DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.388e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2101 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	3.626e^-7	0.458	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	9.433e^-7	0.458	INTRON GABA-B-R1
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	9.489e^-7	0.458	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	1.125e^-6	0.458	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	1.251e^-6	0.458	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	1.467e^-6	0.458	INTRON CG3961
2L	15014526	2L_15014526_SNP [dm3] 2L_15014526_SNP [dm6]	A	G	1.983e^-6	0.531	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18554140	2R_18554140_SNP [dm3] 2R_22666635_SNP [dm6]	C	T	2.360e^-6	0.553	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 EXON CR42868
X	21384283	X_21384283_SNP [dm3] X_21513256_SNP [dm6]	A	G	2.926e^-6	0.609	INTRON CR45082
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	4.133e^-6	0.774	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
X	465384	X_465384_SNP [dm3] X_571351_SNP [dm6]	A	G	4.590e^-6	0.782	SPLICE_SITE_REGION Appl SYNONYMOUS_CODING Appl
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	6.272e^-6	0.884	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	8.105e^-6	0.884	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	8.489e^-6	0.884	INTRON Tgi
2L	9821660	2L_9821660_SNP [dm3] 2L_9821660_SNP [dm6]	A	T	9.231e^-6	0.884	INTRON nAChRalpha6
2L	3759193	2L_3759193_SNP [dm3] 2L_3759193_SNP [dm6]	A	G	9.463e^-6	0.884	UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
2R	15868038	2R_15868038_SNP [dm3] 2R_19980533_SNP [dm6]	T	A	1.247e^-5	0.884	SPLICE_SITE_REGION CG8654 UPSTREAM CG8654 INTRON CG8654
X	21384446	X_21384446_SNP [dm3] X_21513419_SNP [dm6]	T	C	1.320e^-5	0.884	INTRON CR45082
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	1.379e^-5	0.884	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11167036	2R_11167036_SNP [dm3] 2R_15279531_SNP [dm6]	G	T	1.408e^-5	0.884	INTRON Trpm
2L	2787394	2L_2787394_SNP [dm3] 2L_2787394_SNP [dm6]	T	G	1.419e^-5	0.884	INTRON Syt1
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	1.448e^-5	0.884	INTERGENIC
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	1.618e^-5	0.884	UPSTREAM Indy INTERGENIC
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	1.667e^-5	0.884	INTRON bnl
X	3786092	X_3786092_INS [dm3] X_3892059_INS [dm6]	G	GG	1.829e^-5	0.884	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	1.945e^-5	0.884	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23835866	3R_23835866_SNP [dm3] 3R_28010144_SNP [dm6]	A	G	2.013e^-5	0.884	INTERGENIC
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	2.017e^-5	0.884	INTRON CG15365
2L	20142248	2L_20142248_DEL [dm3] 2L_20142248_DEL [dm6]	CCTC	C	2.052e^-5	0.884	INTERGENIC
X	14863091	X_14863091_SNP [dm3] X_14969058_SNP [dm6]	C	T	2.057e^-5	0.884	INTRON eag
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	2.119e^-5	0.884	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	2.124e^-5	0.884	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	2.132e^-5	0.884	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	9821706	2L_9821706_SNP [dm3] 2L_9821706_SNP [dm6]	C	G	2.155e^-5	0.884	INTRON nAChRalpha6
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	2.169e^-5	0.884	INTRON CG43174
3R	26429885	3R_26429885_SNP [dm3] 3R_30604163_SNP [dm6]	G	C	2.185e^-5	0.884	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	2.225e^-5	0.884	INTRON bnl
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	2.320e^-5	0.884	INTRON pnt
3R	26303701	3R_26303701_SNP [dm3] 3R_30477979_SNP [dm6]	C	A	2.329e^-5	0.884	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7401467	2R_7401467_SNP [dm3] 2R_11513962_SNP [dm6]	C	T	2.366e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	2.397e^-5	0.884	INTERGENIC
X	11280678	X_11280678_SNP [dm3] X_11386645_SNP [dm6]	T	A	2.428e^-5	0.884	INTRON dlg1
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	2.604e^-5	0.884	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	2.702e^-5	0.884	INTERGENIC
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	2.780e^-5	0.884	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	2.834e^-5	0.884	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	2.910e^-5	0.884	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	10074588	2L_10074588_SNP [dm3] 2L_10074588_SNP [dm6]	T	A	2.924e^-5	0.884	INTRON CG44153
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	2.974e^-5	0.884	INTRON sfl
2L	5725273	2L_5725273_SNP [dm3] 2L_5725273_SNP [dm6]	C	T	3.010e^-5	0.884	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18581558	3R_18581558_SNP [dm3] 3R_22755836_SNP [dm6]	A	T	3.017e^-5	0.884	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	9868219	3R_9868219_SNP [dm3] 3R_14042497_SNP [dm6]	G	A	3.055e^-5	0.884	INTERGENIC
3R	9868233	3R_9868233_DEL [dm3] 3R_14042511_DEL [dm6]	TGTAGGCATATAT...	T	3.055e^-5	0.884	INTERGENIC
3L	7248662	3L_7248662_SNP [dm3] 3L_7255562_SNP [dm6]	A	G	3.107e^-5	0.884	INTRON CG14830
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	3.109e^-5	0.884	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8682482	2L_8682482_SNP [dm3] 2L_8682482_SNP [dm6]	G	A	3.209e^-5	0.884	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
3R	19073296	3R_19073296_SNP [dm3] 3R_23247574_SNP [dm6]	C	G	3.215e^-5	0.884	INTRON CG4467
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	3.291e^-5	0.884	UPSTREAM CG33998 INTRON Hs3st-A
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	3.299e^-5	0.884	INTERGENIC
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	3.405e^-5	0.884	INTERGENIC
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	3.492e^-5	0.884	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7248664	3L_7248664_SNP [dm3] 3L_7255564_SNP [dm6]	A	T	3.496e^-5	0.884	INTRON CG14830
X	21253559	X_21253559_SNP [dm3] X_21382532_SNP [dm6]	T	C	3.554e^-5	0.884	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24613931	3R_24613931_DEL [dm3] 3R_28788209_DEL [dm6]	ATA	A	3.570e^-5	0.884	INTERGENIC
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	3.619e^-5	0.884	INTRON tn
3L	5329126	3L_5329126_SNP [dm3] 3L_5336026_SNP [dm6]	A	C	3.664e^-5	0.884	DOWNSTREAM CR45742 INTERGENIC
X	21253596	X_21253596_SNP [dm3] X_21382569_SNP [dm6]	C	T	3.664e^-5	0.884	SYNONYMOUS_CODING slgA UTR_5_PRIME slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15316445	2R_15316445_SNP [dm3] 2R_19428940_SNP [dm6]	G	T	3.734e^-5	0.884	UTR_3_PRIME CalpA INTRON CalpA
X	14864392	X_14864392_SNP [dm3] X_14970359_SNP [dm6]	A	G	3.741e^-5	0.884	INTRON eag
2L	15560892	2L_15560892_SNP [dm3] 2L_15560892_SNP [dm6]	T	A	3.794e^-5	0.884	INTRON kek3
3R	23254919	3R_23254919_SNP [dm3] 3R_27429197_SNP [dm6]	C	T	3.806e^-5	0.884	INTRON side
3L	6504633	3L_6504633_SNP [dm3] 3L_6511533_SNP [dm6]	T	G	3.823e^-5	0.884	INTRON sfl
3R	16004116	3R_16004116_INS [dm3] 3R_20178394_INS [dm6]	C	CTGGATCCTC	3.846e^-5	0.884	INTERGENIC
X	10804035	X_10804035_INS [dm3] X_10910002_INS [dm6]	T	TTAT	3.894e^-5	0.884	INTRON CG43901
2L	2787416	2L_2787416_SNP [dm3] 2L_2787416_SNP [dm6]	A	G	3.915e^-5	0.884	INTRON Syt1
X	11420770	X_11420770_SNP [dm3] X_11526737_SNP [dm6]	A	T	3.950e^-5	0.884	INTRON Drak	TF binding site BDTNP1_TFBS_dl
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	3.994e^-5	0.884	INTERGENIC
3L	10443883	3L_10443883_SNP [dm3] 3L_10450783_SNP [dm6]	A	G	4.068e^-5	0.884	INTERGENIC
2L	10351280	2L_10351280_SNP [dm3] 2L_10351280_SNP [dm6]	T	C	4.083e^-5	0.884	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	4.100e^-5	0.884	INTERGENIC
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	4.112e^-5	0.884	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	4.112e^-5	0.884	INTRON trol
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	4.173e^-5	0.884	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15868057	2R_15868057_SNP [dm3] 2R_19980552_SNP [dm6]	G	A	4.202e^-5	0.884	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
X	21373374	X_21373374_SNP [dm3] X_21502347_SNP [dm6]	A	G	4.211e^-5	0.884	INTRON CR45082
3L	6503375	3L_6503375_SNP [dm3] 3L_6510275_SNP [dm6]	G	T	4.231e^-5	0.884	INTRON sfl
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	4.259e^-5	0.884	INTERGENIC
3L	6504635	3L_6504635_SNP [dm3] 3L_6511535_SNP [dm6]	C	G	4.369e^-5	0.884	INTRON sfl
3R	14444188	3R_14444188_INS [dm3] 3R_18618466_INS [dm6]	A	ATCG	4.369e^-5	0.884	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	755744	2L_755744_SNP [dm3] 2L_755744_SNP [dm6]	G	T	4.450e^-5	0.884	UTR_3_PRIME GABA-B-R3 INTRON GABA-B-R3
3R	15652088	3R_15652088_SNP [dm3] 3R_19826366_SNP [dm6]	T	C	4.491e^-5	0.884	INTRON bnl
X	10804050	X_10804050_SNP [dm3] X_10910017_SNP [dm6]	A	C	4.517e^-5	0.884	INTRON CG43901
3R	9298627	3R_9298627_SNP [dm3] 3R_13472905_SNP [dm6]	T	G	4.629e^-5	0.884	INTERGENIC
2L	5623543	2L_5623543_SNP [dm3] 2L_5623543_SNP [dm6]	A	G	4.632e^-5	0.884	SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4417105	2L_4417105_SNP [dm3] 2L_4417105_SNP [dm6]	T	C	4.686e^-5	0.884	INTRON CG15431	TF binding site mE1_TFBS_chinmo
2L	14981225	2L_14981225_SNP [dm3] 2L_14981225_SNP [dm6]	A	G	4.836e^-5	0.884	INTRON mol
2L	20174570	2L_20174570_DEL [dm3] 2L_20174570_DEL [dm6]	TA	T	4.854e^-5	0.884	INTERGENIC	transposable element FlyBase
X	21253568	X_21253568_SNP [dm3] X_21382541_SNP [dm6]	C	G	5.079e^-5	0.884	SPLICE_SITE_REGION slgA INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	5.097e^-5	0.884	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11553907	3R_11553907_SNP [dm3] 3R_15728185_SNP [dm6]	A	G	5.173e^-5	0.884	INTERGENIC
X	6866290	X_6866290_SNP [dm3] X_6972257_SNP [dm6]	G	A	5.206e^-5	0.884	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
2L	5725469	2L_5725469_SNP [dm3] 2L_5725469_SNP [dm6]	G	A	5.211e^-5	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17964919	2R_17964919_SNP [dm3] 2R_22077414_SNP [dm6]	G	T	5.385e^-5	0.884	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	5.409e^-5	0.884	INTERGENIC
X	14034223	X_14034223_SNP [dm3] X_14140190_SNP [dm6]	T	C	5.479e^-5	0.884	INTERGENIC
2L	1668078	2L_1668078_SNP [dm3] 2L_1668078_SNP [dm6]	C	A	5.509e^-5	0.884	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2R	13447728	2R_13447728_SNP [dm3] 2R_17560223_SNP [dm6]	T	C	5.526e^-5	0.884	INTRON Klp54D
3R	26494801	3R_26494801_SNP [dm3] 3R_30669079_SNP [dm6]	T	C	5.552e^-5	0.884	INTERGENIC
3L	6503400	3L_6503400_SNP [dm3] 3L_6510300_SNP [dm6]	G	C	5.603e^-5	0.884	INTRON sfl
3R	19073290	3R_19073290_SNP [dm3] 3R_23247568_SNP [dm6]	A	T	5.701e^-5	0.884	INTRON CG4467
3L	2576180	3L_2576180_SNP [dm3] 3L_2576180_SNP [dm6]	A	G	5.855e^-5	0.884	INTRON msn
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	5.893e^-5	0.884	INTRON pum
3L	2571144	3L_2571144_SNP [dm3] 3L_2571144_SNP [dm6]	A	C	5.933e^-5	0.884	INTRON msn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11166875	2R_11166875_SNP [dm3] 2R_15279370_SNP [dm6]	C	T	6.152e^-5	0.884	SYNONYMOUS_CODING Trpm
2L	8116809	2L_8116809_SNP [dm3] 2L_8116809_SNP [dm6]	G	A	6.178e^-5	0.884	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23235845	3R_23235845_SNP [dm3] 3R_27410123_SNP [dm6]	A	T	6.178e^-5	0.884	INTRON side
X	19727082	X_19727082_SNP [dm3] X_19833049_SNP [dm6]	G	A	6.310e^-5	0.884	UTR_3_PRIME pico
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	6.321e^-5	0.884	INTRON CG43444	TF binding site mE1_TFBS_inv
X	20417544	X_20417544_SNP [dm3] X_20546517_SNP [dm6]	C	T	6.333e^-5	0.884	INTRON RunxB
X	4478035	X_4478035_SNP [dm3] X_4584002_SNP [dm6]	T	A	6.480e^-5	0.884	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17934578	3L_17934578_SNP [dm3] 3L_17941478_SNP [dm6]	C	T	6.496e^-5	0.884	INTRON CG43174	TF binding site mE1_TFBS_HSA
2L	5725497	2L_5725497_SNP [dm3] 2L_5725497_SNP [dm6]	C	A	6.542e^-5	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	6.560e^-5	0.884	INTRON CngA	TF binding site mE1_TFBS_inv
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	6.617e^-5	0.884	DOWNSTREAM CG13500 INTERGENIC
3R	15659156	3R_15659156_SNP [dm3] 3R_19833434_SNP [dm6]	C	T	6.647e^-5	0.884	INTRON bnl
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	6.687e^-5	0.884	UTR_5_PRIME CG6841 UPSTREAM CSN1b
2R	16692468	2R_16692468_SNP [dm3] 2R_20804963_SNP [dm6]	C	A	6.747e^-5	0.884	INTERGENIC
2L	5725480	2L_5725480_SNP [dm3] 2L_5725480_SNP [dm6]	A	T	6.757e^-5	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20388289	2L_20388289_SNP [dm3] 2L_20388289_SNP [dm6]	T	C	6.765e^-5	0.884	INTRON CG10947
X	3857674	X_3857674_SNP [dm3] X_3963641_SNP [dm6]	A	G	6.788e^-5	0.884	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12403464	X_12403464_SNP [dm3] X_12509431_SNP [dm6]	A	G	6.825e^-5	0.884	INTRON CG2556
3R	27595393	3R_27595393_SNP [dm3] 3R_31769671_SNP [dm6]	G	T	7.025e^-5	0.884	DOWNSTREAM pncr017:3R INTRON CG2135
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	7.088e^-5	0.884	INTERGENIC
2L	9370455	2L_9370455_SNP [dm3] 2L_9370455_SNP [dm6]	T	G	7.121e^-5	0.884	UTR_3_PRIME Shawl
3L	6501408	3L_6501408_SNP [dm3] 3L_6508308_SNP [dm6]	G	A	7.460e^-5	0.884	INTRON sfl
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	7.516e^-5	0.884	INTRON bnl
2R	12177936	2R_12177936_SNP [dm3] 2R_16290431_SNP [dm6]	C	T	7.525e^-5	0.884	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3758927	2L_3758927_SNP [dm3] 2L_3758927_SNP [dm6]	C	A	7.538e^-5	0.884	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	3758950	2L_3758950_SNP [dm3] 2L_3758950_SNP [dm6]	G	T	7.548e^-5	0.884	INTRON CG43707
3L	7280440	3L_7280440_SNP [dm3] 3L_7287340_SNP [dm6]	G	A	7.556e^-5	0.884	INTRON unc-13-4A
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	7.744e^-5	0.884	INTERGENIC
3R	24023297	3R_24023297_SNP [dm3] 3R_28197575_SNP [dm6]	T	C	7.829e^-5	0.884	INTRON CG34354	TF binding site mE1_TFBS_inv
3L	13400561	3L_13400561_SNP [dm3] 3L_13407461_SNP [dm6]	A	T	7.870e^-5	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	7.919e^-5	0.884	INTERGENIC
2R	14440871	2R_14440871_DEL [dm3] 2R_18553366_DEL [dm6]	GG	G	7.926e^-5	0.884	DOWNSTREAM GEFmeso INTERGENIC
X	13921606	X_13921606_SNP [dm3] X_14027573_SNP [dm6]	C	T	7.959e^-5	0.884	INTERGENIC
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	8.022e^-5	0.884	INTRON sfl
2L	15490243	2L_15490243_SNP [dm3] 2L_15490243_SNP [dm6]	C	A	8.035e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18269343	3L_18269343_SNP [dm3] 3L_18276243_SNP [dm6]	C	A	8.131e^-5	0.884	INTERGENIC
3R	8613700	3R_8613700_SNP [dm3] 3R_12787978_SNP [dm6]	G	T	8.246e^-5	0.884	INTERGENIC
2L	8683438	2L_8683438_SNP [dm3] 2L_8683438_SNP [dm6]	G	A	8.304e^-5	0.884	UPSTREAM tRNA:CR31890 DOWNSTREAM tRNA:CR31888 INTRON CG9289
2L	10500728	2L_10500728_SNP [dm3] 2L_10500728_SNP [dm6]	T	A	8.364e^-5	0.884	INTRON Myo31DF
3R	23469776	3R_23469776_SNP [dm3] 3R_27644054_SNP [dm6]	G	T	8.400e^-5	0.884	INTRON tau
3R	16661202	3R_16661202_SNP [dm3] 3R_20835480_SNP [dm6]	T	C	8.448e^-5	0.884	INTRON Synd
X	21363045	X_21363045_SNP [dm3] X_21492018_SNP [dm6]	G	A	8.512e^-5	0.884	INTERGENIC
3R	17319643	3R_17319643_SNP [dm3] 3R_21493921_SNP [dm6]	A	C	8.656e^-5	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20413744	3R_20413744_SNP [dm3] 3R_24588022_SNP [dm6]	A	G	8.701e^-5	0.884	INTRON mld	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12177933	2R_12177933_SNP [dm3] 2R_16290428_SNP [dm6]	T	C	8.702e^-5	0.884	SYNONYMOUS_CODING JhI-26 EXON CR43730	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5725494	2L_5725494_SNP [dm3] 2L_5725494_SNP [dm6]	C	T	8.715e^-5	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	8.784e^-5	0.884	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	8.879e^-5	0.884	INTRON klg	TF binding site mE1_TFBS_chinmo
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	8.891e^-5	0.884	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8119086	2L_8119086_SNP [dm3] 2L_8119086_SNP [dm6]	A	T	8.938e^-5	0.884	INTRON mon2
2L	5725321	2L_5725321_DEL [dm3] 2L_5725321_DEL [dm6]	TTAT	T	8.977e^-5	0.884	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	9.103e^-5	0.884	INTERGENIC
2L	1606423	2L_1606423_SNP [dm3] 2L_1606423_SNP [dm6]	C	T	9.119e^-5	0.884	SYNONYMOUS_CODING haf INTRON CG31935
2R	17264064	2R_17264064_SNP [dm3] 2R_21376559_SNP [dm6]	G	C	9.162e^-5	0.884	INTRON cv-2
X	11925546	X_11925546_SNP [dm3] X_12031513_SNP [dm6]	T	G	9.179e^-5	0.884	UPSTREAM Cyp311a1 INTERGENIC
2L	12264332	2L_12264332_SNP [dm3] 2L_12264332_SNP [dm6]	A	G	9.194e^-5	0.884	INTRON aret
2R	17964922	2R_17964922_SNP [dm3] 2R_22077417_SNP [dm6]	C	T	9.196e^-5	0.884	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	9.268e^-5	0.884	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	14996645	2L_14996645_SNP [dm3] 2L_14996645_SNP [dm6]	G	A	9.279e^-5	0.884	INTRON mol
X	4083839	X_4083839_SNP [dm3] X_4189806_SNP [dm6]	C	T	9.294e^-5	0.884	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14763843	2R_14763843_SNP [dm3] 2R_18876338_SNP [dm6]	T	C	9.366e^-5	0.884	INTERGENIC
3R	18960931	3R_18960931_SNP [dm3] 3R_23135209_SNP [dm6]	G	A	9.392e^-5	0.884	INTRON hh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
4	262364	4_262364_SNP [dm3] 4_241738_SNP [dm6]	G	A	9.415e^-5	0.884	DOWNSTREAM CG1674 INTRON CG1674
X	6866265	X_6866265_SNP [dm3] X_6972232_SNP [dm6]	A	C	9.448e^-5	0.884	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
2L	20222456	2L_20222456_INS [dm3] 2L_20222456_INS [dm6]	A	AGA	9.524e^-5	0.884	INTERGENIC	transposable element FlyBase
X	4734567	X_4734567_SNP [dm3] X_4840534_SNP [dm6]	G	A	9.634e^-5	0.884	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8330507	2L_8330507_SNP [dm3] 2L_8330507_SNP [dm6]	T	C	9.665e^-5	0.884	INTRON CG14275
3R	22986996	3R_22986996_SNP [dm3] 3R_27161274_SNP [dm6]	A	C	9.732e^-5	0.884	UTR_5_PRIME CG5909
3L	14480829	3L_14480829_SNP [dm3] 3L_14487729_SNP [dm6]	T	A	9.737e^-5	0.884	INTRON bbg
2R	16872759	2R_16872759_SNP [dm3] 2R_20985254_SNP [dm6]	T	C	9.775e^-5	0.884	INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8118985	2L_8118985_SNP [dm3] 2L_8118985_SNP [dm6]	G	C	9.776e^-5	0.884	SYNONYMOUS_CODING mon2
X	3857687	X_3857687_SNP [dm3] X_3963654_SNP [dm6]	G	T	9.873e^-5	0.884	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26713310	3R_26713310_SNP [dm3] 3R_30887588_SNP [dm6]	A	C	9.875e^-5	0.884	INTRON Sap-r
3L	9200194	3L_9200194_SNP [dm3] 3L_9207094_SNP [dm6]	G	T	9.964e^-5	0.884	UPSTREAM Slc45-1 INTRON Slc45-1
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	1.003e^-4	0.884	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11037099	3L_11037099_SNP [dm3] 3L_11043999_SNP [dm6]	A	T	1.006e^-4	0.884	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
3R	14889151	3R_14889151_SNP [dm3] 3R_19063429_SNP [dm6]	T	A	1.010e^-4	0.884	INTRON cdi
2L	13668618	2L_13668618_SNP [dm3] 2L_13668618_SNP [dm6]	T	G	1.012e^-4	0.884	INTRON CG18507
2L	18390516	2L_18390516_DEL [dm3] 2L_18390516_DEL [dm6]	TT	T	1.015e^-4	0.884	UTR_3_PRIME Fas3 INTRON Fas3
2L	5725162	2L_5725162_SNP [dm3] 2L_5725162_SNP [dm6]	G	C	1.015e^-4	0.884	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725168	2L_5725168_SNP [dm3] 2L_5725168_SNP [dm6]	T	C	1.015e^-4	0.884	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725207	2L_5725207_SNP [dm3] 2L_5725207_SNP [dm6]	A	G	1.015e^-4	0.884	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725239	2L_5725239_INS [dm3] 2L_5725239_INS [dm6]	T	TTAT	1.015e^-4	0.884	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725304	2L_5725304_DEL [dm3] 2L_5725304_DEL [dm6]	ATAACA	A	1.015e^-4	0.884	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19171338	2R_19171338_SNP [dm3] 2R_23283815_SNP [dm6]	T	G	1.022e^-4	0.884	SYNONYMOUS_CODING CG3124 UPSTREAM CG13541	TF binding site mE1_TFBS_chinmo
2L	10452573	2L_10452573_SNP [dm3] 2L_10452573_SNP [dm6]	C	A	1.025e^-4	0.884	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	1.027e^-4	0.884	INTRON jvl
3R	15032559	3R_15032559_SNP [dm3] 3R_19206837_SNP [dm6]	G	A	1.037e^-4	0.884	INTERGENIC
2R	16724027	2R_16724027_SNP [dm3] 2R_20836522_SNP [dm6]	C	T	1.038e^-4	0.884	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4417109	2L_4417109_SNP [dm3] 2L_4417109_SNP [dm6]	T	C	1.052e^-4	0.884	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15292826	2R_15292826_SNP [dm3] 2R_19405321_SNP [dm6]	T	G	1.056e^-4	0.884	SYNONYMOUS_CODING hts INTRON hts
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	1.056e^-4	0.884	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3742884	2L_3742884_SNP [dm3] 2L_3742884_SNP [dm6]	T	C	1.058e^-4	0.884	INTRON CG10019
2R	10941829	2R_10941829_SNP [dm3] 2R_15054324_SNP [dm6]	C	T	1.058e^-4	0.884	INTERGENIC
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	1.062e^-4	0.884	UPSTREAM PH4alphaNE3 INTRON CG31021
2L	5725594	2L_5725594_SNP [dm3] 2L_5725594_SNP [dm6]	G	A	1.064e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10569135	2R_10569135_SNP [dm3] 2R_14681630_SNP [dm6]	A	C	1.074e^-4	0.884	INTRON mspo
3R	10961237	3R_10961237_SNP [dm3] 3R_15135515_SNP [dm6]	C	A	1.078e^-4	0.884	SYNONYMOUS_CODING CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	10351188	2L_10351188_DEL [dm3] 2L_10351188_DEL [dm6]	TATGCCAT	T	1.090e^-4	0.884	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	15650407	3R_15650407_SNP [dm3] 3R_19824685_SNP [dm6]	C	A	1.102e^-4	0.884	INTRON bnl
3R	11554090	3R_11554090_SNP [dm3] 3R_15728368_SNP [dm6]	T	C	1.104e^-4	0.884	INTERGENIC
3R	14889161	3R_14889161_SNP [dm3] 3R_19063439_SNP [dm6]	G	A	1.113e^-4	0.884	INTRON cdi
3R	8573242	3R_8573242_SNP [dm3] 3R_12747520_SNP [dm6]	T	G	1.116e^-4	0.884	SYNONYMOUS_CODING beat-Vc
X	6156833	X_6156833_SNP [dm3] X_6262800_SNP [dm6]	C	T	1.121e^-4	0.884	DOWNSTREAM CG3781 INTRON schlank
3L	8649941	3L_8649941_SNP [dm3] 3L_8656841_SNP [dm6]	A	G	1.121e^-4	0.884	INTERGENIC
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	1.122e^-4	0.884	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10569124	2R_10569124_SNP [dm3] 2R_14681619_SNP [dm6]	G	T	1.122e^-4	0.884	INTRON mspo
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	1.127e^-4	0.884	INTRON CG11537
3L	15683073	3L_15683073_SNP [dm3] 3L_15689973_SNP [dm6]	C	T	1.131e^-4	0.884	INTRON CG34451	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	4487248	3L_4487248_SNP [dm3] 3L_4487248_SNP [dm6]	A	G	1.132e^-4	0.884	SYNONYMOUS_CODING CG13722
3L	14480825	3L_14480825_SNP [dm3] 3L_14487725_SNP [dm6]	G	A	1.136e^-4	0.884	INTRON bbg
2L	5725455	2L_5725455_SNP [dm3] 2L_5725455_SNP [dm6]	T	G	1.138e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5725457	2L_5725457_SNP [dm3] 2L_5725457_SNP [dm6]	A	C	1.138e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20416648	X_20416648_SNP [dm3] X_20545621_SNP [dm6]	T	G	1.139e^-4	0.884	INTRON RunxB	TF binding site mE1_TFBS_sbb
2L	9821641	2L_9821641_SNP [dm3] 2L_9821641_SNP [dm6]	T	G	1.141e^-4	0.884	INTRON nAChRalpha6
X	21942817	X_21942817_SNP [dm3] X_22540981_SNP [dm6]	C	A	1.144e^-4	0.884	SYNONYMOUS_CODING CG17600 UPSTREAM CG17598	TF binding site BDTNP1_TFBS_dl
3R	22299796	3R_22299796_SNP [dm3] 3R_26474074_SNP [dm6]	G	A	1.148e^-4	0.884	SYNONYMOUS_CODING plum
2R	16496552	2R_16496552_SNP [dm3] 2R_20609047_SNP [dm6]	T	C	1.149e^-4	0.884	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15166366	2L_15166366_SNP [dm3] 2L_15166366_SNP [dm6]	A	G	1.152e^-4	0.884	SYNONYMOUS_CODING CG4168
2L	8493138	2L_8493138_SNP [dm3] 2L_8493138_SNP [dm6]	C	T	1.157e^-4	0.884	INTRON Dh31
2R	10569127	2R_10569127_SNP [dm3] 2R_14681622_SNP [dm6]	T	A	1.161e^-4	0.884	INTRON mspo
2R	8944027	2R_8944027_SNP [dm3] 2R_13056522_SNP [dm6]	T	C	1.166e^-4	0.884	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
X	21382167	X_21382167_SNP [dm3] X_21511140_SNP [dm6]	G	A	1.166e^-4	0.884	INTRON CR45082
3R	17749844	3R_17749844_DEL [dm3] 3R_21924122_DEL [dm6]	TT	T	1.168e^-4	0.884	INTERGENIC
3R	26494999	3R_26494999_SNP [dm3] 3R_30669277_SNP [dm6]	G	T	1.174e^-4	0.884	INTERGENIC
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	1.200e^-4	0.884	INTRON fz
3R	14444033	3R_14444033_SNP [dm3] 3R_18618311_SNP [dm6]	A	G	1.201e^-4	0.884	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14064073	3L_14064073_SNP [dm3] 3L_14070973_SNP [dm6]	A	C	1.205e^-4	0.884	UTR_3_PRIME CG32138 UPSTREAM Pex1 DOWNSTREAM CG32138
X	7906589	X_7906589_DEL [dm3] X_8012556_DEL [dm6]	TGT	T	1.209e^-4	0.884	INTRON Tbh
3L	6512184	3L_6512184_DEL [dm3] 3L_6519084_DEL [dm6]	AA	A	1.227e^-4	0.884	INTRON sfl
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	1.229e^-4	0.884	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12245105	X_12245105_SNP [dm3] X_12351072_SNP [dm6]	G	T	1.231e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26494838	3R_26494838_SNP [dm3] 3R_30669116_SNP [dm6]	C	A	1.233e^-4	0.884	INTERGENIC
2L	1644348	2L_1644348_INS [dm3] 2L_1644348_INS [dm6]	T	TT	1.236e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	11654517	3L_11654517_SNP [dm3] 3L_11661417_SNP [dm6]	C	G	1.241e^-4	0.884	INTRON CG32085
2R	17661690	2R_17661690_SNP [dm3] 2R_21774185_SNP [dm6]	T	C	1.243e^-4	0.884	INTRON CG4021
2R	9509821	2R_9509821_SNP [dm3] 2R_13622316_SNP [dm6]	G	A	1.256e^-4	0.884	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9509828	2R_9509828_SNP [dm3] 2R_13622323_SNP [dm6]	A	T	1.256e^-4	0.884	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	10569132	2R_10569132_SNP [dm3] 2R_14681627_SNP [dm6]	G	A	1.257e^-4	0.884	INTRON mspo
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	1.258e^-4	0.884	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
X	16616973	X_16616973_SNP [dm3] X_16722940_SNP [dm6]	C	A	1.259e^-4	0.884	INTRON CG32572	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	1.260e^-4	0.884	INTRON bnl
2L	5725558	2L_5725558_SNP [dm3] 2L_5725558_SNP [dm6]	T	A	1.262e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2273430	3L_2273430_SNP [dm3] 3L_2273430_SNP [dm6]	T	A	1.262e^-4	0.884	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
X	9235897	X_9235897_SNP [dm3] X_9341864_SNP [dm6]	G	T	1.264e^-4	0.884	INTRON CG34449
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	1.266e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12056528	3L_12056528_SNP [dm3] 3L_12063428_SNP [dm6]	T	C	1.274e^-4	0.884	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15235960	2R_15235960_SNP [dm3] 2R_19348455_SNP [dm6]	A	G	1.274e^-4	0.884	INTRON Rgk1
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	1.284e^-4	0.884	INTRON Octbeta2R
2R	10368004	2R_10368004_SNP [dm3] 2R_14480499_SNP [dm6]	A	C	1.293e^-4	0.884	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
4	262383	4_262383_SNP [dm3] 4_241757_SNP [dm6]	C	T	1.297e^-4	0.884	DOWNSTREAM CG1674 INTRON CG1674
