DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.296e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08904
In_3R_K	0.07978

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.3616	0.0685

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2261 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	4.705e^-8	0.088	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	1.390e^-6	0.681	INTRON GABA-B-R1
2R	17721197	2R_17721197_SNP [dm3] 2R_21833692_SNP [dm6]	C	T	1.817e^-6	0.681	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
X	17817546	X_17817546_SNP [dm3] X_17923513_SNP [dm6]	C	G	2.017e^-6	0.681	SYNONYMOUS_CODING CG6847 DOWNSTREAM Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	18978579	3R_18978579_SNP [dm3] 3R_23152857_SNP [dm6]	C	T	2.030e^-6	0.681	UTR_3_PRIME unk DOWNSTREAM unk
2L	10074588	2L_10074588_SNP [dm3] 2L_10074588_SNP [dm6]	T	A	2.285e^-6	0.681	INTRON CG44153
X	465384	X_465384_SNP [dm3] X_571351_SNP [dm6]	A	G	2.545e^-6	0.681	SPLICE_SITE_REGION Appl SYNONYMOUS_CODING Appl
3R	26752159	3R_26752159_SNP [dm3] 3R_30926437_SNP [dm6]	G	T	3.895e^-6	0.789	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	4.045e^-6	0.789	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3R	18978571	3R_18978571_SNP [dm3] 3R_23152849_SNP [dm6]	G	A	4.580e^-6	0.789	UTR_3_PRIME unk DOWNSTREAM unk
3R	14907243	3R_14907243_SNP [dm3] 3R_19081521_SNP [dm6]	T	C	4.643e^-6	0.789	INTRON cdi
3R	15850066	3R_15850066_SNP [dm3] 3R_20024344_SNP [dm6]	T	C	5.408e^-6	0.789	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	5.480e^-6	0.789	INTRON CngA	TF binding site mE1_TFBS_inv
2R	11988621	2R_11988621_SNP [dm3] 2R_16101116_SNP [dm6]	C	T	6.981e^-6	0.789	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
X	18451608	X_18451608_SNP [dm3] X_18557575_SNP [dm6]	G	T	9.189e^-6	0.789	INTRON Bx
3L	10247025	3L_10247025_SNP [dm3] 3L_10253925_SNP [dm6]	A	C	9.594e^-6	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23235845	3R_23235845_SNP [dm3] 3R_27410123_SNP [dm6]	A	T	1.000e^-5	0.789	INTRON side
2L	5296013	2L_5296013_SNP [dm3] 2L_5296013_SNP [dm6]	C	G	1.001e^-5	0.789	INTRON vri
3R	26494801	3R_26494801_SNP [dm3] 3R_30669079_SNP [dm6]	T	C	1.054e^-5	0.789	INTERGENIC
X	14863091	X_14863091_SNP [dm3] X_14969058_SNP [dm6]	C	T	1.081e^-5	0.789	INTRON eag
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	1.085e^-5	0.789	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	1.125e^-5	0.789	INTRON jvl
2L	19246806	2L_19246806_SNP [dm3] 2L_19246806_SNP [dm6]	C	T	1.179e^-5	0.789	INTERGENIC
X	14515417	X_14515417_SNP [dm3] X_14621384_SNP [dm6]	G	T	1.199e^-5	0.789	INTRON NetA
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	1.225e^-5	0.789	INTRON bnl
2R	14763843	2R_14763843_SNP [dm3] 2R_18876338_SNP [dm6]	T	C	1.236e^-5	0.789	INTERGENIC
3R	17018789	3R_17018789_SNP [dm3] 3R_21193067_SNP [dm6]	T	G	1.316e^-5	0.789	INTRON SNF4Agamma
3L	21339631	3L_21339631_SNP [dm3] 3L_21346531_SNP [dm6]	G	T	1.340e^-5	0.789	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	1968982	2R_1968982_SNP [dm3] 2R_6081477_SNP [dm6]	A	G	1.631e^-5	0.789	UPSTREAM CG14590 INTRON Ars2
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	1.663e^-5	0.789	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	1.765e^-5	0.789	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20816761	2L_20816761_SNP [dm3] 2L_20816761_SNP [dm6]	C	A	1.775e^-5	0.789	UPSTREAM CG33322 INTRON CheB38b
2R	9327961	2R_9327961_SNP [dm3] 2R_13440456_SNP [dm6]	A	T	1.790e^-5	0.789	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	1.798e^-5	0.789	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
3R	24819768	3R_24819768_SNP [dm3] 3R_28994046_SNP [dm6]	G	T	1.867e^-5	0.789	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14907240	3R_14907240_SNP [dm3] 3R_19081518_SNP [dm6]	C	A	2.011e^-5	0.789	INTRON cdi
3L	12376010	3L_12376010_SNP [dm3] 3L_12382910_SNP [dm6]	G	A	2.110e^-5	0.789	INTRON Ncc69
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	2.153e^-5	0.789	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2L	116764	2L_116764_SNP [dm3] 2L_116764_SNP [dm6]	T	G	2.227e^-5	0.789	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
3R	18581558	3R_18581558_SNP [dm3] 3R_22755836_SNP [dm6]	A	T	2.383e^-5	0.789	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	5725594	2L_5725594_SNP [dm3] 2L_5725594_SNP [dm6]	G	A	2.422e^-5	0.789	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18998636	2R_18998636_SNP [dm3] 2R_23111113_SNP [dm6]	A	T	2.586e^-5	0.789	EXON CR44781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21330738	3L_21330738_SNP [dm3] 3L_21337638_SNP [dm6]	C	T	2.647e^-5	0.789	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3R	17347131	3R_17347131_SNP [dm3] 3R_21521409_SNP [dm6]	C	G	2.665e^-5	0.789	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	13730345	2L_13730345_SNP [dm3] 2L_13730345_SNP [dm6]	C	A	2.688e^-5	0.789	INTERGENIC
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	2.738e^-5	0.789	INTERGENIC
3R	10961237	3R_10961237_SNP [dm3] 3R_15135515_SNP [dm6]	C	A	2.815e^-5	0.789	SYNONYMOUS_CODING CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20403856	3R_20403856_SNP [dm3] 3R_24578134_SNP [dm6]	T	C	2.978e^-5	0.789	UPSTREAM CG13624 INTRON CG13624
2L	13729601	2L_13729601_SNP [dm3] 2L_13729601_SNP [dm6]	C	T	3.023e^-5	0.789	INTERGENIC
X	14864392	X_14864392_SNP [dm3] X_14970359_SNP [dm6]	A	G	3.049e^-5	0.789	INTRON eag
3L	21339896	3L_21339896_SNP [dm3] 3L_21346796_SNP [dm6]	C	T	3.070e^-5	0.789	UTR_5_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	1256919	3L_1256919_SNP [dm3] 3L_1256919_SNP [dm6]	A	G	3.176e^-5	0.789	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	17935417	3R_17935417_SNP [dm3] 3R_22109695_SNP [dm6]	T	C	3.185e^-5	0.789	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	3.206e^-5	0.789	INTERGENIC
2R	17062936	2R_17062936_SNP [dm3] 2R_21175431_SNP [dm6]	G	A	3.210e^-5	0.789	UTR_5_PRIME Pu DOWNSTREAM Xpd	TF binding site mE1_TFBS_Trl
2L	15014526	2L_15014526_SNP [dm3] 2L_15014526_SNP [dm6]	A	G	3.229e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26815639	3R_26815639_SNP [dm3] 3R_30989917_SNP [dm6]	C	A	3.230e^-5	0.789	UTR_5_PRIME CG31008 INTRON 5-HT7
X	455460	X_455460_SNP [dm3] X_561427_SNP [dm6]	T	A	3.433e^-5	0.789	INTRON Appl
3R	20238739	3R_20238739_SNP [dm3] 3R_24413017_SNP [dm6]	G	T	3.458e^-5	0.789	INTRON nAChRalpha1
2L	13601201	2L_13601201_SNP [dm3] 2L_13601201_SNP [dm6]	T	C	3.567e^-5	0.789	INTRON kuz
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	3.576e^-5	0.789	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	17935365	3R_17935365_SNP [dm3] 3R_22109643_SNP [dm6]	A	T	3.613e^-5	0.789	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	17935439	3R_17935439_DEL [dm3] 3R_22109717_DEL [dm6]	CGAAATTGCTGT...	C	3.625e^-5	0.789	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	3.640e^-5	0.789	INTERGENIC
3L	10247030	3L_10247030_SNP [dm3] 3L_10253930_SNP [dm6]	T	C	3.641e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1263330	3L_1263330_SNP [dm3] 3L_1263330_SNP [dm6]	T	G	3.658e^-5	0.789	INTRON CG9134
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	3.712e^-5	0.789	INTERGENIC
X	455492	X_455492_SNP [dm3] X_561459_SNP [dm6]	C	A	3.725e^-5	0.789	INTRON Appl
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	3.728e^-5	0.789	INTERGENIC
2L	2659846	2L_2659846_SNP [dm3] 2L_2659846_SNP [dm6]	A	G	3.748e^-5	0.789	INTERGENIC
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	3.779e^-5	0.789	INTERGENIC
3R	7924520	3R_7924520_SNP [dm3] 3R_12098798_SNP [dm6]	T	A	3.862e^-5	0.789	INTRON dpr17
3R	24822107	3R_24822107_SNP [dm3] 3R_28996385_SNP [dm6]	A	G	3.880e^-5	0.789	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26495003	3R_26495003_SNP [dm3] 3R_30669281_SNP [dm6]	A	C	3.882e^-5	0.789	INTERGENIC
3R	26494999	3R_26494999_SNP [dm3] 3R_30669277_SNP [dm6]	G	T	3.887e^-5	0.789	INTERGENIC
3R	23125233	3R_23125233_SNP [dm3] 3R_27299511_SNP [dm6]	T	G	3.893e^-5	0.789	INTRON CG3339
2R	15316445	2R_15316445_SNP [dm3] 2R_19428940_SNP [dm6]	G	T	3.910e^-5	0.789	UTR_3_PRIME CalpA INTRON CalpA
3R	14907247	3R_14907247_SNP [dm3] 3R_19081525_SNP [dm6]	A	G	3.981e^-5	0.789	INTRON cdi
3L	21335515	3L_21335515_SNP [dm3] 3L_21342415_SNP [dm6]	C	T	4.009e^-5	0.789	SYNONYMOUS_CODING CG7324
3L	21330687	3L_21330687_SNP [dm3] 3L_21337587_SNP [dm6]	T	C	4.042e^-5	0.789	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3R	16661202	3R_16661202_SNP [dm3] 3R_20835480_SNP [dm6]	T	C	4.089e^-5	0.789	INTRON Synd
3R	14132074	3R_14132074_SNP [dm3] 3R_18306352_SNP [dm6]	G	C	4.101e^-5	0.789	UTR_3_PRIME PKD INTRON PKD
3R	24819321	3R_24819321_SNP [dm3] 3R_28993599_SNP [dm6]	A	G	4.130e^-5	0.789	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	4.193e^-5	0.789	INTERGENIC
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	4.226e^-5	0.789	INTRON bnl
2L	20267848	2L_20267848_SNP [dm3] 2L_20267848_SNP [dm6]	T	C	4.261e^-5	0.789	INTERGENIC
3R	17935369	3R_17935369_DEL [dm3] 3R_22109647_DEL [dm6]	ATTTA	A	4.356e^-5	0.789	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	4.439e^-5	0.789	INTRON 5-HT1A
3R	24100072	3R_24100072_SNP [dm3] 3R_28274350_SNP [dm6]	C	T	4.451e^-5	0.789	INTERGENIC
3L	10247026	3L_10247026_SNP [dm3] 3L_10253926_SNP [dm6]	A	T	4.594e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15850077	3R_15850077_SNP [dm3] 3R_20024355_SNP [dm6]	G	A	4.645e^-5	0.789	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	17727241	2R_17727241_SNP [dm3] 2R_21839736_SNP [dm6]	T	C	4.652e^-5	0.789	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18479942	X_18479942_SNP [dm3] X_18585909_SNP [dm6]	A	G	4.693e^-5	0.789	DOWNSTREAM CR43492 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14583755	X_14583755_SNP [dm3] X_14689722_SNP [dm6]	A	T	4.711e^-5	0.789	UTR_3_PRIME NetB
3R	24822149	3R_24822149_SNP [dm3] 3R_28996427_SNP [dm6]	A	T	4.718e^-5	0.789	INTRON wat	TF binding site BDTNP1_TFBS_twi
2R	19121474	2R_19121474_SNP [dm3] 2R_23233951_SNP [dm6]	G	A	4.785e^-5	0.789	DOWNSTREAM CG3092 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	4.894e^-5	0.789	INTRON Tgi
3R	19719397	3R_19719397_SNP [dm3] 3R_23893675_SNP [dm6]	T	G	4.910e^-5	0.789	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
2R	20627462	2R_20627462_SNP [dm3] 2R_24739939_SNP [dm6]	C	T	4.939e^-5	0.789	UPSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10050899	X_10050899_SNP [dm3] X_10156866_SNP [dm6]	C	T	4.954e^-5	0.789	INTRON CR44894
X	18183581	X_18183581_SNP [dm3] X_18289548_SNP [dm6]	G	A	4.955e^-5	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15177214	2L_15177214_SNP [dm3] 2L_15177214_SNP [dm6]	G	A	4.958e^-5	0.789	INTRON CG4168
2R	7401467	2R_7401467_SNP [dm3] 2R_11513962_SNP [dm6]	C	T	5.044e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	9795033	3L_9795033_SNP [dm3] 3L_9801933_SNP [dm6]	G	A	5.085e^-5	0.789	SYNONYMOUS_CODING Ilp3 INTRON CG32052	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24095761	3R_24095761_SNP [dm3] 3R_28270039_SNP [dm6]	T	C	5.128e^-5	0.789	INTERGENIC
X	14515419	X_14515419_SNP [dm3] X_14621386_SNP [dm6]	A	C	5.169e^-5	0.789	INTRON NetA
3L	12067740	3L_12067740_SNP [dm3] 3L_12074640_SNP [dm6]	G	A	5.286e^-5	0.789	INTRON Sema-5c
2L	221192	2L_221192_SNP [dm3] 2L_221192_SNP [dm6]	C	A	5.295e^-5	0.789	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11575268	3L_11575268_SNP [dm3] 3L_11582168_SNP [dm6]	A	C	5.298e^-5	0.789	UTR_5_PRIME CG33269 DOWNSTREAM CG32086
2L	5908012	2L_5908012_SNP [dm3] 2L_5908012_SNP [dm6]	A	C	5.314e^-5	0.789	DOWNSTREAM CG14000 INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	20432540	2R_20432540_INS [dm3] 2R_24545017_INS [dm6]	G	GATCAGCAGTAGCAG...	5.336e^-5	0.789	INTRON CG4622 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7439286	2R_7439286_SNP [dm3] 2R_11551781_SNP [dm6]	C	T	5.421e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18183584	X_18183584_SNP [dm3] X_18289551_SNP [dm6]	T	C	5.520e^-5	0.789	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	5.524e^-5	0.789	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3R	26760371	3R_26760371_SNP [dm3] 3R_30934649_SNP [dm6]	G	C	5.554e^-5	0.789	DOWNSTREAM CG15549 INTERGENIC
X	2328767	X_2328767_SNP [dm3] X_2434734_SNP [dm6]	T	C	5.556e^-5	0.789	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14569611	2L_14569611_SNP [dm3] 2L_14569611_SNP [dm6]	C	T	5.596e^-5	0.789	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20130301	2L_20130301_SNP [dm3] 2L_20130301_SNP [dm6]	A	G	5.598e^-5	0.789	INTERGENIC
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	5.651e^-5	0.789	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	16770678	3R_16770678_SNP [dm3] 3R_20944956_SNP [dm6]	A	G	5.712e^-5	0.789	INTRON CG31191
2L	19455151	2L_19455151_SNP [dm3] 2L_19455151_SNP [dm6]	G	C	5.737e^-5	0.789	UPSTREAM CG10026 INTRON CG10026
3L	7729264	3L_7729264_SNP [dm3] 3L_7736164_SNP [dm6]	G	T	5.800e^-5	0.789	SYNONYMOUS_CODING Snmp2 INTRON CG32373
2R	16496552	2R_16496552_SNP [dm3] 2R_20609047_SNP [dm6]	T	C	5.905e^-5	0.789	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15454966	3R_15454966_SNP [dm3] 3R_19629244_SNP [dm6]	A	C	5.973e^-5	0.789	INTRON CG6231	TF binding site mE1_TFBS_kn
3R	20238775	3R_20238775_SNP [dm3] 3R_24413053_SNP [dm6]	C	A	5.999e^-5	0.789	INTRON nAChRalpha1
2R	9767190	2R_9767190_SNP [dm3] 2R_13879685_SNP [dm6]	C	G	6.004e^-5	0.789	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9767196	2R_9767196_SNP [dm3] 2R_13879691_SNP [dm6]	A	G	6.004e^-5	0.789	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	6.016e^-5	0.789	INTERGENIC
X	16112964	X_16112964_SNP [dm3] X_16218931_SNP [dm6]	A	C	6.024e^-5	0.789	INTERGENIC
3R	16288966	3R_16288966_SNP [dm3] 3R_20463244_SNP [dm6]	G	T	6.078e^-5	0.789	INTRON Gfrl
2L	6270368	2L_6270368_SNP [dm3] 2L_6270368_SNP [dm6]	C	T	6.092e^-5	0.789	UPSTREAM CR42735 INTRON Ddr
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	6.118e^-5	0.789	INTERGENIC
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	6.143e^-5	0.789	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5532992	X_5532992_SNP [dm3] X_5638959_SNP [dm6]	T	C	6.144e^-5	0.789	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4951402	3L_4951402_DEL [dm3] 3L_4951402_DEL [dm6]	ACA	A	6.258e^-5	0.789	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	1323098	2L_1323098_SNP [dm3] 2L_1323098_SNP [dm6]	C	T	6.262e^-5	0.789	INTERGENIC
3L	11458238	3L_11458238_SNP [dm3] 3L_11465138_SNP [dm6]	G	A	6.398e^-5	0.789	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458242	3L_11458242_SNP [dm3] 3L_11465142_SNP [dm6]	A	T	6.398e^-5	0.789	INTRON CG6140	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
2R	16268067	2R_16268067_SNP [dm3] 2R_20380562_SNP [dm6]	G	A	6.411e^-5	0.789	INTERGENIC
2L	117108	2L_117108_SNP [dm3] 2L_117108_SNP [dm6]	C	T	6.458e^-5	0.789	UTR_3_PRIME CG4822 UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	6.476e^-5	0.789	INTERGENIC
2L	18901519	2L_18901519_SNP [dm3] 2L_18901519_SNP [dm6]	T	C	6.484e^-5	0.789	INTERGENIC
X	11333498	X_11333498_SNP [dm3] X_11439465_SNP [dm6]	G	T	6.563e^-5	0.789	INTRON Evi5
3R	26815670	3R_26815670_SNP [dm3] 3R_30989948_SNP [dm6]	T	A	6.563e^-5	0.789	UTR_5_PRIME CG31008 INTRON 5-HT7
2L	4156555	2L_4156555_SNP [dm3] 2L_4156555_SNP [dm6]	G	T	6.652e^-5	0.789	INTERGENIC
3R	17544616	3R_17544616_SNP [dm3] 3R_21718894_SNP [dm6]	G	A	6.653e^-5	0.789	SYNONYMOUS_CODING CG31176	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19589188	3R_19589188_SNP [dm3] 3R_23763466_SNP [dm6]	C	A	6.843e^-5	0.789	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	6.878e^-5	0.789	INTRON Tgi
2R	19475561	2R_19475561_SNP [dm3] 2R_23588038_SNP [dm6]	T	G	7.001e^-5	0.789	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	112460	2L_112460_SNP [dm3] 2L_112460_SNP [dm6]	T	C	7.010e^-5	0.789	INTRON Sam-S
2L	5725497	2L_5725497_SNP [dm3] 2L_5725497_SNP [dm6]	C	A	7.135e^-5	0.789	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1969063	2R_1969063_SNP [dm3] 2R_6081558_SNP [dm6]	T	C	7.163e^-5	0.789	UPSTREAM CG14590 INTRON Ars2
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	7.194e^-5	0.789	INTERGENIC
2R	17063577	2R_17063577_SNP [dm3] 2R_21176072_SNP [dm6]	T	G	7.245e^-5	0.789	INTRON Pu
3R	26628771	3R_26628771_SNP [dm3] 3R_30803049_SNP [dm6]	A	G	7.362e^-5	0.789	INTRON wts	TF binding site BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	13578415	2L_13578415_SNP [dm3] 2L_13578415_SNP [dm6]	T	G	7.389e^-5	0.789	INTRON kuz
2L	5725469	2L_5725469_SNP [dm3] 2L_5725469_SNP [dm6]	G	A	7.412e^-5	0.789	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	7.428e^-5	0.789	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	5719251	3L_5719251_SNP [dm3] 3L_5726151_SNP [dm6]	C	T	7.430e^-5	0.789	INTRON sif	TF binding site mE1_TFBS_Trl
2L	1210384	2L_1210384_SNP [dm3] 2L_1210384_SNP [dm6]	G	A	7.449e^-5	0.789	INTERGENIC
X	459876	X_459876_SNP [dm3] X_565843_SNP [dm6]	C	T	7.451e^-5	0.789	INTRON Appl
3L	1539145	3L_1539145_SNP [dm3] 3L_1539145_SNP [dm6]	C	T	7.452e^-5	0.789	INTRON CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1539163	3L_1539163_SNP [dm3] 3L_1539163_SNP [dm6]	T	G	7.452e^-5	0.789	INTRON CG7852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7226786	2R_7226786_SNP [dm3] 2R_11339281_SNP [dm6]	G	T	7.457e^-5	0.789	SYNONYMOUS_CODING zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	5295722	2L_5295722_SNP [dm3] 2L_5295722_SNP [dm6]	A	G	7.537e^-5	0.789	INTRON vri
3R	20238752	3R_20238752_SNP [dm3] 3R_24413030_SNP [dm6]	A	T	7.626e^-5	0.789	INTRON nAChRalpha1
3R	14907275	3R_14907275_SNP [dm3] 3R_19081553_SNP [dm6]	T	C	7.666e^-5	0.789	INTRON cdi
2L	10041286	2L_10041286_SNP [dm3] 2L_10041286_SNP [dm6]	A	T	7.715e^-5	0.789	INTERGENIC
2R	7444795	2R_7444795_SNP [dm3] 2R_11557290_SNP [dm6]	G	C	7.731e^-5	0.789	INTERGENIC
2R	16875221	2R_16875221_SNP [dm3] 2R_20987716_SNP [dm6]	C	G	7.793e^-5	0.789	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10500728	2L_10500728_SNP [dm3] 2L_10500728_SNP [dm6]	T	A	7.833e^-5	0.789	INTRON Myo31DF
3L	10247063	3L_10247063_SNP [dm3] 3L_10253963_SNP [dm6]	T	C	7.851e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15650447	3R_15650447_SNP [dm3] 3R_19824725_SNP [dm6]	T	C	7.856e^-5	0.789	INTRON bnl
3R	23180609	3R_23180609_SNP [dm3] 3R_27354887_SNP [dm6]	G	C	7.869e^-5	0.789	INTRON CG42534
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	7.885e^-5	0.789	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20973469	3R_20973469_SNP [dm3] 3R_25147747_SNP [dm6]	G	A	7.888e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2L	4156543	2L_4156543_SNP [dm3] 2L_4156543_SNP [dm6]	G	T	7.957e^-5	0.789	INTERGENIC
2L	19419422	2L_19419422_SNP [dm3] 2L_19419422_SNP [dm6]	A	G	7.969e^-5	0.789	SYNONYMOUS_CODING lectin-37Db DOWNSTREAM lectin-37Da INTRON Pax
3R	19439186	3R_19439186_SNP [dm3] 3R_23613464_SNP [dm6]	T	A	8.009e^-5	0.789	INTRON CG31145
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	8.021e^-5	0.789	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15311653	3R_15311653_SNP [dm3] 3R_19485931_SNP [dm6]	A	T	8.086e^-5	0.789	SYNONYMOUS_CODING Dys
2R	18067506	2R_18067506_SNP [dm3] 2R_22180001_SNP [dm6]	T	C	8.268e^-5	0.789	INTRON CG11170 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20130393	2L_20130393_SNP [dm3] 2L_20130393_SNP [dm6]	T	C	8.278e^-5	0.789	INTERGENIC
3R	15032559	3R_15032559_SNP [dm3] 3R_19206837_SNP [dm6]	G	A	8.281e^-5	0.789	INTERGENIC
3L	1252985	3L_1252985_SNP [dm3] 3L_1252985_SNP [dm6]	T	C	8.307e^-5	0.789	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18625269	3R_18625269_SNP [dm3] 3R_22799547_SNP [dm6]	A	C	8.410e^-5	0.789	INTERGENIC
2L	10052556	2L_10052556_SNP [dm3] 2L_10052556_SNP [dm6]	A	T	8.441e^-5	0.789	DOWNSTREAM CR44874 INTERGENIC
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	8.455e^-5	0.789	INTRON tok EXON snoRNA:Me18S-C1280
3R	19586350	3R_19586350_SNP [dm3] 3R_23760628_SNP [dm6]	G	T	8.542e^-5	0.789	UPSTREAM CG10219 DOWNSTREAM CG10217 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15311682	3R_15311682_SNP [dm3] 3R_19485960_SNP [dm6]	C	G	8.550e^-5	0.789	NON_SYNONYMOUS_CODING Dys
3L	21335707	3L_21335707_SNP [dm3] 3L_21342607_SNP [dm6]	G	A	8.567e^-5	0.789	INTRON CG7324
3R	26494838	3R_26494838_SNP [dm3] 3R_30669116_SNP [dm6]	C	A	8.581e^-5	0.789	INTERGENIC
2L	19564425	2L_19564425_SNP [dm3] 2L_19564425_SNP [dm6]	G	A	8.641e^-5	0.789	NON_SYNONYMOUS_CODING CG13078	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4673533	3L_4673533_SNP [dm3] 3L_4673533_SNP [dm6]	G	A	8.644e^-5	0.789	INTRON axo	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4431399	2R_4431399_SNP [dm3] 2R_8543894_SNP [dm6]	T	G	8.650e^-5	0.789	UPSTREAM CR44279 INTERGENIC
2L	4156572	2L_4156572_SNP [dm3] 2L_4156572_SNP [dm6]	T	G	8.683e^-5	0.789	INTERGENIC
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	8.693e^-5	0.789	INTERGENIC
2R	16401116	2R_16401116_SNP [dm3] 2R_20513611_SNP [dm6]	T	C	8.705e^-5	0.789	UPSTREAM CG13426 INTERGENIC
X	5533482	X_5533482_SNP [dm3] X_5639449_SNP [dm6]	A	G	8.713e^-5	0.789	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
X	14861458	X_14861458_SNP [dm3] X_14967425_SNP [dm6]	T	A	8.760e^-5	0.789	INTRON eag
2L	5725480	2L_5725480_SNP [dm3] 2L_5725480_SNP [dm6]	A	T	8.797e^-5	0.789	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1969848	2R_1969848_SNP [dm3] 2R_6082343_SNP [dm6]	G	A	8.827e^-5	0.789	SYNONYMOUS_CODING Ars2 UTR_3_PRIME Ars2	TF binding site mE1_TFBS_sens
3L	8664990	3L_8664990_SNP [dm3] 3L_8671890_SNP [dm6]	A	G	8.887e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	18581576	3R_18581576_SNP [dm3] 3R_22755854_SNP [dm6]	T	C	8.973e^-5	0.789	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16318739	2L_16318739_DEL [dm3] 2L_16318739_DEL [dm6]	TT	T	9.032e^-5	0.789	INTRON cact
X	21384283	X_21384283_SNP [dm3] X_21513256_SNP [dm6]	A	G	9.072e^-5	0.789	INTRON CR45082
3L	21348830	3L_21348830_SNP [dm3] 3L_21355730_SNP [dm6]	G	A	9.163e^-5	0.789	SYNONYMOUS_CODING CG12971 DOWNSTREAM CG32436	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15311626	3R_15311626_SNP [dm3] 3R_19485904_SNP [dm6]	A	G	9.209e^-5	0.789	SYNONYMOUS_CODING Dys
3R	18337241	3R_18337241_SNP [dm3] 3R_22511519_SNP [dm6]	G	A	9.252e^-5	0.789	INTRON Octbeta1R	regulatory region REDfly_CRMs
X	17362177	X_17362177_SNP [dm3] X_17468144_SNP [dm6]	T	C	9.254e^-5	0.789	INTRON CG43658
3L	21335557	3L_21335557_SNP [dm3] 3L_21342457_SNP [dm6]	A	T	9.270e^-5	0.789	SPLICE_SITE_REGION CG7324 INTRON CG7324
2R	8849754	2R_8849754_INS [dm3] 2R_12962249_INS [dm6]	T	TCTT	9.276e^-5	0.789	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	385679	2L_385679_SNP [dm3] 2L_385679_SNP [dm6]	T	A	9.354e^-5	0.789	INTRON al
3R	14510315	3R_14510315_SNP [dm3] 3R_18684593_SNP [dm6]	C	A	9.365e^-5	0.789	SYNONYMOUS_CODING CG7708
2L	1595841	2L_1595841_SNP [dm3] 2L_1595841_SNP [dm6]	A	T	9.377e^-5	0.789	INTRON haf & 1 other
2L	5725494	2L_5725494_SNP [dm3] 2L_5725494_SNP [dm6]	C	T	9.396e^-5	0.789	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5250230	2R_5250230_SNP [dm3] 2R_9362725_SNP [dm6]	C	T	9.398e^-5	0.789	SYNONYMOUS_CODING CG12158 INTRON CG13954	TF binding site mE1_TFBS_inv
3L	18573428	3L_18573428_SNP [dm3] 3L_18580328_SNP [dm6]	T	A	9.457e^-5	0.789	INTERGENIC
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	9.480e^-5	0.789	INTRON CG42534
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	9.598e^-5	0.789	INTRON CG43174
X	459814	X_459814_SNP [dm3] X_565781_SNP [dm6]	T	C	9.661e^-5	0.789	INTRON Appl
3R	23546613	3R_23546613_SNP [dm3] 3R_27720891_SNP [dm6]	A	G	9.662e^-5	0.789	INTERGENIC
3L	9546615	3L_9546615_SNP [dm3] 3L_9553515_SNP [dm6]	C	T	9.665e^-5	0.789	SYNONYMOUS_CODING CG42673
3R	18468957	3R_18468957_SNP [dm3] 3R_22643235_SNP [dm6]	T	C	9.677e^-5	0.789	INTRON CG45058
3R	10595925	3R_10595925_SNP [dm3] 3R_14770203_SNP [dm6]	C	T	9.752e^-5	0.789	INTRON jvl
3R	5151458	3R_5151458_SNP [dm3] 3R_9325736_SNP [dm6]	A	G	9.754e^-5	0.789	INTRON CG8861
3R	20238766	3R_20238766_SNP [dm3] 3R_24413044_SNP [dm6]	T	G	9.770e^-5	0.789	INTRON nAChRalpha1
3R	24822112	3R_24822112_SNP [dm3] 3R_28996390_SNP [dm6]	T	G	9.864e^-5	0.789	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	21054138	2L_21054138_SNP [dm3] 2L_21054138_SNP [dm6]	T	C	9.886e^-5	0.789	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8330528	2L_8330528_SNP [dm3] 2L_8330528_SNP [dm6]	A	G	9.949e^-5	0.789	INTRON CG14275
3R	2870912	3R_2870912_SNP [dm3] 3R_7045190_SNP [dm6]	C	A	9.968e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14510303	3R_14510303_SNP [dm3] 3R_18684581_SNP [dm6]	G	T	9.979e^-5	0.789	SYNONYMOUS_CODING CG7708
2R	17720999	2R_17720999_SNP [dm3] 2R_21833494_SNP [dm6]	T	A	1.005e^-4	0.789	NON_SYNONYMOUS_CODING CG34040 DOWNSTREAM CG4363
3R	24578408	3R_24578408_SNP [dm3] 3R_28752686_SNP [dm6]	A	C	1.006e^-4	0.789	INTERGENIC
2R	5229536	2R_5229536_SNP [dm3] 2R_9342031_SNP [dm6]	C	T	1.007e^-4	0.789	INTRON CG13954 & 1 other
3R	19719409	3R_19719409_SNP [dm3] 3R_23893687_SNP [dm6]	A	C	1.012e^-4	0.789	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
X	9235897	X_9235897_SNP [dm3] X_9341864_SNP [dm6]	G	T	1.016e^-4	0.789	INTRON CG34449
3L	8665011	3L_8665011_SNP [dm3] 3L_8671911_SNP [dm6]	T	A	1.016e^-4	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	10599908	2R_10599908_SNP [dm3] 2R_14712403_SNP [dm6]	G	T	1.018e^-4	0.789	INTRON mspo
X	17362189	X_17362189_INS [dm3] X_17468156_INS [dm6]	T	CGCCATTCCCCATTC...	1.032e^-4	0.789	INTRON CG43658
X	17362206	X_17362206_SNP [dm3] X_17468173_SNP [dm6]	C	T	1.032e^-4	0.789	INTRON CG43658
2L	10041256	2L_10041256_SNP [dm3] 2L_10041256_SNP [dm6]	T	C	1.033e^-4	0.789	INTERGENIC
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	1.034e^-4	0.789	INTRON pnt
3R	14510312	3R_14510312_SNP [dm3] 3R_18684590_SNP [dm6]	A	T	1.035e^-4	0.789	SYNONYMOUS_CODING CG7708
2R	20469297	2R_20469297_DEL [dm3] 2R_24581774_DEL [dm6]	CA	C	1.042e^-4	0.789	UTR_5_PRIME pio INTRON pio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	1.044e^-4	0.789	INTRON CG14082
3R	27172443	3R_27172443_SNP [dm3] 3R_31346721_SNP [dm6]	G	C	1.044e^-4	0.789	INTRON CG34347
3L	9272066	3L_9272066_SNP [dm3] 3L_9278966_SNP [dm6]	G	A	1.048e^-4	0.789	INTRON GluRIB
3R	8567259	3R_8567259_SNP [dm3] 3R_12741537_SNP [dm6]	C	G	1.051e^-4	0.789	DOWNSTREAM CG5999 & 1 other INTERGENIC
3L	10090925	3L_10090925_SNP [dm3] 3L_10097825_SNP [dm6]	G	A	1.053e^-4	0.789	SYNONYMOUS_CODING CG42825 INTRON dpr6
2L	4156517	2L_4156517_SNP [dm3] 2L_4156517_SNP [dm6]	G	A	1.069e^-4	0.789	INTERGENIC
3L	6184034	3L_6184034_SNP [dm3] 3L_6190934_SNP [dm6]	G	A	1.071e^-4	0.789	NON_SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5216878	3R_5216878_SNP [dm3] 3R_9391156_SNP [dm6]	T	C	1.074e^-4	0.789	INTRON FER
2R	16496567	2R_16496567_SNP [dm3] 2R_20609062_SNP [dm6]	T	G	1.074e^-4	0.789	SYNONYMOUS_CODING Hil	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21335734	3L_21335734_SNP [dm3] 3L_21342634_SNP [dm6]	C	G	1.082e^-4	0.789	INTRON CG7324
2R	11989343	2R_11989343_SNP [dm3] 2R_16101838_SNP [dm6]	T	C	1.084e^-4	0.789	NON_SYNONYMOUS_CODING CG8414 UPSTREAM Rho1	TF binding site BDTNP1_TFBS_dl
X	12932154	X_12932154_SNP [dm3] X_13038121_SNP [dm6]	G	A	1.085e^-4	0.789	INTRON rad
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	1.093e^-4	0.789	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	585073	2L_585073_SNP [dm3] 2L_585073_SNP [dm6]	G	A	1.095e^-4	0.789	INTRON Gsc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	1.098e^-4	0.789	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18152799	2L_18152799_DEL [dm3] 2L_18152799_DEL [dm6]	TGAAAATATATTTT...	C	1.103e^-4	0.789	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	8966947	X_8966947_SNP [dm3] X_9072914_SNP [dm6]	A	T	1.105e^-4	0.789	NON_SYNONYMOUS_CODING CG44325 INTRON CG44325
