DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.461e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.05856

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.3918	0.0675

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1759 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	4.493e^-7	0.371	INTERGENIC
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	5.870e^-7	0.371	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	6.971e^-7	0.371	NON_SYNONYMOUS_CODING sti
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	7.923e^-7	0.371	INTRON CngA	TF binding site mE1_TFBS_inv
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	5.714e^-6	0.981	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3L	14259814	3L_14259814_SNP [dm3] 3L_14266714_SNP [dm6]	A	G	5.887e^-6	0.981	INTERGENIC
3L	14259795	3L_14259795_SNP [dm3] 3L_14266695_SNP [dm6]	A	T	6.349e^-6	0.981	INTERGENIC
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	6.934e^-6	0.981	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3L	14259792	3L_14259792_SNP [dm3] 3L_14266692_SNP [dm6]	C	A	7.341e^-6	0.981	INTERGENIC
3L	4318048	3L_4318048_SNP [dm3] 3L_4318048_SNP [dm6]	C	T	7.670e^-6	0.981	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14259817	3L_14259817_SNP [dm3] 3L_14266717_SNP [dm6]	A	T	8.681e^-6	0.981	INTERGENIC
3R	25409024	3R_25409024_SNP [dm3] 3R_29583302_SNP [dm6]	C	A	9.100e^-6	0.981	INTERGENIC
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	1.052e^-5	0.981	INTRON Tgi
X	16435414	X_16435414_SNP [dm3] X_16541381_SNP [dm6]	A	G	1.068e^-5	0.981	UPSTREAM CG9903 DOWNSTREAM CG9902 INTERGENIC
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	1.146e^-5	0.981	INTRON CngA	TF binding site mE1_TFBS_inv
3L	8383762	3L_8383762_SNP [dm3] 3L_8390662_SNP [dm6]	A	G	1.199e^-5	0.981	UTR_3_PRIME ImpE1 UPSTREAM Jon66Ci
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	1.305e^-5	0.981	INTRON bnl
3L	9245436	3L_9245436_SNP [dm3] 3L_9252336_SNP [dm6]	T	A	1.368e^-5	0.981	UTR_5_PRIME GluRIB DOWNSTREAM CG4477
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	1.719e^-5	0.981	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	1.864e^-5	0.981	INTRON SNF4Agamma
2L	8263633	2L_8263633_SNP [dm3] 2L_8263633_SNP [dm6]	C	T	1.927e^-5	0.981	INTRON Btk29A	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	1913678	3L_1913678_SNP [dm3] 3L_1913678_SNP [dm6]	A	G	2.044e^-5	0.981	INTERGENIC
2R	17727241	2R_17727241_SNP [dm3] 2R_21839736_SNP [dm6]	T	C	2.102e^-5	0.981	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	2.185e^-5	0.981	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	2.193e^-5	0.981	INTRON TyrR
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	2.233e^-5	0.981	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	2.246e^-5	0.981	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	2.273e^-5	0.981	UTR_3_PRIME Elf
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	2.282e^-5	0.981	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	2.528e^-5	0.981	INTRON dpr6
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	2.538e^-5	0.981	INTRON Tango5
2L	9769453	2L_9769453_SNP [dm3] 2L_9769453_SNP [dm6]	C	G	2.690e^-5	0.981	NON_SYNONYMOUS_CODING CG17633 DOWNSTREAM CG4017 INTRON ppk18	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2322939	3L_2322939_SNP [dm3] 3L_2322939_SNP [dm6]	C	T	2.747e^-5	0.981	INTRON MsR1
3L	18898322	3L_18898322_SNP [dm3] 3L_18905222_SNP [dm6]	A	G	2.750e^-5	0.981	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	19968629	3R_19968629_SNP [dm3] 3R_24142907_SNP [dm6]	A	G	2.863e^-5	0.981	INTRON Kal1