2L	2749954	2L_2749954_SNP [dm3] 2L_2749954_SNP [dm6]	G	T	1.307e^-4	0.884	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11925550	X_11925550_SNP [dm3] X_12031517_SNP [dm6]	A	T	1.318e^-4	0.884	UPSTREAM Cyp311a1 INTERGENIC
X	14348501	X_14348501_SNP [dm3] X_14454468_SNP [dm6]	G	A	1.319e^-4	0.884	INTRON dpr8
3L	16555013	3L_16555013_SNP [dm3] 3L_16561913_SNP [dm6]	G	A	1.321e^-4	0.884	INTERGENIC
3L	13777370	3L_13777370_SNP [dm3] 3L_13784270_SNP [dm6]	A	G	1.324e^-4	0.884	INTRON bru-3
3R	21738131	3R_21738131_SNP [dm3] 3R_25912409_SNP [dm6]	C	T	1.328e^-4	0.884	SYNONYMOUS_CODING CG42235 INTRON CG42235
2L	973383	2L_973383_DEL [dm3] 2L_973383_DEL [dm6]	CCAGGACCCGAGCAC...	C	1.328e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15491377	2R_15491377_SNP [dm3] 2R_19603872_SNP [dm6]	G	A	1.351e^-4	0.884	DOWNSTREAM CR44474 INTRON sm EXON CR44473
X	5884477	X_5884477_SNP [dm3] X_5990444_SNP [dm6]	C	T	1.355e^-4	0.884	UTR_5_PRIME CG5966 INTRON CG5966
X	3855061	X_3855061_SNP [dm3] X_3961028_SNP [dm6]	G	T	1.358e^-4	0.884	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_sens
3R	19139894	3R_19139894_SNP [dm3] 3R_23314172_SNP [dm6]	C	T	1.369e^-4	0.884	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26429714	3R_26429714_SNP [dm3] 3R_30603992_SNP [dm6]	C	A	1.373e^-4	0.884	UTR_3_PRIME CG31021 UPSTREAM PH4alphaNE3
3L	4487269	3L_4487269_SNP [dm3] 3L_4487269_SNP [dm6]	T	C	1.376e^-4	0.884	SYNONYMOUS_CODING CG13722
2L	5725459	2L_5725459_SNP [dm3] 2L_5725459_SNP [dm6]	A	T	1.379e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5725460	2L_5725460_SNP [dm3] 2L_5725460_SNP [dm6]	A	C	1.379e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14981924	2L_14981924_SNP [dm3] 2L_14981924_SNP [dm6]	T	A	1.382e^-4	0.884	INTRON mol
3L	13778161	3L_13778161_SNP [dm3] 3L_13785061_SNP [dm6]	A	C	1.383e^-4	0.884	INTRON bru-3
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	1.383e^-4	0.884	DOWNSTREAM CG34338 INTERGENIC
2R	19489015	2R_19489015_SNP [dm3] 2R_23601492_SNP [dm6]	G	A	1.392e^-4	0.884	UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209 INTRON CG10332 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	1.396e^-4	0.884	INTERGENIC
2R	14879567	2R_14879567_SNP [dm3] 2R_18992062_SNP [dm6]	A	G	1.408e^-4	0.884	INTRON tn
2L	18645080	2L_18645080_SNP [dm3] 2L_18645080_SNP [dm6]	C	G	1.409e^-4	0.884	INTRON MESR3
2R	10569121	2R_10569121_SNP [dm3] 2R_14681616_SNP [dm6]	T	C	1.414e^-4	0.884	INTRON mspo
3R	10961137	3R_10961137_SNP [dm3] 3R_15135415_SNP [dm6]	T	C	1.415e^-4	0.884	INTRON CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	455492	X_455492_SNP [dm3] X_561459_SNP [dm6]	C	A	1.415e^-4	0.884	INTRON Appl
2L	17410969	2L_17410969_SNP [dm3] 2L_17410969_SNP [dm6]	T	C	1.416e^-4	0.884	SYNONYMOUS_CODING CG15141 UPSTREAM Rpb11 DOWNSTREAM CG31803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	20197953	3R_20197953_SNP [dm3] 3R_24372231_SNP [dm6]	T	A	1.420e^-4	0.884	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20197965	3R_20197965_INS [dm3] 3R_24372243_INS [dm6]	A	ACAG	1.420e^-4	0.884	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9707112	3R_9707112_SNP [dm3] 3R_13881390_SNP [dm6]	A	T	1.424e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	2400174	2L_2400174_SNP [dm3] 2L_2400174_SNP [dm6]	C	G	1.427e^-4	0.884	UPSTREAM VGlut INTRON VGlut
3R	15850066	3R_15850066_SNP [dm3] 3R_20024344_SNP [dm6]	T	C	1.429e^-4	0.884	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	20055088	3R_20055088_SNP [dm3] 3R_24229366_SNP [dm6]	C	T	1.431e^-4	0.884	UTR_3_PRIME Spase22-23 DOWNSTREAM CG13609 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17772545	3R_17772545_SNP [dm3] 3R_21946823_SNP [dm6]	G	T	1.436e^-4	0.884	INTERGENIC
2R	9509712	2R_9509712_SNP [dm3] 2R_13622207_SNP [dm6]	T	C	1.442e^-4	0.884	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	6504236	3L_6504236_SNP [dm3] 3L_6511136_SNP [dm6]	G	C	1.449e^-4	0.884	INTRON sfl
2R	19727517	2R_19727517_SNP [dm3] 2R_23839994_SNP [dm6]	T	C	1.457e^-4	0.884	UPSTREAM CR44805 DOWNSTREAM CG5549 EXON snoRNA:Psi18S-176	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10092006	3L_10092006_SNP [dm3] 3L_10098906_SNP [dm6]	G	A	1.459e^-4	0.884	UPSTREAM CG42825 DOWNSTREAM CG42826 INTRON dpr6
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	1.460e^-4	0.884	INTERGENIC
X	18157782	X_18157782_SNP [dm3] X_18263749_SNP [dm6]	G	A	1.468e^-4	0.884	INTERGENIC
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	1.476e^-4	0.884	INTERGENIC
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	1.476e^-4	0.884	INTERGENIC
2R	16692587	2R_16692587_SNP [dm3] 2R_20805082_SNP [dm6]	A	G	1.476e^-4	0.884	INTERGENIC
3R	10963512	3R_10963512_SNP [dm3] 3R_15137790_SNP [dm6]	C	G	1.490e^-4	0.884	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9802609	X_9802609_SNP [dm3] X_9908576_SNP [dm6]	G	C	1.494e^-4	0.884	DOWNSTREAM CG1986 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19489016	2R_19489016_SNP [dm3] 2R_23601493_SNP [dm6]	G	C	1.504e^-4	0.884	UPSTREAM CG42559 & 2 others DOWNSTREAM CG43209 INTRON CG10332 & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	24195971	3R_24195971_SNP [dm3] 3R_28370249_SNP [dm6]	A	G	1.511e^-4	0.884	INTERGENIC
3L	6680787	3L_6680787_SNP [dm3] 3L_6687687_SNP [dm6]	G	A	1.511e^-4	0.884	INTERGENIC
3R	18773744	3R_18773744_SNP [dm3] 3R_22948022_SNP [dm6]	T	C	1.512e^-4	0.884	INTRON klg	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4392135	3L_4392135_SNP [dm3] 3L_4392135_SNP [dm6]	C	T	1.514e^-4	0.884	INTRON slow	TF binding site mE1_TFBS_cad
2R	13163493	2R_13163493_SNP [dm3] 2R_17275988_SNP [dm6]	A	G	1.514e^-4	0.884	SYNONYMOUS_CODING mbl	TF binding site mE1_TFBS_HSA
2R	10370101	2R_10370101_DEL [dm3] 2R_14482596_DEL [dm6]	TCCT	T	1.515e^-4	0.884	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9881399	2L_9881399_SNP [dm3] 2L_9881399_SNP [dm6]	T	C	1.516e^-4	0.884	INTRON nAChRalpha6
X	20815354	X_20815354_SNP [dm3] X_20944327_SNP [dm6]	G	T	1.518e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26752159	3R_26752159_SNP [dm3] 3R_30926437_SNP [dm6]	G	T	1.519e^-4	0.884	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	6505644	3L_6505644_SNP [dm3] 3L_6512544_SNP [dm6]	C	T	1.519e^-4	0.884	INTRON sfl
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	1.533e^-4	0.884	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23456557	3R_23456557_SNP [dm3] 3R_27630835_SNP [dm6]	C	T	1.549e^-4	0.884	SYNONYMOUS_CODING Tusp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11851353	2R_11851353_SNP [dm3] 2R_15963848_SNP [dm6]	T	G	1.550e^-4	0.884	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	1.552e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20630403	2R_20630403_SNP [dm3] 2R_24742880_SNP [dm6]	G	A	1.562e^-4	0.884	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6496242	X_6496242_SNP [dm3] X_6602209_SNP [dm6]	C	T	1.571e^-4	0.884	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	22480779	3L_22480779_SNP [dm3] 3L_22487679_SNP [dm6]	G	A	1.572e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8444980	2L_8444980_SNP [dm3] 2L_8444980_SNP [dm6]	G	A	1.576e^-4	0.884	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM U26
2L	15584816	2L_15584816_SNP [dm3] 2L_15584816_SNP [dm6]	T	C	1.581e^-4	0.884	DOWNSTREAM kek3 INTERGENIC
X	20416657	X_20416657_DEL [dm3] X_20545630_DEL [dm6]	TAACTTGAACGTAACCAT...	T	1.581e^-4	0.884	INTRON RunxB	TF binding site mE1_TFBS_sbb
2R	16496567	2R_16496567_SNP [dm3] 2R_20609062_SNP [dm6]	T	G	1.582e^-4	0.884	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	1.588e^-4	0.884	INTRON PhKgamma	TF binding site mE1_TFBS_sens
2R	14430409	2R_14430409_SNP [dm3] 2R_18542904_SNP [dm6]	C	T	1.603e^-4	0.884	INTRON Rgk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5154991	2L_5154991_SNP [dm3] 2L_5154991_SNP [dm6]	A	C	1.603e^-4	0.884	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11184501	X_11184501_SNP [dm3] X_11290468_SNP [dm6]	C	G	1.606e^-4	0.884	INTRON CG44422
2R	10292473	2R_10292473_SNP [dm3] 2R_14404968_SNP [dm6]	A	G	1.612e^-4	0.884	INTERGENIC
X	21253977	X_21253977_SNP [dm3] X_21382950_SNP [dm6]	T	C	1.616e^-4	0.884	SYNONYMOUS_CODING slgA	TF binding site BDTNP1_TFBS_da
2R	10599883	2R_10599883_INS [dm3] 2R_14712378_INS [dm6]	C	CCC	1.618e^-4	0.884	INTRON mspo
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	1.636e^-4	0.884	INTRON CG6225
3R	14445151	3R_14445151_SNP [dm3] 3R_18619429_SNP [dm6]	T	C	1.637e^-4	0.884	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
2L	16953063	2L_16953063_SNP [dm3] 2L_16953063_SNP [dm6]	A	C	1.637e^-4	0.884	INTERGENIC
3R	10961131	3R_10961131_SNP [dm3] 3R_15135409_SNP [dm6]	C	T	1.638e^-4	0.884	INTRON CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16865188	2L_16865188_SNP [dm3] 2L_16865188_SNP [dm6]	G	T	1.638e^-4	0.884	INTERGENIC
3L	6501883	3L_6501883_SNP [dm3] 3L_6508783_SNP [dm6]	G	A	1.665e^-4	0.884	INTRON sfl
2L	15021667	2L_15021667_SNP [dm3] 2L_15021667_SNP [dm6]	G	C	1.684e^-4	0.884	INTRON GABA-B-R1
3R	25982524	3R_25982524_SNP [dm3] 3R_30156802_SNP [dm6]	T	G	1.699e^-4	0.884	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1121473	3L_1121473_SNP [dm3] 3L_1121473_SNP [dm6]	C	A	1.702e^-4	0.884	INTERGENIC
3L	12058930	3L_12058930_SNP [dm3] 3L_12065830_SNP [dm6]	T	C	1.702e^-4	0.884	UPSTREAM rols INTERGENIC
3L	13400560	3L_13400560_SNP [dm3] 3L_13407460_SNP [dm6]	G	C	1.705e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10238271	2R_10238271_SNP [dm3] 2R_14350766_SNP [dm6]	T	C	1.707e^-4	0.884	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3051633	2L_3051633_SNP [dm3] 2L_3051633_SNP [dm6]	T	C	1.710e^-4	0.884	NON_SYNONYMOUS_CODING v_2_k05816	TF binding site mE1_TFBS_chinmo
3R	9298634	3R_9298634_SNP [dm3] 3R_13472912_SNP [dm6]	T	A	1.711e^-4	0.884	INTERGENIC
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	1.714e^-4	0.884	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13727095	3R_13727095_SNP [dm3] 3R_17901373_SNP [dm6]	T	G	1.720e^-4	0.884	INTRON Rim
3L	2273734	3L_2273734_SNP [dm3] 3L_2273734_SNP [dm6]	T	C	1.726e^-4	0.884	UPSTREAM tRNA:CR32303 & 1 other INTERGENIC
3R	17319657	3R_17319657_SNP [dm3] 3R_21493935_SNP [dm6]	A	G	1.736e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10863972	2R_10863972_SNP [dm3] 2R_14976467_SNP [dm6]	T	G	1.739e^-4	0.884	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9867519	3R_9867519_SNP [dm3] 3R_14041797_SNP [dm6]	A	G	1.746e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	1.749e^-4	0.884	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	3854626	X_3854626_SNP [dm3] X_3960593_SNP [dm6]	G	A	1.749e^-4	0.884	INTRON lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	13401119	2R_13401119_SNP [dm3] 2R_17513614_SNP [dm6]	T	C	1.751e^-4	0.884	SYNONYMOUS_CODING CG4847 UPSTREAM CG4853	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20213799	2L_20213799_SNP [dm3] 2L_20213799_SNP [dm6]	T	A	1.761e^-4	0.884	INTERGENIC	transposable element FlyBase
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	1.762e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	20900429	X_20900429_SNP [dm3] X_21029402_SNP [dm6]	G	T	1.762e^-4	0.884	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
3L	4488074	3L_4488074_SNP [dm3] 3L_4488074_SNP [dm6]	G	A	1.766e^-4	0.884	INTRON CG13722
3R	26566710	3R_26566710_SNP [dm3] 3R_30740988_SNP [dm6]	T	C	1.772e^-4	0.884	INTERGENIC
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	1.782e^-4	0.884	SYNONYMOUS_CODING bi INTRON CR32773
3R	8600644	3R_8600644_SNP [dm3] 3R_12774922_SNP [dm6]	C	T	1.783e^-4	0.884	INTRON beat-Vc
X	14221260	X_14221260_INS [dm3] X_14327227_INS [dm6]	A	AA	1.785e^-4	0.884	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	10502991	2L_10502991_SNP [dm3] 2L_10502991_SNP [dm6]	T	G	1.785e^-4	0.884	INTRON Myo31DF
2R	20630782	2R_20630782_DEL [dm3] 2R_24743259_DEL [dm6]	GAG	G	1.790e^-4	0.884	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16113302	2R_16113302_SNP [dm3] 2R_20225797_SNP [dm6]	T	G	1.791e^-4	0.884	INTERGENIC
2L	5725522	2L_5725522_SNP [dm3] 2L_5725522_SNP [dm6]	C	T	1.797e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19901227	X_19901227_SNP [dm3] X_20007194_SNP [dm6]	C	A	1.804e^-4	0.884	NON_SYNONYMOUS_CODING Dop2R	TF binding site mE1_TFBS_chinmo
3R	20200161	3R_20200161_SNP [dm3] 3R_24374439_SNP [dm6]	G	T	1.808e^-4	0.884	NON_SYNONYMOUS_CODING CG17781	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14480760	3L_14480760_SNP [dm3] 3L_14487660_SNP [dm6]	A	T	1.812e^-4	0.884	INTRON bbg
2L	5725521	2L_5725521_SNP [dm3] 2L_5725521_SNP [dm6]	A	G	1.818e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	6707699	X_6707699_SNP [dm3] X_6813666_SNP [dm6]	G	A	1.824e^-4	0.884	UTR_3_PRIME pod1 UPSTREAM iav DOWNSTREAM pod1
2R	16083719	2R_16083719_SNP [dm3] 2R_20196214_SNP [dm6]	C	T	1.843e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6505688	3L_6505688_SNP [dm3] 3L_6512588_SNP [dm6]	A	G	1.864e^-4	0.884	INTRON sfl
3L	4673533	3L_4673533_SNP [dm3] 3L_4673533_SNP [dm6]	G	A	1.874e^-4	0.884	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18157721	X_18157721_SNP [dm3] X_18263688_SNP [dm6]	A	G	1.876e^-4	0.884	INTERGENIC
X	18157727	X_18157727_SNP [dm3] X_18263694_SNP [dm6]	T	A	1.876e^-4	0.884	INTERGENIC
X	6120660	X_6120660_SNP [dm3] X_6226627_SNP [dm6]	G	A	1.878e^-4	0.884	SYNONYMOUS_CODING CG14446	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3693459	2L_3693459_SNP [dm3] 2L_3693459_SNP [dm6]	T	G	1.891e^-4	0.884	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 2 others
X	14515417	X_14515417_SNP [dm3] X_14621384_SNP [dm6]	G	T	1.894e^-4	0.884	INTRON NetA
2R	1969063	2R_1969063_SNP [dm3] 2R_6081558_SNP [dm6]	T	C	1.896e^-4	0.884	UPSTREAM CG14590 INTRON Ars2
3R	776330	3R_776330_SNP [dm3] 3R_4950608_SNP [dm6]	G	A	1.897e^-4	0.884	SYNONYMOUS_CODING UbcD6
X	14217414	X_14217414_SNP [dm3] X_14323381_SNP [dm6]	T	A	1.916e^-4	0.884	INTRON dpr8
3L	7137080	3L_7137080_SNP [dm3] 3L_7143980_SNP [dm6]	G	A	1.936e^-4	0.884	SYNONYMOUS_CODING corn UTR_3_PRIME corn DOWNSTREAM melt & 1 other
3R	16987779	3R_16987779_DEL [dm3] 3R_21162057_DEL [dm6]	AA	A	1.948e^-4	0.884	UPSTREAM CG10824 INTRON SNF4Agamma
2L	11875563	2L_11875563_SNP [dm3] 2L_11875563_SNP [dm6]	A	C	1.951e^-4	0.884	INTRON Pde1c
X	21382235	X_21382235_SNP [dm3] X_21511208_SNP [dm6]	T	C	1.953e^-4	0.884	INTRON CR45082
3L	6500437	3L_6500437_SNP [dm3] 3L_6507337_SNP [dm6]	T	A	1.974e^-4	0.884	INTRON sfl
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	1.977e^-4	0.884	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	16083698	2R_16083698_SNP [dm3] 2R_20196193_SNP [dm6]	A	G	1.980e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16083730	2R_16083730_SNP [dm3] 2R_20196225_SNP [dm6]	T	A	1.980e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15039097	2L_15039097_SNP [dm3] 2L_15039097_SNP [dm6]	C	A	1.987e^-4	0.884	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	21359030	X_21359030_SNP [dm3] X_21488003_SNP [dm6]	A	G	1.995e^-4	0.884	INTERGENIC
3L	4488812	3L_4488812_INS [dm3] 3L_4488812_INS [dm6]	T	TCTT	2.024e^-4	0.884	INTRON CG13722
X	3857659	X_3857659_SNP [dm3] X_3963626_SNP [dm6]	C	T	2.026e^-4	0.884	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4487347	3L_4487347_SNP [dm3] 3L_4487347_SNP [dm6]	G	A	2.030e^-4	0.884	SYNONYMOUS_CODING CG13722
2R	20432540	2R_20432540_INS [dm3] 2R_24545017_INS [dm6]	G	GATCAGCAGTAGCAG...	2.042e^-4	0.884	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8728881	X_8728881_SNP [dm3] X_8834848_SNP [dm6]	A	C	2.046e^-4	0.884	UPSTREAM CR45537 INTERGENIC
3R	570536	3R_570536_SNP [dm3] 3R_4744814_SNP [dm6]	T	A	2.047e^-4	0.884	INTRON tacc
3L	8055261	3L_8055261_SNP [dm3] 3L_8062161_SNP [dm6]	T	C	2.048e^-4	0.884	INTERGENIC
3L	8665170	3L_8665170_SNP [dm3] 3L_8672070_SNP [dm6]	G	T	2.052e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	17362177	X_17362177_SNP [dm3] X_17468144_SNP [dm6]	T	C	2.081e^-4	0.884	INTRON CG43658
3R	26701010	3R_26701010_DEL [dm3] 3R_30875288_DEL [dm6]	CACGATCCTC	C	2.084e^-4	0.884	CODON_DELETION CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5725530	2L_5725530_MNP [dm3] 2L_5725530_MNP [dm6]	ATA	TAG	2.089e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17195474	3R_17195474_SNP [dm3] 3R_21369752_SNP [dm6]	C	T	2.094e^-4	0.884	UTR_3_PRIME pre-mod_mdg4_-U DOWNSTREAM mod_mdg4_ & 2 others INTRON mod_mdg4_
2L	19381526	2L_19381526_SNP [dm3] 2L_19381526_SNP [dm6]	A	G	2.103e^-4	0.884	INTRON CG17350	TF binding site mE1_TFBS_cad
3R	22727018	3R_22727018_SNP [dm3] 3R_26901296_SNP [dm6]	G	T	2.110e^-4	0.884	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	8141633	2R_8141633_SNP [dm3] 2R_12254128_SNP [dm6]	G	C	2.121e^-4	0.884	UTR_5_PRIME CG13168
X	10804151	X_10804151_SNP [dm3] X_10910118_SNP [dm6]	T	G	2.126e^-4	0.884	INTRON CG43901
X	18157720	X_18157720_SNP [dm3] X_18263687_SNP [dm6]	A	T	2.132e^-4	0.884	INTERGENIC
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	2.139e^-4	0.884	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	15504364	2L_15504364_SNP [dm3] 2L_15504364_SNP [dm6]	C	G	2.140e^-4	0.884	UTR_3_PRIME lace
2L	8041532	2L_8041532_SNP [dm3] 2L_8041532_SNP [dm6]	A	C	2.140e^-4	0.884	NON_SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site mE1_TFBS_sens
2R	12536532	2R_12536532_SNP [dm3] 2R_16649027_SNP [dm6]	T	A	2.149e^-4	0.884	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	2.160e^-4	0.884	INTERGENIC
X	8708859	X_8708859_SNP [dm3] X_8814826_SNP [dm6]	C	G	2.167e^-4	0.884	INTERGENIC
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	2.167e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	6653166	2R_6653166_SNP [dm3] 2R_10765661_SNP [dm6]	C	T	2.170e^-4	0.884	INTRON CG33144
3R	26699928	3R_26699928_SNP [dm3] 3R_30874206_SNP [dm6]	A	C	2.172e^-4	0.884	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9869032	3R_9869032_SNP [dm3] 3R_14043310_SNP [dm6]	T	C	2.174e^-4	0.884	INTERGENIC
3L	5372839	3L_5372839_SNP [dm3] 3L_5379739_SNP [dm6]	A	G	2.177e^-4	0.884	SYNONYMOUS_CODING Ir64a
2R	8173696	2R_8173696_SNP [dm3] 2R_12286191_SNP [dm6]	T	C	2.181e^-4	0.884	NON_SYNONYMOUS_CODING CG42700 INTRON CG42700
2L	4417107	2L_4417107_SNP [dm3] 2L_4417107_SNP [dm6]	T	A	2.184e^-4	0.884	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	2.187e^-4	0.884	INTRON CG42788
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	2.187e^-4	0.884	INTRON Tgi
3L	4485607	3L_4485607_SNP [dm3] 3L_4485607_SNP [dm6]	T	G	2.191e^-4	0.884	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5725573	2L_5725573_SNP [dm3] 2L_5725573_SNP [dm6]	T	A	2.192e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7909581	X_7909581_SNP [dm3] X_8015548_SNP [dm6]	C	T	2.198e^-4	0.884	INTRON Tbh
X	3978085	X_3978085_SNP [dm3] X_4084052_SNP [dm6]	G	A	2.202e^-4	0.884	SYNONYMOUS_CODING CG43689	TF binding site mE1_TFBS_chinmo
3R	19139886	3R_19139886_INS [dm3] 3R_23314164_INS [dm6]	C	CAC	2.206e^-4	0.884	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	2.208e^-4	0.884	INTERGENIC
X	18905965	X_18905965_SNP [dm3] X_19011932_SNP [dm6]	C	T	2.212e^-4	0.884	SYNONYMOUS_CODING CG43759	TF binding site mE1_TFBS_chinmo
X	17153774	X_17153774_SNP [dm3] X_17259741_SNP [dm6]	T	C	2.219e^-4	0.884	SYNONYMOUS_CODING f INTRON f	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12056149	3L_12056149_SNP [dm3] 3L_12063049_SNP [dm6]	T	A	2.221e^-4	0.884	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22149069	3R_22149069_SNP [dm3] 3R_26323347_SNP [dm6]	G	A	2.221e^-4	0.884	INTRON CG33970
2L	5082347	2L_5082347_SNP [dm3] 2L_5082347_SNP [dm6]	G	C	2.228e^-4	0.884	INTRON pgant5
3R	13851036	3R_13851036_SNP [dm3] 3R_18025314_SNP [dm6]	C	G	2.233e^-4	0.884	UTR_3_PRIME CG7794
2L	10502990	2L_10502990_SNP [dm3] 2L_10502990_SNP [dm6]	T	A	2.239e^-4	0.884	INTRON Myo31DF
X	14097589	X_14097589_SNP [dm3] X_14203556_SNP [dm6]	C	T	2.247e^-4	0.884	SYNONYMOUS_CODING l_1_G0007 DOWNSTREAM l_1_G0469	TF binding site BDTNP1_TFBS_dl
2L	6220938	2L_6220938_SNP [dm3] 2L_6220938_SNP [dm6]	C	G	2.247e^-4	0.884	INTERGENIC
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	2.248e^-4	0.884	INTRON bnl
3R	14695618	3R_14695618_SNP [dm3] 3R_18869896_SNP [dm6]	C	G	2.262e^-4	0.884	INTERGENIC
2L	6212293	2L_6212293_DEL [dm3] 2L_6212293_DEL [dm6]	TCGG	T	2.262e^-4	0.884	INTERGENIC
3R	27600888	3R_27600888_INS [dm3] 3R_31775166_INS [dm6]	A	AG	2.268e^-4	0.884	UTR_3_PRIME CG2126 DOWNSTREAM sip3
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	2.273e^-4	0.884	DOWNSTREAM CG14476 INTERGENIC
2R	18193030	2R_18193030_SNP [dm3] 2R_22305525_SNP [dm6]	C	T	2.274e^-4	0.884	INTRON wdp
3R	26139093	3R_26139093_SNP [dm3] 3R_30313371_SNP [dm6]	A	T	2.276e^-4	0.884	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20899395	X_20899395_SNP [dm3] X_21028368_SNP [dm6]	G	A	2.278e^-4	0.884	UPSTREAM CG1532 DOWNSTREAM CG1529 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	2.279e^-4	0.884	INTERGENIC
3L	11348436	3L_11348436_SNP [dm3] 3L_11355336_SNP [dm6]	A	G	2.280e^-4	0.884	INTERGENIC
3L	11006602	3L_11006602_SNP [dm3] 3L_11013502_SNP [dm6]	T	A	2.282e^-4	0.884	INTERGENIC
2L	13803894	2L_13803894_SNP [dm3] 2L_13803894_SNP [dm6]	G	C	2.294e^-4	0.884	UTR_5_PRIME CAH1
3R	14889173	3R_14889173_DEL [dm3] 3R_19063451_DEL [dm6]	GGTTGGTCG	G	2.298e^-4	0.884	INTRON cdi
3L	12235202	3L_12235202_SNP [dm3] 3L_12242102_SNP [dm6]	A	T	2.314e^-4	0.884	INTRON app
3R	22149066	3R_22149066_SNP [dm3] 3R_26323344_SNP [dm6]	T	C	2.314e^-4	0.884	INTRON CG33970
3L	10639931	3L_10639931_SNP [dm3] 3L_10646831_SNP [dm6]	G	A	2.336e^-4	0.884	INTRON CG32066
3R	11600118	3R_11600118_SNP [dm3] 3R_15774396_SNP [dm6]	G	T	2.342e^-4	0.884	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
X	17362533	X_17362533_INS [dm3] X_17468500_INS [dm6]	G	GGGTTACACACAAAG...	2.345e^-4	0.884	INTRON CG43658
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	2.347e^-4	0.884	INTRON sfl
X	12235955	X_12235955_SNP [dm3] X_12341922_SNP [dm6]	A	T	2.350e^-4	0.884	INTERGENIC
3L	10090925	3L_10090925_SNP [dm3] 3L_10097825_SNP [dm6]	G	A	2.353e^-4	0.884	SYNONYMOUS_CODING CG42825 INTRON dpr6
3R	20788312	3R_20788312_SNP [dm3] 3R_24962590_SNP [dm6]	G	T	2.359e^-4	0.884	INTERGENIC
2R	8636394	2R_8636394_SNP [dm3] 2R_12748889_SNP [dm6]	T	A	2.363e^-4	0.884	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8683956	2L_8683956_DEL [dm3] 2L_8683956_DEL [dm6]	AAGAAATGCATGTACCTA...	A	2.371e^-4	0.884	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
3L	14325471	3L_14325471_SNP [dm3] 3L_14332371_SNP [dm6]	A	C	2.375e^-4	0.884	INTRON fz
3R	17749973	3R_17749973_SNP [dm3] 3R_21924251_SNP [dm6]	A	G	2.375e^-4	0.884	INTERGENIC
3R	10410532	3R_10410532_SNP [dm3] 3R_14584810_SNP [dm6]	A	T	2.383e^-4	0.884	INTRON stumps
2L	8116808	2L_8116808_SNP [dm3] 2L_8116808_SNP [dm6]	T	C	2.383e^-4	0.884	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	2.408e^-4	0.884	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3L	6967518	3L_6967518_SNP [dm3] 3L_6974418_SNP [dm6]	G	A	2.410e^-4	0.884	SYNONYMOUS_CODING Galphai
4	259159	4_259159_SNP [dm3] 4_238533_SNP [dm6]	C	T	2.412e^-4	0.884	INTRON CG1674
3L	16555227	3L_16555227_SNP [dm3] 3L_16562127_SNP [dm6]	G	A	2.418e^-4	0.884	INTERGENIC
2L	17410972	2L_17410972_SNP [dm3] 2L_17410972_SNP [dm6]	G	T	2.421e^-4	0.884	SYNONYMOUS_CODING CG15141 UPSTREAM Rpb11 DOWNSTREAM CG31803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8683603	2L_8683603_SNP [dm3] 2L_8683603_SNP [dm6]	A	T	2.427e^-4	0.884	DOWNSTREAM tRNA:CR31888 & 1 other INTRON CG9289
2R	14491808	2R_14491808_SNP [dm3] 2R_18604303_SNP [dm6]	C	T	2.429e^-4	0.884	INTRON GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13354118	3R_13354118_SNP [dm3] 3R_17528396_SNP [dm6]	A	G	2.433e^-4	0.884	INTERGENIC
3R	10610018	3R_10610018_SNP [dm3] 3R_14784296_SNP [dm6]	T	A	2.436e^-4	0.884	INTRON jvl
3L	12056205	3L_12056205_SNP [dm3] 3L_12063105_SNP [dm6]	T	A	2.442e^-4	0.884	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18762524	3R_18762524_SNP [dm3] 3R_22936802_SNP [dm6]	G	A	2.447e^-4	0.884	INTRON klg
3L	13407492	3L_13407492_SNP [dm3] 3L_13414392_SNP [dm6]	A	G	2.450e^-4	0.884	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
2L	14996687	2L_14996687_SNP [dm3] 2L_14996687_SNP [dm6]	A	G	2.454e^-4	0.884	INTRON mol
3R	17743865	3R_17743865_SNP [dm3] 3R_21918143_SNP [dm6]	T	G	2.456e^-4	0.884	INTERGENIC
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	2.458e^-4	0.884	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	415404	3L_415404_SNP [dm3] 3L_415404_SNP [dm6]	C	G	2.461e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	2.462e^-4	0.884	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14217097	X_14217097_SNP [dm3] X_14323064_SNP [dm6]	C	T	2.469e^-4	0.884	INTRON dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	16555349	3L_16555349_SNP [dm3] 3L_16562249_SNP [dm6]	T	A	2.478e^-4	0.884	INTERGENIC
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	2.483e^-4	0.884	DOWNSTREAM CR43964 INTERGENIC
3R	26697868	3R_26697868_SNP [dm3] 3R_30872146_SNP [dm6]	T	C	2.497e^-4	0.884	SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad
3L	5264412	3L_5264412_SNP [dm3] 3L_5271312_SNP [dm6]	A	T	2.500e^-4	0.884	INTRON shep
X	18479942	X_18479942_SNP [dm3] X_18585909_SNP [dm6]	A	G	2.503e^-4	0.884	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	2.510e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16997726	3R_16997726_SNP [dm3] 3R_21172004_SNP [dm6]	T	C	2.513e^-4	0.884	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
3R	27172299	3R_27172299_SNP [dm3] 3R_31346577_SNP [dm6]	C	T	2.523e^-4	0.884	INTRON CG34347
X	14865046	X_14865046_SNP [dm3] X_14971013_SNP [dm6]	C	T	2.527e^-4	0.884	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	8126420	3L_8126420_SNP [dm3] 3L_8133320_SNP [dm6]	G	A	2.529e^-4	0.884	SYNONYMOUS_CODING CG7504
2R	19189894	2R_19189894_SNP [dm3] 2R_23302371_SNP [dm6]	T	G	2.531e^-4	0.884	INTERGENIC
2R	20673643	2R_20673643_SNP [dm3] 2R_24786120_SNP [dm6]	G	A	2.533e^-4	0.884	DOWNSTREAM CG3589 INTRON key	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens
2R	10368035	2R_10368035_SNP [dm3] 2R_14480530_SNP [dm6]	A	T	2.537e^-4	0.884	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	21520192	3R_21520192_SNP [dm3] 3R_25694470_SNP [dm6]	G	A	2.538e^-4	0.884	INTERGENIC
2R	13946279	2R_13946279_SNP [dm3] 2R_18058774_SNP [dm6]	G	T	2.548e^-4	0.884	EXON CR45314
3L	10307913	3L_10307913_SNP [dm3] 3L_10314813_SNP [dm6]	G	A	2.554e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11952239	2L_11952239_SNP [dm3] 2L_11952239_SNP [dm6]	T	A	2.563e^-4	0.884	EXON CR43314
3R	27118394	3R_27118394_SNP [dm3] 3R_31292672_SNP [dm6]	G	C	2.568e^-4	0.884	INTERGENIC
3R	18794925	3R_18794925_INS [dm3] 3R_22969203_INS [dm6]	C	CCCTAACGC	2.570e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
