DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.218e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1963 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	9.098e^-7	0.513	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2L	19883397	2L_19883397_SNP [dm3] 2L_19883397_SNP [dm6]	C	T	1.015e^-6	0.513	INTRON sick
3R	15799737	3R_15799737_SNP [dm3] 3R_19974015_SNP [dm6]	C	G	1.176e^-6	0.513	SYNONYMOUS_CODING CG31213 INTRON Hs6st
2L	19900928	2L_19900928_SNP [dm3] 2L_19900928_SNP [dm6]	G	A	1.309e^-6	0.513	INTRON sick
2L	19915691	2L_19915691_SNP [dm3] 2L_19915691_SNP [dm6]	T	C	1.465e^-6	0.513	INTRON sick	TF binding site mE1_TFBS_bab1
2L	19870226	2L_19870226_SNP [dm3] 2L_19870226_SNP [dm6]	C	A	1.644e^-6	0.513	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2662801	3L_2662801_SNP [dm3] 3L_2662801_SNP [dm6]	A	C	2.297e^-6	0.615	INTRON Fife & 1 other
3L	8644964	3L_8644964_SNP [dm3] 3L_8651864_SNP [dm6]	A	T	3.900e^-6	0.713	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
2L	19916000	2L_19916000_SNP [dm3] 2L_19916000_SNP [dm6]	A	C	4.085e^-6	0.713	INTRON sick
2L	19916065	2L_19916065_DEL [dm3] 2L_19916065_DEL [dm6]	TTAAGT	T	5.416e^-6	0.713	INTRON sick
X	8004979	X_8004979_SNP [dm3] X_8110946_SNP [dm6]	G	T	6.717e^-6	0.713	INTRON Gclc
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	6.987e^-6	0.713	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	7.498e^-6	0.713	INTRON phl & 1 other
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	7.826e^-6	0.713	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3R	17765423	3R_17765423_SNP [dm3] 3R_21939701_SNP [dm6]	T	A	7.951e^-6	0.713	INTERGENIC
2L	19875610	2L_19875610_SNP [dm3] 2L_19875610_SNP [dm6]	G	T	1.006e^-5	0.713	INTRON sick	TF binding site mE1_TFBS_cad
2L	19870120	2L_19870120_SNP [dm3] 2L_19870120_SNP [dm6]	A	G	1.019e^-5	0.713	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16615952	X_16615952_SNP [dm3] X_16721919_SNP [dm6]	T	A	1.022e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
3R	26612396	3R_26612396_SNP [dm3] 3R_30786674_SNP [dm6]	G	T	1.030e^-5	0.713	UTR_3_PRIME zfh1	TF binding site BDTNP1_TFBS_sna
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	1.069e^-5	0.713	DOWNSTREAM CG14476 INTERGENIC
X	5891600	X_5891600_SNP [dm3] X_5997567_SNP [dm6]	T	C	1.154e^-5	0.713	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19916044	2L_19916044_SNP [dm3] 2L_19916044_SNP [dm6]	A	T	1.221e^-5	0.713	INTRON sick
3L	21549601	3L_21549601_SNP [dm3] 3L_21556501_SNP [dm6]	A	G	1.271e^-5	0.713	SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
X	16822807	X_16822807_SNP [dm3] X_16928774_SNP [dm6]	G	T	1.307e^-5	0.713	INTRON CG4928
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	1.319e^-5	0.713	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	16710716	X_16710716_DEL [dm3] X_16816683_DEL [dm6]	AG	T	1.348e^-5	0.713	UPSTREAM CG4829 & 1 other INTRON CG4829
X	16710714	X_16710714_SNP [dm3] X_16816681_SNP [dm6]	A	G	1.363e^-5	0.713	UPSTREAM CG4829 & 1 other INTRON CG4829
X	16615909	X_16615909_SNP [dm3] X_16721876_SNP [dm6]	C	T	1.388e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
X	10082998	X_10082998_SNP [dm3] X_10188965_SNP [dm6]	C	G	1.421e^-5	0.713	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
3R	17765430	3R_17765430_SNP [dm3] 3R_21939708_SNP [dm6]	A	T	1.440e^-5	0.713	INTERGENIC
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	1.552e^-5	0.713	INTRON sfl
2L	20245125	2L_20245125_SNP [dm3] 2L_20245125_SNP [dm6]	A	C	1.637e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23550477	3R_23550477_SNP [dm3] 3R_27724755_SNP [dm6]	T	G	1.660e^-5	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20357891	2R_20357891_SNP [dm3] 2R_24470368_SNP [dm6]	G	T	1.674e^-5	0.713	INTRON CG13579
X	16615953	X_16615953_SNP [dm3] X_16721920_SNP [dm6]	A	C	1.683e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
2L	20327205	2L_20327205_SNP [dm3] 2L_20327205_SNP [dm6]	T	A	1.760e^-5	0.713	INTRON spir
X	16615946	X_16615946_SNP [dm3] X_16721913_SNP [dm6]	T	C	1.826e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
2L	19916115	2L_19916115_SNP [dm3] 2L_19916115_SNP [dm6]	A	G	1.838e^-5	0.713	INTRON sick
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	1.847e^-5	0.713	DOWNSTREAM CG14476 INTERGENIC
2R	16130617	2R_16130617_SNP [dm3] 2R_20243112_SNP [dm6]	G	T	1.886e^-5	0.713	DOWNSTREAM Efhc1.2 INTRON CG11208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20357892	2R_20357892_SNP [dm3] 2R_24470369_SNP [dm6]	C	G	1.891e^-5	0.713	INTRON CG13579
3R	26679232	3R_26679232_SNP [dm3] 3R_30853510_SNP [dm6]	A	T	1.895e^-5	0.713	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8171510	2L_8171510_SNP [dm3] 2L_8171510_SNP [dm6]	C	T	1.940e^-5	0.713	INTRON Piezo
2L	19916055	2L_19916055_SNP [dm3] 2L_19916055_SNP [dm6]	T	A	1.970e^-5	0.713	INTRON sick
2L	20384935	2L_20384935_SNP [dm3] 2L_20384935_SNP [dm6]	T	A	2.045e^-5	0.713	DOWNSTREAM CG10947 INTERGENIC
3L	8645168	3L_8645168_SNP [dm3] 3L_8652068_SNP [dm6]	C	T	2.067e^-5	0.713	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	6372868	2R_6372868_SNP [dm3] 2R_10485363_SNP [dm6]	A	T	2.111e^-5	0.713	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	2.146e^-5	0.713	INTRON CG42540
2R	10176472	2R_10176472_SNP [dm3] 2R_14288967_SNP [dm6]	G	A	2.211e^-5	0.713	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	20718546	3L_20718546_SNP [dm3] 3L_20725446_SNP [dm6]	C	G	2.224e^-5	0.713	INTERGENIC
3L	18180510	3L_18180510_SNP [dm3] 3L_18187410_SNP [dm6]	C	T	2.268e^-5	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15799764	3R_15799764_SNP [dm3] 3R_19974042_SNP [dm6]	C	T	2.290e^-5	0.713	SYNONYMOUS_CODING CG31213 INTRON Hs6st
3L	21549626	3L_21549626_SNP [dm3] 3L_21556526_SNP [dm6]	G	C	2.321e^-5	0.713	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2R	14665587	2R_14665587_SNP [dm3] 2R_18778082_SNP [dm6]	A	T	2.363e^-5	0.713	DOWNSTREAM CR43964 INTERGENIC
3L	12108712	3L_12108712_SNP [dm3] 3L_12115612_SNP [dm6]	T	G	2.372e^-5	0.713	UPSTREAM l_3_j2D3 INTERGENIC
X	16615937	X_16615937_DEL [dm3] X_16721904_DEL [dm6]	TAACG	T	2.399e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
2L	5089074	2L_5089074_SNP [dm3] 2L_5089074_SNP [dm6]	A	C	2.410e^-5	0.713	INTRON pgant5
2L	19885070	2L_19885070_SNP [dm3] 2L_19885070_SNP [dm6]	A	T	2.548e^-5	0.713	INTRON sick
3R	15405960	3R_15405960_SNP [dm3] 3R_19580238_SNP [dm6]	C	T	2.585e^-5	0.713	INTRON Dys
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	2.601e^-5	0.713	INTRON sfl
3R	26710952	3R_26710952_SNP [dm3] 3R_30885230_SNP [dm6]	C	T	2.615e^-5	0.713	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26710958	3R_26710958_SNP [dm3] 3R_30885236_SNP [dm6]	T	A	2.615e^-5	0.713	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6503400	3L_6503400_SNP [dm3] 3L_6510300_SNP [dm6]	G	C	2.625e^-5	0.713	INTRON sfl
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	2.706e^-5	0.713	INTRON bnl
X	4510794	X_4510794_SNP [dm3] X_4616761_SNP [dm6]	G	T	2.712e^-5	0.713	UPSTREAM peb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
X	16615943	X_16615943_SNP [dm3] X_16721910_SNP [dm6]	G	C	2.749e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
2L	13890960	2L_13890960_SNP [dm3] 2L_13890960_SNP [dm6]	C	T	2.767e^-5	0.713	INTRON CenG1A	TF binding site mE1_TFBS_HSA
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	2.769e^-5	0.713	INTERGENIC
2L	19870196	2L_19870196_SNP [dm3] 2L_19870196_SNP [dm6]	A	T	2.784e^-5	0.713	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16615945	X_16615945_SNP [dm3] X_16721912_SNP [dm6]	A	T	2.791e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
X	16615898	X_16615898_SNP [dm3] X_16721865_SNP [dm6]	C	T	2.798e^-5	0.713	UPSTREAM CG34325 INTRON CG32572
X	21373374	X_21373374_SNP [dm3] X_21502347_SNP [dm6]	A	G	2.804e^-5	0.713	INTRON CR45082
3R	6467228	3R_6467228_SNP [dm3] 3R_10641506_SNP [dm6]	T	A	2.814e^-5	0.713	EXON CR44018	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3688849	3L_3688849_SNP [dm3] 3L_3688849_SNP [dm6]	A	T	2.828e^-5	0.713	EXON CR43484
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	2.884e^-5	0.713	UPSTREAM CG43366 INTERGENIC
3L	6760777	3L_6760777_SNP [dm3] 3L_6767677_SNP [dm6]	T	C	2.933e^-5	0.713	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	3693285	2L_3693285_SNP [dm3] 2L_3693285_SNP [dm6]	T	C	2.973e^-5	0.713	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3R	26752748	3R_26752748_SNP [dm3] 3R_30927026_SNP [dm6]	G	A	2.999e^-5	0.713	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	21464154	X_21464154_SNP [dm3] X_21593127_SNP [dm6]	C	A	3.007e^-5	0.713	INTERGENIC
2L	10266205	2L_10266205_SNP [dm3] 2L_10266205_SNP [dm6]	A	T	3.095e^-5	0.719	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953 DOWNSTREAM CG18619
2L	20327227	2L_20327227_INS [dm3] 2L_20327227_INS [dm6]	T	TTGAAT	3.107e^-5	0.719	INTRON spir
3L	19947312	3L_19947312_SNP [dm3] 3L_19954212_SNP [dm6]	C	T	3.183e^-5	0.727	SYNONYMOUS_CODING CG42654 UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	9779398	2L_9779398_SNP [dm3] 2L_9779398_SNP [dm6]	C	T	3.354e^-5	0.757	INTERGENIC
X	16615948	X_16615948_SNP [dm3] X_16721915_SNP [dm6]	T	A	3.424e^-5	0.764	UPSTREAM CG34325 INTRON CG32572
X	14348501	X_14348501_SNP [dm3] X_14454468_SNP [dm6]	G	A	3.494e^-5	0.77	INTRON dpr8
3L	8645179	3L_8645179_SNP [dm3] 3L_8652079_SNP [dm6]	C	A	3.536e^-5	0.77	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3688855	3L_3688855_SNP [dm3] 3L_3688855_SNP [dm6]	G	A	3.656e^-5	0.787	EXON CR43484
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	3.867e^-5	0.789	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19897691	2L_19897691_SNP [dm3] 2L_19897691_SNP [dm6]	G	C	3.873e^-5	0.789	INTRON sick
3L	11011147	3L_11011147_SNP [dm3] 3L_11018047_SNP [dm6]	G	A	3.879e^-5	0.789	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11851353	2R_11851353_SNP [dm3] 2R_15963848_SNP [dm6]	T	G	3.895e^-5	0.789	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15826545	3R_15826545_SNP [dm3] 3R_20000823_SNP [dm6]	C	A	3.952e^-5	0.789	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	20357887	2R_20357887_SNP [dm3] 2R_24470364_SNP [dm6]	T	G	3.973e^-5	0.789	INTRON CG13579
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	3.998e^-5	0.789	INTERGENIC
3R	11869672	3R_11869672_SNP [dm3] 3R_16043950_SNP [dm6]	C	T	3.999e^-5	0.789	DOWNSTREAM CG10407 INTRON CG10264
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	4.070e^-5	0.794	INTRON sick	TF binding site mE1_TFBS_cad
X	16615962	X_16615962_DEL [dm3] X_16721929_DEL [dm6]	TTTAT	T	4.136e^-5	0.799	UPSTREAM CG34325 INTRON CG32572
2L	10014241	2L_10014241_SNP [dm3] 2L_10014241_SNP [dm6]	C	T	4.227e^-5	0.807	NON_SYNONYMOUS_CODING CG13131
3R	15826546	3R_15826546_SNP [dm3] 3R_20000824_SNP [dm6]	C	T	4.287e^-5	0.807	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	23075262	3L_23075262_DEL [dm3] 3L_23082162_DEL [dm6]	AAAATCCA	A	4.307e^-5	0.807	INTERGENIC
3R	26678413	3R_26678413_SNP [dm3] 3R_30852691_SNP [dm6]	A	C	4.428e^-5	0.822	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1717804	2L_1717804_SNP [dm3] 2L_1717804_SNP [dm6]	T	C	4.770e^-5	0.827	SYNONYMOUS_CODING Rim2
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	4.853e^-5	0.827	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	4.866e^-5	0.827	INTRON gish
3L	6501883	3L_6501883_SNP [dm3] 3L_6508783_SNP [dm6]	G	A	4.939e^-5	0.827	INTRON sfl
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	5.098e^-5	0.827	INTERGENIC
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	5.130e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	15468873	3R_15468873_SNP [dm3] 3R_19643151_SNP [dm6]	A	T	5.168e^-5	0.827	UTR_3_PRIME Vha13 UPSTREAM subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6036815	2L_6036815_SNP [dm3] 2L_6036815_SNP [dm6]	C	G	5.189e^-5	0.827	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6036816	2L_6036816_SNP [dm3] 2L_6036816_SNP [dm6]	G	A	5.189e^-5	0.827	START_GAINED mtm UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6389200	2R_6389200_SNP [dm3] 2R_10501695_SNP [dm6]	G	A	5.200e^-5	0.827	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	8638992	3L_8638992_SNP [dm3] 3L_8645892_SNP [dm6]	G	C	5.201e^-5	0.827	SPLICE_SITE_REGION CG13305 SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10174221	2L_10174221_SNP [dm3] 2L_10174221_SNP [dm6]	G	C	5.242e^-5	0.827	DOWNSTREAM CG13137 INTRON CG44153
3R	25535889	3R_25535889_SNP [dm3] 3R_29710167_SNP [dm6]	C	T	5.254e^-5	0.827	INTERGENIC
3L	12108502	3L_12108502_SNP [dm3] 3L_12115402_SNP [dm6]	A	G	5.272e^-5	0.827	UPSTREAM l_3_j2D3 INTERGENIC
3L	6486515	3L_6486515_SNP [dm3] 3L_6493415_SNP [dm6]	G	A	5.309e^-5	0.827	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19908337	2L_19908337_SNP [dm3] 2L_19908337_SNP [dm6]	G	T	5.586e^-5	0.827	INTRON sick
3R	8560543	3R_8560543_SNP [dm3] 3R_12734821_SNP [dm6]	G	C	5.600e^-5	0.827	INTERGENIC
2L	6036812	2L_6036812_SNP [dm3] 2L_6036812_SNP [dm6]	T	G	5.604e^-5	0.827	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16128320	2R_16128320_SNP [dm3] 2R_20240815_SNP [dm6]	G	A	5.689e^-5	0.827	INTRON Efhc1.2
3L	870962	3L_870962_SNP [dm3] 3L_870962_SNP [dm6]	C	T	5.736e^-5	0.827	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl
2L	18654553	2L_18654553_SNP [dm3] 2L_18654553_SNP [dm6]	C	G	5.875e^-5	0.827	INTRON MESR3	TF binding site mE1_TFBS_cnc
3L	17950359	3L_17950359_SNP [dm3] 3L_17957259_SNP [dm6]	T	C	5.942e^-5	0.827	INTRON Eip75B
2R	14665497	2R_14665497_SNP [dm3] 2R_18777992_SNP [dm6]	C	G	5.966e^-5	0.827	DOWNSTREAM CR43964 INTERGENIC
3R	22010173	3R_22010173_SNP [dm3] 3R_26184451_SNP [dm6]	C	T	5.971e^-5	0.827	UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26679244	3R_26679244_SNP [dm3] 3R_30853522_SNP [dm6]	T	C	6.019e^-5	0.827	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11439716	3R_11439716_SNP [dm3] 3R_15613994_SNP [dm6]	A	G	6.022e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	6.094e^-5	0.827	UPSTREAM CG33998 INTRON Hs3st-A
2L	9127683	2L_9127683_SNP [dm3] 2L_9127683_SNP [dm6]	A	T	6.209e^-5	0.827	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3L	9900343	3L_9900343_SNP [dm3] 3L_9907243_SNP [dm6]	C	T	6.236e^-5	0.827	UPSTREAM CG34356 INTERGENIC
X	16615883	X_16615883_SNP [dm3] X_16721850_SNP [dm6]	T	C	6.244e^-5	0.827	UPSTREAM CG34325 INTRON CG32572
3R	26682844	3R_26682844_SNP [dm3] 3R_30857122_SNP [dm6]	G	T	6.276e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16822806	X_16822806_SNP [dm3] X_16928773_SNP [dm6]	C	G	6.288e^-5	0.827	INTRON CG4928
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	6.369e^-5	0.827	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	6.369e^-5	0.827	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	6.369e^-5	0.827	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4090109	2L_4090109_INS [dm3] 2L_4090109_INS [dm6]	A	AGA	6.549e^-5	0.827	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5751724	3L_5751724_SNP [dm3] 3L_5758624_SNP [dm6]	A	T	6.551e^-5	0.827	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8644808	3L_8644808_SNP [dm3] 3L_8651708_SNP [dm6]	T	C	6.581e^-5	0.827	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26679254	3R_26679254_SNP [dm3] 3R_30853532_SNP [dm6]	C	T	6.665e^-5	0.827	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26679262	3R_26679262_SNP [dm3] 3R_30853540_SNP [dm6]	C	T	6.665e^-5	0.827	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17940675	3R_17940675_SNP [dm3] 3R_22114953_SNP [dm6]	A	T	6.694e^-5	0.827	SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3L	11336444	3L_11336444_INS [dm3] 3L_11343344_INS [dm6]	T	TGAGAATATTAATCTTT...	6.779e^-5	0.827	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	12521556	3L_12521556_SNP [dm3] 3L_12528456_SNP [dm6]	A	G	6.789e^-5	0.827	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17755476	3R_17755476_SNP [dm3] 3R_21929754_SNP [dm6]	A	T	6.812e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	18714307	2L_18714307_SNP [dm3] 2L_18714307_SNP [dm6]	G	A	6.841e^-5	0.827	UPSTREAM Irk3 DOWNSTREAM CG10348 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	20613124	2L_20613124_SNP [dm3] 2L_20613124_SNP [dm6]	T	A	6.847e^-5	0.827	INTRON CR44909
X	16615961	X_16615961_SNP [dm3] X_16721928_SNP [dm6]	A	G	6.847e^-5	0.827	UPSTREAM CG34325 INTRON CG32572
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	6.921e^-5	0.827	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	10626331	3L_10626331_SNP [dm3] 3L_10633231_SNP [dm6]	G	T	6.980e^-5	0.827	SYNONYMOUS_CODING hay INTRON CG34001
2L	10144621	2L_10144621_SNP [dm3] 2L_10144621_SNP [dm6]	T	C	7.199e^-5	0.827	UPSTREAM CG4839 INTRON CG44153
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	7.277e^-5	0.827	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	20345354	2L_20345354_SNP [dm3] 2L_20345354_SNP [dm6]	G	A	7.284e^-5	0.827	UTR_3_PRIME spir DOWNSTREAM spir INTRON spir	TF binding site mE1_TFBS_cad
3R	26678400	3R_26678400_SNP [dm3] 3R_30852678_SNP [dm6]	T	A	7.313e^-5	0.827	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19899048	2L_19899048_SNP [dm3] 2L_19899048_SNP [dm6]	A	C	7.390e^-5	0.827	INTRON sick
3L	8549937	3L_8549937_SNP [dm3] 3L_8556837_SNP [dm6]	C	T	7.515e^-5	0.827	INTRON rhea	TF binding site BDTNP1_TFBS_dl
2R	10863884	2R_10863884_INS [dm3] 2R_14976379_INS [dm6]	A	AGTA	7.648e^-5	0.827	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17755460	3R_17755460_SNP [dm3] 3R_21929738_SNP [dm6]	A	T	7.689e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	23700940	3R_23700940_INS [dm3] 3R_27875218_INS [dm6]	A	ATATGCATA	7.763e^-5	0.827	INTRON CG34353
X	22230353	X_22230353_SNP [dm3] X_22828517_SNP [dm6]	G	A	7.777e^-5	0.827	SYNONYMOUS_CODING fog	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16400115	3R_16400115_SNP [dm3] 3R_20574393_SNP [dm6]	A	T	7.783e^-5	0.827	UPSTREAM snoRNA:Psi18S-301 DOWNSTREAM TFAM INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	16128809	2R_16128809_SNP [dm3] 2R_20241304_SNP [dm6]	C	T	7.860e^-5	0.827	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
X	22229622	X_22229622_SNP [dm3] X_22827786_SNP [dm6]	T	A	7.870e^-5	0.827	NON_SYNONYMOUS_CODING fog
3L	3688764	3L_3688764_SNP [dm3] 3L_3688764_SNP [dm6]	A	T	7.891e^-5	0.827	UPSTREAM CR43484 INTERGENIC
2L	20135482	2L_20135482_SNP [dm3] 2L_20135482_SNP [dm6]	T	C	7.932e^-5	0.827	UPSTREAM CG10651 INTERGENIC
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	7.938e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	15337724	2R_15337724_SNP [dm3] 2R_19450219_SNP [dm6]	C	G	7.957e^-5	0.827	UPSTREAM betaTub56D INTRON betaTub56D	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	16400159	3R_16400159_SNP [dm3] 3R_20574437_SNP [dm6]	C	T	7.971e^-5	0.827	UPSTREAM snoRNA:Psi18S-301 DOWNSTREAM TFAM INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	13077214	3R_13077214_SNP [dm3] 3R_17251492_SNP [dm6]	A	T	7.984e^-5	0.827	INTRON beat-IIb
3L	5752808	3L_5752808_SNP [dm3] 3L_5759708_SNP [dm6]	A	G	7.996e^-5	0.827	NON_SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6760731	3L_6760731_SNP [dm3] 3L_6767631_SNP [dm6]	G	T	8.008e^-5	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	20389940	2L_20389940_SNP [dm3] 2L_20389940_SNP [dm6]	C	T	8.048e^-5	0.827	INTRON CG10947	TF binding site mE1_TFBS_inv
3R	6010542	3R_6010542_SNP [dm3] 3R_10184820_SNP [dm6]	A	C	8.069e^-5	0.827	INTRON CG12814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	10615771	3L_10615771_SNP [dm3] 3L_10622671_SNP [dm6]	G	A	8.173e^-5	0.827	DOWNSTREAM CG42521 INTERGENIC
2L	19890880	2L_19890880_SNP [dm3] 2L_19890880_SNP [dm6]	G	A	8.187e^-5	0.827	SYNONYMOUS_CODING CG10481 INTRON sick
2L	11877056	2L_11877056_SNP [dm3] 2L_11877056_SNP [dm6]	A	T	8.276e^-5	0.827	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20981220	3L_20981220_SNP [dm3] 3L_20988120_SNP [dm6]	C	T	8.292e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	19881855	2L_19881855_SNP [dm3] 2L_19881855_SNP [dm6]	A	G	8.295e^-5	0.827	INTRON sick
X	22229623	X_22229623_SNP [dm3] X_22827787_SNP [dm6]	C	A	8.333e^-5	0.827	STOP_GAINED fog
3L	6760698	3L_6760698_SNP [dm3] 3L_6767598_SNP [dm6]	T	G	8.528e^-5	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2L	19908307	2L_19908307_SNP [dm3] 2L_19908307_SNP [dm6]	C	G	8.598e^-5	0.827	INTRON sick
3R	17749973	3R_17749973_SNP [dm3] 3R_21924251_SNP [dm6]	A	G	8.664e^-5	0.827	INTERGENIC
2R	7511513	2R_7511513_SNP [dm3] 2R_11624008_SNP [dm6]	G	A	8.692e^-5	0.827	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16615910	X_16615910_SNP [dm3] X_16721877_SNP [dm6]	A	C	8.737e^-5	0.827	UPSTREAM CG34325 INTRON CG32572
2R	11875847	2R_11875847_SNP [dm3] 2R_15988342_SNP [dm6]	T	C	8.777e^-5	0.827	DOWNSTREAM CR45021 INTRON Strn-Mlck
2L	18486222	2L_18486222_DEL [dm3] 2L_18486222_DEL [dm6]	TTCCAAAAGATT...	T	8.787e^-5	0.827	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	16128299	2R_16128299_SNP [dm3] 2R_20240794_SNP [dm6]	C	A	8.789e^-5	0.827	INTRON Efhc1.2
2R	16128310	2R_16128310_SNP [dm3] 2R_20240805_SNP [dm6]	A	G	8.789e^-5	0.827	INTRON Efhc1.2
2R	16128316	2R_16128316_SNP [dm3] 2R_20240811_SNP [dm6]	T	A	8.789e^-5	0.827	INTRON Efhc1.2
2R	16128325	2R_16128325_SNP [dm3] 2R_20240820_SNP [dm6]	A	T	8.789e^-5	0.827	INTRON Efhc1.2
2R	9972412	2R_9972412_SNP [dm3] 2R_14084907_SNP [dm6]	C	T	8.887e^-5	0.827	INTRON Prosap	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	2612527	3L_2612527_SNP [dm3] 3L_2612527_SNP [dm6]	T	A	8.894e^-5	0.827	INTRON Pxn
2L	11877064	2L_11877064_SNP [dm3] 2L_11877064_SNP [dm6]	C	A	8.972e^-5	0.827	INTRON Pde1c	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6800121	2L_6800121_SNP [dm3] 2L_6800121_SNP [dm6]	A	G	8.977e^-5	0.827	DOWNSTREAM CR43610 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
3L	20901587	3L_20901587_SNP [dm3] 3L_20908487_SNP [dm6]	C	T	8.977e^-5	0.827	INTERGENIC	TF binding site mE1_TFBS_inv
2L	20136365	2L_20136365_SNP [dm3] 2L_20136365_SNP [dm6]	C	A	9.006e^-5	0.827	INTERGENIC
3R	11869950	3R_11869950_SNP [dm3] 3R_16044228_SNP [dm6]	G	A	9.050e^-5	0.827	DOWNSTREAM CG10407 INTRON CG10264
3R	16630220	3R_16630220_SNP [dm3] 3R_20804498_SNP [dm6]	C	T	9.087e^-5	0.827	INTRON Syp
3L	2157925	3L_2157925_SNP [dm3] 3L_2157925_SNP [dm6]	A	T	9.153e^-5	0.827	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16491501	2R_16491501_SNP [dm3] 2R_20603996_SNP [dm6]	T	C	9.222e^-5	0.827	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19908324	2L_19908324_SNP [dm3] 2L_19908324_SNP [dm6]	A	T	9.226e^-5	0.827	INTRON sick
3L	6499976	3L_6499976_SNP [dm3] 3L_6506876_SNP [dm6]	C	T	9.283e^-5	0.827	INTRON sfl
2L	19881731	2L_19881731_SNP [dm3] 2L_19881731_SNP [dm6]	G	A	9.573e^-5	0.827	INTRON sick
2L	11889672	2L_11889672_SNP [dm3] 2L_11889672_SNP [dm6]	T	C	9.587e^-5	0.827	INTRON Pde1c
2L	20376863	2L_20376863_SNP [dm3] 2L_20376863_SNP [dm6]	G	A	9.631e^-5	0.827	DOWNSTREAM CG16798 INTERGENIC
2L	6800470	2L_6800470_SNP [dm3] 2L_6800470_SNP [dm6]	A	T	9.657e^-5	0.827	NON_SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	9.685e^-5	0.827	UPSTREAM Mlp60A INTERGENIC
3R	20197347	3R_20197347_SNP [dm3] 3R_24371625_SNP [dm6]	C	T	9.710e^-5	0.827	DOWNSTREAM CG13614 INTRON CG17782
3L	20661845	3L_20661845_SNP [dm3] 3L_20668745_SNP [dm6]	A	T	9.781e^-5	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6486530	3L_6486530_SNP [dm3] 3L_6493430_SNP [dm6]	T	C	9.992e^-5	0.827	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14497037	2R_14497037_SNP [dm3] 2R_18609532_SNP [dm6]	T	A	1.003e^-4	0.827	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6496954	3L_6496954_SNP [dm3] 3L_6503854_SNP [dm6]	C	T	1.005e^-4	0.827	INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	4176822	3L_4176822_SNP [dm3] 3L_4176822_SNP [dm6]	C	T	1.006e^-4	0.827	INTRON CG18675 & 1 other
3L	4176830	3L_4176830_SNP [dm3] 3L_4176830_SNP [dm6]	G	C	1.006e^-4	0.827	INTRON CG18675 & 1 other
3R	20197946	3R_20197946_SNP [dm3] 3R_24372224_SNP [dm6]	C	G	1.006e^-4	0.827	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19651616	2L_19651616_SNP [dm3] 2L_19651616_SNP [dm6]	A	G	1.008e^-4	0.827	INTRON Lar
3R	26706243	3R_26706243_DEL [dm3] 3R_30880521_DEL [dm6]	AGTTTGGGG	A	1.018e^-4	0.827	INTRON CG12071
3R	18184638	3R_18184638_SNP [dm3] 3R_22358916_SNP [dm6]	T	C	1.024e^-4	0.827	INTRON Sar1
3R	18184639	3R_18184639_DEL [dm3] 3R_22358917_DEL [dm6]	ATCATCTTATCT...	A	1.024e^-4	0.827	INTRON Sar1
2L	19799196	2L_19799196_SNP [dm3] 2L_19799196_SNP [dm6]	G	A	1.033e^-4	0.827	INTRON sick
3L	11011145	3L_11011145_SNP [dm3] 3L_11018045_SNP [dm6]	G	T	1.037e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	20393332	3R_20393332_SNP [dm3] 3R_24567610_SNP [dm6]	T	C	1.042e^-4	0.827	INTRON CG13624	TF binding site mE1_TFBS_cnc
3R	15829665	3R_15829665_SNP [dm3] 3R_20003943_SNP [dm6]	C	T	1.044e^-4	0.827	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3R	19097307	3R_19097307_SNP [dm3] 3R_23271585_SNP [dm6]	G	A	1.045e^-4	0.827	INTRON orb
X	6192049	X_6192049_SNP [dm3] X_6298016_SNP [dm6]	A	G	1.058e^-4	0.827	SYNONYMOUS_CODING CG3815	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16184829	3L_16184829_SNP [dm3] 3L_16191729_SNP [dm6]	A	G	1.062e^-4	0.827	INTERGENIC
X	22234654	X_22234654_INS [dm3] X_22832818_INS [dm6]	A	ATCTGCGTT	1.063e^-4	0.827	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	22234658	X_22234658_DEL [dm3] X_22832822_DEL [dm6]	CAGA	T	1.063e^-4	0.827	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12310020	2R_12310020_SNP [dm3] 2R_16422515_SNP [dm6]	C	T	1.063e^-4	0.827	INTRON Sema-2b
3L	6500516	3L_6500516_SNP [dm3] 3L_6507416_SNP [dm6]	G	A	1.063e^-4	0.827	INTRON sfl
2L	15134754	2L_15134754_SNP [dm3] 2L_15134754_SNP [dm6]	G	A	1.072e^-4	0.827	INTERGENIC
2R	20365546	2R_20365546_SNP [dm3] 2R_24478023_SNP [dm6]	T	G	1.077e^-4	0.827	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5751707	3L_5751707_SNP [dm3] 3L_5758607_SNP [dm6]	A	C	1.081e^-4	0.827	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6503375	3L_6503375_SNP [dm3] 3L_6510275_SNP [dm6]	G	T	1.084e^-4	0.827	INTRON sfl
2L	20135409	2L_20135409_SNP [dm3] 2L_20135409_SNP [dm6]	T	A	1.086e^-4	0.827	UPSTREAM CG10651 INTERGENIC
2L	20371114	2L_20371114_SNP [dm3] 2L_20371114_SNP [dm6]	G	T	1.086e^-4	0.827	INTERGENIC
X	20867976	X_20867976_SNP [dm3] X_20996949_SNP [dm6]	A	T	1.091e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6504236	3L_6504236_SNP [dm3] 3L_6511136_SNP [dm6]	G	C	1.091e^-4	0.827	INTRON sfl
X	17244087	X_17244087_SNP [dm3] X_17350054_SNP [dm6]	G	A	1.098e^-4	0.827	INTERGENIC
2L	15083920	2L_15083920_SNP [dm3] 2L_15083920_SNP [dm6]	A	C	1.107e^-4	0.827	INTRON CG15270
3R	26716469	3R_26716469_SNP [dm3] 3R_30890747_SNP [dm6]	A	G	1.114e^-4	0.827	INTERGENIC
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	1.117e^-4	0.827	INTRON sfl
2L	9779182	2L_9779182_INS [dm3] 2L_9779182_INS [dm6]	T	AAA	1.118e^-4	0.827	INTERGENIC
X	22233314	X_22233314_DEL [dm3] X_22831478_DEL [dm6]	CTTCC	C	1.130e^-4	0.827	UPSTREAM CG42346 INTRON fog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_inv
X	21867110	X_21867110_SNP [dm3] X_22465274_SNP [dm6]	A	G	1.139e^-4	0.827	NON_SYNONYMOUS_CODING CG14619 INTRON CG14619
2L	7437486	2L_7437486_SNP [dm3] 2L_7437486_SNP [dm6]	C	G	1.142e^-4	0.827	UPSTREAM CG5973 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6486323	3L_6486323_SNP [dm3] 3L_6493223_SNP [dm6]	C	T	1.143e^-4	0.827	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
X	22227028	X_22227028_SNP [dm3] X_22825192_SNP [dm6]	C	A	1.147e^-4	0.827	UTR_3_PRIME fog DOWNSTREAM fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	11869555	3R_11869555_SNP [dm3] 3R_16043833_SNP [dm6]	A	T	1.148e^-4	0.827	DOWNSTREAM CG10407 INTRON CG10264
