3] X_21466157_INS [dm6]	A	ACA	4.543e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
3L	13394058	3L_13394058_SNP [dm3] 3L_13400958_SNP [dm6]	A	T	4.551e^-4	0.976	UTR_5_PRIME sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16722595	3R_16722595_SNP [dm3] 3R_20896873_SNP [dm6]	A	G	4.565e^-4	0.976	SYNONYMOUS_CODING CG10830	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10252385	3L_10252385_SNP [dm3] 3L_10259285_SNP [dm6]	G	A	4.581e^-4	0.976	INTERGENIC
2R	5023002	2R_5023002_SNP [dm3] 2R_9135497_SNP [dm6]	C	T	4.585e^-4	0.976	UTR_3_PRIME alc DOWNSTREAM Hydr1	TF binding site mE1_TFBS_cad
X	5472095	X_5472095_SNP [dm3] X_5578062_SNP [dm6]	A	G	4.587e^-4	0.976	INTERGENIC
3R	22727016	3R_22727016_SNP [dm3] 3R_26901294_SNP [dm6]	A	G	4.603e^-4	0.976	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	17166883	3L_17166883_SNP [dm3] 3L_17173783_SNP [dm6]	T	A	4.605e^-4	0.976	INTRON Rbp6
3R	8549755	3R_8549755_INS [dm3] 3R_12724033_INS [dm6]	A	AA	4.609e^-4	0.976	INTERGENIC
2R	20764995	2R_20764995_SNP [dm3] 2R_24877472_SNP [dm6]	A	T	4.611e^-4	0.976	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10968193	3L_10968193_SNP [dm3] 3L_10975093_SNP [dm6]	G	T	4.614e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cad
X	8763899	X_8763899_SNP [dm3] X_8869866_SNP [dm6]	C	T	4.626e^-4	0.976	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
2L	6537988	2L_6537988_SNP [dm3] 2L_6537988_SNP [dm6]	G	C	4.627e^-4	0.976	INTRON eya	TF binding site mE1_TFBS_sens
X	15999675	X_15999675_INS [dm3] X_16105642_INS [dm6]	T	TTA	4.628e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	1688291	3L_1688291_DEL [dm3] 3L_1688291_DEL [dm6]	TTCAATAAATACCATCGATG...	T	4.628e^-4	0.976	UPSTREAM CG7991 INTRON CG7991
3L	10984721	3L_10984721_SNP [dm3] 3L_10991621_SNP [dm6]	C	A	4.638e^-4	0.976	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14429468	3R_14429468_SNP [dm3] 3R_18603746_SNP [dm6]	T	A	4.645e^-4	0.976	INTRON qin & 1 other
3L	9037791	3L_9037791_SNP [dm3] 3L_9044691_SNP [dm6]	C	A	4.649e^-4	0.976	NON_SYNONYMOUS_CODING Doc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	4.650e^-4	0.976	INTRON klg	TF binding site mE1_TFBS_chinmo
3L	415404	3L_415404_SNP [dm3] 3L_415404_SNP [dm6]	C	G	4.657e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs
3R	18186935	3R_18186935_SNP [dm3] 3R_22361213_SNP [dm6]	A	T	4.659e^-4	0.976	SYNONYMOUS_CODING PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
3L	15022643	3L_15022643_SNP [dm3] 3L_15029543_SNP [dm6]	G	T	4.669e^-4	0.976	INTRON Sytbeta
3R	24762092	3R_24762092_SNP [dm3] 3R_28936370_SNP [dm6]	A	C	4.673e^-4	0.976	INTRON CG14521
3L	7123327	3L_7123327_SNP [dm3] 3L_7130227_SNP [dm6]	T	C	4.681e^-4	0.976	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	4.693e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	4.695e^-4	0.976	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25771085	3R_25771085_SNP [dm3] 3R_29945363_SNP [dm6]	T	C	4.697e^-4	0.976	SPLICE_SITE_REGION CG15523 INTRON CG15523
2R	17727241	2R_17727241_SNP [dm3] 2R_21839736_SNP [dm6]	T	C	4.700e^-4	0.976	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15849739	3R_15849739_SNP [dm3] 3R_20024017_SNP [dm6]	C	T	4.708e^-4	0.976	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