X	9333510	X_9333510_SNP [dm3] X_9439477_SNP [dm6]	T	C	2.581e^-4	0.884	INTRON mgl
X	14515419	X_14515419_SNP [dm3] X_14621386_SNP [dm6]	A	C	2.585e^-4	0.884	INTRON NetA
2L	12153587	2L_12153587_SNP [dm3] 2L_12153587_SNP [dm6]	G	A	2.590e^-4	0.884	SYNONYMOUS_CODING CG31760
3R	15637381	3R_15637381_DEL [dm3] 3R_19811659_DEL [dm6]	AA	A	2.591e^-4	0.884	INTRON bnl
3L	4487887	3L_4487887_SNP [dm3] 3L_4487887_SNP [dm6]	A	G	2.591e^-4	0.884	INTRON CG13722
2L	15021653	2L_15021653_SNP [dm3] 2L_15021653_SNP [dm6]	C	A	2.591e^-4	0.884	INTRON GABA-B-R1
X	20324416	X_20324416_SNP [dm3] X_20453389_SNP [dm6]	G	T	2.601e^-4	0.884	INTRON CG32506
3L	5373280	3L_5373280_SNP [dm3] 3L_5380180_SNP [dm6]	C	T	2.602e^-4	0.884	SYNONYMOUS_CODING Ir64a
3L	11006579	3L_11006579_SNP [dm3] 3L_11013479_SNP [dm6]	T	C	2.602e^-4	0.884	INTERGENIC
2L	1744898	2L_1744898_INS [dm3] 2L_1744898_INS [dm6]	T	TAATGGCCGGGTCG...	2.611e^-4	0.884	INTRON CG17646
2R	20689904	2R_20689904_SNP [dm3] 2R_24802381_SNP [dm6]	C	G	2.614e^-4	0.884	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	10852534	3L_10852534_SNP [dm3] 3L_10859434_SNP [dm6]	T	C	2.618e^-4	0.884	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
3L	21555224	3L_21555224_SNP [dm3] 3L_21562124_SNP [dm6]	T	C	2.620e^-4	0.884	UTR_5_PRIME CapaR
2R	6660950	2R_6660950_DEL [dm3] 2R_10773445_DEL [dm6]	CGCTGCCCATCCTCTGCTCC...	C	2.620e^-4	0.884	INTRON CG33144
2R	8169033	2R_8169033_SNP [dm3] 2R_12281528_SNP [dm6]	A	G	2.622e^-4	0.884	INTRON CG42700
2L	20213788	2L_20213788_SNP [dm3] 2L_20213788_SNP [dm6]	A	C	2.624e^-4	0.884	INTERGENIC	transposable element FlyBase
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	2.632e^-4	0.884	INTRON gish	TF binding site BDTNP1_TFBS_dl
X	11753212	X_11753212_SNP [dm3] X_11859179_SNP [dm6]	G	A	2.641e^-4	0.884	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	19397189	2L_19397189_SNP [dm3] 2L_19397189_SNP [dm6]	G	T	2.645e^-4	0.884	DOWNSTREAM CG31798 INTRON CG17544	TF binding site mE1_TFBS_Trl
2R	9883181	2R_9883181_SNP [dm3] 2R_13995676_SNP [dm6]	A	C	2.645e^-4	0.884	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	16864327	2L_16864327_SNP [dm3] 2L_16864327_SNP [dm6]	A	G	2.686e^-4	0.884	INTERGENIC
3R	15652271	3R_15652271_SNP [dm3] 3R_19826549_SNP [dm6]	A	C	2.688e^-4	0.884	INTRON bnl
2L	581411	2L_581411_SNP [dm3] 2L_581411_SNP [dm6]	A	G	2.703e^-4	0.884	INTERGENIC
2L	15111364	2L_15111364_SNP [dm3] 2L_15111364_SNP [dm6]	A	C	2.709e^-4	0.884	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	21255722	X_21255722_SNP [dm3] X_21384695_SNP [dm6]	C	A	2.723e^-4	0.884	UTR_3_PRIME slgA DOWNSTREAM slgA & 1 other
2L	19383086	2L_19383086_SNP [dm3] 2L_19383086_SNP [dm6]	A	G	2.723e^-4	0.884	UTR_3_PRIME CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
3R	16825525	3R_16825525_SNP [dm3] 3R_20999803_SNP [dm6]	T	A	2.731e^-4	0.884	INTRON Calx
X	18157762	X_18157762_SNP [dm3] X_18263729_SNP [dm6]	C	A	2.733e^-4	0.884	INTERGENIC
X	9284937	X_9284937_SNP [dm3] X_9390904_SNP [dm6]	A	T	2.737e^-4	0.884	INTRON mgl
2L	9370505	2L_9370505_INS [dm3] 2L_9370505_INS [dm6]	T	TGT	2.737e^-4	0.884	UTR_3_PRIME Shawl
2R	14665497	2R_14665497_SNP [dm3] 2R_18777992_SNP [dm6]	C	G	2.743e^-4	0.884	DOWNSTREAM CR43964 INTERGENIC
X	14348406	X_14348406_SNP [dm3] X_14454373_SNP [dm6]	T	G	2.749e^-4	0.884	INTRON dpr8
3L	6134100	3L_6134100_INS [dm3] 3L_6141000_INS [dm6]	A	AAAAACGATTTTTTTA...	2.750e^-4	0.884	DOWNSTREAM Cpr65Aw INTERGENIC
2L	10078404	2L_10078404_DEL [dm3] 2L_10078404_DEL [dm6]	TT	T	2.768e^-4	0.884	INTRON CG44153
3L	2322939	3L_2322939_SNP [dm3] 3L_2322939_SNP [dm6]	C	T	2.773e^-4	0.884	INTRON MsR1
X	6543909	X_6543909_SNP [dm3] X_6649876_SNP [dm6]	C	T	2.779e^-4	0.884	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4083320	X_4083320_SNP [dm3] X_4189287_SNP [dm6]	C	T	2.785e^-4	0.884	INTRON Fas2	TF binding site BDTNP1_TFBS_twi
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	2.793e^-4	0.884	INTRON dlg1	TF binding site mE1_TFBS_HSA
3L	14480884	3L_14480884_SNP [dm3] 3L_14487784_SNP [dm6]	T	C	2.795e^-4	0.884	INTRON bbg
3R	26429764	3R_26429764_SNP [dm3] 3R_30604042_SNP [dm6]	T	C	2.804e^-4	0.884	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
3R	16770678	3R_16770678_SNP [dm3] 3R_20944956_SNP [dm6]	A	G	2.807e^-4	0.884	INTRON CG31191
X	17362189	X_17362189_INS [dm3] X_17468156_INS [dm6]	T	CGCCATTCCCCATTC...	2.809e^-4	0.884	INTRON CG43658
X	17362206	X_17362206_SNP [dm3] X_17468173_SNP [dm6]	C	T	2.809e^-4	0.884	INTRON CG43658
3R	27117270	3R_27117270_SNP [dm3] 3R_31291548_SNP [dm6]	A	C	2.811e^-4	0.884	INTERGENIC
2L	2746294	2L_2746294_SNP [dm3] 2L_2746294_SNP [dm6]	G	A	2.811e^-4	0.884	NON_SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
2R	17735605	2R_17735605_SNP [dm3] 2R_21848100_SNP [dm6]	C	T	2.812e^-4	0.884	DOWNSTREAM tRNA:CR30406 INTERGENIC
X	21363832	X_21363832_SNP [dm3] X_21492805_SNP [dm6]	A	G	2.815e^-4	0.884	INTERGENIC
2R	14903295	2R_14903295_SNP [dm3] 2R_19015790_SNP [dm6]	T	C	2.816e^-4	0.884	INTERGENIC
3R	18809497	3R_18809497_SNP [dm3] 3R_22983775_SNP [dm6]	A	T	2.824e^-4	0.884	INTRON Nha2
2R	20629833	2R_20629833_SNP [dm3] 2R_24742310_SNP [dm6]	T	C	2.824e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5725640	2L_5725640_SNP [dm3] 2L_5725640_SNP [dm6]	C	A	2.827e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030
2L	13691627	2L_13691627_SNP [dm3] 2L_13691627_SNP [dm6]	C	T	2.829e^-4	0.884	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20900440	X_20900440_SNP [dm3] X_21029413_SNP [dm6]	G	T	2.845e^-4	0.884	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2R	6451052	2R_6451052_SNP [dm3] 2R_10563547_SNP [dm6]	A	G	2.849e^-4	0.884	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18337241	3R_18337241_SNP [dm3] 3R_22511519_SNP [dm6]	G	A	2.849e^-4	0.884	INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	14564886	3L_14564886_SNP [dm3] 3L_14571786_SNP [dm6]	C	A	2.853e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9415630	2L_9415630_SNP [dm3] 2L_9415630_SNP [dm6]	A	T	2.858e^-4	0.884	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5725387	2L_5725387_SNP [dm3] 2L_5725387_SNP [dm6]	G	T	2.867e^-4	0.884	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4156543	2L_4156543_SNP [dm3] 2L_4156543_SNP [dm6]	G	T	2.875e^-4	0.884	INTERGENIC
3R	13945432	3R_13945432_SNP [dm3] 3R_18119710_SNP [dm6]	T	G	2.877e^-4	0.884	INTRON sr
3L	10925041	3L_10925041_SNP [dm3] 3L_10931941_SNP [dm6]	C	T	2.881e^-4	0.884	INTERGENIC
3R	4912088	3R_4912088_SNP [dm3] 3R_9086366_SNP [dm6]	A	C	2.882e^-4	0.884	INTRON pum
3R	20197946	3R_20197946_SNP [dm3] 3R_24372224_SNP [dm6]	C	G	2.884e^-4	0.884	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20114500	2R_20114500_SNP [dm3] 2R_24226977_SNP [dm6]	C	A	2.886e^-4	0.884	INTRON CG30419
X	6866242	X_6866242_SNP [dm3] X_6972209_SNP [dm6]	T	G	2.895e^-4	0.884	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
X	21942750	X_21942750_SNP [dm3] X_22540914_SNP [dm6]	T	C	2.908e^-4	0.884	UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27296119	3R_27296119_SNP [dm3] 3R_31470397_SNP [dm6]	T	G	2.908e^-4	0.884	DOWNSTREAM CR45554 INTERGENIC
3R	15829665	3R_15829665_SNP [dm3] 3R_20003943_SNP [dm6]	C	T	2.913e^-4	0.884	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
X	11705418	X_11705418_SNP [dm3] X_11811385_SNP [dm6]	T	G	2.915e^-4	0.884	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10367971	2R_10367971_DEL [dm3] 2R_14480466_DEL [dm6]	AA	A	2.926e^-4	0.884	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3662367	3L_3662367_SNP [dm3] 3L_3662367_SNP [dm6]	G	C	2.934e^-4	0.884	INTERGENIC
2L	13795939	2L_13795939_SNP [dm3] 2L_13795939_SNP [dm6]	T	C	2.934e^-4	0.884	SYNONYMOUS_CODING Sec71	TF binding site mE1_TFBS_cad
2L	10207344	2L_10207344_SNP [dm3] 2L_10207344_SNP [dm6]	T	A	2.938e^-4	0.884	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
2R	14911285	2R_14911285_SNP [dm3] 2R_19023780_SNP [dm6]	T	A	2.954e^-4	0.884	INTRON 5-HT1B	TF binding site mE1_TFBS_cad
3R	13727094	3R_13727094_SNP [dm3] 3R_17901372_SNP [dm6]	G	T	2.968e^-4	0.884	INTRON Rim
2R	19663848	2R_19663848_SNP [dm3] 2R_23776325_SNP [dm6]	T	G	2.971e^-4	0.884	INTRON CG9850
3R	24094219	3R_24094219_SNP [dm3] 3R_28268497_SNP [dm6]	A	G	2.976e^-4	0.884	INTERGENIC
3L	6503754	3L_6503754_SNP [dm3] 3L_6510654_SNP [dm6]	C	T	2.989e^-4	0.884	INTRON sfl
2R	12331930	2R_12331930_DEL [dm3] 2R_16444425_DEL [dm6]	TT	T	2.992e^-4	0.884	INTRON CG4409
3L	6493990	3L_6493990_SNP [dm3] 3L_6500890_SNP [dm6]	T	A	2.995e^-4	0.884	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	3.000e^-4	0.884	INTRON fz
X	5527310	X_5527310_SNP [dm3] X_5633277_SNP [dm6]	G	T	3.003e^-4	0.884	INTRON CG42492
3R	16784956	3R_16784956_SNP [dm3] 3R_20959234_SNP [dm6]	C	T	3.004e^-4	0.884	SPLICE_SITE_REGION Atpalpha INTRON Atpalpha
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	3.030e^-4	0.884	UPSTREAM CG2113 INTERGENIC
3R	21520201	3R_21520201_SNP [dm3] 3R_25694479_SNP [dm6]	C	T	3.031e^-4	0.884	INTERGENIC
3L	2193285	3L_2193285_SNP [dm3] 3L_2193285_SNP [dm6]	A	T	3.031e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	3.033e^-4	0.884	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4081609	X_4081609_SNP [dm3] X_4187576_SNP [dm6]	A	C	3.038e^-4	0.884	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13775857	2L_13775857_SNP [dm3] 2L_13775857_SNP [dm6]	A	C	3.041e^-4	0.884	INTRON CG9008
3R	23180609	3R_23180609_SNP [dm3] 3R_27354887_SNP [dm6]	G	C	3.041e^-4	0.884	INTRON CG42534
2L	8330528	2L_8330528_SNP [dm3] 2L_8330528_SNP [dm6]	A	G	3.047e^-4	0.884	INTRON CG14275
3R	7924520	3R_7924520_SNP [dm3] 3R_12098798_SNP [dm6]	T	A	3.048e^-4	0.884	INTRON dpr17
X	7909576	X_7909576_SNP [dm3] X_8015543_SNP [dm6]	A	G	3.052e^-4	0.884	INTRON Tbh
3L	6505653	3L_6505653_SNP [dm3] 3L_6512553_SNP [dm6]	A	C	3.067e^-4	0.884	INTRON sfl
3L	10905464	3L_10905464_SNP [dm3] 3L_10912364_SNP [dm6]	G	C	3.069e^-4	0.884	INTERGENIC
2L	8709823	2L_8709823_SNP [dm3] 2L_8709823_SNP [dm6]	A	T	3.083e^-4	0.884	UPSTREAM Hnf4 DOWNSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27592981	3R_27592981_SNP [dm3] 3R_31767259_SNP [dm6]	T	A	3.085e^-4	0.884	UPSTREAM pncr017:3R EXON CR43436
2R	10368009	2R_10368009_SNP [dm3] 2R_14480504_SNP [dm6]	C	T	3.093e^-4	0.884	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	9798743	2R_9798743_SNP [dm3] 2R_13911238_SNP [dm6]	A	T	3.101e^-4	0.884	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1682877	3L_1682877_SNP [dm3] 3L_1682877_SNP [dm6]	T	C	3.104e^-4	0.884	INTRON CG7991
3L	7616227	3L_7616227_SNP [dm3] 3L_7623127_SNP [dm6]	A	C	3.107e^-4	0.884	INTRON CG33275	TF binding site BDTNP1_TFBS_dl
X	15999712	X_15999712_DEL [dm3] X_16105679_DEL [dm6]	TT	T	3.110e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	6895949	2L_6895949_SNP [dm3] 2L_6895949_SNP [dm6]	T	C	3.111e^-4	0.884	UPSTREAM Nlg2 INTRON Nlg2
3R	17319563	3R_17319563_SNP [dm3] 3R_21493841_SNP [dm6]	A	G	3.111e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9883559	2R_9883559_SNP [dm3] 2R_13996054_SNP [dm6]	A	C	3.115e^-4	0.884	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10599908	2R_10599908_SNP [dm3] 2R_14712403_SNP [dm6]	G	T	3.120e^-4	0.884	INTRON mspo
3R	26665644	3R_26665644_SNP [dm3] 3R_30839922_SNP [dm6]	T	C	3.120e^-4	0.884	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
3R	11296895	3R_11296895_SNP [dm3] 3R_15471173_SNP [dm6]	G	A	3.125e^-4	0.884	INTRON AdamTS-A
3L	18897932	3L_18897932_INS [dm3] 3L_18904832_INS [dm6]	A	AC	3.125e^-4	0.884	UTR_5_PRIME CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15210243	2L_15210243_SNP [dm3] 2L_15210243_SNP [dm6]	C	T	3.134e^-4	0.884	INTERGENIC
3R	15636652	3R_15636652_SNP [dm3] 3R_19810930_SNP [dm6]	A	G	3.148e^-4	0.884	INTRON bnl
3L	8644808	3L_8644808_SNP [dm3] 3L_8651708_SNP [dm6]	T	C	3.151e^-4	0.884	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	11280610	X_11280610_SNP [dm3] X_11386577_SNP [dm6]	T	A	3.154e^-4	0.884	INTRON dlg1
2R	17735831	2R_17735831_SNP [dm3] 2R_21848326_SNP [dm6]	A	G	3.158e^-4	0.884	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
2L	4156555	2L_4156555_SNP [dm3] 2L_4156555_SNP [dm6]	G	T	3.159e^-4	0.884	INTERGENIC
X	14218285	X_14218285_SNP [dm3] X_14324252_SNP [dm6]	G	A	3.160e^-4	0.884	INTRON dpr8
2L	3759080	2L_3759080_SNP [dm3] 2L_3759080_SNP [dm6]	T	C	3.160e^-4	0.884	SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 UPSTREAM CG43707
X	6518605	X_6518605_SNP [dm3] X_6624572_SNP [dm6]	G	A	3.162e^-4	0.884	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	16048468	2R_16048468_SNP [dm3] 2R_20160963_SNP [dm6]	G	A	3.168e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25979428	3R_25979428_SNP [dm3] 3R_30153706_SNP [dm6]	G	A	3.170e^-4	0.884	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3R	19475912	3R_19475912_SNP [dm3] 3R_23650190_SNP [dm6]	A	G	3.182e^-4	0.884	INTRON CG31145
X	3182227	X_3182227_SNP [dm3] X_3288194_SNP [dm6]	T	C	3.193e^-4	0.884	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18645090	2L_18645090_SNP [dm3] 2L_18645090_SNP [dm6]	A	T	3.202e^-4	0.884	INTRON MESR3
3L	3514937	3L_3514937_SNP [dm3] 3L_3514937_SNP [dm6]	A	G	3.203e^-4	0.884	UPSTREAM Eip63E INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	3.205e^-4	0.884	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17817546	X_17817546_SNP [dm3] X_17923513_SNP [dm6]	C	G	3.210e^-4	0.884	SYNONYMOUS_CODING CG6847 DOWNSTREAM Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	776516	3R_776516_SNP [dm3] 3R_4950794_SNP [dm6]	T	C	3.213e^-4	0.884	INTRON UbcD6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17944098	2R_17944098_SNP [dm3] 2R_22056593_SNP [dm6]	C	G	3.213e^-4	0.884	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad
2L	20203461	2L_20203461_SNP [dm3] 2L_20203461_SNP [dm6]	G	T	3.217e^-4	0.884	INTERGENIC	transposable element FlyBase
2R	17676842	2R_17676842_SNP [dm3] 2R_21789337_SNP [dm6]	A	T	3.225e^-4	0.884	DOWNSTREAM lox2 INTERGENIC
2R	17676852	2R_17676852_SNP [dm3] 2R_21789347_SNP [dm6]	T	A	3.225e^-4	0.884	DOWNSTREAM lox2 INTERGENIC
3R	14171846	3R_14171846_SNP [dm3] 3R_18346124_SNP [dm6]	G	A	3.230e^-4	0.884	INTRON CG15803
X	12251091	X_12251091_SNP [dm3] X_12357058_SNP [dm6]	T	A	3.233e^-4	0.884	INTERGENIC
2L	11913941	2L_11913941_SNP [dm3] 2L_11913941_SNP [dm6]	T	C	3.245e^-4	0.884	INTRON Pde1c
X	18157805	X_18157805_INS [dm3] X_18263772_INS [dm6]	T	TGTTCAGTT	3.255e^-4	0.884	INTERGENIC
3L	12222972	3L_12222972_DEL [dm3] 3L_12229872_DEL [dm6]	TT	T	3.261e^-4	0.884	INTRON app
2R	19691815	2R_19691815_SNP [dm3] 2R_23804292_SNP [dm6]	T	C	3.262e^-4	0.884	UPSTREAM CG5539 DOWNSTREAM CG13561 INTERGENIC
2R	6196416	2R_6196416_SNP [dm3] 2R_10308911_SNP [dm6]	G	T	3.269e^-4	0.884	SYNONYMOUS_CODING JhI-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	21734318	2L_21734318_INS [dm3] 2L_21734318_INS [dm6]	G	GG	3.273e^-4	0.884	INTERGENIC	transposable element FlyBase
3L	18903055	3L_18903055_SNP [dm3] 3L_18909955_SNP [dm6]	A	T	3.275e^-4	0.884	INTRON Ir75d & 1 other
2R	8169113	2R_8169113_DEL [dm3] 2R_12281608_DEL [dm6]	TACAATCAT	T	3.276e^-4	0.884	INTRON CG42700
4	126041	4_126041_SNP [dm3] 4_105415_SNP [dm6]	A	T	3.279e^-4	0.884	INTRON pan
3R	20427827	3R_20427827_SNP [dm3] 3R_24602105_SNP [dm6]	C	T	3.284e^-4	0.884	INTRON mld
X	21458630	X_21458630_SNP [dm3] X_21587603_SNP [dm6]	C	T	3.305e^-4	0.884	INTERGENIC	transposable element FlyBase
2R	14785063	2R_14785063_SNP [dm3] 2R_18897558_SNP [dm6]	C	G	3.306e^-4	0.884	INTRON sano
3L	4505772	3L_4505772_SNP [dm3] 3L_4505772_SNP [dm6]	G	A	3.308e^-4	0.884	SYNONYMOUS_CODING NT1
2R	14829638	2R_14829638_SNP [dm3] 2R_18942133_SNP [dm6]	G	T	3.311e^-4	0.884	INTRON sano
2L	13730689	2L_13730689_SNP [dm3] 2L_13730689_SNP [dm6]	C	T	3.316e^-4	0.884	INTERGENIC
2L	15014551	2L_15014551_SNP [dm3] 2L_15014551_SNP [dm6]	A	C	3.318e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	3.318e^-4	0.884	SYNONYMOUS_CODING plum
3R	694170	3R_694170_SNP [dm3] 3R_4868448_SNP [dm6]	T	C	3.322e^-4	0.884	INTRON opa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2R	16692397	2R_16692397_SNP [dm3] 2R_20804892_SNP [dm6]	T	C	3.327e^-4	0.884	INTERGENIC
3L	7549079	3L_7549079_SNP [dm3] 3L_7555979_SNP [dm6]	A	T	3.332e^-4	0.884	SYNONYMOUS_CODING CG14837
2L	20389944	2L_20389944_SNP [dm3] 2L_20389944_SNP [dm6]	A	T	3.336e^-4	0.884	INTRON CG10947	TF binding site mE1_TFBS_inv
3R	10502434	3R_10502434_SNP [dm3] 3R_14676712_SNP [dm6]	C	T	3.337e^-4	0.884	INTRON Meltrin
3R	1649287	3R_1649287_SNP [dm3] 3R_5823565_SNP [dm6]	G	A	3.354e^-4	0.884	UTR_3_PRIME CG2023	TF binding site mE1_TFBS_Trl
3R	14280247	3R_14280247_SNP [dm3] 3R_18454525_SNP [dm6]	G	A	3.358e^-4	0.884	INTRON fru
2L	15014619	2L_15014619_SNP [dm3] 2L_15014619_SNP [dm6]	C	A	3.359e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15649145	3R_15649145_SNP [dm3] 3R_19823423_SNP [dm6]	C	T	3.366e^-4	0.884	INTRON bnl
2R	5538037	2R_5538037_SNP [dm3] 2R_9650532_SNP [dm6]	C	A	3.369e^-4	0.884	INTRON Mmp2
2R	16774814	2R_16774814_SNP [dm3] 2R_20887309_SNP [dm6]	C	T	3.371e^-4	0.884	INTRON otp
3L	13408079	3L_13408079_SNP [dm3] 3L_13414979_SNP [dm6]	C	T	3.379e^-4	0.884	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20742994	2R_20742994_SNP [dm3] 2R_24855471_SNP [dm6]	C	A	3.384e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	21588227	3L_21588227_SNP [dm3] 3L_21595127_SNP [dm6]	G	A	3.385e^-4	0.884	INTRON TfAP-2 EXON CR43940	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	3.393e^-4	0.884	INTRON twi & 1 other
3L	16349980	3L_16349980_SNP [dm3] 3L_16356880_SNP [dm6]	C	T	3.397e^-4	0.884	UPSTREAM CG45057 INTRON CG45057
3R	8383557	3R_8383557_SNP [dm3] 3R_12557835_SNP [dm6]	A	T	3.402e^-4	0.884	INTRON Octbeta2R
3L	10443837	3L_10443837_DEL [dm3] 3L_10450737_DEL [dm6]	AGTCATTTTGGTAAATTACT...	A	3.408e^-4	0.884	INTERGENIC
3L	1962914	3L_1962914_SNP [dm3] 3L_1962914_SNP [dm6]	G	T	3.408e^-4	0.884	UTR_5_PRIME mv UPSTREAM SCOT
X	5258292	X_5258292_DEL [dm3] X_5364259_DEL [dm6]	GAGAGAG	G	3.414e^-4	0.884	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	3.416e^-4	0.884	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18021384	X_18021384_SNP [dm3] X_18127351_SNP [dm6]	G	A	3.418e^-4	0.884	UPSTREAM CG32553 & 1 other INTERGENIC
2R	15236121	2R_15236121_SNP [dm3] 2R_19348616_SNP [dm6]	G	A	3.418e^-4	0.884	INTRON Rgk1
3L	6721023	3L_6721023_SNP [dm3] 3L_6727923_SNP [dm6]	G	A	3.425e^-4	0.884	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11344131	2R_11344131_SNP [dm3] 2R_15456626_SNP [dm6]	G	A	3.426e^-4	0.884	INTRON CG43729	TF binding site mE1_TFBS_chinmo
2L	15024009	2L_15024009_SNP [dm3] 2L_15024009_SNP [dm6]	A	G	3.441e^-4	0.884	INTRON GABA-B-R1
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	3.441e^-4	0.884	SYNONYMOUS_CODING SP1173
2L	1637279	2L_1637279_SNP [dm3] 2L_1637279_SNP [dm6]	C	A	3.442e^-4	0.884	INTERGENIC
2L	6086972	2L_6086972_DEL [dm3] 2L_6086972_DEL [dm6]	CGTC	C	3.449e^-4	0.884	INTRON Kr-h1
X	6156823	X_6156823_SNP [dm3] X_6262790_SNP [dm6]	C	T	3.453e^-4	0.884	DOWNSTREAM CG3781 INTRON schlank
3L	19446198	3L_19446198_SNP [dm3] 3L_19453098_SNP [dm6]	G	T	3.455e^-4	0.884	INTERGENIC
2R	13435137	2R_13435137_SNP [dm3] 2R_17547632_SNP [dm6]	T	C	3.464e^-4	0.884	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15021678	2L_15021678_SNP [dm3] 2L_15021678_SNP [dm6]	A	G	3.464e^-4	0.884	INTRON GABA-B-R1
X	455460	X_455460_SNP [dm3] X_561427_SNP [dm6]	T	A	3.480e^-4	0.884	INTRON Appl
3R	7910388	3R_7910388_SNP [dm3] 3R_12084666_SNP [dm6]	A	G	3.481e^-4	0.884	INTRON CG14741
2L	11014710	2L_11014710_SNP [dm3] 2L_11014710_SNP [dm6]	T	C	3.481e^-4	0.884	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3R	22518295	3R_22518295_SNP [dm3] 3R_26692573_SNP [dm6]	G	C	3.485e^-4	0.884	UTR_3_PRIME TwdlQ	TF binding site mE1_TFBS_cad
X	21373381	X_21373381_SNP [dm3] X_21502354_SNP [dm6]	C	A	3.498e^-4	0.884	INTRON CR45082
3L	14717959	3L_14717959_SNP [dm3] 3L_14724859_SNP [dm6]	C	G	3.500e^-4	0.884	INTRON ome
X	8966947	X_8966947_SNP [dm3] X_9072914_SNP [dm6]	A	T	3.501e^-4	0.884	NON_SYNONYMOUS_CODING CG44325 INTRON CG44325
3R	19139955	3R_19139955_SNP [dm3] 3R_23314233_SNP [dm6]	G	A	3.503e^-4	0.884	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6511929	3L_6511929_SNP [dm3] 3L_6518829_SNP [dm6]	C	T	3.512e^-4	0.884	INTRON sfl
X	9802581	X_9802581_SNP [dm3] X_9908548_SNP [dm6]	G	T	3.518e^-4	0.884	DOWNSTREAM CG1986 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15850077	3R_15850077_SNP [dm3] 3R_20024355_SNP [dm6]	G	A	3.522e^-4	0.884	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2L	7937252	2L_7937252_SNP [dm3] 2L_7937252_SNP [dm6]	A	T	3.524e^-4	0.884	INTRON Snoo
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	3.529e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	10447044	X_10447044_DEL [dm3] X_10553011_DEL [dm6]	GTT	A	3.530e^-4	0.884	INTRON spri
3R	14928083	3R_14928083_SNP [dm3] 3R_19102361_SNP [dm6]	A	T	3.543e^-4	0.884	INTRON CG6040
X	6518623	X_6518623_SNP [dm3] X_6624590_SNP [dm6]	T	C	3.543e^-4	0.884	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3256518	X_3256518_INS [dm3] X_3362485_INS [dm6]	G	GTGG	3.544e^-4	0.884	INTERGENIC
X	20464271	X_20464271_SNP [dm3] X_20593244_SNP [dm6]	T	A	3.545e^-4	0.884	INTRON RunxA
X	5258167	X_5258167_SNP [dm3] X_5364134_SNP [dm6]	A	T	3.551e^-4	0.884	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24552781	3R_24552781_INS [dm3] 3R_28727059_INS [dm6]	A	ATGCGTCAAA	3.554e^-4	0.884	INTRON htt	TF binding site mE1_TFBS_chinmo
2L	2668208	2L_2668208_SNP [dm3] 2L_2668208_SNP [dm6]	T	A	3.565e^-4	0.884	INTERGENIC
2L	6629279	2L_6629279_SNP [dm3] 2L_6629279_SNP [dm6]	C	A	3.566e^-4	0.884	INTRON Oatp26F
X	13494427	X_13494427_SNP [dm3] X_13600394_SNP [dm6]	C	T	3.578e^-4	0.884	UPSTREAM up INTRON up
3L	4487401	3L_4487401_SNP [dm3] 3L_4487401_SNP [dm6]	G	T	3.580e^-4	0.884	SYNONYMOUS_CODING CG13722
3L	14475389	3L_14475389_SNP [dm3] 3L_14482289_SNP [dm6]	T	G	3.585e^-4	0.884	INTRON bbg
2L	11014865	2L_11014865_SNP [dm3] 2L_11014865_SNP [dm6]	T	A	3.587e^-4	0.884	UPSTREAM Acp32CD INTRON Samuel
2R	19082945	2R_19082945_SNP [dm3] 2R_23195422_SNP [dm6]	C	G	3.593e^-4	0.884	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3758695	2L_3758695_SNP [dm3] 2L_3758695_SNP [dm6]	C	T	3.602e^-4	0.884	INTRON CG43707
X	13470395	X_13470395_SNP [dm3] X_13576362_SNP [dm6]	A	C	3.606e^-4	0.884	UTR_5_PRIME Tango13 INTRON Tango13
3L	12235597	3L_12235597_SNP [dm3] 3L_12242497_SNP [dm6]	C	A	3.612e^-4	0.884	INTRON app
2L	8685939	2L_8685939_SNP [dm3] 2L_8685939_SNP [dm6]	G	A	3.613e^-4	0.884	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	3.618e^-4	0.884	INTRON CG10663
3L	4288941	3L_4288941_SNP [dm3] 3L_4288941_SNP [dm6]	C	A	3.622e^-4	0.884	UTR_5_PRIME Hexo1 UPSTREAM Hexo1 DOWNSTREAM TfIIEbeta INTRON Hexo1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24469790	3R_24469790_SNP [dm3] 3R_28644068_SNP [dm6]	A	G	3.628e^-4	0.884	INTERGENIC
2L	2100352	2L_2100352_DEL [dm3] 2L_2100352_DEL [dm6]	TGTTATCT	T	3.631e^-4	0.884	INTRON dpr3
3L	12061769	3L_12061769_SNP [dm3] 3L_12068669_SNP [dm6]	C	G	3.636e^-4	0.884	INTRON Sema-5c
X	11925493	X_11925493_SNP [dm3] X_12031460_SNP [dm6]	C	T	3.650e^-4	0.884	UTR_5_PRIME Cyp311a1
2R	8144551	2R_8144551_SNP [dm3] 2R_12257046_SNP [dm6]	A	G	3.652e^-4	0.884	UPSTREAM Vha36-2 INTERGENIC
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	3.654e^-4	0.884	INTERGENIC
X	16615953	X_16615953_SNP [dm3] X_16721920_SNP [dm6]	A	C	3.667e^-4	0.884	UPSTREAM CG34325 INTRON CG32572
3R	10410551	3R_10410551_SNP [dm3] 3R_14584829_SNP [dm6]	A	G	3.669e^-4	0.884	INTRON stumps
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	3.672e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	20202778	2R_20202778_SNP [dm3] 2R_24315255_SNP [dm6]	G	A	3.676e^-4	0.884	INTERGENIC
3R	14444109	3R_14444109_SNP [dm3] 3R_18618387_SNP [dm6]	C	T	3.695e^-4	0.884	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15121847	X_15121847_SNP [dm3] X_15227814_SNP [dm6]	A	G	3.696e^-4	0.884	DOWNSTREAM CG9101 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11952223	2L_11952223_SNP [dm3] 2L_11952223_SNP [dm6]	C	T	3.700e^-4	0.884	EXON CR43314
3L	14718390	3L_14718390_SNP [dm3] 3L_14725290_SNP [dm6]	G	A	3.707e^-4	0.884	INTRON ome
X	15997076	X_15997076_INS [dm3] X_16103043_INS [dm6]	T	TT	3.717e^-4	0.884	UTR_5_PRIME CG42353 & 1 other INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	19139867	3R_19139867_SNP [dm3] 3R_23314145_SNP [dm6]	C	A	3.727e^-4	0.884	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23653741	3R_23653741_SNP [dm3] 3R_27828019_SNP [dm6]	A	G	3.748e^-4	0.884	INTRON CG34353
2L	8122188	2L_8122188_SNP [dm3] 2L_8122188_SNP [dm6]	G	A	3.750e^-4	0.884	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_cad
X	5405601	X_5405601_SNP [dm3] X_5511568_SNP [dm6]	T	C	3.753e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3R	17935417	3R_17935417_SNP [dm3] 3R_22109695_SNP [dm6]	T	C	3.754e^-4	0.884	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	3.758e^-4	0.884	INTERGENIC
4	165631	4_165631_SNP [dm3] 4_145005_SNP [dm6]	A	T	3.769e^-4	0.884	INTERGENIC	transposable element FlyBase
3R	14907249	3R_14907249_SNP [dm3] 3R_19081527_SNP [dm6]	C	T	3.770e^-4	0.884	INTRON cdi
3R	14907313	3R_14907313_SNP [dm3] 3R_19081591_SNP [dm6]	A	G	3.770e^-4	0.884	INTRON cdi
3R	25094570	3R_25094570_SNP [dm3] 3R_29268848_SNP [dm6]	C	A	3.770e^-4	0.884	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	2198284	3L_2198284_SNP [dm3] 3L_2198284_SNP [dm6]	G	A	3.771e^-4	0.884	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2198306	3L_2198306_SNP [dm3] 3L_2198306_SNP [dm6]	G	A	3.771e^-4	0.884	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26429841	3R_26429841_SNP [dm3] 3R_30604119_SNP [dm6]	T	A	3.778e^-4	0.884	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
2L	5249175	2L_5249175_SNP [dm3] 2L_5249175_SNP [dm6]	A	T	3.781e^-4	0.884	INTRON tkv	TF binding site mE1_TFBS_cnc
3R	10996102	3R_10996102_SNP [dm3] 3R_15170380_SNP [dm6]	A	G	3.783e^-4	0.884	DOWNSTREAM Mf INTRON Gyc88E
3R	23235878	3R_23235878_SNP [dm3] 3R_27410156_SNP [dm6]	C	T	3.784e^-4	0.884	INTRON side
2L	15504331	2L_15504331_SNP [dm3] 2L_15504331_SNP [dm6]	C	T	3.792e^-4	0.884	UTR_3_PRIME lace
2R	20391843	2R_20391843_SNP [dm3] 2R_24504320_SNP [dm6]	G	C	3.795e^-4	0.884	INTERGENIC
X	14862118	X_14862118_SNP [dm3] X_14968085_SNP [dm6]	A	T	3.800e^-4	0.884	INTRON eag
X	14862460	X_14862460_SNP [dm3] X_14968427_SNP [dm6]	A	G	3.800e^-4	0.884	INTRON eag
2L	9158571	2L_9158571_SNP [dm3] 2L_9158571_SNP [dm6]	G	A	3.808e^-4	0.884	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20213789	2L_20213789_SNP [dm3] 2L_20213789_SNP [dm6]	A	C	3.812e^-4	0.884	INTERGENIC	transposable element FlyBase
3R	15322278	3R_15322278_SNP [dm3] 3R_19496556_SNP [dm6]	G	C	3.813e^-4	0.884	INTRON Dys
