DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.461e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.05856

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.3918	0.0675

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1759 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	4.493e^-7	0.371	INTERGENIC
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	5.870e^-7	0.371	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	6.971e^-7	0.371	NON_SYNONYMOUS_CODING sti
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	7.923e^-7	0.371	INTRON CngA	TF binding site mE1_TFBS_inv
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	5.714e^-6	0.981	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3L	14259814	3L_14259814_SNP [dm3] 3L_14266714_SNP [dm6]	A	G	5.887e^-6	0.981	INTERGENIC
3L	14259795	3L_14259795_SNP [dm3] 3L_14266695_SNP [dm6]	A	T	6.349e^-6	0.981	INTERGENIC
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	6.934e^-6	0.981	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3L	14259792	3L_14259792_SNP [dm3] 3L_14266692_SNP [dm6]	C	A	7.341e^-6	0.981	INTERGENIC
3L	4318048	3L_4318048_SNP [dm3] 3L_4318048_SNP [dm6]	C	T	7.670e^-6	0.981	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14259817	3L_14259817_SNP [dm3] 3L_14266717_SNP [dm6]	A	T	8.681e^-6	0.981	INTERGENIC
3R	25409024	3R_25409024_SNP [dm3] 3R_29583302_SNP [dm6]	C	A	9.100e^-6	0.981	INTERGENIC
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	1.052e^-5	0.981	INTRON Tgi
X	16435414	X_16435414_SNP [dm3] X_16541381_SNP [dm6]	A	G	1.068e^-5	0.981	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	1.146e^-5	0.981	INTRON CngA	TF binding site mE1_TFBS_inv
3L	8383762	3L_8383762_SNP [dm3] 3L_8390662_SNP [dm6]	A	G	1.199e^-5	0.981	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	1.305e^-5	0.981	INTRON bnl
3L	9245436	3L_9245436_SNP [dm3] 3L_9252336_SNP [dm6]	T	A	1.368e^-5	0.981	UTR_5_PRIME GluRIB DOWNSTREAM CG4477
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	1.719e^-5	0.981	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	1.864e^-5	0.981	INTRON SNF4Agamma
2L	8263633	2L_8263633_SNP [dm3] 2L_8263633_SNP [dm6]	C	T	1.927e^-5	0.981	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	1913678	3L_1913678_SNP [dm3] 3L_1913678_SNP [dm6]	A	G	2.044e^-5	0.981	INTERGENIC
2R	17727241	2R_17727241_SNP [dm3] 2R_21839736_SNP [dm6]	T	C	2.102e^-5	0.981	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	2.185e^-5	0.981	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	2.193e^-5	0.981	INTRON TyrR
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	2.233e^-5	0.981	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	2.246e^-5	0.981	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	2.273e^-5	0.981	UTR_3_PRIME Elf
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	2.282e^-5	0.981	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	2.528e^-5	0.981	INTRON dpr6
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	2.538e^-5	0.981	INTRON Tango5
2L	9769453	2L_9769453_SNP [dm3] 2L_9769453_SNP [dm6]	C	G	2.690e^-5	0.981	NON_SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2322939	3L_2322939_SNP [dm3] 3L_2322939_SNP [dm6]	C	T	2.747e^-5	0.981	INTRON MsR1
3L	18898322	3L_18898322_SNP [dm3] 3L_18905222_SNP [dm6]	A	G	2.750e^-5	0.981	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19968629	3R_19968629_SNP [dm3] 3R_24142907_SNP [dm6]	A	G	2.863e^-5	0.981	INTRON Kal1
X	3822303	X_3822303_SNP [dm3] X_3928270_SNP [dm6]	A	T	2.966e^-5	0.981	INTRON CG42541
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	3.177e^-5	0.981	INTRON GABA-B-R1
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	3.331e^-5	0.981	INTRON CG11537
2R	16584443	2R_16584443_SNP [dm3] 2R_20696938_SNP [dm6]	G	A	3.407e^-5	0.981	INTERGENIC
3R	19452240	3R_19452240_SNP [dm3] 3R_23626518_SNP [dm6]	C	A	3.448e^-5	0.981	INTRON CG31145	TF binding site mE1_TFBS_chinmo
3L	18192022	3L_18192022_SNP [dm3] 3L_18198922_SNP [dm6]	G	T	3.453e^-5	0.981	INTERGENIC
2R	14282208	2R_14282208_SNP [dm3] 2R_18394703_SNP [dm6]	T	A	3.480e^-5	0.981	NON_SYNONYMOUS_CODING Idgf5
2R	14282222	2R_14282222_SNP [dm3] 2R_18394717_SNP [dm6]	C	T	3.480e^-5	0.981	SYNONYMOUS_CODING Idgf5
X	15128504	X_15128504_SNP [dm3] X_15234471_SNP [dm6]	G	T	3.520e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12932154	X_12932154_SNP [dm3] X_13038121_SNP [dm6]	G	A	3.670e^-5	0.981	INTRON rad
2R	18563878	2R_18563878_SNP [dm3] 2R_22676373_SNP [dm6]	A	G	3.670e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3695799	2L_3695799_SNP [dm3] 2L_3695799_SNP [dm6]	G	A	3.716e^-5	0.981	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2R	17085461	2R_17085461_SNP [dm3] 2R_21197956_SNP [dm6]	C	A	3.851e^-5	0.981	INTRON Lapsyn
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	3.867e^-5	0.981	INTRON CG4374
2R	16939931	2R_16939931_SNP [dm3] 2R_21052426_SNP [dm6]	T	A	4.195e^-5	0.981	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	4.315e^-5	0.981	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18030236	X_18030236_SNP [dm3] X_18136203_SNP [dm6]	A	G	4.388e^-5	0.981	INTRON ari-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	4.542e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	4.663e^-5	0.981	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14781163	3R_14781163_SNP [dm3] 3R_18955441_SNP [dm6]	G	A	4.691e^-5	0.981	INTRON CG42613 & 1 other
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	4.704e^-5	0.981	INTERGENIC
3R	6497610	3R_6497610_SNP [dm3] 3R_10671888_SNP [dm6]	G	A	4.756e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3822406	X_3822406_SNP [dm3] X_3928373_SNP [dm6]	G	A	4.848e^-5	0.981	INTRON CG42541
3L	9544935	3L_9544935_SNP [dm3] 3L_9551835_SNP [dm6]	T	A	5.068e^-5	0.981	INTRON CG42673
3R	8383056	3R_8383056_SNP [dm3] 3R_12557334_SNP [dm6]	G	A	5.188e^-5	0.981	INTRON Octbeta2R
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	5.204e^-5	0.981	INTERGENIC
2L	6778840	2L_6778840_SNP [dm3] 2L_6778840_SNP [dm6]	A	T	5.227e^-5	0.981	UTR_3_PRIME nrv1 DOWNSTREAM CG17378
X	12169425	X_12169425_SNP [dm3] X_12275392_SNP [dm6]	C	T	5.279e^-5	0.981	DOWNSTREAM CG45603 INTRON Ten-a
X	15128331	X_15128331_SNP [dm3] X_15234298_SNP [dm6]	T	C	5.310e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11104711	3L_11104711_SNP [dm3] 3L_11111611_SNP [dm6]	G	A	5.376e^-5	0.981	NON_SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	5.398e^-5	0.981	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	5.584e^-5	0.981	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5270484	2R_5270484_DEL [dm3] 2R_9382979_DEL [dm6]	ACTAATACA	A	5.593e^-5	0.981	INTRON CG13954
3L	1666520	3L_1666520_SNP [dm3] 3L_1666520_SNP [dm6]	A	G	5.757e^-5	0.981	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634b & 3 others INTRON Uhg7 EXON snoRNA:Me28S-A2634c	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11299654	3L_11299654_SNP [dm3] 3L_11306554_SNP [dm6]	T	C	5.771e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5270614	2R_5270614_SNP [dm3] 2R_9383109_SNP [dm6]	A	G	5.845e^-5	0.981	INTRON CG13954
3R	18483257	3R_18483257_SNP [dm3] 3R_22657535_SNP [dm6]	G	A	5.904e^-5	0.981	INTRON CG45058
X	10734320	X_10734320_SNP [dm3] X_10840287_SNP [dm6]	G	A	6.019e^-5	0.981	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
2R	10864025	2R_10864025_SNP [dm3] 2R_14976520_SNP [dm6]	G	C	6.031e^-5	0.981	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13542947	3L_13542947_SNP [dm3] 3L_13549847_SNP [dm6]	G	A	6.031e^-5	0.981	INTRON bru-3
X	10617336	X_10617336_INS [dm3] X_10723303_INS [dm6]	G	GAGCGGGGCGGGCGGTAAGA...	6.051e^-5	0.981	INTRON CG32676
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	6.113e^-5	0.981	INTRON bnl
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	6.177e^-5	0.981	INTRON bnl
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	6.350e^-5	0.981	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	6.579e^-5	0.981	INTERGENIC
3L	18654970	3L_18654970_SNP [dm3] 3L_18661870_SNP [dm6]	A	G	6.590e^-5	0.981	UTR_5_PRIME MYPT-75D
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	6.722e^-5	0.981	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18468957	3R_18468957_SNP [dm3] 3R_22643235_SNP [dm6]	T	C	6.859e^-5	0.981	INTRON CG45058
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	7.026e^-5	0.981	UTR_5_PRIME CG6841 UPSTREAM CSN1b
2R	7296150	2R_7296150_SNP [dm3] 2R_11408645_SNP [dm6]	C	A	7.063e^-5	0.981	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
X	3918834	X_3918834_DEL [dm3] X_4024801_DEL [dm6]	AA	A	7.101e^-5	0.981	INTERGENIC
3L	15261121	3L_15261121_SNP [dm3] 3L_15268021_SNP [dm6]	A	T	7.149e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	19283763	3R_19283763_SNP [dm3] 3R_23458041_SNP [dm6]	A	G	7.203e^-5	0.981	INTRON CG4374
2R	16939934	2R_16939934_SNP [dm3] 2R_21052429_SNP [dm6]	C	G	7.217e^-5	0.981	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1760104	2L_1760104_SNP [dm3] 2L_1760104_SNP [dm6]	C	A	7.263e^-5	0.981	INTERGENIC
2R	19438074	2R_19438074_SNP [dm3] 2R_23550551_SNP [dm6]	G	A	7.369e^-5	0.981	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	2362670	3L_2362670_SNP [dm3] 3L_2362670_SNP [dm6]	T	A	7.539e^-5	0.981	UTR_3_PRIME CG13801
3L	2357622	3L_2357622_INS [dm3] 3L_2357622_INS [dm6]	A	ATATTTACA	7.571e^-5	0.981	INTERGENIC
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	7.576e^-5	0.981	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19733539	2L_19733539_SNP [dm3] 2L_19733539_SNP [dm6]	A	G	7.738e^-5	0.981	NON_SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
X	1783119	X_1783119_SNP [dm3] X_1889086_SNP [dm6]	T	G	7.834e^-5	0.981	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	7.907e^-5	0.981	INTRON bnl
3L	7382966	3L_7382966_SNP [dm3] 3L_7389866_SNP [dm6]	G	C	7.912e^-5	0.981	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7382971	3L_7382971_SNP [dm3] 3L_7389871_SNP [dm6]	A	T	7.912e^-5	0.981	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7908766	3L_7908766_SNP [dm3] 3L_7915666_SNP [dm6]	A	G	8.156e^-5	0.981	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1263330	3L_1263330_SNP [dm3] 3L_1263330_SNP [dm6]	T	G	8.165e^-5	0.981	INTRON CG9134
3L	18897858	3L_18897858_SNP [dm3] 3L_18904758_SNP [dm6]	T	C	8.225e^-5	0.981	UPSTREAM CG6841 INTRON CSN1b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5936960	2L_5936960_SNP [dm3] 2L_5936960_SNP [dm6]	C	T	8.265e^-5	0.981	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11104653	3L_11104653_SNP [dm3] 3L_11111553_SNP [dm6]	G	A	8.472e^-5	0.981	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
2R	20718933	2R_20718933_SNP [dm3] 2R_24831410_SNP [dm6]	G	A	8.506e^-5	0.981	INTRON Dll	TF binding site mE1_TFBS_chinmo
X	17042385	X_17042385_SNP [dm3] X_17148352_SNP [dm6]	G	A	8.533e^-5	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	499585	3L_499585_SNP [dm3] 3L_499585_SNP [dm6]	C	T	8.541e^-5	0.981	DOWNSTREAM CG34267 INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23833947	3L_23833947_SNP [dm3] 3L_23840847_SNP [dm6]	A	T	8.551e^-5	0.981	INTRON CG40470
3L	18897526	3L_18897526_SNP [dm3] 3L_18904426_SNP [dm6]	C	T	8.561e^-5	0.981	SYNONYMOUS_CODING CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	16713209	3R_16713209_SNP [dm3] 3R_20887487_SNP [dm6]	T	C	8.652e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	8.718e^-5	0.981	INTRON CG14082
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	8.726e^-5	0.981	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13400561	3L_13400561_SNP [dm3] 3L_13407461_SNP [dm6]	A	T	8.745e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22715161	3R_22715161_SNP [dm3] 3R_26889439_SNP [dm6]	C	G	8.774e^-5	0.981	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	12616615	2R_12616615_SNP [dm3] 2R_16729110_SNP [dm6]	G	T	8.885e^-5	0.981	INTRON CG30463
X	16716716	X_16716716_SNP [dm3] X_16822683_SNP [dm6]	C	T	8.890e^-5	0.981	SYNONYMOUS_CODING CG4829 START_GAINED CG4829 UTR_5_PRIME CG4829
2L	3794243	2L_3794243_SNP [dm3] 2L_3794243_SNP [dm6]	T	C	9.087e^-5	0.981	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
2R	10872237	2R_10872237_SNP [dm3] 2R_14984732_SNP [dm6]	T	C	9.183e^-5	0.981	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	9.195e^-5	0.981	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
2L	8263647	2L_8263647_SNP [dm3] 2L_8263647_SNP [dm6]	G	A	9.263e^-5	0.981	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	12986198	3L_12986198_SNP [dm3] 3L_12993098_SNP [dm6]	T	A	9.275e^-5	0.981	INTERGENIC
3R	19475912	3R_19475912_SNP [dm3] 3R_23650190_SNP [dm6]	A	G	9.339e^-5	0.981	INTRON CG31145
X	5879487	X_5879487_SNP [dm3] X_5985454_SNP [dm6]	A	C	9.343e^-5	0.981	INTRON Grip
3L	1913735	3L_1913735_SNP [dm3] 3L_1913735_SNP [dm6]	A	G	9.362e^-5	0.981	INTERGENIC
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	9.446e^-5	0.981	UPSTREAM PH4alphaNE3 INTRON CG31021
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	9.453e^-5	0.981	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15650820	3R_15650820_SNP [dm3] 3R_19825098_SNP [dm6]	T	G	9.482e^-5	0.981	INTRON bnl
3L	11104632	3L_11104632_SNP [dm3] 3L_11111532_SNP [dm6]	C	T	9.534e^-5	0.981	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3L	13142709	3L_13142709_SNP [dm3] 3L_13149609_SNP [dm6]	G	T	9.556e^-5	0.981	INTERGENIC
2L	2074874	2L_2074874_SNP [dm3] 2L_2074874_SNP [dm6]	A	T	9.668e^-5	0.981	INTRON dpr3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16180083	3R_16180083_SNP [dm3] 3R_20354361_SNP [dm6]	T	C	9.909e^-5	0.981	INTERGENIC
3L	5866041	3L_5866041_SNP [dm3] 3L_5872941_SNP [dm6]	G	A	9.925e^-5	0.981	NON_SYNONYMOUS_CODING CG5568 UPSTREAM CG18586	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15177214	2L_15177214_SNP [dm3] 2L_15177214_SNP [dm6]	G	A	9.928e^-5	0.981	INTRON CG4168
3L	1913713	3L_1913713_SNP [dm3] 3L_1913713_SNP [dm6]	C	T	9.973e^-5	0.981	INTERGENIC
3L	13400560	3L_13400560_SNP [dm3] 3L_13407460_SNP [dm6]	G	C	9.982e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11384876	2R_11384876_SNP [dm3] 2R_15497371_SNP [dm6]	A	G	1.003e^-4	0.981	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	1.008e^-4	0.981	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	1.009e^-4	0.981	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	13327089	2R_13327089_SNP [dm3] 2R_17439584_SNP [dm6]	G	A	1.010e^-4	0.981	UPSTREAM CG18467 INTRON EDTP
2R	7952764	2R_7952764_INS [dm3] 2R_12065259_INS [dm6]	G	GGGTGGAAAG	1.024e^-4	0.981	INTRON CG8888
3L	6427029	3L_6427029_SNP [dm3] 3L_6433929_SNP [dm6]	C	T	1.033e^-4	0.981	INTRON CG42747
3R	15653819	3R_15653819_SNP [dm3] 3R_19828097_SNP [dm6]	G	A	1.038e^-4	0.981	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3L	11574599	3L_11574599_SNP [dm3] 3L_11581499_SNP [dm6]	T	C	1.040e^-4	0.981	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2L	13804230	2L_13804230_SNP [dm3] 2L_13804230_SNP [dm6]	T	C	1.067e^-4	0.981	INTRON CAH1
3R	13811326	3R_13811326_SNP [dm3] 3R_17985604_SNP [dm6]	A	T	1.072e^-4	0.981	INTRON cpo
3R	17952169	3R_17952169_SNP [dm3] 3R_22126447_SNP [dm6]	C	T	1.075e^-4	0.981	NON_SYNONYMOUS_CODING CG42390	TF binding site mE1_TFBS_cad
2L	21084351	2L_21084351_SNP [dm3] 2L_21084351_SNP [dm6]	T	C	1.084e^-4	0.981	UPSTREAM CG33510 DOWNSTREAM CG33509 INTERGENIC
3L	2402123	3L_2402123_INS [dm3] 3L_2402123_INS [dm6]	C	TT	1.086e^-4	0.981	INTRON CG45186
3L	13548471	3L_13548471_SNP [dm3] 3L_13555371_SNP [dm6]	A	T	1.090e^-4	0.981	INTRON bru-3
3L	1913660	3L_1913660_SNP [dm3] 3L_1913660_SNP [dm6]	T	A	1.105e^-4	0.981	INTERGENIC
3L	7723567	3L_7723567_SNP [dm3] 3L_7730467_SNP [dm6]	G	T	1.111e^-4	0.981	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3822402	X_3822402_SNP [dm3] X_3928369_SNP [dm6]	T	C	1.126e^-4	0.981	INTRON CG42541
3L	15053131	3L_15053131_SNP [dm3] 3L_15060031_SNP [dm6]	C	A	1.126e^-4	0.981	DOWNSTREAM CG13460 INTRON Sytbeta
3L	12986166	3L_12986166_SNP [dm3] 3L_12993066_SNP [dm6]	T	A	1.134e^-4	0.981	INTERGENIC
3L	12235202	3L_12235202_SNP [dm3] 3L_12242102_SNP [dm6]	A	T	1.135e^-4	0.981	INTRON app
3L	10433174	3L_10433174_SNP [dm3] 3L_10440074_SNP [dm6]	A	T	1.137e^-4	0.981	INTERGENIC
2L	22309453	2L_22309453_SNP [dm3] 2L_22309453_SNP [dm6]	G	T	1.147e^-4	0.981	INTRON CG17018	transposable element FlyBase
3L	7284355	3L_7284355_SNP [dm3] 3L_7291255_SNP [dm6]	C	T	1.151e^-4	0.981	INTRON unc-13-4A
2L	4113414	2L_4113414_SNP [dm3] 2L_4113414_SNP [dm6]	G	T	1.157e^-4	0.981	INTRON ed
2R	14912761	2R_14912761_SNP [dm3] 2R_19025256_SNP [dm6]	A	G	1.164e^-4	0.981	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18022170	X_18022170_DEL [dm3] X_18128137_DEL [dm6]	CCGT	G	1.166e^-4	0.981	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5472095	X_5472095_SNP [dm3] X_5578062_SNP [dm6]	A	G	1.170e^-4	0.981	INTERGENIC
2L	1609518	2L_1609518_SNP [dm3] 2L_1609518_SNP [dm6]	A	G	1.173e^-4	0.981	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3R	19283725	3R_19283725_DEL [dm3] 3R_23458003_DEL [dm6]	TG	T	1.176e^-4	0.981	INTRON CG4374	TF binding site mE1_TFBS_chinmo
3R	18574100	3R_18574100_SNP [dm3] 3R_22748378_SNP [dm6]	G	A	1.177e^-4	0.981	NON_SYNONYMOUS_CODING CG31139 UPSTREAM CG17141 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6270163	X_6270163_INS [dm3] X_6376130_INS [dm6]	C	CATTACCATCC...	1.181e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18898719	3L_18898719_INS [dm3] 3L_18905619_INS [dm6]	A	ATCTACC	1.181e^-4	0.981	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	18898724	3L_18898724_SNP [dm3] 3L_18905624_SNP [dm6]	A	G	1.181e^-4	0.981	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	4447828	3L_4447828_SNP [dm3] 3L_4447828_SNP [dm6]	T	C	1.199e^-4	0.981	UTR_3_PRIME CG12607 INTRON CG12607
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	1.205e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3L	6427058	3L_6427058_DEL [dm3] 3L_6433958_DEL [dm6]	TT	T	1.205e^-4	0.981	INTRON CG42747
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	1.206e^-4	0.981	INTERGENIC
3L	1436231	3L_1436231_SNP [dm3] 3L_1436231_SNP [dm6]	G	C	1.208e^-4	0.981	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12175360	3L_12175360_SNP [dm3] 3L_12182260_SNP [dm6]	C	T	1.210e^-4	0.981	SYNONYMOUS_CODING CAH2
3R	9659939	3R_9659939_INS [dm3] 3R_13834217_INS [dm6]	G	GTGTGGGTAAGTAAAG...	1.217e^-4	0.981	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
X	10617339	X_10617339_SNP [dm3] X_10723306_SNP [dm6]	A	C	1.220e^-4	0.981	INTRON CG32676
2L	5082347	2L_5082347_SNP [dm3] 2L_5082347_SNP [dm6]	G	C	1.221e^-4	0.981	INTRON pgant5
3L	17684544	3L_17684544_SNP [dm3] 3L_17691444_SNP [dm6]	G	C	1.221e^-4	0.981	INTRON Ccn
2R	8617644	2R_8617644_SNP [dm3] 2R_12730139_SNP [dm6]	T	G	1.229e^-4	0.981	INTRON CG42663	TF binding site BDTNP1_TFBS_dl
2R	16429233	2R_16429233_SNP [dm3] 2R_20541728_SNP [dm6]	T	C	1.238e^-4	0.981	UPSTREAM CR44652 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15031496	2L_15031496_SNP [dm3] 2L_15031496_SNP [dm6]	A	T	1.248e^-4	0.981	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
3L	12986173	3L_12986173_SNP [dm3] 3L_12993073_SNP [dm6]	G	T	1.260e^-4	0.981	INTERGENIC
3R	6845730	3R_6845730_SNP [dm3] 3R_11020008_SNP [dm6]	G	A	1.262e^-4	0.981	INTRON CG34114
3L	12986181	3L_12986181_SNP [dm3] 3L_12993081_SNP [dm6]	G	C	1.278e^-4	0.981	INTERGENIC
3R	15652088	3R_15652088_SNP [dm3] 3R_19826366_SNP [dm6]	T	C	1.290e^-4	0.981	INTRON bnl
3L	11103935	3L_11103935_SNP [dm3] 3L_11110835_SNP [dm6]	T	C	1.292e^-4	0.981	INTRON CG7638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10433177	3L_10433177_SNP [dm3] 3L_10440077_SNP [dm6]	C	A	1.302e^-4	0.981	INTERGENIC
2L	2287082	2L_2287082_SNP [dm3] 2L_2287082_SNP [dm6]	A	T	1.311e^-4	0.981	UTR_3_PRIME CG42658 UPSTREAM CG31681
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	1.313e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13570878	3R_13570878_SNP [dm3] 3R_17745156_SNP [dm6]	T	C	1.326e^-4	0.981	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7908820	3L_7908820_SNP [dm3] 3L_7915720_SNP [dm6]	A	G	1.327e^-4	0.981	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	10334553	3L_10334553_SNP [dm3] 3L_10341453_SNP [dm6]	T	A	1.328e^-4	0.981	INTERGENIC
2R	13383088	2R_13383088_SNP [dm3] 2R_17495583_SNP [dm6]	C	A	1.337e^-4	0.981	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
2R	13917719	2R_13917719_SNP [dm3] 2R_18030214_SNP [dm6]	A	T	1.339e^-4	0.981	INTERGENIC
3L	20048930	3L_20048930_SNP [dm3] 3L_20055830_SNP [dm6]	C	A	1.339e^-4	0.981	INTERGENIC
3L	2362672	3L_2362672_SNP [dm3] 3L_2362672_SNP [dm6]	T	G	1.339e^-4	0.981	UTR_3_PRIME CG13801
3L	20048931	3L_20048931_SNP [dm3] 3L_20055831_SNP [dm6]	A	T	1.340e^-4	0.981	INTERGENIC
3R	25771313	3R_25771313_SNP [dm3] 3R_29945591_SNP [dm6]	C	T	1.346e^-4	0.981	SYNONYMOUS_CODING CG15523
3R	26189151	3R_26189151_SNP [dm3] 3R_30363429_SNP [dm6]	A	G	1.347e^-4	0.981	UTR_3_PRIME hdc
3L	14259738	3L_14259738_SNP [dm3] 3L_14266638_SNP [dm6]	A	G	1.347e^-4	0.981	INTERGENIC
3R	12352942	3R_12352942_SNP [dm3] 3R_16527220_SNP [dm6]	T	C	1.355e^-4	0.981	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11434063	3L_11434063_SNP [dm3] 3L_11440963_SNP [dm6]	A	G	1.356e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16231997	3L_16231997_SNP [dm3] 3L_16238897_SNP [dm6]	C	T	1.371e^-4	0.981	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16713158	3R_16713158_SNP [dm3] 3R_20887436_SNP [dm6]	T	A	1.375e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3L	17136205	3L_17136205_SNP [dm3] 3L_17143105_SNP [dm6]	A	G	1.380e^-4	0.981	INTRON Rbp6
X	12930851	X_12930851_SNP [dm3] X_13036818_SNP [dm6]	G	A	1.393e^-4	0.981	INTRON rad
3L	17944474	3L_17944474_DEL [dm3] 3L_17951374_DEL [dm6]	CC	C	1.398e^-4	0.981	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3L	8034458	3L_8034458_SNP [dm3] 3L_8041358_SNP [dm6]	T	A	1.399e^-4	0.981	INTRON nmo
3L	18897932	3L_18897932_INS [dm3] 3L_18904832_INS [dm6]	A	AC	1.399e^-4	0.981	UTR_5_PRIME CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	8214585	3L_8214585_SNP [dm3] 3L_8221485_SNP [dm6]	A	G	1.400e^-4	0.981	UPSTREAM CG13678 INTERGENIC
3L	2362668	3L_2362668_SNP [dm3] 3L_2362668_SNP [dm6]	A	T	1.417e^-4	0.981	UTR_3_PRIME CG13801
X	6306865	X_6306865_SNP [dm3] X_6412832_SNP [dm6]	G	A	1.421e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	17324201	X_17324201_SNP [dm3] X_17430168_SNP [dm6]	T	C	1.422e^-4	0.981	INTRON CG12994
2R	17756543	2R_17756543_SNP [dm3] 2R_21869038_SNP [dm6]	T	G	1.436e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11073309	2L_11073309_SNP [dm3] 2L_11073309_SNP [dm6]	A	G	1.439e^-4	0.981	INTERGENIC
3R	18499204	3R_18499204_SNP [dm3] 3R_22673482_SNP [dm6]	T	A	1.451e^-4	0.981	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	7284343	3L_7284343_INS [dm3] 3L_7291243_INS [dm6]	C	CAA	1.465e^-4	0.981	INTRON unc-13-4A
3L	2052550	3L_2052550_SNP [dm3] 3L_2052550_SNP [dm6]	G	A	1.488e^-4	0.981	INTRON sls
2R	18327550	2R_18327550_SNP [dm3] 2R_22440045_SNP [dm6]	A	G	1.491e^-4	0.981	INTERGENIC
X	4066478	X_4066478_SNP [dm3] X_4172445_SNP [dm6]	A	C	1.493e^-4	0.981	INTRON Fas2
3R	6651940	3R_6651940_SNP [dm3] 3R_10826218_SNP [dm6]	A	G	1.499e^-4	0.981	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17362189	X_17362189_INS [dm3] X_17468156_INS [dm6]	T	CGCCATTCCCCATTC...	1.499e^-4	0.981	INTRON CG43658
X	17362206	X_17362206_SNP [dm3] X_17468173_SNP [dm6]	C	T	1.499e^-4	0.981	INTRON CG43658
X	12930948	X_12930948_SNP [dm3] X_13036915_SNP [dm6]	G	A	1.502e^-4	0.981	INTRON rad
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	1.505e^-4	0.981	INTERGENIC
3R	15633268	3R_15633268_SNP [dm3] 3R_19807546_SNP [dm6]	A	C	1.507e^-4	0.981	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15650797	3R_15650797_SNP [dm3] 3R_19825075_SNP [dm6]	T	C	1.514e^-4	0.981	INTRON bnl
2L	11079136	2L_11079136_SNP [dm3] 2L_11079136_SNP [dm6]	A	T	1.515e^-4	0.981	INTRON AstC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	25771130	3R_25771130_SNP [dm3] 3R_29945408_SNP [dm6]	C	A	1.515e^-4	0.981	SYNONYMOUS_CODING CG15523
3R	25771472	3R_25771472_SNP [dm3] 3R_29945750_SNP [dm6]	G	T	1.515e^-4	0.981	SYNONYMOUS_CODING CG15523
X	17362177	X_17362177_SNP [dm3] X_17468144_SNP [dm6]	T	C	1.520e^-4	0.981	INTRON CG43658
3L	18661636	3L_18661636_SNP [dm3] 3L_18668536_SNP [dm6]	A	T	1.521e^-4	0.981	UTR_3_PRIME Capr DOWNSTREAM CG42495
2R	16083719	2R_16083719_SNP [dm3] 2R_20196214_SNP [dm6]	C	T	1.523e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17127233	2R_17127233_SNP [dm3] 2R_21239728_SNP [dm6]	A	G	1.526e^-4	0.981	INTRON ASPP
3R	16713161	3R_16713161_SNP [dm3] 3R_20887439_SNP [dm6]	C	A	1.528e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3L	13309029	3L_13309029_SNP [dm3] 3L_13315929_SNP [dm6]	C	T	1.531e^-4	0.981	INTERGENIC
3R	17255400	3R_17255400_SNP [dm3] 3R_21429678_SNP [dm6]	C	T	1.537e^-4	0.981	INTRON lbl	TF binding site BDTNP1_TFBS_da
X	5472092	X_5472092_SNP [dm3] X_5578059_SNP [dm6]	G	C	1.539e^-4	0.981	INTERGENIC
3L	12732853	3L_12732853_SNP [dm3] 3L_12739753_SNP [dm6]	T	C	1.555e^-4	0.981	SYNONYMOUS_CODING Ptp69D	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10090925	3L_10090925_SNP [dm3] 3L_10097825_SNP [dm6]	G	A	1.562e^-4	0.981	SYNONYMOUS_CODING CG42825 INTRON dpr6
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	1.582e^-4	0.981	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15999675	X_15999675_INS [dm3] X_16105642_INS [dm6]	T	TTA	1.587e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	15345758	3L_15345758_SNP [dm3] 3L_15352658_SNP [dm6]	C	T	1.589e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13353105	3L_13353105_SNP [dm3] 3L_13360005_SNP [dm6]	C	T	1.590e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	5985628	X_5985628_SNP [dm3] X_6091595_SNP [dm6]	C	T	1.599e^-4	0.981	UPSTREAM Nep1 & 1 other DOWNSTREAM CR44959 INTRON Nep1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14154451	3L_14154451_INS [dm3] 3L_14161351_INS [dm6]	A	AA	1.613e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
3L	10302489	3L_10302489_SNP [dm3] 3L_10309389_SNP [dm6]	T	C	1.613e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1277747	3L_1277747_SNP [dm3] 3L_1277747_SNP [dm6]	A	C	1.621e^-4	0.981	INTRON CG32333
3R	15898889	3R_15898889_SNP [dm3] 3R_20073167_SNP [dm6]	A	T	1.624e^-4	0.981	INTERGENIC
X	17040030	X_17040030_SNP [dm3] X_17145997_SNP [dm6]	G	A	1.628e^-4	0.981	UPSTREAM snoRNA:Psi18S-1854c & 3 others DOWNSTREAM snoRNA:Psi28S-1135d & 3 others INTRON RpS5a EXON snoRNA:Psi18S-1854a
3R	9707112	3R_9707112_SNP [dm3] 3R_13881390_SNP [dm6]	A	T	1.630e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	13947302	2R_13947302_SNP [dm3] 2R_18059797_SNP [dm6]	A	G	1.637e^-4	0.981	UPSTREAM CR45314 INTERGENIC
2R	16083698	2R_16083698_SNP [dm3] 2R_20196193_SNP [dm6]	A	G	1.642e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16083730	2R_16083730_SNP [dm3] 2R_20196225_SNP [dm6]	T	A	1.642e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15633376	3R_15633376_SNP [dm3] 3R_19807654_SNP [dm6]	T	C	1.646e^-4	0.981	INTRON bnl	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	5116056	3R_5116056_SNP [dm3] 3R_9290334_SNP [dm6]	G	A	1.648e^-4	0.981	INTERGENIC
3R	5116058	3R_5116058_SNP [dm3] 3R_9290336_SNP [dm6]	A	C	1.648e^-4	0.981	INTERGENIC
3L	7712117	3L_7712117_SNP [dm3] 3L_7719017_SNP [dm6]	T	G	1.652e^-4	0.981	UPSTREAM CG12262 & 1 other INTRON CG32373
2R	12804957	2R_12804957_DEL [dm3] 2R_16917452_DEL [dm6]	TG	T	1.660e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_ftz_f1