2R	19445626	2R_19445626_SNP [dm3] 2R_23558103_SNP [dm6]	G	A	4.714e^-4	0.976	NON_SYNONYMOUS_CODING ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16113650	2R_16113650_MNP [dm3] 2R_20226145_MNP [dm6]	CTATAA	GGCGTC	4.722e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16782285	X_16782285_SNP [dm3] X_16888252_SNP [dm6]	C	A	4.725e^-4	0.976	UTR_3_PRIME CG4880 DOWNSTREAM CR43768
2R	14894219	2R_14894219_SNP [dm3] 2R_19006714_SNP [dm6]	T	G	4.726e^-4	0.976	INTRON tn	TF binding site mE1_TFBS_HSA
X	4412920	X_4412920_SNP [dm3] X_4518887_SNP [dm6]	A	G	4.751e^-4	0.976	INTRON CR32773	TF binding site mE1_TFBS_inv
X	8829904	X_8829904_SNP [dm3] X_8935871_SNP [dm6]	T	A	4.758e^-4	0.976	INTRON rdgA
2R	17575013	2R_17575013_SNP [dm3] 2R_21687508_SNP [dm6]	T	C	4.769e^-4	0.976	UTR_5_PRIME Tbp DOWNSTREAM CG30285	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	11321383	3R_11321383_SNP [dm3] 3R_15495661_SNP [dm6]	G	A	4.770e^-4	0.976	DOWNSTREAM CG5213 INTERGENIC
3R	16180083	3R_16180083_SNP [dm3] 3R_20354361_SNP [dm6]	T	C	4.783e^-4	0.976	INTERGENIC
2L	13964133	2L_13964133_SNP [dm3] 2L_13964133_SNP [dm6]	T	C	4.792e^-4	0.976	SYNONYMOUS_CODING NimB1 DOWNSTREAM NimA & 1 other	TF binding site mE1_TFBS_chinmo
3R	15649145	3R_15649145_SNP [dm3] 3R_19823423_SNP [dm6]	C	T	4.794e^-4	0.976	INTRON bnl
X	4493050	X_4493050_SNP [dm3] X_4599017_SNP [dm6]	G	A	4.796e^-4	0.976	INTRON CR32773
2R	15524031	2R_15524031_SNP [dm3] 2R_19636526_SNP [dm6]	G	C	4.807e^-4	0.976	UPSTREAM CG18367 & 1 other DOWNSTREAM CG42753 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13308983	3L_13308983_SNP [dm3] 3L_13315883_SNP [dm6]	T	A	4.815e^-4	0.976	INTERGENIC
2L	721579	2L_721579_SNP [dm3] 2L_721579_SNP [dm6]	C	G	4.827e^-4	0.976	INTERGENIC
2L	17304135	2L_17304135_SNP [dm3] 2L_17304135_SNP [dm6]	T	C	4.829e^-4	0.976	INTERGENIC
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	4.830e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	4.851e^-4	0.976	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10872097	2R_10872097_SNP [dm3] 2R_14984592_SNP [dm6]	G	C	4.861e^-4	0.976	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	4.887e^-4	0.976	INTRON bnl
X	17233511	X_17233511_SNP [dm3] X_17339478_SNP [dm6]	T	G	4.890e^-4	0.976	INTERGENIC
2L	7292050	2L_7292050_SNP [dm3] 2L_7292050_SNP [dm6]	A	G	4.896e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19663848	2R_19663848_SNP [dm3] 2R_23776325_SNP [dm6]	T	G	4.903e^-4	0.976	INTRON CG9850
3R	16196780	3R_16196780_SNP [dm3] 3R_20371058_SNP [dm6]	G	A	4.916e^-4	0.976	INTERGENIC
X	5472149	X_5472149_SNP [dm3] X_5578116_SNP [dm6]	A	T	4.918e^-4	0.976	INTERGENIC
3L	6684864	3L_6684864_SNP [dm3] 3L_6691764_SNP [dm6]	C	A	4.923e^-4	0.976	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11581370	3L_11581370_SNP [dm3] 3L_11588270_SNP [dm6]	A	G	4.932e^-4	0.976	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	19886611	2L_19886611_INS [dm3] 2L_19886611_INS [dm6]	G	GCTTCGG	4.943e^-4	0.976	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	2892703	2L_2892703_SNP [dm3] 2L_2892703_SNP [dm6]	G	C	4.951e^-4	0.976	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8096229	X_8096229_SNP [dm3] X_8202196_SNP [dm6]	G	A	4.954e^-4	0.976	INTRON sdt	TF binding site mE1_TFBS_inv