2R	11735188	2R_11735188_DEL [dm3] 2R_15847683_DEL [dm6]	GG	G	1.149e^-4	0.827	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20392904	2L_20392904_SNP [dm3] 2L_20392904_SNP [dm6]	T	C	1.153e^-4	0.827	INTRON CG10947
2R	16128327	2R_16128327_SNP [dm3] 2R_20240822_SNP [dm6]	T	C	1.155e^-4	0.827	INTRON Efhc1.2
X	2169556	X_2169556_SNP [dm3] X_2275523_SNP [dm6]	G	A	1.168e^-4	0.827	UPSTREAM CG2918 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
X	21329497	X_21329497_DEL [dm3] X_21458470_DEL [dm6]	GAAGCAAG	G	1.174e^-4	0.827	UPSTREAM CG42343 INTERGENIC
3L	11026860	3L_11026860_SNP [dm3] 3L_11033760_SNP [dm6]	C	A	1.176e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19889536	2L_19889536_SNP [dm3] 2L_19889536_SNP [dm6]	T	C	1.180e^-4	0.827	DOWNSTREAM CG10481 INTRON sick
2L	19879742	2L_19879742_INS [dm3] 2L_19879742_INS [dm6]	A	AT	1.185e^-4	0.827	INTRON sick
2L	1642528	2L_1642528_SNP [dm3] 2L_1642528_SNP [dm6]	A	T	1.190e^-4	0.827	INTERGENIC
3L	11026843	3L_11026843_SNP [dm3] 3L_11033743_SNP [dm6]	C	T	1.200e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	1.200e^-4	0.827	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6746874	2L_6746874_SNP [dm3] 2L_6746874_SNP [dm6]	C	A	1.201e^-4	0.827	DOWNSTREAM CG44271 INTRON CG11221
2L	4090272	2L_4090272_SNP [dm3] 2L_4090272_SNP [dm6]	A	G	1.202e^-4	0.827	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20135541	2L_20135541_SNP [dm3] 2L_20135541_SNP [dm6]	A	C	1.204e^-4	0.827	UPSTREAM CG10651 INTERGENIC
3L	11026857	3L_11026857_SNP [dm3] 3L_11033757_SNP [dm6]	A	G	1.208e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad
X	16615927	X_16615927_SNP [dm3] X_16721894_SNP [dm6]	T	A	1.210e^-4	0.827	UPSTREAM CG34325 INTRON CG32572
2L	9127690	2L_9127690_SNP [dm3] 2L_9127690_SNP [dm6]	T	C	1.217e^-4	0.827	INTRON CG32982	TF binding site BDTNP1_TFBS_dl
3L	4606768	3L_4606768_INS [dm3] 3L_4606768_INS [dm6]	C	CGTC	1.218e^-4	0.827	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26713363	3R_26713363_SNP [dm3] 3R_30887641_SNP [dm6]	G	T	1.226e^-4	0.827	INTRON Sap-r
3R	19097335	3R_19097335_SNP [dm3] 3R_23271613_SNP [dm6]	T	A	1.227e^-4	0.827	INTRON orb
3R	12109357	3R_12109357_SNP [dm3] 3R_16283635_SNP [dm6]	G	C	1.229e^-4	0.827	INTRON gish
X	16615912	X_16615912_SNP [dm3] X_16721879_SNP [dm6]	A	T	1.230e^-4	0.827	UPSTREAM CG34325 INTRON CG32572
X	16823305	X_16823305_SNP [dm3] X_16929272_SNP [dm6]	T	A	1.230e^-4	0.827	INTRON CG4928
2L	6738690	2L_6738690_SNP [dm3] 2L_6738690_SNP [dm6]	T	C	1.233e^-4	0.827	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16128290	2R_16128290_SNP [dm3] 2R_20240785_SNP [dm6]	T	A	1.234e^-4	0.827	INTRON Efhc1.2
3L	14034232	3L_14034232_SNP [dm3] 3L_14041132_SNP [dm6]	T	C	1.246e^-4	0.827	INTRON Hsc70Cb
3L	8610860	3L_8610860_SNP [dm3] 3L_8617760_SNP [dm6]	C	T	1.248e^-4	0.827	SYNONYMOUS_CODING S-Lap1 DOWNSTREAM CG6282
2R	19706227	2R_19706227_SNP [dm3] 2R_23818704_SNP [dm6]	T	C	1.248e^-4	0.827	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	10846870	3L_10846870_SNP [dm3] 3L_10853770_SNP [dm6]	C	G	1.252e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	3779323	2R_3779323_INS [dm3] 2R_7891818_INS [dm6]	G	GAATGAACGTCTGCG...	1.253e^-4	0.827	INTRON CG30377
3R	17750276	3R_17750276_SNP [dm3] 3R_21924554_SNP [dm6]	C	T	1.261e^-4	0.827	INTERGENIC
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	1.265e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	20041195	2L_20041195_SNP [dm3] 2L_20041195_SNP [dm6]	T	C	1.265e^-4	0.827	INTRON sNPF
2L	13744446	2L_13744446_SNP [dm3] 2L_13744446_SNP [dm6]	T	G	1.283e^-4	0.827	INTERGENIC
2R	7182193	2R_7182193_SNP [dm3] 2R_11294688_SNP [dm6]	T	G	1.284e^-4	0.827	SYNONYMOUS_CODING CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	1.284e^-4	0.827	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17223207	2R_17223207_SNP [dm3] 2R_21335702_SNP [dm6]	A	T	1.289e^-4	0.827	SYNONYMOUS_CODING dom DOWNSTREAM snoRNA:Me28S-G2596 & 1 other INTRON dom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16213468	2L_16213468_SNP [dm3] 2L_16213468_SNP [dm6]	T	C	1.289e^-4	0.827	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20384884	2L_20384884_DEL [dm3] 2L_20384884_DEL [dm6]	GGGACTCTACTCATTTTTAG...	G	1.295e^-4	0.827	DOWNSTREAM CG10947 INTERGENIC
X	16710748	X_16710748_SNP [dm3] X_16816715_SNP [dm6]	C	T	1.299e^-4	0.827	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	26712308	3R_26712308_SNP [dm3] 3R_30886586_SNP [dm6]	G	T	1.300e^-4	0.827	INTRON Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	20613111	2L_20613111_DEL [dm3] 2L_20613111_DEL [dm6]	AGCAAAAGAG	T	1.309e^-4	0.827	INTRON CR44909
X	16615889	X_16615889_SNP [dm3] X_16721856_SNP [dm6]	T	A	1.310e^-4	0.827	UPSTREAM CG34325 INTRON CG32572
3R	19097268	3R_19097268_SNP [dm3] 3R_23271546_SNP [dm6]	C	T	1.311e^-4	0.827	INTRON orb
3R	17765056	3R_17765056_SNP [dm3] 3R_21939334_SNP [dm6]	C	T	1.320e^-4	0.827	INTERGENIC
2L	11889742	2L_11889742_SNP [dm3] 2L_11889742_SNP [dm6]	A	C	1.323e^-4	0.827	INTRON Pde1c
3R	24331341	3R_24331341_SNP [dm3] 3R_28505619_SNP [dm6]	C	T	1.328e^-4	0.827	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	26692725	3R_26692725_DEL [dm3] 3R_30867003_DEL [dm6]	ATTTTCCTTTT...	A	1.333e^-4	0.827	UPSTREAM Cpr100A INTERGENIC
3L	10876032	3L_10876032_SNP [dm3] 3L_10882932_SNP [dm6]	T	C	1.337e^-4	0.827	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	21541426	3L_21541426_SNP [dm3] 3L_21548326_SNP [dm6]	A	G	1.337e^-4	0.827	INTRON Wnk
3R	12109214	3R_12109214_SNP [dm3] 3R_16283492_SNP [dm6]	A	G	1.339e^-4	0.827	INTRON gish
X	5891739	X_5891739_SNP [dm3] X_5997706_SNP [dm6]	T	C	1.343e^-4	0.827	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19971485	2R_19971485_SNP [dm3] 2R_24083962_SNP [dm6]	C	T	1.347e^-4	0.827	SYNONYMOUS_CODING CG16786
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	1.348e^-4	0.827	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16128295	2R_16128295_SNP [dm3] 2R_20240790_SNP [dm6]	C	T	1.364e^-4	0.827	INTRON Efhc1.2
2R	19716887	2R_19716887_SNP [dm3] 2R_23829364_SNP [dm6]	A	T	1.364e^-4	0.827	INTRON CG5549
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	1.366e^-4	0.827	INTRON gish
2R	12665592	2R_12665592_DEL [dm3] 2R_16778087_DEL [dm6]	CGGA	G	1.371e^-4	0.827	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12178027	3L_12178027_SNP [dm3] 3L_12184927_SNP [dm6]	T	C	1.377e^-4	0.827	UPSTREAM CG6910 INTERGENIC
3L	14034173	3L_14034173_SNP [dm3] 3L_14041073_SNP [dm6]	A	G	1.380e^-4	0.827	INTRON Hsc70Cb
3L	14226022	3L_14226022_SNP [dm3] 3L_14232922_SNP [dm6]	A	T	1.381e^-4	0.827	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	1.382e^-4	0.827	INTRON gish
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	1.391e^-4	0.827	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24045411	3R_24045411_SNP [dm3] 3R_28219689_SNP [dm6]	G	A	1.396e^-4	0.827	INTRON CG34354
X	20858664	X_20858664_SNP [dm3] X_20987637_SNP [dm6]	A	G	1.414e^-4	0.827	INTERGENIC
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	1.422e^-4	0.827	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
2L	1721660	2L_1721660_SNP [dm3] 2L_1721660_SNP [dm6]	C	A	1.429e^-4	0.827	INTRON Rim2
3L	23117514	3L_23117514_SNP [dm3] 3L_23124414_SNP [dm6]	T	A	1.435e^-4	0.827	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	19325050	2L_19325050_DEL [dm3] 2L_19325050_DEL [dm6]	AT	A	1.436e^-4	0.827	EXON CR45700	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20197953	3R_20197953_SNP [dm3] 3R_24372231_SNP [dm6]	T	A	1.437e^-4	0.827	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20197965	3R_20197965_INS [dm3] 3R_24372243_INS [dm6]	A	ACAG	1.437e^-4	0.827	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19874110	2L_19874110_SNP [dm3] 2L_19874110_SNP [dm6]	T	C	1.441e^-4	0.827	INTRON sick
3L	1560975	3L_1560975_SNP [dm3] 3L_1560975_SNP [dm6]	G	T	1.442e^-4	0.827	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
X	16829807	X_16829807_SNP [dm3] X_16935774_SNP [dm6]	G	T	1.442e^-4	0.827	INTRON CG4928
3L	6497225	3L_6497225_SNP [dm3] 3L_6504125_SNP [dm6]	T	A	1.447e^-4	0.827	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	16615892	X_16615892_SNP [dm3] X_16721859_SNP [dm6]	T	C	1.453e^-4	0.827	UPSTREAM CG34325 INTRON CG32572
X	17905961	X_17905961_SNP [dm3] X_18011928_SNP [dm6]	A	T	1.483e^-4	0.827	INTRON Sh
2L	9774657	2L_9774657_SNP [dm3] 2L_9774657_SNP [dm6]	T	C	1.485e^-4	0.827	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19097250	3R_19097250_SNP [dm3] 3R_23271528_SNP [dm6]	A	T	1.496e^-4	0.827	INTRON orb
3L	6488157	3L_6488157_SNP [dm3] 3L_6495057_SNP [dm6]	G	C	1.516e^-4	0.827	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9923796	3R_9923796_SNP [dm3] 3R_14098074_SNP [dm6]	A	T	1.516e^-4	0.827	UTR_5_PRIME CG9920
2R	11875776	2R_11875776_SNP [dm3] 2R_15988271_SNP [dm6]	G	A	1.518e^-4	0.827	DOWNSTREAM CR45021 INTRON Strn-Mlck
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	1.519e^-4	0.827	DOWNSTREAM CR43964 INTERGENIC
2R	16128364	2R_16128364_SNP [dm3] 2R_20240859_SNP [dm6]	T	A	1.523e^-4	0.827	INTRON Efhc1.2
3R	26650220	3R_26650220_SNP [dm3] 3R_30824498_SNP [dm6]	T	C	1.524e^-4	0.827	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
2R	17927692	2R_17927692_SNP [dm3] 2R_22040187_SNP [dm6]	G	A	1.529e^-4	0.827	UPSTREAM CG34370 INTERGENIC
2R	6155485	2R_6155485_SNP [dm3] 2R_10267980_SNP [dm6]	A	G	1.540e^-4	0.827	SYNONYMOUS_CODING CG12910	TF binding site mE1_TFBS_chinmo
2L	10147030	2L_10147030_SNP [dm3] 2L_10147030_SNP [dm6]	G	C	1.559e^-4	0.827	UTR_5_PRIME CG4839 INTRON CG44153	TF binding site mE1_TFBS_cad
2L	6738604	2L_6738604_SNP [dm3] 2L_6738604_SNP [dm6]	A	C	1.560e^-4	0.827	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3012155	3L_3012155_SNP [dm3] 3L_3012155_SNP [dm6]	T	C	1.560e^-4	0.827	DOWNSTREAM FMRFaR INTERGENIC
2R	14665516	2R_14665516_SNP [dm3] 2R_18778011_SNP [dm6]	A	T	1.565e^-4	0.827	DOWNSTREAM CR43964 INTERGENIC
3R	18855016	3R_18855016_SNP [dm3] 3R_23029294_SNP [dm6]	G	C	1.568e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs
3R	26692754	3R_26692754_SNP [dm3] 3R_30867032_SNP [dm6]	A	G	1.569e^-4	0.827	UPSTREAM Cpr100A INTERGENIC
3R	26705029	3R_26705029_SNP [dm3] 3R_30879307_SNP [dm6]	A	T	1.569e^-4	0.827	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26696911	3R_26696911_SNP [dm3] 3R_30871189_SNP [dm6]	G	T	1.572e^-4	0.827	NON_SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	11851881	2R_11851881_SNP [dm3] 2R_15964376_SNP [dm6]	G	A	1.572e^-4	0.827	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11853168	2R_11853168_SNP [dm3] 2R_15965663_SNP [dm6]	C	A	1.572e^-4	0.827	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15591375	X_15591375_SNP [dm3] X_15697342_SNP [dm6]	A	T	1.573e^-4	0.827	UPSTREAM CG8128 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	3693283	2L_3693283_SNP [dm3] 2L_3693283_SNP [dm6]	T	G	1.578e^-4	0.827	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3L	14781715	3L_14781715_SNP [dm3] 3L_14788615_SNP [dm6]	T	C	1.579e^-4	0.827	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26678426	3R_26678426_SNP [dm3] 3R_30852704_SNP [dm6]	C	A	1.587e^-4	0.827	INTRON tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4953470	2R_4953470_SNP [dm3] 2R_9065965_SNP [dm6]	C	A	1.588e^-4	0.827	INTRON ana	regulatory region REDfly_CRMs
2L	8693045	2L_8693045_SNP [dm3] 2L_8693045_SNP [dm6]	A	C	1.592e^-4	0.827	UPSTREAM Hnf4 INTRON Hnf4	TF binding site mE1_TFBS_cnc
2L	20136566	2L_20136566_SNP [dm3] 2L_20136566_SNP [dm6]	G	T	1.596e^-4	0.827	INTERGENIC
3R	26752749	3R_26752749_SNP [dm3] 3R_30927027_SNP [dm6]	G	C	1.597e^-4	0.827	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	22010133	3R_22010133_SNP [dm3] 3R_26184411_SNP [dm6]	A	T	1.598e^-4	0.827	SPLICE_SITE_REGION CG31323 UPSTREAM CG31086 INTRON CG31323	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	3862346	X_3862346_SNP [dm3] X_3968313_SNP [dm6]	G	A	1.600e^-4	0.827	UTR_5_PRIME CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	22231583	X_22231583_SNP [dm3] X_22829747_SNP [dm6]	G	T	1.604e^-4	0.827	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	14794338	3R_14794338_SNP [dm3] 3R_18968616_SNP [dm6]	C	T	1.604e^-4	0.827	INTRON CG42613 & 1 other
X	21359030	X_21359030_SNP [dm3] X_21488003_SNP [dm6]	A	G	1.604e^-4	0.827	INTERGENIC
X	17899650	X_17899650_SNP [dm3] X_18005617_SNP [dm6]	T	A	1.605e^-4	0.827	DOWNSTREAM CG12672 INTRON Sh
X	15012979	X_15012979_SNP [dm3] X_15118946_SNP [dm6]	G	C	1.611e^-4	0.827	INTERGENIC
2L	19895418	2L_19895418_SNP [dm3] 2L_19895418_SNP [dm6]	G	A	1.615e^-4	0.827	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
X	20407143	X_20407143_SNP [dm3] X_20536116_SNP [dm6]	C	G	1.618e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10876047	3L_10876047_SNP [dm3] 3L_10882947_SNP [dm6]	A	G	1.619e^-4	0.827	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	26701010	3R_26701010_DEL [dm3] 3R_30875288_DEL [dm6]	CACGATCCTC	C	1.620e^-4	0.827	CODON_DELETION CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10007851	X_10007851_SNP [dm3] X_10113818_SNP [dm6]	C	A	1.636e^-4	0.827	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11189125	X_11189125_SNP [dm3] X_11295092_SNP [dm6]	A	T	1.640e^-4	0.827	INTRON CG44422
3R	10915789	3R_10915789_SNP [dm3] 3R_15090067_SNP [dm6]	A	C	1.642e^-4	0.827	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	6488488	3L_6488488_SNP [dm3] 3L_6495388_SNP [dm6]	A	C	1.654e^-4	0.827	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	26675231	3R_26675231_SNP [dm3] 3R_30849509_SNP [dm6]	A	G	1.654e^-4	0.827	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_Kr
3R	15827804	3R_15827804_SNP [dm3] 3R_20002082_SNP [dm6]	G	T	1.659e^-4	0.827	INTRON Hs6st	TF binding site mE1_TFBS_cad
3R	14883430	3R_14883430_SNP [dm3] 3R_19057708_SNP [dm6]	G	T	1.660e^-4	0.827	INTRON cdi	TF binding site mE1_TFBS_chinmo
X	15591130	X_15591130_INS [dm3] X_15697097_INS [dm6]	T	TTTTCACCTTCCCAAGACAG...	1.667e^-4	0.827	UPSTREAM CG8128 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	5264285	3L_5264285_SNP [dm3] 3L_5271185_SNP [dm6]	C	T	1.669e^-4	0.827	INTRON shep
2L	19952699	2L_19952699_SNP [dm3] 2L_19952699_SNP [dm6]	A	T	1.671e^-4	0.827	INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
X	17212170	X_17212170_SNP [dm3] X_17318137_SNP [dm6]	A	G	1.673e^-4	0.827	INTRON B-H2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8890731	3L_8890731_SNP [dm3] 3L_8897631_SNP [dm6]	T	A	1.674e^-4	0.827	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3601181	X_3601181_SNP [dm3] X_3707148_SNP [dm6]	C	T	1.677e^-4	0.827	INTRON Rala
X	16822816	X_16822816_SNP [dm3] X_16928783_SNP [dm6]	T	G	1.679e^-4	0.827	INTRON CG4928
3L	6504633	3L_6504633_SNP [dm3] 3L_6511533_SNP [dm6]	T	G	1.688e^-4	0.827	INTRON sfl
3L	11916490	3L_11916490_SNP [dm3] 3L_11923390_SNP [dm6]	T	C	1.691e^-4	0.827	SYNONYMOUS_CODING CG5718 DOWNSTREAM CG11588 INTRON CG44837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19895668	2L_19895668_SNP [dm3] 2L_19895668_SNP [dm6]	C	T	1.691e^-4	0.827	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3L	22441459	3L_22441459_SNP [dm3] 3L_22448359_SNP [dm6]	A	G	1.692e^-4	0.827	INTERGENIC
2R	13816343	2R_13816343_SNP [dm3] 2R_17928838_SNP [dm6]	A	T	1.695e^-4	0.827	INTERGENIC
3R	15815751	3R_15815751_SNP [dm3] 3R_19990029_SNP [dm6]	A	G	1.709e^-4	0.828	INTRON Hs6st
3L	17950367	3L_17950367_SNP [dm3] 3L_17957267_SNP [dm6]	C	T	1.711e^-4	0.828	INTRON Eip75B
2L	19927816	2L_19927816_SNP [dm3] 2L_19927816_SNP [dm6]	T	A	1.713e^-4	0.828	INTRON sick
3R	24987246	3R_24987246_SNP [dm3] 3R_29161524_SNP [dm6]	T	C	1.720e^-4	0.828	SYNONYMOUS_CODING CG11897
3R	19713614	3R_19713614_SNP [dm3] 3R_23887892_SNP [dm6]	A	G	1.720e^-4	0.828	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3L	14226281	3L_14226281_SNP [dm3] 3L_14233181_SNP [dm6]	G	A	1.722e^-4	0.828	UTR_3_PRIME nuf UPSTREAM CG7924 DOWNSTREAM nuf
3L	14618651	3L_14618651_SNP [dm3] 3L_14625551_SNP [dm6]	T	C	1.737e^-4	0.832	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
X	4511094	X_4511094_SNP [dm3] X_4617061_SNP [dm6]	T	A	1.749e^-4	0.833	UPSTREAM peb INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17764903	3R_17764903_SNP [dm3] 3R_21939181_SNP [dm6]	T	A	1.751e^-4	0.833	INTERGENIC
3L	10626334	3L_10626334_SNP [dm3] 3L_10633234_SNP [dm6]	C	T	1.752e^-4	0.833	SYNONYMOUS_CODING hay INTRON CG34001
2L	1641473	2L_1641473_SNP [dm3] 2L_1641473_SNP [dm6]	C	T	1.770e^-4	0.834	INTERGENIC
2L	1641477	2L_1641477_SNP [dm3] 2L_1641477_SNP [dm6]	G	A	1.770e^-4	0.834	INTERGENIC
3L	5755934	3L_5755934_SNP [dm3] 3L_5762834_SNP [dm6]	A	C	1.782e^-4	0.834	DOWNSTREAM snoRNA:Psi18S-1397 & 2 others INTRON CG10576
3R	13724775	3R_13724775_SNP [dm3] 3R_17899053_SNP [dm6]	G	A	1.790e^-4	0.834	INTRON Rim
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	1.790e^-4	0.834	INTRON pgant2
X	22230634	X_22230634_SNP [dm3] X_22828798_SNP [dm6]	T	C	1.796e^-4	0.834	NON_SYNONYMOUS_CODING fog	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19509774	2R_19509774_SNP [dm3] 2R_23622251_SNP [dm6]	C	T	1.801e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10382562	2L_10382562_SNP [dm3] 2L_10382562_SNP [dm6]	C	T	1.802e^-4	0.834	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
3R	20197379	3R_20197379_SNP [dm3] 3R_24371657_SNP [dm6]	T	C	1.802e^-4	0.834	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG13614
3L	1560977	3L_1560977_SNP [dm3] 3L_1560977_SNP [dm6]	G	A	1.804e^-4	0.834	NON_SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
3L	6503754	3L_6503754_SNP [dm3] 3L_6510654_SNP [dm6]	C	T	1.811e^-4	0.834	INTRON sfl
3R	26692739	3R_26692739_SNP [dm3] 3R_30867017_SNP [dm6]	C	A	1.819e^-4	0.834	UPSTREAM Cpr100A INTERGENIC
3R	26710522	3R_26710522_SNP [dm3] 3R_30884800_SNP [dm6]	G	T	1.821e^-4	0.834	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10833851	3L_10833851_SNP [dm3] 3L_10840751_SNP [dm6]	G	A	1.823e^-4	0.834	INTERGENIC
3R	13851036	3R_13851036_SNP [dm3] 3R_18025314_SNP [dm6]	C	G	1.827e^-4	0.834	UTR_3_PRIME CG7794
3R	9924852	3R_9924852_INS [dm3] 3R_14099130_INS [dm6]	T	TA	1.838e^-4	0.834	DOWNSTREAM PK1-R INTERGENIC
2L	6396866	2L_6396866_SNP [dm3] 2L_6396866_SNP [dm6]	G	A	1.853e^-4	0.834	SYNONYMOUS_CODING CG42369 INTRON CG42368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26679592	3R_26679592_SNP [dm3] 3R_30853870_SNP [dm6]	C	A	1.866e^-4	0.834	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10218963	2R_10218963_SNP [dm3] 2R_14331458_SNP [dm6]	A	T	1.866e^-4	0.834	UPSTREAM Shroom INTRON Shroom	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2R	5143796	2R_5143796_SNP [dm3] 2R_9256291_SNP [dm6]	T	G	1.869e^-4	0.834	UTR_5_PRIME Pkn INTRON Pkn
3R	9250303	3R_9250303_SNP [dm3] 3R_13424581_SNP [dm6]	C	T	1.875e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14034177	3L_14034177_SNP [dm3] 3L_14041077_SNP [dm6]	C	G	1.875e^-4	0.834	INTRON Hsc70Cb
X	4478330	X_4478330_SNP [dm3] X_4584297_SNP [dm6]	G	T	1.884e^-4	0.834	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	12241782	3L_12241782_SNP [dm3] 3L_12248682_SNP [dm6]	A	G	1.885e^-4	0.834	INTRON app
X	22225542	X_22225542_SNP [dm3] X_22823706_SNP [dm6]	G	A	1.887e^-4	0.834	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
3L	17457206	3L_17457206_SNP [dm3] 3L_17464106_SNP [dm6]	G	C	1.887e^-4	0.834	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10999698	3L_10999698_DEL [dm3] 3L_11006598_DEL [dm6]	GT	G	1.896e^-4	0.834	INTRON klu
2L	20385797	2L_20385797_INS [dm3] 2L_20385797_INS [dm6]	G	GCATAA	1.899e^-4	0.834	UTR_3_PRIME CG10947 DOWNSTREAM CG10947
3R	17681875	3R_17681875_SNP [dm3] 3R_21856153_SNP [dm6]	A	T	1.901e^-4	0.834	UTR_5_PRIME glec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6866060	X_6866060_SNP [dm3] X_6972027_SNP [dm6]	C	T	1.905e^-4	0.834	SYNONYMOUS_CODING CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11889597	2L_11889597_SNP [dm3] 2L_11889597_SNP [dm6]	G	A	1.909e^-4	0.834	INTRON Pde1c
3L	8624622	3L_8624622_SNP [dm3] 3L_8631522_SNP [dm6]	C	T	1.910e^-4	0.834	UTR_3_PRIME Cdc6 INTRON Zasp66
3L	5778736	3L_5778736_SNP [dm3] 3L_5785636_SNP [dm6]	A	C	1.914e^-4	0.834	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
3R	17732321	3R_17732321_SNP [dm3] 3R_21906599_SNP [dm6]	T	C	1.917e^-4	0.834	UTR_3_PRIME CG6678
X	15731394	X_15731394_SNP [dm3] X_15837361_SNP [dm6]	T	C	1.934e^-4	0.834	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
2L	11889738	2L_11889738_SNP [dm3] 2L_11889738_SNP [dm6]	A	G	1.940e^-4	0.834	INTRON Pde1c
3L	1091744	3L_1091744_SNP [dm3] 3L_1091744_SNP [dm6]	A	G	1.945e^-4	0.834	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	26697927	3R_26697927_SNP [dm3] 3R_30872205_SNP [dm6]	G	C	1.946e^-4	0.834	SPLICE_SITE_REGION CG15545 INTRON CG15545	TF binding site mE1_TFBS_cad
3R	8631787	3R_8631787_DEL [dm3] 3R_12806065_DEL [dm6]	TGCT	T	1.951e^-4	0.834	INTERGENIC
3R	26705003	3R_26705003_SNP [dm3] 3R_30879281_SNP [dm6]	A	G	1.953e^-4	0.834	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17905870	X_17905870_SNP [dm3] X_18011837_SNP [dm6]	T	C	1.954e^-4	0.834	INTRON Sh
X	16615891	X_16615891_SNP [dm3] X_16721858_SNP [dm6]	A	G	1.954e^-4	0.834	UPSTREAM CG34325 INTRON CG32572
X	22229356	X_22229356_SNP [dm3] X_22827520_SNP [dm6]	A	T	1.955e^-4	0.834	NON_SYNONYMOUS_CODING fog
2L	19611465	2L_19611465_SNP [dm3] 2L_19611465_SNP [dm6]	G	T	1.957e^-4	0.834	UTR_5_PRIME Lar INTRON Lar
2R	5143520	2R_5143520_SNP [dm3] 2R_9256015_SNP [dm6]	T	A	1.963e^-4	0.834	SYNONYMOUS_CODING Pkn INTRON Pkn
2R	14665643	2R_14665643_MNP [dm3] 2R_18778138_MNP [dm6]	TTG	CCT	1.964e^-4	0.834	DOWNSTREAM CR43964 INTERGENIC
3L	6501408	3L_6501408_SNP [dm3] 3L_6508308_SNP [dm6]	G	A	1.969e^-4	0.834	INTRON sfl
3R	24978557	3R_24978557_SNP [dm3] 3R_29152835_SNP [dm6]	C	A	1.971e^-4	0.834	NON_SYNONYMOUS_CODING Slbp UPSTREAM Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	1.972e^-4	0.834	DOWNSTREAM CG34338 INTERGENIC
2L	9948836	2L_9948836_SNP [dm3] 2L_9948836_SNP [dm6]	T	A	1.981e^-4	0.835	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26704353	3R_26704353_SNP [dm3] 3R_30878631_SNP [dm6]	C	A	1.983e^-4	0.835	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	10901252	3R_10901252_SNP [dm3] 3R_15075530_SNP [dm6]	T	A	2.004e^-4	0.837	INTRON dpr9
X	15145606	X_15145606_SNP [dm3] X_15251573_SNP [dm6]	G	C	2.010e^-4	0.837	INTERGENIC
3L	1748494	3L_1748494_SNP [dm3] 3L_1748494_SNP [dm6]	G	A	2.015e^-4	0.837	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26710819	3R_26710819_SNP [dm3] 3R_30885097_SNP [dm6]	C	T	2.018e^-4	0.837	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26692742	3R_26692742_DEL [dm3] 3R_30867020_DEL [dm6]	CTCTT	C	2.021e^-4	0.837	UPSTREAM Cpr100A INTERGENIC
2R	12665602	2R_12665602_SNP [dm3] 2R_16778097_SNP [dm6]	A	G	2.030e^-4	0.837	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11845732	2R_11845732_SNP [dm3] 2R_15958227_SNP [dm6]	T	C	2.030e^-4	0.837	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14348406	X_14348406_SNP [dm3] X_14454373_SNP [dm6]	T	G	2.032e^-4	0.837	INTRON dpr8
2L	3693352	2L_3693352_SNP [dm3] 2L_3693352_SNP [dm6]	T	C	2.035e^-4	0.837	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
X	18884812	X_18884812_SNP [dm3] X_18990779_SNP [dm6]	C	G	2.036e^-4	0.837	INTRON CG43759	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7320730	2R_7320730_SNP [dm3] 2R_11433225_SNP [dm6]	G	A	2.037e^-4	0.837	EXON CR43771
3L	6497513	3L_6497513_SNP [dm3] 3L_6504413_SNP [dm6]	G	A	2.046e^-4	0.839	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19892544	2L_19892544_SNP [dm3] 2L_19892544_SNP [dm6]	A	T	2.055e^-4	0.84	UTR_5_PRIME CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16128314	2R_16128314_SNP [dm3] 2R_20240809_SNP [dm6]	C	T	2.066e^-4	0.84	INTRON Efhc1.2
3L	6497205	3L_6497205_SNP [dm3] 3L_6504105_SNP [dm6]	A	G	2.068e^-4	0.84	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	12128814	2L_12128814_SNP [dm3] 2L_12128814_SNP [dm6]	G	A	2.072e^-4	0.84	NON_SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8280486	2R_8280486_SNP [dm3] 2R_12392981_SNP [dm6]	C	T	2.074e^-4	0.84	UPSTREAM Or49a INTERGENIC
3L	21541425	3L_21541425_SNP [dm3] 3L_21548325_SNP [dm6]	T	A	2.079e^-4	0.84	INTRON Wnk
2L	12892589	2L_12892589_SNP [dm3] 2L_12892589_SNP [dm6]	G	C	2.079e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6220596	3R_6220596_SNP [dm3] 3R_10394874_SNP [dm6]	C	T	2.087e^-4	0.84	INTRON cwo
2L	1641557	2L_1641557_SNP [dm3] 2L_1641557_SNP [dm6]	A	G	2.089e^-4	0.84	INTERGENIC
2R	16129644	2R_16129644_SNP [dm3] 2R_20242139_SNP [dm6]	A	G	2.097e^-4	0.84	NON_SYNONYMOUS_CODING Efhc1.2 DOWNSTREAM CG11208	TF binding site mE1_TFBS_cad
2R	16491746	2R_16491746_SNP [dm3] 2R_20604241_SNP [dm6]	C	G	2.098e^-4	0.84	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8703881	3L_8703881_SNP [dm3] 3L_8710781_SNP [dm6]	C	A	2.113e^-4	0.84	INTERGENIC	regulatory region REDfly_CRMs
3R	26679085	3R_26679085_SNP [dm3] 3R_30853363_SNP [dm6]	C	T	2.114e^-4	0.84	SYNONYMOUS_CODING tll	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11845496	2R_11845496_SNP [dm3] 2R_15957991_SNP [dm6]	T	C	2.119e^-4	0.84	SPLICE_SITE_REGION Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26713366	3R_26713366_SNP [dm3] 3R_30887644_SNP [dm6]	G	A	2.124e^-4	0.84	INTRON Sap-r
X	22242287	X_22242287_SNP [dm3] X_22840451_SNP [dm6]	G	A	2.124e^-4	0.84	INTRON fog & 1 other
3R	16759880	3R_16759880_SNP [dm3] 3R_20934158_SNP [dm6]	T	C	2.129e^-4	0.84	INTRON CG31191
3R	26704331	3R_26704331_SNP [dm3] 3R_30878609_SNP [dm6]	A	G	2.129e^-4	0.84	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	3356614	3L_3356614_SNP [dm3] 3L_3356614_SNP [dm6]	T	C	2.140e^-4	0.84	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3R	24331301	3R_24331301_SNP [dm3] 3R_28505579_SNP [dm6]	A	T	2.141e^-4	0.84	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	2.142e^-4	0.84	INTRON Octbeta2R
3R	26670793	3R_26670793_SNP [dm3] 3R_30845071_SNP [dm6]	T	A	2.160e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	26692750	3R_26692750_SNP [dm3] 3R_30867028_SNP [dm6]	C	T	2.166e^-4	0.84	UPSTREAM Cpr100A INTERGENIC
2L	2706852	2L_2706852_SNP [dm3] 2L_2706852_SNP [dm6]	A	T	2.170e^-4	0.84	INTRON CG31690
3L	15022643	3L_15022643_SNP [dm3] 3L_15029543_SNP [dm6]	G	T	2.171e^-4	0.84	INTRON Sytbeta
3L	8645193	3L_8645193_SNP [dm3] 3L_8652093_SNP [dm6]	G	A	2.172e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_bab1
X	22225725	X_22225725_SNP [dm3] X_22823889_SNP [dm6]	C	T	2.177e^-4	0.84	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
X	16615913	X_16615913_SNP [dm3] X_16721880_SNP [dm6]	C	A	2.180e^-4	0.84	UPSTREAM CG34325 INTRON CG32572
3R	25399774	3R_25399774_SNP [dm3] 3R_29574052_SNP [dm6]	T	C	2.184e^-4	0.84	INTERGENIC
3L	18166736	3L_18166736_SNP [dm3] 3L_18173636_SNP [dm6]	G	C	2.188e^-4	0.84	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10020626	3L_10020626_SNP [dm3] 3L_10027526_SNP [dm6]	A	C	2.199e^-4	0.84	INTRON dpr6
3R	26378689	3R_26378689_SNP [dm3] 3R_30552967_SNP [dm6]	T	C	2.205e^-4	0.84	INTRON tmod
2L	20138039	2L_20138039_SNP [dm3] 2L_20138039_SNP [dm6]	A	G	2.205e^-4	0.84	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13019968	2R_13019968_SNP [dm3] 2R_17132463_SNP [dm6]	T	C	2.208e^-4	0.84	UPSTREAM CR45273 & 1 other INTERGENIC
3R	15915910	3R_15915910_SNP [dm3] 3R_20090188_SNP [dm6]	T	C	2.208e^-4	0.84	INTERGENIC
X	3798132	X_3798132_SNP [dm3] X_3904099_SNP [dm6]	G	C	2.214e^-4	0.84	NON_SYNONYMOUS_CODING CG42541
3L	20901651	3L_20901651_SNP [dm3] 3L_20908551_SNP [dm6]	A	G	2.223e^-4	0.84	INTERGENIC	TF binding site mE1_TFBS_inv
3L	12888102	3L_12888102_INS [dm3] 3L_12895002_INS [dm6]	G	GTCG	2.228e^-4	0.84	DOWNSTREAM CG14118 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17788141	2R_17788141_INS [dm3] 2R_21900636_INS [dm6]	A	ACA	2.229e^-4	0.84	INTRON Fili	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17767440	3R_17767440_SNP [dm3] 3R_21941718_SNP [dm6]	G	A	2.230e^-4	0.84	INTERGENIC