X	2776567	X_2776567_SNP [dm3] X_2882534_SNP [dm6]	C	T	1.108e^-4	0.789	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	26805042	3R_26805042_SNP [dm3] 3R_30979320_SNP [dm6]	G	T	1.114e^-4	0.79	INTRON 5-HT7
2L	15289837	2L_15289837_SNP [dm3] 2L_15289837_SNP [dm6]	C	T	1.123e^-4	0.79	INTERGENIC
3R	18978643	3R_18978643_SNP [dm3] 3R_23152921_SNP [dm6]	C	T	1.130e^-4	0.79	UTR_3_PRIME unk DOWNSTREAM unk
2R	17720995	2R_17720995_SNP [dm3] 2R_21833490_SNP [dm6]	A	G	1.130e^-4	0.79	SYNONYMOUS_CODING CG34040 DOWNSTREAM CG4363
2L	15379546	2L_15379546_SNP [dm3] 2L_15379546_SNP [dm6]	A	G	1.130e^-4	0.79	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4156566	2L_4156566_SNP [dm3] 2L_4156566_SNP [dm6]	T	A	1.147e^-4	0.796	INTERGENIC
2R	19516388	2R_19516388_SNP [dm3] 2R_23628865_SNP [dm6]	C	T	1.149e^-4	0.796	INTERGENIC
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	1.151e^-4	0.796	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3R	13415677	3R_13415677_SNP [dm3] 3R_17589955_SNP [dm6]	C	A	1.173e^-4	0.798	INTERGENIC
3R	18984007	3R_18984007_SNP [dm3] 3R_23158285_SNP [dm6]	G	C	1.173e^-4	0.798	SYNONYMOUS_CODING VhaAC39-2 UPSTREAM unk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_sens
3R	17067009	3R_17067009_SNP [dm3] 3R_21241287_SNP [dm6]	T	A	1.175e^-4	0.798	INTERGENIC	regulatory region REDfly_CRMs
2R	17530846	2R_17530846_SNP [dm3] 2R_21643341_SNP [dm6]	C	A	1.182e^-4	0.798	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18193030	2R_18193030_SNP [dm3] 2R_22305525_SNP [dm6]	C	T	1.184e^-4	0.798	INTRON wdp
2R	15316609	2R_15316609_SNP [dm3] 2R_19429104_SNP [dm6]	T	A	1.194e^-4	0.798	DOWNSTREAM CalpA INTRON CalpA
2L	13822924	2L_13822924_SNP [dm3] 2L_13822924_SNP [dm6]	C	T	1.206e^-4	0.798	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14862118	X_14862118_SNP [dm3] X_14968085_SNP [dm6]	A	T	1.212e^-4	0.798	INTRON eag
X	14862460	X_14862460_SNP [dm3] X_14968427_SNP [dm6]	A	G	1.212e^-4	0.798	INTRON eag
2L	4156535	2L_4156535_SNP [dm3] 2L_4156535_SNP [dm6]	C	T	1.221e^-4	0.798	INTERGENIC
2R	15535178	2R_15535178_SNP [dm3] 2R_19647673_SNP [dm6]	G	C	1.221e^-4	0.798	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8582177	2L_8582177_SNP [dm3] 2L_8582177_SNP [dm6]	A	G	1.225e^-4	0.798	INTRON Sema-1a
2L	10056646	2L_10056646_SNP [dm3] 2L_10056646_SNP [dm6]	G	T	1.229e^-4	0.798	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15316572	2R_15316572_SNP [dm3] 2R_19429067_SNP [dm6]	A	T	1.230e^-4	0.798	DOWNSTREAM CalpA INTRON CalpA
3L	15261587	3L_15261587_SNP [dm3] 3L_15268487_SNP [dm6]	A	T	1.238e^-4	0.798	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20818325	2L_20818325_SNP [dm3] 2L_20818325_SNP [dm6]	T	C	1.243e^-4	0.798	NON_SYNONYMOUS_CODING CheB38a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5927053	3L_5927053_SNP [dm3] 3L_5933953_SNP [dm6]	G	A	1.248e^-4	0.798	SYNONYMOUS_CODING CG33993
2R	9763359	2R_9763359_SNP [dm3] 2R_13875854_SNP [dm6]	C	T	1.248e^-4	0.798	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
2R	16938611	2R_16938611_SNP [dm3] 2R_21051106_SNP [dm6]	C	A	1.251e^-4	0.798	SYNONYMOUS_CODING shg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19492492	2R_19492492_SNP [dm3] 2R_23604969_SNP [dm6]	G	A	1.252e^-4	0.798	DOWNSTREAM CG17662 INTRON CG17664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17883389	3R_17883389_SNP [dm3] 3R_22057667_SNP [dm6]	A	G	1.252e^-4	0.798	INTRON how	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25771085	3R_25771085_SNP [dm3] 3R_29945363_SNP [dm6]	T	C	1.254e^-4	0.798	SPLICE_SITE_REGION CG15523 INTRON CG15523
2R	13447728	2R_13447728_SNP [dm3] 2R_17560223_SNP [dm6]	T	C	1.256e^-4	0.798	INTRON Klp54D
3R	24818665	3R_24818665_INS [dm3] 3R_28992943_INS [dm6]	G	GT	1.258e^-4	0.798	DOWNSTREAM wat INTERGENIC
2R	11989315	2R_11989315_SNP [dm3] 2R_16101810_SNP [dm6]	A	T	1.260e^-4	0.798	UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl
3R	16672712	3R_16672712_SNP [dm3] 3R_20846990_SNP [dm6]	G	A	1.287e^-4	0.806	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21464890	3R_21464890_SNP [dm3] 3R_25639168_SNP [dm6]	T	G	1.298e^-4	0.806	UPSTREAM jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2R	9767319	2R_9767319_SNP [dm3] 2R_13879814_SNP [dm6]	G	A	1.306e^-4	0.806	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19039146	2R_19039146_DEL [dm3] 2R_23151623_DEL [dm6]	CCTACTGGACGAC...	C	1.314e^-4	0.806	INTERGENIC
3R	16770793	3R_16770793_SNP [dm3] 3R_20945071_SNP [dm6]	T	A	1.315e^-4	0.806	INTRON CG31191	TF binding site mE1_TFBS_cad
X	17362533	X_17362533_INS [dm3] X_17468500_INS [dm6]	G	GGGTTACACACAAAG...	1.317e^-4	0.806	INTRON CG43658
3R	20788312	3R_20788312_SNP [dm3] 3R_24962590_SNP [dm6]	G	T	1.318e^-4	0.806	INTERGENIC
3L	8665170	3L_8665170_SNP [dm3] 3L_8672070_SNP [dm6]	G	T	1.322e^-4	0.806	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	16318114	3R_16318114_SNP [dm3] 3R_20492392_SNP [dm6]	C	T	1.323e^-4	0.806	INTERGENIC
2L	3584764	2L_3584764_SNP [dm3] 2L_3584764_SNP [dm6]	G	C	1.323e^-4	0.806	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21464892	3R_21464892_SNP [dm3] 3R_25639170_SNP [dm6]	C	A	1.324e^-4	0.806	UPSTREAM jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	10996102	3R_10996102_SNP [dm3] 3R_15170380_SNP [dm6]	A	G	1.324e^-4	0.806	DOWNSTREAM Mf INTRON Gyc88E
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	1.344e^-4	0.812	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
3R	19719411	3R_19719411_SNP [dm3] 3R_23893689_SNP [dm6]	A	C	1.349e^-4	0.812	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
3R	19719416	3R_19719416_SNP [dm3] 3R_23893694_SNP [dm6]	A	G	1.349e^-4	0.812	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
3R	15993484	3R_15993484_SNP [dm3] 3R_20167762_SNP [dm6]	G	A	1.359e^-4	0.812	INTERGENIC
2R	10997399	2R_10997399_SNP [dm3] 2R_15109894_SNP [dm6]	A	T	1.361e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7439884	2R_7439884_SNP [dm3] 2R_11552379_SNP [dm6]	T	A	1.362e^-4	0.812	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12023886	2R_12023886_SNP [dm3] 2R_16136381_SNP [dm6]	C	T	1.365e^-4	0.812	INTRON spin
2R	1891657	2R_1891657_SNP [dm3] 2R_6004152_SNP [dm6]	A	C	1.376e^-4	0.812	INTRON Src42A
2R	16109318	2R_16109318_SNP [dm3] 2R_20221813_SNP [dm6]	T	G	1.376e^-4	0.812	EXON CR45423
3R	25162333	3R_25162333_SNP [dm3] 3R_29336611_SNP [dm6]	T	C	1.379e^-4	0.812	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21464872	3R_21464872_SNP [dm3] 3R_25639150_SNP [dm6]	C	T	1.391e^-4	0.812	UPSTREAM jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	21464894	3R_21464894_SNP [dm3] 3R_25639172_SNP [dm6]	A	G	1.391e^-4	0.812	UPSTREAM jigr1 INTRON jigr1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
3R	8565644	3R_8565644_SNP [dm3] 3R_12739922_SNP [dm6]	T	C	1.392e^-4	0.812	SYNONYMOUS_CODING CG5724
X	18464492	X_18464492_SNP [dm3] X_18570459_SNP [dm6]	C	T	1.408e^-4	0.814	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1249505	3L_1249505_SNP [dm3] 3L_1249505_SNP [dm6]	G	A	1.409e^-4	0.814	SYNONYMOUS_CODING Sac1	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	10599883	2R_10599883_INS [dm3] 2R_14712378_INS [dm6]	C	CCC	1.425e^-4	0.814	INTRON mspo
3R	26303701	3R_26303701_SNP [dm3] 3R_30477979_SNP [dm6]	C	A	1.427e^-4	0.814	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5725597	2L_5725597_SNP [dm3] 2L_5725597_SNP [dm6]	C	T	1.428e^-4	0.814	DOWNSTREAM CG14006 INTRON CG11030	TF binding site mE1_TFBS_HSA
3R	26001227	3R_26001227_SNP [dm3] 3R_30175505_SNP [dm6]	G	A	1.429e^-4	0.814	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3R	26948214	3R_26948214_SNP [dm3] 3R_31122492_SNP [dm6]	G	A	1.435e^-4	0.814	DOWNSTREAM Prosalpha3T INTERGENIC
2R	2146618	2R_2146618_SNP [dm3] 2R_6259113_SNP [dm6]	G	A	1.435e^-4	0.814	INTERGENIC	transposable element FlyBase
3L	9356720	3L_9356720_SNP [dm3] 3L_9363620_SNP [dm6]	A	G	1.437e^-4	0.814	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
3R	13945432	3R_13945432_SNP [dm3] 3R_18119710_SNP [dm6]	T	G	1.448e^-4	0.814	INTRON sr
2L	10056524	2L_10056524_SNP [dm3] 2L_10056524_SNP [dm6]	G	C	1.449e^-4	0.814	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	365304	X_365304_SNP [dm3] X_471271_SNP [dm6]	C	A	1.452e^-4	0.814	UTR_3_PRIME ebo UPSTREAM CG32816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
2L	116880	2L_116880_DEL [dm3] 2L_116880_DEL [dm6]	CACACCCAGAAAAATTATGA...	C	1.460e^-4	0.814	UPSTREAM CG13694 DOWNSTREAM CG4822 INTRON CG11455	transposable element FlyBase
2L	122643	2L_122643_SNP [dm3] 2L_122643_SNP [dm6]	G	T	1.460e^-4	0.814	UTR_3_PRIME CG3164 UPSTREAM CG4822 & 1 other INTRON CG11455	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	7915452	3R_7915452_SNP [dm3] 3R_12089730_SNP [dm6]	T	A	1.466e^-4	0.814	INTRON CG14741
2R	7938227	2R_7938227_SNP [dm3] 2R_12050722_SNP [dm6]	G	A	1.467e^-4	0.814	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
2L	14981225	2L_14981225_SNP [dm3] 2L_14981225_SNP [dm6]	A	G	1.468e^-4	0.814	INTRON mol
2L	1665388	2L_1665388_SNP [dm3] 2L_1665388_SNP [dm6]	T	C	1.477e^-4	0.814	INTRON chinmo
3L	12810773	3L_12810773_SNP [dm3] 3L_12817673_SNP [dm6]	G	A	1.478e^-4	0.814	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	1.484e^-4	0.815	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	16113302	2R_16113302_SNP [dm3] 2R_20225797_SNP [dm6]	T	G	1.488e^-4	0.815	INTERGENIC
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	1.491e^-4	0.815	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17182087	2R_17182087_SNP [dm3] 2R_21294582_SNP [dm6]	C	T	1.497e^-4	0.815	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	3182227	X_3182227_SNP [dm3] X_3288194_SNP [dm6]	T	C	1.501e^-4	0.815	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17347109	3R_17347109_SNP [dm3] 3R_21521387_SNP [dm6]	A	G	1.506e^-4	0.816	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	1.522e^-4	0.819	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	16875208	2R_16875208_SNP [dm3] 2R_20987703_SNP [dm6]	C	T	1.524e^-4	0.819	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17288770	3R_17288770_SNP [dm3] 3R_21463048_SNP [dm6]	A	T	1.528e^-4	0.819	INTERGENIC
3R	23678546	3R_23678546_SNP [dm3] 3R_27852824_SNP [dm6]	T	C	1.530e^-4	0.819	INTRON CG34353
3R	19072313	3R_19072313_SNP [dm3] 3R_23246591_SNP [dm6]	A	T	1.541e^-4	0.819	INTRON CG4467
3L	18898322	3L_18898322_SNP [dm3] 3L_18905222_SNP [dm6]	A	G	1.544e^-4	0.819	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13590374	2R_13590374_SNP [dm3] 2R_17702869_SNP [dm6]	A	G	1.561e^-4	0.819	UPSTREAM snoRNA:snR38:54Ec & 1 other DOWNSTREAM snoRNA:U31:54Eb & 4 others INTRON Uhg1
3L	11457462	3L_11457462_SNP [dm3] 3L_11464362_SNP [dm6]	G	A	1.563e^-4	0.819	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12810770	3L_12810770_SNP [dm3] 3L_12817670_SNP [dm6]	A	G	1.567e^-4	0.819	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11988893	2R_11988893_SNP [dm3] 2R_16101388_SNP [dm6]	C	A	1.568e^-4	0.819	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	19271270	2R_19271270_SNP [dm3] 2R_23383747_SNP [dm6]	G	T	1.573e^-4	0.819	UPSTREAM CG13551 DOWNSTREAM CG30414 EXON CR44784	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu
2L	2659819	2L_2659819_SNP [dm3] 2L_2659819_SNP [dm6]	T	C	1.573e^-4	0.819	INTERGENIC
3R	25275489	3R_25275489_SNP [dm3] 3R_29449767_SNP [dm6]	T	C	1.576e^-4	0.819	INTRON Ptp99A
X	7906589	X_7906589_DEL [dm3] X_8012556_DEL [dm6]	TGT	T	1.576e^-4	0.819	INTRON Tbh
2R	16875210	2R_16875210_SNP [dm3] 2R_20987705_SNP [dm6]	A	T	1.596e^-4	0.819	INTRON CG3216	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5725321	2L_5725321_DEL [dm3] 2L_5725321_DEL [dm6]	TTAT	T	1.609e^-4	0.819	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12067730	3L_12067730_SNP [dm3] 3L_12074630_SNP [dm6]	C	G	1.610e^-4	0.819	INTRON Sema-5c
3L	17491305	3L_17491305_SNP [dm3] 3L_17498205_SNP [dm6]	C	G	1.618e^-4	0.819	INTRON Oatp74D
3L	17491310	3L_17491310_SNP [dm3] 3L_17498210_SNP [dm6]	G	A	1.618e^-4	0.819	INTRON Oatp74D
X	21072384	X_21072384_DEL [dm3] X_21201357_DEL [dm6]	GG	G	1.618e^-4	0.819	INTERGENIC
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	1.619e^-4	0.819	UTR_3_PRIME Elf
3L	13391390	3L_13391390_SNP [dm3] 3L_13398290_SNP [dm6]	C	G	1.623e^-4	0.819	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14983812	3R_14983812_SNP [dm3] 3R_19158090_SNP [dm6]	A	T	1.629e^-4	0.819	INTRON CG11779 & 1 other	TF binding site BDTNP1_TFBS_dl
X	15999808	X_15999808_SNP [dm3] X_16105775_SNP [dm6]	C	T	1.634e^-4	0.819	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	10897079	2R_10897079_SNP [dm3] 2R_15009574_SNP [dm6]	A	G	1.651e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7897996	2R_7897996_SNP [dm3] 2R_12010491_SNP [dm6]	A	T	1.657e^-4	0.819	INTRON otk	regulatory region REDfly_CRMs
3L	1105423	3L_1105423_SNP [dm3] 3L_1105423_SNP [dm6]	C	G	1.660e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8366837	2R_8366837_SNP [dm3] 2R_12479332_SNP [dm6]	G	A	1.662e^-4	0.819	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16770790	3R_16770790_SNP [dm3] 3R_20945068_SNP [dm6]	A	G	1.664e^-4	0.819	INTRON CG31191	TF binding site mE1_TFBS_cad
3R	26499264	3R_26499264_SNP [dm3] 3R_30673542_SNP [dm6]	C	A	1.669e^-4	0.819	INTERGENIC
3R	26786591	3R_26786591_SNP [dm3] 3R_30960869_SNP [dm6]	T	C	1.670e^-4	0.819	NON_SYNONYMOUS_CODING CG15548
3R	18581582	3R_18581582_SNP [dm3] 3R_22755860_SNP [dm6]	C	T	1.671e^-4	0.819	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23235878	3R_23235878_SNP [dm3] 3R_27410156_SNP [dm6]	C	T	1.674e^-4	0.819	INTRON side
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	1.675e^-4	0.819	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	7712147	3L_7712147_SNP [dm3] 3L_7719047_SNP [dm6]	T	A	1.676e^-4	0.819	UPSTREAM CG12262 & 1 other INTRON CG32373
2L	22004658	2L_22004658_SNP [dm3] 2L_22004658_SNP [dm6]	G	A	1.678e^-4	0.819	INTERGENIC	transposable element FlyBase
2L	18152752	2L_18152752_SNP [dm3] 2L_18152752_SNP [dm6]	T	C	1.678e^-4	0.819	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	19039228	2R_19039228_SNP [dm3] 2R_23151705_SNP [dm6]	C	A	1.683e^-4	0.819	INTERGENIC
2R	19039183	2R_19039183_SNP [dm3] 2R_23151660_SNP [dm6]	A	G	1.685e^-4	0.819	INTERGENIC
3L	21343615	3L_21343615_SNP [dm3] 3L_21350515_SNP [dm6]	T	A	1.690e^-4	0.819	INTRON CG32436
2L	5892762	2L_5892762_SNP [dm3] 2L_5892762_SNP [dm6]	A	G	1.692e^-4	0.819	DOWNSTREAM Acp26Aa INTRON Acp26Ab	TF binding site mE1_TFBS_sens
2R	12382275	2R_12382275_SNP [dm3] 2R_16494770_SNP [dm6]	G	C	1.706e^-4	0.821	INTERGENIC
3R	17345937	3R_17345937_SNP [dm3] 3R_21520215_SNP [dm6]	A	C	1.710e^-4	0.821	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	1.727e^-4	0.821	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3R	17613463	3R_17613463_SNP [dm3] 3R_21787741_SNP [dm6]	A	G	1.727e^-4	0.821	INTRON CASK
2R	19039225	2R_19039225_SNP [dm3] 2R_23151702_SNP [dm6]	A	G	1.743e^-4	0.821	INTERGENIC
2R	16786178	2R_16786178_SNP [dm3] 2R_20898673_SNP [dm6]	C	T	1.751e^-4	0.821	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	11857029	2L_11857029_SNP [dm3] 2L_11857029_SNP [dm6]	A	G	1.752e^-4	0.821	INTRON Pde1c
X	20214330	X_20214330_SNP [dm3] X_20343303_SNP [dm6]	C	T	1.759e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	14865046	X_14865046_SNP [dm3] X_14971013_SNP [dm6]	C	T	1.765e^-4	0.821	INTRON eag	TF binding site BDTNP1_TFBS_dl
2R	18554140	2R_18554140_SNP [dm3] 2R_22666635_SNP [dm6]	C	T	1.766e^-4	0.821	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 EXON CR42868
3L	13407492	3L_13407492_SNP [dm3] 3L_13414392_SNP [dm6]	A	G	1.767e^-4	0.821	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
3R	10968662	3R_10968662_SNP [dm3] 3R_15142940_SNP [dm6]	G	A	1.770e^-4	0.821	INTRON GlyS
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	1.775e^-4	0.821	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	10502991	2L_10502991_SNP [dm3] 2L_10502991_SNP [dm6]	T	G	1.776e^-4	0.821	INTRON Myo31DF
3L	7712117	3L_7712117_SNP [dm3] 3L_7719017_SNP [dm6]	T	G	1.782e^-4	0.821	UPSTREAM CG12262 & 1 other INTRON CG32373
3R	11709724	3R_11709724_SNP [dm3] 3R_15884002_SNP [dm6]	C	T	1.792e^-4	0.821	INTERGENIC
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	1.797e^-4	0.821	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	18898377	3L_18898377_SNP [dm3] 3L_18905277_SNP [dm6]	T	G	1.803e^-4	0.821	UPSTREAM CG6841 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17344092	3R_17344092_SNP [dm3] 3R_21518370_SNP [dm6]	A	T	1.804e^-4	0.821	INTERGENIC
3R	21452995	3R_21452995_DEL [dm3] 3R_25627273_DEL [dm6]	AA	A	1.811e^-4	0.821	UPSTREAM Ssadh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	21384446	X_21384446_SNP [dm3] X_21513419_SNP [dm6]	T	C	1.815e^-4	0.821	INTRON CR45082
2R	5193365	2R_5193365_SNP [dm3] 2R_9305860_SNP [dm6]	A	G	1.816e^-4	0.821	INTRON Myd88	TF binding site mE1_TFBS_cad
3R	25275512	3R_25275512_SNP [dm3] 3R_29449790_SNP [dm6]	T	C	1.827e^-4	0.821	INTRON Ptp99A
2L	12395546	2L_12395546_SNP [dm3] 2L_12395546_SNP [dm6]	G	T	1.828e^-4	0.821	INTRON bru-2
3R	17421459	3R_17421459_SNP [dm3] 3R_21595737_SNP [dm6]	A	G	1.829e^-4	0.821	DOWNSTREAM CR43653 INTRON InR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17693817	2R_17693817_SNP [dm3] 2R_21806312_SNP [dm6]	C	T	1.830e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_kn
3R	16675973	3R_16675973_SNP [dm3] 3R_20850251_SNP [dm6]	A	G	1.838e^-4	0.821	UPSTREAM RpS30 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23224729	3R_23224729_SNP [dm3] 3R_27399007_SNP [dm6]	G	A	1.844e^-4	0.821	SPLICE_SITE_REGION side INTRON side
3R	16672729	3R_16672729_SNP [dm3] 3R_20847007_SNP [dm6]	G	A	1.844e^-4	0.821	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6383653	2L_6383653_SNP [dm3] 2L_6383653_SNP [dm6]	G	A	1.849e^-4	0.821	SYNONYMOUS_CODING CG42370 DOWNSTREAM CG9507 INTRON CG42368
2L	10056526	2L_10056526_SNP [dm3] 2L_10056526_SNP [dm6]	A	G	1.851e^-4	0.821	UPSTREAM Pen DOWNSTREAM Cpr31A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	27050157	3R_27050157_SNP [dm3] 3R_31224435_SNP [dm6]	A	G	1.853e^-4	0.821	UPSTREAM CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7938226	2R_7938226_SNP [dm3] 2R_12050721_SNP [dm6]	G	A	1.855e^-4	0.821	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
3L	10968193	3L_10968193_SNP [dm3] 3L_10975093_SNP [dm6]	G	T	1.859e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad
2R	19039208	2R_19039208_DEL [dm3] 2R_23151685_DEL [dm6]	TATTG	T	1.859e^-4	0.821	INTERGENIC
3R	20401199	3R_20401199_INS [dm3] 3R_24575477_INS [dm6]	C	CTCC	1.868e^-4	0.821	INTRON CG13624
3R	20401201	3R_20401201_SNP [dm3] 3R_24575479_SNP [dm6]	A	T	1.868e^-4	0.821	INTRON CG13624
3R	20401203	3R_20401203_SNP [dm3] 3R_24575481_SNP [dm6]	G	T	1.868e^-4	0.821	INTRON CG13624
X	8332707	X_8332707_SNP [dm3] X_8438674_SNP [dm6]	C	T	1.870e^-4	0.821	UPSTREAM CG1440 & 1 other INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14516424	X_14516424_SNP [dm3] X_14622391_SNP [dm6]	G	C	1.870e^-4	0.821	INTRON NetA
2L	12998382	2L_12998382_SNP [dm3] 2L_12998382_SNP [dm6]	G	A	1.880e^-4	0.822	INTRON CG12404
3R	20788457	3R_20788457_SNP [dm3] 3R_24962735_SNP [dm6]	T	A	1.890e^-4	0.822	INTERGENIC
2R	17743049	2R_17743049_SNP [dm3] 2R_21855544_SNP [dm6]	A	T	1.899e^-4	0.822	INTERGENIC
3R	24820064	3R_24820064_SNP [dm3] 3R_28994342_SNP [dm6]	A	C	1.900e^-4	0.822	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3277718	3L_3277718_SNP [dm3] 3L_3277718_SNP [dm6]	T	C	1.904e^-4	0.822	INTERGENIC
3R	24095790	3R_24095790_SNP [dm3] 3R_28270068_SNP [dm6]	T	A	1.906e^-4	0.822	INTERGENIC
X	459878	X_459878_SNP [dm3] X_565845_SNP [dm6]	C	T	1.909e^-4	0.822	INTRON Appl
X	459899	X_459899_SNP [dm3] X_565866_SNP [dm6]	T	A	1.909e^-4	0.822	INTRON Appl
3R	21670259	3R_21670259_SNP [dm3] 3R_25844537_SNP [dm6]	A	T	1.928e^-4	0.822	DOWNSTREAM CR45653 INTERGENIC
2L	1276650	2L_1276650_SNP [dm3] 2L_1276650_SNP [dm6]	G	A	1.930e^-4	0.822	INTRON robo3
2L	1294850	2L_1294850_SNP [dm3] 2L_1294850_SNP [dm6]	T	C	1.930e^-4	0.822	UTR_3_PRIME robo3 DOWNSTREAM robo3
2R	9631744	2R_9631744_SNP [dm3] 2R_13744239_SNP [dm6]	G	T	1.946e^-4	0.822	INTRON fas
3L	21322786	3L_21322786_INS [dm3] 3L_21329686_INS [dm6]	A	ATTT	1.951e^-4	0.822	INTRON Rab26
2R	7897994	2R_7897994_SNP [dm3] 2R_12010489_SNP [dm6]	T	C	1.952e^-4	0.822	INTRON otk	regulatory region REDfly_CRMs
2R	10612107	2R_10612107_SNP [dm3] 2R_14724602_SNP [dm6]	C	T	1.956e^-4	0.822	INTERGENIC
2L	10073605	2L_10073605_SNP [dm3] 2L_10073605_SNP [dm6]	C	T	1.959e^-4	0.822	INTRON CG44153
3L	21341302	3L_21341302_SNP [dm3] 3L_21348202_SNP [dm6]	G	C	1.966e^-4	0.822	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	26851225	3R_26851225_INS [dm3] 3R_31025503_INS [dm6]	T	TCGTTT	1.980e^-4	0.822	INTERGENIC
X	17121763	X_17121763_SNP [dm3] X_17227730_SNP [dm6]	A	T	1.981e^-4	0.822	UPSTREAM CG10598 INTERGENIC
2L	13002896	2L_13002896_SNP [dm3] 2L_13002896_SNP [dm6]	G	C	1.984e^-4	0.822	SYNONYMOUS_CODING Vha68-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	14347527	X_14347527_SNP [dm3] X_14453494_SNP [dm6]	A	G	1.991e^-4	0.822	INTRON dpr8
2L	5295506	2L_5295506_SNP [dm3] 2L_5295506_SNP [dm6]	A	G	1.999e^-4	0.822	INTRON vri
2L	1710831	2L_1710831_SNP [dm3] 2L_1710831_SNP [dm6]	C	A	2.000e^-4	0.822	UPSTREAM CG17660 DOWNSTREAM frtz INTRON mRpL48	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6740279	2R_6740279_SNP [dm3] 2R_10852774_SNP [dm6]	T	A	2.019e^-4	0.822	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
X	10807108	X_10807108_SNP [dm3] X_10913075_SNP [dm6]	C	A	2.021e^-4	0.822	INTRON CG43901
X	14852133	X_14852133_SNP [dm3] X_14958100_SNP [dm6]	T	A	2.021e^-4	0.822	INTRON eag
2R	11988751	2R_11988751_SNP [dm3] 2R_16101246_SNP [dm6]	T	C	2.027e^-4	0.822	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2L	11162383	2L_11162383_SNP [dm3] 2L_11162383_SNP [dm6]	T	C	2.027e^-4	0.822	SYNONYMOUS_CODING Ca-beta INTRON Ca-beta
3L	2323021	3L_2323021_SNP [dm3] 3L_2323021_SNP [dm6]	T	C	2.029e^-4	0.822	INTRON MsR1
2L	1755483	2L_1755483_SNP [dm3] 2L_1755483_SNP [dm6]	T	C	2.029e^-4	0.822	SYNONYMOUS_CODING Gr22f	TF binding site BDTNP1_TFBS_twi
2L	5892242	2L_5892242_SNP [dm3] 2L_5892242_SNP [dm6]	G	T	2.032e^-4	0.822	DOWNSTREAM Acp26Ab & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8333989	2L_8333989_DEL [dm3] 2L_8333989_DEL [dm6]	TATT	T	2.044e^-4	0.822	INTERGENIC
X	13206387	X_13206387_SNP [dm3] X_13312354_SNP [dm6]	T	A	2.065e^-4	0.822	INTRON IP3K2
2R	17986713	2R_17986713_INS [dm3] 2R_22099208_INS [dm6]	G	GCA	2.081e^-4	0.822	UTR_5_PRIME CG11073	TF binding site BDTNP1_TFBS_dl
2L	1341990	2L_1341990_DEL [dm3] 2L_1341990_DEL [dm6]	AGGGTATTAAGTACTTAA...	A	2.091e^-4	0.822	SPLICE_SITE_REGION CG33923 INTRON CG33923
2L	1342009	2L_1342009_SNP [dm3] 2L_1342009_SNP [dm6]	G	A	2.091e^-4	0.822	INTRON CG33923
X	14861609	X_14861609_SNP [dm3] X_14967576_SNP [dm6]	A	C	2.092e^-4	0.822	INTRON eag
X	18816284	X_18816284_SNP [dm3] X_18922251_SNP [dm6]	A	G	2.094e^-4	0.822	INTERGENIC
2L	15183331	2L_15183331_SNP [dm3] 2L_15183331_SNP [dm6]	G	A	2.094e^-4	0.822	INTRON CG4168
3R	22987441	3R_22987441_SNP [dm3] 3R_27161719_SNP [dm6]	G	T	2.095e^-4	0.822	INTRON CG5909
2R	9311193	2R_9311193_SNP [dm3] 2R_13423688_SNP [dm6]	G	C	2.107e^-4	0.822	UPSTREAM CG30060 INTRON CG42321
3L	12086728	3L_12086728_SNP [dm3] 3L_12093628_SNP [dm6]	C	T	2.113e^-4	0.822	INTERGENIC
2L	267391	2L_267391_SNP [dm3] 2L_267391_SNP [dm6]	G	A	2.116e^-4	0.822	UTR_5_PRIME CG17075 INTRON CG3645
2R	5230378	2R_5230378_SNP [dm3] 2R_9342873_SNP [dm6]	A	G	2.119e^-4	0.822	INTRON CG13954 & 1 other
2R	10997102	2R_10997102_SNP [dm3] 2R_15109597_SNP [dm6]	T	C	2.124e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	5705681	3R_5705681_SNP [dm3] 3R_9879959_SNP [dm6]	G	A	2.129e^-4	0.822	INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	15999934	X_15999934_INS [dm3] X_16105901_INS [dm6]	C	CT	2.133e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	23234650	3R_23234650_SNP [dm3] 3R_27408928_SNP [dm6]	T	C	2.137e^-4	0.822	INTRON side
3R	21015948	3R_21015948_SNP [dm3] 3R_25190226_SNP [dm6]	A	T	2.142e^-4	0.822	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15261559	3L_15261559_SNP [dm3] 3L_15268459_SNP [dm6]	T	G	2.162e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	19446759	2R_19446759_SNP [dm3] 2R_23559236_SNP [dm6]	C	A	2.167e^-4	0.822	INTRON ItgalphaPS5	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18047214	X_18047214_SNP [dm3] X_18153181_SNP [dm6]	A	C	2.174e^-4	0.822	INTERGENIC
2L	15513183	2L_15513183_SNP [dm3] 2L_15513183_SNP [dm6]	A	T	2.177e^-4	0.822	INTERGENIC
3R	10260908	3R_10260908_SNP [dm3] 3R_14435186_SNP [dm6]	G	C	2.179e^-4	0.822	INTRON cv-c
2R	14564482	2R_14564482_SNP [dm3] 2R_18676977_SNP [dm6]	T	C	2.188e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12550654	3L_12550654_SNP [dm3] 3L_12557554_SNP [dm6]	A	G	2.195e^-4	0.822	INTRON sowah
2R	13514381	2R_13514381_SNP [dm3] 2R_17626876_SNP [dm6]	G	A	2.202e^-4	0.822	INTRON CG10936
3R	17067044	3R_17067044_SNP [dm3] 3R_21241322_SNP [dm6]	A	T	2.210e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs
2L	15021667	2L_15021667_SNP [dm3] 2L_15021667_SNP [dm6]	G	C	2.215e^-4	0.822	INTRON GABA-B-R1
X	14854124	X_14854124_SNP [dm3] X_14960091_SNP [dm6]	G	A	2.227e^-4	0.822	INTRON eag	TF binding site mE1_TFBS_bab1
3R	23546624	3R_23546624_SNP [dm3] 3R_27720902_SNP [dm6]	C	G	2.227e^-4	0.822	INTERGENIC
3L	13415886	3L_13415886_SNP [dm3] 3L_13422786_SNP [dm6]	C	T	2.228e^-4	0.822	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
3L	8665125	3L_8665125_SNP [dm3] 3L_8672025_SNP [dm6]	A	C	2.233e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	21470249	3R_21470249_SNP [dm3] 3R_25644527_SNP [dm6]	C	G	2.256e^-4	0.822	INTRON jigr1
X	11141758	X_11141758_SNP [dm3] X_11247725_SNP [dm6]	A	C	2.257e^-4	0.822	UPSTREAM CG15198 INTRON CG44422
3L	15683073	3L_15683073_SNP [dm3] 3L_15689973_SNP [dm6]	C	T	2.272e^-4	0.822	INTRON CG34451	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13348489	3L_13348489_SNP [dm3] 3L_13355389_SNP [dm6]	A	G	2.272e^-4	0.822	UPSTREAM Nplp2 DOWNSTREAM CG17687 INTERGENIC
X	15999613	X_15999613_SNP [dm3] X_16105580_SNP [dm6]	A	C	2.280e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6152267	3L_6152267_SNP [dm3] 3L_6159167_SNP [dm6]	A	C	2.282e^-4	0.822	UPSTREAM Cpr65Ay INTERGENIC
2L	15013169	2L_15013169_SNP [dm3] 2L_15013169_SNP [dm6]	C	T	2.287e^-4	0.822	UPSTREAM CR43856 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14259777	3L_14259777_INS [dm3] 3L_14266677_INS [dm6]	G	GC	2.299e^-4	0.822	INTERGENIC
3R	25993011	3R_25993011_SNP [dm3] 3R_30167289_SNP [dm6]	A	T	2.307e^-4	0.822	UPSTREAM CG31030 INTRON CG31028
3R	16288951	3R_16288951_SNP [dm3] 3R_20463229_SNP [dm6]	T	C	2.309e^-4	0.822	INTRON Gfrl
2L	5936960	2L_5936960_SNP [dm3] 2L_5936960_SNP [dm6]	C	T	2.320e^-4	0.822	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	2.323e^-4	0.822	INTRON Tango5
3R	16772518	3R_16772518_SNP [dm3] 3R_20946796_SNP [dm6]	C	T	2.331e^-4	0.822	INTERGENIC
2R	11141512	2R_11141512_INS [dm3] 2R_15254007_INS [dm6]	A	ACA	2.333e^-4	0.822	INTRON scb	TF binding site mE1_TFBS_cad
3R	17288733	3R_17288733_SNP [dm3] 3R_21463011_SNP [dm6]	C	A	2.336e^-4	0.822	INTERGENIC
2R	13713628	2R_13713628_SNP [dm3] 2R_17826123_SNP [dm6]	C	A	2.341e^-4	0.822	INTRON grh	transposable element FlyBase
3L	1250838	3L_1250838_SNP [dm3] 3L_1250838_SNP [dm6]	A	G	2.344e^-4	0.822	UTR_5_PRIME CG9129 DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2L	5892585	2L_5892585_SNP [dm3] 2L_5892585_SNP [dm6]	T	G	2.346e^-4	0.822	NON_SYNONYMOUS_CODING Acp26Ab DOWNSTREAM Acp26Aa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	7444758	2R_7444758_SNP [dm3] 2R_11557253_SNP [dm6]	A	C	2.351e^-4	0.822	INTERGENIC