X	3822303	X_3822303_SNP [dm3] X_3928270_SNP [dm6]	A	T	2.966e^-5	0.981	INTRON CG42541
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	3.177e^-5	0.981	INTRON GABA-B-R1
3L	3135861	3L_3135861_SNP [dm3] 3L_3135861_SNP [dm6]	C	T	3.331e^-5	0.981	INTRON CG11537
2R	16584443	2R_16584443_SNP [dm3] 2R_20696938_SNP [dm6]	G	A	3.407e^-5	0.981	INTERGENIC
3R	19452240	3R_19452240_SNP [dm3] 3R_23626518_SNP [dm6]	C	A	3.448e^-5	0.981	INTRON CG31145	TF binding site mE1_TFBS_chinmo
3L	18192022	3L_18192022_SNP [dm3] 3L_18198922_SNP [dm6]	G	T	3.453e^-5	0.981	INTERGENIC
2R	14282208	2R_14282208_SNP [dm3] 2R_18394703_SNP [dm6]	T	A	3.480e^-5	0.981	NON_SYNONYMOUS_CODING Idgf5
2R	14282222	2R_14282222_SNP [dm3] 2R_18394717_SNP [dm6]	C	T	3.480e^-5	0.981	SYNONYMOUS_CODING Idgf5
X	15128504	X_15128504_SNP [dm3] X_15234471_SNP [dm6]	G	T	3.520e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12932154	X_12932154_SNP [dm3] X_13038121_SNP [dm6]	G	A	3.670e^-5	0.981	INTRON rad
2R	18563878	2R_18563878_SNP [dm3] 2R_22676373_SNP [dm6]	A	G	3.670e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	3695799	2L_3695799_SNP [dm3] 2L_3695799_SNP [dm6]	G	A	3.716e^-5	0.981	UPSTREAM CG43165 & 1 other DOWNSTREAM CG16712 INTERGENIC
2R	17085461	2R_17085461_SNP [dm3] 2R_21197956_SNP [dm6]	C	A	3.851e^-5	0.981	INTRON Lapsyn
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	3.867e^-5	0.981	INTRON CG4374
2R	16939931	2R_16939931_SNP [dm3] 2R_21052426_SNP [dm6]	T	A	4.195e^-5	0.981	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	4.315e^-5	0.981	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	18030236	X_18030236_SNP [dm3] X_18136203_SNP [dm6]	A	G	4.388e^-5	0.981	INTRON ari-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	4.542e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7908803	3L_7908803_SNP [dm3] 3L_7915703_SNP [dm6]	T	G	4.663e^-5	0.981	NON_SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14781163	3R_14781163_SNP [dm3] 3R_18955441_SNP [dm6]	G	A	4.691e^-5	0.981	INTRON CG42613 & 1 other
3L	12986197	3L_12986197_SNP [dm3] 3L_12993097_SNP [dm6]	A	T	4.704e^-5	0.981	INTERGENIC
3R	6497610	3R_6497610_SNP [dm3] 3R_10671888_SNP [dm6]	G	A	4.756e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3822406	X_3822406_SNP [dm3] X_3928373_SNP [dm6]	G	A	4.848e^-5	0.981	INTRON CG42541
3L	9544935	3L_9544935_SNP [dm3] 3L_9551835_SNP [dm6]	T	A	5.068e^-5	0.981	INTRON CG42673
3R	8383056	3R_8383056_SNP [dm3] 3R_12557334_SNP [dm6]	G	A	5.188e^-5	0.981	INTRON Octbeta2R
3L	12986194	3L_12986194_SNP [dm3] 3L_12993094_SNP [dm6]	A	T	5.204e^-5	0.981	INTERGENIC
2L	6778840	2L_6778840_SNP [dm3] 2L_6778840_SNP [dm6]	A	T	5.227e^-5	0.981	UTR_3_PRIME nrv1 DOWNSTREAM CG17378
X	12169425	X_12169425_SNP [dm3] X_12275392_SNP [dm6]	C	T	5.279e^-5	0.981	DOWNSTREAM CG45603 INTRON Ten-a
X	15128331	X_15128331_SNP [dm3] X_15234298_SNP [dm6]	T	C	5.310e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11104711	3L_11104711_SNP [dm3] 3L_11111611_SNP [dm6]	G	A	5.376e^-5	0.981	NON_SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	5.398e^-5	0.981	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	5.584e^-5	0.981	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5270484	2R_5270484_DEL [dm3] 2R_9382979_DEL [dm6]	ACTAATACA	A	5.593e^-5	0.981	INTRON CG13954