X	1797588	X_1797588_SNP [dm3] X_1903555_SNP [dm6]	C	T	4.961e^-4	0.976	UPSTREAM CG32801 DOWNSTREAM Edem1 EXON CR43864	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17535050	2R_17535050_SNP [dm3] 2R_21647545_SNP [dm6]	C	G	4.971e^-4	0.976	INTRON CG10082	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	15731365	X_15731365_SNP [dm3] X_15837332_SNP [dm6]	T	C	4.974e^-4	0.976	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
X	14237476	X_14237476_INS [dm3] X_14343443_INS [dm6]	C	CTGTTGTAATTTATAATTTA...	4.975e^-4	0.976	INTRON dpr8
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	4.977e^-4	0.976	INTRON bnl
3R	15850077	3R_15850077_SNP [dm3] 3R_20024355_SNP [dm6]	G	A	4.981e^-4	0.976	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	19489015	2R_19489015_SNP [dm3] 2R_23601492_SNP [dm6]	G	A	4.986e^-4	0.976	UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209 INTRON CG10332 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3779233	3L_3779233_SNP [dm3] 3L_3779233_SNP [dm6]	T	C	5.017e^-4	0.976	INTRON CG32264
2R	17175013	2R_17175013_SNP [dm3] 2R_21287508_SNP [dm6]	C	T	5.026e^-4	0.976	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
3R	11205706	3R_11205706_SNP [dm3] 3R_15379984_SNP [dm6]	T	A	5.032e^-4	0.976	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18635551	3R_18635551_SNP [dm3] 3R_22809829_SNP [dm6]	C	T	5.047e^-4	0.976	INTERGENIC
2R	20742083	2R_20742083_SNP [dm3] 2R_24854560_SNP [dm6]	A	G	5.051e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25771130	3R_25771130_SNP [dm3] 3R_29945408_SNP [dm6]	C	A	5.062e^-4	0.976	SYNONYMOUS_CODING CG15523
3R	25771472	3R_25771472_SNP [dm3] 3R_29945750_SNP [dm6]	G	T	5.062e^-4	0.976	SYNONYMOUS_CODING CG15523
2R	18960098	2R_18960098_SNP [dm3] 2R_23072575_SNP [dm6]	G	T	5.063e^-4	0.976	UPSTREAM tRNA:CR30202 & 1 other DOWNSTREAM l_2_k09913 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18772413	3R_18772413_SNP [dm3] 3R_22946691_SNP [dm6]	C	A	5.071e^-4	0.976	INTRON klg
2R	18936535	2R_18936535_SNP [dm3] 2R_23049012_SNP [dm6]	T	A	5.073e^-4	0.976	DOWNSTREAM twi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8005201	3L_8005201_SNP [dm3] 3L_8012101_SNP [dm6]	C	A	5.085e^-4	0.976	INTRON nmo
3R	18810649	3R_18810649_SNP [dm3] 3R_22984927_SNP [dm6]	T	G	5.092e^-4	0.976	INTRON Nha2
X	5045193	X_5045193_SNP [dm3] X_5151160_SNP [dm6]	C	T	5.098e^-4	0.976	INTRON rg & 1 other
3R	24531636	3R_24531636_SNP [dm3] 3R_28705914_SNP [dm6]	T	C	5.100e^-4	0.976	SPLICE_SITE_REGION htt INTRON htt
3R	24195971	3R_24195971_SNP [dm3] 3R_28370249_SNP [dm6]	A	G	5.117e^-4	0.976	INTERGENIC
3L	4606768	3L_4606768_INS [dm3] 3L_4606768_INS [dm6]	C	CGTC	5.129e^-4	0.976	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	5.131e^-4	0.976	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
3L	2349722	3L_2349722_SNP [dm3] 3L_2349722_SNP [dm6]	T	C	5.131e^-4	0.976	INTERGENIC
