DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=7.418e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2137 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	10876047	3L_10876047_SNP [dm3] 3L_10882947_SNP [dm6]	A	G	4.988e^-7	0.357	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	5.025e^-7	0.357	INTRON CG3961
3L	10876032	3L_10876032_SNP [dm3] 3L_10882932_SNP [dm6]	T	C	7.569e^-7	0.357	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	6503528	3L_6503528_SNP [dm3] 3L_6510428_SNP [dm6]	G	A	7.622e^-7	0.357	INTRON sfl
3L	10876055	3L_10876055_SNP [dm3] 3L_10882955_SNP [dm6]	A	T	1.154e^-6	0.432	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	1.952e^-6	0.488	INTRON sfl
2L	12126057	2L_12126057_SNP [dm3] 2L_12126057_SNP [dm6]	A	G	2.467e^-6	0.488	SYNONYMOUS_CODING CG17211
3R	10779056	3R_10779056_SNP [dm3] 3R_14953334_SNP [dm6]	A	G	2.888e^-6	0.488	INTERGENIC
3L	6980412	3L_6980412_SNP [dm3] 3L_6987312_SNP [dm6]	G	C	3.178e^-6	0.488	INTERGENIC
2L	11693431	2L_11693431_SNP [dm3] 2L_11693431_SNP [dm6]	C	T	3.329e^-6	0.488	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6980416	3L_6980416_SNP [dm3] 3L_6987316_SNP [dm6]	A	G	3.359e^-6	0.488	INTERGENIC
3L	2661171	3L_2661171_SNP [dm3] 3L_2661171_SNP [dm6]	T	C	4.227e^-6	0.488	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	4.279e^-6	0.488	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	21364521	X_21364521_SNP [dm3] X_21493494_SNP [dm6]	T	G	4.535e^-6	0.488	INTERGENIC	insulator Insulator_Class_II.mE01
2R	11177721	2R_11177721_SNP [dm3] 2R_15290216_SNP [dm6]	C	T	4.692e^-6	0.488	INTRON Trpm
3R	26710952	3R_26710952_SNP [dm3] 3R_30885230_SNP [dm6]	C	T	4.863e^-6	0.488	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26710958	3R_26710958_SNP [dm3] 3R_30885236_SNP [dm6]	T	A	4.863e^-6	0.488	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	6504633	3L_6504633_SNP [dm3] 3L_6511533_SNP [dm6]	T	G	5.031e^-6	0.488	INTRON sfl
2R	11177745	2R_11177745_SNP [dm3] 2R_15290240_SNP [dm6]	G	A	5.319e^-6	0.488	INTRON Trpm
3L	6500516	3L_6500516_SNP [dm3] 3L_6507416_SNP [dm6]	G	A	6.007e^-6	0.488	INTRON sfl
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	6.353e^-6	0.488	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20197953	3R_20197953_SNP [dm3] 3R_24372231_SNP [dm6]	T	A	6.596e^-6	0.488	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20197965	3R_20197965_INS [dm3] 3R_24372243_INS [dm6]	A	ACAG	6.596e^-6	0.488	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5114892	2R_5114892_SNP [dm3] 2R_9227387_SNP [dm6]	T	C	6.904e^-6	0.488	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	6503400	3L_6503400_SNP [dm3] 3L_6510300_SNP [dm6]	G	C	7.111e^-6	0.488	INTRON sfl
2L	2419645	2L_2419645_SNP [dm3] 2L_2419645_SNP [dm6]	T	C	7.342e^-6	0.488	NON_SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20197347	3R_20197347_SNP [dm3] 3R_24371625_SNP [dm6]	C	T	7.484e^-6	0.488	DOWNSTREAM CG13614 INTRON CG17782
X	21364517	X_21364517_SNP [dm3] X_21493490_SNP [dm6]	C	T	7.535e^-6	0.488	INTERGENIC
3L	6498250	3L_6498250_SNP [dm3] 3L_6505150_SNP [dm6]	T	A	7.545e^-6	0.488	INTRON sfl
X	21364491	X_21364491_SNP [dm3] X_21493464_SNP [dm6]	T	C	8.077e^-6	0.505	INTERGENIC
X	14221260	X_14221260_INS [dm3] X_14327227_INS [dm6]	A	AA	8.843e^-6	0.519	INTRON dpr8	TF binding site mE1_TFBS_inv
X	18058545	X_18058545_SNP [dm3] X_18164512_SNP [dm6]	T	A	8.861e^-6	0.519	INTRON Frq1
X	8174534	X_8174534_SNP [dm3] X_8280501_SNP [dm6]	G	A	9.349e^-6	0.531	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	6498271	3L_6498271_SNP [dm3] 3L_6505171_SNP [dm6]	A	C	9.857e^-6	0.543	INTRON sfl
3L	6504635	3L_6504635_SNP [dm3] 3L_6511535_SNP [dm6]	C	G	1.013e^-5	0.543	INTRON sfl
2L	10266562	2L_10266562_SNP [dm3] 2L_10266562_SNP [dm6]	A	G	1.111e^-5	0.578	UTR_3_PRIME Mob3 UPSTREAM CG4953
2L	2419744	2L_2419744_SNP [dm3] 2L_2419744_SNP [dm6]	T	G	1.165e^-5	0.588	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2R	15384925	2R_15384925_SNP [dm3] 2R_19497420_SNP [dm6]	A	T	1.210e^-5	0.588	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6500437	3L_6500437_SNP [dm3] 3L_6507337_SNP [dm6]	T	A	1.260e^-5	0.588	INTRON sfl
2L	14324564	2L_14324564_SNP [dm3] 2L_14324564_SNP [dm6]	A	G	1.290e^-5	0.588	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	1.342e^-5	0.588	INTRON sfl
3L	6498268	3L_6498268_SNP [dm3] 3L_6505168_SNP [dm6]	C	T	1.344e^-5	0.588	INTRON sfl
2L	2419737	2L_2419737_SNP [dm3] 2L_2419737_SNP [dm6]	A	G	1.371e^-5	0.588	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	13668618	2L_13668618_SNP [dm3] 2L_13668618_SNP [dm6]	T	G	1.381e^-5	0.588	INTRON CG18507
3L	6501408	3L_6501408_SNP [dm3] 3L_6508308_SNP [dm6]	G	A	1.433e^-5	0.591	INTRON sfl
2L	7052043	2L_7052043_SNP [dm3] 2L_7052043_SNP [dm6]	G	C	1.452e^-5	0.591	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21364539	X_21364539_SNP [dm3] X_21493512_SNP [dm6]	C	A	1.483e^-5	0.591	INTERGENIC
2R	13435137	2R_13435137_SNP [dm3] 2R_17547632_SNP [dm6]	T	C	1.605e^-5	0.608	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3848162	2L_3848162_SNP [dm3] 2L_3848162_SNP [dm6]	G	T	1.626e^-5	0.608	INTERGENIC
2L	20332857	2L_20332857_DEL [dm3] 2L_20332857_DEL [dm6]	AT	A	1.648e^-5	0.608	INTRON spir	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20197946	3R_20197946_SNP [dm3] 3R_24372224_SNP [dm6]	C	G	1.655e^-5	0.608	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	1.710e^-5	0.614	INTRON CG43444	TF binding site mE1_TFBS_inv
2R	11734186	2R_11734186_SNP [dm3] 2R_15846681_SNP [dm6]	A	C	1.738e^-5	0.614	INTRON tun & 1 other	TF binding site mE1_TFBS_sens
3R	20197379	3R_20197379_SNP [dm3] 3R_24371657_SNP [dm6]	T	C	1.779e^-5	0.614	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG13614
3L	6500407	3L_6500407_SNP [dm3] 3L_6507307_SNP [dm6]	C	G	1.803e^-5	0.614	INTRON sfl
X	21364540	X_21364540_SNP [dm3] X_21493513_SNP [dm6]	C	G	1.871e^-5	0.616	INTERGENIC
X	14217414	X_14217414_SNP [dm3] X_14323381_SNP [dm6]	T	A	1.873e^-5	0.616	INTRON dpr8
3L	6498261	3L_6498261_SNP [dm3] 3L_6505161_SNP [dm6]	G	A	1.979e^-5	0.63	INTRON sfl
3L	4176652	3L_4176652_SNP [dm3] 3L_4176652_SNP [dm6]	C	T	1.983e^-5	0.63	SYNONYMOUS_CODING Teh4 INTRON CG18675
3L	12158530	3L_12158530_SNP [dm3] 3L_12165430_SNP [dm6]	C	T	2.018e^-5	0.63	UTR_3_PRIME Rh7
3L	6498227	3L_6498227_SNP [dm3] 3L_6505127_SNP [dm6]	G	T	2.076e^-5	0.638	SPLICE_SITE_REGION sfl INTRON sfl	TF binding site BDTNP1_TFBS_dl
3R	20198321	3R_20198321_SNP [dm3] 3R_24372599_SNP [dm6]	G	A	2.173e^-5	0.647	SYNONYMOUS_CODING CG17782 DOWNSTREAM CG17781	TF binding site mE1_TFBS_chinmo
X	21364533	X_21364533_SNP [dm3] X_21493506_SNP [dm6]	T	A	2.175e^-5	0.647	INTERGENIC
3L	6504236	3L_6504236_SNP [dm3] 3L_6511136_SNP [dm6]	G	C	2.208e^-5	0.647	INTRON sfl
3L	6501883	3L_6501883_SNP [dm3] 3L_6508783_SNP [dm6]	G	A	2.334e^-5	0.663	INTRON sfl
X	20900429	X_20900429_SNP [dm3] X_21029402_SNP [dm6]	G	T	2.365e^-5	0.663	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2R	11851353	2R_11851353_SNP [dm3] 2R_15963848_SNP [dm6]	T	G	2.395e^-5	0.663	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8652025	2L_8652025_SNP [dm3] 2L_8652025_SNP [dm6]	G	A	2.407e^-5	0.663	INTRON Sema-1a
2L	10266745	2L_10266745_SNP [dm3] 2L_10266745_SNP [dm6]	T	C	2.506e^-5	0.671	UTR_5_PRIME CG4953 DOWNSTREAM Mob3
3L	2765403	3L_2765403_SNP [dm3] 3L_2765403_SNP [dm6]	T	A	2.527e^-5	0.671	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3857674	X_3857674_SNP [dm3] X_3963641_SNP [dm6]	A	G	2.575e^-5	0.671	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10831679	3L_10831679_SNP [dm3] 3L_10838579_SNP [dm6]	A	C	2.627e^-5	0.671	INTERGENIC	enhancer mE1_CBP_Enhancers
X	3786092	X_3786092_INS [dm3] X_3892059_INS [dm6]	G	GG	2.632e^-5	0.671	UTR_3_PRIME CG42541 DOWNSTREAM CG42541
3R	26710819	3R_26710819_SNP [dm3] 3R_30885097_SNP [dm6]	C	T	2.669e^-5	0.671	NON_SYNONYMOUS_CODING Sap-r	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3848183	2L_3848183_SNP [dm3] 2L_3848183_SNP [dm6]	A	G	2.723e^-5	0.671	INTERGENIC
2L	2419719	2L_2419719_SNP [dm3] 2L_2419719_SNP [dm6]	G	A	2.790e^-5	0.671	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18934688	X_18934688_SNP [dm3] X_19040655_SNP [dm6]	A	G	2.798e^-5	0.671	INTERGENIC
3L	6721023	3L_6721023_SNP [dm3] 3L_6727923_SNP [dm6]	G	A	2.823e^-5	0.671	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7591054	2L_7591054_INS [dm3] 2L_7591054_INS [dm6]	A	AA	2.828e^-5	0.671	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	2.928e^-5	0.684	INTERGENIC
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	2.957e^-5	0.684	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	9204539	3L_9204539_SNP [dm3] 3L_9211439_SNP [dm6]	G	T	3.353e^-5	0.711	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	14143505	2R_14143505_SNP [dm3] 2R_18256000_SNP [dm6]	G	A	3.382e^-5	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	4130028	3L_4130028_SNP [dm3] 3L_4130028_SNP [dm6]	C	T	3.404e^-5	0.711	INTRON ens
3L	11442496	3L_11442496_SNP [dm3] 3L_11449396_SNP [dm6]	G	T	3.441e^-5	0.711	INTERGENIC
2L	10266205	2L_10266205_SNP [dm3] 2L_10266205_SNP [dm6]	A	T	3.454e^-5	0.711	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953 DOWNSTREAM CG18619
3L	6503375	3L_6503375_SNP [dm3] 3L_6510275_SNP [dm6]	G	T	3.459e^-5	0.711	INTRON sfl
2L	10268881	2L_10268881_SNP [dm3] 2L_10268881_SNP [dm6]	T	A	3.487e^-5	0.711	UTR_5_PRIME CG4957 DOWNSTREAM CG4953	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_ttk
3R	13851036	3R_13851036_SNP [dm3] 3R_18025314_SNP [dm6]	C	G	3.553e^-5	0.711	UTR_3_PRIME CG7794
2L	3848185	2L_3848185_SNP [dm3] 2L_3848185_SNP [dm6]	C	T	3.638e^-5	0.711	INTERGENIC
3L	6953355	3L_6953355_SNP [dm3] 3L_6960255_SNP [dm6]	G	A	3.682e^-5	0.711	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo
2R	19193144	2R_19193144_SNP [dm3] 2R_23305621_SNP [dm6]	C	T	3.698e^-5	0.711	INTERGENIC
2L	2684362	2L_2684362_SNP [dm3] 2L_2684362_SNP [dm6]	A	T	3.699e^-5	0.711	INTRON CG31690
X	5527310	X_5527310_SNP [dm3] X_5633277_SNP [dm6]	G	T	3.700e^-5	0.711	INTRON CG42492
3L	4130022	3L_4130022_SNP [dm3] 3L_4130022_SNP [dm6]	T	A	3.704e^-5	0.711	INTRON ens
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	3.710e^-5	0.711	UPSTREAM Indy INTERGENIC
2L	2419753	2L_2419753_SNP [dm3] 2L_2419753_SNP [dm6]	A	G	3.723e^-5	0.711	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	2419699	2L_2419699_SNP [dm3] 2L_2419699_SNP [dm6]	G	A	3.761e^-5	0.711	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18509764	2L_18509764_SNP [dm3] 2L_18509764_SNP [dm6]	A	G	3.775e^-5	0.711	UTR_5_PRIME CG10178 INTRON CG10178
X	6866265	X_6866265_SNP [dm3] X_6972232_SNP [dm6]	A	C	3.825e^-5	0.711	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
3L	6512184	3L_6512184_DEL [dm3] 3L_6519084_DEL [dm6]	AA	A	3.830e^-5	0.711	INTRON sfl
X	289422	X_289422_SNP [dm3] X_395389_SNP [dm6]	A	T	4.065e^-5	0.745	UPSTREAM sc INTRON CG32816	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	570536	3R_570536_SNP [dm3] 3R_4744814_SNP [dm6]	T	A	4.154e^-5	0.745	INTRON tacc
X	3857687	X_3857687_SNP [dm3] X_3963654_SNP [dm6]	G	T	4.265e^-5	0.745	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4579796	3L_4579796_SNP [dm3] 3L_4579796_SNP [dm6]	T	C	4.302e^-5	0.745	INTRON CG42540
2L	2666963	2L_2666963_SNP [dm3] 2L_2666963_SNP [dm6]	T	C	4.452e^-5	0.745	DOWNSTREAM CG9879 INTERGENIC
3R	19073296	3R_19073296_SNP [dm3] 3R_23247574_SNP [dm6]	C	G	4.467e^-5	0.745	INTRON CG4467
3R	9565314	3R_9565314_SNP [dm3] 3R_13739592_SNP [dm6]	G	A	4.530e^-5	0.745	INTRON CG34383	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11856586	X_11856586_SNP [dm3] X_11962553_SNP [dm6]	C	T	4.532e^-5	0.745	SYNONYMOUS_CODING cac
2L	15927119	2L_15927119_SNP [dm3] 2L_15927119_SNP [dm6]	G	A	4.547e^-5	0.745	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	15927152	2L_15927152_SNP [dm3] 2L_15927152_SNP [dm6]	G	C	4.547e^-5	0.745	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	10876224	3L_10876224_SNP [dm3] 3L_10883124_SNP [dm6]	T	C	4.559e^-5	0.745	UPSTREAM CG6409 INTRON CG7949	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16782164	3R_16782164_SNP [dm3] 3R_20956442_SNP [dm6]	T	G	4.583e^-5	0.745	INTRON Atpalpha
2L	14360027	2L_14360027_SNP [dm3] 2L_14360027_SNP [dm6]	A	G	4.626e^-5	0.745	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2004736	2L_2004736_SNP [dm3] 2L_2004736_SNP [dm6]	C	T	4.648e^-5	0.745	DOWNSTREAM CR43464 INTRON CG33543
X	19592861	X_19592861_SNP [dm3] X_19698828_SNP [dm6]	C	T	4.659e^-5	0.745	UTR_3_PRIME Cdc42 DOWNSTREAM CG14231	TF binding site BDTNP1_TFBS_dl
2R	13435049	2R_13435049_SNP [dm3] 2R_17547544_SNP [dm6]	G	T	4.771e^-5	0.745	UPSTREAM MESR4 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	19727517	2R_19727517_SNP [dm3] 2R_23839994_SNP [dm6]	T	C	4.799e^-5	0.745	UPSTREAM CR44805 DOWNSTREAM CG5549 EXON snoRNA:Psi18S-176	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18058380	X_18058380_SNP [dm3] X_18164347_SNP [dm6]	A	G	4.919e^-5	0.745	INTRON Frq1
3L	6496954	3L_6496954_SNP [dm3] 3L_6503854_SNP [dm6]	C	T	4.945e^-5	0.745	INTRON sfl	TF binding site BDTNP1_TFBS_dl
2L	2419523	2L_2419523_SNP [dm3] 2L_2419523_SNP [dm6]	G	T	4.954e^-5	0.745	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18878322	3L_18878322_SNP [dm3] 3L_18885222_SNP [dm6]	C	T	4.969e^-5	0.745	UPSTREAM CG3961 INTRON CG3961
2L	10266122	2L_10266122_SNP [dm3] 2L_10266122_SNP [dm6]	T	C	5.008e^-5	0.745	UPSTREAM CG4953 DOWNSTREAM CG18619 INTRON Mob3	TF binding site BDTNP1_TFBS_dl
2L	2419710	2L_2419710_DEL [dm3] 2L_2419710_DEL [dm6]	TG	A	5.009e^-5	0.745	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14217097	X_14217097_SNP [dm3] X_14323064_SNP [dm6]	C	T	5.013e^-5	0.745	INTRON dpr8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5259895	2L_5259895_SNP [dm3] 2L_5259895_SNP [dm6]	A	G	5.040e^-5	0.745	INTRON tkv EXON CR44744
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	5.053e^-5	0.745	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6497892	3L_6497892_SNP [dm3] 3L_6504792_SNP [dm6]	C	T	5.086e^-5	0.745	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14666183	2R_14666183_SNP [dm3] 2R_18778678_SNP [dm6]	A	G	5.244e^-5	0.76	INTERGENIC
3R	22525439	3R_22525439_SNP [dm3] 3R_26699717_SNP [dm6]	T	G	5.275e^-5	0.76	SPLICE_SITE_REGION amon SYNONYMOUS_CODING amon
3L	3013143	3L_3013143_INS [dm3] 3L_3013143_INS [dm6]	A	AA	5.398e^-5	0.772	INTERGENIC
X	18370864	X_18370864_SNP [dm3] X_18476831_SNP [dm6]	G	T	5.446e^-5	0.772	INTRON CG32547
2L	7937252	2L_7937252_SNP [dm3] 2L_7937252_SNP [dm6]	A	T	5.488e^-5	0.772	INTRON Snoo
2L	15927099	2L_15927099_SNP [dm3] 2L_15927099_SNP [dm6]	G	A	5.529e^-5	0.772	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site mE1_TFBS_HSA
X	15191399	X_15191399_SNP [dm3] X_15297366_SNP [dm6]	G	A	5.563e^-5	0.772	UPSTREAM gce DOWNSTREAM CG5877 EXON CR44429	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3796347	3L_3796347_SNP [dm3] 3L_3796347_SNP [dm6]	A	T	5.683e^-5	0.778	INTRON CG32264
3L	6711627	3L_6711627_SNP [dm3] 3L_6718527_SNP [dm6]	C	A	5.701e^-5	0.778	INTRON ple
2R	14665643	2R_14665643_MNP [dm3] 2R_18778138_MNP [dm6]	TTG	CCT	5.815e^-5	0.778	DOWNSTREAM CR43964 INTERGENIC
2L	9567664	2L_9567664_SNP [dm3] 2L_9567664_SNP [dm6]	C	A	5.819e^-5	0.778	UPSTREAM jp DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	19104996	2R_19104996_SNP [dm3] 2R_23217473_SNP [dm6]	A	G	5.840e^-5	0.778	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7999300	3L_7999300_SNP [dm3] 3L_8006200_SNP [dm6]	T	A	5.881e^-5	0.778	INTRON nmo
X	6866290	X_6866290_SNP [dm3] X_6972257_SNP [dm6]	G	A	5.895e^-5	0.778	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
3L	10831678	3L_10831678_SNP [dm3] 3L_10838578_SNP [dm6]	C	A	5.938e^-5	0.778	INTERGENIC	enhancer mE1_CBP_Enhancers
2R	18241614	2R_18241614_SNP [dm3] 2R_22354109_SNP [dm6]	C	T	5.981e^-5	0.778	INTRON Liprin-gamma
2L	8652040	2L_8652040_SNP [dm3] 2L_8652040_SNP [dm6]	A	C	6.127e^-5	0.791	INTRON Sema-1a
3L	4130019	3L_4130019_SNP [dm3] 3L_4130019_SNP [dm6]	T	C	6.237e^-5	0.791	INTRON ens
2R	5137976	2R_5137976_SNP [dm3] 2R_9250471_SNP [dm6]	T	C	6.290e^-5	0.791	INTERGENIC
3L	6954072	3L_6954072_SNP [dm3] 3L_6960972_SNP [dm6]	A	G	6.332e^-5	0.791	SYNONYMOUS_CODING sgl	TF binding site mE1_TFBS_chinmo
X	3539108	X_3539108_SNP [dm3] X_3645075_SNP [dm6]	C	T	6.403e^-5	0.791	INTRON AstA-R1
3L	4129421	3L_4129421_SNP [dm3] 3L_4129421_SNP [dm6]	A	G	6.462e^-5	0.791	INTRON ens
3L	10836577	3L_10836577_DEL [dm3] 3L_10843477_DEL [dm6]	TTGTC	AGA	6.518e^-5	0.791	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20514598	2L_20514598_SNP [dm3] 2L_20514598_SNP [dm6]	T	G	6.548e^-5	0.791	DOWNSTREAM CR45702 INTERGENIC
X	16445440	X_16445440_SNP [dm3] X_16551407_SNP [dm6]	G	T	6.608e^-5	0.791	INTRON Arp2
2L	3848164	2L_3848164_SNP [dm3] 2L_3848164_SNP [dm6]	A	G	6.688e^-5	0.791	INTERGENIC
2L	3848177	2L_3848177_SNP [dm3] 2L_3848177_SNP [dm6]	G	A	6.688e^-5	0.791	INTERGENIC
2L	2666981	2L_2666981_SNP [dm3] 2L_2666981_SNP [dm6]	A	G	6.744e^-5	0.791	DOWNSTREAM CG9879 INTERGENIC
2L	8493138	2L_8493138_SNP [dm3] 2L_8493138_SNP [dm6]	C	T	6.766e^-5	0.791	INTRON Dh31
3L	10833851	3L_10833851_SNP [dm3] 3L_10840751_SNP [dm6]	G	A	6.805e^-5	0.791	INTERGENIC
3L	8661273	3L_8661273_SNP [dm3] 3L_8668173_SNP [dm6]	C	T	6.817e^-5	0.791	INTERGENIC	TF binding site mE1_TFBS_cad
X	14218285	X_14218285_SNP [dm3] X_14324252_SNP [dm6]	G	A	6.886e^-5	0.791	INTRON dpr8
2L	15927109	2L_15927109_SNP [dm3] 2L_15927109_SNP [dm6]	G	A	6.926e^-5	0.791	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	6499976	3L_6499976_SNP [dm3] 3L_6506876_SNP [dm6]	C	T	6.962e^-5	0.791	INTRON sfl
3R	776330	3R_776330_SNP [dm3] 3R_4950608_SNP [dm6]	G	A	7.053e^-5	0.791	SYNONYMOUS_CODING UbcD6
3L	4176822	3L_4176822_SNP [dm3] 3L_4176822_SNP [dm6]	C	T	7.056e^-5	0.791	INTRON CG18675 & 1 other
3L	4176830	3L_4176830_SNP [dm3] 3L_4176830_SNP [dm6]	G	C	7.056e^-5	0.791	INTRON CG18675 & 1 other
X	18370916	X_18370916_SNP [dm3] X_18476883_SNP [dm6]	C	T	7.119e^-5	0.791	INTRON CG32547
3L	20708407	3L_20708407_SNP [dm3] 3L_20715307_SNP [dm6]	T	A	7.148e^-5	0.791	DOWNSTREAM CG34260 INTRON cmpy	TF binding site BDTNP1_TFBS_twi
3R	20198525	3R_20198525_SNP [dm3] 3R_24372803_SNP [dm6]	C	G	7.166e^-5	0.791	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4797297	X_4797297_SNP [dm3] X_4903264_SNP [dm6]	C	T	7.202e^-5	0.791	INTRON CG42594
2R	11887474	2R_11887474_SNP [dm3] 2R_15999969_SNP [dm6]	A	G	7.473e^-5	0.791	SPLICE_SITE_REGION ATPCL UTR_5_PRIME ATPCL
3L	4130031	3L_4130031_SNP [dm3] 3L_4130031_SNP [dm6]	T	C	7.512e^-5	0.791	INTRON ens
X	21457457	X_21457457_SNP [dm3] X_21586430_SNP [dm6]	C	A	7.543e^-5	0.791	INTERGENIC
2L	7590927	2L_7590927_SNP [dm3] 2L_7590927_SNP [dm6]	G	T	7.598e^-5	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3L	10765838	3L_10765838_SNP [dm3] 3L_10772738_SNP [dm6]	C	G	7.619e^-5	0.791	INTRON CG43245
2L	8693045	2L_8693045_SNP [dm3] 2L_8693045_SNP [dm6]	A	C	7.619e^-5	0.791	UPSTREAM Hnf4 INTRON Hnf4	TF binding site mE1_TFBS_cnc
2L	20514600	2L_20514600_SNP [dm3] 2L_20514600_SNP [dm6]	G	T	7.627e^-5	0.791	DOWNSTREAM CR45702 INTERGENIC
2L	12848939	2L_12848939_SNP [dm3] 2L_12848939_SNP [dm6]	T	C	7.643e^-5	0.791	INTERGENIC
3L	11861733	3L_11861733_SNP [dm3] 3L_11868633_SNP [dm6]	G	A	7.692e^-5	0.791	INTRON CG44837
2R	17964919	2R_17964919_SNP [dm3] 2R_22077414_SNP [dm6]	G	T	7.699e^-5	0.791	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	7.782e^-5	0.791	UPSTREAM CG33998 INTRON Hs3st-A
3L	10765835	3L_10765835_SNP [dm3] 3L_10772735_SNP [dm6]	A	C	7.815e^-5	0.791	INTRON CG43245
2R	13401119	2R_13401119_SNP [dm3] 2R_17513614_SNP [dm6]	T	C	7.915e^-5	0.791	SYNONYMOUS_CODING CG4847 UPSTREAM CG4853	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10765839	3L_10765839_SNP [dm3] 3L_10772739_SNP [dm6]	T	A	7.938e^-5	0.791	INTRON CG43245
X	8901200	X_8901200_SNP [dm3] X_9007167_SNP [dm6]	A	C	7.944e^-5	0.791	INTRON rdgA & 1 other
2L	15111666	2L_15111666_SNP [dm3] 2L_15111666_SNP [dm6]	C	G	7.965e^-5	0.791	INTRON CG15269	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	3693459	2L_3693459_SNP [dm3] 2L_3693459_SNP [dm6]	T	G	7.995e^-5	0.791	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 2 others
2L	10351280	2L_10351280_SNP [dm3] 2L_10351280_SNP [dm6]	T	C	8.080e^-5	0.791	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14665656	2R_14665656_SNP [dm3] 2R_18778151_SNP [dm6]	A	T	8.117e^-5	0.791	DOWNSTREAM CR43964 INTERGENIC
X	6866242	X_6866242_SNP [dm3] X_6972209_SNP [dm6]	T	G	8.134e^-5	0.791	UTR_3_PRIME CG4586 DOWNSTREAM CG3040	TF binding site mE1_TFBS_cad
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	8.179e^-5	0.791	UPSTREAM CG43366 INTERGENIC
2L	784616	2L_784616_SNP [dm3] 2L_784616_SNP [dm6]	C	T	8.200e^-5	0.791	SYNONYMOUS_CODING CG3544
X	19594352	X_19594352_SNP [dm3] X_19700319_SNP [dm6]	C	G	8.227e^-5	0.791	UTR_3_PRIME CG14231 DOWNSTREAM Cdc42	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19594450	X_19594450_SNP [dm3] X_19700417_SNP [dm6]	T	C	8.227e^-5	0.791	UTR_3_PRIME CG14231 DOWNSTREAM Cdc42	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16782183	3R_16782183_SNP [dm3] 3R_20956461_SNP [dm6]	T	C	8.250e^-5	0.791	INTRON Atpalpha
2R	11878391	2R_11878391_SNP [dm3] 2R_15990886_SNP [dm6]	C	G	8.309e^-5	0.791	SYNONYMOUS_CODING CG8314 DOWNSTREAM Pex11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10831681	3L_10831681_SNP [dm3] 3L_10838581_SNP [dm6]	T	C	8.311e^-5	0.791	INTERGENIC	enhancer mE1_CBP_Enhancers
3L	2492192	3L_2492192_SNP [dm3] 3L_2492192_SNP [dm6]	G	A	8.358e^-5	0.791	UTR_3_PRIME CG1146 INTRON CG45186
2R	9466040	2R_9466040_SNP [dm3] 2R_13578535_SNP [dm6]	T	C	8.406e^-5	0.791	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6504642	3L_6504642_SNP [dm3] 3L_6511542_SNP [dm6]	G	C	8.441e^-5	0.791	INTRON sfl
X	5258292	X_5258292_DEL [dm3] X_5364259_DEL [dm6]	GAGAGAG	G	8.447e^-5	0.791	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18058384	X_18058384_SNP [dm3] X_18164351_SNP [dm6]	A	T	8.559e^-5	0.794	INTRON Frq1
3L	10765831	3L_10765831_SNP [dm3] 3L_10772731_SNP [dm6]	A	T	8.613e^-5	0.794	INTRON CG43245	TF binding site mE1_TFBS_cad
3L	2578163	3L_2578163_SNP [dm3] 3L_2578163_SNP [dm6]	G	A	8.736e^-5	0.794	INTRON msn
2L	7591095	2L_7591095_INS [dm3] 2L_7591095_INS [dm6]	T	TAT	8.767e^-5	0.794	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	5813101	2L_5813101_SNP [dm3] 2L_5813101_SNP [dm6]	C	G	8.776e^-5	0.794	INTERGENIC
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	8.838e^-5	0.794	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	18591051	3R_18591051_SNP [dm3] 3R_22765329_SNP [dm6]	A	G	8.850e^-5	0.794	SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12189623	2L_12189623_SNP [dm3] 2L_12189623_SNP [dm6]	G	T	8.875e^-5	0.794	INTRON aret
X	18372469	X_18372469_SNP [dm3] X_18478436_SNP [dm6]	G	A	8.890e^-5	0.794	INTRON CG32547
2R	10863807	2R_10863807_SNP [dm3] 2R_14976302_SNP [dm6]	A	G	8.940e^-5	0.794	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12060408	2R_12060408_SNP [dm3] 2R_16172903_SNP [dm6]	G	A	8.987e^-5	0.794	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
2R	17410502	2R_17410502_SNP [dm3] 2R_21522997_SNP [dm6]	G	T	8.990e^-5	0.794	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	19073290	3R_19073290_SNP [dm3] 3R_23247568_SNP [dm6]	A	T	9.029e^-5	0.794	INTRON CG4467
2L	13668638	2L_13668638_SNP [dm3] 2L_13668638_SNP [dm6]	T	G	9.214e^-5	0.805	INTRON CG18507
2L	13668610	2L_13668610_DEL [dm3] 2L_13668610_DEL [dm6]	AATATA	G	9.316e^-5	0.805	INTRON CG18507
2L	13668617	2L_13668617_SNP [dm3] 2L_13668617_SNP [dm6]	A	G	9.316e^-5	0.805	INTRON CG18507
X	6736048	X_6736048_SNP [dm3] X_6842015_SNP [dm6]	T	A	9.319e^-5	0.805	INTRON CG14435
2L	15926890	2L_15926890_DEL [dm3] 2L_15926890_DEL [dm6]	GGAGTGTGTGTATGTACTG...	G	9.615e^-5	0.806	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3L	10831685	3L_10831685_SNP [dm3] 3L_10838585_SNP [dm6]	T	A	9.626e^-5	0.806	INTERGENIC	enhancer mE1_CBP_Enhancers
2L	9485730	2L_9485730_SNP [dm3] 2L_9485730_SNP [dm6]	T	G	9.960e^-5	0.806	INTERGENIC
3L	5373106	3L_5373106_SNP [dm3] 3L_5380006_SNP [dm6]	T	G	9.980e^-5	0.806	SYNONYMOUS_CODING Ir64a
3L	10765830	3L_10765830_SNP [dm3] 3L_10772730_SNP [dm6]	C	A	9.983e^-5	0.806	INTRON CG43245	TF binding site mE1_TFBS_cad
2L	5249175	2L_5249175_SNP [dm3] 2L_5249175_SNP [dm6]	A	T	9.991e^-5	0.806	INTRON tkv	TF binding site mE1_TFBS_cnc
X	4478018	X_4478018_SNP [dm3] X_4583985_SNP [dm6]	A	G	1.002e^-4	0.806	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9466017	2R_9466017_INS [dm3] 2R_13578512_INS [dm6]	T	TATTGA	1.009e^-4	0.806	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3857659	X_3857659_SNP [dm3] X_3963626_SNP [dm6]	C	T	1.013e^-4	0.806	NON_SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15927138	2L_15927138_SNP [dm3] 2L_15927138_SNP [dm6]	T	G	1.015e^-4	0.806	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	14532479	3R_14532479_SNP [dm3] 3R_18706757_SNP [dm6]	T	G	1.026e^-4	0.806	INTRON VAChT & 1 other
2R	18561471	2R_18561471_INS [dm3] 2R_22673966_INS [dm6]	T	TTATTTCTTGGCAATTGTTT...	1.031e^-4	0.806	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
3L	6501289	3L_6501289_SNP [dm3] 3L_6508189_SNP [dm6]	G	A	1.034e^-4	0.806	INTRON sfl
2L	10523573	2L_10523573_SNP [dm3] 2L_10523573_SNP [dm6]	T	G	1.041e^-4	0.806	INTERGENIC
X	11280678	X_11280678_SNP [dm3] X_11386645_SNP [dm6]	T	A	1.050e^-4	0.806	INTRON dlg1
2L	3848178	2L_3848178_SNP [dm3] 2L_3848178_SNP [dm6]	C	T	1.051e^-4	0.806	INTERGENIC
3L	2661345	3L_2661345_SNP [dm3] 3L_2661345_SNP [dm6]	A	C	1.053e^-4	0.806	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
3L	12123283	3L_12123283_SNP [dm3] 3L_12130183_SNP [dm6]	C	T	1.055e^-4	0.806	SYNONYMOUS_CODING Lsp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5884477	X_5884477_SNP [dm3] X_5990444_SNP [dm6]	C	T	1.056e^-4	0.806	UTR_5_PRIME CG5966 INTRON CG5966
X	15191324	X_15191324_SNP [dm3] X_15297291_SNP [dm6]	T	C	1.056e^-4	0.806	UPSTREAM gce DOWNSTREAM CR44429 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2848271	2L_2848271_SNP [dm3] 2L_2848271_SNP [dm6]	A	G	1.057e^-4	0.806	NON_SYNONYMOUS_CODING CG2983 DOWNSTREAM CG3104
X	16231985	X_16231985_SNP [dm3] X_16337952_SNP [dm6]	T	A	1.061e^-4	0.806	UTR_3_PRIME Dsp1	TF binding site mE1_TFBS_cad
X	6736202	X_6736202_DEL [dm3] X_6842169_DEL [dm6]	GGGATCTTTAAAG...	G	1.061e^-4	0.806	INTRON CG14435
X	6736087	X_6736087_SNP [dm3] X_6842054_SNP [dm6]	A	T	1.065e^-4	0.806	INTRON CG14435
X	6736090	X_6736090_SNP [dm3] X_6842057_SNP [dm6]	A	C	1.065e^-4	0.806	INTRON CG14435
X	6736099	X_6736099_INS [dm3] X_6842066_INS [dm6]	C	CATCTA	1.065e^-4	0.806	INTRON CG14435
X	6736106	X_6736106_SNP [dm3] X_6842073_SNP [dm6]	C	A	1.065e^-4	0.806	INTRON CG14435
X	6736148	X_6736148_SNP [dm3] X_6842115_SNP [dm6]	C	T	1.065e^-4	0.806	INTRON CG14435
3L	12201318	3L_12201318_SNP [dm3] 3L_12208218_SNP [dm6]	T	A	1.066e^-4	0.806	DOWNSTREAM app INTRON app
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	1.071e^-4	0.806	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	13040497	2R_13040497_SNP [dm3] 2R_17152992_SNP [dm6]	G	T	1.074e^-4	0.806	INTERGENIC
2R	9466034	2R_9466034_SNP [dm3] 2R_13578529_SNP [dm6]	A	G	1.076e^-4	0.806	DOWNSTREAM CR44365 EXON CR44366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6511514	3L_6511514_SNP [dm3] 3L_6518414_SNP [dm6]	G	T	1.078e^-4	0.806	INTRON sfl