3L	4728320	3L_4728320_INS [dm3] 3L_4728320_INS [dm6]	A	ATA	3.827e^-4	0.884	INTRON RhoGEF64C
3L	2245527	3L_2245527_SNP [dm3] 3L_2245527_SNP [dm6]	G	A	3.828e^-4	0.884	SYNONYMOUS_CODING CG32301	TF binding site mE1_TFBS_cad
3R	5154856	3R_5154856_SNP [dm3] 3R_9329134_SNP [dm6]	T	C	3.839e^-4	0.884	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	6177638	2R_6177638_SNP [dm3] 2R_10290133_SNP [dm6]	C	G	3.844e^-4	0.884	UPSTREAM CAP INTRON CAP
3R	8383564	3R_8383564_SNP [dm3] 3R_12557842_SNP [dm6]	A	T	3.853e^-4	0.884	INTRON Octbeta2R
2L	19547620	2L_19547620_SNP [dm3] 2L_19547620_SNP [dm6]	C	T	3.861e^-4	0.884	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17935439	3R_17935439_DEL [dm3] 3R_22109717_DEL [dm6]	CGAAATTGCTGT...	C	3.868e^-4	0.884	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25189425	3R_25189425_SNP [dm3] 3R_29363703_SNP [dm6]	C	G	3.868e^-4	0.884	INTERGENIC
3R	10779056	3R_10779056_SNP [dm3] 3R_14953334_SNP [dm6]	A	G	3.876e^-4	0.884	INTERGENIC
3R	22175880	3R_22175880_SNP [dm3] 3R_26350158_SNP [dm6]	T	C	3.876e^-4	0.884	SYNONYMOUS_CODING CG33970
3R	21457084	3R_21457084_SNP [dm3] 3R_25631362_SNP [dm6]	A	G	3.880e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14907300	3R_14907300_SNP [dm3] 3R_19081578_SNP [dm6]	A	C	3.883e^-4	0.884	INTRON cdi
2L	13418224	2L_13418224_SNP [dm3] 2L_13418224_SNP [dm6]	A	G	3.889e^-4	0.884	UPSTREAM CG43850 INTRON CG43850 & 1 other
3R	17755460	3R_17755460_SNP [dm3] 3R_21929738_SNP [dm6]	A	T	3.890e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	18681003	2R_18681003_SNP [dm3] 2R_22793498_SNP [dm6]	G	A	3.893e^-4	0.884	INTRON CG42260
3R	7910358	3R_7910358_DEL [dm3] 3R_12084636_DEL [dm6]	TGAATCAGTTTAATAAA...	G	3.893e^-4	0.884	INTRON CG14741
X	4081883	X_4081883_SNP [dm3] X_4187850_SNP [dm6]	C	T	3.897e^-4	0.884	INTRON Fas2
3R	23227282	3R_23227282_SNP [dm3] 3R_27401560_SNP [dm6]	C	A	3.899e^-4	0.884	INTRON side
3L	4487336	3L_4487336_SNP [dm3] 3L_4487336_SNP [dm6]	A	G	3.905e^-4	0.884	NON_SYNONYMOUS_CODING CG13722
2L	15584788	2L_15584788_SNP [dm3] 2L_15584788_SNP [dm6]	T	A	3.907e^-4	0.884	DOWNSTREAM kek3 INTERGENIC
2L	3631294	2L_3631294_SNP [dm3] 2L_3631294_SNP [dm6]	T	A	3.917e^-4	0.884	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14907243	3R_14907243_SNP [dm3] 3R_19081521_SNP [dm6]	T	C	3.921e^-4	0.884	INTRON cdi
3R	21461965	3R_21461965_SNP [dm3] 3R_25636243_SNP [dm6]	C	T	3.928e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	20630519	2R_20630519_SNP [dm3] 2R_24742996_SNP [dm6]	G	A	3.929e^-4	0.884	UPSTREAM CG30421 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16615330	2R_16615330_SNP [dm3] 2R_20727825_SNP [dm6]	C	T	3.941e^-4	0.884	DOWNSTREAM CG13442 INTRON dpr	TF binding site mE1_TFBS_chinmo
3L	2299972	3L_2299972_SNP [dm3] 3L_2299972_SNP [dm6]	T	C	3.946e^-4	0.884	SYNONYMOUS_CODING MsR2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7320584	2R_7320584_SNP [dm3] 2R_11433079_SNP [dm6]	T	A	3.969e^-4	0.884	EXON CR43771
3R	14907299	3R_14907299_SNP [dm3] 3R_19081577_SNP [dm6]	G	T	3.969e^-4	0.884	INTRON cdi
X	11232488	X_11232488_SNP [dm3] X_11338455_SNP [dm6]	A	C	3.971e^-4	0.884	INTRON Kap3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3R	27474451	3R_27474451_SNP [dm3] 3R_31648729_SNP [dm6]	A	T	3.986e^-4	0.884	INTRON kek6
3R	13590950	3R_13590950_SNP [dm3] 3R_17765228_SNP [dm6]	A	C	3.986e^-4	0.884	INTERGENIC
X	11255236	X_11255236_SNP [dm3] X_11361203_SNP [dm6]	A	G	3.991e^-4	0.884	UTR_3_PRIME hop DOWNSTREAM Pa1
3L	20911191	3L_20911191_SNP [dm3] 3L_20918091_SNP [dm6]	A	G	3.994e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	18877963	X_18877963_SNP [dm3] X_18983930_SNP [dm6]	C	T	3.999e^-4	0.884	INTRON CG43759
3R	3401683	3R_3401683_DEL [dm3] 3R_7575961_DEL [dm6]	AGCA	A	4.000e^-4	0.884	INTRON CG34127
2L	3758964	2L_3758964_SNP [dm3] 2L_3758964_SNP [dm6]	T	A	4.008e^-4	0.884	INTRON CG43707
2L	20146736	2L_20146736_SNP [dm3] 2L_20146736_SNP [dm6]	A	G	4.012e^-4	0.884	INTERGENIC
2L	11014762	2L_11014762_SNP [dm3] 2L_11014762_SNP [dm6]	A	G	4.014e^-4	0.884	UPSTREAM Acp32CD INTRON Samuel	TF binding site mE1_TFBS_cad
3L	12452367	3L_12452367_SNP [dm3] 3L_12459267_SNP [dm6]	C	T	4.025e^-4	0.884	INTERGENIC
3R	17750276	3R_17750276_SNP [dm3] 3R_21924554_SNP [dm6]	C	T	4.026e^-4	0.884	INTERGENIC
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	4.032e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	6508200	3L_6508200_SNP [dm3] 3L_6515100_SNP [dm6]	C	G	4.038e^-4	0.884	INTRON sfl
2R	19187738	2R_19187738_DEL [dm3] 2R_23300215_DEL [dm6]	AGTA	A	4.046e^-4	0.884	INTERGENIC
3L	9519575	3L_9519575_INS [dm3] 3L_9526475_INS [dm6]	A	ACA	4.047e^-4	0.884	UPSTREAM CG33700 INTERGENIC
X	3850982	X_3850982_SNP [dm3] X_3956949_SNP [dm6]	C	T	4.056e^-4	0.884	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	11777204	2R_11777204_SNP [dm3] 2R_15889699_SNP [dm6]	C	T	4.063e^-4	0.884	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	20205383	2R_20205383_SNP [dm3] 2R_24317860_SNP [dm6]	C	T	4.067e^-4	0.884	INTERGENIC
X	8138519	X_8138519_SNP [dm3] X_8244486_SNP [dm6]	C	T	4.073e^-4	0.884	NON_SYNONYMOUS_CODING Trxr-1 UPSTREAM sni INTRON Trxr-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	5921327	3R_5921327_INS [dm3] 3R_10095605_INS [dm6]	C	CTTAAAGT	4.077e^-4	0.884	DOWNSTREAM CR43459 EXON CR43459
X	21382085	X_21382085_SNP [dm3] X_21511058_SNP [dm6]	T	C	4.085e^-4	0.884	INTRON CR45082
2R	19192903	2R_19192903_SNP [dm3] 2R_23305380_SNP [dm6]	G	A	4.088e^-4	0.884	INTERGENIC
3R	667961	3R_667961_SNP [dm3] 3R_4842239_SNP [dm6]	C	T	4.089e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12736367	2R_12736367_DEL [dm3] 2R_16848862_DEL [dm6]	TT	T	4.097e^-4	0.884	UPSTREAM CR44467 INTERGENIC
2R	10569137	2R_10569137_SNP [dm3] 2R_14681632_SNP [dm6]	A	G	4.112e^-4	0.884	INTRON mspo
2R	17720999	2R_17720999_SNP [dm3] 2R_21833494_SNP [dm6]	T	A	4.126e^-4	0.884	NON_SYNONYMOUS_CODING CG34040 DOWNSTREAM CG4363
3L	18611747	3L_18611747_SNP [dm3] 3L_18618647_SNP [dm6]	A	C	4.133e^-4	0.884	UTR_3_PRIME not UPSTREAM CG13380 & 1 other DOWNSTREAM not & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	14695368	3R_14695368_INS [dm3] 3R_18869646_INS [dm6]	T	GCA	4.135e^-4	0.884	INTERGENIC
3R	14695407	3R_14695407_SNP [dm3] 3R_18869685_SNP [dm6]	G	A	4.135e^-4	0.884	INTERGENIC
X	21374489	X_21374489_SNP [dm3] X_21503462_SNP [dm6]	A	T	4.139e^-4	0.884	INTRON CR45082
2L	9824182	2L_9824182_SNP [dm3] 2L_9824182_SNP [dm6]	C	T	4.140e^-4	0.884	INTRON nAChRalpha6
X	4860275	X_4860275_SNP [dm3] X_4966242_SNP [dm6]	T	G	4.146e^-4	0.884	INTRON CR44833	regulatory region REDfly_CRMs
4	213985	4_213985_SNP [dm3] 4_193359_SNP [dm6]	T	G	4.147e^-4	0.884	UTR_5_PRIME CG2316 INTRON CG2316	TF binding site BDTNP1_TFBS_dl
X	16615946	X_16615946_SNP [dm3] X_16721913_SNP [dm6]	T	C	4.150e^-4	0.884	UPSTREAM CG34325 INTRON CG32572
3L	14712874	3L_14712874_SNP [dm3] 3L_14719774_SNP [dm6]	T	C	4.152e^-4	0.884	INTRON ome
3L	18269216	3L_18269216_SNP [dm3] 3L_18276116_SNP [dm6]	T	C	4.153e^-4	0.884	INTERGENIC
2R	17676040	2R_17676040_SNP [dm3] 2R_21788535_SNP [dm6]	G	C	4.164e^-4	0.884	INTERGENIC
2R	16948441	2R_16948441_SNP [dm3] 2R_21060936_SNP [dm6]	C	T	4.170e^-4	0.884	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8144552	2R_8144552_SNP [dm3] 2R_12257047_SNP [dm6]	C	A	4.183e^-4	0.884	UPSTREAM Vha36-2 INTERGENIC
3L	8588589	3L_8588589_SNP [dm3] 3L_8595489_SNP [dm6]	T	A	4.184e^-4	0.884	INTRON CG43078	TF binding site mE1_TFBS_chinmo
X	459814	X_459814_SNP [dm3] X_565781_SNP [dm6]	T	C	4.186e^-4	0.884	INTRON Appl
2R	10371713	2R_10371713_INS [dm3] 2R_14484208_INS [dm6]	T	TGTAT	4.186e^-4	0.884	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17239246	X_17239246_SNP [dm3] X_17345213_SNP [dm6]	A	G	4.188e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17605250	2R_17605250_SNP [dm3] 2R_21717745_SNP [dm6]	G	C	4.197e^-4	0.884	UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20224734	2L_20224734_SNP [dm3] 2L_20224734_SNP [dm6]	A	T	4.203e^-4	0.884	INTERGENIC
2R	11849218	2R_11849218_SNP [dm3] 2R_15961713_SNP [dm6]	A	T	4.209e^-4	0.884	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5519196	3L_5519196_SNP [dm3] 3L_5526096_SNP [dm6]	A	G	4.215e^-4	0.884	INTRON Lkr
2L	15056723	2L_15056723_SNP [dm3] 2L_15056723_SNP [dm6]	T	C	4.224e^-4	0.884	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2R	9599822	2R_9599822_INS [dm3] 2R_13712317_INS [dm6]	A	AGTAGACCGTGG...	4.230e^-4	0.884	INTRON fas	TF binding site mE1_TFBS_HSA
X	15209166	X_15209166_SNP [dm3] X_15315133_SNP [dm6]	C	T	4.232e^-4	0.884	SYNONYMOUS_CODING gce EXON CR44961	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	17943968	2R_17943968_SNP [dm3] 2R_22056463_SNP [dm6]	A	G	4.237e^-4	0.884	DOWNSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
2R	20380032	2R_20380032_SNP [dm3] 2R_24492509_SNP [dm6]	A	G	4.243e^-4	0.884	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
X	5847264	X_5847264_SNP [dm3] X_5953231_SNP [dm6]	G	T	4.250e^-4	0.884	NON_SYNONYMOUS_CODING CG6048
2L	6397567	2L_6397567_SNP [dm3] 2L_6397567_SNP [dm6]	T	A	4.260e^-4	0.884	UPSTREAM CG42369 INTRON CG42368
3L	16146738	3L_16146738_SNP [dm3] 3L_16153638_SNP [dm6]	T	G	4.263e^-4	0.884	INTRON CG5151
3R	26665555	3R_26665555_SNP [dm3] 3R_30839833_SNP [dm6]	T	G	4.265e^-4	0.884	NON_SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad
3R	9869036	3R_9869036_SNP [dm3] 3R_14043314_SNP [dm6]	T	G	4.270e^-4	0.884	INTERGENIC
3L	12177353	3L_12177353_SNP [dm3] 3L_12184253_SNP [dm6]	G	T	4.271e^-4	0.884	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
2R	6790426	2R_6790426_SNP [dm3] 2R_10902921_SNP [dm6]	C	G	4.271e^-4	0.884	UPSTREAM CG12943 INTERGENIC
2R	10586965	2R_10586965_SNP [dm3] 2R_14699460_SNP [dm6]	A	C	4.272e^-4	0.884	INTRON mspo
3L	17933777	3L_17933777_SNP [dm3] 3L_17940677_SNP [dm6]	A	G	4.280e^-4	0.884	INTRON CG43174
3R	8549755	3R_8549755_INS [dm3] 3R_12724033_INS [dm6]	A	AA	4.284e^-4	0.884	INTERGENIC
3R	24213262	3R_24213262_SNP [dm3] 3R_28387540_SNP [dm6]	G	A	4.285e^-4	0.884	INTERGENIC
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	4.286e^-4	0.884	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	4.286e^-4	0.884	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	4.286e^-4	0.884	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4156572	2L_4156572_SNP [dm3] 2L_4156572_SNP [dm6]	T	G	4.290e^-4	0.884	INTERGENIC
X	8068491	X_8068491_SNP [dm3] X_8174458_SNP [dm6]	C	T	4.295e^-4	0.884	INTRON slpr
2R	10863807	2R_10863807_SNP [dm3] 2R_14976302_SNP [dm6]	A	G	4.295e^-4	0.884	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20747106	2R_20747106_SNP [dm3] 2R_24859583_SNP [dm6]	G	A	4.298e^-4	0.884	EXON CR44829
3R	19536461	3R_19536461_SNP [dm3] 3R_23710739_SNP [dm6]	T	C	4.308e^-4	0.884	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
3L	2323021	3L_2323021_SNP [dm3] 3L_2323021_SNP [dm6]	T	C	4.314e^-4	0.884	INTRON MsR1
2L	8444574	2L_8444574_SNP [dm3] 2L_8444574_SNP [dm6]	T	G	4.314e^-4	0.884	SYNONYMOUS_CODING CG31897
2R	16997214	2R_16997214_SNP [dm3] 2R_21109709_SNP [dm6]	A	T	4.317e^-4	0.884	INTRON ktub
2R	20357891	2R_20357891_SNP [dm3] 2R_24470368_SNP [dm6]	G	T	4.318e^-4	0.884	INTRON CG13579
2R	19481793	2R_19481793_SNP [dm3] 2R_23594270_SNP [dm6]	A	G	4.319e^-4	0.884	INTRON apt	TF binding site mE1_TFBS_sens
4	244015	4_244015_SNP [dm3] 4_223389_SNP [dm6]	G	A	4.321e^-4	0.884	INTRON CG31999
3R	26455068	3R_26455068_SNP [dm3] 3R_30629346_SNP [dm6]	C	T	4.321e^-4	0.884	UPSTREAM CG2267 INTERGENIC
X	15999613	X_15999613_SNP [dm3] X_16105580_SNP [dm6]	A	C	4.327e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	7894802	3R_7894802_SNP [dm3] 3R_12069080_SNP [dm6]	C	T	4.346e^-4	0.884	UTR_3_PRIME CG14741
2R	9509713	2R_9509713_SNP [dm3] 2R_13622208_SNP [dm6]	A	T	4.347e^-4	0.884	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	17144372	2R_17144372_SNP [dm3] 2R_21256867_SNP [dm6]	C	T	4.350e^-4	0.884	INTRON Rgk3
X	15999934	X_15999934_INS [dm3] X_16105901_INS [dm6]	C	CT	4.353e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	9170539	X_9170539_SNP [dm3] X_9276506_SNP [dm6]	A	G	4.356e^-4	0.884	SYNONYMOUS_CODING c11.1 DOWNSTREAM CG16892	TF binding site mE1_TFBS_chinmo
2L	7146156	2L_7146156_SNP [dm3] 2L_7146156_SNP [dm6]	A	C	4.371e^-4	0.884	DOWNSTREAM CR44612 INTRON Pvf3
3L	12235589	3L_12235589_SNP [dm3] 3L_12242489_SNP [dm6]	T	G	4.374e^-4	0.884	INTRON app
3L	4487881	3L_4487881_SNP [dm3] 3L_4487881_SNP [dm6]	A	C	4.378e^-4	0.884	INTRON CG13722
X	9497941	X_9497941_SNP [dm3] X_9603908_SNP [dm6]	A	G	4.380e^-4	0.884	SYNONYMOUS_CODING Gga DOWNSTREAM Lst8
3R	5195462	3R_5195462_SNP [dm3] 3R_9369740_SNP [dm6]	A	G	4.380e^-4	0.884	INTRON FER
3L	4352256	3L_4352256_INS [dm3] 3L_4352256_INS [dm6]	T	TT	4.383e^-4	0.884	INTRON Cip4
3L	4352259	3L_4352259_SNP [dm3] 3L_4352259_SNP [dm6]	T	C	4.383e^-4	0.884	INTRON Cip4
2L	8679212	2L_8679212_INS [dm3] 2L_8679212_INS [dm6]	T	TT	4.384e^-4	0.884	DOWNSTREAM tRNA:CR31889 INTRON CG9287
3L	18270768	3L_18270768_SNP [dm3] 3L_18277668_SNP [dm6]	G	C	4.385e^-4	0.884	INTERGENIC
X	21457457	X_21457457_SNP [dm3] X_21586430_SNP [dm6]	C	A	4.386e^-4	0.884	INTERGENIC
3L	12330274	3L_12330274_SNP [dm3] 3L_12337174_SNP [dm6]	A	T	4.386e^-4	0.884	UTR_3_PRIME CG10418 UPSTREAM CR45444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19139595	3R_19139595_SNP [dm3] 3R_23313873_SNP [dm6]	G	A	4.389e^-4	0.884	UTR_5_PRIME pnt INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2787340	2L_2787340_DEL [dm3] 2L_2787340_DEL [dm6]	TT	T	4.396e^-4	0.884	INTRON Syt1
3R	11606835	3R_11606835_SNP [dm3] 3R_15781113_SNP [dm6]	A	G	4.398e^-4	0.884	DOWNSTREAM CG5614 INTERGENIC
3R	24195972	3R_24195972_SNP [dm3] 3R_28370250_SNP [dm6]	G	A	4.400e^-4	0.884	INTERGENIC
2L	16864202	2L_16864202_SNP [dm3] 2L_16864202_SNP [dm6]	A	G	4.405e^-4	0.884	INTERGENIC
2L	20224377	2L_20224377_SNP [dm3] 2L_20224377_SNP [dm6]	G	T	4.406e^-4	0.884	INTERGENIC
3R	10410451	3R_10410451_SNP [dm3] 3R_14584729_SNP [dm6]	C	T	4.409e^-4	0.884	INTRON stumps
2L	3758968	2L_3758968_SNP [dm3] 2L_3758968_SNP [dm6]	A	G	4.421e^-4	0.884	INTRON CG43707
2R	18682144	2R_18682144_SNP [dm3] 2R_22794639_SNP [dm6]	G	A	4.423e^-4	0.884	INTRON CG42260
3L	12153105	3L_12153105_SNP [dm3] 3L_12160005_SNP [dm6]	A	T	4.431e^-4	0.884	INTRON CG9760
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	4.438e^-4	0.884	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2L	8685938	2L_8685938_SNP [dm3] 2L_8685938_SNP [dm6]	C	A	4.445e^-4	0.884	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5725583	2L_5725583_SNP [dm3] 2L_5725583_SNP [dm6]	C	T	4.445e^-4	0.884	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4488389	3L_4488389_SNP [dm3] 3L_4488389_SNP [dm6]	G	C	4.449e^-4	0.884	INTRON CG13722
3L	9808604	3L_9808604_SNP [dm3] 3L_9815504_SNP [dm6]	T	G	4.449e^-4	0.884	UPSTREAM CG43897 INTRON CG43897
2L	20207441	2L_20207441_SNP [dm3] 2L_20207441_SNP [dm6]	A	C	4.449e^-4	0.884	INTERGENIC	transposable element FlyBase
2L	19547607	2L_19547607_SNP [dm3] 2L_19547607_SNP [dm6]	C	A	4.452e^-4	0.884	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6734285	X_6734285_SNP [dm3] X_6840252_SNP [dm6]	A	T	4.454e^-4	0.884	UTR_3_PRIME CG14435
2R	17676045	2R_17676045_SNP [dm3] 2R_21788540_SNP [dm6]	A	C	4.460e^-4	0.884	INTERGENIC
3R	15824167	3R_15824167_SNP [dm3] 3R_19998445_SNP [dm6]	G	A	4.474e^-4	0.884	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20295602	2L_20295602_SNP [dm3] 2L_20295602_SNP [dm6]	T	C	4.482e^-4	0.884	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	4.484e^-4	0.884	INTRON pgant2
3L	18903048	3L_18903048_SNP [dm3] 3L_18909948_SNP [dm6]	T	C	4.489e^-4	0.884	INTRON Ir75d & 1 other
2L	10266205	2L_10266205_SNP [dm3] 2L_10266205_SNP [dm6]	A	T	4.490e^-4	0.884	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953 DOWNSTREAM CG18619
2L	8331757	2L_8331757_SNP [dm3] 2L_8331757_SNP [dm6]	C	T	4.492e^-4	0.884	INTRON CG14275
3L	10968193	3L_10968193_SNP [dm3] 3L_10975093_SNP [dm6]	G	T	4.492e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	4.493e^-4	0.884	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
2L	20379387	2L_20379387_SNP [dm3] 2L_20379387_SNP [dm6]	G	A	4.498e^-4	0.884	SYNONYMOUS_CODING CG16798
X	14864075	X_14864075_SNP [dm3] X_14970042_SNP [dm6]	A	T	4.500e^-4	0.884	INTRON eag
2R	7444795	2R_7444795_SNP [dm3] 2R_11557290_SNP [dm6]	G	C	4.515e^-4	0.884	INTERGENIC
3R	17755476	3R_17755476_SNP [dm3] 3R_21929754_SNP [dm6]	A	T	4.524e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	3742813	2L_3742813_SNP [dm3] 2L_3742813_SNP [dm6]	C	A	4.528e^-4	0.884	INTRON CG10019
X	7906364	X_7906364_SNP [dm3] X_8012331_SNP [dm6]	A	T	4.528e^-4	0.884	INTRON Tbh
3R	19072313	3R_19072313_SNP [dm3] 3R_23246591_SNP [dm6]	A	T	4.529e^-4	0.884	INTRON CG4467
3L	6511493	3L_6511493_SNP [dm3] 3L_6518393_SNP [dm6]	G	C	4.535e^-4	0.884	INTRON sfl
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	4.536e^-4	0.884	UPSTREAM Mlp60A INTERGENIC
3R	24334197	3R_24334197_SNP [dm3] 3R_28508475_SNP [dm6]	G	A	4.537e^-4	0.884	INTRON Dhc98D	TF binding site mE1_TFBS_chinmo
3L	6500407	3L_6500407_SNP [dm3] 3L_6507307_SNP [dm6]	C	G	4.547e^-4	0.884	INTRON sfl
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	4.549e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	12555354	3R_12555354_SNP [dm3] 3R_16729632_SNP [dm6]	G	A	4.570e^-4	0.884	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	2841829	X_2841829_SNP [dm3] X_2947796_SNP [dm6]	C	T	4.587e^-4	0.884	UPSTREAM CG3603 DOWNSTREAM CG17959 INTRON kirre
3R	9866975	3R_9866975_SNP [dm3] 3R_14041253_SNP [dm6]	G	A	4.596e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12045122	3L_12045122_SNP [dm3] 3L_12052022_SNP [dm6]	T	G	4.602e^-4	0.884	INTRON rols
3R	13463728	3R_13463728_SNP [dm3] 3R_17638006_SNP [dm6]	C	A	4.604e^-4	0.884	UPSTREAM CR45222 INTRON CG43175
2R	17964925	2R_17964925_SNP [dm3] 2R_22077420_SNP [dm6]	A	G	4.610e^-4	0.884	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24100312	3R_24100312_SNP [dm3] 3R_28274590_SNP [dm6]	T	C	4.624e^-4	0.884	INTERGENIC
3L	13982151	3L_13982151_SNP [dm3] 3L_13989051_SNP [dm6]	G	A	4.625e^-4	0.884	DOWNSTREAM CG9040 INTRON CG17364
3L	11146008	3L_11146008_SNP [dm3] 3L_11152908_SNP [dm6]	G	A	4.634e^-4	0.884	INTRON CG32082
2L	2515452	2L_2515452_SNP [dm3] 2L_2515452_SNP [dm6]	A	T	4.637e^-4	0.884	INTERGENIC
3R	15636997	3R_15636997_SNP [dm3] 3R_19811275_SNP [dm6]	T	C	4.641e^-4	0.884	INTRON bnl
3L	12164188	3L_12164188_SNP [dm3] 3L_12171088_SNP [dm6]	T	G	4.649e^-4	0.884	INTRON Rh7
3R	27296154	3R_27296154_SNP [dm3] 3R_31470432_SNP [dm6]	T	A	4.654e^-4	0.884	DOWNSTREAM CR45554 INTERGENIC
3R	16772518	3R_16772518_SNP [dm3] 3R_20946796_SNP [dm6]	C	T	4.657e^-4	0.884	INTERGENIC
2L	16213092	2L_16213092_SNP [dm3] 2L_16213092_SNP [dm6]	A	G	4.675e^-4	0.884	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
2L	13961300	2L_13961300_SNP [dm3] 2L_13961300_SNP [dm6]	T	C	4.681e^-4	0.884	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13064376	X_13064376_SNP [dm3] X_13170343_SNP [dm6]	A	T	4.682e^-4	0.884	SPLICE_SITE_REGION CG34411 INTRON CG34411
2R	13431905	2R_13431905_INS [dm3] 2R_17544400_INS [dm6]	C	CGGACAC	4.698e^-4	0.884	UTR_5_PRIME CG34194 UPSTREAM CG34194 & 1 other DOWNSTREAM CG43370	TF binding site BDTNP1_TFBS_dl
3R	10502365	3R_10502365_SNP [dm3] 3R_14676643_SNP [dm6]	T	C	4.700e^-4	0.884	INTRON Meltrin
X	4860274	X_4860274_SNP [dm3] X_4966241_SNP [dm6]	T	C	4.710e^-4	0.884	INTRON CR44833	regulatory region REDfly_CRMs
3L	15209471	3L_15209471_SNP [dm3] 3L_15216371_SNP [dm6]	C	G	4.715e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2193656	3L_2193656_SNP [dm3] 3L_2193656_SNP [dm6]	T	C	4.722e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18389072	2L_18389072_SNP [dm3] 2L_18389072_SNP [dm6]	A	G	4.737e^-4	0.884	UTR_3_PRIME Fas3 INTRON Fas3
3R	13943841	3R_13943841_SNP [dm3] 3R_18118119_SNP [dm6]	A	G	4.745e^-4	0.884	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	15473738	2L_15473738_SNP [dm3] 2L_15473738_SNP [dm6]	C	G	4.746e^-4	0.884	INTERGENIC
2R	13415258	2R_13415258_SNP [dm3] 2R_17527753_SNP [dm6]	C	T	4.749e^-4	0.884	SPLICE_SITE_REGION Patronin INTRON Patronin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419744	2L_2419744_SNP [dm3] 2L_2419744_SNP [dm6]	T	G	4.753e^-4	0.884	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3R	19416720	3R_19416720_SNP [dm3] 3R_23590998_SNP [dm6]	G	A	4.758e^-4	0.884	SYNONYMOUS_CODING CG33337
2L	12264415	2L_12264415_SNP [dm3] 2L_12264415_SNP [dm6]	C	T	4.761e^-4	0.884	INTRON aret
2L	8684368	2L_8684368_SNP [dm3] 2L_8684368_SNP [dm6]	C	T	4.764e^-4	0.884	UTR_5_PRIME CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12046383	3L_12046383_SNP [dm3] 3L_12053283_SNP [dm6]	A	G	4.766e^-4	0.884	INTRON rols
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	4.777e^-4	0.884	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3L	1269398	3L_1269398_SNP [dm3] 3L_1269398_SNP [dm6]	G	C	4.779e^-4	0.884	INTRON CG9134
3R	14445160	3R_14445160_SNP [dm3] 3R_18619438_SNP [dm6]	A	C	4.782e^-4	0.884	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
2L	16590875	2L_16590875_SNP [dm3] 2L_16590875_SNP [dm6]	T	A	4.787e^-4	0.884	INTRON CG42389	TF binding site mE1_TFBS_inv
2L	3606994	2L_3606994_SNP [dm3] 2L_3606994_SNP [dm6]	T	G	4.794e^-4	0.884	UPSTREAM odd INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3758928	2L_3758928_SNP [dm3] 2L_3758928_SNP [dm6]	A	C	4.807e^-4	0.884	INTRON CG43707
2L	5951003	2L_5951003_SNP [dm3] 2L_5951003_SNP [dm6]	C	T	4.809e^-4	0.884	SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_sens
3R	889349	3R_889349_SNP [dm3] 3R_5063627_SNP [dm6]	C	T	4.819e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cad
2L	15500757	2L_15500757_SNP [dm3] 2L_15500757_SNP [dm6]	C	T	4.824e^-4	0.884	INTRON lace	TF binding site BDTNP1_TFBS_dl
3R	24667789	3R_24667789_SNP [dm3] 3R_28842067_SNP [dm6]	C	G	4.824e^-4	0.884	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	4.829e^-4	0.884	INTERGENIC
3R	8567259	3R_8567259_SNP [dm3] 3R_12741537_SNP [dm6]	C	G	4.834e^-4	0.884	DOWNSTREAM CG5999 & 1 other INTERGENIC
3R	20377369	3R_20377369_SNP [dm3] 3R_24551647_SNP [dm6]	C	T	4.842e^-4	0.884	SYNONYMOUS_CODING Esyt2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23881713	3R_23881713_SNP [dm3] 3R_28055991_SNP [dm6]	T	C	4.854e^-4	0.884	INTRON CG34362
3R	4934322	3R_4934322_SNP [dm3] 3R_9108600_SNP [dm6]	C	T	4.854e^-4	0.884	INTRON pum
3R	26016140	3R_26016140_SNP [dm3] 3R_30190418_SNP [dm6]	C	T	4.861e^-4	0.884	SYNONYMOUS_CODING CG9747	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3511183	3L_3511183_SNP [dm3] 3L_3511183_SNP [dm6]	A	T	4.861e^-4	0.884	UTR_3_PRIME ImpE2 DOWNSTREAM CG42324	TF binding site mE1_TFBS_cad
3L	11006623	3L_11006623_SNP [dm3] 3L_11013523_SNP [dm6]	C	A	4.865e^-4	0.884	INTERGENIC
3L	11006628	3L_11006628_INS [dm3] 3L_11013528_INS [dm6]	G	AAA	4.865e^-4	0.884	INTERGENIC
3L	3096359	3L_3096359_DEL [dm3] 3L_3096359_DEL [dm6]	AA	A	4.868e^-4	0.884	UPSTREAM tRNA:CR32287 & 1 other DOWNSTREAM tRNA:CR32288 & 2 others INTRON Cht7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16957492	3L_16957492_SNP [dm3] 3L_16964392_SNP [dm6]	C	T	4.869e^-4	0.884	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1668060	3R_1668060_SNP [dm3] 3R_5842338_SNP [dm6]	A	G	4.874e^-4	0.884	INTRON CG1213
2R	9535302	2R_9535302_SNP [dm3] 2R_13647797_SNP [dm6]	C	G	4.876e^-4	0.884	INTRON fas
X	20908441	X_20908441_SNP [dm3] X_21037414_SNP [dm6]	C	A	4.877e^-4	0.884	INTRON Ntf-2
3R	21465893	3R_21465893_SNP [dm3] 3R_25640171_SNP [dm6]	T	C	4.881e^-4	0.884	INTRON jigr1
X	12983886	X_12983886_DEL [dm3] X_13089853_DEL [dm6]	TT	T	4.885e^-4	0.884	UTR_5_PRIME hep	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	11333498	X_11333498_SNP [dm3] X_11439465_SNP [dm6]	G	T	4.903e^-4	0.884	INTRON Evi5
X	21374488	X_21374488_SNP [dm3] X_21503461_SNP [dm6]	A	T	4.904e^-4	0.884	INTRON CR45082
3L	2301435	3L_2301435_SNP [dm3] 3L_2301435_SNP [dm6]	A	T	4.907e^-4	0.884	DOWNSTREAM MsR2 INTERGENIC
3L	2301478	3L_2301478_SNP [dm3] 3L_2301478_SNP [dm6]	C	T	4.907e^-4	0.884	DOWNSTREAM MsR2 INTERGENIC
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	4.908e^-4	0.884	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18840161	3L_18840161_SNP [dm3] 3L_18847061_SNP [dm6]	A	C	4.920e^-4	0.884	UPSTREAM Indy INTERGENIC
X	10797035	X_10797035_SNP [dm3] X_10903002_SNP [dm6]	C	G	4.932e^-4	0.884	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	15637840	3R_15637840_SNP [dm3] 3R_19812118_SNP [dm6]	C	T	4.932e^-4	0.884	INTRON bnl
3R	13646825	3R_13646825_SNP [dm3] 3R_17821103_SNP [dm6]	G	A	4.932e^-4	0.884	INTRON tinc	TF binding site mE1_TFBS_HSA
3R	13692389	3R_13692389_SNP [dm3] 3R_17866667_SNP [dm6]	C	T	4.942e^-4	0.884	INTRON tinc	TF binding site mE1_TFBS_cad
2R	19102748	2R_19102748_INS [dm3] 2R_23215225_INS [dm6]	G	GG	4.943e^-4	0.884	INTERGENIC
X	17821948	X_17821948_SNP [dm3] X_17927915_SNP [dm6]	C	G	4.946e^-4	0.884	UTR_3_PRIME Sh
3L	4761286	3L_4761286_SNP [dm3] 3L_4761286_SNP [dm6]	A	T	4.973e^-4	0.884	INTRON RhoGEF64C	TF binding site mE1_TFBS_chinmo
3R	13931164	3R_13931164_SNP [dm3] 3R_18105442_SNP [dm6]	C	T	4.974e^-4	0.884	INTRON sr
2L	4156535	2L_4156535_SNP [dm3] 2L_4156535_SNP [dm6]	C	T	4.975e^-4	0.884	INTERGENIC
2R	9311193	2R_9311193_SNP [dm3] 2R_13423688_SNP [dm6]	G	C	4.975e^-4	0.884	UPSTREAM CG30060 INTRON CG42321

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.335e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1896 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	4.435e^-7	0.5	INTRON Tgi
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	5.335e^-7	0.5	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	9.472e^-7	0.592	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	5.700e^-6	0.919	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	6.592e^-6	0.919	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	6.639e^-6	0.919	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5725162	2L_5725162_SNP [dm3] 2L_5725162_SNP [dm6]	G	C	6.681e^-6	0.919	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725168	2L_5725168_SNP [dm3] 2L_5725168_SNP [dm6]	T	C	6.681e^-6	0.919	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725207	2L_5725207_SNP [dm3] 2L_5725207_SNP [dm6]	A	G	6.681e^-6	0.919	UTR_5_PRIME CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725239	2L_5725239_INS [dm3] 2L_5725239_INS [dm6]	T	TTAT	6.681e^-6	0.919	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5725304	2L_5725304_DEL [dm3] 2L_5725304_DEL [dm6]	ATAACA	A	6.681e^-6	0.919	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14444109	3R_14444109_SNP [dm3] 3R_18618387_SNP [dm6]	C	T	6.829e^-6	0.919	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5725321	2L_5725321_DEL [dm3] 2L_5725321_DEL [dm6]	TTAT	T	7.799e^-6	0.919	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	8.821e^-6	0.919	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	14444033	3R_14444033_SNP [dm3] 3R_18618311_SNP [dm6]	A	G	8.859e^-6	0.919	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	8.932e^-6	0.919	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	9.391e^-6	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	9.939e^-6	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	8683438	2L_8683438_SNP [dm3] 2L_8683438_SNP [dm6]	G	A	1.063e^-5	0.919	UPSTREAM tRNA:CR31890 DOWNSTREAM tRNA:CR31888 INTRON CG9289