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	1.669e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15808618	X_15808618_SNP [dm3] X_15914585_SNP [dm6]	A	T	1.683e^-4	0.981	INTRON CG8909
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	1.684e^-4	0.981	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	7354343	2L_7354343_INS [dm3] 2L_7354343_INS [dm6]	C	CAACA	1.691e^-4	0.981	INTERGENIC
3R	26858398	3R_26858398_SNP [dm3] 3R_31032676_SNP [dm6]	T	A	1.693e^-4	0.981	INTERGENIC
X	14583755	X_14583755_SNP [dm3] X_14689722_SNP [dm6]	A	T	1.697e^-4	0.981	UTR_3_PRIME NetB
3R	7833336	3R_7833336_SNP [dm3] 3R_12007614_SNP [dm6]	T	C	1.699e^-4	0.981	UTR_3_PRIME KLHL18 DOWNSTREAM KLHL18
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	1.709e^-4	0.981	INTRON CG43174
2R	16702640	2R_16702640_SNP [dm3] 2R_20815135_SNP [dm6]	G	C	1.717e^-4	0.981	INTERGENIC
2R	14912746	2R_14912746_SNP [dm3] 2R_19025241_SNP [dm6]	A	T	1.728e^-4	0.981	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2097008	2L_2097008_SNP [dm3] 2L_2097008_SNP [dm6]	G	A	1.740e^-4	0.981	INTRON dpr3
3R	13985549	3R_13985549_SNP [dm3] 3R_18159827_SNP [dm6]	T	C	1.746e^-4	0.981	DOWNSTREAM CG14315 EXON CR45104
X	13743086	X_13743086_DEL [dm3] X_13849053_DEL [dm6]	TCATAAACCT	T	1.750e^-4	0.981	UTR_3_PRIME mamo
3L	18898741	3L_18898741_SNP [dm3] 3L_18905641_SNP [dm6]	G	A	1.753e^-4	0.981	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	1.758e^-4	0.981	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
3L	12986144	3L_12986144_SNP [dm3] 3L_12993044_SNP [dm6]	A	G	1.767e^-4	0.981	INTERGENIC
2R	17579719	2R_17579719_SNP [dm3] 2R_21692214_SNP [dm6]	A	T	1.781e^-4	0.981	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2L	2011588	2L_2011588_SNP [dm3] 2L_2011588_SNP [dm6]	T	C	1.787e^-4	0.981	UPSTREAM CG4238 & 2 others INTRON CG4238
2L	8330528	2L_8330528_SNP [dm3] 2L_8330528_SNP [dm6]	A	G	1.790e^-4	0.981	INTRON CG14275
3L	13526850	3L_13526850_SNP [dm3] 3L_13533750_SNP [dm6]	T	G	1.795e^-4	0.981	UTR_3_PRIME bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3857356	2L_3857356_SNP [dm3] 2L_3857356_SNP [dm6]	T	G	1.807e^-4	0.981	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
3L	1913868	3L_1913868_SNP [dm3] 3L_1913868_SNP [dm6]	C	T	1.810e^-4	0.981	INTERGENIC	insulator Insulator_Class_II.mE01
3L	12222972	3L_12222972_DEL [dm3] 3L_12229872_DEL [dm6]	TT	T	1.813e^-4	0.981	INTRON app
3L	15210433	3L_15210433_SNP [dm3] 3L_15217333_SNP [dm6]	G	T	1.819e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26573663	3R_26573663_SNP [dm3] 3R_30747941_SNP [dm6]	A	C	1.822e^-4	0.981	UPSTREAM CR43238 INTERGENIC
3L	8028086	3L_8028086_SNP [dm3] 3L_8034986_SNP [dm6]	T	C	1.829e^-4	0.981	INTRON nmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	13743068	X_13743068_DEL [dm3] X_13849035_DEL [dm6]	TT	T	1.830e^-4	0.981	UTR_3_PRIME mamo
3L	5927148	3L_5927148_SNP [dm3] 3L_5934048_SNP [dm6]	A	G	1.833e^-4	0.981	SPLICE_SITE_REGION CG33993 INTRON CG33993
3L	11544582	3L_11544582_SNP [dm3] 3L_11551482_SNP [dm6]	C	T	1.839e^-4	0.981	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	3429714	2R_3429714_SNP [dm3] 2R_7542209_SNP [dm6]	C	T	1.846e^-4	0.981	INTRON Corin
3L	12175352	3L_12175352_SNP [dm3] 3L_12182252_SNP [dm6]	T	C	1.866e^-4	0.981	SYNONYMOUS_CODING CAH2
3L	4185889	3L_4185889_SNP [dm3] 3L_4185889_SNP [dm6]	T	A	1.872e^-4	0.981	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3R	26190347	3R_26190347_SNP [dm3] 3R_30364625_SNP [dm6]	T	C	1.881e^-4	0.981	UTR_3_PRIME hdc
X	15999934	X_15999934_INS [dm3] X_16105901_INS [dm6]	C	CT	1.883e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	11251731	3R_11251731_SNP [dm3] 3R_15426009_SNP [dm6]	C	T	1.884e^-4	0.981	INTRON CG6118
3R	20352870	3R_20352870_SNP [dm3] 3R_24527148_SNP [dm6]	C	T	1.903e^-4	0.981	SYNONYMOUS_CODING CG13618 UPSTREAM CG6607
3L	12986142	3L_12986142_SNP [dm3] 3L_12993042_SNP [dm6]	T	C	1.916e^-4	0.981	INTERGENIC
3R	5690294	3R_5690294_SNP [dm3] 3R_9864572_SNP [dm6]	C	T	1.917e^-4	0.981	INTRON Teh1
X	21359368	X_21359368_SNP [dm3] X_21488341_SNP [dm6]	G	A	1.918e^-4	0.981	INTERGENIC
2R	18434857	2R_18434857_SNP [dm3] 2R_22547352_SNP [dm6]	A	C	1.931e^-4	0.981	UPSTREAM px INTRON px
3L	13392983	3L_13392983_SNP [dm3] 3L_13399883_SNP [dm6]	G	A	1.948e^-4	0.981	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13392998	3L_13392998_SNP [dm3] 3L_13399898_SNP [dm6]	A	G	1.948e^-4	0.981	SYNONYMOUS_CODING sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8332986	2L_8332986_SNP [dm3] 2L_8332986_SNP [dm6]	A	T	1.955e^-4	0.981	DOWNSTREAM CG14275 INTERGENIC
X	8763899	X_8763899_SNP [dm3] X_8869866_SNP [dm6]	C	T	1.958e^-4	0.981	SYNONYMOUS_CODING CG12075	TF binding site mE1_TFBS_chinmo
3R	27588730	3R_27588730_SNP [dm3] 3R_31763008_SNP [dm6]	A	G	1.961e^-4	0.981	DOWNSTREAM CG2150 INTERGENIC
3L	18585242	3L_18585242_SNP [dm3] 3L_18592142_SNP [dm6]	T	C	1.962e^-4	0.981	DOWNSTREAM term INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18585243	3L_18585243_SNP [dm3] 3L_18592143_SNP [dm6]	C	T	1.962e^-4	0.981	DOWNSTREAM term INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6508200	3L_6508200_SNP [dm3] 3L_6515100_SNP [dm6]	C	G	1.962e^-4	0.981	INTRON sfl
3L	3449407	3L_3449407_SNP [dm3] 3L_3449407_SNP [dm6]	T	C	1.967e^-4	0.981	INTRON eIF5B
2R	7296155	2R_7296155_SNP [dm3] 2R_11408650_SNP [dm6]	C	T	1.967e^-4	0.981	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
3R	25771320	3R_25771320_SNP [dm3] 3R_29945598_SNP [dm6]	T	C	1.976e^-4	0.981	SYNONYMOUS_CODING CG15523
3L	15283753	3L_15283753_SNP [dm3] 3L_15290653_SNP [dm6]	G	T	1.980e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17579709	2R_17579709_SNP [dm3] 2R_21692204_SNP [dm6]	T	A	1.980e^-4	0.981	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3L	1078558	3L_1078558_SNP [dm3] 3L_1078558_SNP [dm6]	A	G	1.984e^-4	0.981	INTRON bab1	TF binding site mE1_TFBS_HSA
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	1.988e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	16824691	X_16824691_SNP [dm3] X_16930658_SNP [dm6]	T	C	1.988e^-4	0.981	INTRON CG4928
2L	17304135	2L_17304135_SNP [dm3] 2L_17304135_SNP [dm6]	T	C	1.995e^-4	0.981	INTERGENIC
3L	18372496	3L_18372496_SNP [dm3] 3L_18379396_SNP [dm6]	A	T	1.997e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	1203424	2L_1203424_SNP [dm3] 2L_1203424_SNP [dm6]	A	G	1.999e^-4	0.981	UPSTREAM CG14342 INTERGENIC
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	2.001e^-4	0.981	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8194614	2L_8194614_SNP [dm3] 2L_8194614_SNP [dm6]	G	T	2.006e^-4	0.981	UTR_3_PRIME CG8475 INTRON CG8475 EXON CR44116
3L	1914879	3L_1914879_SNP [dm3] 3L_1914879_SNP [dm6]	G	T	2.011e^-4	0.981	INTERGENIC
2R	20117702	2R_20117702_SNP [dm3] 2R_24230179_SNP [dm6]	A	T	2.011e^-4	0.981	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20624864	2R_20624864_SNP [dm3] 2R_24737341_SNP [dm6]	C	T	2.017e^-4	0.981	UPSTREAM Mid1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10460269	3R_10460269_SNP [dm3] 3R_14634547_SNP [dm6]	T	A	2.019e^-4	0.981	INTRON CG7886 & 1 other	TF binding site mE1_TFBS_inv
2R	7226624	2R_7226624_SNP [dm3] 2R_11339119_SNP [dm6]	T	C	2.027e^-4	0.981	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	6543510	3L_6543510_SNP [dm3] 3L_6550410_SNP [dm6]	T	A	2.031e^-4	0.981	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	19649946	3R_19649946_SNP [dm3] 3R_23824224_SNP [dm6]	A	T	2.032e^-4	0.981	INTRON CG34355
2L	5805482	2L_5805482_SNP [dm3] 2L_5805482_SNP [dm6]	C	T	2.035e^-4	0.981	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	398002	3L_398002_DEL [dm3] 3L_398002_DEL [dm6]	CTC	C	2.035e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22237000	3R_22237000_SNP [dm3] 3R_26411278_SNP [dm6]	T	C	2.045e^-4	0.981	INTERGENIC
2L	6778233	2L_6778233_SNP [dm3] 2L_6778233_SNP [dm6]	C	T	2.050e^-4	0.981	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
3R	4420274	3R_4420274_SNP [dm3] 3R_8594552_SNP [dm6]	T	A	2.067e^-4	0.981	INTRON 5-HT2B
3L	1257753	3L_1257753_SNP [dm3] 3L_1257753_SNP [dm6]	C	T	2.072e^-4	0.981	INTRON CG9134
3L	4185543	3L_4185543_SNP [dm3] 3L_4185543_SNP [dm6]	T	C	2.079e^-4	0.981	UPSTREAM Teh3 DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
2L	9646498	2L_9646498_SNP [dm3] 2L_9646498_SNP [dm6]	A	T	2.084e^-4	0.981	INTRON Apoltp
3R	16713269	3R_16713269_SNP [dm3] 3R_20887547_SNP [dm6]	T	C	2.085e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9848568	3L_9848568_SNP [dm3] 3L_9855468_SNP [dm6]	A	T	2.098e^-4	0.981	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	11930742	2L_11930742_DEL [dm3] 2L_11930742_DEL [dm6]	ATTTTCCCACTA...	A	2.100e^-4	0.981	INTERGENIC
2R	10193337	2R_10193337_SNP [dm3] 2R_14305832_SNP [dm6]	G	A	2.104e^-4	0.981	INTERGENIC
2L	2795754	2L_2795754_SNP [dm3] 2L_2795754_SNP [dm6]	A	G	2.105e^-4	0.981	UPSTREAM Syt1 INTRON Syt1
2L	228339	2L_228339_SNP [dm3] 2L_228339_SNP [dm6]	T	A	2.105e^-4	0.981	INTRON kis EXON CR44221
X	3918948	X_3918948_SNP [dm3] X_4024915_SNP [dm6]	G	A	2.120e^-4	0.981	INTERGENIC
3R	10728519	3R_10728519_DEL [dm3] 3R_14902797_DEL [dm6]	AA	A	2.125e^-4	0.981	UTR_3_PRIME VhaPPA1-1
3L	7712147	3L_7712147_SNP [dm3] 3L_7719047_SNP [dm6]	T	A	2.129e^-4	0.981	UPSTREAM CG12262 & 1 other INTRON CG32373
3L	4186271	3L_4186271_SNP [dm3] 3L_4186271_SNP [dm6]	T	C	2.134e^-4	0.981	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
3L	5869907	3L_5869907_SNP [dm3] 3L_5876807_SNP [dm6]	C	T	2.147e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15322780	2R_15322780_SNP [dm3] 2R_19435275_SNP [dm6]	A	T	2.153e^-4	0.981	INTRON Fak
3R	3153385	3R_3153385_SNP [dm3] 3R_7327663_SNP [dm6]	T	A	2.154e^-4	0.981	UPSTREAM CR44336 INTERGENIC
3L	13253227	3L_13253227_SNP [dm3] 3L_13260127_SNP [dm6]	G	C	2.155e^-4	0.981	INTRON caps
3L	12058689	3L_12058689_SNP [dm3] 3L_12065589_SNP [dm6]	G	A	2.157e^-4	0.981	UPSTREAM rols INTERGENIC
X	16824705	X_16824705_SNP [dm3] X_16930672_SNP [dm6]	C	T	2.157e^-4	0.981	INTRON CG4928
3R	17018223	3R_17018223_SNP [dm3] 3R_21192501_SNP [dm6]	A	T	2.159e^-4	0.981	INTRON SNF4Agamma
X	5527745	X_5527745_SNP [dm3] X_5633712_SNP [dm6]	G	T	2.160e^-4	0.981	INTRON CG42492	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	18636407	3R_18636407_SNP [dm3] 3R_22810685_SNP [dm6]	T	C	2.164e^-4	0.981	INTERGENIC
2R	16702662	2R_16702662_SNP [dm3] 2R_20815157_SNP [dm6]	T	C	2.179e^-4	0.981	INTERGENIC
3L	14447511	3L_14447511_SNP [dm3] 3L_14454411_SNP [dm6]	C	A	2.202e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25771085	3R_25771085_SNP [dm3] 3R_29945363_SNP [dm6]	T	C	2.206e^-4	0.981	SPLICE_SITE_REGION CG15523 INTRON CG15523
X	20751294	X_20751294_SNP [dm3] X_20880267_SNP [dm6]	T	C	2.210e^-4	0.981	INTRON shakB	transposable element FlyBase
2R	17416978	2R_17416978_DEL [dm3] 2R_21529473_DEL [dm6]	AGCTGGTTAAGTA...	A	2.214e^-4	0.981	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	17332992	3R_17332992_SNP [dm3] 3R_21507270_SNP [dm6]	A	G	2.220e^-4	0.981	SYNONYMOUS_CODING C15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7908574	3L_7908574_SNP [dm3] 3L_7915474_SNP [dm6]	T	G	2.223e^-4	0.981	UTR_5_PRIME CG32368 UPSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26429714	3R_26429714_SNP [dm3] 3R_30603992_SNP [dm6]	C	A	2.225e^-4	0.981	UTR_3_PRIME CG31021 UPSTREAM PH4alphaNE3
3L	18573428	3L_18573428_SNP [dm3] 3L_18580328_SNP [dm6]	T	A	2.227e^-4	0.981	INTERGENIC
3L	14447510	3L_14447510_SNP [dm3] 3L_14454410_SNP [dm6]	C	T	2.229e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23178850	3R_23178850_SNP [dm3] 3R_27353128_SNP [dm6]	T	G	2.234e^-4	0.981	INTRON CG42534
3R	27432627	3R_27432627_SNP [dm3] 3R_31606905_SNP [dm6]	G	A	2.240e^-4	0.981	INTRON CycG	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11252588	3R_11252588_SNP [dm3] 3R_15426866_SNP [dm6]	C	T	2.245e^-4	0.981	UTR_5_PRIME CG6118 INTRON CG6118
2L	19246806	2L_19246806_SNP [dm3] 2L_19246806_SNP [dm6]	C	T	2.247e^-4	0.981	INTERGENIC
3R	22722136	3R_22722136_SNP [dm3] 3R_26896414_SNP [dm6]	G	A	2.249e^-4	0.981	INTRON T48	regulatory region REDfly_CRMs
X	12169327	X_12169327_SNP [dm3] X_12275294_SNP [dm6]	T	C	2.253e^-4	0.981	DOWNSTREAM CG45603 INTRON Ten-a
2R	10232688	2R_10232688_INS [dm3] 2R_14345183_INS [dm6]	A	AC	2.253e^-4	0.981	INTRON Shroom
3R	15652970	3R_15652970_SNP [dm3] 3R_19827248_SNP [dm6]	G	A	2.258e^-4	0.981	INTRON bnl	TF binding site mE1_TFBS_HSA
3L	499603	3L_499603_SNP [dm3] 3L_499603_SNP [dm6]	C	T	2.270e^-4	0.981	DOWNSTREAM CG34267 INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3431923	2R_3431923_SNP [dm3] 2R_7544418_SNP [dm6]	A	C	2.280e^-4	0.981	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5940318	2L_5940318_SNP [dm3] 2L_5940318_SNP [dm6]	A	G	2.280e^-4	0.981	DOWNSTREAM CR45288 INTERGENIC
3L	14541067	3L_14541067_DEL [dm3] 3L_14547967_DEL [dm6]	TACTTGT	T	2.285e^-4	0.981	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15653815	3R_15653815_SNP [dm3] 3R_19828093_SNP [dm6]	C	G	2.290e^-4	0.981	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	25300164	3R_25300164_SNP [dm3] 3R_29474442_SNP [dm6]	C	A	2.291e^-4	0.981	INTRON Ptp99A
2L	11484375	2L_11484375_SNP [dm3] 2L_11484375_SNP [dm6]	T	C	2.298e^-4	0.981	UPSTREAM CG43355 & 1 other INTERGENIC
3L	3007860	3L_3007860_SNP [dm3] 3L_3007860_SNP [dm6]	T	G	2.303e^-4	0.981	INTRON FMRFaR
2R	16212317	2R_16212317_SNP [dm3] 2R_20324812_SNP [dm6]	T	G	2.307e^-4	0.981	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
2L	21080875	2L_21080875_SNP [dm3] 2L_21080875_SNP [dm6]	T	C	2.309e^-4	0.981	UTR_3_PRIME tadr DOWNSTREAM CG33511	TF binding site mE1_TFBS_cad
2R	20116592	2R_20116592_SNP [dm3] 2R_24229069_SNP [dm6]	C	T	2.311e^-4	0.981	INTRON CG30419	TF binding site mE1_TFBS_chinmo
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	2.312e^-4	0.981	INTERGENIC
X	10048862	X_10048862_SNP [dm3] X_10154829_SNP [dm6]	C	T	2.314e^-4	0.981	UTR_3_PRIME CG12645 EXON CR44894
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	2.317e^-4	0.981	INTRON CG10663
3R	23423519	3R_23423519_DEL [dm3] 3R_27597797_DEL [dm6]	AA	A	2.328e^-4	0.981	UTR_3_PRIME dsd	TF binding site mE1_TFBS_HSA
2L	6560705	2L_6560705_SNP [dm3] 2L_6560705_SNP [dm6]	G	A	2.337e^-4	0.981	NON_SYNONYMOUS_CODING CG9596 DOWNSTREAM CG11043	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3429018	2R_3429018_SNP [dm3] 2R_7541513_SNP [dm6]	C	A	2.347e^-4	0.981	INTRON Corin
2R	3429218	2R_3429218_SNP [dm3] 2R_7541713_SNP [dm6]	C	T	2.347e^-4	0.981	INTRON Corin
2R	3429763	2R_3429763_SNP [dm3] 2R_7542258_SNP [dm6]	G	A	2.347e^-4	0.981	INTRON Corin
2R	3431865	2R_3431865_SNP [dm3] 2R_7544360_SNP [dm6]	T	A	2.347e^-4	0.981	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3433484	2R_3433484_SNP [dm3] 2R_7545979_SNP [dm6]	T	C	2.347e^-4	0.981	START_GAINED Corin UTR_5_PRIME Corin INTRON Corin
3L	12986207	3L_12986207_SNP [dm3] 3L_12993107_SNP [dm6]	T	C	2.366e^-4	0.981	INTERGENIC
2L	9769329	2L_9769329_SNP [dm3] 2L_9769329_SNP [dm6]	G	A	2.374e^-4	0.981	SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4417105	2L_4417105_SNP [dm3] 2L_4417105_SNP [dm6]	T	C	2.376e^-4	0.981	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	2.379e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	3432923	2R_3432923_SNP [dm3] 2R_7545418_SNP [dm6]	T	C	2.383e^-4	0.981	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17883389	3R_17883389_SNP [dm3] 3R_22057667_SNP [dm6]	A	G	2.393e^-4	0.981	INTRON how	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2511566	3L_2511566_SNP [dm3] 3L_2511566_SNP [dm6]	T	C	2.395e^-4	0.981	SYNONYMOUS_CODING Spn
2R	19128834	2R_19128834_SNP [dm3] 2R_23241311_SNP [dm6]	T	A	2.398e^-4	0.981	INTERGENIC
2R	17758221	2R_17758221_INS [dm3] 2R_21870716_INS [dm6]	G	GTATGACGAGGGG...	2.403e^-4	0.981	INTERGENIC
X	12931090	X_12931090_SNP [dm3] X_13037057_SNP [dm6]	T	G	2.408e^-4	0.981	INTRON rad
3R	16289156	3R_16289156_SNP [dm3] 3R_20463434_SNP [dm6]	T	C	2.411e^-4	0.981	INTRON Gfrl
2L	9646582	2L_9646582_SNP [dm3] 2L_9646582_SNP [dm6]	C	T	2.414e^-4	0.981	SYNONYMOUS_CODING Apoltp
3L	1250242	3L_1250242_SNP [dm3] 3L_1250242_SNP [dm6]	C	T	2.423e^-4	0.981	UTR_3_PRIME Sac1 UPSTREAM CG9129
3R	24541061	3R_24541061_SNP [dm3] 3R_28715339_SNP [dm6]	C	A	2.439e^-4	0.981	INTRON htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	14353924	2R_14353924_SNP [dm3] 2R_18466419_SNP [dm6]	G	C	2.447e^-4	0.981	INTRON CG30116
2R	11281951	2R_11281951_SNP [dm3] 2R_15394446_SNP [dm6]	G	A	2.448e^-4	0.981	INTERGENIC
X	8548315	X_8548315_SNP [dm3] X_8654282_SNP [dm6]	G	A	2.453e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
2L	21084334	2L_21084334_SNP [dm3] 2L_21084334_SNP [dm6]	T	A	2.455e^-4	0.981	UPSTREAM CG33510 DOWNSTREAM CG33509 INTERGENIC
2R	3432108	2R_3432108_SNP [dm3] 2R_7544603_SNP [dm6]	C	A	2.493e^-4	0.981	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	432190	3L_432190_SNP [dm3] 3L_432190_SNP [dm6]	T	A	2.496e^-4	0.981	DOWNSTREAM CG13891 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3425376	2R_3425376_SNP [dm3] 2R_7537871_SNP [dm6]	T	C	2.497e^-4	0.981	SYNONYMOUS_CODING CG2137 DOWNSTREAM CG1598	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9769296	2L_9769296_SNP [dm3] 2L_9769296_SNP [dm6]	A	C	2.499e^-4	0.981	SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17042378	X_17042378_SNP [dm3] X_17148345_SNP [dm6]	G	A	2.506e^-4	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	15487482	X_15487482_SNP [dm3] X_15593449_SNP [dm6]	T	C	2.508e^-4	0.981	START_GAINED CG9220 UTR_5_PRIME CG9220 UPSTREAM CG9220	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	7938468	2R_7938468_DEL [dm3] 2R_12050963_DEL [dm6]	TCT	T	2.510e^-4	0.981	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13391049	X_13391049_SNP [dm3] X_13497016_SNP [dm6]	A	G	2.511e^-4	0.981	INTRON Neto
X	4066456	X_4066456_SNP [dm3] X_4172423_SNP [dm6]	G	C	2.512e^-4	0.981	INTRON Fas2
X	12931259	X_12931259_SNP [dm3] X_13037226_SNP [dm6]	A	C	2.513e^-4	0.981	INTRON rad
2L	5805164	2L_5805164_SNP [dm3] 2L_5805164_SNP [dm6]	C	A	2.519e^-4	0.981	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7784170	2R_7784170_SNP [dm3] 2R_11896665_SNP [dm6]	G	A	2.529e^-4	0.981	SYNONYMOUS_CODING MCPH1 DOWNSTREAM Ef1alpha48D & 1 other
2R	12064823	2R_12064823_SNP [dm3] 2R_16177318_SNP [dm6]	G	C	2.543e^-4	0.981	INTRON Ptp52F
3L	8792198	3L_8792198_SNP [dm3] 3L_8799098_SNP [dm6]	G	T	2.543e^-4	0.981	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
2R	17651903	2R_17651903_SNP [dm3] 2R_21764398_SNP [dm6]	A	G	2.544e^-4	0.981	NON_SYNONYMOUS_CODING CG43982 UPSTREAM CR43983 DOWNSTREAM CR43984	TF binding site BDTNP1_TFBS_dl
3R	8433065	3R_8433065_SNP [dm3] 3R_12607343_SNP [dm6]	G	T	2.550e^-4	0.981	INTERGENIC
3L	3499353	3L_3499353_SNP [dm3] 3L_3499353_SNP [dm6]	C	A	2.551e^-4	0.981	INTRON CG42324
3R	5863971	3R_5863971_SNP [dm3] 3R_10038249_SNP [dm6]	A	G	2.551e^-4	0.981	INTRON Mical
3L	18372494	3L_18372494_SNP [dm3] 3L_18379394_SNP [dm6]	A	G	2.553e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	11589245	3L_11589245_SNP [dm3] 3L_11596145_SNP [dm6]	T	G	2.556e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2323021	3L_2323021_SNP [dm3] 3L_2323021_SNP [dm6]	T	C	2.559e^-4	0.981	INTRON MsR1
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	2.559e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	13391000	X_13391000_INS [dm3] X_13496967_INS [dm6]	A	AAAGGGGGA	2.577e^-4	0.981	INTRON Neto
2R	11626414	2R_11626414_SNP [dm3] 2R_15738909_SNP [dm6]	G	A	2.580e^-4	0.981	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	2.587e^-4	0.981	DOWNSTREAM CG34338 INTERGENIC
3L	517322	3L_517322_SNP [dm3] 3L_517322_SNP [dm6]	G	T	2.590e^-4	0.981	INTRON klar
2R	16212400	2R_16212400_SNP [dm3] 2R_20324895_SNP [dm6]	T	C	2.597e^-4	0.981	NON_SYNONYMOUS_CODING CG8920 DOWNSTREAM CG8920 & 1 other	TF binding site mE1_TFBS_cad
X	17042494	X_17042494_SNP [dm3] X_17148461_SNP [dm6]	G	A	2.599e^-4	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	4066481	X_4066481_SNP [dm3] X_4172448_SNP [dm6]	T	C	2.600e^-4	0.981	INTRON Fas2
2L	8235368	2L_8235368_SNP [dm3] 2L_8235368_SNP [dm6]	C	T	2.605e^-4	0.981	INTRON Pvr
2R	12129675	2R_12129675_SNP [dm3] 2R_16242170_SNP [dm6]	G	A	2.606e^-4	0.981	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
2L	8037745	2L_8037745_SNP [dm3] 2L_8037745_SNP [dm6]	T	C	2.606e^-4	0.981	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13391249	X_13391249_SNP [dm3] X_13497216_SNP [dm6]	A	G	2.610e^-4	0.981	INTRON Neto
2L	2011595	2L_2011595_SNP [dm3] 2L_2011595_SNP [dm6]	C	A	2.611e^-4	0.981	UPSTREAM CG4238 & 2 others INTRON CG4238
X	4066480	X_4066480_SNP [dm3] X_4172447_SNP [dm6]	T	C	2.616e^-4	0.981	INTRON Fas2
X	12930981	X_12930981_SNP [dm3] X_13036948_SNP [dm6]	A	T	2.623e^-4	0.981	INTRON rad
3L	16235236	3L_16235236_SNP [dm3] 3L_16242136_SNP [dm6]	T	C	2.624e^-4	0.981	INTERGENIC
3L	16691806	3L_16691806_SNP [dm3] 3L_16698706_SNP [dm6]	G	C	2.625e^-4	0.981	DOWNSTREAM CR45179 INTRON Lasp & 1 other
3R	20123136	3R_20123136_SNP [dm3] 3R_24297414_SNP [dm6]	T	G	2.625e^-4	0.981	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	17327183	2R_17327183_SNP [dm3] 2R_21439678_SNP [dm6]	C	T	2.625e^-4	0.981	INTRON Sdc
2L	4113413	2L_4113413_SNP [dm3] 2L_4113413_SNP [dm6]	T	A	2.629e^-4	0.981	INTRON ed
X	3822312	X_3822312_SNP [dm3] X_3928279_SNP [dm6]	T	G	2.643e^-4	0.981	INTRON CG42541
2R	20745347	2R_20745347_DEL [dm3] 2R_24857824_DEL [dm6]	GCG	G	2.651e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11205706	3R_11205706_SNP [dm3] 3R_15379984_SNP [dm6]	T	A	2.656e^-4	0.981	INTRON Rbp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10045511	3L_10045511_SNP [dm3] 3L_10052411_SNP [dm6]	C	A	2.657e^-4	0.981	INTRON dpr6
3L	10045512	3L_10045512_DEL [dm3] 3L_10052412_DEL [dm6]	TC	T	2.657e^-4	0.981	INTRON dpr6
3R	25779794	3R_25779794_SNP [dm3] 3R_29954072_SNP [dm6]	A	G	2.664e^-4	0.981	SYNONYMOUS_CODING TkR99D
3L	5627843	3L_5627843_SNP [dm3] 3L_5634743_SNP [dm6]	A	G	2.666e^-4	0.981	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	14259825	3L_14259825_SNP [dm3] 3L_14266725_SNP [dm6]	G	T	2.666e^-4	0.981	INTERGENIC
3L	14450034	3L_14450034_SNP [dm3] 3L_14456934_SNP [dm6]	C	T	2.667e^-4	0.981	INTRON bbg	TF binding site mE1_TFBS_cad
3L	6152267	3L_6152267_SNP [dm3] 3L_6159167_SNP [dm6]	A	C	2.668e^-4	0.981	UPSTREAM Cpr65Ay INTERGENIC
2R	18998636	2R_18998636_SNP [dm3] 2R_23111113_SNP [dm6]	A	T	2.687e^-4	0.981	EXON CR44781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21813334	3L_21813334_SNP [dm3] 3L_21820234_SNP [dm6]	T	A	2.704e^-4	0.981	INTERGENIC
2R	10997755	2R_10997755_SNP [dm3] 2R_15110250_SNP [dm6]	T	C	2.705e^-4	0.981	INTERGENIC
2R	16702917	2R_16702917_SNP [dm3] 2R_20815412_SNP [dm6]	T	C	2.706e^-4	0.981	INTERGENIC
3R	1976211	3R_1976211_SNP [dm3] 3R_6150489_SNP [dm6]	A	G	2.711e^-4	0.981	UTR_3_PRIME CG31559
2L	6132514	2L_6132514_SNP [dm3] 2L_6132514_SNP [dm6]	T	C	2.729e^-4	0.981	DOWNSTREAM CR45719 & 1 other INTERGENIC
2R	12129656	2R_12129656_SNP [dm3] 2R_16242151_SNP [dm6]	T	C	2.735e^-4	0.981	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3L	11318976	3L_11318976_SNP [dm3] 3L_11325876_SNP [dm6]	G	A	2.737e^-4	0.981	UPSTREAM CR44723 INTERGENIC
3L	18391629	3L_18391629_SNP [dm3] 3L_18398529_SNP [dm6]	T	C	2.739e^-4	0.981	UPSTREAM rpr INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	18372433	3L_18372433_SNP [dm3] 3L_18379333_SNP [dm6]	T	G	2.741e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	1250879	3L_1250879_SNP [dm3] 3L_1250879_SNP [dm6]	G	A	2.742e^-4	0.981	START_LOST CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
X	14034223	X_14034223_SNP [dm3] X_14140190_SNP [dm6]	T	C	2.757e^-4	0.981	INTERGENIC
2R	5271029	2R_5271029_SNP [dm3] 2R_9383524_SNP [dm6]	A	T	2.759e^-4	0.981	INTRON CG13954
2R	15130648	2R_15130648_SNP [dm3] 2R_19243143_SNP [dm6]	G	T	2.763e^-4	0.981	SYNONYMOUS_CODING cora
X	13061744	X_13061744_SNP [dm3] X_13167711_SNP [dm6]	C	T	2.772e^-4	0.981	INTRON CG34411
3L	2362673	3L_2362673_SNP [dm3] 3L_2362673_SNP [dm6]	G	T	2.782e^-4	0.981	UTR_3_PRIME CG13801
3L	11049598	3L_11049598_SNP [dm3] 3L_11056498_SNP [dm6]	A	T	2.787e^-4	0.981	UPSTREAM CG7888 INTRON CG7888
2R	17418934	2R_17418934_SNP [dm3] 2R_21531429_SNP [dm6]	C	T	2.788e^-4	0.981	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
2R	16212342	2R_16212342_INS [dm3] 2R_20324837_INS [dm6]	C	CCCC	2.792e^-4	0.981	DOWNSTREAM CG8920 INTRON CG8920	TF binding site mE1_TFBS_cad
3L	5927331	3L_5927331_SNP [dm3] 3L_5934231_SNP [dm6]	C	T	2.799e^-4	0.981	SYNONYMOUS_CODING CG33993
2L	11930784	2L_11930784_SNP [dm3] 2L_11930784_SNP [dm6]	C	T	2.813e^-4	0.981	INTERGENIC
X	17042493	X_17042493_SNP [dm3] X_17148460_SNP [dm6]	A	G	2.821e^-4	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23230613	3R_23230613_SNP [dm3] 3R_27404891_SNP [dm6]	T	A	2.822e^-4	0.981	INTRON side
3R	9627900	3R_9627900_SNP [dm3] 3R_13802178_SNP [dm6]	C	T	2.828e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7908601	3L_7908601_SNP [dm3] 3L_7915501_SNP [dm6]	T	C	2.841e^-4	0.981	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	11126385	3L_11126385_SNP [dm3] 3L_11133285_SNP [dm6]	G	T	2.846e^-4	0.981	NON_SYNONYMOUS_CODING CG42575 UPSTREAM CG32074	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	17042719	X_17042719_SNP [dm3] X_17148686_SNP [dm6]	T	A	2.858e^-4	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10245091	3R_10245091_SNP [dm3] 3R_14419369_SNP [dm6]	C	T	2.859e^-4	0.981	INTRON cv-c & 1 other
3L	10045498	3L_10045498_SNP [dm3] 3L_10052398_SNP [dm6]	A	G	2.862e^-4	0.981	INTRON dpr6
X	10051078	X_10051078_SNP [dm3] X_10157045_SNP [dm6]	G	A	2.870e^-4	0.981	INTRON CR44894
3L	3438346	3L_3438346_SNP [dm3] 3L_3438346_SNP [dm6]	G	A	2.882e^-4	0.981	INTRON eIF5B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3557565	2L_3557565_SNP [dm3] 2L_3557565_SNP [dm6]	A	G	2.882e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4407518	2L_4407518_SNP [dm3] 2L_4407518_SNP [dm6]	C	T	2.884e^-4	0.981	SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	2.885e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	20238774	3R_20238774_SNP [dm3] 3R_24413052_SNP [dm6]	G	A	2.894e^-4	0.981	INTRON nAChRalpha1
3R	24541321	3R_24541321_SNP [dm3] 3R_28715599_SNP [dm6]	C	T	2.894e^-4	0.981	SPLICE_SITE_REGION htt SYNONYMOUS_CODING htt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	10048861	X_10048861_SNP [dm3] X_10154828_SNP [dm6]	C	T	2.900e^-4	0.981	UTR_3_PRIME CG12645 EXON CR44894
3R	17993941	3R_17993941_SNP [dm3] 3R_22168219_SNP [dm6]	A	G	2.931e^-4	0.981	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	12439482	2L_12439482_SNP [dm3] 2L_12439482_SNP [dm6]	T	G	2.931e^-4	0.981	INTRON Elf
X	12931173	X_12931173_SNP [dm3] X_13037140_SNP [dm6]	C	T	2.961e^-4	0.981	INTRON rad
X	12931176	X_12931176_SNP [dm3] X_13037143_SNP [dm6]	G	T	2.961e^-4	0.981	INTRON rad
X	12931187	X_12931187_DEL [dm3] X_13037154_DEL [dm6]	AA	G	2.961e^-4	0.981	INTRON rad
3L	12986174	3L_12986174_SNP [dm3] 3L_12993074_SNP [dm6]	A	T	2.970e^-4	0.981	INTERGENIC
2R	5270821	2R_5270821_DEL [dm3] 2R_9383316_DEL [dm6]	TT	T	2.990e^-4	0.981	INTRON CG13954
3L	12056644	3L_12056644_SNP [dm3] 3L_12063544_SNP [dm6]	T	C	2.996e^-4	0.981	INTRON rols	TF binding site mE1_TFBS_HSA
3R	19309314	3R_19309314_SNP [dm3] 3R_23483592_SNP [dm6]	C	T	3.009e^-4	0.981	UPSTREAM Ir94g DOWNSTREAM Ir94f INTERGENIC
2R	16584481	2R_16584481_SNP [dm3] 2R_20696976_SNP [dm6]	C	G	3.011e^-4	0.981	INTERGENIC
2L	19734446	2L_19734446_SNP [dm3] 2L_19734446_SNP [dm6]	T	A	3.031e^-4	0.981	INTRON CG10462	TF binding site mE1_TFBS_sens