3L	9204540	3L_9204540_SNP [dm3] 3L_9211440_SNP [dm6]	T	G	1.080e^-4	0.806	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	13668656	2L_13668656_SNP [dm3] 2L_13668656_SNP [dm6]	A	T	1.085e^-4	0.807	INTRON CG18507
X	18058379	X_18058379_SNP [dm3] X_18164346_SNP [dm6]	G	A	1.089e^-4	0.807	INTRON Frq1
3L	18870055	3L_18870055_SNP [dm3] 3L_18876955_SNP [dm6]	T	C	1.096e^-4	0.808	SYNONYMOUS_CODING Ugt
3R	26076188	3R_26076188_SNP [dm3] 3R_30250466_SNP [dm6]	G	A	1.099e^-4	0.808	NON_SYNONYMOUS_CODING CG34299 UPSTREAM CG9682 DOWNSTREAM CG34299
3L	6499536	3L_6499536_SNP [dm3] 3L_6506436_SNP [dm6]	G	A	1.110e^-4	0.808	INTRON sfl
2L	18613833	2L_18613833_SNP [dm3] 2L_18613833_SNP [dm6]	T	C	1.115e^-4	0.808	DOWNSTREAM CG15161 INTERGENIC
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	1.117e^-4	0.808	INTERGENIC
2L	1717804	2L_1717804_SNP [dm3] 2L_1717804_SNP [dm6]	T	C	1.117e^-4	0.808	SYNONYMOUS_CODING Rim2
X	18937762	X_18937762_SNP [dm3] X_19043729_SNP [dm6]	G	T	1.129e^-4	0.809	INTERGENIC
2R	1813473	2R_1813473_SNP [dm3] 2R_5925968_SNP [dm6]	T	G	1.132e^-4	0.809	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	21594431	3L_21594431_SNP [dm3] 3L_21601331_SNP [dm6]	T	C	1.133e^-4	0.809	INTRON TfAP-2
X	5617923	X_5617923_SNP [dm3] X_5723890_SNP [dm6]	G	A	1.135e^-4	0.809	UPSTREAM CG32758 INTRON CG32758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5709225	X_5709225_SNP [dm3] X_5815192_SNP [dm6]	A	C	1.140e^-4	0.809	NON_SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
3R	20197350	3R_20197350_SNP [dm3] 3R_24371628_SNP [dm6]	A	T	1.144e^-4	0.809	DOWNSTREAM CG13614 INTRON CG17782
3R	23469776	3R_23469776_SNP [dm3] 3R_27644054_SNP [dm6]	G	T	1.154e^-4	0.813	INTRON tau
2R	14666191	2R_14666191_DEL [dm3] 2R_18778686_DEL [dm6]	TCACCGTTCT	T	1.168e^-4	0.82	INTERGENIC
X	6736143	X_6736143_SNP [dm3] X_6842110_SNP [dm6]	T	C	1.174e^-4	0.821	INTRON CG14435
3L	2578155	3L_2578155_SNP [dm3] 3L_2578155_SNP [dm6]	C	A	1.181e^-4	0.822	INTRON msn
2R	10979968	2R_10979968_SNP [dm3] 2R_15092463_SNP [dm6]	G	A	1.185e^-4	0.822	DOWNSTREAM CR44457 INTERGENIC
3R	3413865	3R_3413865_SNP [dm3] 3R_7588143_SNP [dm6]	G	A	1.200e^-4	0.822	INTRON CG34127
3R	11553907	3R_11553907_SNP [dm3] 3R_15728185_SNP [dm6]	A	G	1.200e^-4	0.822	INTERGENIC
2L	7591045	2L_7591045_SNP [dm3] 2L_7591045_SNP [dm6]	G	C	1.201e^-4	0.822	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
2R	5105862	2R_5105862_SNP [dm3] 2R_9218357_SNP [dm6]	T	G	1.202e^-4	0.822	INTERGENIC
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	1.212e^-4	0.824	INTERGENIC
X	6736105	X_6736105_SNP [dm3] X_6842072_SNP [dm6]	T	G	1.217e^-4	0.824	INTRON CG14435
X	6736093	X_6736093_INS [dm3] X_6842060_INS [dm6]	G	CA	1.219e^-4	0.824	INTRON CG14435
2L	10805068	2L_10805068_SNP [dm3] 2L_10805068_SNP [dm6]	A	C	1.222e^-4	0.824	INTRON Nos
3R	22153546	3R_22153546_DEL [dm3] 3R_26327824_DEL [dm6]	CC	C	1.227e^-4	0.824	INTRON CG33970
3R	9565203	3R_9565203_SNP [dm3] 3R_13739481_SNP [dm6]	A	C	1.240e^-4	0.83	INTRON CG34383	TF binding site mE1_TFBS_Trl
3L	11336512	3L_11336512_SNP [dm3] 3L_11343412_SNP [dm6]	G	C	1.245e^-4	0.83	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	18362002	3L_18362002_SNP [dm3] 3L_18368902_SNP [dm6]	A	G	1.255e^-4	0.83	INTERGENIC
X	6736060	X_6736060_SNP [dm3] X_6842027_SNP [dm6]	C	T	1.256e^-4	0.83	INTRON CG14435
2R	15828864	2R_15828864_SNP [dm3] 2R_19941359_SNP [dm6]	G	A	1.259e^-4	0.83	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20499214	3R_20499214_SNP [dm3] 3R_24673492_SNP [dm6]	C	G	1.264e^-4	0.83	INTRON slo
3L	6953421	3L_6953421_SNP [dm3] 3L_6960321_SNP [dm6]	T	C	1.268e^-4	0.83	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo
3R	21468813	3R_21468813_SNP [dm3] 3R_25643091_SNP [dm6]	C	T	1.281e^-4	0.83	INTRON jigr1
X	11856595	X_11856595_SNP [dm3] X_11962562_SNP [dm6]	G	T	1.288e^-4	0.83	SYNONYMOUS_CODING cac
X	18935081	X_18935081_SNP [dm3] X_19041048_SNP [dm6]	T	C	1.291e^-4	0.83	INTERGENIC
2L	2419426	2L_2419426_SNP [dm3] 2L_2419426_SNP [dm6]	G	A	1.297e^-4	0.83	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	7248662	3L_7248662_SNP [dm3] 3L_7255562_SNP [dm6]	A	G	1.299e^-4	0.83	INTRON CG14830
3L	4488812	3L_4488812_INS [dm3] 3L_4488812_INS [dm6]	T	TCTT	1.299e^-4	0.83	INTRON CG13722
2R	18061084	2R_18061084_SNP [dm3] 2R_22173579_SNP [dm6]	G	T	1.301e^-4	0.83	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
2R	16462800	2R_16462800_SNP [dm3] 2R_20575295_SNP [dm6]	T	G	1.304e^-4	0.83	INTRON qsm
2L	12189637	2L_12189637_SNP [dm3] 2L_12189637_SNP [dm6]	C	T	1.307e^-4	0.83	INTRON aret
X	10295871	X_10295871_SNP [dm3] X_10401838_SNP [dm6]	C	T	1.324e^-4	0.836	INTRON flw
2R	17964922	2R_17964922_SNP [dm3] 2R_22077417_SNP [dm6]	C	T	1.334e^-4	0.836	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16329935	2R_16329935_SNP [dm3] 2R_20442430_SNP [dm6]	T	G	1.343e^-4	0.836	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3L	6501961	3L_6501961_SNP [dm3] 3L_6508861_SNP [dm6]	T	G	1.347e^-4	0.836	INTRON sfl
3R	570979	3R_570979_SNP [dm3] 3R_4745257_SNP [dm6]	T	A	1.351e^-4	0.836	INTRON tacc
2R	19599636	2R_19599636_SNP [dm3] 2R_23712113_SNP [dm6]	T	C	1.366e^-4	0.836	INTERGENIC
X	18877692	X_18877692_SNP [dm3] X_18983659_SNP [dm6]	C	T	1.377e^-4	0.836	INTRON CG43759
2R	19210527	2R_19210527_SNP [dm3] 2R_23323004_SNP [dm6]	G	T	1.379e^-4	0.836	SYNONYMOUS_CODING CG30416 UPSTREAM CG9861
2R	9588271	2R_9588271_SNP [dm3] 2R_13700766_SNP [dm6]	C	A	1.385e^-4	0.836	INTRON fas
2R	11851881	2R_11851881_SNP [dm3] 2R_15964376_SNP [dm6]	G	A	1.389e^-4	0.836	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11853168	2R_11853168_SNP [dm3] 2R_15965663_SNP [dm6]	C	A	1.389e^-4	0.836	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1813054	2R_1813054_SNP [dm3] 2R_5925549_SNP [dm6]	G	T	1.389e^-4	0.836	SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
3R	13948727	3R_13948727_SNP [dm3] 3R_18123005_SNP [dm6]	G	A	1.390e^-4	0.836	INTRON sr	TF binding site mE1_TFBS_inv
X	4800219	X_4800219_SNP [dm3] X_4906186_SNP [dm6]	T	A	1.393e^-4	0.836	UTR_3_PRIME CG42594 UPSTREAM CG6927
2R	18561440	2R_18561440_SNP [dm3] 2R_22673935_SNP [dm6]	C	A	1.400e^-4	0.836	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
2R	16462801	2R_16462801_SNP [dm3] 2R_20575296_SNP [dm6]	C	T	1.407e^-4	0.836	INTRON qsm
X	4808805	X_4808805_SNP [dm3] X_4914772_SNP [dm6]	G	T	1.411e^-4	0.836	UTR_3_PRIME CG32772 DOWNSTREAM CG4041
3L	12305975	3L_12305975_SNP [dm3] 3L_12312875_SNP [dm6]	A	G	1.414e^-4	0.836	DOWNSTREAM CG44355 INTERGENIC
2L	2419462	2L_2419462_SNP [dm3] 2L_2419462_SNP [dm6]	A	G	1.415e^-4	0.836	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	7248664	3L_7248664_SNP [dm3] 3L_7255564_SNP [dm6]	A	T	1.425e^-4	0.836	INTRON CG14830
X	18933755	X_18933755_SNP [dm3] X_19039722_SNP [dm6]	G	A	1.431e^-4	0.836	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10876221	3L_10876221_SNP [dm3] 3L_10883121_SNP [dm6]	G	A	1.437e^-4	0.836	UPSTREAM CG6409 INTRON CG7949	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12320746	3L_12320746_SNP [dm3] 3L_12327646_SNP [dm6]	A	T	1.440e^-4	0.836	INTERGENIC
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	1.441e^-4	0.836	INTERGENIC
2R	14666176	2R_14666176_SNP [dm3] 2R_18778671_SNP [dm6]	A	C	1.448e^-4	0.836	INTERGENIC
3L	6503754	3L_6503754_SNP [dm3] 3L_6510654_SNP [dm6]	C	T	1.449e^-4	0.836	INTRON sfl
2L	13668639	2L_13668639_SNP [dm3] 2L_13668639_SNP [dm6]	A	C	1.454e^-4	0.836	INTRON CG18507
X	19727082	X_19727082_SNP [dm3] X_19833049_SNP [dm6]	G	A	1.454e^-4	0.836	UTR_3_PRIME pico
X	20899987	X_20899987_SNP [dm3] X_21028960_SNP [dm6]	C	G	1.464e^-4	0.836	UTR_3_PRIME CG1529 UPSTREAM CG1532
3R	9869032	3R_9869032_SNP [dm3] 3R_14043310_SNP [dm6]	T	C	1.465e^-4	0.836	INTERGENIC
X	4799615	X_4799615_SNP [dm3] X_4905582_SNP [dm6]	T	G	1.466e^-4	0.836	UTR_3_PRIME CG42594
X	14191620	X_14191620_SNP [dm3] X_14297587_SNP [dm6]	C	T	1.474e^-4	0.836	INTERGENIC
X	20900440	X_20900440_SNP [dm3] X_21029413_SNP [dm6]	G	T	1.480e^-4	0.836	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2R	17661690	2R_17661690_SNP [dm3] 2R_21774185_SNP [dm6]	T	C	1.486e^-4	0.836	INTRON CG4021
2L	8471331	2L_8471331_SNP [dm3] 2L_8471331_SNP [dm6]	G	A	1.487e^-4	0.836	INTRON d
2L	5014016	2L_5014016_SNP [dm3] 2L_5014016_SNP [dm6]	T	G	1.492e^-4	0.836	NON_SYNONYMOUS_CODING vkg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18934802	X_18934802_SNP [dm3] X_19040769_SNP [dm6]	G	A	1.496e^-4	0.836	INTERGENIC
3L	10836603	3L_10836603_SNP [dm3] 3L_10843503_SNP [dm6]	A	T	1.496e^-4	0.836	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5881077	2R_5881077_SNP [dm3] 2R_9993572_SNP [dm6]	T	C	1.506e^-4	0.836	DOWNSTREAM Pka-R2 & 1 other INTERGENIC
3L	17022610	3L_17022610_SNP [dm3] 3L_17029510_SNP [dm6]	A	G	1.511e^-4	0.836	SYNONYMOUS_CODING CG7730 DOWNSTREAM Ilp8	TF binding site mE1_TFBS_inv
3L	2887796	3L_2887796_SNP [dm3] 3L_2887796_SNP [dm6]	T	A	1.515e^-4	0.836	INTRON spz5
2L	8709823	2L_8709823_SNP [dm3] 2L_8709823_SNP [dm6]	A	T	1.517e^-4	0.836	UPSTREAM Hnf4 DOWNSTREAM raw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6757434	2R_6757434_SNP [dm3] 2R_10869929_SNP [dm6]	G	C	1.520e^-4	0.836	INTRON CG30015
2R	18682144	2R_18682144_SNP [dm3] 2R_22794639_SNP [dm6]	G	A	1.520e^-4	0.836	INTRON CG42260
3L	10028701	3L_10028701_SNP [dm3] 3L_10035601_SNP [dm6]	G	A	1.523e^-4	0.836	INTRON dpr6
X	5808217	X_5808217_SNP [dm3] X_5914184_SNP [dm6]	G	A	1.523e^-4	0.836	SYNONYMOUS_CODING CG3011 UPSTREAM CR44108	TF binding site mE1_TFBS_cad
2L	14927974	2L_14927974_SNP [dm3] 2L_14927974_SNP [dm6]	C	T	1.526e^-4	0.836	SYNONYMOUS_CODING CG3491 INTRON CG42313
2R	18681003	2R_18681003_SNP [dm3] 2R_22793498_SNP [dm6]	G	A	1.539e^-4	0.839	INTRON CG42260
2R	17315450	2R_17315450_SNP [dm3] 2R_21427945_SNP [dm6]	A	G	1.541e^-4	0.839	INTRON Sdc
3R	1297514	3R_1297514_SNP [dm3] 3R_5471792_SNP [dm6]	G	A	1.554e^-4	0.843	INTRON Snr1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2607395	3L_2607395_SNP [dm3] 3L_2607395_SNP [dm6]	G	A	1.559e^-4	0.843	INTRON Pxn
X	18752345	X_18752345_SNP [dm3] X_18858312_SNP [dm6]	T	A	1.562e^-4	0.843	SYNONYMOUS_CODING CG7288 UPSTREAM CG7322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
2R	11845732	2R_11845732_SNP [dm3] 2R_15958227_SNP [dm6]	T	C	1.575e^-4	0.847	SYNONYMOUS_CODING Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10269741	2L_10269741_SNP [dm3] 2L_10269741_SNP [dm6]	T	A	1.577e^-4	0.847	UPSTREAM Mulk DOWNSTREAM CG4953 INTRON CG4957	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	1.585e^-4	0.848	INTRON CG6225
2R	14440871	2R_14440871_DEL [dm3] 2R_18553366_DEL [dm6]	GG	G	1.593e^-4	0.85	DOWNSTREAM GEFmeso INTERGENIC
2R	16731942	2R_16731942_SNP [dm3] 2R_20844437_SNP [dm6]	C	A	1.596e^-4	0.85	INTERGENIC
2L	13668606	2L_13668606_SNP [dm3] 2L_13668606_SNP [dm6]	T	C	1.608e^-4	0.853	INTRON CG18507
3R	15491338	3R_15491338_DEL [dm3] 3R_19665616_DEL [dm6]	AA	A	1.624e^-4	0.853	INTRON CG7432
X	1835128	X_1835128_SNP [dm3] X_1941095_SNP [dm6]	C	T	1.630e^-4	0.853	UPSTREAM Hr4 INTRON CG3587	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Trl
2L	1547270	2L_1547270_SNP [dm3] 2L_1547270_SNP [dm6]	G	A	1.635e^-4	0.853	INTERGENIC
2R	7206507	2R_7206507_SNP [dm3] 2R_11319002_SNP [dm6]	G	C	1.637e^-4	0.853	UPSTREAM nompA DOWNSTREAM Or47b INTERGENIC
X	22231585	X_22231585_SNP [dm3] X_22829749_SNP [dm6]	G	A	1.637e^-4	0.853	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	9306919	2R_9306919_SNP [dm3] 2R_13419414_SNP [dm6]	T	A	1.642e^-4	0.853	INTRON CG42321
3L	18269343	3L_18269343_SNP [dm3] 3L_18276243_SNP [dm6]	C	A	1.643e^-4	0.853	INTERGENIC
2R	11634764	2R_11634764_SNP [dm3] 2R_15747259_SNP [dm6]	G	A	1.646e^-4	0.853	INTRON CG30089	TF binding site mE1_TFBS_cad
X	20899324	X_20899324_SNP [dm3] X_21028297_SNP [dm6]	T	G	1.649e^-4	0.853	UTR_5_PRIME CG1532 DOWNSTREAM CG1529	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19779720	3R_19779720_SNP [dm3] 3R_23953998_SNP [dm6]	G	A	1.667e^-4	0.86	SYNONYMOUS_CODING Aats-glupro	TF binding site mE1_TFBS_cad
2R	18561468	2R_18561468_SNP [dm3] 2R_22673963_SNP [dm6]	A	T	1.672e^-4	0.861	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
3R	19073184	3R_19073184_SNP [dm3] 3R_23247462_SNP [dm6]	G	A	1.681e^-4	0.863	INTRON CG4467
2R	17964199	2R_17964199_SNP [dm3] 2R_22076694_SNP [dm6]	A	G	1.694e^-4	0.866	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16462798	2R_16462798_SNP [dm3] 2R_20575293_SNP [dm6]	C	T	1.710e^-4	0.866	INTRON qsm
2L	8444980	2L_8444980_SNP [dm3] 2L_8444980_SNP [dm6]	G	A	1.716e^-4	0.866	NON_SYNONYMOUS_CODING CG31897 DOWNSTREAM U26
3L	4129910	3L_4129910_INS [dm3] 3L_4129910_INS [dm6]	T	TA	1.717e^-4	0.866	INTRON ens
2L	10452573	2L_10452573_SNP [dm3] 2L_10452573_SNP [dm6]	C	A	1.727e^-4	0.866	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
3L	6488488	3L_6488488_SNP [dm3] 3L_6495388_SNP [dm6]	A	C	1.734e^-4	0.866	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	16940941	2R_16940941_SNP [dm3] 2R_21053436_SNP [dm6]	G	A	1.742e^-4	0.866	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_sens
2R	16940966	2R_16940966_SNP [dm3] 2R_21053461_SNP [dm6]	A	G	1.742e^-4	0.866	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_sens
2L	7591073	2L_7591073_SNP [dm3] 2L_7591073_SNP [dm6]	T	C	1.747e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3R	776516	3R_776516_SNP [dm3] 3R_4950794_SNP [dm6]	T	C	1.751e^-4	0.866	INTRON UbcD6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10943591	2R_10943591_SNP [dm3] 2R_15056086_SNP [dm6]	C	A	1.751e^-4	0.866	NON_SYNONYMOUS_CODING CG33467
3L	10836598	3L_10836598_SNP [dm3] 3L_10843498_SNP [dm6]	T	G	1.752e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5110109	2R_5110109_SNP [dm3] 2R_9222604_SNP [dm6]	A	T	1.756e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5165765	2L_5165765_SNP [dm3] 2L_5165765_SNP [dm6]	G	A	1.756e^-4	0.866	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	13593184	2R_13593184_SNP [dm3] 2R_17705679_SNP [dm6]	C	T	1.767e^-4	0.866	INTRON CG6424
2L	2666949	2L_2666949_SNP [dm3] 2L_2666949_SNP [dm6]	G	T	1.768e^-4	0.866	DOWNSTREAM CG9879 INTERGENIC
3R	12523363	3R_12523363_SNP [dm3] 3R_16697641_SNP [dm6]	T	C	1.775e^-4	0.866	INTRON Ubx	regulatory region REDfly_CRMs
2L	22008197	2L_22008197_SNP [dm3] 2L_22008197_SNP [dm6]	T	G	1.792e^-4	0.866	INTERGENIC
2L	18654240	2L_18654240_SNP [dm3] 2L_18654240_SNP [dm6]	C	A	1.794e^-4	0.866	INTRON MESR3	TF binding site mE1_TFBS_cnc
3L	10860251	3L_10860251_SNP [dm3] 3L_10867151_SNP [dm6]	T	C	1.798e^-4	0.866	INTRON tna	TF binding site mE1_TFBS_HSA
3L	9992184	3L_9992184_SNP [dm3] 3L_9999084_SNP [dm6]	C	T	1.799e^-4	0.866	INTRON dpr6
3L	10300719	3L_10300719_SNP [dm3] 3L_10307619_SNP [dm6]	A	G	1.802e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2766061	3L_2766061_SNP [dm3] 3L_2766061_SNP [dm6]	C	A	1.804e^-4	0.866	UPSTREAM CG1240 INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	16731965	2L_16731965_SNP [dm3] 2L_16731965_SNP [dm6]	T	G	1.810e^-4	0.866	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	4934321	3R_4934321_SNP [dm3] 3R_9108599_SNP [dm6]	G	A	1.822e^-4	0.866	INTRON pum
X	3539015	X_3539015_SNP [dm3] X_3644982_SNP [dm6]	A	C	1.831e^-4	0.866	INTRON AstA-R1
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	1.833e^-4	0.866	DOWNSTREAM CG13500 INTERGENIC
2L	9458115	2L_9458115_SNP [dm3] 2L_9458115_SNP [dm6]	T	C	1.834e^-4	0.866	INTRON numb
3R	10850079	3R_10850079_SNP [dm3] 3R_15024357_SNP [dm6]	G	C	1.838e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	16453370	2R_16453370_SNP [dm3] 2R_20565865_SNP [dm6]	G	A	1.838e^-4	0.866	INTRON qsm
3L	9969910	3L_9969910_INS [dm3] 3L_9976810_INS [dm6]	G	GAGTGGCAAG	1.840e^-4	0.866	INTRON dpr6
3R	22050014	3R_22050014_SNP [dm3] 3R_26224292_SNP [dm6]	C	G	1.847e^-4	0.866	INTERGENIC
X	6707699	X_6707699_SNP [dm3] X_6813666_SNP [dm6]	G	A	1.849e^-4	0.866	UTR_3_PRIME pod1 UPSTREAM iav DOWNSTREAM pod1
3L	3777558	3L_3777558_SNP [dm3] 3L_3777558_SNP [dm6]	G	A	1.867e^-4	0.866	INTRON CG32264
3L	6499434	3L_6499434_SNP [dm3] 3L_6506334_SNP [dm6]	C	T	1.889e^-4	0.866	INTRON sfl
3R	1096617	3R_1096617_SNP [dm3] 3R_5270895_SNP [dm6]	G	T	1.895e^-4	0.866	UTR_3_PRIME mtd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8126420	3L_8126420_SNP [dm3] 3L_8133320_SNP [dm6]	G	A	1.897e^-4	0.866	SYNONYMOUS_CODING CG7504
2R	14830848	2R_14830848_SNP [dm3] 2R_18943343_SNP [dm6]	G	A	1.901e^-4	0.866	INTRON sano
2L	8444571	2L_8444571_SNP [dm3] 2L_8444571_SNP [dm6]	G	C	1.907e^-4	0.866	SYNONYMOUS_CODING CG31897
2R	17693896	2R_17693896_SNP [dm3] 2R_21806391_SNP [dm6]	C	A	1.912e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	10863968	2R_10863968_SNP [dm3] 2R_14976463_SNP [dm6]	A	G	1.923e^-4	0.866	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5264412	3L_5264412_SNP [dm3] 3L_5271312_SNP [dm6]	A	T	1.925e^-4	0.866	INTRON shep
2R	10487398	2R_10487398_SNP [dm3] 2R_14599893_SNP [dm6]	A	G	1.934e^-4	0.866	SYNONYMOUS_CODING RpI1
2R	16452141	2R_16452141_SNP [dm3] 2R_20564636_SNP [dm6]	C	T	1.936e^-4	0.866	INTRON qsm
2R	1811222	2R_1811222_SNP [dm3] 2R_5923717_SNP [dm6]	A	T	1.940e^-4	0.866	INTRON CG43366	transposable element FlyBase
3L	1674174	3L_1674174_SNP [dm3] 3L_1674174_SNP [dm6]	T	A	1.944e^-4	0.866	UPSTREAM CG7991 INTERGENIC
2L	20390967	2L_20390967_SNP [dm3] 2L_20390967_SNP [dm6]	G	A	1.959e^-4	0.866	INTRON CG10947
2L	3693352	2L_3693352_SNP [dm3] 2L_3693352_SNP [dm6]	T	C	1.960e^-4	0.866	UTR_3_PRIME Acp24A4 UPSTREAM CG16704 & 1 other DOWNSTREAM Acp24A4 & 1 other
3L	10836575	3L_10836575_SNP [dm3] 3L_10843475_SNP [dm6]	T	A	1.960e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5114912	2R_5114912_SNP [dm3] 2R_9227407_SNP [dm6]	T	C	1.962e^-4	0.866	DOWNSTREAM hig INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20914260	3R_20914260_SNP [dm3] 3R_25088538_SNP [dm6]	C	G	1.964e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13198675	2R_13198675_SNP [dm3] 2R_17311170_SNP [dm6]	T	G	1.967e^-4	0.866	INTRON mbl
2R	18561455	2R_18561455_SNP [dm3] 2R_22673950_SNP [dm6]	G	C	1.975e^-4	0.866	UPSTREAM CR44761 DOWNSTREAM RYBP INTERGENIC	TF binding site mE1_TFBS_sens
2R	4762841	2R_4762841_SNP [dm3] 2R_8875336_SNP [dm6]	T	A	1.983e^-4	0.866	INTRON RyR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	18931491	3L_18931491_SNP [dm3] 3L_18938391_SNP [dm6]	T	C	1.989e^-4	0.866	INTRON CG32204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2667021	2L_2667021_SNP [dm3] 2L_2667021_SNP [dm6]	A	T	1.992e^-4	0.866	DOWNSTREAM CG9879 INTERGENIC
2L	7232232	2L_7232232_INS [dm3] 2L_7232232_INS [dm6]	G	GTAG	1.995e^-4	0.866	CODON_INSERTION CG43800 INTRON Ndae1
3R	26701010	3R_26701010_DEL [dm3] 3R_30875288_DEL [dm6]	CACGATCCTC	C	2.000e^-4	0.866	CODON_DELETION CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6935741	2L_6935741_SNP [dm3] 2L_6935741_SNP [dm6]	A	T	2.002e^-4	0.866	NON_SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18933510	X_18933510_SNP [dm3] X_19039477_SNP [dm6]	C	T	2.014e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	10851159	3L_10851159_SNP [dm3] 3L_10858059_SNP [dm6]	T	A	2.018e^-4	0.866	UTR_5_PRIME tna UPSTREAM tna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18849413	3L_18849413_SNP [dm3] 3L_18856313_SNP [dm6]	A	G	2.018e^-4	0.866	UPSTREAM CR45388 INTERGENIC
X	14221252	X_14221252_SNP [dm3] X_14327219_SNP [dm6]	C	T	2.020e^-4	0.866	INTRON dpr8	TF binding site mE1_TFBS_inv
2L	13140526	2L_13140526_SNP [dm3] 2L_13140526_SNP [dm6]	A	G	2.023e^-4	0.866	INTERGENIC
2L	1753882	2L_1753882_SNP [dm3] 2L_1753882_SNP [dm6]	C	G	2.035e^-4	0.866	INTERGENIC
3R	18490860	3R_18490860_SNP [dm3] 3R_22665138_SNP [dm6]	T	A	2.040e^-4	0.866	SYNONYMOUS_CODING CG45058 UTR_5_PRIME CG45058	TF binding site mE1_TFBS_chinmo
2L	2688024	2L_2688024_SNP [dm3] 2L_2688024_SNP [dm6]	C	T	2.045e^-4	0.866	INTRON CG31690
3R	14819633	3R_14819633_SNP [dm3] 3R_18993911_SNP [dm6]	C	A	2.060e^-4	0.866	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	2711295	3L_2711295_SNP [dm3] 3L_2711295_SNP [dm6]	C	T	2.065e^-4	0.866	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14221389	X_14221389_SNP [dm3] X_14327356_SNP [dm6]	A	T	2.076e^-4	0.866	INTRON dpr8
3L	6948699	3L_6948699_SNP [dm3] 3L_6955599_SNP [dm6]	T	G	2.077e^-4	0.866	UPSTREAM CG9948 & 1 other INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	2.102e^-4	0.866	DOWNSTREAM CG14476 INTERGENIC
X	4804348	X_4804348_SNP [dm3] X_4910315_SNP [dm6]	C	A	2.107e^-4	0.866	INTRON CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20791891	2L_20791891_SNP [dm3] 2L_20791891_SNP [dm6]	G	A	2.113e^-4	0.866	INTRON vari	TF binding site mE1_TFBS_Trl
2L	10983528	2L_10983528_SNP [dm3] 2L_10983528_SNP [dm6]	G	A	2.122e^-4	0.866	SYNONYMOUS_CODING piwi
2L	16488814	2L_16488814_SNP [dm3] 2L_16488814_SNP [dm6]	A	G	2.124e^-4	0.866	NON_SYNONYMOUS_CODING CG4580	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
2L	2668771	2L_2668771_SNP [dm3] 2L_2668771_SNP [dm6]	A	G	2.134e^-4	0.866	INTERGENIC
2L	4674829	2L_4674829_SNP [dm3] 2L_4674829_SNP [dm6]	G	C	2.136e^-4	0.866	INTERGENIC
3L	6500223	3L_6500223_SNP [dm3] 3L_6507123_SNP [dm6]	G	A	2.139e^-4	0.866	INTRON sfl
2R	9177811	2R_9177811_SNP [dm3] 2R_13290306_SNP [dm6]	G	T	2.140e^-4	0.866	INTRON Dh31-R
2R	9177812	2R_9177812_SNP [dm3] 2R_13290307_SNP [dm6]	A	T	2.140e^-4	0.866	INTRON Dh31-R
3L	8640168	3L_8640168_SNP [dm3] 3L_8647068_SNP [dm6]	C	T	2.147e^-4	0.866	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23247928	3R_23247928_SNP [dm3] 3R_27422206_SNP [dm6]	G	A	2.150e^-4	0.866	INTRON side
X	18058386	X_18058386_SNP [dm3] X_18164353_SNP [dm6]	T	C	2.156e^-4	0.866	INTRON Frq1
3L	6948470	3L_6948470_SNP [dm3] 3L_6955370_SNP [dm6]	T	C	2.158e^-4	0.866	UPSTREAM CG9948 INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2R	14829638	2R_14829638_SNP [dm3] 2R_18942133_SNP [dm6]	G	T	2.173e^-4	0.866	INTRON sano
3R	11552138	3R_11552138_DEL [dm3] 3R_15726416_DEL [dm6]	AA	A	2.175e^-4	0.866	INTERGENIC
X	20900101	X_20900101_SNP [dm3] X_21029074_SNP [dm6]	A	C	2.179e^-4	0.866	UTR_3_PRIME CG1529 UPSTREAM CG1532 DOWNSTREAM CG1529
X	4807374	X_4807374_SNP [dm3] X_4913341_SNP [dm6]	C	T	2.181e^-4	0.866	SYNONYMOUS_CODING CG32772	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26429885	3R_26429885_SNP [dm3] 3R_30604163_SNP [dm6]	G	C	2.181e^-4	0.866	UPSTREAM PH4alphaNE3 DOWNSTREAM CG31021 INTERGENIC
2L	6124736	2L_6124736_DEL [dm3] 2L_6124736_DEL [dm6]	AATATGGTACA...	A	2.182e^-4	0.866	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
3L	1674166	3L_1674166_DEL [dm3] 3L_1674166_DEL [dm6]	CC	C	2.182e^-4	0.866	UPSTREAM CG7991 INTERGENIC
3L	6967082	3L_6967082_SNP [dm3] 3L_6973982_SNP [dm6]	G	A	2.183e^-4	0.866	INTRON Galphai	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6689709	3L_6689709_SNP [dm3] 3L_6696609_SNP [dm6]	A	G	2.199e^-4	0.866	INTRON SP1173
3L	6509590	3L_6509590_SNP [dm3] 3L_6516490_SNP [dm6]	C	A	2.202e^-4	0.866	INTRON sfl
2R	6722174	2R_6722174_SNP [dm3] 2R_10834669_SNP [dm6]	C	A	2.206e^-4	0.866	UPSTREAM CG12344 INTRON CG12344
2R	15828661	2R_15828661_SNP [dm3] 2R_19941156_SNP [dm6]	T	A	2.219e^-4	0.866	UPSTREAM CR43421 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20900088	X_20900088_SNP [dm3] X_21029061_SNP [dm6]	C	T	2.223e^-4	0.866	UTR_3_PRIME CG1529 UPSTREAM CG1532
3L	20959498	3L_20959498_SNP [dm3] 3L_20966398_SNP [dm6]	T	A	2.226e^-4	0.866	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287
3R	19713614	3R_19713614_SNP [dm3] 3R_23887892_SNP [dm6]	A	G	2.227e^-4	0.866	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	2.250e^-4	0.866	INTRON phl & 1 other
2L	20382803	2L_20382803_SNP [dm3] 2L_20382803_SNP [dm6]	A	G	2.250e^-4	0.866	UPSTREAM CG16798 INTERGENIC
3L	6684864	3L_6684864_SNP [dm3] 3L_6691764_SNP [dm6]	C	A	2.250e^-4	0.866	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5709205	X_5709205_SNP [dm3] X_5815172_SNP [dm6]	C	T	2.264e^-4	0.866	NON_SYNONYMOUS_CODING CG15766	TF binding site mE1_TFBS_chinmo
3R	9869036	3R_9869036_SNP [dm3] 3R_14043314_SNP [dm6]	T	G	2.266e^-4	0.866	INTERGENIC
2R	17145655	2R_17145655_SNP [dm3] 2R_21258150_SNP [dm6]	G	A	2.269e^-4	0.866	INTRON Rgk3
2R	19191851	2R_19191851_SNP [dm3] 2R_23304328_SNP [dm6]	G	T	2.270e^-4	0.866	INTERGENIC
3R	10938918	3R_10938918_SNP [dm3] 3R_15113196_SNP [dm6]	G	C	2.273e^-4	0.866	INTRON CG42788
3L	4596886	3L_4596886_SNP [dm3] 3L_4596886_SNP [dm6]	G	A	2.287e^-4	0.866	INTRON Src64B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4596887	3L_4596887_SNP [dm3] 3L_4596887_SNP [dm6]	G	A	2.287e^-4	0.866	INTRON Src64B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12170229	3L_12170229_SNP [dm3] 3L_12177129_SNP [dm6]	T	A	2.295e^-4	0.866	UPSTREAM CAH2 INTERGENIC
2R	9307308	2R_9307308_SNP [dm3] 2R_13419803_SNP [dm6]	T	C	2.296e^-4	0.866	SYNONYMOUS_CODING CG42321
X	22231583	X_22231583_SNP [dm3] X_22829747_SNP [dm6]	G	T	2.301e^-4	0.866	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	13814681	3R_13814681_SNP [dm3] 3R_17988959_SNP [dm6]	G	A	2.304e^-4	0.866	INTRON cpo
X	18934678	X_18934678_SNP [dm3] X_19040645_SNP [dm6]	G	T	2.315e^-4	0.866	INTERGENIC
3R	27117270	3R_27117270_SNP [dm3] 3R_31291548_SNP [dm6]	A	C	2.320e^-4	0.866	INTERGENIC
2L	15166366	2L_15166366_SNP [dm3] 2L_15166366_SNP [dm6]	A	G	2.328e^-4	0.866	SYNONYMOUS_CODING CG4168
2L	8389054	2L_8389054_SNP [dm3] 2L_8389054_SNP [dm6]	A	G	2.332e^-4	0.866	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
2R	12473089	2R_12473089_SNP [dm3] 2R_16585584_SNP [dm6]	T	A	2.339e^-4	0.866	UPSTREAM RpLP2 DOWNSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4155890	2L_4155890_SNP [dm3] 2L_4155890_SNP [dm6]	G	A	2.342e^-4	0.866	INTERGENIC
2L	20383493	2L_20383493_DEL [dm3] 2L_20383493_DEL [dm6]	CAATTTGGTCCTAAATAAAA...	C	2.348e^-4	0.866	INTERGENIC
X	14191313	X_14191313_SNP [dm3] X_14297280_SNP [dm6]	A	G	2.351e^-4	0.866	INTERGENIC
2R	10979978	2R_10979978_SNP [dm3] 2R_15092473_SNP [dm6]	G	A	2.362e^-4	0.866	DOWNSTREAM CR44457 INTERGENIC
2L	16731493	2L_16731493_SNP [dm3] 2L_16731493_SNP [dm6]	A	G	2.372e^-4	0.866	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6086972	2L_6086972_DEL [dm3] 2L_6086972_DEL [dm6]	CGTC	C	2.374e^-4	0.866	INTRON Kr-h1
3L	5692732	3L_5692732_SNP [dm3] 3L_5699632_SNP [dm6]	T	G	2.388e^-4	0.866	INTRON sif	TF binding site mE1_TFBS_chinmo
2R	1811232	2R_1811232_SNP [dm3] 2R_5923727_SNP [dm6]	T	C	2.388e^-4	0.866	INTRON CG43366	transposable element FlyBase
X	2905197	X_2905197_SNP [dm3] X_3011164_SNP [dm6]	T	C	2.388e^-4	0.866	INTRON kirre
3L	23075262	3L_23075262_DEL [dm3] 3L_23082162_DEL [dm6]	AAAATCCA	A	2.402e^-4	0.866	INTERGENIC
2R	19870822	2R_19870822_SNP [dm3] 2R_23983299_SNP [dm6]	G	C	2.403e^-4	0.866	INTRON Sox14	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9166205	2L_9166205_SNP [dm3] 2L_9166205_SNP [dm6]	T	A	2.406e^-4	0.866	UPSTREAM tai DOWNSTREAM CG13108 INTRON CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10836679	3L_10836679_SNP [dm3] 3L_10843579_SNP [dm6]	C	T	2.409e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19209603	2R_19209603_SNP [dm3] 2R_23322080_SNP [dm6]	A	G	2.412e^-4	0.866	INTRON CG30416
3L	18701968	3L_18701968_SNP [dm3] 3L_18708868_SNP [dm6]	G	T	2.419e^-4	0.866	DOWNSTREAM CR44674 INTERGENIC
3R	9542341	3R_9542341_SNP [dm3] 3R_13716619_SNP [dm6]	C	A	2.421e^-4	0.866	DOWNSTREAM CG9602 INTRON CG34383	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_sens