X	10503270	X_10503270_SNP [dm3] X_10609237_SNP [dm6]	T	A	2.235e^-4	0.84	INTRON CG43347
3L	10049630	3L_10049630_SNP [dm3] 3L_10056530_SNP [dm6]	T	C	2.238e^-4	0.84	INTRON dpr6
3L	11026862	3L_11026862_SNP [dm3] 3L_11033762_SNP [dm6]	G	T	2.258e^-4	0.842	INTERGENIC	TF binding site mE1_TFBS_cad
3R	2291779	3R_2291779_SNP [dm3] 3R_6466057_SNP [dm6]	T	A	2.259e^-4	0.842	INTERGENIC
3R	2291839	3R_2291839_SNP [dm3] 3R_6466117_SNP [dm6]	G	A	2.259e^-4	0.842	INTERGENIC
X	16829811	X_16829811_SNP [dm3] X_16935778_SNP [dm6]	C	A	2.260e^-4	0.842	INTRON CG4928
X	22234773	X_22234773_INS [dm3] X_22832937_INS [dm6]	C	CT	2.264e^-4	0.842	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18317660	2R_18317660_SNP [dm3] 2R_22430155_SNP [dm6]	C	A	2.268e^-4	0.842	DOWNSTREAM ppk12 INTERGENIC
2L	10117705	2L_10117705_SNP [dm3] 2L_10117705_SNP [dm6]	G	A	2.284e^-4	0.843	INTRON CG44153 & 1 other
3R	15815833	3R_15815833_SNP [dm3] 3R_19990111_SNP [dm6]	A	G	2.290e^-4	0.843	INTRON Hs6st
3L	2157923	3L_2157923_SNP [dm3] 3L_2157923_SNP [dm6]	G	A	2.291e^-4	0.843	INTRON CG15822	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15731365	X_15731365_SNP [dm3] X_15837332_SNP [dm6]	T	C	2.292e^-4	0.843	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
2R	6955275	2R_6955275_SNP [dm3] 2R_11067770_SNP [dm6]	T	A	2.298e^-4	0.843	INTRON luna
2L	15637434	2L_15637434_SNP [dm3] 2L_15637434_SNP [dm6]	G	T	2.299e^-4	0.843	INTERGENIC
X	21364491	X_21364491_SNP [dm3] X_21493464_SNP [dm6]	T	C	2.323e^-4	0.85	INTERGENIC
2L	3614425	2L_3614425_SNP [dm3] 2L_3614425_SNP [dm6]	G	A	2.332e^-4	0.852	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	15551723	3R_15551723_SNP [dm3] 3R_19726001_SNP [dm6]	T	G	2.343e^-4	0.854	INTERGENIC
3L	13128506	3L_13128506_SNP [dm3] 3L_13135406_SNP [dm6]	G	C	2.352e^-4	0.855	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20935617	2L_20935617_SNP [dm3] 2L_20935617_SNP [dm6]	G	T	2.354e^-4	0.855	INTERGENIC
3L	11336512	3L_11336512_SNP [dm3] 3L_11343412_SNP [dm6]	G	C	2.360e^-4	0.855	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	15799822	3R_15799822_SNP [dm3] 3R_19974100_SNP [dm6]	C	A	2.375e^-4	0.858	NON_SYNONYMOUS_CODING CG31213 INTRON Hs6st
X	22234775	X_22234775_SNP [dm3] X_22832939_SNP [dm6]	A	C	2.376e^-4	0.858	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6285094	3R_6285094_SNP [dm3] 3R_10459372_SNP [dm6]	G	A	2.390e^-4	0.861	INTERGENIC
X	21464606	X_21464606_SNP [dm3] X_21593579_SNP [dm6]	A	C	2.411e^-4	0.867	INTERGENIC
X	2168524	X_2168524_SNP [dm3] X_2274491_SNP [dm6]	C	T	2.420e^-4	0.867	INTRON CG2918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	19925302	2L_19925302_SNP [dm3] 2L_19925302_SNP [dm6]	C	A	2.424e^-4	0.867	INTRON sick	TF binding site mE1_TFBS_chinmo
3L	8634373	3L_8634373_SNP [dm3] 3L_8641273_SNP [dm6]	T	A	2.428e^-4	0.867	INTRON Cpr66D
X	14689487	X_14689487_SNP [dm3] X_14795454_SNP [dm6]	T	C	2.431e^-4	0.867	SYNONYMOUS_CODING rut
3R	26692759	3R_26692759_DEL [dm3] 3R_30867037_DEL [dm6]	TGCCATT	T	2.435e^-4	0.867	UPSTREAM Cpr100A INTERGENIC
X	3458592	X_3458592_SNP [dm3] X_3564559_SNP [dm6]	A	G	2.451e^-4	0.87	INTRON CG32791 & 1 other
3L	13485015	3L_13485015_SNP [dm3] 3L_13491915_SNP [dm6]	T	C	2.451e^-4	0.87	INTRON Tgi
2L	16572914	2L_16572914_SNP [dm3] 2L_16572914_SNP [dm6]	T	C	2.462e^-4	0.872	INTRON CG42389
2L	12540050	2L_12540050_SNP [dm3] 2L_12540050_SNP [dm6]	C	A	2.469e^-4	0.873	UTR_5_PRIME bun INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6255260	X_6255260_SNP [dm3] X_6361227_SNP [dm6]	A	C	2.477e^-4	0.874	UTR_3_PRIME kdn DOWNSTREAM swaPsi	TF binding site BDTNP1_TFBS_dl
2L	6738682	2L_6738682_SNP [dm3] 2L_6738682_SNP [dm6]	A	G	2.485e^-4	0.874	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10174220	2L_10174220_SNP [dm3] 2L_10174220_SNP [dm6]	C	T	2.491e^-4	0.874	DOWNSTREAM CG13137 INTRON CG44153
3R	17113874	3R_17113874_SNP [dm3] 3R_21288152_SNP [dm6]	C	T	2.495e^-4	0.874	INTRON SIFaR	TF binding site BDTNP1_TFBS_twi
2L	20391880	2L_20391880_SNP [dm3] 2L_20391880_SNP [dm6]	T	A	2.498e^-4	0.874	INTRON CG10947
3L	8703836	3L_8703836_SNP [dm3] 3L_8710736_SNP [dm6]	T	G	2.500e^-4	0.874	INTERGENIC	regulatory region REDfly_CRMs
X	21337143	X_21337143_SNP [dm3] X_21466116_SNP [dm6]	G	A	2.508e^-4	0.875	INTERGENIC
3R	18138135	3R_18138135_SNP [dm3] 3R_22312413_SNP [dm6]	C	A	2.512e^-4	0.875	INTRON CG34377
2L	12892570	2L_12892570_SNP [dm3] 2L_12892570_SNP [dm6]	T	C	2.518e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17905954	X_17905954_SNP [dm3] X_18011921_SNP [dm6]	A	T	2.522e^-4	0.875	INTRON Sh
2R	5886773	2R_5886773_SNP [dm3] 2R_9999268_SNP [dm6]	T	C	2.541e^-4	0.875	INTRON Pka-R2
3L	8890941	3L_8890941_SNP [dm3] 3L_8897841_SNP [dm6]	C	T	2.542e^-4	0.875	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11889368	2L_11889368_SNP [dm3] 2L_11889368_SNP [dm6]	A	G	2.549e^-4	0.875	INTRON Pde1c
3L	10851159	3L_10851159_SNP [dm3] 3L_10858059_SNP [dm6]	T	A	2.553e^-4	0.875	UTR_5_PRIME tna UPSTREAM tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2L	20424139	2L_20424139_SNP [dm3] 2L_20424139_SNP [dm6]	T	A	2.556e^-4	0.875	INTRON CG15130	TF binding site mE1_TFBS_cad
3L	15727552	3L_15727552_SNP [dm3] 3L_15734452_SNP [dm6]	G	A	2.557e^-4	0.875	INTERGENIC
3L	15727553	3L_15727553_SNP [dm3] 3L_15734453_SNP [dm6]	A	T	2.557e^-4	0.875	INTERGENIC
3R	20480787	3R_20480787_SNP [dm3] 3R_24655065_SNP [dm6]	T	C	2.562e^-4	0.875	UPSTREAM CG6695 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
X	22230835	X_22230835_SNP [dm3] X_22828999_SNP [dm6]	G	T	2.574e^-4	0.875	NON_SYNONYMOUS_CODING fog	TF binding site mE1_TFBS_chinmo
X	17243977	X_17243977_SNP [dm3] X_17349944_SNP [dm6]	A	G	2.589e^-4	0.875	INTERGENIC
2R	15152033	2R_15152033_SNP [dm3] 2R_19264528_SNP [dm6]	G	A	2.594e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19318626	2L_19318626_SNP [dm3] 2L_19318626_SNP [dm6]	T	C	2.594e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	8624585	3L_8624585_SNP [dm3] 3L_8631485_SNP [dm6]	C	T	2.595e^-4	0.875	DOWNSTREAM Cdc6 INTRON Zasp66
3R	21331106	3R_21331106_SNP [dm3] 3R_25505384_SNP [dm6]	T	C	2.599e^-4	0.875	SYNONYMOUS_CODING CG5107 UPSTREAM CG5111 DOWNSTREAM CR45651
3L	3416470	3L_3416470_DEL [dm3] 3L_3416470_DEL [dm6]	AATTTATTTCC...	A	2.604e^-4	0.875	INTRON sty
X	19923296	X_19923296_INS [dm3] X_20029263_INS [dm6]	C	CC	2.617e^-4	0.875	INTRON Dop2R
X	7978687	X_7978687_SNP [dm3] X_8084654_SNP [dm6]	G	C	2.617e^-4	0.875	INTRON CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16513906	2R_16513906_SNP [dm3] 2R_20626401_SNP [dm6]	T	A	2.622e^-4	0.875	SYNONYMOUS_CODING CG16742
2R	12309942	2R_12309942_SNP [dm3] 2R_16422437_SNP [dm6]	C	T	2.630e^-4	0.875	INTRON Sema-2b
3L	10628637	3L_10628637_SNP [dm3] 3L_10635537_SNP [dm6]	A	G	2.630e^-4	0.875	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3R	26713310	3R_26713310_SNP [dm3] 3R_30887588_SNP [dm6]	A	C	2.634e^-4	0.875	INTRON Sap-r
2R	19727517	2R_19727517_SNP [dm3] 2R_23839994_SNP [dm6]	T	C	2.649e^-4	0.875	UPSTREAM CR44805 DOWNSTREAM CG5549 EXON snoRNA:Psi18S-176	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21461363	X_21461363_SNP [dm3] X_21590336_SNP [dm6]	C	G	2.657e^-4	0.875	INTERGENIC
X	4375870	X_4375870_SNP [dm3] X_4481837_SNP [dm6]	T	C	2.661e^-4	0.875	INTRON CR32773 & 1 other
3R	15469687	3R_15469687_SNP [dm3] 3R_19643965_SNP [dm6]	C	A	2.667e^-4	0.875	INTRON Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15551743	3R_15551743_SNP [dm3] 3R_19726021_SNP [dm6]	T	A	2.667e^-4	0.875	INTERGENIC
3L	19857731	3L_19857731_SNP [dm3] 3L_19864631_SNP [dm6]	A	T	2.668e^-4	0.875	INTERGENIC	transposable element FlyBase
2L	19927502	2L_19927502_SNP [dm3] 2L_19927502_SNP [dm6]	G	T	2.690e^-4	0.875	INTRON sick
X	10963699	X_10963699_SNP [dm3] X_11069666_SNP [dm6]	G	A	2.692e^-4	0.875	INTERGENIC
2L	20464523	2L_20464523_SNP [dm3] 2L_20464523_SNP [dm6]	A	T	2.692e^-4	0.875	EXON CR44980	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10382556	2L_10382556_SNP [dm3] 2L_10382556_SNP [dm6]	T	G	2.697e^-4	0.875	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
2R	16168198	2R_16168198_DEL [dm3] 2R_20280693_DEL [dm6]	AAAAT	A	2.713e^-4	0.875	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3R	10179369	3R_10179369_SNP [dm3] 3R_14353647_SNP [dm6]	G	A	2.718e^-4	0.875	INTRON NK7.1
2R	6372852	2R_6372852_SNP [dm3] 2R_10485347_SNP [dm6]	T	C	2.724e^-4	0.875	UPSTREAM pre-lola-G INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12455393	3R_12455393_SNP [dm3] 3R_16629671_SNP [dm6]	T	A	2.724e^-4	0.875	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21544517	3L_21544517_SNP [dm3] 3L_21551417_SNP [dm6]	G	A	2.733e^-4	0.875	SYNONYMOUS_CODING Wnk
3L	18204919	3L_18204919_SNP [dm3] 3L_18211819_SNP [dm6]	T	C	2.742e^-4	0.875	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	10020592	3L_10020592_INS [dm3] 3L_10027492_INS [dm6]	T	TT	2.746e^-4	0.875	INTRON dpr6
3L	10020709	3L_10020709_SNP [dm3] 3L_10027609_SNP [dm6]	A	T	2.746e^-4	0.875	INTRON dpr6
3L	10020710	3L_10020710_SNP [dm3] 3L_10027610_SNP [dm6]	C	T	2.746e^-4	0.875	INTRON dpr6
3L	10020782	3L_10020782_SNP [dm3] 3L_10027682_SNP [dm6]	G	A	2.746e^-4	0.875	INTRON dpr6
2R	7444168	2R_7444168_SNP [dm3] 2R_11556663_SNP [dm6]	A	G	2.753e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16168204	2R_16168204_SNP [dm3] 2R_20280699_SNP [dm6]	A	T	2.753e^-4	0.875	UPSTREAM CG9090 DOWNSTREAM CG16868 INTRON CG9090
3L	13239865	3L_13239865_SNP [dm3] 3L_13246765_SNP [dm6]	C	T	2.754e^-4	0.875	DOWNSTREAM CG32119 INTRON caps
X	6543727	X_6543727_SNP [dm3] X_6649694_SNP [dm6]	A	G	2.755e^-4	0.875	NON_SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9497941	X_9497941_SNP [dm3] X_9603908_SNP [dm6]	A	G	2.755e^-4	0.875	SYNONYMOUS_CODING Gga DOWNSTREAM Lst8
X	8831956	X_8831956_SNP [dm3] X_8937923_SNP [dm6]	C	T	2.758e^-4	0.875	INTRON rdgA
3R	12109372	3R_12109372_SNP [dm3] 3R_16283650_SNP [dm6]	A	T	2.761e^-4	0.875	INTRON gish
3R	19097313	3R_19097313_SNP [dm3] 3R_23271591_SNP [dm6]	G	A	2.764e^-4	0.875	INTRON orb
2L	12892573	2L_12892573_SNP [dm3] 2L_12892573_SNP [dm6]	A	G	2.765e^-4	0.875	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11048205	3L_11048205_SNP [dm3] 3L_11055105_SNP [dm6]	G	A	2.765e^-4	0.875	UPSTREAM CG7888 INTRON CG7888
3L	13092888	3L_13092888_SNP [dm3] 3L_13099788_SNP [dm6]	G	C	2.766e^-4	0.875	INTERGENIC
3L	6504635	3L_6504635_SNP [dm3] 3L_6511535_SNP [dm6]	C	G	2.773e^-4	0.876	INTRON sfl
2L	7590946	2L_7590946_SNP [dm3] 2L_7590946_SNP [dm6]	A	T	2.778e^-4	0.876	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3L	10836577	3L_10836577_DEL [dm3] 3L_10843477_DEL [dm6]	TTGTC	AGA	2.788e^-4	0.878	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2168795	X_2168795_SNP [dm3] X_2274762_SNP [dm6]	G	A	2.798e^-4	0.88	START_GAINED CG2918 UTR_5_PRIME CG2918 INTRON CG2918	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	9821632	2L_9821632_SNP [dm3] 2L_9821632_SNP [dm6]	G	A	2.812e^-4	0.88	INTRON nAChRalpha6
3L	10637176	3L_10637176_SNP [dm3] 3L_10644076_SNP [dm6]	A	G	2.812e^-4	0.88	SYNONYMOUS_CODING CG14153 INTRON CG32066
2L	6800496	2L_6800496_SNP [dm3] 2L_6800496_SNP [dm6]	A	T	2.817e^-4	0.88	SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3R	382361	3R_382361_SNP [dm3] 3R_4556639_SNP [dm6]	G	A	2.819e^-4	0.88	INTRON CG34357
3L	6498227	3L_6498227_SNP [dm3] 3L_6505127_SNP [dm6]	G	T	2.824e^-4	0.88	SPLICE_SITE_REGION sfl INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	11735257	2R_11735257_SNP [dm3] 2R_15847752_SNP [dm6]	C	T	2.830e^-4	0.88	UPSTREAM CG8249 & 1 other INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2R	7515925	2R_7515925_SNP [dm3] 2R_11628420_SNP [dm6]	G	A	2.835e^-4	0.88	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	16830047	X_16830047_SNP [dm3] X_16936014_SNP [dm6]	C	G	2.844e^-4	0.88	DOWNSTREAM CG4928 INTRON CG4928
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	2.848e^-4	0.88	INTRON CG6225
2L	6020321	2L_6020321_SNP [dm3] 2L_6020321_SNP [dm6]	A	G	2.852e^-4	0.88	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19914369	2L_19914369_SNP [dm3] 2L_19914369_SNP [dm6]	C	T	2.854e^-4	0.88	UPSTREAM Victoria INTRON sick
X	3105029	X_3105029_SNP [dm3] X_3210996_SNP [dm6]	A	T	2.858e^-4	0.88	INTRON dnc
3R	19944090	3R_19944090_SNP [dm3] 3R_24118368_SNP [dm6]	G	A	2.860e^-4	0.88	UPSTREAM Rootletin INTRON Rootletin
2R	5141765	2R_5141765_SNP [dm3] 2R_9254260_SNP [dm6]	T	C	2.865e^-4	0.88	INTRON Pkn
2R	15945463	2R_15945463_SNP [dm3] 2R_20057958_SNP [dm6]	T	G	2.878e^-4	0.883	UPSTREAM CR44631 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	12143035	2L_12143035_SNP [dm3] 2L_12143035_SNP [dm6]	A	T	2.883e^-4	0.883	INTRON CG31760
2L	21376730	2L_21376730_SNP [dm3] 2L_21376730_SNP [dm6]	A	C	2.891e^-4	0.884	SYNONYMOUS_CODING CG8665
3L	10876055	3L_10876055_SNP [dm3] 3L_10882955_SNP [dm6]	A	T	2.895e^-4	0.884	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	6426197	2R_6426197_SNP [dm3] 2R_10538692_SNP [dm6]	C	T	2.904e^-4	0.884	INTRON lola	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	9900302	3L_9900302_SNP [dm3] 3L_9907202_SNP [dm6]	A	T	2.907e^-4	0.884	UPSTREAM CG34356 INTERGENIC
3L	21603487	3L_21603487_SNP [dm3] 3L_21610387_SNP [dm6]	G	A	2.931e^-4	0.889	INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2661171	3L_2661171_SNP [dm3] 3L_2661171_SNP [dm6]	T	C	2.935e^-4	0.889	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
2L	20382506	2L_20382506_SNP [dm3] 2L_20382506_SNP [dm6]	G	C	2.935e^-4	0.889	UPSTREAM CG16798 INTERGENIC
2L	20376827	2L_20376827_SNP [dm3] 2L_20376827_SNP [dm6]	T	A	2.956e^-4	0.892	DOWNSTREAM CG16798 INTERGENIC
2R	4033443	2R_4033443_SNP [dm3] 2R_8145938_SNP [dm6]	T	C	2.958e^-4	0.892	UTR_5_PRIME Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	17361464	2L_17361464_SNP [dm3] 2L_17361464_SNP [dm6]	A	G	2.968e^-4	0.892	EXON CR44346
3R	15638504	3R_15638504_SNP [dm3] 3R_19812782_SNP [dm6]	G	A	2.972e^-4	0.892	INTRON bnl
2R	16758675	2R_16758675_SNP [dm3] 2R_20871170_SNP [dm6]	C	A	2.978e^-4	0.892	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2R	19971467	2R_19971467_SNP [dm3] 2R_24083944_SNP [dm6]	T	C	2.980e^-4	0.892	SYNONYMOUS_CODING CG16786
2R	14614740	2R_14614740_SNP [dm3] 2R_18727235_SNP [dm6]	C	A	2.989e^-4	0.892	DOWNSTREAM List INTRON Hs3st-A
3R	12146124	3R_12146124_INS [dm3] 3R_16320402_INS [dm6]	G	GCTCTG	2.989e^-4	0.892	UPSTREAM tRNA:F2:89BC INTRON Sulf1
X	22234778	X_22234778_SNP [dm3] X_22832942_SNP [dm6]	A	T	2.992e^-4	0.892	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13077255	3R_13077255_SNP [dm3] 3R_17251533_SNP [dm6]	T	A	3.004e^-4	0.892	INTRON beat-IIb
2R	4033755	2R_4033755_SNP [dm3] 2R_8146250_SNP [dm6]	A	C	3.007e^-4	0.892	UPSTREAM Lpin DOWNSTREAM kermit INTRON Lpin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26697070	3R_26697070_SNP [dm3] 3R_30871348_SNP [dm6]	C	A	3.008e^-4	0.892	NON_SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10846975	3L_10846975_SNP [dm3] 3L_10853875_SNP [dm6]	T	A	3.013e^-4	0.892	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	17243979	X_17243979_SNP [dm3] X_17349946_SNP [dm6]	C	T	3.014e^-4	0.892	INTERGENIC
3L	5782703	3L_5782703_SNP [dm3] 3L_5789603_SNP [dm6]	G	A	3.039e^-4	0.895	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	14613220	3R_14613220_SNP [dm3] 3R_18787498_SNP [dm6]	G	T	3.043e^-4	0.895	INTRON CG7720
X	22228002	X_22228002_DEL [dm3] X_22826166_DEL [dm6]	TTTTGCATT	T	3.047e^-4	0.895	UTR_3_PRIME fog
2L	20335556	2L_20335556_DEL [dm3] 2L_20335556_DEL [dm6]	CGCGCC	C	3.048e^-4	0.895	INTRON spir
2L	19899761	2L_19899761_SNP [dm3] 2L_19899761_SNP [dm6]	G	A	3.050e^-4	0.895	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20406321	2L_20406321_SNP [dm3] 2L_20406321_SNP [dm6]	A	G	3.053e^-4	0.895	INTRON CG10947
X	5527310	X_5527310_SNP [dm3] X_5633277_SNP [dm6]	G	T	3.059e^-4	0.896	INTRON CG42492
X	21329531	X_21329531_SNP [dm3] X_21458504_SNP [dm6]	A	G	3.069e^-4	0.897	UPSTREAM CG42343 INTERGENIC
X	16101917	X_16101917_SNP [dm3] X_16207884_SNP [dm6]	C	A	3.085e^-4	0.899	INTERGENIC
3L	1091760	3L_1091760_SNP [dm3] 3L_1091760_SNP [dm6]	T	A	3.095e^-4	0.899	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	8640168	3L_8640168_SNP [dm3] 3L_8647068_SNP [dm6]	C	T	3.097e^-4	0.899	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19380104	2L_19380104_SNP [dm3] 2L_19380104_SNP [dm6]	G	T	3.099e^-4	0.899	UPSTREAM CG17350 INTERGENIC
2R	16546921	2R_16546921_SNP [dm3] 2R_20659416_SNP [dm6]	G	T	3.100e^-4	0.899	SYNONYMOUS_CODING Lrt
2L	20138036	2L_20138036_SNP [dm3] 2L_20138036_SNP [dm6]	A	T	3.109e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6500407	3L_6500407_SNP [dm3] 3L_6507307_SNP [dm6]	C	G	3.117e^-4	0.9	INTRON sfl
3L	763639	3L_763639_SNP [dm3] 3L_763639_SNP [dm6]	A	G	3.119e^-4	0.9	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1639528	2L_1639528_SNP [dm3] 2L_1639528_SNP [dm6]	A	T	3.124e^-4	0.9	INTERGENIC
3R	16630251	3R_16630251_DEL [dm3] 3R_20804529_DEL [dm6]	CAC	C	3.136e^-4	0.9	INTRON Syp
X	16845366	X_16845366_SNP [dm3] X_16951333_SNP [dm6]	T	C	3.142e^-4	0.9	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18624668	3R_18624668_SNP [dm3] 3R_22798946_SNP [dm6]	G	A	3.145e^-4	0.9	INTERGENIC
3L	3760228	3L_3760228_SNP [dm3] 3L_3760228_SNP [dm6]	T	C	3.146e^-4	0.9	INTRON CG32264
2R	19972742	2R_19972742_SNP [dm3] 2R_24085219_SNP [dm6]	A	G	3.149e^-4	0.9	SYNONYMOUS_CODING CG16786	TF binding site mE1_TFBS_sens
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	3.153e^-4	0.9	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	5979102	3R_5979102_SNP [dm3] 3R_10153380_SNP [dm6]	T	A	3.155e^-4	0.9	INTRON Invadolysin
X	19428888	X_19428888_SNP [dm3] X_19534855_SNP [dm6]	T	C	3.161e^-4	0.9	INTRON CG32532	TF binding site mE1_TFBS_chinmo
2R	14665656	2R_14665656_SNP [dm3] 2R_18778151_SNP [dm6]	A	T	3.181e^-4	0.902	DOWNSTREAM CR43964 INTERGENIC
3R	683384	3R_683384_SNP [dm3] 3R_4857662_SNP [dm6]	C	G	3.187e^-4	0.902	INTRON opa	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20889905	X_20889905_SNP [dm3] X_21018878_SNP [dm6]	G	T	3.189e^-4	0.902	INTERGENIC
2R	19883637	2R_19883637_SNP [dm3] 2R_23996114_SNP [dm6]	T	C	3.191e^-4	0.902	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
X	20889903	X_20889903_SNP [dm3] X_21018876_SNP [dm6]	G	T	3.197e^-4	0.902	INTERGENIC
2L	6008042	2L_6008042_SNP [dm3] 2L_6008042_SNP [dm6]	G	A	3.215e^-4	0.902	INTRON CG9098
3R	16328239	3R_16328239_SNP [dm3] 3R_20502517_SNP [dm6]	T	C	3.224e^-4	0.902	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2R	9883267	2R_9883267_SNP [dm3] 2R_13995762_SNP [dm6]	G	A	3.231e^-4	0.902	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15551750	3R_15551750_SNP [dm3] 3R_19726028_SNP [dm6]	G	T	3.240e^-4	0.902	INTERGENIC
2L	19875536	2L_19875536_SNP [dm3] 2L_19875536_SNP [dm6]	C	G	3.244e^-4	0.902	INTRON sick	TF binding site mE1_TFBS_cad
2R	16758526	2R_16758526_SNP [dm3] 2R_20871021_SNP [dm6]	A	G	3.247e^-4	0.902	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3L	13230503	3L_13230503_SNP [dm3] 3L_13237403_SNP [dm6]	G	C	3.262e^-4	0.902	INTRON caps	TF binding site mE1_TFBS_HSA
2L	9948821	2L_9948821_SNP [dm3] 2L_9948821_SNP [dm6]	A	G	3.266e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
X	18931718	X_18931718_SNP [dm3] X_19037685_SNP [dm6]	G	T	3.267e^-4	0.902	INTERGENIC
3R	18534862	3R_18534862_SNP [dm3] 3R_22709140_SNP [dm6]	C	T	3.272e^-4	0.902	NON_SYNONYMOUS_CODING CG4907	TF binding site mE1_TFBS_sens
2R	20391742	2R_20391742_SNP [dm3] 2R_24504219_SNP [dm6]	T	C	3.275e^-4	0.902	INTERGENIC
2R	11734186	2R_11734186_SNP [dm3] 2R_15846681_SNP [dm6]	A	C	3.278e^-4	0.902	INTRON tun & 1 other	TF binding site mE1_TFBS_sens
3R	16238091	3R_16238091_SNP [dm3] 3R_20412369_SNP [dm6]	C	T	3.278e^-4	0.902	INTRON Gfrl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14159885	3R_14159885_SNP [dm3] 3R_18334163_SNP [dm6]	A	G	3.278e^-4	0.902	UTR_3_PRIME CG15803
X	22228035	X_22228035_SNP [dm3] X_22826199_SNP [dm6]	C	T	3.289e^-4	0.902	UTR_3_PRIME fog
2R	14580657	2R_14580657_SNP [dm3] 2R_18693152_SNP [dm6]	C	T	3.295e^-4	0.902	INTRON Sik3
3L	5940704	3L_5940704_SNP [dm3] 3L_5947604_SNP [dm6]	T	C	3.298e^-4	0.902	INTRON CG33993	TF binding site mE1_TFBS_cad
3R	27051508	3R_27051508_SNP [dm3] 3R_31225786_SNP [dm6]	T	G	3.300e^-4	0.902	INTRON CG12054	TF binding site mE1_TFBS_cad
3R	15409689	3R_15409689_SNP [dm3] 3R_19583967_SNP [dm6]	T	G	3.303e^-4	0.902	INTRON Dys
3R	19733886	3R_19733886_SNP [dm3] 3R_23908164_SNP [dm6]	A	G	3.314e^-4	0.902	INTRON sba
X	3764311	X_3764311_SNP [dm3] X_3870278_SNP [dm6]	C	T	3.314e^-4	0.902	INTRON yin & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_inv
X	5527426	X_5527426_SNP [dm3] X_5633393_SNP [dm6]	G	A	3.317e^-4	0.902	SYNONYMOUS_CODING CG42492
2L	20204575	2L_20204575_DEL [dm3] 2L_20204575_DEL [dm6]	TTTTGACCTTTTCCTTTTGC...	T	3.322e^-4	0.902	INTERGENIC	transposable element FlyBase
3R	20208539	3R_20208539_SNP [dm3] 3R_24382817_SNP [dm6]	T	A	3.323e^-4	0.902	DOWNSTREAM CG17780 INTERGENIC
X	3458588	X_3458588_INS [dm3] X_3564555_INS [dm6]	C	CC	3.331e^-4	0.902	INTRON CG32791 & 1 other	TF binding site BDTNP1_TFBS_dl
X	18814108	X_18814108_SNP [dm3] X_18920075_SNP [dm6]	A	C	3.342e^-4	0.902	INTERGENIC
2L	19882953	2L_19882953_SNP [dm3] 2L_19882953_SNP [dm6]	A	G	3.344e^-4	0.902	INTRON sick
2R	7182170	2R_7182170_SNP [dm3] 2R_11294665_SNP [dm6]	C	T	3.344e^-4	0.902	UTR_3_PRIME CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17964922	2R_17964922_SNP [dm3] 2R_22077417_SNP [dm6]	C	T	3.352e^-4	0.902	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4503203	3L_4503203_SNP [dm3] 3L_4503203_SNP [dm6]	C	T	3.356e^-4	0.902	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
2R	7182253	2R_7182253_SNP [dm3] 2R_11294748_SNP [dm6]	T	C	3.362e^-4	0.902	SYNONYMOUS_CODING CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13924066	3R_13924066_SNP [dm3] 3R_18098344_SNP [dm6]	G	A	3.363e^-4	0.902	INTRON sr
3L	4100352	3L_4100352_SNP [dm3] 3L_4100352_SNP [dm6]	T	A	3.364e^-4	0.902	INTRON CG14995
X	22231585	X_22231585_SNP [dm3] X_22829749_SNP [dm6]	G	A	3.375e^-4	0.902	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	3688902	3L_3688902_SNP [dm3] 3L_3688902_SNP [dm6]	G	T	3.383e^-4	0.902	SPLICE_SITE_DONOR CR43484 INTRON CR43484 EXON CR43484
3R	14321521	3R_14321521_SNP [dm3] 3R_18495799_SNP [dm6]	C	G	3.384e^-4	0.902	INTRON fru
2L	9995327	2L_9995327_SNP [dm3] 2L_9995327_SNP [dm6]	G	A	3.390e^-4	0.902	UTR_3_PRIME bib DOWNSTREAM CG31875
2R	19077679	2R_19077679_SNP [dm3] 2R_23190156_SNP [dm6]	C	T	3.395e^-4	0.902	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	23216219	3R_23216219_SNP [dm3] 3R_27390497_SNP [dm6]	T	C	3.396e^-4	0.902	INTRON side
2L	20380778	2L_20380778_SNP [dm3] 2L_20380778_SNP [dm6]	G	A	3.402e^-4	0.902	INTRON CG16798
3L	5264286	3L_5264286_SNP [dm3] 3L_5271186_SNP [dm6]	C	T	3.406e^-4	0.902	INTRON shep
2R	16048468	2R_16048468_SNP [dm3] 2R_20160963_SNP [dm6]	G	A	3.412e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26730304	3R_26730304_SNP [dm3] 3R_30904582_SNP [dm6]	C	T	3.419e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13128463	3L_13128463_SNP [dm3] 3L_13135363_SNP [dm6]	G	A	3.425e^-4	0.902	UPSTREAM CG33262 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1344305	2L_1344305_SNP [dm3] 2L_1344305_SNP [dm6]	G	T	3.426e^-4	0.902	UPSTREAM Cdlc2 & 1 other INTERGENIC
2L	11809374	2L_11809374_SNP [dm3] 2L_11809374_SNP [dm6]	A	T	3.428e^-4	0.902	UTR_5_PRIME crol UPSTREAM crol DOWNSTREAM CycY	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	18963936	2R_18963936_SNP [dm3] 2R_23076413_SNP [dm6]	G	T	3.433e^-4	0.902	SYNONYMOUS_CODING CG3085 DOWNSTREAM Art7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	13077261	3R_13077261_DEL [dm3] 3R_17251539_DEL [dm6]	TT	T	3.438e^-4	0.902	INTRON beat-IIb
2L	15134775	2L_15134775_INS [dm3] 2L_15134775_INS [dm6]	T	TATG	3.442e^-4	0.902	INTERGENIC
2L	15134777	2L_15134777_INS [dm3] 2L_15134777_INS [dm6]	C	CACG	3.442e^-4	0.902	INTERGENIC
2R	12665604	2R_12665604_INS [dm3] 2R_16778099_INS [dm6]	A	AAAA	3.443e^-4	0.902	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15002211	2R_15002211_SNP [dm3] 2R_19114706_SNP [dm6]	C	T	3.452e^-4	0.902	INTRON 5-HT1A
X	15796036	X_15796036_SNP [dm3] X_15902003_SNP [dm6]	G	A	3.457e^-4	0.902	SYNONYMOUS_CODING shi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19607309	2L_19607309_SNP [dm3] 2L_19607309_SNP [dm6]	C	T	3.468e^-4	0.902	INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	17973682	2R_17973682_SNP [dm3] 2R_22086177_SNP [dm6]	C	T	3.471e^-4	0.902	SYNONYMOUS_CODING CG13502 DOWNSTREAM Synj
X	16148404	X_16148404_SNP [dm3] X_16254371_SNP [dm6]	T	C	3.476e^-4	0.902	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4375891	X_4375891_SNP [dm3] X_4481858_SNP [dm6]	G	T	3.476e^-4	0.902	INTRON CR32773 & 1 other
2L	10371069	2L_10371069_SNP [dm3] 2L_10371069_SNP [dm6]	A	C	3.479e^-4	0.902	SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13077187	3R_13077187_SNP [dm3] 3R_17251465_SNP [dm6]	T	G	3.480e^-4	0.902	INTRON beat-IIb
3L	4114548	3L_4114548_SNP [dm3] 3L_4114548_SNP [dm6]	T	A	3.486e^-4	0.902	UTR_3_PRIME Chd64 DOWNSTREAM Ack
2L	4336486	2L_4336486_SNP [dm3] 2L_4336486_SNP [dm6]	T	C	3.491e^-4	0.902	UTR_5_PRIME Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15815546	X_15815546_SNP [dm3] X_15921513_SNP [dm6]	C	A	3.492e^-4	0.902	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
2R	6561169	2R_6561169_DEL [dm3] 2R_10673664_DEL [dm6]	TA	G	3.494e^-4	0.902	UTR_5_PRIME stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14957852	3R_14957852_SNP [dm3] 3R_19132130_SNP [dm6]	T	C	3.499e^-4	0.902	UPSTREAM Cyp12a5 DOWNSTREAM CG6040 INTERGENIC
2R	8944027	2R_8944027_SNP [dm3] 2R_13056522_SNP [dm6]	T	C	3.522e^-4	0.905	UTR_3_PRIME Drl-2 DOWNSTREAM Drl-2
3L	14034193	3L_14034193_SNP [dm3] 3L_14041093_SNP [dm6]	G	T	3.526e^-4	0.905	INTRON Hsc70Cb
3L	20901650	3L_20901650_SNP [dm3] 3L_20908550_SNP [dm6]	A	G	3.527e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12892582	2L_12892582_SNP [dm3] 2L_12892582_SNP [dm6]	G	T	3.532e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6800712	2L_6800712_SNP [dm3] 2L_6800712_SNP [dm6]	G	T	3.541e^-4	0.906	DOWNSTREAM tRNA:CR31631 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
3L	18166693	3L_18166693_SNP [dm3] 3L_18173593_SNP [dm6]	C	T	3.545e^-4	0.906	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19971425	2R_19971425_SNP [dm3] 2R_24083902_SNP [dm6]	A	G	3.551e^-4	0.906	SYNONYMOUS_CODING CG16786
2L	13890748	2L_13890748_SNP [dm3] 2L_13890748_SNP [dm6]	C	A	3.557e^-4	0.907	INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5409290	3L_5409290_SNP [dm3] 3L_5416190_SNP [dm6]	G	A	3.563e^-4	0.907	INTERGENIC
3R	20198321	3R_20198321_SNP [dm3] 3R_24372599_SNP [dm6]	G	A	3.572e^-4	0.907	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG17781	TF binding site mE1_TFBS_chinmo
3R	13924093	3R_13924093_SNP [dm3] 3R_18098371_SNP [dm6]	A	T	3.577e^-4	0.907	INTRON sr
3R	17504690	3R_17504690_SNP [dm3] 3R_21678968_SNP [dm6]	T	C	3.582e^-4	0.907	INTRON CG31176
2R	5144414	2R_5144414_DEL [dm3] 2R_9256909_DEL [dm6]	TT	T	3.583e^-4	0.907	UPSTREAM Pkn INTRON Pkn
3R	19712465	3R_19712465_SNP [dm3] 3R_23886743_SNP [dm6]	C	T	3.588e^-4	0.907	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7434656	2R_7434656_SNP [dm3] 2R_11547151_SNP [dm6]	C	A	3.606e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18186935	3R_18186935_SNP [dm3] 3R_22361213_SNP [dm6]	A	T	3.618e^-4	0.908	SYNONYMOUS_CODING PSR DOWNSTREAM Sar1	TF binding site mE1_TFBS_chinmo
X	5948537	X_5948537_INS [dm3] X_6054504_INS [dm6]	T	TT	3.621e^-4	0.908	INTRON CG5921	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
X	16592979	X_16592979_SNP [dm3] X_16698946_SNP [dm6]	C	A	3.621e^-4	0.908	DOWNSTREAM CG9676 INTRON CG4678
X	16615887	X_16615887_SNP [dm3] X_16721854_SNP [dm6]	C	G	3.630e^-4	0.908	UPSTREAM CG34325 INTRON CG32572