2R	8589937	2R_8589937_SNP [dm3] 2R_12702432_SNP [dm6]	A	C	3.037e^-4	0.981	INTERGENIC
X	16501718	X_16501718_SNP [dm3] X_16607685_SNP [dm6]	G	A	3.047e^-4	0.981	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
X	16501719	X_16501719_SNP [dm3] X_16607686_SNP [dm6]	C	T	3.047e^-4	0.981	INTRON Nup153	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	3.047e^-4	0.981	INTRON CG42534
3R	7833388	3R_7833388_SNP [dm3] 3R_12007666_SNP [dm6]	T	C	3.053e^-4	0.981	UTR_3_PRIME KLHL18 DOWNSTREAM KLHL18
X	15808619	X_15808619_SNP [dm3] X_15914586_SNP [dm6]	G	A	3.057e^-4	0.981	INTRON CG8909
3L	11104958	3L_11104958_SNP [dm3] 3L_11111858_SNP [dm6]	G	A	3.060e^-4	0.981	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
X	573923	X_573923_SNP [dm3] X_679890_SNP [dm6]	A	C	3.061e^-4	0.981	INTERGENIC
2L	9039925	2L_9039925_SNP [dm3] 2L_9039925_SNP [dm6]	T	A	3.067e^-4	0.981	INTERGENIC
2R	5271051	2R_5271051_SNP [dm3] 2R_9383546_SNP [dm6]	C	T	3.096e^-4	0.981	INTRON CG13954
2R	13903194	2R_13903194_SNP [dm3] 2R_18015689_SNP [dm6]	T	C	3.104e^-4	0.981	INTERGENIC
3L	12732813	3L_12732813_SNP [dm3] 3L_12739713_SNP [dm6]	T	C	3.109e^-4	0.981	INTRON Ptp69D	TF binding site mE1_TFBS_sens
3R	17330992	3R_17330992_SNP [dm3] 3R_21505270_SNP [dm6]	G	A	3.116e^-4	0.981	INTRON C15	regulatory region REDfly_CRMs
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	3.136e^-4	0.981	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	3.150e^-4	0.981	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	3055141	3L_3055141_SNP [dm3] 3L_3055141_SNP [dm6]	A	G	3.164e^-4	0.981	UTR_5_PRIME CG16753 DOWNSTREAM CG1271 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1252835	3L_1252835_SNP [dm3] 3L_1252835_SNP [dm6]	G	T	3.169e^-4	0.981	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14484716	2L_14484716_SNP [dm3] 2L_14484716_SNP [dm6]	C	A	3.171e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5627832	3L_5627832_SNP [dm3] 3L_5634732_SNP [dm6]	G	T	3.174e^-4	0.981	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18665379	2R_18665379_SNP [dm3] 2R_22777874_SNP [dm6]	A	G	3.190e^-4	0.981	INTRON CG42260
2L	6389241	2L_6389241_SNP [dm3] 2L_6389241_SNP [dm6]	G	A	3.204e^-4	0.981	INTRON CG42368	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	2030149	3R_2030149_SNP [dm3] 3R_6204427_SNP [dm6]	G	T	3.206e^-4	0.981	UTR_5_PRIME Osi24
X	15999943	X_15999943_SNP [dm3] X_16105910_SNP [dm6]	G	A	3.210e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	23178852	3R_23178852_DEL [dm3] 3R_27353130_DEL [dm6]	CTT	C	3.219e^-4	0.981	INTRON CG42534
3R	18055795	3R_18055795_SNP [dm3] 3R_22230073_SNP [dm6]	T	A	3.221e^-4	0.981	INTRON SKIP
3L	11105574	3L_11105574_SNP [dm3] 3L_11112474_SNP [dm6]	A	C	3.221e^-4	0.981	SYNONYMOUS_CODING Sod DOWNSTREAM CG7638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15509151	3L_15509151_SNP [dm3] 3L_15516051_SNP [dm6]	A	C	3.221e^-4	0.981	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	16436182	X_16436182_SNP [dm3] X_16542149_SNP [dm6]	T	C	3.224e^-4	0.981	UTR_3_PRIME CG9902
3L	5628414	3L_5628414_SNP [dm3] 3L_5635314_SNP [dm6]	G	T	3.225e^-4	0.981	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	14484701	2L_14484701_SNP [dm3] 2L_14484701_SNP [dm6]	A	C	3.239e^-4	0.981	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11101391	3L_11101391_SNP [dm3] 3L_11108291_SNP [dm6]	C	T	3.241e^-4	0.981	NON_SYNONYMOUS_CODING CG12522 UPSTREAM CG32073 DOWNSTREAM CG34012
2R	4702325	2R_4702325_SNP [dm3] 2R_8814820_SNP [dm6]	G	A	3.245e^-4	0.981	INTRON sns
2L	5805181	2L_5805181_SNP [dm3] 2L_5805181_SNP [dm6]	G	T	3.248e^-4	0.981	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11776542	2R_11776542_SNP [dm3] 2R_15889037_SNP [dm6]	C	T	3.256e^-4	0.981	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	3.259e^-4	0.981	INTERGENIC
3L	11299625	3L_11299625_DEL [dm3] 3L_11306525_DEL [dm6]	AC	A	3.263e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23368078	3R_23368078_SNP [dm3] 3R_27542356_SNP [dm6]	A	G	3.272e^-4	0.981	UPSTREAM Gr98b INTERGENIC	TF binding site mE1_TFBS_sens
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	3.279e^-4	0.981	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	18978579	3R_18978579_SNP [dm3] 3R_23152857_SNP [dm6]	C	T	3.279e^-4	0.981	UTR_3_PRIME unk DOWNSTREAM unk
2L	14803045	2L_14803045_SNP [dm3] 2L_14803045_SNP [dm6]	G	A	3.285e^-4	0.981	NON_SYNONYMOUS_CODING CG33308
2L	2787416	2L_2787416_SNP [dm3] 2L_2787416_SNP [dm6]	A	G	3.290e^-4	0.981	INTRON Syt1
3R	14445151	3R_14445151_SNP [dm3] 3R_18619429_SNP [dm6]	T	C	3.295e^-4	0.981	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	3.295e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	9753790	2L_9753790_SNP [dm3] 2L_9753790_SNP [dm6]	G	A	3.299e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17130926	3L_17130926_SNP [dm3] 3L_17137826_SNP [dm6]	G	C	3.314e^-4	0.981	INTRON Rbp6
2R	17757441	2R_17757441_SNP [dm3] 2R_21869936_SNP [dm6]	A	G	3.327e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	455228	4_455228_DEL [dm3] 4_434602_DEL [dm6]	TTTTGTCAAATTTTCAATGC...	A	3.337e^-4	0.981	INTERGENIC	transposable element FlyBase
3L	4185523	3L_4185523_SNP [dm3] 3L_4185523_SNP [dm6]	T	C	3.339e^-4	0.981	UPSTREAM Teh3 DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
2R	16426867	2R_16426867_SNP [dm3] 2R_20539362_SNP [dm6]	G	A	3.363e^-4	0.981	UPSTREAM CG13427 DOWNSTREAM CG13428 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12502577	X_12502577_SNP [dm3] X_12608544_SNP [dm6]	A	G	3.363e^-4	0.981	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
2R	4139873	2R_4139873_SNP [dm3] 2R_8252368_SNP [dm6]	G	C	3.363e^-4	0.981	INTERGENIC
2R	17718565	2R_17718565_SNP [dm3] 2R_21831060_SNP [dm6]	G	T	3.368e^-4	0.981	INTRON CG13492
2L	7588105	2L_7588105_SNP [dm3] 2L_7588105_SNP [dm6]	A	G	3.368e^-4	0.981	INTERGENIC
3R	14907243	3R_14907243_SNP [dm3] 3R_19081521_SNP [dm6]	T	C	3.372e^-4	0.981	INTRON cdi
3L	12056149	3L_12056149_SNP [dm3] 3L_12063049_SNP [dm6]	T	A	3.377e^-4	0.981	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17579734	2R_17579734_SNP [dm3] 2R_21692229_SNP [dm6]	T	A	3.379e^-4	0.981	SPLICE_SITE_REGION Ppcdc & 1 other DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
X	577396	X_577396_SNP [dm3] X_683363_SNP [dm6]	A	T	3.382e^-4	0.981	INTERGENIC
3L	14058880	3L_14058880_SNP [dm3] 3L_14065780_SNP [dm6]	A	G	3.384e^-4	0.981	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
2R	1968982	2R_1968982_SNP [dm3] 2R_6081477_SNP [dm6]	A	G	3.385e^-4	0.981	UPSTREAM CG14590 INTRON Ars2
X	12678530	X_12678530_DEL [dm3] X_12784497_DEL [dm6]	AA	G	3.390e^-4	0.981	UTR_5_PRIME CG32647 INTRON CG32647
3L	13896718	3L_13896718_SNP [dm3] 3L_13903618_SNP [dm6]	T	A	3.408e^-4	0.981	UPSTREAM dysc INTERGENIC
X	16555270	X_16555270_SNP [dm3] X_16661237_SNP [dm6]	T	C	3.415e^-4	0.981	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	3.424e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11934333	2L_11934333_SNP [dm3] 2L_11934333_SNP [dm6]	A	T	3.441e^-4	0.981	UPSTREAM Or33a INTERGENIC
2L	5805721	2L_5805721_SNP [dm3] 2L_5805721_SNP [dm6]	C	T	3.443e^-4	0.981	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	17637905	2R_17637905_SNP [dm3] 2R_21750400_SNP [dm6]	T	C	3.461e^-4	0.981	INTERGENIC
2L	19734011	2L_19734011_SNP [dm3] 2L_19734011_SNP [dm6]	A	C	3.480e^-4	0.981	NON_SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4056448	3L_4056448_SNP [dm3] 3L_4056448_SNP [dm6]	C	T	3.483e^-4	0.981	INTRON CG1136	TF binding site mE1_TFBS_cad
2R	15993452	2R_15993452_MNP [dm3] 2R_20105947_MNP [dm6]	GAA	CCT	3.503e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	1665378	2L_1665378_SNP [dm3] 2L_1665378_SNP [dm6]	T	A	3.508e^-4	0.981	INTRON chinmo
3L	10045508	3L_10045508_SNP [dm3] 3L_10052408_SNP [dm6]	T	A	3.510e^-4	0.981	INTRON dpr6
2R	19475561	2R_19475561_SNP [dm3] 2R_23588038_SNP [dm6]	T	G	3.511e^-4	0.981	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	5863972	3R_5863972_SNP [dm3] 3R_10038250_SNP [dm6]	G	T	3.522e^-4	0.981	INTRON Mical
3L	14154477	3L_14154477_SNP [dm3] 3L_14161377_SNP [dm6]	A	G	3.527e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
3R	3080324	3R_3080324_SNP [dm3] 3R_7254602_SNP [dm6]	T	A	3.527e^-4	0.981	INTRON Gld
3L	1080550	3L_1080550_SNP [dm3] 3L_1080550_SNP [dm6]	G	A	3.530e^-4	0.981	INTRON bab1	TF binding site mE1_TFBS_chinmo
2R	20627462	2R_20627462_SNP [dm3] 2R_24739939_SNP [dm6]	C	T	3.531e^-4	0.981	UPSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	939844	2L_939844_SNP [dm3] 2L_939844_SNP [dm6]	G	A	3.534e^-4	0.981	INTRON CG4341	TF binding site mE1_TFBS_chinmo
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	3.534e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	6757314	3R_6757314_SNP [dm3] 3R_10931592_SNP [dm6]	C	T	3.538e^-4	0.981	INTERGENIC
2R	17355656	2R_17355656_SNP [dm3] 2R_21468151_SNP [dm6]	C	T	3.547e^-4	0.981	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	15363192	3L_15363192_SNP [dm3] 3L_15370092_SNP [dm6]	T	A	3.548e^-4	0.981	INTERGENIC
3L	16230659	3L_16230659_SNP [dm3] 3L_16237559_SNP [dm6]	C	A	3.551e^-4	0.981	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
X	12931123	X_12931123_SNP [dm3] X_13037090_SNP [dm6]	C	T	3.557e^-4	0.981	INTRON rad
2R	13717705	2R_13717705_INS [dm3] 2R_17830200_INS [dm6]	T	TTCTTCT	3.575e^-4	0.981	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
3L	12056205	3L_12056205_SNP [dm3] 3L_12063105_SNP [dm6]	T	A	3.582e^-4	0.981	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	17757400	2R_17757400_SNP [dm3] 2R_21869895_SNP [dm6]	G	C	3.582e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5472153	X_5472153_SNP [dm3] X_5578120_SNP [dm6]	C	A	3.585e^-4	0.981	INTERGENIC
3L	13292673	3L_13292673_SNP [dm3] 3L_13299573_SNP [dm6]	G	T	3.588e^-4	0.981	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
X	15999808	X_15999808_SNP [dm3] X_16105775_SNP [dm6]	C	T	3.590e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	7908940	3L_7908940_SNP [dm3] 3L_7915840_SNP [dm6]	C	T	3.597e^-4	0.981	UTR_3_PRIME CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	12931129	X_12931129_SNP [dm3] X_13037096_SNP [dm6]	T	C	3.611e^-4	0.981	INTRON rad
X	17538210	X_17538210_SNP [dm3] X_17644177_SNP [dm6]	C	T	3.622e^-4	0.981	SPLICE_SITE_REGION RhoGAPp190 SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2L	9939581	2L_9939581_SNP [dm3] 2L_9939581_SNP [dm6]	A	C	3.643e^-4	0.981	NON_SYNONYMOUS_CODING CG4619 UPSTREAM Apf DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16966647	2R_16966647_SNP [dm3] 2R_21079142_SNP [dm6]	T	G	3.648e^-4	0.981	INTRON Treh
3L	18400898	3L_18400898_SNP [dm3] 3L_18407798_SNP [dm6]	C	A	3.672e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
2L	1259299	2L_1259299_SNP [dm3] 2L_1259299_SNP [dm6]	G	T	3.675e^-4	0.981	INTRON robo3	TF binding site mE1_TFBS_Kr
3L	5866662	3L_5866662_SNP [dm3] 3L_5873562_SNP [dm6]	A	G	3.680e^-4	0.981	UTR_5_PRIME CG18586 DOWNSTREAM CG5568
2R	10479610	2R_10479610_SNP [dm3] 2R_14592105_SNP [dm6]	A	G	3.683e^-4	0.981	UPSTREAM CG12869 INTRON CG12869	TF binding site mE1_TFBS_hkb
3R	17154780	3R_17154780_SNP [dm3] 3R_21329058_SNP [dm6]	G	C	3.691e^-4	0.981	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
2L	9381853	2L_9381853_DEL [dm3] 2L_9381853_DEL [dm6]	TT	T	3.694e^-4	0.981	INTRON Shawl
2R	12809864	2R_12809864_SNP [dm3] 2R_16922359_SNP [dm6]	A	T	3.696e^-4	0.981	INTERGENIC
3L	3880076	3L_3880076_SNP [dm3] 3L_3880076_SNP [dm6]	A	G	3.702e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11073326	2L_11073326_SNP [dm3] 2L_11073326_SNP [dm6]	G	A	3.703e^-4	0.981	INTERGENIC
3R	18636455	3R_18636455_SNP [dm3] 3R_22810733_SNP [dm6]	A	T	3.717e^-4	0.981	INTERGENIC
X	5257980	X_5257980_SNP [dm3] X_5363947_SNP [dm6]	A	T	3.717e^-4	0.981	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18561373	2R_18561373_SNP [dm3] 2R_22673868_SNP [dm6]	G	C	3.723e^-4	0.981	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC
X	2689552	X_2689552_SNP [dm3] X_2795519_SNP [dm6]	A	G	3.727e^-4	0.981	INTRON kirre & 1 other	regulatory region REDfly_CRMs
2L	3145342	2L_3145342_SNP [dm3] 2L_3145342_SNP [dm6]	G	A	3.748e^-4	0.981	SYNONYMOUS_CODING CG12400 UPSTREAM toc DOWNSTREAM Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	8383114	3R_8383114_SNP [dm3] 3R_12557392_SNP [dm6]	C	G	3.751e^-4	0.981	INTRON Octbeta2R
X	1766568	X_1766568_SNP [dm3] X_1872535_SNP [dm6]	A	G	3.755e^-4	0.981	UTR_3_PRIME Pgam5 DOWNSTREAM CG14803	TF binding site mE1_TFBS_sens
4	437000	4_437000_SNP [dm3] 4_416374_SNP [dm6]	A	G	3.761e^-4	0.981	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	874913	3L_874913_SNP [dm3] 3L_874913_SNP [dm6]	G	A	3.763e^-4	0.981	INTRON CG32479	TF binding site mE1_TFBS_cad
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	3.765e^-4	0.981	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7908055	3L_7908055_SNP [dm3] 3L_7914955_SNP [dm6]	T	A	3.769e^-4	0.981	NON_SYNONYMOUS_CODING CG8111 UPSTREAM CG32368	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20238775	3R_20238775_SNP [dm3] 3R_24413053_SNP [dm6]	C	A	3.780e^-4	0.981	INTRON nAChRalpha1
2L	5805475	2L_5805475_SNP [dm3] 2L_5805475_SNP [dm6]	C	T	3.784e^-4	0.981	UTR_5_PRIME CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	13462061	2L_13462061_SNP [dm3] 2L_13462061_SNP [dm6]	T	A	3.793e^-4	0.981	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	12440055	2L_12440055_SNP [dm3] 2L_12440055_SNP [dm6]	A	C	3.794e^-4	0.981	UTR_3_PRIME Elf
2L	11068155	2L_11068155_SNP [dm3] 2L_11068155_SNP [dm6]	A	T	3.796e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16895734	2L_16895734_SNP [dm3] 2L_16895734_SNP [dm6]	A	T	3.800e^-4	0.981	SYNONYMOUS_CODING tweek
2R	13917740	2R_13917740_SNP [dm3] 2R_18030235_SNP [dm6]	T	C	3.800e^-4	0.981	INTERGENIC
3R	4263819	3R_4263819_SNP [dm3] 3R_8438097_SNP [dm6]	G	T	3.802e^-4	0.981	INTRON CG45263
X	15128305	X_15128305_SNP [dm3] X_15234272_SNP [dm6]	T	A	3.807e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26597445	3R_26597445_SNP [dm3] 3R_30771723_SNP [dm6]	A	G	3.808e^-4	0.981	INTRON zfh1
3L	5191651	3L_5191651_SNP [dm3] 3L_5198551_SNP [dm6]	G	A	3.819e^-4	0.981	INTRON shep
2L	3794226	2L_3794226_SNP [dm3] 2L_3794226_SNP [dm6]	C	T	3.822e^-4	0.981	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
2R	13080287	2R_13080287_SNP [dm3] 2R_17192782_SNP [dm6]	C	T	3.824e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10334533	3L_10334533_SNP [dm3] 3L_10341433_SNP [dm6]	T	A	3.826e^-4	0.981	INTERGENIC
2R	17284478	2R_17284478_SNP [dm3] 2R_21396973_SNP [dm6]	A	G	3.830e^-4	0.981	INTRON Sdc
X	17170992	X_17170992_DEL [dm3] X_17276959_DEL [dm6]	CTTTTAGCC	C	3.831e^-4	0.981	INTRON f
3L	15596878	3L_15596878_SNP [dm3] 3L_15603778_SNP [dm6]	T	C	3.832e^-4	0.981	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
X	20754398	X_20754398_SNP [dm3] X_20883371_SNP [dm6]	T	C	3.833e^-4	0.981	UPSTREAM I-3 INTRON shakB
2R	12616609	2R_12616609_SNP [dm3] 2R_16729104_SNP [dm6]	C	T	3.834e^-4	0.981	INTRON CG30463
3R	13583390	3R_13583390_SNP [dm3] 3R_17757668_SNP [dm6]	G	A	3.838e^-4	0.981	START_GAINED TyrR UTR_5_PRIME TyrR	TF binding site mE1_TFBS_chinmo
3R	22299979	3R_22299979_SNP [dm3] 3R_26474257_SNP [dm6]	C	A	3.846e^-4	0.981	SYNONYMOUS_CODING plum
2L	10237898	2L_10237898_SNP [dm3] 2L_10237898_SNP [dm6]	G	T	3.848e^-4	0.981	UTR_5_PRIME mthl15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10433184	3L_10433184_DEL [dm3] 3L_10440084_DEL [dm6]	TT	T	3.855e^-4	0.981	INTERGENIC
X	11704912	X_11704912_SNP [dm3] X_11810879_SNP [dm6]	T	C	3.860e^-4	0.981	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5472149	X_5472149_SNP [dm3] X_5578116_SNP [dm6]	A	T	3.864e^-4	0.981	INTERGENIC
2R	3428621	2R_3428621_SNP [dm3] 2R_7541116_SNP [dm6]	C	T	3.865e^-4	0.981	INTRON Corin
X	15324740	X_15324740_SNP [dm3] X_15430707_SNP [dm6]	C	G	3.867e^-4	0.981	INTRON Cngl
2L	3857131	2L_3857131_SNP [dm3] 2L_3857131_SNP [dm6]	A	T	3.872e^-4	0.981	EXON CR45450	TF binding site mE1_TFBS_sens
2L	2010731	2L_2010731_SNP [dm3] 2L_2010731_SNP [dm6]	A	G	3.877e^-4	0.981	UPSTREAM CG4238 & 1 other DOWNSTREAM tRNA:CR31940 INTRON CG4238	TF binding site BDTNP1_TFBS_dl
X	5290749	X_5290749_SNP [dm3] X_5396716_SNP [dm6]	A	C	3.880e^-4	0.981	UTR_3_PRIME SK INTRON SK
2L	3619600	2L_3619600_SNP [dm3] 2L_3619600_SNP [dm6]	C	A	3.909e^-4	0.981	SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	14201559	3R_14201559_DEL [dm3] 3R_18375837_DEL [dm6]	ATT	G	3.911e^-4	0.981	EXON CR44946
3L	11104517	3L_11104517_SNP [dm3] 3L_11111417_SNP [dm6]	T	C	3.912e^-4	0.981	SPLICE_SITE_REGION CG7638 DOWNSTREAM Sod INTRON CG7638	TF binding site mE1_TFBS_HSA
2L	9939580	2L_9939580_SNP [dm3] 2L_9939580_SNP [dm6]	A	C	3.919e^-4	0.981	NON_SYNONYMOUS_CODING CG4619 UPSTREAM Apf DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	20117718	2R_20117718_SNP [dm3] 2R_24230195_SNP [dm6]	A	G	3.922e^-4	0.981	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7256213	2R_7256213_SNP [dm3] 2R_11368708_SNP [dm6]	C	T	3.924e^-4	0.981	INTRON CG13204	TF binding site BDTNP1_TFBS_twi
X	11925550	X_11925550_SNP [dm3] X_12031517_SNP [dm6]	A	T	3.934e^-4	0.981	UPSTREAM Cyp311a1 INTERGENIC
3L	15871465	3L_15871465_SNP [dm3] 3L_15878365_SNP [dm6]	T	C	3.934e^-4	0.981	INTRON pHCl
2R	7226786	2R_7226786_SNP [dm3] 2R_11339281_SNP [dm6]	G	T	3.935e^-4	0.981	SYNONYMOUS_CODING zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	8688472	2L_8688472_SNP [dm3] 2L_8688472_SNP [dm6]	G	A	3.938e^-4	0.981	SYNONYMOUS_CODING Hnf4	TF binding site mE1_TFBS_chinmo
X	15999824	X_15999824_SNP [dm3] X_16105791_SNP [dm6]	C	T	3.939e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	7304656	2L_7304656_SNP [dm3] 2L_7304656_SNP [dm6]	G	A	3.944e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19734171	2L_19734171_SNP [dm3] 2L_19734171_SNP [dm6]	G	A	3.945e^-4	0.981	SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	192726	4_192726_SNP [dm3] 4_172100_SNP [dm6]	G	A	3.949e^-4	0.981	SYNONYMOUS_CODING CG33978 INTRON CG33978	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_zfh1
2L	3689129	2L_3689129_SNP [dm3] 2L_3689129_SNP [dm6]	C	T	3.955e^-4	0.981	INTRON CG34340
3L	11102211	3L_11102211_SNP [dm3] 3L_11109111_SNP [dm6]	A	T	3.970e^-4	0.981	UPSTREAM CG7638 DOWNSTREAM CG12522 INTRON CG34012
2R	9692780	2R_9692780_SNP [dm3] 2R_13805275_SNP [dm6]	T	A	3.971e^-4	0.981	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
3R	10412967	3R_10412967_SNP [dm3] 3R_14587245_SNP [dm6]	C	G	3.972e^-4	0.981	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14770089	3L_14770089_SNP [dm3] 3L_14776989_SNP [dm6]	T	C	3.979e^-4	0.981	UPSTREAM mop INTRON bmm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15871443	3L_15871443_SNP [dm3] 3L_15878343_SNP [dm6]	A	C	3.985e^-4	0.981	INTRON pHCl
2R	10872097	2R_10872097_SNP [dm3] 2R_14984592_SNP [dm6]	G	C	4.021e^-4	0.981	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
3L	898114	3L_898114_SNP [dm3] 3L_898114_SNP [dm6]	G	T	4.021e^-4	0.981	NON_SYNONYMOUS_CODING CG34057 DOWNSTREAM CG34056	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13982820	2L_13982820_SNP [dm3] 2L_13982820_SNP [dm6]	T	A	4.025e^-4	0.981	UTR_3_PRIME NimC2 & 1 other
3L	13407492	3L_13407492_SNP [dm3] 3L_13414392_SNP [dm6]	A	G	4.034e^-4	0.981	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
3R	13166489	3R_13166489_SNP [dm3] 3R_17340767_SNP [dm6]	C	T	4.038e^-4	0.981	INTRON beat-IIa
3L	11104980	3L_11104980_SNP [dm3] 3L_11111880_SNP [dm6]	C	A	4.042e^-4	0.981	UTR_3_PRIME CG7638 DOWNSTREAM Sod
3R	19195433	3R_19195433_SNP [dm3] 3R_23369711_SNP [dm6]	G	A	4.060e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	2551323	3R_2551323_SNP [dm3] 3R_6725601_SNP [dm6]	T	A	4.060e^-4	0.981	INTRON pb	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15649145	3R_15649145_SNP [dm3] 3R_19823423_SNP [dm6]	C	T	4.069e^-4	0.981	INTRON bnl
2L	13996948	2L_13996948_SNP [dm3] 2L_13996948_SNP [dm6]	T	C	4.070e^-4	0.981	INTRON rk
X	17042582	X_17042582_SNP [dm3] X_17148549_SNP [dm6]	C	G	4.077e^-4	0.981	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	14933310	2R_14933310_SNP [dm3] 2R_19045805_SNP [dm6]	A	C	4.083e^-4	0.981	INTERGENIC
2L	6777040	2L_6777040_SNP [dm3] 2L_6777040_SNP [dm6]	G	C	4.089e^-4	0.981	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17579057	2R_17579057_SNP [dm3] 2R_21691552_SNP [dm6]	A	T	4.093e^-4	0.981	UPSTREAM Ppcdc & 3 others INTRON CG42496 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17579073	2R_17579073_SNP [dm3] 2R_21691568_SNP [dm6]	A	G	4.093e^-4	0.981	UPSTREAM Ppcdc & 3 others INTRON CG42496 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20743593	3R_20743593_SNP [dm3] 3R_24917871_SNP [dm6]	G	A	4.099e^-4	0.981	UPSTREAM CG11168 & 2 others INTERGENIC	TF binding site mE1_TFBS_cad
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	4.103e^-4	0.981	INTERGENIC
2L	4408622	2L_4408622_SNP [dm3] 2L_4408622_SNP [dm6]	G	C	4.110e^-4	0.981	SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5805805	2L_5805805_SNP [dm3] 2L_5805805_SNP [dm6]	T	C	4.113e^-4	0.981	INTRON CG11034	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	4.115e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
4	509817	4_509817_SNP [dm3] 4_489191_SNP [dm6]	A	G	4.115e^-4	0.981	UPSTREAM Asator INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	5472112	X_5472112_SNP [dm3] X_5578079_SNP [dm6]	T	A	4.117e^-4	0.981	INTERGENIC
3R	13353976	3R_13353976_SNP [dm3] 3R_17528254_SNP [dm6]	C	T	4.121e^-4	0.981	INTERGENIC
2L	6393808	2L_6393808_SNP [dm3] 2L_6393808_SNP [dm6]	C	T	4.126e^-4	0.981	INTRON CG42368
3L	14926445	3L_14926445_SNP [dm3] 3L_14933345_SNP [dm6]	G	A	4.132e^-4	0.981	INTRON DCX-EMAP
2R	20746093	2R_20746093_SNP [dm3] 2R_24858570_SNP [dm6]	G	A	4.134e^-4	0.981	UPSTREAM CR44829 INTERGENIC	TF binding site mE1_TFBS_sens
2L	16863739	2L_16863739_SNP [dm3] 2L_16863739_SNP [dm6]	T	A	4.140e^-4	0.981	INTERGENIC
2R	6816221	2R_6816221_SNP [dm3] 2R_10928716_SNP [dm6]	A	C	4.160e^-4	0.981	INTERGENIC
2L	3557563	2L_3557563_SNP [dm3] 2L_3557563_SNP [dm6]	T	A	4.162e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	11068667	2L_11068667_SNP [dm3] 2L_11068667_SNP [dm6]	A	G	4.171e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	662626	2L_662626_SNP [dm3] 2L_662626_SNP [dm6]	A	C	4.176e^-4	0.981	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26494967	3R_26494967_SNP [dm3] 3R_30669245_SNP [dm6]	T	A	4.189e^-4	0.981	INTERGENIC
3L	9184154	3L_9184154_SNP [dm3] 3L_9191054_SNP [dm6]	T	C	4.190e^-4	0.981	INTERGENIC
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	4.191e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17701690	3L_17701690_SNP [dm3] 3L_17708590_SNP [dm6]	C	T	4.195e^-4	0.981	INTRON Ccn
3R	15657748	3R_15657748_SNP [dm3] 3R_19832026_SNP [dm6]	T	G	4.201e^-4	0.981	INTRON bnl
2R	17060282	2R_17060282_SNP [dm3] 2R_21172777_SNP [dm6]	G	C	4.203e^-4	0.981	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7564629	3L_7564629_SNP [dm3] 3L_7571529_SNP [dm6]	C	T	4.216e^-4	0.981	INTERGENIC
2L	1247445	2L_1247445_SNP [dm3] 2L_1247445_SNP [dm6]	T	C	4.219e^-4	0.981	INTERGENIC
2L	3746497	2L_3746497_SNP [dm3] 2L_3746497_SNP [dm6]	T	G	4.219e^-4	0.981	NON_SYNONYMOUS_CODING CG10019	TF binding site mE1_TFBS_chinmo
2R	8440835	2R_8440835_INS [dm3] 2R_12553330_INS [dm6]	A	AA	4.223e^-4	0.981	INTRON fra
3R	10628305	3R_10628305_SNP [dm3] 3R_14802583_SNP [dm6]	A	G	4.243e^-4	0.981	INTRON CG14857
3L	3449393	3L_3449393_SNP [dm3] 3L_3449393_SNP [dm6]	A	G	4.244e^-4	0.981	INTRON eIF5B
3L	3005688	3L_3005688_SNP [dm3] 3L_3005688_SNP [dm6]	T	A	4.247e^-4	0.981	INTRON FMRFaR
X	14920567	X_14920567_SNP [dm3] X_15026534_SNP [dm6]	A	T	4.248e^-4	0.981	INTRON hiw & 1 other	TF binding site BDTNP1_TFBS_twi
2R	10226034	2R_10226034_SNP [dm3] 2R_14338529_SNP [dm6]	T	A	4.253e^-4	0.981	INTRON Shroom
3R	25755764	3R_25755764_SNP [dm3] 3R_29930042_SNP [dm6]	A	G	4.277e^-4	0.981	SYNONYMOUS_CODING CG31202 DOWNSTREAM Cog7
3R	26095327	3R_26095327_SNP [dm3] 3R_30269605_SNP [dm6]	A	T	4.287e^-4	0.981	INTERGENIC
3L	19379987	3L_19379987_SNP [dm3] 3L_19386887_SNP [dm6]	A	T	4.312e^-4	0.981	UPSTREAM ms_3_76Ba INTRON CG32206
2L	14776072	2L_14776072_SNP [dm3] 2L_14776072_SNP [dm6]	G	A	4.315e^-4	0.981	INTERGENIC
3R	27782470	3R_27782470_DEL [dm3] 3R_31956748_DEL [dm6]	ACCAGCGTTCTACAGA...	A	4.318e^-4	0.981	INTRON heph	TF binding site mE1_TFBS_cad
X	21168855	X_21168855_SNP [dm3] X_21297828_SNP [dm6]	T	G	4.321e^-4	0.981	SYNONYMOUS_CODING CG1718 DOWNSTREAM mir-2535b
3L	14259823	3L_14259823_SNP [dm3] 3L_14266723_SNP [dm6]	G	A	4.331e^-4	0.981	INTERGENIC
2L	19733208	2L_19733208_SNP [dm3] 2L_19733208_SNP [dm6]	C	A	4.344e^-4	0.981	SYNONYMOUS_CODING CG10462
3L	17594352	3L_17594352_SNP [dm3] 3L_17601252_SNP [dm6]	T	G	4.358e^-4	0.981	INTRON Eip74EF
2R	15994465	2R_15994465_SNP [dm3] 2R_20106960_SNP [dm6]	A	T	4.360e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15994466	2R_15994466_SNP [dm3] 2R_20106961_SNP [dm6]	T	C	4.360e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	22118435	2L_22118435_SNP [dm3] 2L_22118435_SNP [dm6]	C	T	4.367e^-4	0.981	INTERGENIC	transposable element FlyBase
2R	17727216	2R_17727216_SNP [dm3] 2R_21839711_SNP [dm6]	C	A	4.371e^-4	0.981	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15808604	X_15808604_SNP [dm3] X_15914571_SNP [dm6]	T	C	4.375e^-4	0.981	INTRON CG8909
X	3822862	X_3822862_SNP [dm3] X_3928829_SNP [dm6]	G	T	4.375e^-4	0.981	INTRON CG42541
3L	9848521	3L_9848521_INS [dm3] 3L_9855421_INS [dm6]	T	TT	4.384e^-4	0.981	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	16115169	2R_16115169_SNP [dm3] 2R_20227664_SNP [dm6]	G	C	4.401e^-4	0.981	INTERGENIC
2R	8144552	2R_8144552_SNP [dm3] 2R_12257047_SNP [dm6]	C	A	4.405e^-4	0.981	UPSTREAM Vha36-2 INTERGENIC
2R	5269108	2R_5269108_SNP [dm3] 2R_9381603_SNP [dm6]	G	T	4.406e^-4	0.981	INTRON CG13954	TF binding site mE1_TFBS_inv
3R	13186861	3R_13186861_SNP [dm3] 3R_17361139_SNP [dm6]	C	A	4.407e^-4	0.981	INTRON beat-IIa
3L	18663789	3L_18663789_SNP [dm3] 3L_18670689_SNP [dm6]	A	G	4.418e^-4	0.981	NON_SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
X	3336078	X_3336078_SNP [dm3] X_3442045_SNP [dm6]	A	G	4.420e^-4	0.981	INTRON CR44999 & 1 other
3R	25980398	3R_25980398_SNP [dm3] 3R_30154676_SNP [dm6]	T	G	4.438e^-4	0.981	INTRON CG11498	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	10334531	3L_10334531_SNP [dm3] 3L_10341431_SNP [dm6]	C	A	4.442e^-4	0.981	INTERGENIC
2L	9599351	2L_9599351_SNP [dm3] 2L_9599351_SNP [dm6]	C	T	4.451e^-4	0.981	SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	13185874	3R_13185874_SNP [dm3] 3R_17360152_SNP [dm6]	A	G	4.457e^-4	0.981	INTRON beat-IIa
X	10959363	X_10959363_SNP [dm3] X_11065330_SNP [dm6]	A	T	4.482e^-4	0.981	UPSTREAM CR45614 INTERGENIC
3R	22727016	3R_22727016_SNP [dm3] 3R_26901294_SNP [dm6]	A	G	4.495e^-4	0.981	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
X	21152212	X_21152212_SNP [dm3] X_21281185_SNP [dm6]	C	T	4.514e^-4	0.981	UPSTREAM CG32521 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5737343	3L_5737343_DEL [dm3] 3L_5744243_DEL [dm6]	ATA	A	4.514e^-4	0.981	UTR_3_PRIME sif INTRON sif
X	517074	X_517074_DEL [dm3] X_623041_DEL [dm6]	AA	A	4.517e^-4	0.981	UTR_3_PRIME mod_r_ UPSTREAM CG13369
2L	20695113	2L_20695113_SNP [dm3] 2L_20695113_SNP [dm6]	C	A	4.522e^-4	0.981	INTRON Hr38	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17575013	2R_17575013_SNP [dm3] 2R_21687508_SNP [dm6]	T	C	4.525e^-4	0.981	UTR_5_PRIME Tbp DOWNSTREAM CG30285	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	18901519	2L_18901519_SNP [dm3] 2L_18901519_SNP [dm6]	T	C	4.525e^-4	0.981	INTERGENIC