3L	17554541	3L_17554541_SNP [dm3] 3L_17561441_SNP [dm6]	T	A	5.134e^-4	0.976	UTR_3_PRIME Eip74EF
2L	13890960	2L_13890960_SNP [dm3] 2L_13890960_SNP [dm6]	C	T	5.136e^-4	0.976	INTRON CenG1A	TF binding site mE1_TFBS_HSA
2L	1645524	2L_1645524_SNP [dm3] 2L_1645524_SNP [dm6]	T	A	5.146e^-4	0.976	INTERGENIC
3R	22010173	3R_22010173_SNP [dm3] 3R_26184451_SNP [dm6]	C	T	5.154e^-4	0.976	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	1642380	2L_1642380_SNP [dm3] 2L_1642380_SNP [dm6]	G	T	5.160e^-4	0.976	INTERGENIC
2R	12275180	2R_12275180_SNP [dm3] 2R_16387675_SNP [dm6]	A	G	5.160e^-4	0.976	INTRON Sema-2b
3L	6689709	3L_6689709_SNP [dm3] 3L_6696609_SNP [dm6]	A	G	5.194e^-4	0.976	INTRON SP1173
X	7909596	X_7909596_SNP [dm3] X_8015563_SNP [dm6]	G	A	5.200e^-4	0.976	INTRON Tbh
X	8968978	X_8968978_SNP [dm3] X_9074945_SNP [dm6]	A	T	5.200e^-4	0.976	INTRON CG44325
2R	19727517	2R_19727517_SNP [dm3] 2R_23839994_SNP [dm6]	T	C	5.202e^-4	0.976	UPSTREAM CR44805 DOWNSTREAM CG5549 EXON snoRNA:Psi18S-176	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19126526	3R_19126526_SNP [dm3] 3R_23300804_SNP [dm6]	A	G	5.204e^-4	0.976	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19072987	3R_19072987_SNP [dm3] 3R_23247265_SNP [dm6]	C	T	5.207e^-4	0.976	INTRON CG4467
3L	18127102	3L_18127102_SNP [dm3] 3L_18134002_SNP [dm6]	C	T	5.215e^-4	0.976	INTERGENIC
3L	22083671	3L_22083671_SNP [dm3] 3L_22090571_SNP [dm6]	A	C	5.216e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19489016	2R_19489016_SNP [dm3] 2R_23601493_SNP [dm6]	G	C	5.226e^-4	0.976	UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209 INTRON CG10332 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14763843	2R_14763843_SNP [dm3] 2R_18876338_SNP [dm6]	T	C	5.240e^-4	0.976	INTERGENIC
2R	3440718	2R_3440718_SNP [dm3] 2R_7553213_SNP [dm6]	G	A	5.243e^-4	0.976	INTRON Corin
3L	16454892	3L_16454892_SNP [dm3] 3L_16461792_SNP [dm6]	T	G	5.245e^-4	0.976	INTRON CG33158
3R	18964007	3R_18964007_SNP [dm3] 3R_23138285_SNP [dm6]	C	T	5.247e^-4	0.976	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2303287	3L_2303287_SNP [dm3] 3L_2303287_SNP [dm6]	G	A	5.247e^-4	0.976	INTERGENIC
X	16501718	X_16501718_SNP [dm3] X_16607685_SNP [dm6]	G	A	5.249e^-4	0.976	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	16501719	X_16501719_SNP [dm3] X_16607686_SNP [dm6]	C	T	5.249e^-4	0.976	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	15658860	3R_15658860_SNP [dm3] 3R_19833138_SNP [dm6]	A	C	5.262e^-4	0.976	INTRON bnl
2L	12264332	2L_12264332_SNP [dm3] 2L_12264332_SNP [dm6]	A	G	5.262e^-4	0.976	INTRON aret
2L	2011588	2L_2011588_SNP [dm3] 2L_2011588_SNP [dm6]	T	C	5.264e^-4	0.976	UPSTREAM CG4238 & 2 others INTRON CG4238
2R	12803752	2R_12803752_SNP [dm3] 2R_16916247_SNP [dm6]	G	T	5.273e^-4	0.976	INTERGENIC
2R	12803755	2R_12803755_SNP [dm3] 2R_16916250_SNP [dm6]	G	A	5.273e^-4	0.976	INTERGENIC
2R	12803759	2R_12803759_DEL [dm3] 2R_16916254_DEL [dm6]	TAT	T	5.273e^-4	0.976	INTERGENIC
2R	12803858	2R_12803858_DEL [dm3] 2R_16916353_DEL [dm6]	ATTTCACAA	A	5.273e^-4	0.976	INTERGENIC
2L	12153587	2L_12153587_SNP [dm3] 2L_12153587_SNP [dm6]	G	A	5.276e^-4	0.976	SYNONYMOUS_CODING CG31760