X	8857047	X_8857047_SNP [dm3] X_8963014_SNP [dm6]	A	G	3.632e^-4	0.908	INTRON rdgA
2R	15451568	2R_15451568_SNP [dm3] 2R_19564063_SNP [dm6]	T	A	3.643e^-4	0.908	DOWNSTREAM tRNA:CR33535 INTRON sm
X	16158128	X_16158128_SNP [dm3] X_16264095_SNP [dm6]	G	A	3.645e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14132654	2R_14132654_DEL [dm3] 2R_18245149_DEL [dm6]	TCTCCAGTCT	T	3.646e^-4	0.908	DOWNSTREAM CR44420 INTERGENIC
3R	13077169	3R_13077169_SNP [dm3] 3R_17251447_SNP [dm6]	T	A	3.654e^-4	0.908	INTRON beat-IIb
3R	13460852	3R_13460852_SNP [dm3] 3R_17635130_SNP [dm6]	T	C	3.669e^-4	0.908	INTRON CG43175
2L	11980200	2L_11980200_SNP [dm3] 2L_11980200_SNP [dm6]	G	T	3.674e^-4	0.908	INTERGENIC
2R	7434593	2R_7434593_SNP [dm3] 2R_11547088_SNP [dm6]	G	A	3.678e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	25981885	3R_25981885_SNP [dm3] 3R_30156163_SNP [dm6]	T	A	3.683e^-4	0.908	UTR_5_PRIME CG11498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15012964	X_15012964_SNP [dm3] X_15118931_SNP [dm6]	A	G	3.685e^-4	0.908	INTERGENIC
2R	17771482	2R_17771482_SNP [dm3] 2R_21883977_SNP [dm6]	C	A	3.689e^-4	0.908	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	17749844	3R_17749844_DEL [dm3] 3R_21924122_DEL [dm6]	TT	T	3.696e^-4	0.908	INTERGENIC
X	19238794	X_19238794_SNP [dm3] X_19344761_SNP [dm6]	T	C	3.705e^-4	0.908	INTRON nAChRalpha7
X	19238859	X_19238859_INS [dm3] X_19344826_INS [dm6]	T	TT	3.719e^-4	0.908	INTRON nAChRalpha7
3L	12015695	3L_12015695_SNP [dm3] 3L_12022595_SNP [dm6]	T	G	3.729e^-4	0.908	INTRON rols
3R	9924676	3R_9924676_SNP [dm3] 3R_14098954_SNP [dm6]	G	A	3.732e^-4	0.908	UPSTREAM CG9920 DOWNSTREAM PK1-R INTERGENIC
X	4946891	X_4946891_INS [dm3] X_5052858_INS [dm6]	T	TT	3.739e^-4	0.908	INTRON CR44833 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17265226	X_17265226_INS [dm3] X_17371193_INS [dm6]	A	AA	3.741e^-4	0.908	INTERGENIC
3R	23230851	3R_23230851_SNP [dm3] 3R_27405129_SNP [dm6]	C	T	3.744e^-4	0.908	INTRON side
X	14040018	X_14040018_SNP [dm3] X_14145985_SNP [dm6]	G	T	3.746e^-4	0.908	INTERGENIC
3L	11011123	3L_11011123_SNP [dm3] 3L_11018023_SNP [dm6]	G	A	3.761e^-4	0.908	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11446574	3L_11446574_SNP [dm3] 3L_11453474_SNP [dm6]	C	T	3.761e^-4	0.908	INTERGENIC
3L	11446575	3L_11446575_SNP [dm3] 3L_11453475_SNP [dm6]	T	A	3.761e^-4	0.908	INTERGENIC
X	22248397	X_22248397_INS [dm3] X_22846561_INS [dm6]	A	GTATG	3.767e^-4	0.908	INTRON fog & 1 other
2L	3676580	2L_3676580_SNP [dm3] 2L_3676580_SNP [dm6]	G	A	3.780e^-4	0.908	INTRON CG34340
X	18063906	X_18063906_SNP [dm3] X_18169873_SNP [dm6]	G	C	3.781e^-4	0.908	INTRON Frq1
X	18063942	X_18063942_SNP [dm3] X_18169909_SNP [dm6]	A	G	3.781e^-4	0.908	INTRON Frq1
2L	19874033	2L_19874033_SNP [dm3] 2L_19874033_SNP [dm6]	T	A	3.784e^-4	0.908	INTRON sick
3R	19097320	3R_19097320_SNP [dm3] 3R_23271598_SNP [dm6]	G	A	3.788e^-4	0.908	INTRON orb
X	8109995	X_8109995_SNP [dm3] X_8215962_SNP [dm6]	C	T	3.789e^-4	0.908	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18486096	2L_18486096_SNP [dm3] 2L_18486096_SNP [dm6]	C	G	3.789e^-4	0.908	SYNONYMOUS_CODING CG10176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2R	15235960	2R_15235960_SNP [dm3] 2R_19348455_SNP [dm6]	A	G	3.790e^-4	0.908	INTRON Rgk1
3L	6760635	3L_6760635_SNP [dm3] 3L_6767535_SNP [dm6]	T	G	3.796e^-4	0.908	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	15829628	3R_15829628_SNP [dm3] 3R_20003906_SNP [dm6]	T	C	3.797e^-4	0.908	INTRON Hs6st	TF binding site mE1_TFBS_zfh1
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	3.800e^-4	0.908	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	4176652	3L_4176652_SNP [dm3] 3L_4176652_SNP [dm6]	C	T	3.802e^-4	0.908	SYNONYMOUS_CODING Teh4 INTRON CG18675
2R	17771483	2R_17771483_SNP [dm3] 2R_21883978_SNP [dm6]	A	G	3.805e^-4	0.908	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	18731336	3R_18731336_INS [dm3] 3R_22905614_INS [dm6]	TGGT	ACTAAA	3.805e^-4	0.908	INTRON klg
3L	10076845	3L_10076845_INS [dm3] 3L_10083745_INS [dm6]	A	AA	3.805e^-4	0.908	INTRON dpr6
2L	19681850	2L_19681850_SNP [dm3] 2L_19681850_SNP [dm6]	T	C	3.829e^-4	0.913	INTRON Lar
2L	12143562	2L_12143562_SNP [dm3] 2L_12143562_SNP [dm6]	C	T	3.836e^-4	0.913	INTRON CG31760
3R	26693181	3R_26693181_SNP [dm3] 3R_30867459_SNP [dm6]	G	A	3.855e^-4	0.913	UPSTREAM Cpr100A INTERGENIC
X	8856966	X_8856966_SNP [dm3] X_8962933_SNP [dm6]	A	G	3.856e^-4	0.913	INTRON rdgA
2L	20391882	2L_20391882_SNP [dm3] 2L_20391882_SNP [dm6]	G	T	3.856e^-4	0.913	INTRON CG10947
3L	12187706	3L_12187706_SNP [dm3] 3L_12194606_SNP [dm6]	T	C	3.857e^-4	0.913	UPSTREAM thoc6 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	14429468	3R_14429468_SNP [dm3] 3R_18603746_SNP [dm6]	T	A	3.874e^-4	0.913	INTRON qin & 1 other
3R	13460874	3R_13460874_SNP [dm3] 3R_17635152_SNP [dm6]	C	T	3.886e^-4	0.913	INTRON CG43175
3R	16327141	3R_16327141_SNP [dm3] 3R_20501419_SNP [dm6]	G	A	3.888e^-4	0.913	UTR_5_PRIME Dic2
2L	1641714	2L_1641714_SNP [dm3] 2L_1641714_SNP [dm6]	C	T	3.897e^-4	0.913	INTERGENIC
X	19346695	X_19346695_INS [dm3] X_19452662_INS [dm6]	T	TT	3.898e^-4	0.913	INTRON kek5	TF binding site mE1_TFBS_chinmo
2L	19875295	2L_19875295_SNP [dm3] 2L_19875295_SNP [dm6]	G	A	3.899e^-4	0.913	INTRON sick	TF binding site mE1_TFBS_cad
X	12090334	X_12090334_SNP [dm3] X_12196301_SNP [dm6]	A	G	3.904e^-4	0.913	SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo
2R	19077678	2R_19077678_SNP [dm3] 2R_23190155_SNP [dm6]	A	T	3.906e^-4	0.913	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	18531277	3R_18531277_SNP [dm3] 3R_22705555_SNP [dm6]	G	A	3.908e^-4	0.913	INTRON CG13842
X	4734567	X_4734567_SNP [dm3] X_4840534_SNP [dm6]	G	A	3.909e^-4	0.913	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15727542	3L_15727542_SNP [dm3] 3L_15734442_SNP [dm6]	G	T	3.909e^-4	0.913	INTERGENIC
X	21463399	X_21463399_DEL [dm3] X_21592372_DEL [dm6]	AA	A	3.942e^-4	0.914	INTERGENIC
3L	13469598	3L_13469598_SNP [dm3] 3L_13476498_SNP [dm6]	A	T	3.944e^-4	0.914	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6486312	3L_6486312_SNP [dm3] 3L_6493212_SNP [dm6]	A	T	3.946e^-4	0.914	NON_SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
3L	6486320	3L_6486320_SNP [dm3] 3L_6493220_SNP [dm6]	A	G	3.946e^-4	0.914	SYNONYMOUS_CODING CG10144	TF binding site mE1_TFBS_sens
X	22231644	X_22231644_SNP [dm3] X_22829808_SNP [dm6]	C	T	3.950e^-4	0.914	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	18185798	3R_18185798_SNP [dm3] 3R_22360076_SNP [dm6]	G	C	3.951e^-4	0.914	UTR_3_PRIME Sar1 DOWNSTREAM PSR
3R	19132337	3R_19132337_SNP [dm3] 3R_23306615_SNP [dm6]	G	A	3.953e^-4	0.914	INTRON pnt
2L	20631982	2L_20631982_SNP [dm3] 2L_20631982_SNP [dm6]	A	C	3.953e^-4	0.914	INTERGENIC
3R	13845479	3R_13845479_SNP [dm3] 3R_18019757_SNP [dm6]	C	T	3.955e^-4	0.914	DOWNSTREAM cpo INTRON DNaseII
3L	12855735	3L_12855735_SNP [dm3] 3L_12862635_SNP [dm6]	A	G	3.968e^-4	0.916	SYNONYMOUS_CODING CG10943
X	3458706	X_3458706_SNP [dm3] X_3564673_SNP [dm6]	C	T	3.977e^-4	0.916	INTRON CG32791 & 1 other
X	4042184	X_4042184_SNP [dm3] X_4148151_SNP [dm6]	G	C	3.980e^-4	0.916	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	5141279	2R_5141279_SNP [dm3] 2R_9253774_SNP [dm6]	A	G	3.985e^-4	0.916	UTR_3_PRIME Pkn DOWNSTREAM Pkn & 1 other
3L	16192594	3L_16192594_SNP [dm3] 3L_16199494_SNP [dm6]	G	A	3.998e^-4	0.917	UPSTREAM CG33689 DOWNSTREAM CG33687 INTRON CG33688
X	22248376	X_22248376_SNP [dm3] X_22846540_SNP [dm6]	T	A	3.999e^-4	0.917	INTRON fog & 1 other
2R	10979978	2R_10979978_SNP [dm3] 2R_15092473_SNP [dm6]	G	A	4.010e^-4	0.917	DOWNSTREAM CR44457 INTERGENIC
3L	602133	3L_602133_SNP [dm3] 3L_602133_SNP [dm6]	A	T	4.018e^-4	0.917	INTRON CG13893
3L	5752965	3L_5752965_SNP [dm3] 3L_5759865_SNP [dm6]	C	T	4.023e^-4	0.917	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16454892	3L_16454892_SNP [dm3] 3L_16461792_SNP [dm6]	T	G	4.031e^-4	0.917	INTRON CG33158
2L	9951537	2L_9951537_SNP [dm3] 2L_9951537_SNP [dm6]	C	G	4.047e^-4	0.917	DOWNSTREAM CG13126 INTERGENIC
3R	13654588	3R_13654588_SNP [dm3] 3R_17828866_SNP [dm6]	T	A	4.047e^-4	0.917	INTRON tinc
3L	10628634	3L_10628634_SNP [dm3] 3L_10635534_SNP [dm6]	G	T	4.048e^-4	0.917	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
X	17243929	X_17243929_SNP [dm3] X_17349896_SNP [dm6]	T	C	4.051e^-4	0.917	INTERGENIC
2L	20070517	2L_20070517_SNP [dm3] 2L_20070517_SNP [dm6]	A	G	4.060e^-4	0.917	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
X	13848358	X_13848358_SNP [dm3] X_13954325_SNP [dm6]	G	A	4.060e^-4	0.917	UPSTREAM CG11068 INTRON mamo	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	14338492	3R_14338492_SNP [dm3] 3R_18512770_SNP [dm6]	C	A	4.061e^-4	0.917	INTRON fru
2R	19727001	2R_19727001_SNP [dm3] 2R_23839478_SNP [dm6]	T	A	4.064e^-4	0.917	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3L	3367865	3L_3367865_SNP [dm3] 3L_3367865_SNP [dm6]	T	C	4.079e^-4	0.917	UTR_3_PRIME kst
3R	9298634	3R_9298634_SNP [dm3] 3R_13472912_SNP [dm6]	T	A	4.082e^-4	0.917	INTERGENIC
3L	14323063	3L_14323063_SNP [dm3] 3L_14329963_SNP [dm6]	T	A	4.096e^-4	0.917	DOWNSTREAM CG13482 INTRON fz	TF binding site mE1_TFBS_cad
2R	6686720	2R_6686720_SNP [dm3] 2R_10799215_SNP [dm6]	C	A	4.101e^-4	0.917	UPSTREAM CG33144 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22528737	3R_22528737_SNP [dm3] 3R_26703015_SNP [dm6]	A	T	4.119e^-4	0.917	INTRON amon	TF binding site mE1_TFBS_chinmo
2L	20067536	2L_20067536_SNP [dm3] 2L_20067536_SNP [dm6]	G	C	4.120e^-4	0.917	INTRON bwa	TF binding site BDTNP1_TFBS_da
X	16829808	X_16829808_SNP [dm3] X_16935775_SNP [dm6]	T	A	4.143e^-4	0.917	INTRON CG4928
X	22049509	X_22049509_SNP [dm3] X_22647673_SNP [dm6]	T	C	4.147e^-4	0.917	INTERGENIC
3L	8703872	3L_8703872_SNP [dm3] 3L_8710772_SNP [dm6]	A	C	4.148e^-4	0.917	INTERGENIC	regulatory region REDfly_CRMs
3L	19171286	3L_19171286_SNP [dm3] 3L_19178186_SNP [dm6]	T	A	4.154e^-4	0.917	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26704326	3R_26704326_SNP [dm3] 3R_30878604_SNP [dm6]	A	G	4.163e^-4	0.917	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26704340	3R_26704340_SNP [dm3] 3R_30878618_SNP [dm6]	A	G	4.163e^-4	0.917	INTRON CG12071	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	26704997	3R_26704997_SNP [dm3] 3R_30879275_SNP [dm6]	C	T	4.163e^-4	0.917	INTRON CG12071	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17610088	3L_17610088_SNP [dm3] 3L_17616988_SNP [dm6]	T	C	4.163e^-4	0.917	INTRON Eip74EF
3L	1452356	3L_1452356_SNP [dm3] 3L_1452356_SNP [dm6]	C	A	4.170e^-4	0.917	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22484389	3R_22484389_SNP [dm3] 3R_26658667_SNP [dm6]	C	T	4.176e^-4	0.917	INTRON beat-VII
2L	20355039	2L_20355039_SNP [dm3] 2L_20355039_SNP [dm6]	C	A	4.177e^-4	0.917	INTRON RtGEF	TF binding site mE1_TFBS_cad
X	15317828	X_15317828_SNP [dm3] X_15423795_SNP [dm6]	G	A	4.177e^-4	0.917	INTRON Cngl
X	15642451	X_15642451_SNP [dm3] X_15748418_SNP [dm6]	C	T	4.179e^-4	0.917	SYNONYMOUS_CODING Tcp-1zeta UPSTREAM CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	20393291	3R_20393291_SNP [dm3] 3R_24567569_SNP [dm6]	G	A	4.180e^-4	0.917	INTRON CG13624	TF binding site mE1_TFBS_cnc
2R	7466143	2R_7466143_SNP [dm3] 2R_11578638_SNP [dm6]	C	T	4.182e^-4	0.917	UTR_3_PRIME tou DOWNSTREAM tou
2L	4985671	2L_4985671_INS [dm3] 2L_4985671_INS [dm6]	T	TT	4.196e^-4	0.917	INTRON CG34126
3R	14009210	3R_14009210_SNP [dm3] 3R_18183488_SNP [dm6]	C	A	4.196e^-4	0.917	UPSTREAM cdm DOWNSTREAM CG7208 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1360326	3L_1360326_DEL [dm3] 3L_1360326_DEL [dm6]	GTG	G	4.203e^-4	0.917	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2816504	X_2816504_SNP [dm3] X_2922471_SNP [dm6]	A	T	4.214e^-4	0.917	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site mE1_TFBS_chinmo
3R	13077166	3R_13077166_SNP [dm3] 3R_17251444_SNP [dm6]	T	G	4.220e^-4	0.917	INTRON beat-IIb
3R	18488399	3R_18488399_SNP [dm3] 3R_22662677_SNP [dm6]	G	T	4.228e^-4	0.917	INTRON CG45058
3L	18269802	3L_18269802_SNP [dm3] 3L_18276702_SNP [dm6]	T	C	4.231e^-4	0.917	INTERGENIC
3R	24373270	3R_24373270_SNP [dm3] 3R_28547548_SNP [dm6]	A	T	4.233e^-4	0.917	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6306022	3R_6306022_SNP [dm3] 3R_10480300_SNP [dm6]	A	T	4.245e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15134853	2L_15134853_DEL [dm3] 2L_15134853_DEL [dm6]	TCTGAACCAA	T	4.245e^-4	0.917	INTERGENIC
2L	15134865	2L_15134865_INS [dm3] 2L_15134865_INS [dm6]	A	ATTCGTA	4.245e^-4	0.917	INTERGENIC
3L	17953311	3L_17953311_SNP [dm3] 3L_17960211_SNP [dm6]	T	A	4.261e^-4	0.917	INTRON Eip75B
3L	13130657	3L_13130657_SNP [dm3] 3L_13137557_SNP [dm6]	T	C	4.262e^-4	0.917	DOWNSTREAM CG33262 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	9341350	3R_9341350_SNP [dm3] 3R_13515628_SNP [dm6]	G	A	4.270e^-4	0.917	INTERGENIC
3R	27292695	3R_27292695_SNP [dm3] 3R_31466973_SNP [dm6]	A	C	4.273e^-4	0.917	INTERGENIC
X	3458691	X_3458691_SNP [dm3] X_3564658_SNP [dm6]	T	G	4.278e^-4	0.917	INTRON CG32791 & 1 other
2L	20041270	2L_20041270_SNP [dm3] 2L_20041270_SNP [dm6]	C	A	4.286e^-4	0.917	INTRON sNPF
2L	20041271	2L_20041271_SNP [dm3] 2L_20041271_SNP [dm6]	A	G	4.286e^-4	0.917	INTRON sNPF
X	14330589	X_14330589_SNP [dm3] X_14436556_SNP [dm6]	G	C	4.287e^-4	0.917	INTRON dpr8
3R	18257971	3R_18257971_SNP [dm3] 3R_22432249_SNP [dm6]	A	G	4.295e^-4	0.917	INTRON CG13847
3L	20436290	3L_20436290_SNP [dm3] 3L_20443190_SNP [dm6]	A	C	4.295e^-4	0.917	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25538296	3R_25538296_SNP [dm3] 3R_29712574_SNP [dm6]	G	A	4.297e^-4	0.917	DOWNSTREAM CR45569 INTERGENIC
X	4606678	X_4606678_SNP [dm3] X_4712645_SNP [dm6]	A	G	4.300e^-4	0.917	INTRON Proc-R
2R	2108862	2R_2108862_SNP [dm3] 2R_6221357_SNP [dm6]	G	C	4.309e^-4	0.917	INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	16630288	3R_16630288_SNP [dm3] 3R_20804566_SNP [dm6]	C	T	4.311e^-4	0.917	INTRON Syp
3R	6272638	3R_6272638_SNP [dm3] 3R_10446916_SNP [dm6]	T	C	4.312e^-4	0.917	INTERGENIC
3L	17950574	3L_17950574_SNP [dm3] 3L_17957474_SNP [dm6]	T	C	4.318e^-4	0.917	INTRON Eip75B
3L	8624605	3L_8624605_SNP [dm3] 3L_8631505_SNP [dm6]	A	G	4.319e^-4	0.917	DOWNSTREAM Cdc6 INTRON Zasp66
X	9736746	X_9736746_SNP [dm3] X_9842713_SNP [dm6]	C	T	4.321e^-4	0.917	INTRON CG32698
2R	20352473	2R_20352473_SNP [dm3] 2R_24464950_SNP [dm6]	T	A	4.325e^-4	0.917	INTRON CG13579	regulatory region REDfly_CRMs
X	22234330	X_22234330_SNP [dm3] X_22832494_SNP [dm6]	A	G	4.329e^-4	0.917	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8672010	2R_8672010_SNP [dm3] 2R_12784505_SNP [dm6]	C	G	4.331e^-4	0.917	SYNONYMOUS_CODING sca EXON CR45137
2R	5087490	2R_5087490_SNP [dm3] 2R_9199985_SNP [dm6]	C	T	4.334e^-4	0.917	DOWNSTREAM unpg INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9859206	3R_9859206_SNP [dm3] 3R_14033484_SNP [dm6]	G	A	4.337e^-4	0.917	INTRON CG3061	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22278588	3R_22278588_SNP [dm3] 3R_26452866_SNP [dm6]	C	T	4.338e^-4	0.917	SYNONYMOUS_CODING CG5447 DOWNSTREAM Hex-t2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12687741	2R_12687741_SNP [dm3] 2R_16800236_SNP [dm6]	C	A	4.344e^-4	0.917	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22178557	3R_22178557_SNP [dm3] 3R_26352835_SNP [dm6]	G	C	4.347e^-4	0.917	INTRON CG33970
3L	22324420	3L_22324420_DEL [dm3] 3L_22331320_DEL [dm6]	ACA	A	4.351e^-4	0.917	DOWNSTREAM CG32450 INTRON Ten-m
3L	14323097	3L_14323097_SNP [dm3] 3L_14329997_SNP [dm6]	G	T	4.351e^-4	0.917	DOWNSTREAM CG13482 INTRON fz	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11940159	2L_11940159_SNP [dm3] 2L_11940159_SNP [dm6]	A	C	4.355e^-4	0.917	DOWNSTREAM Or33c INTERGENIC
3L	3366288	3L_3366288_SNP [dm3] 3L_3366288_SNP [dm6]	C	A	4.362e^-4	0.917	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19879253	2L_19879253_SNP [dm3] 2L_19879253_SNP [dm6]	G	A	4.369e^-4	0.918	INTRON sick
3L	7249617	3L_7249617_SNP [dm3] 3L_7256517_SNP [dm6]	T	A	4.375e^-4	0.918	INTRON CG14830
3L	19269055	3L_19269055_SNP [dm3] 3L_19275955_SNP [dm6]	G	T	4.391e^-4	0.92	UTR_5_PRIME CG14086
2R	19077676	2R_19077676_SNP [dm3] 2R_23190153_SNP [dm6]	C	A	4.405e^-4	0.922	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	6488134	3L_6488134_SNP [dm3] 3L_6495034_SNP [dm6]	G	A	4.421e^-4	0.923	UPSTREAM sfl INTRON CG10144	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	4635218	X_4635218_SNP [dm3] X_4741185_SNP [dm6]	G	A	4.422e^-4	0.923	INTERGENIC
3R	20477716	3R_20477716_SNP [dm3] 3R_24651994_SNP [dm6]	A	G	4.424e^-4	0.923	SYNONYMOUS_CODING ash2 UTR_5_PRIME ash2	TF binding site mE1_TFBS_cad
2R	14497053	2R_14497053_SNP [dm3] 2R_18609548_SNP [dm6]	C	G	4.430e^-4	0.923	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3R	24554465	3R_24554465_SNP [dm3] 3R_28728743_SNP [dm6]	C	A	4.436e^-4	0.924	INTRON htt
3R	20477844	3R_20477844_SNP [dm3] 3R_24652122_SNP [dm6]	T	C	4.442e^-4	0.924	NON_SYNONYMOUS_CODING ash2 UTR_5_PRIME ash2	TF binding site mE1_TFBS_cad
2R	12267078	2R_12267078_SNP [dm3] 2R_16379573_SNP [dm6]	G	C	4.453e^-4	0.924	UPSTREAM CG43187 EXON CR45316 & 1 other
3L	8774198	3L_8774198_SNP [dm3] 3L_8781098_SNP [dm6]	C	T	4.455e^-4	0.924	INTRON Fhos
2R	17683053	2R_17683053_SNP [dm3] 2R_21795548_SNP [dm6]	C	A	4.463e^-4	0.924	UPSTREAM CG34204 INTERGENIC
3R	17760265	3R_17760265_SNP [dm3] 3R_21934543_SNP [dm6]	T	C	4.467e^-4	0.924	INTERGENIC
3R	26710490	3R_26710490_SNP [dm3] 3R_30884768_SNP [dm6]	G	T	4.472e^-4	0.924	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17759265	3R_17759265_SNP [dm3] 3R_21933543_SNP [dm6]	G	A	4.474e^-4	0.924	INTERGENIC
3R	9376566	3R_9376566_SNP [dm3] 3R_13550844_SNP [dm6]	G	T	4.477e^-4	0.924	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18535494	3R_18535494_SNP [dm3] 3R_22709772_SNP [dm6]	T	C	4.481e^-4	0.924	SYNONYMOUS_CODING CG4907
X	8857022	X_8857022_SNP [dm3] X_8962989_SNP [dm6]	C	T	4.494e^-4	0.924	INTRON rdgA
2R	18858554	2R_18858554_DEL [dm3] 2R_22971031_DEL [dm6]	GA	G	4.507e^-4	0.924	INTERGENIC
2R	16491729	2R_16491729_SNP [dm3] 2R_20604224_SNP [dm6]	G	C	4.511e^-4	0.924	INTRON bl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26752160	3R_26752160_SNP [dm3] 3R_30926438_SNP [dm6]	G	T	4.529e^-4	0.924	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	13077245	3R_13077245_SNP [dm3] 3R_17251523_SNP [dm6]	C	A	4.533e^-4	0.924	INTRON beat-IIb
2L	9637797	2L_9637797_DEL [dm3] 2L_9637797_DEL [dm6]	ATAT	A	4.534e^-4	0.924	INTRON Apoltp
2R	19077670	2R_19077670_SNP [dm3] 2R_23190147_SNP [dm6]	C	T	4.544e^-4	0.924	INTRON CG34371	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3L	10708540	3L_10708540_SNP [dm3] 3L_10715440_SNP [dm6]	A	T	4.544e^-4	0.924	INTERGENIC
3R	11030682	3R_11030682_SNP [dm3] 3R_15204960_SNP [dm6]	G	T	4.546e^-4	0.924	INTRON Spn88Ea
2R	14497162	2R_14497162_INS [dm3] 2R_18609657_INS [dm6]	A	AAATA	4.549e^-4	0.924	INTRON GEFmeso
2R	10003108	2R_10003108_SNP [dm3] 2R_14115603_SNP [dm6]	A	G	4.553e^-4	0.924	INTRON Prosap
3L	12153142	3L_12153142_SNP [dm3] 3L_12160042_SNP [dm6]	C	T	4.556e^-4	0.924	INTRON CG9760
X	15590998	X_15590998_SNP [dm3] X_15696965_SNP [dm6]	C	G	4.557e^-4	0.924	UPSTREAM CG8128 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	6494765	3L_6494765_SNP [dm3] 3L_6501665_SNP [dm6]	T	G	4.577e^-4	0.924	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
2L	18485744	2L_18485744_SNP [dm3] 2L_18485744_SNP [dm6]	G	A	4.582e^-4	0.924	UTR_5_PRIME CG10176	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_z mE1_TFBS_cad
2R	5105388	2R_5105388_SNP [dm3] 2R_9217883_SNP [dm6]	A	G	4.583e^-4	0.924	INTERGENIC
X	10963594	X_10963594_SNP [dm3] X_11069561_SNP [dm6]	G	A	4.609e^-4	0.924	INTERGENIC
3R	26704811	3R_26704811_SNP [dm3] 3R_30879089_SNP [dm6]	A	C	4.613e^-4	0.924	INTRON CG12071	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19895665	2L_19895665_INS [dm3] 2L_19895665_INS [dm6]	T	TTAG	4.625e^-4	0.924	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
2L	19615508	2L_19615508_SNP [dm3] 2L_19615508_SNP [dm6]	T	C	4.636e^-4	0.924	INTRON Lar
X	8110000	X_8110000_SNP [dm3] X_8215967_SNP [dm6]	A	C	4.644e^-4	0.924	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17661690	2R_17661690_SNP [dm3] 2R_21774185_SNP [dm6]	T	C	4.648e^-4	0.924	INTRON CG4021
3L	9611213	3L_9611213_SNP [dm3] 3L_9618113_SNP [dm6]	A	T	4.650e^-4	0.924	INTRON LanB2	TF binding site mE1_TFBS_cad
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	4.651e^-4	0.924	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5940691	3L_5940691_SNP [dm3] 3L_5947591_SNP [dm6]	T	G	4.658e^-4	0.924	INTRON CG33993	TF binding site mE1_TFBS_cad
2R	11735052	2R_11735052_SNP [dm3] 2R_15847547_SNP [dm6]	A	G	4.660e^-4	0.924	UPSTREAM CG8249 INTRON tun	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17759575	3R_17759575_SNP [dm3] 3R_21933853_SNP [dm6]	G	C	4.670e^-4	0.924	INTERGENIC
X	3458702	X_3458702_SNP [dm3] X_3564669_SNP [dm6]	C	T	4.672e^-4	0.924	INTRON CG32791 & 1 other
X	22225511	X_22225511_SNP [dm3] X_22823675_SNP [dm6]	A	T	4.673e^-4	0.924	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
3L	11000438	3L_11000438_SNP [dm3] 3L_11007338_SNP [dm6]	G	T	4.674e^-4	0.924	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	14687734	2R_14687734_SNP [dm3] 2R_18800229_SNP [dm6]	A	G	4.676e^-4	0.924	INTRON l_2_08717	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16710820	X_16710820_INS [dm3] X_16816787_INS [dm6]	T	TTTTTCAATTTCAAAATTCT...	4.677e^-4	0.924	UPSTREAM CG4829 & 1 other INTRON CG4829
2R	20357308	2R_20357308_SNP [dm3] 2R_24469785_SNP [dm6]	A	G	4.678e^-4	0.924	INTRON CG13579
3R	15639681	3R_15639681_SNP [dm3] 3R_19813959_SNP [dm6]	C	T	4.686e^-4	0.924	INTRON bnl
2R	15197832	2R_15197832_INS [dm3] 2R_19310327_INS [dm6]	T	TT	4.690e^-4	0.924	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
2R	9759654	2R_9759654_SNP [dm3] 2R_13872149_SNP [dm6]	C	T	4.698e^-4	0.924	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3R	15858408	3R_15858408_SNP [dm3] 3R_20032686_SNP [dm6]	G	C	4.701e^-4	0.924	SYNONYMOUS_CODING CG4936	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3693459	2L_3693459_SNP [dm3] 2L_3693459_SNP [dm6]	T	G	4.704e^-4	0.924	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 2 others
2R	10979968	2R_10979968_SNP [dm3] 2R_15092463_SNP [dm6]	G	A	4.708e^-4	0.924	DOWNSTREAM CR44457 INTERGENIC
3L	9139477	3L_9139477_SNP [dm3] 3L_9146377_SNP [dm6]	C	T	4.710e^-4	0.924	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi
2R	20177338	2R_20177338_SNP [dm3] 2R_24289815_SNP [dm6]	C	T	4.711e^-4	0.924	INTRON nvy	TF binding site mE1_TFBS_chinmo
X	22225337	X_22225337_SNP [dm3] X_22823501_SNP [dm6]	G	T	4.713e^-4	0.924	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
3L	10005907	3L_10005907_SNP [dm3] 3L_10012807_SNP [dm6]	T	C	4.717e^-4	0.924	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16727276	X_16727276_SNP [dm3] X_16833243_SNP [dm6]	C	G	4.721e^-4	0.924	INTRON CG13004
2L	1639524	2L_1639524_SNP [dm3] 2L_1639524_SNP [dm6]	C	T	4.723e^-4	0.924	INTERGENIC
2L	19912183	2L_19912183_SNP [dm3] 2L_19912183_SNP [dm6]	C	T	4.726e^-4	0.924	SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick
3L	2997212	3L_2997212_SNP [dm3] 3L_2997212_SNP [dm6]	A	G	4.740e^-4	0.924	INTERGENIC
3L	5816276	3L_5816276_SNP [dm3] 3L_5823176_SNP [dm6]	C	T	4.747e^-4	0.924	INTRON vn
X	22231406	X_22231406_SNP [dm3] X_22829570_SNP [dm6]	C	A	4.747e^-4	0.924	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	10170186	2L_10170186_SNP [dm3] 2L_10170186_SNP [dm6]	A	G	4.756e^-4	0.924	INTRON CG44153
2L	6020366	2L_6020366_INS [dm3] 2L_6020366_INS [dm6]	A	AG	4.756e^-4	0.924	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4813882	X_4813882_SNP [dm3] X_4919849_SNP [dm6]	A	C	4.760e^-4	0.924	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24485802	3R_24485802_SNP [dm3] 3R_28660080_SNP [dm6]	A	G	4.763e^-4	0.924	INTERGENIC
2R	19084942	2R_19084942_SNP [dm3] 2R_23197419_SNP [dm6]	C	T	4.766e^-4	0.924	INTRON CG34371	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21364539	X_21364539_SNP [dm3] X_21493512_SNP [dm6]	C	A	4.767e^-4	0.924	INTERGENIC
X	3601739	X_3601739_SNP [dm3] X_3707706_SNP [dm6]	G	T	4.777e^-4	0.924	INTRON Rala
2R	9883559	2R_9883559_SNP [dm3] 2R_13996054_SNP [dm6]	A	C	4.777e^-4	0.924	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17772545	3R_17772545_SNP [dm3] 3R_21946823_SNP [dm6]	G	T	4.782e^-4	0.924	INTERGENIC
3R	24100340	3R_24100340_SNP [dm3] 3R_28274618_SNP [dm6]	C	A	4.786e^-4	0.924	INTERGENIC
3R	7558137	3R_7558137_SNP [dm3] 3R_11732415_SNP [dm6]	T	G	4.786e^-4	0.924	UTR_3_PRIME CG12594
3R	15815824	3R_15815824_SNP [dm3] 3R_19990102_SNP [dm6]	A	C	4.798e^-4	0.924	INTRON Hs6st
2L	15210243	2L_15210243_SNP [dm3] 2L_15210243_SNP [dm6]	C	T	4.800e^-4	0.924	INTERGENIC
3R	18895214	3R_18895214_SNP [dm3] 3R_23069492_SNP [dm6]	G	T	4.801e^-4	0.924	INTERGENIC
X	15957988	X_15957988_SNP [dm3] X_16063955_SNP [dm6]	G	A	4.802e^-4	0.924	UTR_5_PRIME dpr18	TF binding site BDTNP1_TFBS_z mE1_TFBS_ttk
2R	14509033	2R_14509033_SNP [dm3] 2R_18621528_SNP [dm6]	G	A	4.811e^-4	0.924	UPSTREAM CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
X	19051836	X_19051836_SNP [dm3] X_19157803_SNP [dm6]	A	C	4.812e^-4	0.924	INTRON RhoGAP18B
2L	10266122	2L_10266122_SNP [dm3] 2L_10266122_SNP [dm6]	T	C	4.813e^-4	0.924	UPSTREAM CG4953 DOWNSTREAM CG18619 INTRON Mob3	TF binding site BDTNP1_TFBS_dl
2L	2401558	2L_2401558_SNP [dm3] 2L_2401558_SNP [dm6]	T	A	4.825e^-4	0.924	INTRON VGlut	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	14370697	3L_14370697_SNP [dm3] 3L_14377597_SNP [dm6]	G	A	4.825e^-4	0.924	INTERGENIC
3R	16328396	3R_16328396_SNP [dm3] 3R_20502674_SNP [dm6]	T	C	4.828e^-4	0.924	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
X	9999954	X_9999954_SNP [dm3] X_10105921_SNP [dm6]	A	G	4.837e^-4	0.925	INTRON RhoU	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10382548	2L_10382548_INS [dm3] 2L_10382548_INS [dm6]	C	CC	4.850e^-4	0.926	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
3L	15727578	3L_15727578_SNP [dm3] 3L_15734478_SNP [dm6]	G	T	4.860e^-4	0.927	INTERGENIC
2L	12444898	2L_12444898_INS [dm3] 2L_12444898_INS [dm6]	T	TC	4.864e^-4	0.927	INTRON Oatp33Ea	TF binding site BDTNP1_TFBS_da
2L	10036237	2L_10036237_SNP [dm3] 2L_10036237_SNP [dm6]	C	T	4.867e^-4	0.927	INTRON obst-B
3R	18320697	3R_18320697_INS [dm3] 3R_22494975_INS [dm6]	T	TAT	4.881e^-4	0.927	INTERGENIC
2R	20188513	2R_20188513_SNP [dm3] 2R_24300990_SNP [dm6]	C	A	4.881e^-4	0.927	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22234404	X_22234404_SNP [dm3] X_22832568_SNP [dm6]	A	C	4.890e^-4	0.927	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20392899	3R_20392899_SNP [dm3] 3R_24567177_SNP [dm6]	G	T	4.890e^-4	0.927	INTRON CG13624	TF binding site mE1_TFBS_cnc
3L	5140934	3L_5140934_SNP [dm3] 3L_5147834_SNP [dm6]	C	T	4.896e^-4	0.928	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6434492	2R_6434492_SNP [dm3] 2R_10546987_SNP [dm6]	A	G	4.923e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22989861	3R_22989861_SNP [dm3] 3R_27164139_SNP [dm6]	T	A	4.937e^-4	0.928	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG34293
X	21337147	X_21337147_SNP [dm3] X_21466120_SNP [dm6]	G	C	4.939e^-4	0.928	INTERGENIC
2L	11889747	2L_11889747_SNP [dm3] 2L_11889747_SNP [dm6]	T	A	4.940e^-4	0.928	INTRON Pde1c
X	3811692	X_3811692_SNP [dm3] X_3917659_SNP [dm6]	A	C	4.950e^-4	0.928	INTRON CG42541
2L	12126057	2L_12126057_SNP [dm3] 2L_12126057_SNP [dm6]	A	G	4.951e^-4	0.928	SYNONYMOUS_CODING CG17211
3R	14030650	3R_14030650_SNP [dm3] 3R_18204928_SNP [dm6]	C	T	4.963e^-4	0.928	INTRON CG7985
2L	7232232	2L_7232232_INS [dm3] 2L_7232232_INS [dm6]	G	GTAG	4.973e^-4	0.928	CODON_INSERTION CG43800 INTRON Ndae1
X	21336842	X_21336842_SNP [dm3] X_21465815_SNP [dm6]	A	C	4.973e^-4	0.928	INTERGENIC