3R	5407984	3R_5407984_SNP [dm3] 3R_9582262_SNP [dm6]	T	C	4.526e^-4	0.981	DOWNSTREAM CG33654 INTRON CG8301
X	8149714	X_8149714_SNP [dm3] X_8255681_SNP [dm6]	T	A	4.527e^-4	0.981	INTRON CG1632
3L	18657168	3L_18657168_SNP [dm3] 3L_18664068_SNP [dm6]	T	A	4.540e^-4	0.981	INTRON MYPT-75D
2R	17777106	2R_17777106_SNP [dm3] 2R_21889601_SNP [dm6]	G	T	4.545e^-4	0.981	INTRON Fili
3L	19491292	3L_19491292_SNP [dm3] 3L_19498192_SNP [dm6]	T	A	4.551e^-4	0.981	UPSTREAM CG9449 DOWNSTREAM CG9451 INTERGENIC
3R	12354579	3R_12354579_SNP [dm3] 3R_16528857_SNP [dm6]	A	T	4.558e^-4	0.981	INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23178817	3R_23178817_SNP [dm3] 3R_27353095_SNP [dm6]	G	A	4.559e^-4	0.981	INTRON CG42534
3L	10954852	3L_10954852_SNP [dm3] 3L_10961752_SNP [dm6]	G	A	4.559e^-4	0.981	EXON CR45249
3R	8580646	3R_8580646_SNP [dm3] 3R_12754924_SNP [dm6]	T	A	4.566e^-4	0.981	INTRON beat-Vc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1404031	3L_1404031_INS [dm3] 3L_1404031_INS [dm6]	A	ACA	4.571e^-4	0.981	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	15261587	3L_15261587_SNP [dm3] 3L_15268487_SNP [dm6]	A	T	4.575e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	17944370	3L_17944370_SNP [dm3] 3L_17951270_SNP [dm6]	C	T	4.583e^-4	0.981	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3L	1248392	3L_1248392_SNP [dm3] 3L_1248392_SNP [dm6]	C	A	4.583e^-4	0.981	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	4.590e^-4	0.981	INTERGENIC
3L	9849027	3L_9849027_SNP [dm3] 3L_9855927_SNP [dm6]	A	T	4.608e^-4	0.981	UPSTREAM RasGAP1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2R	17721197	2R_17721197_SNP [dm3] 2R_21833692_SNP [dm6]	C	T	4.624e^-4	0.981	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
X	6807122	X_6807122_SNP [dm3] X_6913089_SNP [dm6]	A	G	4.630e^-4	0.981	INTRON CG14431
3L	9010112	3L_9010112_SNP [dm3] 3L_9017012_SNP [dm6]	A	T	4.636e^-4	0.981	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	4.641e^-4	0.981	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	13350345	3L_13350345_SNP [dm3] 3L_13357245_SNP [dm6]	A	G	4.645e^-4	0.981	DOWNSTREAM Nplp2 INTERGENIC
2L	8691469	2L_8691469_SNP [dm3] 2L_8691469_SNP [dm6]	A	C	4.647e^-4	0.981	UPSTREAM Hnf4 INTRON Hnf4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16017363	X_16017363_SNP [dm3] X_16123330_SNP [dm6]	A	C	4.665e^-4	0.981	INTRON disco-r
X	10239683	X_10239683_DEL [dm3] X_10345650_DEL [dm6]	TGATT	T	4.667e^-4	0.981	INTRON CG43740	TF binding site BDTNP1_TFBS_dl
X	8709755	X_8709755_INS [dm3] X_8815722_INS [dm6]	C	CC	4.673e^-4	0.981	INTERGENIC
3R	15972159	3R_15972159_SNP [dm3] 3R_20146437_SNP [dm6]	G	C	4.677e^-4	0.981	INTERGENIC
2R	13901393	2R_13901393_SNP [dm3] 2R_18013888_SNP [dm6]	T	C	4.685e^-4	0.981	INTERGENIC
3L	11299651	3L_11299651_SNP [dm3] 3L_11306551_SNP [dm6]	T	G	4.695e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3147274	2L_3147274_SNP [dm3] 2L_3147274_SNP [dm6]	C	T	4.696e^-4	0.981	UTR_3_PRIME Mad
3R	9660058	3R_9660058_SNP [dm3] 3R_13834336_SNP [dm6]	T	A	4.698e^-4	0.981	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	25979757	3R_25979757_SNP [dm3] 3R_30154035_SNP [dm6]	A	G	4.703e^-4	0.981	DOWNSTREAM CG15529 INTRON CG11498	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9712787	3R_9712787_SNP [dm3] 3R_13887065_SNP [dm6]	T	A	4.709e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15261499	3L_15261499_SNP [dm3] 3L_15268399_SNP [dm6]	C	T	4.714e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	14132074	3R_14132074_SNP [dm3] 3R_18306352_SNP [dm6]	G	C	4.728e^-4	0.981	UTR_3_PRIME PKD INTRON PKD
2R	20202949	2R_20202949_SNP [dm3] 2R_24315426_SNP [dm6]	T	C	4.739e^-4	0.981	INTERGENIC
3L	14442150	3L_14442150_DEL [dm3] 3L_14449050_DEL [dm6]	TGT	T	4.742e^-4	0.981	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1457015	2L_1457015_SNP [dm3] 2L_1457015_SNP [dm6]	A	T	4.745e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7226735	2R_7226735_SNP [dm3] 2R_11339230_SNP [dm6]	A	C	4.751e^-4	0.981	UTR_3_PRIME zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18660342	3L_18660342_SNP [dm3] 3L_18667242_SNP [dm6]	T	G	4.751e^-4	0.981	UPSTREAM CG42495 DOWNSTREAM Capr & 1 other INTERGENIC
3R	14159734	3R_14159734_SNP [dm3] 3R_18334012_SNP [dm6]	T	C	4.752e^-4	0.981	UTR_3_PRIME CG15803
2L	7354334	2L_7354334_INS [dm3] 2L_7354334_INS [dm6]	AG	GCA	4.760e^-4	0.981	INTERGENIC
X	8622179	X_8622179_SNP [dm3] X_8728146_SNP [dm6]	G	C	4.762e^-4	0.981	INTERGENIC
X	569102	X_569102_SNP [dm3] X_675069_SNP [dm6]	G	C	4.764e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6776629	2L_6776629_SNP [dm3] 2L_6776629_SNP [dm6]	G	C	4.780e^-4	0.981	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8185133	2L_8185133_SNP [dm3] 2L_8185133_SNP [dm6]	C	G	4.780e^-4	0.981	NON_SYNONYMOUS_CODING Piezo INTRON Piezo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18858145	2R_18858145_SNP [dm3] 2R_22970622_SNP [dm6]	C	T	4.785e^-4	0.981	INTERGENIC
3R	26486720	3R_26486720_SNP [dm3] 3R_30660998_SNP [dm6]	C	A	4.790e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	26953938	3R_26953938_SNP [dm3] 3R_31128216_SNP [dm6]	G	A	4.791e^-4	0.981	SYNONYMOUS_CODING CG15556 DOWNSTREAM CG15554
2R	6814935	2R_6814935_SNP [dm3] 2R_10927430_SNP [dm6]	G	T	4.804e^-4	0.981	INTERGENIC
3L	16235791	3L_16235791_SNP [dm3] 3L_16242691_SNP [dm6]	G	T	4.808e^-4	0.981	INTERGENIC
2L	13845173	2L_13845173_SNP [dm3] 2L_13845173_SNP [dm6]	A	G	4.821e^-4	0.981	INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
2R	10658807	2R_10658807_SNP [dm3] 2R_14771302_SNP [dm6]	C	G	4.827e^-4	0.981	UTR_5_PRIME BEAF-32 UPSTREAM CG42254 INTRON BEAF-32	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	7857899	3L_7857899_SNP [dm3] 3L_7864799_SNP [dm6]	T	C	4.832e^-4	0.981	INTRON Pdp1
3R	22725840	3R_22725840_SNP [dm3] 3R_26900118_SNP [dm6]	A	T	4.841e^-4	0.981	INTRON T48	regulatory region REDfly_CRMs
3R	25270092	3R_25270092_SNP [dm3] 3R_29444370_SNP [dm6]	C	A	4.851e^-4	0.981	INTRON Ptp99A
3L	9693596	3L_9693596_SNP [dm3] 3L_9700496_SNP [dm6]	T	A	4.861e^-4	0.981	DOWNSTREAM CG6761 & 1 other INTERGENIC
2L	5805722	2L_5805722_SNP [dm3] 2L_5805722_SNP [dm6]	T	A	4.865e^-4	0.981	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2L	13055500	2L_13055500_SNP [dm3] 2L_13055500_SNP [dm6]	T	C	4.866e^-4	0.981	INTRON CG9932
2L	2066461	2L_2066461_SNP [dm3] 2L_2066461_SNP [dm6]	A	G	4.867e^-4	0.981	INTRON dpr3
2R	8630323	2R_8630323_SNP [dm3] 2R_12742818_SNP [dm6]	T	G	4.869e^-4	0.981	INTRON CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13931164	3R_13931164_SNP [dm3] 3R_18105442_SNP [dm6]	C	T	4.873e^-4	0.981	INTRON sr
2R	12614914	2R_12614914_SNP [dm3] 2R_16727409_SNP [dm6]	T	A	4.876e^-4	0.981	INTRON CG30463	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20742838	2R_20742838_SNP [dm3] 2R_24855315_SNP [dm6]	C	A	4.876e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
3L	15261332	3L_15261332_SNP [dm3] 3L_15268232_SNP [dm6]	G	C	4.879e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	4.885e^-4	0.981	INTRON Exn
2L	721579	2L_721579_SNP [dm3] 2L_721579_SNP [dm6]	C	G	4.892e^-4	0.981	INTERGENIC
X	10321733	X_10321733_DEL [dm3] X_10427700_DEL [dm6]	TTCTT	T	4.899e^-4	0.981	INTRON CG32683	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17454584	3L_17454584_SNP [dm3] 3L_17461484_SNP [dm6]	G	A	4.912e^-4	0.981	DOWNSTREAM CR44565 INTERGENIC
3R	7555135	3R_7555135_SNP [dm3] 3R_11729413_SNP [dm6]	C	G	4.923e^-4	0.981	NON_SYNONYMOUS_CODING CG12594	TF binding site mE1_TFBS_cad
2R	19439532	2R_19439532_SNP [dm3] 2R_23552009_SNP [dm6]	T	A	4.923e^-4	0.981	UPSTREAM pita INTRON pita & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	12090909	3L_12090909_SNP [dm3] 3L_12097809_SNP [dm6]	C	A	4.924e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16000057	X_16000057_SNP [dm3] X_16106024_SNP [dm6]	C	A	4.928e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13570882	3R_13570882_SNP [dm3] 3R_17745160_SNP [dm6]	C	T	4.930e^-4	0.981	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14336649	3L_14336649_DEL [dm3] 3L_14343549_DEL [dm6]	AAAT	A	4.979e^-4	0.981	INTRON fz
X	9084719	X_9084719_SNP [dm3] X_9190686_SNP [dm6]	C	A	4.981e^-4	0.981	UPSTREAM CG12115 & 1 other INTERGENIC
X	4066462	X_4066462_SNP [dm3] X_4172429_SNP [dm6]	C	T	4.987e^-4	0.981	INTRON Fas2
2R	20746517	2R_20746517_SNP [dm3] 2R_24858994_SNP [dm6]	T	C	4.993e^-4	0.981	UPSTREAM CR44829 INTERGENIC
2R	5270961	2R_5270961_SNP [dm3] 2R_9383456_SNP [dm6]	G	A	4.997e^-4	0.981	INTRON CG13954
2L	10500728	2L_10500728_SNP [dm3] 2L_10500728_SNP [dm6]	T	A	5.001e^-4	0.981	INTRON Myo31DF
X	10432400	X_10432400_SNP [dm3] X_10538367_SNP [dm6]	T	G	5.003e^-4	0.981	INTRON spri	TF binding site BDTNP1_TFBS_da
3R	18485025	3R_18485025_SNP [dm3] 3R_22659303_SNP [dm6]	T	C	5.009e^-4	0.981	INTRON CG45058
2R	18662288	2R_18662288_SNP [dm3] 2R_22774783_SNP [dm6]	G	T	5.010e^-4	0.981	INTRON CG42260
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	5.011e^-4	0.981	INTRON Cip4
X	570113	X_570113_SNP [dm3] X_676080_SNP [dm6]	A	G	5.016e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6266802	2L_6266802_SNP [dm3] 2L_6266802_SNP [dm6]	A	T	5.031e^-4	0.981	INTRON Ddr
2L	3689103	2L_3689103_SNP [dm3] 2L_3689103_SNP [dm6]	G	A	5.034e^-4	0.981	INTRON CG34340
3R	11996600	3R_11996600_SNP [dm3] 3R_16170878_SNP [dm6]	A	T	5.039e^-4	0.981	UTR_3_PRIME CG6006 DOWNSTREAM CG6006
X	15128327	X_15128327_SNP [dm3] X_15234294_SNP [dm6]	G	C	5.045e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16718342	3R_16718342_SNP [dm3] 3R_20892620_SNP [dm6]	G	T	5.049e^-4	0.981	DOWNSTREAM tRNA:CR31333 EXON CR44947
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	5.057e^-4	0.981	INTRON 5-HT1A
X	8969010	X_8969010_SNP [dm3] X_9074977_SNP [dm6]	A	T	5.062e^-4	0.981	INTRON CG44325
X	17989903	X_17989903_SNP [dm3] X_18095870_SNP [dm6]	A	G	5.065e^-4	0.981	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14973176	2L_14973176_SNP [dm3] 2L_14973176_SNP [dm6]	G	T	5.067e^-4	0.981	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15261559	3L_15261559_SNP [dm3] 3L_15268459_SNP [dm6]	T	G	5.074e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10446958	2L_10446958_SNP [dm3] 2L_10446958_SNP [dm6]	C	T	5.075e^-4	0.981	UPSTREAM loh INTRON loh
3R	25500950	3R_25500950_SNP [dm3] 3R_29675228_SNP [dm6]	T	C	5.079e^-4	0.981	SYNONYMOUS_CODING Bub3 UPSTREAM Cap-D2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	22118280	2L_22118280_SNP [dm3] 2L_22118280_SNP [dm6]	A	G	5.082e^-4	0.981	INTERGENIC	transposable element FlyBase
3R	18636393	3R_18636393_SNP [dm3] 3R_22810671_SNP [dm6]	T	C	5.088e^-4	0.981	INTERGENIC
3L	9499501	3L_9499501_SNP [dm3] 3L_9506401_SNP [dm6]	G	A	5.098e^-4	0.981	DOWNSTREAM CG3408 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12732809	3L_12732809_SNP [dm3] 3L_12739709_SNP [dm6]	T	C	5.100e^-4	0.981	INTRON Ptp69D	TF binding site mE1_TFBS_sens
3R	27586848	3R_27586848_SNP [dm3] 3R_31761126_SNP [dm6]	A	C	5.103e^-4	0.981	NON_SYNONYMOUS_CODING Smvt
3R	21044770	3R_21044770_SNP [dm3] 3R_25219048_SNP [dm6]	C	T	5.107e^-4	0.981	UPSTREAM CG31103 DOWNSTREAM CG31106 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7707479	3L_7707479_INS [dm3] 3L_7714379_INS [dm6]	A	AAATTA	5.110e^-4	0.981	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13669839	2L_13669839_SNP [dm3] 2L_13669839_SNP [dm6]	C	A	5.117e^-4	0.981	UTR_3_PRIME CG18507 INTRON CG18507
2L	8082115	2L_8082115_SNP [dm3] 2L_8082115_SNP [dm6]	T	G	5.123e^-4	0.981	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	22295648	3R_22295648_SNP [dm3] 3R_26469926_SNP [dm6]	A	T	5.130e^-4	0.981	UTR_3_PRIME CG5455 DOWNSTREAM plum
X	9465442	X_9465442_SNP [dm3] X_9571409_SNP [dm6]	C	A	5.136e^-4	0.981	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
3R	8852534	3R_8852534_INS [dm3] 3R_13026812_INS [dm6]	A	ACAA	5.139e^-4	0.981	UTR_3_PRIME CG12360 DOWNSTREAM CG12360 & 1 other
3L	11136785	3L_11136785_SNP [dm3] 3L_11143685_SNP [dm6]	G	C	5.149e^-4	0.981	INTRON CG32082
2R	5270483	2R_5270483_SNP [dm3] 2R_9382978_SNP [dm6]	C	T	5.149e^-4	0.981	INTRON CG13954
2R	19134251	2R_19134251_SNP [dm3] 2R_23246728_SNP [dm6]	C	T	5.152e^-4	0.981	UTR_3_PRIME RpL22-like	TF binding site mE1_TFBS_cad
X	12502575	X_12502575_SNP [dm3] X_12608542_SNP [dm6]	A	T	5.162e^-4	0.981	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
3R	15653665	3R_15653665_SNP [dm3] 3R_19827943_SNP [dm6]	T	C	5.164e^-4	0.981	SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8276671	2L_8276671_SNP [dm3] 2L_8276671_SNP [dm6]	T	A	5.175e^-4	0.981	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	20764995	2R_20764995_SNP [dm3] 2R_24877472_SNP [dm6]	A	T	5.193e^-4	0.981	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12901833	2L_12901833_SNP [dm3] 2L_12901833_SNP [dm6]	T	C	5.196e^-4	0.981	INTERGENIC
3L	18375830	3L_18375830_SNP [dm3] 3L_18382730_SNP [dm6]	T	A	5.204e^-4	0.981	INTERGENIC
2L	7354342	2L_7354342_SNP [dm3] 2L_7354342_SNP [dm6]	G	A	5.208e^-4	0.981	INTERGENIC
3R	13570030	3R_13570030_SNP [dm3] 3R_17744308_SNP [dm6]	A	C	5.213e^-4	0.981	SPLICE_SITE_REGION TyrRII INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	9840066	2L_9840066_SNP [dm3] 2L_9840066_SNP [dm6]	C	T	5.217e^-4	0.981	INTRON nAChRalpha6
2L	13055462	2L_13055462_SNP [dm3] 2L_13055462_SNP [dm6]	T	C	5.224e^-4	0.981	INTRON CG9932
3L	5627780	3L_5627780_SNP [dm3] 3L_5634680_SNP [dm6]	A	T	5.227e^-4	0.981	INTRON Blimp-1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18665524	2R_18665524_SNP [dm3] 2R_22778019_SNP [dm6]	C	T	5.230e^-4	0.981	INTRON CG42260
2R	5269057	2R_5269057_SNP [dm3] 2R_9381552_SNP [dm6]	T	C	5.232e^-4	0.981	INTRON CG13954	TF binding site mE1_TFBS_inv
3R	25757766	3R_25757766_SNP [dm3] 3R_29932044_SNP [dm6]	G	T	5.239e^-4	0.981	SYNONYMOUS_CODING Cog7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25757970	3R_25757970_SNP [dm3] 3R_29932248_SNP [dm6]	C	T	5.239e^-4	0.981	SYNONYMOUS_CODING Cog7	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23178857	3R_23178857_DEL [dm3] 3R_27353135_DEL [dm6]	TCCAC	T	5.242e^-4	0.981	INTRON CG42534
X	4855840	X_4855840_SNP [dm3] X_4961807_SNP [dm6]	C	T	5.246e^-4	0.981	UPSTREAM SIP3 INTRON CR44833
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	5.249e^-4	0.981	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12888102	3L_12888102_INS [dm3] 3L_12895002_INS [dm6]	G	GTCG	5.253e^-4	0.981	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19843629	2L_19843629_SNP [dm3] 2L_19843629_SNP [dm6]	T	G	5.257e^-4	0.981	INTRON sick
3R	17994015	3R_17994015_INS [dm3] 3R_22168293_INS [dm6]	G	GGG	5.261e^-4	0.981	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	11282173	2R_11282173_SNP [dm3] 2R_15394668_SNP [dm6]	T	C	5.269e^-4	0.981	INTERGENIC
2R	18665521	2R_18665521_DEL [dm3] 2R_22778016_DEL [dm6]	TA	G	5.275e^-4	0.981	INTRON CG42260
2R	7140546	2R_7140546_SNP [dm3] 2R_11253041_SNP [dm6]	G	A	5.279e^-4	0.981	INTRON Cpr47Ea
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	5.280e^-4	0.981	UPSTREAM CG2113 INTERGENIC
3R	25599375	3R_25599375_SNP [dm3] 3R_29773653_SNP [dm6]	G	T	5.284e^-4	0.981	NON_SYNONYMOUS_CODING kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18194777	2R_18194777_SNP [dm3] 2R_22307272_SNP [dm6]	C	G	5.297e^-4	0.981	INTRON wdp
3R	24895890	3R_24895890_SNP [dm3] 3R_29070168_SNP [dm6]	T	C	5.300e^-4	0.981	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8510774	2R_8510774_SNP [dm3] 2R_12623269_SNP [dm6]	T	G	5.304e^-4	0.981	UPSTREAM CG30054 DOWNSTREAM Galphaq INTERGENIC
3R	15652263	3R_15652263_SNP [dm3] 3R_19826541_SNP [dm6]	A	T	5.306e^-4	0.981	INTRON bnl
3L	12864561	3L_12864561_SNP [dm3] 3L_12871461_SNP [dm6]	G	A	5.310e^-4	0.981	INTERGENIC
X	3822790	X_3822790_SNP [dm3] X_3928757_SNP [dm6]	C	T	5.317e^-4	0.981	INTRON CG42541
2L	1260330	2L_1260330_SNP [dm3] 2L_1260330_SNP [dm6]	C	G	5.320e^-4	0.981	INTRON robo3
2L	20596136	2L_20596136_SNP [dm3] 2L_20596136_SNP [dm6]	A	T	5.325e^-4	0.981	INTRON CR44909
3L	12056528	3L_12056528_SNP [dm3] 3L_12063428_SNP [dm6]	T	C	5.326e^-4	0.981	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
4	455251	4_455251_SNP [dm3] 4_434625_SNP [dm6]	A	G	5.326e^-4	0.981	INTERGENIC	transposable element FlyBase
X	17158519	X_17158519_SNP [dm3] X_17264486_SNP [dm6]	T	A	5.344e^-4	0.981	UPSTREAM f INTRON f
X	17040852	X_17040852_SNP [dm3] X_17146819_SNP [dm6]	G	T	5.346e^-4	0.981	SYNONYMOUS_CODING RpS5a UPSTREAM snoRNA:Psi28S-1135e & 5 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	23731446	3R_23731446_SNP [dm3] 3R_27905724_SNP [dm6]	A	C	5.351e^-4	0.981	START_GAINED CG34353 UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	18337595	3R_18337595_SNP [dm3] 3R_22511873_SNP [dm6]	G	A	5.358e^-4	0.981	INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	5627746	3L_5627746_SNP [dm3] 3L_5634646_SNP [dm6]	A	T	5.366e^-4	0.981	INTRON Blimp-1	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5627847	3L_5627847_SNP [dm3] 3L_5634747_SNP [dm6]	A	G	5.366e^-4	0.981	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5628284	3L_5628284_SNP [dm3] 3L_5635184_SNP [dm6]	A	T	5.366e^-4	0.981	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_Trl
2L	9679398	2L_9679398_SNP [dm3] 2L_9679398_SNP [dm6]	A	G	5.366e^-4	0.981	INTERGENIC
2L	5593241	2L_5593241_SNP [dm3] 2L_5593241_SNP [dm6]	C	T	5.379e^-4	0.981	INTERGENIC
X	19170440	X_19170440_SNP [dm3] X_19276407_SNP [dm6]	G	T	5.379e^-4	0.981	UTR_5_PRIME CG32537 DOWNSTREAM CG8028 INTRON CG32536
3L	11103180	3L_11103180_SNP [dm3] 3L_11110080_SNP [dm6]	C	T	5.381e^-4	0.981	SYNONYMOUS_CODING CG7638 UPSTREAM CG34012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	11104776	3L_11104776_SNP [dm3] 3L_11111676_SNP [dm6]	C	T	5.381e^-4	0.981	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3L	14598163	3L_14598163_SNP [dm3] 3L_14605063_SNP [dm6]	T	C	5.383e^-4	0.981	INTERGENIC
3L	10893725	3L_10893725_DEL [dm3] 3L_10900625_DEL [dm6]	GCAATGG	G	5.396e^-4	0.981	INTERGENIC
2R	15996755	2R_15996755_SNP [dm3] 2R_20109250_SNP [dm6]	T	C	5.397e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18898740	3L_18898740_SNP [dm3] 3L_18905640_SNP [dm6]	G	A	5.401e^-4	0.981	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2L	2011586	2L_2011586_SNP [dm3] 2L_2011586_SNP [dm6]	G	T	5.420e^-4	0.981	UPSTREAM CG4238 & 2 others INTRON CG4238
2R	18665536	2R_18665536_SNP [dm3] 2R_22778031_SNP [dm6]	T	C	5.424e^-4	0.981	INTRON CG42260
2R	18665538	2R_18665538_SNP [dm3] 2R_22778033_SNP [dm6]	T	A	5.424e^-4	0.981	INTRON CG42260
3R	3171928	3R_3171928_SNP [dm3] 3R_7346206_SNP [dm6]	C	T	5.440e^-4	0.981	SYNONYMOUS_CODING CG31496 UPSTREAM nxf4	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6548735	3L_6548735_SNP [dm3] 3L_6555635_SNP [dm6]	A	G	5.441e^-4	0.981	INTRON CG18769	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	12439780	2L_12439780_SNP [dm3] 2L_12439780_SNP [dm6]	G	C	5.451e^-4	0.981	UTR_3_PRIME Elf
4	924074	4_924074_SNP [dm3] 4_903448_SNP [dm6]	G	A	5.454e^-4	0.981	UTR_5_PRIME unc-13
2L	3689173	2L_3689173_SNP [dm3] 2L_3689173_SNP [dm6]	A	C	5.454e^-4	0.981	INTRON CG34340
X	17990065	X_17990065_SNP [dm3] X_18096032_SNP [dm6]	G	A	5.457e^-4	0.981	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	5.462e^-4	0.981	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15508880	3L_15508880_DEL [dm3] 3L_15515780_DEL [dm6]	GCCTAATCTTTAG...	G	5.472e^-4	0.981	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17327164	2R_17327164_SNP [dm3] 2R_21439659_SNP [dm6]	G	C	5.475e^-4	0.981	INTRON Sdc
3L	10045542	3L_10045542_SNP [dm3] 3L_10052442_SNP [dm6]	T	A	5.496e^-4	0.981	INTRON dpr6
3L	14574253	3L_14574253_SNP [dm3] 3L_14581153_SNP [dm6]	A	C	5.496e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	16439506	3L_16439506_SNP [dm3] 3L_16446406_SNP [dm6]	G	C	5.512e^-4	0.981	INTRON CG33158 & 1 other
X	1777384	X_1777384_SNP [dm3] X_1883351_SNP [dm6]	A	G	5.518e^-4	0.981	INTRON trr	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16904574	2R_16904574_SNP [dm3] 2R_21017069_SNP [dm6]	T	C	5.526e^-4	0.981	SYNONYMOUS_CODING CG3295 UPSTREAM RIC-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19676414	2R_19676414_SNP [dm3] 2R_23788891_SNP [dm6]	G	T	5.528e^-4	0.981	INTRON CG9850	TF binding site mE1_TFBS_HSA
2L	4461367	2L_4461367_SNP [dm3] 2L_4461367_SNP [dm6]	T	A	5.528e^-4	0.981	SYNONYMOUS_CODING CG15435 DOWNSTREAM CG15443
2R	20742083	2R_20742083_SNP [dm3] 2R_24854560_SNP [dm6]	A	G	5.532e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12131839	2R_12131839_SNP [dm3] 2R_16244334_SNP [dm6]	A	G	5.535e^-4	0.981	INTRON CngA	TF binding site mE1_TFBS_inv
X	17990435	X_17990435_SNP [dm3] X_18096402_SNP [dm6]	T	C	5.544e^-4	0.981	SYNONYMOUS_CODING RhoGAP16F
3R	6652250	3R_6652250_INS [dm3] 3R_10826528_INS [dm6]	A	AA	5.546e^-4	0.981	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13531246	3L_13531246_SNP [dm3] 3L_13538146_SNP [dm6]	C	T	5.552e^-4	0.981	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17035446	2L_17035446_SNP [dm3] 2L_17035446_SNP [dm6]	C	T	5.556e^-4	0.981	INTERGENIC
4	533375	4_533375_SNP [dm3] 4_512749_SNP [dm6]	A	T	5.568e^-4	0.981	INTRON zfh2
2L	11930779	2L_11930779_INS [dm3] 2L_11930779_INS [dm6]	A	AAAATGA	5.577e^-4	0.981	INTERGENIC
2R	17729131	2R_17729131_SNP [dm3] 2R_21841626_SNP [dm6]	A	C	5.586e^-4	0.981	INTERGENIC
X	20615288	X_20615288_SNP [dm3] X_20744261_SNP [dm6]	T	C	5.589e^-4	0.981	DOWNSTREAM CG15452 INTERGENIC
4	135573	4_135573_DEL [dm3] 4_114947_DEL [dm6]	AACTTA	C	5.591e^-4	0.981	DOWNSTREAM Ank & 1 other INTERGENIC	transposable element FlyBase
3L	10334563	3L_10334563_SNP [dm3] 3L_10341463_SNP [dm6]	T	A	5.595e^-4	0.981	INTERGENIC
3L	13245568	3L_13245568_SNP [dm3] 3L_13252468_SNP [dm6]	A	G	5.597e^-4	0.981	INTRON caps
2R	17960801	2R_17960801_SNP [dm3] 2R_22073296_SNP [dm6]	C	G	5.600e^-4	0.981	NON_SYNONYMOUS_CODING CG11474 DOWNSTREAM CG2921
X	11279020	X_11279020_INS [dm3] X_11384987_INS [dm6]	T	TGTGTGT	5.616e^-4	0.981	INTRON dlg1
3L	3499304	3L_3499304_SNP [dm3] 3L_3499304_SNP [dm6]	C	T	5.621e^-4	0.981	INTRON CG42324
2L	21330390	2L_21330390_SNP [dm3] 2L_21330390_SNP [dm6]	C	G	5.624e^-4	0.981	INTERGENIC	transposable element FlyBase
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	5.627e^-4	0.981	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	9544992	3L_9544992_SNP [dm3] 3L_9551892_SNP [dm6]	A	C	5.628e^-4	0.981	INTRON CG42673
2L	15872206	2L_15872206_SNP [dm3] 2L_15872206_SNP [dm6]	G	A	5.629e^-4	0.981	INTERGENIC
3R	16907491	3R_16907491_SNP [dm3] 3R_21081769_SNP [dm6]	T	C	5.637e^-4	0.981	UPSTREAM HHEX INTERGENIC
2R	10277824	2R_10277824_SNP [dm3] 2R_14390319_SNP [dm6]	C	T	5.639e^-4	0.981	UPSTREAM CG10104 INTERGENIC
2R	8144524	2R_8144524_DEL [dm3] 2R_12257019_DEL [dm6]	TG	C	5.640e^-4	0.981	UPSTREAM Vha36-2 INTERGENIC
2R	17175016	2R_17175016_SNP [dm3] 2R_21287511_SNP [dm6]	C	A	5.642e^-4	0.981	SYNONYMOUS_CODING CG10505	TF binding site mE1_TFBS_chinmo
2R	18665698	2R_18665698_SNP [dm3] 2R_22778193_SNP [dm6]	G	A	5.644e^-4	0.981	INTRON CG42260
2L	3695826	2L_3695826_SNP [dm3] 2L_3695826_SNP [dm6]	C	T	5.645e^-4	0.981	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2R	15322778	2R_15322778_SNP [dm3] 2R_19435273_SNP [dm6]	T	G	5.653e^-4	0.981	INTRON Fak
3L	18671347	3L_18671347_SNP [dm3] 3L_18678247_SNP [dm6]	A	G	5.663e^-4	0.981	DOWNSTREAM GNBP1 INTERGENIC
2L	2011794	2L_2011794_SNP [dm3] 2L_2011794_SNP [dm6]	A	G	5.665e^-4	0.981	UPSTREAM tRNA:CR31940 INTRON CG4238
3R	6845698	3R_6845698_SNP [dm3] 3R_11019976_SNP [dm6]	C	G	5.667e^-4	0.981	INTRON CG34114
2L	13602028	2L_13602028_SNP [dm3] 2L_13602028_SNP [dm6]	A	C	5.668e^-4	0.981	INTRON kuz
2L	10219786	2L_10219786_SNP [dm3] 2L_10219786_SNP [dm6]	A	T	5.679e^-4	0.981	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
3L	10334569	3L_10334569_SNP [dm3] 3L_10341469_SNP [dm6]	C	T	5.680e^-4	0.981	INTERGENIC
2L	15633277	2L_15633277_SNP [dm3] 2L_15633277_SNP [dm6]	T	C	5.681e^-4	0.981	UTR_3_PRIME CG18480 DOWNSTREAM CG18480
3L	18671330	3L_18671330_SNP [dm3] 3L_18678230_SNP [dm6]	A	C	5.686e^-4	0.981	DOWNSTREAM GNBP1 INTERGENIC
3R	20708147	3R_20708147_SNP [dm3] 3R_24882425_SNP [dm6]	T	C	5.700e^-4	0.981	DOWNSTREAM CG11089 INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15509158	3L_15509158_SNP [dm3] 3L_15516058_SNP [dm6]	G	T	5.706e^-4	0.981	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
4	455803	4_455803_SNP [dm3] 4_435177_SNP [dm6]	T	A	5.708e^-4	0.981	INTERGENIC	transposable element FlyBase
3L	1390781	3L_1390781_SNP [dm3] 3L_1390781_SNP [dm6]	G	A	5.710e^-4	0.981	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16717317	3R_16717317_SNP [dm3] 3R_20891595_SNP [dm6]	A	G	5.712e^-4	0.981	UPSTREAM tRNA:CR31333 DOWNSTREAM tRNA:CR31480 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22149066	3R_22149066_SNP [dm3] 3R_26323344_SNP [dm6]	T	C	5.715e^-4	0.981	INTRON CG33970
2R	17368244	2R_17368244_DEL [dm3] 2R_21480739_DEL [dm6]	CTGTATTT	A	5.718e^-4	0.981	INTRON Sdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	17654327	X_17654327_SNP [dm3] X_17760294_SNP [dm6]	G	T	5.719e^-4	0.981	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3L	7909310	3L_7909310_SNP [dm3] 3L_7916210_SNP [dm6]	A	G	5.730e^-4	0.981	DOWNSTREAM syd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12470885	3R_12470885_SNP [dm3] 3R_16645163_SNP [dm6]	A	G	5.754e^-4	0.981	UTR_3_PRIME CG10326 & 1 other
2L	11075300	2L_11075300_SNP [dm3] 2L_11075300_SNP [dm6]	G	C	5.755e^-4	0.981	UPSTREAM CG43725 & 1 other DOWNSTREAM AstC INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	6091909	3L_6091909_SNP [dm3] 3L_6098809_SNP [dm6]	G	T	5.763e^-4	0.981	INTRON Ets65A
X	9284784	X_9284784_SNP [dm3] X_9390751_SNP [dm6]	A	G	5.765e^-4	0.981	INTRON mgl
2L	942447	2L_942447_SNP [dm3] 2L_942447_SNP [dm6]	G	T	5.765e^-4	0.981	INTRON CG4341
2L	6749304	2L_6749304_SNP [dm3] 2L_6749304_SNP [dm6]	G	C	5.784e^-4	0.981	INTRON CG11221
3R	2441033	3R_2441033_SNP [dm3] 3R_6615311_SNP [dm6]	G	A	5.784e^-4	0.981	INTERGENIC
2R	18980870	2R_18980870_SNP [dm3] 2R_23093347_SNP [dm6]	A	G	5.785e^-4	0.981	INTRON CG9876
3L	18663118	3L_18663118_SNP [dm3] 3L_18670018_SNP [dm6]	T	C	5.792e^-4	0.981	SYNONYMOUS_CODING Capr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	8667527	3L_8667527_SNP [dm3] 3L_8674427_SNP [dm6]	T	C	5.799e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	3499342	3L_3499342_SNP [dm3] 3L_3499342_SNP [dm6]	G	T	5.801e^-4	0.981	INTRON CG42324
3R	25330477	3R_25330477_SNP [dm3] 3R_29504755_SNP [dm6]	A	G	5.804e^-4	0.981	UPSTREAM Trc8 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2256113	2L_2256113_SNP [dm3] 2L_2256113_SNP [dm6]	A	G	5.806e^-4	0.981	INTERGENIC
3R	9868219	3R_9868219_SNP [dm3] 3R_14042497_SNP [dm6]	G	A	5.811e^-4	0.981	INTERGENIC
3R	9868233	3R_9868233_DEL [dm3] 3R_14042511_DEL [dm6]	TGTAGGCATATAT...	T	5.811e^-4	0.981	INTERGENIC
3R	25779797	3R_25779797_SNP [dm3] 3R_29954075_SNP [dm6]	C	T	5.821e^-4	0.981	SYNONYMOUS_CODING TkR99D
2R	18665528	2R_18665528_DEL [dm3] 2R_22778023_DEL [dm6]	TGAATCC	T	5.821e^-4	0.981	INTRON CG42260
2R	18665556	2R_18665556_DEL [dm3] 2R_22778051_DEL [dm6]	AGTGTCGACCGAC...	A	5.821e^-4	0.981	INTRON CG42260
2L	1966580	2L_1966580_SNP [dm3] 2L_1966580_SNP [dm6]	C	T	5.834e^-4	0.981	INTRON erm
2L	9028330	2L_9028330_SNP [dm3] 2L_9028330_SNP [dm6]	C	T	5.837e^-4	0.981	INTRON CG9582 & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.023e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01855