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	1.071e^-5	0.919	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5725273	2L_5725273_SNP [dm3] 2L_5725273_SNP [dm6]	C	T	1.161e^-5	0.919	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12187814	3L_12187814_SNP [dm3] 3L_12194714_SNP [dm6]	T	C	1.174e^-5	0.919	INTERGENIC
3L	18269343	3L_18269343_SNP [dm3] 3L_18276243_SNP [dm6]	C	A	1.185e^-5	0.919	INTERGENIC
3R	13724775	3R_13724775_SNP [dm3] 3R_17899053_SNP [dm6]	G	A	1.232e^-5	0.919	INTRON Rim
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	1.422e^-5	0.919	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	1.435e^-5	0.919	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	1.458e^-5	0.919	INTRON trol
X	6543909	X_6543909_SNP [dm3] X_6649876_SNP [dm6]	C	T	1.462e^-5	0.919	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	1.501e^-5	0.919	INTRON gish	TF binding site BDTNP1_TFBS_dl
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	1.537e^-5	0.919	INTERGENIC
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	1.653e^-5	0.919	INTRON bnl
3R	18731332	3R_18731332_SNP [dm3] 3R_22905610_SNP [dm6]	G	T	1.742e^-5	0.919	INTRON klg
2R	7107191	2R_7107191_SNP [dm3] 2R_11219686_SNP [dm6]	G	A	1.811e^-5	0.919	UTR_5_PRIME Syx6 & 1 other UPSTREAM Syx6 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7123071	3L_7123071_SNP [dm3] 3L_7129971_SNP [dm6]	A	G	1.843e^-5	0.919	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	1.851e^-5	0.919	INTERGENIC
2L	3758927	2L_3758927_SNP [dm3] 2L_3758927_SNP [dm6]	C	A	1.938e^-5	0.919	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	2.049e^-5	0.919	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10610018	3R_10610018_SNP [dm3] 3R_14784296_SNP [dm6]	T	A	2.082e^-5	0.919	INTRON jvl
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	2.106e^-5	0.919	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10873822	2R_10873822_SNP [dm3] 2R_14986317_SNP [dm6]	G	T	2.117e^-5	0.919	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	14201216	3R_14201216_SNP [dm3] 3R_18375494_SNP [dm6]	T	G	2.119e^-5	0.919	EXON CR44946
X	5256720	X_5256720_SNP [dm3] X_5362687_SNP [dm6]	C	T	2.166e^-5	0.919	INTRON SK
X	4493675	X_4493675_SNP [dm3] X_4599642_SNP [dm6]	A	T	2.224e^-5	0.919	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8684368	2L_8684368_SNP [dm3] 2L_8684368_SNP [dm6]	C	T	2.246e^-5	0.919	UTR_5_PRIME CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	2.274e^-5	0.919	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	2.329e^-5	0.919	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	2.347e^-5	0.919	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14201214	3R_14201214_SNP [dm3] 3R_18375492_SNP [dm6]	A	T	2.355e^-5	0.919	EXON CR44946
3L	13396948	3L_13396948_SNP [dm3] 3L_13403848_SNP [dm6]	C	T	2.661e^-5	0.921	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18731264	3R_18731264_SNP [dm3] 3R_22905542_SNP [dm6]	G	T	2.713e^-5	0.921	INTRON klg
2L	16865188	2L_16865188_SNP [dm3] 2L_16865188_SNP [dm6]	G	T	2.724e^-5	0.921	INTERGENIC
2L	5725640	2L_5725640_SNP [dm3] 2L_5725640_SNP [dm6]	C	A	2.898e^-5	0.921	DOWNSTREAM CG14006 INTRON CG11030
2L	5725284	2L_5725284_SNP [dm3] 2L_5725284_SNP [dm6]	G	T	2.910e^-5	0.921	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7408903	2L_7408903_SNP [dm3] 2L_7408903_SNP [dm6]	T	C	2.930e^-5	0.921	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3R	23234650	3R_23234650_SNP [dm3] 3R_27408928_SNP [dm6]	T	C	2.969e^-5	0.921	INTRON side
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	3.065e^-5	0.921	INTERGENIC
2L	9460389	2L_9460389_SNP [dm3] 2L_9460389_SNP [dm6]	G	C	3.067e^-5	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	3.115e^-5	0.921	INTRON bnl
3R	3401683	3R_3401683_DEL [dm3] 3R_7575961_DEL [dm6]	AGCA	A	3.198e^-5	0.921	INTRON CG34127
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	3.229e^-5	0.921	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
2L	3759193	2L_3759193_SNP [dm3] 2L_3759193_SNP [dm6]	A	G	3.246e^-5	0.921	UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	3.257e^-5	0.921	NON_SYNONYMOUS_CODING sti
2R	4431399	2R_4431399_SNP [dm3] 2R_8543894_SNP [dm6]	T	G	3.450e^-5	0.921	UPSTREAM CR44279 INTERGENIC
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	3.542e^-5	0.921	INTRON CG3961
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	3.678e^-5	0.921	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
2L	16852135	2L_16852135_SNP [dm3] 2L_16852135_SNP [dm6]	C	T	3.702e^-5	0.921	INTRON CG31810	TF binding site BDTNP1_TFBS_dl
3L	14538623	3L_14538623_SNP [dm3] 3L_14545523_SNP [dm6]	C	G	3.761e^-5	0.921	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8679204	2L_8679204_SNP [dm3] 2L_8679204_SNP [dm6]	T	C	3.859e^-5	0.921	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2R	10137395	2R_10137395_SNP [dm3] 2R_14249890_SNP [dm6]	T	C	3.976e^-5	0.921	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	14444188	3R_14444188_INS [dm3] 3R_18618466_INS [dm6]	A	ATCG	4.025e^-5	0.921	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	4.096e^-5	0.921	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	16864327	2L_16864327_SNP [dm3] 2L_16864327_SNP [dm6]	A	G	4.119e^-5	0.921	INTERGENIC
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	4.276e^-5	0.921	INTRON CG43174
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	4.348e^-5	0.921	INTERGENIC
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	4.355e^-5	0.921	INTERGENIC
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	4.413e^-5	0.921	INTRON Tgi
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	4.427e^-5	0.921	INTRON CG10663
X	5259515	X_5259515_SNP [dm3] X_5365482_SNP [dm6]	T	A	4.458e^-5	0.921	UTR_5_PRIME SK INTRON SK
2L	16174245	2L_16174245_SNP [dm3] 2L_16174245_SNP [dm6]	T	C	4.565e^-5	0.921	INTRON Ca-alpha1D
3R	15636652	3R_15636652_SNP [dm3] 3R_19810930_SNP [dm6]	A	G	4.574e^-5	0.921	INTRON bnl
2R	10873784	2R_10873784_SNP [dm3] 2R_14986279_SNP [dm6]	G	A	4.593e^-5	0.921	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23235845	3R_23235845_SNP [dm3] 3R_27410123_SNP [dm6]	A	T	4.601e^-5	0.921	INTRON side
3L	5823386	3L_5823386_SNP [dm3] 3L_5830286_SNP [dm6]	A	T	4.615e^-5	0.921	INTRON vn
2R	12738086	2R_12738086_SNP [dm3] 2R_16850581_SNP [dm6]	C	T	4.662e^-5	0.921	SYNONYMOUS_CODING IntS8 DOWNSTREAM CR44467	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12738094	2R_12738094_SNP [dm3] 2R_16850589_SNP [dm6]	C	T	4.662e^-5	0.921	SYNONYMOUS_CODING IntS8 DOWNSTREAM CR44467	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15652088	3R_15652088_SNP [dm3] 3R_19826366_SNP [dm6]	T	C	4.809e^-5	0.921	INTRON bnl
3L	13400561	3L_13400561_SNP [dm3] 3L_13407461_SNP [dm6]	A	T	4.824e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9460876	2L_9460876_SNP [dm3] 2L_9460876_SNP [dm6]	C	A	4.995e^-5	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1643643	2L_1643643_SNP [dm3] 2L_1643643_SNP [dm6]	T	G	5.010e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18815512	2R_18815512_SNP [dm3] 2R_22927989_SNP [dm6]	T	G	5.066e^-5	0.921	UTR_3_PRIME CG42678 UPSTREAM CG42678 INTRON CG42678	TF binding site mE1_TFBS_cad
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	5.071e^-5	0.921	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11455667	3R_11455667_SNP [dm3] 3R_15629945_SNP [dm6]	T	C	5.125e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13984043	3L_13984043_SNP [dm3] 3L_13990943_SNP [dm6]	G	C	5.140e^-5	0.921	INTRON CG17364
2L	8682482	2L_8682482_SNP [dm3] 2L_8682482_SNP [dm6]	G	A	5.271e^-5	0.921	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
3R	11443571	3R_11443571_SNP [dm3] 3R_15617849_SNP [dm6]	A	G	5.276e^-5	0.921	INTERGENIC
3L	9291423	3L_9291423_SNP [dm3] 3L_9298323_SNP [dm6]	T	C	5.303e^-5	0.921	INTERGENIC
2L	3758950	2L_3758950_SNP [dm3] 2L_3758950_SNP [dm6]	G	T	5.394e^-5	0.921	INTRON CG43707
3L	11654517	3L_11654517_SNP [dm3] 3L_11661417_SNP [dm6]	C	G	5.401e^-5	0.921	INTRON CG32085
2L	10500728	2L_10500728_SNP [dm3] 2L_10500728_SNP [dm6]	T	A	5.416e^-5	0.921	INTRON Myo31DF
2L	5899826	2L_5899826_SNP [dm3] 2L_5899826_SNP [dm6]	G	A	5.422e^-5	0.921	DOWNSTREAM CR44579 INTERGENIC
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	5.517e^-5	0.921	UPSTREAM CG2113 INTERGENIC
2R	16113158	2R_16113158_SNP [dm3] 2R_20225653_SNP [dm6]	G	A	5.611e^-5	0.921	INTERGENIC
2L	968988	2L_968988_INS [dm3] 2L_968988_INS [dm6]	A	AT	5.744e^-5	0.921	INTERGENIC
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	5.823e^-5	0.921	SYNONYMOUS_CODING bi INTRON CR32773
2L	16314933	2L_16314933_SNP [dm3] 2L_16314933_SNP [dm6]	G	A	5.872e^-5	0.921	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9460885	2L_9460885_DEL [dm3] 2L_9460885_DEL [dm6]	CCTTCATCTA	C	5.942e^-5	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9460394	2L_9460394_SNP [dm3] 2L_9460394_SNP [dm6]	T	A	6.284e^-5	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11457462	3L_11457462_SNP [dm3] 3L_11464362_SNP [dm6]	G	A	6.359e^-5	0.921	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14203118	3R_14203118_SNP [dm3] 3R_18377396_SNP [dm6]	C	A	6.489e^-5	0.921	DOWNSTREAM CR44946 & 1 other INTERGENIC
3R	18186935	3R_18186935_SNP [dm3] 3R_22361213_SNP [dm6]	A	T	6.556e^-5	0.921	SYNONYMOUS_CODING PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
2R	10132930	2R_10132930_SNP [dm3] 2R_14245425_SNP [dm6]	T	A	6.737e^-5	0.921	NON_SYNONYMOUS_CODING CG8503
X	9235897	X_9235897_SNP [dm3] X_9341864_SNP [dm6]	G	T	6.747e^-5	0.921	INTRON CG34449
2L	16213458	2L_16213458_SNP [dm3] 2L_16213458_SNP [dm6]	G	A	6.754e^-5	0.921	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5257565	X_5257565_SNP [dm3] X_5363532_SNP [dm6]	T	C	6.780e^-5	0.921	INTRON SK	TF binding site BDTNP1_TFBS_dl
X	6601168	X_6601168_SNP [dm3] X_6707135_SNP [dm6]	A	T	6.786e^-5	0.921	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16070007	2R_16070007_SNP [dm3] 2R_20182502_SNP [dm6]	A	C	6.800e^-5	0.921	INTERGENIC
X	5257602	X_5257602_SNP [dm3] X_5363569_SNP [dm6]	A	G	6.830e^-5	0.921	INTRON SK	TF binding site BDTNP1_TFBS_dl
3L	9291483	3L_9291483_SNP [dm3] 3L_9298383_SNP [dm6]	A	T	6.884e^-5	0.921	INTERGENIC
3L	9291486	3L_9291486_MNP [dm3] 3L_9298386_MNP [dm6]	GGC	TCA	6.884e^-5	0.921	INTERGENIC
2L	7409033	2L_7409033_SNP [dm3] 2L_7409033_SNP [dm6]	C	A	6.910e^-5	0.921	SYNONYMOUS_CODING CG5181 DOWNSTREAM CG5177
2L	14777813	2L_14777813_SNP [dm3] 2L_14777813_SNP [dm6]	T	A	6.911e^-5	0.921	INTERGENIC
2L	8683603	2L_8683603_SNP [dm3] 2L_8683603_SNP [dm6]	A	T	7.025e^-5	0.921	DOWNSTREAM tRNA:CR31888 & 1 other INTRON CG9289
3R	5888035	3R_5888035_SNP [dm3] 3R_10062313_SNP [dm6]	G	A	7.052e^-5	0.921	UPSTREAM CG33630 & 1 other EXON CR33629
X	11333498	X_11333498_SNP [dm3] X_11439465_SNP [dm6]	G	T	7.093e^-5	0.921	INTRON Evi5
2L	8683956	2L_8683956_DEL [dm3] 2L_8683956_DEL [dm6]	AAGAAATGCATGTACCTA...	A	7.249e^-5	0.921	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
2L	15166366	2L_15166366_SNP [dm3] 2L_15166366_SNP [dm6]	A	G	7.420e^-5	0.921	SYNONYMOUS_CODING CG4168
X	3351839	X_3351839_SNP [dm3] X_3457806_SNP [dm6]	C	A	7.491e^-5	0.921	INTRON CR44999
3R	14233814	3R_14233814_SNP [dm3] 3R_18408092_SNP [dm6]	C	T	7.590e^-5	0.921	SYNONYMOUS_CODING CG31122	TF binding site BDTNP1_TFBS_da
2R	15316445	2R_15316445_SNP [dm3] 2R_19428940_SNP [dm6]	G	T	7.613e^-5	0.921	UTR_3_PRIME CalpA INTRON CalpA
3R	22175880	3R_22175880_SNP [dm3] 3R_26350158_SNP [dm6]	T	C	7.671e^-5	0.921	SYNONYMOUS_CODING CG33970
2R	16724027	2R_16724027_SNP [dm3] 2R_20836522_SNP [dm6]	C	T	7.685e^-5	0.921	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17749973	3R_17749973_SNP [dm3] 3R_21924251_SNP [dm6]	A	G	7.743e^-5	0.921	INTERGENIC
3R	22986996	3R_22986996_SNP [dm3] 3R_27161274_SNP [dm6]	A	C	7.753e^-5	0.921	UTR_5_PRIME CG5909
2R	14665497	2R_14665497_SNP [dm3] 2R_18777992_SNP [dm6]	C	G	7.860e^-5	0.921	DOWNSTREAM CR43964 INTERGENIC
2R	7320584	2R_7320584_SNP [dm3] 2R_11433079_SNP [dm6]	T	A	7.866e^-5	0.921	EXON CR43771
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	7.883e^-5	0.921	INTERGENIC
2L	5899820	2L_5899820_SNP [dm3] 2L_5899820_SNP [dm6]	A	C	8.061e^-5	0.921	DOWNSTREAM CR44579 INTERGENIC
2L	5899842	2L_5899842_SNP [dm3] 2L_5899842_SNP [dm6]	G	A	8.061e^-5	0.921	DOWNSTREAM CR44579 INTERGENIC
3L	14538584	3L_14538584_DEL [dm3] 3L_14545484_DEL [dm6]	GCCTCGTTTTGTG...	G	8.084e^-5	0.921	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	8.216e^-5	0.921	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2L	5725497	2L_5725497_SNP [dm3] 2L_5725497_SNP [dm6]	C	A	8.282e^-5	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	8.375e^-5	0.921	UPSTREAM Indy INTERGENIC
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	8.403e^-5	0.921	DOWNSTREAM CR43964 INTERGENIC
3R	15164351	3R_15164351_SNP [dm3] 3R_19338629_SNP [dm6]	A	T	8.716e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10873821	2R_10873821_SNP [dm3] 2R_14986316_SNP [dm6]	C	A	8.754e^-5	0.921	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15164353	3R_15164353_SNP [dm3] 3R_19338631_SNP [dm6]	G	A	8.763e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16864202	2L_16864202_SNP [dm3] 2L_16864202_SNP [dm6]	A	G	8.834e^-5	0.921	INTERGENIC
2L	1668078	2L_1668078_SNP [dm3] 2L_1668078_SNP [dm6]	C	A	8.965e^-5	0.921	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	9.015e^-5	0.921	INTERGENIC
3L	12453624	3L_12453624_SNP [dm3] 3L_12460524_SNP [dm6]	G	T	9.094e^-5	0.921	INTERGENIC
3L	13400560	3L_13400560_SNP [dm3] 3L_13407460_SNP [dm6]	G	C	9.144e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
3R	18731312	3R_18731312_SNP [dm3] 3R_22905590_SNP [dm6]	G	T	9.162e^-5	0.921	INTRON klg
2R	16407861	2R_16407861_SNP [dm3] 2R_20520356_SNP [dm6]	G	A	9.199e^-5	0.921	INTERGENIC
3R	10907966	3R_10907966_SNP [dm3] 3R_15082244_SNP [dm6]	A	T	9.308e^-5	0.921	INTRON CG6966	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7938227	2R_7938227_SNP [dm3] 2R_12050722_SNP [dm6]	G	A	9.355e^-5	0.921	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
3R	14510312	3R_14510312_SNP [dm3] 3R_18684590_SNP [dm6]	A	T	9.451e^-5	0.921	SYNONYMOUS_CODING CG7708
2R	11988621	2R_11988621_SNP [dm3] 2R_16101116_SNP [dm6]	C	T	9.520e^-5	0.921	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	16948441	2R_16948441_SNP [dm3] 2R_21060936_SNP [dm6]	C	T	9.522e^-5	0.921	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	9.592e^-5	0.921	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27595393	3R_27595393_SNP [dm3] 3R_31769671_SNP [dm6]	G	T	9.752e^-5	0.921	DOWNSTREAM pncr017:3R INTRON CG2135
3L	8951583	3L_8951583_SNP [dm3] 3L_8958483_SNP [dm6]	C	G	9.855e^-5	0.921	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
2L	15164153	2L_15164153_SNP [dm3] 2L_15164153_SNP [dm6]	T	C	9.913e^-5	0.921	INTRON CG4168	TF binding site mE1_TFBS_cad
2R	16070005	2R_16070005_SNP [dm3] 2R_20182500_SNP [dm6]	A	T	9.921e^-5	0.921	INTERGENIC
2L	6220938	2L_6220938_SNP [dm3] 2L_6220938_SNP [dm6]	C	G	9.936e^-5	0.921	INTERGENIC
3L	13863233	3L_13863233_SNP [dm3] 3L_13870133_SNP [dm6]	C	A	9.966e^-5	0.921	UTR_3_PRIME dysc
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	1.003e^-4	0.921	INTRON twi & 1 other
3R	24613931	3R_24613931_DEL [dm3] 3R_28788209_DEL [dm6]	ATA	A	1.013e^-4	0.921	INTERGENIC
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	1.020e^-4	0.921	INTRON bnl
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	1.023e^-4	0.921	INTERGENIC
2R	9908839	2R_9908839_SNP [dm3] 2R_14021334_SNP [dm6]	A	G	1.027e^-4	0.921	INTRON mam
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	1.029e^-4	0.921	INTERGENIC
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	1.038e^-4	0.921	INTERGENIC
3L	12721166	3L_12721166_DEL [dm3] 3L_12728066_DEL [dm6]	TTATTTTAAATAATTTAATT...	T	1.055e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18423193	X_18423193_SNP [dm3] X_18529160_SNP [dm6]	A	T	1.055e^-4	0.921	NON_SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx
X	20417544	X_20417544_SNP [dm3] X_20546517_SNP [dm6]	C	T	1.058e^-4	0.921	INTRON RunxB
2L	1644348	2L_1644348_INS [dm3] 2L_1644348_INS [dm6]	T	TT	1.064e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	1.065e^-4	0.921	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	1.070e^-4	0.921	INTRON CG15365
3R	24978557	3R_24978557_SNP [dm3] 3R_29152835_SNP [dm6]	C	A	1.085e^-4	0.921	NON_SYNONYMOUS_CODING Slbp UPSTREAM Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2747256	2L_2747256_SNP [dm3] 2L_2747256_SNP [dm6]	A	G	1.085e^-4	0.921	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14203040	3R_14203040_SNP [dm3] 3R_18377318_SNP [dm6]	G	T	1.092e^-4	0.921	DOWNSTREAM CR44946 & 1 other INTERGENIC
3L	20718546	3L_20718546_SNP [dm3] 3L_20725446_SNP [dm6]	C	G	1.093e^-4	0.921	INTERGENIC
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	1.098e^-4	0.921	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	5821835	3L_5821835_SNP [dm3] 3L_5828735_SNP [dm6]	C	T	1.099e^-4	0.921	INTRON vn
3R	14203179	3R_14203179_SNP [dm3] 3R_18377457_SNP [dm6]	T	C	1.118e^-4	0.921	DOWNSTREAM CR44946 & 1 other INTERGENIC
2R	14829638	2R_14829638_SNP [dm3] 2R_18942133_SNP [dm6]	G	T	1.131e^-4	0.921	INTRON sano
2L	16213043	2L_16213043_SNP [dm3] 2L_16213043_SNP [dm6]	A	T	1.132e^-4	0.921	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	1.140e^-4	0.921	INTERGENIC
3L	4487248	3L_4487248_SNP [dm3] 3L_4487248_SNP [dm6]	A	G	1.153e^-4	0.921	SYNONYMOUS_CODING CG13722
3R	12109214	3R_12109214_SNP [dm3] 3R_16283492_SNP [dm6]	A	G	1.161e^-4	0.921	INTRON gish
2L	19123118	2L_19123118_SNP [dm3] 2L_19123118_SNP [dm6]	C	T	1.161e^-4	0.921	SPLICE_SITE_REGION l_2_37Cc DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
2L	8177525	2L_8177525_SNP [dm3] 2L_8177525_SNP [dm6]	C	T	1.161e^-4	0.921	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6156833	X_6156833_SNP [dm3] X_6262800_SNP [dm6]	C	T	1.164e^-4	0.921	DOWNSTREAM CG3781 INTRON schlank
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	1.169e^-4	0.921	INTRON bnl
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	1.172e^-4	0.921	INTRON CG43340
3R	26303701	3R_26303701_SNP [dm3] 3R_30477979_SNP [dm6]	C	A	1.173e^-4	0.921	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19126526	3R_19126526_SNP [dm3] 3R_23300804_SNP [dm6]	A	G	1.184e^-4	0.921	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15987030	2R_15987030_SNP [dm3] 2R_20099525_SNP [dm6]	A	T	1.184e^-4	0.921	INTERGENIC
2R	18151309	2R_18151309_SNP [dm3] 2R_22263804_SNP [dm6]	A	T	1.192e^-4	0.921	INTRON dve
2L	16213061	2L_16213061_SNP [dm3] 2L_16213061_SNP [dm6]	G	A	1.207e^-4	0.921	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
2R	16070151	2R_16070151_SNP [dm3] 2R_20182646_SNP [dm6]	A	C	1.213e^-4	0.921	INTERGENIC
3R	13750932	3R_13750932_SNP [dm3] 3R_17925210_SNP [dm6]	A	G	1.214e^-4	0.921	INTRON cpo
3R	17319643	3R_17319643_SNP [dm3] 3R_21493921_SNP [dm6]	A	C	1.225e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12187688	3L_12187688_SNP [dm3] 3L_12194588_SNP [dm6]	T	C	1.226e^-4	0.921	UPSTREAM thoc6 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	13822924	2L_13822924_SNP [dm3] 2L_13822924_SNP [dm6]	C	T	1.227e^-4	0.921	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5849024	X_5849024_DEL [dm3] X_5954991_DEL [dm6]	TGTA	C	1.244e^-4	0.921	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
X	4412920	X_4412920_SNP [dm3] X_4518887_SNP [dm6]	A	G	1.249e^-4	0.921	INTRON CR32773	TF binding site mE1_TFBS_inv
X	465384	X_465384_SNP [dm3] X_571351_SNP [dm6]	A	G	1.255e^-4	0.921	SPLICE_SITE_REGION Appl SYNONYMOUS_CODING Appl
3R	23235878	3R_23235878_SNP [dm3] 3R_27410156_SNP [dm6]	C	T	1.258e^-4	0.921	INTRON side
2R	7401467	2R_7401467_SNP [dm3] 2R_11513962_SNP [dm6]	C	T	1.261e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8553563	2L_8553563_SNP [dm3] 2L_8553563_SNP [dm6]	A	G	1.262e^-4	0.921	INTRON Sema-1a
2L	16318739	2L_16318739_DEL [dm3] 2L_16318739_DEL [dm6]	TT	T	1.264e^-4	0.921	INTRON cact
2L	8389054	2L_8389054_SNP [dm3] 2L_8389054_SNP [dm6]	A	G	1.264e^-4	0.921	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
3L	16445540	3L_16445540_SNP [dm3] 3L_16452440_SNP [dm6]	A	T	1.267e^-4	0.921	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15164335	3R_15164335_SNP [dm3] 3R_19338613_SNP [dm6]	A	T	1.268e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20908441	X_20908441_SNP [dm3] X_21037414_SNP [dm6]	C	A	1.269e^-4	0.921	INTRON Ntf-2
3R	16288966	3R_16288966_SNP [dm3] 3R_20463244_SNP [dm6]	G	T	1.271e^-4	0.921	INTRON Gfrl
X	12873781	X_12873781_SNP [dm3] X_12979748_SNP [dm6]	A	G	1.274e^-4	0.921	INTERGENIC
3L	4485607	3L_4485607_SNP [dm3] 3L_4485607_SNP [dm6]	T	G	1.276e^-4	0.921	SYNONYMOUS_CODING CG13722	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5887709	3R_5887709_SNP [dm3] 3R_10061987_SNP [dm6]	C	A	1.287e^-4	0.921	SPLICE_SITE_REGION CR33629 UPSTREAM CG33630 & 1 other DOWNSTREAM Npc2c INTRON CR33629
3R	15164315	3R_15164315_SNP [dm3] 3R_19338593_SNP [dm6]	G	C	1.289e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13394058	3L_13394058_SNP [dm3] 3L_13400958_SNP [dm6]	A	T	1.289e^-4	0.921	UTR_5_PRIME sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2749954	2L_2749954_SNP [dm3] 2L_2749954_SNP [dm6]	G	T	1.292e^-4	0.921	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17750276	3R_17750276_SNP [dm3] 3R_21924554_SNP [dm6]	C	T	1.296e^-4	0.921	INTERGENIC
2L	5725469	2L_5725469_SNP [dm3] 2L_5725469_SNP [dm6]	G	A	1.306e^-4	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3265181	2L_3265181_SNP [dm3] 2L_3265181_SNP [dm6]	C	T	1.322e^-4	0.921	EXON CR45706
2R	6740279	2R_6740279_SNP [dm3] 2R_10852774_SNP [dm6]	T	A	1.330e^-4	0.921	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3L	12187706	3L_12187706_SNP [dm3] 3L_12194606_SNP [dm6]	T	C	1.336e^-4	0.921	UPSTREAM thoc6 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	1.349e^-4	0.921	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6680787	3L_6680787_SNP [dm3] 3L_6687687_SNP [dm6]	G	A	1.351e^-4	0.921	INTERGENIC
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	1.356e^-4	0.921	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
3L	6454434	3L_6454434_SNP [dm3] 3L_6461334_SNP [dm6]	A	G	1.365e^-4	0.921	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9460798	2L_9460798_SNP [dm3] 2L_9460798_SNP [dm6]	G	C	1.365e^-4	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17772545	3R_17772545_SNP [dm3] 3R_21946823_SNP [dm6]	G	T	1.369e^-4	0.921	INTERGENIC
3L	4506005	3L_4506005_SNP [dm3] 3L_4506005_SNP [dm6]	A	G	1.372e^-4	0.921	INTRON NT1
3L	5481201	3L_5481201_SNP [dm3] 3L_5488101_SNP [dm6]	T	G	1.391e^-4	0.921	INTERGENIC
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	1.393e^-4	0.921	INTERGENIC
2L	16590875	2L_16590875_SNP [dm3] 2L_16590875_SNP [dm6]	T	A	1.401e^-4	0.921	INTRON CG42389	TF binding site mE1_TFBS_inv
2L	8686102	2L_8686102_SNP [dm3] 2L_8686102_SNP [dm6]	A	G	1.402e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7480514	3L_7480514_SNP [dm3] 3L_7487414_SNP [dm6]	G	C	1.412e^-4	0.921	SYNONYMOUS_CODING mthl6
2L	1579475	2L_1579475_SNP [dm3] 2L_1579475_SNP [dm6]	C	T	1.419e^-4	0.921	INTRON haf	TF binding site mE1_TFBS_sens
2R	18429961	2R_18429961_SNP [dm3] 2R_22542456_SNP [dm6]	A	T	1.426e^-4	0.921	INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17749844	3R_17749844_DEL [dm3] 3R_21924122_DEL [dm6]	TT	T	1.431e^-4	0.921	INTERGENIC
3L	15683073	3L_15683073_SNP [dm3] 3L_15689973_SNP [dm6]	C	T	1.432e^-4	0.921	INTRON CG34451	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	9101069	2R_9101069_SNP [dm3] 2R_13213564_SNP [dm6]	A	T	1.439e^-4	0.921	INTRON AQP
2L	16802894	2L_16802894_SNP [dm3] 2L_16802894_SNP [dm6]	T	C	1.439e^-4	0.921	INTRON CG13280	TF binding site mE1_TFBS_chinmo
3R	26302894	3R_26302894_SNP [dm3] 3R_30477172_SNP [dm6]	C	T	1.444e^-4	0.921	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3351850	X_3351850_SNP [dm3] X_3457817_SNP [dm6]	G	A	1.446e^-4	0.921	INTRON CR44999
3L	4125860	3L_4125860_SNP [dm3] 3L_4125860_SNP [dm6]	G	T	1.451e^-4	0.921	INTRON ens	TF binding site mE1_TFBS_chinmo
2R	14763843	2R_14763843_SNP [dm3] 2R_18876338_SNP [dm6]	T	C	1.462e^-4	0.921	INTERGENIC
3R	26302885	3R_26302885_SNP [dm3] 3R_30477163_SNP [dm6]	C	T	1.470e^-4	0.921	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4488812	3L_4488812_INS [dm3] 3L_4488812_INS [dm6]	T	TCTT	1.479e^-4	0.921	INTRON CG13722
2R	16948535	2R_16948535_SNP [dm3] 2R_21061030_SNP [dm6]	C	T	1.494e^-4	0.921	UPSTREAM CG15653 & 1 other INTRON mRpL54	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1341990	2L_1341990_DEL [dm3] 2L_1341990_DEL [dm6]	AGGGTATTAAGTACTTAA...	A	1.510e^-4	0.921	SPLICE_SITE_REGION CG33923 INTRON CG33923
2L	1342009	2L_1342009_SNP [dm3] 2L_1342009_SNP [dm6]	G	A	1.510e^-4	0.921	INTRON CG33923
3R	20540311	3R_20540311_SNP [dm3] 3R_24714589_SNP [dm6]	C	A	1.515e^-4	0.921	UPSTREAM CG13627 INTRON CG13627
2L	5725480	2L_5725480_SNP [dm3] 2L_5725480_SNP [dm6]	A	T	1.522e^-4	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13775857	2L_13775857_SNP [dm3] 2L_13775857_SNP [dm6]	A	C	1.524e^-4	0.921	INTRON CG9008
3R	16772518	3R_16772518_SNP [dm3] 3R_20946796_SNP [dm6]	C	T	1.528e^-4	0.921	INTERGENIC
3R	14203266	3R_14203266_SNP [dm3] 3R_18377544_SNP [dm6]	A	C	1.529e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC
2L	6112459	2L_6112459_SNP [dm3] 2L_6112459_SNP [dm6]	C	G	1.530e^-4	0.921	INTRON stai
X	4412898	X_4412898_SNP [dm3] X_4518865_SNP [dm6]	A	G	1.536e^-4	0.921	INTRON CR32773	TF binding site mE1_TFBS_inv
X	4493375	X_4493375_SNP [dm3] X_4599342_SNP [dm6]	T	G	1.536e^-4	0.921	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	1.543e^-4	0.921	INTRON CG43444	TF binding site mE1_TFBS_inv
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	1.552e^-4	0.921	DOWNSTREAM CG14476 INTERGENIC
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	1.556e^-4	0.921	INTRON PhKgamma	TF binding site mE1_TFBS_sens
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	1.572e^-4	0.921	INTRON CG43729