3R	13824837	3R_13824837_SNP [dm3] 3R_17999115_SNP [dm6]	G	C	2.354e^-4	0.822	INTRON cpo
3R	13795109	3R_13795109_SNP [dm3] 3R_17969387_SNP [dm6]	G	C	2.358e^-4	0.822	INTRON cpo
2L	10502990	2L_10502990_SNP [dm3] 2L_10502990_SNP [dm6]	T	A	2.367e^-4	0.822	INTRON Myo31DF
2L	19564451	2L_19564451_SNP [dm3] 2L_19564451_SNP [dm6]	C	T	2.367e^-4	0.822	SYNONYMOUS_CODING CG13078	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3082541	2L_3082541_SNP [dm3] 2L_3082541_SNP [dm6]	C	T	2.367e^-4	0.822	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12452367	3L_12452367_SNP [dm3] 3L_12459267_SNP [dm6]	C	T	2.370e^-4	0.822	INTERGENIC
3R	21470242	3R_21470242_SNP [dm3] 3R_25644520_SNP [dm6]	T	A	2.373e^-4	0.822	INTRON jigr1
3R	21470250	3R_21470250_SNP [dm3] 3R_25644528_SNP [dm6]	A	G	2.373e^-4	0.822	INTRON jigr1
3R	21470256	3R_21470256_SNP [dm3] 3R_25644534_SNP [dm6]	C	A	2.373e^-4	0.822	INTRON jigr1
3R	21470261	3R_21470261_SNP [dm3] 3R_25644539_SNP [dm6]	G	T	2.373e^-4	0.822	INTRON jigr1
2R	8167924	2R_8167924_SNP [dm3] 2R_12280419_SNP [dm6]	T	C	2.382e^-4	0.822	SYNONYMOUS_CODING CG42700	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4167727	3L_4167727_SNP [dm3] 3L_4167727_SNP [dm6]	G	C	2.386e^-4	0.822	UPSTREAM mas DOWNSTREAM CR44529 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	12023687	2R_12023687_SNP [dm3] 2R_16136182_SNP [dm6]	G	C	2.392e^-4	0.822	SPLICE_SITE_REGION spin INTRON spin
3R	26494780	3R_26494780_SNP [dm3] 3R_30669058_SNP [dm6]	A	C	2.398e^-4	0.822	INTERGENIC
2R	10137440	2R_10137440_SNP [dm3] 2R_14249935_SNP [dm6]	C	T	2.402e^-4	0.822	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	20238774	3R_20238774_SNP [dm3] 3R_24413052_SNP [dm6]	G	A	2.409e^-4	0.822	INTRON nAChRalpha1
2L	22831527	2L_22831527_SNP [dm3] 2L_22938795_SNP [dm6]	A	T	2.414e^-4	0.822	NON_SYNONYMOUS_CODING lt
3L	1914851	3L_1914851_SNP [dm3] 3L_1914851_SNP [dm6]	C	T	2.414e^-4	0.822	INTERGENIC
3L	13540550	3L_13540550_SNP [dm3] 3L_13547450_SNP [dm6]	C	T	2.429e^-4	0.822	INTRON bru-3	TF binding site mE1_TFBS_inv
3L	7726930	3L_7726930_SNP [dm3] 3L_7733830_SNP [dm6]	T	A	2.436e^-4	0.822	INTRON CG32373 & 1 other
3R	24195971	3R_24195971_SNP [dm3] 3R_28370249_SNP [dm6]	A	G	2.446e^-4	0.822	INTERGENIC
3L	10905464	3L_10905464_SNP [dm3] 3L_10912364_SNP [dm6]	G	C	2.459e^-4	0.822	INTERGENIC
3R	14444188	3R_14444188_INS [dm3] 3R_18618466_INS [dm6]	A	ATCG	2.464e^-4	0.822	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	21341529	3L_21341529_SNP [dm3] 3L_21348429_SNP [dm6]	T	G	2.473e^-4	0.822	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14945717	2R_14945717_SNP [dm3] 2R_19058212_SNP [dm6]	A	G	2.477e^-4	0.822	INTERGENIC
3R	26502895	3R_26502895_SNP [dm3] 3R_30677173_SNP [dm6]	A	G	2.486e^-4	0.822	INTERGENIC
X	15999736	X_15999736_SNP [dm3] X_16105703_SNP [dm6]	A	G	2.489e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	27050165	3R_27050165_DEL [dm3] 3R_31224443_DEL [dm6]	CAGCTA	C	2.493e^-4	0.822	UPSTREAM CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10447102	X_10447102_SNP [dm3] X_10553069_SNP [dm6]	C	A	2.494e^-4	0.822	INTRON spri
3R	18985073	3R_18985073_SNP [dm3] 3R_23159351_SNP [dm6]	G	T	2.499e^-4	0.822	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27019283	3R_27019283_SNP [dm3] 3R_31193561_SNP [dm6]	T	C	2.501e^-4	0.822	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19135801	2R_19135801_INS [dm3] 2R_23248278_INS [dm6]	A	AAGTTA	2.509e^-4	0.822	UPSTREAM RpL22-like INTERGENIC
2R	20624864	2R_20624864_SNP [dm3] 2R_24737341_SNP [dm6]	C	T	2.510e^-4	0.822	UPSTREAM Mid1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16113650	2R_16113650_MNP [dm3] 2R_20226145_MNP [dm6]	CTATAA	GGCGTC	2.511e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15292826	2R_15292826_SNP [dm3] 2R_19405321_SNP [dm6]	T	G	2.521e^-4	0.822	SYNONYMOUS_CODING hts INTRON hts
2L	11857055	2L_11857055_SNP [dm3] 2L_11857055_SNP [dm6]	C	A	2.529e^-4	0.822	INTRON Pde1c
2R	7439793	2R_7439793_SNP [dm3] 2R_11552288_SNP [dm6]	G	A	2.530e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10194124	2R_10194124_SNP [dm3] 2R_14306619_SNP [dm6]	T	G	2.530e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	15996755	2R_15996755_SNP [dm3] 2R_20109250_SNP [dm6]	T	C	2.530e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	2.538e^-4	0.822	INTRON CG15365
3R	17345756	3R_17345756_DEL [dm3] 3R_21520034_DEL [dm6]	TTTATATATTTAATGCAAAG...	T	2.542e^-4	0.822	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	11458658	3L_11458658_SNP [dm3] 3L_11465558_SNP [dm6]	T	G	2.543e^-4	0.822	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	26757778	3R_26757778_SNP [dm3] 3R_30932056_SNP [dm6]	A	G	2.557e^-4	0.822	INTERGENIC
2L	10055353	2L_10055353_SNP [dm3] 2L_10055353_SNP [dm6]	G	C	2.562e^-4	0.822	SYNONYMOUS_CODING Cpr31A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5725273	2L_5725273_SNP [dm3] 2L_5725273_SNP [dm6]	C	T	2.565e^-4	0.822	INTRON CG11030	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12332984	3R_12332984_SNP [dm3] 3R_16507262_SNP [dm6]	A	G	2.567e^-4	0.822	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3R	20055088	3R_20055088_SNP [dm3] 3R_24229366_SNP [dm6]	C	T	2.567e^-4	0.822	UTR_3_PRIME Spase22-23 DOWNSTREAM CG13609 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17825968	X_17825968_SNP [dm3] X_17931935_SNP [dm6]	T	G	2.572e^-4	0.822	INTRON Sh
3R	14437695	3R_14437695_SNP [dm3] 3R_18611973_SNP [dm6]	C	G	2.575e^-4	0.822	INTRON qin & 1 other
3R	27296119	3R_27296119_SNP [dm3] 3R_31470397_SNP [dm6]	T	G	2.575e^-4	0.822	DOWNSTREAM CR45554 INTERGENIC
2L	1593844	2L_1593844_SNP [dm3] 2L_1593844_SNP [dm6]	G	A	2.576e^-4	0.822	DOWNSTREAM CG31935 INTRON haf
2L	1593898	2L_1593898_SNP [dm3] 2L_1593898_SNP [dm6]	T	C	2.576e^-4	0.822	DOWNSTREAM CG31935 INTRON haf
2L	1595091	2L_1595091_SNP [dm3] 2L_1595091_SNP [dm6]	C	T	2.576e^-4	0.822	SYNONYMOUS_CODING CG31935 INTRON haf
2L	1598886	2L_1598886_SNP [dm3] 2L_1598886_SNP [dm6]	G	A	2.576e^-4	0.822	INTRON haf & 1 other
2L	1602048	2L_1602048_SNP [dm3] 2L_1602048_SNP [dm6]	A	T	2.576e^-4	0.822	INTRON CG31935 & 1 other	TF binding site mE1_TFBS_cad
2L	1604805	2L_1604805_SNP [dm3] 2L_1604805_SNP [dm6]	A	T	2.576e^-4	0.822	SYNONYMOUS_CODING haf INTRON CG31935
2L	1608224	2L_1608224_SNP [dm3] 2L_1608224_SNP [dm6]	G	A	2.576e^-4	0.822	UTR_3_PRIME haf INTRON CG31935
X	15999784	X_15999784_SNP [dm3] X_16105751_SNP [dm6]	C	A	2.577e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	1352394	2L_1352394_SNP [dm3] 2L_1352394_SNP [dm6]	C	T	2.580e^-4	0.822	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	2.584e^-4	0.822	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15039097	2L_15039097_SNP [dm3] 2L_15039097_SNP [dm6]	C	A	2.584e^-4	0.822	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	2.588e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	7934715	2R_7934715_SNP [dm3] 2R_12047210_SNP [dm6]	A	G	2.599e^-4	0.822	INTRON Drep-1
3R	18445402	3R_18445402_SNP [dm3] 3R_22619680_SNP [dm6]	A	C	2.604e^-4	0.822	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
3L	16555013	3L_16555013_SNP [dm3] 3L_16561913_SNP [dm6]	G	A	2.610e^-4	0.822	INTERGENIC
2L	3082544	2L_3082544_SNP [dm3] 2L_3082544_SNP [dm6]	C	T	2.612e^-4	0.822	INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	2.612e^-4	0.822	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21343631	3L_21343631_SNP [dm3] 3L_21350531_SNP [dm6]	T	C	2.617e^-4	0.822	INTRON CG32436
2R	9791729	2R_9791729_DEL [dm3] 2R_13904224_DEL [dm6]	CAT	C	2.618e^-4	0.822	INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17347491	3R_17347491_SNP [dm3] 3R_21521769_SNP [dm6]	G	A	2.618e^-4	0.822	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12663581	3L_12663581_SNP [dm3] 3L_12670481_SNP [dm6]	G	C	2.620e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7528381	3L_7528381_SNP [dm3] 3L_7535281_SNP [dm6]	C	T	2.621e^-4	0.822	SYNONYMOUS_CODING lqf
2L	968988	2L_968988_INS [dm3] 2L_968988_INS [dm6]	A	AT	2.622e^-4	0.822	INTERGENIC
3R	24921220	3R_24921220_SNP [dm3] 3R_29095498_SNP [dm6]	T	C	2.640e^-4	0.822	INTRON CG11873 EXON CR45030
X	18934534	X_18934534_SNP [dm3] X_19040501_SNP [dm6]	C	T	2.641e^-4	0.822	INTERGENIC
X	14347531	X_14347531_SNP [dm3] X_14453498_SNP [dm6]	C	A	2.644e^-4	0.822	INTRON dpr8
X	459948	X_459948_DEL [dm3] X_565915_DEL [dm6]	CC	C	2.646e^-4	0.822	INTRON Appl
X	459966	X_459966_SNP [dm3] X_565933_SNP [dm6]	G	A	2.646e^-4	0.822	INTRON Appl
3R	25417515	3R_25417515_SNP [dm3] 3R_29591793_SNP [dm6]	A	T	2.646e^-4	0.822	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	24822160	3R_24822160_SNP [dm3] 3R_28996438_SNP [dm6]	C	T	2.646e^-4	0.822	INTRON wat	TF binding site BDTNP1_TFBS_twi
2L	1579475	2L_1579475_SNP [dm3] 2L_1579475_SNP [dm6]	C	T	2.668e^-4	0.822	INTRON haf	TF binding site mE1_TFBS_sens
3R	18498904	3R_18498904_SNP [dm3] 3R_22673182_SNP [dm6]	T	C	2.671e^-4	0.822	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14774968	3R_14774968_SNP [dm3] 3R_18949246_SNP [dm6]	C	T	2.672e^-4	0.822	UPSTREAM CG42613 & 1 other INTRON CG42613
3R	20438889	3R_20438889_SNP [dm3] 3R_24613167_SNP [dm6]	A	C	2.673e^-4	0.822	INTRON mld
3L	4417835	3L_4417835_SNP [dm3] 3L_4417835_SNP [dm6]	G	A	2.677e^-4	0.822	UTR_5_PRIME DOR UPSTREAM DOR
3R	19589160	3R_19589160_SNP [dm3] 3R_23763438_SNP [dm6]	A	T	2.678e^-4	0.822	UPSTREAM Lsd-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	17016417	3R_17016417_DEL [dm3] 3R_21190695_DEL [dm6]	TCAAT	T	2.688e^-4	0.822	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6679585	3L_6679585_SNP [dm3] 3L_6686485_SNP [dm6]	T	C	2.689e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
3R	16288968	3R_16288968_SNP [dm3] 3R_20463246_SNP [dm6]	C	T	2.691e^-4	0.822	INTRON Gfrl
3R	26756822	3R_26756822_SNP [dm3] 3R_30931100_SNP [dm6]	T	C	2.691e^-4	0.822	DOWNSTREAM Ptx1 INTERGENIC
3R	18445359	3R_18445359_SNP [dm3] 3R_22619637_SNP [dm6]	T	A	2.694e^-4	0.822	NON_SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
3R	25325721	3R_25325721_SNP [dm3] 3R_29499999_SNP [dm6]	G	A	2.697e^-4	0.822	SPLICE_SITE_REGION Trc8 INTRON Trc8	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5268174	3L_5268174_SNP [dm3] 3L_5275074_SNP [dm6]	T	C	2.698e^-4	0.822	INTRON shep	TF binding site BDTNP1_TFBS_twi
3R	9712787	3R_9712787_SNP [dm3] 3R_13887065_SNP [dm6]	T	A	2.704e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1710277	2L_1710277_SNP [dm3] 2L_1710277_SNP [dm6]	G	C	2.709e^-4	0.822	SYNONYMOUS_CODING CG17660 UPSTREAM mRpL48	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	26948215	3R_26948215_SNP [dm3] 3R_31122493_SNP [dm6]	G	T	2.712e^-4	0.822	DOWNSTREAM Prosalpha3T INTERGENIC
3R	12949315	3R_12949315_SNP [dm3] 3R_17123593_SNP [dm6]	G	A	2.716e^-4	0.822	UPSTREAM cher & 1 other INTRON cher
3R	13825316	3R_13825316_SNP [dm3] 3R_17999594_SNP [dm6]	G	A	2.723e^-4	0.822	INTRON cpo
3L	11574821	3L_11574821_SNP [dm3] 3L_11581721_SNP [dm6]	T	C	2.740e^-4	0.822	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2L	1593385	2L_1593385_SNP [dm3] 2L_1593385_SNP [dm6]	A	C	2.751e^-4	0.822	INTRON haf
2L	1608026	2L_1608026_SNP [dm3] 2L_1608026_SNP [dm6]	G	A	2.751e^-4	0.822	UTR_3_PRIME haf INTRON CG31935
2R	7439171	2R_7439171_SNP [dm3] 2R_11551666_SNP [dm6]	C	T	2.752e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17911564	X_17911564_SNP [dm3] X_18017531_SNP [dm6]	T	C	2.753e^-4	0.822	INTRON Sh
2R	15535374	2R_15535374_SNP [dm3] 2R_19647869_SNP [dm6]	C	G	2.754e^-4	0.822	UPSTREAM CG15905 INTERGENIC
2R	19135800	2R_19135800_SNP [dm3] 2R_23248277_SNP [dm6]	A	G	2.756e^-4	0.822	UPSTREAM RpL22-like INTERGENIC
2R	9509712	2R_9509712_SNP [dm3] 2R_13622207_SNP [dm6]	T	C	2.763e^-4	0.822	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	26630161	3R_26630161_SNP [dm3] 3R_30804439_SNP [dm6]	C	T	2.766e^-4	0.822	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1592613	2L_1592613_SNP [dm3] 2L_1592613_SNP [dm6]	G	T	2.773e^-4	0.822	INTRON haf
2L	1592614	2L_1592614_SNP [dm3] 2L_1592614_SNP [dm6]	C	G	2.773e^-4	0.822	INTRON haf
3L	17490785	3L_17490785_SNP [dm3] 3L_17497685_SNP [dm6]	G	T	2.782e^-4	0.822	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	13692306	3R_13692306_SNP [dm3] 3R_17866584_SNP [dm6]	A	G	2.784e^-4	0.822	INTRON tinc	TF binding site mE1_TFBS_cad
3R	23680932	3R_23680932_SNP [dm3] 3R_27855210_SNP [dm6]	C	T	2.786e^-4	0.822	INTRON CG34353
2L	1743492	2L_1743492_SNP [dm3] 2L_1743492_SNP [dm6]	A	C	2.795e^-4	0.822	SYNONYMOUS_CODING CG17646
X	2841829	X_2841829_SNP [dm3] X_2947796_SNP [dm6]	C	T	2.799e^-4	0.822	UPSTREAM CG3603 DOWNSTREAM CG17959 INTRON kirre
2R	20941729	2R_20941729_SNP [dm3] 2R_25054206_SNP [dm6]	C	T	2.804e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2271666	2L_2271666_SNP [dm3] 2L_2271666_SNP [dm6]	C	G	2.808e^-4	0.822	EXON CR43753
2L	13621995	2L_13621995_SNP [dm3] 2L_13621995_SNP [dm6]	C	A	2.811e^-4	0.822	INTRON kuz
3L	11458555	3L_11458555_SNP [dm3] 3L_11465455_SNP [dm6]	C	G	2.816e^-4	0.822	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	18340781	X_18340781_SNP [dm3] X_18446748_SNP [dm6]	T	G	2.822e^-4	0.822	INTRON CG32547	TF binding site mE1_TFBS_chinmo
2L	11201356	2L_11201356_SNP [dm3] 2L_11201356_SNP [dm6]	G	C	2.824e^-4	0.822	INTRON Ca-beta
2L	1333397	2L_1333397_SNP [dm3] 2L_1333397_SNP [dm6]	G	C	2.834e^-4	0.822	UPSTREAM CG5440 INTERGENIC
2L	1348713	2L_1348713_SNP [dm3] 2L_1348713_SNP [dm6]	G	T	2.834e^-4	0.822	INTERGENIC
3L	10443883	3L_10443883_SNP [dm3] 3L_10450783_SNP [dm6]	A	G	2.837e^-4	0.822	INTERGENIC
2L	19123118	2L_19123118_SNP [dm3] 2L_19123118_SNP [dm6]	C	T	2.840e^-4	0.822	SPLICE_SITE_REGION l_2_37Cc DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3L	4181066	3L_4181066_SNP [dm3] 3L_4181066_SNP [dm6]	C	T	2.840e^-4	0.822	SYNONYMOUS_CODING Teh2 INTRON CG18675	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17418934	2R_17418934_SNP [dm3] 2R_21531429_SNP [dm6]	C	T	2.848e^-4	0.822	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
3R	19124043	3R_19124043_SNP [dm3] 3R_23298321_SNP [dm6]	G	C	2.852e^-4	0.822	INTRON pnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5295815	2L_5295815_SNP [dm3] 2L_5295815_SNP [dm6]	G	A	2.862e^-4	0.822	INTRON vri
3R	26761308	3R_26761308_SNP [dm3] 3R_30935586_SNP [dm6]	C	A	2.868e^-4	0.822	UTR_3_PRIME CG15549
3L	13228897	3L_13228897_SNP [dm3] 3L_13235797_SNP [dm6]	C	A	2.873e^-4	0.822	INTRON caps
3R	16341568	3R_16341568_SNP [dm3] 3R_20515846_SNP [dm6]	T	C	2.878e^-4	0.822	INTERGENIC
2L	15014551	2L_15014551_SNP [dm3] 2L_15014551_SNP [dm6]	A	C	2.881e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17288778	3R_17288778_SNP [dm3] 3R_21463056_SNP [dm6]	A	T	2.887e^-4	0.822	INTERGENIC
X	14515652	X_14515652_SNP [dm3] X_14621619_SNP [dm6]	A	G	2.887e^-4	0.822	INTRON NetA
2L	18152836	2L_18152836_SNP [dm3] 2L_18152836_SNP [dm6]	A	T	2.888e^-4	0.822	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	10599992	2R_10599992_SNP [dm3] 2R_14712487_SNP [dm6]	A	T	2.893e^-4	0.822	INTRON mspo
2L	21054234	2L_21054234_SNP [dm3] 2L_21054234_SNP [dm6]	T	A	2.899e^-4	0.822	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_dl
2R	873156	2R_873156_SNP [dm3] 2R_4985651_SNP [dm6]	C	A	2.899e^-4	0.822	INTRON Ir41a	transposable element FlyBase
3R	24613931	3R_24613931_DEL [dm3] 3R_28788209_DEL [dm6]	ATA	A	2.900e^-4	0.822	INTERGENIC
2L	20388289	2L_20388289_SNP [dm3] 2L_20388289_SNP [dm6]	T	C	2.906e^-4	0.822	INTRON CG10947
3L	6427029	3L_6427029_SNP [dm3] 3L_6433929_SNP [dm6]	C	T	2.913e^-4	0.822	INTRON CG42747
3R	13791280	3R_13791280_SNP [dm3] 3R_17965558_SNP [dm6]	G	T	2.915e^-4	0.822	INTRON cpo
2R	16113639	2R_16113639_SNP [dm3] 2R_20226134_SNP [dm6]	T	C	2.922e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16113640	2R_16113640_SNP [dm3] 2R_20226135_SNP [dm6]	A	G	2.922e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14445151	3R_14445151_SNP [dm3] 3R_18619429_SNP [dm6]	T	C	2.925e^-4	0.822	INTRON qin & 1 other	TF binding site mE1_TFBS_cad
X	15999700	X_15999700_SNP [dm3] X_16105667_SNP [dm6]	G	A	2.925e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	12333070	3R_12333070_SNP [dm3] 3R_16507348_SNP [dm6]	C	T	2.951e^-4	0.822	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12333071	3R_12333071_SNP [dm3] 3R_16507349_SNP [dm6]	A	T	2.951e^-4	0.822	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1293257	2L_1293257_SNP [dm3] 2L_1293257_SNP [dm6]	A	G	2.960e^-4	0.822	SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23235922	3R_23235922_SNP [dm3] 3R_27410200_SNP [dm6]	T	C	2.965e^-4	0.822	INTRON side
3R	14437510	3R_14437510_SNP [dm3] 3R_18611788_SNP [dm6]	G	T	2.966e^-4	0.822	INTRON qin & 1 other
3L	13542947	3L_13542947_SNP [dm3] 3L_13549847_SNP [dm6]	G	A	2.980e^-4	0.822	INTRON bru-3
3L	6427058	3L_6427058_DEL [dm3] 3L_6433958_DEL [dm6]	TT	T	2.981e^-4	0.822	INTRON CG42747
X	11925546	X_11925546_SNP [dm3] X_12031513_SNP [dm6]	T	G	2.981e^-4	0.822	UPSTREAM Cyp311a1 INTERGENIC
2R	9327893	2R_9327893_SNP [dm3] 2R_13440388_SNP [dm6]	A	T	2.982e^-4	0.822	SPLICE_SITE_REGION cnn INTRON cnn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	2.986e^-4	0.822	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	21738131	3R_21738131_SNP [dm3] 3R_25912409_SNP [dm6]	C	T	2.997e^-4	0.822	SYNONYMOUS_CODING CG42235 INTRON CG42235
2L	19379261	2L_19379261_SNP [dm3] 2L_19379261_SNP [dm6]	A	G	3.001e^-4	0.822	INTERGENIC
3R	9868219	3R_9868219_SNP [dm3] 3R_14042497_SNP [dm6]	G	A	3.004e^-4	0.822	INTERGENIC
3R	9868233	3R_9868233_DEL [dm3] 3R_14042511_DEL [dm6]	TGTAGGCATATAT...	T	3.004e^-4	0.822	INTERGENIC
2L	6309799	2L_6309799_SNP [dm3] 2L_6309799_SNP [dm6]	T	C	3.005e^-4	0.822	DOWNSTREAM CG13984 INTRON Ddr
2L	3758927	2L_3758927_SNP [dm3] 2L_3758927_SNP [dm6]	C	A	3.006e^-4	0.822	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	9556669	2L_9556669_SNP [dm3] 2L_9556669_SNP [dm6]	C	A	3.013e^-4	0.822	INTRON jp
3L	5268180	3L_5268180_DEL [dm3] 3L_5275080_DEL [dm6]	TGT	T	3.016e^-4	0.822	INTRON shep	TF binding site BDTNP1_TFBS_twi
2R	17693739	2R_17693739_SNP [dm3] 2R_21806234_SNP [dm6]	T	C	3.020e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_kn
3R	20809631	3R_20809631_SNP [dm3] 3R_24983909_SNP [dm6]	A	G	3.020e^-4	0.822	UPSTREAM tnc INTERGENIC
3R	19391693	3R_19391693_SNP [dm3] 3R_23565971_SNP [dm6]	A	G	3.021e^-4	0.822	INTRON beat-IV
X	12235955	X_12235955_SNP [dm3] X_12341922_SNP [dm6]	A	T	3.028e^-4	0.822	INTERGENIC
2L	11244171	2L_11244171_SNP [dm3] 2L_11244171_SNP [dm6]	A	T	3.034e^-4	0.822	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18296884	2R_18296884_SNP [dm3] 2R_22409379_SNP [dm6]	G	C	3.034e^-4	0.822	UTR_3_PRIME qkr58E-3 DOWNSTREAM qkr58E-3 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10367054	3R_10367054_SNP [dm3] 3R_14541332_SNP [dm6]	G	A	3.036e^-4	0.822	INTRON Pde6
3R	23037876	3R_23037876_SNP [dm3] 3R_27212154_SNP [dm6]	T	A	3.039e^-4	0.822	INTERGENIC
3R	23037878	3R_23037878_SNP [dm3] 3R_27212156_SNP [dm6]	C	G	3.039e^-4	0.822	INTERGENIC
3R	19588213	3R_19588213_SNP [dm3] 3R_23762491_SNP [dm6]	C	T	3.041e^-4	0.822	INTRON CG10217	TF binding site mE1_TFBS_sens
2L	1343168	2L_1343168_DEL [dm3] 2L_1343168_DEL [dm6]	TCGGACACATT...	T	3.042e^-4	0.822	DOWNSTREAM CG33922 INTERGENIC
2R	9783492	2R_9783492_SNP [dm3] 2R_13895987_SNP [dm6]	A	T	3.054e^-4	0.822	INTRON shot
X	15999824	X_15999824_SNP [dm3] X_16105791_SNP [dm6]	C	T	3.056e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	10060983	2L_10060983_SNP [dm3] 2L_10060983_SNP [dm6]	A	G	3.064e^-4	0.822	START_GAINED Spn31A UTR_5_PRIME Spn31A DOWNSTREAM Pen
2L	8334022	2L_8334022_SNP [dm3] 2L_8334022_SNP [dm6]	C	T	3.071e^-4	0.822	INTERGENIC
2L	11243596	2L_11243596_SNP [dm3] 2L_11243596_SNP [dm6]	C	T	3.075e^-4	0.822	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11243721	2L_11243721_SNP [dm3] 2L_11243721_SNP [dm6]	C	T	3.075e^-4	0.822	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	3.077e^-4	0.822	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2907732	2L_2907732_SNP [dm3] 2L_2907732_SNP [dm6]	A	G	3.080e^-4	0.822	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3L	5734386	3L_5734386_SNP [dm3] 3L_5741286_SNP [dm6]	A	G	3.087e^-4	0.822	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16113618	2R_16113618_SNP [dm3] 2R_20226113_SNP [dm6]	C	T	3.096e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19135803	2R_19135803_SNP [dm3] 2R_23248280_SNP [dm6]	C	T	3.097e^-4	0.822	UPSTREAM RpL22-like INTERGENIC
3R	26755621	3R_26755621_SNP [dm3] 3R_30929899_SNP [dm6]	G	A	3.111e^-4	0.822	SYNONYMOUS_CODING Ptx1 UTR_3_PRIME Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	3.117e^-4	0.822	INTRON CG10663
3L	7564629	3L_7564629_SNP [dm3] 3L_7571529_SNP [dm6]	C	T	3.119e^-4	0.822	INTERGENIC
2L	1380029	2L_1380029_SNP [dm3] 2L_1380029_SNP [dm6]	C	A	3.121e^-4	0.822	DOWNSTREAM CR44898 & 1 other INTERGENIC
2L	20822064	2L_20822064_SNP [dm3] 2L_20822064_SNP [dm6]	T	C	3.134e^-4	0.822	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21016741	3R_21016741_SNP [dm3] 3R_25191019_SNP [dm6]	T	C	3.135e^-4	0.822	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13408079	3L_13408079_SNP [dm3] 3L_13414979_SNP [dm6]	C	T	3.136e^-4	0.822	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15021653	2L_15021653_SNP [dm3] 2L_15021653_SNP [dm6]	C	A	3.142e^-4	0.822	INTRON GABA-B-R1
2L	1623523	2L_1623523_SNP [dm3] 2L_1623523_SNP [dm6]	G	A	3.146e^-4	0.822	UPSTREAM CR44603 EXON CR44603
2R	5193268	2R_5193268_SNP [dm3] 2R_9305763_SNP [dm6]	A	G	3.146e^-4	0.822	SPLICE_SITE_REGION Myd88 INTRON Myd88	TF binding site mE1_TFBS_cad
3L	17490778	3L_17490778_SNP [dm3] 3L_17497678_SNP [dm6]	A	G	3.165e^-4	0.822	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	10137395	2R_10137395_SNP [dm3] 2R_14249890_SNP [dm6]	T	C	3.167e^-4	0.822	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	17749844	3R_17749844_DEL [dm3] 3R_21924122_DEL [dm6]	TT	T	3.168e^-4	0.822	INTERGENIC
2L	1341982	2L_1341982_SNP [dm3] 2L_1341982_SNP [dm6]	A	C	3.171e^-4	0.822	SPLICE_SITE_REGION CG33923 SYNONYMOUS_CODING CG33923
2L	551639	2L_551639_SNP [dm3] 2L_551639_SNP [dm6]	G	T	3.180e^-4	0.822	SYNONYMOUS_CODING Ets21C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7304656	2L_7304656_SNP [dm3] 2L_7304656_SNP [dm6]	G	A	3.183e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	365210	X_365210_SNP [dm3] X_471177_SNP [dm6]	G	A	3.191e^-4	0.822	UTR_3_PRIME ebo UPSTREAM CG32816	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA
3R	19589453	3R_19589453_INS [dm3] 3R_23763731_INS [dm6]	A	AT	3.194e^-4	0.822	UPSTREAM Lsd-1 & 1 other INTERGENIC
3L	5589573	3L_5589573_SNP [dm3] 3L_5596473_SNP [dm6]	T	A	3.194e^-4	0.822	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17483406	2R_17483406_SNP [dm3] 2R_21595901_SNP [dm6]	G	C	3.196e^-4	0.822	INTERGENIC
X	17197991	X_17197991_SNP [dm3] X_17303958_SNP [dm6]	A	G	3.206e^-4	0.822	INTRON CG5445
3L	9695526	3L_9695526_SNP [dm3] 3L_9702426_SNP [dm6]	G	A	3.211e^-4	0.822	SYNONYMOUS_CODING CG6761	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18994142	3R_18994142_INS [dm3] 3R_23168420_INS [dm6]	C	CT	3.219e^-4	0.822	UPSTREAM Irk1 INTRON Irk1
2L	6257891	2L_6257891_SNP [dm3] 2L_6257891_SNP [dm6]	T	C	3.220e^-4	0.822	INTRON Ddr
2L	2271664	2L_2271664_SNP [dm3] 2L_2271664_SNP [dm6]	G	T	3.229e^-4	0.822	EXON CR43753
3R	13802475	3R_13802475_SNP [dm3] 3R_17976753_SNP [dm6]	T	A	3.229e^-4	0.822	INTRON cpo
X	17170078	X_17170078_SNP [dm3] X_17276045_SNP [dm6]	T	C	3.237e^-4	0.822	INTRON f
3L	677256	3L_677256_SNP [dm3] 3L_677256_SNP [dm6]	G	T	3.238e^-4	0.822	DOWNSTREAM CG17129 INTERGENIC
2L	19382394	2L_19382394_SNP [dm3] 2L_19382394_SNP [dm6]	G	A	3.241e^-4	0.822	DOWNSTREAM fon INTRON CG17350	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12090999	3L_12090999_SNP [dm3] 3L_12097899_SNP [dm6]	T	C	3.241e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17771157	2R_17771157_SNP [dm3] 2R_21883652_SNP [dm6]	T	A	3.243e^-4	0.822	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	8383667	3R_8383667_SNP [dm3] 3R_12557945_SNP [dm6]	C	T	3.252e^-4	0.822	INTRON Octbeta2R
3R	20238731	3R_20238731_SNP [dm3] 3R_24413009_SNP [dm6]	C	T	3.262e^-4	0.822	INTRON nAChRalpha1
X	10807144	X_10807144_SNP [dm3] X_10913111_SNP [dm6]	T	G	3.262e^-4	0.822	INTRON CG43901
3L	12090994	3L_12090994_SNP [dm3] 3L_12097894_SNP [dm6]	G	A	3.264e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	3.280e^-4	0.822	DOWNSTREAM CG44153 & 1 other INTERGENIC
2R	11988753	2R_11988753_SNP [dm3] 2R_16101248_SNP [dm6]	T	C	3.293e^-4	0.822	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3R	18163971	3R_18163971_SNP [dm3] 3R_22338249_SNP [dm6]	G	A	3.294e^-4	0.822	INTRON CG5388	TF binding site mE1_TFBS_Trl
2R	7226735	2R_7226735_SNP [dm3] 2R_11339230_SNP [dm6]	A	C	3.295e^-4	0.822	UTR_3_PRIME zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	9737959	2R_9737959_SNP [dm3] 2R_13850454_SNP [dm6]	C	G	3.303e^-4	0.822	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	1294745	2L_1294745_SNP [dm3] 2L_1294745_SNP [dm6]	G	T	3.313e^-4	0.822	UTR_3_PRIME robo3 DOWNSTREAM robo3
3R	24578366	3R_24578366_SNP [dm3] 3R_28752644_SNP [dm6]	T	C	3.315e^-4	0.822	UPSTREAM CG10000 INTERGENIC
2L	1210663	2L_1210663_SNP [dm3] 2L_1210663_SNP [dm6]	C	G	3.316e^-4	0.822	INTERGENIC
3L	11550226	3L_11550226_SNP [dm3] 3L_11557126_SNP [dm6]	G	A	3.318e^-4	0.822	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	3667850	2L_3667850_SNP [dm3] 2L_3667850_SNP [dm6]	G	A	3.319e^-4	0.822	DOWNSTREAM Sfp24Ba & 1 other INTRON CG34340
2R	14945756	2R_14945756_SNP [dm3] 2R_19058251_SNP [dm6]	A	T	3.322e^-4	0.822	INTERGENIC
2L	12266185	2L_12266185_SNP [dm3] 2L_12266185_SNP [dm6]	C	A	3.325e^-4	0.822	INTRON aret
2L	3857356	2L_3857356_SNP [dm3] 2L_3857356_SNP [dm6]	T	G	3.326e^-4	0.822	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
2L	162506	2L_162506_DEL [dm3] 2L_162506_DEL [dm6]	CGTGC	C	3.338e^-4	0.822	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3R	26122676	3R_26122676_SNP [dm3] 3R_30296954_SNP [dm6]	G	A	3.354e^-4	0.822	INTRON hdc	TF binding site mE1_TFBS_inv
2R	9971891	2R_9971891_SNP [dm3] 2R_14084386_SNP [dm6]	T	G	3.361e^-4	0.822	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	5725640	2L_5725640_SNP [dm3] 2L_5725640_SNP [dm6]	C	A	3.363e^-4	0.822	DOWNSTREAM CG14006 INTRON CG11030
X	6838450	X_6838450_SNP [dm3] X_6944417_SNP [dm6]	C	T	3.364e^-4	0.822	INTRON CG14431
3R	5154748	3R_5154748_SNP [dm3] 3R_9329026_SNP [dm6]	G	A	3.367e^-4	0.822	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	102611	2L_102611_SNP [dm3] 2L_102611_SNP [dm6]	A	T	3.369e^-4	0.822	SYNONYMOUS_CODING CG11377 DOWNSTREAM Zir	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	9817658	2R_9817658_SNP [dm3] 2R_13930153_SNP [dm6]	C	T	3.393e^-4	0.822	INTRON shot
2L	1623961	2L_1623961_SNP [dm3] 2L_1623961_SNP [dm6]	C	G	3.395e^-4	0.822	UPSTREAM CR44603 EXON CR44603
X	15999712	X_15999712_DEL [dm3] X_16105679_DEL [dm6]	TT	T	3.397e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	19135807	2R_19135807_SNP [dm3] 2R_23248284_SNP [dm6]	A	G	3.398e^-4	0.822	UPSTREAM RpL22-like INTERGENIC
3L	11574599	3L_11574599_SNP [dm3] 3L_11581499_SNP [dm6]	T	C	3.402e^-4	0.822	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
X	14515429	X_14515429_SNP [dm3] X_14621396_SNP [dm6]	G	T	3.404e^-4	0.822	INTRON NetA
3R	23546658	3R_23546658_SNP [dm3] 3R_27720936_SNP [dm6]	C	T	3.405e^-4	0.822	INTERGENIC
2R	19135791	2R_19135791_SNP [dm3] 2R_23248268_SNP [dm6]	C	G	3.408e^-4	0.822	UPSTREAM RpL22-like INTERGENIC
2L	4588690	2L_4588690_SNP [dm3] 2L_4588690_SNP [dm6]	C	G	3.408e^-4	0.822	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12403464	X_12403464_SNP [dm3] X_12509431_SNP [dm6]	A	G	3.413e^-4	0.822	INTRON CG2556