2R	14497037	2R_14497037_SNP [dm3] 2R_18609532_SNP [dm6]	T	A	2.422e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20425041	2R_20425041_SNP [dm3] 2R_24537518_SNP [dm6]	G	A	2.424e^-4	0.866	UTR_5_PRIME ITP DOWNSTREAM CG11413 INTRON CG4622
3L	6949098	3L_6949098_SNP [dm3] 3L_6955998_SNP [dm6]	C	T	2.429e^-4	0.866	START_GAINED CG9948 UTR_5_PRIME CG9948 UPSTREAM CG9948 & 1 other DOWNSTREAM CG10075	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	3223416	2L_3223416_SNP [dm3] 2L_3223416_SNP [dm6]	G	A	2.438e^-4	0.866	INTERGENIC
2R	14789513	2R_14789513_SNP [dm3] 2R_18902008_SNP [dm6]	A	G	2.438e^-4	0.866	INTRON sano
X	2905189	X_2905189_SNP [dm3] X_3011156_SNP [dm6]	T	C	2.439e^-4	0.866	INTRON kirre
3L	17686267	3L_17686267_SNP [dm3] 3L_17693167_SNP [dm6]	T	C	2.440e^-4	0.866	INTRON Ccn
3L	9515386	3L_9515386_SNP [dm3] 3L_9522286_SNP [dm6]	C	A	2.444e^-4	0.866	INTRON CG33700
2R	7622192	2R_7622192_SNP [dm3] 2R_11734687_SNP [dm6]	A	T	2.458e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10946223	2R_10946223_SNP [dm3] 2R_15058718_SNP [dm6]	A	C	2.464e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5022016	3L_5022016_SNP [dm3] 3L_5022016_SNP [dm6]	A	C	2.464e^-4	0.866	INTRON Con	TF binding site mE1_TFBS_chinmo
2L	8444574	2L_8444574_SNP [dm3] 2L_8444574_SNP [dm6]	T	G	2.467e^-4	0.866	SYNONYMOUS_CODING CG31897
2R	4462949	2R_4462949_SNP [dm3] 2R_8575444_SNP [dm6]	A	G	2.467e^-4	0.866	INTRON CG42326
3L	5140934	3L_5140934_SNP [dm3] 3L_5147834_SNP [dm6]	C	T	2.470e^-4	0.866	SYNONYMOUS_CODING Aats-ala-m	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8344650	X_8344650_SNP [dm3] X_8450617_SNP [dm6]	G	A	2.470e^-4	0.866	INTRON org-1
3L	2661246	3L_2661246_SNP [dm3] 3L_2661246_SNP [dm6]	C	T	2.474e^-4	0.866	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
2R	19209616	2R_19209616_SNP [dm3] 2R_23322093_SNP [dm6]	T	C	2.481e^-4	0.866	INTRON CG30416
3L	5382362	3L_5382362_SNP [dm3] 3L_5389262_SNP [dm6]	A	T	2.482e^-4	0.866	INTERGENIC
2L	6309720	2L_6309720_SNP [dm3] 2L_6309720_SNP [dm6]	A	G	2.487e^-4	0.866	UPSTREAM CG43922 DOWNSTREAM CG13984 INTRON Ddr
3L	10639931	3L_10639931_SNP [dm3] 3L_10646831_SNP [dm6]	G	A	2.502e^-4	0.866	INTRON CG32066
3L	6511929	3L_6511929_SNP [dm3] 3L_6518829_SNP [dm6]	C	T	2.503e^-4	0.866	INTRON sfl
3L	19171286	3L_19171286_SNP [dm3] 3L_19178186_SNP [dm6]	T	A	2.506e^-4	0.866	INTRON fz2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17193030	2R_17193030_SNP [dm3] 2R_21305525_SNP [dm6]	T	C	2.508e^-4	0.866	SYNONYMOUS_CODING CG42672	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	416904	3L_416904_SNP [dm3] 3L_416904_SNP [dm6]	A	G	2.509e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10835572	3L_10835572_SNP [dm3] 3L_10842472_SNP [dm6]	A	T	2.510e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9177836	2R_9177836_MNP [dm3] 2R_13290331_MNP [dm6]	TGAA	ACGC	2.514e^-4	0.866	INTRON Dh31-R
2R	20425060	2R_20425060_SNP [dm3] 2R_24537537_SNP [dm6]	T	C	2.516e^-4	0.866	DOWNSTREAM CG11413 INTRON CG4622 & 1 other
2R	14666328	2R_14666328_SNP [dm3] 2R_18778823_SNP [dm6]	C	A	2.528e^-4	0.866	INTERGENIC
2L	9821660	2L_9821660_SNP [dm3] 2L_9821660_SNP [dm6]	A	T	2.536e^-4	0.866	INTRON nAChRalpha6
2R	8141633	2R_8141633_SNP [dm3] 2R_12254128_SNP [dm6]	G	C	2.543e^-4	0.866	UTR_5_PRIME CG13168
2R	16615608	2R_16615608_SNP [dm3] 2R_20728103_SNP [dm6]	C	T	2.546e^-4	0.866	NON_SYNONYMOUS_CODING CG13442 INTRON dpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	14348501	X_14348501_SNP [dm3] X_14454468_SNP [dm6]	G	A	2.552e^-4	0.866	INTRON dpr8
2R	9594283	2R_9594283_SNP [dm3] 2R_13706778_SNP [dm6]	C	T	2.560e^-4	0.866	SYNONYMOUS_CODING fas	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	14796652	3L_14796652_SNP [dm3] 3L_14803552_SNP [dm6]	G	C	2.561e^-4	0.866	UPSTREAM gnu INTERGENIC
3L	12039599	3L_12039599_SNP [dm3] 3L_12046499_SNP [dm6]	G	A	2.562e^-4	0.866	INTRON rols
3L	10632147	3L_10632147_SNP [dm3] 3L_10639047_SNP [dm6]	T	A	2.563e^-4	0.866	UPSTREAM E_z_ & 1 other INTRON CG8009
3L	7055762	3L_7055762_SNP [dm3] 3L_7062662_SNP [dm6]	A	T	2.564e^-4	0.866	NON_SYNONYMOUS_CODING CG8641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	15174089	X_15174089_SNP [dm3] X_15280056_SNP [dm6]	G	A	2.565e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	5138003	2R_5138003_SNP [dm3] 2R_9250498_SNP [dm6]	A	G	2.565e^-4	0.866	INTERGENIC
2R	6994779	2R_6994779_SNP [dm3] 2R_11107274_SNP [dm6]	C	A	2.570e^-4	0.866	UPSTREAM luna INTRON luna	TF binding site mE1_TFBS_Trl
2L	2400174	2L_2400174_SNP [dm3] 2L_2400174_SNP [dm6]	C	G	2.587e^-4	0.866	UPSTREAM VGlut INTRON VGlut
3R	9816449	3R_9816449_SNP [dm3] 3R_13990727_SNP [dm6]	G	A	2.596e^-4	0.866	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	6488509	3L_6488509_SNP [dm3] 3L_6495409_SNP [dm6]	G	A	2.598e^-4	0.866	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3L	2772431	3L_2772431_SNP [dm3] 3L_2772431_SNP [dm6]	A	T	2.603e^-4	0.866	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	1813542	2R_1813542_SNP [dm3] 2R_5926037_SNP [dm6]	A	C	2.613e^-4	0.866	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19383469	3L_19383469_SNP [dm3] 3L_19390369_SNP [dm6]	C	T	2.616e^-4	0.866	DOWNSTREAM ms_3_76Ba INTRON CG32206
2R	11361352	2R_11361352_SNP [dm3] 2R_15473847_SNP [dm6]	A	G	2.620e^-4	0.866	INTRON CG8180	TF binding site mE1_TFBS_chinmo
X	14890983	X_14890983_SNP [dm3] X_14996950_SNP [dm6]	C	A	2.626e^-4	0.866	INTRON eag	TF binding site mE1_TFBS_sens
X	5122089	X_5122089_SNP [dm3] X_5228056_SNP [dm6]	C	A	2.631e^-4	0.866	INTRON CG15465 & 1 other
X	8261433	X_8261433_SNP [dm3] X_8367400_SNP [dm6]	C	T	2.632e^-4	0.866	UPSTREAM nAChRalpha3 INTERGENIC
2R	10941486	2R_10941486_SNP [dm3] 2R_15053981_SNP [dm6]	G	T	2.641e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11845496	2R_11845496_SNP [dm3] 2R_15957991_SNP [dm6]	T	C	2.645e^-4	0.866	SPLICE_SITE_REGION Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	2.656e^-4	0.866	INTRON bnl
3R	13948967	3R_13948967_DEL [dm3] 3R_18123245_DEL [dm6]	GCAAG	G	2.659e^-4	0.866	INTRON sr	TF binding site mE1_TFBS_inv
2L	11640067	2L_11640067_SNP [dm3] 2L_11640067_SNP [dm6]	C	T	2.660e^-4	0.866	INTERGENIC
3L	14781715	3L_14781715_SNP [dm3] 3L_14788615_SNP [dm6]	T	C	2.666e^-4	0.866	NON_SYNONYMOUS_CODING Tdrd3	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10858890	2L_10858890_SNP [dm3] 2L_10858890_SNP [dm6]	T	C	2.670e^-4	0.866	UPSTREAM ial INTRON Stam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20390311	2L_20390311_SNP [dm3] 2L_20390311_SNP [dm6]	C	G	2.672e^-4	0.866	INTRON CG10947	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	6502029	3L_6502029_INS [dm3] 3L_6508929_INS [dm6]	T	TGCA	2.678e^-4	0.866	INTRON sfl
2L	18353658	2L_18353658_SNP [dm3] 2L_18353658_SNP [dm6]	A	T	2.678e^-4	0.866	INTRON Fas3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10237012	3R_10237012_SNP [dm3] 3R_14411290_SNP [dm6]	T	C	2.688e^-4	0.866	INTRON cv-c
3L	6502002	3L_6502002_SNP [dm3] 3L_6508902_SNP [dm6]	T	C	2.689e^-4	0.866	INTRON sfl
3R	15652162	3R_15652162_SNP [dm3] 3R_19826440_SNP [dm6]	G	A	2.689e^-4	0.866	INTRON bnl
X	7909576	X_7909576_SNP [dm3] X_8015543_SNP [dm6]	A	G	2.696e^-4	0.866	INTRON Tbh
2L	8116809	2L_8116809_SNP [dm3] 2L_8116809_SNP [dm6]	G	A	2.711e^-4	0.866	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8420787	3L_8420787_SNP [dm3] 3L_8427687_SNP [dm6]	A	C	2.717e^-4	0.866	UTR_3_PRIME Cbl INTRON Cbl
X	4822188	X_4822188_SNP [dm3] X_4928155_SNP [dm6]	A	T	2.722e^-4	0.866	INTRON CG44774	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14497222	2R_14497222_SNP [dm3] 2R_18609717_SNP [dm6]	G	C	2.725e^-4	0.866	INTRON GEFmeso
2R	19897084	2R_19897084_SNP [dm3] 2R_24009561_SNP [dm6]	A	G	2.726e^-4	0.866	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
3L	12476301	3L_12476301_SNP [dm3] 3L_12483201_SNP [dm6]	T	C	2.733e^-4	0.866	INTRON CG10663 & 1 other
3R	4568243	3R_4568243_SNP [dm3] 3R_8742521_SNP [dm6]	C	A	2.734e^-4	0.866	INTRON CG9801
3L	4352256	3L_4352256_INS [dm3] 3L_4352256_INS [dm6]	T	TT	2.742e^-4	0.866	INTRON Cip4
3L	4352259	3L_4352259_SNP [dm3] 3L_4352259_SNP [dm6]	T	C	2.742e^-4	0.866	INTRON Cip4
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	2.748e^-4	0.866	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
2L	3759080	2L_3759080_SNP [dm3] 2L_3759080_SNP [dm6]	T	C	2.751e^-4	0.866	SYNONYMOUS_CODING CG43707 UTR_5_PRIME CG43707 UPSTREAM CG43707
2R	19188869	2R_19188869_DEL [dm3] 2R_23301346_DEL [dm6]	CAACAATTGAATGCC...	C	2.753e^-4	0.866	INTERGENIC
3L	10866936	3L_10866936_SNP [dm3] 3L_10873836_SNP [dm6]	A	T	2.755e^-4	0.866	INTRON tna	TF binding site mE1_TFBS_cad
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	2.756e^-4	0.866	UPSTREAM Mlp60A INTERGENIC
3R	665326	3R_665326_SNP [dm3] 3R_4839604_SNP [dm6]	A	G	2.760e^-4	0.866	INTERGENIC
3L	6509518	3L_6509518_SNP [dm3] 3L_6516418_SNP [dm6]	T	C	2.762e^-4	0.866	INTRON sfl
X	199585	X_199585_SNP [dm3] X_305552_SNP [dm6]	G	A	2.764e^-4	0.866	INTRON CG3777	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2640311	2L_2640311_SNP [dm3] 2L_2640311_SNP [dm6]	A	T	2.771e^-4	0.866	INTERGENIC
2R	10175155	2R_10175155_SNP [dm3] 2R_14287650_SNP [dm6]	T	G	2.773e^-4	0.866	UPSTREAM Ih INTRON Ih
2L	5251706	2L_5251706_DEL [dm3] 2L_5251706_DEL [dm6]	CTA	C	2.779e^-4	0.866	INTRON tkv
3L	10876223	3L_10876223_SNP [dm3] 3L_10883123_SNP [dm6]	C	A	2.780e^-4	0.866	UPSTREAM CG6409 INTRON CG7949	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10666527	2R_10666527_SNP [dm3] 2R_14779022_SNP [dm6]	G	C	2.780e^-4	0.866	INTRON kn
2R	7182193	2R_7182193_SNP [dm3] 2R_11294688_SNP [dm6]	T	G	2.787e^-4	0.866	SYNONYMOUS_CODING CG42336 UPSTREAM CG18336	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4478059	X_4478059_SNP [dm3] X_4584026_SNP [dm6]	G	T	2.788e^-4	0.866	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18317660	2R_18317660_SNP [dm3] 2R_22430155_SNP [dm6]	C	A	2.791e^-4	0.866	DOWNSTREAM ppk12 INTERGENIC
3L	10836693	3L_10836693_SNP [dm3] 3L_10843593_SNP [dm6]	A	T	2.794e^-4	0.866	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	3909305	2L_3909305_SNP [dm3] 2L_3909305_SNP [dm6]	A	C	2.794e^-4	0.866	INTRON fred
3R	1972303	3R_1972303_SNP [dm3] 3R_6146581_SNP [dm6]	T	G	2.796e^-4	0.866	INTERGENIC
2L	10351338	2L_10351338_SNP [dm3] 2L_10351338_SNP [dm6]	T	C	2.806e^-4	0.866	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7913957	2L_7913957_SNP [dm3] 2L_7913957_SNP [dm6]	C	T	2.806e^-4	0.866	INTRON Snoo
2L	7913976	2L_7913976_SNP [dm3] 2L_7913976_SNP [dm6]	C	A	2.806e^-4	0.866	INTRON Snoo
3R	19075716	3R_19075716_SNP [dm3] 3R_23249994_SNP [dm6]	T	A	2.810e^-4	0.866	INTRON CG4449	TF binding site mE1_TFBS_HSA
2R	19727689	2R_19727689_SNP [dm3] 2R_23840166_SNP [dm6]	T	C	2.818e^-4	0.866	UPSTREAM CR44805 & 1 other DOWNSTREAM CG5549 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18554140	2R_18554140_SNP [dm3] 2R_22666635_SNP [dm6]	C	T	2.820e^-4	0.866	UPSTREAM CG30273 & 1 other DOWNSTREAM CG42867 EXON CR42868
3R	18128446	3R_18128446_SNP [dm3] 3R_22302724_SNP [dm6]	T	G	2.824e^-4	0.866	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6992728	2R_6992728_SNP [dm3] 2R_11105223_SNP [dm6]	C	A	2.828e^-4	0.866	INTRON luna	TF binding site BDTNP1_TFBS_dl
X	3969053	X_3969053_SNP [dm3] X_4075020_SNP [dm6]	C	G	2.837e^-4	0.866	UPSTREAM CG43689 INTERGENIC
3L	14796459	3L_14796459_SNP [dm3] 3L_14803359_SNP [dm6]	C	T	2.839e^-4	0.866	UTR_5_PRIME gnu
X	14348406	X_14348406_SNP [dm3] X_14454373_SNP [dm6]	T	G	2.848e^-4	0.866	INTRON dpr8
3L	5661237	3L_5661237_SNP [dm3] 3L_5668137_SNP [dm6]	T	C	2.849e^-4	0.866	SYNONYMOUS_CODING sif START_GAINED sif UTR_5_PRIME sif
3L	8890941	3L_8890941_SNP [dm3] 3L_8897841_SNP [dm6]	C	T	2.856e^-4	0.866	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6511493	3L_6511493_SNP [dm3] 3L_6518393_SNP [dm6]	G	C	2.856e^-4	0.866	INTRON sfl
2R	17144372	2R_17144372_SNP [dm3] 2R_21256867_SNP [dm6]	C	T	2.860e^-4	0.866	INTRON Rgk3
2R	12969515	2R_12969515_SNP [dm3] 2R_17082010_SNP [dm6]	C	T	2.861e^-4	0.866	INTRON CG30460
3L	4273153	3L_4273153_SNP [dm3] 3L_4273153_SNP [dm6]	C	G	2.862e^-4	0.866	INTRON CG1273
2L	20835158	2L_20835158_SNP [dm3] 2L_20835158_SNP [dm6]	G	C	2.864e^-4	0.866	SYNONYMOUS_CODING Oseg5
X	6753996	X_6753996_SNP [dm3] X_6859963_SNP [dm6]	C	A	2.868e^-4	0.866	UPSTREAM CR45531 INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	4965234	3R_4965234_SNP [dm3] 3R_9139512_SNP [dm6]	C	T	2.868e^-4	0.866	INTRON pum
3R	15037637	3R_15037637_SNP [dm3] 3R_19211915_SNP [dm6]	T	A	2.872e^-4	0.866	UPSTREAM cry INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9748476	3R_9748476_SNP [dm3] 3R_13922754_SNP [dm6]	G	T	2.873e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5507291	2L_5507291_SNP [dm3] 2L_5507291_SNP [dm6]	A	C	2.891e^-4	0.866	INTERGENIC
3L	11416987	3L_11416987_DEL [dm3] 3L_11423887_DEL [dm6]	ACGCCTTGATTGAAGTCTAT...	A	2.893e^-4	0.866	INTERGENIC
2L	9440562	2L_9440562_SNP [dm3] 2L_9440562_SNP [dm6]	G	T	2.895e^-4	0.866	SYNONYMOUS_CODING CG33723 INTRON numb
3R	9923796	3R_9923796_SNP [dm3] 3R_14098074_SNP [dm6]	A	T	2.899e^-4	0.866	UTR_5_PRIME CG9920
2L	12162826	2L_12162826_SNP [dm3] 2L_12162826_SNP [dm6]	T	C	2.901e^-4	0.866	SYNONYMOUS_CODING CG31760 DOWNSTREAM CG31861
X	16832843	X_16832843_SNP [dm3] X_16938810_SNP [dm6]	C	T	2.911e^-4	0.866	SYNONYMOUS_CODING wus DOWNSTREAM CG4928
X	14192299	X_14192299_SNP [dm3] X_14298266_SNP [dm6]	T	G	2.912e^-4	0.866	INTERGENIC
3L	12039607	3L_12039607_SNP [dm3] 3L_12046507_SNP [dm6]	T	A	2.916e^-4	0.866	INTRON rols
3L	6748350	3L_6748350_SNP [dm3] 3L_6755250_SNP [dm6]	T	A	2.917e^-4	0.866	INTRON CG10103
X	11184501	X_11184501_SNP [dm3] X_11290468_SNP [dm6]	C	G	2.924e^-4	0.866	INTRON CG44422
3R	26279927	3R_26279927_SNP [dm3] 3R_30454205_SNP [dm6]	A	G	2.929e^-4	0.866	UPSTREAM aralar1 INTRON aralar1
3L	13653973	3L_13653973_SNP [dm3] 3L_13660873_SNP [dm6]	A	T	2.935e^-4	0.866	INTRON bru-3
3L	5992567	3L_5992567_SNP [dm3] 3L_5999467_SNP [dm6]	C	A	2.940e^-4	0.866	INTRON PVRAP
2R	19736536	2R_19736536_SNP [dm3] 2R_23849013_SNP [dm6]	C	T	2.946e^-4	0.866	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736538	2R_19736538_SNP [dm3] 2R_23849015_SNP [dm6]	A	T	2.946e^-4	0.866	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19736539	2R_19736539_SNP [dm3] 2R_23849016_SNP [dm6]	T	A	2.946e^-4	0.866	DOWNSTREAM eIF6 INTRON ytr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3970338	X_3970338_INS [dm3] X_4076305_INS [dm6]	A	AA	2.949e^-4	0.866	UTR_5_PRIME CG43689
2L	8301891	2L_8301891_SNP [dm3] 2L_8301891_SNP [dm6]	C	G	2.967e^-4	0.866	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16718928	2R_16718928_SNP [dm3] 2R_20831423_SNP [dm6]	C	T	2.971e^-4	0.866	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11121242	3L_11121242_SNP [dm3] 3L_11128142_SNP [dm6]	C	T	2.972e^-4	0.866	INTRON CG42575
3L	10631256	3L_10631256_SNP [dm3] 3L_10638156_SNP [dm6]	C	G	2.988e^-4	0.866	START_GAINED CG8009 UTR_5_PRIME CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17683325	2R_17683325_SNP [dm3] 2R_21795820_SNP [dm6]	T	C	2.995e^-4	0.866	UPSTREAM CG34204 INTERGENIC
2L	14533965	2L_14533965_SNP [dm3] 2L_14533965_SNP [dm6]	A	T	2.995e^-4	0.866	UPSTREAM CR44852 INTERGENIC
3L	8662126	3L_8662126_INS [dm3] 3L_8669026_INS [dm6]	C	CT	2.999e^-4	0.866	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11849218	2R_11849218_SNP [dm3] 2R_15961713_SNP [dm6]	A	T	3.002e^-4	0.866	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5778736	3L_5778736_SNP [dm3] 3L_5785636_SNP [dm6]	A	C	3.012e^-4	0.866	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
3L	6958029	3L_6958029_SNP [dm3] 3L_6964929_SNP [dm6]	C	A	3.018e^-4	0.866	UPSTREAM sgl DOWNSTREAM CG10064 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	10175157	2R_10175157_SNP [dm3] 2R_14287652_SNP [dm6]	A	G	3.024e^-4	0.866	UPSTREAM Ih INTRON Ih
3R	16842500	3R_16842500_SNP [dm3] 3R_21016778_SNP [dm6]	T	C	3.027e^-4	0.866	UTR_3_PRIME CG5697 UPSTREAM Rlip	TF binding site mE1_TFBS_cad
2L	13732742	2L_13732742_SNP [dm3] 2L_13732742_SNP [dm6]	T	C	3.033e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9166199	2L_9166199_SNP [dm3] 2L_9166199_SNP [dm6]	A	G	3.038e^-4	0.866	UPSTREAM tai DOWNSTREAM CG13108 INTRON CG9586	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8365441	3L_8365441_SNP [dm3] 3L_8372341_SNP [dm6]	C	T	3.039e^-4	0.866	UPSTREAM ImpE1 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	9453196	2R_9453196_SNP [dm3] 2R_13565691_SNP [dm6]	T	C	3.048e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	4288941	3L_4288941_SNP [dm3] 3L_4288941_SNP [dm6]	C	A	3.053e^-4	0.866	UTR_5_PRIME Hexo1 UPSTREAM Hexo1 DOWNSTREAM TfIIEbeta INTRON Hexo1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9774657	2L_9774657_SNP [dm3] 2L_9774657_SNP [dm6]	T	C	3.062e^-4	0.866	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15103091	2L_15103091_SNP [dm3] 2L_15103091_SNP [dm6]	A	G	3.063e^-4	0.866	INTERGENIC
2L	19289474	2L_19289474_SNP [dm3] 2L_19289474_SNP [dm6]	T	A	3.069e^-4	0.866	INTERGENIC
3R	9924676	3R_9924676_SNP [dm3] 3R_14098954_SNP [dm6]	G	A	3.075e^-4	0.866	UPSTREAM CG9920 DOWNSTREAM PK1-R INTERGENIC
2R	16615607	2R_16615607_SNP [dm3] 2R_20728102_SNP [dm6]	G	T	3.080e^-4	0.866	SYNONYMOUS_CODING CG13442 INTRON dpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5538037	2R_5538037_SNP [dm3] 2R_9650532_SNP [dm6]	C	A	3.088e^-4	0.866	INTRON Mmp2
2L	11871930	2L_11871930_SNP [dm3] 2L_11871930_SNP [dm6]	C	T	3.106e^-4	0.866	INTRON Pde1c
2R	1811261	2R_1811261_SNP [dm3] 2R_5923756_SNP [dm6]	T	A	3.110e^-4	0.866	INTRON CG43366	transposable element FlyBase
2R	5137958	2R_5137958_SNP [dm3] 2R_9250453_SNP [dm6]	A	T	3.117e^-4	0.866	INTERGENIC
3L	6488483	3L_6488483_SNP [dm3] 3L_6495383_SNP [dm6]	G	A	3.133e^-4	0.866	UPSTREAM sfl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
2R	15491377	2R_15491377_SNP [dm3] 2R_19603872_SNP [dm6]	G	A	3.137e^-4	0.866	DOWNSTREAM CR44474 INTRON sm EXON CR44473
3R	16916902	3R_16916902_SNP [dm3] 3R_21091180_SNP [dm6]	A	T	3.137e^-4	0.866	INTRON RhoGAP93B & 1 other
X	3357901	X_3357901_SNP [dm3] X_3463868_SNP [dm6]	G	A	3.142e^-4	0.866	INTRON CR44999 & 1 other
3R	20197554	3R_20197554_SNP [dm3] 3R_24371832_SNP [dm6]	G	A	3.148e^-4	0.866	NON_SYNONYMOUS_CODING CG17782	TF binding site mE1_TFBS_chinmo
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	3.149e^-4	0.866	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	10806666	2L_10806666_SNP [dm3] 2L_10806666_SNP [dm6]	A	T	3.151e^-4	0.866	SYNONYMOUS_CODING Nos UTR_3_PRIME Nos	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13832291	3R_13832291_SNP [dm3] 3R_18006569_SNP [dm6]	G	A	3.161e^-4	0.866	INTRON cpo
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	3.162e^-4	0.866	DOWNSTREAM CG14476 INTERGENIC
X	4734626	X_4734626_SNP [dm3] X_4840593_SNP [dm6]	C	A	3.163e^-4	0.866	UPSTREAM CG42594 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10863972	2R_10863972_SNP [dm3] 2R_14976467_SNP [dm6]	T	G	3.163e^-4	0.866	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14639056	3L_14639056_SNP [dm3] 3L_14645956_SNP [dm6]	C	G	3.166e^-4	0.866	INTRON dlp
3L	13777370	3L_13777370_SNP [dm3] 3L_13784270_SNP [dm6]	A	G	3.170e^-4	0.866	INTRON bru-3
3R	26261897	3R_26261897_SNP [dm3] 3R_30436175_SNP [dm6]	C	G	3.173e^-4	0.866	INTRON CG15537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17457206	3L_17457206_SNP [dm3] 3L_17464106_SNP [dm6]	G	C	3.173e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	18686916	X_18686916_SNP [dm3] X_18792883_SNP [dm6]	G	A	3.182e^-4	0.866	UTR_3_PRIME Atg101 INTRON Pk17E
2L	20372082	2L_20372082_SNP [dm3] 2L_20372082_SNP [dm6]	C	T	3.189e^-4	0.866	DOWNSTREAM Ugt37a1 INTERGENIC
3L	7456421	3L_7456421_SNP [dm3] 3L_7463321_SNP [dm6]	A	G	3.201e^-4	0.866	INTERGENIC
2R	11849161	2R_11849161_SNP [dm3] 2R_15961656_SNP [dm6]	G	A	3.202e^-4	0.866	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8301543	2L_8301543_SNP [dm3] 2L_8301543_SNP [dm6]	T	C	3.204e^-4	0.866	SYNONYMOUS_CODING wol UPSTREAM Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	15073934	2R_15073934_SNP [dm3] 2R_19186429_SNP [dm6]	A	G	3.207e^-4	0.866	INTRON hppy
3L	14064992	3L_14064992_SNP [dm3] 3L_14071892_SNP [dm6]	T	A	3.223e^-4	0.866	UTR_5_PRIME Pex1 DOWNSTREAM CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11119952	3L_11119952_SNP [dm3] 3L_11126852_SNP [dm6]	G	C	3.223e^-4	0.866	INTRON CG42575	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	21088531	2L_21088531_SNP [dm3] 2L_21088531_SNP [dm6]	G	A	3.224e^-4	0.866	UPSTREAM CG9259 INTRON ppk13
2R	5106969	2R_5106969_SNP [dm3] 2R_9219464_SNP [dm6]	G	A	3.229e^-4	0.866	INTERGENIC
3R	26279912	3R_26279912_SNP [dm3] 3R_30454190_SNP [dm6]	C	T	3.229e^-4	0.866	UPSTREAM aralar1 INTRON aralar1
3R	15298476	3R_15298476_SNP [dm3] 3R_19472754_SNP [dm6]	T	C	3.231e^-4	0.866	INTRON Dys	TF binding site mE1_TFBS_cad
2L	9964913	2L_9964913_SNP [dm3] 2L_9964913_SNP [dm6]	G	T	3.232e^-4	0.866	UPSTREAM CG5850 INTRON Dref	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16591323	2L_16591323_SNP [dm3] 2L_16591323_SNP [dm6]	C	T	3.235e^-4	0.866	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	6085501	2L_6085501_SNP [dm3] 2L_6085501_SNP [dm6]	A	C	3.243e^-4	0.866	INTRON Kr-h1	TF binding site mE1_TFBS_inv
2R	11799880	2R_11799880_SNP [dm3] 2R_15912375_SNP [dm6]	A	G	3.249e^-4	0.866	INTRON sli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6086077	2L_6086077_SNP [dm3] 2L_6086077_SNP [dm6]	A	T	3.256e^-4	0.866	INTRON Kr-h1	TF binding site mE1_TFBS_inv
2L	8301927	2L_8301927_SNP [dm3] 2L_8301927_SNP [dm6]	T	C	3.257e^-4	0.866	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8301928	2L_8301928_SNP [dm3] 2L_8301928_SNP [dm6]	T	C	3.257e^-4	0.866	SPLICE_SITE_REGION wol UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11134825	3L_11134825_SNP [dm3] 3L_11141725_SNP [dm6]	T	G	3.305e^-4	0.866	INTRON CG32082
3L	3705652	3L_3705652_SNP [dm3] 3L_3705652_SNP [dm6]	G	A	3.307e^-4	0.866	INTERGENIC
3L	9198932	3L_9198932_SNP [dm3] 3L_9205832_SNP [dm6]	A	C	3.311e^-4	0.866	INTRON Slc45-1	TF binding site mE1_TFBS_cad
2L	6935244	2L_6935244_SNP [dm3] 2L_6935244_SNP [dm6]	A	G	3.313e^-4	0.866	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
2L	10828283	2L_10828283_SNP [dm3] 2L_10828283_SNP [dm6]	A	G	3.314e^-4	0.866	INTRON Nos
2R	11178822	2R_11178822_SNP [dm3] 2R_15291317_SNP [dm6]	G	A	3.316e^-4	0.866	UPSTREAM Trpm INTRON Trpm
2L	9458769	2L_9458769_SNP [dm3] 2L_9458769_SNP [dm6]	G	A	3.322e^-4	0.866	INTRON numb
X	14192314	X_14192314_MNP [dm3] X_14298281_MNP [dm6]	CGT	GTA	3.330e^-4	0.866	INTERGENIC
2R	14497053	2R_14497053_SNP [dm3] 2R_18609548_SNP [dm6]	C	G	3.350e^-4	0.866	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi
X	22231401	X_22231401_SNP [dm3] X_22829565_SNP [dm6]	T	A	3.353e^-4	0.866	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	5329126	3L_5329126_SNP [dm3] 3L_5336026_SNP [dm6]	A	C	3.353e^-4	0.866	DOWNSTREAM CR45742 INTERGENIC
2L	14661405	2L_14661405_SNP [dm3] 2L_14661405_SNP [dm6]	C	T	3.354e^-4	0.866	INTRON osp
2L	3848125	2L_3848125_INS [dm3] 2L_3848125_INS [dm6]	A	AAG	3.354e^-4	0.866	INTERGENIC
3L	5385788	3L_5385788_SNP [dm3] 3L_5392688_SNP [dm6]	T	C	3.355e^-4	0.866	INTERGENIC
2R	19186413	2R_19186413_DEL [dm3] 2R_23298890_DEL [dm6]	TCGTACCT	T	3.357e^-4	0.866	INTERGENIC
3R	17381198	3R_17381198_SNP [dm3] 3R_21555476_SNP [dm6]	A	G	3.365e^-4	0.866	INTRON slou
3R	4965152	3R_4965152_SNP [dm3] 3R_9139430_SNP [dm6]	T	A	3.369e^-4	0.866	INTRON pum
2R	11632433	2R_11632433_SNP [dm3] 2R_15744928_SNP [dm6]	T	A	3.376e^-4	0.866	INTRON CG30089	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6511185	3L_6511185_SNP [dm3] 3L_6518085_SNP [dm6]	G	C	3.378e^-4	0.866	INTRON sfl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19728331	2R_19728331_SNP [dm3] 2R_23840808_SNP [dm6]	C	T	3.381e^-4	0.866	UPSTREAM snoRNA:Psi18S-176 DOWNSTREAM CG5549 & 2 others INTERGENIC
2L	2419507	2L_2419507_SNP [dm3] 2L_2419507_SNP [dm6]	A	G	3.383e^-4	0.866	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419508	2L_2419508_DEL [dm3] 2L_2419508_DEL [dm6]	AC	A	3.383e^-4	0.866	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12124312	3L_12124312_SNP [dm3] 3L_12131212_SNP [dm6]	T	C	3.384e^-4	0.866	SYNONYMOUS_CODING Lsp2 UPSTREAM CG11534	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	10740544	2R_10740544_SNP [dm3] 2R_14853039_SNP [dm6]	G	A	3.391e^-4	0.866	SYNONYMOUS_CODING Ercc1 UPSTREAM SMC2 DOWNSTREAM Ciao1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17648368	2R_17648368_SNP [dm3] 2R_21760863_SNP [dm6]	C	A	3.393e^-4	0.866	INTERGENIC
2L	2419480	2L_2419480_SNP [dm3] 2L_2419480_SNP [dm6]	G	A	3.395e^-4	0.866	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	10351358	2L_10351358_SNP [dm3] 2L_10351358_SNP [dm6]	A	C	3.396e^-4	0.866	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	3.398e^-4	0.866	INTRON CG42260
3L	12039581	3L_12039581_SNP [dm3] 3L_12046481_SNP [dm6]	T	C	3.398e^-4	0.866	INTRON rols
2R	13163493	2R_13163493_SNP [dm3] 2R_17275988_SNP [dm6]	A	G	3.403e^-4	0.866	SYNONYMOUS_CODING mbl	TF binding site mE1_TFBS_HSA
3L	11236514	3L_11236514_SNP [dm3] 3L_11243414_SNP [dm6]	G	A	3.407e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9969903	3L_9969903_DEL [dm3] 3L_9976803_DEL [dm6]	CTTTCTT	C	3.409e^-4	0.866	INTRON dpr6
3L	415404	3L_415404_SNP [dm3] 3L_415404_SNP [dm6]	C	G	3.412e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs
3R	25657716	3R_25657716_SNP [dm3] 3R_29831994_SNP [dm6]	C	T	3.414e^-4	0.866	SYNONYMOUS_CODING Atg16
3L	3026879	3L_3026879_SNP [dm3] 3L_3026879_SNP [dm6]	T	G	3.416e^-4	0.866	UPSTREAM aly INTERGENIC
2L	5251718	2L_5251718_SNP [dm3] 2L_5251718_SNP [dm6]	T	A	3.418e^-4	0.866	INTRON tkv
X	15970800	X_15970800_SNP [dm3] X_16076767_SNP [dm6]	C	T	3.421e^-4	0.866	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA
3L	6496530	3L_6496530_SNP [dm3] 3L_6503430_SNP [dm6]	A	G	3.427e^-4	0.866	INTRON sfl	TF binding site BDTNP1_TFBS_dl
X	20900406	X_20900406_SNP [dm3] X_21029379_SNP [dm6]	C	T	3.439e^-4	0.866	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
2R	16330076	2R_16330076_SNP [dm3] 2R_20442571_SNP [dm6]	G	T	3.439e^-4	0.866	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3L	8576116	3L_8576116_SNP [dm3] 3L_8583016_SNP [dm6]	C	G	3.439e^-4	0.866	UPSTREAM CG43078 INTRON CG43078
2L	6042228	2L_6042228_SNP [dm3] 2L_6042228_SNP [dm6]	C	G	3.440e^-4	0.866	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6042235	2L_6042235_SNP [dm3] 2L_6042235_SNP [dm6]	A	G	3.440e^-4	0.866	SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7913959	2L_7913959_SNP [dm3] 2L_7913959_SNP [dm6]	C	T	3.445e^-4	0.866	INTRON Snoo
X	4478035	X_4478035_SNP [dm3] X_4584002_SNP [dm6]	T	A	3.446e^-4	0.866	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10984124	2L_10984124_SNP [dm3] 2L_10984124_SNP [dm6]	T	C	3.446e^-4	0.866	INTRON piwi
X	22231406	X_22231406_SNP [dm3] X_22829570_SNP [dm6]	C	A	3.460e^-4	0.866	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	9198897	3L_9198897_SNP [dm3] 3L_9205797_SNP [dm6]	G	A	3.461e^-4	0.866	INTRON Slc45-1	TF binding site mE1_TFBS_cad
2R	16946718	2R_16946718_SNP [dm3] 2R_21059213_SNP [dm6]	G	A	3.472e^-4	0.866	UTR_3_PRIME cpa DOWNSTREAM CG15653
3R	13591016	3R_13591016_SNP [dm3] 3R_17765294_SNP [dm6]	T	A	3.478e^-4	0.866	INTERGENIC