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.9071	0.0522

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1706 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	1.604e^-7	0.301	NON_SYNONYMOUS_CODING sti
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	2.334e^-6	0.974	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	3.277e^-6	0.974	INTRON CngA	TF binding site mE1_TFBS_inv
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	4.104e^-6	0.974	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
X	14583755	X_14583755_SNP [dm3] X_14689722_SNP [dm6]	A	T	5.047e^-6	0.974	UTR_3_PRIME NetB
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	6.685e^-6	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	8.230e^-6	0.974	INTRON CngA	TF binding site mE1_TFBS_inv
3L	5191651	3L_5191651_SNP [dm3] 3L_5198551_SNP [dm6]	G	A	8.413e^-6	0.974	INTRON shep
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	8.776e^-6	0.974	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	18998636	2R_18998636_SNP [dm3] 2R_23111113_SNP [dm6]	A	T	9.013e^-6	0.974	EXON CR44781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11384876	2R_11384876_SNP [dm3] 2R_15497371_SNP [dm6]	A	G	1.091e^-5	0.974	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8622179	X_8622179_SNP [dm3] X_8728146_SNP [dm6]	G	C	1.275e^-5	0.974	INTERGENIC
X	15808618	X_15808618_SNP [dm3] X_15914585_SNP [dm6]	A	T	1.428e^-5	0.974	INTRON CG8909
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	1.437e^-5	0.974	INTRON Cip4
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	1.449e^-5	0.974	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4420274	3R_4420274_SNP [dm3] 3R_8594552_SNP [dm6]	T	A	1.479e^-5	0.974	INTRON 5-HT2B
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	1.730e^-5	0.974	UTR_3_PRIME Elf
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	1.816e^-5	0.974	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	14282208	2R_14282208_SNP [dm3] 2R_18394703_SNP [dm6]	T	A	1.833e^-5	0.974	NON_SYNONYMOUS_CODING Idgf5
2R	14282222	2R_14282222_SNP [dm3] 2R_18394717_SNP [dm6]	C	T	1.833e^-5	0.974	SYNONYMOUS_CODING Idgf5
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	1.872e^-5	0.974	INTRON Tgi
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	1.946e^-5	0.974	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
X	12932154	X_12932154_SNP [dm3] X_13038121_SNP [dm6]	G	A	2.004e^-5	0.974	INTRON rad
2L	2287082	2L_2287082_SNP [dm3] 2L_2287082_SNP [dm6]	A	T	2.084e^-5	0.974	UTR_3_PRIME CG42658 UPSTREAM CG31681
3R	23546613	3R_23546613_SNP [dm3] 3R_27720891_SNP [dm6]	A	G	2.094e^-5	0.974	INTERGENIC
3L	17944474	3L_17944474_DEL [dm3] 3L_17951374_DEL [dm6]	CC	C	2.291e^-5	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
X	15808619	X_15808619_SNP [dm3] X_15914586_SNP [dm6]	G	A	2.331e^-5	0.974	INTRON CG8909
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	2.610e^-5	0.974	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16555270	X_16555270_SNP [dm3] X_16661237_SNP [dm6]	T	C	2.771e^-5	0.974	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	1277747	3L_1277747_SNP [dm3] 3L_1277747_SNP [dm6]	A	C	2.863e^-5	0.974	INTRON CG32333
3L	9245436	3L_9245436_SNP [dm3] 3L_9252336_SNP [dm6]	T	A	2.884e^-5	0.974	UTR_5_PRIME GluRIB DOWNSTREAM CG4477
3R	23546624	3R_23546624_SNP [dm3] 3R_27720902_SNP [dm6]	C	G	2.940e^-5	0.974	INTERGENIC
2R	17127233	2R_17127233_SNP [dm3] 2R_21239728_SNP [dm6]	A	G	3.071e^-5	0.974	INTRON ASPP
X	517074	X_517074_DEL [dm3] X_623041_DEL [dm6]	AA	A	3.167e^-5	0.974	UTR_3_PRIME mod_r_ UPSTREAM CG13369
3R	18337595	3R_18337595_SNP [dm3] 3R_22511873_SNP [dm6]	G	A	3.230e^-5	0.974	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	14353924	2R_14353924_SNP [dm3] 2R_18466419_SNP [dm6]	G	C	3.250e^-5	0.974	INTRON CG30116
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	3.434e^-5	0.974	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
3L	11434063	3L_11434063_SNP [dm3] 3L_11440963_SNP [dm6]	A	G	3.454e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1248392	3L_1248392_SNP [dm3] 3L_1248392_SNP [dm6]	C	A	3.474e^-5	0.974	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23546658	3R_23546658_SNP [dm3] 3R_27720936_SNP [dm6]	C	T	3.631e^-5	0.974	INTERGENIC
2L	4113414	2L_4113414_SNP [dm3] 2L_4113414_SNP [dm6]	G	T	3.868e^-5	0.974	INTRON ed
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	4.003e^-5	0.974	INTRON dpr6
3R	22715161	3R_22715161_SNP [dm3] 3R_26889439_SNP [dm6]	C	G	4.032e^-5	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	4.038e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	4.040e^-5	0.974	INTRON Tango5
3L	13708813	3L_13708813_SNP [dm3] 3L_13715713_SNP [dm6]	A	G	4.059e^-5	0.974	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1248428	3L_1248428_SNP [dm3] 3L_1248428_SNP [dm6]	A	G	4.101e^-5	0.974	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	4.171e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	4.264e^-5	0.974	INTERGENIC
X	8149714	X_8149714_SNP [dm3] X_8255681_SNP [dm6]	T	A	4.490e^-5	0.974	INTRON CG1632
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	4.492e^-5	0.974	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	4.764e^-5	0.974	INTRON SNF4Agamma
3R	25409024	3R_25409024_SNP [dm3] 3R_29583302_SNP [dm6]	C	A	4.778e^-5	0.974	INTERGENIC
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	4.790e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	11299625	3L_11299625_DEL [dm3] 3L_11306525_DEL [dm6]	AC	A	4.793e^-5	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13452723	3L_13452723_SNP [dm3] 3L_13459623_SNP [dm6]	A	T	4.797e^-5	0.974	INTRON CG10738
X	15128331	X_15128331_SNP [dm3] X_15234298_SNP [dm6]	T	C	4.897e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4582328	2L_4582328_DEL [dm3] 2L_4582328_DEL [dm6]	TACCAAGAAATT...	T	4.922e^-5	0.974	INTRON dp EXON CR43716
2R	17085461	2R_17085461_SNP [dm3] 2R_21197956_SNP [dm6]	C	A	4.993e^-5	0.974	INTRON Lapsyn
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	4.998e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	8622171	X_8622171_SNP [dm3] X_8728138_SNP [dm6]	C	A	5.024e^-5	0.974	INTERGENIC
X	15999934	X_15999934_INS [dm3] X_16105901_INS [dm6]	C	CT	5.035e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	15322780	2R_15322780_SNP [dm3] 2R_19435275_SNP [dm6]	A	T	5.194e^-5	0.974	INTRON Fak
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	5.304e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	17944370	3L_17944370_SNP [dm3] 3L_17951270_SNP [dm6]	C	T	5.627e^-5	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
X	3519415	X_3519415_SNP [dm3] X_3625382_SNP [dm6]	T	G	5.658e^-5	0.974	INTRON AstA-R1
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	5.767e^-5	0.974	INTERGENIC
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	5.777e^-5	0.974	INTERGENIC
2L	15079495	2L_15079495_SNP [dm3] 2L_15079495_SNP [dm6]	A	G	5.913e^-5	0.974	INTRON CG15270	TF binding site BDTNP1_TFBS_twi
2L	17781046	2L_17781046_SNP [dm3] 2L_17781046_SNP [dm6]	C	G	5.972e^-5	0.974	INTERGENIC
3L	4318048	3L_4318048_SNP [dm3] 3L_4318048_SNP [dm6]	C	T	5.986e^-5	0.974	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	5.995e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	6.063e^-5	0.974	INTERGENIC
3L	11795554	3L_11795554_SNP [dm3] 3L_11802454_SNP [dm6]	G	A	6.191e^-5	0.974	SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	6.206e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15999824	X_15999824_SNP [dm3] X_16105791_SNP [dm6]	C	T	6.243e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	6.364e^-5	0.974	INTRON CG14082
X	10284911	X_10284911_SNP [dm3] X_10390878_SNP [dm6]	C	T	6.400e^-5	0.974	INTRON flw
2R	15322778	2R_15322778_SNP [dm3] 2R_19435273_SNP [dm6]	T	G	6.636e^-5	0.974	INTRON Fak
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	6.642e^-5	0.974	INTRON tok EXON snoRNA:Me18S-C1280
3L	19379987	3L_19379987_SNP [dm3] 3L_19386887_SNP [dm6]	A	T	6.705e^-5	0.974	UPSTREAM ms_3_76Ba INTRON CG32206
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	6.710e^-5	0.974	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10132930	2R_10132930_SNP [dm3] 2R_14245425_SNP [dm6]	T	A	6.717e^-5	0.974	NON_SYNONYMOUS_CODING CG8503
X	17990065	X_17990065_SNP [dm3] X_18096032_SNP [dm6]	G	A	6.731e^-5	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18485025	3R_18485025_SNP [dm3] 3R_22659303_SNP [dm6]	T	C	6.876e^-5	0.974	INTRON CG45058
X	8149713	X_8149713_SNP [dm3] X_8255680_SNP [dm6]	T	G	6.943e^-5	0.974	INTRON CG1632
3R	13175328	3R_13175328_SNP [dm3] 3R_17349606_SNP [dm6]	C	T	6.961e^-5	0.974	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	6.966e^-5	0.974	UTR_5_PRIME CG6841 UPSTREAM CSN1b
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	7.009e^-5	0.974	INTERGENIC
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	7.077e^-5	0.974	INTRON CG4374
2R	6814935	2R_6814935_SNP [dm3] 2R_10927430_SNP [dm6]	G	T	7.138e^-5	0.974	INTERGENIC
3R	18582152	3R_18582152_SNP [dm3] 3R_22756430_SNP [dm6]	C	T	7.239e^-5	0.974	INTRON Usp12-46 & 1 other
X	15999808	X_15999808_SNP [dm3] X_16105775_SNP [dm6]	C	T	7.306e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	12169425	X_12169425_SNP [dm3] X_12275392_SNP [dm6]	C	T	7.372e^-5	0.974	DOWNSTREAM CG45603 INTRON Ten-a
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	7.383e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	20761330	3R_20761330_SNP [dm3] 3R_24935608_SNP [dm6]	G	A	7.395e^-5	0.974	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10334553	3L_10334553_SNP [dm3] 3L_10341453_SNP [dm6]	T	A	7.472e^-5	0.974	INTERGENIC
X	8096229	X_8096229_SNP [dm3] X_8202196_SNP [dm6]	G	A	7.568e^-5	0.974	INTRON sdt	TF binding site mE1_TFBS_inv
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	7.684e^-5	0.974	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	10193337	2R_10193337_SNP [dm3] 2R_14305832_SNP [dm6]	G	A	7.712e^-5	0.974	INTERGENIC
X	570113	X_570113_SNP [dm3] X_676080_SNP [dm6]	A	G	7.750e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	3857356	2L_3857356_SNP [dm3] 2L_3857356_SNP [dm6]	T	G	7.785e^-5	0.974	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
3L	15210433	3L_15210433_SNP [dm3] 3L_15217333_SNP [dm6]	G	T	7.925e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1260330	2L_1260330_SNP [dm3] 2L_1260330_SNP [dm6]	C	G	7.998e^-5	0.974	INTRON robo3
2R	11071735	2R_11071735_SNP [dm3] 2R_15184230_SNP [dm6]	C	T	8.048e^-5	0.974	UPSTREAM CG43068 INTRON igl
X	4989040	X_4989040_SNP [dm3] X_5095007_SNP [dm6]	T	A	8.055e^-5	0.974	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4989041	X_4989041_SNP [dm3] X_5095008_SNP [dm6]	G	A	8.055e^-5	0.974	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	673779	X_673779_SNP [dm3] X_779746_SNP [dm6]	T	A	8.090e^-5	0.974	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	8.092e^-5	0.974	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17990435	X_17990435_SNP [dm3] X_18096402_SNP [dm6]	T	C	8.279e^-5	0.974	SYNONYMOUS_CODING RhoGAP16F
X	1783119	X_1783119_SNP [dm3] X_1889086_SNP [dm6]	T	G	8.320e^-5	0.974	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	15128504	X_15128504_SNP [dm3] X_15234471_SNP [dm6]	G	T	8.376e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11047990	3L_11047990_SNP [dm3] 3L_11054890_SNP [dm6]	A	T	8.643e^-5	0.974	UPSTREAM CG7888 INTRON CG7888
X	663234	X_663234_SNP [dm3] X_769201_SNP [dm6]	G	A	8.683e^-5	0.974	UPSTREAM fz3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15999675	X_15999675_INS [dm3] X_16105642_INS [dm6]	T	TTA	8.725e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	22306203	2L_22306203_SNP [dm3] 2L_22306203_SNP [dm6]	T	C	8.734e^-5	0.974	INTERGENIC
2R	16939931	2R_16939931_SNP [dm3] 2R_21052426_SNP [dm6]	T	A	8.747e^-5	0.974	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1257753	3L_1257753_SNP [dm3] 3L_1257753_SNP [dm6]	C	T	9.007e^-5	0.974	INTRON CG9134
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	9.049e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13583355	3R_13583355_SNP [dm3] 3R_17757633_SNP [dm6]	G	C	9.111e^-5	0.974	UTR_5_PRIME TyrR	TF binding site mE1_TFBS_chinmo
3L	15596878	3L_15596878_SNP [dm3] 3L_15603778_SNP [dm6]	T	C	9.143e^-5	0.974	DOWNSTREAM RhoGAP71E INTRON RhoGAP71E
2R	6816221	2R_6816221_SNP [dm3] 2R_10928716_SNP [dm6]	A	C	9.223e^-5	0.974	INTERGENIC
2R	17740117	2R_17740117_SNP [dm3] 2R_21852612_SNP [dm6]	G	A	9.287e^-5	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	9.313e^-5	0.974	INTERGENIC
3L	18573428	3L_18573428_SNP [dm3] 3L_18580328_SNP [dm6]	T	A	9.315e^-5	0.974	INTERGENIC
X	577396	X_577396_SNP [dm3] X_683363_SNP [dm6]	A	T	9.388e^-5	0.974	INTERGENIC
X	15257788	X_15257788_SNP [dm3] X_15363755_SNP [dm6]	T	A	9.401e^-5	0.974	INTRON acj6
3L	7532091	3L_7532091_SNP [dm3] 3L_7538991_SNP [dm6]	A	G	9.492e^-5	0.974	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3L	1263330	3L_1263330_SNP [dm3] 3L_1263330_SNP [dm6]	T	G	9.514e^-5	0.974	INTRON CG9134
3L	2511566	3L_2511566_SNP [dm3] 3L_2511566_SNP [dm6]	T	C	9.616e^-5	0.974	SYNONYMOUS_CODING Spn
3L	13709205	3L_13709205_SNP [dm3] 3L_13716105_SNP [dm6]	A	G	9.671e^-5	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18327550	2R_18327550_SNP [dm3] 2R_22440045_SNP [dm6]	A	G	1.005e^-4	0.974	INTERGENIC
X	17989903	X_17989903_SNP [dm3] X_18095870_SNP [dm6]	A	G	1.007e^-4	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6911185	3R_6911185_SNP [dm3] 3R_11085463_SNP [dm6]	A	G	1.010e^-4	0.974	EXON CR44940
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	1.011e^-4	0.974	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	13947302	2R_13947302_SNP [dm3] 2R_18059797_SNP [dm6]	A	G	1.032e^-4	0.974	UPSTREAM CR45314 INTERGENIC
2R	12129675	2R_12129675_SNP [dm3] 2R_16242170_SNP [dm6]	G	A	1.034e^-4	0.974	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3L	15294701	3L_15294701_SNP [dm3] 3L_15301601_SNP [dm6]	C	G	1.059e^-4	0.974	SYNONYMOUS_CODING Best3 DOWNSTREAM Best4	TF binding site mE1_TFBS_sens
3L	1250879	3L_1250879_SNP [dm3] 3L_1250879_SNP [dm6]	G	A	1.060e^-4	0.974	START_LOST CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3R	15164315	3R_15164315_SNP [dm3] 3R_19338593_SNP [dm6]	G	C	1.064e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1352394	2L_1352394_SNP [dm3] 2L_1352394_SNP [dm6]	C	T	1.070e^-4	0.974	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
2R	11776542	2R_11776542_SNP [dm3] 2R_15889037_SNP [dm6]	C	T	1.070e^-4	0.974	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6651940	3R_6651940_SNP [dm3] 3R_10826218_SNP [dm6]	A	G	1.073e^-4	0.974	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19589160	3R_19589160_SNP [dm3] 3R_23763438_SNP [dm6]	A	T	1.089e^-4	0.974	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	5805805	2L_5805805_SNP [dm3] 2L_5805805_SNP [dm6]	T	C	1.093e^-4	0.974	INTRON CG11034	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	18665570	2R_18665570_SNP [dm3] 2R_22778065_SNP [dm6]	G	A	1.094e^-4	0.974	INTRON CG42260
3L	499585	3L_499585_SNP [dm3] 3L_499585_SNP [dm6]	C	T	1.113e^-4	0.974	DOWNSTREAM CG34267 INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3845094	2L_3845094_SNP [dm3] 2L_3845094_SNP [dm6]	T	A	1.115e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15294257	3L_15294257_SNP [dm3] 3L_15301157_SNP [dm6]	G	A	1.132e^-4	0.974	SYNONYMOUS_CODING Best3 DOWNSTREAM Best4
2R	10873821	2R_10873821_SNP [dm3] 2R_14986316_SNP [dm6]	C	A	1.132e^-4	0.974	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4113413	2L_4113413_SNP [dm3] 2L_4113413_SNP [dm6]	T	A	1.133e^-4	0.974	INTRON ed
X	4487149	X_4487149_SNP [dm3] X_4593116_SNP [dm6]	G	A	1.133e^-4	0.974	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	7226624	2R_7226624_SNP [dm3] 2R_11339119_SNP [dm6]	T	C	1.134e^-4	0.974	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	15509151	3L_15509151_SNP [dm3] 3L_15516051_SNP [dm6]	A	C	1.136e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	1.145e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15999784	X_15999784_SNP [dm3] X_16105751_SNP [dm6]	C	A	1.147e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	10873822	2R_10873822_SNP [dm3] 2R_14986317_SNP [dm6]	G	T	1.150e^-4	0.974	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19475561	2R_19475561_SNP [dm3] 2R_23588038_SNP [dm6]	T	G	1.164e^-4	0.974	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	16909935	X_16909935_SNP [dm3] X_17015902_SNP [dm6]	G	A	1.167e^-4	0.974	INTRON CG45002
3L	13396948	3L_13396948_SNP [dm3] 3L_13403848_SNP [dm6]	C	T	1.180e^-4	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	7908766	3L_7908766_SNP [dm3] 3L_7915666_SNP [dm6]	A	G	1.181e^-4	0.974	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	15324740	X_15324740_SNP [dm3] X_15430707_SNP [dm6]	C	G	1.190e^-4	0.974	INTRON Cngl
2L	19246806	2L_19246806_SNP [dm3] 2L_19246806_SNP [dm6]	C	T	1.195e^-4	0.974	INTERGENIC
3R	9498329	3R_9498329_SNP [dm3] 3R_13672607_SNP [dm6]	A	T	1.199e^-4	0.974	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10334533	3L_10334533_SNP [dm3] 3L_10341433_SNP [dm6]	T	A	1.212e^-4	0.974	INTERGENIC
3L	17586077	3L_17586077_DEL [dm3] 3L_17592977_DEL [dm6]	CTACTGAACGT...	C	1.216e^-4	0.974	INTRON Eip74EF
X	3519051	X_3519051_DEL [dm3] X_3625018_DEL [dm6]	GG	G	1.221e^-4	0.974	INTRON AstA-R1
2R	10657418	2R_10657418_SNP [dm3] 2R_14769913_SNP [dm6]	C	G	1.229e^-4	0.974	NON_SYNONYMOUS_CODING CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	1.231e^-4	0.974	INTERGENIC
X	15999613	X_15999613_SNP [dm3] X_16105580_SNP [dm6]	A	C	1.238e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	19475912	3R_19475912_SNP [dm3] 3R_23650190_SNP [dm6]	A	G	1.249e^-4	0.974	INTRON CG31145
2R	7226735	2R_7226735_SNP [dm3] 2R_11339230_SNP [dm6]	A	C	1.254e^-4	0.974	UTR_3_PRIME zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3845086	2L_3845086_SNP [dm3] 2L_3845086_SNP [dm6]	A	G	1.254e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16983481	3L_16983481_SNP [dm3] 3L_16990381_SNP [dm6]	T	A	1.263e^-4	0.974	INTRON Exn
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	1.266e^-4	0.974	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	721579	2L_721579_SNP [dm3] 2L_721579_SNP [dm6]	C	G	1.266e^-4	0.974	INTERGENIC
3R	16289156	3R_16289156_SNP [dm3] 3R_20463434_SNP [dm6]	T	C	1.272e^-4	0.974	INTRON Gfrl
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	1.274e^-4	0.974	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
X	16824691	X_16824691_SNP [dm3] X_16930658_SNP [dm6]	T	C	1.282e^-4	0.974	INTRON CG4928
3L	13292673	3L_13292673_SNP [dm3] 3L_13299573_SNP [dm6]	G	T	1.286e^-4	0.974	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3L	23833947	3L_23833947_SNP [dm3] 3L_23840847_SNP [dm6]	A	T	1.293e^-4	0.974	INTRON CG40470
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	1.293e^-4	0.974	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	17264248	3L_17264248_SNP [dm3] 3L_17271148_SNP [dm6]	T	C	1.302e^-4	0.974	INTERGENIC
X	15999943	X_15999943_SNP [dm3] X_16105910_SNP [dm6]	G	A	1.303e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	14567153	2R_14567153_SNP [dm3] 2R_18679648_SNP [dm6]	C	T	1.304e^-4	0.974	NON_SYNONYMOUS_CODING CG44435 UTR_3_PRIME CG44434	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
2L	9460389	2L_9460389_SNP [dm3] 2L_9460389_SNP [dm6]	G	C	1.306e^-4	0.974	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10446958	2L_10446958_SNP [dm3] 2L_10446958_SNP [dm6]	C	T	1.309e^-4	0.974	UPSTREAM loh INTRON loh
2R	4591960	2R_4591960_SNP [dm3] 2R_8704455_SNP [dm6]	G	A	1.311e^-4	0.974	UTR_3_PRIME CG12376
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	1.319e^-4	0.974	INTERGENIC
3L	13542947	3L_13542947_SNP [dm3] 3L_13549847_SNP [dm6]	G	A	1.319e^-4	0.974	INTRON bru-3
2R	18665521	2R_18665521_DEL [dm3] 2R_22778016_DEL [dm6]	TA	G	1.327e^-4	0.974	INTRON CG42260
2L	3844988	2L_3844988_SNP [dm3] 2L_3844988_SNP [dm6]	A	T	1.330e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10657239	2R_10657239_SNP [dm3] 2R_14769734_SNP [dm6]	T	G	1.331e^-4	0.974	UTR_3_PRIME CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2R	7952764	2R_7952764_INS [dm3] 2R_12065259_INS [dm6]	G	GGGTGGAAAG	1.335e^-4	0.974	INTRON CG8888
3L	1276022	3L_1276022_SNP [dm3] 3L_1276022_SNP [dm6]	G	A	1.350e^-4	0.974	UTR_5_PRIME CG32333	TF binding site mE1_TFBS_Trl
X	5700819	X_5700819_SNP [dm3] X_5806786_SNP [dm6]	A	G	1.356e^-4	0.974	INTERGENIC
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	1.359e^-4	0.974	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
X	16435414	X_16435414_SNP [dm3] X_16541381_SNP [dm6]	A	G	1.366e^-4	0.974	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	1.368e^-4	0.974	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	1.379e^-4	0.974	INTERGENIC
3R	6911173	3R_6911173_SNP [dm3] 3R_11085451_SNP [dm6]	T	C	1.390e^-4	0.974	EXON CR44940
3L	7532087	3L_7532087_SNP [dm3] 3L_7538987_SNP [dm6]	A	T	1.405e^-4	0.974	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
2R	12675068	2R_12675068_DEL [dm3] 2R_16787563_DEL [dm6]	TACATATGT	T	1.410e^-4	0.974	INTRON CG5522
X	16824705	X_16824705_SNP [dm3] X_16930672_SNP [dm6]	C	T	1.411e^-4	0.974	INTRON CG4928
2R	9011664	2R_9011664_SNP [dm3] 2R_13124159_SNP [dm6]	T	C	1.419e^-4	0.974	NON_SYNONYMOUS_CODING CG13325
2R	9012920	2R_9012920_SNP [dm3] 2R_13125415_SNP [dm6]	G	C	1.419e^-4	0.974	NON_SYNONYMOUS_CODING CG13325
X	17990413	X_17990413_SNP [dm3] X_18096380_SNP [dm6]	C	T	1.429e^-4	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna
2R	17418934	2R_17418934_SNP [dm3] 2R_21531429_SNP [dm6]	C	T	1.465e^-4	0.974	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
3L	15509021	3L_15509021_SNP [dm3] 3L_15515921_SNP [dm6]	T	G	1.478e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	18665528	2R_18665528_DEL [dm3] 2R_22778023_DEL [dm6]	TGAATCC	T	1.486e^-4	0.974	INTRON CG42260
2R	18665556	2R_18665556_DEL [dm3] 2R_22778051_DEL [dm6]	AGTGTCGACCGAC...	A	1.486e^-4	0.974	INTRON CG42260
2L	3845045	2L_3845045_SNP [dm3] 2L_3845045_SNP [dm6]	G	T	1.488e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16966647	2R_16966647_SNP [dm3] 2R_21079142_SNP [dm6]	T	G	1.490e^-4	0.974	INTRON Treh
X	4287920	X_4287920_SNP [dm3] X_4393887_SNP [dm6]	T	C	1.500e^-4	0.974	INTRON CR32773 EXON CR32773
3L	11299654	3L_11299654_SNP [dm3] 3L_11306554_SNP [dm6]	T	C	1.506e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8383762	3L_8383762_SNP [dm3] 3L_8390662_SNP [dm6]	A	G	1.508e^-4	0.974	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci
3L	15509025	3L_15509025_SNP [dm3] 3L_15515925_SNP [dm6]	T	A	1.509e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18468957	3R_18468957_SNP [dm3] 3R_22643235_SNP [dm6]	T	C	1.523e^-4	0.974	INTRON CG45058
2R	18665544	2R_18665544_DEL [dm3] 2R_22778039_DEL [dm6]	CGCCAGAGG	C	1.525e^-4	0.974	INTRON CG42260
3L	8651688	3L_8651688_SNP [dm3] 3L_8658588_SNP [dm6]	A	C	1.530e^-4	0.974	INTERGENIC
3L	2402123	3L_2402123_INS [dm3] 3L_2402123_INS [dm6]	C	TT	1.544e^-4	0.974	INTRON CG45186
3R	6845730	3R_6845730_SNP [dm3] 3R_11020008_SNP [dm6]	G	A	1.544e^-4	0.974	INTRON CG34114
3L	2357622	3L_2357622_INS [dm3] 3L_2357622_INS [dm6]	A	ATATTTACA	1.560e^-4	0.974	INTERGENIC
X	17989986	X_17989986_SNP [dm3] X_18095953_SNP [dm6]	A	G	1.573e^-4	0.974	NON_SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10193444	2R_10193444_SNP [dm3] 2R_14305939_SNP [dm6]	C	T	1.582e^-4	0.974	INTERGENIC
3R	19589473	3R_19589473_SNP [dm3] 3R_23763751_SNP [dm6]	T	C	1.588e^-4	0.974	UPSTREAM Lsd-1 & 1 other INTERGENIC
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	1.603e^-4	0.974	INTERGENIC
3R	21044770	3R_21044770_SNP [dm3] 3R_25219048_SNP [dm6]	C	T	1.608e^-4	0.974	UPSTREAM CG31103 DOWNSTREAM CG31106 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	663346	X_663346_INS [dm3] X_769313_INS [dm6]	C	CTGC	1.610e^-4	0.974	UPSTREAM fz3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7226786	2R_7226786_SNP [dm3] 2R_11339281_SNP [dm6]	G	T	1.612e^-4	0.974	SYNONYMOUS_CODING zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	18499204	3R_18499204_SNP [dm3] 3R_22673482_SNP [dm6]	T	A	1.615e^-4	0.974	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	3429714	2R_3429714_SNP [dm3] 2R_7542209_SNP [dm6]	C	T	1.623e^-4	0.974	INTRON Corin
X	4066478	X_4066478_SNP [dm3] X_4172445_SNP [dm6]	A	C	1.646e^-4	0.974	INTRON Fas2
2R	18992429	2R_18992429_SNP [dm3] 2R_23104906_SNP [dm6]	G	T	1.654e^-4	0.974	SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15999913	X_15999913_SNP [dm3] X_16105880_SNP [dm6]	A	G	1.658e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14541067	3L_14541067_DEL [dm3] 3L_14547967_DEL [dm6]	TACTTGT	T	1.659e^-4	0.974	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13804230	2L_13804230_SNP [dm3] 2L_13804230_SNP [dm6]	T	C	1.665e^-4	0.974	INTRON CAH1
3L	1436231	3L_1436231_SNP [dm3] 3L_1436231_SNP [dm6]	G	C	1.674e^-4	0.974	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15509159	3L_15509159_SNP [dm3] 3L_15516059_SNP [dm6]	G	A	1.687e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	15993452	2R_15993452_MNP [dm3] 2R_20105947_MNP [dm6]	GAA	CCT	1.701e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	18663342	2R_18663342_SNP [dm3] 2R_22775837_SNP [dm6]	C	A	1.704e^-4	0.974	INTRON CG42260
2R	16939934	2R_16939934_SNP [dm3] 2R_21052429_SNP [dm6]	C	G	1.713e^-4	0.974	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14658259	3R_14658259_SNP [dm3] 3R_18832537_SNP [dm6]	T	A	1.731e^-4	0.974	INTRON CG18208
3L	1251081	3L_1251081_SNP [dm3] 3L_1251081_SNP [dm6]	C	T	1.731e^-4	0.974	NON_SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
X	12930851	X_12930851_SNP [dm3] X_13036818_SNP [dm6]	G	A	1.732e^-4	0.974	INTRON rad
3R	19128295	3R_19128295_INS [dm3] 3R_23302573_INS [dm6]	G	GA	1.735e^-4	0.974	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
X	574558	X_574558_SNP [dm3] X_680525_SNP [dm6]	G	C	1.747e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	10137440	2R_10137440_SNP [dm3] 2R_14249935_SNP [dm6]	C	T	1.752e^-4	0.974	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
2L	5805164	2L_5805164_SNP [dm3] 2L_5805164_SNP [dm6]	C	A	1.753e^-4	0.974	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20986091	3R_20986091_SNP [dm3] 3R_25160369_SNP [dm6]	G	C	1.756e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18127102	3L_18127102_SNP [dm3] 3L_18134002_SNP [dm6]	C	T	1.757e^-4	0.974	INTERGENIC
X	10261765	X_10261765_SNP [dm3] X_10367732_SNP [dm6]	G	C	1.762e^-4	0.974	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	18665536	2R_18665536_SNP [dm3] 2R_22778031_SNP [dm6]	T	C	1.779e^-4	0.974	INTRON CG42260
2R	18665538	2R_18665538_SNP [dm3] 2R_22778033_SNP [dm6]	T	A	1.779e^-4	0.974	INTRON CG42260
2R	18665526	2R_18665526_SNP [dm3] 2R_22778021_SNP [dm6]	A	T	1.784e^-4	0.974	INTRON CG42260
3L	2995056	3L_2995056_SNP [dm3] 3L_2995056_SNP [dm6]	T	C	1.786e^-4	0.974	UPSTREAM CG2113 INTERGENIC
X	17324201	X_17324201_SNP [dm3] X_17430168_SNP [dm6]	T	C	1.786e^-4	0.974	INTRON CG12994
3R	10983276	3R_10983276_SNP [dm3] 3R_15157554_SNP [dm6]	T	A	1.790e^-4	0.974	INTRON Gyc88E
X	16716716	X_16716716_SNP [dm3] X_16822683_SNP [dm6]	C	T	1.791e^-4	0.974	SYNONYMOUS_CODING CG4829 START_GAINED CG4829 UTR_5_PRIME CG4829
3L	15261121	3L_15261121_SNP [dm3] 3L_15268021_SNP [dm6]	A	T	1.799e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	19790096	2R_19790096_SNP [dm3] 2R_23902573_SNP [dm6]	C	T	1.800e^-4	0.974	INTRON Lpt