X	3014599	X_3014599_SNP [dm3] X_3120566_SNP [dm6]	G	A	4.974e^-4	0.928	INTRON kirre	TF binding site mE1_TFBS_sbb
3L	8703857	3L_8703857_SNP [dm3] 3L_8710757_SNP [dm6]	A	T	4.994e^-4	0.928	INTERGENIC	regulatory region REDfly_CRMs

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.832e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1900 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	1.228e^-7	0.23	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19875610	2L_19875610_SNP [dm3] 2L_19875610_SNP [dm6]	G	T	2.511e^-6	0.968	INTRON sick	TF binding site mE1_TFBS_cad
2L	10147030	2L_10147030_SNP [dm3] 2L_10147030_SNP [dm6]	G	C	5.574e^-6	0.968	UTR_5_PRIME CG4839 INTRON CG44153	TF binding site mE1_TFBS_cad
3L	10846870	3L_10846870_SNP [dm3] 3L_10853770_SNP [dm6]	C	G	7.601e^-6	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	11869672	3R_11869672_SNP [dm3] 3R_16043950_SNP [dm6]	C	T	8.214e^-6	0.968	DOWNSTREAM CG10407 INTRON CG10264
3R	11869950	3R_11869950_SNP [dm3] 3R_16044228_SNP [dm6]	G	A	1.027e^-5	0.968	DOWNSTREAM CG10407 INTRON CG10264
2L	19900928	2L_19900928_SNP [dm3] 2L_19900928_SNP [dm6]	G	A	1.220e^-5	0.968	INTRON sick
3R	10901252	3R_10901252_SNP [dm3] 3R_15075530_SNP [dm6]	T	A	1.331e^-5	0.968	INTRON dpr9
3L	10833851	3L_10833851_SNP [dm3] 3L_10840751_SNP [dm6]	G	A	1.353e^-5	0.968	INTERGENIC
2R	12114526	2R_12114526_SNP [dm3] 2R_16227021_SNP [dm6]	C	T	1.464e^-5	0.968	UPSTREAM CG15706 INTRON CG15706 & 1 other
2L	19916000	2L_19916000_SNP [dm3] 2L_19916000_SNP [dm6]	A	C	1.526e^-5	0.968	INTRON sick
3L	8694665	3L_8694665_SNP [dm3] 3L_8701565_SNP [dm6]	A	G	1.533e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16130617	2R_16130617_SNP [dm3] 2R_20243112_SNP [dm6]	G	T	1.538e^-5	0.968	DOWNSTREAM Efhc1.2 INTRON CG11208	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	1.604e^-5	0.968	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11869555	3R_11869555_SNP [dm3] 3R_16043833_SNP [dm6]	A	T	1.637e^-5	0.968	DOWNSTREAM CG10407 INTRON CG10264
2R	6259451	2R_6259451_SNP [dm3] 2R_10371946_SNP [dm6]	A	G	1.655e^-5	0.968	INTRON CG42732	TF binding site mE1_TFBS_inv
3L	1748494	3L_1748494_SNP [dm3] 3L_1748494_SNP [dm6]	G	A	1.729e^-5	0.968	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	1.966e^-5	0.968	UPSTREAM CG33998 INTRON Hs3st-A
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	1.978e^-5	0.968	INTRON pgant2
3L	5751724	3L_5751724_SNP [dm3] 3L_5758624_SNP [dm6]	A	T	2.003e^-5	0.968	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14348501	X_14348501_SNP [dm3] X_14454468_SNP [dm6]	G	A	2.107e^-5	0.968	INTRON dpr8
2L	19916065	2L_19916065_DEL [dm3] 2L_19916065_DEL [dm6]	TTAAGT	T	2.230e^-5	0.968	INTRON sick
2R	11851353	2R_11851353_SNP [dm3] 2R_15963848_SNP [dm6]	T	G	2.377e^-5	0.968	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12185274	2L_12185274_SNP [dm3] 2L_12185274_SNP [dm6]	C	A	2.595e^-5	0.968	INTRON aret
2R	3779323	2R_3779323_INS [dm3] 2R_7891818_INS [dm6]	G	GAATGAACGTCTGCG...	2.647e^-5	0.968	INTRON CG30377
2L	19885070	2L_19885070_SNP [dm3] 2L_19885070_SNP [dm6]	A	T	2.658e^-5	0.968	INTRON sick
3L	10846975	3L_10846975_SNP [dm3] 3L_10853875_SNP [dm6]	T	A	2.760e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	15191981	3R_15191981_SNP [dm3] 3R_19366259_SNP [dm6]	G	A	2.820e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19883397	2L_19883397_SNP [dm3] 2L_19883397_SNP [dm6]	C	T	2.837e^-5	0.968	INTRON sick
3L	4099309	3L_4099309_DEL [dm3] 3L_4099309_DEL [dm6]	GCAGACTTCTAT...	G	2.891e^-5	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	12521556	3L_12521556_SNP [dm3] 3L_12528456_SNP [dm6]	A	G	2.909e^-5	0.968	SYNONYMOUS_CODING nst	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13890960	2L_13890960_SNP [dm3] 2L_13890960_SNP [dm6]	C	T	2.949e^-5	0.968	INTRON CenG1A	TF binding site mE1_TFBS_HSA
3R	14906287	3R_14906287_SNP [dm3] 3R_19080565_SNP [dm6]	C	A	2.988e^-5	0.968	INTRON cdi	TF binding site BDTNP1_TFBS_twi
2R	6197205	2R_6197205_SNP [dm3] 2R_10309700_SNP [dm6]	A	T	3.108e^-5	0.968	UTR_5_PRIME JhI-1 UPSTREAM CG12909	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5751707	3L_5751707_SNP [dm3] 3L_5758607_SNP [dm6]	A	C	3.140e^-5	0.968	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6500516	3L_6500516_SNP [dm3] 3L_6507416_SNP [dm6]	G	A	3.194e^-5	0.968	INTRON sfl
3L	10833872	3L_10833872_SNP [dm3] 3L_10840772_SNP [dm6]	G	C	3.200e^-5	0.968	INTERGENIC
3L	6499976	3L_6499976_SNP [dm3] 3L_6506876_SNP [dm6]	C	T	3.279e^-5	0.968	INTRON sfl
2L	1399201	2L_1399201_SNP [dm3] 2L_1399201_SNP [dm6]	G	A	3.317e^-5	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	21867110	X_21867110_SNP [dm3] X_22465274_SNP [dm6]	A	G	3.393e^-5	0.968	NON_SYNONYMOUS_CODING CG14619 INTRON CG14619
3R	19073296	3R_19073296_SNP [dm3] 3R_23247574_SNP [dm6]	C	G	3.401e^-5	0.968	INTRON CG4467
3L	6689709	3L_6689709_SNP [dm3] 3L_6696609_SNP [dm6]	A	G	3.418e^-5	0.968	INTRON SP1173
3L	21055545	3L_21055545_SNP [dm3] 3L_21062445_SNP [dm6]	C	T	3.450e^-5	0.968	INTRON siz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1399203	2L_1399203_SNP [dm3] 2L_1399203_SNP [dm6]	A	T	3.491e^-5	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	6684864	3L_6684864_SNP [dm3] 3L_6691764_SNP [dm6]	C	A	3.510e^-5	0.968	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	3.516e^-5	0.968	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6141472	2R_6141472_SNP [dm3] 2R_10253967_SNP [dm6]	C	T	3.569e^-5	0.968	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1399138	2L_1399138_SNP [dm3] 2L_1399138_SNP [dm6]	A	G	3.573e^-5	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	5752808	3L_5752808_SNP [dm3] 3L_5759708_SNP [dm6]	A	G	3.575e^-5	0.968	NON_SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	2363255	X_2363255_SNP [dm3] X_2469222_SNP [dm6]	T	C	3.638e^-5	0.968	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10082998	X_10082998_SNP [dm3] X_10188965_SNP [dm6]	C	G	3.675e^-5	0.968	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	3.711e^-5	0.968	INTRON sick	TF binding site mE1_TFBS_cad
X	21464154	X_21464154_SNP [dm3] X_21593127_SNP [dm6]	C	A	3.842e^-5	0.968	INTERGENIC
2L	19915691	2L_19915691_SNP [dm3] 2L_19915691_SNP [dm6]	T	C	3.882e^-5	0.968	INTRON sick	TF binding site mE1_TFBS_bab1
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	4.014e^-5	0.968	INTRON sfl
2L	18654553	2L_18654553_SNP [dm3] 2L_18654553_SNP [dm6]	C	G	4.148e^-5	0.968	INTRON MESR3	TF binding site mE1_TFBS_cnc
2L	19916044	2L_19916044_SNP [dm3] 2L_19916044_SNP [dm6]	A	T	4.149e^-5	0.968	INTRON sick
X	9494323	X_9494323_SNP [dm3] X_9600290_SNP [dm6]	A	G	4.182e^-5	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	4.290e^-5	0.968	INTRON bnl
2L	1642528	2L_1642528_SNP [dm3] 2L_1642528_SNP [dm6]	A	T	4.443e^-5	0.968	INTERGENIC
2R	14497037	2R_14497037_SNP [dm3] 2R_18609532_SNP [dm6]	T	A	4.607e^-5	0.968	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	4.684e^-5	0.968	SYNONYMOUS_CODING SP1173
3L	12026358	3L_12026358_SNP [dm3] 3L_12033258_SNP [dm6]	G	C	4.690e^-5	0.968	DOWNSTREAM CG43993 INTRON rols
2L	20772158	2L_20772158_SNP [dm3] 2L_20772158_SNP [dm6]	G	A	4.692e^-5	0.968	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20350052	X_20350052_SNP [dm3] X_20479025_SNP [dm6]	T	C	4.726e^-5	0.968	INTRON RhoGAP19D
2L	3195457	2L_3195457_SNP [dm3] 2L_3195457_SNP [dm6]	G	A	4.779e^-5	0.968	INTRON CG34393
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	4.854e^-5	0.968	INTRON phl & 1 other
X	19428888	X_19428888_SNP [dm3] X_19534855_SNP [dm6]	T	C	4.987e^-5	0.968	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	5.126e^-5	0.968	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	11336444	3L_11336444_INS [dm3] 3L_11343344_INS [dm6]	T	TGAGAATATTAATCTTT...	5.134e^-5	0.968	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	18878687	3R_18878687_SNP [dm3] 3R_23052965_SNP [dm6]	T	A	5.198e^-5	0.968	DOWNSTREAM Gr94a INTRON p53	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16726678	3L_16726678_SNP [dm3] 3L_16733578_SNP [dm6]	T	C	5.210e^-5	0.968	UTR_5_PRIME CG9701
3R	13851036	3R_13851036_SNP [dm3] 3R_18025314_SNP [dm6]	C	G	5.327e^-5	0.968	UTR_3_PRIME CG7794
2L	19907138	2L_19907138_SNP [dm3] 2L_19907138_SNP [dm6]	G	T	5.349e^-5	0.968	INTRON sick
2L	10207344	2L_10207344_SNP [dm3] 2L_10207344_SNP [dm6]	T	A	5.410e^-5	0.968	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
2L	3195300	2L_3195300_SNP [dm3] 2L_3195300_SNP [dm6]	G	C	5.415e^-5	0.968	INTRON CG34393
2L	3195342	2L_3195342_SNP [dm3] 2L_3195342_SNP [dm6]	G	A	5.415e^-5	0.968	INTRON CG34393
2L	3195343	2L_3195343_SNP [dm3] 2L_3195343_SNP [dm6]	A	G	5.415e^-5	0.968	INTRON CG34393
2L	11611756	2L_11611756_SNP [dm3] 2L_11611756_SNP [dm6]	G	A	5.450e^-5	0.968	UTR_5_PRIME spag4 INTRON kek2
X	19113735	X_19113735_SNP [dm3] X_19219702_SNP [dm6]	A	G	5.494e^-5	0.968	UPSTREAM CG7884 INTERGENIC
3L	11927747	3L_11927747_SNP [dm3] 3L_11934647_SNP [dm6]	T	G	5.567e^-5	0.968	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	10258902	3L_10258902_SNP [dm3] 3L_10265802_SNP [dm6]	T	A	5.627e^-5	0.968	SYNONYMOUS_CODING can
2L	1397508	2L_1397508_INS [dm3] 2L_1397508_INS [dm6]	C	CCCTTGGACC	5.631e^-5	0.968	INTRON lea	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	11927715	3L_11927715_SNP [dm3] 3L_11934615_SNP [dm6]	A	G	5.659e^-5	0.968	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	18257971	3R_18257971_SNP [dm3] 3R_22432249_SNP [dm6]	A	G	5.675e^-5	0.968	INTRON CG13847
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	5.704e^-5	0.968	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	5.716e^-5	0.968	INTRON tn
3R	22479458	3R_22479458_SNP [dm3] 3R_26653736_SNP [dm6]	C	T	5.828e^-5	0.968	INTRON beat-VII
2L	3195345	2L_3195345_SNP [dm3] 2L_3195345_SNP [dm6]	A	C	5.841e^-5	0.968	INTRON CG34393
2L	1752712	2L_1752712_SNP [dm3] 2L_1752712_SNP [dm6]	C	T	5.843e^-5	0.968	SYNONYMOUS_CODING CG17648 UPSTREAM CG17712	TF binding site BDTNP1_TFBS_twi
2L	1405890	2L_1405890_DEL [dm3] 2L_1405890_DEL [dm6]	CTGAGC	C	5.846e^-5	0.968	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12340547	2L_12340547_SNP [dm3] 2L_12340547_SNP [dm6]	T	G	5.891e^-5	0.968	INTERGENIC
3R	19073290	3R_19073290_SNP [dm3] 3R_23247568_SNP [dm6]	A	T	5.995e^-5	0.968	INTRON CG4467
3L	10258907	3L_10258907_SNP [dm3] 3L_10265807_SNP [dm6]	T	C	6.129e^-5	0.968	NON_SYNONYMOUS_CODING can
3L	1360326	3L_1360326_DEL [dm3] 3L_1360326_DEL [dm6]	GTG	G	6.204e^-5	0.968	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14497053	2R_14497053_SNP [dm3] 2R_18609548_SNP [dm6]	C	G	6.278e^-5	0.968	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
3L	6677791	3L_6677791_SNP [dm3] 3L_6684691_SNP [dm6]	G	T	6.329e^-5	0.968	INTERGENIC
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	6.396e^-5	0.968	INTRON dlg1	TF binding site mE1_TFBS_HSA
2R	9559975	2R_9559975_SNP [dm3] 2R_13672470_SNP [dm6]	G	C	6.431e^-5	0.968	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	6.575e^-5	0.968	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2L	19916115	2L_19916115_SNP [dm3] 2L_19916115_SNP [dm6]	A	G	6.610e^-5	0.968	INTRON sick
3R	8931146	3R_8931146_SNP [dm3] 3R_13105424_SNP [dm6]	A	G	6.630e^-5	0.968	INTRON timeout
2L	20135409	2L_20135409_SNP [dm3] 2L_20135409_SNP [dm6]	T	A	6.653e^-5	0.968	UPSTREAM CG10651 INTERGENIC
3L	4099177	3L_4099177_DEL [dm3] 3L_4099177_DEL [dm6]	CACTACTCCAC...	C	6.720e^-5	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	13939800	3R_13939800_DEL [dm3] 3R_18114078_DEL [dm6]	GG	G	6.760e^-5	0.968	INTRON sr
2R	6682162	2R_6682162_DEL [dm3] 2R_10794657_DEL [dm6]	ACTAAAA	A	6.817e^-5	0.968	INTRON CG33144
2R	7467110	2R_7467110_SNP [dm3] 2R_11579605_SNP [dm6]	T	C	6.915e^-5	0.968	UTR_3_PRIME tou
2R	7467114	2R_7467114_SNP [dm3] 2R_11579609_SNP [dm6]	A	T	6.915e^-5	0.968	UTR_3_PRIME tou
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	7.101e^-5	0.968	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	18769097	3R_18769097_SNP [dm3] 3R_22943375_SNP [dm6]	A	G	7.187e^-5	0.968	INTRON klg
3L	3126741	3L_3126741_SNP [dm3] 3L_3126741_SNP [dm6]	G	A	7.198e^-5	0.968	INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16454405	2R_16454405_SNP [dm3] 2R_20566900_SNP [dm6]	T	G	7.248e^-5	0.968	INTRON qsm
2R	13184167	2R_13184167_SNP [dm3] 2R_17296662_SNP [dm6]	A	T	7.300e^-5	0.968	INTRON mbl
3L	20198791	3L_20198791_SNP [dm3] 3L_20205691_SNP [dm6]	C	T	7.300e^-5	0.968	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10902280	3R_10902280_SNP [dm3] 3R_15076558_SNP [dm6]	T	C	7.316e^-5	0.968	INTRON dpr9
3R	7159509	3R_7159509_SNP [dm3] 3R_11333787_SNP [dm6]	A	T	7.395e^-5	0.968	INTRON pros
2R	14434210	2R_14434210_SNP [dm3] 2R_18546705_SNP [dm6]	A	G	7.420e^-5	0.968	INTRON Rgk2
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	7.472e^-5	0.968	UPSTREAM Mlp60A INTERGENIC
2R	18707122	2R_18707122_SNP [dm3] 2R_22819617_SNP [dm6]	C	G	7.476e^-5	0.968	INTRON CG30271	TF binding site mE1_TFBS_chinmo
3L	10833191	3L_10833191_SNP [dm3] 3L_10840091_SNP [dm6]	G	A	7.476e^-5	0.968	INTERGENIC
2L	19952699	2L_19952699_SNP [dm3] 2L_19952699_SNP [dm6]	A	T	7.486e^-5	0.968	INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	19883637	2R_19883637_SNP [dm3] 2R_23996114_SNP [dm6]	T	C	7.628e^-5	0.968	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	7.708e^-5	0.968	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
2R	5139179	2R_5139179_SNP [dm3] 2R_9251674_SNP [dm6]	C	T	7.802e^-5	0.968	UPSTREAM CG30343 DOWNSTREAM Pkn INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2R	6606616	2R_6606616_SNP [dm3] 2R_10719111_SNP [dm6]	G	A	7.852e^-5	0.968	DOWNSTREAM stan INTRON stan
3L	18180510	3L_18180510_SNP [dm3] 3L_18187410_SNP [dm6]	C	T	7.884e^-5	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	12699587	X_12699587_SNP [dm3] X_12805554_SNP [dm6]	C	T	8.024e^-5	0.968	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
2R	20357891	2R_20357891_SNP [dm3] 2R_24470368_SNP [dm6]	G	T	8.024e^-5	0.968	INTRON CG13579
3R	14723433	3R_14723433_SNP [dm3] 3R_18897711_SNP [dm6]	C	T	8.099e^-5	0.968	UPSTREAM CG14297 INTERGENIC
2L	19916055	2L_19916055_SNP [dm3] 2L_19916055_SNP [dm6]	T	A	8.112e^-5	0.968	INTRON sick
X	21437608	X_21437608_SNP [dm3] X_21566581_SNP [dm6]	A	G	8.122e^-5	0.968	INTERGENIC
3R	25718466	3R_25718466_SNP [dm3] 3R_29892744_SNP [dm6]	T	C	8.182e^-5	0.968	INTRON CG31038
3L	8640168	3L_8640168_SNP [dm3] 3L_8647068_SNP [dm6]	C	T	8.206e^-5	0.968	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6036815	2L_6036815_SNP [dm3] 2L_6036815_SNP [dm6]	C	G	8.237e^-5	0.968	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6036816	2L_6036816_SNP [dm3] 2L_6036816_SNP [dm6]	G	A	8.237e^-5	0.968	START_GAINED mtm UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	8.266e^-5	0.968	INTRON CG3961
2L	10828283	2L_10828283_SNP [dm3] 2L_10828283_SNP [dm6]	A	G	8.296e^-5	0.968	INTRON Nos
3L	8644964	3L_8644964_SNP [dm3] 3L_8651864_SNP [dm6]	A	T	8.308e^-5	0.968	DOWNSTREAM Pex7 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4176822	3L_4176822_SNP [dm3] 3L_4176822_SNP [dm6]	C	T	8.406e^-5	0.968	INTRON CG18675 & 1 other
3L	4176830	3L_4176830_SNP [dm3] 3L_4176830_SNP [dm6]	G	C	8.406e^-5	0.968	INTRON CG18675 & 1 other
3L	14618651	3L_14618651_SNP [dm3] 3L_14625551_SNP [dm6]	T	C	8.639e^-5	0.968	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	8.718e^-5	0.968	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6036812	2L_6036812_SNP [dm3] 2L_6036812_SNP [dm6]	T	G	8.736e^-5	0.968	UTR_5_PRIME mtm DOWNSTREAM CG9117	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	8.825e^-5	0.968	INTRON sfl
2R	4526988	2R_4526988_SNP [dm3] 2R_8639483_SNP [dm6]	C	T	8.993e^-5	0.968	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	4099244	3L_4099244_SNP [dm3] 3L_4099244_SNP [dm6]	C	A	9.110e^-5	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	15405960	3R_15405960_SNP [dm3] 3R_19580238_SNP [dm6]	C	T	9.116e^-5	0.968	INTRON Dys
X	21434132	X_21434132_DEL [dm3] X_21563105_DEL [dm6]	CTTGGGCAAC	C	9.119e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11600107	3R_11600107_SNP [dm3] 3R_15774385_SNP [dm6]	G	A	9.129e^-5	0.968	UPSTREAM CG4525 DOWNSTREAM CR45207 EXON CR45206
3L	3987017	3L_3987017_SNP [dm3] 3L_3987017_SNP [dm6]	C	G	9.144e^-5	0.968	NON_SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21373374	X_21373374_SNP [dm3] X_21502347_SNP [dm6]	A	G	9.149e^-5	0.968	INTRON CR45082
3L	6669287	3L_6669287_SNP [dm3] 3L_6676187_SNP [dm6]	C	A	9.185e^-5	0.968	INTERGENIC
2R	17648368	2R_17648368_SNP [dm3] 2R_21760863_SNP [dm6]	C	A	9.203e^-5	0.968	INTERGENIC
3R	26413592	3R_26413592_SNP [dm3] 3R_30587870_SNP [dm6]	C	A	9.299e^-5	0.968	UPSTREAM CG9717 INTERGENIC
3L	10836603	3L_10836603_SNP [dm3] 3L_10843503_SNP [dm6]	A	T	9.440e^-5	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20392711	3R_20392711_SNP [dm3] 3R_24566989_SNP [dm6]	C	G	9.518e^-5	0.968	INTRON CG13624	TF binding site mE1_TFBS_Trl
2L	19884879	2L_19884879_SNP [dm3] 2L_19884879_SNP [dm6]	T	C	9.525e^-5	0.968	INTRON sick
3L	10876032	3L_10876032_SNP [dm3] 3L_10882932_SNP [dm6]	T	C	9.528e^-5	0.968	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	18012430	2R_18012430_SNP [dm3] 2R_22124925_SNP [dm6]	C	T	9.556e^-5	0.968	SYNONYMOUS_CODING GM130 DOWNSTREAM mei-S332	TF binding site mE1_TFBS_cad
X	21942750	X_21942750_SNP [dm3] X_22540914_SNP [dm6]	T	C	9.568e^-5	0.968	UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22278588	3R_22278588_SNP [dm3] 3R_26452866_SNP [dm6]	C	T	9.883e^-5	0.968	SYNONYMOUS_CODING CG5447 DOWNSTREAM Hex-t2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3105029	X_3105029_SNP [dm3] X_3210996_SNP [dm6]	A	T	9.917e^-5	0.968	INTRON dnc
3L	10836679	3L_10836679_SNP [dm3] 3L_10843579_SNP [dm6]	C	T	9.957e^-5	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11845496	2R_11845496_SNP [dm3] 2R_15957991_SNP [dm6]	T	C	1.003e^-4	0.968	SPLICE_SITE_REGION Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11396991	2R_11396991_SNP [dm3] 2R_15509486_SNP [dm6]	G	T	1.009e^-4	0.968	INTERGENIC
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	1.014e^-4	0.968	INTRON caps
3L	12125004	3L_12125004_SNP [dm3] 3L_12131904_SNP [dm6]	T	A	1.033e^-4	0.968	UPSTREAM CG11534 DOWNSTREAM Lsp2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	15826545	3R_15826545_SNP [dm3] 3R_20000823_SNP [dm6]	C	A	1.033e^-4	0.968	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2L	12579710	2L_12579710_SNP [dm3] 2L_12579710_SNP [dm6]	A	G	1.039e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	17681875	3R_17681875_SNP [dm3] 3R_21856153_SNP [dm6]	A	T	1.040e^-4	0.968	UTR_5_PRIME glec	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21463399	X_21463399_DEL [dm3] X_21592372_DEL [dm6]	AA	A	1.042e^-4	0.968	INTERGENIC
2L	2892703	2L_2892703_SNP [dm3] 2L_2892703_SNP [dm6]	G	C	1.043e^-4	0.968	INTRON lilli	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10876047	3L_10876047_SNP [dm3] 3L_10882947_SNP [dm6]	A	G	1.043e^-4	0.968	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	19097307	3R_19097307_SNP [dm3] 3R_23271585_SNP [dm6]	G	A	1.049e^-4	0.968	INTRON orb
X	8192518	X_8192518_SNP [dm3] X_8298485_SNP [dm6]	G	A	1.052e^-4	0.968	INTRON nAChRalpha3
2L	12230552	2L_12230552_DEL [dm3] 2L_12230552_DEL [dm6]	ATAA	A	1.052e^-4	0.968	INTRON aret
2L	9995297	2L_9995297_SNP [dm3] 2L_9995297_SNP [dm6]	C	A	1.053e^-4	0.968	UTR_3_PRIME bib DOWNSTREAM CG31875
2L	1721660	2L_1721660_SNP [dm3] 2L_1721660_SNP [dm6]	C	A	1.068e^-4	0.968	INTRON Rim2
2R	19210551	2R_19210551_SNP [dm3] 2R_23323028_SNP [dm6]	A	G	1.070e^-4	0.968	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	1.071e^-4	0.968	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	1.071e^-4	0.968	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	1.071e^-4	0.968	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10836598	3L_10836598_SNP [dm3] 3L_10843498_SNP [dm6]	T	G	1.077e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15468873	3R_15468873_SNP [dm3] 3R_19643151_SNP [dm6]	A	T	1.079e^-4	0.968	UTR_3_PRIME Vha13 UPSTREAM subdued DOWNSTREAM Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20392709	3R_20392709_SNP [dm3] 3R_24566987_SNP [dm6]	G	C	1.082e^-4	0.968	INTRON CG13624	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1778759	2R_1778759_SNP [dm3] 2R_5891254_SNP [dm6]	T	C	1.093e^-4	0.968	INTERGENIC
2R	17661690	2R_17661690_SNP [dm3] 2R_21774185_SNP [dm6]	T	C	1.093e^-4	0.968	INTRON CG4021
3R	18833804	3R_18833804_SNP [dm3] 3R_23008082_SNP [dm6]	C	T	1.098e^-4	0.968	NON_SYNONYMOUS_CODING CG34375	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19674006	2L_19674006_SNP [dm3] 2L_19674006_SNP [dm6]	C	T	1.100e^-4	0.968	INTRON Lar
X	20867976	X_20867976_SNP [dm3] X_20996949_SNP [dm6]	A	T	1.101e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1141786	2L_1141786_INS [dm3] 2L_1141786_INS [dm6]	G	GCTG	1.108e^-4	0.968	DOWNSTREAM CG4577 INTERGENIC
3L	6684711	3L_6684711_SNP [dm3] 3L_6691611_SNP [dm6]	C	T	1.109e^-4	0.968	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad
3R	15845335	3R_15845335_SNP [dm3] 3R_20019613_SNP [dm6]	T	C	1.111e^-4	0.968	SYNONYMOUS_CODING CG4433
3R	17749973	3R_17749973_SNP [dm3] 3R_21924251_SNP [dm6]	A	G	1.114e^-4	0.968	INTERGENIC
3R	15826546	3R_15826546_SNP [dm3] 3R_20000824_SNP [dm6]	C	T	1.115e^-4	0.968	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
2R	16436093	2R_16436093_SNP [dm3] 2R_20548588_SNP [dm6]	T	A	1.133e^-4	0.968	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
3L	6497513	3L_6497513_SNP [dm3] 3L_6504413_SNP [dm6]	G	A	1.138e^-4	0.968	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	4099237	3L_4099237_SNP [dm3] 3L_4099237_SNP [dm6]	T	C	1.139e^-4	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	9782937	2L_9782937_SNP [dm3] 2L_9782937_SNP [dm6]	C	T	1.142e^-4	0.968	SYNONYMOUS_CODING IP3K1	TF binding site mE1_TFBS_sens mE1_TFBS_Trl
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	1.149e^-4	0.968	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	1399102	2L_1399102_SNP [dm3] 2L_1399102_SNP [dm6]	C	T	1.153e^-4	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10876055	3L_10876055_SNP [dm3] 3L_10882955_SNP [dm6]	A	T	1.158e^-4	0.968	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	17765423	3R_17765423_SNP [dm3] 3R_21939701_SNP [dm6]	T	A	1.159e^-4	0.968	INTERGENIC
2L	15042008	2L_15042008_SNP [dm3] 2L_15042008_SNP [dm6]	A	G	1.159e^-4	0.968	INTRON Su_H_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	1.163e^-4	0.968	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
3L	1451398	3L_1451398_SNP [dm3] 3L_1451398_SNP [dm6]	G	T	1.164e^-4	0.968	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
2R	17132151	2R_17132151_SNP [dm3] 2R_21244646_SNP [dm6]	G	A	1.166e^-4	0.968	INTRON ASPP
3L	7123327	3L_7123327_SNP [dm3] 3L_7130227_SNP [dm6]	T	C	1.187e^-4	0.968	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	19858618	3R_19858618_SNP [dm3] 3R_24032896_SNP [dm6]	A	G	1.189e^-4	0.968	SYNONYMOUS_CODING Ime4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	6503400	3L_6503400_SNP [dm3] 3L_6510300_SNP [dm6]	G	C	1.198e^-4	0.968	INTRON sfl
2R	7466253	2R_7466253_SNP [dm3] 2R_11578748_SNP [dm6]	T	G	1.202e^-4	0.968	UTR_3_PRIME tou DOWNSTREAM tou
2R	7508653	2R_7508653_SNP [dm3] 2R_11621148_SNP [dm6]	C	T	1.204e^-4	0.968	SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6668923	3L_6668923_SNP [dm3] 3L_6675823_SNP [dm6]	A	C	1.214e^-4	0.968	INTERGENIC
3R	19137326	3R_19137326_SNP [dm3] 3R_23311604_SNP [dm6]	C	A	1.217e^-4	0.968	INTRON pnt
X	9909741	X_9909741_SNP [dm3] X_10015708_SNP [dm6]	T	A	1.220e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	19888590	2R_19888590_SNP [dm3] 2R_24001067_SNP [dm6]	G	A	1.226e^-4	0.968	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10836575	3L_10836575_SNP [dm3] 3L_10843475_SNP [dm6]	T	A	1.228e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16436095	2R_16436095_SNP [dm3] 2R_20548590_SNP [dm6]	A	T	1.233e^-4	0.968	UTR_3_PRIME Obp57d & 1 other UPSTREAM CG30148 & 1 other DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
X	14348406	X_14348406_SNP [dm3] X_14454373_SNP [dm6]	T	G	1.234e^-4	0.968	INTRON dpr8
3L	4099245	3L_4099245_SNP [dm3] 3L_4099245_SNP [dm6]	A	T	1.239e^-4	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	11851881	2R_11851881_SNP [dm3] 2R_15964376_SNP [dm6]	G	A	1.251e^-4	0.968	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11853168	2R_11853168_SNP [dm3] 2R_15965663_SNP [dm6]	C	A	1.251e^-4	0.968	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4530248	3L_4530248_SNP [dm3] 3L_4530248_SNP [dm6]	C	T	1.255e^-4	0.968	INTRON Tie	TF binding site mE1_TFBS_inv
3L	13627812	3L_13627812_DEL [dm3] 3L_13634712_DEL [dm6]	AGTGGC	A	1.264e^-4	0.968	INTRON bru-3	TF binding site BDTNP1_TFBS_hb
3R	22479613	3R_22479613_SNP [dm3] 3R_26653891_SNP [dm6]	G	T	1.265e^-4	0.968	INTRON beat-VII
2L	6320972	2L_6320972_SNP [dm3] 2L_6320972_SNP [dm6]	C	G	1.266e^-4	0.968	INTRON Ddr
3R	15191911	3R_15191911_SNP [dm3] 3R_19366189_SNP [dm6]	T	C	1.284e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	20041195	2L_20041195_SNP [dm3] 2L_20041195_SNP [dm6]	T	C	1.286e^-4	0.968	INTRON sNPF
3R	16004116	3R_16004116_INS [dm3] 3R_20178394_INS [dm6]	C	CTGGATCCTC	1.286e^-4	0.968	INTERGENIC
3L	14617380	3L_14617380_SNP [dm3] 3L_14624280_SNP [dm6]	T	C	1.300e^-4	0.968	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14602906	3R_14602906_SNP [dm3] 3R_18777184_SNP [dm6]	A	C	1.308e^-4	0.968	INTRON CG7720
3L	10836693	3L_10836693_SNP [dm3] 3L_10843593_SNP [dm6]	A	T	1.312e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1641557	2L_1641557_SNP [dm3] 2L_1641557_SNP [dm6]	A	G	1.319e^-4	0.968	INTERGENIC
3L	1267420	3L_1267420_SNP [dm3] 3L_1267420_SNP [dm6]	T	C	1.320e^-4	0.968	INTRON CG9134
3R	17075934	3R_17075934_SNP [dm3] 3R_21250212_SNP [dm6]	G	C	1.353e^-4	0.968	INTRON ETHR
3R	13357591	3R_13357591_SNP [dm3] 3R_17531869_SNP [dm6]	A	G	1.366e^-4	0.968	DOWNSTREAM CG5823 INTERGENIC
3L	18323720	3L_18323720_SNP [dm3] 3L_18330620_SNP [dm6]	T	G	1.371e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	6196416	2R_6196416_SNP [dm3] 2R_10308911_SNP [dm6]	G	T	1.372e^-4	0.968	SYNONYMOUS_CODING JhI-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	1.386e^-4	0.968	INTRON sfl
3R	19097268	3R_19097268_SNP [dm3] 3R_23271546_SNP [dm6]	C	T	1.390e^-4	0.968	INTRON orb
2R	13441202	2R_13441202_SNP [dm3] 2R_17553697_SNP [dm6]	C	G	1.393e^-4	0.968	NON_SYNONYMOUS_CODING MESR4
3L	10836577	3L_10836577_DEL [dm3] 3L_10843477_DEL [dm6]	TTGTC	AGA	1.402e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10846857	3L_10846857_SNP [dm3] 3L_10853757_SNP [dm6]	T	C	1.412e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	8130742	3L_8130742_SNP [dm3] 3L_8137642_SNP [dm6]	T	C	1.418e^-4	0.968	UPSTREAM mus301 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6669220	3L_6669220_SNP [dm3] 3L_6676120_SNP [dm6]	T	A	1.427e^-4	0.968	INTERGENIC
2R	6606946	2R_6606946_INS [dm3] 2R_10719441_INS [dm6]	CCC	ATTTAA	1.444e^-4	0.968	INTRON stan
3L	2662801	3L_2662801_SNP [dm3] 3L_2662801_SNP [dm6]	A	C	1.445e^-4	0.968	INTRON Fife & 1 other
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	1.452e^-4	0.968	INTERGENIC
3R	19073184	3R_19073184_SNP [dm3] 3R_23247462_SNP [dm6]	G	A	1.459e^-4	0.968	INTRON CG4467
2L	3483667	2L_3483667_SNP [dm3] 2L_3483667_SNP [dm6]	C	A	1.461e^-4	0.968	INTRON CG15414
3L	8634373	3L_8634373_SNP [dm3] 3L_8641273_SNP [dm6]	T	A	1.468e^-4	0.968	INTRON Cpr66D
3R	26640119	3R_26640119_INS [dm3] 3R_30814397_INS [dm6]	G	GG	1.474e^-4	0.968	INTRON cindr	TF binding site BDTNP1_TFBS_twi
3R	16759911	3R_16759911_SNP [dm3] 3R_20934189_SNP [dm6]	T	A	1.480e^-4	0.968	INTRON CG31191
3R	8604036	3R_8604036_SNP [dm3] 3R_12778314_SNP [dm6]	C	T	1.485e^-4	0.968	UTR_5_PRIME beat-Vc
2L	8682482	2L_8682482_SNP [dm3] 2L_8682482_SNP [dm6]	G	A	1.501e^-4	0.968	SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