X	8901229	X_8901229_INS [dm3] X_9007196_INS [dm6]	T	TCA	3.485e^-4	0.866	INTRON rdgA & 1 other
X	8901236	X_8901236_DEL [dm3] X_9007203_DEL [dm6]	AA	A	3.485e^-4	0.866	INTRON rdgA & 1 other
X	4831371	X_4831371_SNP [dm3] X_4937338_SNP [dm6]	G	A	3.489e^-4	0.866	INTRON CG44774	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8901175	X_8901175_DEL [dm3] X_9007142_DEL [dm6]	CAACAAA	G	3.503e^-4	0.866	INTRON rdgA & 1 other
2L	9881399	2L_9881399_SNP [dm3] 2L_9881399_SNP [dm6]	T	C	3.504e^-4	0.866	INTRON nAChRalpha6
2R	19107420	2R_19107420_SNP [dm3] 2R_23219897_SNP [dm6]	A	G	3.510e^-4	0.866	INTERGENIC
3L	9139329	3L_9139329_SNP [dm3] 3L_9146229_SNP [dm6]	T	C	3.521e^-4	0.866	UTR_3_PRIME Rdl DOWNSTREAM nwk	TF binding site BDTNP1_TFBS_twi
3R	4965150	3R_4965150_SNP [dm3] 3R_9139428_SNP [dm6]	A	G	3.521e^-4	0.866	INTRON pum
2R	13400978	2R_13400978_SNP [dm3] 2R_17513473_SNP [dm6]	G	A	3.527e^-4	0.866	SYNONYMOUS_CODING CG4847 UPSTREAM CG4853	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15815824	3R_15815824_SNP [dm3] 3R_19990102_SNP [dm6]	A	C	3.530e^-4	0.866	INTRON Hs6st
X	20001040	X_20001040_SNP [dm3] X_20107007_SNP [dm6]	A	G	3.533e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12270239	2R_12270239_DEL [dm3] 2R_16382734_DEL [dm6]	AAG	A	3.540e^-4	0.866	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
2L	8907392	2L_8907392_SNP [dm3] 2L_8907392_SNP [dm6]	A	G	3.541e^-4	0.866	INTRON CG34398
3L	9204530	3L_9204530_SNP [dm3] 3L_9211430_SNP [dm6]	A	T	3.542e^-4	0.866	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	3.547e^-4	0.866	SYNONYMOUS_CODING SP1173
X	13821955	X_13821955_SNP [dm3] X_13927922_SNP [dm6]	C	T	3.549e^-4	0.866	INTRON mamo
2L	10268048	2L_10268048_SNP [dm3] 2L_10268048_SNP [dm6]	G	T	3.549e^-4	0.866	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
3L	6966904	3L_6966904_SNP [dm3] 3L_6973804_SNP [dm6]	T	C	3.554e^-4	0.866	INTRON Galphai	TF binding site mE1_TFBS_sens
3L	3557421	3L_3557421_SNP [dm3] 3L_3557421_SNP [dm6]	C	A	3.563e^-4	0.866	INTRON Eip63E
2L	5165853	2L_5165853_SNP [dm3] 2L_5165853_SNP [dm6]	C	T	3.564e^-4	0.866	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	20382932	2L_20382932_SNP [dm3] 2L_20382932_SNP [dm6]	A	T	3.566e^-4	0.866	UPSTREAM CG16798 INTERGENIC
3L	10034345	3L_10034345_SNP [dm3] 3L_10041245_SNP [dm6]	A	G	3.569e^-4	0.866	UTR_3_PRIME dpr6 INTRON dpr6
X	12378561	X_12378561_DEL [dm3] X_12484528_DEL [dm6]	AA	A	3.569e^-4	0.866	INTERGENIC
2R	17964925	2R_17964925_SNP [dm3] 2R_22077420_SNP [dm6]	A	G	3.573e^-4	0.866	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20496261	2L_20496261_SNP [dm3] 2L_20496261_SNP [dm6]	T	A	3.578e^-4	0.866	DOWNSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4795903	2L_4795903_SNP [dm3] 2L_4795903_SNP [dm6]	C	T	3.597e^-4	0.866	SYNONYMOUS_CODING CG3294 DOWNSTREAM Clect27
3L	2766057	3L_2766057_SNP [dm3] 3L_2766057_SNP [dm6]	C	A	3.601e^-4	0.866	UPSTREAM CG1240 INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	6966913	3L_6966913_SNP [dm3] 3L_6973813_SNP [dm6]	A	C	3.607e^-4	0.866	INTRON Galphai	TF binding site mE1_TFBS_sens
2R	19727691	2R_19727691_SNP [dm3] 2R_23840168_SNP [dm6]	T	C	3.640e^-4	0.866	UPSTREAM CR44805 & 1 other DOWNSTREAM CG5549 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14898468	2R_14898468_SNP [dm3] 2R_19010963_SNP [dm6]	C	T	3.654e^-4	0.866	INTERGENIC
3L	2765849	3L_2765849_SNP [dm3] 3L_2765849_SNP [dm6]	G	A	3.661e^-4	0.866	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
3L	4131709	3L_4131709_SNP [dm3] 3L_4131709_SNP [dm6]	T	C	3.676e^-4	0.866	INTRON ens
2R	12473095	2R_12473095_SNP [dm3] 2R_16585590_SNP [dm6]	G	A	3.677e^-4	0.866	UPSTREAM RpLP2 DOWNSTREAM Cdk4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2661240	3L_2661240_SNP [dm3] 3L_2661240_SNP [dm6]	G	T	3.679e^-4	0.866	SYNONYMOUS_CODING CG33233 UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife
3R	18017511	3R_18017511_SNP [dm3] 3R_22191789_SNP [dm6]	C	T	3.684e^-4	0.866	INTRON SKIP
2L	9773977	2L_9773977_SNP [dm3] 2L_9773977_SNP [dm6]	T	C	3.685e^-4	0.866	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2L	7596325	2L_7596325_INS [dm3] 2L_7596325_INS [dm6]	G	GACAAAG	3.685e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	541165	2L_541165_SNP [dm3] 2L_541165_SNP [dm6]	A	G	3.688e^-4	0.866	UTR_3_PRIME lwr DOWNSTREAM lwr & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6497290	3L_6497290_SNP [dm3] 3L_6504190_SNP [dm6]	C	A	3.689e^-4	0.866	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1568540	3R_1568540_SNP [dm3] 3R_5742818_SNP [dm6]	C	T	3.689e^-4	0.866	UTR_5_PRIME Madm UPSTREAM Sym	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1744898	2L_1744898_INS [dm3] 2L_1744898_INS [dm6]	T	TAATGGCCGGGTCG...	3.704e^-4	0.866	INTRON CG17646
3R	23882032	3R_23882032_SNP [dm3] 3R_28056310_SNP [dm6]	G	T	3.707e^-4	0.866	INTRON CG34362
3L	7123999	3L_7123999_SNP [dm3] 3L_7130899_SNP [dm6]	C	G	3.708e^-4	0.866	SPLICE_SITE_REGION CG8628 UTR_5_PRIME CG8628 UPSTREAM CG8628 & 1 other
3L	6502745	3L_6502745_SNP [dm3] 3L_6509645_SNP [dm6]	T	G	3.717e^-4	0.866	INTRON sfl
3L	5305809	3L_5305809_SNP [dm3] 3L_5312709_SNP [dm6]	G	A	3.719e^-4	0.866	INTERGENIC
2R	11634904	2R_11634904_SNP [dm3] 2R_15747399_SNP [dm6]	T	C	3.722e^-4	0.866	INTRON CG30089	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	3238535	2L_3238535_SNP [dm3] 2L_3238535_SNP [dm6]	G	T	3.727e^-4	0.866	INTERGENIC
2R	12950788	2R_12950788_SNP [dm3] 2R_17063283_SNP [dm6]	A	C	3.729e^-4	0.866	NON_SYNONYMOUS_CODING CG6967 UPSTREAM CG8950	TF binding site mE1_TFBS_sens
2L	6046277	2L_6046277_SNP [dm3] 2L_6046277_SNP [dm6]	A	G	3.741e^-4	0.866	UPSTREAM ade2 & 1 other DOWNSTREAM slmo & 1 other INTERGENIC
2R	10666533	2R_10666533_SNP [dm3] 2R_14779028_SNP [dm6]	G	A	3.753e^-4	0.866	INTRON kn
3L	11388765	3L_11388765_SNP [dm3] 3L_11395665_SNP [dm6]	T	C	3.754e^-4	0.866	UTR_3_PRIME CG11726
3L	8611629	3L_8611629_SNP [dm3] 3L_8618529_SNP [dm6]	T	A	3.755e^-4	0.866	INTRON S-Lap1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10175246	2R_10175246_INS [dm3] 2R_14287741_INS [dm6]	A	AGTCAATAGCACAACTA...	3.762e^-4	0.866	UPSTREAM Ih INTRON Ih
3L	12318303	3L_12318303_SNP [dm3] 3L_12325203_SNP [dm6]	C	T	3.769e^-4	0.866	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4912088	3R_4912088_SNP [dm3] 3R_9086366_SNP [dm6]	A	C	3.773e^-4	0.866	INTRON pum
X	3925549	X_3925549_SNP [dm3] X_4031516_SNP [dm6]	C	G	3.777e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6795863	2L_6795863_SNP [dm3] 2L_6795863_SNP [dm6]	G	T	3.782e^-4	0.866	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_Trl
3L	11121234	3L_11121234_SNP [dm3] 3L_11128134_SNP [dm6]	G	T	3.782e^-4	0.866	INTRON CG42575
3L	18269216	3L_18269216_SNP [dm3] 3L_18276116_SNP [dm6]	T	C	3.785e^-4	0.866	INTERGENIC
3L	18874759	3L_18874759_SNP [dm3] 3L_18881659_SNP [dm6]	G	A	3.789e^-4	0.866	INTRON CG3961
X	18931718	X_18931718_SNP [dm3] X_19037685_SNP [dm6]	G	T	3.793e^-4	0.866	INTERGENIC
X	18927939	X_18927939_SNP [dm3] X_19033906_SNP [dm6]	T	C	3.798e^-4	0.866	INTERGENIC
3R	13634711	3R_13634711_INS [dm3] 3R_17808989_INS [dm6]	A	ATAGGGATAAATAAA...	3.804e^-4	0.866	DOWNSTREAM CG18012 INTRON CG7357	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21253596	X_21253596_SNP [dm3] X_21382569_SNP [dm6]	C	T	3.805e^-4	0.866	SYNONYMOUS_CODING slgA UTR_5_PRIME slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10946352	2R_10946352_SNP [dm3] 2R_15058847_SNP [dm6]	A	G	3.805e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16731789	2L_16731789_SNP [dm3] 2L_16731789_SNP [dm6]	G	A	3.806e^-4	0.866	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	5663900	2R_5663900_SNP [dm3] 2R_9776395_SNP [dm6]	C	A	3.806e^-4	0.866	DOWNSTREAM CR44207 INTRON CG1688
2L	3233493	2L_3233493_SNP [dm3] 2L_3233493_SNP [dm6]	T	A	3.808e^-4	0.866	INTERGENIC
2R	17964049	2R_17964049_SNP [dm3] 2R_22076544_SNP [dm6]	C	A	3.809e^-4	0.866	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18933508	X_18933508_SNP [dm3] X_19039475_SNP [dm6]	G	C	3.811e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	9785849	3L_9785849_SNP [dm3] 3L_9792749_SNP [dm6]	C	T	3.815e^-4	0.866	SYNONYMOUS_CODING Zasp67
2R	12951832	2R_12951832_SNP [dm3] 2R_17064327_SNP [dm6]	A	C	3.816e^-4	0.866	SYNONYMOUS_CODING CG6967
X	21253559	X_21253559_SNP [dm3] X_21382532_SNP [dm6]	T	C	3.817e^-4	0.866	INTRON slgA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10300732	3L_10300732_SNP [dm3] 3L_10307632_SNP [dm6]	A	G	3.829e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	21921434	2L_21921434_DEL [dm3] 2L_21921434_DEL [dm6]	GGGTGGTAGGG...	G	3.831e^-4	0.866	INTERGENIC
X	14192261	X_14192261_SNP [dm3] X_14298228_SNP [dm6]	T	A	3.831e^-4	0.866	INTERGENIC
2L	18395779	2L_18395779_SNP [dm3] 2L_18395779_SNP [dm6]	T	C	3.831e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	2772438	3L_2772438_SNP [dm3] 3L_2772438_SNP [dm6]	C	T	3.840e^-4	0.866	UPSTREAM CG9977 DOWNSTREAM CG12093 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13727094	3R_13727094_SNP [dm3] 3R_17901372_SNP [dm6]	G	T	3.840e^-4	0.866	INTRON Rim
X	8004979	X_8004979_SNP [dm3] X_8110946_SNP [dm6]	G	T	3.840e^-4	0.866	INTRON Gclc
X	8901226	X_8901226_INS [dm3] X_9007193_INS [dm6]	G	GCAAA	3.841e^-4	0.866	INTRON rdgA & 1 other
2R	4915954	2R_4915954_SNP [dm3] 2R_9028449_SNP [dm6]	A	T	3.841e^-4	0.866	INTRON CG8170
3L	12170233	3L_12170233_SNP [dm3] 3L_12177133_SNP [dm6]	A	G	3.847e^-4	0.866	UPSTREAM CAH2 INTERGENIC
3L	9396621	3L_9396621_SNP [dm3] 3L_9403521_SNP [dm6]	A	G	3.850e^-4	0.866	INTERGENIC
3L	23075274	3L_23075274_DEL [dm3] 3L_23082174_DEL [dm6]	TAATTTTTGAGTAGAAAC...	T	3.851e^-4	0.866	INTERGENIC
2L	19727837	2L_19727837_SNP [dm3] 2L_19727837_SNP [dm6]	T	G	3.856e^-4	0.866	SYNONYMOUS_CODING Lar	TF binding site mE1_TFBS_chinmo
X	21336842	X_21336842_SNP [dm3] X_21465815_SNP [dm6]	A	C	3.864e^-4	0.866	INTERGENIC
2R	13435777	2R_13435777_INS [dm3] 2R_17548272_INS [dm6]	G	GCCTCTCGG	3.871e^-4	0.866	UTR_5_PRIME MESR4 UPSTREAM MESR4 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11821923	2L_11821923_SNP [dm3] 2L_11821923_SNP [dm6]	T	A	3.872e^-4	0.866	UPSTREAM Pde1c INTRON Pde1c
3L	16539784	3L_16539784_SNP [dm3] 3L_16546684_SNP [dm6]	A	T	3.874e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cnc
2L	20389944	2L_20389944_SNP [dm3] 2L_20389944_SNP [dm6]	A	T	3.875e^-4	0.866	INTRON CG10947	TF binding site mE1_TFBS_inv
2L	18669276	2L_18669276_SNP [dm3] 2L_18669276_SNP [dm6]	T	A	3.877e^-4	0.866	SYNONYMOUS_CODING CG43338	TF binding site mE1_TFBS_cad
2R	17963838	2R_17963838_DEL [dm3] 2R_22076333_DEL [dm6]	CAC	C	3.883e^-4	0.866	UTR_5_PRIME GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10016827	3R_10016827_SNP [dm3] 3R_14191105_SNP [dm6]	G	C	3.887e^-4	0.866	INTRON Dop1R1
3L	11336444	3L_11336444_INS [dm3] 3L_11343344_INS [dm6]	T	TGAGAATATTAATCTTT...	3.890e^-4	0.866	DOWNSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	11738058	2R_11738058_SNP [dm3] 2R_15850553_SNP [dm6]	A	G	3.891e^-4	0.866	INTRON tun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA
3L	10632128	3L_10632128_SNP [dm3] 3L_10639028_SNP [dm6]	A	C	3.895e^-4	0.866	UPSTREAM E_z_ & 1 other INTRON CG8009
2R	15868057	2R_15868057_SNP [dm3] 2R_19980552_SNP [dm6]	G	A	3.898e^-4	0.866	UTR_5_PRIME CG8654 UPSTREAM CG8654 INTRON CG8654
2R	3779323	2R_3779323_INS [dm3] 2R_7891818_INS [dm6]	G	GAATGAACGTCTGCG...	3.899e^-4	0.866	INTRON CG30377
2L	4001329	2L_4001329_SNP [dm3] 2L_4001329_SNP [dm6]	G	A	3.904e^-4	0.866	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1668078	2L_1668078_SNP [dm3] 2L_1668078_SNP [dm6]	C	A	3.905e^-4	0.866	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
3L	4487080	3L_4487080_SNP [dm3] 3L_4487080_SNP [dm6]	T	A	3.906e^-4	0.866	SYNONYMOUS_CODING CG13722
2R	16131974	2R_16131974_SNP [dm3] 2R_20244469_SNP [dm6]	C	A	3.907e^-4	0.866	INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	6721518	2R_6721518_SNP [dm3] 2R_10834013_SNP [dm6]	C	T	3.958e^-4	0.866	INTRON CG12344
2R	10175198	2R_10175198_INS [dm3] 2R_14287693_INS [dm6]	T	TTTAAT	3.969e^-4	0.866	UPSTREAM Ih INTRON Ih
2R	17964202	2R_17964202_SNP [dm3] 2R_22076697_SNP [dm6]	T	A	3.970e^-4	0.866	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7456493	3L_7456493_SNP [dm3] 3L_7463393_SNP [dm6]	C	T	3.970e^-4	0.866	INTERGENIC
X	7913235	X_7913235_INS [dm3] X_8019202_INS [dm6]	A	AA	3.980e^-4	0.866	DOWNSTREAM CG15333 INTRON Tbh
3L	5765685	3L_5765685_SNP [dm3] 3L_5772585_SNP [dm6]	A	G	3.982e^-4	0.866	SYNONYMOUS_CODING scny	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	7052142	2L_7052142_SNP [dm3] 2L_7052142_SNP [dm6]	G	C	3.984e^-4	0.866	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6041778	2L_6041778_SNP [dm3] 2L_6041778_SNP [dm6]	C	T	3.994e^-4	0.866	NON_SYNONYMOUS_CODING ade2 DOWNSTREAM CG31643	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4973422	3R_4973422_SNP [dm3] 3R_9147700_SNP [dm6]	A	G	3.999e^-4	0.866	INTRON pum
3L	9204659	3L_9204659_SNP [dm3] 3L_9211559_SNP [dm6]	C	T	4.000e^-4	0.866	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	10175160	2R_10175160_SNP [dm3] 2R_14287655_SNP [dm6]	C	A	4.009e^-4	0.866	UPSTREAM Ih INTRON Ih
2L	18584998	2L_18584998_SNP [dm3] 2L_18584998_SNP [dm6]	A	G	4.015e^-4	0.866	INTRON Pde11
2R	6730912	2R_6730912_SNP [dm3] 2R_10843407_SNP [dm6]	C	T	4.019e^-4	0.866	SYNONYMOUS_CODING CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	12119971	2L_12119971_SNP [dm3] 2L_12119971_SNP [dm6]	G	A	4.023e^-4	0.866	INTRON CG17211
2R	9588173	2R_9588173_SNP [dm3] 2R_13700668_SNP [dm6]	A	T	4.024e^-4	0.866	INTRON fas
2L	9091485	2L_9091485_SNP [dm3] 2L_9091485_SNP [dm6]	T	A	4.028e^-4	0.866	INTERGENIC
2L	2419441	2L_2419441_SNP [dm3] 2L_2419441_SNP [dm6]	G	A	4.033e^-4	0.866	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	3557406	3L_3557406_SNP [dm3] 3L_3557406_SNP [dm6]	C	G	4.037e^-4	0.866	INTRON Eip63E
3R	9738831	3R_9738831_SNP [dm3] 3R_13913109_SNP [dm6]	C	T	4.045e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2887672	3L_2887672_SNP [dm3] 3L_2887672_SNP [dm6]	T	C	4.050e^-4	0.866	INTRON spz5
3L	840649	3L_840649_SNP [dm3] 3L_840649_SNP [dm6]	G	A	4.054e^-4	0.866	SYNONYMOUS_CODING CG13902 UPSTREAM Gr61a DOWNSTREAM CG13887	TF binding site mE1_TFBS_sens
3L	17686547	3L_17686547_SNP [dm3] 3L_17693447_SNP [dm6]	C	T	4.058e^-4	0.866	INTRON Ccn
2L	4795858	2L_4795858_SNP [dm3] 2L_4795858_SNP [dm6]	A	C	4.062e^-4	0.866	SYNONYMOUS_CODING CG3294 DOWNSTREAM Clect27
2L	15390549	2L_15390549_SNP [dm3] 2L_15390549_SNP [dm6]	T	A	4.071e^-4	0.866	INTERGENIC
3R	10495536	3R_10495536_SNP [dm3] 3R_14669814_SNP [dm6]	A	T	4.073e^-4	0.866	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15926650	2R_15926650_SNP [dm3] 2R_20039145_SNP [dm6]	G	T	4.074e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6948967	3L_6948967_SNP [dm3] 3L_6955867_SNP [dm6]	A	T	4.076e^-4	0.866	UTR_5_PRIME CG10077 UPSTREAM CG9948 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4952446	3L_4952446_SNP [dm3] 3L_4952446_SNP [dm6]	G	A	4.078e^-4	0.866	INTRON Con	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15384377	2R_15384377_SNP [dm3] 2R_19496872_SNP [dm6]	T	A	4.082e^-4	0.866	UPSTREAM CG15120 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
X	14192330	X_14192330_SNP [dm3] X_14298297_SNP [dm6]	G	A	4.083e^-4	0.866	INTERGENIC
3R	6010542	3R_6010542_SNP [dm3] 3R_10184820_SNP [dm6]	A	C	4.085e^-4	0.866	INTRON CG12814	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	12690797	3L_12690797_SNP [dm3] 3L_12697697_SNP [dm6]	G	A	4.089e^-4	0.866	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24136348	3R_24136348_SNP [dm3] 3R_28310626_SNP [dm6]	C	A	4.095e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	8817850	2L_8817850_SNP [dm3] 2L_8817850_SNP [dm6]	C	T	4.098e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	10631889	3L_10631889_SNP [dm3] 3L_10638789_SNP [dm6]	C	T	4.102e^-4	0.866	UPSTREAM E_z_ & 1 other INTRON CG8009
3L	6503489	3L_6503489_SNP [dm3] 3L_6510389_SNP [dm6]	C	A	4.116e^-4	0.866	INTRON sfl
2L	4795900	2L_4795900_SNP [dm3] 2L_4795900_SNP [dm6]	A	G	4.122e^-4	0.866	SYNONYMOUS_CODING CG3294 DOWNSTREAM Clect27
3L	5277556	3L_5277556_SNP [dm3] 3L_5284456_SNP [dm6]	C	G	4.126e^-4	0.866	INTERGENIC
3L	3974172	3L_3974172_DEL [dm3] 3L_3974172_DEL [dm6]	ACGA	A	4.128e^-4	0.866	DOWNSTREAM CG43915 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	14666267	2R_14666267_INS [dm3] 2R_18778762_INS [dm6]	T	CCAACGTGCGG...	4.130e^-4	0.866	INTERGENIC
3L	19184595	3L_19184595_SNP [dm3] 3L_19191495_SNP [dm6]	A	G	4.134e^-4	0.866	INTRON fz2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6711721	2R_6711721_SNP [dm3] 2R_10824216_SNP [dm6]	C	T	4.140e^-4	0.866	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	20197739	3R_20197739_SNP [dm3] 3R_24372017_SNP [dm6]	T	G	4.149e^-4	0.866	SYNONYMOUS_CODING CG17782	TF binding site mE1_TFBS_chinmo
X	18372466	X_18372466_INS [dm3] X_18478433_INS [dm6]	T	TGTGT	4.153e^-4	0.866	INTRON CG32547
2L	19961775	2L_19961775_INS [dm3] 2L_19961775_INS [dm6]	T	TT	4.172e^-4	0.866	UTR_3_PRIME CG13965 UPSTREAM CG34051 & 2 others
X	3539131	X_3539131_SNP [dm3] X_3645098_SNP [dm6]	C	T	4.173e^-4	0.866	INTRON AstA-R1
2R	16453350	2R_16453350_DEL [dm3] 2R_20565845_DEL [dm6]	ATATATTTA	A	4.173e^-4	0.866	INTRON qsm
X	21364580	X_21364580_SNP [dm3] X_21493553_SNP [dm6]	T	C	4.175e^-4	0.866	INTERGENIC
2R	10946644	2R_10946644_SNP [dm3] 2R_15059139_SNP [dm6]	A	C	4.177e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_sens
2R	11879857	2R_11879857_SNP [dm3] 2R_15992352_SNP [dm6]	A	T	4.177e^-4	0.866	UTR_5_PRIME Pex11 UPSTREAM CG8320	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	15285980	2R_15285980_SNP [dm3] 2R_19398475_SNP [dm6]	T	G	4.197e^-4	0.866	UTR_3_PRIME hts DOWNSTREAM hts
2L	3413102	2L_3413102_SNP [dm3] 2L_3413102_SNP [dm6]	A	G	4.206e^-4	0.866	INTRON pgant2
2R	5109293	2R_5109293_SNP [dm3] 2R_9221788_SNP [dm6]	C	G	4.240e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8640126	3L_8640126_SNP [dm3] 3L_8647026_SNP [dm6]	A	T	4.244e^-4	0.866	UPSTREAM Pex7 & 1 other DOWNSTREAM Arr2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11134802	3L_11134802_SNP [dm3] 3L_11141702_SNP [dm6]	A	G	4.247e^-4	0.866	INTRON CG32082
3L	11388715	3L_11388715_INS [dm3] 3L_11395615_INS [dm6]	A	AGGAAATTTAGTTTTGTTTA...	4.258e^-4	0.866
2R	15027331	2R_15027331_SNP [dm3] 2R_19139826_SNP [dm6]	T	A	4.266e^-4	0.866	INTRON CG15111	TF binding site mE1_TFBS_sens
2R	6715780	2R_6715780_SNP [dm3] 2R_10828275_SNP [dm6]	T	C	4.267e^-4	0.866	UTR_3_PRIME CG12344 DOWNSTREAM CG12325
X	18917459	X_18917459_SNP [dm3] X_19023426_SNP [dm6]	A	C	4.280e^-4	0.866	INTRON CG43759
X	18918760	X_18918760_SNP [dm3] X_19024727_SNP [dm6]	A	G	4.280e^-4	0.866	INTRON CG43759
X	18926984	X_18926984_SNP [dm3] X_19032951_SNP [dm6]	C	T	4.280e^-4	0.866	INTERGENIC
X	18927956	X_18927956_SNP [dm3] X_19033923_SNP [dm6]	G	A	4.280e^-4	0.866	INTERGENIC
X	18927959	X_18927959_SNP [dm3] X_19033926_SNP [dm6]	G	T	4.280e^-4	0.866	INTERGENIC
X	18928543	X_18928543_SNP [dm3] X_19034510_SNP [dm6]	T	C	4.280e^-4	0.866	INTERGENIC
2L	11667930	2L_11667930_SNP [dm3] 2L_11667930_SNP [dm6]	T	C	4.285e^-4	0.866	INTERGENIC
3R	1254508	3R_1254508_SNP [dm3] 3R_5428786_SNP [dm6]	T	A	4.306e^-4	0.866	INTRON CG14669
3L	3509579	3L_3509579_SNP [dm3] 3L_3509579_SNP [dm6]	C	G	4.309e^-4	0.866	UTR_3_PRIME CG42324
X	6007635	X_6007635_SNP [dm3] X_6113602_SNP [dm6]	G	A	4.314e^-4	0.866	SYNONYMOUS_CODING Ca-alpha1T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2688026	2L_2688026_SNP [dm3] 2L_2688026_SNP [dm6]	T	A	4.316e^-4	0.866	INTRON CG31690
3L	6509163	3L_6509163_SNP [dm3] 3L_6516063_SNP [dm6]	A	T	4.319e^-4	0.866	INTRON sfl
2L	18691176	2L_18691176_SNP [dm3] 2L_18691176_SNP [dm6]	C	T	4.320e^-4	0.866	NON_SYNONYMOUS_CODING CG10383 DOWNSTREAM CG10336
2R	13302944	2R_13302944_SNP [dm3] 2R_17415439_SNP [dm6]	C	T	4.321e^-4	0.866	NON_SYNONYMOUS_CODING cnk	TF binding site mE1_TFBS_chinmo
3R	9201558	3R_9201558_SNP [dm3] 3R_13375836_SNP [dm6]	C	A	4.325e^-4	0.866	INTRON CG9813	transposable element FlyBase
2L	16171555	2L_16171555_SNP [dm3] 2L_16171555_SNP [dm6]	T	C	4.331e^-4	0.866	INTRON Ca-alpha1D
3R	19072987	3R_19072987_SNP [dm3] 3R_23247265_SNP [dm6]	C	T	4.341e^-4	0.866	INTRON CG4467
3R	9736274	3R_9736274_SNP [dm3] 3R_13910552_SNP [dm6]	C	A	4.342e^-4	0.866	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10522735	2L_10522735_INS [dm3] 2L_10522735_INS [dm6]	A	AA	4.350e^-4	0.866	INTERGENIC
2R	5110113	2R_5110113_SNP [dm3] 2R_9222608_SNP [dm6]	G	T	4.351e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	22023762	2L_22023762_SNP [dm3] 2L_22023762_SNP [dm6]	G	A	4.360e^-4	0.866	NON_SYNONYMOUS_CODING tio	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18935731	X_18935731_SNP [dm3] X_19041698_SNP [dm6]	G	A	4.362e^-4	0.866	INTERGENIC
2R	19103544	2R_19103544_SNP [dm3] 2R_23216021_SNP [dm6]	A	G	4.363e^-4	0.866	INTERGENIC
3L	7245869	3L_7245869_SNP [dm3] 3L_7252769_SNP [dm6]	C	A	4.377e^-4	0.866	DOWNSTREAM CR43470 INTRON CG14830
2R	11181057	2R_11181057_SNP [dm3] 2R_15293552_SNP [dm6]	T	A	4.384e^-4	0.866	UTR_5_PRIME Trpm	TF binding site BDTNP1_TFBS_twi
2R	11181073	2R_11181073_DEL [dm3] 2R_15293568_DEL [dm6]	AC	A	4.384e^-4	0.866	SPLICE_SITE_REGION Trpm INTRON Trpm	TF binding site BDTNP1_TFBS_twi
2R	11181099	2R_11181099_SNP [dm3] 2R_15293594_SNP [dm6]	C	G	4.384e^-4	0.866	INTRON Trpm	TF binding site BDTNP1_TFBS_twi
3L	12323737	3L_12323737_SNP [dm3] 3L_12330637_SNP [dm6]	G	T	4.384e^-4	0.866	INTRON CG32105	TF binding site mE1_TFBS_cad
3L	14796536	3L_14796536_SNP [dm3] 3L_14803436_SNP [dm6]	C	T	4.402e^-4	0.866	UPSTREAM gnu INTERGENIC
3R	1322382	3R_1322382_DEL [dm3] 3R_5496660_DEL [dm6]	GG	G	4.403e^-4	0.866	INTRON CG31547
2L	7072803	2L_7072803_SNP [dm3] 2L_7072803_SNP [dm6]	A	T	4.404e^-4	0.866	INTRON Pvf2
2R	11167036	2R_11167036_SNP [dm3] 2R_15279531_SNP [dm6]	G	T	4.405e^-4	0.866	INTRON Trpm
3R	13727095	3R_13727095_SNP [dm3] 3R_17901373_SNP [dm6]	T	G	4.414e^-4	0.866	INTRON Rim
3L	6497286	3L_6497286_SNP [dm3] 3L_6504186_SNP [dm6]	T	A	4.427e^-4	0.866	INTRON sfl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14974563	2L_14974563_SNP [dm3] 2L_14974563_SNP [dm6]	A	G	4.429e^-4	0.866	EXON CR45331
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	4.430e^-4	0.866	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	15235960	2R_15235960_SNP [dm3] 2R_19348455_SNP [dm6]	A	G	4.433e^-4	0.866	INTRON Rgk1
2L	10351188	2L_10351188_DEL [dm3] 2L_10351188_DEL [dm6]	TATGCCAT	T	4.434e^-4	0.866	INTRON CG34367	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3796692	3L_3796692_SNP [dm3] 3L_3796692_SNP [dm6]	G	C	4.439e^-4	0.866	INTRON CG32264
2R	16131913	2R_16131913_SNP [dm3] 2R_20244408_SNP [dm6]	G	A	4.440e^-4	0.866	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	10810220	2R_10810220_SNP [dm3] 2R_14922715_SNP [dm6]	C	T	4.453e^-4	0.866	INTRON CG10249
X	3968954	X_3968954_SNP [dm3] X_4074921_SNP [dm6]	C	A	4.461e^-4	0.866	INTERGENIC
3L	2765868	3L_2765868_SNP [dm3] 3L_2765868_SNP [dm6]	A	T	4.461e^-4	0.866	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco
2L	18390516	2L_18390516_DEL [dm3] 2L_18390516_DEL [dm6]	TT	T	4.462e^-4	0.866	UTR_3_PRIME Fas3 INTRON Fas3
3R	14064780	3R_14064780_SNP [dm3] 3R_18239058_SNP [dm6]	A	C	4.463e^-4	0.866	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	10611957	3L_10611957_SNP [dm3] 3L_10618857_SNP [dm6]	A	G	4.464e^-4	0.866	INTERGENIC
3L	6796325	3L_6796325_SNP [dm3] 3L_6803225_SNP [dm6]	T	C	4.466e^-4	0.866	INTERGENIC	TF binding site mE1_TFBS_cad
2L	22037149	2L_22037149_SNP [dm3] 2L_22037149_SNP [dm6]	A	G	4.467e^-4	0.866	UPSTREAM CG41434 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6038014	2L_6038014_SNP [dm3] 2L_6038014_SNP [dm6]	A	C	4.470e^-4	0.866	UPSTREAM mtm & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	338386	3R_338386_SNP [dm3] 3R_4512664_SNP [dm6]	A	G	4.476e^-4	0.866	INTRON CG34357
2R	11891256	2R_11891256_SNP [dm3] 2R_16003751_SNP [dm6]	C	T	4.476e^-4	0.866	SYNONYMOUS_CODING CG8370	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18913595	X_18913595_DEL [dm3] X_19019562_DEL [dm6]	AT	A	4.476e^-4	0.866	INTRON CG43759
2R	19727001	2R_19727001_SNP [dm3] 2R_23839478_SNP [dm6]	T	A	4.482e^-4	0.866	UTR_3_PRIME CG5549 DOWNSTREAM snoRNA:Psi18S-176
3R	20208539	3R_20208539_SNP [dm3] 3R_24382817_SNP [dm6]	T	A	4.483e^-4	0.866	DOWNSTREAM CG17780 INTERGENIC
3L	18250481	3L_18250481_SNP [dm3] 3L_18257381_SNP [dm6]	T	G	4.488e^-4	0.866	INTERGENIC
3L	11388738	3L_11388738_DEL [dm3] 3L_11395638_DEL [dm6]	GAATCCTAGC	G	4.490e^-4	0.866	UTR_3_PRIME CG11726
3R	24115344	3R_24115344_SNP [dm3] 3R_28289622_SNP [dm6]	A	C	4.490e^-4	0.866	INTERGENIC
3L	10712320	3L_10712320_SNP [dm3] 3L_10719220_SNP [dm6]	C	T	4.493e^-4	0.866	INTERGENIC
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	4.497e^-4	0.866	INTRON Octbeta2R
2L	7592547	2L_7592547_SNP [dm3] 2L_7592547_SNP [dm6]	G	A	4.500e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18792429	3R_18792429_SNP [dm3] 3R_22966707_SNP [dm6]	C	A	4.513e^-4	0.866	SYNONYMOUS_CODING Tpl94D
3L	3015082	3L_3015082_SNP [dm3] 3L_3015082_SNP [dm6]	G	A	4.516e^-4	0.866	SYNONYMOUS_CODING CG32488
X	3538999	X_3538999_SNP [dm3] X_3644966_SNP [dm6]	T	A	4.523e^-4	0.866	INTRON AstA-R1
3R	15815751	3R_15815751_SNP [dm3] 3R_19990029_SNP [dm6]	A	G	4.528e^-4	0.866	INTRON Hs6st
3R	4965159	3R_4965159_SNP [dm3] 3R_9139437_SNP [dm6]	G	T	4.528e^-4	0.866	INTRON pum
3R	6438883	3R_6438883_SNP [dm3] 3R_10613161_SNP [dm6]	A	G	4.534e^-4	0.866	UTR_5_PRIME hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3435523	2R_3435523_SNP [dm3] 2R_7548018_SNP [dm6]	T	C	4.541e^-4	0.866	INTRON Corin
2L	7933048	2L_7933048_SNP [dm3] 2L_7933048_SNP [dm6]	G	T	4.543e^-4	0.866	INTRON Snoo	TF binding site mE1_TFBS_cad
3L	6953520	3L_6953520_SNP [dm3] 3L_6960420_SNP [dm6]	G	A	4.553e^-4	0.866	SYNONYMOUS_CODING sgl DOWNSTREAM Surf1	TF binding site mE1_TFBS_chinmo
2L	6935241	2L_6935241_SNP [dm3] 2L_6935241_SNP [dm6]	G	A	4.553e^-4	0.866	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
3R	14959966	3R_14959966_SNP [dm3] 3R_19134244_SNP [dm6]	G	A	4.560e^-4	0.866	SYNONYMOUS_CODING Cyp12a5 UPSTREAM Cyp12a4
3L	4129909	3L_4129909_SNP [dm3] 3L_4129909_SNP [dm6]	A	T	4.562e^-4	0.866	INTRON ens
X	4801665	X_4801665_SNP [dm3] X_4907632_SNP [dm6]	C	G	4.564e^-4	0.866	SYNONYMOUS_CODING CG6927	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4954022	X_4954022_SNP [dm3] X_5059989_SNP [dm6]	A	G	4.566e^-4	0.866	INTRON CR44833 & 1 other
3L	16726678	3L_16726678_SNP [dm3] 3L_16733578_SNP [dm6]	T	C	4.579e^-4	0.866	UTR_5_PRIME CG9701
3R	13950954	3R_13950954_SNP [dm3] 3R_18125232_SNP [dm6]	T	C	4.586e^-4	0.866	INTRON sr	TF binding site BDTNP1_TFBS_dl
X	12084805	X_12084805_SNP [dm3] X_12190772_SNP [dm6]	G	T	4.586e^-4	0.866	INTRON Ten-a
2L	14342164	2L_14342164_SNP [dm3] 2L_14342164_SNP [dm6]	T	A	4.602e^-4	0.866	UTR_5_PRIME CG33090 INTRON CG33090
2L	6124789	2L_6124789_SNP [dm3] 2L_6124789_SNP [dm6]	C	T	4.608e^-4	0.866	UPSTREAM Arpc4 DOWNSTREAM stai INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr
X	8435888	X_8435888_INS [dm3] X_8541855_INS [dm6]	G	GGAG	4.611e^-4	0.866	INTRON Nrg
2R	11441089	2R_11441089_SNP [dm3] 2R_15553584_SNP [dm6]	T	A	4.616e^-4	0.866	INTERGENIC