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	1.802e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11136785	3L_11136785_SNP [dm3] 3L_11143685_SNP [dm6]	G	C	1.804e^-4	0.974	INTRON CG32082
3R	13570030	3R_13570030_SNP [dm3] 3R_17744308_SNP [dm6]	A	C	1.804e^-4	0.974	SPLICE_SITE_REGION TyrRII INTRON TyrRII	TF binding site mE1_TFBS_cad
2L	3857131	2L_3857131_SNP [dm3] 2L_3857131_SNP [dm6]	A	T	1.812e^-4	0.974	EXON CR45450	TF binding site mE1_TFBS_sens
2L	4846392	2L_4846392_SNP [dm3] 2L_4846392_SNP [dm6]	G	T	1.812e^-4	0.974	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	13005394	2L_13005394_SNP [dm3] 2L_13005394_SNP [dm6]	G	C	1.818e^-4	0.974	INTRON Tor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5805721	2L_5805721_SNP [dm3] 2L_5805721_SNP [dm6]	C	T	1.821e^-4	0.974	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	10061071	X_10061071_SNP [dm3] X_10167038_SNP [dm6]	T	C	1.828e^-4	0.974	INTRON CR44894 & 1 other
3L	11129895	3L_11129895_SNP [dm3] 3L_11136795_SNP [dm6]	G	A	1.829e^-4	0.974	INTRON CG32082
3R	10910191	3R_10910191_SNP [dm3] 3R_15084469_SNP [dm6]	A	G	1.832e^-4	0.974	INTRON CG6966
2L	3844995	2L_3844995_SNP [dm3] 2L_3844995_SNP [dm6]	C	A	1.835e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18665524	2R_18665524_SNP [dm3] 2R_22778019_SNP [dm6]	C	T	1.838e^-4	0.974	INTRON CG42260
3L	18192022	3L_18192022_SNP [dm3] 3L_18198922_SNP [dm6]	G	T	1.841e^-4	0.974	INTERGENIC
2R	10456793	2R_10456793_SNP [dm3] 2R_14569288_SNP [dm6]	G	C	1.855e^-4	0.974	INTRON ttv
3R	19283763	3R_19283763_SNP [dm3] 3R_23458041_SNP [dm6]	A	G	1.857e^-4	0.974	INTRON CG4374
3R	6911160	3R_6911160_SNP [dm3] 3R_11085438_SNP [dm6]	G	A	1.860e^-4	0.974	EXON CR44940
3L	8651680	3L_8651680_SNP [dm3] 3L_8658580_SNP [dm6]	G	A	1.861e^-4	0.974	INTERGENIC
X	17075783	X_17075783_SNP [dm3] X_17181750_SNP [dm6]	T	C	1.867e^-4	0.974	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18722481	2R_18722481_SNP [dm3] 2R_22834958_SNP [dm6]	G	A	1.867e^-4	0.974	DOWNSTREAM CG30265 INTRON CG12490
3L	2322939	3L_2322939_SNP [dm3] 3L_2322939_SNP [dm6]	C	T	1.868e^-4	0.974	INTRON MsR1
X	12169327	X_12169327_SNP [dm3] X_12275294_SNP [dm6]	T	C	1.870e^-4	0.974	DOWNSTREAM CG45603 INTRON Ten-a
X	18022170	X_18022170_DEL [dm3] X_18128137_DEL [dm6]	CCGT	G	1.874e^-4	0.974	UPSTREAM mir-210 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17990001	X_17990001_SNP [dm3] X_18095968_SNP [dm6]	C	G	1.894e^-4	0.974	NON_SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	12502577	X_12502577_SNP [dm3] X_12608544_SNP [dm6]	A	G	1.910e^-4	0.974	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
X	517010	X_517010_DEL [dm3] X_622977_DEL [dm6]	CC	C	1.911e^-4	0.974	UTR_3_PRIME mod_r_ UPSTREAM CG13369
2L	16806855	2L_16806855_SNP [dm3] 2L_16806855_SNP [dm6]	T	A	1.923e^-4	0.974	UPSTREAM CG13272 INTRON CG13280 & 1 other
3R	19589472	3R_19589472_SNP [dm3] 3R_23763750_SNP [dm6]	C	A	1.936e^-4	0.974	UPSTREAM Lsd-1 & 1 other INTERGENIC
X	577387	X_577387_SNP [dm3] X_683354_SNP [dm6]	G	C	1.936e^-4	0.974	INTERGENIC
2R	10062573	2R_10062573_SNP [dm3] 2R_14175068_SNP [dm6]	G	A	1.940e^-4	0.974	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10062775	2R_10062775_SNP [dm3] 2R_14175270_SNP [dm6]	C	A	1.940e^-4	0.974	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
X	6439695	X_6439695_SNP [dm3] X_6545662_SNP [dm6]	A	T	1.943e^-4	0.974	UPSTREAM CG34417 INTRON CG34417	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18898719	3L_18898719_INS [dm3] 3L_18905619_INS [dm6]	A	ATCTACC	1.944e^-4	0.974	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
3L	18898724	3L_18898724_SNP [dm3] 3L_18905624_SNP [dm6]	A	G	1.944e^-4	0.974	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2L	5805482	2L_5805482_SNP [dm3] 2L_5805482_SNP [dm6]	C	T	1.944e^-4	0.974	NON_SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	18897364	3L_18897364_SNP [dm3] 3L_18904264_SNP [dm6]	C	T	1.947e^-4	0.974	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	572392	X_572392_SNP [dm3] X_678359_SNP [dm6]	C	T	1.966e^-4	0.974	INTERGENIC
X	572393	X_572393_SNP [dm3] X_678360_SNP [dm6]	G	C	1.966e^-4	0.974	INTERGENIC
2R	17146783	2R_17146783_INS [dm3] 2R_21259278_INS [dm6]	A	AG	1.967e^-4	0.974	INTRON Rgk3
3L	17586019	3L_17586019_SNP [dm3] 3L_17592919_SNP [dm6]	C	T	1.968e^-4	0.974	INTRON Eip74EF
X	569102	X_569102_SNP [dm3] X_675069_SNP [dm6]	G	C	1.972e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	12930948	X_12930948_SNP [dm3] X_13036915_SNP [dm6]	G	A	1.976e^-4	0.974	INTRON rad
2R	15993968	2R_15993968_SNP [dm3] 2R_20106463_SNP [dm6]	T	C	1.998e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	6292331	X_6292331_SNP [dm3] X_6398298_SNP [dm6]	T	G	2.001e^-4	0.974	INTERGENIC
3L	15278056	3L_15278056_SNP [dm3] 3L_15284956_SNP [dm6]	A	G	2.010e^-4	0.974	INTERGENIC
3R	19844833	3R_19844833_SNP [dm3] 3R_24019111_SNP [dm6]	C	A	2.013e^-4	0.974	INTRON KrT95D
2R	15480558	2R_15480558_SNP [dm3] 2R_19593053_SNP [dm6]	T	A	2.024e^-4	0.974	UPSTREAM CG16716 INTRON sm
X	6270163	X_6270163_INS [dm3] X_6376130_INS [dm6]	C	CATTACCATCC...	2.030e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	18665543	2R_18665543_SNP [dm3] 2R_22778038_SNP [dm6]	A	T	2.034e^-4	0.974	INTRON CG42260
3L	10334524	3L_10334524_SNP [dm3] 3L_10341424_SNP [dm6]	A	T	2.041e^-4	0.974	INTERGENIC
3R	6911112	3R_6911112_SNP [dm3] 3R_11085390_SNP [dm6]	A	T	2.052e^-4	0.974	EXON CR44940
3L	10334563	3L_10334563_SNP [dm3] 3L_10341463_SNP [dm6]	T	A	2.058e^-4	0.974	INTERGENIC
3L	18898741	3L_18898741_SNP [dm3] 3L_18905641_SNP [dm6]	G	A	2.073e^-4	0.974	UPSTREAM CSN1b INTRON CG6841	TF binding site mE1_TFBS_cad
2L	4582378	2L_4582378_DEL [dm3] 2L_4582378_DEL [dm6]	TG	T	2.076e^-4	0.974	INTRON dp EXON CR43716
3L	10362054	3L_10362054_SNP [dm3] 3L_10368954_SNP [dm6]	C	G	2.091e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3689103	2L_3689103_SNP [dm3] 2L_3689103_SNP [dm6]	G	A	2.091e^-4	0.974	INTRON CG34340
2L	14084144	2L_14084144_SNP [dm3] 2L_14084144_SNP [dm6]	C	T	2.092e^-4	0.974	INTRON nAChRalpha5
3L	10143422	3L_10143422_SNP [dm3] 3L_10150322_SNP [dm6]	A	G	2.093e^-4	0.974	INTRON dpr10
3L	14544383	3L_14544383_SNP [dm3] 3L_14551283_SNP [dm6]	C	T	2.103e^-4	0.974	UPSTREAM CG9238 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	12483887	2L_12483887_SNP [dm3] 2L_12483887_SNP [dm6]	A	G	2.107e^-4	0.974	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	19438074	2R_19438074_SNP [dm3] 2R_23550551_SNP [dm6]	G	A	2.111e^-4	0.974	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
2L	13462061	2L_13462061_SNP [dm3] 2L_13462061_SNP [dm6]	T	A	2.114e^-4	0.974	UTR_5_PRIME CG42784 INTRON CG42784	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	17594352	3L_17594352_SNP [dm3] 3L_17601252_SNP [dm6]	T	G	2.126e^-4	0.974	INTRON Eip74EF
3R	19283725	3R_19283725_DEL [dm3] 3R_23458003_DEL [dm6]	TG	T	2.133e^-4	0.974	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2R	17718565	2R_17718565_SNP [dm3] 2R_21831060_SNP [dm6]	G	T	2.151e^-4	0.974	INTRON CG13492
2L	3695799	2L_3695799_SNP [dm3] 2L_3695799_SNP [dm6]	G	A	2.155e^-4	0.974	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2L	20130301	2L_20130301_SNP [dm3] 2L_20130301_SNP [dm6]	A	G	2.163e^-4	0.974	INTERGENIC
3R	10910192	3R_10910192_SNP [dm3] 3R_15084470_SNP [dm6]	G	T	2.165e^-4	0.974	INTRON CG6966
3L	7532093	3L_7532093_SNP [dm3] 3L_7538993_SNP [dm6]	A	G	2.165e^-4	0.974	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
X	16000057	X_16000057_SNP [dm3] X_16106024_SNP [dm6]	C	A	2.173e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
X	17989954	X_17989954_SNP [dm3] X_18095921_SNP [dm6]	T	G	2.175e^-4	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7304656	2L_7304656_SNP [dm3] 2L_7304656_SNP [dm6]	G	A	2.177e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1666520	3L_1666520_SNP [dm3] 3L_1666520_SNP [dm6]	A	G	2.178e^-4	0.974	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634b & 3 others INTRON Uhg7 EXON snoRNA:Me28S-A2634c	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
X	10261768	X_10261768_SNP [dm3] X_10367735_SNP [dm6]	T	G	2.194e^-4	0.974	UPSTREAM CG17841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
X	642549	X_642549_SNP [dm3] X_748516_SNP [dm6]	G	T	2.197e^-4	0.974	UTR_3_PRIME sdk DOWNSTREAM CG13362
3L	903413	3L_903413_SNP [dm3] 3L_903413_SNP [dm6]	A	T	2.203e^-4	0.974	NON_SYNONYMOUS_CODING CG13905
X	15257791	X_15257791_SNP [dm3] X_15363758_SNP [dm6]	A	T	2.204e^-4	0.974	INTRON acj6
3L	18278977	3L_18278977_SNP [dm3] 3L_18285877_SNP [dm6]	T	G	2.210e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	8276671	2L_8276671_SNP [dm3] 2L_8276671_SNP [dm6]	T	A	2.225e^-4	0.974	INTRON Btk29A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	18483257	3R_18483257_SNP [dm3] 3R_22657535_SNP [dm6]	G	A	2.227e^-4	0.974	INTRON CG45058
X	15808604	X_15808604_SNP [dm3] X_15914571_SNP [dm6]	T	C	2.228e^-4	0.974	INTRON CG8909
2R	15994465	2R_15994465_SNP [dm3] 2R_20106960_SNP [dm6]	A	T	2.234e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	15994466	2R_15994466_SNP [dm3] 2R_20106961_SNP [dm6]	T	C	2.234e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17579719	2R_17579719_SNP [dm3] 2R_21692214_SNP [dm6]	A	T	2.237e^-4	0.974	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
2L	9059293	2L_9059293_SNP [dm3] 2L_9059293_SNP [dm6]	A	G	2.240e^-4	0.974	INTRON CG31708
2L	15085179	2L_15085179_SNP [dm3] 2L_15085179_SNP [dm6]	A	C	2.243e^-4	0.974	INTRON CG15270
3L	14015599	3L_14015599_SNP [dm3] 3L_14022499_SNP [dm6]	G	C	2.252e^-4	0.974	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4066456	X_4066456_SNP [dm3] X_4172423_SNP [dm6]	G	C	2.254e^-4	0.974	INTRON Fas2
3L	499603	3L_499603_SNP [dm3] 3L_499603_SNP [dm6]	C	T	2.255e^-4	0.974	DOWNSTREAM CG34267 INTRON klar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1404031	3L_1404031_INS [dm3] 3L_1404031_INS [dm6]	A	ACA	2.268e^-4	0.974	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	663115	X_663115_SNP [dm3] X_769082_SNP [dm6]	A	G	2.273e^-4	0.974	UPSTREAM fz3 INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_sens mE1_TFBS_Trl
3R	26190347	3R_26190347_SNP [dm3] 3R_30364625_SNP [dm6]	T	C	2.285e^-4	0.974	UTR_3_PRIME hdc
2L	5619659	2L_5619659_SNP [dm3] 2L_5619659_SNP [dm6]	G	T	2.287e^-4	0.974	DOWNSTREAM CR44796 & 1 other INTERGENIC
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	2.295e^-4	0.974	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12986198	3L_12986198_SNP [dm3] 3L_12993098_SNP [dm6]	T	A	2.304e^-4	0.974	INTERGENIC
2R	4680357	2R_4680357_SNP [dm3] 2R_8792852_SNP [dm6]	G	A	2.306e^-4	0.974	NON_SYNONYMOUS_CODING CG8746	TF binding site mE1_TFBS_cad
2R	3425376	2R_3425376_SNP [dm3] 2R_7537871_SNP [dm6]	T	C	2.322e^-4	0.974	SYNONYMOUS_CODING CG2137 DOWNSTREAM CG1598	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14259792	3L_14259792_SNP [dm3] 3L_14266692_SNP [dm6]	C	A	2.322e^-4	0.974	INTERGENIC
3R	16328036	3R_16328036_SNP [dm3] 3R_20502314_SNP [dm6]	G	A	2.325e^-4	0.974	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2L	2795754	2L_2795754_SNP [dm3] 2L_2795754_SNP [dm6]	A	G	2.341e^-4	0.974	UPSTREAM Syt1 INTRON Syt1
3L	15509132	3L_15509132_SNP [dm3] 3L_15516032_SNP [dm6]	G	A	2.344e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	2.348e^-4	0.974	INTERGENIC
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	2.352e^-4	0.974	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14450034	3L_14450034_SNP [dm3] 3L_14456934_SNP [dm6]	C	T	2.364e^-4	0.974	INTRON bbg	TF binding site mE1_TFBS_cad
X	15999634	X_15999634_SNP [dm3] X_16105601_SNP [dm6]	T	G	2.367e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	13708867	3L_13708867_SNP [dm3] 3L_13715767_SNP [dm6]	A	G	2.370e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13452755	3L_13452755_SNP [dm3] 3L_13459655_SNP [dm6]	T	C	2.371e^-4	0.974	INTRON CG10738
3R	22821899	3R_22821899_SNP [dm3] 3R_26996177_SNP [dm6]	G	A	2.374e^-4	0.974	SYNONYMOUS_CODING TwdlC UPSTREAM RYa-R	TF binding site mE1_TFBS_chinmo
X	14057624	X_14057624_SNP [dm3] X_14163591_SNP [dm6]	C	T	2.375e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	12333720	2R_12333720_SNP [dm3] 2R_16446215_SNP [dm6]	T	A	2.375e^-4	0.974	UTR_5_PRIME CG15925
3L	9291423	3L_9291423_SNP [dm3] 3L_9298323_SNP [dm6]	T	C	2.382e^-4	0.974	INTERGENIC
3L	1249505	3L_1249505_SNP [dm3] 3L_1249505_SNP [dm6]	G	A	2.383e^-4	0.974	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26494838	3R_26494838_SNP [dm3] 3R_30669116_SNP [dm6]	C	A	2.384e^-4	0.974	INTERGENIC
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	2.390e^-4	0.974	INTRON CG42534
3L	12810748	3L_12810748_SNP [dm3] 3L_12817648_SNP [dm6]	T	C	2.391e^-4	0.974	NON_SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1609518	2L_1609518_SNP [dm3] 2L_1609518_SNP [dm6]	A	G	2.393e^-4	0.974	SYNONYMOUS_CODING CG31935	TF binding site mE1_TFBS_cad
3R	20549643	3R_20549643_SNP [dm3] 3R_24723921_SNP [dm6]	T	C	2.409e^-4	0.974	DOWNSTREAM snoRNA:Me18S-C1280 INTRON tok
X	3337903	X_3337903_SNP [dm3] X_3443870_SNP [dm6]	G	A	2.413e^-4	0.974	INTRON CR44999 & 1 other
3L	14259817	3L_14259817_SNP [dm3] 3L_14266717_SNP [dm6]	A	T	2.420e^-4	0.974	INTERGENIC
2R	11902196	2R_11902196_SNP [dm3] 2R_16014691_SNP [dm6]	C	T	2.425e^-4	0.974	SYNONYMOUS_CODING Prosbeta1 UPSTREAM Rrp42 DOWNSTREAM CG8389	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	2.425e^-4	0.974	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19452240	3R_19452240_SNP [dm3] 3R_23626518_SNP [dm6]	C	A	2.433e^-4	0.974	INTRON CG31145	TF binding site mE1_TFBS_chinmo
X	9284784	X_9284784_SNP [dm3] X_9390751_SNP [dm6]	A	G	2.433e^-4	0.974	INTRON mgl
3L	12058689	3L_12058689_SNP [dm3] 3L_12065589_SNP [dm6]	G	A	2.437e^-4	0.974	UPSTREAM rols INTERGENIC
2R	3429018	2R_3429018_SNP [dm3] 2R_7541513_SNP [dm6]	C	A	2.438e^-4	0.974	INTRON Corin
2R	3429218	2R_3429218_SNP [dm3] 2R_7541713_SNP [dm6]	C	T	2.438e^-4	0.974	INTRON Corin
2R	3429763	2R_3429763_SNP [dm3] 2R_7542258_SNP [dm6]	G	A	2.438e^-4	0.974	INTRON Corin
2R	3431865	2R_3431865_SNP [dm3] 2R_7544360_SNP [dm6]	T	A	2.438e^-4	0.974	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3433484	2R_3433484_SNP [dm3] 2R_7545979_SNP [dm6]	T	C	2.438e^-4	0.974	START_GAINED Corin UTR_5_PRIME Corin INTRON Corin
X	13700264	X_13700264_SNP [dm3] X_13806231_SNP [dm6]	T	C	2.440e^-4	0.974	INTRON inaE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12926797	2L_12926797_SNP [dm3] 2L_12926797_SNP [dm6]	C	G	2.449e^-4	0.974	SYNONYMOUS_CODING ACXE
2L	20596136	2L_20596136_SNP [dm3] 2L_20596136_SNP [dm6]	A	T	2.479e^-4	0.974	INTRON CR44909
X	555398	X_555398_SNP [dm3] X_661365_SNP [dm6]	C	G	2.480e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1203424	2L_1203424_SNP [dm3] 2L_1203424_SNP [dm6]	A	G	2.482e^-4	0.974	UPSTREAM CG14342 INTERGENIC
3L	14259795	3L_14259795_SNP [dm3] 3L_14266695_SNP [dm6]	A	T	2.489e^-4	0.974	INTERGENIC
3L	14259814	3L_14259814_SNP [dm3] 3L_14266714_SNP [dm6]	A	G	2.498e^-4	0.974	INTERGENIC
2R	12131839	2R_12131839_SNP [dm3] 2R_16244334_SNP [dm6]	A	G	2.498e^-4	0.974	INTRON CngA	TF binding site mE1_TFBS_inv
2R	10232688	2R_10232688_INS [dm3] 2R_14345183_INS [dm6]	A	AC	2.498e^-4	0.974	INTRON Shroom
2R	3431923	2R_3431923_SNP [dm3] 2R_7544418_SNP [dm6]	A	C	2.507e^-4	0.974	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16439506	3L_16439506_SNP [dm3] 3L_16446406_SNP [dm6]	G	C	2.514e^-4	0.974	INTRON CG33158 & 1 other
3R	26898199	3R_26898199_SNP [dm3] 3R_31072477_SNP [dm6]	T	A	2.518e^-4	0.974	INTRON Sox100B
2R	19618799	2R_19618799_SNP [dm3] 2R_23731276_SNP [dm6]	G	T	2.528e^-4	0.974	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	18978643	3R_18978643_SNP [dm3] 3R_23152921_SNP [dm6]	C	T	2.530e^-4	0.974	UTR_3_PRIME unk DOWNSTREAM unk
2L	6283395	2L_6283395_SNP [dm3] 2L_6283395_SNP [dm6]	G	T	2.545e^-4	0.974	INTRON Ddr
2R	16268067	2R_16268067_SNP [dm3] 2R_20380562_SNP [dm6]	G	A	2.546e^-4	0.974	INTERGENIC
3R	10460096	3R_10460096_SNP [dm3] 3R_14634374_SNP [dm6]	A	C	2.561e^-4	0.974	INTRON CG7886 & 1 other	TF binding site mE1_TFBS_inv
3R	16180083	3R_16180083_SNP [dm3] 3R_20354361_SNP [dm6]	T	C	2.563e^-4	0.974	INTERGENIC
X	4066480	X_4066480_SNP [dm3] X_4172447_SNP [dm6]	T	C	2.566e^-4	0.974	INTRON Fas2
X	3519737	X_3519737_SNP [dm3] X_3625704_SNP [dm6]	G	A	2.567e^-4	0.974	INTRON AstA-R1
2L	5255326	2L_5255326_SNP [dm3] 2L_5255326_SNP [dm6]	T	C	2.571e^-4	0.974	INTRON tkv
2R	3432923	2R_3432923_SNP [dm3] 2R_7545418_SNP [dm6]	T	C	2.576e^-4	0.974	UTR_5_PRIME Corin INTRON Corin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18722452	2R_18722452_SNP [dm3] 2R_22834929_SNP [dm6]	T	G	2.578e^-4	0.974	DOWNSTREAM CG30265 INTRON CG12490
2L	9460935	2L_9460935_SNP [dm3] 2L_9460935_SNP [dm6]	T	C	2.586e^-4	0.974	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10446981	2L_10446981_DEL [dm3] 2L_10446981_DEL [dm6]	AATAA	A	2.594e^-4	0.974	UPSTREAM loh INTRON loh
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	2.602e^-4	0.974	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	9544935	3L_9544935_SNP [dm3] 3L_9551835_SNP [dm6]	T	A	2.602e^-4	0.974	INTRON CG42673
3R	6845698	3R_6845698_SNP [dm3] 3R_11019976_SNP [dm6]	C	G	2.621e^-4	0.974	INTRON CG34114
X	573923	X_573923_SNP [dm3] X_679890_SNP [dm6]	A	C	2.637e^-4	0.974	INTERGENIC
3L	5731473	3L_5731473_SNP [dm3] 3L_5738373_SNP [dm6]	T	C	2.640e^-4	0.974	INTRON sif
2L	17304135	2L_17304135_SNP [dm3] 2L_17304135_SNP [dm6]	T	C	2.646e^-4	0.974	INTERGENIC
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	2.646e^-4	0.974	INTERGENIC
2R	20117702	2R_20117702_SNP [dm3] 2R_24230179_SNP [dm6]	A	T	2.651e^-4	0.974	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18410916	2R_18410916_SNP [dm3] 2R_22523411_SNP [dm6]	T	A	2.655e^-4	0.974	INTRON px	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3519561	X_3519561_DEL [dm3] X_3625528_DEL [dm6]	AA	A	2.664e^-4	0.974	INTRON AstA-R1
2L	13055462	2L_13055462_SNP [dm3] 2L_13055462_SNP [dm6]	T	C	2.671e^-4	0.974	INTRON CG9932
2R	3432108	2R_3432108_SNP [dm3] 2R_7544603_SNP [dm6]	C	A	2.672e^-4	0.974	UPSTREAM Corin INTRON Corin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17574709	2R_17574709_SNP [dm3] 2R_21687204_SNP [dm6]	T	C	2.680e^-4	0.974	SYNONYMOUS_CODING Tbp DOWNSTREAM CG30285	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1743492	2L_1743492_SNP [dm3] 2L_1743492_SNP [dm6]	A	C	2.689e^-4	0.974	SYNONYMOUS_CODING CG17646
2R	13903194	2R_13903194_SNP [dm3] 2R_18015689_SNP [dm6]	T	C	2.695e^-4	0.974	INTERGENIC
3R	19649946	3R_19649946_SNP [dm3] 3R_23824224_SNP [dm6]	A	T	2.695e^-4	0.974	INTRON CG34355
2L	3689173	2L_3689173_SNP [dm3] 2L_3689173_SNP [dm6]	A	C	2.696e^-4	0.974	INTRON CG34340
3L	10922052	3L_10922052_SNP [dm3] 3L_10928952_SNP [dm6]	T	C	2.703e^-4	0.974	INTERGENIC
3L	13350345	3L_13350345_SNP [dm3] 3L_13357245_SNP [dm6]	A	G	2.704e^-4	0.974	DOWNSTREAM Nplp2 INTERGENIC
3L	7532104	3L_7532104_SNP [dm3] 3L_7539004_SNP [dm6]	C	T	2.704e^-4	0.974	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3R	21044767	3R_21044767_SNP [dm3] 3R_25219045_SNP [dm6]	C	T	2.715e^-4	0.974	UPSTREAM CG31103 DOWNSTREAM CG31106 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4846391	2L_4846391_SNP [dm3] 2L_4846391_SNP [dm6]	A	G	2.719e^-4	0.974	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	5866041	3L_5866041_SNP [dm3] 3L_5872941_SNP [dm6]	G	A	2.719e^-4	0.974	NON_SYNONYMOUS_CODING CG5568 UPSTREAM CG18586	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19663848	2R_19663848_SNP [dm3] 2R_23776325_SNP [dm6]	T	G	2.726e^-4	0.974	INTRON CG9850
3L	17264218	3L_17264218_SNP [dm3] 3L_17271118_SNP [dm6]	C	T	2.735e^-4	0.974	INTERGENIC
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	2.743e^-4	0.974	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1560977	3L_1560977_SNP [dm3] 3L_1560977_SNP [dm6]	G	A	2.744e^-4	0.974	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3R	26429714	3R_26429714_SNP [dm3] 3R_30603992_SNP [dm6]	C	A	2.748e^-4	0.974	UTR_3_PRIME CG31021 UPSTREAM PH4alphaNE3
3R	17154780	3R_17154780_SNP [dm3] 3R_21329058_SNP [dm6]	G	C	2.754e^-4	0.974	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	2.759e^-4	0.974	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	672544	X_672544_SNP [dm3] X_778511_SNP [dm6]	T	G	2.787e^-4	0.974	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	3007835	3L_3007835_SNP [dm3] 3L_3007835_SNP [dm6]	C	T	2.789e^-4	0.974	INTRON FMRFaR
X	13700265	X_13700265_SNP [dm3] X_13806232_SNP [dm6]	G	A	2.794e^-4	0.974	INTRON inaE	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15680094	3R_15680094_SNP [dm3] 3R_19854372_SNP [dm6]	T	A	2.795e^-4	0.974	UTR_3_PRIME CG4662 & 1 other DOWNSTREAM CG4662	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	17990266	X_17990266_SNP [dm3] X_18096233_SNP [dm6]	T	C	2.801e^-4	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna
2L	12859178	2L_12859178_SNP [dm3] 2L_12859178_SNP [dm6]	A	T	2.804e^-4	0.974	INTERGENIC
3R	15138918	3R_15138918_SNP [dm3] 3R_19313196_SNP [dm6]	G	A	2.817e^-4	0.974	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5731768	3L_5731768_SNP [dm3] 3L_5738668_SNP [dm6]	G	A	2.822e^-4	0.974	SYNONYMOUS_CODING sif
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	2.840e^-4	0.974	INTRON TyrR
2L	2287066	2L_2287066_SNP [dm3] 2L_2287066_SNP [dm6]	G	T	2.841e^-4	0.974	UTR_3_PRIME CG42658 UPSTREAM CG31681
3L	12175360	3L_12175360_SNP [dm3] 3L_12182260_SNP [dm6]	C	T	2.843e^-4	0.974	SYNONYMOUS_CODING CAH2
3R	13583390	3R_13583390_SNP [dm3] 3R_17757668_SNP [dm6]	G	A	2.844e^-4	0.974	START_GAINED TyrR UTR_5_PRIME TyrR	TF binding site mE1_TFBS_chinmo
2R	9692780	2R_9692780_SNP [dm3] 2R_13805275_SNP [dm6]	T	A	2.846e^-4	0.974	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
X	8093762	X_8093762_INS [dm3] X_8199729_INS [dm6]	C	CTTGAC	2.855e^-4	0.974	INTRON sdt
3R	26494801	3R_26494801_SNP [dm3] 3R_30669079_SNP [dm6]	T	C	2.865e^-4	0.974	INTERGENIC
3L	16983298	3L_16983298_INS [dm3] 3L_16990198_INS [dm6]	A	AG	2.866e^-4	0.974	INTRON Exn
2R	17480384	2R_17480384_SNP [dm3] 2R_21592879_SNP [dm6]	T	A	2.873e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15128327	X_15128327_SNP [dm3] X_15234294_SNP [dm6]	G	C	2.875e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12930034	2L_12930034_DEL [dm3] 2L_12930034_DEL [dm6]	CC	C	2.883e^-4	0.974	DOWNSTREAM ACXE INTERGENIC
2R	18662288	2R_18662288_SNP [dm3] 2R_22774783_SNP [dm6]	G	T	2.890e^-4	0.974	INTRON CG42260
3L	12864561	3L_12864561_SNP [dm3] 3L_12871461_SNP [dm6]	G	A	2.890e^-4	0.974	INTERGENIC
X	12502575	X_12502575_SNP [dm3] X_12608542_SNP [dm6]	A	T	2.891e^-4	0.974	DOWNSTREAM Sec16 INTRON Sec16	TF binding site mE1_TFBS_chinmo
3L	15509138	3L_15509138_SNP [dm3] 3L_15516038_SNP [dm6]	T	A	2.892e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	10219786	2L_10219786_SNP [dm3] 2L_10219786_SNP [dm6]	A	T	2.904e^-4	0.974	INTRON Npc1a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
2R	15480926	2R_15480926_SNP [dm3] 2R_19593421_SNP [dm6]	G	C	2.904e^-4	0.974	UPSTREAM CG16716 INTRON sm
3L	13531246	3L_13531246_SNP [dm3] 3L_13538146_SNP [dm6]	C	T	2.930e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13902465	2R_13902465_SNP [dm3] 2R_18014960_SNP [dm6]	C	G	2.942e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	11071121	2R_11071121_SNP [dm3] 2R_15183616_SNP [dm6]	A	T	2.943e^-4	0.974	INTRON igl
2R	11071122	2R_11071122_DEL [dm3] 2R_15183617_DEL [dm6]	TGTGTA	T	2.943e^-4	0.974	INTRON igl
2R	12675078	2R_12675078_SNP [dm3] 2R_16787573_SNP [dm6]	C	T	2.946e^-4	0.974	INTRON CG5522
2R	5230378	2R_5230378_SNP [dm3] 2R_9342873_SNP [dm6]	A	G	2.947e^-4	0.974	INTRON CG13954 & 1 other
3L	1256303	3L_1256303_SNP [dm3] 3L_1256303_SNP [dm6]	T	C	2.948e^-4	0.974	UPSTREAM CG9134 DOWNSTREAM CG9130 & 1 other INTERGENIC
3L	15509105	3L_15509105_SNP [dm3] 3L_15516005_SNP [dm6]	T	G	2.949e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	23731446	3R_23731446_SNP [dm3] 3R_27905724_SNP [dm6]	A	C	2.962e^-4	0.974	START_GAINED CG34353 UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	17579709	2R_17579709_SNP [dm3] 2R_21692204_SNP [dm6]	T	A	2.968e^-4	0.974	DOWNSTREAM CngB INTRON Ppcdc & 1 other	TF binding site mE1_TFBS_cad
3L	11574599	3L_11574599_SNP [dm3] 3L_11581499_SNP [dm6]	T	C	2.970e^-4	0.974	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	17975882	2R_17975882_SNP [dm3] 2R_22088377_SNP [dm6]	C	G	2.992e^-4	0.974	UPSTREAM CG13502 INTRON CG13502
3L	12376010	3L_12376010_SNP [dm3] 3L_12382910_SNP [dm6]	G	A	2.998e^-4	0.974	INTRON Ncc69
3L	8974329	3L_8974329_DEL [dm3] 3L_8981229_DEL [dm6]	TTGTAT	T	2.998e^-4	0.974	UPSTREAM CG13314 DOWNSTREAM Galk INTERGENIC
2R	4139873	2R_4139873_SNP [dm3] 2R_8252368_SNP [dm6]	G	C	3.000e^-4	0.974	INTERGENIC
X	15257930	X_15257930_SNP [dm3] X_15363897_SNP [dm6]	G	A	3.001e^-4	0.974	INTRON acj6
2L	8040303	2L_8040303_SNP [dm3] 2L_8040303_SNP [dm6]	T	C	3.016e^-4	0.974	UTR_3_PRIME Cka UPSTREAM CG7367 & 1 other
X	4066481	X_4066481_SNP [dm3] X_4172448_SNP [dm6]	T	C	3.019e^-4	0.974	INTRON Fas2
3L	10334569	3L_10334569_SNP [dm3] 3L_10341469_SNP [dm6]	C	T	3.037e^-4	0.974	INTERGENIC
3R	8383056	3R_8383056_SNP [dm3] 3R_12557334_SNP [dm6]	G	A	3.040e^-4	0.974	INTRON Octbeta2R
3R	15740063	3R_15740063_SNP [dm3] 3R_19914341_SNP [dm6]	G	A	3.041e^-4	0.974	UTR_3_PRIME CG42508 DOWNSTREAM Xport & 2 others
2R	13894684	2R_13894684_SNP [dm3] 2R_18007179_SNP [dm6]	A	T	3.054e^-4	0.974	UTR_5_PRIME dpr13
2R	13610881	2R_13610881_SNP [dm3] 2R_17723376_SNP [dm6]	G	A	3.059e^-4	0.974	UTR_5_PRIME CG10933 UTR_3_PRIME CG10934	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14442150	3L_14442150_DEL [dm3] 3L_14449050_DEL [dm6]	TGT	T	3.061e^-4	0.974	UPSTREAM bbg INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	10734320	X_10734320_SNP [dm3] X_10840287_SNP [dm6]	G	A	3.062e^-4	0.974	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
3L	7697407	3L_7697407_INS [dm3] 3L_7704307_INS [dm6]	T	TT	3.076e^-4	0.974	DOWNSTREAM Ank2 INTRON CG32373 & 1 other
2L	1457015	2L_1457015_SNP [dm3] 2L_1457015_SNP [dm6]	A	T	3.094e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8091462	X_8091462_SNP [dm3] X_8197429_SNP [dm6]	T	C	3.099e^-4	0.974	INTRON sdt
X	4855840	X_4855840_SNP [dm3] X_4961807_SNP [dm6]	C	T	3.101e^-4	0.974	UPSTREAM SIP3 INTRON CR44833
3R	13570878	3R_13570878_SNP [dm3] 3R_17745156_SNP [dm6]	T	C	3.121e^-4	0.974	NON_SYNONYMOUS_CODING TyrRII	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	3.124e^-4	0.974	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
2L	12235421	2L_12235421_SNP [dm3] 2L_12235421_SNP [dm6]	G	T	3.125e^-4	0.974	INTRON aret
3R	8383583	3R_8383583_SNP [dm3] 3R_12557861_SNP [dm6]	G	A	3.132e^-4	0.974	INTRON Octbeta2R
2R	15993988	2R_15993988_SNP [dm3] 2R_20106483_SNP [dm6]	C	T	3.140e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5549315	3L_5549315_INS [dm3] 3L_5556215_INS [dm6]	T	TAGAGTTGTT	3.148e^-4	0.974	INTERGENIC
X	569121	X_569121_DEL [dm3] X_675088_DEL [dm6]	GGGA	G	3.162e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15509158	3L_15509158_SNP [dm3] 3L_15516058_SNP [dm6]	G	T	3.169e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	17482984	2R_17482984_SNP [dm3] 2R_21595479_SNP [dm6]	T	A	3.171e^-4	0.974	INTERGENIC
3L	10334554	3L_10334554_DEL [dm3] 3L_10341454_DEL [dm6]	GATG	G	3.177e^-4	0.974	INTERGENIC
2L	9417946	2L_9417946_SNP [dm3] 2L_9417946_SNP [dm6]	G	C	3.184e^-4	0.974	INTRON Mco1
2R	6567875	2R_6567875_SNP [dm3] 2R_10680370_SNP [dm6]	C	A	3.184e^-4	0.974	INTRON stan	TF binding site mE1_TFBS_Trl