3L	8638992	3L_8638992_SNP [dm3] 3L_8645892_SNP [dm6]	G	C	1.507e^-4	0.968	SPLICE_SITE_REGION CG13305 SYNONYMOUS_CODING CG13305 INTRON CG13305	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14723455	3R_14723455_SNP [dm3] 3R_18897733_SNP [dm6]	C	T	1.516e^-4	0.968	UPSTREAM CG14297 INTERGENIC
X	9494293	X_9494293_SNP [dm3] X_9600260_SNP [dm6]	C	T	1.519e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	9494335	X_9494335_SNP [dm3] X_9600302_SNP [dm6]	A	G	1.519e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	6933188	3R_6933188_SNP [dm3] 3R_11107466_SNP [dm6]	T	C	1.521e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	10828282	2L_10828282_SNP [dm3] 2L_10828282_SNP [dm6]	C	T	1.525e^-4	0.968	INTRON Nos
X	15731394	X_15731394_SNP [dm3] X_15837361_SNP [dm6]	T	C	1.530e^-4	0.968	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	1.533e^-4	0.968	INTRON GABA-B-R1
2R	19727517	2R_19727517_SNP [dm3] 2R_23839994_SNP [dm6]	T	C	1.539e^-4	0.968	UPSTREAM CR44805 DOWNSTREAM CG5549 EXON snoRNA:Psi18S-176	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18755699	3L_18755699_SNP [dm3] 3L_18762599_SNP [dm6]	A	T	1.540e^-4	0.968	INTRON ftz-f1
2L	15001398	2L_15001398_SNP [dm3] 2L_15001398_SNP [dm6]	C	T	1.544e^-4	0.968	INTERGENIC
3R	20391700	3R_20391700_SNP [dm3] 3R_24565978_SNP [dm6]	G	A	1.552e^-4	0.968	INTRON CG13624	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25546322	3R_25546322_SNP [dm3] 3R_29720600_SNP [dm6]	A	G	1.552e^-4	0.968	INTRON CG15506
3L	4530194	3L_4530194_SNP [dm3] 3L_4530194_SNP [dm6]	T	C	1.558e^-4	0.968	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11845732	2R_11845732_SNP [dm3] 2R_15958227_SNP [dm6]	T	C	1.560e^-4	0.968	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12892589	2L_12892589_SNP [dm3] 2L_12892589_SNP [dm6]	G	C	1.560e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21384283	X_21384283_SNP [dm3] X_21513256_SNP [dm6]	A	G	1.561e^-4	0.968	INTRON CR45082
3R	15639646	3R_15639646_SNP [dm3] 3R_19813924_SNP [dm6]	C	G	1.563e^-4	0.968	INTRON bnl
X	9807649	X_9807649_SNP [dm3] X_9913616_SNP [dm6]	G	T	1.574e^-4	0.968	INTERGENIC
3L	10837095	3L_10837095_SNP [dm3] 3L_10843995_SNP [dm6]	G	T	1.587e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	18536131	3R_18536131_SNP [dm3] 3R_22710409_SNP [dm6]	G	A	1.593e^-4	0.968	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	11014360	3L_11014360_SNP [dm3] 3L_11021260_SNP [dm6]	T	A	1.600e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	20661845	3L_20661845_SNP [dm3] 3L_20668745_SNP [dm6]	A	T	1.604e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17075801	3R_17075801_SNP [dm3] 3R_21250079_SNP [dm6]	T	G	1.605e^-4	0.968	INTRON ETHR
2L	20245125	2L_20245125_SNP [dm3] 2L_20245125_SNP [dm6]	A	C	1.610e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	18423113	X_18423113_SNP [dm3] X_18529080_SNP [dm6]	C	G	1.618e^-4	0.968	SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	870962	3L_870962_SNP [dm3] 3L_870962_SNP [dm6]	C	T	1.626e^-4	0.968	UTR_3_PRIME CG12502 UPSTREAM CG32479 DOWNSTREAM CG12502	TF binding site BDTNP1_TFBS_dl
3L	4099250	3L_4099250_SNP [dm3] 3L_4099250_SNP [dm6]	T	A	1.627e^-4	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	8836522	2R_8836522_SNP [dm3] 2R_12949017_SNP [dm6]	A	G	1.631e^-4	0.968	SYNONYMOUS_CODING CG44251	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12668795	2L_12668795_SNP [dm3] 2L_12668795_SNP [dm6]	G	A	1.633e^-4	0.968	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21081864	X_21081864_SNP [dm3] X_21210837_SNP [dm6]	G	A	1.634e^-4	0.968	INTRON CG32521
3L	6500407	3L_6500407_SNP [dm3] 3L_6507307_SNP [dm6]	C	G	1.640e^-4	0.968	INTRON sfl
3L	8549937	3L_8549937_SNP [dm3] 3L_8556837_SNP [dm6]	C	T	1.644e^-4	0.968	INTRON rhea	TF binding site BDTNP1_TFBS_dl
X	11293494	X_11293494_SNP [dm3] X_11399461_SNP [dm6]	A	T	1.669e^-4	0.968	INTRON dlg1
3R	12109413	3R_12109413_SNP [dm3] 3R_16283691_SNP [dm6]	T	A	1.669e^-4	0.968	INTRON gish
2R	17941329	2R_17941329_SNP [dm3] 2R_22053824_SNP [dm6]	A	T	1.679e^-4	0.968	INTERGENIC
X	9494303	X_9494303_SNP [dm3] X_9600270_SNP [dm6]	A	G	1.682e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
X	21461363	X_21461363_SNP [dm3] X_21590336_SNP [dm6]	C	G	1.685e^-4	0.968	INTERGENIC
2R	13435137	2R_13435137_SNP [dm3] 2R_17547632_SNP [dm6]	T	C	1.687e^-4	0.968	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	9494296	X_9494296_SNP [dm3] X_9600263_SNP [dm6]	C	A	1.689e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20208539	3R_20208539_SNP [dm3] 3R_24382817_SNP [dm6]	T	A	1.695e^-4	0.968	DOWNSTREAM CG17780 INTERGENIC
3R	15993568	3R_15993568_SNP [dm3] 3R_20167846_SNP [dm6]	G	A	1.702e^-4	0.968	INTERGENIC
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	1.706e^-4	0.968	UPSTREAM CG43366 INTERGENIC
3L	4579529	3L_4579529_SNP [dm3] 3L_4579529_SNP [dm6]	T	C	1.709e^-4	0.968	INTRON CG42540
2L	7070955	2L_7070955_SNP [dm3] 2L_7070955_SNP [dm6]	G	T	1.718e^-4	0.968	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	15849362	3R_15849362_SNP [dm3] 3R_20023640_SNP [dm6]	G	A	1.736e^-4	0.968	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
3R	19097250	3R_19097250_SNP [dm3] 3R_23271528_SNP [dm6]	A	T	1.737e^-4	0.968	INTRON orb
3L	10836670	3L_10836670_SNP [dm3] 3L_10843570_SNP [dm6]	T	A	1.739e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1644348	2L_1644348_INS [dm3] 2L_1644348_INS [dm6]	T	TT	1.740e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	16825260	3R_16825260_SNP [dm3] 3R_20999538_SNP [dm6]	C	T	1.746e^-4	0.968	INTRON Calx
X	13875046	X_13875046_SNP [dm3] X_13981013_SNP [dm6]	T	A	1.769e^-4	0.968	INTRON mamo
3R	8573242	3R_8573242_SNP [dm3] 3R_12747520_SNP [dm6]	T	G	1.777e^-4	0.968	SYNONYMOUS_CODING beat-Vc
3R	14723463	3R_14723463_SNP [dm3] 3R_18897741_SNP [dm6]	C	A	1.781e^-4	0.968	UPSTREAM CG14297 INTERGENIC
3L	8130079	3L_8130079_SNP [dm3] 3L_8136979_SNP [dm6]	A	G	1.786e^-4	0.968	UPSTREAM mus301 INTRON CG7504	TF binding site mE1_TFBS_sens mE1_TFBS_ttk
3R	17753450	3R_17753450_SNP [dm3] 3R_21927728_SNP [dm6]	G	A	1.789e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	20198455	3L_20198455_SNP [dm3] 3L_20205355_SNP [dm6]	T	A	1.790e^-4	0.968	NON_SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17765430	3R_17765430_SNP [dm3] 3R_21939708_SNP [dm6]	A	T	1.792e^-4	0.968	INTERGENIC
3R	26640172	3R_26640172_SNP [dm3] 3R_30814450_SNP [dm6]	A	G	1.797e^-4	0.968	INTRON cindr	TF binding site BDTNP1_TFBS_twi
2R	12665604	2R_12665604_INS [dm3] 2R_16778099_INS [dm6]	A	AAAA	1.804e^-4	0.968	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15524031	2R_15524031_SNP [dm3] 2R_19636526_SNP [dm6]	G	C	1.804e^-4	0.968	UPSTREAM CG18367 & 1 other DOWNSTREAM CG42753 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14723461	3R_14723461_SNP [dm3] 3R_18897739_SNP [dm6]	C	G	1.807e^-4	0.968	UPSTREAM CG14297 INTERGENIC
2L	19886611	2L_19886611_INS [dm3] 2L_19886611_INS [dm6]	G	GCTTCGG	1.814e^-4	0.968	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	894572	3L_894572_SNP [dm3] 3L_894572_SNP [dm6]	T	G	1.816e^-4	0.968	UTR_3_PRIME CG32479
2L	15101246	2L_15101246_SNP [dm3] 2L_15101246_SNP [dm6]	A	G	1.823e^-4	0.968	INTERGENIC
3L	12240160	3L_12240160_SNP [dm3] 3L_12247060_SNP [dm6]	T	A	1.853e^-4	0.968	INTRON app
3R	13380107	3R_13380107_SNP [dm3] 3R_17554385_SNP [dm6]	A	T	1.858e^-4	0.968	INTERGENIC
3L	6503375	3L_6503375_SNP [dm3] 3L_6510275_SNP [dm6]	G	T	1.862e^-4	0.968	INTRON sfl
3R	20480787	3R_20480787_SNP [dm3] 3R_24655065_SNP [dm6]	T	C	1.878e^-4	0.968	UPSTREAM CG6695 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	8645168	3L_8645168_SNP [dm3] 3L_8652068_SNP [dm6]	C	T	1.878e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9298634	3R_9298634_SNP [dm3] 3R_13472912_SNP [dm6]	T	A	1.883e^-4	0.968	INTERGENIC
3L	814078	3L_814078_SNP [dm3] 3L_814078_SNP [dm6]	A	C	1.885e^-4	0.968	EXON CR44537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20041270	2L_20041270_SNP [dm3] 2L_20041270_SNP [dm6]	C	A	1.886e^-4	0.968	INTRON sNPF
2L	20041271	2L_20041271_SNP [dm3] 2L_20041271_SNP [dm6]	A	G	1.886e^-4	0.968	INTRON sNPF
2R	16128809	2R_16128809_SNP [dm3] 2R_20241304_SNP [dm6]	C	T	1.903e^-4	0.968	SYNONYMOUS_CODING Efhc1.2	TF binding site mE1_TFBS_cad
2L	15738708	2L_15738708_INS [dm3] 2L_15738708_INS [dm6]	A	AGA	1.920e^-4	0.968	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	10084018	2L_10084018_DEL [dm3] 2L_10084018_DEL [dm6]	GC	G	1.926e^-4	0.968	INTRON CG44153
2L	10117705	2L_10117705_SNP [dm3] 2L_10117705_SNP [dm6]	G	A	1.930e^-4	0.968	INTRON CG44153 & 1 other
2L	9303395	2L_9303395_SNP [dm3] 2L_9303395_SNP [dm6]	T	A	1.950e^-4	0.968	DOWNSTREAM Ggamma30A INTERGENIC
2L	16171555	2L_16171555_SNP [dm3] 2L_16171555_SNP [dm6]	T	C	1.951e^-4	0.968	INTRON Ca-alpha1D
2R	11734186	2R_11734186_SNP [dm3] 2R_15846681_SNP [dm6]	A	C	1.974e^-4	0.968	INTRON tun & 1 other	TF binding site mE1_TFBS_sens
3R	17246612	3R_17246612_SNP [dm3] 3R_21420890_SNP [dm6]	A	T	1.974e^-4	0.968	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3454623	2L_3454623_SNP [dm3] 2L_3454623_SNP [dm6]	T	G	1.978e^-4	0.968	NON_SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
3R	20392893	3R_20392893_SNP [dm3] 3R_24567171_SNP [dm6]	T	C	1.991e^-4	0.968	INTRON CG13624	TF binding site mE1_TFBS_cnc
2R	1774530	2R_1774530_SNP [dm3] 2R_5887025_SNP [dm6]	G	C	2.012e^-4	0.968	DOWNSTREAM CR44125 INTERGENIC
2L	18714307	2L_18714307_SNP [dm3] 2L_18714307_SNP [dm6]	G	A	2.022e^-4	0.968	UPSTREAM Irk3 DOWNSTREAM CG10348 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4099236	3L_4099236_SNP [dm3] 3L_4099236_SNP [dm6]	C	A	2.030e^-4	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	4861892	X_4861892_SNP [dm3] X_4967859_SNP [dm6]	G	A	2.037e^-4	0.968	INTRON CR44833	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6259464	2R_6259464_SNP [dm3] 2R_10371959_SNP [dm6]	C	A	2.039e^-4	0.968	INTRON CG42732	TF binding site mE1_TFBS_inv
2R	15152033	2R_15152033_SNP [dm3] 2R_19264528_SNP [dm6]	G	A	2.040e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	11336512	3L_11336512_SNP [dm3] 3L_11343412_SNP [dm6]	G	C	2.061e^-4	0.968	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	2.074e^-4	0.968	INTRON CG6225
2R	16648581	2R_16648581_SNP [dm3] 2R_20761076_SNP [dm6]	T	C	2.082e^-4	0.968	INTERGENIC
3R	23294032	3R_23294032_SNP [dm3] 3R_27468310_SNP [dm6]	G	A	2.093e^-4	0.968	INTERGENIC
2L	19875536	2L_19875536_SNP [dm3] 2L_19875536_SNP [dm6]	C	G	2.105e^-4	0.968	INTRON sick	TF binding site mE1_TFBS_cad
2L	3262851	2L_3262851_SNP [dm3] 2L_3262851_SNP [dm6]	G	A	2.105e^-4	0.968	UPSTREAM CR45338 INTERGENIC
2R	17542564	2R_17542564_SNP [dm3] 2R_21655059_SNP [dm6]	C	T	2.127e^-4	0.968	INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12131607	2R_12131607_SNP [dm3] 2R_16244102_SNP [dm6]	G	T	2.127e^-4	0.968	INTRON CngA	TF binding site mE1_TFBS_inv
3L	20436290	3L_20436290_SNP [dm3] 3L_20443190_SNP [dm6]	A	C	2.137e^-4	0.968	INTRON CG5910	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9202366	3L_9202366_SNP [dm3] 3L_9209266_SNP [dm6]	A	G	2.138e^-4	0.968	UPSTREAM Slc45-1 INTERGENIC
3L	4130019	3L_4130019_SNP [dm3] 3L_4130019_SNP [dm6]	T	C	2.138e^-4	0.968	INTRON ens
3R	9924676	3R_9924676_SNP [dm3] 3R_14098954_SNP [dm6]	G	A	2.142e^-4	0.968	UPSTREAM CG9920 DOWNSTREAM PK1-R INTERGENIC
3L	4130022	3L_4130022_SNP [dm3] 3L_4130022_SNP [dm6]	T	A	2.147e^-4	0.968	INTRON ens
3R	17755476	3R_17755476_SNP [dm3] 3R_21929754_SNP [dm6]	A	T	2.154e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	1800748	2R_1800748_SNP [dm3] 2R_5913243_SNP [dm6]	G	A	2.158e^-4	0.968	INTRON CG43366	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8130780	3L_8130780_SNP [dm3] 3L_8137680_SNP [dm6]	G	T	2.163e^-4	0.968	UPSTREAM mus301 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1411123	2L_1411123_DEL [dm3] 2L_1411123_DEL [dm6]	TC	T	2.164e^-4	0.968	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	20198752	3L_20198752_SNP [dm3] 3L_20205652_SNP [dm6]	G	A	2.168e^-4	0.968	SYNONYMOUS_CODING CG7290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17941322	2R_17941322_SNP [dm3] 2R_22053817_SNP [dm6]	G	A	2.170e^-4	0.968	INTERGENIC
3L	2713369	3L_2713369_SNP [dm3] 3L_2713369_SNP [dm6]	A	T	2.170e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	1399235	2L_1399235_SNP [dm3] 2L_1399235_SNP [dm6]	T	C	2.174e^-4	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	15372971	2L_15372971_SNP [dm3] 2L_15372971_SNP [dm6]	C	G	2.182e^-4	0.968	INTERGENIC
2L	8617092	2L_8617092_SNP [dm3] 2L_8617092_SNP [dm6]	G	A	2.194e^-4	0.968	INTRON Sema-1a
2L	12143623	2L_12143623_SNP [dm3] 2L_12143623_SNP [dm6]	G	T	2.199e^-4	0.968	INTRON CG31760
3R	15855586	3R_15855586_SNP [dm3] 3R_20029864_SNP [dm6]	G	C	2.206e^-4	0.968	DOWNSTREAM CG4854 INTRON trem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17941318	2R_17941318_SNP [dm3] 2R_22053813_SNP [dm6]	A	G	2.210e^-4	0.968	INTERGENIC
3L	19947312	3L_19947312_SNP [dm3] 3L_19954212_SNP [dm6]	C	T	2.222e^-4	0.968	SYNONYMOUS_CODING CG42654 UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
X	3970338	X_3970338_INS [dm3] X_4076305_INS [dm6]	A	AA	2.241e^-4	0.968	UTR_5_PRIME CG43689
2R	18704324	2R_18704324_SNP [dm3] 2R_22816819_SNP [dm6]	C	A	2.245e^-4	0.968	UPSTREAM CG30271 DOWNSTREAM stl INTRON CG30271
3R	27391743	3R_27391743_SNP [dm3] 3R_31566021_SNP [dm6]	A	G	2.253e^-4	0.968	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3R	21736718	3R_21736718_SNP [dm3] 3R_25910996_SNP [dm6]	A	G	2.254e^-4	0.968	INTRON CG42235
3R	24033022	3R_24033022_INS [dm3] 3R_28207300_INS [dm6]	G	GGCTGAGGAGTCG...	2.260e^-4	0.968	INTRON CG34354	TF binding site mE1_TFBS_chinmo
3L	11585427	3L_11585427_SNP [dm3] 3L_11592327_SNP [dm6]	A	T	2.270e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
X	21437621	X_21437621_SNP [dm3] X_21566594_SNP [dm6]	A	C	2.283e^-4	0.968	INTERGENIC
2L	20722702	2L_20722702_SNP [dm3] 2L_20722702_SNP [dm6]	C	T	2.287e^-4	0.968	DOWNSTREAM CR45306 INTERGENIC
3R	15849344	3R_15849344_SNP [dm3] 3R_20023622_SNP [dm6]	C	G	2.305e^-4	0.968	SYNONYMOUS_CODING psidin	TF binding site mE1_TFBS_cad
2L	18486222	2L_18486222_DEL [dm3] 2L_18486222_DEL [dm6]	TTCCAAAAGATT...	T	2.307e^-4	0.968	INTRON CG10176	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	26710952	3R_26710952_SNP [dm3] 3R_30885230_SNP [dm6]	C	T	2.311e^-4	0.968	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26710958	3R_26710958_SNP [dm3] 3R_30885236_SNP [dm6]	T	A	2.311e^-4	0.968	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16398946	3R_16398946_SNP [dm3] 3R_20573224_SNP [dm6]	G	A	2.314e^-4	0.968	DOWNSTREAM CG5191 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	2.317e^-4	0.968	INTRON CG42260
3L	11173194	3L_11173194_SNP [dm3] 3L_11180094_SNP [dm6]	A	G	2.322e^-4	0.968	INTRON GlcAT-P
3L	10846861	3L_10846861_SNP [dm3] 3L_10853761_SNP [dm6]	T	A	2.330e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	9685163	X_9685163_SNP [dm3] X_9791130_SNP [dm6]	G	A	2.339e^-4	0.968	INTRON CG32698
2R	16758526	2R_16758526_SNP [dm3] 2R_20871021_SNP [dm6]	A	G	2.341e^-4	0.968	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19713614	3R_19713614_SNP [dm3] 3R_23887892_SNP [dm6]	A	G	2.346e^-4	0.968	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	18934616	X_18934616_SNP [dm3] X_19040583_SNP [dm6]	A	T	2.351e^-4	0.968	INTERGENIC
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	2.352e^-4	0.968	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
X	18229378	X_18229378_SNP [dm3] X_18335345_SNP [dm6]	G	A	2.355e^-4	0.968	INTRON CG6123
3R	11188149	3R_11188149_SNP [dm3] 3R_15362427_SNP [dm6]	A	G	2.355e^-4	0.968	SYNONYMOUS_CODING Trax UPSTREAM ldlCp DOWNSTREAM CG6171
2R	16566909	2R_16566909_SNP [dm3] 2R_20679404_SNP [dm6]	T	C	2.355e^-4	0.968	INTERGENIC
3R	25189425	3R_25189425_SNP [dm3] 3R_29363703_SNP [dm6]	C	G	2.362e^-4	0.968	INTERGENIC
2R	12131689	2R_12131689_SNP [dm3] 2R_16244184_SNP [dm6]	G	A	2.373e^-4	0.968	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_inv
X	9497941	X_9497941_SNP [dm3] X_9603908_SNP [dm6]	A	G	2.373e^-4	0.968	SYNONYMOUS_CODING Gga DOWNSTREAM Lst8
3R	21727766	3R_21727766_SNP [dm3] 3R_25902044_SNP [dm6]	G	T	2.378e^-4	0.968	UTR_3_PRIME CG31091 UPSTREAM CG31089 DOWNSTREAM CR43259
X	9494427	X_9494427_SNP [dm3] X_9600394_SNP [dm6]	A	G	2.381e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3147496	3L_3147496_SNP [dm3] 3L_3147496_SNP [dm6]	C	A	2.392e^-4	0.968	INTRON CG12082	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
3L	5264285	3L_5264285_SNP [dm3] 3L_5271185_SNP [dm6]	C	T	2.395e^-4	0.968	INTRON shep
3L	11938857	3L_11938857_SNP [dm3] 3L_11945757_SNP [dm6]	A	C	2.397e^-4	0.968	UPSTREAM CG5883 DOWNSTREAM mir-285 INTERGENIC
3L	16531305	3L_16531305_SNP [dm3] 3L_16538205_SNP [dm6]	C	T	2.401e^-4	0.968	INTRON CG43373
3L	18897058	3L_18897058_SNP [dm3] 3L_18903958_SNP [dm6]	G	A	2.402e^-4	0.968	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1721668	2L_1721668_INS [dm3] 2L_1721668_INS [dm6]	A	GT	2.410e^-4	0.968	INTRON Rim2
3L	4099234	3L_4099234_SNP [dm3] 3L_4099234_SNP [dm6]	C	G	2.411e^-4	0.968	INTRON CG14995	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	19895418	2L_19895418_SNP [dm3] 2L_19895418_SNP [dm6]	G	A	2.414e^-4	0.968	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3R	26683718	3R_26683718_SNP [dm3] 3R_30857996_SNP [dm6]	G	T	2.426e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_sens
2R	2108862	2R_2108862_SNP [dm3] 2R_6221357_SNP [dm6]	G	C	2.435e^-4	0.968	INTRON bin3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	21384446	X_21384446_SNP [dm3] X_21513419_SNP [dm6]	T	C	2.436e^-4	0.968	INTRON CR45082
3R	18880557	3R_18880557_SNP [dm3] 3R_23054835_SNP [dm6]	G	A	2.444e^-4	0.968	SPLICE_SITE_REGION CG17119 UPSTREAM p53 INTRON CG17119	TF binding site BDTNP1_TFBS_prd
2L	1396684	2L_1396684_SNP [dm3] 2L_1396684_SNP [dm6]	G	C	2.445e^-4	0.968	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	10207407	2L_10207407_SNP [dm3] 2L_10207407_SNP [dm6]	A	G	2.461e^-4	0.968	SYNONYMOUS_CODING CG5731 UPSTREAM CG5734	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_ttk
3L	6680787	3L_6680787_SNP [dm3] 3L_6687687_SNP [dm6]	G	A	2.477e^-4	0.968	INTERGENIC
2L	12157855	2L_12157855_SNP [dm3] 2L_12157855_SNP [dm6]	T	C	2.487e^-4	0.968	INTRON CG31760
3L	18323713	3L_18323713_SNP [dm3] 3L_18330613_SNP [dm6]	A	G	2.490e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	18536299	3R_18536299_SNP [dm3] 3R_22710577_SNP [dm6]	T	C	2.492e^-4	0.968	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi
3R	15993728	3R_15993728_SNP [dm3] 3R_20168006_SNP [dm6]	T	C	2.501e^-4	0.968	INTERGENIC
2L	1098482	2L_1098482_SNP [dm3] 2L_1098482_SNP [dm6]	A	T	2.504e^-4	0.968	INTRON CG4629
3L	8578189	3L_8578189_SNP [dm3] 3L_8585089_SNP [dm6]	C	T	2.504e^-4	0.968	UPSTREAM CG43078 INTRON CG43078
3L	16531253	3L_16531253_SNP [dm3] 3L_16538153_SNP [dm6]	C	T	2.504e^-4	0.968	INTRON CG43373
3R	18184638	3R_18184638_SNP [dm3] 3R_22358916_SNP [dm6]	T	C	2.509e^-4	0.968	INTRON Sar1
3R	18184639	3R_18184639_DEL [dm3] 3R_22358917_DEL [dm6]	ATCATCTTATCT...	A	2.509e^-4	0.968	INTRON Sar1
3L	4002814	3L_4002814_SNP [dm3] 3L_4002814_SNP [dm6]	C	G	2.509e^-4	0.968	UPSTREAM CG14985 INTERGENIC
2R	6561169	2R_6561169_DEL [dm3] 2R_10673664_DEL [dm6]	TA	G	2.510e^-4	0.968	UTR_5_PRIME stan	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1254840	3L_1254840_SNP [dm3] 3L_1254840_SNP [dm6]	C	A	2.510e^-4	0.968	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16017371	3R_16017371_SNP [dm3] 3R_20191649_SNP [dm6]	A	G	2.516e^-4	0.968	INTERGENIC
2L	21321186	2L_21321186_SNP [dm3] 2L_21321186_SNP [dm6]	C	T	2.516e^-4	0.968	UPSTREAM CR44785 INTERGENIC
3L	10615771	3L_10615771_SNP [dm3] 3L_10622671_SNP [dm6]	G	A	2.517e^-4	0.968	DOWNSTREAM CG42521 INTERGENIC
2R	12225110	2R_12225110_SNP [dm3] 2R_16337605_SNP [dm6]	C	A	2.529e^-4	0.968	UPSTREAM Vha44 & 1 other INTRON Hmgs	TF binding site BDTNP1_TFBS_dl
3R	24828511	3R_24828511_SNP [dm3] 3R_29002789_SNP [dm6]	G	T	2.531e^-4	0.968	INTRON wat	TF binding site BDTNP1_TFBS_twi
2R	20380032	2R_20380032_SNP [dm3] 2R_24492509_SNP [dm6]	A	G	2.534e^-4	0.968	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
3L	18897412	3L_18897412_SNP [dm3] 3L_18904312_SNP [dm6]	T	G	2.534e^-4	0.968	SYNONYMOUS_CODING CSN1b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7663519	X_7663519_SNP [dm3] X_7769486_SNP [dm6]	G	C	2.537e^-4	0.968	DOWNSTREAM CG34338 INTERGENIC
3L	10832574	3L_10832574_SNP [dm3] 3L_10839474_SNP [dm6]	G	A	2.541e^-4	0.968	INTERGENIC
3L	6500437	3L_6500437_SNP [dm3] 3L_6507337_SNP [dm6]	T	A	2.546e^-4	0.968	INTRON sfl
X	3810987	X_3810987_SNP [dm3] X_3916954_SNP [dm6]	C	T	2.548e^-4	0.968	INTRON CG42541
3L	10296688	3L_10296688_SNP [dm3] 3L_10303588_SNP [dm6]	C	A	2.555e^-4	0.968	INTERGENIC
2L	18012434	2L_18012434_SNP [dm3] 2L_18012434_SNP [dm6]	A	T	2.557e^-4	0.968	START_GAINED rdo UTR_5_PRIME rdo UPSTREAM elfless
3L	10837646	3L_10837646_SNP [dm3] 3L_10844546_SNP [dm6]	T	A	2.561e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	3970331	X_3970331_SNP [dm3] X_4076298_SNP [dm6]	C	A	2.568e^-4	0.968	UTR_5_PRIME CG43689
3R	15815751	3R_15815751_SNP [dm3] 3R_19990029_SNP [dm6]	A	G	2.577e^-4	0.968	INTRON Hs6st
3R	7159473	3R_7159473_SNP [dm3] 3R_11333751_SNP [dm6]	G	A	2.578e^-4	0.968	INTRON pros
3R	26728195	3R_26728195_SNP [dm3] 3R_30902473_SNP [dm6]	C	A	2.580e^-4	0.968	UPSTREAM CG33483 INTERGENIC
2R	10003108	2R_10003108_SNP [dm3] 2R_14115603_SNP [dm6]	A	G	2.594e^-4	0.968	INTRON Prosap
3R	17755460	3R_17755460_SNP [dm3] 3R_21929738_SNP [dm6]	A	T	2.597e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	18698160	3R_18698160_SNP [dm3] 3R_22872438_SNP [dm6]	T	G	2.599e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18858554	2R_18858554_DEL [dm3] 2R_22971031_DEL [dm6]	GA	G	2.601e^-4	0.968	INTERGENIC
3L	9419581	3L_9419581_SNP [dm3] 3L_9426481_SNP [dm6]	A	T	2.613e^-4	0.968	UTR_5_PRIME CG3967 UPSTREAM Shc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2L	14776634	2L_14776634_SNP [dm3] 2L_14776634_SNP [dm6]	T	C	2.614e^-4	0.968	INTERGENIC
2R	12665592	2R_12665592_DEL [dm3] 2R_16778087_DEL [dm6]	CGGA	G	2.615e^-4	0.968	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24987246	3R_24987246_SNP [dm3] 3R_29161524_SNP [dm6]	T	C	2.626e^-4	0.968	SYNONYMOUS_CODING CG11897
X	18063906	X_18063906_SNP [dm3] X_18169873_SNP [dm6]	G	C	2.630e^-4	0.968	INTRON Frq1
X	18063942	X_18063942_SNP [dm3] X_18169909_SNP [dm6]	A	G	2.630e^-4	0.968	INTRON Frq1
2R	18438635	2R_18438635_SNP [dm3] 2R_22551130_SNP [dm6]	A	G	2.636e^-4	0.968	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12579459	2L_12579459_SNP [dm3] 2L_12579459_SNP [dm6]	A	G	2.640e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	6653492	3L_6653492_SNP [dm3] 3L_6660392_SNP [dm6]	A	C	2.645e^-4	0.968	INTERGENIC
3L	3871908	3L_3871908_SNP [dm3] 3L_3871908_SNP [dm6]	A	G	2.659e^-4	0.968	INTERGENIC
2L	15210243	2L_15210243_SNP [dm3] 2L_15210243_SNP [dm6]	C	T	2.668e^-4	0.968	INTERGENIC
3L	2479734	3L_2479734_SNP [dm3] 3L_2479734_SNP [dm6]	C	G	2.669e^-4	0.968	INTRON CG45186
3R	15855875	3R_15855875_SNP [dm3] 3R_20030153_SNP [dm6]	T	C	2.676e^-4	0.968	SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21437488	X_21437488_SNP [dm3] X_21566461_SNP [dm6]	C	A	2.677e^-4	0.968	INTERGENIC
X	9494290	X_9494290_SNP [dm3] X_9600257_SNP [dm6]	C	T	2.681e^-4	0.968	UPSTREAM Gga INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6503754	3L_6503754_SNP [dm3] 3L_6510654_SNP [dm6]	C	T	2.682e^-4	0.968	INTRON sfl
2R	13406896	2R_13406896_SNP [dm3] 2R_17519391_SNP [dm6]	A	G	2.688e^-4	0.968	UTR_3_PRIME Patronin DOWNSTREAM Patronin & 1 other
3L	7456493	3L_7456493_SNP [dm3] 3L_7463393_SNP [dm6]	C	T	2.690e^-4	0.968	INTERGENIC
3R	24978557	3R_24978557_SNP [dm3] 3R_29152835_SNP [dm6]	C	A	2.690e^-4	0.968	NON_SYNONYMOUS_CODING Slbp UPSTREAM Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	2.694e^-4	0.968	INTERGENIC
2R	12132406	2R_12132406_SNP [dm3] 2R_16244901_SNP [dm6]	G	A	2.698e^-4	0.968	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7466143	2R_7466143_SNP [dm3] 2R_11578638_SNP [dm6]	C	T	2.703e^-4	0.968	UTR_3_PRIME tou DOWNSTREAM tou
3R	15469687	3R_15469687_SNP [dm3] 3R_19643965_SNP [dm6]	C	A	2.705e^-4	0.968	INTRON Vha13	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12892582	2L_12892582_SNP [dm3] 2L_12892582_SNP [dm6]	G	T	2.711e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11121007	3L_11121007_SNP [dm3] 3L_11127907_SNP [dm6]	C	A	2.713e^-4	0.968	INTRON CG42575
3R	22199777	3R_22199777_SNP [dm3] 3R_26374055_SNP [dm6]	T	C	2.716e^-4	0.968	INTERGENIC
2L	19907152	2L_19907152_SNP [dm3] 2L_19907152_SNP [dm6]	G	C	2.729e^-4	0.968	INTRON sick
2R	20357892	2R_20357892_SNP [dm3] 2R_24470369_SNP [dm6]	C	G	2.733e^-4	0.968	INTRON CG13579
3L	6382183	3L_6382183_SNP [dm3] 3L_6389083_SNP [dm6]	A	T	2.741e^-4	0.968	INTERGENIC
2L	19870120	2L_19870120_SNP [dm3] 2L_19870120_SNP [dm6]	A	G	2.743e^-4	0.968	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	1590752	3L_1590752_SNP [dm3] 3L_1590752_SNP [dm6]	G	A	2.744e^-4	0.968	INTRON CG13917
3L	3796478	3L_3796478_SNP [dm3] 3L_3796478_SNP [dm6]	C	A	2.744e^-4	0.968	INTRON CG32264
3L	1275236	3L_1275236_SNP [dm3] 3L_1275236_SNP [dm6]	C	A	2.772e^-4	0.968	UPSTREAM CG32333 DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10487398	2R_10487398_SNP [dm3] 2R_14599893_SNP [dm6]	A	G	2.780e^-4	0.968	SYNONYMOUS_CODING RpI1
3R	23247928	3R_23247928_SNP [dm3] 3R_27422206_SNP [dm6]	G	A	2.782e^-4	0.968	INTRON side
3R	15108796	3R_15108796_SNP [dm3] 3R_19283074_SNP [dm6]	C	G	2.784e^-4	0.968	INTERGENIC
2L	10828320	2L_10828320_SNP [dm3] 2L_10828320_SNP [dm6]	G	T	2.790e^-4	0.968	INTRON Nos
2R	13184204	2R_13184204_SNP [dm3] 2R_17296699_SNP [dm6]	T	A	2.799e^-4	0.968	INTRON mbl
3L	13579097	3L_13579097_SNP [dm3] 3L_13585997_SNP [dm6]	C	G	2.831e^-4	0.968	INTRON bru-3
3R	17319632	3R_17319632_SNP [dm3] 3R_21493910_SNP [dm6]	G	A	2.834e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13877716	2L_13877716_SNP [dm3] 2L_13877716_SNP [dm6]	A	G	2.863e^-4	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6669292	3L_6669292_SNP [dm3] 3L_6676192_SNP [dm6]	C	T	2.868e^-4	0.968	INTERGENIC
2L	3455419	2L_3455419_SNP [dm3] 2L_3455419_SNP [dm6]	A	G	2.870e^-4	0.968	SYNONYMOUS_CODING Cog3
3R	16034099	3R_16034099_SNP [dm3] 3R_20208377_SNP [dm6]	T	A	2.872e^-4	0.968	NON_SYNONYMOUS_CODING CG17199 INTRON Nlg4
X	10905458	X_10905458_SNP [dm3] X_11011425_SNP [dm6]	G	A	2.872e^-4	0.968	INTRON CG42339
3L	6668972	3L_6668972_SNP [dm3] 3L_6675872_SNP [dm6]	C	T	2.873e^-4	0.968	INTERGENIC
3R	23339689	3R_23339689_SNP [dm3] 3R_27513967_SNP [dm6]	C	T	2.880e^-4	0.968	INTERGENIC
2R	13765359	2R_13765359_SNP [dm3] 2R_17877854_SNP [dm6]	T	C	2.888e^-4	0.968	SYNONYMOUS_CODING CG30325 INTRON Elk
2R	13435049	2R_13435049_SNP [dm3] 2R_17547544_SNP [dm6]	G	T	2.888e^-4	0.968	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13816343	2R_13816343_SNP [dm3] 2R_17928838_SNP [dm6]	A	T	2.889e^-4	0.968	INTERGENIC
2R	16462800	2R_16462800_SNP [dm3] 2R_20575295_SNP [dm6]	T	G	2.893e^-4	0.968	INTRON qsm
2R	16643341	2R_16643341_SNP [dm3] 2R_20755836_SNP [dm6]	G	C	2.895e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
X	5533072	X_5533072_SNP [dm3] X_5639039_SNP [dm6]	A	C	2.899e^-4	0.968	INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14040915	3R_14040915_SNP [dm3] 3R_18215193_SNP [dm6]	A	G	2.912e^-4	0.968	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	transposable element FlyBase
3L	13340073	3L_13340073_SNP [dm3] 3L_13346973_SNP [dm6]	A	T	2.914e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8005287	3L_8005287_SNP [dm3] 3L_8012187_SNP [dm6]	C	G	2.920e^-4	0.968	INTRON nmo
3L	1472269	3L_1472269_SNP [dm3] 3L_1472269_SNP [dm6]	T	A	2.929e^-4	0.968	UPSTREAM CG32319 INTRON Ptp61F