X	13391000	X_13391000_INS [dm3] X_13496967_INS [dm6]	A	AAAGGGGGA	5.286e^-4	0.976	INTRON Neto
3R	13591085	3R_13591085_SNP [dm3] 3R_17765363_SNP [dm6]	A	G	5.294e^-4	0.976	INTERGENIC
X	18229378	X_18229378_SNP [dm3] X_18335345_SNP [dm6]	G	A	5.300e^-4	0.976	INTRON CG6123
3R	24664774	3R_24664774_SNP [dm3] 3R_28839052_SNP [dm6]	G	C	5.304e^-4	0.976	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	24664777	3R_24664777_SNP [dm3] 3R_28839055_SNP [dm6]	A	G	5.304e^-4	0.976	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	24664794	3R_24664794_SNP [dm3] 3R_28839072_SNP [dm6]	A	G	5.304e^-4	0.976	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3R	19062756	3R_19062756_SNP [dm3] 3R_23237034_SNP [dm6]	A	G	5.306e^-4	0.976	INTRON CG4467
2L	265630	2L_265630_SNP [dm3] 2L_265630_SNP [dm6]	T	C	5.311e^-4	0.976	SYNONYMOUS_CODING CG17075 INTRON CG3645	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	5.311e^-4	0.976	DOWNSTREAM CG14476 INTERGENIC
3L	6500437	3L_6500437_SNP [dm3] 3L_6507337_SNP [dm6]	T	A	5.313e^-4	0.976	INTRON sfl
3L	11353658	3L_11353658_SNP [dm3] 3L_11360558_SNP [dm6]	G	A	5.314e^-4	0.976	INTERGENIC
X	16775014	X_16775014_SNP [dm3] X_16880981_SNP [dm6]	C	T	5.315e^-4	0.976	UPSTREAM CG4872 INTERGENIC
2R	17579083	2R_17579083_SNP [dm3] 2R_21691578_SNP [dm6]	A	T	5.326e^-4	0.976	UPSTREAM Ppcdc & 3 others INTRON CG42496 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13292673	3L_13292673_SNP [dm3] 3L_13299573_SNP [dm6]	G	T	5.330e^-4	0.976	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
2L	9938907	2L_9938907_SNP [dm3] 2L_9938907_SNP [dm6]	G	A	5.334e^-4	0.976	UTR_5_PRIME CG4619 UPSTREAM CG31712 & 1 other DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	15261232	3L_15261232_SNP [dm3] 3L_15268132_SNP [dm6]	T	C	5.338e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	12021565	2R_12021565_SNP [dm3] 2R_16134060_SNP [dm6]	T	A	5.340e^-4	0.976	INTRON spin	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12502350	X_12502350_SNP [dm3] X_12608317_SNP [dm6]	G	A	5.346e^-4	0.976	SYNONYMOUS_CODING Sec16 DOWNSTREAM Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15817267	X_15817267_SNP [dm3] X_15923234_SNP [dm6]	T	C	5.346e^-4	0.976	SYNONYMOUS_CODING CG8916
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	5.350e^-4	0.976	INTRON gish
3L	2273881	3L_2273881_SNP [dm3] 3L_2273881_SNP [dm6]	A	C	5.351e^-4	0.976	DOWNSTREAM tRNA:CR32303 INTERGENIC
3L	1472269	3L_1472269_SNP [dm3] 3L_1472269_SNP [dm6]	T	A	5.353e^-4	0.976	UPSTREAM CG32319 INTRON Ptp61F
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	5.364e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	21337177	X_21337177_SNP [dm3] X_21466150_SNP [dm6]	A	T	5.378e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
3R	7348900	3R_7348900_INS [dm3] 3R_11523178_INS [dm6]	T	TAAGTGTGAGTGT...	5.385e^-4	0.976	INTERGENIC
2R	12275173	2R_12275173_SNP [dm3] 2R_16387668_SNP [dm6]	T	A	5.389e^-4	0.976	INTRON Sema-2b
2R	12275182	2R_12275182_SNP [dm3] 2R_16387677_SNP [dm6]	T	A	5.389e^-4	0.976	INTRON Sema-2b