X	6111645	X_6111645_SNP [dm3] X_6217612_SNP [dm6]	A	C	3.199e^-4	0.974	NON_SYNONYMOUS_CODING Btd
2L	16942912	2L_16942912_SNP [dm3] 2L_16942912_SNP [dm6]	G	T	3.203e^-4	0.974	INTERGENIC
3L	10334531	3L_10334531_SNP [dm3] 3L_10341431_SNP [dm6]	C	A	3.203e^-4	0.974	INTERGENIC
3R	15164351	3R_15164351_SNP [dm3] 3R_19338629_SNP [dm6]	A	T	3.222e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4349557	2L_4349557_SNP [dm3] 2L_4349557_SNP [dm6]	G	A	3.226e^-4	0.974	DOWNSTREAM CR44698 EXON CR44699	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15311653	3R_15311653_SNP [dm3] 3R_19485931_SNP [dm6]	A	T	3.226e^-4	0.974	SYNONYMOUS_CODING Dys
2L	9463504	2L_9463504_SNP [dm3] 2L_9463504_SNP [dm6]	A	C	3.232e^-4	0.974	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	15999712	X_15999712_DEL [dm3] X_16105679_DEL [dm6]	TT	T	3.236e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14574253	3L_14574253_SNP [dm3] 3L_14581153_SNP [dm6]	A	C	3.241e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	4431399	2R_4431399_SNP [dm3] 2R_8543894_SNP [dm6]	T	G	3.259e^-4	0.974	UPSTREAM CR44279 INTERGENIC
3L	12222972	3L_12222972_DEL [dm3] 3L_12229872_DEL [dm6]	TT	T	3.261e^-4	0.974	INTRON app
2L	1760104	2L_1760104_SNP [dm3] 2L_1760104_SNP [dm6]	C	A	3.274e^-4	0.974	INTERGENIC
3L	10302489	3L_10302489_SNP [dm3] 3L_10309389_SNP [dm6]	T	C	3.274e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4591881	2L_4591881_SNP [dm3] 2L_4591881_SNP [dm6]	C	A	3.277e^-4	0.974	UTR_5_PRIME dp INTRON dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15261587	3L_15261587_SNP [dm3] 3L_15268487_SNP [dm6]	A	T	3.280e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5805181	2L_5805181_SNP [dm3] 2L_5805181_SNP [dm6]	G	T	3.280e^-4	0.974	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5593368	2L_5593368_SNP [dm3] 2L_5593368_SNP [dm6]	T	C	3.285e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12810773	3L_12810773_SNP [dm3] 3L_12817673_SNP [dm6]	G	A	3.291e^-4	0.974	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17538210	X_17538210_SNP [dm3] X_17644177_SNP [dm6]	C	T	3.295e^-4	0.974	SPLICE_SITE_REGION RhoGAPp190 SYNONYMOUS_CODING RhoGAPp190 INTRON RhoGAPp190
2L	13846924	2L_13846924_SNP [dm3] 2L_13846924_SNP [dm6]	A	G	3.307e^-4	0.974	INTRON CenG1A & 1 other
X	3822303	X_3822303_SNP [dm3] X_3928270_SNP [dm6]	A	T	3.312e^-4	0.974	INTRON CG42541
2R	18665698	2R_18665698_SNP [dm3] 2R_22778193_SNP [dm6]	G	A	3.316e^-4	0.974	INTRON CG42260
2R	17921703	2R_17921703_DEL [dm3] 2R_22034198_DEL [dm6]	GG	G	3.319e^-4	0.974	UPSTREAM CG9308 INTRON CG34370
2L	15418032	2L_15418032_SNP [dm3] 2L_15418032_SNP [dm6]	C	T	3.324e^-4	0.974	INTRON CG44869
3R	20740418	3R_20740418_SNP [dm3] 3R_24914696_SNP [dm6]	G	A	3.326e^-4	0.974	SYNONYMOUS_CODING PIG-S UPSTREAM tRNA:CR31382 DOWNSTREAM tRNA:CR31416
3R	10460269	3R_10460269_SNP [dm3] 3R_14634547_SNP [dm6]	T	A	3.328e^-4	0.974	INTRON CG7886 & 1 other	TF binding site mE1_TFBS_inv
X	1797588	X_1797588_SNP [dm3] X_1903555_SNP [dm6]	C	T	3.343e^-4	0.974	UPSTREAM CG32801 DOWNSTREAM Edem1 EXON CR43864	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8700452	2L_8700452_SNP [dm3] 2L_8700452_SNP [dm6]	G	T	3.347e^-4	0.974	UPSTREAM Hnf4 INTRON Hnf4
2L	4417109	2L_4417109_SNP [dm3] 2L_4417109_SNP [dm6]	T	C	3.350e^-4	0.974	INTRON CG15431	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10061032	X_10061032_SNP [dm3] X_10166999_SNP [dm6]	A	G	3.351e^-4	0.974	INTRON CR44894 & 1 other
3R	26858398	3R_26858398_SNP [dm3] 3R_31032676_SNP [dm6]	T	A	3.351e^-4	0.974	INTERGENIC
X	674766	X_674766_SNP [dm3] X_780733_SNP [dm6]	T	A	3.353e^-4	0.974	INTRON fz3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13917719	2R_13917719_SNP [dm3] 2R_18030214_SNP [dm6]	A	T	3.354e^-4	0.974	INTERGENIC
3L	9890985	3L_9890985_SNP [dm3] 3L_9897885_SNP [dm6]	T	G	3.357e^-4	0.974	UPSTREAM nudE INTRON CG6707	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	3.358e^-4	0.974	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
2L	9460394	2L_9460394_SNP [dm3] 2L_9460394_SNP [dm6]	T	A	3.378e^-4	0.974	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7296150	2R_7296150_SNP [dm3] 2R_11408645_SNP [dm6]	C	A	3.378e^-4	0.974	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
2L	1957933	2L_1957933_SNP [dm3] 2L_1957933_SNP [dm6]	A	T	3.384e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	9416026	2L_9416026_SNP [dm3] 2L_9416026_SNP [dm6]	T	G	3.389e^-4	0.974	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12484065	2L_12484065_DEL [dm3] 2L_12484065_DEL [dm6]	TT	T	3.398e^-4	0.974	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	14907247	3R_14907247_SNP [dm3] 3R_19081525_SNP [dm6]	A	G	3.412e^-4	0.974	INTRON cdi
X	3519742	X_3519742_INS [dm3] X_3625709_INS [dm6]	G	GC	3.413e^-4	0.974	INTRON AstA-R1
X	3519745	X_3519745_INS [dm3] X_3625712_INS [dm6]	C	CTG	3.413e^-4	0.974	INTRON AstA-R1
2R	13383088	2R_13383088_SNP [dm3] 2R_17495583_SNP [dm6]	C	A	3.419e^-4	0.974	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
3L	15275336	3L_15275336_SNP [dm3] 3L_15282236_SNP [dm6]	A	T	3.431e^-4	0.974	INTERGENIC
2L	16863739	2L_16863739_SNP [dm3] 2L_16863739_SNP [dm6]	T	A	3.434e^-4	0.974	INTERGENIC
3L	18616301	3L_18616301_SNP [dm3] 3L_18623201_SNP [dm6]	A	G	3.437e^-4	0.974	SYNONYMOUS_CODING bora	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	17731640	3L_17731640_SNP [dm3] 3L_17738540_SNP [dm6]	A	G	3.439e^-4	0.974	INTRON Ccn
X	14596405	X_14596405_SNP [dm3] X_14702372_SNP [dm6]	G	C	3.442e^-4	0.974	SYNONYMOUS_CODING CG43088 INTRON NetB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21877962	3L_21877962_SNP [dm3] 3L_21884862_SNP [dm6]	G	C	3.453e^-4	0.974	INTRON mub EXON CR43878
3R	25417515	3R_25417515_SNP [dm3] 3R_29591793_SNP [dm6]	A	T	3.457e^-4	0.974	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
X	15999633	X_15999633_SNP [dm3] X_16105600_SNP [dm6]	A	T	3.457e^-4	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	17130926	3L_17130926_SNP [dm3] 3L_17137826_SNP [dm6]	G	C	3.464e^-4	0.974	INTRON Rbp6
X	569101	X_569101_SNP [dm3] X_675068_SNP [dm6]	C	T	3.473e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7211619	2R_7211619_SNP [dm3] 2R_11324114_SNP [dm6]	C	A	3.483e^-4	0.974	UPSTREAM sha INTERGENIC
2L	21280615	2L_21280615_SNP [dm3] 2L_21280615_SNP [dm6]	C	T	3.488e^-4	0.974	INTRON CG8671	TF binding site mE1_TFBS_inv
3R	19589188	3R_19589188_SNP [dm3] 3R_23763466_SNP [dm6]	C	A	3.493e^-4	0.974	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	4185889	3L_4185889_SNP [dm3] 3L_4185889_SNP [dm6]	T	A	3.498e^-4	0.974	DOWNSTREAM VhaM9.7-c INTRON CG18675 & 1 other
3L	12390193	3L_12390193_SNP [dm3] 3L_12397093_SNP [dm6]	G	A	3.536e^-4	0.974	NON_SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	3.536e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	15164353	3R_15164353_SNP [dm3] 3R_19338631_SNP [dm6]	G	A	3.537e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12489325	2L_12489325_SNP [dm3] 2L_12489325_SNP [dm6]	G	C	3.540e^-4	0.974	INTRON bun	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6132514	2L_6132514_SNP [dm3] 2L_6132514_SNP [dm6]	T	C	3.547e^-4	0.974	DOWNSTREAM CR45719 & 1 other INTERGENIC
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	3.557e^-4	0.974	INTRON GABA-B-R1
2R	13394118	2R_13394118_SNP [dm3] 2R_17506613_SNP [dm6]	A	G	3.566e^-4	0.974	UTR_3_PRIME CG43164 INTRON CG43164
3L	11574821	3L_11574821_SNP [dm3] 3L_11581721_SNP [dm6]	T	C	3.568e^-4	0.974	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	20718933	2R_20718933_SNP [dm3] 2R_24831410_SNP [dm6]	G	A	3.597e^-4	0.974	INTRON Dll	TF binding site mE1_TFBS_chinmo
2R	8835221	2R_8835221_SNP [dm3] 2R_12947716_SNP [dm6]	G	T	3.604e^-4	0.974	DOWNSTREAM CG44251 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16713209	3R_16713209_SNP [dm3] 3R_20887487_SNP [dm6]	T	C	3.624e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	3.625e^-4	0.974	INTRON bnl
3L	12090129	3L_12090129_SNP [dm3] 3L_12097029_SNP [dm6]	T	A	3.626e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	12718258	3L_12718258_SNP [dm3] 3L_12725158_SNP [dm6]	G	A	3.626e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16048177	3R_16048177_SNP [dm3] 3R_20222455_SNP [dm6]	C	G	3.636e^-4	0.974	INTRON Nlg4
3L	7284355	3L_7284355_SNP [dm3] 3L_7291255_SNP [dm6]	C	T	3.645e^-4	0.974	INTRON unc-13-4A
2L	7588105	2L_7588105_SNP [dm3] 2L_7588105_SNP [dm6]	A	G	3.647e^-4	0.974	INTERGENIC
3L	19380497	3L_19380497_SNP [dm3] 3L_19387397_SNP [dm6]	C	T	3.648e^-4	0.974	UPSTREAM ms_3_76Ba INTRON CG32206
3L	6506655	3L_6506655_SNP [dm3] 3L_6513555_SNP [dm6]	A	T	3.655e^-4	0.974	INTRON sfl
2L	12931039	2L_12931039_SNP [dm3] 2L_12931039_SNP [dm6]	C	T	3.657e^-4	0.974	UPSTREAM CR44183 INTERGENIC
2R	8243505	2R_8243505_SNP [dm3] 2R_12356000_SNP [dm6]	G	C	3.663e^-4	0.974	NON_SYNONYMOUS_CODING CG30049 DOWNSTREAM CG30047
2R	11318401	2R_11318401_SNP [dm3] 2R_15430896_SNP [dm6]	G	A	3.664e^-4	0.974	INTRON CG43729	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6353753	2L_6353753_SNP [dm3] 2L_6353753_SNP [dm6]	T	G	3.667e^-4	0.974	NON_SYNONYMOUS_CODING ppk7	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18992561	2R_18992561_SNP [dm3] 2R_23105038_SNP [dm6]	C	G	3.672e^-4	0.974	SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA
2R	10200238	2R_10200238_SNP [dm3] 2R_14312733_SNP [dm6]	T	C	3.672e^-4	0.974	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3153385	3R_3153385_SNP [dm3] 3R_7327663_SNP [dm6]	T	A	3.674e^-4	0.974	UPSTREAM CR44336 INTERGENIC
3L	14926445	3L_14926445_SNP [dm3] 3L_14933345_SNP [dm6]	G	A	3.678e^-4	0.974	INTRON DCX-EMAP
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	3.679e^-4	0.974	DOWNSTREAM CG44153 & 1 other INTERGENIC
3L	14056821	3L_14056821_INS [dm3] 3L_14063721_INS [dm6]	C	CA	3.687e^-4	0.974	INTRON CG32138	TF binding site BDTNP1_TFBS_dl
3L	12986181	3L_12986181_SNP [dm3] 3L_12993081_SNP [dm6]	G	C	3.690e^-4	0.974	INTERGENIC
2R	18992552	2R_18992552_SNP [dm3] 2R_23105029_SNP [dm6]	G	A	3.691e^-4	0.974	SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15742468	3R_15742468_SNP [dm3] 3R_19916746_SNP [dm6]	A	T	3.702e^-4	0.974	SYNONYMOUS_CODING CG4465	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17777106	2R_17777106_SNP [dm3] 2R_21889601_SNP [dm6]	G	T	3.704e^-4	0.974	INTRON Fili
X	17322180	X_17322180_SNP [dm3] X_17428147_SNP [dm6]	T	C	3.717e^-4	0.974	SYNONYMOUS_CODING CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_Mad mE1_TFBS_chinmo
X	2812654	X_2812654_SNP [dm3] X_2918621_SNP [dm6]	C	T	3.720e^-4	0.974	INTRON kirre
3R	13985549	3R_13985549_SNP [dm3] 3R_18159827_SNP [dm6]	T	C	3.724e^-4	0.974	DOWNSTREAM CG14315 EXON CR45104
X	17825366	X_17825366_SNP [dm3] X_17931333_SNP [dm6]	A	T	3.731e^-4	0.974	INTRON Sh
2R	18992573	2R_18992573_SNP [dm3] 2R_23105050_SNP [dm6]	C	A	3.733e^-4	0.974	SYNONYMOUS_CODING Gr59d	TF binding site mE1_TFBS_HSA
2L	11243596	2L_11243596_SNP [dm3] 2L_11243596_SNP [dm6]	C	T	3.738e^-4	0.974	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11243721	2L_11243721_SNP [dm3] 2L_11243721_SNP [dm6]	C	T	3.738e^-4	0.974	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5177871	X_5177871_SNP [dm3] X_5283838_SNP [dm6]	A	C	3.744e^-4	0.974	INTERGENIC
3L	7284343	3L_7284343_INS [dm3] 3L_7291243_INS [dm6]	C	CAA	3.747e^-4	0.974	INTRON unc-13-4A
2L	3425214	2L_3425214_SNP [dm3] 2L_3425214_SNP [dm6]	G	C	3.749e^-4	0.974	INTRON pgant2
2L	9464032	2L_9464032_SNP [dm3] 2L_9464032_SNP [dm6]	G	A	3.757e^-4	0.974	UTR_3_PRIME numb DOWNSTREAM numb
2L	8332986	2L_8332986_SNP [dm3] 2L_8332986_SNP [dm6]	A	T	3.776e^-4	0.974	DOWNSTREAM CG14275 INTERGENIC
X	11105090	X_11105090_SNP [dm3] X_11211057_SNP [dm6]	C	G	3.790e^-4	0.974	INTERGENIC
3L	18897932	3L_18897932_INS [dm3] 3L_18904832_INS [dm6]	A	AC	3.795e^-4	0.974	UTR_5_PRIME CSN1b UPSTREAM CG6841	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	12129656	2R_12129656_SNP [dm3] 2R_16242151_SNP [dm6]	T	C	3.796e^-4	0.974	UPSTREAM CG15708 DOWNSTREAM CngA INTERGENIC
3R	4705316	3R_4705316_SNP [dm3] 3R_8879594_SNP [dm6]	A	G	3.800e^-4	0.974	INTRON pyd
2R	11080528	2R_11080528_SNP [dm3] 2R_15193023_SNP [dm6]	G	A	3.800e^-4	0.974	DOWNSTREAM CG43829 INTRON Sfp51E
3R	16770790	3R_16770790_SNP [dm3] 3R_20945068_SNP [dm6]	A	G	3.800e^-4	0.974	INTRON CG31191	TF binding site mE1_TFBS_cad
2R	19164346	2R_19164346_SNP [dm3] 2R_23276823_SNP [dm6]	G	A	3.806e^-4	0.974	INTERGENIC
3L	15509640	3L_15509640_SNP [dm3] 3L_15516540_SNP [dm6]	C	T	3.806e^-4	0.974	UTR_3_PRIME CG13454 DOWNSTREAM mex1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14723347	3L_14723347_SNP [dm3] 3L_14730247_SNP [dm6]	G	A	3.811e^-4	0.974	DOWNSTREAM CG13473 INTRON ome
3L	7303707	3L_7303707_SNP [dm3] 3L_7310607_SNP [dm6]	G	A	3.816e^-4	0.974	INTRON unc-13-4A
2L	3844994	2L_3844994_SNP [dm3] 2L_3844994_SNP [dm6]	G	T	3.818e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	3.819e^-4	0.974	INTRON CG15365
X	663277	X_663277_SNP [dm3] X_769244_SNP [dm6]	C	T	3.820e^-4	0.974	UPSTREAM fz3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11866405	3L_11866405_SNP [dm3] 3L_11873305_SNP [dm6]	T	C	3.822e^-4	0.974	INTRON CG44837
3L	11867256	3L_11867256_SNP [dm3] 3L_11874156_SNP [dm6]	C	T	3.832e^-4	0.974	INTRON CG44837
3R	6911170	3R_6911170_SNP [dm3] 3R_11085448_SNP [dm6]	T	C	3.852e^-4	0.974	EXON CR44940
3L	1251798	3L_1251798_SNP [dm3] 3L_1251798_SNP [dm6]	C	T	3.855e^-4	0.974	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3R	10244945	3R_10244945_SNP [dm3] 3R_14419223_SNP [dm6]	C	T	3.855e^-4	0.974	SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_chinmo
X	15257744	X_15257744_SNP [dm3] X_15363711_SNP [dm6]	A	T	3.874e^-4	0.974	INTRON acj6
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	3.877e^-4	0.974	INTRON bnl
X	17990677	X_17990677_SNP [dm3] X_18096644_SNP [dm6]	T	C	3.879e^-4	0.974	DOWNSTREAM CG7192 INTRON RhoGAP16F	TF binding site mE1_TFBS_sens
3L	8201002	3L_8201002_SNP [dm3] 3L_8207902_SNP [dm6]	G	A	3.880e^-4	0.974	INTERGENIC
3R	13439729	3R_13439729_SNP [dm3] 3R_17614007_SNP [dm6]	C	A	3.885e^-4	0.974	NON_SYNONYMOUS_CODING CG14327 DOWNSTREAM CG34281
X	9792474	X_9792474_SNP [dm3] X_9898441_SNP [dm6]	G	A	3.892e^-4	0.974	INTRON CG15249
3R	4690733	3R_4690733_SNP [dm3] 3R_8865011_SNP [dm6]	A	T	3.894e^-4	0.974	SYNONYMOUS_CODING pyd UPSTREAM pyd
2L	1963481	2L_1963481_SNP [dm3] 2L_1963481_SNP [dm6]	A	G	3.903e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1259299	2L_1259299_SNP [dm3] 2L_1259299_SNP [dm6]	G	T	3.910e^-4	0.974	INTRON robo3	TF binding site mE1_TFBS_Kr
3L	12810770	3L_12810770_SNP [dm3] 3L_12817670_SNP [dm6]	A	G	3.918e^-4	0.974	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21623424	3R_21623424_SNP [dm3] 3R_25797702_SNP [dm6]	T	C	3.920e^-4	0.974	EXON CR43847
3R	6179119	3R_6179119_SNP [dm3] 3R_10353397_SNP [dm6]	A	C	3.923e^-4	0.974	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2R	17146775	2R_17146775_SNP [dm3] 2R_21259270_SNP [dm6]	C	G	3.926e^-4	0.974	INTRON Rgk3
X	523915	X_523915_SNP [dm3] X_629882_SNP [dm6]	A	G	3.927e^-4	0.974	UTR_5_PRIME l_1_1Bi UPSTREAM RpL36	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3794243	2L_3794243_SNP [dm3] 2L_3794243_SNP [dm6]	T	C	3.933e^-4	0.974	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
3L	10392127	3L_10392127_SNP [dm3] 3L_10399027_SNP [dm6]	G	A	3.937e^-4	0.974	INTERGENIC
3L	12090127	3L_12090127_SNP [dm3] 3L_12097027_SNP [dm6]	T	C	3.945e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9015280	2R_9015280_SNP [dm3] 2R_13127775_SNP [dm6]	G	A	3.950e^-4	0.974	DOWNSTREAM CG3955 INTERGENIC
2L	1093784	2L_1093784_SNP [dm3] 2L_1093784_SNP [dm6]	C	A	3.951e^-4	0.974	INTRON CG4629
2L	19843629	2L_19843629_SNP [dm3] 2L_19843629_SNP [dm6]	T	G	3.952e^-4	0.974	INTRON sick
3R	25779794	3R_25779794_SNP [dm3] 3R_29954072_SNP [dm6]	A	G	3.959e^-4	0.974	SYNONYMOUS_CODING TkR99D
3L	15281121	3L_15281121_SNP [dm3] 3L_15288021_SNP [dm6]	G	C	3.966e^-4	0.974	INTERGENIC
3L	17250466	3L_17250466_SNP [dm3] 3L_17257366_SNP [dm6]	C	T	3.972e^-4	0.974	INTRON CR43870
3R	18680991	3R_18680991_DEL [dm3] 3R_22855269_DEL [dm6]	AA	A	3.973e^-4	0.974	INTERGENIC
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	3.978e^-4	0.974	INTRON 5-HT1A
X	10266921	X_10266921_SNP [dm3] X_10372888_SNP [dm6]	T	C	3.987e^-4	0.974	SYNONYMOUS_CODING CG32686 INTRON CG17841
3R	6911234	3R_6911234_DEL [dm3] 3R_11085512_DEL [dm6]	AAAGAGTCTGATAATATTTA...	A	3.994e^-4	0.974	UPSTREAM CR44940 INTERGENIC
3L	10334387	3L_10334387_DEL [dm3] 3L_10341287_DEL [dm6]	AA	A	3.995e^-4	0.974	INTERGENIC
4	459827	4_459827_SNP [dm3] 4_439201_SNP [dm6]	C	T	4.001e^-4	0.974	INTRON lgs
3R	10925248	3R_10925248_SNP [dm3] 3R_15099526_SNP [dm6]	G	A	4.007e^-4	0.974	SYNONYMOUS_CODING CG42788	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	6392737	3R_6392737_SNP [dm3] 3R_10567015_SNP [dm6]	A	T	4.008e^-4	0.974	INTRON hth
2R	16788613	2R_16788613_SNP [dm3] 2R_20901108_SNP [dm6]	G	A	4.021e^-4	0.974	INTRON otp	TF binding site mE1_TFBS_HSA
3R	19844912	3R_19844912_SNP [dm3] 3R_24019190_SNP [dm6]	G	A	4.023e^-4	0.974	INTRON KrT95D
3R	16770793	3R_16770793_SNP [dm3] 3R_20945071_SNP [dm6]	T	A	4.026e^-4	0.974	INTRON CG31191	TF binding site mE1_TFBS_cad
2L	10225451	2L_10225451_SNP [dm3] 2L_10225451_SNP [dm6]	A	G	4.027e^-4	0.974	INTRON CG5708	TF binding site mE1_TFBS_HSA
3L	11047606	3L_11047606_SNP [dm3] 3L_11054506_SNP [dm6]	T	A	4.027e^-4	0.974	INTRON CG7888
3R	22715372	3R_22715372_SNP [dm3] 3R_26889650_SNP [dm6]	A	G	4.032e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	18901519	2L_18901519_SNP [dm3] 2L_18901519_SNP [dm6]	T	C	4.035e^-4	0.974	INTERGENIC
3L	3880076	3L_3880076_SNP [dm3] 3L_3880076_SNP [dm6]	A	G	4.041e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	4.044e^-4	0.974	INTRON bnl
3L	8200816	3L_8200816_SNP [dm3] 3L_8207716_SNP [dm6]	A	G	4.051e^-4	0.974	INTERGENIC
X	17777817	X_17777817_SNP [dm3] X_17883784_SNP [dm6]	C	A	4.056e^-4	0.974	UTR_5_PRIME CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9769453	2L_9769453_SNP [dm3] 2L_9769453_SNP [dm6]	C	G	4.064e^-4	0.974	NON_SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	4.069e^-4	0.974	INTERGENIC
2L	16942941	2L_16942941_SNP [dm3] 2L_16942941_SNP [dm6]	A	G	4.079e^-4	0.974	INTERGENIC
3L	4186271	3L_4186271_SNP [dm3] 3L_4186271_SNP [dm6]	T	C	4.080e^-4	0.974	UTR_3_PRIME VhaM9.7-c INTRON CG18675 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	10198510	2R_10198510_SNP [dm3] 2R_14311005_SNP [dm6]	T	C	4.081e^-4	0.974	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3462121	2R_3462121_DEL [dm3] 2R_7574616_DEL [dm6]	AA	A	4.085e^-4	0.974	INTRON Vps13
2L	4417105	2L_4417105_SNP [dm3] 2L_4417105_SNP [dm6]	T	C	4.091e^-4	0.974	INTRON CG15431	TF binding site mE1_TFBS_chinmo
3R	10499507	3R_10499507_SNP [dm3] 3R_14673785_SNP [dm6]	A	G	4.093e^-4	0.974	INTRON Meltrin	TF binding site BDTNP1_TFBS_twi
2L	1098188	2L_1098188_SNP [dm3] 2L_1098188_SNP [dm6]	T	C	4.098e^-4	0.974	INTRON CG4629
3L	11574965	3L_11574965_SNP [dm3] 3L_11581865_SNP [dm6]	G	C	4.108e^-4	0.974	SYNONYMOUS_CODING CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
X	1787831	X_1787831_SNP [dm3] X_1893798_SNP [dm6]	G	C	4.111e^-4	0.974	INTRON arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15128305	X_15128305_SNP [dm3] X_15234272_SNP [dm6]	T	A	4.156e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13947301	2R_13947301_SNP [dm3] 2R_18059796_SNP [dm6]	C	A	4.162e^-4	0.974	UPSTREAM CR45314 INTERGENIC
3L	15261499	3L_15261499_SNP [dm3] 3L_15268399_SNP [dm6]	C	T	4.163e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	3872746	3L_3872746_SNP [dm3] 3L_3872746_SNP [dm6]	G	A	4.163e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Ubx
3L	14147587	3L_14147587_SNP [dm3] 3L_14154487_SNP [dm6]	T	C	4.166e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17264240	3L_17264240_SNP [dm3] 3L_17271140_SNP [dm6]	C	T	4.179e^-4	0.974	INTERGENIC
3R	5352892	3R_5352892_SNP [dm3] 3R_9527170_SNP [dm6]	A	G	4.181e^-4	0.974	UTR_3_PRIME CG8176
3L	12056631	3L_12056631_SNP [dm3] 3L_12063531_SNP [dm6]	T	C	4.183e^-4	0.974	INTRON rols	TF binding site mE1_TFBS_HSA
2R	17432759	2R_17432759_SNP [dm3] 2R_21545254_SNP [dm6]	C	A	4.201e^-4	0.974	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3523459	2R_3523459_INS [dm3] 2R_7635954_INS [dm6]	A	AA	4.203e^-4	0.974	UPSTREAM CR45131 & 1 other INTRON CG43340
3R	6393429	3R_6393429_SNP [dm3] 3R_10567707_SNP [dm6]	G	C	4.215e^-4	0.974	INTRON hth
2L	8538676	2L_8538676_SNP [dm3] 2L_8538676_SNP [dm6]	G	C	4.215e^-4	0.974	DOWNSTREAM CG17834 INTRON CG17834
X	17654327	X_17654327_SNP [dm3] X_17760294_SNP [dm6]	G	T	4.221e^-4	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	15149934	3R_15149934_SNP [dm3] 3R_19324212_SNP [dm6]	T	A	4.221e^-4	0.974	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5177865	X_5177865_INS [dm3] X_5283832_INS [dm6]	A	ATCT	4.224e^-4	0.974	INTERGENIC
X	5177867	X_5177867_INS [dm3] X_5283834_INS [dm6]	A	ATTTC	4.224e^-4	0.974	INTERGENIC
X	5177870	X_5177870_SNP [dm3] X_5283837_SNP [dm6]	T	A	4.224e^-4	0.974	INTERGENIC
X	5177874	X_5177874_SNP [dm3] X_5283841_SNP [dm6]	T	G	4.224e^-4	0.974	INTERGENIC
X	5177898	X_5177898_SNP [dm3] X_5283865_SNP [dm6]	A	G	4.224e^-4	0.974	INTERGENIC
X	6292185	X_6292185_SNP [dm3] X_6398152_SNP [dm6]	T	C	4.226e^-4	0.974	INTERGENIC
X	3519339	X_3519339_SNP [dm3] X_3625306_SNP [dm6]	G	A	4.239e^-4	0.974	INTRON AstA-R1
3R	15311682	3R_15311682_SNP [dm3] 3R_19485960_SNP [dm6]	C	G	4.242e^-4	0.974	NON_SYNONYMOUS_CODING Dys
3R	15149920	3R_15149920_SNP [dm3] 3R_19324198_SNP [dm6]	A	C	4.243e^-4	0.974	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7944368	2R_7944368_SNP [dm3] 2R_12056863_SNP [dm6]	G	C	4.254e^-4	0.974	DOWNSTREAM CG44314 INTRON Drep-3
2L	14803423	2L_14803423_SNP [dm3] 2L_14803423_SNP [dm6]	G	A	4.263e^-4	0.974	DOWNSTREAM CG33308 INTERGENIC
3R	20740427	3R_20740427_SNP [dm3] 3R_24914705_SNP [dm6]	G	A	4.264e^-4	0.974	SPLICE_SITE_REGION PIG-S UPSTREAM tRNA:CR31382 DOWNSTREAM tRNA:CR31416 INTRON PIG-S
2R	15853255	2R_15853255_SNP [dm3] 2R_19965750_SNP [dm6]	C	T	4.268e^-4	0.974	INTERGENIC
3L	13534128	3L_13534128_SNP [dm3] 3L_13541028_SNP [dm6]	T	C	4.298e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
2L	4847593	2L_4847593_SNP [dm3] 2L_4847593_SNP [dm6]	C	A	4.308e^-4	0.974	UPSTREAM mxt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	15508763	3L_15508763_SNP [dm3] 3L_15515663_SNP [dm6]	A	T	4.308e^-4	0.974	DOWNSTREAM CG13454 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	10185502	2L_10185502_SNP [dm3] 2L_10185502_SNP [dm6]	A	G	4.314e^-4	0.974	INTRON Sur
2L	14803045	2L_14803045_SNP [dm3] 2L_14803045_SNP [dm6]	G	A	4.322e^-4	0.974	NON_SYNONYMOUS_CODING CG33308
2L	13990209	2L_13990209_SNP [dm3] 2L_13990209_SNP [dm6]	T	A	4.324e^-4	0.974	INTRON rk
3R	22143770	3R_22143770_SNP [dm3] 3R_26318048_SNP [dm6]	G	A	4.325e^-4	0.974	UPSTREAM CG33970 INTERGENIC
2R	17210785	2R_17210785_SNP [dm3] 2R_21323280_SNP [dm6]	T	C	4.353e^-4	0.974	UTR_5_PRIME CG30394 UPSTREAM dom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
3L	13534129	3L_13534129_DEL [dm3] 3L_13541029_DEL [dm6]	TTT	T	4.354e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
3L	12986173	3L_12986173_SNP [dm3] 3L_12993073_SNP [dm6]	G	T	4.355e^-4	0.974	INTERGENIC
X	3519292	X_3519292_SNP [dm3] X_3625259_SNP [dm6]	T	C	4.360e^-4	0.974	INTRON AstA-R1
3R	3171928	3R_3171928_SNP [dm3] 3R_7346206_SNP [dm6]	C	T	4.363e^-4	0.974	SYNONYMOUS_CODING CG31496 UPSTREAM nxf4	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4176992	2R_4176992_SNP [dm3] 2R_8289487_SNP [dm6]	C	T	4.365e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	4846926	2L_4846926_SNP [dm3] 2L_4846926_SNP [dm6]	A	G	4.368e^-4	0.974	UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14912746	2R_14912746_SNP [dm3] 2R_19025241_SNP [dm6]	A	T	4.371e^-4	0.974	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4702325	2R_4702325_SNP [dm3] 2R_8814820_SNP [dm6]	G	A	4.371e^-4	0.974	INTRON sns
2R	10872237	2R_10872237_SNP [dm3] 2R_14984732_SNP [dm6]	T	C	4.385e^-4	0.974	UPSTREAM tRNA:CR30241 INTRON pcs	TF binding site BDTNP1_TFBS_dl
2L	5805167	2L_5805167_SNP [dm3] 2L_5805167_SNP [dm6]	G	A	4.387e^-4	0.974	UPSTREAM CG11034 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	19195166	2R_19195166_DEL [dm3] 2R_23307643_DEL [dm6]	AG	A	4.391e^-4	0.974	INTERGENIC
2L	3082190	2L_3082190_SNP [dm3] 2L_3082190_SNP [dm6]	A	G	4.408e^-4	0.974	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7126771	2L_7126771_SNP [dm3] 2L_7126771_SNP [dm6]	C	T	4.412e^-4	0.974	INTRON Pvf3
X	6939921	X_6939921_SNP [dm3] X_7045888_SNP [dm6]	C	G	4.418e^-4	0.974	INTRON CG12541	TF binding site BDTNP1_TFBS_dl
3R	18484026	3R_18484026_SNP [dm3] 3R_22658304_SNP [dm6]	T	C	4.421e^-4	0.974	SYNONYMOUS_CODING CG45058 UTR_5_PRIME CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16109318	2R_16109318_SNP [dm3] 2R_20221813_SNP [dm6]	T	G	4.425e^-4	0.974	EXON CR45423
3R	26752159	3R_26752159_SNP [dm3] 3R_30926437_SNP [dm6]	G	T	4.429e^-4	0.974	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	11105062	X_11105062_SNP [dm3] X_11211029_SNP [dm6]	C	T	4.430e^-4	0.974	INTERGENIC
2L	4417107	2L_4417107_SNP [dm3] 2L_4417107_SNP [dm6]	T	A	4.435e^-4	0.974	INTRON CG15431	TF binding site mE1_TFBS_chinmo
X	4291866	X_4291866_SNP [dm3] X_4397833_SNP [dm6]	G	C	4.436e^-4	0.974	INTRON CR32773
2R	14912761	2R_14912761_SNP [dm3] 2R_19025256_SNP [dm6]	A	G	4.441e^-4	0.974	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	11077522	3R_11077522_DEL [dm3] 3R_15251800_DEL [dm6]	TTCT	T	4.451e^-4	0.974	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9130288	2L_9130288_SNP [dm3] 2L_9130288_SNP [dm6]	T	G	4.462e^-4	0.974	INTRON CG32982	TF binding site BDTNP1_TFBS_twi
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	4.463e^-4	0.974	UPSTREAM PH4alphaNE3 INTRON CG31021
3L	14016130	3L_14016130_SNP [dm3] 3L_14023030_SNP [dm6]	G	T	4.466e^-4	0.974	SYNONYMOUS_CODING ptip
2L	16130997	2L_16130997_SNP [dm3] 2L_16130997_SNP [dm6]	A	T	4.487e^-4	0.974	INTERGENIC
2L	16130998	2L_16130998_SNP [dm3] 2L_16130998_SNP [dm6]	G	T	4.487e^-4	0.974	INTERGENIC
2L	16131011	2L_16131011_SNP [dm3] 2L_16131011_SNP [dm6]	A	C	4.487e^-4	0.974	INTERGENIC
X	14237476	X_14237476_INS [dm3] X_14343443_INS [dm6]	C	CTGTTGTAATTTATAATTTA...	4.487e^-4	0.974	INTRON dpr8
2L	11079136	2L_11079136_SNP [dm3] 2L_11079136_SNP [dm6]	A	T	4.495e^-4	0.974	INTRON AstC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	20761406	3R_20761406_SNP [dm3] 3R_24935684_SNP [dm6]	C	T	4.507e^-4	0.974	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1624095	3L_1624095_SNP [dm3] 3L_1624095_SNP [dm6]	A	G	4.510e^-4	0.974	SYNONYMOUS_CODING GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18385437	3L_18385437_SNP [dm3] 3L_18392337_SNP [dm6]	A	G	4.523e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	15837469	3L_15837469_SNP [dm3] 3L_15844369_SNP [dm6]	A	T	4.529e^-4	0.974	UPSTREAM mir-263b & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	22621860	2L_22621860_SNP [dm3] 2L_22729128_SNP [dm6]	A	T	4.536e^-4	0.974	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	22621904	2L_22621904_SNP [dm3] 2L_22729172_SNP [dm6]	G	T	4.536e^-4	0.974	INTRON CG40006	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16865188	2L_16865188_SNP [dm3] 2L_16865188_SNP [dm6]	G	T	4.541e^-4	0.974	INTERGENIC
2L	13982820	2L_13982820_SNP [dm3] 2L_13982820_SNP [dm6]	T	A	4.542e^-4	0.974	UTR_3_PRIME NimC2 & 1 other
2R	9015203	2R_9015203_SNP [dm3] 2R_13127698_SNP [dm6]	G	T	4.547e^-4	0.974	DOWNSTREAM CG3955 INTERGENIC