3L	1666520	3L_1666520_SNP [dm3] 3L_1666520_SNP [dm6]	A	G	5.757e^-5	0.981	UTR_3_PRIME CG7974 DOWNSTREAM snoRNA:Me28S-A2634b & 3 others INTRON Uhg7 EXON snoRNA:Me28S-A2634c	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11299654	3L_11299654_SNP [dm3] 3L_11306554_SNP [dm6]	T	C	5.771e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5270614	2R_5270614_SNP [dm3] 2R_9383109_SNP [dm6]	A	G	5.845e^-5	0.981	INTRON CG13954
3R	18483257	3R_18483257_SNP [dm3] 3R_22657535_SNP [dm6]	G	A	5.904e^-5	0.981	INTRON CG45058
X	10734320	X_10734320_SNP [dm3] X_10840287_SNP [dm6]	G	A	6.019e^-5	0.981	DOWNSTREAM CG15210 INTRON sbr	TF binding site BDTNP1_TFBS_twi
2R	10864025	2R_10864025_SNP [dm3] 2R_14976520_SNP [dm6]	G	C	6.031e^-5	0.981	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13542947	3L_13542947_SNP [dm3] 3L_13549847_SNP [dm6]	G	A	6.031e^-5	0.981	INTRON bru-3
X	10617336	X_10617336_INS [dm3] X_10723303_INS [dm6]	G	GAGCGGGGCGGGCGGTAAGA...	6.051e^-5	0.981	INTRON CG32676
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	6.113e^-5	0.981	INTRON bnl
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	6.177e^-5	0.981	INTRON bnl
3L	10852580	3L_10852580_INS [dm3] 3L_10859480_INS [dm6]	T	TAT	6.350e^-5	0.981	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	6.579e^-5	0.981	INTERGENIC
3L	18654970	3L_18654970_SNP [dm3] 3L_18661870_SNP [dm6]	A	G	6.590e^-5	0.981	UTR_5_PRIME MYPT-75D
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	6.722e^-5	0.981	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18468957	3R_18468957_SNP [dm3] 3R_22643235_SNP [dm6]	T	C	6.859e^-5	0.981	INTRON CG45058
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	7.026e^-5	0.981	UTR_5_PRIME CG6841 UPSTREAM CSN1b
2R	7296150	2R_7296150_SNP [dm3] 2R_11408645_SNP [dm6]	C	A	7.063e^-5	0.981	UTR_3_PRIME CG30026 DOWNSTREAM CG7759	TF binding site mE1_TFBS_bab1
X	3918834	X_3918834_DEL [dm3] X_4024801_DEL [dm6]	AA	A	7.101e^-5	0.981	INTERGENIC
3L	15261121	3L_15261121_SNP [dm3] 3L_15268021_SNP [dm6]	A	T	7.149e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	19283763	3R_19283763_SNP [dm3] 3R_23458041_SNP [dm6]	A	G	7.203e^-5	0.981	INTRON CG4374
2R	16939934	2R_16939934_SNP [dm3] 2R_21052429_SNP [dm6]	C	G	7.217e^-5	0.981	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1760104	2L_1760104_SNP [dm3] 2L_1760104_SNP [dm6]	C	A	7.263e^-5	0.981	INTERGENIC
2R	19438074	2R_19438074_SNP [dm3] 2R_23550551_SNP [dm6]	G	A	7.369e^-5	0.981	SYNONYMOUS_CODING pita UPSTREAM Dcp-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens
3L	2362670	3L_2362670_SNP [dm3] 3L_2362670_SNP [dm6]	T	A	7.539e^-5	0.981	UTR_3_PRIME CG13801
3L	2357622	3L_2357622_INS [dm3] 3L_2357622_INS [dm6]	A	ATATTTACA	7.571e^-5	0.981	INTERGENIC
2R	14199987	2R_14199987_SNP [dm3] 2R_18312482_SNP [dm6]	G	A	7.576e^-5	0.981	DOWNSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19733539	2L_19733539_SNP [dm3] 2L_19733539_SNP [dm6]	A	G	7.738e^-5	0.981	NON_SYNONYMOUS_CODING CG10462	TF binding site mE1_TFBS_sens
X	1783119	X_1783119_SNP [dm3] X_1889086_SNP [dm6]	T	G	7.834e^-5	0.981	SYNONYMOUS_CODING trr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	7.907e^-5	0.981	INTRON bnl
3L	7382966	3L_7382966_SNP [dm3] 3L_7389866_SNP [dm6]	G	C	7.912e^-5	0.981	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7382971	3L_7382971_SNP [dm3] 3L_7389871_SNP [dm6]	A	T	7.912e^-5	0.981	UPSTREAM CG8563 INTERGENIC	TF binding site mE1_TFBS_inv
3L	7908766	3L_7908766_SNP [dm3] 3L_7915666_SNP [dm6]	A	G	8.156e^-5	0.981	SYNONYMOUS_CODING CG32368 UPSTREAM CG8111 DOWNSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.023e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01855