3L	2299972	3L_2299972_SNP [dm3] 3L_2299972_SNP [dm6]	T	C	5.391e^-4	0.976	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	5.391e^-4	0.976	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9884791	2R_9884791_SNP [dm3] 2R_13997286_SNP [dm6]	T	G	5.402e^-4	0.976	INTRON mam	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6504236	3L_6504236_SNP [dm3] 3L_6511136_SNP [dm6]	G	C	5.420e^-4	0.976	INTRON sfl
2R	11411241	2R_11411241_SNP [dm3] 2R_15523736_SNP [dm6]	C	T	5.432e^-4	0.976	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2740553	2L_2740553_SNP [dm3] 2L_2740553_SNP [dm6]	G	A	5.434e^-4	0.976	SYNONYMOUS_CODING Hrs UPSTREAM Hrs DOWNSTREAM CG31689	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6099937	X_6099937_SNP [dm3] X_6205904_SNP [dm6]	G	T	5.448e^-4	0.976	INTERGENIC
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	5.457e^-4	0.976	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	6517730	X_6517730_SNP [dm3] X_6623697_SNP [dm6]	C	T	5.458e^-4	0.976	INTRON pigs
3R	18257971	3R_18257971_SNP [dm3] 3R_22432249_SNP [dm6]	A	G	5.461e^-4	0.976	INTRON CG13847
3R	27595393	3R_27595393_SNP [dm3] 3R_31769671_SNP [dm6]	G	T	5.464e^-4	0.976	DOWNSTREAM pncr017:3R INTRON CG2135
X	21337179	X_21337179_SNP [dm3] X_21466152_SNP [dm6]	T	G	5.470e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
X	16824691	X_16824691_SNP [dm3] X_16930658_SNP [dm6]	T	C	5.471e^-4	0.976	INTRON CG4928
X	7663534	X_7663534_SNP [dm3] X_7769501_SNP [dm6]	T	C	5.501e^-4	0.976	DOWNSTREAM CG34338 INTERGENIC
X	11925546	X_11925546_SNP [dm3] X_12031513_SNP [dm6]	T	G	5.506e^-4	0.976	UPSTREAM Cyp311a1 INTERGENIC
3R	667649	3R_667649_SNP [dm3] 3R_4841927_SNP [dm6]	C	T	5.512e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	6738690	2L_6738690_SNP [dm3] 2L_6738690_SNP [dm6]	T	C	5.514e^-4	0.976	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16694779	3R_16694779_SNP [dm3] 3R_20869057_SNP [dm6]	A	T	5.519e^-4	0.976	INTERGENIC
2R	3434124	2R_3434124_SNP [dm3] 2R_7546619_SNP [dm6]	A	C	5.523e^-4	0.976	INTRON Corin
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	5.525e^-4	0.976	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	18460799	3R_18460799_SNP [dm3] 3R_22635077_SNP [dm6]	G	A	5.526e^-4	0.976	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8052493	2L_8052493_SNP [dm3] 2L_8052493_SNP [dm6]	T	C	5.528e^-4	0.976	SYNONYMOUS_CODING CG7466
2L	8052496	2L_8052496_SNP [dm3] 2L_8052496_SNP [dm6]	C	T	5.528e^-4	0.976	SYNONYMOUS_CODING CG7466
3R	25322609	3R_25322609_SNP [dm3] 3R_29496887_SNP [dm6]	T	A	5.528e^-4	0.976	INTRON CG2010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	20741124	2R_20741124_SNP [dm3] 2R_24853601_SNP [dm6]	T	C	5.529e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	5.530e^-4	0.976	INTERGENIC
3R	18963961	3R_18963961_SNP [dm3] 3R_23138239_SNP [dm6]	T	C	5.535e^-4	0.976	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16976529	3R_16976529_SNP [dm3] 3R_21150807_SNP [dm6]	C	T	5.537e^-4	0.976	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	15083791	2R_15083791_SNP [dm3] 2R_19196286_SNP [dm6]	T	G	5.558e^-4	0.976	INTRON hppy