2L	15005115	2L_15005115_SNP [dm3] 2L_15005115_SNP [dm6]	G	A	3.416e^-4	0.822	UPSTREAM dyn-p25 INTERGENIC
2R	15316570	2R_15316570_SNP [dm3] 2R_19429065_SNP [dm6]	A	G	3.421e^-4	0.822	DOWNSTREAM CalpA INTRON CalpA
2R	12165864	2R_12165864_SNP [dm3] 2R_16278359_SNP [dm6]	T	G	3.427e^-4	0.822	UTR_5_PRIME cato DOWNSTREAM CG33017	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15535232	2R_15535232_SNP [dm3] 2R_19647727_SNP [dm6]	G	C	3.430e^-4	0.822	UPSTREAM CG15905 INTERGENIC	TF binding site mE1_TFBS_cad
2L	3455452	2L_3455452_SNP [dm3] 2L_3455452_SNP [dm6]	C	T	3.433e^-4	0.822	SYNONYMOUS_CODING Cog3
2L	3455603	2L_3455603_SNP [dm3] 2L_3455603_SNP [dm6]	G	A	3.433e^-4	0.822	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
3R	23037864	3R_23037864_SNP [dm3] 3R_27212142_SNP [dm6]	C	T	3.437e^-4	0.822	INTERGENIC
3R	21045802	3R_21045802_SNP [dm3] 3R_25220080_SNP [dm6]	A	G	3.439e^-4	0.822	INTRON CG31103	TF binding site BDTNP1_TFBS_dl
3L	977999	3L_977999_SNP [dm3] 3L_977999_SNP [dm6]	G	A	3.442e^-4	0.822	INTRON Glut1
3L	978003	3L_978003_DEL [dm3] 3L_978003_DEL [dm6]	AAAGAACATCTCGATTGGAA...	A	3.442e^-4	0.822	INTRON Glut1
X	11925550	X_11925550_SNP [dm3] X_12031517_SNP [dm6]	A	T	3.443e^-4	0.822	UPSTREAM Cyp311a1 INTERGENIC
3R	24822084	3R_24822084_SNP [dm3] 3R_28996362_SNP [dm6]	T	G	3.457e^-4	0.822	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19491465	2R_19491465_SNP [dm3] 2R_23603942_SNP [dm6]	T	C	3.457e^-4	0.822	NON_SYNONYMOUS_CODING CG17664 DOWNSTREAM CG5398
3R	18163959	3R_18163959_SNP [dm3] 3R_22338237_SNP [dm6]	G	T	3.466e^-4	0.822	INTRON CG5388	TF binding site mE1_TFBS_Trl
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	3.471e^-4	0.822	INTERGENIC
2L	20295602	2L_20295602_SNP [dm3] 2L_20295602_SNP [dm6]	T	C	3.478e^-4	0.822	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
2R	908202	2R_908202_SNP [dm3] 2R_5020697_SNP [dm6]	A	G	3.480e^-4	0.822	SYNONYMOUS_CODING Ir41a
3R	24818445	3R_24818445_SNP [dm3] 3R_28992723_SNP [dm6]	T	A	3.481e^-4	0.822	DOWNSTREAM wat INTERGENIC
2R	20205383	2R_20205383_SNP [dm3] 2R_24317860_SNP [dm6]	C	T	3.483e^-4	0.822	INTERGENIC
2R	13383088	2R_13383088_SNP [dm3] 2R_17495583_SNP [dm6]	C	A	3.494e^-4	0.822	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad
3R	14928083	3R_14928083_SNP [dm3] 3R_19102361_SNP [dm6]	A	T	3.498e^-4	0.822	INTRON CG6040
X	16671211	X_16671211_SNP [dm3] X_16777178_SNP [dm6]	C	A	3.499e^-4	0.822	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13451692	2R_13451692_SNP [dm3] 2R_17564187_SNP [dm6]	G	A	3.511e^-4	0.822	UTR_3_PRIME CG43324 UPSTREAM CG14480 DOWNSTREAM Klp54D
3L	21343630	3L_21343630_SNP [dm3] 3L_21350530_SNP [dm6]	C	G	3.513e^-4	0.822	INTRON CG32436
3R	18849432	3R_18849432_SNP [dm3] 3R_23023710_SNP [dm6]	C	A	3.514e^-4	0.822	INTRON lmd	TF binding site BDTNP1_TFBS_twi
3L	14894470	3L_14894470_SNP [dm3] 3L_14901370_SNP [dm6]	T	C	3.518e^-4	0.822	INTERGENIC
3R	24105174	3R_24105174_SNP [dm3] 3R_28279452_SNP [dm6]	G	T	3.521e^-4	0.822	INTERGENIC
3L	10307913	3L_10307913_SNP [dm3] 3L_10314813_SNP [dm6]	G	A	3.526e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18163961	3R_18163961_SNP [dm3] 3R_22338239_SNP [dm6]	G	A	3.529e^-4	0.822	INTRON CG5388	TF binding site mE1_TFBS_Trl
3R	21021733	3R_21021733_SNP [dm3] 3R_25196011_SNP [dm6]	G	A	3.536e^-4	0.822	SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	3.536e^-4	0.822	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	3857131	2L_3857131_SNP [dm3] 2L_3857131_SNP [dm6]	A	T	3.537e^-4	0.822	EXON CR45450	TF binding site mE1_TFBS_sens
2L	1239044	2L_1239044_DEL [dm3] 2L_1239044_DEL [dm6]	TGCGT	T	3.539e^-4	0.822	UPSTREAM CG5397 INTERGENIC
2R	5249042	2R_5249042_SNP [dm3] 2R_9361537_SNP [dm6]	C	T	3.545e^-4	0.822	INTRON CG13954
X	14515349	X_14515349_SNP [dm3] X_14621316_SNP [dm6]	C	G	3.551e^-4	0.822	INTRON NetA
X	10968262	X_10968262_SNP [dm3] X_11074229_SNP [dm6]	G	A	3.561e^-4	0.822	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
X	15988054	X_15988054_SNP [dm3] X_16094021_SNP [dm6]	T	G	3.562e^-4	0.822	UTR_3_PRIME CG42354 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	27050172	3R_27050172_INS [dm3] 3R_31224450_INS [dm6]	A	ATT	3.578e^-4	0.822	UPSTREAM CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26494935	3R_26494935_SNP [dm3] 3R_30669213_SNP [dm6]	G	T	3.581e^-4	0.822	INTERGENIC
X	2372072	X_2372072_SNP [dm3] X_2478039_SNP [dm6]	A	T	3.586e^-4	0.822	UTR_3_PRIME trol INTRON trol
2L	12264332	2L_12264332_SNP [dm3] 2L_12264332_SNP [dm6]	A	G	3.588e^-4	0.822	INTRON aret
3L	5589687	3L_5589687_SNP [dm3] 3L_5596587_SNP [dm6]	G	A	3.592e^-4	0.822	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1264604	3L_1264604_SNP [dm3] 3L_1264604_SNP [dm6]	C	G	3.592e^-4	0.822	INTRON CG9134
2L	1336799	2L_1336799_SNP [dm3] 2L_1336799_SNP [dm6]	A	T	3.592e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1336800	2L_1336800_SNP [dm3] 2L_1336800_SNP [dm6]	A	C	3.592e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
3R	5154759	3R_5154759_SNP [dm3] 3R_9329037_SNP [dm6]	C	T	3.599e^-4	0.822	UPSTREAM CG8861 DOWNSTREAM CG12951 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	19379268	2L_19379268_SNP [dm3] 2L_19379268_SNP [dm6]	G	A	3.602e^-4	0.822	INTERGENIC
3L	17264968	3L_17264968_SNP [dm3] 3L_17271868_SNP [dm6]	C	T	3.604e^-4	0.822	INTERGENIC
2R	14517152	2R_14517152_INS [dm3] 2R_18629647_INS [dm6]	T	TTTCT	3.605e^-4	0.822	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	19801621	2R_19801621_SNP [dm3] 2R_23914098_SNP [dm6]	T	G	3.605e^-4	0.822	SYNONYMOUS_CODING kcc
2L	278396	2L_278396_SNP [dm3] 2L_278396_SNP [dm6]	G	A	3.613e^-4	0.822	UPSTREAM CG17078 INTRON smo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23677683	3R_23677683_SNP [dm3] 3R_27851961_SNP [dm6]	A	T	3.628e^-4	0.822	INTRON CG34353
3R	26786675	3R_26786675_DEL [dm3] 3R_30960953_DEL [dm6]	GCGG	G	3.634e^-4	0.822
3R	26660327	3R_26660327_SNP [dm3] 3R_30834605_SNP [dm6]	A	G	3.641e^-4	0.822	INTRON CG15544
3R	26042746	3R_26042746_SNP [dm3] 3R_30217024_SNP [dm6]	T	A	3.646e^-4	0.822	DOWNSTREAM CecC INTERGENIC
2L	13621994	2L_13621994_SNP [dm3] 2L_13621994_SNP [dm6]	C	T	3.658e^-4	0.822	INTRON kuz
3L	4023124	3L_4023124_SNP [dm3] 3L_4023124_SNP [dm6]	C	T	3.670e^-4	0.822	SYNONYMOUS_CODING CG11594 DOWNSTREAM Mul1
2R	14037886	2R_14037886_SNP [dm3] 2R_18150381_SNP [dm6]	C	T	3.670e^-4	0.822	SYNONYMOUS_CODING CG5742	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	5639872	X_5639872_SNP [dm3] X_5745839_SNP [dm6]	A	G	3.679e^-4	0.822	INTRON IntS6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	17345812	3R_17345812_SNP [dm3] 3R_21520090_SNP [dm6]	C	T	3.679e^-4	0.822	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2R	9767181	2R_9767181_SNP [dm3] 2R_13879676_SNP [dm6]	G	A	3.680e^-4	0.822	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25232362	3R_25232362_SNP [dm3] 3R_29406640_SNP [dm6]	A	T	3.684e^-4	0.822	INTRON Ptp99A
3L	11458528	3L_11458528_SNP [dm3] 3L_11465428_SNP [dm6]	T	A	3.687e^-4	0.822	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458554	3L_11458554_SNP [dm3] 3L_11465454_SNP [dm6]	G	T	3.687e^-4	0.822	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	11458557	3L_11458557_SNP [dm3] 3L_11465457_SNP [dm6]	T	A	3.687e^-4	0.822	UPSTREAM CG6140 INTRON CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	15524926	2L_15524926_SNP [dm3] 2L_15524926_SNP [dm6]	G	A	3.691e^-4	0.822	DOWNSTREAM CR43761 INTERGENIC
2R	8908553	2R_8908553_SNP [dm3] 2R_13021048_SNP [dm6]	A	T	3.694e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9825569	2L_9825569_INS [dm3] 2L_9825569_INS [dm6]	C	CCAAGACCAAAGGCC...	3.694e^-4	0.822	INTRON nAChRalpha6
3L	2198284	3L_2198284_SNP [dm3] 3L_2198284_SNP [dm6]	G	A	3.694e^-4	0.822	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2198306	3L_2198306_SNP [dm3] 3L_2198306_SNP [dm6]	G	A	3.694e^-4	0.822	DOWNSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20689422	2R_20689422_SNP [dm3] 2R_24801899_SNP [dm6]	A	G	3.695e^-4	0.822	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	11708393	3L_11708393_SNP [dm3] 3L_11715293_SNP [dm6]	C	T	3.702e^-4	0.822	UPSTREAM CG14132 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4291273	3L_4291273_SNP [dm3] 3L_4291273_SNP [dm6]	T	A	3.708e^-4	0.822	UTR_3_PRIME CG15012 DOWNSTREAM Hexo1
2L	1612381	2L_1612381_SNP [dm3] 2L_1612381_SNP [dm6]	A	C	3.709e^-4	0.822	NON_SYNONYMOUS_CODING CG14352 DOWNSTREAM RFeSP	TF binding site mE1_TFBS_inv
2L	22868055	2L_22868055_SNP [dm3] 2L_22975323_SNP [dm6]	C	T	3.723e^-4	0.822	INTERGENIC
2L	2907747	2L_2907747_SNP [dm3] 2L_2907747_SNP [dm6]	C	G	3.724e^-4	0.822	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3R	15650407	3R_15650407_SNP [dm3] 3R_19824685_SNP [dm6]	C	A	3.726e^-4	0.822	INTRON bnl
X	10968244	X_10968244_SNP [dm3] X_11074211_SNP [dm6]	A	C	3.728e^-4	0.822	SYNONYMOUS_CODING sev	TF binding site mE1_TFBS_chinmo
2R	15868038	2R_15868038_SNP [dm3] 2R_19980533_SNP [dm6]	T	A	3.731e^-4	0.822	SPLICE_SITE_REGION CG8654 UPSTREAM CG8654 INTRON CG8654
3L	12091014	3L_12091014_SNP [dm3] 3L_12097914_SNP [dm6]	A	C	3.732e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	5251313	2R_5251313_SNP [dm3] 2R_9363808_SNP [dm6]	T	C	3.734e^-4	0.822	UPSTREAM CG12158 INTRON CG13954
X	18464447	X_18464447_SNP [dm3] X_18570414_SNP [dm6]	T	C	3.735e^-4	0.822	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2R	14517148	2R_14517148_SNP [dm3] 2R_18629643_SNP [dm6]	A	T	3.740e^-4	0.822	UTR_3_PRIME CG5482 DOWNSTREAM CG5482 & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	17346864	3R_17346864_SNP [dm3] 3R_21521142_SNP [dm6]	C	G	3.745e^-4	0.822	SYNONYMOUS_CODING CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	9867519	3R_9867519_SNP [dm3] 3R_14041797_SNP [dm6]	A	G	3.745e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8177525	2L_8177525_SNP [dm3] 2L_8177525_SNP [dm6]	C	T	3.752e^-4	0.822	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17820161	X_17820161_SNP [dm3] X_17926128_SNP [dm6]	T	G	3.752e^-4	0.822	UTR_3_PRIME Sh
X	12245105	X_12245105_SNP [dm3] X_12351072_SNP [dm6]	G	T	3.754e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	14362437	2R_14362437_SNP [dm3] 2R_18474932_SNP [dm6]	A	C	3.759e^-4	0.822	INTRON CG30116
3R	15870225	3R_15870225_SNP [dm3] 3R_20044503_SNP [dm6]	T	C	3.766e^-4	0.822	INTRON CG17193 & 2 others
2R	16113720	2R_16113720_SNP [dm3] 2R_20226215_SNP [dm6]	G	A	3.768e^-4	0.822	INTERGENIC
3L	6425858	3L_6425858_SNP [dm3] 3L_6432758_SNP [dm6]	A	G	3.771e^-4	0.822	INTRON CG42747
3R	21045935	3R_21045935_SNP [dm3] 3R_25220213_SNP [dm6]	T	C	3.771e^-4	0.822	SYNONYMOUS_CODING CG31103	TF binding site BDTNP1_TFBS_dl
2R	7109454	2R_7109454_SNP [dm3] 2R_11221949_SNP [dm6]	A	C	3.775e^-4	0.822	UTR_3_PRIME Syx6 UPSTREAM CG7737
3R	24822162	3R_24822162_SNP [dm3] 3R_28996440_SNP [dm6]	T	C	3.788e^-4	0.822	INTRON wat	TF binding site BDTNP1_TFBS_twi
3R	17345267	3R_17345267_SNP [dm3] 3R_21519545_SNP [dm6]	A	G	3.791e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9821706	2L_9821706_SNP [dm3] 2L_9821706_SNP [dm6]	C	G	3.795e^-4	0.822	INTRON nAChRalpha6
3R	23234652	3R_23234652_SNP [dm3] 3R_27408930_SNP [dm6]	T	G	3.797e^-4	0.822	INTRON side
2L	1337651	2L_1337651_SNP [dm3] 2L_1337651_SNP [dm6]	T	A	3.805e^-4	0.822	INTERGENIC
2L	14973176	2L_14973176_SNP [dm3] 2L_14973176_SNP [dm6]	G	T	3.815e^-4	0.822	UPSTREAM CG42313 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17323053	3L_17323053_SNP [dm3] 3L_17329953_SNP [dm6]	A	T	3.817e^-4	0.822	UPSTREAM Or74a INTERGENIC
X	21384778	X_21384778_MNP [dm3] X_21513751_MNP [dm6]	AAT	CGC	3.823e^-4	0.822	INTRON CR45082
X	21384781	X_21384781_DEL [dm3] X_21513754_DEL [dm6]	ATAATATATAAT...	A	3.823e^-4	0.822	INTRON CR45082
2L	1634843	2L_1634843_SNP [dm3] 2L_1634843_SNP [dm6]	T	C	3.824e^-4	0.822	INTERGENIC
3L	4099785	3L_4099785_SNP [dm3] 3L_4099785_SNP [dm6]	T	C	3.829e^-4	0.822	INTRON CG14995	TF binding site mE1_TFBS_inv
2R	8675176	2R_8675176_SNP [dm3] 2R_12787671_SNP [dm6]	C	G	3.831e^-4	0.822	INTRON sca EXON CR45137
2L	12267543	2L_12267543_SNP [dm3] 2L_12267543_SNP [dm6]	T	C	3.846e^-4	0.822	INTRON aret
2R	7226690	2R_7226690_SNP [dm3] 2R_11339185_SNP [dm6]	C	T	3.848e^-4	0.822	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26499168	3R_26499168_INS [dm3] 3R_30673446_INS [dm6]	T	TAGCT	3.849e^-4	0.822	INTERGENIC
2L	261971	2L_261971_SNP [dm3] 2L_261971_SNP [dm6]	C	T	3.849e^-4	0.822	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2L	261989	2L_261989_SNP [dm3] 2L_261989_SNP [dm6]	A	C	3.849e^-4	0.822	UTR_3_PRIME CG17075 UPSTREAM CR44219 INTRON CG3645
2R	8675175	2R_8675175_SNP [dm3] 2R_12787670_SNP [dm6]	G	C	3.851e^-4	0.822	INTRON sca EXON CR45137
2R	5249270	2R_5249270_SNP [dm3] 2R_9361765_SNP [dm6]	A	T	3.859e^-4	0.822	DOWNSTREAM CG12158 INTRON CG13954	TF binding site mE1_TFBS_Kr
3R	26429662	3R_26429662_SNP [dm3] 3R_30603940_SNP [dm6]	C	A	3.859e^-4	0.822	UPSTREAM PH4alphaNE3 INTRON CG31021
3R	18985029	3R_18985029_SNP [dm3] 3R_23159307_SNP [dm6]	A	G	3.862e^-4	0.822	UTR_5_PRIME VhaAC39-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14347617	3R_14347617_SNP [dm3] 3R_18521895_SNP [dm6]	A	G	3.867e^-4	0.822	INTRON fru
2L	267388	2L_267388_SNP [dm3] 2L_267388_SNP [dm6]	A	G	3.869e^-4	0.822	UTR_5_PRIME CG17075 INTRON CG3645
3R	25991541	3R_25991541_SNP [dm3] 3R_30165819_SNP [dm6]	C	G	3.875e^-4	0.822	SYNONYMOUS_CODING CG31030 DOWNSTREAM CG31028	TF binding site mE1_TFBS_cad
3L	4202513	3L_4202513_SNP [dm3] 3L_4202513_SNP [dm6]	G	T	3.880e^-4	0.822	SYNONYMOUS_CODING CG15005 INTRON CG43367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	13417752	3R_13417752_SNP [dm3] 3R_17592030_SNP [dm6]	T	C	3.898e^-4	0.822	INTERGENIC
3R	13417758	3R_13417758_SNP [dm3] 3R_17592036_SNP [dm6]	T	A	3.898e^-4	0.822	INTERGENIC
2R	15237168	2R_15237168_SNP [dm3] 2R_19349663_SNP [dm6]	C	A	3.900e^-4	0.822	UTR_5_PRIME Rgk1
2R	10997404	2R_10997404_SNP [dm3] 2R_15109899_SNP [dm6]	A	T	3.914e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15576195	X_15576195_SNP [dm3] X_15682162_SNP [dm6]	A	G	3.919e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3R	21669588	3R_21669588_SNP [dm3] 3R_25843866_SNP [dm6]	C	T	3.935e^-4	0.822	UPSTREAM CR45653 DOWNSTREAM alpha4GT2 INTERGENIC
3R	9871741	3R_9871741_INS [dm3] 3R_14046019_INS [dm6]	A	AA	3.937e^-4	0.822	INTERGENIC
3R	18496877	3R_18496877_SNP [dm3] 3R_22671155_SNP [dm6]	T	A	3.939e^-4	0.822	INTRON CG45058
X	15999634	X_15999634_SNP [dm3] X_16105601_SNP [dm6]	T	G	3.939e^-4	0.822	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	27465088	3R_27465088_SNP [dm3] 3R_31639366_SNP [dm6]	G	C	3.940e^-4	0.822	INTRON kek6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24819312	3R_24819312_SNP [dm3] 3R_28993590_SNP [dm6]	A	G	3.945e^-4	0.822	SYNONYMOUS_CODING wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24094219	3R_24094219_SNP [dm3] 3R_28268497_SNP [dm6]	A	G	3.946e^-4	0.822	INTERGENIC
3L	1134782	3L_1134782_SNP [dm3] 3L_1134782_SNP [dm6]	T	C	3.966e^-4	0.822	INTERGENIC	regulatory region REDfly_CRMs
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	3.968e^-4	0.822	INTRON TyrR
3L	3503821	3L_3503821_SNP [dm3] 3L_3503821_SNP [dm6]	T	C	3.977e^-4	0.822	INTRON CG42324
2R	17735605	2R_17735605_SNP [dm3] 2R_21848100_SNP [dm6]	C	T	3.985e^-4	0.822	DOWNSTREAM tRNA:CR30406 INTERGENIC
2R	17676045	2R_17676045_SNP [dm3] 2R_21788540_SNP [dm6]	A	C	3.991e^-4	0.822	INTERGENIC
3R	23178850	3R_23178850_SNP [dm3] 3R_27353128_SNP [dm6]	T	G	3.994e^-4	0.822	INTRON CG42534
2R	16872759	2R_16872759_SNP [dm3] 2R_20985254_SNP [dm6]	T	C	4.000e^-4	0.822	INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7938208	2R_7938208_SNP [dm3] 2R_12050703_SNP [dm6]	A	G	4.020e^-4	0.822	DOWNSTREAM CG30039 & 1 other INTERGENIC
3R	20238730	3R_20238730_SNP [dm3] 3R_24413008_SNP [dm6]	C	T	4.027e^-4	0.822	INTRON nAChRalpha1
3R	17330992	3R_17330992_SNP [dm3] 3R_21505270_SNP [dm6]	G	A	4.027e^-4	0.822	INTRON C15	regulatory region REDfly_CRMs
3R	19586137	3R_19586137_SNP [dm3] 3R_23760415_SNP [dm6]	C	G	4.030e^-4	0.822	DOWNSTREAM Plip & 1 other INTRON CG10219	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4949683	2R_4949683_SNP [dm3] 2R_9062178_SNP [dm6]	A	T	4.032e^-4	0.822	UPSTREAM ana & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	9887414	3L_9887414_SNP [dm3] 3L_9894314_SNP [dm6]	T	C	4.033e^-4	0.822	UPSTREAM CG6709 DOWNSTREAM CalpB & 1 other INTRON CG14164 & 1 other
2L	19547620	2L_19547620_SNP [dm3] 2L_19547620_SNP [dm6]	C	T	4.035e^-4	0.822	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20402455	2R_20402455_SNP [dm3] 2R_24514932_SNP [dm6]	G	T	4.035e^-4	0.822	UTR_5_PRIME Letm1 UPSTREAM Ir60b INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26786687	3R_26786687_SNP [dm3] 3R_30960965_SNP [dm6]	A	G	4.038e^-4	0.822	NON_SYNONYMOUS_CODING CG15548
2L	5951003	2L_5951003_SNP [dm3] 2L_5951003_SNP [dm6]	C	T	4.047e^-4	0.822	SYNONYMOUS_CODING CG9044	TF binding site mE1_TFBS_sens
3R	18619259	3R_18619259_SNP [dm3] 3R_22793537_SNP [dm6]	A	T	4.048e^-4	0.822	UTR_3_PRIME CG7029	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14435482	2R_14435482_SNP [dm3] 2R_18547977_SNP [dm6]	C	T	4.054e^-4	0.822	UTR_3_PRIME Rgk2
3R	25164282	3R_25164282_SNP [dm3] 3R_29338560_SNP [dm6]	G	T	4.059e^-4	0.822	INTERGENIC
X	7373005	X_7373005_INS [dm3] X_7478972_INS [dm6]	A	AA	4.063e^-4	0.822	INTERGENIC
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	4.063e^-4	0.822	INTERGENIC
2R	16939931	2R_16939931_SNP [dm3] 2R_21052426_SNP [dm6]	T	A	4.068e^-4	0.822	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16305701	2L_16305701_SNP [dm3] 2L_16305701_SNP [dm6]	A	C	4.071e^-4	0.822	UTR_3_PRIME c_2_M DOWNSTREAM CG5861
2R	907625	2R_907625_SNP [dm3] 2R_5020120_SNP [dm6]	C	A	4.084e^-4	0.822	INTRON Ir41a	transposable element FlyBase
3R	23121119	3R_23121119_SNP [dm3] 3R_27295397_SNP [dm6]	T	C	4.090e^-4	0.822	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16688399	3R_16688399_SNP [dm3] 3R_20862677_SNP [dm6]	T	A	4.091e^-4	0.822	INTRON CG3822
3L	10246909	3L_10246909_SNP [dm3] 3L_10253809_SNP [dm6]	T	C	4.094e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20285072	2R_20285072_SNP [dm3] 2R_24397549_SNP [dm6]	C	G	4.105e^-4	0.822	NON_SYNONYMOUS_CODING slik	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27019256	3R_27019256_SNP [dm3] 3R_31193534_SNP [dm6]	C	A	4.106e^-4	0.822	SYNONYMOUS_CODING bnk INTRON mesh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5481201	3L_5481201_SNP [dm3] 3L_5488101_SNP [dm6]	T	G	4.111e^-4	0.822	INTERGENIC
2R	9737872	2R_9737872_SNP [dm3] 2R_13850367_SNP [dm6]	G	A	4.112e^-4	0.822	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	9824744	2L_9824744_SNP [dm3] 2L_9824744_SNP [dm6]	A	T	4.117e^-4	0.822	INTRON nAChRalpha6
X	4855840	X_4855840_SNP [dm3] X_4961807_SNP [dm6]	C	T	4.119e^-4	0.822	UPSTREAM SIP3 INTRON CR44833
3R	24100311	3R_24100311_SNP [dm3] 3R_28274589_SNP [dm6]	T	A	4.122e^-4	0.822	INTERGENIC
3L	18585242	3L_18585242_SNP [dm3] 3L_18592142_SNP [dm6]	T	C	4.124e^-4	0.822	DOWNSTREAM term INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18585243	3L_18585243_SNP [dm3] 3L_18592143_SNP [dm6]	C	T	4.124e^-4	0.822	DOWNSTREAM term INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16053474	X_16053474_INS [dm3] X_16159441_INS [dm6]	A	AA	4.140e^-4	0.822	INTERGENIC
3L	3005688	3L_3005688_SNP [dm3] 3L_3005688_SNP [dm6]	T	A	4.148e^-4	0.822	INTRON FMRFaR
3R	5216849	3R_5216849_SNP [dm3] 3R_9391127_SNP [dm6]	A	T	4.151e^-4	0.822	INTRON FER
3R	22986996	3R_22986996_SNP [dm3] 3R_27161274_SNP [dm6]	A	C	4.154e^-4	0.822	UTR_5_PRIME CG5909
3R	27075841	3R_27075841_INS [dm3] 3R_31250119_INS [dm6]	C	CA	4.155e^-4	0.822	INTRON qless
3R	26937316	3R_26937316_SNP [dm3] 3R_31111594_SNP [dm6]	C	T	4.159e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_inv
3L	11550183	3L_11550183_DEL [dm3] 3L_11557083_DEL [dm6]	GTG	G	4.160e^-4	0.822	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13353812	2R_13353812_SNP [dm3] 2R_17466307_SNP [dm6]	G	T	4.163e^-4	0.822	UTR_3_PRIME Tes DOWNSTREAM CG14478	TF binding site BDTNP1_TFBS_dl
2R	7226624	2R_7226624_SNP [dm3] 2R_11339119_SNP [dm6]	T	C	4.169e^-4	0.822	UPSTREAM kappaTry DOWNSTREAM zetaTry INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2L	3455537	2L_3455537_SNP [dm3] 2L_3455537_SNP [dm6]	T	A	4.173e^-4	0.822	INTRON Cog3
2L	11857374	2L_11857374_SNP [dm3] 2L_11857374_SNP [dm6]	G	T	4.173e^-4	0.822	INTRON Pde1c
3R	26295804	3R_26295804_SNP [dm3] 3R_30470082_SNP [dm6]	G	A	4.175e^-4	0.822	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17288799	3R_17288799_SNP [dm3] 3R_21463077_SNP [dm6]	A	G	4.181e^-4	0.822	INTERGENIC
3R	25164279	3R_25164279_SNP [dm3] 3R_29338557_SNP [dm6]	T	C	4.190e^-4	0.822	INTERGENIC
2R	17735831	2R_17735831_SNP [dm3] 2R_21848326_SNP [dm6]	A	G	4.190e^-4	0.822	DOWNSTREAM tRNA:CR30406 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15851277	3R_15851277_SNP [dm3] 3R_20025555_SNP [dm6]	G	A	4.210e^-4	0.822	SYNONYMOUS_CODING psidin DOWNSTREAM CG4424	TF binding site mE1_TFBS_cad
2L	18152833	2L_18152833_SNP [dm3] 2L_18152833_SNP [dm6]	G	A	4.212e^-4	0.822	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	27172299	3R_27172299_SNP [dm3] 3R_31346577_SNP [dm6]	C	T	4.214e^-4	0.822	INTRON CG34347
3L	677350	3L_677350_SNP [dm3] 3L_677350_SNP [dm6]	G	A	4.215e^-4	0.822	DOWNSTREAM CG17129 INTERGENIC
3L	15260834	3L_15260834_SNP [dm3] 3L_15267734_SNP [dm6]	T	A	4.232e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA
X	5533915	X_5533915_SNP [dm3] X_5639882_SNP [dm6]	C	A	4.239e^-4	0.822	INTRON CG42492
2L	18648517	2L_18648517_SNP [dm3] 2L_18648517_SNP [dm6]	T	C	4.249e^-4	0.822	INTRON MESR3
2L	11329080	2L_11329080_SNP [dm3] 2L_11329080_SNP [dm6]	T	A	4.251e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25872928	3R_25872928_SNP [dm3] 3R_30047206_SNP [dm6]	G	T	4.254e^-4	0.822	SYNONYMOUS_CODING CG7943	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26757434	3R_26757434_SNP [dm3] 3R_30931712_SNP [dm6]	G	A	4.260e^-4	0.822	INTERGENIC
2L	13730689	2L_13730689_SNP [dm3] 2L_13730689_SNP [dm6]	C	T	4.261e^-4	0.822	INTERGENIC
3L	12107996	3L_12107996_SNP [dm3] 3L_12114896_SNP [dm6]	A	G	4.263e^-4	0.822	INTERGENIC
2L	10125214	2L_10125214_SNP [dm3] 2L_10125214_SNP [dm6]	T	A	4.281e^-4	0.822	SYNONYMOUS_CODING CG34109 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9978492	3L_9978492_SNP [dm3] 3L_9985392_SNP [dm6]	G	A	4.281e^-4	0.822	INTRON dpr6
3R	8099879	3R_8099879_SNP [dm3] 3R_12274157_SNP [dm6]	C	T	4.288e^-4	0.822	DOWNSTREAM Sfp87B INTRON svp
2L	3234271	2L_3234271_SNP [dm3] 2L_3234271_SNP [dm6]	T	C	4.291e^-4	0.822	INTERGENIC
X	16364006	X_16364006_SNP [dm3] X_16469973_SNP [dm6]	A	G	4.301e^-4	0.822	INTRON para
2L	12483887	2L_12483887_SNP [dm3] 2L_12483887_SNP [dm6]	A	G	4.305e^-4	0.822	UPSTREAM bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	5725583	2L_5725583_SNP [dm3] 2L_5725583_SNP [dm6]	C	T	4.314e^-4	0.822	DOWNSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	21447449	3L_21447449_SNP [dm3] 3L_21454349_SNP [dm6]	G	A	4.315e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3R	13882795	3R_13882795_SNP [dm3] 3R_18057073_SNP [dm6]	T	C	4.317e^-4	0.822	INTERGENIC
3R	14233814	3R_14233814_SNP [dm3] 3R_18408092_SNP [dm6]	C	T	4.319e^-4	0.822	SYNONYMOUS_CODING CG31122	TF binding site BDTNP1_TFBS_da
X	17046711	X_17046711_SNP [dm3] X_17152678_SNP [dm6]	C	T	4.322e^-4	0.822	NON_SYNONYMOUS_CODING xmas-1
3L	11450634	3L_11450634_SNP [dm3] 3L_11457534_SNP [dm6]	G	A	4.325e^-4	0.822	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	461296	X_461296_DEL [dm3] X_567263_DEL [dm6]	GAATTCGGCTTG...	G	4.345e^-4	0.822	INTRON Appl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15870202	3R_15870202_SNP [dm3] 3R_20044480_SNP [dm6]	C	T	4.348e^-4	0.822	INTRON CG17193 & 2 others
3R	15870208	3R_15870208_SNP [dm3] 3R_20044486_SNP [dm6]	G	A	4.348e^-4	0.822	INTRON CG17193 & 2 others
2R	7898131	2R_7898131_SNP [dm3] 2R_12010626_SNP [dm6]	G	A	4.355e^-4	0.822	INTRON otk	regulatory region REDfly_CRMs
3L	12107942	3L_12107942_SNP [dm3] 3L_12114842_SNP [dm6]	A	G	4.369e^-4	0.822	INTERGENIC
2L	244878	2L_244878_SNP [dm3] 2L_244878_SNP [dm6]	T	A	4.369e^-4	0.822	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21054237	2L_21054237_SNP [dm3] 2L_21054237_SNP [dm6]	C	T	4.399e^-4	0.822	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_dl
2R	13716188	2R_13716188_SNP [dm3] 2R_17828683_SNP [dm6]	C	T	4.418e^-4	0.822	INTRON grh
3R	18445423	3R_18445423_SNP [dm3] 3R_22619701_SNP [dm6]	C	A	4.418e^-4	0.822	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
2L	19383086	2L_19383086_SNP [dm3] 2L_19383086_SNP [dm6]	A	G	4.425e^-4	0.822	UTR_3_PRIME CG17350 DOWNSTREAM fon	TF binding site mE1_TFBS_cad
3R	19464390	3R_19464390_SNP [dm3] 3R_23638668_SNP [dm6]	G	T	4.428e^-4	0.822	INTRON CG31145
2L	19547607	2L_19547607_SNP [dm3] 2L_19547607_SNP [dm6]	C	A	4.433e^-4	0.822	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16065801	2L_16065801_SNP [dm3] 2L_16065801_SNP [dm6]	T	A	4.434e^-4	0.822	INTRON beat-Ia
2R	3578982	2R_3578982_DEL [dm3] 2R_7691477_DEL [dm6]	TCCACTTTTT	T	4.455e^-4	0.822	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6441144	2R_6441144_SNP [dm3] 2R_10553639_SNP [dm6]	G	A	4.457e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	1244952	2L_1244952_SNP [dm3] 2L_1244952_SNP [dm6]	T	C	4.458e^-4	0.822	INTERGENIC
3R	13845572	3R_13845572_SNP [dm3] 3R_18019850_SNP [dm6]	G	C	4.476e^-4	0.822	DOWNSTREAM cpo INTRON DNaseII
2L	13004842	2L_13004842_SNP [dm3] 2L_13004842_SNP [dm6]	G	A	4.484e^-4	0.822	SYNONYMOUS_CODING Tor UPSTREAM Vha68-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	17347301	3R_17347301_MNP [dm3] 3R_21521579_MNP [dm6]	ATT	TCC	4.485e^-4	0.822	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10205727	3L_10205727_SNP [dm3] 3L_10212627_SNP [dm6]	T	A	4.486e^-4	0.822	INTERGENIC
3L	12107915	3L_12107915_SNP [dm3] 3L_12114815_SNP [dm6]	A	G	4.491e^-4	0.822	INTERGENIC
2R	9792455	2R_9792455_SNP [dm3] 2R_13904950_SNP [dm6]	T	A	4.491e^-4	0.822	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7446098	2R_7446098_SNP [dm3] 2R_11558593_SNP [dm6]	A	G	4.493e^-4	0.822	INTERGENIC
2R	9692780	2R_9692780_SNP [dm3] 2R_13805275_SNP [dm6]	T	A	4.506e^-4	0.822	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
2L	8957397	2L_8957397_SNP [dm3] 2L_8957397_SNP [dm6]	C	A	4.506e^-4	0.822	INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	6435165	3L_6435165_SNP [dm3] 3L_6442065_SNP [dm6]	A	G	4.511e^-4	0.822	INTRON CG42747	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	4.513e^-4	0.822	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8618817	3L_8618817_SNP [dm3] 3L_8625717_SNP [dm6]	A	G	4.517e^-4	0.822	UPSTREAM Zasp66 INTRON Zasp66
3L	12084748	3L_12084748_SNP [dm3] 3L_12091648_SNP [dm6]	C	T	4.528e^-4	0.822	INTERGENIC
2R	15316396	2R_15316396_SNP [dm3] 2R_19428891_SNP [dm6]	A	C	4.530e^-4	0.822	UTR_3_PRIME CalpA INTRON CalpA
2R	9509392	2R_9509392_SNP [dm3] 2R_13621887_SNP [dm6]	A	G	4.530e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17343463	3R_17343463_SNP [dm3] 3R_21517741_SNP [dm6]	C	T	4.532e^-4	0.822	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20862618	2L_20862618_SNP [dm3] 2L_20862618_SNP [dm6]	G	A	4.534e^-4	0.822	EXON CR9337

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.140e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03203

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.339	0.0693

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2099 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	7938226	2R_7938226_SNP [dm3] 2R_12050721_SNP [dm6]	G	A	5.290e^-6	0.878	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