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.9071	0.0522

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1706 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Show entries

Search:

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	1.604e^-7	0.301	NON_SYNONYMOUS_CODING sti
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	2.334e^-6	0.974	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	3.277e^-6	0.974	INTRON CngA	TF binding site mE1_TFBS_inv
3L	4318164	3L_4318164_SNP [dm3] 3L_4318164_SNP [dm6]	C	T	4.104e^-6	0.974	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA
X	14583755	X_14583755_SNP [dm3] X_14689722_SNP [dm6]	A	T	5.047e^-6	0.974	UTR_3_PRIME NetB
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	6.685e^-6	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
2R	12131858	2R_12131858_SNP [dm3] 2R_16244353_SNP [dm6]	A	T	8.230e^-6	0.974	INTRON CngA	TF binding site mE1_TFBS_inv
3L	5191651	3L_5191651_SNP [dm3] 3L_5198551_SNP [dm6]	G	A	8.413e^-6	0.974	INTRON shep
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	8.776e^-6	0.974	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	18998636	2R_18998636_SNP [dm3] 2R_23111113_SNP [dm6]	A	T	9.013e^-6	0.974	EXON CR44781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11384876	2R_11384876_SNP [dm3] 2R_15497371_SNP [dm6]	A	G	1.091e^-5	0.974	UPSTREAM CG12964 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	8622179	X_8622179_SNP [dm3] X_8728146_SNP [dm6]	G	C	1.275e^-5	0.974	INTERGENIC
X	15808618	X_15808618_SNP [dm3] X_15914585_SNP [dm6]	A	T	1.428e^-5	0.974	INTRON CG8909
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	1.437e^-5	0.974	INTRON Cip4
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	1.449e^-5	0.974	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4420274	3R_4420274_SNP [dm3] 3R_8594552_SNP [dm6]	T	A	1.479e^-5	0.974	INTRON 5-HT2B
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	1.730e^-5	0.974	UTR_3_PRIME Elf
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	1.816e^-5	0.974	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	14282208	2R_14282208_SNP [dm3] 2R_18394703_SNP [dm6]	T	A	1.833e^-5	0.974	NON_SYNONYMOUS_CODING Idgf5
2R	14282222	2R_14282222_SNP [dm3] 2R_18394717_SNP [dm6]	C	T	1.833e^-5	0.974	SYNONYMOUS_CODING Idgf5
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	1.872e^-5	0.974	INTRON Tgi
3L	18901900	3L_18901900_SNP [dm3] 3L_18908800_SNP [dm6]	A	C	1.946e^-5	0.974	UTR_3_PRIME CG6841 INTRON CG14077 & 1 other	TF binding site mE1_TFBS_cad
X	12932154	X_12932154_SNP [dm3] X_13038121_SNP [dm6]	G	A	2.004e^-5	0.974	INTRON rad
2L	2287082	2L_2287082_SNP [dm3] 2L_2287082_SNP [dm6]	A	T	2.084e^-5	0.974	UTR_3_PRIME CG42658 UPSTREAM CG31681
3R	23546613	3R_23546613_SNP [dm3] 3R_27720891_SNP [dm6]	A	G	2.094e^-5	0.974	INTERGENIC
3L	17944474	3L_17944474_DEL [dm3] 3L_17951374_DEL [dm6]	CC	C	2.291e^-5	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
X	15808619	X_15808619_SNP [dm3] X_15914586_SNP [dm6]	G	A	2.331e^-5	0.974	INTRON CG8909
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	2.610e^-5	0.974	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16555270	X_16555270_SNP [dm3] X_16661237_SNP [dm6]	T	C	2.771e^-5	0.974	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3L	1277747	3L_1277747_SNP [dm3] 3L_1277747_SNP [dm6]	A	C	2.863e^-5	0.974	INTRON CG32333
3L	9245436	3L_9245436_SNP [dm3] 3L_9252336_SNP [dm6]	T	A	2.884e^-5	0.974	UTR_5_PRIME GluRIB DOWNSTREAM CG4477