3L	2245527	3L_2245527_SNP [dm3] 3L_2245527_SNP [dm6]	G	A	4.620e^-4	0.866	SYNONYMOUS_CODING CG32301	TF binding site mE1_TFBS_cad
3L	2576180	3L_2576180_SNP [dm3] 3L_2576180_SNP [dm6]	A	G	4.623e^-4	0.866	INTRON msn
2L	3848143	2L_3848143_SNP [dm3] 2L_3848143_SNP [dm6]	A	G	4.637e^-4	0.866	INTERGENIC
3L	5751724	3L_5751724_SNP [dm3] 3L_5758624_SNP [dm6]	A	T	4.638e^-4	0.866	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15144661	2R_15144661_SNP [dm3] 2R_19257156_SNP [dm6]	T	A	4.638e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
X	18372455	X_18372455_DEL [dm3] X_18478422_DEL [dm6]	CATTCCATC	C	4.639e^-4	0.866	INTRON CG32547
2L	10267334	2L_10267334_SNP [dm3] 2L_10267334_SNP [dm6]	T	C	4.648e^-4	0.866	DOWNSTREAM Mob3 INTRON CG4953
2R	14434210	2R_14434210_SNP [dm3] 2R_18546705_SNP [dm6]	A	G	4.658e^-4	0.866	INTRON Rgk2
2R	834518	2R_834518_SNP [dm3] 2R_4947013_SNP [dm6]	G	C	4.667e^-4	0.866	INTRON Ir41a	transposable element FlyBase
2R	1568760	2R_1568760_SNP [dm3] 2R_5681255_SNP [dm6]	T	C	4.672e^-4	0.866	INTRON scaf
3L	7457629	3L_7457629_SNP [dm3] 3L_7464529_SNP [dm6]	T	G	4.687e^-4	0.866	UPSTREAM Tsp66A & 2 others INTERGENIC
3L	2765232	3L_2765232_SNP [dm3] 3L_2765232_SNP [dm6]	T	C	4.694e^-4	0.866	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10238271	2R_10238271_SNP [dm3] 2R_14350766_SNP [dm6]	T	C	4.697e^-4	0.866	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11683782	X_11683782_SNP [dm3] X_11789749_SNP [dm6]	T	C	4.698e^-4	0.866	INTRON Karl
X	10905458	X_10905458_SNP [dm3] X_11011425_SNP [dm6]	G	A	4.702e^-4	0.866	INTRON CG42339
2L	4398183	2L_4398183_SNP [dm3] 2L_4398183_SNP [dm6]	G	A	4.709e^-4	0.866	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_sens
2L	8076323	2L_8076323_SNP [dm3] 2L_8076323_SNP [dm6]	G	A	4.711e^-4	0.866	NON_SYNONYMOUS_CODING Mcr

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.229e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1795 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	6980412	3L_6980412_SNP [dm3] 3L_6987312_SNP [dm6]	G	C	7.382e^-7	0.776	INTERGENIC
3L	6980416	3L_6980416_SNP [dm3] 3L_6987316_SNP [dm6]	A	G	8.283e^-7	0.776	INTERGENIC
3L	18875409	3L_18875409_SNP [dm3] 3L_18882309_SNP [dm6]	A	G	2.454e^-6	0.925	INTRON CG3961
3L	4176822	3L_4176822_SNP [dm3] 3L_4176822_SNP [dm6]	C	T	2.861e^-6	0.925	INTRON CG18675 & 1 other
3L	4176830	3L_4176830_SNP [dm3] 3L_4176830_SNP [dm6]	G	C	2.861e^-6	0.925	INTRON CG18675 & 1 other
3L	4176652	3L_4176652_SNP [dm3] 3L_4176652_SNP [dm6]	C	T	2.961e^-6	0.925	SYNONYMOUS_CODING Teh4 INTRON CG18675
2L	2419744	2L_2419744_SNP [dm3] 2L_2419744_SNP [dm6]	T	G	3.707e^-6	0.944	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3L	5821835	3L_5821835_SNP [dm3] 3L_5828735_SNP [dm6]	C	T	5.152e^-6	0.944	INTRON vn
2L	2419737	2L_2419737_SNP [dm3] 2L_2419737_SNP [dm6]	A	G	5.266e^-6	0.944	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	8171510	2L_8171510_SNP [dm3] 2L_8171510_SNP [dm6]	C	T	6.144e^-6	0.944	INTRON Piezo
2L	9456093	2L_9456093_SNP [dm3] 2L_9456093_SNP [dm6]	A	C	6.871e^-6	0.944	INTRON numb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11190159	2L_11190159_SNP [dm3] 2L_11190159_SNP [dm6]	C	T	7.327e^-6	0.944	INTRON Ca-beta	TF binding site mE1_TFBS_HSA
3L	18267322	3L_18267322_SNP [dm3] 3L_18274222_SNP [dm6]	C	T	7.664e^-6	0.944	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	14324564	2L_14324564_SNP [dm3] 2L_14324564_SNP [dm6]	A	G	7.926e^-6	0.944	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
X	7915519	X_7915519_SNP [dm3] X_8021486_SNP [dm6]	T	C	8.373e^-6	0.944	UPSTREAM CG15333 INTRON Tbh
3L	2800633	3L_2800633_SNP [dm3] 3L_2800633_SNP [dm6]	C	T	8.606e^-6	0.944	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	10876032	3L_10876032_SNP [dm3] 3L_10882932_SNP [dm6]	T	C	9.063e^-6	0.944	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	4352256	3L_4352256_INS [dm3] 3L_4352256_INS [dm6]	T	TT	9.795e^-6	0.944	INTRON Cip4
3L	4352259	3L_4352259_SNP [dm3] 3L_4352259_SNP [dm6]	T	C	9.795e^-6	0.944	INTRON Cip4
2L	2419105	2L_2419105_SNP [dm3] 2L_2419105_SNP [dm6]	T	C	1.007e^-5	0.944	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419719	2L_2419719_SNP [dm3] 2L_2419719_SNP [dm6]	G	A	1.215e^-5	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3601739	X_3601739_SNP [dm3] X_3707706_SNP [dm6]	G	T	1.354e^-5	0.982	INTRON Rala
2L	2419710	2L_2419710_DEL [dm3] 2L_2419710_DEL [dm6]	TG	A	1.457e^-5	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17315450	2R_17315450_SNP [dm3] 2R_21427945_SNP [dm6]	A	G	1.660e^-5	0.982	INTRON Sdc
3R	23247928	3R_23247928_SNP [dm3] 3R_27422206_SNP [dm6]	G	A	1.790e^-5	0.982	INTRON side
2L	2419753	2L_2419753_SNP [dm3] 2L_2419753_SNP [dm6]	A	G	1.853e^-5	0.982	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2L	7408903	2L_7408903_SNP [dm3] 2L_7408903_SNP [dm6]	T	C	1.867e^-5	0.982	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2L	2419645	2L_2419645_SNP [dm3] 2L_2419645_SNP [dm6]	T	C	1.987e^-5	0.982	NON_SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16946718	2R_16946718_SNP [dm3] 2R_21059213_SNP [dm6]	G	A	2.066e^-5	0.982	UTR_3_PRIME cpa DOWNSTREAM CG15653
X	3700275	X_3700275_SNP [dm3] X_3806242_SNP [dm6]	C	T	2.091e^-5	0.982	INTRON fd3F
2R	17132381	2R_17132381_SNP [dm3] 2R_21244876_SNP [dm6]	A	C	2.129e^-5	0.982	INTRON ASPP	TF binding site BDTNP1_TFBS_prd
2L	2419699	2L_2419699_SNP [dm3] 2L_2419699_SNP [dm6]	G	A	2.287e^-5	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16181671	3R_16181671_SNP [dm3] 3R_20355949_SNP [dm6]	A	C	2.357e^-5	0.982	INTERGENIC
3R	4460318	3R_4460318_SNP [dm3] 3R_8634596_SNP [dm6]	G	C	2.446e^-5	0.982	NON_SYNONYMOUS_CODING Or85e
3L	18269343	3L_18269343_SNP [dm3] 3L_18276243_SNP [dm6]	C	A	2.466e^-5	0.982	INTERGENIC
2L	1717804	2L_1717804_SNP [dm3] 2L_1717804_SNP [dm6]	T	C	2.487e^-5	0.982	SYNONYMOUS_CODING Rim2
X	5848980	X_5848980_SNP [dm3] X_5954947_SNP [dm6]	G	C	2.522e^-5	0.982	UPSTREAM CG6067 DOWNSTREAM CG6048 INTERGENIC
3R	10495536	3R_10495536_SNP [dm3] 3R_14669814_SNP [dm6]	A	T	2.561e^-5	0.982	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18270058	3L_18270058_SNP [dm3] 3L_18276958_SNP [dm6]	T	A	2.623e^-5	0.982	INTERGENIC
X	7915457	X_7915457_SNP [dm3] X_8021424_SNP [dm6]	A	T	2.647e^-5	0.982	UPSTREAM CG15333 INTRON Tbh
3L	509693	3L_509693_SNP [dm3] 3L_509693_SNP [dm6]	G	A	2.703e^-5	0.982	INTRON klar
2R	14665643	2R_14665643_MNP [dm3] 2R_18778138_MNP [dm6]	TTG	CCT	2.735e^-5	0.982	DOWNSTREAM CR43964 INTERGENIC
2R	14666191	2R_14666191_DEL [dm3] 2R_18778686_DEL [dm6]	TCACCGTTCT	T	2.823e^-5	0.982	INTERGENIC
2R	11436875	2R_11436875_SNP [dm3] 2R_15549370_SNP [dm6]	G	T	2.903e^-5	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	2419523	2L_2419523_SNP [dm3] 2L_2419523_SNP [dm6]	G	T	2.957e^-5	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9287549	X_9287549_SNP [dm3] X_9393516_SNP [dm6]	C	T	2.958e^-5	0.982	INTRON mgl	TF binding site mE1_TFBS_inv
2R	14665656	2R_14665656_SNP [dm3] 2R_18778151_SNP [dm6]	A	T	2.968e^-5	0.982	DOWNSTREAM CR43964 INTERGENIC
2R	16948441	2R_16948441_SNP [dm3] 2R_21060936_SNP [dm6]	C	T	2.972e^-5	0.982	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	20613124	2L_20613124_SNP [dm3] 2L_20613124_SNP [dm6]	T	A	3.053e^-5	0.982	INTRON CR44909
X	6540359	X_6540359_SNP [dm3] X_6646326_SNP [dm6]	G	A	3.077e^-5	0.982	INTRON pigs	TF binding site mE1_TFBS_chinmo
3L	18269216	3L_18269216_SNP [dm3] 3L_18276116_SNP [dm6]	T	C	3.113e^-5	0.982	INTERGENIC
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	3.157e^-5	0.982	UPSTREAM CG33998 INTRON Hs3st-A
2L	1620922	2L_1620922_SNP [dm3] 2L_1620922_SNP [dm6]	G	A	3.177e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16439297	X_16439297_SNP [dm3] X_16545264_SNP [dm6]	G	A	3.241e^-5	0.982	SYNONYMOUS_CODING CG9902	TF binding site mE1_TFBS_HSA
3L	20708407	3L_20708407_SNP [dm3] 3L_20715307_SNP [dm6]	T	A	3.267e^-5	0.982	DOWNSTREAM CG34260 INTRON cmpy	TF binding site BDTNP1_TFBS_twi
3L	5821987	3L_5821987_SNP [dm3] 3L_5828887_SNP [dm6]	T	C	3.272e^-5	0.982	INTRON vn
3L	5821985	3L_5821985_SNP [dm3] 3L_5828885_SNP [dm6]	C	T	3.288e^-5	0.982	INTRON vn
3L	6721023	3L_6721023_SNP [dm3] 3L_6727923_SNP [dm6]	G	A	3.334e^-5	0.982	UPSTREAM CR45417 DOWNSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21204844	3L_21204844_SNP [dm3] 3L_21211744_SNP [dm6]	G	A	3.400e^-5	0.982	INTRON CG10508	TF binding site mE1_TFBS_cad
X	12104299	X_12104299_SNP [dm3] X_12210266_SNP [dm6]	G	A	3.489e^-5	0.982	INTRON Ten-a
3L	10876047	3L_10876047_SNP [dm3] 3L_10882947_SNP [dm6]	A	G	3.498e^-5	0.982	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	13724775	3R_13724775_SNP [dm3] 3R_17899053_SNP [dm6]	G	A	3.555e^-5	0.982	INTRON Rim
X	4493675	X_4493675_SNP [dm3] X_4599642_SNP [dm6]	A	T	3.627e^-5	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9759639	2R_9759639_SNP [dm3] 2R_13872134_SNP [dm6]	C	T	3.655e^-5	0.982	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	10628517	3L_10628517_SNP [dm3] 3L_10635417_SNP [dm6]	C	T	3.671e^-5	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2R	14666176	2R_14666176_SNP [dm3] 2R_18778671_SNP [dm6]	A	C	3.691e^-5	0.982	INTERGENIC
X	6255260	X_6255260_SNP [dm3] X_6361227_SNP [dm6]	A	C	3.720e^-5	0.982	UTR_3_PRIME kdn DOWNSTREAM swaPsi	TF binding site BDTNP1_TFBS_dl
3L	5778736	3L_5778736_SNP [dm3] 3L_5785636_SNP [dm6]	A	C	3.739e^-5	0.982	DOWNSTREAM PGRP-LD & 1 other INTRON Cralbp
2R	14666328	2R_14666328_SNP [dm3] 2R_18778823_SNP [dm6]	C	A	3.790e^-5	0.982	INTERGENIC
X	8174534	X_8174534_SNP [dm3] X_8280501_SNP [dm6]	G	A	3.886e^-5	0.982	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1620919	2L_1620919_SNP [dm3] 2L_1620919_SNP [dm6]	A	G	3.952e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1620917	2L_1620917_INS [dm3] 2L_1620917_INS [dm6]	T	TG	4.000e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16731541	2L_16731541_SNP [dm3] 2L_16731541_SNP [dm6]	A	T	4.007e^-5	0.982	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6008051	2L_6008051_SNP [dm3] 2L_6008051_SNP [dm6]	G	A	4.207e^-5	0.982	INTRON CG9098
X	5258292	X_5258292_DEL [dm3] X_5364259_DEL [dm6]	GAGAGAG	G	4.215e^-5	0.982	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7408864	2L_7408864_SNP [dm3] 2L_7408864_SNP [dm6]	A	T	4.220e^-5	0.982	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
2L	7408876	2L_7408876_SNP [dm3] 2L_7408876_SNP [dm6]	A	T	4.220e^-5	0.982	UTR_3_PRIME CG5181 DOWNSTREAM CG5177
3L	5751724	3L_5751724_SNP [dm3] 3L_5758624_SNP [dm6]	A	T	4.295e^-5	0.982	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6892699	2R_6892699_SNP [dm3] 2R_11005194_SNP [dm6]	C	A	4.561e^-5	0.982	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18269851	3L_18269851_INS [dm3] 3L_18276751_INS [dm6]	T	TT	4.576e^-5	0.982	INTERGENIC
3L	10876055	3L_10876055_SNP [dm3] 3L_10882955_SNP [dm6]	A	T	4.615e^-5	0.982	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	14666183	2R_14666183_SNP [dm3] 2R_18778678_SNP [dm6]	A	G	4.666e^-5	0.982	INTERGENIC
2R	14850681	2R_14850681_SNP [dm3] 2R_18963176_SNP [dm6]	A	C	4.760e^-5	0.982	INTERGENIC
3L	5821988	3L_5821988_SNP [dm3] 3L_5828888_SNP [dm6]	T	C	4.811e^-5	0.982	INTRON vn
3R	15636652	3R_15636652_SNP [dm3] 3R_19810930_SNP [dm6]	A	G	4.884e^-5	0.982	INTRON bnl
X	3700250	X_3700250_INS [dm3] X_3806217_INS [dm6]	T	TGTTTTTCCAAGCCGTGTGT...	4.985e^-5	0.982	INTRON fd3F
2L	16731493	2L_16731493_SNP [dm3] 2L_16731493_SNP [dm6]	A	G	5.026e^-5	0.982	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	16731789	2L_16731789_SNP [dm3] 2L_16731789_SNP [dm6]	G	A	5.131e^-5	0.982	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	19641784	3L_19641784_DEL [dm3] 3L_19648684_DEL [dm6]	CTCTTTTGACTTTATAGACC...	C	5.174e^-5	0.982	INTRON Oat
3L	18270020	3L_18270020_INS [dm3] 3L_18276920_INS [dm6]	T	TT	5.210e^-5	0.982	INTERGENIC
2R	17410502	2R_17410502_SNP [dm3] 2R_21522997_SNP [dm6]	G	T	5.213e^-5	0.982	UTR_5_PRIME Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	1780461	2R_1780461_SNP [dm3] 2R_5892956_SNP [dm6]	C	G	5.223e^-5	0.982	UPSTREAM CG43366 INTERGENIC
3R	11553907	3R_11553907_SNP [dm3] 3R_15728185_SNP [dm6]	A	G	5.248e^-5	0.982	INTERGENIC
X	18881504	X_18881504_SNP [dm3] X_18987471_SNP [dm6]	A	G	5.274e^-5	0.982	INTRON CG43759
X	21471217	X_21471217_SNP [dm3] X_21600190_SNP [dm6]	A	G	5.284e^-5	0.982	DOWNSTREAM CG14476 INTERGENIC
X	9286349	X_9286349_SNP [dm3] X_9392316_SNP [dm6]	C	G	5.335e^-5	0.982	INTRON mgl
X	15642451	X_15642451_SNP [dm3] X_15748418_SNP [dm6]	C	T	5.372e^-5	0.982	SYNONYMOUS_CODING Tcp-1zeta UPSTREAM CG8239	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14961292	3R_14961292_SNP [dm3] 3R_19135570_SNP [dm6]	G	A	5.428e^-5	0.982	SYNONYMOUS_CODING Cyp12a4 DOWNSTREAM Cyp12a5
2L	1620926	2L_1620926_SNP [dm3] 2L_1620926_SNP [dm6]	A	T	5.441e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10007851	X_10007851_SNP [dm3] X_10113818_SNP [dm6]	C	A	5.538e^-5	0.982	DOWNSTREAM CR44894 INTRON RhoU	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11634764	2R_11634764_SNP [dm3] 2R_15747259_SNP [dm6]	G	A	5.731e^-5	0.982	INTRON CG30089	TF binding site mE1_TFBS_cad
3L	18875496	3L_18875496_SNP [dm3] 3L_18882396_SNP [dm6]	T	C	5.847e^-5	0.982	UTR_5_PRIME CG3961 INTRON CG3961
3L	6340624	3L_6340624_SNP [dm3] 3L_6347524_SNP [dm6]	T	G	5.877e^-5	0.982	INTRON CG13300	TF binding site mE1_TFBS_chinmo
3L	5751707	3L_5751707_SNP [dm3] 3L_5758607_SNP [dm6]	A	C	5.880e^-5	0.982	INTRON Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14830848	2R_14830848_SNP [dm3] 2R_18943343_SNP [dm6]	G	A	5.904e^-5	0.982	INTRON sano
3R	16181666	3R_16181666_SNP [dm3] 3R_20355944_SNP [dm6]	C	T	5.908e^-5	0.982	INTERGENIC
2R	11632433	2R_11632433_SNP [dm3] 2R_15744928_SNP [dm6]	T	A	6.015e^-5	0.982	INTRON CG30089	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9821632	2L_9821632_SNP [dm3] 2L_9821632_SNP [dm6]	G	A	6.018e^-5	0.982	INTRON nAChRalpha6
2L	1620928	2L_1620928_SNP [dm3] 2L_1620928_SNP [dm6]	A	C	6.113e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21471228	X_21471228_SNP [dm3] X_21600201_SNP [dm6]	C	T	6.199e^-5	0.982	DOWNSTREAM CG14476 INTERGENIC
X	13821955	X_13821955_SNP [dm3] X_13927922_SNP [dm6]	C	T	6.212e^-5	0.982	INTRON mamo
2R	6006205	2R_6006205_SNP [dm3] 2R_10118700_SNP [dm6]	T	C	6.214e^-5	0.982	INTRON dmpd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23297022	3R_23297022_SNP [dm3] 3R_27471300_SNP [dm6]	G	C	6.272e^-5	0.982	INTERGENIC
3R	11411898	3R_11411898_SNP [dm3] 3R_15586176_SNP [dm6]	G	A	6.298e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	5821957	3L_5821957_SNP [dm3] 3L_5828857_SNP [dm6]	C	T	6.353e^-5	0.982	INTRON vn
2L	3759193	2L_3759193_SNP [dm3] 2L_3759193_SNP [dm6]	A	G	6.470e^-5	0.982	UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
3R	22525439	3R_22525439_SNP [dm3] 3R_26699717_SNP [dm6]	T	G	6.508e^-5	0.982	SPLICE_SITE_REGION amon SYNONYMOUS_CODING amon
X	4493375	X_4493375_SNP [dm3] X_4599342_SNP [dm6]	T	G	6.572e^-5	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	13668618	2L_13668618_SNP [dm3] 2L_13668618_SNP [dm6]	T	G	6.603e^-5	0.982	INTRON CG18507
3L	10071773	3L_10071773_INS [dm3] 3L_10078673_INS [dm6]	T	TT	6.780e^-5	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
2R	12969515	2R_12969515_SNP [dm3] 2R_17082010_SNP [dm6]	C	T	6.790e^-5	0.982	INTRON CG30460
X	4797297	X_4797297_SNP [dm3] X_4903264_SNP [dm6]	C	T	6.843e^-5	0.982	INTRON CG42594
2L	15166366	2L_15166366_SNP [dm3] 2L_15166366_SNP [dm6]	A	G	6.847e^-5	0.982	SYNONYMOUS_CODING CG4168
3L	14538623	3L_14538623_SNP [dm3] 3L_14545523_SNP [dm6]	C	G	6.941e^-5	0.982	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19346695	X_19346695_INS [dm3] X_19452662_INS [dm6]	T	TT	6.976e^-5	0.982	INTRON kek5	TF binding site mE1_TFBS_chinmo
3R	23470376	3R_23470376_SNP [dm3] 3R_27644654_SNP [dm6]	C	G	7.010e^-5	0.982	INTRON tau
3L	1524051	3L_1524051_SNP [dm3] 3L_1524051_SNP [dm6]	C	T	7.033e^-5	0.982	SYNONYMOUS_CODING CG12090 DOWNSTREAM Psa
X	11420770	X_11420770_SNP [dm3] X_11526737_SNP [dm6]	A	T	7.137e^-5	0.982	INTRON Drak	TF binding site BDTNP1_TFBS_dl
2R	11436781	2R_11436781_SNP [dm3] 2R_15549276_SNP [dm6]	A	C	7.285e^-5	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z
3L	20941581	3L_20941581_SNP [dm3] 3L_20948481_SNP [dm6]	G	A	7.334e^-5	0.982	INTRON fng
2R	6006416	2R_6006416_SNP [dm3] 2R_10118911_SNP [dm6]	A	G	7.393e^-5	0.982	INTRON dmpd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5821980	3L_5821980_SNP [dm3] 3L_5828880_SNP [dm6]	C	T	7.563e^-5	0.982	INTRON vn
2L	6800121	2L_6800121_SNP [dm3] 2L_6800121_SNP [dm6]	A	G	7.596e^-5	0.982	DOWNSTREAM CR43610 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
3R	15638482	3R_15638482_SNP [dm3] 3R_19812760_SNP [dm6]	C	T	7.651e^-5	0.982	INTRON bnl
2R	6002365	2R_6002365_SNP [dm3] 2R_10114860_SNP [dm6]	T	C	7.744e^-5	0.982	INTRON Pfk
3L	10793964	3L_10793964_SNP [dm3] 3L_10800864_SNP [dm6]	A	G	7.815e^-5	0.982	UPSTREAM CG12523 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16130908	2R_16130908_SNP [dm3] 2R_20243403_SNP [dm6]	A	T	7.858e^-5	0.982	SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	6006725	2R_6006725_SNP [dm3] 2R_10119220_SNP [dm6]	A	C	7.865e^-5	0.982	INTRON dmpd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11481311	3R_11481311_SNP [dm3] 3R_15655589_SNP [dm6]	A	C	8.142e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1620934	2L_1620934_SNP [dm3] 2L_1620934_SNP [dm6]	G	A	8.342e^-5	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13753330	2L_13753330_SNP [dm3] 2L_13753330_SNP [dm6]	A	G	8.344e^-5	0.982	INTRON CR44846 & 1 other
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	8.388e^-5	0.982	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18931491	3L_18931491_SNP [dm3] 3L_18938391_SNP [dm6]	T	C	8.388e^-5	0.982	INTRON CG32204	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23249334	3R_23249334_SNP [dm3] 3R_27423612_SNP [dm6]	G	T	8.435e^-5	0.982	INTRON side
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	8.450e^-5	0.982	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
3L	2551767	3L_2551767_SNP [dm3] 3L_2551767_SNP [dm6]	C	A	8.501e^-5	0.982	INTRON Spn
2R	11436686	2R_11436686_SNP [dm3] 2R_15549181_SNP [dm6]	A	C	8.522e^-5	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z
3R	23450192	3R_23450192_SNP [dm3] 3R_27624470_SNP [dm6]	G	A	8.604e^-5	0.982	NON_SYNONYMOUS_CODING CG5612 INTRON Tusp
2L	20613111	2L_20613111_DEL [dm3] 2L_20613111_DEL [dm6]	AGCAAAAGAG	T	8.676e^-5	0.982	INTRON CR44909
3R	11416234	3R_11416234_SNP [dm3] 3R_15590512_SNP [dm6]	C	T	8.690e^-5	0.982	INTERGENIC
3R	11481303	3R_11481303_INS [dm3] 3R_15655581_INS [dm6]	A	AA	8.728e^-5	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	5989026	2R_5989026_SNP [dm3] 2R_10101521_SNP [dm6]	T	A	8.729e^-5	0.982	INTRON 14-3-3zeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9458115	2L_9458115_SNP [dm3] 2L_9458115_SNP [dm6]	T	C	8.749e^-5	0.982	INTRON numb
2L	10382556	2L_10382556_SNP [dm3] 2L_10382556_SNP [dm6]	T	G	9.104e^-5	0.982	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
X	5258167	X_5258167_SNP [dm3] X_5364134_SNP [dm6]	A	T	9.142e^-5	0.982	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3772628	2R_3772628_SNP [dm3] 2R_7885123_SNP [dm6]	T	C	9.152e^-5	0.982	INTRON Dgk	TF binding site mE1_TFBS_Trl
3R	16181682	3R_16181682_SNP [dm3] 3R_20355960_SNP [dm6]	T	C	9.216e^-5	0.982	INTERGENIC
X	14477110	X_14477110_SNP [dm3] X_14583077_SNP [dm6]	G	T	9.265e^-5	0.982	UPSTREAM nmdyn-D6 & 1 other DOWNSTREAM CG14414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10382562	2L_10382562_SNP [dm3] 2L_10382562_SNP [dm6]	C	T	9.324e^-5	0.982	UTR_3_PRIME gny DOWNSTREAM gny INTRON CG5096	TF binding site mE1_TFBS_kn
3R	11318017	3R_11318017_SNP [dm3] 3R_15492295_SNP [dm6]	G	C	9.395e^-5	0.982	NON_SYNONYMOUS_CODING CG5205	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4003125	3L_4003125_SNP [dm3] 3L_4003125_SNP [dm6]	G	T	9.578e^-5	0.982	UPSTREAM CG14985 INTERGENIC
2L	4090272	2L_4090272_SNP [dm3] 2L_4090272_SNP [dm6]	A	G	9.642e^-5	0.982	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	5985471	2R_5985471_SNP [dm3] 2R_10097966_SNP [dm6]	T	C	9.661e^-5	0.982	SYNONYMOUS_CODING Jra DOWNSTREAM RpLP0-like	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	5320690	X_5320690_INS [dm3] X_5426657_INS [dm6]	T	TT	9.746e^-5	0.982	UTR_3_PRIME CG4165 UPSTREAM CG16756
3L	3999438	3L_3999438_SNP [dm3] 3L_3999438_SNP [dm6]	G	A	9.776e^-5	0.982	INTERGENIC
2L	2419426	2L_2419426_SNP [dm3] 2L_2419426_SNP [dm6]	G	A	9.980e^-5	0.982	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
3R	9970445	3R_9970445_SNP [dm3] 3R_14144723_SNP [dm6]	C	T	1.009e^-4	0.982	INTERGENIC
X	4813855	X_4813855_SNP [dm3] X_4919822_SNP [dm6]	C	A	1.010e^-4	0.982	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4478034	X_4478034_SNP [dm3] X_4584001_SNP [dm6]	A	T	1.014e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12896749	X_12896749_SNP [dm3] X_13002716_SNP [dm6]	T	C	1.027e^-4	0.982	INTRON rad
2L	16731965	2L_16731965_SNP [dm3] 2L_16731965_SNP [dm6]	T	G	1.032e^-4	0.982	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2R	9943181	2R_9943181_SNP [dm3] 2R_14055676_SNP [dm6]	C	T	1.035e^-4	0.982	INTRON mam	TF binding site mE1_TFBS_cad
3L	5823386	3L_5823386_SNP [dm3] 3L_5830286_SNP [dm6]	A	T	1.040e^-4	0.982	INTRON vn
3R	11496456	3R_11496456_SNP [dm3] 3R_15670734_SNP [dm6]	T	C	1.052e^-4	0.982	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16100446	2R_16100446_SNP [dm3] 2R_20212941_SNP [dm6]	C	G	1.057e^-4	0.982	UPSTREAM CG16894 INTERGENIC
2L	16731740	2L_16731740_SNP [dm3] 2L_16731740_SNP [dm6]	C	T	1.071e^-4	0.982	NON_SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 & 1 other DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	6004478	2R_6004478_SNP [dm3] 2R_10116973_SNP [dm6]	T	C	1.075e^-4	0.982	UTR_3_PRIME Pfk UPSTREAM dmpd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18139658	3R_18139658_SNP [dm3] 3R_22313936_SNP [dm6]	C	A	1.094e^-4	0.982	INTRON CG34377
2R	6001513	2R_6001513_SNP [dm3] 2R_10114008_SNP [dm6]	G	A	1.102e^-4	0.982	INTRON Pfk
3L	10708540	3L_10708540_SNP [dm3] 3L_10715440_SNP [dm6]	A	T	1.103e^-4	0.982	INTERGENIC
X	16615952	X_16615952_SNP [dm3] X_16721919_SNP [dm6]	T	A	1.106e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3L	7124177	3L_7124177_SNP [dm3] 3L_7131077_SNP [dm6]	T	A	1.127e^-4	0.982	UPSTREAM Dbi INTRON CG8628
2L	7409033	2L_7409033_SNP [dm3] 2L_7409033_SNP [dm6]	C	A	1.140e^-4	0.982	SYNONYMOUS_CODING CG5181 DOWNSTREAM CG5177
2L	2419462	2L_2419462_SNP [dm3] 2L_2419462_SNP [dm6]	A	G	1.151e^-4	0.982	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
X	18881831	X_18881831_INS [dm3] X_18987798_INS [dm6]	A	AGATACTCGCACACAA...	1.154e^-4	0.982	INTRON CG43759
3L	10793340	3L_10793340_SNP [dm3] 3L_10800240_SNP [dm6]	A	T	1.164e^-4	0.982	UPSTREAM CG12523 INTERGENIC
3R	23227282	3R_23227282_SNP [dm3] 3R_27401560_SNP [dm6]	C	A	1.165e^-4	0.982	INTRON side
3L	1586560	3L_1586560_SNP [dm3] 3L_1586560_SNP [dm6]	T	A	1.176e^-4	0.982	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	4103583	X_4103583_SNP [dm3] X_4209550_SNP [dm6]	G	T	1.179e^-4	0.982	INTERGENIC
2R	6002395	2R_6002395_SNP [dm3] 2R_10114890_SNP [dm6]	G	A	1.180e^-4	0.982	INTRON Pfk
X	22231585	X_22231585_SNP [dm3] X_22829749_SNP [dm6]	G	A	1.181e^-4	0.982	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	16615943	X_16615943_SNP [dm3] X_16721910_SNP [dm6]	G	C	1.197e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	14203222	3R_14203222_SNP [dm3] 3R_18377500_SNP [dm6]	G	A	1.202e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC
2R	18172671	2R_18172671_SNP [dm3] 2R_22285166_SNP [dm6]	G	T	1.204e^-4	0.982	INTRON dve	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9458769	2L_9458769_SNP [dm3] 2L_9458769_SNP [dm6]	G	A	1.219e^-4	0.982	INTRON numb
3L	10456004	3L_10456004_SNP [dm3] 3L_10462904_SNP [dm6]	C	T	1.219e^-4	0.982	SYNONYMOUS_CODING Gem3 UPSTREAM CG32061	TF binding site mE1_TFBS_bab1
2R	5992985	2R_5992985_INS [dm3] 2R_10105480_INS [dm6]	T	TA	1.246e^-4	0.982	INTRON 14-3-3zeta	TF binding site mE1_TFBS_cad
2L	16213458	2L_16213458_SNP [dm3] 2L_16213458_SNP [dm6]	G	A	1.252e^-4	0.982	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16731337	2L_16731337_SNP [dm3] 2L_16731337_SNP [dm6]	A	G	1.266e^-4	0.982	SYNONYMOUS_CODING Prosbeta4 UPSTREAM CG17996 DOWNSTREAM CG31812	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26330622	3R_26330622_SNP [dm3] 3R_30504900_SNP [dm6]	A	G	1.271e^-4	0.982	NON_SYNONYMOUS_CODING PH4alphaSG1
X	18982600	X_18982600_SNP [dm3] X_19088567_SNP [dm6]	G	T	1.282e^-4	0.982	INTERGENIC
3L	12507406	3L_12507406_SNP [dm3] 3L_12514306_SNP [dm6]	T	G	1.285e^-4	0.982	UPSTREAM tral DOWNSTREAM CR45168 INTRON sti	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens
2R	11398283	2R_11398283_SNP [dm3] 2R_15510778_SNP [dm6]	C	T	1.295e^-4	0.982	UPSTREAM GalNAc-T1 INTERGENIC
X	2362060	X_2362060_SNP [dm3] X_2468027_SNP [dm6]	A	T	1.299e^-4	0.982	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16439276	X_16439276_SNP [dm3] X_16545243_SNP [dm6]	A	G	1.302e^-4	0.982	SYNONYMOUS_CODING CG9902	TF binding site mE1_TFBS_HSA
3R	14819633	3R_14819633_SNP [dm3] 3R_18993911_SNP [dm6]	C	A	1.302e^-4	0.982	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	6377680	2L_6377680_SNP [dm3] 2L_6377680_SNP [dm6]	C	T	1.304e^-4	0.982	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7566262	2R_7566262_SNP [dm3] 2R_11678757_SNP [dm6]	G	A	1.305e^-4	0.982	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3L	5418449	3L_5418449_SNP [dm3] 3L_5425349_SNP [dm6]	A	T	1.308e^-4	0.982	INTRON CG34391	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14538580	3L_14538580_SNP [dm3] 3L_14545480_SNP [dm6]	G	A	1.310e^-4	0.982	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	18423193	X_18423193_SNP [dm3] X_18529160_SNP [dm6]	A	T	1.313e^-4	0.982	NON_SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx
2L	1443220	2L_1443220_SNP [dm3] 2L_1443220_SNP [dm6]	A	C	1.320e^-4	0.982	NON_SYNONYMOUS_CODING CG43402
2L	20769979	2L_20769979_SNP [dm3] 2L_20769979_SNP [dm6]	C	A	1.321e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9204659	3L_9204659_SNP [dm3] 3L_9211559_SNP [dm6]	C	T	1.331e^-4	0.982	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	18269874	3L_18269874_SNP [dm3] 3L_18276774_SNP [dm6]	T	G	1.341e^-4	0.982	INTERGENIC
3R	23450197	3R_23450197_SNP [dm3] 3R_27624475_SNP [dm6]	A	G	1.350e^-4	0.982	SYNONYMOUS_CODING CG5612 INTRON Tusp
2L	11964445	2L_11964445_SNP [dm3] 2L_11964445_SNP [dm6]	A	T	1.351e^-4	0.982	INTRON CR43314
3L	11654517	3L_11654517_SNP [dm3] 3L_11661417_SNP [dm6]	C	G	1.354e^-4	0.982	INTRON CG32085
2L	8471331	2L_8471331_SNP [dm3] 2L_8471331_SNP [dm6]	G	A	1.354e^-4	0.982	INTRON d
2R	11610983	2R_11610983_SNP [dm3] 2R_15723478_SNP [dm6]	T	G	1.357e^-4	0.982	INTERGENIC
3L	4560948	3L_4560948_DEL [dm3] 3L_4560948_DEL [dm6]	AA	A	1.358e^-4	0.982	INTRON CG42540
3R	20853107	3R_20853107_SNP [dm3] 3R_25027385_SNP [dm6]	C	T	1.360e^-4	0.982	INTRON Hr96
3L	10631256	3L_10631256_SNP [dm3] 3L_10638156_SNP [dm6]	C	G	1.368e^-4	0.982	START_GAINED CG8009 UTR_5_PRIME CG8009 UPSTREAM E_z_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10330294	3R_10330294_SNP [dm3] 3R_14504572_SNP [dm6]	T	C	1.379e^-4	0.982	INTRON CR44177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10632147	3L_10632147_SNP [dm3] 3L_10639047_SNP [dm6]	T	A	1.383e^-4	0.982	UPSTREAM E_z_ & 1 other INTRON CG8009