2L	10041256	2L_10041256_SNP [dm3] 2L_10041256_SNP [dm6]	T	C	6.118e^-6	0.878	INTERGENIC
3R	15651069	3R_15651069_SNP [dm3] 3R_19825347_SNP [dm6]	G	A	6.606e^-6	0.878	INTRON bnl
X	17817546	X_17817546_SNP [dm3] X_17923513_SNP [dm6]	C	G	6.806e^-6	0.878	SYNONYMOUS_CODING CG6847 DOWNSTREAM Sh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	17857779	3R_17857779_SNP [dm3] 3R_22032057_SNP [dm6]	C	G	7.633e^-6	0.878	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26628771	3R_26628771_SNP [dm3] 3R_30803049_SNP [dm6]	A	G	7.940e^-6	0.878	INTRON wts	TF binding site BDTNP1_TFBS_Med mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14444228	3R_14444228_SNP [dm3] 3R_18618506_SNP [dm6]	C	T	8.658e^-6	0.878	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3L	21330738	3L_21330738_SNP [dm3] 3L_21337638_SNP [dm6]	C	T	9.820e^-6	0.878	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3R	23678546	3R_23678546_SNP [dm3] 3R_27852824_SNP [dm6]	T	C	9.955e^-6	0.878	INTRON CG34353
2R	7938227	2R_7938227_SNP [dm3] 2R_12050722_SNP [dm6]	G	A	1.003e^-5	0.878	DOWNSTREAM CG30039 & 1 other INTERGENIC	TF binding site mE1_TFBS_sbb
2L	10041286	2L_10041286_SNP [dm3] 2L_10041286_SNP [dm6]	A	T	1.035e^-5	0.878	INTERGENIC
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	1.044e^-5	0.878	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16314933	2L_16314933_SNP [dm3] 2L_16314933_SNP [dm6]	G	A	1.079e^-5	0.878	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10873784	2R_10873784_SNP [dm3] 2R_14986279_SNP [dm6]	G	A	1.113e^-5	0.878	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	16318739	2L_16318739_DEL [dm3] 2L_16318739_DEL [dm6]	TT	T	1.257e^-5	0.878	INTRON cact
2R	7954540	2R_7954540_SNP [dm3] 2R_12067035_SNP [dm6]	G	A	1.347e^-5	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1
3L	21330687	3L_21330687_SNP [dm3] 3L_21337587_SNP [dm6]	T	C	1.373e^-5	0.878	SYNONYMOUS_CODING CG7338 DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
2R	7954524	2R_7954524_SNP [dm3] 2R_12067019_SNP [dm6]	A	G	1.376e^-5	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1
3L	21339896	3L_21339896_SNP [dm3] 3L_21346796_SNP [dm6]	C	T	1.444e^-5	0.878	UTR_5_PRIME ebd2 INTRON CG32436	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	3425214	2L_3425214_SNP [dm3] 2L_3425214_SNP [dm6]	G	C	1.481e^-5	0.878	INTRON pgant2
3R	20549574	3R_20549574_SNP [dm3] 3R_24723852_SNP [dm6]	A	G	1.558e^-5	0.878	INTRON tok EXON snoRNA:Me18S-C1280
2R	7954509	2R_7954509_SNP [dm3] 2R_12067004_SNP [dm6]	A	T	1.657e^-5	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1
3L	21328215	3L_21328215_SNP [dm3] 3L_21335115_SNP [dm6]	T	C	1.658e^-5	0.878	UPSTREAM CG7338 DOWNSTREAM Rab26 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	11457462	3L_11457462_SNP [dm3] 3L_11464362_SNP [dm6]	G	A	1.687e^-5	0.878	SYNONYMOUS_CODING CG6140	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5737691	3L_5737691_SNP [dm3] 3L_5744591_SNP [dm6]	A	G	1.721e^-5	0.878	UTR_3_PRIME sif INTRON sif
X	14583755	X_14583755_SNP [dm3] X_14689722_SNP [dm6]	A	T	1.800e^-5	0.878	UTR_3_PRIME NetB
2R	7938117	2R_7938117_SNP [dm3] 2R_12050612_SNP [dm6]	C	T	1.821e^-5	0.878	DOWNSTREAM CG30039 & 1 other INTERGENIC
2R	11988621	2R_11988621_SNP [dm3] 2R_16101116_SNP [dm6]	C	T	1.873e^-5	0.878	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
X	7379960	X_7379960_SNP [dm3] X_7485927_SNP [dm6]	G	C	1.909e^-5	0.878	INTERGENIC
2R	7897996	2R_7897996_SNP [dm3] 2R_12010491_SNP [dm6]	A	T	1.990e^-5	0.878	INTRON otk	regulatory region REDfly_CRMs
2R	10194124	2R_10194124_SNP [dm3] 2R_14306619_SNP [dm6]	T	G	2.009e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	20504699	2R_20504699_DEL [dm3] 2R_24617176_DEL [dm6]	TCGTCCTTT	T	2.022e^-5	0.878	INTRON CG13594
2R	11989343	2R_11989343_SNP [dm3] 2R_16101838_SNP [dm6]	T	C	2.027e^-5	0.878	NON_SYNONYMOUS_CODING CG8414 UPSTREAM Rho1	TF binding site BDTNP1_TFBS_dl
2L	12859178	2L_12859178_SNP [dm3] 2L_12859178_SNP [dm6]	A	T	2.032e^-5	0.878	INTERGENIC
3L	21339631	3L_21339631_SNP [dm3] 3L_21346531_SNP [dm6]	G	T	2.087e^-5	0.878	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	2809127	3R_2809127_SNP [dm3] 3R_6983405_SNP [dm6]	C	G	2.131e^-5	0.878	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2328767	X_2328767_SNP [dm3] X_2434734_SNP [dm6]	T	C	2.135e^-5	0.878	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4678286	2L_4678286_SNP [dm3] 2L_4678286_SNP [dm6]	C	T	2.253e^-5	0.878	INTERGENIC
3R	14033185	3R_14033185_SNP [dm3] 3R_18207463_SNP [dm6]	G	T	2.320e^-5	0.878	INTRON CG7985
2R	16070007	2R_16070007_SNP [dm3] 2R_20182502_SNP [dm6]	A	C	2.508e^-5	0.878	INTERGENIC
3L	13396948	3L_13396948_SNP [dm3] 3L_13403848_SNP [dm6]	C	T	2.618e^-5	0.878	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	21902561	2L_21902561_DEL [dm3] 2L_21902561_DEL [dm6]	ATACAGCCATGCCGGTCGTA...	A	2.662e^-5	0.878	UPSTREAM CG1421 INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	19455151	2L_19455151_SNP [dm3] 2L_19455151_SNP [dm6]	G	C	2.683e^-5	0.878	UPSTREAM CG10026 INTRON CG10026
2L	11475788	2L_11475788_SNP [dm3] 2L_11475788_SNP [dm6]	G	A	2.734e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2R	7934715	2R_7934715_SNP [dm3] 2R_12047210_SNP [dm6]	A	G	2.736e^-5	0.878	INTRON Drep-1
3R	13415677	3R_13415677_SNP [dm3] 3R_17589955_SNP [dm6]	C	A	2.742e^-5	0.878	INTERGENIC
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	2.775e^-5	0.878	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	7935943	2R_7935943_SNP [dm3] 2R_12048438_SNP [dm6]	A	G	2.802e^-5	0.878	INTRON Drep-1
2R	7897994	2R_7897994_SNP [dm3] 2R_12010489_SNP [dm6]	T	C	2.804e^-5	0.878	INTRON otk	regulatory region REDfly_CRMs
2R	11325821	2R_11325821_SNP [dm3] 2R_15438316_SNP [dm6]	T	G	2.844e^-5	0.878	INTRON CG43729
2R	6975347	2R_6975347_INS [dm3] 2R_11087842_INS [dm6]	T	TCGTCTAGGTT...	2.887e^-5	0.878	UPSTREAM CG43189 INTRON luna & 1 other	TF binding site mE1_TFBS_Kr
2R	10869125	2R_10869125_DEL [dm3] 2R_14981620_DEL [dm6]	ACA	A	3.032e^-5	0.878	UTR_5_PRIME pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl mE1_TFBS_Ubx
3L	11930361	3L_11930361_SNP [dm3] 3L_11937261_SNP [dm6]	T	C	3.117e^-5	0.878	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5257565	X_5257565_SNP [dm3] X_5363532_SNP [dm6]	T	C	3.120e^-5	0.878	INTRON SK	TF binding site BDTNP1_TFBS_dl
3R	17857857	3R_17857857_SNP [dm3] 3R_22032135_SNP [dm6]	G	T	3.189e^-5	0.878	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19564425	2L_19564425_SNP [dm3] 2L_19564425_SNP [dm6]	G	A	3.207e^-5	0.878	NON_SYNONYMOUS_CODING CG13078	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17857865	3R_17857865_SNP [dm3] 3R_22032143_SNP [dm6]	G	C	3.239e^-5	0.878	UPSTREAM CG13409 DOWNSTREAM CG6015 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12644266	3R_12644266_INS [dm3] 3R_16818544_INS [dm6]	G	GCAAG	3.308e^-5	0.878	INTRON abd-A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5737689	3L_5737689_SNP [dm3] 3L_5744589_SNP [dm6]	A	G	3.351e^-5	0.878	UTR_3_PRIME sif INTRON sif
3L	13399425	3L_13399425_SNP [dm3] 3L_13406325_SNP [dm6]	C	A	3.367e^-5	0.878	INTERGENIC
2R	17721197	2R_17721197_SNP [dm3] 2R_21833692_SNP [dm6]	C	T	3.417e^-5	0.878	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2L	10061031	2L_10061031_SNP [dm3] 2L_10061031_SNP [dm6]	C	G	3.426e^-5	0.878	DOWNSTREAM Pen INTRON Spn31A
3L	21329575	3L_21329575_SNP [dm3] 3L_21336475_SNP [dm6]	C	G	3.430e^-5	0.878	NON_SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10050922	2L_10050922_SNP [dm3] 2L_10050922_SNP [dm6]	T	C	3.436e^-5	0.878	UTR_3_PRIME CG33301 UPSTREAM CR44874
2L	12859179	2L_12859179_SNP [dm3] 2L_12859179_SNP [dm6]	A	G	3.484e^-5	0.878	INTERGENIC
2R	16070005	2R_16070005_SNP [dm3] 2R_20182500_SNP [dm6]	A	T	3.682e^-5	0.878	INTERGENIC
2R	6740279	2R_6740279_SNP [dm3] 2R_10852774_SNP [dm6]	T	A	3.722e^-5	0.878	UPSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
2L	4156566	2L_4156566_SNP [dm3] 2L_4156566_SNP [dm6]	T	A	3.749e^-5	0.878	INTERGENIC
X	16112964	X_16112964_SNP [dm3] X_16218931_SNP [dm6]	A	C	3.927e^-5	0.878	INTERGENIC
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	4.008e^-5	0.878	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14515417	X_14515417_SNP [dm3] X_14621384_SNP [dm6]	G	T	4.011e^-5	0.878	INTRON NetA
3L	15420539	3L_15420539_SNP [dm3] 3L_15427439_SNP [dm6]	T	A	4.033e^-5	0.878	INTERGENIC
2R	7939276	2R_7939276_SNP [dm3] 2R_12051771_SNP [dm6]	A	T	4.229e^-5	0.878	UPSTREAM CG30039 INTERGENIC
2R	7948914	2R_7948914_SNP [dm3] 2R_12061409_SNP [dm6]	G	T	4.244e^-5	0.878	INTRON Drep-3
3R	26755624	3R_26755624_SNP [dm3] 3R_30929902_SNP [dm6]	T	G	4.256e^-5	0.878	SYNONYMOUS_CODING Ptx1 UTR_3_PRIME Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	4.299e^-5	0.878	INTRON Tgi
2L	10061044	2L_10061044_SNP [dm3] 2L_10061044_SNP [dm6]	C	T	4.435e^-5	0.878	DOWNSTREAM Pen INTRON Spn31A
2R	7954367	2R_7954367_SNP [dm3] 2R_12066862_SNP [dm6]	C	G	4.450e^-5	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	11989315	2R_11989315_SNP [dm3] 2R_16101810_SNP [dm6]	A	T	4.451e^-5	0.878	UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl
2R	11988893	2R_11988893_SNP [dm3] 2R_16101388_SNP [dm6]	C	A	4.464e^-5	0.878	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
2R	7953676	2R_7953676_SNP [dm3] 2R_12066171_SNP [dm6]	G	A	4.505e^-5	0.878	INTRON CG8888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20878366	2L_20878366_SNP [dm3] 2L_20878366_SNP [dm6]	C	G	4.584e^-5	0.878	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	17721602	2R_17721602_SNP [dm3] 2R_21834097_SNP [dm6]	T	A	4.597e^-5	0.878	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2R	9792455	2R_9792455_SNP [dm3] 2R_13904950_SNP [dm6]	T	A	4.614e^-5	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10869319	2R_10869319_SNP [dm3] 2R_14981814_SNP [dm6]	C	T	4.638e^-5	0.878	SYNONYMOUS_CODING pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	1348651	2L_1348651_SNP [dm3] 2L_1348651_SNP [dm6]	A	G	4.641e^-5	0.878	INTERGENIC
3R	24100072	3R_24100072_SNP [dm3] 3R_28274350_SNP [dm6]	C	T	4.646e^-5	0.878	INTERGENIC
2R	7954518	2R_7954518_SNP [dm3] 2R_12067013_SNP [dm6]	T	C	4.751e^-5	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1
2R	10864069	2R_10864069_SNP [dm3] 2R_14976564_SNP [dm6]	C	G	4.754e^-5	0.878	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	12445302	2L_12445302_SNP [dm3] 2L_12445302_SNP [dm6]	G	C	4.788e^-5	0.878	DOWNSTREAM CG5421 INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4156517	2L_4156517_SNP [dm3] 2L_4156517_SNP [dm6]	G	A	4.865e^-5	0.878	INTERGENIC
3L	1263330	3L_1263330_SNP [dm3] 3L_1263330_SNP [dm6]	T	G	4.982e^-5	0.878	INTRON CG9134
X	18451608	X_18451608_SNP [dm3] X_18557575_SNP [dm6]	G	T	4.998e^-5	0.878	INTRON Bx
X	11333498	X_11333498_SNP [dm3] X_11439465_SNP [dm6]	G	T	5.026e^-5	0.878	INTRON Evi5
X	21461883	X_21461883_SNP [dm3] X_21590856_SNP [dm6]	A	C	5.113e^-5	0.878	INTERGENIC
2R	16069916	2R_16069916_DEL [dm3] 2R_20182411_DEL [dm6]	GG	G	5.123e^-5	0.878	INTERGENIC
3L	18573428	3L_18573428_SNP [dm3] 3L_18580328_SNP [dm6]	T	A	5.144e^-5	0.878	INTERGENIC
3R	17931845	3R_17931845_SNP [dm3] 3R_22106123_SNP [dm6]	C	T	5.193e^-5	0.878	DOWNSTREAM CG13407 INTRON CG5778
3R	7807089	3R_7807089_SNP [dm3] 3R_11981367_SNP [dm6]	G	A	5.266e^-5	0.878	NON_SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12859181	2L_12859181_DEL [dm3] 2L_12859181_DEL [dm6]	CTTA	C	5.332e^-5	0.878	INTERGENIC
3L	7560256	3L_7560256_SNP [dm3] 3L_7567156_SNP [dm6]	G	A	5.412e^-5	0.878	NON_SYNONYMOUS_CODING frac	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1239044	2L_1239044_DEL [dm3] 2L_1239044_DEL [dm6]	TGCGT	T	5.520e^-5	0.878	UPSTREAM CG5397 INTERGENIC
3L	1105172	3L_1105172_SNP [dm3] 3L_1105172_SNP [dm6]	T	C	5.539e^-5	0.878	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12376010	3L_12376010_SNP [dm3] 3L_12382910_SNP [dm6]	G	A	5.541e^-5	0.878	INTRON Ncc69
3R	9498329	3R_9498329_SNP [dm3] 3R_13672607_SNP [dm6]	A	T	5.569e^-5	0.878	UTR_5_PRIME Task6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7813344	2R_7813344_SNP [dm3] 2R_11925839_SNP [dm6]	T	A	5.604e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	5.717e^-5	0.878	SYNONYMOUS_CODING CG15210 INTRON sbr
3R	19719397	3R_19719397_SNP [dm3] 3R_23893675_SNP [dm6]	T	G	5.730e^-5	0.878	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
2L	20941098	2L_20941098_SNP [dm3] 2L_20941098_SNP [dm6]	G	T	5.778e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16070009	2R_16070009_SNP [dm3] 2R_20182504_SNP [dm6]	T	G	5.862e^-5	0.878	INTERGENIC
2R	18722452	2R_18722452_SNP [dm3] 2R_22834929_SNP [dm6]	T	G	5.866e^-5	0.878	DOWNSTREAM CG30265 INTRON CG12490
2R	17721601	2R_17721601_SNP [dm3] 2R_21834096_SNP [dm6]	A	T	5.882e^-5	0.878	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
3R	13415691	3R_13415691_SNP [dm3] 3R_17589969_SNP [dm6]	T	C	6.076e^-5	0.878	INTERGENIC
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	6.104e^-5	0.878	INTRON fas
3R	23234650	3R_23234650_SNP [dm3] 3R_27408928_SNP [dm6]	T	C	6.138e^-5	0.878	INTRON side
2L	12439700	2L_12439700_SNP [dm3] 2L_12439700_SNP [dm6]	A	C	6.162e^-5	0.878	UTR_3_PRIME Elf
3L	11575268	3L_11575268_SNP [dm3] 3L_11582168_SNP [dm6]	A	C	6.170e^-5	0.878	UTR_5_PRIME CG33269 DOWNSTREAM CG32086
3R	7807078	3R_7807078_SNP [dm3] 3R_11981356_SNP [dm6]	A	C	6.267e^-5	0.878	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19661270	X_19661270_SNP [dm3] X_19767237_SNP [dm6]	C	T	6.337e^-5	0.878	UTR_3_PRIME vfl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8567259	3R_8567259_SNP [dm3] 3R_12741537_SNP [dm6]	C	G	6.344e^-5	0.878	DOWNSTREAM CG5999 & 1 other INTERGENIC
3L	18567437	3L_18567437_SNP [dm3] 3L_18574337_SNP [dm6]	T	C	6.345e^-5	0.878	SYNONYMOUS_CODING AstC-R1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21054138	2L_21054138_SNP [dm3] 2L_21054138_SNP [dm6]	T	C	6.438e^-5	0.878	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26755621	3R_26755621_SNP [dm3] 3R_30929899_SNP [dm6]	G	A	6.547e^-5	0.878	SYNONYMOUS_CODING Ptx1 UTR_3_PRIME Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	968988	2L_968988_INS [dm3] 2L_968988_INS [dm6]	A	AT	6.651e^-5	0.878	INTERGENIC
3L	4685558	3L_4685558_SNP [dm3] 3L_4685558_SNP [dm6]	C	A	6.735e^-5	0.878	INTRON axo
X	10061032	X_10061032_SNP [dm3] X_10166999_SNP [dm6]	A	G	6.789e^-5	0.878	INTRON CR44894 & 1 other
2R	10873831	2R_10873831_SNP [dm3] 2R_14986326_SNP [dm6]	A	T	6.873e^-5	0.878	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7898131	2R_7898131_SNP [dm3] 2R_12010626_SNP [dm6]	G	A	6.893e^-5	0.878	INTRON otk	regulatory region REDfly_CRMs
X	6601168	X_6601168_SNP [dm3] X_6707135_SNP [dm6]	A	T	6.954e^-5	0.878	INTRON CG14441	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12333070	3R_12333070_SNP [dm3] 3R_16507348_SNP [dm6]	C	T	6.992e^-5	0.878	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12333071	3R_12333071_SNP [dm3] 3R_16507349_SNP [dm6]	A	T	6.992e^-5	0.878	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15289837	2L_15289837_SNP [dm3] 2L_15289837_SNP [dm6]	C	T	7.009e^-5	0.878	INTERGENIC
2L	20935961	2L_20935961_SNP [dm3] 2L_20935961_SNP [dm6]	T	C	7.017e^-5	0.878	INTERGENIC
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	7.049e^-5	0.878	UTR_3_PRIME CG31030
3R	20403856	3R_20403856_SNP [dm3] 3R_24578134_SNP [dm6]	T	C	7.053e^-5	0.878	UPSTREAM CG13624 INTRON CG13624
2L	19123118	2L_19123118_SNP [dm3] 2L_19123118_SNP [dm6]	C	T	7.126e^-5	0.878	SPLICE_SITE_REGION l_2_37Cc DOWNSTREAM l_2_37Cb INTRON l_2_37Cc
3L	12067740	3L_12067740_SNP [dm3] 3L_12074640_SNP [dm6]	G	A	7.157e^-5	0.878	INTRON Sema-5c
2R	14959845	2R_14959845_SNP [dm3] 2R_19072340_SNP [dm6]	A	G	7.186e^-5	0.878	INTRON 5-HT1A
2R	7938185	2R_7938185_SNP [dm3] 2R_12050680_SNP [dm6]	G	A	7.212e^-5	0.878	DOWNSTREAM CG30039 & 1 other INTERGENIC
3R	23546624	3R_23546624_SNP [dm3] 3R_27720902_SNP [dm6]	C	G	7.232e^-5	0.878	INTERGENIC
3R	25177846	3R_25177846_SNP [dm3] 3R_29352124_SNP [dm6]	C	T	7.287e^-5	0.878	INTERGENIC
2L	19564451	2L_19564451_SNP [dm3] 2L_19564451_SNP [dm6]	C	T	7.375e^-5	0.878	SYNONYMOUS_CODING CG13078	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15311653	3R_15311653_SNP [dm3] 3R_19485931_SNP [dm6]	A	T	7.563e^-5	0.878	SYNONYMOUS_CODING Dys
3R	18985093	3R_18985093_SNP [dm3] 3R_23159371_SNP [dm6]	A	T	7.569e^-5	0.878	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7549079	3L_7549079_SNP [dm3] 3L_7555979_SNP [dm6]	A	T	7.579e^-5	0.878	SYNONYMOUS_CODING CG14837
2R	10873822	2R_10873822_SNP [dm3] 2R_14986317_SNP [dm6]	G	T	7.657e^-5	0.878	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	10061034	2L_10061034_DEL [dm3] 2L_10061034_DEL [dm6]	TCGGTAGTT	T	7.684e^-5	0.878	DOWNSTREAM Pen INTRON Spn31A
2R	15733949	2R_15733949_SNP [dm3] 2R_19846444_SNP [dm6]	C	T	7.705e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	7.707e^-5	0.878	INTRON CG43729
2R	11340059	2R_11340059_SNP [dm3] 2R_15452554_SNP [dm6]	T	C	7.707e^-5	0.878	INTRON CG43729
X	18047214	X_18047214_SNP [dm3] X_18153181_SNP [dm6]	A	C	7.730e^-5	0.878	INTERGENIC
3L	9034005	3L_9034005_SNP [dm3] 3L_9040905_SNP [dm6]	C	A	7.797e^-5	0.878	UPSTREAM Doc1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	13822924	2L_13822924_SNP [dm3] 2L_13822924_SNP [dm6]	C	T	7.801e^-5	0.878	SYNONYMOUS_CODING b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17344092	3R_17344092_SNP [dm3] 3R_21518370_SNP [dm6]	A	T	7.858e^-5	0.878	INTERGENIC
2R	12333720	2R_12333720_SNP [dm3] 2R_16446215_SNP [dm6]	T	A	7.917e^-5	0.878	UTR_5_PRIME CG15925
2L	17035446	2L_17035446_SNP [dm3] 2L_17035446_SNP [dm6]	C	T	8.049e^-5	0.878	INTERGENIC
2L	9580330	2L_9580330_SNP [dm3] 2L_9580330_SNP [dm6]	C	A	8.146e^-5	0.878	SYNONYMOUS_CODING gcm UPSTREAM CG31709	TF binding site mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	26031253	3R_26031253_SNP [dm3] 3R_30205531_SNP [dm6]	A	C	8.151e^-5	0.878	DOWNSTREAM RpS7 INTERGENIC
3R	12332984	3R_12332984_SNP [dm3] 3R_16507262_SNP [dm6]	A	G	8.245e^-5	0.878	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
2L	12692474	2L_12692474_SNP [dm3] 2L_12692474_SNP [dm6]	T	C	8.246e^-5	0.878	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	12323459	3R_12323459_SNP [dm3] 3R_16497737_SNP [dm6]	A	C	8.315e^-5	0.878	DOWNSTREAM Gr89a INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12859164	2L_12859164_SNP [dm3] 2L_12859164_SNP [dm6]	T	C	8.334e^-5	0.878	INTERGENIC
2L	12859166	2L_12859166_DEL [dm3] 2L_12859166_DEL [dm6]	ATATACCA	A	8.334e^-5	0.878	INTERGENIC
3R	17614034	3R_17614034_INS [dm3] 3R_21788312_INS [dm6]	T	TT	8.430e^-5	0.878	INTRON CASK
3L	13492182	3L_13492182_SNP [dm3] 3L_13499082_SNP [dm6]	G	A	8.444e^-5	0.878	INTRON Tgi
2L	12867431	2L_12867431_SNP [dm3] 2L_12867431_SNP [dm6]	G	C	8.453e^-5	0.878	INTERGENIC
3L	14893907	3L_14893907_SNP [dm3] 3L_14900807_SNP [dm6]	A	G	8.509e^-5	0.878	INTERGENIC
2R	7938208	2R_7938208_SNP [dm3] 2R_12050703_SNP [dm6]	A	G	8.530e^-5	0.878	DOWNSTREAM CG30039 & 1 other INTERGENIC
2L	1352394	2L_1352394_SNP [dm3] 2L_1352394_SNP [dm6]	C	T	8.714e^-5	0.878	SYNONYMOUS_CODING CG5556 DOWNSTREAM CG5561
2R	9737872	2R_9737872_SNP [dm3] 2R_13850367_SNP [dm6]	G	A	8.805e^-5	0.878	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3L	21348830	3L_21348830_SNP [dm3] 3L_21355730_SNP [dm6]	G	A	8.922e^-5	0.878	SYNONYMOUS_CODING CG12971 DOWNSTREAM CG32436	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11988753	2R_11988753_SNP [dm3] 2R_16101248_SNP [dm6]	T	C	9.035e^-5	0.878	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3R	24100324	3R_24100324_SNP [dm3] 3R_28274602_SNP [dm6]	A	T	9.057e^-5	0.878	INTERGENIC
2R	7401467	2R_7401467_SNP [dm3] 2R_11513962_SNP [dm6]	C	T	9.209e^-5	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13391390	3L_13391390_SNP [dm3] 3L_13398290_SNP [dm6]	C	G	9.235e^-5	0.878	INTRON sens	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19719409	3R_19719409_SNP [dm3] 3R_23893687_SNP [dm6]	A	C	9.309e^-5	0.878	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
2L	10041163	2L_10041163_SNP [dm3] 2L_10041163_SNP [dm6]	T	A	9.371e^-5	0.878	INTERGENIC
3L	11427390	3L_11427390_SNP [dm3] 3L_11434290_SNP [dm6]	G	A	9.380e^-5	0.878	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	21329260	3L_21329260_SNP [dm3] 3L_21336160_SNP [dm6]	A	G	9.436e^-5	0.878	SYNONYMOUS_CODING CG7338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	13845572	3R_13845572_SNP [dm3] 3R_18019850_SNP [dm6]	G	C	9.477e^-5	0.878	DOWNSTREAM cpo INTRON DNaseII
2L	21839274	2L_21839274_SNP [dm3] 2L_21839274_SNP [dm6]	C	T	9.534e^-5	0.878	INTERGENIC
2R	17432759	2R_17432759_SNP [dm3] 2R_21545254_SNP [dm6]	C	A	9.616e^-5	0.878	INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23546613	3R_23546613_SNP [dm3] 3R_27720891_SNP [dm6]	A	G	9.640e^-5	0.878	INTERGENIC
2L	8679204	2L_8679204_SNP [dm3] 2L_8679204_SNP [dm6]	T	C	9.680e^-5	0.878	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2L	20694983	2L_20694983_SNP [dm3] 2L_20694983_SNP [dm6]	A	C	9.758e^-5	0.878	INTRON Hr38	TF binding site mE1_TFBS_sens
2R	19830996	2R_19830996_SNP [dm3] 2R_23943473_SNP [dm6]	C	T	9.942e^-5	0.878	UPSTREAM Galphas INTRON Galphas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17687082	3L_17687082_SNP [dm3] 3L_17693982_SNP [dm6]	C	A	1.000e^-4	0.878	INTRON Ccn
3L	4951402	3L_4951402_DEL [dm3] 3L_4951402_DEL [dm6]	ACA	A	1.000e^-4	0.878	INTRON Con	TF binding site mE1_TFBS_chinmo
2R	15316572	2R_15316572_SNP [dm3] 2R_19429067_SNP [dm6]	A	T	1.004e^-4	0.878	DOWNSTREAM CalpA INTRON CalpA
2L	19843629	2L_19843629_SNP [dm3] 2L_19843629_SNP [dm6]	T	G	1.006e^-4	0.878	INTRON sick
2R	17301790	2R_17301790_SNP [dm3] 2R_21414285_SNP [dm6]	G	C	1.009e^-4	0.878	INTRON Sdc
3R	5151458	3R_5151458_SNP [dm3] 3R_9325736_SNP [dm6]	A	G	1.012e^-4	0.878	INTRON CG8861
2L	16865188	2L_16865188_SNP [dm3] 2L_16865188_SNP [dm6]	G	T	1.012e^-4	0.878	INTERGENIC
2L	20889327	2L_20889327_SNP [dm3] 2L_20889327_SNP [dm6]	C	T	1.017e^-4	0.878	INTRON sky & 1 other
3L	18216829	3L_18216829_SNP [dm3] 3L_18223729_SNP [dm6]	G	A	1.021e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9767190	2R_9767190_SNP [dm3] 2R_13879685_SNP [dm6]	C	G	1.039e^-4	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9767196	2R_9767196_SNP [dm3] 2R_13879691_SNP [dm6]	A	G	1.039e^-4	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23546658	3R_23546658_SNP [dm3] 3R_27720936_SNP [dm6]	C	T	1.040e^-4	0.878	INTERGENIC
3L	17934562	3L_17934562_SNP [dm3] 3L_17941462_SNP [dm6]	C	T	1.048e^-4	0.878	INTRON CG43174
2L	21832934	2L_21832934_SNP [dm3] 2L_21832934_SNP [dm6]	T	C	1.063e^-4	0.878	INTRON tsh	TF binding site BDTNP1_TFBS_twi
3L	21328967	3L_21328967_SNP [dm3] 3L_21335867_SNP [dm6]	C	A	1.065e^-4	0.878	NON_SYNONYMOUS_CODING CG7338 DOWNSTREAM Rab26	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1336799	2L_1336799_SNP [dm3] 2L_1336799_SNP [dm6]	A	T	1.072e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1336800	2L_1336800_SNP [dm3] 2L_1336800_SNP [dm6]	A	C	1.072e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20907656	2L_20907656_SNP [dm3] 2L_20907656_SNP [dm6]	C	T	1.078e^-4	0.878	INTRON sky & 1 other
2R	7456087	2R_7456087_SNP [dm3] 2R_11568582_SNP [dm6]	T	C	1.081e^-4	0.878	INTERGENIC
3R	20973469	3R_20973469_SNP [dm3] 3R_25147747_SNP [dm6]	G	A	1.085e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	7290738	X_7290738_DEL [dm3] X_7396705_DEL [dm6]	ATGCAA	A	1.086e^-4	0.878	INTRON CG1677 & 1 other
2R	13178190	2R_13178190_SNP [dm3] 2R_17290685_SNP [dm6]	G	C	1.087e^-4	0.878	INTRON mbl
2L	18152836	2L_18152836_SNP [dm3] 2L_18152836_SNP [dm6]	A	T	1.095e^-4	0.878	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	18336263	3L_18336263_DEL [dm3] 3L_18343163_DEL [dm6]	GTCCCAG	G	1.099e^-4	0.878	INTERGENIC
X	8987108	X_8987108_SNP [dm3] X_9093075_SNP [dm6]	G	T	1.112e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC
3R	10266497	3R_10266497_DEL [dm3] 3R_14440775_DEL [dm6]	ACGATGTGGTATATTTCTAC...	A	1.120e^-4	0.878	INTRON cv-c
2R	2989928	2R_2989928_DEL [dm3] 2R_7102423_DEL [dm6]	ACG	A	1.129e^-4	0.878	INTRON esn
2L	8178046	2L_8178046_SNP [dm3] 2L_8178046_SNP [dm6]	A	C	1.134e^-4	0.878	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3845086	2L_3845086_SNP [dm3] 2L_3845086_SNP [dm6]	A	G	1.143e^-4	0.878	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16740489	2L_16740489_INS [dm3] 2L_16740489_INS [dm6]	G	GGGTCAATTGGGT...	1.149e^-4	0.878	INTRON ChLD3
2L	19379261	2L_19379261_SNP [dm3] 2L_19379261_SNP [dm6]	A	G	1.162e^-4	0.878	INTERGENIC
2R	5303121	2R_5303121_SNP [dm3] 2R_9415616_SNP [dm6]	G	C	1.174e^-4	0.878	INTRON wun2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
3L	17499791	3L_17499791_SNP [dm3] 3L_17506691_SNP [dm6]	G	T	1.183e^-4	0.878	INTRON Oatp74D
3L	10247025	3L_10247025_SNP [dm3] 3L_10253925_SNP [dm6]	A	C	1.187e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1375419	3L_1375419_SNP [dm3] 3L_1375419_SNP [dm6]	T	C	1.189e^-4	0.878	INTRON Ptp61F & 1 other
3R	24095761	3R_24095761_SNP [dm3] 3R_28270039_SNP [dm6]	T	C	1.190e^-4	0.878	INTERGENIC
2R	4176992	2R_4176992_SNP [dm3] 2R_8289487_SNP [dm6]	C	T	1.208e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	19565919	2L_19565919_SNP [dm3] 2L_19565919_SNP [dm6]	T	A	1.208e^-4	0.878	UTR_5_PRIME CG13077 UPSTREAM CG13077 DOWNSTREAM CG13078
3R	19719411	3R_19719411_SNP [dm3] 3R_23893689_SNP [dm6]	A	C	1.209e^-4	0.878	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
3R	19719416	3R_19719416_SNP [dm3] 3R_23893694_SNP [dm6]	A	G	1.209e^-4	0.878	UPSTREAM tbrd-1 DOWNSTREAM sba INTERGENIC
3R	16772518	3R_16772518_SNP [dm3] 3R_20946796_SNP [dm6]	C	T	1.217e^-4	0.878	INTERGENIC
2R	7813342	2R_7813342_SNP [dm3] 2R_11925837_SNP [dm6]	C	T	1.218e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3L	14940833	3L_14940833_SNP [dm3] 3L_14947733_SNP [dm6]	T	C	1.225e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	14943609	3L_14943609_SNP [dm3] 3L_14950509_SNP [dm6]	T	C	1.227e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14339671	3L_14339671_SNP [dm3] 3L_14346571_SNP [dm6]	G	T	1.229e^-4	0.878	INTRON fz
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	1.237e^-4	0.878	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19379268	2L_19379268_SNP [dm3] 2L_19379268_SNP [dm6]	G	A	1.237e^-4	0.878	INTERGENIC
3R	22685919	3R_22685919_SNP [dm3] 3R_26860197_SNP [dm6]	C	G	1.243e^-4	0.878	INTRON Lerp
2R	7783508	2R_7783508_SNP [dm3] 2R_11896003_SNP [dm6]	A	C	1.245e^-4	0.878	UTR_3_PRIME MCPH1 DOWNSTREAM Ef1alpha48D & 1 other
X	611809	X_611809_SNP [dm3] X_717776_SNP [dm6]	C	T	1.246e^-4	0.878	INTRON sdk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10041260	2L_10041260_SNP [dm3] 2L_10041260_SNP [dm6]	G	T	1.258e^-4	0.878	INTERGENIC
X	13127313	X_13127313_SNP [dm3] X_13233280_SNP [dm6]	G	A	1.262e^-4	0.878	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20816761	2L_20816761_SNP [dm3] 2L_20816761_SNP [dm6]	C	A	1.263e^-4	0.878	UPSTREAM CG33322 INTRON CheB38b
2R	7939269	2R_7939269_SNP [dm3] 2R_12051764_SNP [dm6]	A	C	1.267e^-4	0.878	UPSTREAM CG30039 INTERGENIC
2L	5909024	2L_5909024_SNP [dm3] 2L_5909024_SNP [dm6]	C	T	1.281e^-4	0.878	UTR_3_PRIME CG14000 INTRON bchs
3R	14033189	3R_14033189_SNP [dm3] 3R_18207467_SNP [dm6]	T	A	1.283e^-4	0.878	INTRON CG7985
2L	5890319	2L_5890319_SNP [dm3] 2L_5890319_SNP [dm6]	A	G	1.288e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24100342	3R_24100342_SNP [dm3] 3R_28274620_SNP [dm6]	C	T	1.290e^-4	0.878	INTERGENIC
3R	24100357	3R_24100357_SNP [dm3] 3R_28274635_SNP [dm6]	A	G	1.293e^-4	0.878	INTERGENIC
2R	14103512	2R_14103512_SNP [dm3] 2R_18216007_SNP [dm6]	T	G	1.295e^-4	0.878	INTERGENIC
X	17825366	X_17825366_SNP [dm3] X_17931333_SNP [dm6]	A	T	1.295e^-4	0.878	INTRON Sh