3R	23546624	3R_23546624_SNP [dm3] 3R_27720902_SNP [dm6]	C	G	2.940e^-5	0.974	INTERGENIC
2R	17127233	2R_17127233_SNP [dm3] 2R_21239728_SNP [dm6]	A	G	3.071e^-5	0.974	INTRON ASPP
X	517074	X_517074_DEL [dm3] X_623041_DEL [dm6]	AA	A	3.167e^-5	0.974	UTR_3_PRIME mod_r_ UPSTREAM CG13369
3R	18337595	3R_18337595_SNP [dm3] 3R_22511873_SNP [dm6]	G	A	3.230e^-5	0.974	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	14353924	2R_14353924_SNP [dm3] 2R_18466419_SNP [dm6]	G	C	3.250e^-5	0.974	INTRON CG30116
2R	4150957	2R_4150957_INS [dm3] 2R_8263452_INS [dm6]	T	TAAAA	3.434e^-5	0.974	UPSTREAM CG12126 DOWNSTREAM CG30376 INTERGENIC
3L	11434063	3L_11434063_SNP [dm3] 3L_11440963_SNP [dm6]	A	G	3.454e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1248392	3L_1248392_SNP [dm3] 3L_1248392_SNP [dm6]	C	A	3.474e^-5	0.974	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	23546658	3R_23546658_SNP [dm3] 3R_27720936_SNP [dm6]	C	T	3.631e^-5	0.974	INTERGENIC
2L	4113414	2L_4113414_SNP [dm3] 2L_4113414_SNP [dm6]	G	T	3.868e^-5	0.974	INTRON ed
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	4.003e^-5	0.974	INTRON dpr6
3R	22715161	3R_22715161_SNP [dm3] 3R_26889439_SNP [dm6]	C	G	4.032e^-5	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	4.038e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	4.040e^-5	0.974	INTRON Tango5
3L	13708813	3L_13708813_SNP [dm3] 3L_13715713_SNP [dm6]	A	G	4.059e^-5	0.974	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1248428	3L_1248428_SNP [dm3] 3L_1248428_SNP [dm6]	A	G	4.101e^-5	0.974	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	4.171e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	4.264e^-5	0.974	INTERGENIC
X	8149714	X_8149714_SNP [dm3] X_8255681_SNP [dm6]	T	A	4.490e^-5	0.974	INTRON CG1632
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	4.492e^-5	0.974	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	4.764e^-5	0.974	INTRON SNF4Agamma
3R	25409024	3R_25409024_SNP [dm3] 3R_29583302_SNP [dm6]	C	A	4.778e^-5	0.974	INTERGENIC
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	4.790e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	11299625	3L_11299625_DEL [dm3] 3L_11306525_DEL [dm6]	AC	A	4.793e^-5	0.974	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13452723	3L_13452723_SNP [dm3] 3L_13459623_SNP [dm6]	A	T	4.797e^-5	0.974	INTRON CG10738
X	15128331	X_15128331_SNP [dm3] X_15234298_SNP [dm6]	T	C	4.897e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4582328	2L_4582328_DEL [dm3] 2L_4582328_DEL [dm6]	TACCAAGAAATT...	T	4.922e^-5	0.974	INTRON dp EXON CR43716
2R	17085461	2R_17085461_SNP [dm3] 2R_21197956_SNP [dm6]	C	A	4.993e^-5	0.974	INTRON Lapsyn
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	4.998e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	8622171	X_8622171_SNP [dm3] X_8728138_SNP [dm6]	C	A	5.024e^-5	0.974	INTERGENIC
X	15999934	X_15999934_INS [dm3] X_16105901_INS [dm6]	C	CT	5.035e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	15322780	2R_15322780_SNP [dm3] 2R_19435275_SNP [dm6]	A	T	5.194e^-5	0.974	INTRON Fak
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	5.304e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	17944370	3L_17944370_SNP [dm3] 3L_17951270_SNP [dm6]	C	T	5.627e^-5	0.974	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
X	3519415	X_3519415_SNP [dm3] X_3625382_SNP [dm6]	T	G	5.658e^-5	0.974	INTRON AstA-R1
2R	13059677	2R_13059677_DEL [dm3] 2R_17172172_DEL [dm6]	GGTATTTTGGC...	G	5.767e^-5	0.974	INTERGENIC