3R	8594721	3R_8594721_SNP [dm3] 3R_12768999_SNP [dm6]	T	C	1.390e^-4	0.982	DOWNSTREAM CR44232 INTRON beat-Vc
X	2776558	X_2776558_SNP [dm3] X_2882525_SNP [dm6]	G	C	1.407e^-4	0.982	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	542382	2L_542382_SNP [dm3] 2L_542382_SNP [dm6]	A	G	1.409e^-4	0.982	DOWNSTREAM Spp INTRON lwr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	6017450	2R_6017450_SNP [dm3] 2R_10129945_SNP [dm6]	C	G	1.415e^-4	0.982	INTRON gem	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16131974	2R_16131974_SNP [dm3] 2R_20244469_SNP [dm6]	C	A	1.416e^-4	0.982	INTRON CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	18372469	X_18372469_SNP [dm3] X_18478436_SNP [dm6]	G	A	1.419e^-4	0.982	INTRON CG32547
X	18881795	X_18881795_INS [dm3] X_18987762_INS [dm6]	T	TGGT	1.432e^-4	0.982	INTRON CG43759
2R	16724027	2R_16724027_SNP [dm3] 2R_20836522_SNP [dm6]	C	T	1.439e^-4	0.982	UPSTREAM insc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8876295	2L_8876295_DEL [dm3] 2L_8876295_DEL [dm6]	GG	G	1.439e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	10179369	3R_10179369_SNP [dm3] 3R_14353647_SNP [dm6]	G	A	1.451e^-4	0.982	INTRON NK7.1
2R	11388393	2R_11388393_SNP [dm3] 2R_15500888_SNP [dm6]	G	A	1.451e^-4	0.982	SYNONYMOUS_CODING Ir52a UPSTREAM Ir52b
2R	1535179	2R_1535179_SNP [dm3] 2R_5647674_SNP [dm6]	C	A	1.455e^-4	0.982	INTRON CG11665	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	4965234	3R_4965234_SNP [dm3] 3R_9139512_SNP [dm6]	C	T	1.459e^-4	0.982	INTRON pum
3R	23446593	3R_23446593_SNP [dm3] 3R_27620871_SNP [dm6]	C	G	1.468e^-4	0.982	INTRON Tusp
2R	11785864	2R_11785864_SNP [dm3] 2R_15898359_SNP [dm6]	G	T	1.469e^-4	0.982	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19104996	2R_19104996_SNP [dm3] 2R_23217473_SNP [dm6]	A	G	1.472e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17410326	2R_17410326_DEL [dm3] 2R_21522821_DEL [dm6]	ATACA	A	1.474e^-4	0.982	UTR_5_PRIME Egfr UPSTREAM CG30289	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	12374897	2R_12374897_SNP [dm3] 2R_16487392_SNP [dm6]	G	C	1.478e^-4	0.982	NON_SYNONYMOUS_CODING CG33458 UPSTREAM CG33459
2R	16948955	2R_16948955_SNP [dm3] 2R_21061450_SNP [dm6]	T	C	1.482e^-4	0.982	UTR_3_PRIME mRpL54 UPSTREAM CG15653 & 1 other	TF binding site mE1_TFBS_sens
2R	6011166	2R_6011166_INS [dm3] 2R_10123661_INS [dm6]	G	GCTAAG	1.482e^-4	0.982	UPSTREAM gem INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
3L	5821389	3L_5821389_SNP [dm3] 3L_5828289_SNP [dm6]	A	G	1.494e^-4	0.982	INTRON vn
2R	9306919	2R_9306919_SNP [dm3] 2R_13419414_SNP [dm6]	T	A	1.497e^-4	0.982	INTRON CG42321
2L	6377658	2L_6377658_SNP [dm3] 2L_6377658_SNP [dm6]	C	T	1.497e^-4	0.982	DOWNSTREAM CG42368 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	17308604	2L_17308604_SNP [dm3] 2L_17308604_SNP [dm6]	T	A	1.499e^-4	0.982	INTERGENIC
3R	14203225	3R_14203225_SNP [dm3] 3R_18377503_SNP [dm6]	G	A	1.525e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC
2L	11190060	2L_11190060_SNP [dm3] 2L_11190060_SNP [dm6]	T	A	1.527e^-4	0.982	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9709758	2L_9709758_SNP [dm3] 2L_9709758_SNP [dm6]	C	T	1.530e^-4	0.982	SYNONYMOUS_CODING CG4364 DOWNSTREAM pelo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
X	18877692	X_18877692_SNP [dm3] X_18983659_SNP [dm6]	C	T	1.533e^-4	0.982	INTRON CG43759
2R	12382228	2R_12382228_SNP [dm3] 2R_16494723_SNP [dm6]	T	A	1.538e^-4	0.982	INTERGENIC
X	15731394	X_15731394_SNP [dm3] X_15837361_SNP [dm6]	T	C	1.540e^-4	0.982	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
X	16615962	X_16615962_DEL [dm3] X_16721929_DEL [dm6]	TTTAT	T	1.542e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	11039474	3R_11039474_SNP [dm3] 3R_15213752_SNP [dm6]	T	C	1.550e^-4	0.982	UPSTREAM CG4210 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	1813054	2R_1813054_SNP [dm3] 2R_5925549_SNP [dm6]	G	T	1.559e^-4	0.982	SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad
3R	10495512	3R_10495512_SNP [dm3] 3R_14669790_SNP [dm6]	T	C	1.562e^-4	0.982	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14665497	2R_14665497_SNP [dm3] 2R_18777992_SNP [dm6]	C	G	1.574e^-4	0.982	DOWNSTREAM CR43964 INTERGENIC
X	4813882	X_4813882_SNP [dm3] X_4919849_SNP [dm6]	A	C	1.580e^-4	0.982	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23436443	3R_23436443_SNP [dm3] 3R_27610721_SNP [dm6]	G	A	1.583e^-4	0.982	INTRON Tusp
2R	5983504	2R_5983504_SNP [dm3] 2R_10095999_SNP [dm6]	A	C	1.583e^-4	0.982	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
2R	13816343	2R_13816343_SNP [dm3] 2R_17928838_SNP [dm6]	A	T	1.590e^-4	0.982	INTERGENIC
2L	22037149	2L_22037149_SNP [dm3] 2L_22037149_SNP [dm6]	A	G	1.594e^-4	0.982	UPSTREAM CG41434 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13691794	X_13691794_SNP [dm3] X_13797761_SNP [dm6]	T	A	1.600e^-4	0.982	UPSTREAM CG10996 INTRON inaE
3L	6500527	3L_6500527_SNP [dm3] 3L_6507427_SNP [dm6]	C	T	1.603e^-4	0.982	INTRON sfl
3R	17387576	3R_17387576_DEL [dm3] 3R_21561854_DEL [dm6]	GGCAGTGTAAATGTGTGTG...	G	1.605e^-4	0.982	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	14686898	X_14686898_SNP [dm3] X_14792865_SNP [dm6]	T	A	1.607e^-4	0.982	INTRON rut
3L	5821413	3L_5821413_SNP [dm3] 3L_5828313_SNP [dm6]	C	G	1.608e^-4	0.982	INTRON vn
2R	6002810	2R_6002810_SNP [dm3] 2R_10115305_SNP [dm6]	A	C	1.627e^-4	0.982	INTRON Pfk	TF binding site mE1_TFBS_cad
3L	1748494	3L_1748494_SNP [dm3] 3L_1748494_SNP [dm6]	G	A	1.630e^-4	0.982	UTR_5_PRIME CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3687342	3L_3687342_SNP [dm3] 3L_3687342_SNP [dm6]	G	A	1.635e^-4	0.982	INTERGENIC
3R	10495515	3R_10495515_SNP [dm3] 3R_14669793_SNP [dm6]	G	T	1.642e^-4	0.982	SYNONYMOUS_CODING Meltrin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1644332	2L_1644332_SNP [dm3] 2L_1644332_SNP [dm6]	C	A	1.649e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
X	7915972	X_7915972_SNP [dm3] X_8021939_SNP [dm6]	C	T	1.651e^-4	0.982	UPSTREAM CG15333 INTRON Tbh
X	2223170	X_2223170_SNP [dm3] X_2329137_SNP [dm6]	G	T	1.652e^-4	0.982	DOWNSTREAM CG2854 INTRON phl
X	4813890	X_4813890_SNP [dm3] X_4919857_SNP [dm6]	A	G	1.656e^-4	0.982	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16615946	X_16615946_SNP [dm3] X_16721913_SNP [dm6]	T	C	1.658e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
2R	3401027	2R_3401027_DEL [dm3] 2R_7513522_DEL [dm6]	ATA	A	1.661e^-4	0.982	UPSTREAM az2 DOWNSTREAM CG1603 INTERGENIC	transposable element FlyBase
3L	22960178	3L_22960178_SNP [dm3] 3L_22967078_SNP [dm6]	A	G	1.668e^-4	0.982	INTERGENIC
3L	12313365	3L_12313365_SNP [dm3] 3L_12320265_SNP [dm6]	T	G	1.669e^-4	0.982	INTERGENIC
2L	9261590	2L_9261590_SNP [dm3] 2L_9261590_SNP [dm6]	T	A	1.670e^-4	0.982	DOWNSTREAM CR45262 INTRON Ggamma30A
2R	11436868	2R_11436868_SNP [dm3] 2R_15549363_SNP [dm6]	C	T	1.678e^-4	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	11060414	3R_11060414_SNP [dm3] 3R_15234692_SNP [dm6]	G	A	1.693e^-4	0.982	SYNONYMOUS_CODING tefu	TF binding site BDTNP1_TFBS_twi
X	18983924	X_18983924_SNP [dm3] X_19089891_SNP [dm6]	G	A	1.695e^-4	0.982	INTERGENIC
2R	16948535	2R_16948535_SNP [dm3] 2R_21061030_SNP [dm6]	C	T	1.701e^-4	0.982	UPSTREAM CG15653 & 1 other INTRON mRpL54	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14203118	3R_14203118_SNP [dm3] 3R_18377396_SNP [dm6]	C	A	1.702e^-4	0.982	DOWNSTREAM CR44946 & 1 other INTERGENIC
3L	14538584	3L_14538584_DEL [dm3] 3L_14545484_DEL [dm6]	GCCTCGTTTTGTG...	G	1.704e^-4	0.982	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	6498250	3L_6498250_SNP [dm3] 3L_6505150_SNP [dm6]	T	A	1.711e^-4	0.982	INTRON sfl
3L	9902135	3L_9902135_INS [dm3] 3L_9909035_INS [dm6]	T	TTGT	1.720e^-4	0.982	INTRON CG34356
X	15731365	X_15731365_SNP [dm3] X_15837332_SNP [dm6]	T	C	1.722e^-4	0.982	UPSTREAM CG8565 DOWNSTREAM CG32582 INTERGENIC
X	18982601	X_18982601_SNP [dm3] X_19088568_SNP [dm6]	G	T	1.729e^-4	0.982	INTERGENIC
3R	25807946	3R_25807946_SNP [dm3] 3R_29982224_SNP [dm6]	C	A	1.731e^-4	0.982	INTERGENIC
2R	7843816	2R_7843816_SNP [dm3] 2R_11956311_SNP [dm6]	C	T	1.750e^-4	0.982	INTRON CG13188
3L	6307135	3L_6307135_SNP [dm3] 3L_6314035_SNP [dm6]	A	G	1.756e^-4	0.982	INTERGENIC
3L	18269881	3L_18269881_SNP [dm3] 3L_18276781_SNP [dm6]	T	C	1.758e^-4	0.982	INTERGENIC
2L	16213343	2L_16213343_SNP [dm3] 2L_16213343_SNP [dm6]	T	G	1.761e^-4	0.982	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16582408	2L_16582408_SNP [dm3] 2L_16582408_SNP [dm6]	C	T	1.761e^-4	0.982	INTRON CG42389	TF binding site mE1_TFBS_bab1
X	18982699	X_18982699_SNP [dm3] X_19088666_SNP [dm6]	C	A	1.770e^-4	0.982	INTERGENIC
3R	23255563	3R_23255563_DEL [dm3] 3R_27429841_DEL [dm6]	CACCCCTCACTTC...	C	1.774e^-4	0.982	INTRON side
X	18229378	X_18229378_SNP [dm3] X_18335345_SNP [dm6]	G	A	1.777e^-4	0.982	INTRON CG6123
2R	6017772	2R_6017772_SNP [dm3] 2R_10130267_SNP [dm6]	T	C	1.779e^-4	0.982	INTRON gem
X	5396179	X_5396179_SNP [dm3] X_5502146_SNP [dm6]	C	T	1.784e^-4	0.982	SYNONYMOUS_CODING CG4151 UPSTREAM CG32762	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4958449	2R_4958449_INS [dm3] 2R_9070944_INS [dm6]	C	CTGCAACGCAC...	1.789e^-4	0.982	INTRON ana	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_Med mE1_TFBS_cad
2R	16946723	2R_16946723_SNP [dm3] 2R_21059218_SNP [dm6]	C	G	1.797e^-4	0.982	UTR_3_PRIME cpa DOWNSTREAM CG15653
2L	2419480	2L_2419480_SNP [dm3] 2L_2419480_SNP [dm6]	G	A	1.806e^-4	0.982	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
X	18927775	X_18927775_SNP [dm3] X_19033742_SNP [dm6]	T	A	1.814e^-4	0.982	INTERGENIC
2R	9449610	2R_9449610_SNP [dm3] 2R_13562105_SNP [dm6]	C	T	1.825e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3R	16181764	3R_16181764_SNP [dm3] 3R_20356042_SNP [dm6]	A	T	1.832e^-4	0.982	INTERGENIC
2R	14666181	2R_14666181_SNP [dm3] 2R_18778676_SNP [dm6]	G	A	1.841e^-4	0.982	INTERGENIC
3L	12878688	3L_12878688_SNP [dm3] 3L_12885588_SNP [dm6]	A	T	1.842e^-4	0.982	SYNONYMOUS_CODING CG14120	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	11439644	3R_11439644_SNP [dm3] 3R_15613922_SNP [dm6]	C	T	1.843e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	10628050	3L_10628050_SNP [dm3] 3L_10634950_SNP [dm6]	G	T	1.847e^-4	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM hay & 1 other	TF binding site mE1_TFBS_sens
3L	10071791	3L_10071791_SNP [dm3] 3L_10078691_SNP [dm6]	T	C	1.847e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
3R	16181820	3R_16181820_INS [dm3] 3R_20356098_INS [dm6]	T	TTTTT	1.847e^-4	0.982	INTERGENIC
3L	22480779	3L_22480779_SNP [dm3] 3L_22487679_SNP [dm6]	G	A	1.848e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2958668	2L_2958668_SNP [dm3] 2L_2958668_SNP [dm6]	C	T	1.852e^-4	0.982	UPSTREAM Rbp9 INTRON Rbp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	23436446	3R_23436446_SNP [dm3] 3R_27610724_SNP [dm6]	C	A	1.869e^-4	0.982	INTRON Tusp
2R	9177836	2R_9177836_MNP [dm3] 2R_13290331_MNP [dm6]	TGAA	ACGC	1.876e^-4	0.982	INTRON Dh31-R
2L	13580820	2L_13580820_SNP [dm3] 2L_13580820_SNP [dm6]	T	A	1.877e^-4	0.982	INTRON kuz
3R	11416243	3R_11416243_SNP [dm3] 3R_15590521_SNP [dm6]	G	A	1.880e^-4	0.982	INTERGENIC
2R	7755962	2R_7755962_SNP [dm3] 2R_11868457_SNP [dm6]	C	T	1.884e^-4	0.982	SYNONYMOUS_CODING CG13185 DOWNSTREAM CR42532	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3413865	3R_3413865_SNP [dm3] 3R_7588143_SNP [dm6]	G	A	1.887e^-4	0.982	INTRON CG34127
3R	16181733	3R_16181733_SNP [dm3] 3R_20356011_SNP [dm6]	T	C	1.888e^-4	0.982	INTERGENIC
2L	1620913	2L_1620913_SNP [dm3] 2L_1620913_SNP [dm6]	G	A	1.897e^-4	0.982	EXON CR44603	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11439716	3R_11439716_SNP [dm3] 3R_15613994_SNP [dm6]	A	G	1.898e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	18582037	2R_18582037_SNP [dm3] 2R_22694532_SNP [dm6]	A	G	1.917e^-4	0.982	UTR_3_PRIME robo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11521201	3R_11521201_SNP [dm3] 3R_15695479_SNP [dm6]	T	C	1.927e^-4	0.982	INTRON CG5399
X	10049119	X_10049119_SNP [dm3] X_10155086_SNP [dm6]	A	G	1.932e^-4	0.982	DOWNSTREAM CG12645 INTRON CR44894
2R	19924298	2R_19924298_SNP [dm3] 2R_24036775_SNP [dm6]	C	A	1.935e^-4	0.982	UTR_3_PRIME Not11 DOWNSTREAM MAN1	TF binding site mE1_TFBS_sens
X	14686920	X_14686920_MNP [dm3] X_14792887_MNP [dm6]	TTG	CAC	1.936e^-4	0.982	INTRON rut
2L	16213061	2L_16213061_SNP [dm3] 2L_16213061_SNP [dm6]	G	A	1.942e^-4	0.982	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
2R	4498720	2R_4498720_SNP [dm3] 2R_8611215_SNP [dm6]	T	A	1.944e^-4	0.982	UTR_3_PRIME rgr DOWNSTREAM CG8642
3L	10071734	3L_10071734_SNP [dm3] 3L_10078634_SNP [dm6]	C	A	1.945e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
3L	10071765	3L_10071765_SNP [dm3] 3L_10078665_SNP [dm6]	T	A	1.945e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
3R	14203557	3R_14203557_DEL [dm3] 3R_18377835_DEL [dm6]	GTGA	G	1.947e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
2R	3583506	2R_3583506_SNP [dm3] 2R_7696001_SNP [dm6]	A	T	1.970e^-4	0.982	UPSTREAM CG1399 INTRON CG1399
2R	11785828	2R_11785828_SNP [dm3] 2R_15898323_SNP [dm6]	T	G	1.970e^-4	0.982	INTRON sli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13726505	2L_13726505_SNP [dm3] 2L_13726505_SNP [dm6]	G	T	1.981e^-4	0.982	INTERGENIC
3R	14203179	3R_14203179_SNP [dm3] 3R_18377457_SNP [dm6]	T	C	1.988e^-4	0.982	DOWNSTREAM CR44946 & 1 other INTERGENIC
3L	1272462	3L_1272462_SNP [dm3] 3L_1272462_SNP [dm6]	C	A	1.994e^-4	0.982	INTRON CG9134	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16615909	X_16615909_SNP [dm3] X_16721876_SNP [dm6]	C	T	1.996e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	15353158	3R_15353158_SNP [dm3] 3R_19527436_SNP [dm6]	A	G	2.000e^-4	0.982	INTRON Dys
2L	19885070	2L_19885070_SNP [dm3] 2L_19885070_SNP [dm6]	A	T	2.001e^-4	0.982	INTRON sick
3L	18870055	3L_18870055_SNP [dm3] 3L_18876955_SNP [dm6]	T	C	2.010e^-4	0.982	SYNONYMOUS_CODING Ugt
2L	5027949	2L_5027949_SNP [dm3] 2L_5027949_SNP [dm6]	G	A	2.013e^-4	0.982	UPSTREAM vkg INTRON vkg	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10071723	3L_10071723_SNP [dm3] 3L_10078623_SNP [dm6]	G	A	2.017e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
X	12872578	X_12872578_SNP [dm3] X_12978545_SNP [dm6]	C	T	2.021e^-4	0.982	INTERGENIC
3R	16181746	3R_16181746_SNP [dm3] 3R_20356024_SNP [dm6]	T	G	2.026e^-4	0.982	INTERGENIC
3L	10836577	3L_10836577_DEL [dm3] 3L_10843477_DEL [dm6]	TTGTC	AGA	2.028e^-4	0.982	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8715415	2R_8715415_SNP [dm3] 2R_12827910_SNP [dm6]	G	T	2.035e^-4	0.982	INTERGENIC
2L	20769978	2L_20769978_SNP [dm3] 2L_20769978_SNP [dm6]	C	G	2.036e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	5971571	2R_5971571_SNP [dm3] 2R_10084066_SNP [dm6]	C	A	2.037e^-4	0.982	UTR_3_PRIME egr
2R	5971572	2R_5971572_SNP [dm3] 2R_10084067_SNP [dm6]	A	T	2.037e^-4	0.982	UTR_3_PRIME egr
X	22231583	X_22231583_SNP [dm3] X_22829747_SNP [dm6]	G	T	2.042e^-4	0.982	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	6711627	3L_6711627_SNP [dm3] 3L_6718527_SNP [dm6]	C	A	2.054e^-4	0.982	INTRON ple
X	4493287	X_4493287_SNP [dm3] X_4599254_SNP [dm6]	C	T	2.074e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
2L	3979400	2L_3979400_SNP [dm3] 2L_3979400_SNP [dm6]	G	T	2.075e^-4	0.982	INTRON fred
3L	12312564	3L_12312564_DEL [dm3] 3L_12319464_DEL [dm6]	TT	T	2.079e^-4	0.982	INTERGENIC
3L	6498271	3L_6498271_SNP [dm3] 3L_6505171_SNP [dm6]	A	C	2.079e^-4	0.982	INTRON sfl
2L	2597572	2L_2597572_SNP [dm3] 2L_2597572_SNP [dm6]	A	G	2.080e^-4	0.982	INTERGENIC
2L	14999409	2L_14999409_SNP [dm3] 2L_14999409_SNP [dm6]	A	G	2.085e^-4	0.982	INTERGENIC
2L	7839400	2L_7839400_SNP [dm3] 2L_7839400_SNP [dm6]	A	G	2.085e^-4	0.982	DOWNSTREAM CR43100 INTERGENIC
2R	16946332	2R_16946332_SNP [dm3] 2R_21058827_SNP [dm6]	A	G	2.090e^-4	0.982	SYNONYMOUS_CODING cpa DOWNSTREAM CG15653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	4506005	3L_4506005_SNP [dm3] 3L_4506005_SNP [dm6]	A	G	2.104e^-4	0.982	INTRON NT1
X	18931718	X_18931718_SNP [dm3] X_19037685_SNP [dm6]	G	T	2.104e^-4	0.982	INTERGENIC
3R	23446578	3R_23446578_SNP [dm3] 3R_27620856_SNP [dm6]	G	C	2.108e^-4	0.982	INTRON Tusp
3R	16181807	3R_16181807_SNP [dm3] 3R_20356085_SNP [dm6]	A	C	2.109e^-4	0.982	INTERGENIC
2L	16213043	2L_16213043_SNP [dm3] 2L_16213043_SNP [dm6]	A	T	2.123e^-4	0.982	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
2R	6000069	2R_6000069_DEL [dm3] 2R_10112564_DEL [dm6]	ACCAAA	T	2.123e^-4	0.982	INTRON Pfk
2L	16213854	2L_16213854_SNP [dm3] 2L_16213854_SNP [dm6]	A	G	2.125e^-4	0.982	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12382206	2R_12382206_DEL [dm3] 2R_16494701_DEL [dm6]	ACAACTTTTCTGTTA...	A	2.129e^-4	0.982	INTERGENIC
3L	10071759	3L_10071759_SNP [dm3] 3L_10078659_SNP [dm6]	C	A	2.133e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
3L	18875379	3L_18875379_SNP [dm3] 3L_18882279_SNP [dm6]	A	T	2.139e^-4	0.982	INTRON CG3961
2R	5997790	2R_5997790_SNP [dm3] 2R_10110285_SNP [dm6]	T	G	2.141e^-4	0.982	NON_SYNONYMOUS_CODING Pfk UPSTREAM Pfk DOWNSTREAM 14-3-3zeta
3R	24978557	3R_24978557_SNP [dm3] 3R_29152835_SNP [dm6]	C	A	2.145e^-4	0.982	NON_SYNONYMOUS_CODING Slbp UPSTREAM Rpn2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16117855	2R_16117855_SNP [dm3] 2R_20230350_SNP [dm6]	T	C	2.145e^-4	0.982	DOWNSTREAM tRNA:G3:56EFa INTERGENIC
2R	19924309	2R_19924309_SNP [dm3] 2R_24036786_SNP [dm6]	C	T	2.149e^-4	0.982	SYNONYMOUS_CODING Not11 DOWNSTREAM MAN1	TF binding site mE1_TFBS_sens
3R	11443571	3R_11443571_SNP [dm3] 3R_15617849_SNP [dm6]	A	G	2.195e^-4	0.982	INTERGENIC
3L	6689709	3L_6689709_SNP [dm3] 3L_6696609_SNP [dm6]	A	G	2.203e^-4	0.982	INTRON SP1173
2R	16948886	2R_16948886_SNP [dm3] 2R_21061381_SNP [dm6]	C	T	2.215e^-4	0.982	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site mE1_TFBS_sens
X	18982564	X_18982564_SNP [dm3] X_19088531_SNP [dm6]	C	T	2.215e^-4	0.982	INTERGENIC
X	19503105	X_19503105_SNP [dm3] X_19609072_SNP [dm6]	T	A	2.221e^-4	0.982	INTRON CG14207	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8942169	2R_8942169_SNP [dm3] 2R_13054664_SNP [dm6]	G	A	2.238e^-4	0.982	DOWNSTREAM Drl-2 INTERGENIC
3L	6684864	3L_6684864_SNP [dm3] 3L_6691764_SNP [dm6]	C	A	2.239e^-4	0.982	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6738682	2L_6738682_SNP [dm3] 2L_6738682_SNP [dm6]	A	G	2.240e^-4	0.982	INTRON TTLL3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13714830	3R_13714830_SNP [dm3] 3R_17889108_SNP [dm6]	G	C	2.256e^-4	0.982	INTRON Rim
2L	8171453	2L_8171453_SNP [dm3] 2L_8171453_SNP [dm6]	T	G	2.259e^-4	0.982	INTRON Piezo
3L	4505992	3L_4505992_SNP [dm3] 3L_4505992_SNP [dm6]	T	C	2.262e^-4	0.982	INTRON NT1
2L	20138678	2L_20138678_SNP [dm3] 2L_20138678_SNP [dm6]	C	A	2.262e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18879339	X_18879339_SNP [dm3] X_18985306_SNP [dm6]	T	C	2.263e^-4	0.982	INTRON CG43759
2L	4311371	2L_4311371_SNP [dm3] 2L_4311371_SNP [dm6]	A	C	2.265e^-4	0.982	INTRON tutl
2R	6895183	2R_6895183_SNP [dm3] 2R_11007678_SNP [dm6]	A	G	2.265e^-4	0.982	INTRON luna
2R	9177811	2R_9177811_SNP [dm3] 2R_13290306_SNP [dm6]	G	T	2.267e^-4	0.982	INTRON Dh31-R
2R	9177812	2R_9177812_SNP [dm3] 2R_13290307_SNP [dm6]	A	T	2.267e^-4	0.982	INTRON Dh31-R
X	10982579	X_10982579_SNP [dm3] X_11088546_SNP [dm6]	C	T	2.270e^-4	0.982	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
3L	10836603	3L_10836603_SNP [dm3] 3L_10843503_SNP [dm6]	A	T	2.271e^-4	0.982	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6712251	X_6712251_SNP [dm3] X_6818218_SNP [dm6]	T	G	2.281e^-4	0.982	UTR_3_PRIME Nf-YC DOWNSTREAM iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2578395	3L_2578395_SNP [dm3] 3L_2578395_SNP [dm6]	G	A	2.282e^-4	0.982	INTRON msn
2R	14665587	2R_14665587_SNP [dm3] 2R_18778082_SNP [dm6]	A	T	2.285e^-4	0.982	DOWNSTREAM CR43964 INTERGENIC
3L	9204539	3L_9204539_SNP [dm3] 3L_9211439_SNP [dm6]	G	T	2.287e^-4	0.982	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	10979968	2R_10979968_SNP [dm3] 2R_15092463_SNP [dm6]	G	A	2.290e^-4	0.982	DOWNSTREAM CR44457 INTERGENIC
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	2.297e^-4	0.982	INTRON Octbeta2R
3L	5264375	3L_5264375_SNP [dm3] 3L_5271275_SNP [dm6]	T	A	2.300e^-4	0.982	INTRON shep
2L	13476928	2L_13476928_SNP [dm3] 2L_13476928_SNP [dm6]	C	T	2.301e^-4	0.982	INTRON CG42784
3L	4579796	3L_4579796_SNP [dm3] 3L_4579796_SNP [dm6]	T	C	2.311e^-4	0.982	INTRON CG42540
3R	10963512	3R_10963512_SNP [dm3] 3R_15137790_SNP [dm6]	C	G	2.345e^-4	0.982	NON_SYNONYMOUS_CODING CG3984 UPSTREAM CG6912 EXON CR45600	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	9286343	X_9286343_SNP [dm3] X_9392310_SNP [dm6]	C	T	2.347e^-4	0.982	INTRON mgl
2L	5707354	2L_5707354_SNP [dm3] 2L_5707354_SNP [dm6]	A	G	2.351e^-4	0.982	INTRON CG7236
X	21457457	X_21457457_SNP [dm3] X_21586430_SNP [dm6]	C	A	2.351e^-4	0.982	INTERGENIC
3L	6498268	3L_6498268_SNP [dm3] 3L_6505168_SNP [dm6]	C	T	2.360e^-4	0.982	INTRON sfl
X	16615953	X_16615953_SNP [dm3] X_16721920_SNP [dm6]	A	C	2.379e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3L	4505889	3L_4505889_SNP [dm3] 3L_4505889_SNP [dm6]	T	A	2.384e^-4	0.982	UTR_5_PRIME NT1
2R	19706227	2R_19706227_SNP [dm3] 2R_23818704_SNP [dm6]	T	C	2.386e^-4	0.982	UPSTREAM CG4797 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	16100608	2R_16100608_SNP [dm3] 2R_20213103_SNP [dm6]	A	G	2.391e^-4	0.982	UPSTREAM CG16894 INTERGENIC
2R	1620804	2R_1620804_SNP [dm3] 2R_5733299_SNP [dm6]	C	T	2.401e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	6543909	X_6543909_SNP [dm3] X_6649876_SNP [dm6]	C	T	2.402e^-4	0.982	SYNONYMOUS_CODING pigs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15637840	3R_15637840_SNP [dm3] 3R_19812118_SNP [dm6]	C	T	2.404e^-4	0.982	INTRON bnl
2R	16131913	2R_16131913_SNP [dm3] 2R_20244408_SNP [dm6]	G	A	2.407e^-4	0.982	SYNONYMOUS_CODING CG11208	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	6500867	3L_6500867_SNP [dm3] 3L_6507767_SNP [dm6]	C	G	2.411e^-4	0.982	INTRON sfl
3L	10631889	3L_10631889_SNP [dm3] 3L_10638789_SNP [dm6]	C	T	2.412e^-4	0.982	UPSTREAM E_z_ & 1 other INTRON CG8009
2R	6017648	2R_6017648_SNP [dm3] 2R_10130143_SNP [dm6]	T	C	2.419e^-4	0.982	INTRON gem
2R	19924245	2R_19924245_SNP [dm3] 2R_24036722_SNP [dm6]	C	T	2.432e^-4	0.982	UTR_3_PRIME Not11 DOWNSTREAM MAN1	TF binding site mE1_TFBS_sens
3L	19516521	3L_19516521_SNP [dm3] 3L_19523421_SNP [dm6]	C	T	2.436e^-4	0.982	INTRON Cpr76Bc
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	2.438e^-4	0.982	INTERGENIC
X	18993340	X_18993340_SNP [dm3] X_19099307_SNP [dm6]	T	G	2.441e^-4	0.982	INTERGENIC
2L	15800329	2L_15800329_SNP [dm3] 2L_15800329_SNP [dm6]	G	A	2.444e^-4	0.982	INTERGENIC
2L	541453	2L_541453_SNP [dm3] 2L_541453_SNP [dm6]	T	G	2.447e^-4	0.982	UTR_3_PRIME lwr DOWNSTREAM ush INTRON lwr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
X	4478018	X_4478018_SNP [dm3] X_4583985_SNP [dm6]	A	G	2.450e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1719600	2L_1719600_INS [dm3] 2L_1719600_INS [dm6]	T	TCTAGT	2.450e^-4	0.982	INTRON Rim2
X	16615937	X_16615937_DEL [dm3] X_16721904_DEL [dm6]	TAACG	T	2.453e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	11530028	3R_11530028_SNP [dm3] 3R_15704306_SNP [dm6]	G	A	2.455e^-4	0.982	UPSTREAM CG5404 INTERGENIC
2L	10479010	2L_10479010_SNP [dm3] 2L_10479010_SNP [dm6]	T	A	2.460e^-4	0.982	INTRON RluA-2
2L	18390516	2L_18390516_DEL [dm3] 2L_18390516_DEL [dm6]	TT	T	2.463e^-4	0.982	UTR_3_PRIME Fas3 INTRON Fas3
2L	4748792	2L_4748792_SNP [dm3] 2L_4748792_SNP [dm6]	C	T	2.465e^-4	0.982	INTRON CG15630
2R	5347987	2R_5347987_SNP [dm3] 2R_9460482_SNP [dm6]	G	T	2.475e^-4	0.982	INTRON Camta
X	6255288	X_6255288_SNP [dm3] X_6361255_SNP [dm6]	C	T	2.499e^-4	0.982	UTR_3_PRIME kdn DOWNSTREAM swaPsi
3L	7123071	3L_7123071_SNP [dm3] 3L_7129971_SNP [dm6]	A	G	2.510e^-4	0.982	UPSTREAM CG8628 DOWNSTREAM CG15829 INTERGENIC
2R	15825313	2R_15825313_SNP [dm3] 2R_19937808_SNP [dm6]	G	A	2.518e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1813473	2R_1813473_SNP [dm3] 2R_5925968_SNP [dm6]	T	G	2.522e^-4	0.982	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13746388	2R_13746388_SNP [dm3] 2R_17858883_SNP [dm6]	C	T	2.527e^-4	0.982	INTRON olf186-F
3R	14444206	3R_14444206_SNP [dm3] 3R_18618484_SNP [dm6]	G	T	2.533e^-4	0.982	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6645510	3R_6645510_SNP [dm3] 3R_10819788_SNP [dm6]	G	C	2.534e^-4	0.982	INTERGENIC
2L	3465546	2L_3465546_SNP [dm3] 2L_3465546_SNP [dm6]	G	T	2.537e^-4	0.982	NON_SYNONYMOUS_CODING msl-2 UPSTREAM Pdsw	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19172186	X_19172186_SNP [dm3] X_19278153_SNP [dm6]	T	A	2.549e^-4	0.982	INTRON CG8028
3R	24363961	3R_24363961_SNP [dm3] 3R_28538239_SNP [dm6]	A	T	2.568e^-4	0.982	INTRON Ppn
2L	2372462	2L_2372462_SNP [dm3] 2L_2372462_SNP [dm6]	G	T	2.583e^-4	0.982	UTR_3_PRIME CG3609 UPSTREAM CG3597	TF binding site mE1_TFBS_cad
2L	8499638	2L_8499638_SNP [dm3] 2L_8499638_SNP [dm6]	G	A	2.595e^-4	0.982	INTRON Dh31
2R	8713262	2R_8713262_SNP [dm3] 2R_12825757_SNP [dm6]	T	C	2.596e^-4	0.982	INTERGENIC
2L	7052043	2L_7052043_SNP [dm3] 2L_7052043_SNP [dm6]	G	C	2.617e^-4	0.982	SYNONYMOUS_CODING milt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16181755	3R_16181755_SNP [dm3] 3R_20356033_SNP [dm6]	A	G	2.624e^-4	0.982	INTERGENIC
3R	25221802	3R_25221802_SNP [dm3] 3R_29396080_SNP [dm6]	T	C	2.631e^-4	0.982	INTRON Ptp99A
X	16624715	X_16624715_SNP [dm3] X_16730682_SNP [dm6]	G	A	2.633e^-4	0.982	UPSTREAM TwdlX INTRON CG9634
3L	9204650	3L_9204650_SNP [dm3] 3L_9211550_SNP [dm6]	T	G	2.635e^-4	0.982	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	6342163	3L_6342163_SNP [dm3] 3L_6349063_SNP [dm6]	G	C	2.653e^-4	0.982	INTRON CG13300	TF binding site BDTNP1_TFBS_z
3R	23460856	3R_23460856_SNP [dm3] 3R_27635134_SNP [dm6]	T	A	2.680e^-4	0.982	DOWNSTREAM Tusp INTRON CG5611	TF binding site mE1_TFBS_HSA
X	20896888	X_20896888_DEL [dm3] X_21025861_DEL [dm6]	AA	A	2.682e^-4	0.982	UTR_5_PRIME r-cup DOWNSTREAM CG1532
X	10116507	X_10116507_SNP [dm3] X_10222474_SNP [dm6]	G	C	2.685e^-4	0.982	SYNONYMOUS_CODING CG34408 UPSTREAM CG34408
3L	4130115	3L_4130115_SNP [dm3] 3L_4130115_SNP [dm6]	G	A	2.685e^-4	0.982	INTRON ens
3L	3999192	3L_3999192_SNP [dm3] 3L_3999192_SNP [dm6]	C	T	2.691e^-4	0.982	INTERGENIC
2R	19716887	2R_19716887_SNP [dm3] 2R_23829364_SNP [dm6]	A	T	2.692e^-4	0.982	INTRON CG5549
X	16615945	X_16615945_SNP [dm3] X_16721912_SNP [dm6]	A	T	2.693e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	25530476	3R_25530476_SNP [dm3] 3R_29704754_SNP [dm6]	G	T	2.693e^-4	0.982	INTERGENIC
2R	6084117	2R_6084117_SNP [dm3] 2R_10196612_SNP [dm6]	G	C	2.694e^-4	0.982	DOWNSTREAM CG34221 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3038788	3L_3038788_SNP [dm3] 3L_3038788_SNP [dm6]	C	T	2.698e^-4	0.982	SYNONYMOUS_CODING CG2162	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11003985	X_11003985_SNP [dm3] X_11109952_SNP [dm6]	T	G	2.710e^-4	0.982	INTRON Hsp60	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	8817850	2L_8817850_SNP [dm3] 2L_8817850_SNP [dm6]	C	T	2.715e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	12321676	3L_12321676_SNP [dm3] 3L_12328576_SNP [dm6]	G	A	2.719e^-4	0.982	UPSTREAM CG32105 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	22227028	X_22227028_SNP [dm3] X_22825192_SNP [dm6]	C	A	2.724e^-4	0.982	UTR_3_PRIME fog DOWNSTREAM fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	19895418	2L_19895418_SNP [dm3] 2L_19895418_SNP [dm6]	G	A	2.727e^-4	0.982	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