2R	11988751	2R_11988751_SNP [dm3] 2R_16101246_SNP [dm6]	T	C	1.306e^-4	0.878	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	12376721	3L_12376721_SNP [dm3] 3L_12383621_SNP [dm6]	A	T	1.312e^-4	0.878	INTRON Ncc69
3L	12376746	3L_12376746_SNP [dm3] 3L_12383646_SNP [dm6]	T	A	1.312e^-4	0.878	INTRON Ncc69
2L	10063942	2L_10063942_DEL [dm3] 2L_10063942_DEL [dm6]	TGAAT	T	1.314e^-4	0.878	DOWNSTREAM CG44153 & 1 other INTERGENIC
3R	24100337	3R_24100337_SNP [dm3] 3R_28274615_SNP [dm6]	G	C	1.315e^-4	0.878	INTERGENIC
2R	15316609	2R_15316609_SNP [dm3] 2R_19429104_SNP [dm6]	T	A	1.316e^-4	0.878	DOWNSTREAM CalpA INTRON CalpA
X	18047203	X_18047203_INS [dm3] X_18153170_INS [dm6]	T	TTACCCAACAGTT...	1.334e^-4	0.878	INTERGENIC
X	18047231	X_18047231_MNP [dm3] X_18153198_MNP [dm6]	GAT	TTG	1.334e^-4	0.878	INTERGENIC
3R	18988147	3R_18988147_SNP [dm3] 3R_23162425_SNP [dm6]	A	C	1.334e^-4	0.878	INTERGENIC
2R	7897958	2R_7897958_DEL [dm3] 2R_12010453_DEL [dm6]	TTCAATGCACAT...	A	1.335e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
3R	23127442	3R_23127442_SNP [dm3] 3R_27301720_SNP [dm6]	C	T	1.337e^-4	0.878	INTRON CG3339	TF binding site mE1_TFBS_cnc
2R	10701633	2R_10701633_SNP [dm3] 2R_14814128_SNP [dm6]	C	T	1.339e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_Trl
X	10061074	X_10061074_SNP [dm3] X_10167041_SNP [dm6]	A	C	1.344e^-4	0.878	INTRON CR44894 & 1 other
2R	18998636	2R_18998636_SNP [dm3] 2R_23111113_SNP [dm6]	A	T	1.354e^-4	0.878	EXON CR44781	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10874793	2R_10874793_SNP [dm3] 2R_14987288_SNP [dm6]	G	T	1.362e^-4	0.878	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13451692	2R_13451692_SNP [dm3] 2R_17564187_SNP [dm6]	G	A	1.378e^-4	0.878	UTR_3_PRIME CG43324 UPSTREAM CG14480 DOWNSTREAM Klp54D
2L	767580	2L_767580_SNP [dm3] 2L_767580_SNP [dm6]	A	G	1.380e^-4	0.878	INTERGENIC
3L	11574821	3L_11574821_SNP [dm3] 3L_11581721_SNP [dm6]	T	C	1.385e^-4	0.878	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	19475561	2R_19475561_SNP [dm3] 2R_23588038_SNP [dm6]	T	G	1.386e^-4	0.878	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	10926474	3L_10926474_SNP [dm3] 3L_10933374_SNP [dm6]	T	C	1.398e^-4	0.878	INTERGENIC
3R	23677683	3R_23677683_SNP [dm3] 3R_27851961_SNP [dm6]	A	T	1.407e^-4	0.878	INTRON CG34353
X	10764322	X_10764322_SNP [dm3] X_10870289_SNP [dm6]	T	G	1.420e^-4	0.878	SYNONYMOUS_CODING CG2157 DOWNSTREAM CG1637	TF binding site mE1_TFBS_chinmo
2L	13730345	2L_13730345_SNP [dm3] 2L_13730345_SNP [dm6]	C	A	1.420e^-4	0.878	INTERGENIC
3R	20401199	3R_20401199_INS [dm3] 3R_24575477_INS [dm6]	C	CTCC	1.423e^-4	0.878	INTRON CG13624
3R	20401201	3R_20401201_SNP [dm3] 3R_24575479_SNP [dm6]	A	T	1.423e^-4	0.878	INTRON CG13624
3R	20401203	3R_20401203_SNP [dm3] 3R_24575481_SNP [dm6]	G	T	1.423e^-4	0.878	INTRON CG13624
3R	24100345	3R_24100345_SNP [dm3] 3R_28274623_SNP [dm6]	T	C	1.427e^-4	0.878	INTERGENIC
X	15999783	X_15999783_SNP [dm3] X_16105750_SNP [dm6]	A	G	1.428e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	9556669	2L_9556669_SNP [dm3] 2L_9556669_SNP [dm6]	C	A	1.430e^-4	0.878	INTRON jp
2R	7939816	2R_7939816_SNP [dm3] 2R_12052311_SNP [dm6]	A	G	1.442e^-4	0.878	UPSTREAM CG30039 & 1 other INTERGENIC
3L	21335515	3L_21335515_SNP [dm3] 3L_21342415_SNP [dm6]	C	T	1.442e^-4	0.878	SYNONYMOUS_CODING CG7324
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	1.446e^-4	0.878	INTRON CG43729
3R	12332865	3R_12332865_SNP [dm3] 3R_16507143_SNP [dm6]	G	T	1.448e^-4	0.878	INTRON CG42342	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	10445644	3L_10445644_SNP [dm3] 3L_10452544_SNP [dm6]	A	T	1.455e^-4	0.878	INTERGENIC
2R	7898132	2R_7898132_SNP [dm3] 2R_12010627_SNP [dm6]	A	G	1.456e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
3R	11709724	3R_11709724_SNP [dm3] 3R_15884002_SNP [dm6]	C	T	1.456e^-4	0.878	INTERGENIC
2R	10062872	2R_10062872_SNP [dm3] 2R_14175367_SNP [dm6]	A	G	1.458e^-4	0.878	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10060983	2L_10060983_SNP [dm3] 2L_10060983_SNP [dm6]	A	G	1.468e^-4	0.878	START_GAINED Spn31A UTR_5_PRIME Spn31A DOWNSTREAM Pen
2R	15996755	2R_15996755_SNP [dm3] 2R_20109250_SNP [dm6]	T	C	1.469e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10829678	2R_10829678_SNP [dm3] 2R_14942173_SNP [dm6]	A	G	1.483e^-4	0.878	UPSTREAM CG10257 INTERGENIC
X	14347527	X_14347527_SNP [dm3] X_14453494_SNP [dm6]	A	G	1.490e^-4	0.878	INTRON dpr8
3R	26788334	3R_26788334_SNP [dm3] 3R_30962612_SNP [dm6]	C	T	1.491e^-4	0.878	DOWNSTREAM Ctr1C & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24100351	3R_24100351_SNP [dm3] 3R_28274629_SNP [dm6]	C	T	1.498e^-4	0.878	INTERGENIC
3L	12376020	3L_12376020_SNP [dm3] 3L_12382920_SNP [dm6]	A	G	1.507e^-4	0.878	INTRON Ncc69
2R	10137440	2R_10137440_SNP [dm3] 2R_14249935_SNP [dm6]	C	T	1.510e^-4	0.878	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	24100331	3R_24100331_INS [dm3] 3R_28274609_INS [dm6]	A	TGAT	1.531e^-4	0.878	INTERGENIC
3R	18978579	3R_18978579_SNP [dm3] 3R_23152857_SNP [dm6]	C	T	1.535e^-4	0.878	UTR_3_PRIME unk DOWNSTREAM unk
2R	4177115	2R_4177115_SNP [dm3] 2R_8289610_SNP [dm6]	T	C	1.536e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	12473033	3L_12473033_SNP [dm3] 3L_12479933_SNP [dm6]	T	C	1.541e^-4	0.878	INTRON CG10663
2L	18152833	2L_18152833_SNP [dm3] 2L_18152833_SNP [dm6]	G	A	1.542e^-4	0.878	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	10110465	2R_10110465_SNP [dm3] 2R_14222960_SNP [dm6]	C	T	1.544e^-4	0.878	INTRON CG8468	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8987580	X_8987580_SNP [dm3] X_9093547_SNP [dm6]	A	T	1.547e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24100336	3R_24100336_SNP [dm3] 3R_28274614_SNP [dm6]	C	A	1.556e^-4	0.878	INTERGENIC
2R	7898006	2R_7898006_SNP [dm3] 2R_12010501_SNP [dm6]	A	C	1.559e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
2R	10657231	2R_10657231_SNP [dm3] 2R_14769726_SNP [dm6]	G	A	1.565e^-4	0.878	UTR_3_PRIME CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
2L	18152799	2L_18152799_DEL [dm3] 2L_18152799_DEL [dm6]	TGAAAATATATTTT...	C	1.565e^-4	0.878	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	4341168	3L_4341168_SNP [dm3] 3L_4341168_SNP [dm6]	G	T	1.581e^-4	0.878	INTRON Cip4
2R	7942392	2R_7942392_SNP [dm3] 2R_12054887_SNP [dm6]	C	A	1.588e^-4	0.878	UPSTREAM Drep-3 DOWNSTREAM CG44314 INTRON CG44314
2L	16312245	2L_16312245_SNP [dm3] 2L_16312245_SNP [dm6]	C	T	1.589e^-4	0.878	SYNONYMOUS_CODING fzy DOWNSTREAM cact	TF binding site mE1_TFBS_sens
X	14999414	X_14999414_SNP [dm3] X_15105381_SNP [dm6]	A	G	1.590e^-4	0.878	INTRON Rab3-GEF	TF binding site BDTNP1_TFBS_dl
2L	5908708	2L_5908708_SNP [dm3] 2L_5908708_SNP [dm6]	T	G	1.603e^-4	0.878	NON_SYNONYMOUS_CODING bchs DOWNSTREAM CG14000	TF binding site mE1_TFBS_sens
2L	21833090	2L_21833090_SNP [dm3] 2L_21833090_SNP [dm6]	A	T	1.607e^-4	0.878	INTRON tsh
2R	7929380	2R_7929380_SNP [dm3] 2R_12041875_SNP [dm6]	G	A	1.608e^-4	0.878	SYNONYMOUS_CODING RpIII128
3R	14233814	3R_14233814_SNP [dm3] 3R_18408092_SNP [dm6]	C	T	1.609e^-4	0.878	SYNONYMOUS_CODING CG31122	TF binding site BDTNP1_TFBS_da
3R	16770678	3R_16770678_SNP [dm3] 3R_20944956_SNP [dm6]	A	G	1.609e^-4	0.878	INTRON CG31191
3R	12204969	3R_12204969_SNP [dm3] 3R_16379247_SNP [dm6]	C	A	1.609e^-4	0.878	INTRON ss
2R	11339848	2R_11339848_SNP [dm3] 2R_15452343_SNP [dm6]	C	A	1.610e^-4	0.878	INTRON CG43729
2R	11339849	2R_11339849_SNP [dm3] 2R_15452344_SNP [dm6]	G	C	1.610e^-4	0.878	INTRON CG43729
3R	7807090	3R_7807090_SNP [dm3] 3R_11981368_SNP [dm6]	A	T	1.616e^-4	0.878	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23138559	3R_23138559_SNP [dm3] 3R_27312837_SNP [dm6]	A	G	1.617e^-4	0.878	INTRON CG3339
X	14516424	X_14516424_SNP [dm3] X_14622391_SNP [dm6]	G	C	1.620e^-4	0.878	INTRON NetA
3L	18570630	3L_18570630_SNP [dm3] 3L_18577530_SNP [dm6]	G	T	1.621e^-4	0.878	INTERGENIC
2R	18721786	2R_18721786_SNP [dm3] 2R_22834263_SNP [dm6]	A	G	1.623e^-4	0.878	SYNONYMOUS_CODING CG30265 UPSTREAM CG12490
2R	7936270	2R_7936270_INS [dm3] 2R_12048765_INS [dm6]	C	CT	1.646e^-4	0.878	INTRON Drep-1
2L	20945374	2L_20945374_SNP [dm3] 2L_20945374_SNP [dm6]	C	T	1.652e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19401337	3R_19401337_SNP [dm3] 3R_23575615_SNP [dm6]	C	G	1.656e^-4	0.878	INTRON beat-IV
3R	17347131	3R_17347131_SNP [dm3] 3R_21521409_SNP [dm6]	C	G	1.659e^-4	0.878	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	17418934	2R_17418934_SNP [dm3] 2R_21531429_SNP [dm6]	C	T	1.665e^-4	0.878	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
2L	20878217	2L_20878217_SNP [dm3] 2L_20878217_SNP [dm6]	C	T	1.667e^-4	0.878	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	23678605	3R_23678605_SNP [dm3] 3R_27852883_SNP [dm6]	G	A	1.686e^-4	0.878	INTRON CG34353
2L	5260383	2L_5260383_SNP [dm3] 2L_5260383_SNP [dm6]	C	T	1.691e^-4	0.878	DOWNSTREAM CR44744 INTRON tkv
2L	7325779	2L_7325779_INS [dm3] 2L_7325779_INS [dm6]	C	CC	1.693e^-4	0.878	INTERGENIC
2L	7325781	2L_7325781_MNP [dm3] 2L_7325781_MNP [dm6]	AATTGG	TCCCCC	1.693e^-4	0.878	INTERGENIC
2R	7211619	2R_7211619_SNP [dm3] 2R_11324114_SNP [dm6]	C	A	1.693e^-4	0.878	UPSTREAM sha INTERGENIC
2R	10062573	2R_10062573_SNP [dm3] 2R_14175068_SNP [dm6]	G	A	1.701e^-4	0.878	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	10062775	2R_10062775_SNP [dm3] 2R_14175270_SNP [dm6]	C	A	1.701e^-4	0.878	INTRON cg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_zfh1
X	17825277	X_17825277_SNP [dm3] X_17931244_SNP [dm6]	G	A	1.704e^-4	0.878	INTRON Sh
2L	20959395	2L_20959395_SNP [dm3] 2L_20959395_SNP [dm6]	T	G	1.705e^-4	0.878	INTERGENIC
2L	20130301	2L_20130301_SNP [dm3] 2L_20130301_SNP [dm6]	A	G	1.707e^-4	0.878	INTERGENIC
2R	13451914	2R_13451914_SNP [dm3] 2R_17564409_SNP [dm6]	G	T	1.709e^-4	0.878	UTR_5_PRIME CG14480 UPSTREAM CG14480 DOWNSTREAM CG43324	TF binding site BDTNP1_TFBS_hb
2L	3839571	2L_3839571_SNP [dm3] 2L_3839571_SNP [dm6]	G	C	1.710e^-4	0.878	DOWNSTREAM slp2 INTERGENIC	regulatory region REDfly_CRMs
3L	12391436	3L_12391436_DEL [dm3] 3L_12398336_DEL [dm6]	TA	T	1.718e^-4	0.878	FRAME_SHIFT CG32104
3R	7807123	3R_7807123_SNP [dm3] 3R_11981401_SNP [dm6]	G	T	1.734e^-4	0.878	SYNONYMOUS_CODING CG12224	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1026336	2L_1026336_SNP [dm3] 2L_1026336_SNP [dm6]	G	C	1.735e^-4	0.878	NON_SYNONYMOUS_CODING CG4375 INTRON IA-2
2L	21838869	2L_21838869_SNP [dm3] 2L_21838869_SNP [dm6]	A	G	1.736e^-4	0.878	INTERGENIC
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	1.737e^-4	0.878	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2523624	3L_2523624_SNP [dm3] 3L_2523624_SNP [dm6]	G	T	1.742e^-4	0.878	INTRON Spn
3R	17614210	3R_17614210_SNP [dm3] 3R_21788488_SNP [dm6]	T	G	1.759e^-4	0.878	INTRON CASK
3L	3829869	3L_3829869_SNP [dm3] 3L_3829869_SNP [dm6]	T	C	1.765e^-4	0.878	SPLICE_SITE_REGION enc INTRON enc
2L	16314922	2L_16314922_SNP [dm3] 2L_16314922_SNP [dm6]	A	T	1.767e^-4	0.878	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11988665	2R_11988665_SNP [dm3] 2R_16101160_SNP [dm6]	A	G	1.768e^-4	0.878	NON_SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	1.770e^-4	0.878	INTERGENIC
2R	13644392	2R_13644392_SNP [dm3] 2R_17756887_SNP [dm6]	C	T	1.772e^-4	0.878	UPSTREAM HLH54F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20297846	2R_20297846_SNP [dm3] 2R_24410323_SNP [dm6]	C	G	1.778e^-4	0.878	INTRON SerT
3R	2870912	3R_2870912_SNP [dm3] 3R_7045190_SNP [dm6]	C	A	1.779e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15263903	2R_15263903_SNP [dm3] 2R_19376398_SNP [dm6]	A	G	1.779e^-4	0.878	UPSTREAM CG10062 INTRON CG10062
2R	7898137	2R_7898137_SNP [dm3] 2R_12010632_SNP [dm6]	T	G	1.781e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
X	3473475	X_3473475_SNP [dm3] X_3579442_SNP [dm6]	A	C	1.783e^-4	0.878	INTRON AstA-R1
2L	10125214	2L_10125214_SNP [dm3] 2L_10125214_SNP [dm6]	T	A	1.786e^-4	0.878	SYNONYMOUS_CODING CG34109 INTRON CG44153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10137395	2R_10137395_SNP [dm3] 2R_14249890_SNP [dm6]	T	C	1.795e^-4	0.878	SYNONYMOUS_CODING Mdr50	TF binding site mE1_TFBS_cad
3R	26787119	3R_26787119_SNP [dm3] 3R_30961397_SNP [dm6]	A	C	1.798e^-4	0.878	NON_SYNONYMOUS_CODING CG15548
3L	10861901	3L_10861901_SNP [dm3] 3L_10868801_SNP [dm6]	T	A	1.805e^-4	0.878	INTRON tna
3R	25409024	3R_25409024_SNP [dm3] 3R_29583302_SNP [dm6]	C	A	1.814e^-4	0.878	INTERGENIC
X	10061071	X_10061071_SNP [dm3] X_10167038_SNP [dm6]	T	C	1.815e^-4	0.878	INTRON CR44894 & 1 other
2R	949358	2R_949358_SNP [dm3] 2R_5061853_SNP [dm6]	C	G	1.819e^-4	0.878	INTERGENIC
3L	14940267	3L_14940267_SNP [dm3] 3L_14947167_SNP [dm6]	T	A	1.837e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	14574346	2L_14574346_SNP [dm3] 2L_14574346_SNP [dm6]	A	G	1.843e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	16864327	2L_16864327_SNP [dm3] 2L_16864327_SNP [dm6]	A	G	1.847e^-4	0.878	INTERGENIC
X	8987588	X_8987588_SNP [dm3] X_9093555_SNP [dm6]	T	C	1.853e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2467170	3L_2467170_SNP [dm3] 3L_2467170_SNP [dm6]	G	A	1.853e^-4	0.878	UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	10058810	2L_10058810_SNP [dm3] 2L_10058810_SNP [dm6]	G	T	1.856e^-4	0.878	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6077897	2L_6077897_SNP [dm3] 2L_6077897_SNP [dm6]	G	A	1.861e^-4	0.878	UPSTREAM CR9162 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	12993049	2R_12993049_SNP [dm3] 2R_17105544_SNP [dm6]	G	T	1.870e^-4	0.878	INTRON CG30456
3L	1254717	3L_1254717_SNP [dm3] 3L_1254717_SNP [dm6]	T	C	1.874e^-4	0.878	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	3490317	X_3490317_DEL [dm3] X_3596284_DEL [dm6]	TCGGTTTTTCT...	T	1.875e^-4	0.878	INTRON AstA-R1
3R	7740059	3R_7740059_SNP [dm3] 3R_11914337_SNP [dm6]	G	C	1.877e^-4	0.878	INTRON Cad87A
3R	19439186	3R_19439186_SNP [dm3] 3R_23613464_SNP [dm6]	T	A	1.881e^-4	0.878	INTRON CG31145
2L	16314907	2L_16314907_DEL [dm3] 2L_16314907_DEL [dm6]	AGA	A	1.897e^-4	0.878	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11940799	2L_11940799_SNP [dm3] 2L_11940799_SNP [dm6]	T	A	1.897e^-4	0.878	INTERGENIC
2L	7325777	2L_7325777_SNP [dm3] 2L_7325777_SNP [dm6]	A	G	1.899e^-4	0.878	INTERGENIC
3R	26788323	3R_26788323_SNP [dm3] 3R_30962601_SNP [dm6]	G	C	1.901e^-4	0.878	DOWNSTREAM Ctr1C & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8679212	2L_8679212_INS [dm3] 2L_8679212_INS [dm6]	T	TT	1.901e^-4	0.878	DOWNSTREAM tRNA:CR31889 INTRON CG9287
2R	15986352	2R_15986352_SNP [dm3] 2R_20098847_SNP [dm6]	G	A	1.902e^-4	0.878	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14515652	X_14515652_SNP [dm3] X_14621619_SNP [dm6]	A	G	1.903e^-4	0.878	INTRON NetA
2R	8843554	2R_8843554_SNP [dm3] 2R_12956049_SNP [dm6]	A	C	1.905e^-4	0.878	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15650440	3R_15650440_SNP [dm3] 3R_19824718_SNP [dm6]	C	G	1.910e^-4	0.878	INTRON bnl
2L	7439796	2L_7439796_SNP [dm3] 2L_7439796_SNP [dm6]	A	G	1.915e^-4	0.878	UPSTREAM CG5973 INTRON CG5973
3L	11574599	3L_11574599_SNP [dm3] 3L_11581499_SNP [dm6]	T	C	1.917e^-4	0.878	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG33269 & 1 other
2R	7226786	2R_7226786_SNP [dm3] 2R_11339281_SNP [dm6]	G	T	1.921e^-4	0.878	SYNONYMOUS_CODING zetaTry UPSTREAM kappaTry	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7807066	3R_7807066_SNP [dm3] 3R_11981344_SNP [dm6]	G	A	1.925e^-4	0.878	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21322786	3L_21322786_INS [dm3] 3L_21329686_INS [dm6]	A	ATTT	1.937e^-4	0.878	INTRON Rab26
3R	10595935	3R_10595935_SNP [dm3] 3R_14770213_SNP [dm6]	T	G	1.940e^-4	0.878	INTRON jvl
2L	21904788	2L_21904788_SNP [dm3] 2L_21904788_SNP [dm6]	T	G	1.955e^-4	0.878	INTERGENIC
3R	17929948	3R_17929948_SNP [dm3] 3R_22104226_SNP [dm6]	G	C	1.958e^-4	0.878	SYNONYMOUS_CODING CG13407 INTRON CG5778
X	6318151	X_6318151_SNP [dm3] X_6424118_SNP [dm6]	C	A	1.959e^-4	0.878	UTR_3_PRIME CG42340
2R	14763843	2R_14763843_SNP [dm3] 2R_18876338_SNP [dm6]	T	C	1.959e^-4	0.878	INTERGENIC
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	1.961e^-4	0.878	INTERGENIC
2R	7948189	2R_7948189_SNP [dm3] 2R_12060684_SNP [dm6]	T	G	1.963e^-4	0.878	INTRON Drep-3
3R	2327054	3R_2327054_SNP [dm3] 3R_6501332_SNP [dm6]	G	A	1.971e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9218773	3L_9218773_SNP [dm3] 3L_9225673_SNP [dm6]	A	T	1.974e^-4	0.878	INTERGENIC
3R	17345812	3R_17345812_SNP [dm3] 3R_21520090_SNP [dm6]	C	T	1.975e^-4	0.878	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	20875305	2L_20875305_SNP [dm3] 2L_20875305_SNP [dm6]	G	T	1.980e^-4	0.878	INTRON sky & 1 other EXON CR44981	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	26786687	3R_26786687_SNP [dm3] 3R_30960965_SNP [dm6]	A	G	1.988e^-4	0.878	NON_SYNONYMOUS_CODING CG15548
2L	16852135	2L_16852135_SNP [dm3] 2L_16852135_SNP [dm6]	C	T	1.992e^-4	0.878	INTRON CG31810	TF binding site BDTNP1_TFBS_dl
3R	15311682	3R_15311682_SNP [dm3] 3R_19485960_SNP [dm6]	C	G	1.994e^-4	0.878	NON_SYNONYMOUS_CODING Dys
3R	12318496	3R_12318496_SNP [dm3] 3R_16492774_SNP [dm6]	C	A	1.994e^-4	0.878	SYNONYMOUS_CODING Cad89D
3L	12375879	3L_12375879_SNP [dm3] 3L_12382779_SNP [dm6]	C	A	1.997e^-4	0.878	INTRON Ncc69
2R	15316570	2R_15316570_SNP [dm3] 2R_19429065_SNP [dm6]	A	G	2.002e^-4	0.878	DOWNSTREAM CalpA INTRON CalpA
2L	20851471	2L_20851471_SNP [dm3] 2L_20851471_SNP [dm6]	T	C	2.005e^-4	0.878	DOWNSTREAM CG14402 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6620819	3L_6620819_SNP [dm3] 3L_6627719_SNP [dm6]	A	G	2.006e^-4	0.878	INTRON GluRIA
3L	6611172	3L_6611172_SNP [dm3] 3L_6618072_SNP [dm6]	G	A	2.007e^-4	0.878	UTR_3_PRIME CG8398
2L	4457568	2L_4457568_SNP [dm3] 2L_4457568_SNP [dm6]	C	T	2.010e^-4	0.878	UPSTREAM Gs1l DOWNSTREAM snoRNA:Me18S-C1831 INTRON RpL27A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12809909	3L_12809909_SNP [dm3] 3L_12816809_SNP [dm6]	G	C	2.010e^-4	0.878	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_sens
3R	26788122	3R_26788122_DEL [dm3] 3R_30962400_DEL [dm6]	CAG	C	2.011e^-4	0.878	DOWNSTREAM Ctr1C & 1 other INTERGENIC
3R	15653815	3R_15653815_SNP [dm3] 3R_19828093_SNP [dm6]	C	G	2.011e^-4	0.878	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
3R	24095790	3R_24095790_SNP [dm3] 3R_28270068_SNP [dm6]	T	A	2.020e^-4	0.878	INTERGENIC
3R	7806687	3R_7806687_SNP [dm3] 3R_11980965_SNP [dm6]	A	G	2.025e^-4	0.878	UPSTREAM CG18547 INTRON CG12224	TF binding site mE1_TFBS_Trl
2L	10052556	2L_10052556_SNP [dm3] 2L_10052556_SNP [dm6]	A	T	2.031e^-4	0.878	DOWNSTREAM CR44874 INTERGENIC
3R	26590555	3R_26590555_SNP [dm3] 3R_30764833_SNP [dm6]	G	A	2.032e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18783469	3L_18783469_DEL [dm3] 3L_18790369_DEL [dm6]	AAT	A	2.039e^-4	0.878	INTRON ftz-f1	TF binding site BDTNP1_TFBS_dl
3L	17492138	3L_17492138_SNP [dm3] 3L_17499038_SNP [dm6]	C	A	2.042e^-4	0.878	INTRON Oatp74D
2R	13447728	2R_13447728_SNP [dm3] 2R_17560223_SNP [dm6]	T	C	2.043e^-4	0.878	INTRON Klp54D
X	12317719	X_12317719_SNP [dm3] X_12423686_SNP [dm6]	G	T	2.060e^-4	0.878	INTERGENIC
2L	20857691	2L_20857691_SNP [dm3] 2L_20857691_SNP [dm6]	C	T	2.061e^-4	0.878	SYNONYMOUS_CODING CG14400 DOWNSTREAM twit	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1921074	3L_1921074_SNP [dm3] 3L_1921074_SNP [dm6]	C	A	2.064e^-4	0.878	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21838679	2L_21838679_INS [dm3] 2L_21838679_INS [dm6]	T	TA	2.077e^-4	0.878	INTERGENIC
2L	12865256	2L_12865256_SNP [dm3] 2L_12865256_SNP [dm6]	A	C	2.083e^-4	0.878	INTERGENIC
X	13206407	X_13206407_SNP [dm3] X_13312374_SNP [dm6]	A	G	2.086e^-4	0.878	INTRON IP3K2
3R	18445359	3R_18445359_SNP [dm3] 3R_22619637_SNP [dm6]	T	A	2.090e^-4	0.878	NON_SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
2L	7995594	2L_7995594_SNP [dm3] 2L_7995594_SNP [dm6]	A	T	2.093e^-4	0.878	SYNONYMOUS_CODING CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	10193337	2R_10193337_SNP [dm3] 2R_14305832_SNP [dm6]	G	A	2.104e^-4	0.878	INTERGENIC
2R	7897977	2R_7897977_SNP [dm3] 2R_12010472_SNP [dm6]	G	C	2.107e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
3L	11182683	3L_11182683_INS [dm3] 3L_11189583_INS [dm6]	A	AAAGTTTATTTAAACTTCA...	2.110e^-4	0.878	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
3R	21016741	3R_21016741_SNP [dm3] 3R_25191019_SNP [dm6]	T	C	2.116e^-4	0.878	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9901343	3L_9901343_SNP [dm3] 3L_9908243_SNP [dm6]	G	A	2.116e^-4	0.878	INTRON CG34356
3L	12930640	3L_12930640_SNP [dm3] 3L_12937540_SNP [dm6]	G	A	2.134e^-4	0.878	INTERGENIC
2L	1284531	2L_1284531_SNP [dm3] 2L_1284531_SNP [dm6]	C	T	2.141e^-4	0.878	INTRON robo3
2R	17366933	2R_17366933_SNP [dm3] 2R_21479428_SNP [dm6]	T	A	2.149e^-4	0.878	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	15164315	3R_15164315_SNP [dm3] 3R_19338593_SNP [dm6]	G	C	2.150e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21015948	3R_21015948_SNP [dm3] 3R_25190226_SNP [dm6]	A	T	2.150e^-4	0.878	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26792926	3R_26792926_SNP [dm3] 3R_30967204_SNP [dm6]	G	C	2.153e^-4	0.878	INTERGENIC
2R	7444758	2R_7444758_SNP [dm3] 2R_11557253_SNP [dm6]	A	C	2.155e^-4	0.878	INTERGENIC
3R	13421074	3R_13421074_SNP [dm3] 3R_17595352_SNP [dm6]	A	G	2.172e^-4	0.878	UPSTREAM Sgs5 DOWNSTREAM CG7587 INTERGENIC
3R	18468957	3R_18468957_SNP [dm3] 3R_22643235_SNP [dm6]	T	C	2.179e^-4	0.878	INTRON CG45058
3L	11426096	3L_11426096_SNP [dm3] 3L_11432996_SNP [dm6]	A	G	2.182e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2048370	3R_2048370_SNP [dm3] 3R_6222648_SNP [dm6]	C	G	2.183e^-4	0.878	UPSTREAM Osi4 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7935363	2R_7935363_SNP [dm3] 2R_12047858_SNP [dm6]	T	A	2.185e^-4	0.878	INTRON Drep-1
3L	1256919	3L_1256919_SNP [dm3] 3L_1256919_SNP [dm6]	A	G	2.189e^-4	0.878	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
2L	12692575	2L_12692575_SNP [dm3] 2L_12692575_SNP [dm6]	A	T	2.208e^-4	0.878	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	10897079	2R_10897079_SNP [dm3] 2R_15009574_SNP [dm6]	A	G	2.209e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6132514	2L_6132514_SNP [dm3] 2L_6132514_SNP [dm6]	T	C	2.217e^-4	0.878	DOWNSTREAM CR45719 & 1 other INTERGENIC
3R	12949315	3R_12949315_SNP [dm3] 3R_17123593_SNP [dm6]	G	A	2.222e^-4	0.878	UPSTREAM cher & 1 other INTRON cher
3R	17931846	3R_17931846_SNP [dm3] 3R_22106124_SNP [dm6]	C	A	2.225e^-4	0.878	DOWNSTREAM CG13407 INTRON CG5778
2L	20901317	2L_20901317_SNP [dm3] 2L_20901317_SNP [dm6]	C	T	2.226e^-4	0.878	INTRON sky & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9767319	2R_9767319_SNP [dm3] 2R_13879814_SNP [dm6]	G	A	2.228e^-4	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	668751	2L_668751_SNP [dm3] 2L_668751_SNP [dm6]	T	A	2.231e^-4	0.878	INTRON ds	TF binding site BDTNP1_TFBS_twi
3R	17613463	3R_17613463_SNP [dm3] 3R_21787741_SNP [dm6]	A	G	2.231e^-4	0.878	INTRON CASK
2L	16078604	2L_16078604_SNP [dm3] 2L_16078604_SNP [dm6]	T	A	2.231e^-4	0.878	INTRON beat-Ia
3L	2467158	3L_2467158_SNP [dm3] 3L_2467158_SNP [dm6]	T	C	2.231e^-4	0.878	START_GAINED CG45186 UTR_5_PRIME CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3005688	3L_3005688_SNP [dm3] 3L_3005688_SNP [dm6]	T	A	2.232e^-4	0.878	INTRON FMRFaR
2L	1579475	2L_1579475_SNP [dm3] 2L_1579475_SNP [dm6]	C	T	2.232e^-4	0.878	INTRON haf	TF binding site mE1_TFBS_sens
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	2.241e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15316648	2R_15316648_SNP [dm3] 2R_19429143_SNP [dm6]	C	T	2.245e^-4	0.878	DOWNSTREAM CalpA INTRON CalpA
3R	20549720	3R_20549720_SNP [dm3] 3R_24723998_SNP [dm6]	C	A	2.246e^-4	0.878	DOWNSTREAM snoRNA:Me18S-C1280 INTRON tok
3R	18445402	3R_18445402_SNP [dm3] 3R_22619680_SNP [dm6]	A	C	2.247e^-4	0.878	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
2L	10477636	2L_10477636_SNP [dm3] 2L_10477636_SNP [dm6]	C	T	2.249e^-4	0.878	INTRON RluA-2	TF binding site mE1_TFBS_ttk
3R	1910449	3R_1910449_SNP [dm3] 3R_6084727_SNP [dm6]	T	A	2.253e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2R	17366693	2R_17366693_SNP [dm3] 2R_21479188_SNP [dm6]	T	C	2.259e^-4	0.878	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	19257630	X_19257630_SNP [dm3] X_19363597_SNP [dm6]	A	G	2.262e^-4	0.878	INTRON kek5	TF binding site BDTNP1_TFBS_twi
2R	17979845	2R_17979845_SNP [dm3] 2R_22092340_SNP [dm6]	A	T	2.268e^-4	0.878	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4891898	2L_4891898_SNP [dm3] 2L_4891898_SNP [dm6]	A	G	2.272e^-4	0.878	UPSTREAM CG3036 & 1 other DOWNSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	14132074	3R_14132074_SNP [dm3] 3R_18306352_SNP [dm6]	G	C	2.286e^-4	0.878	UTR_3_PRIME PKD INTRON PKD
2R	18722481	2R_18722481_SNP [dm3] 2R_22834958_SNP [dm6]	G	A	2.287e^-4	0.878	DOWNSTREAM CG30265 INTRON CG12490
2L	21054234	2L_21054234_SNP [dm3] 2L_21054234_SNP [dm6]	T	A	2.294e^-4	0.878	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_dl
3L	10247030	3L_10247030_SNP [dm3] 3L_10253930_SNP [dm6]	T	C	2.296e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7807075	3R_7807075_SNP [dm3] 3R_11981353_SNP [dm6]	T	C	2.305e^-4	0.878	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7974327	X_7974327_SNP [dm3] X_8080294_SNP [dm6]	T	C	2.311e^-4	0.878	INTRON CG2254	TF binding site BDTNP1_TFBS_dl
2R	17987290	2R_17987290_SNP [dm3] 2R_22099785_SNP [dm6]	A	G	2.332e^-4	0.878	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4685557	3L_4685557_SNP [dm3] 3L_4685557_SNP [dm6]	G	A	2.336e^-4	0.878	INTRON axo
2L	16065801	2L_16065801_SNP [dm3] 2L_16065801_SNP [dm6]	T	A	2.337e^-4	0.878	INTRON beat-Ia
2L	19379273	2L_19379273_SNP [dm3] 2L_19379273_SNP [dm6]	G	A	2.363e^-4	0.878	INTERGENIC
3R	25771085	3R_25771085_SNP [dm3] 3R_29945363_SNP [dm6]	T	C	2.364e^-4	0.878	SPLICE_SITE_REGION CG15523 INTRON CG15523
X	11105085	X_11105085_SNP [dm3] X_11211052_SNP [dm6]	A	T	2.371e^-4	0.878	INTERGENIC
3R	7812611	3R_7812611_SNP [dm3] 3R_11986889_SNP [dm6]	G	A	2.374e^-4	0.878	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	7812623	3R_7812623_SNP [dm3] 3R_11986901_SNP [dm6]	C	T	2.374e^-4	0.878	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	19516388	2R_19516388_SNP [dm3] 2R_23628865_SNP [dm6]	C	T	2.378e^-4	0.878	INTERGENIC
3R	8622391	3R_8622391_SNP [dm3] 3R_12796669_SNP [dm6]	A	G	2.378e^-4	0.878	INTERGENIC
3R	21973146	3R_21973146_SNP [dm3] 3R_26147424_SNP [dm6]	C	T	2.379e^-4	0.878	INTERGENIC
3L	1920772	3L_1920772_SNP [dm3] 3L_1920772_SNP [dm6]	A	T	2.387e^-4	0.878	UPSTREAM Dbx INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	15999745	X_15999745_SNP [dm3] X_16105712_SNP [dm6]	G	A	2.395e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	2.395e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8177525	2L_8177525_SNP [dm3] 2L_8177525_SNP [dm6]	C	T	2.395e^-4	0.878	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21325076	3L_21325076_SNP [dm3] 3L_21331976_SNP [dm6]	T	G	2.401e^-4	0.878	INTRON Rab26
2L	4156572	2L_4156572_SNP [dm3] 2L_4156572_SNP [dm6]	T	G	2.403e^-4	0.878	INTERGENIC
2L	968990	2L_968990_SNP [dm3] 2L_968990_SNP [dm6]	C	A	2.406e^-4	0.878	INTERGENIC
2R	9737959	2R_9737959_SNP [dm3] 2R_13850454_SNP [dm6]	C	G	2.406e^-4	0.878	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	15164351	3R_15164351_SNP [dm3] 3R_19338629_SNP [dm6]	A	T	2.406e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7937141	2R_7937141_SNP [dm3] 2R_12049636_SNP [dm6]	T	G	2.417e^-4	0.878	UTR_3_PRIME Drep-1
3L	19380497	3L_19380497_SNP [dm3] 3L_19387397_SNP [dm6]	C	T	2.428e^-4	0.878	UPSTREAM ms_3_76Ba INTRON CG32206