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	5.560e^-4	0.976	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	13917740	2R_13917740_SNP [dm3] 2R_18030235_SNP [dm6]	T	C	5.566e^-4	0.976	INTERGENIC
2R	19210527	2R_19210527_SNP [dm3] 2R_23323004_SNP [dm6]	G	T	5.567e^-4	0.976	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
3L	15258041	3L_15258041_SNP [dm3] 3L_15264941_SNP [dm6]	G	A	5.569e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16787532	X_16787532_SNP [dm3] X_16893499_SNP [dm6]	G	T	5.570e^-4	0.976	INTERGENIC
2L	1203424	2L_1203424_SNP [dm3] 2L_1203424_SNP [dm6]	A	G	5.581e^-4	0.976	UPSTREAM CG14342 INTERGENIC
3R	918152	3R_918152_DEL [dm3] 3R_5092430_DEL [dm6]	ACGCT	A	5.581e^-4	0.976	INTERGENIC
2L	7354282	2L_7354282_SNP [dm3] 2L_7354282_SNP [dm6]	A	G	5.582e^-4	0.976	INTERGENIC
2R	12275184	2R_12275184_SNP [dm3] 2R_16387679_SNP [dm6]	G	C	5.589e^-4	0.976	INTRON Sema-2b
2R	17735605	2R_17735605_SNP [dm3] 2R_21848100_SNP [dm6]	C	T	5.594e^-4	0.976	DOWNSTREAM tRNA:CR30406 INTERGENIC
3R	16299534	3R_16299534_SNP [dm3] 3R_20473812_SNP [dm6]	G	A	5.596e^-4	0.976	INTRON Gfrl
2L	2011595	2L_2011595_SNP [dm3] 2L_2011595_SNP [dm6]	C	A	5.598e^-4	0.976	UPSTREAM CG4238 & 2 others INTRON CG4238
2L	12194816	2L_12194816_SNP [dm3] 2L_12194816_SNP [dm6]	G	C	5.609e^-4	0.976	INTRON aret
3R	26701010	3R_26701010_DEL [dm3] 3R_30875288_DEL [dm6]	CACGATCCTC	C	5.611e^-4	0.976	CODON_DELETION CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4225685	2L_4225685_SNP [dm3] 2L_4225685_SNP [dm6]	G	A	5.613e^-4	0.976	SYNONYMOUS_CODING CG3702	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4481726	3L_4481726_SNP [dm3] 3L_4481726_SNP [dm6]	T	A	5.614e^-4	0.976	DOWNSTREAM CG7465 INTERGENIC
X	6866265	X_6866265_SNP [dm3] X_6972232_SNP [dm6]	A	C	5.618e^-4	0.976	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
3R	24138683	3R_24138683_SNP [dm3] 3R_28312961_SNP [dm6]	C	G	5.619e^-4	0.976	INTERGENIC
3R	20343544	3R_20343544_SNP [dm3] 3R_24517822_SNP [dm6]	G	A	5.621e^-4	0.976	NON_SYNONYMOUS_CODING CG13617 UPSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4859493	2L_4859493_SNP [dm3] 2L_4859493_SNP [dm6]	G	A	5.625e^-4	0.976	INTRON pog
3R	18679347	3R_18679347_SNP [dm3] 3R_22853625_SNP [dm6]	G	T	5.627e^-4	0.976	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3L	11581684	3L_11581684_SNP [dm3] 3L_11588584_SNP [dm6]	C	A	5.631e^-4	0.976	UPSTREAM rt INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20974963	X_20974963_SNP [dm3] X_21103936_SNP [dm6]	T	G	5.636e^-4	0.976	SYNONYMOUS_CODING stg1 UTR_5_PRIME CG11566 DOWNSTREAM CG1503
3L	20048931	3L_20048931_SNP [dm3] 3L_20055831_SNP [dm6]	A	T	5.642e^-4	0.976	INTERGENIC
X	21337171	X_21337171_MNP [dm3] X_21466144_MNP [dm6]	TGAAC	GTTCA	5.649e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
2L	9939580	2L_9939580_SNP [dm3] 2L_9939580_SNP [dm6]	A	C	5.662e^-4	0.976	NON_SYNONYMOUS_CODING CG4619 UPSTREAM Apf DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	11976247	2R_11976247_SNP [dm3] 2R_16088742_SNP [dm6]	G	A	5.664e^-4	0.976	SYNONYMOUS_CODING Dg
2R	3440559	2R_3440559_INS [dm3] 2R_7553054_INS [dm6]	C	CGC	5.666e^-4	0.976	INTRON Corin