3L	10071756	3L_10071756_SNP [dm3] 3L_10078656_SNP [dm6]	T	C	2.735e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
3L	13984043	3L_13984043_SNP [dm3] 3L_13990943_SNP [dm6]	G	C	2.744e^-4	0.982	INTRON CG17364
X	4799615	X_4799615_SNP [dm3] X_4905582_SNP [dm6]	T	G	2.746e^-4	0.982	UTR_3_PRIME CG42594
2L	20769944	2L_20769944_SNP [dm3] 2L_20769944_SNP [dm6]	A	G	2.748e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10469461	2L_10469461_SNP [dm3] 2L_10469461_SNP [dm6]	C	G	2.751e^-4	0.982	INTRON RluA-1
X	18984050	X_18984050_SNP [dm3] X_19090017_SNP [dm6]	G	A	2.752e^-4	0.982	INTERGENIC
2L	6247256	2L_6247256_SNP [dm3] 2L_6247256_SNP [dm6]	T	C	2.759e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19228162	2R_19228162_SNP [dm3] 2R_23340639_SNP [dm6]	G	C	2.760e^-4	0.982	INTERGENIC
3L	20912455	3L_20912455_SNP [dm3] 3L_20919355_SNP [dm6]	G	A	2.769e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20912594	3L_20912594_DEL [dm3] 3L_20919494_DEL [dm6]	TGTTTGAGCAAATTTTCTGC...	T	2.769e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12382243	2R_12382243_SNP [dm3] 2R_16494738_SNP [dm6]	A	T	2.769e^-4	0.982	INTERGENIC
3L	7138564	3L_7138564_SNP [dm3] 3L_7145464_SNP [dm6]	A	G	2.777e^-4	0.982	SYNONYMOUS_CODING corn
2R	1620588	2R_1620588_SNP [dm3] 2R_5733083_SNP [dm6]	G	A	2.777e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13724913	3R_13724913_SNP [dm3] 3R_17899191_SNP [dm6]	C	A	2.794e^-4	0.982	INTRON Rim
X	22228002	X_22228002_DEL [dm3] X_22826166_DEL [dm6]	TTTTGCATT	T	2.797e^-4	0.982	UTR_3_PRIME fog
X	19185002	X_19185002_SNP [dm3] X_19290969_SNP [dm6]	G	C	2.806e^-4	0.982	INTRON CG8034
3L	4083582	3L_4083582_SNP [dm3] 3L_4083582_SNP [dm6]	G	A	2.820e^-4	0.982	INTRON Gad1
3L	6680787	3L_6680787_SNP [dm3] 3L_6687687_SNP [dm6]	G	A	2.824e^-4	0.982	INTERGENIC
2L	10030532	2L_10030532_SNP [dm3] 2L_10030532_SNP [dm6]	C	T	2.826e^-4	0.982	INTERGENIC
3L	8912342	3L_8912342_SNP [dm3] 3L_8919242_SNP [dm6]	G	C	2.840e^-4	0.982	INTRON Tsp66E
3L	4488812	3L_4488812_INS [dm3] 3L_4488812_INS [dm6]	T	TCTT	2.840e^-4	0.982	INTRON CG13722
X	10083364	X_10083364_SNP [dm3] X_10189331_SNP [dm6]	C	A	2.841e^-4	0.982	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
X	5057537	X_5057537_DEL [dm3] X_5163504_DEL [dm6]	TGTATCATTC	A	2.842e^-4	0.982	INTRON rg & 1 other
2L	6038075	2L_6038075_DEL [dm3] 2L_6038075_DEL [dm6]	GT	G	2.844e^-4	0.982	UPSTREAM CG31643 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	17542912	2R_17542912_SNP [dm3] 2R_21655407_SNP [dm6]	C	T	2.848e^-4	0.982	SYNONYMOUS_CODING CG10082 DOWNSTREAM CR43786	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15926648	2R_15926648_SNP [dm3] 2R_20039143_SNP [dm6]	T	G	2.854e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11425306	3R_11425306_SNP [dm3] 3R_15599584_SNP [dm6]	G	C	2.855e^-4	0.982	INTERGENIC
3L	21265546	3L_21265546_SNP [dm3] 3L_21272446_SNP [dm6]	A	T	2.862e^-4	0.982	INTRON AcCoAS
2R	18061084	2R_18061084_SNP [dm3] 2R_22173579_SNP [dm6]	G	T	2.865e^-4	0.982	DOWNSTREAM a INTRON CG3045	TF binding site mE1_TFBS_sens
X	4478035	X_4478035_SNP [dm3] X_4584002_SNP [dm6]	T	A	2.867e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10126684	3R_10126684_SNP [dm3] 3R_14300962_SNP [dm6]	T	C	2.875e^-4	0.982	SYNONYMOUS_CODING CG12207	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	20107550	2R_20107550_SNP [dm3] 2R_24220027_SNP [dm6]	C	T	2.879e^-4	0.982	INTRON CG30419
3R	11037553	3R_11037553_SNP [dm3] 3R_15211831_SNP [dm6]	C	A	2.886e^-4	0.982	SYNONYMOUS_CODING CG6654 DOWNSTREAM CG4203	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	15235607	2R_15235607_SNP [dm3] 2R_19348102_SNP [dm6]	G	A	2.886e^-4	0.982	INTRON Rgk1
3R	23882032	3R_23882032_SNP [dm3] 3R_28056310_SNP [dm6]	G	T	2.891e^-4	0.982	INTRON CG34362
3R	25401884	3R_25401884_SNP [dm3] 3R_29576162_SNP [dm6]	A	G	2.894e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	21224724	3L_21224724_SNP [dm3] 3L_21231624_SNP [dm6]	G	A	2.918e^-4	0.982	INTRON Eip78C
3L	7124136	3L_7124136_SNP [dm3] 3L_7131036_SNP [dm6]	A	C	2.925e^-4	0.982	UPSTREAM Dbi INTRON CG8628
X	5847264	X_5847264_SNP [dm3] X_5953231_SNP [dm6]	G	T	2.936e^-4	0.982	NON_SYNONYMOUS_CODING CG6048
2L	2419507	2L_2419507_SNP [dm3] 2L_2419507_SNP [dm6]	A	G	2.948e^-4	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2419508	2L_2419508_DEL [dm3] 2L_2419508_DEL [dm6]	AC	A	2.948e^-4	0.982	INTRON CG34447	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15800300	2L_15800300_SNP [dm3] 2L_15800300_SNP [dm6]	C	G	2.954e^-4	0.982	INTERGENIC
3L	18878322	3L_18878322_SNP [dm3] 3L_18885222_SNP [dm6]	C	T	2.965e^-4	0.982	UPSTREAM CG3961 INTRON CG3961
X	2575181	X_2575181_SNP [dm3] X_2681148_SNP [dm6]	A	T	2.965e^-4	0.982	SYNONYMOUS_CODING HLH3B DOWNSTREAM CG2652	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16916902	3R_16916902_SNP [dm3] 3R_21091180_SNP [dm6]	A	T	2.980e^-4	0.982	INTRON RhoGAP93B & 1 other
3L	10074474	3L_10074474_INS [dm3] 3L_10081374_INS [dm6]	T	TA	2.981e^-4	0.982	INTRON dpr6
2L	9091485	2L_9091485_SNP [dm3] 2L_9091485_SNP [dm6]	T	A	2.988e^-4	0.982	INTERGENIC
3L	10793357	3L_10793357_SNP [dm3] 3L_10800257_SNP [dm6]	T	A	2.998e^-4	0.982	UPSTREAM CG12523 INTERGENIC
2R	12275127	2R_12275127_SNP [dm3] 2R_16387622_SNP [dm6]	A	G	3.003e^-4	0.982	INTRON Sema-2b	TF binding site BDTNP1_TFBS_Med
2R	11341623	2R_11341623_SNP [dm3] 2R_15454118_SNP [dm6]	A	C	3.005e^-4	0.982	INTRON CG43729
3R	18824637	3R_18824637_SNP [dm3] 3R_22998915_SNP [dm6]	C	T	3.011e^-4	0.982	UPSTREAM Nha2 INTERGENIC
X	6712611	X_6712611_SNP [dm3] X_6818578_SNP [dm6]	G	A	3.011e^-4	0.982	UTR_3_PRIME Nf-YC DOWNSTREAM iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11543338	3R_11543338_SNP [dm3] 3R_15717616_SNP [dm6]	C	T	3.021e^-4	0.982	INTERGENIC
3L	966326	3L_966326_SNP [dm3] 3L_966326_SNP [dm6]	A	T	3.022e^-4	0.982	INTRON Glut1
2R	7115057	2R_7115057_DEL [dm3] 2R_11227552_DEL [dm6]	AA	A	3.028e^-4	0.982	DOWNSTREAM CG7737 INTRON metro	TF binding site mE1_TFBS_cad
X	18983910	X_18983910_SNP [dm3] X_19089877_SNP [dm6]	A	T	3.049e^-4	0.982	INTERGENIC
3L	18910196	3L_18910196_SNP [dm3] 3L_18917096_SNP [dm6]	G	A	3.055e^-4	0.982	UPSTREAM CG6839 INTERGENIC
X	20903648	X_20903648_SNP [dm3] X_21032621_SNP [dm6]	A	C	3.059e^-4	0.982	UPSTREAM CG1529 INTERGENIC
2L	16174245	2L_16174245_SNP [dm3] 2L_16174245_SNP [dm6]	T	C	3.062e^-4	0.982	INTRON Ca-alpha1D
X	18423113	X_18423113_SNP [dm3] X_18529080_SNP [dm6]	C	G	3.068e^-4	0.982	SYNONYMOUS_CODING CG15047 UPSTREAM CG15042 INTRON Bx	TF binding site mE1_TFBS_chinmo
3R	18973568	3R_18973568_SNP [dm3] 3R_23147846_SNP [dm6]	G	A	3.073e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs
X	16615883	X_16615883_SNP [dm3] X_16721850_SNP [dm6]	T	C	3.075e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
2R	9775698	2R_9775698_SNP [dm3] 2R_13888193_SNP [dm6]	A	G	3.080e^-4	0.982	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	19870226	2L_19870226_SNP [dm3] 2L_19870226_SNP [dm6]	C	A	3.083e^-4	0.982	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	13580826	2L_13580826_SNP [dm3] 2L_13580826_SNP [dm6]	T	C	3.086e^-4	0.982	INTRON kuz
3L	18269191	3L_18269191_SNP [dm3] 3L_18276091_SNP [dm6]	G	T	3.098e^-4	0.982	INTERGENIC
X	22231644	X_22231644_SNP [dm3] X_22829808_SNP [dm6]	C	T	3.100e^-4	0.982	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	6308853	3L_6308853_SNP [dm3] 3L_6315753_SNP [dm6]	G	T	3.132e^-4	0.982	INTERGENIC
3R	11498891	3R_11498891_SNP [dm3] 3R_15673169_SNP [dm6]	C	T	3.144e^-4	0.982	INTRON pxb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13918284	2R_13918284_INS [dm3] 2R_18030779_INS [dm6]	A	AATACATACATA...	3.144e^-4	0.982	INTERGENIC
X	6521707	X_6521707_SNP [dm3] X_6627674_SNP [dm6]	G	A	3.151e^-4	0.982	INTRON pigs
X	4797323	X_4797323_INS [dm3] X_4903290_INS [dm6]	A	AA	3.153e^-4	0.982	INTRON CG42594
3R	26057580	3R_26057580_SNP [dm3] 3R_30231858_SNP [dm6]	C	G	3.153e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
3R	13714857	3R_13714857_SNP [dm3] 3R_17889135_SNP [dm6]	C	T	3.160e^-4	0.982	INTRON Rim
2L	10826445	2L_10826445_SNP [dm3] 2L_10826445_SNP [dm6]	A	G	3.161e^-4	0.982	INTRON Nos
2R	7734325	2R_7734325_SNP [dm3] 2R_11846820_SNP [dm6]	G	A	3.162e^-4	0.982	INTRON Sln
3R	10779056	3R_10779056_SNP [dm3] 3R_14953334_SNP [dm6]	A	G	3.165e^-4	0.982	INTERGENIC
2L	19799196	2L_19799196_SNP [dm3] 2L_19799196_SNP [dm6]	G	A	3.165e^-4	0.982	INTRON sick
3L	2551765	3L_2551765_SNP [dm3] 3L_2551765_SNP [dm6]	G	C	3.168e^-4	0.982	INTRON Spn
X	22231406	X_22231406_SNP [dm3] X_22829570_SNP [dm6]	C	A	3.172e^-4	0.982	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	10632128	3L_10632128_SNP [dm3] 3L_10639028_SNP [dm6]	A	C	3.179e^-4	0.982	UPSTREAM E_z_ & 1 other INTRON CG8009
2R	4498739	2R_4498739_SNP [dm3] 2R_8611234_SNP [dm6]	A	T	3.187e^-4	0.982	UTR_3_PRIME rgr DOWNSTREAM CG8642
3R	23252732	3R_23252732_SNP [dm3] 3R_27427010_SNP [dm6]	A	T	3.189e^-4	0.982	INTRON side
X	5057492	X_5057492_DEL [dm3] X_5163459_DEL [dm6]	TATTGC	T	3.207e^-4	0.982	INTRON rg & 1 other
3R	26141337	3R_26141337_DEL [dm3] 3R_30315615_DEL [dm6]	CC	C	3.209e^-4	0.982	INTRON hdc
X	6285047	X_6285047_SNP [dm3] X_6391014_SNP [dm6]	C	T	3.227e^-4	0.982	INTERGENIC
3L	10630590	3L_10630590_SNP [dm3] 3L_10637490_SNP [dm6]	A	G	3.228e^-4	0.982	SYNONYMOUS_CODING E_z_ UPSTREAM CG8009	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	11481324	3R_11481324_SNP [dm3] 3R_15655602_SNP [dm6]	C	A	3.229e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2614760	2L_2614760_DEL [dm3] 2L_2614760_DEL [dm6]	CT	C	3.236e^-4	0.982	INTERGENIC
2L	2684362	2L_2684362_SNP [dm3] 2L_2684362_SNP [dm6]	A	T	3.236e^-4	0.982	INTRON CG31690
2L	1367412	2L_1367412_SNP [dm3] 2L_1367412_SNP [dm6]	C	T	3.238e^-4	0.982	UPSTREAM CG14346 INTERGENIC
2R	18582166	2R_18582166_SNP [dm3] 2R_22694661_SNP [dm6]	A	G	3.243e^-4	0.982	SYNONYMOUS_CODING robo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9381655	2R_9381655_SNP [dm3] 2R_13494150_SNP [dm6]	G	A	3.244e^-4	0.982	INTRON bbc	TF binding site BDTNP1_TFBS_dl
3R	25611856	3R_25611856_SNP [dm3] 3R_29786134_SNP [dm6]	T	A	3.252e^-4	0.982	INTRON kay
2L	9574405	2L_9574405_SNP [dm3] 2L_9574405_SNP [dm6]	G	A	3.254e^-4	0.982	SPLICE_SITE_REGION Mtpalpha SYNONYMOUS_CODING Mtpalpha DOWNSTREAM CG3838
2R	11610863	2R_11610863_SNP [dm3] 2R_15723358_SNP [dm6]	A	G	3.262e^-4	0.982	INTERGENIC
3R	14203176	3R_14203176_SNP [dm3] 3R_18377454_SNP [dm6]	C	A	3.262e^-4	0.982	DOWNSTREAM CR44946 & 1 other INTERGENIC
3L	4487336	3L_4487336_SNP [dm3] 3L_4487336_SNP [dm6]	A	G	3.266e^-4	0.982	NON_SYNONYMOUS_CODING CG13722
3L	9204540	3L_9204540_SNP [dm3] 3L_9211440_SNP [dm6]	T	G	3.275e^-4	0.982	UPSTREAM CG4476 INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	3.277e^-4	0.982	INTRON CG42260
2R	11397361	2R_11397361_INS [dm3] 2R_15509856_INS [dm6]	G	GG	3.277e^-4	0.982	INTERGENIC
2R	6196416	2R_6196416_SNP [dm3] 2R_10308911_SNP [dm6]	G	T	3.279e^-4	0.982	SYNONYMOUS_CODING JhI-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2R	8942535	2R_8942535_SNP [dm3] 2R_13055030_SNP [dm6]	C	T	3.283e^-4	0.982	DOWNSTREAM Drl-2 INTERGENIC
2L	10385971	2L_10385971_INS [dm3] 2L_10385971_INS [dm6]	A	AAA	3.295e^-4	0.982	UPSTREAM mRpS7 INTRON cdc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	16615889	X_16615889_SNP [dm3] X_16721856_SNP [dm6]	T	A	3.296e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
2L	16005830	2L_16005830_SNP [dm3] 2L_16005830_SNP [dm6]	T	G	3.302e^-4	0.982	UTR_3_PRIME CG31820 UPSTREAM CR44844 DOWNSTREAM CG13245 & 1 other INTRON beat-Ic
2L	9773977	2L_9773977_SNP [dm3] 2L_9773977_SNP [dm6]	T	C	3.302e^-4	0.982	NON_SYNONYMOUS_CODING ppk11 UPSTREAM ppk16
2R	14471190	2R_14471190_SNP [dm3] 2R_18583685_SNP [dm6]	C	T	3.305e^-4	0.982	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20896991	X_20896991_DEL [dm3] X_21025964_DEL [dm6]	ATACTTAAGTA...	A	3.307e^-4	0.982	UPSTREAM r-cup DOWNSTREAM CG1532 INTERGENIC
3L	10481312	3L_10481312_SNP [dm3] 3L_10488212_SNP [dm6]	G	A	3.308e^-4	0.982	INTRON A2bp1
2L	18584717	2L_18584717_SNP [dm3] 2L_18584717_SNP [dm6]	G	T	3.310e^-4	0.982	INTRON Pde11
X	15083780	X_15083780_SNP [dm3] X_15189747_SNP [dm6]	G	A	3.314e^-4	0.982	UTR_3_PRIME CG43737
X	11558741	X_11558741_SNP [dm3] X_11664708_SNP [dm6]	G	C	3.315e^-4	0.982	INTRON Ptp10D
2L	6279786	2L_6279786_SNP [dm3] 2L_6279786_SNP [dm6]	A	T	3.336e^-4	0.982	INTRON Ddr
2L	13477176	2L_13477176_SNP [dm3] 2L_13477176_SNP [dm6]	T	C	3.339e^-4	0.982	INTRON CG42784
2R	14665505	2R_14665505_SNP [dm3] 2R_18778000_SNP [dm6]	G	A	3.342e^-4	0.982	DOWNSTREAM CR43964 INTERGENIC
3L	4002814	3L_4002814_SNP [dm3] 3L_4002814_SNP [dm6]	C	G	3.349e^-4	0.982	UPSTREAM CG14985 INTERGENIC
3L	6684203	3L_6684203_SNP [dm3] 3L_6691103_SNP [dm6]	G	A	3.361e^-4	0.982	SYNONYMOUS_CODING SP1173
3L	10615771	3L_10615771_SNP [dm3] 3L_10622671_SNP [dm6]	G	A	3.373e^-4	0.982	DOWNSTREAM CG42521 INTERGENIC
2R	6012424	2R_6012424_SNP [dm3] 2R_10124919_SNP [dm6]	G	A	3.376e^-4	0.982	UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3857674	X_3857674_SNP [dm3] X_3963641_SNP [dm6]	A	G	3.378e^-4	0.982	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8389054	2L_8389054_SNP [dm3] 2L_8389054_SNP [dm6]	A	G	3.386e^-4	0.982	SYNONYMOUS_CODING CG42819 UPSTREAM snRNA:U6atac:29B DOWNSTREAM CG13384 & 1 other
3R	27002621	3R_27002621_SNP [dm3] 3R_31176899_SNP [dm6]	A	G	3.392e^-4	0.982	INTRON Gycbeta100B
2R	15370810	2R_15370810_SNP [dm3] 2R_19483305_SNP [dm6]	A	C	3.393e^-4	0.982	DOWNSTREAM par-1 INTRON par-1	TF binding site BDTNP1_TFBS_da
3L	8618503	3L_8618503_SNP [dm3] 3L_8625403_SNP [dm6]	C	G	3.394e^-4	0.982	UPSTREAM Zasp66 INTRON Zasp66
2R	16917294	2R_16917294_SNP [dm3] 2R_21029789_SNP [dm6]	A	T	3.405e^-4	0.982	INTRON CR45148
2L	3865465	2L_3865465_SNP [dm3] 2L_3865465_SNP [dm6]	C	T	3.407e^-4	0.982	INTRON CG3964
3R	11547000	3R_11547000_SNP [dm3] 3R_15721278_SNP [dm6]	T	C	3.413e^-4	0.982	INTERGENIC
2R	11398692	2R_11398692_SNP [dm3] 2R_15511187_SNP [dm6]	A	T	3.415e^-4	0.982	UPSTREAM GalNAc-T1 INTERGENIC
2R	11398693	2R_11398693_SNP [dm3] 2R_15511188_SNP [dm6]	A	T	3.415e^-4	0.982	UPSTREAM GalNAc-T1 INTERGENIC
3R	15636997	3R_15636997_SNP [dm3] 3R_19811275_SNP [dm6]	T	C	3.416e^-4	0.982	INTRON bnl
2R	910429	2R_910429_SNP [dm3] 2R_5022924_SNP [dm6]	A	T	3.420e^-4	0.982	DOWNSTREAM Ir41a INTERGENIC	transposable element FlyBase
2L	20769946	2L_20769946_SNP [dm3] 2L_20769946_SNP [dm6]	T	C	3.422e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2004736	2L_2004736_SNP [dm3] 2L_2004736_SNP [dm6]	C	T	3.431e^-4	0.982	DOWNSTREAM CR43464 INTRON CG33543
X	21063327	X_21063327_INS [dm3] X_21192300_INS [dm6]	T	TT	3.435e^-4	0.982	UPSTREAM CG14579 INTERGENIC
3R	14959966	3R_14959966_SNP [dm3] 3R_19134244_SNP [dm6]	G	A	3.440e^-4	0.982	SYNONYMOUS_CODING Cyp12a5 UPSTREAM Cyp12a4
3L	13579097	3L_13579097_SNP [dm3] 3L_13585997_SNP [dm6]	C	G	3.454e^-4	0.982	INTRON bru-3
2R	14857618	2R_14857618_SNP [dm3] 2R_18970113_SNP [dm6]	A	C	3.466e^-4	0.982	INTRON prod	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13726506	2L_13726506_SNP [dm3] 2L_13726506_SNP [dm6]	G	T	3.471e^-4	0.982	INTERGENIC
2L	9018056	2L_9018056_SNP [dm3] 2L_9018056_SNP [dm6]	G	A	3.475e^-4	0.982	INTERGENIC
3L	13777370	3L_13777370_SNP [dm3] 3L_13784270_SNP [dm6]	A	G	3.479e^-4	0.982	INTRON bru-3
2R	16218284	2R_16218284_SNP [dm3] 2R_20330779_SNP [dm6]	C	T	3.485e^-4	0.982	DOWNSTREAM CG8929 INTERGENIC	TF binding site mE1_TFBS_cad
X	18982607	X_18982607_DEL [dm3] X_19088574_DEL [dm6]	TGGGGGGTA	G	3.498e^-4	0.982	INTERGENIC
2R	9702745	2R_9702745_SNP [dm3] 2R_13815240_SNP [dm6]	A	T	3.507e^-4	0.982	INTRON stj
2R	13639039	2R_13639039_SNP [dm3] 2R_17751534_SNP [dm6]	T	C	3.508e^-4	0.982	SYNONYMOUS_CODING CG5002	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5477303	X_5477303_SNP [dm3] X_5583270_SNP [dm6]	T	C	3.517e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	19303923	3R_19303923_SNP [dm3] 3R_23478201_SNP [dm6]	T	G	3.521e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10628125	3L_10628125_SNP [dm3] 3L_10635025_SNP [dm6]	C	G	3.522e^-4	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17816742	2R_17816742_SNP [dm3] 2R_21929237_SNP [dm6]	C	A	3.525e^-4	0.982	INTRON Fili
3R	18973529	3R_18973529_SNP [dm3] 3R_23147807_SNP [dm6]	G	A	3.528e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs
2R	3583382	2R_3583382_SNP [dm3] 2R_7695877_SNP [dm6]	G	A	3.532e^-4	0.982	UPSTREAM CG1399 INTRON CG1399
2R	17964922	2R_17964922_SNP [dm3] 2R_22077417_SNP [dm6]	C	T	3.535e^-4	0.982	SYNONYMOUS_CODING GlcT-1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9901609	3L_9901609_SNP [dm3] 3L_9908509_SNP [dm6]	C	T	3.536e^-4	0.982	INTRON CG34356
3R	4965150	3R_4965150_SNP [dm3] 3R_9139428_SNP [dm6]	A	G	3.548e^-4	0.982	INTRON pum
3L	6304710	3L_6304710_SNP [dm3] 3L_6311610_SNP [dm6]	C	A	3.550e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
2L	20769855	2L_20769855_SNP [dm3] 2L_20769855_SNP [dm6]	G	T	3.553e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8742230	2L_8742230_SNP [dm3] 2L_8742230_SNP [dm6]	C	T	3.558e^-4	0.982	INTERGENIC
2L	20769991	2L_20769991_SNP [dm3] 2L_20769991_SNP [dm6]	C	G	3.563e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	20459052	X_20459052_SNP [dm3] X_20588025_SNP [dm6]	G	A	3.564e^-4	0.982	INTERGENIC
2L	2675205	2L_2675205_SNP [dm3] 2L_2675205_SNP [dm6]	G	C	3.578e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
3L	6684711	3L_6684711_SNP [dm3] 3L_6691611_SNP [dm6]	C	T	3.581e^-4	0.982	NON_SYNONYMOUS_CODING SP1173	TF binding site mE1_TFBS_cad
2L	6107755	2L_6107755_SNP [dm3] 2L_6107755_SNP [dm6]	A	T	3.581e^-4	0.982	INTRON stai
2R	19897084	2R_19897084_SNP [dm3] 2R_24009561_SNP [dm6]	A	G	3.583e^-4	0.982	NON_SYNONYMOUS_CODING Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
X	16101917	X_16101917_SNP [dm3] X_16207884_SNP [dm6]	C	A	3.590e^-4	0.982	INTERGENIC
X	5968772	X_5968772_SNP [dm3] X_6074739_SNP [dm6]	G	A	3.593e^-4	0.982	UTR_5_PRIME Tsp5D
2L	11687656	2L_11687656_SNP [dm3] 2L_11687656_SNP [dm6]	G	T	3.594e^-4	0.982	INTERGENIC
2L	1644329	2L_1644329_SNP [dm3] 2L_1644329_SNP [dm6]	A	T	3.600e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2R	2535724	2R_2535724_SNP [dm3] 2R_6648219_SNP [dm6]	T	A	3.602e^-4	0.982	UPSTREAM debcl INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23432105	3R_23432105_SNP [dm3] 3R_27606383_SNP [dm6]	A	C	3.603e^-4	0.982	INTRON dsd
2L	16809925	2L_16809925_SNP [dm3] 2L_16809925_SNP [dm6]	A	G	3.629e^-4	0.982	INTRON CG13280 & 1 other
3R	18128446	3R_18128446_SNP [dm3] 3R_22302724_SNP [dm6]	T	G	3.631e^-4	0.982	INTRON CG7084	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14617380	3L_14617380_SNP [dm3] 3L_14624280_SNP [dm6]	T	C	3.632e^-4	0.982	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	13580902	2L_13580902_SNP [dm3] 2L_13580902_SNP [dm6]	G	T	3.640e^-4	0.982	INTRON kuz
2R	9759654	2R_9759654_SNP [dm3] 2R_13872149_SNP [dm6]	C	T	3.643e^-4	0.982	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
3L	16446107	3L_16446107_SNP [dm3] 3L_16453007_SNP [dm6]	A	G	3.648e^-4	0.982	INTRON CG33158
2R	7566266	2R_7566266_SNP [dm3] 2R_11678761_SNP [dm6]	T	A	3.648e^-4	0.982	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	5507291	2L_5507291_SNP [dm3] 2L_5507291_SNP [dm6]	A	C	3.652e^-4	0.982	INTERGENIC
3R	11338567	3R_11338567_SNP [dm3] 3R_15512845_SNP [dm6]	C	T	3.666e^-4	0.982	INTERGENIC
2L	2419441	2L_2419441_SNP [dm3] 2L_2419441_SNP [dm6]	G	A	3.670e^-4	0.982	SYNONYMOUS_CODING CG34447	TF binding site mE1_TFBS_HSA
2R	16948450	2R_16948450_SNP [dm3] 2R_21060945_SNP [dm6]	G	A	3.676e^-4	0.982	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	19434520	3L_19434520_SNP [dm3] 3L_19441420_SNP [dm6]	A	C	3.678e^-4	0.982	UPSTREAM CR45732 DOWNSTREAM CG33062 INTERGENIC
3L	15840003	3L_15840003_SNP [dm3] 3L_15846903_SNP [dm6]	C	T	3.691e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12270239	2R_12270239_DEL [dm3] 2R_16382734_DEL [dm6]	AAG	A	3.702e^-4	0.982	UTR_3_PRIME CG43187 DOWNSTREAM CG43187
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	3.710e^-4	0.982	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9546639	3L_9546639_SNP [dm3] 3L_9553539_SNP [dm6]	G	A	3.717e^-4	0.982	SPLICE_SITE_REGION CG42673 INTRON CG42673
X	15174089	X_15174089_SNP [dm3] X_15280056_SNP [dm6]	G	A	3.718e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12811717	2L_12811717_SNP [dm3] 2L_12811717_SNP [dm6]	C	G	3.725e^-4	0.982	INTERGENIC
2L	19900928	2L_19900928_SNP [dm3] 2L_19900928_SNP [dm6]	G	A	3.728e^-4	0.982	INTRON sick
2R	13774675	2R_13774675_SNP [dm3] 2R_17887170_SNP [dm6]	T	C	3.732e^-4	0.982	DOWNSTREAM PPO1 INTRON Elk
2R	11436804	2R_11436804_SNP [dm3] 2R_15549299_SNP [dm6]	G	T	3.733e^-4	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z
X	17898446	X_17898446_SNP [dm3] X_18004413_SNP [dm6]	A	C	3.735e^-4	0.982	INTRON Sh
2L	11686976	2L_11686976_SNP [dm3] 2L_11686976_SNP [dm6]	G	A	3.735e^-4	0.982	INTERGENIC
2L	20376863	2L_20376863_SNP [dm3] 2L_20376863_SNP [dm6]	G	A	3.754e^-4	0.982	DOWNSTREAM CG16798 INTERGENIC
3R	9867046	3R_9867046_DEL [dm3] 3R_14041324_DEL [dm6]	TT	T	3.765e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10840187	3L_10840187_SNP [dm3] 3L_10847087_SNP [dm6]	C	T	3.770e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	6012441	2R_6012441_SNP [dm3] 2R_10124936_SNP [dm6]	A	G	3.780e^-4	0.982	START_GAINED gem UTR_5_PRIME gem UPSTREAM gem	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14203266	3R_14203266_SNP [dm3] 3R_18377544_SNP [dm6]	A	C	3.780e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC
2L	15002658	2L_15002658_SNP [dm3] 2L_15002658_SNP [dm6]	C	G	3.788e^-4	0.982	INTERGENIC
3R	15059214	3R_15059214_SNP [dm3] 3R_19233492_SNP [dm6]	A	T	3.789e^-4	0.982	SYNONYMOUS_CODING unc79
3R	14203040	3R_14203040_SNP [dm3] 3R_18377318_SNP [dm6]	G	T	3.792e^-4	0.982	DOWNSTREAM CR44946 & 1 other INTERGENIC
3L	16445447	3L_16445447_SNP [dm3] 3L_16452347_SNP [dm6]	C	T	3.806e^-4	0.982	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	11645172	2R_11645172_SNP [dm3] 2R_15757667_SNP [dm6]	C	A	3.811e^-4	0.982	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9759667	2R_9759667_SNP [dm3] 2R_13872162_SNP [dm6]	A	G	3.812e^-4	0.982	INTRON shot	TF binding site mE1_TFBS_cad
3R	23230851	3R_23230851_SNP [dm3] 3R_27405129_SNP [dm6]	C	T	3.819e^-4	0.982	INTRON side
3R	16782164	3R_16782164_SNP [dm3] 3R_20956442_SNP [dm6]	T	G	3.834e^-4	0.982	INTRON Atpalpha
X	19721088	X_19721088_SNP [dm3] X_19827055_SNP [dm6]	C	G	3.836e^-4	0.982	INTERGENIC
2L	11871930	2L_11871930_SNP [dm3] 2L_11871930_SNP [dm6]	C	T	3.847e^-4	0.982	INTRON Pde1c
X	21037215	X_21037215_DEL [dm3] X_21166188_DEL [dm6]	ATTATATTT	G	3.849e^-4	0.982	INTERGENIC
3R	19303907	3R_19303907_SNP [dm3] 3R_23478185_SNP [dm6]	G	T	3.861e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4674829	2L_4674829_SNP [dm3] 2L_4674829_SNP [dm6]	G	C	3.864e^-4	0.982	INTERGENIC
2R	20572398	2R_20572398_SNP [dm3] 2R_24684875_SNP [dm6]	G	T	3.869e^-4	0.982	UTR_5_PRIME Mmp1 INTRON Mmp1
2L	20245125	2L_20245125_SNP [dm3] 2L_20245125_SNP [dm6]	A	C	3.890e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9046523	X_9046523_SNP [dm3] X_9152490_SNP [dm6]	C	T	3.894e^-4	0.982	DOWNSTREAM His3.3B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16809928	2L_16809928_SNP [dm3] 2L_16809928_SNP [dm6]	T	A	3.895e^-4	0.982	INTRON CG13280 & 1 other
3L	17610088	3L_17610088_SNP [dm3] 3L_17616988_SNP [dm6]	T	C	3.896e^-4	0.982	INTRON Eip74EF
3L	6760777	3L_6760777_SNP [dm3] 3L_6767677_SNP [dm6]	T	C	3.896e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3L	2765403	3L_2765403_SNP [dm3] 3L_2765403_SNP [dm6]	T	A	3.897e^-4	0.982	INTRON Mrtf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	6341972	3L_6341972_SNP [dm3] 3L_6348872_SNP [dm6]	T	A	3.898e^-4	0.982	INTRON CG13300
2R	9953375	2R_9953375_SNP [dm3] 2R_14065870_SNP [dm6]	A	G	3.905e^-4	0.982	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10826656	3L_10826656_SNP [dm3] 3L_10833556_SNP [dm6]	T	G	3.927e^-4	0.982	INTERGENIC
3L	6498261	3L_6498261_SNP [dm3] 3L_6505161_SNP [dm6]	G	A	3.935e^-4	0.982	INTRON sfl
3R	23233718	3R_23233718_SNP [dm3] 3R_27407996_SNP [dm6]	T	C	3.940e^-4	0.982	INTRON side
X	16615948	X_16615948_SNP [dm3] X_16721915_SNP [dm6]	T	A	3.956e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
2L	16213071	2L_16213071_SNP [dm3] 2L_16213071_SNP [dm6]	A	G	3.960e^-4	0.982	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
3L	12153142	3L_12153142_SNP [dm3] 3L_12160042_SNP [dm6]	C	T	3.962e^-4	0.982	INTRON CG9760
2R	10810220	2R_10810220_SNP [dm3] 2R_14922715_SNP [dm6]	C	T	3.975e^-4	0.982	INTRON CG10249
X	15209907	X_15209907_SNP [dm3] X_15315874_SNP [dm6]	A	G	3.992e^-4	0.982	SYNONYMOUS_CODING gce EXON CR44961	TF binding site mE1_TFBS_cad
3R	26459272	3R_26459272_SNP [dm3] 3R_30633550_SNP [dm6]	T	A	3.995e^-4	0.982	INTERGENIC
3R	20914260	3R_20914260_SNP [dm3] 3R_25088538_SNP [dm6]	C	G	3.998e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5264323	3L_5264323_DEL [dm3] 3L_5271223_DEL [dm6]	TCCATCAAGAGGTATATTCC...	T	4.000e^-4	0.982	INTRON shep
2L	5686094	2L_5686094_SNP [dm3] 2L_5686094_SNP [dm6]	A	C	4.001e^-4	0.982	INTERGENIC
2L	8301927	2L_8301927_SNP [dm3] 2L_8301927_SNP [dm6]	T	C	4.013e^-4	0.982	UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	8301928	2L_8301928_SNP [dm3] 2L_8301928_SNP [dm6]	T	C	4.013e^-4	0.982	SPLICE_SITE_REGION wol UPSTREAM Btk29A INTRON wol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	18849413	3L_18849413_SNP [dm3] 3L_18856313_SNP [dm6]	A	G	4.020e^-4	0.982	UPSTREAM CR45388 INTERGENIC
2R	16131320	2R_16131320_SNP [dm3] 2R_20243815_SNP [dm6]	G	A	4.024e^-4	0.982	NON_SYNONYMOUS_CODING CG11208 DOWNSTREAM Efhc1.2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	11797455	2R_11797455_SNP [dm3] 2R_15909950_SNP [dm6]	G	T	4.025e^-4	0.982	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10385987	2L_10385987_SNP [dm3] 2L_10385987_SNP [dm6]	G	A	4.030e^-4	0.982	UPSTREAM mRpS7 INTRON cdc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12780177	3L_12780177_SNP [dm3] 3L_12787077_SNP [dm6]	C	A	4.032e^-4	0.982	INTRON Atg1	TF binding site mE1_TFBS_cad
X	18983964	X_18983964_SNP [dm3] X_19089931_SNP [dm6]	G	A	4.043e^-4	0.982	INTERGENIC
3R	14203556	3R_14203556_SNP [dm3] 3R_18377834_SNP [dm6]	T	C	4.045e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3L	3594104	3L_3594104_SNP [dm3] 3L_3594104_SNP [dm6]	T	C	4.047e^-4	0.982	DOWNSTREAM snRNA:U7 INTRON Eip63E	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26635049	3R_26635049_SNP [dm3] 3R_30809327_SNP [dm6]	C	T	4.051e^-4	0.982	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	11687655	2L_11687655_SNP [dm3] 2L_11687655_SNP [dm6]	T	G	4.070e^-4	0.982	INTERGENIC
3L	13492097	3L_13492097_SNP [dm3] 3L_13498997_SNP [dm6]	C	T	4.070e^-4	0.982	INTRON Tgi
3R	12109137	3R_12109137_SNP [dm3] 3R_16283415_SNP [dm6]	A	C	4.071e^-4	0.982	INTRON gish	TF binding site BDTNP1_TFBS_dl