3L	5422806	3L_5422806_SNP [dm3] 3L_5429706_SNP [dm6]	C	T	4.550e^-4	0.974	INTRON CG34391
2R	17366693	2R_17366693_SNP [dm3] 2R_21479188_SNP [dm6]	T	C	4.551e^-4	0.974	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	5805475	2L_5805475_SNP [dm3] 2L_5805475_SNP [dm6]	C	T	4.553e^-4	0.974	UTR_5_PRIME CG11034	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	8166866	2R_8166866_SNP [dm3] 2R_12279361_SNP [dm6]	G	T	4.554e^-4	0.974	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
2R	8166903	2R_8166903_SNP [dm3] 2R_12279398_SNP [dm6]	A	G	4.554e^-4	0.974	UPSTREAM CG42700 DOWNSTREAM Cam INTERGENIC
X	16112964	X_16112964_SNP [dm3] X_16218931_SNP [dm6]	A	C	4.560e^-4	0.974	INTERGENIC
X	3822406	X_3822406_SNP [dm3] X_3928373_SNP [dm6]	G	A	4.563e^-4	0.974	INTRON CG42541
3R	4263819	3R_4263819_SNP [dm3] 3R_8438097_SNP [dm6]	G	T	4.570e^-4	0.974	INTRON CG45263
3L	15345758	3L_15345758_SNP [dm3] 3L_15352658_SNP [dm6]	C	T	4.575e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9463981	2L_9463981_SNP [dm3] 2L_9463981_SNP [dm6]	A	G	4.576e^-4	0.974	UTR_3_PRIME numb DOWNSTREAM numb
X	14972864	X_14972864_SNP [dm3] X_15078831_SNP [dm6]	C	G	4.587e^-4	0.974	EXON CR44662
2L	3082191	2L_3082191_SNP [dm3] 2L_3082191_SNP [dm6]	A	T	4.588e^-4	0.974	INTRON toc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9753790	2L_9753790_SNP [dm3] 2L_9753790_SNP [dm6]	G	A	4.590e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3523048	3L_3523048_SNP [dm3] 3L_3523048_SNP [dm6]	T	G	4.597e^-4	0.974	INTRON Eip63E EXON CR45043
X	11105037	X_11105037_DEL [dm3] X_11211004_DEL [dm6]	TTAGTT	G	4.597e^-4	0.974	INTERGENIC
X	11105063	X_11105063_SNP [dm3] X_11211030_SNP [dm6]	A	G	4.597e^-4	0.974	INTERGENIC
3R	21044822	3R_21044822_SNP [dm3] 3R_25219100_SNP [dm6]	C	T	4.598e^-4	0.974	UPSTREAM CG31103 DOWNSTREAM CG31106 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14574335	3L_14574335_SNP [dm3] 3L_14581235_SNP [dm6]	A	T	4.608e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14962318	X_14962318_SNP [dm3] X_15068285_SNP [dm6]	T	A	4.609e^-4	0.974	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
X	5177864	X_5177864_SNP [dm3] X_5283831_SNP [dm6]	C	A	4.615e^-4	0.974	INTERGENIC
3R	15972159	3R_15972159_SNP [dm3] 3R_20146437_SNP [dm6]	G	C	4.616e^-4	0.974	INTERGENIC
3L	12390198	3L_12390198_SNP [dm3] 3L_12397098_SNP [dm6]	G	C	4.622e^-4	0.974	SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4376305	X_4376305_SNP [dm3] X_4482272_SNP [dm6]	T	C	4.627e^-4	0.974	SYNONYMOUS_CODING bi INTRON CR32773
3R	25909873	3R_25909873_SNP [dm3] 3R_30084151_SNP [dm6]	C	A	4.628e^-4	0.974	INTRON sima	TF binding site mE1_TFBS_Trl
2R	20202949	2R_20202949_SNP [dm3] 2R_24315426_SNP [dm6]	T	C	4.630e^-4	0.974	INTERGENIC
X	7641760	X_7641760_SNP [dm3] X_7747727_SNP [dm6]	A	G	4.630e^-4	0.974	INTERGENIC
3L	10143424	3L_10143424_SNP [dm3] 3L_10150324_SNP [dm6]	G	A	4.646e^-4	0.974	INTRON dpr10
2R	7918608	2R_7918608_SNP [dm3] 2R_12031103_SNP [dm6]	C	T	4.647e^-4	0.974	NON_SYNONYMOUS_CODING pds5
3R	22143658	3R_22143658_SNP [dm3] 3R_26317936_SNP [dm6]	T	A	4.650e^-4	0.974	UPSTREAM CG33970 INTERGENIC
2R	10657231	2R_10657231_SNP [dm3] 2R_14769726_SNP [dm6]	G	A	4.654e^-4	0.974	UTR_3_PRIME CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	19380495	3L_19380495_SNP [dm3] 3L_19387395_SNP [dm6]	G	A	4.656e^-4	0.974	UPSTREAM ms_3_76Ba INTRON CG32206
2R	1968982	2R_1968982_SNP [dm3] 2R_6081477_SNP [dm6]	A	G	4.662e^-4	0.974	UPSTREAM CG14590 INTRON Ars2
2L	22118435	2L_22118435_SNP [dm3] 2L_22118435_SNP [dm6]	C	T	4.664e^-4	0.974	INTERGENIC	transposable element FlyBase
3R	17969989	3R_17969989_SNP [dm3] 3R_22144267_SNP [dm6]	C	A	4.675e^-4	0.974	INTRON SKIP
3L	1537934	3L_1537934_SNP [dm3] 3L_1537934_SNP [dm6]	C	T	4.677e^-4	0.974	SYNONYMOUS_CODING CG7852	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11105019	X_11105019_SNP [dm3] X_11210986_SNP [dm6]	T	G	4.680e^-4	0.974	INTERGENIC
2R	15323605	2R_15323605_SNP [dm3] 2R_19436100_SNP [dm6]	T	C	4.683e^-4	0.974	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	4.683e^-4	0.974	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
3L	13533996	3L_13533996_SNP [dm3] 3L_13540896_SNP [dm6]	A	G	4.689e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7954564	2R_7954564_SNP [dm3] 2R_12067059_SNP [dm6]	G	A	4.699e^-4	0.974	INTRON CG8888	TF binding site mE1_TFBS_bab1
3R	4411301	3R_4411301_SNP [dm3] 3R_8585579_SNP [dm6]	A	T	4.699e^-4	0.974	INTRON 5-HT2B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16293613	3R_16293613_DEL [dm3] 3R_20467891_DEL [dm6]	CTCTGGT	GCAAC	4.700e^-4	0.974	INTRON Gfrl
3L	12718246	3L_12718246_SNP [dm3] 3L_12725146_SNP [dm6]	T	G	4.704e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12810644	3L_12810644_SNP [dm3] 3L_12817544_SNP [dm6]	G	T	4.707e^-4	0.974	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA
2L	8344879	2L_8344879_SNP [dm3] 2L_8344879_SNP [dm6]	G	C	4.712e^-4	0.974	DOWNSTREAM CG14273 EXON CR45371	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	8876591	2L_8876591_SNP [dm3] 2L_8876591_SNP [dm6]	T	C	4.713e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	544008	X_544008_SNP [dm3] X_649975_SNP [dm6]	C	T	4.715e^-4	0.974	UTR_3_PRIME Hmt4-20	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16713269	3R_16713269_SNP [dm3] 3R_20887547_SNP [dm6]	T	C	4.715e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3R	19844987	3R_19844987_DEL [dm3] 3R_24019265_DEL [dm6]	CACC	C	4.716e^-4	0.974	INTRON KrT95D
3L	15261332	3L_15261332_SNP [dm3] 3L_15268232_SNP [dm6]	G	C	4.725e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2L	12859181	2L_12859181_DEL [dm3] 2L_12859181_DEL [dm6]	CTTA	C	4.725e^-4	0.974	INTERGENIC
2R	17367352	2R_17367352_SNP [dm3] 2R_21479847_SNP [dm6]	G	A	4.734e^-4	0.974	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16144469	2R_16144469_SNP [dm3] 2R_20256964_SNP [dm6]	C	T	4.734e^-4	0.974	SYNONYMOUS_CODING Ate1 UPSTREAM Hsl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18237340	3L_18237340_SNP [dm3] 3L_18244240_SNP [dm6]	A	G	4.735e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20130472	2L_20130472_SNP [dm3] 2L_20130472_SNP [dm6]	T	C	4.736e^-4	0.974	INTERGENIC
3L	16983323	3L_16983323_SNP [dm3] 3L_16990223_SNP [dm6]	A	G	4.736e^-4	0.974	INTRON Exn
3R	6568982	3R_6568982_SNP [dm3] 3R_10743260_SNP [dm6]	C	A	4.743e^-4	0.974	INTRON TkR86C
3L	13399425	3L_13399425_SNP [dm3] 3L_13406325_SNP [dm6]	C	A	4.756e^-4	0.974	INTERGENIC
2R	13610581	2R_13610581_SNP [dm3] 2R_17723076_SNP [dm6]	T	C	4.758e^-4	0.974	UTR_3_PRIME CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	1144314	2L_1144314_SNP [dm3] 2L_1144314_SNP [dm6]	C	T	4.762e^-4	0.974	INTRON MFS3
2R	17651903	2R_17651903_SNP [dm3] 2R_21764398_SNP [dm6]	A	G	4.766e^-4	0.974	NON_SYNONYMOUS_CODING CG43982 UPSTREAM CR43983 DOWNSTREAM CR43984	TF binding site BDTNP1_TFBS_dl
X	14034223	X_14034223_SNP [dm3] X_14140190_SNP [dm6]	T	C	4.772e^-4	0.974	INTERGENIC
2R	17789158	2R_17789158_SNP [dm3] 2R_21901653_SNP [dm6]	C	T	4.773e^-4	0.974	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	4.782e^-4	0.974	INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	12718270	3L_12718270_INS [dm3] 3L_12725170_INS [dm6]	T	TGT	4.792e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12718274	3L_12718274_MNP [dm3] 3L_12725174_MNP [dm6]	GTA	TAC	4.792e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19015943	X_19015943_SNP [dm3] X_19121910_SNP [dm6]	G	T	4.793e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11835914	3L_11835914_SNP [dm3] 3L_11842814_SNP [dm6]	G	T	4.799e^-4	0.974	INTERGENIC
3L	13292630	3L_13292630_DEL [dm3] 3L_13299530_DEL [dm6]	TT	A	4.802e^-4	0.974	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	19831572	2R_19831572_SNP [dm3] 2R_23944049_SNP [dm6]	T	G	4.808e^-4	0.974	UTR_5_PRIME Galphas INTRON Galphas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	5177888	X_5177888_SNP [dm3] X_5283855_SNP [dm6]	G	T	4.810e^-4	0.974	INTERGENIC
X	19908402	X_19908402_SNP [dm3] X_20014369_SNP [dm6]	G	A	4.813e^-4	0.974	UPSTREAM Dop2R INTRON Dop2R
2R	16109256	2R_16109256_SNP [dm3] 2R_20221751_SNP [dm6]	G	T	4.821e^-4	0.974	INTRON CR45423
3L	12580424	3L_12580424_SNP [dm3] 3L_12587324_SNP [dm6]	A	T	4.824e^-4	0.974	INTRON ara
3R	22143663	3R_22143663_SNP [dm3] 3R_26317941_SNP [dm6]	A	G	4.828e^-4	0.974	UPSTREAM CG33970 INTERGENIC
3L	9846924	3L_9846924_SNP [dm3] 3L_9853824_SNP [dm6]	C	T	4.831e^-4	0.974	INTRON RasGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15261559	3L_15261559_SNP [dm3] 3L_15268459_SNP [dm6]	T	G	4.836e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	20439743	2R_20439743_SNP [dm3] 2R_24552220_SNP [dm6]	C	T	4.837e^-4	0.974	INTRON CG4622 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17042385	X_17042385_SNP [dm3] X_17148352_SNP [dm6]	G	A	4.840e^-4	0.974	UPSTREAM CG5010 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	10315159	3R_10315159_SNP [dm3] 3R_14489437_SNP [dm6]	C	T	4.841e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
X	18816284	X_18816284_SNP [dm3] X_18922251_SNP [dm6]	A	G	4.852e^-4	0.974	INTERGENIC
3L	1913735	3L_1913735_SNP [dm3] 3L_1913735_SNP [dm6]	A	G	4.857e^-4	0.974	INTERGENIC
3R	3397456	3R_3397456_SNP [dm3] 3R_7571734_SNP [dm6]	T	G	4.858e^-4	0.974	UTR_3_PRIME CG34127
2R	10863997	2R_10863997_SNP [dm3] 2R_14976492_SNP [dm6]	C	G	4.863e^-4	0.974	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12235202	3L_12235202_SNP [dm3] 3L_12242102_SNP [dm6]	A	T	4.867e^-4	0.974	INTRON app
2L	3684702	2L_3684702_SNP [dm3] 2L_3684702_SNP [dm6]	A	G	4.869e^-4	0.974	INTRON CG34340	TF binding site mE1_TFBS_chinmo
3L	9596510	3L_9596510_SNP [dm3] 3L_9603410_SNP [dm6]	G	T	4.873e^-4	0.974	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3L	17583295	3L_17583295_SNP [dm3] 3L_17590195_SNP [dm6]	G	T	4.873e^-4	0.974	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	4.882e^-4	0.974	INTERGENIC
2R	7938468	2R_7938468_DEL [dm3] 2R_12050963_DEL [dm6]	TCT	T	4.892e^-4	0.974	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4198048	2R_4198048_INS [dm3] 2R_8310543_INS [dm6]	A	AA	4.893e^-4	0.974	DOWNSTREAM CR44449 & 1 other INTERGENIC
X	10918004	X_10918004_INS [dm3] X_11023971_INS [dm6]	T	TAT	4.910e^-4	0.974	INTRON CG42339
X	1792536	X_1792536_SNP [dm3] X_1898503_SNP [dm6]	C	T	4.916e^-4	0.974	INTRON arm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens
2L	20694983	2L_20694983_SNP [dm3] 2L_20694983_SNP [dm6]	A	C	4.917e^-4	0.974	INTRON Hr38	TF binding site mE1_TFBS_sens
3R	26768178	3R_26768178_DEL [dm3] 3R_30942456_DEL [dm6]	AAATGGGAA	A	4.920e^-4	0.974	INTERGENIC
2L	15031496	2L_15031496_SNP [dm3] 2L_15031496_SNP [dm6]	A	T	4.923e^-4	0.974	NON_SYNONYMOUS_CODING CG31832 INTRON GABA-B-R1
X	4287295	X_4287295_SNP [dm3] X_4393262_SNP [dm6]	A	G	4.931e^-4	0.974	INTRON CR32773
3R	16713161	3R_16713161_SNP [dm3] 3R_20887439_SNP [dm6]	C	A	4.932e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5805808	2L_5805808_SNP [dm3] 2L_5805808_SNP [dm6]	G	C	4.957e^-4	0.974	INTRON CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	17156571	3R_17156571_SNP [dm3] 3R_21330849_SNP [dm6]	C	T	4.966e^-4	0.974	INTRON CG16791
2R	15491671	2R_15491671_SNP [dm3] 2R_19604166_SNP [dm6]	C	T	4.968e^-4	0.974	DOWNSTREAM CR44474 & 1 other INTRON sm
3L	12087780	3L_12087780_SNP [dm3] 3L_12094680_SNP [dm6]	A	C	4.972e^-4	0.974	INTERGENIC
2R	12364246	2R_12364246_SNP [dm3] 2R_16476741_SNP [dm6]	C	T	4.972e^-4	0.974	INTERGENIC
X	9264238	X_9264238_SNP [dm3] X_9370205_SNP [dm6]	T	G	4.973e^-4	0.974	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_sens
3R	9659939	3R_9659939_INS [dm3] 3R_13834217_INS [dm6]	G	GTGTGGGTAAGTAAAG...	4.974e^-4	0.974	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
2R	3434124	2R_3434124_SNP [dm3] 2R_7546619_SNP [dm6]	A	C	4.976e^-4	0.974	INTRON Corin
X	6476445	X_6476445_SNP [dm3] X_6582412_SNP [dm6]	A	G	4.981e^-4	0.974	SYNONYMOUS_CODING CG34417 INTRON CG34417
2L	12266364	2L_12266364_SNP [dm3] 2L_12266364_SNP [dm6]	A	C	4.992e^-4	0.974	INTRON aret
3R	20740426	3R_20740426_SNP [dm3] 3R_24914704_SNP [dm6]	G	A	4.994e^-4	0.974	SPLICE_SITE_REGION PIG-S UPSTREAM tRNA:CR31382 DOWNSTREAM tRNA:CR31416 INTRON PIG-S
2R	15993051	2R_15993051_SNP [dm3] 2R_20105546_SNP [dm6]	A	G	4.995e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	2811419	X_2811419_SNP [dm3] X_2917386_SNP [dm6]	A	G	5.004e^-4	0.974	INTRON kirre
2R	17208253	2R_17208253_SNP [dm3] 2R_21320748_SNP [dm6]	T	G	5.009e^-4	0.974	NON_SYNONYMOUS_CODING CG30394 UPSTREAM CG33655	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17208265	2R_17208265_SNP [dm3] 2R_21320760_SNP [dm6]	C	T	5.009e^-4	0.974	NON_SYNONYMOUS_CODING CG30394 UPSTREAM CG33655	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	135573	4_135573_DEL [dm3] 4_114947_DEL [dm6]	AACTTA	C	5.011e^-4	0.974	DOWNSTREAM Ank & 1 other INTERGENIC	transposable element FlyBase
2L	4836428	2L_4836428_INS [dm3] 2L_4836428_INS [dm6]	T	TTCTT	5.014e^-4	0.974	INTRON tank
3L	15275385	3L_15275385_SNP [dm3] 3L_15282285_SNP [dm6]	G	T	5.033e^-4	0.974	INTERGENIC
2L	9518142	2L_9518142_SNP [dm3] 2L_9518142_SNP [dm6]	A	G	5.044e^-4	0.974	SYNONYMOUS_CODING CG33298
3L	15284729	3L_15284729_SNP [dm3] 3L_15291629_SNP [dm6]	C	G	5.045e^-4	0.974	INTERGENIC
3R	2979182	3R_2979182_SNP [dm3] 3R_7153460_SNP [dm6]	A	G	5.048e^-4	0.974	NON_SYNONYMOUS_CODING Sas-4 DOWNSTREAM MAGE	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	21015948	3R_21015948_SNP [dm3] 3R_25190226_SNP [dm6]	A	T	5.050e^-4	0.974	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16639399	2L_16639399_SNP [dm3] 2L_16639399_SNP [dm6]	C	A	5.052e^-4	0.974	INTRON CG42389
X	11105085	X_11105085_SNP [dm3] X_11211052_SNP [dm6]	A	T	5.054e^-4	0.974	INTERGENIC
X	11105054	X_11105054_SNP [dm3] X_11211021_SNP [dm6]	A	T	5.069e^-4	0.974	INTERGENIC
2R	15994004	2R_15994004_SNP [dm3] 2R_20106499_SNP [dm6]	T	A	5.070e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	1799527	X_1799527_SNP [dm3] X_1905494_SNP [dm6]	T	C	5.072e^-4	0.974	NON_SYNONYMOUS_CODING Edem1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14781163	3R_14781163_SNP [dm3] 3R_18955441_SNP [dm6]	G	A	5.105e^-4	0.974	INTRON CG42613 & 1 other
3R	27087420	3R_27087420_SNP [dm3] 3R_31261698_SNP [dm6]	C	T	5.117e^-4	0.974	UPSTREAM CG18673 DOWNSTREAM CG18672 INTERGENIC
2R	15993058	2R_15993058_INS [dm3] 2R_20105553_INS [dm6]	T	TAACGATTACTTGTAT...	5.123e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	15138791	3R_15138791_SNP [dm3] 3R_19313069_SNP [dm6]	A	G	5.124e^-4	0.974	INTRON Dl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9794841	3L_9794841_SNP [dm3] 3L_9801741_SNP [dm6]	C	T	5.131e^-4	0.974	SYNONYMOUS_CODING Ilp3 INTRON CG32052	TF binding site mE1_TFBS_cad
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	5.139e^-4	0.974	INTRON CG11537
3L	9010112	3L_9010112_SNP [dm3] 3L_9017012_SNP [dm6]	A	T	5.146e^-4	0.974	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1261448	3L_1261448_SNP [dm3] 3L_1261448_SNP [dm6]	A	T	5.147e^-4	0.974	INTRON CG9134
X	11591290	X_11591290_SNP [dm3] X_11697257_SNP [dm6]	T	A	5.148e^-4	0.974	INTRON PhKgamma	TF binding site mE1_TFBS_sens
3L	18898322	3L_18898322_SNP [dm3] 3L_18905222_SNP [dm6]	A	G	5.151e^-4	0.974	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18215091	3R_18215091_SNP [dm3] 3R_22389369_SNP [dm6]	T	C	5.163e^-4	0.974	START_GAINED CG5379 UTR_5_PRIME CG5379 UPSTREAM CG5379 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	9450337	2L_9450337_DEL [dm3] 2L_9450337_DEL [dm6]	CCAA	C	5.166e^-4	0.974	UTR_5_PRIME numb INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Trl
2L	9363552	2L_9363552_SNP [dm3] 2L_9363552_SNP [dm6]	G	A	5.168e^-4	0.974	UPSTREAM CR43404 INTERGENIC
3L	13534090	3L_13534090_SNP [dm3] 3L_13540990_SNP [dm6]	T	G	5.180e^-4	0.974	INTRON bru-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	1789179	X_1789179_SNP [dm3] X_1895146_SNP [dm6]	G	A	5.197e^-4	0.974	SYNONYMOUS_CODING arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2907747	2L_2907747_SNP [dm3] 2L_2907747_SNP [dm6]	C	G	5.207e^-4	0.974	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2R	15490600	2R_15490600_SNP [dm3] 2R_19603095_SNP [dm6]	A	T	5.209e^-4	0.974	UPSTREAM CR44473 INTRON sm
3L	7296607	3L_7296607_SNP [dm3] 3L_7303507_SNP [dm6]	A	G	5.221e^-4	0.974	INTRON unc-13-4A
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	5.225e^-4	0.974	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
2R	15323698	2R_15323698_SNP [dm3] 2R_19436193_SNP [dm6]	C	T	5.227e^-4	0.974	SYNONYMOUS_CODING Fak	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	16713158	3R_16713158_SNP [dm3] 3R_20887436_SNP [dm6]	T	A	5.231e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
X	14962324	X_14962324_SNP [dm3] X_15068291_SNP [dm6]	C	T	5.236e^-4	0.974	NON_SYNONYMOUS_CODING dob DOWNSTREAM Lsd-2
X	4066462	X_4066462_SNP [dm3] X_4172429_SNP [dm6]	C	T	5.249e^-4	0.974	INTRON Fas2
2R	13327089	2R_13327089_SNP [dm3] 2R_17439584_SNP [dm6]	G	A	5.250e^-4	0.974	UPSTREAM CG18467 INTRON EDTP
2L	5593241	2L_5593241_SNP [dm3] 2L_5593241_SNP [dm6]	C	T	5.257e^-4	0.974	INTERGENIC
2R	10869125	2R_10869125_DEL [dm3] 2R_14981620_DEL [dm6]	ACA	A	5.265e^-4	0.974	UTR_5_PRIME pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
X	517233	X_517233_SNP [dm3] X_623200_SNP [dm6]	T	A	5.274e^-4	0.974	UPSTREAM CG13369 DOWNSTREAM mod_r_ INTERGENIC
3L	12908612	3L_12908612_SNP [dm3] 3L_12915512_SNP [dm6]	T	A	5.279e^-4	0.974	INTERGENIC
3L	7303722	3L_7303722_SNP [dm3] 3L_7310622_SNP [dm6]	C	T	5.292e^-4	0.974	INTRON unc-13-4A
X	13525147	X_13525147_SNP [dm3] X_13631114_SNP [dm6]	C	T	5.293e^-4	0.974	INTRON NFAT
X	15257945	X_15257945_SNP [dm3] X_15363912_SNP [dm6]	G	T	5.302e^-4	0.974	INTRON acj6
2L	4847206	2L_4847206_SNP [dm3] 2L_4847206_SNP [dm6]	G	A	5.310e^-4	0.974	UTR_5_PRIME mxt UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	18898550	3L_18898550_SNP [dm3] 3L_18905450_SNP [dm6]	T	A	5.314e^-4	0.974	UTR_5_PRIME CG6841 UPSTREAM CSN1b	TF binding site BDTNP1_TFBS_dl
2R	16584443	2R_16584443_SNP [dm3] 2R_20696938_SNP [dm6]	G	A	5.317e^-4	0.974	INTERGENIC
2R	10194124	2R_10194124_SNP [dm3] 2R_14306619_SNP [dm6]	T	G	5.322e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	17989996	X_17989996_SNP [dm3] X_18095963_SNP [dm6]	T	C	5.326e^-4	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	18907297	X_18907297_SNP [dm3] X_19013264_SNP [dm6]	C	G	5.339e^-4	0.974	SYNONYMOUS_CODING CG43759	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	1790236	X_1790236_SNP [dm3] X_1896203_SNP [dm6]	A	G	5.343e^-4	0.974	SYNONYMOUS_CODING arm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	1794280	X_1794280_SNP [dm3] X_1900247_SNP [dm6]	T	C	5.343e^-4	0.974	UPSTREAM arm DOWNSTREAM CG32803 INTRON arm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10196078	2R_10196078_SNP [dm3] 2R_14308573_SNP [dm6]	G	A	5.343e^-4	0.974	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	14435841	2R_14435841_SNP [dm3] 2R_18548336_SNP [dm6]	A	G	5.346e^-4	0.974	UTR_3_PRIME Rgk2
2L	15872206	2L_15872206_SNP [dm3] 2L_15872206_SNP [dm6]	G	A	5.348e^-4	0.974	INTERGENIC
3L	4107164	3L_4107164_SNP [dm3] 3L_4107164_SNP [dm6]	T	C	5.353e^-4	0.974	DOWNSTREAM Fit1 EXON CR45670
X	3519762	X_3519762_SNP [dm3] X_3625729_SNP [dm6]	T	A	5.388e^-4	0.974	INTRON AstA-R1
2R	12674802	2R_12674802_SNP [dm3] 2R_16787297_SNP [dm6]	T	A	5.400e^-4	0.974	UTR_5_PRIME CG5522 INTRON CG5522
X	15497020	X_15497020_SNP [dm3] X_15602987_SNP [dm6]	A	C	5.414e^-4	0.974	DOWNSTREAM sog INTERGENIC
3R	1977433	3R_1977433_SNP [dm3] 3R_6151711_SNP [dm6]	A	T	5.421e^-4	0.974	INTRON CG31559
X	669714	X_669714_SNP [dm3] X_775681_SNP [dm6]	G	C	5.427e^-4	0.974	INTRON fz3
2R	5270614	2R_5270614_SNP [dm3] 2R_9383109_SNP [dm6]	A	G	5.430e^-4	0.974	INTRON CG13954
2L	10407012	2L_10407012_SNP [dm3] 2L_10407012_SNP [dm6]	C	A	5.434e^-4	0.974	NON_SYNONYMOUS_CODING Ir31a
3L	6543510	3L_6543510_SNP [dm3] 3L_6550410_SNP [dm6]	T	A	5.442e^-4	0.974	UPSTREAM CG18769 DOWNSTREAM sfl INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3L	18632352	3L_18632352_SNP [dm3] 3L_18639252_SNP [dm6]	C	T	5.444e^-4	0.974	INTRON MYPT-75D
3R	15152282	3R_15152282_SNP [dm3] 3R_19326560_SNP [dm6]	A	G	5.459e^-4	0.974	UPSTREAM Dl DOWNSTREAM CR44175 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	1078558	3L_1078558_SNP [dm3] 3L_1078558_SNP [dm6]	A	G	5.461e^-4	0.974	INTRON bab1	TF binding site mE1_TFBS_HSA
3R	7098300	3R_7098300_SNP [dm3] 3R_11272578_SNP [dm6]	C	T	5.464e^-4	0.974	INTRON CR31386
X	1790945	X_1790945_SNP [dm3] X_1896912_SNP [dm6]	T	C	5.466e^-4	0.974	INTRON arm
3L	16983476	3L_16983476_SNP [dm3] 3L_16990376_SNP [dm6]	C	T	5.470e^-4	0.974	INTRON Exn
3L	7535003	3L_7535003_SNP [dm3] 3L_7541903_SNP [dm6]	G	A	5.485e^-4	0.974	SYNONYMOUS_CODING CG32376 UPSTREAM CG32374	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19844878	3R_19844878_SNP [dm3] 3R_24019156_SNP [dm6]	G	T	5.488e^-4	0.974	INTRON KrT95D
2L	14836529	2L_14836529_SNP [dm3] 2L_14836529_SNP [dm6]	G	A	5.489e^-4	0.974	INTERGENIC
3L	7697402	3L_7697402_SNP [dm3] 3L_7704302_SNP [dm6]	T	G	5.491e^-4	0.974	DOWNSTREAM Ank2 INTRON CG32373 & 1 other
2L	9796041	2L_9796041_SNP [dm3] 2L_9796041_SNP [dm6]	C	A	5.499e^-4	0.974	UTR_3_PRIME nAChRalpha6 DOWNSTREAM nAChRalpha6
X	17075774	X_17075774_SNP [dm3] X_17181741_SNP [dm6]	G	C	5.501e^-4	0.974	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16293611	3R_16293611_SNP [dm3] 3R_20467889_SNP [dm6]	G	T	5.507e^-4	0.974	INTRON Gfrl
3R	19915115	3R_19915115_SNP [dm3] 3R_24089393_SNP [dm6]	C	T	5.510e^-4	0.974	INTRON 4EHP
2L	13055500	2L_13055500_SNP [dm3] 2L_13055500_SNP [dm6]	T	C	5.518e^-4	0.974	INTRON CG9932
2L	3758927	2L_3758927_SNP [dm3] 2L_3758927_SNP [dm6]	C	A	5.527e^-4	0.974	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	11227300	2L_11227300_SNP [dm3] 2L_11227300_SNP [dm6]	T	A	5.544e^-4	0.974	INTRON ab
X	10061045	X_10061045_SNP [dm3] X_10167012_SNP [dm6]	T	C	5.559e^-4	0.974	INTRON CR44894 & 1 other
2R	7232689	2R_7232689_SNP [dm3] 2R_11345184_SNP [dm6]	A	T	5.564e^-4	0.974	UPSTREAM alphaTry DOWNSTREAM epsilonTry INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13722774	2R_13722774_SNP [dm3] 2R_17835269_SNP [dm6]	A	G	5.569e^-4	0.974	INTRON grh
3L	5234933	3L_5234933_SNP [dm3] 3L_5241833_SNP [dm6]	T	A	5.570e^-4	0.974	INTRON shep
3R	23230613	3R_23230613_SNP [dm3] 3R_27404891_SNP [dm6]	T	A	5.574e^-4	0.974	INTRON side
2L	5936960	2L_5936960_SNP [dm3] 2L_5936960_SNP [dm6]	C	T	5.574e^-4	0.974	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19968629	3R_19968629_SNP [dm3] 3R_24142907_SNP [dm6]	A	G	5.613e^-4	0.974	INTRON Kal1
3R	21136841	3R_21136841_SNP [dm3] 3R_25311119_SNP [dm6]	C	T	5.618e^-4	0.974	UTR_3_PRIME CG31087 UPSTREAM CG31099
3R	22237000	3R_22237000_SNP [dm3] 3R_26411278_SNP [dm6]	T	C	5.623e^-4	0.974	INTERGENIC
2R	4682522	2R_4682522_SNP [dm3] 2R_8795017_SNP [dm6]	G	A	5.629e^-4	0.974	INTERGENIC
2R	3552956	2R_3552956_SNP [dm3] 2R_7665451_SNP [dm6]	A	T	5.631e^-4	0.974	UPSTREAM CG2064 DOWNSTREAM CG2065 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10361849	3L_10361849_SNP [dm3] 3L_10368749_SNP [dm6]	T	C	5.633e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_cad
X	7641753	X_7641753_SNP [dm3] X_7747720_SNP [dm6]	G	C	5.645e^-4	0.974	INTERGENIC
3R	21179337	3R_21179337_SNP [dm3] 3R_25353615_SNP [dm6]	A	G	5.648e^-4	0.974	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	15257938	X_15257938_SNP [dm3] X_15363905_SNP [dm6]	G	A	5.648e^-4	0.974	INTRON acj6
3R	4028664	3R_4028664_SNP [dm3] 3R_8202942_SNP [dm6]	C	T	5.650e^-4	0.974	DOWNSTREAM CR43303 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3845075	2L_3845075_SNP [dm3] 2L_3845075_SNP [dm6]	A	T	5.655e^-4	0.974	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16770678	3R_16770678_SNP [dm3] 3R_20944956_SNP [dm6]	A	G	5.668e^-4	0.974	INTRON CG31191
2R	16213736	2R_16213736_SNP [dm3] 2R_20326231_SNP [dm6]	C	T	5.669e^-4	0.974	SYNONYMOUS_CODING MED8 DOWNSTREAM CG8920	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	13080287	2R_13080287_SNP [dm3] 2R_17192782_SNP [dm6]	C	T	5.677e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16983486	3L_16983486_SNP [dm3] 3L_16990386_SNP [dm6]	A	G	5.677e^-4	0.974	INTRON Exn
3L	8745709	3L_8745709_SNP [dm3] 3L_8752609_SNP [dm6]	T	A	5.690e^-4	0.974	UPSTREAM CR44527 INTERGENIC
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	5.692e^-4	0.974	INTRON CG43340
2R	3535021	2R_3535021_SNP [dm3] 2R_7647516_SNP [dm6]	G	C	5.694e^-4	0.974	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3R	22741159	3R_22741159_SNP [dm3] 3R_26915437_SNP [dm6]	G	A	5.700e^-4	0.974	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18839432	3L_18839432_SNP [dm3] 3L_18846332_SNP [dm6]	T	G	5.705e^-4	0.974	UPSTREAM Indy INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4591755	2L_4591755_SNP [dm3] 2L_4591755_SNP [dm6]	C	A	5.709e^-4	0.974	UTR_5_PRIME dp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	15491604	2R_15491604_SNP [dm3] 2R_19604099_SNP [dm6]	C	A	5.711e^-4	0.974	DOWNSTREAM CR44474 & 1 other INTRON sm
X	15257777	X_15257777_DEL [dm3] X_15363744_DEL [dm6]	ATT	A	5.714e^-4	0.974	INTRON acj6
3R	19126495	3R_19126495_SNP [dm3] 3R_23300773_SNP [dm6]	G	A	5.717e^-4	0.974	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	7641720	X_7641720_SNP [dm3] X_7747687_SNP [dm6]	G	A	5.719e^-4	0.974	INTERGENIC
2R	17416978	2R_17416978_DEL [dm3] 2R_21529473_DEL [dm6]	AGCTGGTTAAGTA...	A	5.721e^-4	0.974	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1121845	2L_1121845_SNP [dm3] 2L_1121845_SNP [dm6]	T	A	5.721e^-4	0.974	INTRON Pino
3L	17485322	3L_17485322_SNP [dm3] 3L_17492222_SNP [dm6]	A	T	5.722e^-4	0.974	INTRON Oatp74D
2R	16096989	2R_16096989_SNP [dm3] 2R_20209484_SNP [dm6]	C	G	5.738e^-4	0.974	INTERGENIC
3R	13064976	3R_13064976_SNP [dm3] 3R_17239254_SNP [dm6]	A	T	5.757e^-4	0.974	INTRON beat-IIb
3R	6651983	3R_6651983_SNP [dm3] 3R_10826261_SNP [dm6]	T	C	5.766e^-4	0.974	UPSTREAM Cad86C INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4851363	2L_4851363_SNP [dm3] 2L_4851363_SNP [dm6]	C	A	5.767e^-4	0.974	UPSTREAM mRpS2 INTRON Mon1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	12483846	2L_12483846_SNP [dm3] 2L_12483846_SNP [dm6]	T	C	5.784e^-4	0.974	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17594364	3L_17594364_DEL [dm3] 3L_17601264_DEL [dm6]	AA	A	5.788e^-4	0.974	INTRON Eip74EF
3L	15053131	3L_15053131_SNP [dm3] 3L_15060031_SNP [dm6]	C	A	5.793e^-4	0.974	DOWNSTREAM CG13460 INTRON Sytbeta
3R	25414841	3R_25414841_SNP [dm3] 3R_29589119_SNP [dm6]	G	T	5.793e^-4	0.974	NON_SYNONYMOUS_CODING CG11470 DOWNSTREAM CG31041	TF binding site mE1_TFBS_cad
2L	4859493	2L_4859493_SNP [dm3] 2L_4859493_SNP [dm6]	G	A	5.798e^-4	0.974	INTRON pog
X	6804391	X_6804391_DEL [dm3] X_6910358_DEL [dm6]	ACCA	A	5.800e^-4	0.974	INTRON CG14431
3L	12986207	3L_12986207_SNP [dm3] 3L_12993107_SNP [dm6]	T	C	5.804e^-4	0.974	INTERGENIC
2R	4177115	2R_4177115_SNP [dm3] 2R_8289610_SNP [dm6]	T	C	5.806e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	7464055	3L_7464055_SNP [dm3] 3L_7470955_SNP [dm6]	G	T	5.818e^-4	0.974	UPSTREAM CG8543 & 1 other INTERGENIC
2R	19155570	2R_19155570_SNP [dm3] 2R_23268047_SNP [dm6]	T	C	5.824e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	996464	2L_996464_SNP [dm3] 2L_996464_SNP [dm6]	C	A	5.848e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo

By genomic position
Variant impact
Gene name

pc_Tibia_Leg_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results