3R	10961237	3R_10961237_SNP [dm3] 3R_15135515_SNP [dm6]	C	A	1.578e^-4	0.921	SYNONYMOUS_CODING CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	23235794	3R_23235794_SNP [dm3] 3R_27410072_SNP [dm6]	T	C	1.581e^-4	0.921	INTRON side
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	1.596e^-4	0.921	INTERGENIC
3R	5887796	3R_5887796_DEL [dm3] 3R_10062074_DEL [dm6]	GG	G	1.610e^-4	0.921	UPSTREAM CG33630 & 1 other DOWNSTREAM Npc2c EXON CR33629
3L	16445447	3L_16445447_SNP [dm3] 3L_16452347_SNP [dm6]	C	T	1.614e^-4	0.921	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4503344	3L_4503344_SNP [dm3] 3L_4503344_SNP [dm6]	A	G	1.624e^-4	0.921	SYNONYMOUS_CODING NT1 DOWNSTREAM NT1
2R	19082945	2R_19082945_SNP [dm3] 2R_23195422_SNP [dm6]	C	G	1.638e^-4	0.921	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2746110	2L_2746110_SNP [dm3] 2L_2746110_SNP [dm6]	C	T	1.651e^-4	0.921	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	10708540	3L_10708540_SNP [dm3] 3L_10715440_SNP [dm6]	A	T	1.665e^-4	0.921	INTERGENIC
2R	11598171	2R_11598171_SNP [dm3] 2R_15710666_SNP [dm6]	A	G	1.666e^-4	0.921	DOWNSTREAM CG30083 INTERGENIC
2R	15868038	2R_15868038_SNP [dm3] 2R_19980533_SNP [dm6]	T	A	1.668e^-4	0.921	SPLICE_SITE_REGION CG8654 UPSTREAM CG8654 INTRON CG8654
X	7906589	X_7906589_DEL [dm3] X_8012556_DEL [dm6]	TGT	T	1.671e^-4	0.921	INTRON Tbh
X	5258292	X_5258292_DEL [dm3] X_5364259_DEL [dm6]	GAGAGAG	G	1.672e^-4	0.921	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20908445	X_20908445_SNP [dm3] X_21037418_SNP [dm6]	G	C	1.673e^-4	0.921	INTRON Ntf-2
3L	6436510	3L_6436510_SNP [dm3] 3L_6443410_SNP [dm6]	A	G	1.683e^-4	0.921	INTRON CG42747
3R	12318496	3R_12318496_SNP [dm3] 3R_16492774_SNP [dm6]	C	A	1.688e^-4	0.921	SYNONYMOUS_CODING Cad89D
2R	18863425	2R_18863425_SNP [dm3] 2R_22975902_SNP [dm6]	G	T	1.690e^-4	0.921	INTERGENIC
3R	14201172	3R_14201172_SNP [dm3] 3R_18375450_SNP [dm6]	G	A	1.702e^-4	0.921	EXON CR44946
3R	14201179	3R_14201179_SNP [dm3] 3R_18375457_SNP [dm6]	G	A	1.702e^-4	0.921	EXON CR44946
2L	19383086	2L_19383086_SNP [dm3] 2L_19383086_SNP [dm6]	A	G	1.704e^-4	0.921	UTR_3_PRIME CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
2R	18863015	2R_18863015_SNP [dm3] 2R_22975492_SNP [dm6]	T	C	1.704e^-4	0.921	INTERGENIC
2R	18863371	2R_18863371_SNP [dm3] 2R_22975848_SNP [dm6]	A	C	1.704e^-4	0.921	INTERGENIC
3R	26189151	3R_26189151_SNP [dm3] 3R_30363429_SNP [dm6]	A	G	1.720e^-4	0.921	UTR_3_PRIME hdc
2L	8684114	2L_8684114_SNP [dm3] 2L_8684114_SNP [dm6]	C	A	1.735e^-4	0.921	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other
2L	8684150	2L_8684150_SNP [dm3] 2L_8684150_SNP [dm6]	A	T	1.735e^-4	0.921	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other
2L	8684174	2L_8684174_SNP [dm3] 2L_8684174_SNP [dm6]	T	C	1.735e^-4	0.921	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other
3R	23234652	3R_23234652_SNP [dm3] 3R_27408930_SNP [dm6]	T	G	1.742e^-4	0.921	INTRON side
2R	18172671	2R_18172671_SNP [dm3] 2R_22285166_SNP [dm6]	G	T	1.743e^-4	0.921	INTRON dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	12569577	3L_12569577_SNP [dm3] 3L_12576477_SNP [dm6]	G	A	1.747e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	5822918	3L_5822918_SNP [dm3] 3L_5829818_SNP [dm6]	G	C	1.752e^-4	0.921	INTRON vn
3L	5752808	3L_5752808_SNP [dm3] 3L_5759708_SNP [dm6]	A	G	1.769e^-4	0.921	NON_SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	9868219	3R_9868219_SNP [dm3] 3R_14042497_SNP [dm6]	G	A	1.772e^-4	0.921	INTERGENIC
3R	9868233	3R_9868233_DEL [dm3] 3R_14042511_DEL [dm6]	TGTAGGCATATAT...	T	1.772e^-4	0.921	INTERGENIC
2R	15316572	2R_15316572_SNP [dm3] 2R_19429067_SNP [dm6]	A	T	1.782e^-4	0.921	DOWNSTREAM CalpA INTRON CalpA
2R	16070009	2R_16070009_SNP [dm3] 2R_20182504_SNP [dm6]	T	G	1.789e^-4	0.921	INTERGENIC
2L	8684018	2L_8684018_SNP [dm3] 2L_8684018_SNP [dm6]	T	G	1.790e^-4	0.921	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other
3L	9291482	3L_9291482_SNP [dm3] 3L_9298382_SNP [dm6]	A	T	1.791e^-4	0.921	INTERGENIC
3R	7106080	3R_7106080_SNP [dm3] 3R_11280358_SNP [dm6]	T	A	1.796e^-4	0.921	INTRON CR31386
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	1.801e^-4	0.921	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	7857137	2R_7857137_SNP [dm3] 2R_11969632_SNP [dm6]	A	C	1.804e^-4	0.921	UPSTREAM PI31 INTRON PI31	TF binding site BDTNP1_TFBS_dl
2R	9889153	2R_9889153_INS [dm3] 2R_14001648_INS [dm6]	A	ATGTA	1.820e^-4	0.921	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10941829	2R_10941829_SNP [dm3] 2R_15054324_SNP [dm6]	C	T	1.823e^-4	0.921	INTERGENIC
2R	12055904	2R_12055904_SNP [dm3] 2R_16168399_SNP [dm6]	C	T	1.832e^-4	0.921	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	723505	3L_723505_SNP [dm3] 3L_723505_SNP [dm6]	A	T	1.839e^-4	0.921	INTERGENIC
2L	16390598	2L_16390598_SNP [dm3] 2L_16390598_SNP [dm6]	A	G	1.847e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	13945475	2R_13945475_SNP [dm3] 2R_18057970_SNP [dm6]	C	A	1.857e^-4	0.921	UPSTREAM CG10912 EXON CR45314
3L	12569553	3L_12569553_SNP [dm3] 3L_12576453_SNP [dm6]	G	A	1.858e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3L	4392135	3L_4392135_SNP [dm3] 3L_4392135_SNP [dm6]	C	T	1.860e^-4	0.921	INTRON slow	TF binding site mE1_TFBS_cad
3L	4503486	3L_4503486_SNP [dm3] 3L_4503486_SNP [dm6]	G	A	1.866e^-4	0.921	DOWNSTREAM NT1 INTRON NT1
3L	1938427	3L_1938427_SNP [dm3] 3L_1938427_SNP [dm6]	G	A	1.873e^-4	0.921	DOWNSTREAM CR44536 INTRON CG5687
3R	26190347	3R_26190347_SNP [dm3] 3R_30364625_SNP [dm6]	T	C	1.878e^-4	0.921	UTR_3_PRIME hdc
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	1.878e^-4	0.921	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17755476	3R_17755476_SNP [dm3] 3R_21929754_SNP [dm6]	A	T	1.880e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	17319657	3R_17319657_SNP [dm3] 3R_21493935_SNP [dm6]	A	G	1.895e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4352256	3L_4352256_INS [dm3] 3L_4352256_INS [dm6]	T	TT	1.896e^-4	0.921	INTRON Cip4
3L	4352259	3L_4352259_SNP [dm3] 3L_4352259_SNP [dm6]	T	C	1.896e^-4	0.921	INTRON Cip4
3L	6454534	3L_6454534_SNP [dm3] 3L_6461434_SNP [dm6]	C	T	1.909e^-4	0.921	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17755460	3R_17755460_SNP [dm3] 3R_21929738_SNP [dm6]	A	T	1.912e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	6540359	X_6540359_SNP [dm3] X_6646326_SNP [dm6]	G	A	1.912e^-4	0.921	INTRON pigs	TF binding site mE1_TFBS_chinmo
2L	16633942	2L_16633942_SNP [dm3] 2L_16633942_SNP [dm6]	C	T	1.914e^-4	0.921	INTRON CG42389
3L	4499725	3L_4499725_SNP [dm3] 3L_4499725_SNP [dm6]	C	G	1.918e^-4	0.921	SYNONYMOUS_CODING CG13720	TF binding site mE1_TFBS_chinmo
2L	3094279	2L_3094279_SNP [dm3] 2L_3094279_SNP [dm6]	T	G	1.919e^-4	0.921	NON_SYNONYMOUS_CODING toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	14505228	3R_14505228_SNP [dm3] 3R_18679506_SNP [dm6]	G	A	1.922e^-4	0.921	NON_SYNONYMOUS_CODING CG7706
2L	5725494	2L_5725494_SNP [dm3] 2L_5725494_SNP [dm6]	C	T	1.923e^-4	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8679212	2L_8679212_INS [dm3] 2L_8679212_INS [dm6]	T	TT	1.933e^-4	0.921	DOWNSTREAM tRNA:CR31889 INTRON CG9287
X	15731365	X_15731365_SNP [dm3] X_15837332_SNP [dm6]	T	C	1.934e^-4	0.921	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
2R	3614656	2R_3614656_SNP [dm3] 2R_7727151_SNP [dm6]	C	T	1.934e^-4	0.921	UPSTREAM CG18812 INTRON CG18812
2L	18390516	2L_18390516_DEL [dm3] 2L_18390516_DEL [dm6]	TT	T	1.939e^-4	0.921	UTR_3_PRIME Fas3 INTRON Fas3
3L	18839432	3L_18839432_SNP [dm3] 3L_18846332_SNP [dm6]	T	G	1.944e^-4	0.921	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9498329	3R_9498329_SNP [dm3] 3R_13672607_SNP [dm6]	A	T	1.945e^-4	0.921	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	475482	X_475482_SNP [dm3] X_581449_SNP [dm6]	G	A	1.953e^-4	0.921	UPSTREAM vnd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18554140	2R_18554140_SNP [dm3] 2R_22666635_SNP [dm6]	C	T	1.962e^-4	0.921	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 EXON CR42868
2L	10074588	2L_10074588_SNP [dm3] 2L_10074588_SNP [dm6]	T	A	1.964e^-4	0.921	INTRON CG44153
3R	5195462	3R_5195462_SNP [dm3] 3R_9369740_SNP [dm6]	A	G	1.972e^-4	0.921	INTRON FER
3R	11553907	3R_11553907_SNP [dm3] 3R_15728185_SNP [dm6]	A	G	1.974e^-4	0.921	INTERGENIC
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	1.980e^-4	0.921	INTRON gish
3L	14538689	3L_14538689_INS [dm3] 3L_14545589_INS [dm6]	G	GTCTACATG	1.984e^-4	0.921	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	19459362	2L_19459362_SNP [dm3] 2L_19459362_SNP [dm6]	A	G	1.985e^-4	0.921	INTERGENIC
2L	4004555	2L_4004555_SNP [dm3] 2L_4004555_SNP [dm6]	C	T	1.996e^-4	0.921	UPSTREAM CG15422 DOWNSTREAM CG34176 INTERGENIC
2L	7408864	2L_7408864_SNP [dm3] 2L_7408864_SNP [dm6]	A	T	2.007e^-4	0.921	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2L	7408876	2L_7408876_SNP [dm3] 2L_7408876_SNP [dm6]	A	T	2.007e^-4	0.921	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	2.013e^-4	0.921	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2746294	2L_2746294_SNP [dm3] 2L_2746294_SNP [dm6]	G	A	2.014e^-4	0.921	NON_SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
3R	14203557	3R_14203557_DEL [dm3] 3R_18377835_DEL [dm6]	GTGA	G	2.015e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	9808604	3L_9808604_SNP [dm3] 3L_9815504_SNP [dm6]	T	G	2.027e^-4	0.921	UPSTREAM CG43897 INTRON CG43897
3R	14201183	3R_14201183_SNP [dm3] 3R_18375461_SNP [dm6]	C	T	2.028e^-4	0.921	EXON CR44946
3R	14201663	3R_14201663_SNP [dm3] 3R_18375941_SNP [dm6]	G	A	2.034e^-4	0.921	EXON CR44946
X	20903108	X_20903108_SNP [dm3] X_21032081_SNP [dm6]	C	T	2.035e^-4	0.921	UPSTREAM CG1529 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16615946	X_16615946_SNP [dm3] X_16721913_SNP [dm6]	T	C	2.037e^-4	0.921	UPSTREAM CG34325 INTRON CG32572
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	2.041e^-4	0.921	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
3R	14201154	3R_14201154_SNP [dm3] 3R_18375432_SNP [dm6]	A	C	2.042e^-4	0.921	EXON CR44946
2L	19379226	2L_19379226_SNP [dm3] 2L_19379226_SNP [dm6]	A	G	2.046e^-4	0.921	INTERGENIC
2L	10124722	2L_10124722_DEL [dm3] 2L_10124722_DEL [dm6]	CCGCTGCAGAGC...	C	2.048e^-4	0.921	INTRON CG44153 & 1 other
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	2.051e^-4	0.921	INTERGENIC
X	11420770	X_11420770_SNP [dm3] X_11526737_SNP [dm6]	A	T	2.058e^-4	0.921	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	10112028	2R_10112028_SNP [dm3] 2R_14224523_SNP [dm6]	A	G	2.060e^-4	0.921	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12736367	2R_12736367_DEL [dm3] 2R_16848862_DEL [dm6]	TT	T	2.065e^-4	0.921	UPSTREAM CR44467 INTERGENIC
2R	11636922	2R_11636922_SNP [dm3] 2R_15749417_SNP [dm6]	A	T	2.065e^-4	0.921	INTRON CG30089
3L	15607775	3L_15607775_SNP [dm3] 3L_15614675_SNP [dm6]	G	C	2.068e^-4	0.921	INTRON comm3
X	8776719	X_8776719_SNP [dm3] X_8882686_SNP [dm6]	A	C	2.071e^-4	0.921	INTRON Moe
2L	2614760	2L_2614760_DEL [dm3] 2L_2614760_DEL [dm6]	CT	C	2.073e^-4	0.921	INTERGENIC
2L	7146156	2L_7146156_SNP [dm3] 2L_7146156_SNP [dm6]	A	C	2.076e^-4	0.921	DOWNSTREAM CR44612 INTRON Pvf3
3L	10861901	3L_10861901_SNP [dm3] 3L_10868801_SNP [dm6]	T	A	2.083e^-4	0.921	INTRON tna
3L	16446191	3L_16446191_SNP [dm3] 3L_16453091_SNP [dm6]	A	T	2.091e^-4	0.921	INTRON CG33158
2R	13099289	2R_13099289_SNP [dm3] 2R_17211784_SNP [dm6]	G	A	2.095e^-4	0.921	INTERGENIC
2R	6852031	2R_6852031_SNP [dm3] 2R_10964526_SNP [dm6]	C	T	2.098e^-4	0.921	INTERGENIC
2L	22054590	2L_22054590_SNP [dm3] 2L_22054590_SNP [dm6]	C	A	2.105e^-4	0.921	UPSTREAM CG34173 INTERGENIC
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	2.110e^-4	0.921	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20627462	2R_20627462_SNP [dm3] 2R_24739939_SNP [dm6]	C	T	2.117e^-4	0.921	UPSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6436402	3L_6436402_SNP [dm3] 3L_6443302_SNP [dm6]	T	G	2.120e^-4	0.921	INTRON CG42747
3R	10057637	3R_10057637_SNP [dm3] 3R_14231915_SNP [dm6]	T	C	2.122e^-4	0.921	INTERGENIC
X	20908448	X_20908448_SNP [dm3] X_21037421_SNP [dm6]	G	A	2.132e^-4	0.921	INTRON Ntf-2
2L	16314907	2L_16314907_DEL [dm3] 2L_16314907_DEL [dm6]	AGA	A	2.134e^-4	0.921	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15796036	X_15796036_SNP [dm3] X_15902003_SNP [dm6]	G	A	2.135e^-4	0.921	SYNONYMOUS_CODING shi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	2.136e^-4	0.921	INTERGENIC
X	12104299	X_12104299_SNP [dm3] X_12210266_SNP [dm6]	G	A	2.142e^-4	0.921	INTRON Ten-a
3L	4487401	3L_4487401_SNP [dm3] 3L_4487401_SNP [dm6]	G	T	2.151e^-4	0.921	SYNONYMOUS_CODING CG13722
X	7978741	X_7978741_SNP [dm3] X_8084708_SNP [dm6]	C	T	2.160e^-4	0.921	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7549079	3L_7549079_SNP [dm3] 3L_7555979_SNP [dm6]	A	T	2.163e^-4	0.921	SYNONYMOUS_CODING CG14837
X	5258167	X_5258167_SNP [dm3] X_5364134_SNP [dm6]	A	T	2.165e^-4	0.921	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4048848	2R_4048848_SNP [dm3] 2R_8161343_SNP [dm6]	C	T	2.166e^-4	0.921	UPSTREAM CG8708 DOWNSTREAM RagC-D INTRON CG8708
2L	16634994	2L_16634994_SNP [dm3] 2L_16634994_SNP [dm6]	A	T	2.167e^-4	0.921	INTRON CG42389
2L	2747283	2L_2747283_SNP [dm3] 2L_2747283_SNP [dm6]	G	T	2.184e^-4	0.921	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16213071	2L_16213071_SNP [dm3] 2L_16213071_SNP [dm6]	A	G	2.192e^-4	0.921	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
3L	3549876	3L_3549876_SNP [dm3] 3L_3549876_SNP [dm6]	A	G	2.199e^-4	0.921	INTRON Eip63E
2L	5623543	2L_5623543_SNP [dm3] 2L_5623543_SNP [dm6]	A	G	2.203e^-4	0.921	SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6038004	2R_6038004_SNP [dm3] 2R_10150499_SNP [dm6]	T	A	2.209e^-4	0.921	INTRON KCNQ
2R	7857197	2R_7857197_SNP [dm3] 2R_11969692_SNP [dm6]	G	A	2.215e^-4	0.921	UPSTREAM PI31 & 1 other INTRON PI31	TF binding site BDTNP1_TFBS_dl
3L	6436460	3L_6436460_SNP [dm3] 3L_6443360_SNP [dm6]	T	C	2.226e^-4	0.921	INTRON CG42747
3R	19128295	3R_19128295_INS [dm3] 3R_23302573_INS [dm6]	G	GA	2.227e^-4	0.921	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	13064376	X_13064376_SNP [dm3] X_13170343_SNP [dm6]	A	T	2.227e^-4	0.921	SPLICE_SITE_REGION CG34411 INTRON CG34411
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	2.234e^-4	0.921	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5849022	X_5849022_SNP [dm3] X_5954989_SNP [dm6]	T	C	2.240e^-4	0.921	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
3L	10296688	3L_10296688_SNP [dm3] 3L_10303588_SNP [dm6]	C	A	2.244e^-4	0.921	INTERGENIC
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	2.257e^-4	0.921	DOWNSTREAM CG44153 & 1 other INTERGENIC
2R	1704255	2R_1704255_SNP [dm3] 2R_5816750_SNP [dm6]	G	A	2.272e^-4	0.921	INTRON dpr12
X	18881831	X_18881831_INS [dm3] X_18987798_INS [dm6]	A	AGATACTCGCACACAA...	2.275e^-4	0.921	INTRON CG43759
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	2.278e^-4	0.921	INTRON CngA	TF binding site mE1_TFBS_inv
2R	16523072	2R_16523072_SNP [dm3] 2R_20635567_SNP [dm6]	G	A	2.282e^-4	0.921	SYNONYMOUS_CODING rig UPSTREAM CG13436	TF binding site mE1_TFBS_cad
2R	10864005	2R_10864005_SNP [dm3] 2R_14976500_SNP [dm6]	C	T	2.283e^-4	0.921	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19549079	3L_19549079_SNP [dm3] 3L_19555979_SNP [dm6]	A	C	2.301e^-4	0.921	EXON CR44677	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	15014526	2L_15014526_SNP [dm3] 2L_15014526_SNP [dm6]	A	G	2.304e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7137080	3L_7137080_SNP [dm3] 3L_7143980_SNP [dm6]	G	A	2.309e^-4	0.921	SYNONYMOUS_CODING corn UTR_3_PRIME corn DOWNSTREAM melt & 1 other
X	6603319	X_6603319_SNP [dm3] X_6709286_SNP [dm6]	T	A	2.310e^-4	0.921	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11454341	3R_11454341_SNP [dm3] 3R_15628619_SNP [dm6]	C	T	2.319e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
X	21211344	X_21211344_SNP [dm3] X_21340317_SNP [dm6]	G	A	2.330e^-4	0.921	SYNONYMOUS_CODING fliI UPSTREAM tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19415926	2R_19415926_SNP [dm3] 2R_23528403_SNP [dm6]	G	A	2.339e^-4	0.921	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2L	3876183	2L_3876183_SNP [dm3] 2L_3876183_SNP [dm6]	T	G	2.340e^-4	0.921	INTRON capu
2L	8681541	2L_8681541_SNP [dm3] 2L_8681541_SNP [dm6]	T	C	2.343e^-4	0.921	SYNONYMOUS_CODING CG9289	TF binding site mE1_TFBS_cad
3L	17491244	3L_17491244_SNP [dm3] 3L_17498144_SNP [dm6]	C	G	2.373e^-4	0.921	INTRON Oatp74D
3L	12180244	3L_12180244_SNP [dm3] 3L_12187144_SNP [dm6]	C	G	2.384e^-4	0.921	INTRON CG6910	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
3L	3172894	3L_3172894_SNP [dm3] 3L_3172894_SNP [dm6]	A	G	2.385e^-4	0.921	UTR_3_PRIME CG14964 UPSTREAM CG14963
X	15731730	X_15731730_SNP [dm3] X_15837697_SNP [dm6]	T	C	2.388e^-4	0.921	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
3L	5026885	3L_5026885_SNP [dm3] 3L_5026885_SNP [dm6]	G	A	2.402e^-4	0.921	INTRON Con
2R	16131913	2R_16131913_SNP [dm3] 2R_20244408_SNP [dm6]	G	A	2.409e^-4	0.921	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	4156517	2L_4156517_SNP [dm3] 2L_4156517_SNP [dm6]	G	A	2.413e^-4	0.921	INTERGENIC
X	16727276	X_16727276_SNP [dm3] X_16833243_SNP [dm6]	C	G	2.415e^-4	0.921	INTRON CG13004
2L	8685939	2L_8685939_SNP [dm3] 2L_8685939_SNP [dm6]	G	A	2.417e^-4	0.921	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	9200194	3L_9200194_SNP [dm3] 3L_9207094_SNP [dm6]	G	T	2.427e^-4	0.921	UPSTREAM Slc45-1 INTRON Slc45-1
3R	14445151	3R_14445151_SNP [dm3] 3R_18619429_SNP [dm6]	T	C	2.431e^-4	0.921	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
2R	7106255	2R_7106255_SNP [dm3] 2R_11218750_SNP [dm6]	C	T	2.447e^-4	0.921	UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8561070	X_8561070_SNP [dm3] X_8667037_SNP [dm6]	C	A	2.448e^-4	0.921	INTERGENIC
3L	6134100	3L_6134100_INS [dm3] 3L_6141000_INS [dm6]	A	AAAAACGATTTTTTTA...	2.450e^-4	0.921	DOWNSTREAM Cpr65Aw INTERGENIC
3R	14510315	3R_14510315_SNP [dm3] 3R_18684593_SNP [dm6]	C	A	2.450e^-4	0.921	SYNONYMOUS_CODING CG7708
2L	20145317	2L_20145317_SNP [dm3] 2L_20145317_SNP [dm6]	C	T	2.451e^-4	0.921	INTERGENIC
3R	25944442	3R_25944442_SNP [dm3] 3R_30118720_SNP [dm6]	C	T	2.451e^-4	0.921	INTRON sima	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14998210	2L_14998210_SNP [dm3] 2L_14998210_SNP [dm6]	T	A	2.453e^-4	0.921	UPSTREAM mol INTERGENIC
3R	19340495	3R_19340495_SNP [dm3] 3R_23514773_SNP [dm6]	T	C	2.471e^-4	0.921	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15986352	2R_15986352_SNP [dm3] 2R_20098847_SNP [dm6]	G	A	2.473e^-4	0.921	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	2739973	2L_2739973_SNP [dm3] 2L_2739973_SNP [dm6]	T	A	2.474e^-4	0.921	UPSTREAM Hrs DOWNSTREAM CG31689 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16522880	2R_16522880_SNP [dm3] 2R_20635375_SNP [dm6]	A	T	2.474e^-4	0.921	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	11610863	2R_11610863_SNP [dm3] 2R_15723358_SNP [dm6]	A	G	2.490e^-4	0.921	INTERGENIC
X	5256900	X_5256900_SNP [dm3] X_5362867_SNP [dm6]	A	T	2.498e^-4	0.921	INTRON SK
2L	17035446	2L_17035446_SNP [dm3] 2L_17035446_SNP [dm6]	C	T	2.506e^-4	0.921	INTERGENIC
X	6543756	X_6543756_SNP [dm3] X_6649723_SNP [dm6]	T	A	2.513e^-4	0.921	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12721115	3L_12721115_SNP [dm3] 3L_12728015_SNP [dm6]	T	A	2.515e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7280440	3L_7280440_SNP [dm3] 3L_7287340_SNP [dm6]	G	A	2.520e^-4	0.921	INTRON unc-13-4A
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	2.520e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1914879	3L_1914879_SNP [dm3] 3L_1914879_SNP [dm6]	G	T	2.537e^-4	0.921	INTERGENIC
2R	17331219	2R_17331219_INS [dm3] 2R_21443714_INS [dm6]	A	AG	2.542e^-4	0.921	INTRON Sdc
2R	6451052	2R_6451052_SNP [dm3] 2R_10563547_SNP [dm6]	A	G	2.552e^-4	0.921	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23230851	3R_23230851_SNP [dm3] 3R_27405129_SNP [dm6]	C	T	2.568e^-4	0.921	INTRON side
3R	14203581	3R_14203581_SNP [dm3] 3R_18377859_SNP [dm6]	T	C	2.575e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	4487336	3L_4487336_SNP [dm3] 3L_4487336_SNP [dm6]	A	G	2.575e^-4	0.921	NON_SYNONYMOUS_CODING CG13722
2R	15986227	2R_15986227_SNP [dm3] 2R_20098722_SNP [dm6]	C	T	2.582e^-4	0.921	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	8685938	2L_8685938_SNP [dm3] 2L_8685938_SNP [dm6]	C	A	2.583e^-4	0.921	START_GAINED PrBP UTR_5_PRIME PrBP UPSTREAM Trs23	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22284409	3R_22284409_SNP [dm3] 3R_26458687_SNP [dm6]	A	G	2.600e^-4	0.921	INTRON CG14238
3L	9037791	3L_9037791_SNP [dm3] 3L_9044691_SNP [dm6]	C	A	2.621e^-4	0.921	NON_SYNONYMOUS_CODING Doc1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5725387	2L_5725387_SNP [dm3] 2L_5725387_SNP [dm6]	G	T	2.623e^-4	0.921	INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14203596	3R_14203596_SNP [dm3] 3R_18377874_SNP [dm6]	G	A	2.625e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	11737390	3L_11737390_SNP [dm3] 3L_11744290_SNP [dm6]	C	T	2.631e^-4	0.921	INTRON CG6024
3R	14203222	3R_14203222_SNP [dm3] 3R_18377500_SNP [dm6]	G	A	2.636e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC
2R	15316570	2R_15316570_SNP [dm3] 2R_19429065_SNP [dm6]	A	G	2.637e^-4	0.921	DOWNSTREAM CalpA INTRON CalpA
2R	12333720	2R_12333720_SNP [dm3] 2R_16446215_SNP [dm6]	T	A	2.647e^-4	0.921	UTR_5_PRIME CG15925
3L	7742779	3L_7742779_SNP [dm3] 3L_7749679_SNP [dm6]	C	G	2.650e^-4	0.921	UTR_3_PRIME CG13685 INTRON CG32373
3L	13407492	3L_13407492_SNP [dm3] 3L_13414392_SNP [dm6]	A	G	2.651e^-4	0.921	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
3L	12153105	3L_12153105_SNP [dm3] 3L_12160005_SNP [dm6]	A	T	2.656e^-4	0.921	INTRON CG9760
X	3351110	X_3351110_SNP [dm3] X_3457077_SNP [dm6]	G	T	2.660e^-4	0.921	INTRON CR44999
2R	1969063	2R_1969063_SNP [dm3] 2R_6081558_SNP [dm6]	T	C	2.666e^-4	0.921	UPSTREAM CG14590 INTRON Ars2
2L	12533450	2L_12533450_SNP [dm3] 2L_12533450_SNP [dm6]	G	T	2.666e^-4	0.921	INTRON bun
X	6539889	X_6539889_SNP [dm3] X_6645856_SNP [dm6]	G	A	2.667e^-4	0.921	INTRON pigs
2R	11167036	2R_11167036_SNP [dm3] 2R_15279531_SNP [dm6]	G	T	2.671e^-4	0.921	INTRON Trpm
3R	15650407	3R_15650407_SNP [dm3] 3R_19824685_SNP [dm6]	C	A	2.674e^-4	0.921	INTRON bnl
3L	9591541	3L_9591541_SNP [dm3] 3L_9598441_SNP [dm6]	A	T	2.687e^-4	0.921	UPSTREAM CG3222 DOWNSTREAM CG14177 INTERGENIC
X	4734567	X_4734567_SNP [dm3] X_4840534_SNP [dm6]	G	A	2.690e^-4	0.921	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17416408	2R_17416408_SNP [dm3] 2R_21528903_SNP [dm6]	C	T	2.696e^-4	0.921	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15733233	2R_15733233_SNP [dm3] 2R_19845728_SNP [dm6]	G	A	2.700e^-4	0.921	INTERGENIC
X	8096264	X_8096264_SNP [dm3] X_8202231_SNP [dm6]	T	C	2.708e^-4	0.921	INTRON sdt	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	19830996	2R_19830996_SNP [dm3] 2R_23943473_SNP [dm6]	C	T	2.718e^-4	0.921	UPSTREAM Galphas INTRON Galphas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13778161	3L_13778161_SNP [dm3] 3L_13785061_SNP [dm6]	A	C	2.722e^-4	0.921	INTRON bru-3
X	3743009	X_3743009_SNP [dm3] X_3848976_SNP [dm6]	T	G	2.729e^-4	0.921	INTRON ec	TF binding site BDTNP1_TFBS_dl
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	2.736e^-4	0.921	INTRON pum
3L	13981852	3L_13981852_DEL [dm3] 3L_13988752_DEL [dm6]	GG	A	2.738e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
3L	4505772	3L_4505772_SNP [dm3] 3L_4505772_SNP [dm6]	G	A	2.743e^-4	0.921	SYNONYMOUS_CODING NT1
2L	20072274	2L_20072274_SNP [dm3] 2L_20072274_SNP [dm6]	G	A	2.745e^-4	0.921	UPSTREAM CG10730 INTRON bwa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13026115	X_13026115_SNP [dm3] X_13132082_SNP [dm6]	T	G	2.746e^-4	0.921	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26788122	3R_26788122_DEL [dm3] 3R_30962400_DEL [dm6]	CAG	C	2.746e^-4	0.921	DOWNSTREAM Ctr1C & 1 other INTERGENIC
2L	21820320	2L_21820320_SNP [dm3] 2L_21820320_SNP [dm6]	A	T	2.750e^-4	0.921	EXON CR44786
3L	7439057	3L_7439057_SNP [dm3] 3L_7445957_SNP [dm6]	A	G	2.752e^-4	0.921	INTRON CG42458
2L	8686189	2L_8686189_SNP [dm3] 2L_8686189_SNP [dm6]	T	G	2.753e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7092422	3R_7092422_SNP [dm3] 3R_11266700_SNP [dm6]	T	A	2.755e^-4	0.921	INTERGENIC
2R	10137440	2R_10137440_SNP [dm3] 2R_14249935_SNP [dm6]	C	T	2.759e^-4	0.921	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	16288951	3R_16288951_SNP [dm3] 3R_20463229_SNP [dm6]	T	C	2.762e^-4	0.921	INTRON Gfrl
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	2.768e^-4	0.921	INTRON CG42534
3L	12569543	3L_12569543_SNP [dm3] 3L_12576443_SNP [dm6]	C	T	2.769e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2R	6038024	2R_6038024_SNP [dm3] 2R_10150519_SNP [dm6]	G	A	2.770e^-4	0.921	INTRON KCNQ
3L	13981864	3L_13981864_SNP [dm3] 3L_13988764_SNP [dm6]	T	C	2.773e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	2.798e^-4	0.921	INTRON 5-HT1A
2R	10938324	2R_10938324_SNP [dm3] 2R_15050819_SNP [dm6]	T	C	2.803e^-4	0.921	UPSTREAM CR43622 INTERGENIC	TF binding site mE1_TFBS_inv
X	7223631	X_7223631_SNP [dm3] X_7329598_SNP [dm6]	C	T	2.807e^-4	0.921	SYNONYMOUS_CODING CG18155 DOWNSTREAM Dok INTRON CR44357 & 1 other
2R	16132293	2R_16132293_SNP [dm3] 2R_20244788_SNP [dm6]	C	G	2.814e^-4	0.921	DOWNSTREAM ppk6 INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3991828	3L_3991828_SNP [dm3] 3L_3991828_SNP [dm6]	T	G	2.818e^-4	0.921	UTR_3_PRIME scrt
2L	1606423	2L_1606423_SNP [dm3] 2L_1606423_SNP [dm6]	C	T	2.823e^-4	0.921	SYNONYMOUS_CODING haf INTRON CG31935
2L	15164140	2L_15164140_SNP [dm3] 2L_15164140_SNP [dm6]	A	G	2.828e^-4	0.921	INTRON CG4168
3L	4499783	3L_4499783_SNP [dm3] 3L_4499783_SNP [dm6]	T	C	2.833e^-4	0.921	NON_SYNONYMOUS_CODING CG13720	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17491236	3L_17491236_SNP [dm3] 3L_17498136_SNP [dm6]	G	T	2.834e^-4	0.921	INTRON Oatp74D
3L	4487402	3L_4487402_SNP [dm3] 3L_4487402_SNP [dm6]	G	T	2.835e^-4	0.921	NON_SYNONYMOUS_CODING CG13722
3R	10963512	3R_10963512_SNP [dm3] 3R_15137790_SNP [dm6]	C	G	2.836e^-4	0.921	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4503507	3L_4503507_SNP [dm3] 3L_4503507_SNP [dm6]	C	T	2.848e^-4	0.921	DOWNSTREAM NT1 INTRON NT1
X	3786092	X_3786092_INS [dm3] X_3892059_INS [dm6]	G	GG	2.848e^-4	0.921	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
3R	25126642	3R_25126642_SNP [dm3] 3R_29300920_SNP [dm6]	A	G	2.855e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	6451850	X_6451850_SNP [dm3] X_6557817_SNP [dm6]	C	T	2.858e^-4	0.921	SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	2.860e^-4	0.921	INTRON pnt
3L	6501408	3L_6501408_SNP [dm3] 3L_6508308_SNP [dm6]	G	A	2.867e^-4	0.921	INTRON sfl