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	5.667e^-4	0.976	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16139750	2R_16139750_SNP [dm3] 2R_20252245_SNP [dm6]	A	G	5.674e^-4	0.976	INTRON CG9864
3R	16017371	3R_16017371_SNP [dm3] 3R_20191649_SNP [dm6]	A	G	5.676e^-4	0.976	INTERGENIC
3L	13392983	3L_13392983_SNP [dm3] 3L_13399883_SNP [dm6]	G	A	5.684e^-4	0.976	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13392998	3L_13392998_SNP [dm3] 3L_13399898_SNP [dm6]	A	G	5.684e^-4	0.976	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9868219	3R_9868219_SNP [dm3] 3R_14042497_SNP [dm6]	G	A	5.684e^-4	0.976	INTERGENIC
3R	9868233	3R_9868233_DEL [dm3] 3R_14042511_DEL [dm6]	TGTAGGCATATAT...	T	5.684e^-4	0.976	INTERGENIC
2R	12641671	2R_12641671_SNP [dm3] 2R_16754166_SNP [dm6]	T	A	5.685e^-4	0.976	UPSTREAM CG34189 & 1 other INTRON unc-104
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	5.689e^-4	0.976	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	5.689e^-4	0.976	INTRON caps
3L	12507391	3L_12507391_SNP [dm3] 3L_12514291_SNP [dm6]	G	A	5.691e^-4	0.976	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
3L	4457049	3L_4457049_SNP [dm3] 3L_4457049_SNP [dm6]	A	T	5.693e^-4	0.976	DOWNSTREAM CG11345 INTERGENIC
3L	1525341	3L_1525341_SNP [dm3] 3L_1525341_SNP [dm6]	G	A	5.698e^-4	0.976	SYNONYMOUS_CODING CG12090
X	10797035	X_10797035_SNP [dm3] X_10903002_SNP [dm6]	C	G	5.700e^-4	0.976	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	21382085	X_21382085_SNP [dm3] X_21511058_SNP [dm6]	T	C	5.706e^-4	0.976	INTRON CR45082
3L	6137255	3L_6137255_SNP [dm3] 3L_6144155_SNP [dm6]	C	T	5.706e^-4	0.976	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
2R	20766503	2R_20766503_SNP [dm3] 2R_24878980_SNP [dm6]	G	A	5.711e^-4	0.976	SYNONYMOUS_CODING CG44247	TF binding site mE1_TFBS_chinmo
3R	16759759	3R_16759759_SNP [dm3] 3R_20934037_SNP [dm6]	T	C	5.745e^-4	0.976	INTRON CG31191
3L	14331305	3L_14331305_SNP [dm3] 3L_14338205_SNP [dm6]	G	A	5.751e^-4	0.976	INTRON fz	TF binding site BDTNP1_TFBS_dl
X	16159506	X_16159506_SNP [dm3] X_16265473_SNP [dm6]	T	C	5.757e^-4	0.976	SYNONYMOUS_CODING CG12507
3R	18770733	3R_18770733_SNP [dm3] 3R_22945011_SNP [dm6]	C	A	5.758e^-4	0.976	INTRON klg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21337483	X_21337483_SNP [dm3] X_21466456_SNP [dm6]	A	G	5.768e^-4	0.976	DOWNSTREAM CR45507 INTERGENIC
2L	10217089	2L_10217089_SNP [dm3] 2L_10217089_SNP [dm6]	T	G	5.780e^-4	0.976	SYNONYMOUS_CODING Npc1a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24695745	3R_24695745_SNP [dm3] 3R_28870023_SNP [dm6]	G	A	5.783e^-4	0.976	UTR_3_PRIME spg DOWNSTREAM CG33203 & 1 other
3R	8613700	3R_8613700_SNP [dm3] 3R_12787978_SNP [dm6]	G	T	5.792e^-4	0.976	INTERGENIC
3L	18400898	3L_18400898_SNP [dm3] 3L_18407798_SNP [dm6]	C	A	5.795e^-4	0.976	INTERGENIC	regulatory region REDfly_CRMs
X	2813194	X_2813194_SNP [dm3] X_2919161_SNP [dm6]	T	C	5.796e^-4	0.976	UPSTREAM CG3588 INTRON kirre
2L	1958040	2L_1958040_INS [dm3] 2L_1958040_INS [dm6]	C	CC	5.798e^-4	0.976	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_Tarsus_Leg_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results