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	5.777e^-5	0.974	INTERGENIC
2L	15079495	2L_15079495_SNP [dm3] 2L_15079495_SNP [dm6]	A	G	5.913e^-5	0.974	INTRON CG15270	TF binding site BDTNP1_TFBS_twi
2L	17781046	2L_17781046_SNP [dm3] 2L_17781046_SNP [dm6]	C	G	5.972e^-5	0.974	INTERGENIC
3L	4318048	3L_4318048_SNP [dm3] 3L_4318048_SNP [dm6]	C	T	5.986e^-5	0.974	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	5.995e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	9795080	X_9795080_SNP [dm3] X_9901047_SNP [dm6]	G	A	6.063e^-5	0.974	INTERGENIC
3L	11795554	3L_11795554_SNP [dm3] 3L_11802454_SNP [dm6]	G	A	6.191e^-5	0.974	SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	6.206e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	15999824	X_15999824_SNP [dm3] X_16105791_SNP [dm6]	C	T	6.243e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	6.364e^-5	0.974	INTRON CG14082
X	10284911	X_10284911_SNP [dm3] X_10390878_SNP [dm6]	C	T	6.400e^-5	0.974	INTRON flw
2R	15322778	2R_15322778_SNP [dm3] 2R_19435273_SNP [dm6]	T	G	6.636e^-5	0.974	INTRON Fak
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	6.642e^-5	0.974	INTRON tok EXON snoRNA:Me18S-C1280
3L	19379987	3L_19379987_SNP [dm3] 3L_19386887_SNP [dm6]	A	T	6.705e^-5	0.974	UPSTREAM ms_3_76Ba INTRON CG32206
3L	18897328	3L_18897328_SNP [dm3] 3L_18904228_SNP [dm6]	G	A	6.710e^-5	0.974	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10132930	2R_10132930_SNP [dm3] 2R_14245425_SNP [dm6]	T	A	6.717e^-5	0.974	NON_SYNONYMOUS_CODING CG8503
X	17990065	X_17990065_SNP [dm3] X_18096032_SNP [dm6]	G	A	6.731e^-5	0.974	SYNONYMOUS_CODING RhoGAP16F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18485025	3R_18485025_SNP [dm3] 3R_22659303_SNP [dm6]	T	C	6.876e^-5	0.974	INTRON CG45058
X	8149713	X_8149713_SNP [dm3] X_8255680_SNP [dm6]	T	G	6.943e^-5	0.974	INTRON CG1632
3R	13175328	3R_13175328_SNP [dm3] 3R_17349606_SNP [dm6]	C	T	6.961e^-5	0.974	INTRON beat-IIa	TF binding site mE1_TFBS_inv
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	6.966e^-5	0.974	UTR_5_PRIME CG6841 UPSTREAM CSN1b
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	7.009e^-5	0.974	INTERGENIC
3R	19283797	3R_19283797_SNP [dm3] 3R_23458075_SNP [dm6]	G	A	7.077e^-5	0.974	INTRON CG4374
2R	6814935	2R_6814935_SNP [dm3] 2R_10927430_SNP [dm6]	G	T	7.138e^-5	0.974	INTERGENIC
3R	18582152	3R_18582152_SNP [dm3] 3R_22756430_SNP [dm6]	C	T	7.239e^-5	0.974	INTRON Usp12-46 & 1 other
X	15999808	X_15999808_SNP [dm3] X_16105775_SNP [dm6]	C	T	7.306e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	12169425	X_12169425_SNP [dm3] X_12275392_SNP [dm6]	C	T	7.372e^-5	0.974	DOWNSTREAM CG45603 INTRON Ten-a
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	7.383e^-5	0.974	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	20761330	3R_20761330_SNP [dm3] 3R_24935608_SNP [dm6]	G	A	7.395e^-5	0.974	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10334553	3L_10334553_SNP [dm3] 3L_10341453_SNP [dm6]	T	A	7.472e^-5	0.974	INTERGENIC
X	8096229	X_8096229_SNP [dm3] X_8202196_SNP [dm6]	G	A	7.568e^-5	0.974	INTRON sdt	TF binding site mE1_TFBS_inv
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	7.684e^-5	0.974	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	10193337	2R_10193337_SNP [dm3] 2R_14305832_SNP [dm6]	G	A	7.712e^-5	0.974	INTERGENIC

Showing 1 to 100 of 1,000 entries

Previous1 2 3 4 5…10Next

By genomic position
Variant impact
Gene name

pc_Tibia_Leg_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results