2L	8686101	2L_8686101_SNP [dm3] 2L_8686101_SNP [dm6]	A	G	2.872e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12180243	3L_12180243_SNP [dm3] 3L_12187143_SNP [dm6]	T	A	2.885e^-4	0.921	INTRON CG6910	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad
2R	18151311	2R_18151311_SNP [dm3] 2R_22263806_SNP [dm6]	A	G	2.886e^-4	0.921	INTRON dve
3R	14203579	3R_14203579_INS [dm3] 3R_18377857_INS [dm6]	T	TGA	2.889e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	14203584	3R_14203584_DEL [dm3] 3R_18377862_DEL [dm6]	AAT	GG	2.889e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	14203590	3R_14203590_SNP [dm3] 3R_18377868_SNP [dm6]	T	C	2.889e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	14203591	3R_14203591_DEL [dm3] 3R_18377869_DEL [dm6]	AT	A	2.889e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
X	20707449	X_20707449_SNP [dm3] X_20836422_SNP [dm6]	T	G	2.889e^-4	0.921	INTRON shakB
3L	18322260	3L_18322260_SNP [dm3] 3L_18329160_SNP [dm6]	C	A	2.890e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18603924	3L_18603924_SNP [dm3] 3L_18610824_SNP [dm6]	G	A	2.896e^-4	0.921	SYNONYMOUS_CODING CG32201 INTRON CG4174 & 1 other
3R	5774556	3R_5774556_INS [dm3] 3R_9948834_INS [dm6]	T	TTCAGCT	2.897e^-4	0.921	INTRON Glut4EF
2L	15289837	2L_15289837_SNP [dm3] 2L_15289837_SNP [dm6]	C	T	2.899e^-4	0.921	INTERGENIC
3R	11599531	3R_11599531_SNP [dm3] 3R_15773809_SNP [dm6]	T	A	2.904e^-4	0.921	UPSTREAM CG4525 DOWNSTREAM CR45206 & 1 other INTERGENIC
2R	10599846	2R_10599846_SNP [dm3] 2R_14712341_SNP [dm6]	G	A	2.914e^-4	0.921	INTRON mspo
2R	14945717	2R_14945717_SNP [dm3] 2R_19058212_SNP [dm6]	A	G	2.927e^-4	0.921	INTERGENIC
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	2.937e^-4	0.921	INTRON tok EXON snoRNA:Me18S-C1280
2R	9908840	2R_9908840_SNP [dm3] 2R_14021335_SNP [dm6]	G	A	2.946e^-4	0.921	INTRON mam
2R	10111648	2R_10111648_SNP [dm3] 2R_14224143_SNP [dm6]	A	G	2.949e^-4	0.921	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3740597	2L_3740597_SNP [dm3] 2L_3740597_SNP [dm6]	G	C	2.952e^-4	0.921	INTRON CG10019
2L	6086972	2L_6086972_DEL [dm3] 2L_6086972_DEL [dm6]	CGTC	C	2.956e^-4	0.921	INTRON Kr-h1
3R	23945447	3R_23945447_SNP [dm3] 3R_28119725_SNP [dm6]	C	G	2.966e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7745882	3L_7745882_SNP [dm3] 3L_7752782_SNP [dm6]	C	T	2.975e^-4	0.921	INTRON CG32373
X	6451064	X_6451064_SNP [dm3] X_6557031_SNP [dm6]	G	T	2.977e^-4	0.921	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	2.990e^-4	0.921	INTERGENIC
2R	11436685	2R_11436685_SNP [dm3] 2R_15549180_SNP [dm6]	C	A	2.998e^-4	0.921	INTRON CG8192	TF binding site BDTNP1_TFBS_z
3L	6436407	3L_6436407_SNP [dm3] 3L_6443307_SNP [dm6]	T	C	3.000e^-4	0.921	INTRON CG42747
3L	6436408	3L_6436408_SNP [dm3] 3L_6443308_SNP [dm6]	T	C	3.000e^-4	0.921	INTRON CG42747
X	8958326	X_8958326_SNP [dm3] X_9064293_SNP [dm6]	T	C	3.001e^-4	0.921	INTRON CG15365
3R	27595300	3R_27595300_SNP [dm3] 3R_31769578_SNP [dm6]	G	A	3.003e^-4	0.921	SYNONYMOUS_CODING CG2135 DOWNSTREAM pncr017:3R
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	3.004e^-4	0.921	INTERGENIC
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	3.024e^-4	0.921	INTRON fas
3R	21738131	3R_21738131_SNP [dm3] 3R_25912409_SNP [dm6]	C	T	3.028e^-4	0.921	SYNONYMOUS_CODING CG42235 INTRON CG42235
3R	13724913	3R_13724913_SNP [dm3] 3R_17899191_SNP [dm6]	C	A	3.044e^-4	0.921	INTRON Rim
3L	4488389	3L_4488389_SNP [dm3] 3L_4488389_SNP [dm6]	G	C	3.053e^-4	0.921	INTRON CG13722
3L	4579953	3L_4579953_SNP [dm3] 3L_4579953_SNP [dm6]	G	A	3.054e^-4	0.921	INTRON CG42540
2R	9101091	2R_9101091_DEL [dm3] 2R_13213586_DEL [dm6]	TTGTAT	T	3.056e^-4	0.921	INTRON AQP
2R	9101103	2R_9101103_SNP [dm3] 2R_13213598_SNP [dm6]	C	G	3.056e^-4	0.921	INTRON AQP
X	10447044	X_10447044_DEL [dm3] X_10553011_DEL [dm6]	GTT	A	3.058e^-4	0.921	INTRON spri
2R	7938226	2R_7938226_SNP [dm3] 2R_12050721_SNP [dm6]	G	A	3.076e^-4	0.921	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
2R	14850681	2R_14850681_SNP [dm3] 2R_18963176_SNP [dm6]	A	C	3.081e^-4	0.921	INTERGENIC
2R	16948955	2R_16948955_SNP [dm3] 2R_21061450_SNP [dm6]	T	C	3.087e^-4	0.921	UTR_3_PRIME mRpL54 UPSTREAM CG15653 & 1 other	TF binding site mE1_TFBS_sens
3R	22270658	3R_22270658_SNP [dm3] 3R_26444936_SNP [dm6]	G	A	3.087e^-4	0.921	INTRON tx
3L	10897677	3L_10897677_SNP [dm3] 3L_10904577_SNP [dm6]	G	A	3.093e^-4	0.921	INTERGENIC
2L	8418378	2L_8418378_SNP [dm3] 2L_8418378_SNP [dm6]	T	C	3.094e^-4	0.921	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	12153142	3L_12153142_SNP [dm3] 3L_12160042_SNP [dm6]	C	T	3.096e^-4	0.921	INTRON CG9760
3L	1817783	3L_1817783_SNP [dm3] 3L_1817783_SNP [dm6]	A	T	3.099e^-4	0.921	INTRON GV1
3L	7560256	3L_7560256_SNP [dm3] 3L_7567156_SNP [dm6]	G	A	3.103e^-4	0.921	NON_SYNONYMOUS_CODING frac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16555349	3L_16555349_SNP [dm3] 3L_16562249_SNP [dm6]	T	A	3.105e^-4	0.921	INTERGENIC
3R	11311255	3R_11311255_SNP [dm3] 3R_15485533_SNP [dm6]	A	G	3.107e^-4	0.921	SYNONYMOUS_CODING Trissin UPSTREAM CG5205 & 1 other DOWNSTREAM Rh6	TF binding site mE1_TFBS_HSA
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	3.113e^-4	0.921	DOWNSTREAM CG14476 INTERGENIC
2L	4156555	2L_4156555_SNP [dm3] 2L_4156555_SNP [dm6]	G	T	3.117e^-4	0.921	INTERGENIC
2R	9692780	2R_9692780_SNP [dm3] 2R_13805275_SNP [dm6]	T	A	3.118e^-4	0.921	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
2L	1642380	2L_1642380_SNP [dm3] 2L_1642380_SNP [dm6]	G	T	3.123e^-4	0.921	INTERGENIC
2R	11797835	2R_11797835_SNP [dm3] 2R_15910330_SNP [dm6]	C	T	3.126e^-4	0.921	INTRON sli	TF binding site mE1_TFBS_inv
2R	9509648	2R_9509648_SNP [dm3] 2R_13622143_SNP [dm6]	C	T	3.127e^-4	0.921	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2L	6397567	2L_6397567_SNP [dm3] 2L_6397567_SNP [dm6]	T	A	3.132e^-4	0.921	UPSTREAM CG42369 INTRON CG42368
3R	19126535	3R_19126535_SNP [dm3] 3R_23300813_SNP [dm6]	T	C	3.139e^-4	0.921	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8930963	2R_8930963_SNP [dm3] 2R_13043458_SNP [dm6]	A	C	3.140e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_h
2L	15163297	2L_15163297_SNP [dm3] 2L_15163297_SNP [dm6]	C	T	3.144e^-4	0.921	UTR_3_PRIME CG4168
2L	16470704	2L_16470704_DEL [dm3] 2L_16470704_DEL [dm6]	TT	T	3.145e^-4	0.921	INTRON dac	regulatory region REDfly_CRMs
X	7223640	X_7223640_SNP [dm3] X_7329607_SNP [dm6]	G	C	3.147e^-4	0.921	SYNONYMOUS_CODING CG18155 DOWNSTREAM Dok INTRON CR44357 & 1 other
X	9215840	X_9215840_SNP [dm3] X_9321807_SNP [dm6]	G	A	3.152e^-4	0.921	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9821632	2L_9821632_SNP [dm3] 2L_9821632_SNP [dm6]	G	A	3.153e^-4	0.921	INTRON nAChRalpha6
2R	16585879	2R_16585879_SNP [dm3] 2R_20698374_SNP [dm6]	T	A	3.163e^-4	0.921	UPSTREAM dpr INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20388289	2L_20388289_SNP [dm3] 2L_20388289_SNP [dm6]	T	C	3.172e^-4	0.921	INTRON CG10947
3R	14510303	3R_14510303_SNP [dm3] 3R_18684581_SNP [dm6]	G	T	3.186e^-4	0.921	SYNONYMOUS_CODING CG7708
X	4478035	X_4478035_SNP [dm3] X_4584002_SNP [dm6]	T	A	3.189e^-4	0.921	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12536532	2R_12536532_SNP [dm3] 2R_16649027_SNP [dm6]	T	A	3.191e^-4	0.921	UTR_3_PRIME gprs DOWNSTREAM gprs INTRON gprs
2R	6084117	2R_6084117_SNP [dm3] 2R_10196612_SNP [dm6]	G	C	3.206e^-4	0.921	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	14998218	2L_14998218_SNP [dm3] 2L_14998218_SNP [dm6]	G	C	3.206e^-4	0.921	UPSTREAM mol INTERGENIC
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	3.209e^-4	0.921	INTRON gish
2L	3758695	2L_3758695_SNP [dm3] 2L_3758695_SNP [dm6]	C	T	3.213e^-4	0.921	INTRON CG43707
2L	8684265	2L_8684265_SNP [dm3] 2L_8684265_SNP [dm6]	G	A	3.214e^-4	0.921	NON_SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other	TF binding site mE1_TFBS_sens
2R	10287919	2R_10287919_SNP [dm3] 2R_14400414_SNP [dm6]	T	A	3.215e^-4	0.921	INTERGENIC
3L	6978222	3L_6978222_SNP [dm3] 3L_6985122_SNP [dm6]	T	A	3.226e^-4	0.921	UPSTREAM CG32388 & 1 other INTERGENIC
2R	9757210	2R_9757210_INS [dm3] 2R_13869705_INS [dm6]	T	TGATT	3.227e^-4	0.921	INTRON shot
X	5256863	X_5256863_DEL [dm3] X_5362830_DEL [dm6]	TTAGTTT	T	3.227e^-4	0.921	INTRON SK
3R	18702021	3R_18702021_SNP [dm3] 3R_22876299_SNP [dm6]	A	G	3.230e^-4	0.921	INTERGENIC
2R	18862446	2R_18862446_SNP [dm3] 2R_22974923_SNP [dm6]	G	T	3.237e^-4	0.921	INTERGENIC
3R	18302266	3R_18302266_SNP [dm3] 3R_22476544_SNP [dm6]	G	A	3.237e^-4	0.921	INTRON Nrx-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11797447	2R_11797447_SNP [dm3] 2R_15909942_SNP [dm6]	A	C	3.242e^-4	0.921	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6038026	2R_6038026_SNP [dm3] 2R_10150521_SNP [dm6]	T	C	3.245e^-4	0.921	INTRON KCNQ
3R	24563070	3R_24563070_SNP [dm3] 3R_28737348_SNP [dm6]	G	A	3.247e^-4	0.921	UTR_3_PRIME AstA-R2 DOWNSTREAM AstA-R2
3L	1454591	3L_1454591_SNP [dm3] 3L_1454591_SNP [dm6]	G	T	3.251e^-4	0.921	INTRON Ptp61F	TF binding site BDTNP1_TFBS_twi
3R	6708148	3R_6708148_SNP [dm3] 3R_10882426_SNP [dm6]	C	A	3.261e^-4	0.921	UPSTREAM Tpc1 DOWNSTREAM CG14696 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13408079	3L_13408079_SNP [dm3] 3L_13414979_SNP [dm6]	C	T	3.263e^-4	0.921	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4498398	3L_4498398_INS [dm3] 3L_4498398_INS [dm6]	T	TAGAGATGGGAT...	3.284e^-4	0.921	UPSTREAM CG13721 DOWNSTREAM CG13720 INTERGENIC
2R	18287902	2R_18287902_SNP [dm3] 2R_22400397_SNP [dm6]	C	A	3.292e^-4	0.921	INTRON babos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	18906739	2L_18906739_SNP [dm3] 2L_18906739_SNP [dm6]	G	A	3.302e^-4	0.921	EXON CR44738
2R	6038023	2R_6038023_SNP [dm3] 2R_10150518_SNP [dm6]	C	T	3.307e^-4	0.921	INTRON KCNQ
2L	10477636	2L_10477636_SNP [dm3] 2L_10477636_SNP [dm6]	C	T	3.334e^-4	0.921	INTRON RluA-2	TF binding site mE1_TFBS_ttk
3R	16288968	3R_16288968_SNP [dm3] 3R_20463246_SNP [dm6]	C	T	3.336e^-4	0.921	INTRON Gfrl
X	8561119	X_8561119_SNP [dm3] X_8667086_SNP [dm6]	G	A	3.339e^-4	0.921	INTERGENIC
X	14686898	X_14686898_SNP [dm3] X_14792865_SNP [dm6]	T	A	3.358e^-4	0.921	INTRON rut
2R	14945787	2R_14945787_DEL [dm3] 2R_19058282_DEL [dm6]	ATATGCGAGTATA...	A	3.358e^-4	0.921	INTERGENIC
X	18881504	X_18881504_SNP [dm3] X_18987471_SNP [dm6]	A	G	3.360e^-4	0.921	INTRON CG43759
2L	18906733	2L_18906733_SNP [dm3] 2L_18906733_SNP [dm6]	A	T	3.361e^-4	0.921	EXON CR44738
2R	10239494	2R_10239494_SNP [dm3] 2R_14351989_SNP [dm6]	G	A	3.365e^-4	0.921	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	16615953	X_16615953_SNP [dm3] X_16721920_SNP [dm6]	A	C	3.367e^-4	0.921	UPSTREAM CG34325 INTRON CG32572
2R	14857618	2R_14857618_SNP [dm3] 2R_18970113_SNP [dm6]	A	C	3.369e^-4	0.921	INTRON prod	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16809962	2L_16809962_SNP [dm3] 2L_16809962_SNP [dm6]	C	T	3.370e^-4	0.921	INTRON CG13280 & 1 other
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	3.373e^-4	0.921	INTERGENIC
2L	4156572	2L_4156572_SNP [dm3] 2L_4156572_SNP [dm6]	T	G	3.377e^-4	0.921	INTERGENIC
2L	16294755	2L_16294755_SNP [dm3] 2L_16294755_SNP [dm6]	G	A	3.385e^-4	0.921	SYNONYMOUS_CODING Cyp303a1	TF binding site mE1_TFBS_sens
3L	13974640	3L_13974640_SNP [dm3] 3L_13981540_SNP [dm6]	G	A	3.386e^-4	0.921	UTR_3_PRIME CG17364 INTRON CG17364
2R	17790003	2R_17790003_SNP [dm3] 2R_21902498_SNP [dm6]	C	T	3.390e^-4	0.921	INTRON Fili
3R	8607398	3R_8607398_SNP [dm3] 3R_12781676_SNP [dm6]	C	T	3.399e^-4	0.921	INTRON beat-Vc
2R	5070208	2R_5070208_SNP [dm3] 2R_9182703_SNP [dm6]	G	A	3.412e^-4	0.921	UPSTREAM CR44284 INTRON ltd	TF binding site mE1_TFBS_HSA
2L	7350972	2L_7350972_SNP [dm3] 2L_7350972_SNP [dm6]	G	C	3.420e^-4	0.921	INTRON Wnt6
3R	14203599	3R_14203599_SNP [dm3] 3R_18377877_SNP [dm6]	T	A	3.421e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
2R	16948450	2R_16948450_SNP [dm3] 2R_21060945_SNP [dm6]	G	A	3.421e^-4	0.921	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13981863	3L_13981863_SNP [dm3] 3L_13988763_SNP [dm6]	T	C	3.425e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
2L	20235076	2L_20235076_SNP [dm3] 2L_20235076_SNP [dm6]	T	G	3.426e^-4	0.921	INTERGENIC
2R	6038040	2R_6038040_SNP [dm3] 2R_10150535_SNP [dm6]	C	T	3.432e^-4	0.921	INTRON KCNQ
3L	16744817	3L_16744817_SNP [dm3] 3L_16751717_SNP [dm6]	T	C	3.436e^-4	0.921	INTERGENIC
3R	27588730	3R_27588730_SNP [dm3] 3R_31763008_SNP [dm6]	A	G	3.443e^-4	0.921	DOWNSTREAM CG2150 INTERGENIC
3L	10324776	3L_10324776_SNP [dm3] 3L_10331676_SNP [dm6]	G	A	3.464e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	13981867	3L_13981867_SNP [dm3] 3L_13988767_SNP [dm6]	G	A	3.465e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
X	9215864	X_9215864_SNP [dm3] X_9321831_SNP [dm6]	A	G	3.466e^-4	0.921	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26851272	3R_26851272_SNP [dm3] 3R_31025550_SNP [dm6]	A	C	3.468e^-4	0.921	INTERGENIC
2L	11190159	2L_11190159_SNP [dm3] 2L_11190159_SNP [dm6]	C	T	3.469e^-4	0.921	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3L	13981856	3L_13981856_SNP [dm3] 3L_13988756_SNP [dm6]	A	C	3.481e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
X	4492406	X_4492406_SNP [dm3] X_4598373_SNP [dm6]	C	T	3.484e^-4	0.921	INTRON CR32773
3R	17670672	3R_17670672_SNP [dm3] 3R_21844950_SNP [dm6]	C	T	3.486e^-4	0.921	NON_SYNONYMOUS_CODING Gr93c UPSTREAM CR44087 DOWNSTREAM Gr93d
X	6543405	X_6543405_SNP [dm3] X_6649372_SNP [dm6]	T	C	3.487e^-4	0.921	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10157296	3L_10157296_SNP [dm3] 3L_10164196_SNP [dm6]	A	C	3.490e^-4	0.921	INTRON dpr10
3L	7123059	3L_7123059_SNP [dm3] 3L_7129959_SNP [dm6]	A	C	3.492e^-4	0.921	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC
2L	20142248	2L_20142248_DEL [dm3] 2L_20142248_DEL [dm6]	CCTC	C	3.496e^-4	0.921	INTERGENIC
2L	16213092	2L_16213092_SNP [dm3] 2L_16213092_SNP [dm6]	A	G	3.507e^-4	0.921	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
2R	16692587	2R_16692587_SNP [dm3] 2R_20805082_SNP [dm6]	A	G	3.527e^-4	0.921	INTERGENIC
X	7978465	X_7978465_SNP [dm3] X_8084432_SNP [dm6]	A	T	3.531e^-4	0.921	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
3R	15637840	3R_15637840_SNP [dm3] 3R_19812118_SNP [dm6]	C	T	3.534e^-4	0.921	INTRON bnl
3L	13981920	3L_13981920_SNP [dm3] 3L_13988820_SNP [dm6]	C	T	3.549e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
2L	8681357	2L_8681357_SNP [dm3] 2L_8681357_SNP [dm6]	T	G	3.554e^-4	0.921	UTR_3_PRIME CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	13724743	3R_13724743_SNP [dm3] 3R_17899021_SNP [dm6]	A	C	3.561e^-4	0.921	INTRON Rim
2L	15979103	2L_15979103_SNP [dm3] 2L_15979103_SNP [dm6]	C	T	3.568e^-4	0.921	UPSTREAM CG10839 INTERGENIC
3L	10852534	3L_10852534_SNP [dm3] 3L_10859434_SNP [dm6]	T	C	3.576e^-4	0.921	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
3L	4920903	3L_4920903_SNP [dm3] 3L_4920903_SNP [dm6]	T	G	3.587e^-4	0.921	DOWNSTREAM Rh50 INTERGENIC
3L	13981907	3L_13981907_SNP [dm3] 3L_13988807_SNP [dm6]	C	G	3.588e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
2L	5725597	2L_5725597_SNP [dm3] 2L_5725597_SNP [dm6]	C	T	3.594e^-4	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_HSA
2L	1095468	2L_1095468_SNP [dm3] 2L_1095468_SNP [dm6]	C	T	3.596e^-4	0.921	INTRON CG4629
X	5256390	X_5256390_SNP [dm3] X_5362357_SNP [dm6]	A	G	3.600e^-4	0.921	INTRON SK
3R	12323459	3R_12323459_SNP [dm3] 3R_16497737_SNP [dm6]	A	C	3.601e^-4	0.921	DOWNSTREAM Gr89a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	8776725	X_8776725_INS [dm3] X_8882692_INS [dm6]	C	CCCCTATTC	3.605e^-4	0.921	INTRON Moe
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	3.607e^-4	0.921	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	13491430	3L_13491430_SNP [dm3] 3L_13498330_SNP [dm6]	C	G	3.613e^-4	0.921	INTRON Tgi
2L	20242937	2L_20242937_INS [dm3] 2L_20242937_INS [dm6]	G	GACCTTGTCGTTCTCTTCGC...	3.620e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5849031	X_5849031_SNP [dm3] X_5954998_SNP [dm6]	A	G	3.624e^-4	0.921	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
X	6543727	X_6543727_SNP [dm3] X_6649694_SNP [dm6]	A	G	3.632e^-4	0.921	NON_SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4503501	3L_4503501_SNP [dm3] 3L_4503501_SNP [dm6]	G	C	3.640e^-4	0.921	DOWNSTREAM NT1 INTRON NT1
2R	8668146	2R_8668146_SNP [dm3] 2R_12780641_SNP [dm6]	C	T	3.641e^-4	0.921	UTR_5_PRIME sca	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11136785	3L_11136785_SNP [dm3] 3L_11143685_SNP [dm6]	G	C	3.657e^-4	0.921	INTRON CG32082
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	3.658e^-4	0.921	INTRON Cip4
3L	13169680	3L_13169680_SNP [dm3] 3L_13176580_SNP [dm6]	C	T	3.659e^-4	0.921	SYNONYMOUS_CODING snky
X	21461883	X_21461883_SNP [dm3] X_21590856_SNP [dm6]	A	C	3.666e^-4	0.921	INTERGENIC
3L	4099785	3L_4099785_SNP [dm3] 3L_4099785_SNP [dm6]	T	C	3.669e^-4	0.921	INTRON CG14995	TF binding site mE1_TFBS_inv
2R	11341623	2R_11341623_SNP [dm3] 2R_15454118_SNP [dm6]	A	C	3.670e^-4	0.921	INTRON CG43729
2R	16692468	2R_16692468_SNP [dm3] 2R_20804963_SNP [dm6]	C	A	3.679e^-4	0.921	INTERGENIC
2R	16131974	2R_16131974_SNP [dm3] 2R_20244469_SNP [dm6]	C	A	3.691e^-4	0.921	INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1645524	2L_1645524_SNP [dm3] 2L_1645524_SNP [dm6]	T	A	3.700e^-4	0.921	INTERGENIC
2L	16799445	2L_16799445_INS [dm3] 2L_16799445_INS [dm6]	T	TTGTAATGT	3.705e^-4	0.921	UPSTREAM Ugt36Bc INTRON Ugt36Bc
2L	20941098	2L_20941098_SNP [dm3] 2L_20941098_SNP [dm6]	G	T	3.707e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15396743	3L_15396743_DEL [dm3] 3L_15403643_DEL [dm6]	AA	T	3.723e^-4	0.921	INTERGENIC
X	14666137	X_14666137_INS [dm3] X_14772104_INS [dm6]	T	TCAGTT	3.724e^-4	0.921	INTERGENIC
3R	5849238	3R_5849238_SNP [dm3] 3R_10023516_SNP [dm6]	G	A	3.730e^-4	0.921	UTR_5_PRIME CG31407 INTRON Mical & 1 other	TF binding site mE1_TFBS_inv
X	11003968	X_11003968_SNP [dm3] X_11109935_SNP [dm6]	T	G	3.734e^-4	0.921	INTRON Hsp60	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	13758619	X_13758619_SNP [dm3] X_13864586_SNP [dm6]	A	T	3.741e^-4	0.921	UTR_3_PRIME mamo INTRON mamo
2L	8683906	2L_8683906_SNP [dm3] 2L_8683906_SNP [dm6]	C	G	3.741e^-4	0.921	UPSTREAM tRNA:CR31888 DOWNSTREAM tRNA:CR31890 & 1 other INTRON CG9289
3R	14203618	3R_14203618_INS [dm3] 3R_18377896_INS [dm6]	A	AT	3.744e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
X	13026116	X_13026116_SNP [dm3] X_13132083_SNP [dm6]	T	C	3.753e^-4	0.921	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18690204	3L_18690204_INS [dm3] 3L_18697104_INS [dm6]	A	AA	3.754e^-4	0.921	UTR_3_PRIME Dic4
2L	15978341	2L_15978341_SNP [dm3] 2L_15978341_SNP [dm6]	T	A	3.758e^-4	0.921	INTERGENIC
3L	4501606	3L_4501606_SNP [dm3] 3L_4501606_SNP [dm6]	T	C	3.759e^-4	0.921	DOWNSTREAM NT1 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	10048394	2L_10048394_SNP [dm3] 2L_10048394_SNP [dm6]	C	G	3.771e^-4	0.921	INTERGENIC
2R	16069916	2R_16069916_DEL [dm3] 2R_20182411_DEL [dm6]	GG	G	3.782e^-4	0.921	INTERGENIC
3R	14961292	3R_14961292_SNP [dm3] 3R_19135570_SNP [dm6]	G	A	3.782e^-4	0.921	SYNONYMOUS_CODING Cyp12a4 DOWNSTREAM Cyp12a5
2L	12264332	2L_12264332_SNP [dm3] 2L_12264332_SNP [dm6]	A	G	3.783e^-4	0.921	INTRON aret
3R	8600644	3R_8600644_SNP [dm3] 3R_12774922_SNP [dm6]	C	T	3.787e^-4	0.921	INTRON beat-Vc
2L	12607314	2L_12607314_SNP [dm3] 2L_12607314_SNP [dm6]	C	T	3.788e^-4	0.921	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27005382	3R_27005382_SNP [dm3] 3R_31179660_SNP [dm6]	G	C	3.789e^-4	0.921	UTR_3_PRIME mesh INTRON mesh
2R	15986205	2R_15986205_SNP [dm3] 2R_20098700_SNP [dm6]	T	G	3.799e^-4	0.921	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	13063696	X_13063696_SNP [dm3] X_13169663_SNP [dm6]	A	T	3.801e^-4	0.921	INTRON CG34411
3R	14203571	3R_14203571_SNP [dm3] 3R_18377849_SNP [dm6]	T	A	3.816e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	2467158	3L_2467158_SNP [dm3] 3L_2467158_SNP [dm6]	T	C	3.817e^-4	0.921	START_GAINED CG45186 UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	13696518	2R_13696518_SNP [dm3] 2R_17809013_SNP [dm6]	C	T	3.822e^-4	0.921	SYNONYMOUS_CODING grh	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18269216	3L_18269216_SNP [dm3] 3L_18276116_SNP [dm6]	T	C	3.833e^-4	0.921	INTERGENIC
2R	17789158	2R_17789158_SNP [dm3] 2R_21901653_SNP [dm6]	C	T	3.836e^-4	0.921	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3L	13391390	3L_13391390_SNP [dm3] 3L_13398290_SNP [dm6]	C	G	3.848e^-4	0.921	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10863972	2R_10863972_SNP [dm3] 2R_14976467_SNP [dm6]	T	G	3.857e^-4	0.921	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10864069	2R_10864069_SNP [dm3] 2R_14976564_SNP [dm6]	C	G	3.869e^-4	0.921	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10067202	2L_10067202_SNP [dm3] 2L_10067202_SNP [dm6]	A	G	3.873e^-4	0.921	INTRON CG44153
X	7291284	X_7291284_INS [dm3] X_7397251_INS [dm6]	G	GG	3.874e^-4	0.921	INTRON CG1677 & 1 other
2L	15822865	2L_15822865_SNP [dm3] 2L_15822865_SNP [dm6]	A	G	3.878e^-4	0.921	EXON CR44601
2L	16802785	2L_16802785_SNP [dm3] 2L_16802785_SNP [dm6]	T	A	3.882e^-4	0.921	SYNONYMOUS_CODING CG13280	TF binding site mE1_TFBS_chinmo
3L	12153834	3L_12153834_DEL [dm3] 3L_12160734_DEL [dm6]	GGGAGTGGGCCATGGGTAT...	G	3.883e^-4	0.921	INTRON CG9760
X	12235955	X_12235955_SNP [dm3] X_12341922_SNP [dm6]	A	T	3.896e^-4	0.921	INTERGENIC
2L	10278015	2L_10278015_SNP [dm3] 2L_10278015_SNP [dm6]	C	T	3.902e^-4	0.921	UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	4504519	3L_4504519_SNP [dm3] 3L_4504519_SNP [dm6]	A	C	3.903e^-4	0.921	NON_SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
3R	13463728	3R_13463728_SNP [dm3] 3R_17638006_SNP [dm6]	C	A	3.913e^-4	0.921	UPSTREAM CR45222 INTRON CG43175
3L	13169632	3L_13169632_SNP [dm3] 3L_13176532_SNP [dm6]	G	A	3.918e^-4	0.921	SYNONYMOUS_CODING snky
3L	1560977	3L_1560977_SNP [dm3] 3L_1560977_SNP [dm6]	G	A	3.919e^-4	0.921	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3L	12507406	3L_12507406_SNP [dm3] 3L_12514306_SNP [dm6]	T	G	3.927e^-4	0.921	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
X	16624715	X_16624715_SNP [dm3] X_16730682_SNP [dm6]	G	A	3.929e^-4	0.921	UPSTREAM TwdlX INTRON CG9634
2R	9164823	2R_9164823_SNP [dm3] 2R_13277318_SNP [dm6]	C	A	3.930e^-4	0.921	INTRON Dh31-R
3L	12177353	3L_12177353_SNP [dm3] 3L_12184253_SNP [dm6]	G	T	3.940e^-4	0.921	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
X	16615962	X_16615962_DEL [dm3] X_16721929_DEL [dm6]	TTTAT	T	3.941e^-4	0.921	UPSTREAM CG34325 INTRON CG32572
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	3.946e^-4	0.921	INTRON jvl
2R	15280337	2R_15280337_SNP [dm3] 2R_19392832_SNP [dm6]	G	T	3.950e^-4	0.921	DOWNSTREAM CG11257 INTRON SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18680991	3R_18680991_DEL [dm3] 3R_22855269_DEL [dm6]	AA	A	3.955e^-4	0.921	INTERGENIC
2R	7857987	2R_7857987_SNP [dm3] 2R_11970482_SNP [dm6]	T	A	3.968e^-4	0.921	UPSTREAM CG8290 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	6307191	2L_6307191_SNP [dm3] 2L_6307191_SNP [dm6]	C	T	3.971e^-4	0.921	INTRON Ddr
3R	17318798	3R_17318798_SNP [dm3] 3R_21493076_SNP [dm6]	C	G	3.972e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
X	14515417	X_14515417_SNP [dm3] X_14621384_SNP [dm6]	G	T	3.976e^-4	0.921	INTRON NetA
3R	26303881	3R_26303881_SNP [dm3] 3R_30478159_SNP [dm6]	C	A	3.983e^-4	0.921	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4491667	X_4491667_SNP [dm3] X_4597634_SNP [dm6]	C	T	3.983e^-4	0.921	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14159885	3R_14159885_SNP [dm3] 3R_18334163_SNP [dm6]	A	G	3.991e^-4	0.921	UTR_3_PRIME CG15803
3L	4487269	3L_4487269_SNP [dm3] 3L_4487269_SNP [dm6]	T	C	3.998e^-4	0.921	SYNONYMOUS_CODING CG13722
2R	15868057	2R_15868057_SNP [dm3] 2R_19980552_SNP [dm6]	G	A	4.024e^-4	0.921	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
2R	17605250	2R_17605250_SNP [dm3] 2R_21717745_SNP [dm6]	G	C	4.031e^-4	0.921	UPSTREAM CG30398 INTRON Tango11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3351833	X_3351833_DEL [dm3] X_3457800_DEL [dm6]	TA	C	4.034e^-4	0.921	INTRON CR44999
X	14353247	X_14353247_SNP [dm3] X_14459214_SNP [dm6]	C	A	4.049e^-4	0.921	NON_SYNONYMOUS_CODING dpr8
2L	8041532	2L_8041532_SNP [dm3] 2L_8041532_SNP [dm6]	A	C	4.052e^-4	0.921	NON_SYNONYMOUS_CODING CG7429 DOWNSTREAM Cka & 2 others	TF binding site mE1_TFBS_sens
3R	8383056	3R_8383056_SNP [dm3] 3R_12557334_SNP [dm6]	G	A	4.055e^-4	0.921	INTRON Octbeta2R
3L	11280079	3L_11280079_SNP [dm3] 3L_11286979_SNP [dm6]	A	C	4.068e^-4	0.921	DOWNSTREAM CG6175 INTERGENIC
3L	5821957	3L_5821957_SNP [dm3] 3L_5828857_SNP [dm6]	C	T	4.077e^-4	0.921	INTRON vn
X	21359030	X_21359030_SNP [dm3] X_21488003_SNP [dm6]	A	G	4.077e^-4	0.921	INTERGENIC
3L	18061195	3L_18061195_SNP [dm3] 3L_18068095_SNP [dm6]	G	A	4.077e^-4	0.921	DOWNSTREAM CG44006 INTERGENIC
X	21211332	X_21211332_SNP [dm3] X_21340305_SNP [dm6]	G	A	4.086e^-4	0.921	SYNONYMOUS_CODING fliI UPSTREAM tty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
2L	15002458	2L_15002458_SNP [dm3] 2L_15002458_SNP [dm6]	A	C	4.092e^-4	0.921	INTERGENIC
2L	962938	2L_962938_SNP [dm3] 2L_962938_SNP [dm6]	C	A	4.095e^-4	0.921	INTERGENIC
2R	15324032	2R_15324032_SNP [dm3] 2R_19436527_SNP [dm6]	G	T	4.098e^-4	0.921	UPSTREAM Spt5 INTRON Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7724185	3L_7724185_SNP [dm3] 3L_7731085_SNP [dm6]	G	A	4.124e^-4	0.921	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2994928	3L_2994928_SNP [dm3] 3L_2994928_SNP [dm6]	C	A	4.130e^-4	0.921	UPSTREAM CG2113 INTERGENIC
2R	16361364	2R_16361364_SNP [dm3] 2R_20473859_SNP [dm6]	G	A	4.130e^-4	0.921	SYNONYMOUS_CODING CG12484
2L	8684478	2L_8684478_SNP [dm3] 2L_8684478_SNP [dm6]	A	T	4.134e^-4	0.921	UPSTREAM tRNA:CR31888 & 1 other DOWNSTREAM tRNA:CR31890 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4498774	3L_4498774_SNP [dm3] 3L_4498774_SNP [dm6]	T	A	4.142e^-4	0.921	UPSTREAM CG13721 DOWNSTREAM CG13720 INTERGENIC
X	13062721	X_13062721_SNP [dm3] X_13168688_SNP [dm6]	A	G	4.145e^-4	0.921	INTRON CG34411
2L	16314922	2L_16314922_SNP [dm3] 2L_16314922_SNP [dm6]	A	T	4.149e^-4	0.921	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9599822	2R_9599822_INS [dm3] 2R_13712317_INS [dm6]	A	AGTAGACCGTGG...	4.152e^-4	0.921	INTRON fas	TF binding site mE1_TFBS_HSA
2L	551639	2L_551639_SNP [dm3] 2L_551639_SNP [dm6]	G	T	4.170e^-4	0.921	SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11178066	2R_11178066_SNP [dm3] 2R_15290561_SNP [dm6]	G	A	4.179e^-4	0.921	INTRON Trpm
2R	16522886	2R_16522886_SNP [dm3] 2R_20635381_SNP [dm6]	G	A	4.182e^-4	0.921	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2L	8177594	2L_8177594_SNP [dm3] 2L_8177594_SNP [dm6]	C	T	4.184e^-4	0.921	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4156543	2L_4156543_SNP [dm3] 2L_4156543_SNP [dm6]	G	T	4.185e^-4	0.921	INTERGENIC