3L	12810773	3L_12810773_SNP [dm3] 3L_12817673_SNP [dm6]	G	A	2.432e^-4	0.878	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19197143	2L_19197143_SNP [dm3] 2L_19197143_SNP [dm6]	C	T	2.436e^-4	0.878	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10873821	2R_10873821_SNP [dm3] 2R_14986316_SNP [dm6]	C	A	2.450e^-4	0.878	INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	18454033	2R_18454033_SNP [dm3] 2R_22566528_SNP [dm6]	C	A	2.460e^-4	0.878	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23178616	3R_23178616_SNP [dm3] 3R_27352894_SNP [dm6]	C	T	2.470e^-4	0.878	INTRON CG42534
3R	7740064	3R_7740064_SNP [dm3] 3R_11914342_SNP [dm6]	C	A	2.487e^-4	0.878	INTRON Cad87A
2R	10112028	2R_10112028_SNP [dm3] 2R_14224523_SNP [dm6]	A	G	2.494e^-4	0.878	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10061045	X_10061045_SNP [dm3] X_10167012_SNP [dm6]	T	C	2.501e^-4	0.878	INTRON CR44894 & 1 other
3R	13421143	3R_13421143_SNP [dm3] 3R_17595421_SNP [dm6]	A	G	2.505e^-4	0.878	SYNONYMOUS_CODING Sgs5 DOWNSTREAM CG7587
3R	15653820	3R_15653820_SNP [dm3] 3R_19828098_SNP [dm6]	G	T	2.512e^-4	0.878	NON_SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_HSA
2L	19246806	2L_19246806_SNP [dm3] 2L_19246806_SNP [dm6]	C	T	2.516e^-4	0.878	INTERGENIC
3R	15164353	3R_15164353_SNP [dm3] 3R_19338631_SNP [dm6]	G	A	2.516e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18616301	3L_18616301_SNP [dm3] 3L_18623201_SNP [dm6]	A	G	2.540e^-4	0.878	SYNONYMOUS_CODING bora	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14907247	3R_14907247_SNP [dm3] 3R_19081525_SNP [dm6]	A	G	2.542e^-4	0.878	INTRON cdi
3L	2466543	3L_2466543_SNP [dm3] 3L_2466543_SNP [dm6]	A	C	2.547e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12721166	3L_12721166_DEL [dm3] 3L_12728066_DEL [dm6]	TTATTTTAAATAATTTAATT...	T	2.565e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21909340	3R_21909340_SNP [dm3] 3R_26083618_SNP [dm6]	A	T	2.568e^-4	0.878	INTRON dys
3L	21335557	3L_21335557_SNP [dm3] 3L_21342457_SNP [dm6]	A	T	2.571e^-4	0.878	SPLICE_SITE_REGION CG7324 INTRON CG7324
X	14515419	X_14515419_SNP [dm3] X_14621386_SNP [dm6]	A	C	2.573e^-4	0.878	INTRON NetA
2R	15734001	2R_15734001_SNP [dm3] 2R_19846496_SNP [dm6]	A	C	2.577e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12391480	3L_12391480_SNP [dm3] 3L_12398380_SNP [dm6]	C	T	2.578e^-4	0.878	NON_SYNONYMOUS_CODING CG32104
2L	15202532	2L_15202532_DEL [dm3] 2L_15202532_DEL [dm6]	ATA	A	2.580e^-4	0.878	UPSTREAM Sfp35C INTRON CR43357
2R	8843606	2R_8843606_SNP [dm3] 2R_12956101_SNP [dm6]	C	A	2.595e^-4	0.878	DOWNSTREAM CG13321 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	7907294	X_7907294_SNP [dm3] X_8013261_SNP [dm6]	G	A	2.595e^-4	0.878	INTRON Tbh
3L	7024691	3L_7024691_SNP [dm3] 3L_7031591_SNP [dm6]	C	T	2.595e^-4	0.878	INTRON Mp
3R	26490846	3R_26490846_SNP [dm3] 3R_30665124_SNP [dm6]	G	A	2.602e^-4	0.878	INTRON CR45191
3L	14456794	3L_14456794_SNP [dm3] 3L_14463694_SNP [dm6]	A	T	2.614e^-4	0.878	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6383653	2L_6383653_SNP [dm3] 2L_6383653_SNP [dm6]	G	A	2.615e^-4	0.878	SYNONYMOUS_CODING CG42370 DOWNSTREAM CG9507 INTRON CG42368
X	3012235	X_3012235_SNP [dm3] X_3118202_SNP [dm6]	A	T	2.618e^-4	0.878	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5195462	3R_5195462_SNP [dm3] 3R_9369740_SNP [dm6]	A	G	2.620e^-4	0.878	INTRON FER
3R	23501931	3R_23501931_SNP [dm3] 3R_27676209_SNP [dm6]	G	A	2.621e^-4	0.878	SYNONYMOUS_CODING unc80	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1665388	2L_1665388_SNP [dm3] 2L_1665388_SNP [dm6]	T	C	2.623e^-4	0.878	INTRON chinmo
2R	13040858	2R_13040858_SNP [dm3] 2R_17153353_SNP [dm6]	A	T	2.628e^-4	0.878	INTERGENIC
2L	5909139	2L_5909139_SNP [dm3] 2L_5909139_SNP [dm6]	G	T	2.636e^-4	0.878	NON_SYNONYMOUS_CODING CG14000 INTRON bchs
2L	20959151	2L_20959151_SNP [dm3] 2L_20959151_SNP [dm6]	A	G	2.636e^-4	0.878	INTERGENIC
2R	17727241	2R_17727241_SNP [dm3] 2R_21839736_SNP [dm6]	T	C	2.637e^-4	0.878	UPSTREAM CG4372 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1323098	2L_1323098_SNP [dm3] 2L_1323098_SNP [dm6]	C	T	2.642e^-4	0.878	INTERGENIC
2R	16113639	2R_16113639_SNP [dm3] 2R_20226134_SNP [dm6]	T	C	2.648e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16113640	2R_16113640_SNP [dm3] 2R_20226135_SNP [dm6]	A	G	2.648e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11471977	2L_11471977_SNP [dm3] 2L_11471977_SNP [dm6]	G	T	2.671e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	2.673e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	465384	X_465384_SNP [dm3] X_571351_SNP [dm6]	A	G	2.683e^-4	0.878	SPLICE_SITE_REGION Appl SYNONYMOUS_CODING Appl
2R	7939818	2R_7939818_SNP [dm3] 2R_12052313_SNP [dm6]	A	G	2.691e^-4	0.878	UPSTREAM CG30039 & 1 other INTERGENIC
3R	26786675	3R_26786675_DEL [dm3] 3R_30960953_DEL [dm6]	GCGG	G	2.691e^-4	0.878
3L	2466517	3L_2466517_SNP [dm3] 3L_2466517_SNP [dm6]	A	T	2.709e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	2659846	2L_2659846_SNP [dm3] 2L_2659846_SNP [dm6]	A	G	2.717e^-4	0.878	INTERGENIC
3L	1862485	3L_1862485_SNP [dm3] 3L_1862485_SNP [dm6]	A	T	2.721e^-4	0.878	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	26786591	3R_26786591_SNP [dm3] 3R_30960869_SNP [dm6]	T	C	2.736e^-4	0.878	NON_SYNONYMOUS_CODING CG15548
2R	7270972	2R_7270972_SNP [dm3] 2R_11383467_SNP [dm6]	C	A	2.736e^-4	0.878	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	14672120	2L_14672120_SNP [dm3] 2L_14672120_SNP [dm6]	A	G	2.736e^-4	0.878	INTRON osp
3R	23139075	3R_23139075_SNP [dm3] 3R_27313353_SNP [dm6]	C	A	2.742e^-4	0.878	SYNONYMOUS_CODING CG3339
3R	14902380	3R_14902380_SNP [dm3] 3R_19076658_SNP [dm6]	T	C	2.743e^-4	0.878	INTRON cdi
2R	18810504	2R_18810504_SNP [dm3] 2R_22922981_SNP [dm6]	G	T	2.744e^-4	0.878	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_sens
X	5175809	X_5175809_SNP [dm3] X_5281776_SNP [dm6]	G	A	2.745e^-4	0.878	INTERGENIC
2L	20970154	2L_20970154_SNP [dm3] 2L_20970154_SNP [dm6]	A	G	2.752e^-4	0.878	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4685748	3L_4685748_SNP [dm3] 3L_4685748_SNP [dm6]	G	T	2.766e^-4	0.878	INTRON axo
2R	7898020	2R_7898020_SNP [dm3] 2R_12010515_SNP [dm6]	G	A	2.768e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
2L	8687210	2L_8687210_SNP [dm3] 2L_8687210_SNP [dm6]	C	A	2.776e^-4	0.878	DOWNSTREAM Hnf4 & 1 other INTERGENIC
2R	2395411	2R_2395411_SNP [dm3] 2R_6507906_SNP [dm6]	T	C	2.777e^-4	0.878	DOWNSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12067720	3L_12067720_SNP [dm3] 3L_12074620_SNP [dm6]	G	A	2.780e^-4	0.878	INTRON Sema-5c
3R	14831122	3R_14831122_SNP [dm3] 3R_19005400_SNP [dm6]	A	T	2.786e^-4	0.878	INTRON gukh	TF binding site mE1_TFBS_chinmo
2L	21803039	2L_21803039_SNP [dm3] 2L_21803039_SNP [dm6]	T	A	2.792e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7954471	2R_7954471_SNP [dm3] 2R_12066966_SNP [dm6]	G	A	2.796e^-4	0.878	INTRON CG8888	TF binding site mE1_TFBS_bab1
2R	16113650	2R_16113650_MNP [dm3] 2R_20226145_MNP [dm6]	CTATAA	GGCGTC	2.800e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24822149	3R_24822149_SNP [dm3] 3R_28996427_SNP [dm6]	A	T	2.805e^-4	0.878	INTRON wat	TF binding site BDTNP1_TFBS_twi
3L	12810770	3L_12810770_SNP [dm3] 3L_12817670_SNP [dm6]	A	G	2.811e^-4	0.878	SYNONYMOUS_CODING CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	2775208	2R_2775208_SNP [dm3] 2R_6887703_SNP [dm6]	C	A	2.814e^-4	0.878	INTRON Spn42De
2R	7805247	2R_7805247_SNP [dm3] 2R_11917742_SNP [dm6]	G	A	2.821e^-4	0.878	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	23234652	3R_23234652_SNP [dm3] 3R_27408930_SNP [dm6]	T	G	2.827e^-4	0.878	INTRON side
3L	16075213	3L_16075213_SNP [dm3] 3L_16082113_SNP [dm6]	G	A	2.828e^-4	0.878	UPSTREAM CG33258 DOWNSTREAM Mbs INTERGENIC
2L	10052549	2L_10052549_DEL [dm3] 2L_10052549_DEL [dm6]	AAA	A	2.828e^-4	0.878	DOWNSTREAM CR44874 INTERGENIC
3R	24581195	3R_24581195_SNP [dm3] 3R_28755473_SNP [dm6]	C	T	2.837e^-4	0.878	DOWNSTREAM CG9997 INTERGENIC
2L	2795914	2L_2795914_SNP [dm3] 2L_2795914_SNP [dm6]	A	C	2.838e^-4	0.878	UPSTREAM Syt1 INTRON Syt1
3R	7836299	3R_7836299_SNP [dm3] 3R_12010577_SNP [dm6]	A	C	2.841e^-4	0.878	UPSTREAM GCC185 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18445423	3R_18445423_SNP [dm3] 3R_22619701_SNP [dm6]	C	A	2.847e^-4	0.878	SYNONYMOUS_CODING mRpL45 DOWNSTREAM loco
2R	14365668	2R_14365668_DEL [dm3] 2R_18478163_DEL [dm6]	AAA	A	2.864e^-4	0.878	INTRON CG30116	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15678182	3R_15678182_SNP [dm3] 3R_19852460_SNP [dm6]	G	A	2.866e^-4	0.878	INTRON CG4662	TF binding site mE1_TFBS_cad
3R	10961237	3R_10961237_SNP [dm3] 3R_15135515_SNP [dm6]	C	A	2.875e^-4	0.878	SYNONYMOUS_CODING CG6912	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18582152	3R_18582152_SNP [dm3] 3R_22756430_SNP [dm6]	C	T	2.881e^-4	0.878	INTRON Usp12-46 & 1 other
3R	26368956	3R_26368956_SNP [dm3] 3R_30543234_SNP [dm6]	C	T	2.888e^-4	0.878	INTRON tmod	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15994951	3R_15994951_SNP [dm3] 3R_20169229_SNP [dm6]	T	G	2.888e^-4	0.878	UPSTREAM CG5023 INTERGENIC
3R	23943993	3R_23943993_SNP [dm3] 3R_28118271_SNP [dm6]	T	A	2.892e^-4	0.878	INTERGENIC
3L	16448337	3L_16448337_SNP [dm3] 3L_16455237_SNP [dm6]	G	A	2.896e^-4	0.878	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16448347	3L_16448347_SNP [dm3] 3L_16455247_SNP [dm6]	T	C	2.896e^-4	0.878	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11336222	X_11336222_SNP [dm3] X_11442189_SNP [dm6]	G	A	2.898e^-4	0.878	UPSTREAM Sk1 INTRON Evi5	TF binding site BDTNP1_TFBS_dl
X	8925324	X_8925324_DEL [dm3] X_9031291_DEL [dm6]	AT	A	2.905e^-4	0.878	INTRON CR43836 & 1 other
X	6368890	X_6368890_SNP [dm3] X_6474857_SNP [dm6]	C	T	2.906e^-4	0.878	INTRON CG42340
3L	16006442	3L_16006442_INS [dm3] 3L_16013342_INS [dm6]	C	TT	2.907e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	10864066	2R_10864066_SNP [dm3] 2R_14976561_SNP [dm6]	T	A	2.911e^-4	0.878	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4156555	2L_4156555_SNP [dm3] 2L_4156555_SNP [dm6]	G	T	2.913e^-4	0.878	INTERGENIC
X	13407394	X_13407394_SNP [dm3] X_13513361_SNP [dm6]	C	T	2.923e^-4	0.878	INTRON Neto
2R	10701652	2R_10701652_DEL [dm3] 2R_14814147_DEL [dm6]	AACA	A	2.926e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13002896	2L_13002896_SNP [dm3] 2L_13002896_SNP [dm6]	G	C	2.930e^-4	0.878	SYNONYMOUS_CODING Vha68-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10445642	3L_10445642_SNP [dm3] 3L_10452542_SNP [dm6]	A	T	2.948e^-4	0.878	INTERGENIC
3R	7811871	3R_7811871_SNP [dm3] 3R_11986149_SNP [dm6]	T	C	2.964e^-4	0.878	SYNONYMOUS_CODING mfas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6460812	2R_6460812_SNP [dm3] 2R_10573307_SNP [dm6]	C	T	2.965e^-4	0.878	INTRON psq
3L	14894326	3L_14894326_SNP [dm3] 3L_14901226_SNP [dm6]	G	A	2.987e^-4	0.878	INTERGENIC
3L	2466679	3L_2466679_SNP [dm3] 3L_2466679_SNP [dm6]	A	C	2.992e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	7807029	3R_7807029_SNP [dm3] 3R_11981307_SNP [dm6]	C	A	3.003e^-4	0.878	NON_SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10655180	X_10655180_SNP [dm3] X_10761147_SNP [dm6]	C	T	3.004e^-4	0.878	INTRON Tango5
3L	9036002	3L_9036002_SNP [dm3] 3L_9042902_SNP [dm6]	A	G	3.005e^-4	0.878	INTRON Doc1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11450634	3L_11450634_SNP [dm3] 3L_11457534_SNP [dm6]	G	A	3.006e^-4	0.878	SYNONYMOUS_CODING CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	13212160	3L_13212160_SNP [dm3] 3L_13219060_SNP [dm6]	C	G	3.009e^-4	0.878	UPSTREAM CR45098 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	15379546	2L_15379546_SNP [dm3] 2L_15379546_SNP [dm6]	A	G	3.013e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10098524	2R_10098524_SNP [dm3] 2R_14211019_SNP [dm6]	C	T	3.014e^-4	0.878	INTRON Sox15	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8987082	X_8987082_SNP [dm3] X_9093049_SNP [dm6]	A	G	3.018e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC
3L	3924936	3L_3924936_SNP [dm3] 3L_3924936_SNP [dm6]	A	G	3.024e^-4	0.878	INTRON Eip63F-1
3L	18554335	3L_18554335_SNP [dm3] 3L_18561235_SNP [dm6]	G	T	3.032e^-4	0.878	INTRON AstC-R1
X	2636005	X_2636005_SNP [dm3] X_2741972_SNP [dm6]	T	A	3.034e^-4	0.878	NON_SYNONYMOUS_CODING Syx4 INTRON kirre	TF binding site BDTNP1_TFBS_twi
2R	9642352	2R_9642352_SNP [dm3] 2R_13754847_SNP [dm6]	G	A	3.036e^-4	0.878	INTRON CG6280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22004658	2L_22004658_SNP [dm3] 2L_22004658_SNP [dm6]	G	A	3.043e^-4	0.878	INTERGENIC	transposable element FlyBase
2R	16438687	2R_16438687_SNP [dm3] 2R_20551182_SNP [dm6]	G	A	3.048e^-4	0.878	SYNONYMOUS_CODING CG13430 UTR_3_PRIME CG18065	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	7898008	2R_7898008_SNP [dm3] 2R_12010503_SNP [dm6]	C	A	3.050e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
2R	11351565	2R_11351565_SNP [dm3] 2R_15464060_SNP [dm6]	T	G	3.054e^-4	0.878	DOWNSTREAM CG43729 INTRON CG43729
3L	2466481	3L_2466481_SNP [dm3] 3L_2466481_SNP [dm6]	G	A	3.061e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19839585	2L_19839585_SNP [dm3] 2L_19839585_SNP [dm6]	T	A	3.066e^-4	0.878	INTRON sick	TF binding site mE1_TFBS_HSA
2L	1426777	2L_1426777_DEL [dm3] 2L_1426777_DEL [dm6]	TT	T	3.068e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr
X	8987586	X_8987586_INS [dm3] X_9093553_INS [dm6]	C	CC	3.076e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15650832	3R_15650832_SNP [dm3] 3R_19825110_SNP [dm6]	T	C	3.077e^-4	0.878	INTRON bnl
2L	12866368	2L_12866368_SNP [dm3] 2L_12866368_SNP [dm6]	G	T	3.078e^-4	0.878	INTERGENIC
2L	6283395	2L_6283395_SNP [dm3] 2L_6283395_SNP [dm6]	G	T	3.078e^-4	0.878	INTRON Ddr
2L	15418032	2L_15418032_SNP [dm3] 2L_15418032_SNP [dm6]	C	T	3.080e^-4	0.878	INTRON CG44869
2L	12153315	2L_12153315_SNP [dm3] 2L_12153315_SNP [dm6]	C	A	3.089e^-4	0.878	INTRON CG31760
2R	7270875	2R_7270875_SNP [dm3] 2R_11383370_SNP [dm6]	C	A	3.089e^-4	0.878	INTRON Sod3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	5050624	2L_5050624_SNP [dm3] 2L_5050624_SNP [dm6]	G	T	3.094e^-4	0.878	UPSTREAM CG9121 DOWNSTREAM eIF-3p40 INTRON CG9121
3R	16288951	3R_16288951_SNP [dm3] 3R_20463229_SNP [dm6]	T	C	3.101e^-4	0.878	INTRON Gfrl
2L	5961089	2L_5961089_SNP [dm3] 2L_5961089_SNP [dm6]	A	G	3.103e^-4	0.878	UPSTREAM Vm26Aa INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	977999	3L_977999_SNP [dm3] 3L_977999_SNP [dm6]	G	A	3.103e^-4	0.878	INTRON Glut1
3L	978003	3L_978003_DEL [dm3] 3L_978003_DEL [dm6]	AAAGAACATCTCGATTGGAA...	A	3.103e^-4	0.878	INTRON Glut1
3L	21341302	3L_21341302_SNP [dm3] 3L_21348202_SNP [dm6]	G	C	3.104e^-4	0.878	INTRON CG32436 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	12866230	2L_12866230_SNP [dm3] 2L_12866230_SNP [dm6]	C	T	3.105e^-4	0.878	INTERGENIC
2R	12747188	2R_12747188_SNP [dm3] 2R_16859683_SNP [dm6]	T	G	3.106e^-4	0.878	SYNONYMOUS_CODING Dek DOWNSTREAM Dek
3R	17347109	3R_17347109_SNP [dm3] 3R_21521387_SNP [dm6]	A	G	3.109e^-4	0.878	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16288968	3R_16288968_SNP [dm3] 3R_20463246_SNP [dm6]	C	T	3.123e^-4	0.878	INTRON Gfrl
2R	13713628	2R_13713628_SNP [dm3] 2R_17826123_SNP [dm6]	C	A	3.124e^-4	0.878	INTRON grh	transposable element FlyBase
X	9235897	X_9235897_SNP [dm3] X_9341864_SNP [dm6]	G	T	3.140e^-4	0.878	INTRON CG34449
2R	15270514	2R_15270514_SNP [dm3] 2R_19383009_SNP [dm6]	T	A	3.143e^-4	0.878	INTRON CG10073
2L	20130393	2L_20130393_SNP [dm3] 2L_20130393_SNP [dm6]	T	C	3.162e^-4	0.878	INTERGENIC
2L	21827069	2L_21827069_SNP [dm3] 2L_21827069_SNP [dm6]	A	T	3.163e^-4	0.878	INTERGENIC	transposable element FlyBase
2R	2775207	2R_2775207_SNP [dm3] 2R_6887702_SNP [dm6]	A	G	3.163e^-4	0.878	INTRON Spn42De
2L	21827068	2L_21827068_SNP [dm3] 2L_21827068_SNP [dm6]	C	G	3.164e^-4	0.878	INTERGENIC	transposable element FlyBase
3R	23127456	3R_23127456_SNP [dm3] 3R_27301734_SNP [dm6]	T	C	3.169e^-4	0.878	INTRON CG3339	TF binding site mE1_TFBS_cnc
2R	1969063	2R_1969063_SNP [dm3] 2R_6081558_SNP [dm6]	T	C	3.175e^-4	0.878	UPSTREAM CG14590 INTRON Ars2
2R	11540844	2R_11540844_SNP [dm3] 2R_15653339_SNP [dm6]	A	G	3.176e^-4	0.878	INTRON CG42524
2L	12858565	2L_12858565_SNP [dm3] 2L_12858565_SNP [dm6]	A	T	3.176e^-4	0.878	INTERGENIC
X	18816284	X_18816284_SNP [dm3] X_18922251_SNP [dm6]	A	G	3.180e^-4	0.878	INTERGENIC
2L	3758927	2L_3758927_SNP [dm3] 2L_3758927_SNP [dm6]	C	A	3.180e^-4	0.878	SPLICE_SITE_REGION CG43707 INTRON CG43707
2L	1407199	2L_1407199_SNP [dm3] 2L_1407199_SNP [dm6]	G	T	3.206e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23125102	3R_23125102_SNP [dm3] 3R_27299380_SNP [dm6]	A	T	3.206e^-4	0.878	INTRON CG3339
3R	17343119	3R_17343119_SNP [dm3] 3R_21517397_SNP [dm6]	A	G	3.210e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15270616	2R_15270616_SNP [dm3] 2R_19383111_SNP [dm6]	G	A	3.216e^-4	0.878	SYNONYMOUS_CODING CG10073
3L	2356871	3L_2356871_SNP [dm3] 3L_2356871_SNP [dm6]	C	A	3.218e^-4	0.878	INTERGENIC
2L	1391452	2L_1391452_SNP [dm3] 2L_1391452_SNP [dm6]	T	C	3.220e^-4	0.878	SYNONYMOUS_CODING lea	TF binding site mE1_TFBS_sens
2L	16864202	2L_16864202_SNP [dm3] 2L_16864202_SNP [dm6]	A	G	3.221e^-4	0.878	INTERGENIC
3R	17614027	3R_17614027_SNP [dm3] 3R_21788305_SNP [dm6]	C	T	3.221e^-4	0.878	INTRON CASK
2R	17987300	2R_17987300_SNP [dm3] 2R_22099795_SNP [dm6]	T	A	3.222e^-4	0.878	UPSTREAM CG11073 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7780114	2R_7780114_SNP [dm3] 2R_11892609_SNP [dm6]	C	A	3.227e^-4	0.878	UPSTREAM snoRNA:Me28S-A1322 & 1 other INTRON Ef1alpha48D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7227380	2L_7227380_SNP [dm3] 2L_7227380_SNP [dm6]	T	C	3.234e^-4	0.878	UPSTREAM CG43799 INTRON Ndae1	TF binding site mE1_TFBS_inv
3L	12721115	3L_12721115_SNP [dm3] 3L_12728015_SNP [dm6]	T	A	3.236e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11199273	2L_11199273_SNP [dm3] 2L_11199273_SNP [dm6]	C	G	3.242e^-4	0.878	INTRON Ca-beta
3R	14132162	3R_14132162_SNP [dm3] 3R_18306440_SNP [dm6]	G	A	3.253e^-4	0.878	UTR_3_PRIME PKD INTRON PKD
X	15999885	X_15999885_SNP [dm3] X_16105852_SNP [dm6]	G	A	3.263e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	2795754	2L_2795754_SNP [dm3] 2L_2795754_SNP [dm6]	A	G	3.275e^-4	0.878	UPSTREAM Syt1 INTRON Syt1
2R	13722774	2R_13722774_SNP [dm3] 2R_17835269_SNP [dm6]	A	G	3.275e^-4	0.878	INTRON grh
3R	22733234	3R_22733234_SNP [dm3] 3R_26907512_SNP [dm6]	G	A	3.276e^-4	0.878	INTRON T48
3R	25581608	3R_25581608_SNP [dm3] 3R_29755886_SNP [dm6]	C	A	3.276e^-4	0.878	EXON CR44953
2L	4156543	2L_4156543_SNP [dm3] 2L_4156543_SNP [dm6]	G	T	3.286e^-4	0.878	INTERGENIC
3R	17343913	3R_17343913_SNP [dm3] 3R_21518191_SNP [dm6]	G	A	3.288e^-4	0.878	INTERGENIC
X	15999815	X_15999815_SNP [dm3] X_16105782_SNP [dm6]	G	C	3.289e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	11588044	2L_11588044_SNP [dm3] 2L_11588044_SNP [dm6]	T	G	3.290e^-4	0.878	UPSTREAM CR44496 INTRON kek2
X	5055713	X_5055713_SNP [dm3] X_5161680_SNP [dm6]	A	G	3.292e^-4	0.878	INTRON rg & 1 other
3L	12391839	3L_12391839_SNP [dm3] 3L_12398739_SNP [dm6]	C	T	3.301e^-4	0.878	DOWNSTREAM Smyd4 INTRON CG32104	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16006568	3L_16006568_SNP [dm3] 3L_16013468_SNP [dm6]	C	A	3.310e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad
2L	15202504	2L_15202504_SNP [dm3] 2L_15202504_SNP [dm6]	T	C	3.314e^-4	0.878	UPSTREAM Sfp35C INTRON CR43357
X	15999765	X_15999765_INS [dm3] X_16105732_INS [dm6]	C	CC	3.322e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	6505688	3L_6505688_SNP [dm3] 3L_6512588_SNP [dm6]	A	G	3.329e^-4	0.878	INTRON sfl
3R	26625717	3R_26625717_SNP [dm3] 3R_30799995_SNP [dm6]	C	T	3.329e^-4	0.878	INTRON wts
3L	9865675	3L_9865675_SNP [dm3] 3L_9872575_SNP [dm6]	A	G	3.338e^-4	0.878	INTERGENIC
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	3.347e^-4	0.878	NON_SYNONYMOUS_CODING sti
3L	17690705	3L_17690705_SNP [dm3] 3L_17697605_SNP [dm6]	A	G	3.364e^-4	0.878	INTRON Ccn
3L	18216885	3L_18216885_SNP [dm3] 3L_18223785_SNP [dm6]	T	G	3.365e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_inv
2R	7783373	2R_7783373_SNP [dm3] 2R_11895868_SNP [dm6]	G	A	3.367e^-4	0.878	DOWNSTREAM MCPH1 & 1 other INTERGENIC
2L	1622515	2L_1622515_SNP [dm3] 2L_1622515_SNP [dm6]	G	A	3.379e^-4	0.878	EXON CR44603
2L	1364111	2L_1364111_SNP [dm3] 2L_1364111_SNP [dm6]	A	C	3.387e^-4	0.878	INTERGENIC
X	18047236	X_18047236_DEL [dm3] X_18153203_DEL [dm6]	AAGA	A	3.394e^-4	0.878	INTERGENIC
3R	7832484	3R_7832484_SNP [dm3] 3R_12006762_SNP [dm6]	A	T	3.396e^-4	0.878	DOWNSTREAM KLHL18 INTERGENIC
2R	18766932	2R_18766932_SNP [dm3] 2R_22879409_SNP [dm6]	A	T	3.400e^-4	0.878	INTRON PIP5K59B	TF binding site mE1_TFBS_chinmo
2L	17750644	2L_17750644_SNP [dm3] 2L_17750644_SNP [dm6]	A	G	3.400e^-4	0.878	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	12859900	2L_12859900_SNP [dm3] 2L_12859900_SNP [dm6]	G	A	3.406e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	12107915	3L_12107915_SNP [dm3] 3L_12114815_SNP [dm6]	A	G	3.415e^-4	0.878	INTERGENIC
2R	2989899	2R_2989899_INS [dm3] 2R_7102394_INS [dm6]	G	GGGTG	3.416e^-4	0.878	INTRON esn
3L	6184034	3L_6184034_SNP [dm3] 3L_6190934_SNP [dm6]	G	A	3.422e^-4	0.878	NON_SYNONYMOUS_CODING CG7386	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21335734	3L_21335734_SNP [dm3] 3L_21342634_SNP [dm6]	C	G	3.424e^-4	0.878	INTRON CG7324
3L	1282219	3L_1282219_SNP [dm3] 3L_1282219_SNP [dm6]	C	T	3.429e^-4	0.878	INTRON CG32333
2L	936684	2L_936684_SNP [dm3] 2L_936684_SNP [dm6]	G	A	3.433e^-4	0.878	INTRON CG4341
3L	13212134	3L_13212134_SNP [dm3] 3L_13219034_SNP [dm6]	C	G	3.434e^-4	0.878	UPSTREAM CR45098 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15494649	X_15494649_SNP [dm3] X_15600616_SNP [dm6]	C	T	3.448e^-4	0.878	INTERGENIC
3R	26786808	3R_26786808_SNP [dm3] 3R_30961086_SNP [dm6]	G	T	3.450e^-4	0.878	NON_SYNONYMOUS_CODING CG15548
X	10984295	X_10984295_SNP [dm3] X_11090262_SNP [dm6]	C	A	3.465e^-4	0.878	UTR_5_PRIME CG2076 UPSTREAM CG2076 DOWNSTREAM Vago EXON CR45604	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	12206837	X_12206837_SNP [dm3] X_12312804_SNP [dm6]	A	G	3.470e^-4	0.878	SYNONYMOUS_CODING Ten-a
3L	1646740	3L_1646740_SNP [dm3] 3L_1646740_SNP [dm6]	T	G	3.475e^-4	0.878	NON_SYNONYMOUS_CODING CG17249 DOWNSTREAM CG13919	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19376399	3L_19376399_SNP [dm3] 3L_19383299_SNP [dm6]	G	C	3.476e^-4	0.878	INTRON CG32206
2R	4431399	2R_4431399_SNP [dm3] 2R_8543894_SNP [dm6]	T	G	3.476e^-4	0.878	UPSTREAM CR44279 INTERGENIC
3L	18597559	3L_18597559_SNP [dm3] 3L_18604459_SNP [dm6]	A	G	3.479e^-4	0.878	SPLICE_SITE_REGION CG18234 INTRON CG4174 & 2 others
3R	26755939	3R_26755939_SNP [dm3] 3R_30930217_SNP [dm6]	A	T	3.486e^-4	0.878	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1	TF binding site mE1_TFBS_cad
3R	14444033	3R_14444033_SNP [dm3] 3R_18618311_SNP [dm6]	A	G	3.501e^-4	0.878	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1290527	2L_1290527_SNP [dm3] 2L_1290527_SNP [dm6]	T	C	3.508e^-4	0.878	INTRON robo3
3R	14444109	3R_14444109_SNP [dm3] 3R_18618387_SNP [dm6]	C	T	3.525e^-4	0.878	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8317997	X_8317997_SNP [dm3] X_8423964_SNP [dm6]	G	A	3.527e^-4	0.878	NON_SYNONYMOUS_CODING Trf2 UTR_5_PRIME Trf2
X	9792474	X_9792474_SNP [dm3] X_9898441_SNP [dm6]	G	A	3.542e^-4	0.878	INTRON CG15249
2L	18909831	2L_18909831_DEL [dm3] 2L_18909831_DEL [dm6]	TTCGT	T	3.545e^-4	0.878	INTERGENIC
3R	26786558	3R_26786558_SNP [dm3] 3R_30960836_SNP [dm6]	G	T	3.548e^-4	0.878	NON_SYNONYMOUS_CODING CG15548
2L	1333660	2L_1333660_SNP [dm3] 2L_1333660_SNP [dm6]	A	G	3.558e^-4	0.878	UPSTREAM CG5440 INTERGENIC
3R	26630161	3R_26630161_SNP [dm3] 3R_30804439_SNP [dm6]	C	T	3.562e^-4	0.878	INTRON wts	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1326118	2L_1326118_DEL [dm3] 2L_1326118_DEL [dm6]	TG	T	3.576e^-4	0.878	INTERGENIC
2R	11989302	2R_11989302_SNP [dm3] 2R_16101797_SNP [dm6]	T	G	3.579e^-4	0.878	UPSTREAM Rho1 INTRON CG8414	TF binding site BDTNP1_TFBS_dl
2R	18157171	2R_18157171_SNP [dm3] 2R_22269666_SNP [dm6]	G	T	3.580e^-4	0.878	INTRON dve	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	15573547	X_15573547_SNP [dm3] X_15679514_SNP [dm6]	T	G	3.580e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18595374	3L_18595374_SNP [dm3] 3L_18602274_SNP [dm6]	A	T	3.585e^-4	0.878	UPSTREAM CG4174 INTRON CG4174 & 1 other
3L	18804679	3L_18804679_SNP [dm3] 3L_18811579_SNP [dm6]	C	T	3.588e^-4	0.878	INTRON CG14073
2R	17416408	2R_17416408_SNP [dm3] 2R_21528903_SNP [dm6]	C	T	3.598e^-4	0.878	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1340333	2L_1340333_SNP [dm3] 2L_1340333_SNP [dm6]	G	T	3.600e^-4	0.878	INTERGENIC
X	4719885	X_4719885_SNP [dm3] X_4825852_SNP [dm6]	C	T	3.601e^-4	0.878	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21343631	3L_21343631_SNP [dm3] 3L_21350531_SNP [dm6]	T	C	3.608e^-4	0.878	INTRON CG32436
3L	10247026	3L_10247026_SNP [dm3] 3L_10253926_SNP [dm6]	A	T	3.610e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	3.612e^-4	0.878	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3L	13400560	3L_13400560_SNP [dm3] 3L_13407460_SNP [dm6]	G	C	3.616e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1968982	2R_1968982_SNP [dm3] 2R_6081477_SNP [dm6]	A	G	3.623e^-4	0.878	UPSTREAM CG14590 INTRON Ars2
X	6770543	X_6770543_SNP [dm3] X_6876510_SNP [dm6]	T	A	3.624e^-4	0.878	NON_SYNONYMOUS_CODING CG43736 DOWNSTREAM CG43736 INTRON CG43736	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11857031	2R_11857031_SNP [dm3] 2R_15969526_SNP [dm6]	G	C	3.627e^-4	0.878	NON_SYNONYMOUS_CODING Strn-Mlck
3R	10975815	3R_10975815_SNP [dm3] 3R_15150093_SNP [dm6]	G	A	3.627e^-4	0.878	UPSTREAM Gyc88E INTERGENIC
2L	7321838	2L_7321838_SNP [dm3] 2L_7321838_SNP [dm6]	C	T	3.630e^-4	0.878	INTERGENIC
2L	21826201	2L_21826201_SNP [dm3] 2L_21826201_SNP [dm6]	T	C	3.632e^-4	0.878	INTERGENIC
2L	10048962	2L_10048962_SNP [dm3] 2L_10048962_SNP [dm6]	T	G	3.639e^-4	0.878	UPSTREAM CG33301 INTERGENIC
X	15314335	X_15314335_SNP [dm3] X_15420302_SNP [dm6]	C	T	3.643e^-4	0.878	UTR_5_PRIME Cngl
3R	18337222	3R_18337222_SNP [dm3] 3R_22511500_SNP [dm6]	A	C	3.644e^-4	0.878	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	11340718	2R_11340718_SNP [dm3] 2R_15453213_SNP [dm6]	A	C	3.645e^-4	0.878	INTRON CG43729
2R	7934266	2R_7934266_SNP [dm3] 2R_12046761_SNP [dm6]	A	G	3.650e^-4	0.878	INTRON Drep-1
2L	16065808	2L_16065808_SNP [dm3] 2L_16065808_SNP [dm6]	A	C	3.652e^-4	0.878	INTRON beat-Ia
3L	17944675	3L_17944675_SNP [dm3] 3L_17951575_SNP [dm6]	A	C	3.664e^-4	0.878	UTR_3_PRIME Eip75B DOWNSTREAM Eip75B
3R	15164399	3R_15164399_SNP [dm3] 3R_19338677_SNP [dm6]	A	G	3.675e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10041269	2L_10041269_SNP [dm3] 2L_10041269_SNP [dm6]	A	T	3.677e^-4	0.878	INTERGENIC
2L	7524718	2L_7524718_SNP [dm3] 2L_7524718_SNP [dm6]	G	T	3.684e^-4	0.878	INTRON RapGAP1
2L	16078546	2L_16078546_SNP [dm3] 2L_16078546_SNP [dm6]	G	T	3.690e^-4	0.878	INTRON beat-Ia
3R	26499264	3R_26499264_SNP [dm3] 3R_30673542_SNP [dm6]	C	A	3.696e^-4	0.878	INTERGENIC
2R	15490600	2R_15490600_SNP [dm3] 2R_19603095_SNP [dm6]	A	T	3.697e^-4	0.878	UPSTREAM CR44473 INTRON sm
2L	13055462	2L_13055462_SNP [dm3] 2L_13055462_SNP [dm6]	T	C	3.698e^-4	0.878	INTRON CG9932
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	3.701e^-4	0.878	UTR_3_PRIME CG31030
2R	7929392	2R_7929392_SNP [dm3] 2R_12041887_SNP [dm6]	G	A	3.705e^-4	0.878	SYNONYMOUS_CODING RpIII128
3L	14894179	3L_14894179_SNP [dm3] 3L_14901079_SNP [dm6]	C	T	3.705e^-4	0.878	INTERGENIC