2L	11889742	2L_11889742_SNP [dm3] 2L_11889742_SNP [dm6]	A	C	2.939e^-4	0.968	INTRON Pde1c
3R	26446935	3R_26446935_SNP [dm3] 3R_30621213_SNP [dm6]	A	T	2.941e^-4	0.968	INTRON CG44954
2L	12668864	2L_12668864_SNP [dm3] 2L_12668864_SNP [dm6]	A	G	2.941e^-4	0.968	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3862196	X_3862196_SNP [dm3] X_3968163_SNP [dm6]	C	T	2.943e^-4	0.968	SYNONYMOUS_CODING CG6428 UPSTREAM CR45481 DOWNSTREAM CG6414	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
X	3786092	X_3786092_INS [dm3] X_3892059_INS [dm6]	G	GG	2.944e^-4	0.968	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
2L	6024834	2L_6024834_SNP [dm3] 2L_6024834_SNP [dm6]	C	G	2.948e^-4	0.968	UPSTREAM CG9107 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_run
2L	20136365	2L_20136365_SNP [dm3] 2L_20136365_SNP [dm6]	C	A	2.949e^-4	0.968	INTERGENIC
3R	27391714	3R_27391714_SNP [dm3] 3R_31565992_SNP [dm6]	T	G	2.953e^-4	0.968	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
X	16439297	X_16439297_SNP [dm3] X_16545264_SNP [dm6]	G	A	2.957e^-4	0.968	SYNONYMOUS_CODING CG9902	TF binding site mE1_TFBS_HSA
3L	7456421	3L_7456421_SNP [dm3] 3L_7463321_SNP [dm6]	A	G	2.960e^-4	0.968	INTERGENIC
X	21448960	X_21448960_SNP [dm3] X_21577933_SNP [dm6]	T	G	2.961e^-4	0.968	INTERGENIC
3L	12164130	3L_12164130_SNP [dm3] 3L_12171030_SNP [dm6]	T	A	2.962e^-4	0.968	INTRON Rh7
2R	12132448	2R_12132448_SNP [dm3] 2R_16244943_SNP [dm6]	A	G	2.965e^-4	0.968	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11867086	3L_11867086_SNP [dm3] 3L_11873986_SNP [dm6]	A	G	2.976e^-4	0.968	INTRON CG44837
3R	18606996	3R_18606996_SNP [dm3] 3R_22781274_SNP [dm6]	G	T	2.986e^-4	0.968	UPSTREAM CG7029 INTRON CG7029 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24132447	3R_24132447_SNP [dm3] 3R_28306725_SNP [dm6]	T	G	2.986e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11448471	2L_11448471_SNP [dm3] 2L_11448471_SNP [dm6]	T	C	2.989e^-4	0.968	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	12109231	3R_12109231_DEL [dm3] 3R_16283509_DEL [dm6]	CA	C	2.992e^-4	0.968	INTRON gish
3R	11869765	3R_11869765_SNP [dm3] 3R_16044043_SNP [dm6]	G	A	2.994e^-4	0.968	NON_SYNONYMOUS_CODING CG10264 DOWNSTREAM CG10407
3R	13453219	3R_13453219_SNP [dm3] 3R_17627497_SNP [dm6]	T	A	2.998e^-4	0.968	INTRON CG14325	TF binding site mE1_TFBS_chinmo
2R	17696189	2R_17696189_SNP [dm3] 2R_21808684_SNP [dm6]	A	C	3.002e^-4	0.968	INTERGENIC
2R	13875571	2R_13875571_SNP [dm3] 2R_17988066_SNP [dm6]	A	G	3.004e^-4	0.968	INTRON dpr13
2R	16462801	2R_16462801_SNP [dm3] 2R_20575296_SNP [dm6]	C	T	3.015e^-4	0.968	INTRON qsm
3R	26694141	3R_26694141_SNP [dm3] 3R_30868419_SNP [dm6]	A	G	3.019e^-4	0.968	SYNONYMOUS_CODING Cpr100A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18879879	3R_18879879_INS [dm3] 3R_23054157_INS [dm6]	T	TT	3.026e^-4	0.968	UPSTREAM p53 DOWNSTREAM CG17119 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	10083964	2L_10083964_SNP [dm3] 2L_10083964_SNP [dm6]	C	T	3.031e^-4	0.968	INTRON CG44153
2R	15462744	2R_15462744_SNP [dm3] 2R_19575239_SNP [dm6]	C	T	3.042e^-4	0.968	INTRON sm
2R	15828816	2R_15828816_SNP [dm3] 2R_19941311_SNP [dm6]	A	G	3.045e^-4	0.968	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6263180	2R_6263180_SNP [dm3] 2R_10375675_SNP [dm6]	A	G	3.047e^-4	0.968	DOWNSTREAM Ir47b INTRON CG42732
2R	12596347	2R_12596347_SNP [dm3] 2R_16708842_SNP [dm6]	C	T	3.068e^-4	0.968	INTRON CG30463
3L	18929259	3L_18929259_SNP [dm3] 3L_18936159_SNP [dm6]	T	A	3.082e^-4	0.968	INTRON CG32204
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	3.083e^-4	0.968	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8707376	X_8707376_SNP [dm3] X_8813343_SNP [dm6]	A	T	3.090e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12569553	3L_12569553_SNP [dm3] 3L_12576453_SNP [dm6]	G	A	3.094e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
3R	18534862	3R_18534862_SNP [dm3] 3R_22709140_SNP [dm6]	C	T	3.132e^-4	0.968	NON_SYNONYMOUS_CODING CG4907	TF binding site mE1_TFBS_sens
X	11293360	X_11293360_SNP [dm3] X_11399327_SNP [dm6]	G	A	3.149e^-4	0.968	INTRON dlg1
3R	15855860	3R_15855860_SNP [dm3] 3R_20030138_SNP [dm6]	A	C	3.151e^-4	0.968	SYNONYMOUS_CODING trem DOWNSTREAM CG4854	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	8068453	X_8068453_DEL [dm3] X_8174420_DEL [dm6]	TAGAGTAAAGTAATGTAGAA...	T	3.152e^-4	0.968	INTRON slpr
2R	7302295	2R_7302295_SNP [dm3] 2R_11414790_SNP [dm6]	A	T	3.157e^-4	0.968	SYNONYMOUS_CODING CG7763 INTRON Drip
3R	18536158	3R_18536158_SNP [dm3] 3R_22710436_SNP [dm6]	A	T	3.162e^-4	0.968	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	4400265	X_4400265_SNP [dm3] X_4506232_SNP [dm6]	C	A	3.165e^-4	0.968	INTRON CR32773
3R	20362154	3R_20362154_SNP [dm3] 3R_24536432_SNP [dm6]	G	C	3.173e^-4	0.968	UTR_3_PRIME CG5789 DOWNSTREAM ana1
2L	12156971	2L_12156971_INS [dm3] 2L_12156971_INS [dm6]	A	AAGAGACTATCAGATG...	3.174e^-4	0.968	INTRON CG31760	transposable element FlyBase
2R	4912600	2R_4912600_SNP [dm3] 2R_9025095_SNP [dm6]	A	C	3.175e^-4	0.968	INTRON CG8170	TF binding site mE1_TFBS_HSA
2L	14340040	2L_14340040_SNP [dm3] 2L_14340040_SNP [dm6]	A	G	3.185e^-4	0.968	UTR_3_PRIME CG15286 INTRON CG33090
2L	16176592	2L_16176592_SNP [dm3] 2L_16176592_SNP [dm6]	A	G	3.191e^-4	0.968	SPLICE_SITE_REGION Ca-alpha1D SYNONYMOUS_CODING Ca-alpha1D
3L	15046142	3L_15046142_SNP [dm3] 3L_15053042_SNP [dm6]	A	C	3.191e^-4	0.968	UTR_3_PRIME CG43680 UPSTREAM CG13461 DOWNSTREAM CG18649 INTRON Sytbeta
2L	1398992	2L_1398992_DEL [dm3] 2L_1398992_DEL [dm6]	TCT	T	3.197e^-4	0.968	INTRON lea
3L	12923296	3L_12923296_SNP [dm3] 3L_12930196_SNP [dm6]	G	T	3.198e^-4	0.968	INTERGENIC
3L	20659110	3L_20659110_SNP [dm3] 3L_20666010_SNP [dm6]	G	T	3.206e^-4	0.968	INTERGENIC
2R	15828835	2R_15828835_SNP [dm3] 2R_19941330_SNP [dm6]	C	T	3.212e^-4	0.968	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14348408	X_14348408_SNP [dm3] X_14454375_SNP [dm6]	A	G	3.214e^-4	0.968	INTRON dpr8
3R	13453214	3R_13453214_INS [dm3] 3R_17627492_INS [dm6]	A	AT	3.215e^-4	0.968	INTRON CG14325	TF binding site mE1_TFBS_chinmo
3L	6765765	3L_6765765_SNP [dm3] 3L_6772665_SNP [dm6]	C	T	3.221e^-4	0.968	INTERGENIC
3L	19857731	3L_19857731_SNP [dm3] 3L_19864631_SNP [dm6]	A	T	3.222e^-4	0.968	INTERGENIC	transposable element FlyBase
3R	22014987	3R_22014987_SNP [dm3] 3R_26189265_SNP [dm6]	A	G	3.223e^-4	0.968	SYNONYMOUS_CODING CG34130 UPSTREAM CG6073 DOWNSTREAM CG34129	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	7380416	2L_7380416_SNP [dm3] 2L_7380416_SNP [dm6]	G	C	3.225e^-4	0.968	SYNONYMOUS_CODING ninaC
X	21437501	X_21437501_SNP [dm3] X_21566474_SNP [dm6]	T	C	3.237e^-4	0.968	INTERGENIC
3R	7159503	3R_7159503_SNP [dm3] 3R_11333781_SNP [dm6]	A	C	3.248e^-4	0.968	INTRON pros
3R	20208541	3R_20208541_SNP [dm3] 3R_24382819_SNP [dm6]	A	C	3.249e^-4	0.968	DOWNSTREAM CG17780 INTERGENIC
2L	6745107	2L_6745107_SNP [dm3] 2L_6745107_SNP [dm6]	G	A	3.268e^-4	0.968	SPLICE_SITE_REGION CG31910 SYNONYMOUS_CODING CG31910 DOWNSTREAM snoRNA:Me28S-G2743 INTRON CG11221	TF binding site mE1_TFBS_sens
X	16096705	X_16096705_SNP [dm3] X_16202672_SNP [dm6]	T	C	3.268e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15390549	2L_15390549_SNP [dm3] 2L_15390549_SNP [dm6]	T	A	3.270e^-4	0.968	INTERGENIC
3L	6501961	3L_6501961_SNP [dm3] 3L_6508861_SNP [dm6]	T	G	3.272e^-4	0.968	INTRON sfl
2R	14580573	2R_14580573_SNP [dm3] 2R_18693068_SNP [dm6]	G	C	3.273e^-4	0.968	INTRON Sik3
3L	12569543	3L_12569543_SNP [dm3] 3L_12576443_SNP [dm6]	C	T	3.285e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_kn
2L	19970248	2L_19970248_SNP [dm3] 2L_19970248_SNP [dm6]	A	G	3.296e^-4	0.968	UTR_3_PRIME CG43861 INTRON CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8005222	3L_8005222_SNP [dm3] 3L_8012122_SNP [dm6]	T	C	3.302e^-4	0.968	INTRON nmo
3R	17732321	3R_17732321_SNP [dm3] 3R_21906599_SNP [dm6]	T	C	3.318e^-4	0.968	UTR_3_PRIME CG6678
2L	12156878	2L_12156878_DEL [dm3] 2L_12156878_DEL [dm6]	AC	A	3.319e^-4	0.968	INTRON CG31760
2R	17941301	2R_17941301_SNP [dm3] 2R_22053796_SNP [dm6]	T	C	3.320e^-4	0.968	INTERGENIC
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	3.322e^-4	0.968	INTRON CG7720
2R	17597800	2R_17597800_SNP [dm3] 2R_21710295_SNP [dm6]	A	G	3.325e^-4	0.968	SYNONYMOUS_CODING CG30403 UPSTREAM CR44749 INTRON HmgD	TF binding site BDTNP1_TFBS_dl
3R	19779723	3R_19779723_SNP [dm3] 3R_23954001_SNP [dm6]	A	G	3.326e^-4	0.968	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
3R	9867046	3R_9867046_DEL [dm3] 3R_14041324_DEL [dm6]	TT	T	3.331e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2402260	3L_2402260_SNP [dm3] 3L_2402260_SNP [dm6]	C	G	3.349e^-4	0.968	INTRON CG45186	TF binding site mE1_TFBS_cad
3L	10836696	3L_10836696_INS [dm3] 3L_10843596_INS [dm6]	C	CAAGTC	3.356e^-4	0.968	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	6518605	X_6518605_SNP [dm3] X_6624572_SNP [dm6]	G	A	3.357e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	19113908	X_19113908_SNP [dm3] X_19219875_SNP [dm6]	T	A	3.357e^-4	0.968	UPSTREAM CG7884 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5730944	3L_5730944_SNP [dm3] 3L_5737844_SNP [dm6]	A	T	3.360e^-4	0.968	INTRON sif
3R	21727906	3R_21727906_SNP [dm3] 3R_25902184_SNP [dm6]	T	C	3.368e^-4	0.968	UPSTREAM CG31089 DOWNSTREAM CR43259 & 1 other INTERGENIC
2R	15384524	2R_15384524_SNP [dm3] 2R_19497019_SNP [dm6]	T	C	3.375e^-4	0.968	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12859561	2R_12859561_SNP [dm3] 2R_16972056_SNP [dm6]	T	C	3.383e^-4	0.968	DOWNSTREAM CR44377 INTERGENIC
3L	18062598	3L_18062598_SNP [dm3] 3L_18069498_SNP [dm6]	G	A	3.388e^-4	0.968	DOWNSTREAM CG44005 INTRON CG44006
3L	8583782	3L_8583782_SNP [dm3] 3L_8590682_SNP [dm6]	G	A	3.391e^-4	0.968	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo
3L	6496954	3L_6496954_SNP [dm3] 3L_6503854_SNP [dm6]	C	T	3.391e^-4	0.968	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2R	20051031	2R_20051031_INS [dm3] 2R_24163508_INS [dm6]	A	AG	3.393e^-4	0.968	INTRON CG3328	TF binding site mE1_TFBS_chinmo
X	12883778	X_12883778_SNP [dm3] X_12989745_SNP [dm6]	G	A	3.398e^-4	0.968	INTRON rad	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4130028	3L_4130028_SNP [dm3] 3L_4130028_SNP [dm6]	C	T	3.399e^-4	0.968	INTRON ens
3R	20197347	3R_20197347_SNP [dm3] 3R_24371625_SNP [dm6]	C	T	3.399e^-4	0.968	DOWNSTREAM CG13614 INTRON CG17782
3L	17478170	3L_17478170_SNP [dm3] 3L_17485070_SNP [dm6]	T	G	3.401e^-4	0.968	INTRON CG6333
3R	12109560	3R_12109560_SNP [dm3] 3R_16283838_SNP [dm6]	C	A	3.415e^-4	0.968	INTRON gish
2R	15048800	2R_15048800_SNP [dm3] 2R_19161295_SNP [dm6]	C	T	3.415e^-4	0.968	SYNONYMOUS_CODING ena
3R	19075414	3R_19075414_SNP [dm3] 3R_23249692_SNP [dm6]	C	A	3.417e^-4	0.968	UPSTREAM CG4467 INTRON CG4449	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6653488	3L_6653488_SNP [dm3] 3L_6660388_SNP [dm6]	C	A	3.418e^-4	0.968	INTERGENIC
X	6518595	X_6518595_SNP [dm3] X_6624562_SNP [dm6]	A	C	3.418e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12665602	2R_12665602_SNP [dm3] 2R_16778097_SNP [dm6]	A	G	3.423e^-4	0.968	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14886572	3R_14886572_SNP [dm3] 3R_19060850_SNP [dm6]	C	G	3.426e^-4	0.968	INTRON cdi	TF binding site BDTNP1_TFBS_twi
3R	14621501	3R_14621501_SNP [dm3] 3R_18795779_SNP [dm6]	A	T	3.443e^-4	0.968	UPSTREAM CG7720 INTERGENIC
2R	20357887	2R_20357887_SNP [dm3] 2R_24470364_SNP [dm6]	T	G	3.443e^-4	0.968	INTRON CG13579
2L	19907165	2L_19907165_SNP [dm3] 2L_19907165_SNP [dm6]	A	T	3.447e^-4	0.968	INTRON sick
3R	24134842	3R_24134842_SNP [dm3] 3R_28309120_SNP [dm6]	C	T	3.448e^-4	0.968	INTERGENIC
X	10596260	X_10596260_SNP [dm3] X_10702227_SNP [dm6]	A	T	3.450e^-4	0.968	INTRON X11Lbeta
2R	14580657	2R_14580657_SNP [dm3] 2R_18693152_SNP [dm6]	C	T	3.458e^-4	0.968	INTRON Sik3
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	3.458e^-4	0.968	INTERGENIC
X	15731365	X_15731365_SNP [dm3] X_15837332_SNP [dm6]	T	C	3.458e^-4	0.968	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
3R	8477828	3R_8477828_SNP [dm3] 3R_12652106_SNP [dm6]	T	C	3.459e^-4	0.968	SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
3R	8477845	3R_8477845_SNP [dm3] 3R_12652123_SNP [dm6]	G	A	3.459e^-4	0.968	NON_SYNONYMOUS_CODING Dtg	TF binding site mE1_TFBS_sens
2L	20067536	2L_20067536_SNP [dm3] 2L_20067536_SNP [dm6]	G	C	3.467e^-4	0.968	INTRON bwa	TF binding site BDTNP1_TFBS_da
2R	15237280	2R_15237280_SNP [dm3] 2R_19349775_SNP [dm6]	G	A	3.470e^-4	0.968	START_GAINED Rgk1 UTR_5_PRIME Rgk1
3R	14040896	3R_14040896_INS [dm3] 3R_18215174_INS [dm6]	A	ATA	3.474e^-4	0.968	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC	transposable element FlyBase
2R	14496921	2R_14496921_SNP [dm3] 2R_18609416_SNP [dm6]	A	G	3.475e^-4	0.968	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22899429	3R_22899429_SNP [dm3] 3R_27073707_SNP [dm6]	C	T	3.483e^-4	0.968	INTERGENIC
3L	2172304	3L_2172304_SNP [dm3] 3L_2172304_SNP [dm6]	C	T	3.483e^-4	0.968	DOWNSTREAM CG15820 EXON CR15821
2R	18700076	2R_18700076_SNP [dm3] 2R_22812571_SNP [dm6]	G	A	3.488e^-4	0.968	INTRON stl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1717804	2L_1717804_SNP [dm3] 2L_1717804_SNP [dm6]	T	C	3.506e^-4	0.968	SYNONYMOUS_CODING Rim2
2R	16462798	2R_16462798_SNP [dm3] 2R_20575293_SNP [dm6]	C	T	3.508e^-4	0.968	INTRON qsm
2L	7143354	2L_7143354_SNP [dm3] 2L_7143354_SNP [dm6]	T	C	3.526e^-4	0.968	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5009381	2L_5009381_SNP [dm3] 2L_5009381_SNP [dm6]	A	C	3.526e^-4	0.968	UTR_5_PRIME Rtnl1 DOWNSTREAM CG31917 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24827437	3R_24827437_SNP [dm3] 3R_29001715_SNP [dm6]	A	G	3.539e^-4	0.968	INTRON wat
3R	17629650	3R_17629650_SNP [dm3] 3R_21803928_SNP [dm6]	G	A	3.547e^-4	0.968	NON_SYNONYMOUS_CODING CASK INTRON CASK	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	17590810	X_17590810_SNP [dm3] X_17696777_SNP [dm6]	G	C	3.550e^-4	0.968	INTRON chas
3R	19858768	3R_19858768_SNP [dm3] 3R_24033046_SNP [dm6]	T	A	3.552e^-4	0.968	SYNONYMOUS_CODING Ime4	TF binding site BDTNP1_TFBS_Med
3R	8930676	3R_8930676_SNP [dm3] 3R_13104954_SNP [dm6]	G	T	3.552e^-4	0.968	INTRON timeout
2L	15638577	2L_15638577_SNP [dm3] 2L_15638577_SNP [dm6]	T	C	3.552e^-4	0.968	INTERGENIC
3L	10389882	3L_10389882_SNP [dm3] 3L_10396782_SNP [dm6]	G	T	3.563e^-4	0.968	INTERGENIC
3R	17319643	3R_17319643_SNP [dm3] 3R_21493921_SNP [dm6]	A	C	3.566e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18877963	X_18877963_SNP [dm3] X_18983930_SNP [dm6]	C	T	3.573e^-4	0.968	INTRON CG43759
X	17777647	X_17777647_SNP [dm3] X_17883614_SNP [dm6]	G	A	3.574e^-4	0.968	UPSTREAM CG12985 INTRON mnb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21549626	3L_21549626_SNP [dm3] 3L_21556526_SNP [dm6]	G	C	3.578e^-4	0.968	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
3L	7874674	3L_7874674_SNP [dm3] 3L_7881574_SNP [dm6]	A	G	3.580e^-4	0.968	INTRON CG32365
2R	17052611	2R_17052611_SNP [dm3] 2R_21165106_SNP [dm6]	C	T	3.586e^-4	0.968	INTRON CG4266	TF binding site mE1_TFBS_cad
2L	19366471	2L_19366471_SNP [dm3] 2L_19366471_SNP [dm6]	A	T	3.589e^-4	0.968	INTERGENIC
2L	6949528	2L_6949528_SNP [dm3] 2L_6949528_SNP [dm6]	C	T	3.590e^-4	0.968	SYNONYMOUS_CODING Gas41 UPSTREAM ihog & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20046335	2L_20046335_SNP [dm3] 2L_20046335_SNP [dm6]	G	T	3.592e^-4	0.968	INTRON sNPF
2R	16418420	2R_16418420_SNP [dm3] 2R_20530915_SNP [dm6]	A	G	3.592e^-4	0.968	UPSTREAM CR44651 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10833200	3L_10833200_SNP [dm3] 3L_10840100_SNP [dm6]	G	A	3.612e^-4	0.968	INTERGENIC
3R	26701010	3R_26701010_DEL [dm3] 3R_30875288_DEL [dm6]	CACGATCCTC	C	3.614e^-4	0.968	CODON_DELETION CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12162826	2L_12162826_SNP [dm3] 2L_12162826_SNP [dm6]	T	C	3.625e^-4	0.968	SYNONYMOUS_CODING CG31760 DOWNSTREAM CG31861
3L	6498227	3L_6498227_SNP [dm3] 3L_6505127_SNP [dm6]	G	T	3.633e^-4	0.968	SPLICE_SITE_REGION sfl INTRON sfl	TF binding site BDTNP1_TFBS_dl
3L	11315014	3L_11315014_SNP [dm3] 3L_11321914_SNP [dm6]	T	A	3.651e^-4	0.968	UPSTREAM CG6168 INTERGENIC
3L	6721023	3L_6721023_SNP [dm3] 3L_6727923_SNP [dm6]	G	A	3.658e^-4	0.968	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10213860	X_10213860_DEL [dm3] X_10319827_DEL [dm6]	TG	T	3.659e^-4	0.968	INTRON alpha-Man-I
X	21448896	X_21448896_SNP [dm3] X_21577869_SNP [dm6]	A	G	3.662e^-4	0.968	INTERGENIC
2R	7826089	2R_7826089_SNP [dm3] 2R_11938584_SNP [dm6]	A	T	3.679e^-4	0.968	UPSTREAM CG13188 INTERGENIC
3L	10999698	3L_10999698_DEL [dm3] 3L_11006598_DEL [dm6]	GT	G	3.681e^-4	0.968	INTRON klu
X	2357985	X_2357985_INS [dm3] X_2463952_INS [dm6]	T	TTT	3.687e^-4	0.968	INTRON boi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23253202	3R_23253202_SNP [dm3] 3R_27427480_SNP [dm6]	C	T	3.690e^-4	0.968	INTRON side
3L	12800965	3L_12800965_SNP [dm3] 3L_12807865_SNP [dm6]	C	T	3.692e^-4	0.968	UPSTREAM CG32110 INTRON Sap130	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
3R	20392499	3R_20392499_SNP [dm3] 3R_24566777_SNP [dm6]	A	G	3.703e^-4	0.968	INTRON CG13624	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16458926	2R_16458926_SNP [dm3] 2R_20571421_SNP [dm6]	T	A	3.706e^-4	0.968	INTRON qsm
3L	1091744	3L_1091744_SNP [dm3] 3L_1091744_SNP [dm6]	A	G	3.719e^-4	0.968	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	14348405	X_14348405_SNP [dm3] X_14454372_SNP [dm6]	G	C	3.723e^-4	0.968	INTRON dpr8
3L	5661350	3L_5661350_SNP [dm3] 3L_5668250_SNP [dm6]	A	G	3.731e^-4	0.968	INTRON sif
3R	27292695	3R_27292695_SNP [dm3] 3R_31466973_SNP [dm6]	A	C	3.732e^-4	0.968	INTERGENIC
2R	17542392	2R_17542392_SNP [dm3] 2R_21654887_SNP [dm6]	G	A	3.734e^-4	0.968	SYNONYMOUS_CODING CG10082	TF binding site mE1_TFBS_cad
X	12141720	X_12141720_SNP [dm3] X_12247687_SNP [dm6]	A	G	3.741e^-4	0.968	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	20135482	2L_20135482_SNP [dm3] 2L_20135482_SNP [dm6]	T	C	3.742e^-4	0.968	UPSTREAM CG10651 INTERGENIC
2R	12004296	2R_12004296_SNP [dm3] 2R_16116791_SNP [dm6]	G	A	3.743e^-4	0.968	UTR_3_PRIME Asph UPSTREAM Jhedup
2L	9995327	2L_9995327_SNP [dm3] 2L_9995327_SNP [dm6]	G	A	3.754e^-4	0.968	UTR_3_PRIME bib DOWNSTREAM CG31875
3L	8824762	3L_8824762_SNP [dm3] 3L_8831662_SNP [dm6]	T	C	3.761e^-4	0.968	INTRON dally
X	18988182	X_18988182_DEL [dm3] X_19094149_DEL [dm6]	ATGACTACG	A	3.775e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6760332	3L_6760332_SNP [dm3] 3L_6767232_SNP [dm6]	C	G	3.777e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	16442963	2R_16442963_SNP [dm3] 2R_20555458_SNP [dm6]	A	T	3.783e^-4	0.968	INTERGENIC
2L	19897691	2L_19897691_SNP [dm3] 2L_19897691_SNP [dm6]	G	C	3.785e^-4	0.968	INTRON sick
2L	18510927	2L_18510927_SNP [dm3] 2L_18510927_SNP [dm6]	T	C	3.786e^-4	0.968	INTRON CG10178
3L	8133266	3L_8133266_SNP [dm3] 3L_8140166_SNP [dm6]	A	T	3.792e^-4	0.968	INTRON mus301	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26413578	3R_26413578_SNP [dm3] 3R_30587856_SNP [dm6]	C	A	3.807e^-4	0.968	UPSTREAM CG9717 INTERGENIC
3L	10833192	3L_10833192_SNP [dm3] 3L_10840092_SNP [dm6]	A	T	3.814e^-4	0.968	INTERGENIC
2R	15260899	2R_15260899_SNP [dm3] 2R_19373394_SNP [dm6]	C	T	3.816e^-4	0.968	UPSTREAM CG9416 INTRON CG9416	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	3.818e^-4	0.968	INTRON CG42788
3L	11939482	3L_11939482_SNP [dm3] 3L_11946382_SNP [dm6]	A	T	3.819e^-4	0.968	UPSTREAM mir-285 INTERGENIC
3L	11150867	3L_11150867_SNP [dm3] 3L_11157767_SNP [dm6]	A	C	3.823e^-4	0.968	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	3688790	3L_3688790_SNP [dm3] 3L_3688790_SNP [dm6]	A	T	3.825e^-4	0.968	EXON CR43484
X	6518593	X_6518593_SNP [dm3] X_6624560_SNP [dm6]	T	C	3.825e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15244958	2R_15244958_SNP [dm3] 2R_19357453_SNP [dm6]	G	A	3.833e^-4	0.968	UPSTREAM Rgk1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26111515	3R_26111515_SNP [dm3] 3R_30285793_SNP [dm6]	G	A	3.858e^-4	0.968	INTRON hdc
3L	9111366	3L_9111366_SNP [dm3] 3L_9118266_SNP [dm6]	G	A	3.869e^-4	0.968	INTRON bol
2L	10413528	2L_10413528_SNP [dm3] 2L_10413528_SNP [dm6]	C	T	3.871e^-4	0.968	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	7490591	2R_7490591_SNP [dm3] 2R_11603086_SNP [dm6]	T	A	3.872e^-4	0.968	INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11585536	3L_11585536_SNP [dm3] 3L_11592436_SNP [dm6]	A	T	3.877e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3R	14681089	3R_14681089_SNP [dm3] 3R_18855367_SNP [dm6]	G	C	3.877e^-4	0.968	INTERGENIC
3R	14681095	3R_14681095_SNP [dm3] 3R_18855373_SNP [dm6]	T	A	3.877e^-4	0.968	INTERGENIC
3R	7159414	3R_7159414_SNP [dm3] 3R_11333692_SNP [dm6]	C	T	3.880e^-4	0.968	INTRON pros
3R	19860458	3R_19860458_SNP [dm3] 3R_24034736_SNP [dm6]	A	G	3.881e^-4	0.968	UTR_3_PRIME Miro DOWNSTREAM Ime4
X	10596259	X_10596259_SNP [dm3] X_10702226_SNP [dm6]	T	G	3.882e^-4	0.968	INTRON X11Lbeta
2L	12892570	2L_12892570_SNP [dm3] 2L_12892570_SNP [dm6]	T	C	3.883e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18654240	2L_18654240_SNP [dm3] 2L_18654240_SNP [dm6]	C	A	3.889e^-4	0.968	INTRON MESR3	TF binding site mE1_TFBS_cnc
3L	6501883	3L_6501883_SNP [dm3] 3L_6508783_SNP [dm6]	G	A	3.889e^-4	0.968	INTRON sfl
3L	9948967	3L_9948967_INS [dm3] 3L_9955867_INS [dm6]	G	GAGAGCTTTGG...	3.891e^-4	0.968	INTRON CG34356
X	16052627	X_16052627_SNP [dm3] X_16158594_SNP [dm6]	T	C	3.898e^-4	0.968	INTERGENIC
2L	15372952	2L_15372952_SNP [dm3] 2L_15372952_SNP [dm6]	T	A	3.899e^-4	0.968	INTERGENIC
2L	15372953	2L_15372953_SNP [dm3] 2L_15372953_SNP [dm6]	A	G	3.914e^-4	0.968	INTERGENIC
3R	13410627	3R_13410627_SNP [dm3] 3R_17584905_SNP [dm6]	A	C	3.916e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10920622	3L_10920622_SNP [dm3] 3L_10927522_SNP [dm6]	T	G	3.916e^-4	0.968	INTERGENIC
X	14165881	X_14165881_SNP [dm3] X_14271848_SNP [dm6]	A	G	3.918e^-4	0.968	SYNONYMOUS_CODING na	TF binding site mE1_TFBS_chinmo
X	6425306	X_6425306_SNP [dm3] X_6531273_SNP [dm6]	G	A	3.920e^-4	0.968	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
2L	15593910	2L_15593910_SNP [dm3] 2L_15593910_SNP [dm6]	A	T	3.937e^-4	0.968	INTERGENIC
3R	12837460	3R_12837460_SNP [dm3] 3R_17011738_SNP [dm6]	C	T	3.942e^-4	0.968	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
3R	16438406	3R_16438406_SNP [dm3] 3R_20612684_SNP [dm6]	T	C	3.943e^-4	0.968	SYNONYMOUS_CODING CG15923 DOWNSTREAM bon
3R	16253268	3R_16253268_SNP [dm3] 3R_20427546_SNP [dm6]	A	T	3.944e^-4	0.968	INTRON Gfrl
3L	10820484	3L_10820484_SNP [dm3] 3L_10827384_SNP [dm6]	G	A	3.952e^-4	0.968	INTERGENIC
2R	17542561	2R_17542561_SNP [dm3] 2R_21655056_SNP [dm6]	T	A	3.957e^-4	0.968	INTRON CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3416525	3L_3416525_SNP [dm3] 3L_3416525_SNP [dm6]	A	C	3.961e^-4	0.968	INTRON sty
2L	13961300	2L_13961300_SNP [dm3] 2L_13961300_SNP [dm6]	T	C	3.963e^-4	0.968	SYNONYMOUS_CODING NimA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13441026	2R_13441026_SNP [dm3] 2R_17553521_SNP [dm6]	G	A	3.965e^-4	0.968	SYNONYMOUS_CODING MESR4
3R	27292733	3R_27292733_SNP [dm3] 3R_31467011_SNP [dm6]	G	A	3.969e^-4	0.968	INTERGENIC
2L	15637434	2L_15637434_SNP [dm3] 2L_15637434_SNP [dm6]	G	T	3.975e^-4	0.968	INTERGENIC
2R	16513906	2R_16513906_SNP [dm3] 2R_20626401_SNP [dm6]	T	A	3.975e^-4	0.968	SYNONYMOUS_CODING CG16742
X	12374473	X_12374473_SNP [dm3] X_12480440_SNP [dm6]	T	C	3.978e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10852534	3L_10852534_SNP [dm3] 3L_10859434_SNP [dm6]	T	C	3.984e^-4	0.968	INTRON tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_sbb
2L	3413153	2L_3413153_DEL [dm3] 2L_3413153_DEL [dm6]	GTGCCCGAAGGCCCAG...	G	3.986e^-4	0.968	INTRON pgant2
3R	1079048	3R_1079048_SNP [dm3] 3R_5253326_SNP [dm6]	A	G	3.990e^-4	0.968	UTR_5_PRIME CG1113 UPSTREAM CG1113
2L	11185829	2L_11185829_SNP [dm3] 2L_11185829_SNP [dm6]	A	G	3.990e^-4	0.968	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	1757100	2L_1757100_SNP [dm3] 2L_1757100_SNP [dm6]	C	T	4.006e^-4	0.968	UPSTREAM Gr22f INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	2706852	2L_2706852_SNP [dm3] 2L_2706852_SNP [dm6]	A	T	4.013e^-4	0.968	INTRON CG31690
3R	20208507	3R_20208507_SNP [dm3] 3R_24382785_SNP [dm6]	G	A	4.017e^-4	0.968	DOWNSTREAM CG17780 INTERGENIC
3R	20197946	3R_20197946_SNP [dm3] 3R_24372224_SNP [dm6]	C	G	4.021e^-4	0.968	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20365546	2R_20365546_SNP [dm3] 2R_24478023_SNP [dm6]	T	G	4.023e^-4	0.968	INTRON CG13579	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21081284	X_21081284_SNP [dm3] X_21210257_SNP [dm6]	A	T	4.027e^-4	0.968	INTRON CG32521
3L	11585604	3L_11585604_SNP [dm3] 3L_11592504_SNP [dm6]	T	A	4.034e^-4	0.968	DOWNSTREAM CR45443 & 1 other EXON CR45672 & 1 other
3L	4176652	3L_4176652_SNP [dm3] 3L_4176652_SNP [dm6]	C	T	4.040e^-4	0.968	SYNONYMOUS_CODING Teh4 INTRON CG18675
3R	15637381	3R_15637381_DEL [dm3] 3R_19811659_DEL [dm6]	AA	A	4.045e^-4	0.968	INTRON bnl
3R	4679173	3R_4679173_SNP [dm3] 3R_8853451_SNP [dm6]	C	A	4.053e^-4	0.968	INTRON pyd
3L	19417828	3L_19417828_SNP [dm3] 3L_19424728_SNP [dm6]	T	C	4.059e^-4	0.968	UPSTREAM CR32205 DOWNSTREAM CG33255 EXON CR42838
3R	10926676	3R_10926676_SNP [dm3] 3R_15100954_SNP [dm6]	T	C	4.061e^-4	0.968	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8419499	3L_8419499_SNP [dm3] 3L_8426399_SNP [dm6]	A	C	4.067e^-4	0.968	SPLICE_SITE_REGION Cbl INTRON Cbl
3L	1748333	3L_1748333_SNP [dm3] 3L_1748333_SNP [dm6]	C	G	4.069e^-4	0.968	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10846847	3L_10846847_SNP [dm3] 3L_10853747_SNP [dm6]	T	A	4.070e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	13529011	2L_13529011_SNP [dm3] 2L_13529011_SNP [dm6]	C	T	4.079e^-4	0.968	UPSTREAM CG33641 & 1 other DOWNSTREAM CG33640 INTRON B4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15384486	2R_15384486_SNP [dm3] 2R_19496981_SNP [dm6]	C	G	4.080e^-4	0.968	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3688849	3L_3688849_SNP [dm3] 3L_3688849_SNP [dm6]	A	T	4.084e^-4	0.968	EXON CR43484
2L	10236230	2L_10236230_SNP [dm3] 2L_10236230_SNP [dm6]	G	A	4.087e^-4	0.968	SYNONYMOUS_CODING mthl15 UTR_3_PRIME mthl15	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16283086	3R_16283086_SNP [dm3] 3R_20457364_SNP [dm6]	A	C	4.093e^-4	0.968	INTRON Gfrl	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	3761075	2L_3761075_SNP [dm3] 2L_3761075_SNP [dm6]	A	G	4.097e^-4	0.968	INTRON CG43707	TF binding site mE1_TFBS_chinmo
X	6518558	X_6518558_SNP [dm3] X_6624525_SNP [dm6]	C	T	4.120e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	21897673	X_21897673_SNP [dm3] X_22495837_SNP [dm6]	A	G	4.141e^-4	0.968	SYNONYMOUS_CODING l_1_G0196
2R	19716887	2R_19716887_SNP [dm3] 2R_23829364_SNP [dm6]	A	T	4.142e^-4	0.968	INTRON CG5549
2R	12738823	2R_12738823_SNP [dm3] 2R_16851318_SNP [dm6]	G	A	4.157e^-4	0.968	INTRON IntS8	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16442826	2R_16442826_SNP [dm3] 2R_20555321_SNP [dm6]	C	A	4.158e^-4	0.968	INTERGENIC
3L	10832061	3L_10832061_SNP [dm3] 3L_10838961_SNP [dm6]	G	C	4.161e^-4	0.968	INTERGENIC
3L	806464	3L_806464_SNP [dm3] 3L_806464_SNP [dm6]	C	A	4.163e^-4	0.968	INTERGENIC
2L	9779182	2L_9779182_INS [dm3] 2L_9779182_INS [dm6]	T	AAA	4.163e^-4	0.968	INTERGENIC
3L	13337104	3L_13337104_SNP [dm3] 3L_13344004_SNP [dm6]	A	T	4.177e^-4	0.968	INTRON CR44559
3L	8610860	3L_8610860_SNP [dm3] 3L_8617760_SNP [dm6]	C	T	4.183e^-4	0.968	SYNONYMOUS_CODING S-Lap1 DOWNSTREAM CG6282
3L	8640204	3L_8640204_SNP [dm3] 3L_8647104_SNP [dm6]	C	G	4.186e^-4	0.968	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5424427	3L_5424427_SNP [dm3] 3L_5431327_SNP [dm6]	A	T	4.189e^-4	0.968	INTRON CG34391