3L	3557459	3L_3557459_SNP [dm3] 3L_3557459_SNP [dm6]	A	C	4.186e^-4	0.921	INTRON Eip63E
2L	18152799	2L_18152799_DEL [dm3] 2L_18152799_DEL [dm6]	TGAAAATATATTTT...	C	4.194e^-4	0.921	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	10586965	2R_10586965_SNP [dm3] 2R_14699460_SNP [dm6]	A	C	4.195e^-4	0.921	INTRON mspo
2R	16131750	2R_16131750_SNP [dm3] 2R_20244245_SNP [dm6]	A	G	4.197e^-4	0.921	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	6482713	X_6482713_SNP [dm3] X_6588680_SNP [dm6]	A	C	4.201e^-4	0.921	UTR_3_PRIME CG34417 UPSTREAM CG17717
2R	4431396	2R_4431396_SNP [dm3] 2R_8543891_SNP [dm6]	G	A	4.210e^-4	0.921	UPSTREAM CR44279 INTERGENIC
3L	12332065	3L_12332065_SNP [dm3] 3L_12338965_SNP [dm6]	C	A	4.210e^-4	0.921	DOWNSTREAM CrzR INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9330399	3L_9330399_SNP [dm3] 3L_9337299_SNP [dm6]	C	A	4.215e^-4	0.921	INTRON PGRP-LA
2L	2597572	2L_2597572_SNP [dm3] 2L_2597572_SNP [dm6]	A	G	4.222e^-4	0.921	INTERGENIC
2L	5797679	2L_5797679_SNP [dm3] 2L_5797679_SNP [dm6]	A	T	4.224e^-4	0.921	INTRON CG9171
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	4.240e^-4	0.921	INTRON gish
3R	16826800	3R_16826800_SNP [dm3] 3R_21001078_SNP [dm6]	A	G	4.240e^-4	0.921	INTRON Calx
2L	11940799	2L_11940799_SNP [dm3] 2L_11940799_SNP [dm6]	T	A	4.240e^-4	0.921	INTERGENIC
2L	9779182	2L_9779182_INS [dm3] 2L_9779182_INS [dm6]	T	AAA	4.241e^-4	0.921	INTERGENIC
3L	4273322	3L_4273322_SNP [dm3] 3L_4273322_SNP [dm6]	A	G	4.249e^-4	0.921	INTRON CG1273
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	4.249e^-4	0.921	INTERGENIC
3R	27588540	3R_27588540_SNP [dm3] 3R_31762818_SNP [dm6]	C	A	4.252e^-4	0.921	DOWNSTREAM CG2150 INTERGENIC
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	4.260e^-4	0.921	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	14757402	3L_14757402_SNP [dm3] 3L_14764302_SNP [dm6]	C	T	4.262e^-4	0.921	SYNONYMOUS_CODING CG9384	TF binding site mE1_TFBS_cad
2R	19520807	2R_19520807_SNP [dm3] 2R_23633284_SNP [dm6]	A	T	4.273e^-4	0.921	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	14203556	3R_14203556_SNP [dm3] 3R_18377834_SNP [dm6]	T	C	4.274e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
X	18157805	X_18157805_INS [dm3] X_18263772_INS [dm6]	T	TGTTCAGTT	4.275e^-4	0.921	INTERGENIC
3L	3679432	3L_3679432_SNP [dm3] 3L_3679432_SNP [dm6]	C	T	4.285e^-4	0.921	INTERGENIC
X	17023489	X_17023489_SNP [dm3] X_17129456_SNP [dm6]	T	A	4.290e^-4	0.921	UPSTREAM CG5004 INTRON CG5004
3R	23235922	3R_23235922_SNP [dm3] 3R_27410200_SNP [dm6]	T	C	4.291e^-4	0.921	INTRON side
2L	18906814	2L_18906814_DEL [dm3] 2L_18906814_DEL [dm6]	TT	T	4.298e^-4	0.921	DOWNSTREAM CR44738 INTERGENIC
2R	17790136	2R_17790136_SNP [dm3] 2R_21902631_SNP [dm6]	C	G	4.300e^-4	0.921	INTRON Fili
2R	19691815	2R_19691815_SNP [dm3] 2R_23804292_SNP [dm6]	T	C	4.300e^-4	0.921	UPSTREAM CG5539 DOWNSTREAM CG13561 INTERGENIC
3R	17319563	3R_17319563_SNP [dm3] 3R_21493841_SNP [dm6]	A	G	4.305e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7090261	2L_7090261_SNP [dm3] 2L_7090261_SNP [dm6]	G	A	4.311e^-4	0.921	INTERGENIC
2L	8686060	2L_8686060_SNP [dm3] 2L_8686060_SNP [dm6]	G	A	4.324e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18893732	2R_18893732_SNP [dm3] 2R_23006209_SNP [dm6]	C	T	4.336e^-4	0.921	INTRON twi
3R	14505123	3R_14505123_SNP [dm3] 3R_18679401_SNP [dm6]	A	T	4.339e^-4	0.921	INTRON CG7706
3R	9771250	3R_9771250_SNP [dm3] 3R_13945528_SNP [dm6]	G	A	4.342e^-4	0.921	SYNONYMOUS_CODING Art6	TF binding site mE1_TFBS_chinmo
3R	14339840	3R_14339840_INS [dm3] 3R_18514118_INS [dm6]	G	GAT	4.343e^-4	0.921	UTR_5_PRIME fru INTRON fru
3L	11037099	3L_11037099_SNP [dm3] 3L_11043999_SNP [dm6]	A	T	4.343e^-4	0.921	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
X	15731394	X_15731394_SNP [dm3] X_15837361_SNP [dm6]	T	C	4.349e^-4	0.921	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
3L	18100040	3L_18100040_SNP [dm3] 3L_18106940_SNP [dm6]	A	T	4.353e^-4	0.921	UPSTREAM CG13698 DOWNSTREAM CG5147 INTRON mRpS26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	7678819	X_7678819_SNP [dm3] X_7784786_SNP [dm6]	C	T	4.354e^-4	0.921	INTERGENIC
X	18880435	X_18880435_SNP [dm3] X_18986402_SNP [dm6]	A	G	4.364e^-4	0.921	INTRON CG43759	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4504982	3L_4504982_SNP [dm3] 3L_4504982_SNP [dm6]	T	C	4.374e^-4	0.921	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
3L	13974642	3L_13974642_SNP [dm3] 3L_13981542_SNP [dm6]	G	A	4.377e^-4	0.921	UTR_3_PRIME CG17364 INTRON CG17364
3L	14538580	3L_14538580_SNP [dm3] 3L_14545480_SNP [dm6]	G	A	4.379e^-4	0.921	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14911285	2R_14911285_SNP [dm3] 2R_19023780_SNP [dm6]	T	A	4.382e^-4	0.921	INTRON 5-HT1B	TF binding site mE1_TFBS_cad
2L	10062872	2L_10062872_SNP [dm3] 2L_10062872_SNP [dm6]	T	G	4.390e^-4	0.921	NON_SYNONYMOUS_CODING Spn31A
3R	25407743	3R_25407743_SNP [dm3] 3R_29582021_SNP [dm6]	G	C	4.390e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14665643	2R_14665643_MNP [dm3] 2R_18778138_MNP [dm6]	TTG	CCT	4.415e^-4	0.921	DOWNSTREAM CR43964 INTERGENIC
X	12650309	X_12650309_SNP [dm3] X_12756276_SNP [dm6]	C	A	4.418e^-4	0.921	DOWNSTREAM ade5 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23230613	3R_23230613_SNP [dm3] 3R_27404891_SNP [dm6]	T	A	4.418e^-4	0.921	INTRON side
3R	14203564	3R_14203564_MNP [dm3] 3R_18377842_MNP [dm6]	CGC	TAT	4.420e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	14203568	3R_14203568_DEL [dm3] 3R_18377846_DEL [dm6]	GT	G	4.420e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	10544662	3L_10544662_DEL [dm3] 3L_10551562_DEL [dm6]	AG	A	4.421e^-4	0.921	INTRON A2bp1
2L	8685991	2L_8685991_SNP [dm3] 2L_8685991_SNP [dm6]	A	T	4.422e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	8686004	2L_8686004_SNP [dm3] 2L_8686004_SNP [dm6]	A	G	4.422e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17521228	3R_17521228_SNP [dm3] 3R_21695506_SNP [dm6]	T	A	4.422e^-4	0.921	INTRON CG31176
3R	16289156	3R_16289156_SNP [dm3] 3R_20463434_SNP [dm6]	T	C	4.422e^-4	0.921	INTRON Gfrl
2R	4559876	2R_4559876_SNP [dm3] 2R_8672371_SNP [dm6]	C	G	4.428e^-4	0.921	UTR_5_PRIME Acsl INTRON Acsl
3R	23417101	3R_23417101_SNP [dm3] 3R_27591379_SNP [dm6]	A	T	4.430e^-4	0.921	INTRON CG5639	TF binding site mE1_TFBS_cad
3R	5154856	3R_5154856_SNP [dm3] 3R_9329134_SNP [dm6]	T	C	4.430e^-4	0.921	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
3R	11892439	3R_11892439_SNP [dm3] 3R_16066717_SNP [dm6]	A	G	4.436e^-4	0.921	INTRON CG10185	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4431417	2R_4431417_SNP [dm3] 2R_8543912_SNP [dm6]	A	G	4.438e^-4	0.921	UPSTREAM CR44279 INTERGENIC
2R	4431430	2R_4431430_SNP [dm3] 2R_8543925_SNP [dm6]	T	A	4.438e^-4	0.921	UPSTREAM CR44279 INTERGENIC
3L	10667706	3L_10667706_SNP [dm3] 3L_10674606_SNP [dm6]	G	T	4.445e^-4	0.921	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1095461	2L_1095461_SNP [dm3] 2L_1095461_SNP [dm6]	A	T	4.454e^-4	0.921	INTRON CG4629
3L	12199303	3L_12199303_SNP [dm3] 3L_12206203_SNP [dm6]	G	A	4.455e^-4	0.921	UPSTREAM CG5626 DOWNSTREAM app INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16445454	3L_16445454_SNP [dm3] 3L_16452354_SNP [dm6]	A	G	4.472e^-4	0.921	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4967146	2R_4967146_SNP [dm3] 2R_9079641_SNP [dm6]	C	A	4.483e^-4	0.921	INTRON CG8083
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	4.486e^-4	0.921	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11654549	3L_11654549_SNP [dm3] 3L_11661449_SNP [dm6]	G	A	4.489e^-4	0.921	INTRON CG32085
3L	2301931	3L_2301931_INS [dm3] 3L_2301931_INS [dm6]	A	AAA	4.495e^-4	0.921	DOWNSTREAM MsR2 INTERGENIC
X	6543399	X_6543399_SNP [dm3] X_6649366_SNP [dm6]	G	C	4.503e^-4	0.921	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19382625	2L_19382625_SNP [dm3] 2L_19382625_SNP [dm6]	T	C	4.504e^-4	0.921	NON_SYNONYMOUS_CODING CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
3R	14203225	3R_14203225_SNP [dm3] 3R_18377503_SNP [dm6]	G	A	4.509e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	4.510e^-4	0.921	INTRON CG13579
2R	16113302	2R_16113302_SNP [dm3] 2R_20225797_SNP [dm6]	T	G	4.511e^-4	0.921	INTERGENIC
3R	14203602	3R_14203602_SNP [dm3] 3R_18377880_SNP [dm6]	C	T	4.525e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
X	11002435	X_11002435_SNP [dm3] X_11108402_SNP [dm6]	G	A	4.550e^-4	0.921	UPSTREAM Hsp60 DOWNSTREAM CG42249 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run
X	10284911	X_10284911_SNP [dm3] X_10390878_SNP [dm6]	C	T	4.555e^-4	0.921	INTRON flw
3R	11423276	3R_11423276_SNP [dm3] 3R_15597554_SNP [dm6]	G	T	4.555e^-4	0.921	INTERGENIC
3R	13727095	3R_13727095_SNP [dm3] 3R_17901373_SNP [dm6]	T	G	4.572e^-4	0.921	INTRON Rim
3R	22050120	3R_22050120_SNP [dm3] 3R_26224398_SNP [dm6]	G	A	4.573e^-4	0.921	INTERGENIC
2R	20516536	2R_20516536_SNP [dm3] 2R_24629013_SNP [dm6]	T	A	4.574e^-4	0.921	UPSTREAM snoRNA:Me18S-G393 INTRON CG13594
3L	2225472	3L_2225472_DEL [dm3] 3L_2225472_DEL [dm6]	TCCA	T	4.591e^-4	0.921	INTERGENIC
3R	18907085	3R_18907085_SNP [dm3] 3R_23081363_SNP [dm6]	G	A	4.598e^-4	0.921	SYNONYMOUS_CODING CG13830	TF binding site mE1_TFBS_cad
2L	12859178	2L_12859178_SNP [dm3] 2L_12859178_SNP [dm6]	A	T	4.602e^-4	0.921	INTERGENIC
2L	4929332	2L_4929332_SNP [dm3] 2L_4929332_SNP [dm6]	T	C	4.613e^-4	0.921	UPSTREAM hoe1 INTRON hoe1
3L	12154006	3L_12154006_SNP [dm3] 3L_12160906_SNP [dm6]	A	G	4.616e^-4	0.921	INTRON CG9760
X	14247390	X_14247390_SNP [dm3] X_14353357_SNP [dm6]	C	G	4.619e^-4	0.921	INTRON dpr8
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	4.619e^-4	0.921	INTERGENIC
3L	17499791	3L_17499791_SNP [dm3] 3L_17506691_SNP [dm6]	G	T	4.623e^-4	0.921	INTRON Oatp74D
3R	7215827	3R_7215827_SNP [dm3] 3R_11390105_SNP [dm6]	C	T	4.640e^-4	0.921	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	4.642e^-4	0.921	INTRON CG42260
X	8561115	X_8561115_SNP [dm3] X_8667082_SNP [dm6]	A	T	4.646e^-4	0.921	INTERGENIC
X	17817546	X_17817546_SNP [dm3] X_17923513_SNP [dm6]	C	G	4.648e^-4	0.921	SYNONYMOUS_CODING CG6847 DOWNSTREAM Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	10996102	3R_10996102_SNP [dm3] 3R_15170380_SNP [dm6]	A	G	4.648e^-4	0.921	DOWNSTREAM Mf INTRON Gyc88E
2L	505562	2L_505562_SNP [dm3] 2L_505562_SNP [dm6]	T	A	4.662e^-4	0.921	INTRON ush
2R	10239375	2R_10239375_SNP [dm3] 2R_14351870_SNP [dm6]	T	G	4.673e^-4	0.921	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3L	9999154	3L_9999154_SNP [dm3] 3L_10006054_SNP [dm6]	A	T	4.677e^-4	0.921	INTRON dpr6
X	10050899	X_10050899_SNP [dm3] X_10156866_SNP [dm6]	C	T	4.683e^-4	0.921	INTRON CR44894
3L	1252985	3L_1252985_SNP [dm3] 3L_1252985_SNP [dm6]	T	C	4.692e^-4	0.921	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4273019	3L_4273019_SNP [dm3] 3L_4273019_SNP [dm6]	C	G	4.692e^-4	0.921	INTRON CG1273	TF binding site mE1_TFBS_Trl
2R	8944027	2R_8944027_SNP [dm3] 2R_13056522_SNP [dm6]	T	C	4.696e^-4	0.921	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
2L	4156535	2L_4156535_SNP [dm3] 2L_4156535_SNP [dm6]	C	T	4.700e^-4	0.921	INTERGENIC
2L	3758928	2L_3758928_SNP [dm3] 2L_3758928_SNP [dm6]	A	C	4.709e^-4	0.921	INTRON CG43707
3L	2467170	3L_2467170_SNP [dm3] 3L_2467170_SNP [dm6]	G	A	4.710e^-4	0.921	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5993292	3L_5993292_SNP [dm3] 3L_6000192_SNP [dm6]	G	T	4.717e^-4	0.921	INTRON PVRAP
3R	26346867	3R_26346867_SNP [dm3] 3R_30521145_SNP [dm6]	C	T	4.732e^-4	0.921	INTRON jdp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10152020	2R_10152020_SNP [dm3] 2R_14264515_SNP [dm6]	G	A	4.740e^-4	0.921	INTRON CG8547	TF binding site mE1_TFBS_cad
2L	12923423	2L_12923423_SNP [dm3] 2L_12923423_SNP [dm6]	T	G	4.744e^-4	0.921	SYNONYMOUS_CODING ACXA UTR_3_PRIME ACXA
3R	18186932	3R_18186932_SNP [dm3] 3R_22361210_SNP [dm6]	C	G	4.745e^-4	0.921	SYNONYMOUS_CODING PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
3R	24300034	3R_24300034_SNP [dm3] 3R_28474312_SNP [dm6]	C	T	4.752e^-4	0.921	UTR_3_PRIME beat-VI
3R	16581476	3R_16581476_SNP [dm3] 3R_20755754_SNP [dm6]	T	A	4.753e^-4	0.921	UTR_3_PRIME CG42322 UPSTREAM Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5752965	3L_5752965_SNP [dm3] 3L_5759865_SNP [dm6]	C	T	4.765e^-4	0.921	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	7978486	X_7978486_SNP [dm3] X_8084453_SNP [dm6]	G	A	4.767e^-4	0.921	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
3R	23678546	3R_23678546_SNP [dm3] 3R_27852824_SNP [dm6]	T	C	4.770e^-4	0.921	INTRON CG34353
2L	3765208	2L_3765208_SNP [dm3] 2L_3765208_SNP [dm6]	C	A	4.771e^-4	0.921	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad
2L	4638699	2L_4638699_SNP [dm3] 2L_4638699_SNP [dm6]	A	G	4.778e^-4	0.921	INTERGENIC
2R	11436686	2R_11436686_SNP [dm3] 2R_15549181_SNP [dm6]	A	C	4.779e^-4	0.921	INTRON CG8192	TF binding site BDTNP1_TFBS_z
2R	18862157	2R_18862157_SNP [dm3] 2R_22974634_SNP [dm6]	C	A	4.786e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	14203325	3R_14203325_SNP [dm3] 3R_18377603_SNP [dm6]	T	C	4.800e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC
3R	21909340	3R_21909340_SNP [dm3] 3R_26083618_SNP [dm6]	A	T	4.806e^-4	0.921	INTRON dys
2L	9821660	2L_9821660_SNP [dm3] 2L_9821660_SNP [dm6]	A	T	4.830e^-4	0.921	INTRON nAChRalpha6
3L	1586560	3L_1586560_SNP [dm3] 3L_1586560_SNP [dm6]	T	A	4.830e^-4	0.921	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	19390102	2R_19390102_SNP [dm3] 2R_23502579_SNP [dm6]	G	T	4.834e^-4	0.921	UPSTREAM CG13559 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17825277	X_17825277_SNP [dm3] X_17931244_SNP [dm6]	G	A	4.836e^-4	0.921	INTRON Sh
2R	10239397	2R_10239397_SNP [dm3] 2R_14351892_SNP [dm6]	T	G	4.837e^-4	0.921	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
2L	16065801	2L_16065801_SNP [dm3] 2L_16065801_SNP [dm6]	T	A	4.844e^-4	0.921	INTRON beat-Ia
3L	11352507	3L_11352507_SNP [dm3] 3L_11359407_SNP [dm6]	C	A	4.845e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18875496	3L_18875496_SNP [dm3] 3L_18882396_SNP [dm6]	T	C	4.851e^-4	0.921	UTR_5_PRIME CG3961 INTRON CG3961
3R	15649145	3R_15649145_SNP [dm3] 3R_19823423_SNP [dm6]	C	T	4.865e^-4	0.921	INTRON bnl
2R	9311193	2R_9311193_SNP [dm3] 2R_13423688_SNP [dm6]	G	C	4.867e^-4	0.921	UPSTREAM CG30060 INTRON CG42321
3R	11600118	3R_11600118_SNP [dm3] 3R_15774396_SNP [dm6]	G	T	4.868e^-4	0.921	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
X	16742787	X_16742787_SNP [dm3] X_16848754_SNP [dm6]	T	A	4.870e^-4	0.921	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_chinmo
X	5891600	X_5891600_SNP [dm3] X_5997567_SNP [dm6]	T	C	4.871e^-4	0.921	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12109372	3R_12109372_SNP [dm3] 3R_16283650_SNP [dm6]	A	T	4.872e^-4	0.921	INTRON gish
X	4375839	X_4375839_SNP [dm3] X_4481806_SNP [dm6]	T	C	4.881e^-4	0.921	INTRON CR32773 & 1 other
X	5405601	X_5405601_SNP [dm3] X_5511568_SNP [dm6]	T	C	4.886e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
X	21470074	X_21470074_SNP [dm3] X_21599047_SNP [dm6]	A	G	4.888e^-4	0.921	INTERGENIC
2L	13698211	2L_13698211_SNP [dm3] 2L_13698211_SNP [dm6]	C	T	4.894e^-4	0.921	INTRON CG31814
3L	21268114	3L_21268114_SNP [dm3] 3L_21275014_SNP [dm6]	A	T	4.895e^-4	0.921	INTRON AcCoAS
3R	23501931	3R_23501931_SNP [dm3] 3R_27676209_SNP [dm6]	G	A	4.897e^-4	0.921	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18731268	3R_18731268_SNP [dm3] 3R_22905546_SNP [dm6]	A	T	4.910e^-4	0.921	INTRON klg
3L	4505412	3L_4505412_SNP [dm3] 3L_4505412_SNP [dm6]	T	C	4.910e^-4	0.921	SYNONYMOUS_CODING NT1
2L	12859179	2L_12859179_SNP [dm3] 2L_12859179_SNP [dm6]	A	G	4.911e^-4	0.921	INTERGENIC
2R	8173696	2R_8173696_SNP [dm3] 2R_12286191_SNP [dm6]	T	C	4.913e^-4	0.921	NON_SYNONYMOUS_CODING CG42700 INTRON CG42700
2L	9370455	2L_9370455_SNP [dm3] 2L_9370455_SNP [dm6]	T	G	4.920e^-4	0.921	UTR_3_PRIME Shawl
2L	8499638	2L_8499638_SNP [dm3] 2L_8499638_SNP [dm6]	G	A	4.922e^-4	0.921	INTRON Dh31
2R	15490600	2R_15490600_SNP [dm3] 2R_19603095_SNP [dm6]	A	T	4.925e^-4	0.921	UPSTREAM CR44473 INTRON sm
X	6448497	X_6448497_SNP [dm3] X_6554464_SNP [dm6]	C	A	4.928e^-4	0.921	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3L	3387616	3L_3387616_SNP [dm3] 3L_3387616_SNP [dm6]	A	T	4.930e^-4	0.921	INTERGENIC
2L	10477608	2L_10477608_DEL [dm3] 2L_10477608_DEL [dm6]	ATAAGA	A	4.933e^-4	0.921	INTRON RluA-2	TF binding site mE1_TFBS_ttk
3L	2695040	3L_2695040_SNP [dm3] 3L_2695040_SNP [dm6]	G	C	4.937e^-4	0.921	INTRON Fife
2L	8686155	2L_8686155_SNP [dm3] 2L_8686155_SNP [dm6]	C	T	4.937e^-4	0.921	UPSTREAM Trs23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13981794	3L_13981794_SNP [dm3] 3L_13988694_SNP [dm6]	A	C	4.942e^-4	0.921	DOWNSTREAM CG9040 INTRON CG17364
X	13973016	X_13973016_SNP [dm3] X_14078983_SNP [dm6]	T	G	4.948e^-4	0.921	INTERGENIC
2R	8169113	2R_8169113_DEL [dm3] 2R_12281608_DEL [dm6]	TACAATCAT	T	4.962e^-4	0.921	INTRON CG42700
2L	16860961	2L_16860961_INS [dm3] 2L_16860961_INS [dm6]	T	TTGT	4.970e^-4	0.921	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
3L	17321323	3L_17321323_SNP [dm3] 3L_17328223_SNP [dm6]	T	C	4.971e^-4	0.921	INTRON Or74a
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	4.972e^-4	0.921	INTRON GABA-B-R1
3R	23335920	3R_23335920_SNP [dm3] 3R_27510198_SNP [dm6]	A	G	4.973e^-4	0.921	INTERGENIC
2L	9460410	2L_9460410_SNP [dm3] 2L_9460410_SNP [dm6]	T	C	4.978e^-4	0.921	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11142535	3L_11142535_SNP [dm3] 3L_11149435_SNP [dm6]	T	G	4.984e^-4	0.921	DOWNSTREAM CG6216 INTRON CG32082
3L	5821980	3L_5821980_SNP [dm3] 3L_5828880_SNP [dm6]	C	T	4.988e^-4	0.921	INTRON vn
X	18157782	X_18157782_SNP [dm3] X_18263749_SNP [dm6]	G	A	4.989e^-4	0.921	INTERGENIC
2R	10893460	2R_10893460_SNP [dm3] 2R_15005955_SNP [dm6]	C	T	4.993e^-4	0.921	INTERGENIC
3R	10648938	3R_10648938_SNP [dm3] 3R_14823216_SNP [dm6]	A	G	4.995e^-4	0.921	INTRON btsz	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16953063	2L_16953063_SNP [dm3] 2L_16953063_SNP [dm6]	A	C	4.996e^-4	0.921	INTERGENIC
X	6712611	X_6712611_SNP [dm3] X_6818578_SNP [dm6]	G	A	5.005e^-4	0.921	UTR_3_PRIME Nf-YC DOWNSTREAM iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	5.009e^-4	0.921	INTERGENIC
2L	16635040	2L_16635040_SNP [dm3] 2L_16635040_SNP [dm6]	T	G	5.012e^-4	0.921	INTRON CG42389
3R	27592981	3R_27592981_SNP [dm3] 3R_31767259_SNP [dm6]	T	A	5.016e^-4	0.921	UPSTREAM pncr017:3R EXON CR43436
2R	15085222	2R_15085222_SNP [dm3] 2R_19197717_SNP [dm6]	G	T	5.021e^-4	0.921	INTRON hppy
3L	12107806	3L_12107806_SNP [dm3] 3L_12114706_SNP [dm6]	G	A	5.022e^-4	0.921	INTERGENIC
2L	16579070	2L_16579070_SNP [dm3] 2L_16579070_SNP [dm6]	G	T	5.022e^-4	0.921	INTRON CG42389	TF binding site mE1_TFBS_inv
X	16615945	X_16615945_SNP [dm3] X_16721912_SNP [dm6]	A	T	5.028e^-4	0.921	UPSTREAM CG34325 INTRON CG32572
2R	10864066	2R_10864066_SNP [dm3] 2R_14976561_SNP [dm6]	T	A	5.030e^-4	0.921	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14203575	3R_14203575_SNP [dm3] 3R_18377853_SNP [dm6]	T	C	5.031e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	13399425	3L_13399425_SNP [dm3] 3L_13406325_SNP [dm6]	C	A	5.035e^-4	0.921	INTERGENIC
2L	8171510	2L_8171510_SNP [dm3] 2L_8171510_SNP [dm6]	C	T	5.040e^-4	0.921	INTRON Piezo
3R	15513497	3R_15513497_SNP [dm3] 3R_19687775_SNP [dm6]	C	T	5.073e^-4	0.921	INTRON Naam
2R	7780114	2R_7780114_SNP [dm3] 2R_11892609_SNP [dm6]	C	A	5.079e^-4	0.921	UPSTREAM snoRNA:Me28S-A1322 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14863091	X_14863091_SNP [dm3] X_14969058_SNP [dm6]	C	T	5.085e^-4	0.921	INTRON eag
2L	7146119	2L_7146119_SNP [dm3] 2L_7146119_SNP [dm6]	T	A	5.089e^-4	0.921	DOWNSTREAM CR44612 INTRON Pvf3
X	4494923	X_4494923_SNP [dm3] X_4600890_SNP [dm6]	C	T	5.091e^-4	0.921	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
3L	12175352	3L_12175352_SNP [dm3] 3L_12182252_SNP [dm6]	T	C	5.095e^-4	0.921	SYNONYMOUS_CODING CAH2
3L	4273010	3L_4273010_SNP [dm3] 3L_4273010_SNP [dm6]	C	G	5.095e^-4	0.921	INTRON CG1273	TF binding site mE1_TFBS_Trl
3L	4352380	3L_4352380_INS [dm3] 3L_4352380_INS [dm6]	T	TTGATGGGT	5.097e^-4	0.921	INTRON Cip4
2R	14631181	2R_14631181_SNP [dm3] 2R_18743676_SNP [dm6]	C	A	5.103e^-4	0.921	UPSTREAM CG18609 DOWNSTREAM CG17821 INTRON Hs3st-A
3L	4487347	3L_4487347_SNP [dm3] 3L_4487347_SNP [dm6]	G	A	5.107e^-4	0.921	SYNONYMOUS_CODING CG13722
3L	17673922	3L_17673922_SNP [dm3] 3L_17680822_SNP [dm6]	C	G	5.114e^-4	0.921	INTRON CG34251
2L	5797545	2L_5797545_SNP [dm3] 2L_5797545_SNP [dm6]	T	G	5.119e^-4	0.921	INTRON CG9171
3R	18590013	3R_18590013_SNP [dm3] 3R_22764291_SNP [dm6]	A	C	5.122e^-4	0.921	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	5251765	2L_5251765_SNP [dm3] 2L_5251765_SNP [dm6]	C	G	5.126e^-4	0.921	INTRON tkv
2L	18152836	2L_18152836_SNP [dm3] 2L_18152836_SNP [dm6]	A	T	5.127e^-4	0.921	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	17739331	2R_17739331_SNP [dm3] 2R_21851826_SNP [dm6]	T	C	5.131e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
X	2223170	X_2223170_SNP [dm3] X_2329137_SNP [dm6]	G	T	5.131e^-4	0.921	DOWNSTREAM CG2854 INTRON phl
X	19346695	X_19346695_INS [dm3] X_19452662_INS [dm6]	T	TT	5.137e^-4	0.921	INTRON kek5	TF binding site mE1_TFBS_chinmo
2L	1641557	2L_1641557_SNP [dm3] 2L_1641557_SNP [dm6]	A	G	5.138e^-4	0.921	INTERGENIC
X	16615937	X_16615937_DEL [dm3] X_16721904_DEL [dm6]	TAACG	T	5.153e^-4	0.921	UPSTREAM CG34325 INTRON CG32572
X	11180606	X_11180606_SNP [dm3] X_11286573_SNP [dm6]	G	A	5.162e^-4	0.921	INTRON CG44422
3R	14203696	3R_14203696_SNP [dm3] 3R_18377974_SNP [dm6]	T	A	5.168e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	5.170e^-4	0.921	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	9885033	2R_9885033_SNP [dm3] 2R_13997528_SNP [dm6]	C	A	5.174e^-4	0.921	INTRON mam	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5725611	2L_5725611_SNP [dm3] 2L_5725611_SNP [dm6]	G	A	5.174e^-4	0.921	DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_HSA
2R	10239417	2R_10239417_SNP [dm3] 2R_14351912_SNP [dm6]	T	C	5.176e^-4	0.921	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
X	8764047	X_8764047_SNP [dm3] X_8870014_SNP [dm6]	T	G	5.184e^-4	0.921	SYNONYMOUS_CODING CG12075	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	20504699	2R_20504699_DEL [dm3] 2R_24617176_DEL [dm6]	TCGTCCTTT	T	5.184e^-4	0.921	INTRON CG13594
X	4412903	X_4412903_SNP [dm3] X_4518870_SNP [dm6]	G	A	5.197e^-4	0.921	INTRON CR32773	TF binding site mE1_TFBS_inv
2L	13961300	2L_13961300_SNP [dm3] 2L_13961300_SNP [dm6]	T	C	5.202e^-4	0.921	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18988147	3R_18988147_SNP [dm3] 3R_23162425_SNP [dm6]	A	C	5.202e^-4	0.921	INTERGENIC
3L	18127102	3L_18127102_SNP [dm3] 3L_18134002_SNP [dm6]	C	T	5.218e^-4	0.921	INTERGENIC
X	20900429	X_20900429_SNP [dm3] X_21029402_SNP [dm6]	G	T	5.231e^-4	0.921	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2L	4156566	2L_4156566_SNP [dm3] 2L_4156566_SNP [dm6]	T	A	5.234e^-4	0.921	INTERGENIC
2L	16213468	2L_16213468_SNP [dm3] 2L_16213468_SNP [dm6]	T	C	5.240e^-4	0.921	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5242339	2L_5242339_SNP [dm3] 2L_5242339_SNP [dm6]	T	C	5.255e^-4	0.921	UTR_5_PRIME tkv UPSTREAM CR14033 INTRON tkv	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	13772623	2R_13772623_INS [dm3] 2R_17885118_INS [dm6]	A	AA	5.257e^-4	0.921	INTRON Elk
2L	5899726	2L_5899726_SNP [dm3] 2L_5899726_SNP [dm6]	G	T	5.258e^-4	0.921	DOWNSTREAM CR44579 INTERGENIC
3L	3783422	3L_3783422_SNP [dm3] 3L_3783422_SNP [dm6]	A	T	5.262e^-4	0.921	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20828449	2L_20828449_SNP [dm3] 2L_20828449_SNP [dm6]	C	G	5.265e^-4	0.921	DOWNSTREAM CG9331 INTERGENIC
3R	15659156	3R_15659156_SNP [dm3] 3R_19833434_SNP [dm6]	C	T	5.266e^-4	0.921	INTRON bnl
3L	2477369	3L_2477369_SNP [dm3] 3L_2477369_SNP [dm6]	G	A	5.270e^-4	0.921	SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2823391	2L_2823391_SNP [dm3] 2L_2823391_SNP [dm6]	T	C	5.273e^-4	0.921	DOWNSTREAM CG3123 INTRON Duox
3R	5913663	3R_5913663_SNP [dm3] 3R_10087941_SNP [dm6]	A	T	5.274e^-4	0.921	INTRON CR45054	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17338537	2L_17338537_INS [dm3] 2L_17338537_INS [dm6]	T	TA	5.285e^-4	0.921	INTERGENIC
3R	26031253	3R_26031253_SNP [dm3] 3R_30205531_SNP [dm6]	A	C	5.295e^-4	0.921	DOWNSTREAM RpS7 INTERGENIC
2R	12131070	2R_12131070_SNP [dm3] 2R_16243565_SNP [dm6]	T	A	5.298e^-4	0.921	UTR_3_PRIME CngA	TF binding site mE1_TFBS_inv
2R	10239618	2R_10239618_SNP [dm3] 2R_14352113_SNP [dm6]	G	T	5.299e^-4	0.921	UPSTREAM CG8613 DOWNSTREAM Shroom INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2R	20510882	2R_20510882_SNP [dm3] 2R_24623359_SNP [dm6]	C	T	5.301e^-4	0.921	INTRON CG13594
2R	15280808	2R_15280808_SNP [dm3] 2R_19393303_SNP [dm6]	A	G	5.301e^-4	0.921	SYNONYMOUS_CODING SdhA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3304378	X_3304378_SNP [dm3] X_3410345_SNP [dm6]	G	A	5.304e^-4	0.921	INTRON CR44999 & 1 other
2L	21722416	2L_21722416_SNP [dm3] 2L_21722416_SNP [dm6]	G	A	5.305e^-4	0.921	INTRON CG31619
3L	4487887	3L_4487887_SNP [dm3] 3L_4487887_SNP [dm6]	A	G	5.332e^-4	0.921	INTRON CG13722
3L	4488074	3L_4488074_SNP [dm3] 3L_4488074_SNP [dm6]	G	A	5.335e^-4	0.921	INTRON CG13722
3L	12177320	3L_12177320_SNP [dm3] 3L_12184220_SNP [dm6]	C	A	5.336e^-4	0.921	UPSTREAM CG6910 DOWNSTREAM CAH2 INTERGENIC
3L	11652954	3L_11652954_DEL [dm3] 3L_11659854_DEL [dm6]	GTCTTGAAGG	G	5.342e^-4	0.921	INTRON CG32085
3R	14203086	3R_14203086_SNP [dm3] 3R_18377364_SNP [dm6]	T	G	5.354e^-4	0.921	DOWNSTREAM CR44946 & 1 other INTERGENIC
X	16727279	X_16727279_SNP [dm3] X_16833246_SNP [dm6]	C	A	5.356e^-4	0.921	INTRON CG13004
3R	14203573	3R_14203573_SNP [dm3] 3R_18377851_SNP [dm6]	T	A	5.359e^-4	0.921	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	16758290	3R_16758290_SNP [dm3] 3R_20932568_SNP [dm6]	T	C	5.367e^-4	0.921	INTRON CG31191
2R	14945694	2R_14945694_SNP [dm3] 2R_19058189_SNP [dm6]	G	A	5.370e^-4	0.921	INTERGENIC
2R	11797455	2R_11797455_SNP [dm3] 2R_15909950_SNP [dm6]	G	T	5.371e^-4	0.921	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13828062	3R_13828062_SNP [dm3] 3R_18002340_SNP [dm6]	A	T	5.386e^-4	0.921	INTRON cpo
3R	18702023	3R_18702023_SNP [dm3] 3R_22876301_SNP [dm6]	A	G	5.386e^-4	0.921	INTERGENIC
3R	18702024	3R_18702024_SNP [dm3] 3R_22876302_SNP [dm6]	T	C	5.386e^-4	0.921	INTERGENIC
2L	8178046	2L_8178046_SNP [dm3] 2L_8178046_SNP [dm6]	A	C	5.391e^-4	0.921	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_Tarsus_Leg_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results