3L	3055141	3L_3055141_SNP [dm3] 3L_3055141_SNP [dm6]	A	G	3.708e^-4	0.878	UTR_5_PRIME CG16753 DOWNSTREAM CG1271 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2907732	2L_2907732_SNP [dm3] 2L_2907732_SNP [dm6]	A	G	3.715e^-4	0.878	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3R	18603354	3R_18603354_SNP [dm3] 3R_22777632_SNP [dm6]	T	C	3.729e^-4	0.878	INTRON CG7029 EXON CR43654	TF binding site BDTNP1_TFBS_twi
2L	16342047	2L_16342047_SNP [dm3] 2L_16342047_SNP [dm6]	T	A	3.731e^-4	0.878	NON_SYNONYMOUS_CODING CG44405 DOWNSTREAM chif & 1 other
X	2561825	X_2561825_INS [dm3] X_2667792_INS [dm6]	A	CT	3.736e^-4	0.878	UPSTREAM sgg INTRON sgg
2R	7897858	2R_7897858_SNP [dm3] 2R_12010353_SNP [dm6]	C	A	3.737e^-4	0.878	INTRON otk	regulatory region REDfly_CRMs
2R	12747224	2R_12747224_SNP [dm3] 2R_16859719_SNP [dm6]	T	C	3.742e^-4	0.878	SYNONYMOUS_CODING Dek DOWNSTREAM Dek
2R	7929416	2R_7929416_SNP [dm3] 2R_12041911_SNP [dm6]	G	C	3.751e^-4	0.878	SYNONYMOUS_CODING RpIII128
X	463750	X_463750_SNP [dm3] X_569717_SNP [dm6]	T	C	3.766e^-4	0.878	UPSTREAM mir-4960 INTRON Appl	TF binding site mE1_TFBS_chinmo
2R	11351463	2R_11351463_SNP [dm3] 2R_15463958_SNP [dm6]	C	A	3.767e^-4	0.878	DOWNSTREAM CG43729 INTRON CG43729
3L	19118770	3L_19118770_INS [dm3] 3L_19125670_INS [dm6]	A	ACA	3.770e^-4	0.878	INTRON CG14082
2R	15508094	2R_15508094_SNP [dm3] 2R_19620589_SNP [dm6]	A	G	3.771e^-4	0.878	INTRON sm
2L	10567211	2L_10567211_SNP [dm3] 2L_10567211_SNP [dm6]	A	C	3.775e^-4	0.878	UPSTREAM CG6138 INTRON Trim9
3L	6609880	3L_6609880_SNP [dm3] 3L_6616780_SNP [dm6]	G	A	3.781e^-4	0.878	SYNONYMOUS_CODING CG8398
3R	21021733	3R_21021733_SNP [dm3] 3R_25196011_SNP [dm6]	G	A	3.782e^-4	0.878	SYNONYMOUS_CODING CG13653	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	18383554	X_18383554_SNP [dm3] X_18489521_SNP [dm6]	G	A	3.794e^-4	0.878	UTR_5_PRIME CG15046
2L	3425135	2L_3425135_SNP [dm3] 2L_3425135_SNP [dm6]	C	G	3.799e^-4	0.878	INTRON pgant2
2L	22001695	2L_22001695_DEL [dm3] 2L_22001695_DEL [dm6]	AAAATGACAACAATGAGCGT...	A	3.801e^-4	0.878	INTERGENIC
3L	2466615	3L_2466615_INS [dm3] 3L_2466615_INS [dm6]	T	TT	3.803e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23676008	3R_23676008_DEL [dm3] 3R_27850286_DEL [dm6]	TTTTTCATAA	T	3.814e^-4	0.878	INTRON CG34353
X	13206538	X_13206538_SNP [dm3] X_13312505_SNP [dm6]	C	T	3.817e^-4	0.878	INTRON IP3K2
3R	17347491	3R_17347491_SNP [dm3] 3R_21521769_SNP [dm6]	G	A	3.823e^-4	0.878	INTRON CG7956	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18302814	3L_18302814_SNP [dm3] 3L_18309714_SNP [dm6]	A	C	3.827e^-4	0.878	INTERGENIC
3R	18985073	3R_18985073_SNP [dm3] 3R_23159351_SNP [dm6]	G	T	3.831e^-4	0.878	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7805565	2R_7805565_SNP [dm3] 2R_11918060_SNP [dm6]	T	C	3.838e^-4	0.878	EXON CR44305
2L	1341990	2L_1341990_DEL [dm3] 2L_1341990_DEL [dm6]	AGGGTATTAAGTACTTAA...	A	3.838e^-4	0.878	SPLICE_SITE_REGION CG33923 INTRON CG33923
2L	1342009	2L_1342009_SNP [dm3] 2L_1342009_SNP [dm6]	G	A	3.838e^-4	0.878	INTRON CG33923
3L	2974367	3L_2974367_DEL [dm3] 3L_2974367_DEL [dm6]	AGTGTGGCTTCAACTTTTCC...	A	3.838e^-4	0.878	INTERGENIC
2L	17994030	2L_17994030_SNP [dm3] 2L_17994030_SNP [dm6]	T	C	3.839e^-4	0.878	EXON CR44767
3L	10683958	3L_10683958_SNP [dm3] 3L_10690858_SNP [dm6]	T	G	3.859e^-4	0.878	UPSTREAM CG11811 DOWNSTREAM simj INTERGENIC
2R	15934441	2R_15934441_SNP [dm3] 2R_20046936_SNP [dm6]	G	A	3.862e^-4	0.878	INTERGENIC
2L	1424450	2L_1424450_SNP [dm3] 2L_1424450_SNP [dm6]	A	C	3.870e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1406724	2L_1406724_SNP [dm3] 2L_1406724_SNP [dm6]	T	C	3.873e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1406754	2L_1406754_SNP [dm3] 2L_1406754_SNP [dm6]	T	A	3.873e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1406763	2L_1406763_SNP [dm3] 2L_1406763_SNP [dm6]	C	A	3.873e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7570732	3L_7570732_SNP [dm3] 3L_7577632_SNP [dm6]	C	G	3.874e^-4	0.878	INTERGENIC
2R	7444795	2R_7444795_SNP [dm3] 2R_11557290_SNP [dm6]	G	C	3.875e^-4	0.878	INTERGENIC
2L	8696346	2L_8696346_SNP [dm3] 2L_8696346_SNP [dm6]	T	C	3.885e^-4	0.878	INTRON Hnf4	TF binding site mE1_TFBS_cnc
X	8958249	X_8958249_SNP [dm3] X_9064216_SNP [dm6]	A	T	3.888e^-4	0.878	INTRON CG15365
3R	15678201	3R_15678201_SNP [dm3] 3R_19852479_SNP [dm6]	T	G	3.897e^-4	0.878	SPLICE_SITE_REGION CG4662 INTRON CG4662	TF binding site mE1_TFBS_cad
2L	9663094	2L_9663094_SNP [dm3] 2L_9663094_SNP [dm6]	T	G	3.898e^-4	0.878	INTERGENIC
3L	5268174	3L_5268174_SNP [dm3] 3L_5275074_SNP [dm6]	T	C	3.903e^-4	0.878	INTRON shep	TF binding site BDTNP1_TFBS_twi
3L	7570355	3L_7570355_SNP [dm3] 3L_7577255_SNP [dm6]	G	A	3.909e^-4	0.878	INTERGENIC
2L	6841324	2L_6841324_SNP [dm3] 2L_6841324_SNP [dm6]	T	C	3.918e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	16065648	2L_16065648_SNP [dm3] 2L_16065648_SNP [dm6]	C	A	3.922e^-4	0.878	INTRON beat-Ia
2R	9909348	2R_9909348_SNP [dm3] 2R_14021843_SNP [dm6]	G	A	3.935e^-4	0.878	INTRON mam
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	3.940e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	5524397	2R_5524397_DEL [dm3] 2R_9636892_DEL [dm6]	AA	T	3.941e^-4	0.878	DOWNSTREAM CR44070 INTRON Mmp2
3R	20549503	3R_20549503_SNP [dm3] 3R_24723781_SNP [dm6]	T	C	3.943e^-4	0.878	UPSTREAM snoRNA:Me18S-C1280 INTRON tok
3L	11934320	3L_11934320_SNP [dm3] 3L_11941220_SNP [dm6]	A	G	3.947e^-4	0.878	UPSTREAM Rpt4R INTERGENIC
3R	3401683	3R_3401683_DEL [dm3] 3R_7575961_DEL [dm6]	AGCA	A	3.952e^-4	0.878	INTRON CG34127
2R	19415926	2R_19415926_SNP [dm3] 2R_23528403_SNP [dm6]	G	A	3.972e^-4	0.878	NON_SYNONYMOUS_CODING bw DOWNSTREAM mi
2R	8658955	2R_8658955_SNP [dm3] 2R_12771450_SNP [dm6]	T	A	3.981e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	4274344	2R_4274344_SNP [dm3] 2R_8386839_SNP [dm6]	C	T	3.983e^-4	0.878	UPSTREAM pdm3 INTRON pdm3
2L	18152838	2L_18152838_SNP [dm3] 2L_18152838_SNP [dm6]	C	G	3.988e^-4	0.878	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	11857146	2R_11857146_SNP [dm3] 2R_15969641_SNP [dm6]	T	A	3.992e^-4	0.878	NON_SYNONYMOUS_CODING Strn-Mlck
3R	26752159	3R_26752159_SNP [dm3] 3R_30926437_SNP [dm6]	G	T	3.997e^-4	0.878	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	6454534	3L_6454534_SNP [dm3] 3L_6461434_SNP [dm6]	C	T	3.999e^-4	0.878	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18978571	3R_18978571_SNP [dm3] 3R_23152849_SNP [dm6]	G	A	4.002e^-4	0.878	UTR_3_PRIME unk DOWNSTREAM unk
2L	4156535	2L_4156535_SNP [dm3] 2L_4156535_SNP [dm6]	C	T	4.003e^-4	0.878	INTERGENIC
2R	7948563	2R_7948563_INS [dm3] 2R_12061058_INS [dm6]	C	CA	4.008e^-4	0.878	INTRON Drep-3
3R	17343345	3R_17343345_SNP [dm3] 3R_21517623_SNP [dm6]	C	T	4.009e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_cad
2R	20285072	2R_20285072_SNP [dm3] 2R_24397549_SNP [dm6]	C	G	4.014e^-4	0.878	NON_SYNONYMOUS_CODING slik	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9101069	2R_9101069_SNP [dm3] 2R_13213564_SNP [dm6]	A	T	4.018e^-4	0.878	INTRON AQP
3L	12550654	3L_12550654_SNP [dm3] 3L_12557554_SNP [dm6]	A	G	4.023e^-4	0.878	INTRON sowah
3L	4099785	3L_4099785_SNP [dm3] 3L_4099785_SNP [dm6]	T	C	4.044e^-4	0.878	INTRON CG14995	TF binding site mE1_TFBS_inv
3R	2976997	3R_2976997_SNP [dm3] 3R_7151275_SNP [dm6]	T	C	4.049e^-4	0.878	UPSTREAM Sas-4 & 1 other DOWNSTREAM CG2656 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14459311	2L_14459311_SNP [dm3] 2L_14459311_SNP [dm6]	C	G	4.052e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	1415911	2L_1415911_SNP [dm3] 2L_1415911_SNP [dm6]	C	G	4.052e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2466612	3L_2466612_SNP [dm3] 3L_2466612_SNP [dm6]	A	G	4.054e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	6015763	3R_6015763_SNP [dm3] 3R_10190041_SNP [dm6]	T	C	4.056e^-4	0.878	UPSTREAM CG12814 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	22118341	2L_22118341_SNP [dm3] 2L_22118341_SNP [dm6]	G	A	4.056e^-4	0.878	INTERGENIC	transposable element FlyBase
3L	7384906	3L_7384906_SNP [dm3] 3L_7391806_SNP [dm6]	A	G	4.063e^-4	0.878	INTRON CG8563
3L	2357622	3L_2357622_INS [dm3] 3L_2357622_INS [dm6]	A	ATATTTACA	4.066e^-4	0.878	INTERGENIC
2L	20946148	2L_20946148_SNP [dm3] 2L_20946148_SNP [dm6]	C	T	4.068e^-4	0.878	DOWNSTREAM CR44606 INTERGENIC
3R	21015870	3R_21015870_SNP [dm3] 3R_25190148_SNP [dm6]	C	T	4.068e^-4	0.878	SYNONYMOUS_CODING dan INTRON lobo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3876183	2L_3876183_SNP [dm3] 2L_3876183_SNP [dm6]	T	G	4.077e^-4	0.878	INTRON capu
3R	14281464	3R_14281464_SNP [dm3] 3R_18455742_SNP [dm6]	A	T	4.080e^-4	0.878	INTRON fru
3R	10546256	3R_10546256_SNP [dm3] 3R_14720534_SNP [dm6]	A	G	4.080e^-4	0.878	INTRON kibra	TF binding site BDTNP1_TFBS_dl
3L	12864561	3L_12864561_SNP [dm3] 3L_12871461_SNP [dm6]	G	A	4.082e^-4	0.878	INTERGENIC
2L	10060986	2L_10060986_SNP [dm3] 2L_10060986_SNP [dm6]	G	T	4.087e^-4	0.878	UTR_5_PRIME Spn31A DOWNSTREAM Pen
2L	1381579	2L_1381579_SNP [dm3] 2L_1381579_SNP [dm6]	A	C	4.088e^-4	0.878	SYNONYMOUS_CODING lea UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	8675175	2R_8675175_SNP [dm3] 2R_12787670_SNP [dm6]	G	C	4.089e^-4	0.878	INTRON sca EXON CR45137
2R	17084107	2R_17084107_SNP [dm3] 2R_21196602_SNP [dm6]	T	C	4.100e^-4	0.878	INTRON Lapsyn
3R	17344098	3R_17344098_SNP [dm3] 3R_21518376_SNP [dm6]	T	G	4.102e^-4	0.878	INTERGENIC
2L	4230236	2L_4230236_SNP [dm3] 2L_4230236_SNP [dm6]	T	G	4.103e^-4	0.878	DOWNSTREAM CR44608 INTERGENIC
2R	15984347	2R_15984347_SNP [dm3] 2R_20096842_SNP [dm6]	C	A	4.104e^-4	0.878	INTERGENIC
2L	1335954	2L_1335954_SNP [dm3] 2L_1335954_SNP [dm6]	C	T	4.105e^-4	0.878	DOWNSTREAM CG5440 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1335955	2L_1335955_SNP [dm3] 2L_1335955_SNP [dm6]	C	T	4.105e^-4	0.878	DOWNSTREAM CG5440 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	23843191	3L_23843191_SNP [dm3] 3L_23850091_SNP [dm6]	C	T	4.108e^-4	0.878	INTRON CG40470
3R	25874097	3R_25874097_SNP [dm3] 3R_30048375_SNP [dm6]	T	A	4.118e^-4	0.878	UTR_3_PRIME CG7943 UPSTREAM CR44046 DOWNSTREAM CG15528	TF binding site mE1_TFBS_cad
X	15578008	X_15578008_SNP [dm3] X_15683975_SNP [dm6]	C	T	4.130e^-4	0.878	DOWNSTREAM CG15599 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11325802	2R_11325802_SNP [dm3] 2R_15438297_SNP [dm6]	A	G	4.147e^-4	0.878	INTRON CG43729
2R	16788884	2R_16788884_SNP [dm3] 2R_20901379_SNP [dm6]	C	T	4.149e^-4	0.878	INTRON otp
2L	2907747	2L_2907747_SNP [dm3] 2L_2907747_SNP [dm6]	C	G	4.153e^-4	0.878	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
X	12722141	X_12722141_SNP [dm3] X_12828108_SNP [dm6]	C	T	4.164e^-4	0.878	INTRON Pde9
2R	11988355	2R_11988355_SNP [dm3] 2R_16100850_SNP [dm6]	A	T	4.164e^-4	0.878	SYNONYMOUS_CODING CG8414	TF binding site mE1_TFBS_sens
3L	10392127	3L_10392127_SNP [dm3] 3L_10399027_SNP [dm6]	G	A	4.165e^-4	0.878	INTERGENIC
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	4.174e^-4	0.878	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	8987513	X_8987513_SNP [dm3] X_9093480_SNP [dm6]	C	T	4.179e^-4	0.878	DOWNSTREAM CG7766 & 1 other INTERGENIC
2L	16314934	2L_16314934_SNP [dm3] 2L_16314934_SNP [dm6]	G	T	4.188e^-4	0.878	INTRON cact	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20259695	2L_20259695_SNP [dm3] 2L_20259695_SNP [dm6]	G	T	4.188e^-4	0.878	INTERGENIC
2R	9732944	2R_9732944_SNP [dm3] 2R_13845439_SNP [dm6]	C	A	4.191e^-4	0.878	UPSTREAM CG30484 INTRON Syngr	TF binding site BDTNP1_TFBS_dl
3L	2466468	3L_2466468_SNP [dm3] 3L_2466468_SNP [dm6]	G	A	4.201e^-4	0.878	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	14353778	X_14353778_SNP [dm3] X_14459745_SNP [dm6]	C	G	4.205e^-4	0.878	UTR_3_PRIME dpr8
3R	14387335	3R_14387335_SNP [dm3] 3R_18561613_SNP [dm6]	A	G	4.218e^-4	0.878	DOWNSTREAM CG7691 INTERGENIC
3R	14902408	3R_14902408_SNP [dm3] 3R_19076686_SNP [dm6]	C	G	4.221e^-4	0.878	INTRON cdi
X	20214330	X_20214330_SNP [dm3] X_20343303_SNP [dm6]	C	T	4.226e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24818445	3R_24818445_SNP [dm3] 3R_28992723_SNP [dm6]	T	A	4.233e^-4	0.878	DOWNSTREAM wat INTERGENIC
2L	1417270	2L_1417270_SNP [dm3] 2L_1417270_SNP [dm6]	G	A	4.235e^-4	0.878	INTRON lea	TF binding site mE1_TFBS_cad
2L	1419335	2L_1419335_SNP [dm3] 2L_1419335_SNP [dm6]	C	T	4.235e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1419892	2L_1419892_SNP [dm3] 2L_1419892_SNP [dm6]	G	A	4.235e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	1425448	2L_1425448_SNP [dm3] 2L_1425448_SNP [dm6]	T	C	4.235e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1293257	2L_1293257_SNP [dm3] 2L_1293257_SNP [dm6]	A	G	4.236e^-4	0.878	SYNONYMOUS_CODING robo3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9311193	2R_9311193_SNP [dm3] 2R_13423688_SNP [dm6]	G	C	4.237e^-4	0.878	UPSTREAM CG30060 INTRON CG42321
2R	13499941	2R_13499941_SNP [dm3] 2R_17612436_SNP [dm6]	C	T	4.247e^-4	0.878	INTRON CG10936
2L	7439800	2L_7439800_SNP [dm3] 2L_7439800_SNP [dm6]	T	C	4.248e^-4	0.878	UPSTREAM CG5973 INTRON CG5973
3R	26494805	3R_26494805_SNP [dm3] 3R_30669083_SNP [dm6]	A	G	4.254e^-4	0.878	INTERGENIC
3L	14926445	3L_14926445_SNP [dm3] 3L_14933345_SNP [dm6]	G	A	4.257e^-4	0.878	INTRON DCX-EMAP
2L	22118280	2L_22118280_SNP [dm3] 2L_22118280_SNP [dm6]	A	G	4.258e^-4	0.878	INTERGENIC	transposable element FlyBase
3L	17404161	3L_17404161_SNP [dm3] 3L_17411061_SNP [dm6]	T	A	4.260e^-4	0.878	INTRON blot	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
X	17706408	X_17706408_SNP [dm3] X_17812375_SNP [dm6]	G	A	4.266e^-4	0.878	INTRON OdsH	TF binding site mE1_TFBS_Trl
X	15999808	X_15999808_SNP [dm3] X_16105775_SNP [dm6]	C	T	4.268e^-4	0.878	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
X	4142239	X_4142239_SNP [dm3] X_4248206_SNP [dm6]	G	A	4.271e^-4	0.878	UPSTREAM CG43135 DOWNSTREAM CG43134 INTERGENIC
X	18254515	X_18254515_SNP [dm3] X_18360482_SNP [dm6]	C	T	4.277e^-4	0.878	INTRON CG6106	TF binding site mE1_TFBS_chinmo
2L	1374229	2L_1374229_SNP [dm3] 2L_1374229_SNP [dm6]	C	T	4.282e^-4	0.878	INTERGENIC
2L	1374606	2L_1374606_SNP [dm3] 2L_1374606_SNP [dm6]	G	A	4.282e^-4	0.878	INTERGENIC
2L	1387402	2L_1387402_SNP [dm3] 2L_1387402_SNP [dm6]	G	A	4.282e^-4	0.878	INTRON lea
2L	1397364	2L_1397364_SNP [dm3] 2L_1397364_SNP [dm6]	T	A	4.282e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1398812	2L_1398812_SNP [dm3] 2L_1398812_SNP [dm6]	G	T	4.282e^-4	0.878	INTRON lea
2L	1405806	2L_1405806_SNP [dm3] 2L_1405806_SNP [dm6]	C	A	4.282e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1405834	2L_1405834_SNP [dm3] 2L_1405834_SNP [dm6]	G	C	4.282e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20549643	3R_20549643_SNP [dm3] 3R_24723921_SNP [dm6]	T	C	4.287e^-4	0.878	DOWNSTREAM snoRNA:Me18S-C1280 INTRON tok
2L	16492839	2L_16492839_SNP [dm3] 2L_16492839_SNP [dm6]	T	G	4.288e^-4	0.878	INTRON Tpr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
3L	1277747	3L_1277747_SNP [dm3] 3L_1277747_SNP [dm6]	A	C	4.292e^-4	0.878	INTRON CG32333
2R	16268067	2R_16268067_SNP [dm3] 2R_20380562_SNP [dm6]	G	A	4.293e^-4	0.878	INTERGENIC
3L	4685700	3L_4685700_SNP [dm3] 3L_4685700_SNP [dm6]	T	C	4.294e^-4	0.878	INTRON axo
3L	10749270	3L_10749270_SNP [dm3] 3L_10756170_SNP [dm6]	T	C	4.308e^-4	0.878	INTERGENIC
X	11105090	X_11105090_SNP [dm3] X_11211057_SNP [dm6]	C	G	4.308e^-4	0.878	INTERGENIC
2L	20937330	2L_20937330_DEL [dm3] 2L_20937330_DEL [dm6]	TTTTATAGTT	T	4.309e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8675176	2R_8675176_SNP [dm3] 2R_12787671_SNP [dm6]	C	G	4.312e^-4	0.878	INTRON sca EXON CR45137
2L	1023703	2L_1023703_SNP [dm3] 2L_1023703_SNP [dm6]	C	T	4.316e^-4	0.878	INTRON IA-2
X	11105019	X_11105019_SNP [dm3] X_11210986_SNP [dm6]	T	G	4.318e^-4	0.878	INTERGENIC
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	4.318e^-4	0.878	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
3R	19126804	3R_19126804_SNP [dm3] 3R_23301082_SNP [dm6]	C	T	4.318e^-4	0.878	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2338492	3L_2338492_INS [dm3] 3L_2338492_INS [dm6]	T	TCACT	4.327e^-4	0.878	INTRON MsR1
3L	17405042	3L_17405042_SNP [dm3] 3L_17411942_SNP [dm6]	A	C	4.328e^-4	0.878	INTRON blot
3L	13394147	3L_13394147_SNP [dm3] 3L_13401047_SNP [dm6]	A	C	4.330e^-4	0.878	UTR_5_PRIME sens	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16288966	3R_16288966_SNP [dm3] 3R_20463244_SNP [dm6]	G	T	4.330e^-4	0.878	INTRON Gfrl
X	11162626	X_11162626_SNP [dm3] X_11268593_SNP [dm6]	A	C	4.331e^-4	0.878	INTRON CG44422
2L	6282149	2L_6282149_SNP [dm3] 2L_6282149_SNP [dm6]	C	T	4.334e^-4	0.878	INTRON Ddr	TF binding site mE1_TFBS_chinmo
3L	21343615	3L_21343615_SNP [dm3] 3L_21350515_SNP [dm6]	T	A	4.338e^-4	0.878	INTRON CG32436
2L	1358878	2L_1358878_SNP [dm3] 2L_1358878_SNP [dm6]	G	A	4.342e^-4	0.878	DOWNSTREAM CG31659 & 1 other INTERGENIC
2R	6645450	2R_6645450_SNP [dm3] 2R_10757945_SNP [dm6]	C	G	4.348e^-4	0.878	INTRON CG33144
X	14353247	X_14353247_SNP [dm3] X_14459214_SNP [dm6]	C	A	4.349e^-4	0.878	NON_SYNONYMOUS_CODING dpr8
2L	10567222	2L_10567222_SNP [dm3] 2L_10567222_SNP [dm6]	T	A	4.352e^-4	0.878	UPSTREAM CG6138 INTRON Trim9
X	12318509	X_12318509_SNP [dm3] X_12424476_SNP [dm6]	C	G	4.353e^-4	0.878	INTERGENIC
3L	14894470	3L_14894470_SNP [dm3] 3L_14901370_SNP [dm6]	T	C	4.355e^-4	0.878	INTERGENIC
X	11162492	X_11162492_SNP [dm3] X_11268459_SNP [dm6]	A	G	4.359e^-4	0.878	INTRON CG44422
2L	16491408	2L_16491408_SNP [dm3] 2L_16491408_SNP [dm6]	C	T	4.360e^-4	0.878	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
X	8155366	X_8155366_SNP [dm3] X_8261333_SNP [dm6]	C	T	4.368e^-4	0.878	INTRON CG1632
2L	1244952	2L_1244952_SNP [dm3] 2L_1244952_SNP [dm6]	T	C	4.372e^-4	0.878	INTERGENIC
3L	1251041	3L_1251041_SNP [dm3] 3L_1251041_SNP [dm6]	C	T	4.382e^-4	0.878	SYNONYMOUS_CODING CG9129 UPSTREAM CG9130 & 1 other DOWNSTREAM Sac1	TF binding site mE1_TFBS_cad
2R	17721481	2R_17721481_SNP [dm3] 2R_21833976_SNP [dm6]	A	C	4.385e^-4	0.878	UPSTREAM CG34040 DOWNSTREAM CG4363 INTERGENIC
2R	14173296	2R_14173296_SNP [dm3] 2R_18285791_SNP [dm6]	G	A	4.387e^-4	0.878	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5112849	2L_5112849_SNP [dm3] 2L_5112849_SNP [dm6]	T	G	4.389e^-4	0.878	INTRON Msp300	TF binding site BDTNP1_TFBS_twi
2R	16213736	2R_16213736_SNP [dm3] 2R_20326231_SNP [dm6]	C	T	4.389e^-4	0.878	SYNONYMOUS_CODING MED8 DOWNSTREAM CG8920	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	13067923	X_13067923_SNP [dm3] X_13173890_SNP [dm6]	C	T	4.390e^-4	0.878	INTRON CG34411	TF binding site BDTNP1_TFBS_dl
3L	11550832	3L_11550832_DEL [dm3] 3L_11557732_DEL [dm6]	ACTGCAAATC	A	4.398e^-4	0.878	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11550846	3L_11550846_DEL [dm3] 3L_11557746_DEL [dm6]	GCAA	TT	4.398e^-4	0.878	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11736376	3L_11736376_SNP [dm3] 3L_11743276_SNP [dm6]	A	G	4.400e^-4	0.878	INTRON CG6024
2L	1327797	2L_1327797_DEL [dm3] 2L_1327797_DEL [dm6]	AT	A	4.404e^-4	0.878	INTERGENIC
2L	1327800	2L_1327800_SNP [dm3] 2L_1327800_SNP [dm6]	T	A	4.404e^-4	0.878	INTERGENIC
2L	1330020	2L_1330020_SNP [dm3] 2L_1330020_SNP [dm6]	A	T	4.404e^-4	0.878	DOWNSTREAM a5 INTERGENIC
2L	1330062	2L_1330062_SNP [dm3] 2L_1330062_SNP [dm6]	C	G	4.404e^-4	0.878	DOWNSTREAM a5 INTERGENIC
2L	1330518	2L_1330518_SNP [dm3] 2L_1330518_SNP [dm6]	G	A	4.404e^-4	0.878	DOWNSTREAM a5 INTERGENIC
2L	1330584	2L_1330584_SNP [dm3] 2L_1330584_SNP [dm6]	A	T	4.404e^-4	0.878	DOWNSTREAM a5 INTERGENIC
2L	1331840	2L_1331840_SNP [dm3] 2L_1331840_SNP [dm6]	C	T	4.404e^-4	0.878	INTERGENIC
2L	1347281	2L_1347281_SNP [dm3] 2L_1347281_SNP [dm6]	A	G	4.404e^-4	0.878	UPSTREAM CR45006 INTERGENIC
2L	1361978	2L_1361978_SNP [dm3] 2L_1361978_SNP [dm6]	C	T	4.404e^-4	0.878	UPSTREAM NLaz INTERGENIC	TF binding site mE1_TFBS_cad
2L	1364608	2L_1364608_SNP [dm3] 2L_1364608_SNP [dm6]	T	C	4.404e^-4	0.878	INTERGENIC
2L	1364820	2L_1364820_SNP [dm3] 2L_1364820_SNP [dm6]	G	A	4.404e^-4	0.878	INTERGENIC
2R	16434875	2R_16434875_SNP [dm3] 2R_20547370_SNP [dm6]	A	G	4.411e^-4	0.878	SYNONYMOUS_CODING CG30148 DOWNSTREAM Obp57e & 2 others
2R	16448299	2R_16448299_SNP [dm3] 2R_20560794_SNP [dm6]	A	G	4.420e^-4	0.878	DOWNSTREAM lms INTRON Mgat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26948214	3R_26948214_SNP [dm3] 3R_31122492_SNP [dm6]	G	A	4.428e^-4	0.878	DOWNSTREAM Prosalpha3T INTERGENIC
3R	23121119	3R_23121119_SNP [dm3] 3R_27295397_SNP [dm6]	T	C	4.435e^-4	0.878	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19379226	2L_19379226_SNP [dm3] 2L_19379226_SNP [dm6]	A	G	4.437e^-4	0.878	INTERGENIC
2L	8665141	2L_8665141_SNP [dm3] 2L_8665141_SNP [dm6]	A	T	4.444e^-4	0.878	INTRON Sema-1a
2L	1418039	2L_1418039_SNP [dm3] 2L_1418039_SNP [dm6]	T	A	4.449e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	17676045	2R_17676045_SNP [dm3] 2R_21788540_SNP [dm6]	A	C	4.453e^-4	0.878	INTERGENIC
3L	5993292	3L_5993292_SNP [dm3] 3L_6000192_SNP [dm6]	G	T	4.469e^-4	0.878	INTRON PVRAP
3R	17288770	3R_17288770_SNP [dm3] 3R_21463048_SNP [dm6]	A	T	4.470e^-4	0.878	INTERGENIC
2L	20246910	2L_20246910_SNP [dm3] 2L_20246910_SNP [dm6]	C	T	4.472e^-4	0.878	INTERGENIC
3R	21470242	3R_21470242_SNP [dm3] 3R_25644520_SNP [dm6]	T	A	4.472e^-4	0.878	INTRON jigr1
3R	21470250	3R_21470250_SNP [dm3] 3R_25644528_SNP [dm6]	A	G	4.472e^-4	0.878	INTRON jigr1
3R	21470256	3R_21470256_SNP [dm3] 3R_25644534_SNP [dm6]	C	A	4.472e^-4	0.878	INTRON jigr1
3R	21470261	3R_21470261_SNP [dm3] 3R_25644539_SNP [dm6]	G	T	4.472e^-4	0.878	INTRON jigr1
3L	14944320	3L_14944320_SNP [dm3] 3L_14951220_SNP [dm6]	C	T	4.475e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi transposable element FlyBase
2L	22118435	2L_22118435_SNP [dm3] 2L_22118435_SNP [dm6]	C	T	4.478e^-4	0.878	INTERGENIC	transposable element FlyBase
2R	10658198	2R_10658198_SNP [dm3] 2R_14770693_SNP [dm6]	C	T	4.482e^-4	0.878	SYNONYMOUS_CODING BEAF-32 UTR_5_PRIME CG42254 UPSTREAM BEAF-32 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	21381005	3R_21381005_SNP [dm3] 3R_25555283_SNP [dm6]	C	T	4.484e^-4	0.878	INTRON msi
2L	1419346	2L_1419346_SNP [dm3] 2L_1419346_SNP [dm6]	C	A	4.492e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1364052	2L_1364052_DEL [dm3] 2L_1364052_DEL [dm6]	CC	C	4.493e^-4	0.878	INTERGENIC
2R	13976258	2R_13976258_SNP [dm3] 2R_18088753_SNP [dm6]	G	A	4.497e^-4	0.878	INTRON CG34386
2L	1406957	2L_1406957_SNP [dm3] 2L_1406957_SNP [dm6]	G	C	4.500e^-4	0.878	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16775619	2R_16775619_SNP [dm3] 2R_20888114_SNP [dm6]	G	C	4.504e^-4	0.878	INTRON otp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	24252419	3L_24252419_SNP [dm3] 3L_24259319_SNP [dm6]	C	T	4.518e^-4	0.878	INTRON Snap25
3L	18553973	3L_18553973_SNP [dm3] 3L_18560873_SNP [dm6]	T	A	4.521e^-4	0.878	INTRON AstC-R1
2L	21910415	2L_21910415_SNP [dm3] 2L_21910415_SNP [dm6]	C	T	4.527e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_sens
2R	9767181	2R_9767181_SNP [dm3] 2R_13879676_SNP [dm6]	G	A	4.545e^-4	0.878	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2882606	3L_2882606_SNP [dm3] 3L_2882606_SNP [dm6]	T	A	4.562e^-4	0.878	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	2882607	3L_2882607_SNP [dm3] 3L_2882607_SNP [dm6]	G	T	4.562e^-4	0.878	UPSTREAM CR44531 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	16006494	3L_16006494_MNP [dm3] 3L_16013394_MNP [dm6]	CCC	ATA	4.580e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	21325068	3L_21325068_SNP [dm3] 3L_21331968_SNP [dm6]	T	C	4.583e^-4	0.878	INTRON Rab26
2L	1622520	2L_1622520_SNP [dm3] 2L_1622520_SNP [dm6]	G	T	4.589e^-4	0.878	EXON CR44603
2R	20627462	2R_20627462_SNP [dm3] 2R_24739939_SNP [dm6]	C	T	4.593e^-4	0.878	UPSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3578982	2R_3578982_DEL [dm3] 2R_7691477_DEL [dm6]	TCCACTTTTT	T	4.598e^-4	0.878	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13867496	2R_13867496_SNP [dm3] 2R_17979991_SNP [dm6]	C	T	4.601e^-4	0.878	INTRON dpr13
3L	16006485	3L_16006485_SNP [dm3] 3L_16013385_SNP [dm6]	C	A	4.606e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	5495497	3R_5495497_SNP [dm3] 3R_9669775_SNP [dm6]	C	G	4.606e^-4	0.878	SYNONYMOUS_CODING CG9492	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5454662	2L_5454662_SNP [dm3] 2L_5454662_SNP [dm6]	C	T	4.608e^-4	0.878	INTERGENIC
2L	1380029	2L_1380029_SNP [dm3] 2L_1380029_SNP [dm6]	C	A	4.610e^-4	0.878	DOWNSTREAM CR44898 & 1 other INTERGENIC
3L	17276576	3L_17276576_SNP [dm3] 3L_17283476_SNP [dm6]	A	T	4.622e^-4	0.878	INTERGENIC
3R	26659962	3R_26659962_SNP [dm3] 3R_30834240_SNP [dm6]	G	A	4.624e^-4	0.878	INTRON CG15544
2L	1372027	2L_1372027_SNP [dm3] 2L_1372027_SNP [dm6]	A	T	4.627e^-4	0.878	INTERGENIC
2R	9971891	2R_9971891_SNP [dm3] 2R_14084386_SNP [dm6]	T	G	4.636e^-4	0.878	INTRON Prosap	TF binding site mE1_TFBS_bab1
2L	1331023	2L_1331023_SNP [dm3] 2L_1331023_SNP [dm6]	G	C	4.638e^-4	0.878	INTERGENIC
X	3551302	X_3551302_SNP [dm3] X_3657269_SNP [dm6]	G	T	4.641e^-4	0.878	INTRON AstA-R1
3L	15283753	3L_15283753_SNP [dm3] 3L_15290653_SNP [dm6]	G	T	4.643e^-4	0.878	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23681424	3R_23681424_INS [dm3] 3R_27855702_INS [dm6]	T	TT	4.643e^-4	0.878	INTRON CG34353
2R	16654624	2R_16654624_SNP [dm3] 2R_20767119_SNP [dm6]	G	A	4.646e^-4	0.878	DOWNSTREAM CR44665 EXON CR44665
X	4383394	X_4383394_SNP [dm3] X_4489361_SNP [dm6]	T	C	4.653e^-4	0.878	INTRON CR32773
2L	8009910	2L_8009910_SNP [dm3] 2L_8009910_SNP [dm6]	A	G	4.654e^-4	0.878	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1358078	2L_1358078_SNP [dm3] 2L_1358078_SNP [dm6]	A	G	4.658e^-4	0.878	DOWNSTREAM CG31659 INTERGENIC
3L	1264604	3L_1264604_SNP [dm3] 3L_1264604_SNP [dm6]	C	G	4.661e^-4	0.878	INTRON CG9134
2L	1333981	2L_1333981_SNP [dm3] 2L_1333981_SNP [dm6]	G	A	4.665e^-4	0.878	UPSTREAM CG5440 INTERGENIC
X	11105033	X_11105033_SNP [dm3] X_11211000_SNP [dm6]	A	G	4.666e^-4	0.878	INTERGENIC
2L	5430123	2L_5430123_SNP [dm3] 2L_5430123_SNP [dm6]	C	A	4.679e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15116083	3L_15116083_SNP [dm3] 3L_15122983_SNP [dm6]	G	A	4.680e^-4	0.878	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
3R	23127441	3R_23127441_SNP [dm3] 3R_27301719_SNP [dm6]	C	T	4.681e^-4	0.878	INTRON CG3339	TF binding site mE1_TFBS_cnc
2L	1330441	2L_1330441_SNP [dm3] 2L_1330441_SNP [dm6]	T	G	4.683e^-4	0.878	DOWNSTREAM a5 INTERGENIC
2L	1380013	2L_1380013_SNP [dm3] 2L_1380013_SNP [dm6]	C	G	4.683e^-4	0.878	DOWNSTREAM CR44898 & 1 other INTERGENIC
3L	16006489	3L_16006489_SNP [dm3] 3L_16013389_SNP [dm6]	T	C	4.687e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	1788335	3R_1788335_SNP [dm3] 3R_5962613_SNP [dm6]	T	G	4.689e^-4	0.878	INTERGENIC
3L	16006500	3L_16006500_SNP [dm3] 3L_16013400_SNP [dm6]	A	T	4.693e^-4	0.878	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	17345756	3R_17345756_DEL [dm3] 3R_21520034_DEL [dm6]	TTTATATATTTAATGCAAAG...	T	4.695e^-4	0.878	UPSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	23125233	3R_23125233_SNP [dm3] 3R_27299511_SNP [dm6]	T	G	4.705e^-4	0.878	INTRON CG3339
2R	12131857	2R_12131857_SNP [dm3] 2R_16244352_SNP [dm6]	T	A	4.708e^-4	0.878	INTRON CngA	TF binding site mE1_TFBS_inv
X	17825968	X_17825968_SNP [dm3] X_17931935_SNP [dm6]	T	G	4.713e^-4	0.878	INTRON Sh
2L	1333397	2L_1333397_SNP [dm3] 2L_1333397_SNP [dm6]	G	C	4.717e^-4	0.878	UPSTREAM CG5440 INTERGENIC
2L	1348713	2L_1348713_SNP [dm3] 2L_1348713_SNP [dm6]	G	T	4.717e^-4	0.878	INTERGENIC
3L	6505644	3L_6505644_SNP [dm3] 3L_6512544_SNP [dm6]	C	T	4.722e^-4	0.878	INTRON sfl
2R	10657721	2R_10657721_SNP [dm3] 2R_14770216_SNP [dm6]	A	C	4.732e^-4	0.878	UTR_5_PRIME CG42254 UPSTREAM Spred & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	18665570	2R_18665570_SNP [dm3] 2R_22778065_SNP [dm6]	G	A	4.740e^-4	0.878	INTRON CG42260

By genomic position
Variant impact
Gene name

pc_Tibia_Leg_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results