2R	12114522	2R_12114522_SNP [dm3] 2R_16227017_SNP [dm6]	T	A	4.189e^-4	0.968	UPSTREAM CG15706 INTRON CG15706 & 1 other
2L	15372968	2L_15372968_SNP [dm3] 2L_15372968_SNP [dm6]	C	A	4.198e^-4	0.968	INTERGENIC
3R	24667789	3R_24667789_SNP [dm3] 3R_28842067_SNP [dm6]	C	G	4.201e^-4	0.968	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8640126	3L_8640126_SNP [dm3] 3L_8647026_SNP [dm6]	A	T	4.202e^-4	0.968	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3416470	3L_3416470_DEL [dm3] 3L_3416470_DEL [dm6]	AATTTATTTCC...	A	4.212e^-4	0.968	INTRON sty
2L	19242140	2L_19242140_SNP [dm3] 2L_19242140_SNP [dm6]	C	T	4.221e^-4	0.968	INTERGENIC
2L	1400682	2L_1400682_SNP [dm3] 2L_1400682_SNP [dm6]	C	A	4.227e^-4	0.968	INTRON lea	TF binding site mE1_TFBS_HSA
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	4.231e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	16759955	3R_16759955_SNP [dm3] 3R_20934233_SNP [dm6]	C	A	4.234e^-4	0.968	INTRON CG31191
3L	3632980	3L_3632980_INS [dm3] 3L_3632980_INS [dm6]	G	GA	4.240e^-4	0.968	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17599544	2R_17599544_SNP [dm3] 2R_21712039_SNP [dm6]	G	A	4.245e^-4	0.968	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17599606	2R_17599606_SNP [dm3] 2R_21712101_SNP [dm6]	A	G	4.245e^-4	0.968	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	16566918	2R_16566918_SNP [dm3] 2R_20679413_SNP [dm6]	C	T	4.257e^-4	0.968	INTERGENIC
2R	16493489	2R_16493489_SNP [dm3] 2R_20605984_SNP [dm6]	C	T	4.259e^-4	0.968	UPSTREAM mir-7 DOWNSTREAM Hil & 1 other INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11235974	2L_11235974_SNP [dm3] 2L_11235974_SNP [dm6]	C	T	4.265e^-4	0.968	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24980067	3R_24980067_SNP [dm3] 3R_29154345_SNP [dm6]	C	T	4.265e^-4	0.968	SYNONYMOUS_CODING Rpn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	12651900	3L_12651900_SNP [dm3] 3L_12658800_SNP [dm6]	T	G	4.275e^-4	0.968	UPSTREAM CR44553 INTERGENIC
2R	15384547	2R_15384547_SNP [dm3] 2R_19497042_SNP [dm6]	A	G	4.280e^-4	0.968	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13823902	3R_13823902_SNP [dm3] 3R_17998180_SNP [dm6]	C	T	4.284e^-4	0.968	INTRON cpo	TF binding site mE1_TFBS_Trl
2L	9999383	2L_9999383_SNP [dm3] 2L_9999383_SNP [dm6]	C	T	4.292e^-4	0.968	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
2R	16997214	2R_16997214_SNP [dm3] 2R_21109709_SNP [dm6]	A	T	4.293e^-4	0.968	INTRON ktub
3R	22765509	3R_22765509_SNP [dm3] 3R_26939787_SNP [dm6]	T	C	4.295e^-4	0.968	INTRON sda
3L	18926325	3L_18926325_SNP [dm3] 3L_18933225_SNP [dm6]	G	T	4.308e^-4	0.968	INTRON CG32204
3R	17319657	3R_17319657_SNP [dm3] 3R_21493935_SNP [dm6]	A	G	4.315e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3454617	2L_3454617_SNP [dm3] 2L_3454617_SNP [dm6]	T	C	4.325e^-4	0.968	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
2L	3454818	2L_3454818_SNP [dm3] 2L_3454818_SNP [dm6]	A	G	4.325e^-4	0.968	SYNONYMOUS_CODING Cog3
3L	8634212	3L_8634212_SNP [dm3] 3L_8641112_SNP [dm6]	T	A	4.329e^-4	0.968	INTRON Cpr66D
2L	15511496	2L_15511496_SNP [dm3] 2L_15511496_SNP [dm6]	T	C	4.329e^-4	0.968	INTERGENIC
X	20449579	X_20449579_SNP [dm3] X_20578552_SNP [dm6]	C	T	4.329e^-4	0.968	INTERGENIC
2R	12114532	2R_12114532_SNP [dm3] 2R_16227027_SNP [dm6]	A	C	4.331e^-4	0.968	UPSTREAM CG15706 INTRON CG15706 & 1 other
2L	12892573	2L_12892573_SNP [dm3] 2L_12892573_SNP [dm6]	A	G	4.343e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12668858	2L_12668858_SNP [dm3] 2L_12668858_SNP [dm6]	T	C	4.344e^-4	0.968	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6518572	X_6518572_SNP [dm3] X_6624539_SNP [dm6]	G	C	4.354e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17024971	2R_17024971_SNP [dm3] 2R_21137466_SNP [dm6]	T	C	4.355e^-4	0.968	INTRON Magi
2L	11889738	2L_11889738_SNP [dm3] 2L_11889738_SNP [dm6]	A	G	4.359e^-4	0.968	INTRON Pde1c
2R	20188513	2R_20188513_SNP [dm3] 2R_24300990_SNP [dm6]	C	A	4.372e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2927601	3R_2927601_SNP [dm3] 3R_7101879_SNP [dm6]	T	C	4.372e^-4	0.968	SYNONYMOUS_CODING Alh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	15636997	3R_15636997_SNP [dm3] 3R_19811275_SNP [dm6]	T	C	4.375e^-4	0.968	INTRON bnl
3R	14429468	3R_14429468_SNP [dm3] 3R_18603746_SNP [dm6]	T	A	4.377e^-4	0.968	INTRON qin & 1 other
3L	5232542	3L_5232542_SNP [dm3] 3L_5239442_SNP [dm6]	G	A	4.384e^-4	0.968	INTRON shep
3R	10045129	3R_10045129_SNP [dm3] 3R_14219407_SNP [dm6]	G	C	4.384e^-4	0.968	NON_SYNONYMOUS_CODING CG31326
3L	12721968	3L_12721968_SNP [dm3] 3L_12728868_SNP [dm6]	T	A	4.386e^-4	0.968	INTERGENIC
2L	6800121	2L_6800121_SNP [dm3] 2L_6800121_SNP [dm6]	A	G	4.390e^-4	0.968	DOWNSTREAM CR43610 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
X	2372952	X_2372952_SNP [dm3] X_2478919_SNP [dm6]	G	T	4.396e^-4	0.968	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
3R	18536035	3R_18536035_SNP [dm3] 3R_22710313_SNP [dm6]	C	A	4.401e^-4	0.968	SYNONYMOUS_CODING CG4907 DOWNSTREAM wge	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10170186	2L_10170186_SNP [dm3] 2L_10170186_SNP [dm6]	A	G	4.401e^-4	0.968	INTRON CG44153
2L	17346006	2L_17346006_SNP [dm3] 2L_17346006_SNP [dm6]	A	G	4.402e^-4	0.968	INTERGENIC
2R	16546921	2R_16546921_SNP [dm3] 2R_20659416_SNP [dm6]	G	T	4.404e^-4	0.968	SYNONYMOUS_CODING Lrt
2L	2666316	2L_2666316_SNP [dm3] 2L_2666316_SNP [dm6]	G	C	4.411e^-4	0.968	DOWNSTREAM CG9879 INTERGENIC
2L	19892544	2L_19892544_SNP [dm3] 2L_19892544_SNP [dm6]	A	T	4.434e^-4	0.968	UTR_5_PRIME CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4910322	2R_4910322_SNP [dm3] 2R_9022817_SNP [dm6]	T	C	4.436e^-4	0.968	SYNONYMOUS_CODING CG8170	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	15360608	X_15360608_SNP [dm3] X_15466575_SNP [dm6]	A	G	4.440e^-4	0.968	SYNONYMOUS_CODING CG6299 UTR_3_PRIME CG15642 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9303394	2L_9303394_SNP [dm3] 2L_9303394_SNP [dm6]	A	T	4.442e^-4	0.968	DOWNSTREAM Ggamma30A INTERGENIC
3L	16531244	3L_16531244_SNP [dm3] 3L_16538144_SNP [dm6]	A	T	4.442e^-4	0.968	INTRON CG43373
3R	10902129	3R_10902129_SNP [dm3] 3R_15076407_SNP [dm6]	C	T	4.444e^-4	0.968	INTRON dpr9
2L	15738701	2L_15738701_SNP [dm3] 2L_15738701_SNP [dm6]	C	T	4.444e^-4	0.968	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	12245829	2R_12245829_DEL [dm3] 2R_16358324_DEL [dm6]	TT	T	4.445e^-4	0.968	DOWNSTREAM CR45322 EXON CR43416
3R	5440611	3R_5440611_SNP [dm3] 3R_9614889_SNP [dm6]	A	G	4.451e^-4	0.968	INTRON CG8312
3R	26728196	3R_26728196_SNP [dm3] 3R_30902474_SNP [dm6]	C	A	4.461e^-4	0.968	UPSTREAM CG33483 INTERGENIC
2L	6537988	2L_6537988_SNP [dm3] 2L_6537988_SNP [dm6]	G	C	4.467e^-4	0.968	INTRON eya	TF binding site mE1_TFBS_sens
2R	19391981	2R_19391981_SNP [dm3] 2R_23504458_SNP [dm6]	G	A	4.474e^-4	0.968	DOWNSTREAM CG13559 INTERGENIC
X	5915176	X_5915176_SNP [dm3] X_6021143_SNP [dm6]	T	G	4.484e^-4	0.968	INTERGENIC
2R	12473053	2R_12473053_SNP [dm3] 2R_16585548_SNP [dm6]	C	T	4.490e^-4	0.968	UPSTREAM RpLP2 DOWNSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	15730654	2L_15730654_SNP [dm3] 2L_15730654_SNP [dm6]	A	C	4.499e^-4	0.968	NON_SYNONYMOUS_CODING CycE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14457892	3L_14457892_SNP [dm3] 3L_14464792_SNP [dm6]	C	T	4.500e^-4	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17753453	3R_17753453_SNP [dm3] 3R_21927731_SNP [dm6]	A	G	4.501e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	19176771	3R_19176771_SNP [dm3] 3R_23351049_SNP [dm6]	G	A	4.507e^-4	0.968	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22899673	3R_22899673_SNP [dm3] 3R_27073951_SNP [dm6]	A	G	4.512e^-4	0.968	INTERGENIC
3L	10037888	3L_10037888_SNP [dm3] 3L_10044788_SNP [dm6]	A	T	4.519e^-4	0.968	INTRON dpr6
2L	12157015	2L_12157015_DEL [dm3] 2L_12157015_DEL [dm6]	TATACTGA	T	4.521e^-4	0.968	INTRON CG31760
X	16985515	X_16985515_SNP [dm3] X_17091482_SNP [dm6]	T	A	4.525e^-4	0.968	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14348488	X_14348488_INS [dm3] X_14454455_INS [dm6]	T	TGAGCACATTT...	4.532e^-4	0.968	INTRON dpr8
3R	15639700	3R_15639700_SNP [dm3] 3R_19813978_SNP [dm6]	T	C	4.535e^-4	0.968	INTRON bnl
3L	18929257	3L_18929257_SNP [dm3] 3L_18936157_SNP [dm6]	G	A	4.537e^-4	0.968	INTRON CG32204
3L	4079828	3L_4079828_SNP [dm3] 3L_4079828_SNP [dm6]	T	G	4.542e^-4	0.968	INTRON Gad1
3L	19858002	3L_19858002_SNP [dm3] 3L_19864902_SNP [dm6]	G	T	4.555e^-4	0.968	INTERGENIC	transposable element FlyBase
3R	19135658	3R_19135658_SNP [dm3] 3R_23309936_SNP [dm6]	A	G	4.569e^-4	0.968	INTRON pnt	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15285980	2R_15285980_SNP [dm3] 2R_19398475_SNP [dm6]	T	G	4.575e^-4	0.968	UTR_3_PRIME hts DOWNSTREAM hts
2L	20376863	2L_20376863_SNP [dm3] 2L_20376863_SNP [dm6]	G	A	4.583e^-4	0.968	DOWNSTREAM CG16798 INTERGENIC
2L	12579714	2L_12579714_SNP [dm3] 2L_12579714_SNP [dm6]	T	C	4.584e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	23294015	3R_23294015_SNP [dm3] 3R_27468293_SNP [dm6]	T	C	4.587e^-4	0.968	INTERGENIC
2L	9779275	2L_9779275_SNP [dm3] 2L_9779275_SNP [dm6]	C	T	4.588e^-4	0.968	INTERGENIC
3L	7253809	3L_7253809_SNP [dm3] 3L_7260709_SNP [dm6]	A	G	4.595e^-4	0.968	INTRON CG14830
3R	23269104	3R_23269104_SNP [dm3] 3R_27443382_SNP [dm6]	T	A	4.596e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12678139	3R_12678139_SNP [dm3] 3R_16852417_SNP [dm6]	A	G	4.598e^-4	0.968	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12678188	3R_12678188_SNP [dm3] 3R_16852466_SNP [dm6]	T	G	4.598e^-4	0.968	INTRON iab-8 & 1 other EXON iab-4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24094219	3R_24094219_SNP [dm3] 3R_28268497_SNP [dm6]	A	G	4.609e^-4	0.968	INTERGENIC
2L	1669112	2L_1669112_INS [dm3] 2L_1669112_INS [dm6]	T	TT	4.611e^-4	0.968	INTRON chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	17025239	2R_17025239_SNP [dm3] 2R_21137734_SNP [dm6]	C	T	4.617e^-4	0.968	INTRON Magi
2L	19879742	2L_19879742_INS [dm3] 2L_19879742_INS [dm6]	A	AT	4.636e^-4	0.968	INTRON sick
3R	17750276	3R_17750276_SNP [dm3] 3R_21924554_SNP [dm6]	C	T	4.636e^-4	0.968	INTERGENIC
2L	20135541	2L_20135541_SNP [dm3] 2L_20135541_SNP [dm6]	A	C	4.639e^-4	0.968	UPSTREAM CG10651 INTERGENIC
2L	19870226	2L_19870226_SNP [dm3] 2L_19870226_SNP [dm6]	C	A	4.653e^-4	0.968	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13851046	3R_13851046_SNP [dm3] 3R_18025324_SNP [dm6]	C	T	4.667e^-4	0.968	UTR_3_PRIME CG7794
2R	9690776	2R_9690776_SNP [dm3] 2R_13803271_SNP [dm6]	G	A	4.670e^-4	0.968	INTRON Cpr50Cb	TF binding site mE1_TFBS_cad
X	15158511	X_15158511_SNP [dm3] X_15264478_SNP [dm6]	G	T	4.679e^-4	0.968	INTERGENIC
2L	10170070	2L_10170070_SNP [dm3] 2L_10170070_SNP [dm6]	G	A	4.681e^-4	0.968	INTRON CG44153
2L	8348636	2L_8348636_SNP [dm3] 2L_8348636_SNP [dm6]	A	G	4.683e^-4	0.968	INTRON CG7778
3R	12109214	3R_12109214_SNP [dm3] 3R_16283492_SNP [dm6]	A	G	4.687e^-4	0.968	INTRON gish
2L	1402820	2L_1402820_SNP [dm3] 2L_1402820_SNP [dm6]	G	A	4.691e^-4	0.968	INTRON lea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19888123	2L_19888123_SNP [dm3] 2L_19888123_SNP [dm6]	T	A	4.693e^-4	0.968	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15193117	3R_15193117_SNP [dm3] 3R_19367395_SNP [dm6]	A	C	4.694e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	21724528	3R_21724528_SNP [dm3] 3R_25898806_SNP [dm6]	T	C	4.702e^-4	0.968	SYNONYMOUS_CODING MCO3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11701980	3R_11701980_SNP [dm3] 3R_15876258_SNP [dm6]	G	A	4.706e^-4	0.968	UPSTREAM CG31183 INTERGENIC
X	3862846	X_3862846_SNP [dm3] X_3968813_SNP [dm6]	A	G	4.709e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	1646196	2L_1646196_SNP [dm3] 2L_1646196_SNP [dm6]	A	G	4.709e^-4	0.968	DOWNSTREAM CR45695 INTERGENIC
2L	8171510	2L_8171510_SNP [dm3] 2L_8171510_SNP [dm6]	C	T	4.711e^-4	0.968	INTRON Piezo
2R	15384504	2R_15384504_SNP [dm3] 2R_19496999_SNP [dm6]	C	T	4.714e^-4	0.968	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	6518568	X_6518568_SNP [dm3] X_6624535_SNP [dm6]	A	C	4.717e^-4	0.968	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	16615909	X_16615909_SNP [dm3] X_16721876_SNP [dm6]	C	T	4.717e^-4	0.968	UPSTREAM CG34325 INTRON CG32572
3R	12455393	3R_12455393_SNP [dm3] 3R_16629671_SNP [dm6]	T	A	4.725e^-4	0.968	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5642965	X_5642965_SNP [dm3] X_5748932_SNP [dm6]	A	C	4.727e^-4	0.968	INTRON CG4078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19072987	3R_19072987_SNP [dm3] 3R_23247265_SNP [dm6]	C	T	4.731e^-4	0.968	INTRON CG4467
X	3811752	X_3811752_SNP [dm3] X_3917719_SNP [dm6]	A	G	4.742e^-4	0.968	INTRON CG42541
2L	10098946	2L_10098946_SNP [dm3] 2L_10098946_SNP [dm6]	G	T	4.755e^-4	0.968	INTRON CG34109 & 1 other
2R	20627703	2R_20627703_SNP [dm3] 2R_24740180_SNP [dm6]	T	G	4.761e^-4	0.968	UPSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3063126	2L_3063126_SNP [dm3] 2L_3063126_SNP [dm6]	C	G	4.777e^-4	0.968	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16976501	3R_16976501_SNP [dm3] 3R_21150779_SNP [dm6]	A	G	4.779e^-4	0.968	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	15073934	2R_15073934_SNP [dm3] 2R_19186429_SNP [dm6]	A	G	4.789e^-4	0.968	INTRON hppy
2L	3454755	2L_3454755_SNP [dm3] 2L_3454755_SNP [dm6]	A	G	4.791e^-4	0.968	SYNONYMOUS_CODING Cog3 DOWNSTREAM CG12795
3R	8572886	3R_8572886_SNP [dm3] 3R_12747164_SNP [dm6]	G	T	4.800e^-4	0.968	INTRON beat-Vc
2L	10413700	2L_10413700_SNP [dm3] 2L_10413700_SNP [dm6]	G	T	4.807e^-4	0.968	UPSTREAM Klp31E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
X	10082997	X_10082997_INS [dm3] X_10188964_INS [dm6]	A	AGCAGCA	4.812e^-4	0.968	INTRON CR44894
3L	3799035	3L_3799035_SNP [dm3] 3L_3799035_SNP [dm6]	G	A	4.815e^-4	0.968	INTRON CG32264
X	20013760	X_20013760_SNP [dm3] X_20119727_SNP [dm6]	G	A	4.817e^-4	0.968	INTERGENIC
2R	19209603	2R_19209603_SNP [dm3] 2R_23322080_SNP [dm6]	A	G	4.818e^-4	0.968	INTRON CG30416
2R	6326133	2R_6326133_SNP [dm3] 2R_10438628_SNP [dm6]	G	T	4.822e^-4	0.968	UTR_5_PRIME Galphao UPSTREAM Galphao INTRON Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
3R	16034104	3R_16034104_SNP [dm3] 3R_20208382_SNP [dm6]	G	T	4.826e^-4	0.968	NON_SYNONYMOUS_CODING CG17199 INTRON Nlg4
3L	18898485	3L_18898485_SNP [dm3] 3L_18905385_SNP [dm6]	T	C	4.829e^-4	0.968	UTR_5_PRIME CG6841 UPSTREAM CSN1b
3L	11585417	3L_11585417_SNP [dm3] 3L_11592317_SNP [dm6]	T	C	4.834e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3R	12837373	3R_12837373_SNP [dm3] 3R_17011651_SNP [dm6]	C	T	4.836e^-4	0.968	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
3L	16885380	3L_16885380_SNP [dm3] 3L_16892280_SNP [dm6]	G	A	4.845e^-4	0.968	INTRON Lmpt
2R	17614570	2R_17614570_SNP [dm3] 2R_21727065_SNP [dm6]	T	C	4.847e^-4	0.968	DOWNSTREAM CR44750 INTERGENIC
3L	1253114	3L_1253114_SNP [dm3] 3L_1253114_SNP [dm6]	T	C	4.850e^-4	0.968	SYNONYMOUS_CODING CG9130 UTR_5_PRIME CG9133 UPSTREAM CG9133	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8104993	X_8104993_SNP [dm3] X_8210960_SNP [dm6]	T	C	4.852e^-4	0.968	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13374226	3R_13374226_SNP [dm3] 3R_17548504_SNP [dm6]	T	G	4.854e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15796036	X_15796036_SNP [dm3] X_15902003_SNP [dm6]	G	A	4.858e^-4	0.968	SYNONYMOUS_CODING shi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16615943	X_16615943_SNP [dm3] X_16721910_SNP [dm6]	G	C	4.859e^-4	0.968	UPSTREAM CG34325 INTRON CG32572
3R	20501907	3R_20501907_SNP [dm3] 3R_24676185_SNP [dm6]	A	G	4.860e^-4	0.968	INTRON slo
X	9610854	X_9610854_SNP [dm3] X_9716821_SNP [dm6]	C	T	4.861e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	14850681	2R_14850681_SNP [dm3] 2R_18963176_SNP [dm6]	A	C	4.862e^-4	0.968	INTERGENIC
3L	1560975	3L_1560975_SNP [dm3] 3L_1560975_SNP [dm6]	G	T	4.862e^-4	0.968	SYNONYMOUS_CODING CG7879	TF binding site BDTNP1_TFBS_da
2L	4012418	2L_4012418_SNP [dm3] 2L_4012418_SNP [dm6]	G	A	4.865e^-4	0.968	INTERGENIC
3R	16695240	3R_16695240_SNP [dm3] 3R_20869518_SNP [dm6]	T	C	4.868e^-4	0.968	INTERGENIC
X	7978741	X_7978741_SNP [dm3] X_8084708_SNP [dm6]	C	T	4.873e^-4	0.968	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11274672	X_11274672_SNP [dm3] X_11380639_SNP [dm6]	T	C	4.879e^-4	0.968	INTRON dlg1
2L	9938907	2L_9938907_SNP [dm3] 2L_9938907_SNP [dm6]	G	A	4.887e^-4	0.968	UTR_5_PRIME CG4619 UPSTREAM CG31712 & 1 other DOWNSTREAM CR45007	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	6603319	X_6603319_SNP [dm3] X_6709286_SNP [dm6]	T	A	4.894e^-4	0.968	INTRON CG14441	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22899769	3R_22899769_SNP [dm3] 3R_27074047_SNP [dm6]	T	G	4.902e^-4	0.968	INTERGENIC
3L	12008345	3L_12008345_SNP [dm3] 3L_12015245_SNP [dm6]	A	G	4.902e^-4	0.968	INTRON rols
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	4.903e^-4	0.968	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3L	7253810	3L_7253810_SNP [dm3] 3L_7260710_SNP [dm6]	T	A	4.907e^-4	0.968	INTRON CG14830
3L	3416411	3L_3416411_SNP [dm3] 3L_3416411_SNP [dm6]	G	A	4.909e^-4	0.968	INTRON sty
X	5968772	X_5968772_SNP [dm3] X_6074739_SNP [dm6]	G	A	4.914e^-4	0.968	UTR_5_PRIME Tsp5D
2L	1401712	2L_1401712_SNP [dm3] 2L_1401712_SNP [dm6]	T	A	4.916e^-4	0.968	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3416410	3L_3416410_SNP [dm3] 3L_3416410_SNP [dm6]	A	G	4.922e^-4	0.968	INTRON sty
X	5929646	X_5929646_SNP [dm3] X_6035613_SNP [dm6]	C	G	4.928e^-4	0.968	DOWNSTREAM rux INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7437156	2L_7437156_SNP [dm3] 2L_7437156_SNP [dm6]	G	A	4.933e^-4	0.968	UPSTREAM CG5973 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	12892443	2L_12892443_SNP [dm3] 2L_12892443_SNP [dm6]	T	C	4.936e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6893241	3L_6893241_SNP [dm3] 3L_6900141_SNP [dm6]	A	T	4.937e^-4	0.968	INTERGENIC
2L	5014016	2L_5014016_SNP [dm3] 2L_5014016_SNP [dm6]	T	G	4.938e^-4	0.968	NON_SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4130031	3L_4130031_SNP [dm3] 3L_4130031_SNP [dm6]	T	C	4.946e^-4	0.968	INTRON ens
3R	24242183	3R_24242183_SNP [dm3] 3R_28416461_SNP [dm6]	C	A	4.951e^-4	0.968	INTERGENIC
2L	19933914	2L_19933914_SNP [dm3] 2L_19933914_SNP [dm6]	A	T	4.973e^-4	0.968	INTRON sick EXON CR45183
X	5892191	X_5892191_SNP [dm3] X_5998158_SNP [dm6]	A	G	4.980e^-4	0.968	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl
X	2991844	X_2991844_SNP [dm3] X_3097811_SNP [dm6]	G	T	4.983e^-4	0.968	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26710819	3R_26710819_SNP [dm3] 3R_30885097_SNP [dm6]	C	T	4.998e^-4	0.968	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16985452	X_16985452_SNP [dm3] X_17091419_SNP [dm6]	C	A	5.000e^-4	0.968	UPSTREAM CG16700 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	22395711	2L_22395711_DEL [dm3] 2L_22395711_DEL [dm6]	CGACGTAGCGGGTTCGAGAG...	C	5.008e^-4	0.968	INTERGENIC	transposable element FlyBase
X	8106351	X_8106351_SNP [dm3] X_8212318_SNP [dm6]	G	A	5.010e^-4	0.968	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	14610532	2R_14610532_SNP [dm3] 2R_18723027_SNP [dm6]	T	A	5.017e^-4	0.968	INTRON Hs3st-A
2L	3413067	2L_3413067_DEL [dm3] 2L_3413067_DEL [dm6]	TCA	T	5.041e^-4	0.968	INTRON pgant2
2R	19209616	2R_19209616_SNP [dm3] 2R_23322093_SNP [dm6]	T	C	5.047e^-4	0.968	INTRON CG30416
3L	10020626	3L_10020626_SNP [dm3] 3L_10027526_SNP [dm6]	A	C	5.049e^-4	0.968	INTRON dpr6
3L	6669119	3L_6669119_SNP [dm3] 3L_6676019_SNP [dm6]	G	A	5.054e^-4	0.968	INTERGENIC
3R	13824091	3R_13824091_SNP [dm3] 3R_17998369_SNP [dm6]	A	G	5.060e^-4	0.968	INTRON cpo
3L	18941474	3L_18941474_SNP [dm3] 3L_18948374_SNP [dm6]	G	C	5.066e^-4	0.968	INTERGENIC
3R	15108774	3R_15108774_SNP [dm3] 3R_19283052_SNP [dm6]	A	C	5.076e^-4	0.968	INTERGENIC
2R	18498970	2R_18498970_SNP [dm3] 2R_22611465_SNP [dm6]	C	G	5.083e^-4	0.968	SYNONYMOUS_CODING CG4329	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	21552545	3L_21552545_SNP [dm3] 3L_21559445_SNP [dm6]	G	T	5.083e^-4	0.968	INTRON CapaR
3L	11173199	3L_11173199_SNP [dm3] 3L_11180099_SNP [dm6]	T	G	5.089e^-4	0.968	INTRON GlcAT-P
2L	19921170	2L_19921170_SNP [dm3] 2L_19921170_SNP [dm6]	T	A	5.090e^-4	0.968	INTRON sick EXON CR43828
3R	13724775	3R_13724775_SNP [dm3] 3R_17899053_SNP [dm6]	G	A	5.102e^-4	0.968	INTRON Rim
X	8068194	X_8068194_SNP [dm3] X_8174161_SNP [dm6]	T	C	5.104e^-4	0.968	SYNONYMOUS_CODING slpr
3R	27391688	3R_27391688_SNP [dm3] 3R_31565966_SNP [dm6]	T	C	5.110e^-4	0.968	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3L	2663269	3L_2663269_SNP [dm3] 3L_2663269_SNP [dm6]	C	A	5.115e^-4	0.968	SPLICE_SITE_REGION CG33234 SYNONYMOUS_CODING CG33234 INTRON Fife
3R	15659156	3R_15659156_SNP [dm3] 3R_19833434_SNP [dm6]	C	T	5.117e^-4	0.968	INTRON bnl
2L	12892531	2L_12892531_SNP [dm3] 2L_12892531_SNP [dm6]	A	G	5.121e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21372756	X_21372756_INS [dm3] X_21501729_INS [dm6]	A	ATTCAGA	5.124e^-4	0.968	INTRON CR45082
2L	6537990	2L_6537990_SNP [dm3] 2L_6537990_SNP [dm6]	A	G	5.125e^-4	0.968	INTRON eya	TF binding site mE1_TFBS_sens
3R	17759575	3R_17759575_SNP [dm3] 3R_21933853_SNP [dm6]	G	C	5.126e^-4	0.968	INTERGENIC
2L	8037802	2L_8037802_SNP [dm3] 2L_8037802_SNP [dm6]	G	A	5.137e^-4	0.968	SYNONYMOUS_CODING Cka INTRON CG7367	TF binding site mE1_TFBS_sens
X	5327621	X_5327621_SNP [dm3] X_5433588_SNP [dm6]	G	A	5.145e^-4	0.968	EXON CR44471	TF binding site mE1_TFBS_Trl
2R	20380128	2R_20380128_SNP [dm3] 2R_24492605_SNP [dm6]	T	C	5.149e^-4	0.968	SYNONYMOUS_CODING CG13589 DOWNSTREAM CG13590
2L	9998857	2L_9998857_SNP [dm3] 2L_9998857_SNP [dm6]	T	C	5.150e^-4	0.968	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9998883	2L_9998883_SNP [dm3] 2L_9998883_SNP [dm6]	T	G	5.150e^-4	0.968	NON_SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
X	12243303	X_12243303_SNP [dm3] X_12349270_SNP [dm6]	T	G	5.151e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	5.156e^-4	0.968	INTERGENIC
3L	10258875	3L_10258875_SNP [dm3] 3L_10265775_SNP [dm6]	A	T	5.160e^-4	0.968	SYNONYMOUS_CODING can
2R	7501596	2R_7501596_SNP [dm3] 2R_11614091_SNP [dm6]	A	G	5.166e^-4	0.968	INTRON tou	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21053514	3L_21053514_SNP [dm3] 3L_21060414_SNP [dm6]	G	A	5.167e^-4	0.968	INTRON siz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26106401	3R_26106401_SNP [dm3] 3R_30280679_SNP [dm6]	A	G	5.167e^-4	0.968	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24132412	3R_24132412_SNP [dm3] 3R_28306690_SNP [dm6]	C	T	5.170e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15847132	3R_15847132_SNP [dm3] 3R_20021410_SNP [dm6]	T	G	5.177e^-4	0.968	UPSTREAM psidin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	19859390	3R_19859390_SNP [dm3] 3R_24033668_SNP [dm6]	C	T	5.180e^-4	0.968	SYNONYMOUS_CODING Ime4 DOWNSTREAM Miro	TF binding site mE1_TFBS_sens
X	19879629	X_19879629_SNP [dm3] X_19985596_SNP [dm6]	G	A	5.182e^-4	0.968	INTERGENIC
3R	16328239	3R_16328239_SNP [dm3] 3R_20502517_SNP [dm6]	T	C	5.187e^-4	0.968	UPSTREAM Dic2 DOWNSTREAM MtnB INTERGENIC
2R	18499593	2R_18499593_SNP [dm3] 2R_22612088_SNP [dm6]	C	T	5.188e^-4	0.968	SYNONYMOUS_CODING CG4329
2R	14666999	2R_14666999_SNP [dm3] 2R_18779494_SNP [dm6]	A	C	5.190e^-4	0.968	INTERGENIC
2R	12245944	2R_12245944_INS [dm3] 2R_16358439_INS [dm6]	A	AGTGCAAGGACTGCAA...	5.191e^-4	0.968	DOWNSTREAM CR45322 EXON CR43416
3L	10833207	3L_10833207_SNP [dm3] 3L_10840107_SNP [dm6]	G	C	5.199e^-4	0.968	INTERGENIC
2L	7502710	2L_7502710_SNP [dm3] 2L_7502710_SNP [dm6]	A	G	5.209e^-4	0.968	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12156993	2L_12156993_SNP [dm3] 2L_12156993_SNP [dm6]	A	G	5.214e^-4	0.968	INTRON CG31760	transposable element FlyBase
2R	16400509	2R_16400509_SNP [dm3] 2R_20513004_SNP [dm6]	C	T	5.220e^-4	0.968	SPLICE_SITE_REGION CG13426 SYNONYMOUS_CODING CG13426 DOWNSTREAM CR44649
2R	12641671	2R_12641671_SNP [dm3] 2R_16754166_SNP [dm6]	T	A	5.222e^-4	0.968	UPSTREAM CG34189 & 1 other INTRON unc-104
3R	1922216	3R_1922216_SNP [dm3] 3R_6096494_SNP [dm6]	G	T	5.222e^-4	0.968	INTRON Gasp
2L	2337068	2L_2337068_SNP [dm3] 2L_2337068_SNP [dm6]	T	C	5.224e^-4	0.968	INTRON CG9967 & 1 other
2R	12633725	2R_12633725_SNP [dm3] 2R_16746220_SNP [dm6]	C	G	5.226e^-4	0.968	SYNONYMOUS_CODING CG15617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14235758	3L_14235758_SNP [dm3] 3L_14242658_SNP [dm6]	C	A	5.226e^-4	0.968	INTERGENIC
2R	12309942	2R_12309942_SNP [dm3] 2R_16422437_SNP [dm6]	C	T	5.229e^-4	0.968	INTRON Sema-2b
3L	3796474	3L_3796474_SNP [dm3] 3L_3796474_SNP [dm6]	T	A	5.231e^-4	0.968	INTRON CG32264
3R	26292663	3R_26292663_SNP [dm3] 3R_30466941_SNP [dm6]	C	A	5.231e^-4	0.968	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19069219	3R_19069219_SNP [dm3] 3R_23243497_SNP [dm6]	A	T	5.235e^-4	0.968	INTRON CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4114548	3L_4114548_SNP [dm3] 3L_4114548_SNP [dm6]	T	A	5.235e^-4	0.968	UTR_3_PRIME Chd64 DOWNSTREAM Ack
2R	18438674	2R_18438674_SNP [dm3] 2R_22551169_SNP [dm6]	C	A	5.252e^-4	0.968	SYNONYMOUS_CODING CG6018 INTRON px	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21394939	3R_21394939_SNP [dm3] 3R_25569217_SNP [dm6]	G	A	5.263e^-4	0.968	INTRON msi
3R	21049574	3R_21049574_SNP [dm3] 3R_25223852_SNP [dm6]	G	T	5.264e^-4	0.968	UTR_3_PRIME CG11851 DOWNSTREAM Cad96Cb	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6876084	X_6876084_INS [dm3] X_6982051_INS [dm6]	T	TT	5.265e^-4	0.968	UPSTREAM ogre INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13821054	3R_13821054_DEL [dm3] 3R_17995332_DEL [dm6]	ATATGGCCAA	A	5.266e^-4	0.968	INTRON cpo
3R	22727018	3R_22727018_SNP [dm3] 3R_26901296_SNP [dm6]	G	T	5.274e^-4	0.968	INTRON T48	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	24100366	3R_24100366_DEL [dm3] 3R_28274644_DEL [dm6]	ATAA	A	5.278e^-4	0.968	INTERGENIC
2L	5507532	2L_5507532_SNP [dm3] 2L_5507532_SNP [dm6]	T	C	5.281e^-4	0.968	INTERGENIC
3L	11585389	3L_11585389_INS [dm3] 3L_11592289_INS [dm6]	T	TTT	5.284e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3L	11585409	3L_11585409_DEL [dm3] 3L_11592309_DEL [dm6]	TATT	A	5.284e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3L	11585469	3L_11585469_SNP [dm3] 3L_11592369_SNP [dm6]	T	A	5.284e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3L	11585527	3L_11585527_SNP [dm3] 3L_11592427_SNP [dm6]	A	G	5.284e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
3L	11585537	3L_11585537_SNP [dm3] 3L_11592437_SNP [dm6]	G	A	5.284e^-4	0.968	DOWNSTREAM CR45672 & 1 other INTERGENIC
2R	18704663	2R_18704663_SNP [dm3] 2R_22817158_SNP [dm6]	C	T	5.289e^-4	0.968	UPSTREAM CG30271 INTRON CG30271
3R	13453208	3R_13453208_SNP [dm3] 3R_17627486_SNP [dm6]	A	G	5.291e^-4	0.968	INTRON CG14325	TF binding site mE1_TFBS_chinmo
X	4443409	X_4443409_SNP [dm3] X_4549376_SNP [dm6]	G	T	5.295e^-4	0.968	NON_SYNONYMOUS_CODING CG15912 UPSTREAM Usf DOWNSTREAM CG11436 INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	13410634	3R_13410634_SNP [dm3] 3R_17584912_SNP [dm6]	C	A	5.298e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_inv
X	14689487	X_14689487_SNP [dm3] X_14795454_SNP [dm6]	T	C	5.308e^-4	0.968	SYNONYMOUS_CODING rut
2L	14381495	2L_14381495_SNP [dm3] 2L_14381495_SNP [dm6]	G	C	5.308e^-4	0.968	UPSTREAM ppk INTERGENIC
3R	24023646	3R_24023646_SNP [dm3] 3R_28197924_SNP [dm6]	G	A	5.314e^-4	0.968	INTRON CG34354	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26378689	3R_26378689_SNP [dm3] 3R_30552967_SNP [dm6]	T	C	5.317e^-4	0.968	INTRON tmod
2L	12492874	2L_12492874_SNP [dm3] 2L_12492874_SNP [dm6]	T	A	5.320e^-4	0.968	UPSTREAM bun INTRON bun
2L	19907156	2L_19907156_SNP [dm3] 2L_19907156_SNP [dm6]	C	A	5.321e^-4	0.968	INTRON sick

By genomic position
Variant impact
Gene name

pc_Femur_Leg_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results