2R	10011859	2R_10011859_SNP [dm3] 2R_14124354_SNP [dm6]	C	G	4.076e^-4	0.982	INTRON Prosap
3R	16782183	3R_16782183_SNP [dm3] 3R_20956461_SNP [dm6]	T	C	4.079e^-4	0.982	INTRON Atpalpha
2L	5613311	2L_5613311_SNP [dm3] 2L_5613311_SNP [dm6]	T	C	4.082e^-4	0.982	INTRON CG14010
3R	4965152	3R_4965152_SNP [dm3] 3R_9139430_SNP [dm6]	T	A	4.090e^-4	0.982	INTRON pum
X	19143930	X_19143930_SNP [dm3] X_19249897_SNP [dm6]	G	A	4.095e^-4	0.982	SYNONYMOUS_CODING Hs3st-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	8715417	2R_8715417_SNP [dm3] 2R_12827912_SNP [dm6]	A	G	4.095e^-4	0.982	INTERGENIC
X	4836700	X_4836700_SNP [dm3] X_4942667_SNP [dm6]	A	G	4.097e^-4	0.982	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
2R	9759704	2R_9759704_SNP [dm3] 2R_13872199_SNP [dm6]	C	T	4.100e^-4	0.982	INTRON shot	TF binding site mE1_TFBS_cad
3L	4505995	3L_4505995_INS [dm3] 3L_4505995_INS [dm6]	A	AACAA	4.101e^-4	0.982	INTRON NT1
X	16615912	X_16615912_SNP [dm3] X_16721879_SNP [dm6]	A	T	4.101e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
X	11558730	X_11558730_SNP [dm3] X_11664697_SNP [dm6]	T	C	4.101e^-4	0.982	INTRON Ptp10D
3L	14081257	3L_14081257_SNP [dm3] 3L_14088157_SNP [dm6]	C	T	4.117e^-4	0.982	INTERGENIC
2L	18654240	2L_18654240_SNP [dm3] 2L_18654240_SNP [dm6]	C	A	4.120e^-4	0.982	INTRON MESR3	TF binding site mE1_TFBS_cnc
2L	3963467	2L_3963467_SNP [dm3] 2L_3963467_SNP [dm6]	T	C	4.132e^-4	0.982	INTRON fred	TF binding site mE1_TFBS_bab1
3L	3387616	3L_3387616_SNP [dm3] 3L_3387616_SNP [dm6]	A	T	4.137e^-4	0.982	INTERGENIC
2R	6130784	2R_6130784_SNP [dm3] 2R_10243279_SNP [dm6]	C	T	4.140e^-4	0.982	SYNONYMOUS_CODING Hdc	TF binding site mE1_TFBS_cad
3L	4506027	3L_4506027_SNP [dm3] 3L_4506027_SNP [dm6]	T	G	4.148e^-4	0.982	INTRON NT1
2L	1644334	2L_1644334_SNP [dm3] 2L_1644334_SNP [dm6]	T	A	4.165e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ftz_f1 mE1_TFBS_HSA
3R	9626312	3R_9626312_SNP [dm3] 3R_13800590_SNP [dm6]	A	G	4.166e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
2L	16213064	2L_16213064_SNP [dm3] 2L_16213064_SNP [dm6]	C	T	4.167e^-4	0.982	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
3L	8126420	3L_8126420_SNP [dm3] 3L_8133320_SNP [dm6]	G	A	4.167e^-4	0.982	SYNONYMOUS_CODING CG7504
X	8560804	X_8560804_SNP [dm3] X_8666771_SNP [dm6]	A	T	4.173e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18824653	3R_18824653_DEL [dm3] 3R_22998931_DEL [dm6]	GG	G	4.178e^-4	0.982	UPSTREAM Nha2 INTERGENIC
X	18881757	X_18881757_SNP [dm3] X_18987724_SNP [dm6]	G	A	4.185e^-4	0.982	INTRON CG43759
3L	10836598	3L_10836598_SNP [dm3] 3L_10843498_SNP [dm6]	T	G	4.194e^-4	0.982	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17693896	2R_17693896_SNP [dm3] 2R_21806391_SNP [dm6]	C	A	4.196e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8672010	2R_8672010_SNP [dm3] 2R_12784505_SNP [dm6]	C	G	4.208e^-4	0.982	SYNONYMOUS_CODING sca EXON CR45137
3L	11117475	3L_11117475_SNP [dm3] 3L_11124375_SNP [dm6]	T	A	4.212e^-4	0.982	INTRON CG42575	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	15235657	2R_15235657_SNP [dm3] 2R_19348152_SNP [dm6]	A	T	4.215e^-4	0.982	INTRON Rgk1
X	4478059	X_4478059_SNP [dm3] X_4584026_SNP [dm6]	G	T	4.215e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14497037	2R_14497037_SNP [dm3] 2R_18609532_SNP [dm6]	T	A	4.217e^-4	0.982	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16304941	2L_16304941_SNP [dm3] 2L_16304941_SNP [dm6]	G	T	4.218e^-4	0.982	SYNONYMOUS_CODING c_2_M DOWNSTREAM CG5861	TF binding site mE1_TFBS_HSA
3R	14444109	3R_14444109_SNP [dm3] 3R_18618387_SNP [dm6]	C	T	4.228e^-4	0.982	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5374403	2L_5374403_SNP [dm3] 2L_5374403_SNP [dm6]	C	T	4.229e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12187688	3L_12187688_SNP [dm3] 3L_12194588_SNP [dm6]	T	C	4.236e^-4	0.982	UPSTREAM thoc6 INTERGENIC	TF binding site mE1_TFBS_zfh1
2R	6200475	2R_6200475_SNP [dm3] 2R_10312970_SNP [dm6]	G	C	4.248e^-4	0.982	UPSTREAM Obp46a & 1 other INTERGENIC
3R	11469621	3R_11469621_SNP [dm3] 3R_15643899_SNP [dm6]	T	A	4.252e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	4691812	3R_4691812_SNP [dm3] 3R_8866090_SNP [dm6]	C	T	4.260e^-4	0.982	INTRON pyd
X	15083785	X_15083785_INS [dm3] X_15189752_INS [dm6]	T	TT	4.264e^-4	0.982	UTR_3_PRIME CG43737
3L	18099420	3L_18099420_SNP [dm3] 3L_18106320_SNP [dm6]	C	A	4.265e^-4	0.982	UPSTREAM mRpS26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	16117841	2R_16117841_SNP [dm3] 2R_20230336_SNP [dm6]	C	A	4.266e^-4	0.982	DOWNSTREAM tRNA:G3:56EFa INTERGENIC
2L	9444754	2L_9444754_SNP [dm3] 2L_9444754_SNP [dm6]	G	C	4.268e^-4	0.982	INTRON numb
3R	18825311	3R_18825311_SNP [dm3] 3R_22999589_SNP [dm6]	T	G	4.295e^-4	0.982	DOWNSTREAM CG34375 INTERGENIC
X	17901079	X_17901079_SNP [dm3] X_18007046_SNP [dm6]	T	C	4.310e^-4	0.982	SYNONYMOUS_CODING CG12672 INTRON Sh
2R	18941198	2R_18941198_SNP [dm3] 2R_23053675_SNP [dm6]	G	A	4.312e^-4	0.982	INTERGENIC
X	16615910	X_16615910_SNP [dm3] X_16721877_SNP [dm6]	A	C	4.312e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3R	10330305	3R_10330305_SNP [dm3] 3R_14504583_SNP [dm6]	C	A	4.312e^-4	0.982	INTRON CR44177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8736908	2L_8736908_SNP [dm3] 2L_8736908_SNP [dm6]	A	G	4.313e^-4	0.982	INTRON raw
2R	5986958	2R_5986958_SNP [dm3] 2R_10099453_SNP [dm6]	T	G	4.328e^-4	0.982	UPSTREAM 14-3-3zeta DOWNSTREAM Jra INTRON RpLP0-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	10979978	2R_10979978_SNP [dm3] 2R_15092473_SNP [dm6]	G	A	4.331e^-4	0.982	DOWNSTREAM CR44457 INTERGENIC
2L	2746110	2L_2746110_SNP [dm3] 2L_2746110_SNP [dm6]	C	T	4.334e^-4	0.982	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	15889036	2L_15889036_SNP [dm3] 2L_15889036_SNP [dm6]	G	T	4.340e^-4	0.982	NON_SYNONYMOUS_CODING Tep1 DOWNSTREAM CR31824
2R	1813542	2R_1813542_SNP [dm3] 2R_5926037_SNP [dm6]	A	C	4.343e^-4	0.982	NON_SYNONYMOUS_CODING CG43366	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11507825	3R_11507825_SNP [dm3] 3R_15682103_SNP [dm6]	C	T	4.348e^-4	0.982	INTRON pxb
2L	9774657	2L_9774657_SNP [dm3] 2L_9774657_SNP [dm6]	T	C	4.356e^-4	0.982	NON_SYNONYMOUS_CODING ppk11	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5264396	3L_5264396_SNP [dm3] 3L_5271296_SNP [dm6]	G	A	4.362e^-4	0.982	INTRON shep
3L	13267396	3L_13267396_SNP [dm3] 3L_13274296_SNP [dm6]	T	C	4.362e^-4	0.982	INTRON caps
2L	15871496	2L_15871496_SNP [dm3] 2L_15871496_SNP [dm6]	G	A	4.369e^-4	0.982	INTERGENIC
3L	10628607	3L_10628607_SNP [dm3] 3L_10635507_SNP [dm6]	G	A	4.370e^-4	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
2R	11436685	2R_11436685_SNP [dm3] 2R_15549180_SNP [dm6]	C	A	4.377e^-4	0.982	INTRON CG8192	TF binding site BDTNP1_TFBS_z
2R	8897324	2R_8897324_SNP [dm3] 2R_13009819_SNP [dm6]	C	T	4.378e^-4	0.982	INTERGENIC
3R	22806754	3R_22806754_SNP [dm3] 3R_26981032_SNP [dm6]	C	T	4.382e^-4	0.982	UTR_5_PRIME CG14253 INTRON CG14253	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16213713	2L_16213713_SNP [dm3] 2L_16213713_SNP [dm6]	G	A	4.382e^-4	0.982	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4912088	3R_4912088_SNP [dm3] 3R_9086366_SNP [dm6]	A	C	4.388e^-4	0.982	INTRON pum
3L	17573235	3L_17573235_SNP [dm3] 3L_17580135_SNP [dm6]	A	T	4.390e^-4	0.982	INTRON Eip74EF
X	16615961	X_16615961_SNP [dm3] X_16721928_SNP [dm6]	A	G	4.392e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
2L	3262851	2L_3262851_SNP [dm3] 2L_3262851_SNP [dm6]	G	A	4.400e^-4	0.982	UPSTREAM CR45338 INTERGENIC
3R	23882219	3R_23882219_SNP [dm3] 3R_28056497_SNP [dm6]	A	C	4.412e^-4	0.982	INTRON CG34362
X	22231645	X_22231645_SNP [dm3] X_22829809_SNP [dm6]	C	T	4.420e^-4	0.982	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	16727293	X_16727293_DEL [dm3] X_16833260_DEL [dm6]	AACCTAAGACTCAGCTATAC...	A	4.422e^-4	0.982	INTRON CG13004
3R	16956139	3R_16956139_SNP [dm3] 3R_21130417_SNP [dm6]	A	T	4.427e^-4	0.982	UTR_5_PRIME Ice2 UPSTREAM Obp93a DOWNSTREAM CG5793 INTRON Ice2	TF binding site mE1_TFBS_cad
3L	1472153	3L_1472153_SNP [dm3] 3L_1472153_SNP [dm6]	G	T	4.428e^-4	0.982	UPSTREAM CG32319 INTRON Ptp61F
3R	11416144	3R_11416144_SNP [dm3] 3R_15590422_SNP [dm6]	A	G	4.435e^-4	0.982	INTERGENIC
2R	1617228	2R_1617228_SNP [dm3] 2R_5729723_SNP [dm6]	T	C	4.442e^-4	0.982	INTERGENIC
3L	10628634	3L_10628634_SNP [dm3] 3L_10635534_SNP [dm6]	G	T	4.450e^-4	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	6500516	3L_6500516_SNP [dm3] 3L_6507416_SNP [dm6]	G	A	4.454e^-4	0.982	INTRON sfl
X	7682591	X_7682591_SNP [dm3] X_7788558_SNP [dm6]	T	A	4.454e^-4	0.982	INTERGENIC
2R	15926650	2R_15926650_SNP [dm3] 2R_20039145_SNP [dm6]	G	T	4.459e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19890880	2L_19890880_SNP [dm3] 2L_19890880_SNP [dm6]	G	A	4.470e^-4	0.982	SYNONYMOUS_CODING CG10481 INTRON sick
2R	18937361	2R_18937361_SNP [dm3] 2R_23049838_SNP [dm6]	G	A	4.477e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18874759	3L_18874759_SNP [dm3] 3L_18881659_SNP [dm6]	G	A	4.478e^-4	0.982	INTRON CG3961
3R	23162209	3R_23162209_SNP [dm3] 3R_27336487_SNP [dm6]	A	G	4.481e^-4	0.982	INTERGENIC
2R	12382239	2R_12382239_SNP [dm3] 2R_16494734_SNP [dm6]	G	C	4.484e^-4	0.982	INTERGENIC
3L	12201318	3L_12201318_SNP [dm3] 3L_12208218_SNP [dm6]	T	A	4.488e^-4	0.982	DOWNSTREAM app INTRON app
2R	17542759	2R_17542759_SNP [dm3] 2R_21655254_SNP [dm6]	C	T	4.491e^-4	0.982	SYNONYMOUS_CODING CG10082	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18984266	X_18984266_SNP [dm3] X_19090233_SNP [dm6]	C	T	4.500e^-4	0.982	INTERGENIC
2R	6007934	2R_6007934_SNP [dm3] 2R_10120429_SNP [dm6]	A	G	4.500e^-4	0.982	SYNONYMOUS_CODING dmpd	TF binding site BDTNP1_TFBS_twi
3R	13724743	3R_13724743_SNP [dm3] 3R_17899021_SNP [dm6]	A	C	4.504e^-4	0.982	INTRON Rim
3R	24996433	3R_24996433_SNP [dm3] 3R_29170711_SNP [dm6]	A	T	4.504e^-4	0.982	DOWNSTREAM CG14509 INTRON CG11898
2L	9460394	2L_9460394_SNP [dm3] 2L_9460394_SNP [dm6]	T	A	4.504e^-4	0.982	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	15229439	2L_15229439_SNP [dm3] 2L_15229439_SNP [dm6]	T	A	4.504e^-4	0.982	INTRON ZnT35C
3L	7248662	3L_7248662_SNP [dm3] 3L_7255562_SNP [dm6]	A	G	4.511e^-4	0.982	INTRON CG14830
2L	9460806	2L_9460806_DEL [dm3] 2L_9460806_DEL [dm6]	AGAA	A	4.513e^-4	0.982	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14538689	3L_14538689_INS [dm3] 3L_14545589_INS [dm6]	G	GTCTACATG	4.518e^-4	0.982	INTRON CG9238	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9801564	2R_9801564_SNP [dm3] 2R_13914059_SNP [dm6]	G	C	4.518e^-4	0.982	INTRON shot	TF binding site mE1_TFBS_inv
3R	27049922	3R_27049922_SNP [dm3] 3R_31224200_SNP [dm6]	C	T	4.526e^-4	0.982	UPSTREAM CG12054 INTRON CG12054	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10982687	X_10982687_SNP [dm3] X_11088654_SNP [dm6]	T	A	4.527e^-4	0.982	UPSTREAM Vago DOWNSTREAM CR45604 INTERGENIC
2R	11399011	2R_11399011_SNP [dm3] 2R_15511506_SNP [dm6]	G	C	4.531e^-4	0.982	UPSTREAM GalNAc-T1 INTERGENIC
3L	6326115	3L_6326115_SNP [dm3] 3L_6333015_SNP [dm6]	C	T	4.537e^-4	0.982	UTR_5_PRIME CG13300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12690797	3L_12690797_SNP [dm3] 3L_12697697_SNP [dm6]	G	A	4.537e^-4	0.982	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	3601181	X_3601181_SNP [dm3] X_3707148_SNP [dm6]	C	T	4.550e^-4	0.982	INTRON Rala
3L	15399141	3L_15399141_INS [dm3] 3L_15406041_INS [dm6]	T	TC	4.558e^-4	0.982	INTERGENIC
X	9002284	X_9002284_SNP [dm3] X_9108251_SNP [dm6]	C	T	4.561e^-4	0.982	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
2L	6038014	2L_6038014_SNP [dm3] 2L_6038014_SNP [dm6]	A	C	4.563e^-4	0.982	UPSTREAM mtm & 2 others INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	20959498	3L_20959498_SNP [dm3] 3L_20966398_SNP [dm6]	T	A	4.563e^-4	0.982	NON_SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287
3L	10708333	3L_10708333_SNP [dm3] 3L_10715233_SNP [dm6]	G	T	4.563e^-4	0.982	INTERGENIC
X	3458592	X_3458592_SNP [dm3] X_3564559_SNP [dm6]	A	G	4.567e^-4	0.982	INTRON CG32791 & 1 other
2L	15193784	2L_15193784_SNP [dm3] 2L_15193784_SNP [dm6]	T	C	4.570e^-4	0.982	INTRON CG4168
X	6451850	X_6451850_SNP [dm3] X_6557817_SNP [dm6]	C	T	4.584e^-4	0.982	SYNONYMOUS_CODING CG34417 INTRON CG34417
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	4.588e^-4	0.982	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10337283	X_10337283_SNP [dm3] X_10443250_SNP [dm6]	T	C	4.594e^-4	0.982	DOWNSTREAM snoRNA:Me28S-A1705 INTRON CG32683
2L	8873532	2L_8873532_SNP [dm3] 2L_8873532_SNP [dm6]	A	C	4.597e^-4	0.982	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6987088	3R_6987088_SNP [dm3] 3R_11161366_SNP [dm6]	C	T	4.597e^-4	0.982	SYNONYMOUS_CODING CG4757
3L	10836575	3L_10836575_SNP [dm3] 3L_10843475_SNP [dm6]	T	A	4.597e^-4	0.982	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16782159	3R_16782159_SNP [dm3] 3R_20956437_SNP [dm6]	G	T	4.598e^-4	0.982	INTRON Atpalpha
2L	10905150	2L_10905150_SNP [dm3] 2L_10905150_SNP [dm6]	T	C	4.602e^-4	0.982	INTERGENIC
2R	5984018	2R_5984018_SNP [dm3] 2R_10096513_SNP [dm6]	G	A	4.604e^-4	0.982	UTR_5_PRIME Jra UPSTREAM Jra DOWNSTREAM CG2269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	10938918	3R_10938918_SNP [dm3] 3R_15113196_SNP [dm6]	G	C	4.606e^-4	0.982	INTRON CG42788
X	16846275	X_16846275_SNP [dm3] X_16952242_SNP [dm6]	G	A	4.620e^-4	0.982	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18995459	2R_18995459_DEL [dm3] 2R_23107936_DEL [dm6]	GACACGGAGTTGG...	G	4.625e^-4	0.982	INTERGENIC
3L	4558882	3L_4558882_SNP [dm3] 3L_4558882_SNP [dm6]	G	A	4.625e^-4	0.982	INTRON CG42540
3L	14965808	3L_14965808_SNP [dm3] 3L_14972708_SNP [dm6]	G	T	4.634e^-4	0.982	UTR_5_PRIME Brd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4503344	3L_4503344_SNP [dm3] 3L_4503344_SNP [dm6]	A	G	4.641e^-4	0.982	SYNONYMOUS_CODING NT1 DOWNSTREAM NT1
3L	18269224	3L_18269224_SNP [dm3] 3L_18276124_SNP [dm6]	A	T	4.642e^-4	0.982	INTERGENIC
2R	10863968	2R_10863968_SNP [dm3] 2R_14976463_SNP [dm6]	A	G	4.645e^-4	0.982	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10628637	3L_10628637_SNP [dm3] 3L_10635537_SNP [dm6]	A	G	4.651e^-4	0.982	SYNONYMOUS_CODING E_z_ DOWNSTREAM CG34001
3L	6307217	3L_6307217_INS [dm3] 3L_6314117_INS [dm6]	T	TGTT	4.660e^-4	0.982	INTERGENIC
2L	5263709	2L_5263709_SNP [dm3] 2L_5263709_SNP [dm6]	A	T	4.669e^-4	0.982	UPSTREAM Cyp4ac1 INTRON tkv
3R	14203555	3R_14203555_SNP [dm3] 3R_18377833_SNP [dm6]	G	A	4.672e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC	transposable element FlyBase
3R	11461321	3R_11461321_SNP [dm3] 3R_15635599_SNP [dm6]	C	T	4.688e^-4	0.982	SYNONYMOUS_CODING CG43335
2L	16470931	2L_16470931_SNP [dm3] 2L_16470931_SNP [dm6]	T	C	4.688e^-4	0.982	INTRON dac	regulatory region REDfly_CRMs
3L	1268203	3L_1268203_SNP [dm3] 3L_1268203_SNP [dm6]	A	G	4.706e^-4	0.982	INTRON CG9134
3L	19947312	3L_19947312_SNP [dm3] 3L_19954212_SNP [dm6]	C	T	4.713e^-4	0.982	SYNONYMOUS_CODING CG42654 UPSTREAM CG42655 DOWNSTREAM CG42263 INTRON Ac76E	TF binding site mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	16731942	2R_16731942_SNP [dm3] 2R_20844437_SNP [dm6]	C	A	4.720e^-4	0.982	INTERGENIC
3L	10071805	3L_10071805_SNP [dm3] 3L_10078705_SNP [dm6]	T	G	4.735e^-4	0.982	INTRON dpr6	TF binding site mE1_TFBS_cad
2L	10152591	2L_10152591_SNP [dm3] 2L_10152591_SNP [dm6]	A	G	4.742e^-4	0.982	INTRON CG44153 & 1 other
2R	7566276	2R_7566276_SNP [dm3] 2R_11678771_SNP [dm6]	T	C	4.744e^-4	0.982	UPSTREAM Buffy DOWNSTREAM Tret1-2 INTRON Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	25221808	3R_25221808_SNP [dm3] 3R_29396086_SNP [dm6]	A	G	4.746e^-4	0.982	INTRON Ptp99A
3R	23468980	3R_23468980_INS [dm3] 3R_27643258_INS [dm6]	C	CGAACTAGCAGC...	4.768e^-4	0.982	UPSTREAM mir-1001 INTRON tau	insulator Insulator_Class_II.mE01
2R	17446601	2R_17446601_SNP [dm3] 2R_21559096_SNP [dm6]	A	G	4.771e^-4	0.982	UTR_3_PRIME Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	4103591	X_4103591_SNP [dm3] X_4209558_SNP [dm6]	A	T	4.790e^-4	0.982	INTERGENIC
3R	14203282	3R_14203282_SNP [dm3] 3R_18377560_SNP [dm6]	T	A	4.791e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC
X	18937670	X_18937670_SNP [dm3] X_19043637_SNP [dm6]	C	T	4.791e^-4	0.982	INTERGENIC
2L	14360027	2L_14360027_SNP [dm3] 2L_14360027_SNP [dm6]	A	G	4.792e^-4	0.982	SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5891600	X_5891600_SNP [dm3] X_5997567_SNP [dm6]	T	C	4.794e^-4	0.982	UTR_3_PRIME CG4766	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11502881	3R_11502881_SNP [dm3] 3R_15677159_SNP [dm6]	T	G	4.798e^-4	0.982	INTRON pxb	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	4245447	2L_4245447_SNP [dm3] 2L_4245447_SNP [dm6]	G	A	4.799e^-4	0.982	DOWNSTREAM CR44059 INTERGENIC
3R	14941859	3R_14941859_SNP [dm3] 3R_19116137_SNP [dm6]	C	T	4.800e^-4	0.982	INTRON CG6040
3R	13727095	3R_13727095_SNP [dm3] 3R_17901373_SNP [dm6]	T	G	4.801e^-4	0.982	INTRON Rim
X	12239910	X_12239910_SNP [dm3] X_12345877_SNP [dm6]	C	T	4.811e^-4	0.982	INTERGENIC
3L	9535171	3L_9535171_SNP [dm3] 3L_9542071_SNP [dm6]	T	A	4.812e^-4	0.982	DOWNSTREAM Ir67a INTERGENIC
3L	8862902	3L_8862902_INS [dm3] 3L_8869802_INS [dm6]	A	ACTAGAACA	4.817e^-4	0.982	INTRON dally
2L	14352150	2L_14352150_SNP [dm3] 2L_14352150_SNP [dm6]	A	C	4.821e^-4	0.982	UTR_5_PRIME CG43052 UPSTREAM l_2_34Fc DOWNSTREAM l_2_34Fd
X	20034851	X_20034851_INS [dm3] X_20140818_INS [dm6]	T	TTTAT	4.826e^-4	0.982	UPSTREAM CG34332 DOWNSTREAM CG42583 & 1 other INTERGENIC
2L	2668763	2L_2668763_SNP [dm3] 2L_2668763_SNP [dm6]	C	T	4.828e^-4	0.982	INTERGENIC
2L	13472107	2L_13472107_SNP [dm3] 2L_13472107_SNP [dm6]	T	C	4.828e^-4	0.982	INTRON CG42784
X	18880121	X_18880121_SNP [dm3] X_18986088_SNP [dm6]	C	G	4.834e^-4	0.982	INTRON CG43759
2R	17964049	2R_17964049_SNP [dm3] 2R_22076544_SNP [dm6]	C	A	4.839e^-4	0.982	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10028701	3L_10028701_SNP [dm3] 3L_10035601_SNP [dm6]	G	A	4.841e^-4	0.982	INTRON dpr6
2L	10013863	2L_10013863_SNP [dm3] 2L_10013863_SNP [dm6]	C	T	4.850e^-4	0.982	NON_SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
X	10743338	X_10743338_SNP [dm3] X_10849305_SNP [dm6]	G	T	4.857e^-4	0.982	NON_SYNONYMOUS_CODING CG2202 DOWNSTREAM CG17333	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10826490	3L_10826490_SNP [dm3] 3L_10833390_SNP [dm6]	A	G	4.858e^-4	0.982	INTERGENIC
3R	16181556	3R_16181556_SNP [dm3] 3R_20355834_SNP [dm6]	C	A	4.866e^-4	0.982	INTERGENIC
2L	4680114	2L_4680114_SNP [dm3] 2L_4680114_SNP [dm6]	A	T	4.867e^-4	0.982	INTERGENIC
2R	7889791	2R_7889791_SNP [dm3] 2R_12002286_SNP [dm6]	A	C	4.872e^-4	0.982	SYNONYMOUS_CODING otk INTRON otk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14686933	X_14686933_SNP [dm3] X_14792900_SNP [dm6]	T	C	4.883e^-4	0.982	INTRON rut
2L	902061	2L_902061_SNP [dm3] 2L_902061_SNP [dm6]	G	A	4.885e^-4	0.982	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	17242681	2L_17242681_SNP [dm3] 2L_17242681_SNP [dm6]	C	A	4.887e^-4	0.982	INTRON beat-IIIc
X	14494660	X_14494660_SNP [dm3] X_14600627_SNP [dm6]	T	C	4.888e^-4	0.982	INTRON CG9413
3L	3147496	3L_3147496_SNP [dm3] 3L_3147496_SNP [dm6]	C	A	4.914e^-4	0.982	INTRON CG12082	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
X	16615898	X_16615898_SNP [dm3] X_16721865_SNP [dm6]	C	T	4.919e^-4	0.982	UPSTREAM CG34325 INTRON CG32572
3L	18100040	3L_18100040_SNP [dm3] 3L_18106940_SNP [dm6]	A	T	4.923e^-4	0.982	UPSTREAM CG13698 DOWNSTREAM CG5147 INTRON mRpS26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18316674	2L_18316674_INS [dm3] 2L_18316674_INS [dm6]	C	CCACCCTC	4.926e^-4	0.982	INTERGENIC
3R	23253202	3R_23253202_SNP [dm3] 3R_27427480_SNP [dm6]	C	T	4.926e^-4	0.982	INTRON side
3R	9278385	3R_9278385_SNP [dm3] 3R_13452663_SNP [dm6]	A	G	4.931e^-4	0.982	INTRON CG14372
3R	10330241	3R_10330241_SNP [dm3] 3R_14504519_SNP [dm6]	A	G	4.938e^-4	0.982	INTRON CR44177	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	908611	3L_908611_SNP [dm3] 3L_908611_SNP [dm6]	T	C	4.944e^-4	0.982	UPSTREAM nerfin-1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	21224727	3L_21224727_SNP [dm3] 3L_21231627_SNP [dm6]	G	A	4.946e^-4	0.982	INTRON Eip78C
2L	11881645	2L_11881645_SNP [dm3] 2L_11881645_SNP [dm6]	T	A	4.955e^-4	0.982	INTRON Pde1c	TF binding site mE1_TFBS_inv
2R	12382247	2R_12382247_SNP [dm3] 2R_16494742_SNP [dm6]	A	T	4.961e^-4	0.982	INTERGENIC
X	20231337	X_20231337_SNP [dm3] X_20360310_SNP [dm6]	C	G	4.968e^-4	0.982	INTERGENIC
2L	15193775	2L_15193775_SNP [dm3] 2L_15193775_SNP [dm6]	T	C	4.970e^-4	0.982	INTRON CG4168
2R	5347988	2R_5347988_INS [dm3] 2R_9460483_INS [dm6]	C	CC	4.971e^-4	0.982	INTRON Camta
2L	7591054	2L_7591054_INS [dm3] 2L_7591054_INS [dm6]	A	AA	4.978e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Kr
3L	10481321	3L_10481321_SNP [dm3] 3L_10488221_SNP [dm6]	G	A	4.993e^-4	0.982	INTRON A2bp1
2R	19083902	2R_19083902_SNP [dm3] 2R_23196379_SNP [dm6]	A	C	5.015e^-4	0.982	INTRON CG34371	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3765184	2L_3765184_SNP [dm3] 2L_3765184_SNP [dm6]	G	A	5.020e^-4	0.982	SYNONYMOUS_CODING CG43707 UPSTREAM CG43703	TF binding site mE1_TFBS_cad
3R	10251218	3R_10251218_SNP [dm3] 3R_14425496_SNP [dm6]	T	A	5.026e^-4	0.982	INTRON cv-c
X	9285944	X_9285944_SNP [dm3] X_9391911_SNP [dm6]	A	G	5.035e^-4	0.982	INTRON mgl
2L	13476914	2L_13476914_SNP [dm3] 2L_13476914_SNP [dm6]	G	C	5.035e^-4	0.982	INTRON CG42784
2L	2761683	2L_2761683_SNP [dm3] 2L_2761683_SNP [dm6]	C	T	5.036e^-4	0.982	INTRON Trn-SR
2L	2761736	2L_2761736_SNP [dm3] 2L_2761736_SNP [dm6]	A	T	5.036e^-4	0.982	NON_SYNONYMOUS_CODING Trn-SR
3L	10481322	3L_10481322_SNP [dm3] 3L_10488222_SNP [dm6]	T	C	5.037e^-4	0.982	INTRON A2bp1
3R	14203325	3R_14203325_SNP [dm3] 3R_18377603_SNP [dm6]	T	C	5.039e^-4	0.982	DOWNSTREAM CG7675 INTERGENIC
X	20900429	X_20900429_SNP [dm3] X_21029402_SNP [dm6]	G	T	5.044e^-4	0.982	UTR_3_PRIME CG1529 DOWNSTREAM CG1529	transposable element FlyBase
3R	23297228	3R_23297228_SNP [dm3] 3R_27471506_SNP [dm6]	G	A	5.051e^-4	0.982	INTERGENIC
3R	23297357	3R_23297357_SNP [dm3] 3R_27471635_SNP [dm6]	A	C	5.051e^-4	0.982	INTERGENIC
2R	11389748	2R_11389748_SNP [dm3] 2R_15502243_SNP [dm6]	G	A	5.053e^-4	0.982	NON_SYNONYMOUS_CODING Ir52b DOWNSTREAM Ir52a
3R	27002929	3R_27002929_SNP [dm3] 3R_31177207_SNP [dm6]	G	A	5.054e^-4	0.982	INTRON Gycbeta100B
2R	11797835	2R_11797835_SNP [dm3] 2R_15910330_SNP [dm6]	C	T	5.054e^-4	0.982	INTRON sli	TF binding site mE1_TFBS_inv
X	5117764	X_5117764_DEL [dm3] X_5223731_DEL [dm6]	TGGGGGGCTTG...	A	5.069e^-4	0.982	INTRON CG15465 & 1 other
2R	11797447	2R_11797447_SNP [dm3] 2R_15909942_SNP [dm6]	A	C	5.076e^-4	0.982	INTRON sli	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18840103	3L_18840103_SNP [dm3] 3L_18847003_SNP [dm6]	C	T	5.082e^-4	0.982	UPSTREAM Indy INTERGENIC
X	14686932	X_14686932_SNP [dm3] X_14792899_SNP [dm6]	T	A	5.101e^-4	0.982	INTRON rut
X	4478249	X_4478249_SNP [dm3] X_4584216_SNP [dm6]	A	T	5.102e^-4	0.982	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	4479021	2R_4479021_SNP [dm3] 2R_8591516_SNP [dm6]	G	C	5.104e^-4	0.982	UPSTREAM CG43183 INTRON CG14752	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27002618	3R_27002618_SNP [dm3] 3R_31176896_SNP [dm6]	C	T	5.111e^-4	0.982	INTRON Gycbeta100B
3L	7248664	3L_7248664_SNP [dm3] 3L_7255564_SNP [dm6]	A	T	5.121e^-4	0.982	INTRON CG14830
3L	14617381	3L_14617381_INS [dm3] 3L_14624281_INS [dm6]	C	CTGATTGAT	5.131e^-4	0.982	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	22228035	X_22228035_SNP [dm3] X_22826199_SNP [dm6]	C	T	5.133e^-4	0.982	UTR_3_PRIME fog
X	10115775	X_10115775_SNP [dm3] X_10221742_SNP [dm6]	A	T	5.146e^-4	0.982	INTRON CG34408
3L	5822944	3L_5822944_INS [dm3] 3L_5829844_INS [dm6]	T	TATGATA	5.146e^-4	0.982	INTRON vn
3L	13642644	3L_13642644_SNP [dm3] 3L_13649544_SNP [dm6]	A	G	5.148e^-4	0.982	INTRON bru-3
2R	6894047	2R_6894047_SNP [dm3] 2R_11006542_SNP [dm6]	A	G	5.153e^-4	0.982	INTRON luna
2L	10266205	2L_10266205_SNP [dm3] 2L_10266205_SNP [dm6]	A	T	5.170e^-4	0.982	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953 DOWNSTREAM CG18619
3R	11499842	3R_11499842_SNP [dm3] 3R_15674120_SNP [dm6]	G	C	5.184e^-4	0.982	INTRON pxb	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_sens
3R	23459301	3R_23459301_SNP [dm3] 3R_27633579_SNP [dm6]	A	G	5.194e^-4	0.982	SYNONYMOUS_CODING Tusp
2L	16174964	2L_16174964_SNP [dm3] 2L_16174964_SNP [dm6]	C	G	5.201e^-4	0.982	SYNONYMOUS_CODING Ca-alpha1D
2R	6001907	2R_6001907_SNP [dm3] 2R_10114402_SNP [dm6]	A	G	5.204e^-4	0.982	INTRON Pfk
2L	20769900	2L_20769900_DEL [dm3] 2L_20769900_DEL [dm6]	CTTTCGAT	C	5.209e^-4	0.982	UPSTREAM cad INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16181750	3R_16181750_SNP [dm3] 3R_20356028_SNP [dm6]	T	G	5.210e^-4	0.982	INTERGENIC
X	14092248	X_14092248_SNP [dm3] X_14198215_SNP [dm6]	T	A	5.228e^-4	0.982	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_chinmo
X	14686923	X_14686923_DEL [dm3] X_14792890_DEL [dm6]	TTA	T	5.232e^-4	0.982	INTRON rut
X	14686928	X_14686928_DEL [dm3] X_14792895_DEL [dm6]	ATT	A	5.232e^-4	0.982	INTRON rut
3L	22925782	3L_22925782_SNP [dm3] 3L_22932682_SNP [dm6]	A	C	5.238e^-4	0.982	INTERGENIC	transposable element FlyBase
3L	3688088	3L_3688088_SNP [dm3] 3L_3688088_SNP [dm6]	C	T	5.242e^-4	0.982	UPSTREAM CR43484 INTERGENIC
3R	23140890	3R_23140890_SNP [dm3] 3R_27315168_SNP [dm6]	G	T	5.242e^-4	0.982	INTRON CG3339	TF binding site mE1_TFBS_chinmo
X	15128157	X_15128157_SNP [dm3] X_15234124_SNP [dm6]	C	T	5.245e^-4	0.982	INTERGENIC
X	8403160	X_8403160_SNP [dm3] X_8509127_SNP [dm6]	G	A	5.255e^-4	0.982	UPSTREAM CG33181 INTRON CG33181
3R	11393791	3R_11393791_SNP [dm3] 3R_15568069_SNP [dm6]	A	G	5.257e^-4	0.982	INTERGENIC
3L	12187706	3L_12187706_SNP [dm3] 3L_12194606_SNP [dm6]	T	C	5.258e^-4	0.982	UPSTREAM thoc6 INTERGENIC	TF binding site mE1_TFBS_zfh1
2L	9460389	2L_9460389_SNP [dm3] 2L_9460389_SNP [dm6]	G	C	5.267e^-4	0.982	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20347974	3L_20347974_SNP [dm3] 3L_20354874_SNP [dm6]	G	T	5.270e^-4	0.982	SYNONYMOUS_CODING CG5618 UTR_5_PRIME CG5618 INTRON CG5618
X	12896753	X_12896753_SNP [dm3] X_13002720_SNP [dm6]	G	T	5.276e^-4	0.982	INTRON rad
2L	12668795	2L_12668795_SNP [dm3] 2L_12668795_SNP [dm6]	G	A	5.279e^-4	0.982	SYNONYMOUS_CODING CG15485 INTRON pdm2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12489382	X_12489382_SNP [dm3] X_12595349_SNP [dm6]	G	T	5.286e^-4	0.982	UPSTREAM Sec16 INTRON CG1824	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15353005	3R_15353005_SNP [dm3] 3R_19527283_SNP [dm6]	A	T	5.289e^-4	0.982	INTRON Dys
2R	9702736	2R_9702736_SNP [dm3] 2R_13815231_SNP [dm6]	T	C	5.309e^-4	0.982	INTRON stj
X	20899987	X_20899987_SNP [dm3] X_21028960_SNP [dm6]	C	G	5.311e^-4	0.982	UTR_3_PRIME CG1529 UPSTREAM CG1532
2L	9189851	2L_9189851_SNP [dm3] 2L_9189851_SNP [dm6]	C	T	5.313e^-4	0.982	INTRON tai	TF binding site mE1_TFBS_HSA
3R	16978279	3R_16978279_DEL [dm3] 3R_21152557_DEL [dm6]	CTCTCT	C	5.317e^-4	0.982	UPSTREAM SNF4Agamma INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26001618	3R_26001618_SNP [dm3] 3R_30175896_SNP [dm6]	C	T	5.319e^-4	0.982	UTR_3_PRIME CG1983 DOWNSTREAM CG1983	regulatory region REDfly_CRMs
3R	11442153	3R_11442153_SNP [dm3] 3R_15616431_SNP [dm6]	A	T	5.322e^-4	0.982	INTERGENIC
2R	14665516	2R_14665516_SNP [dm3] 2R_18778011_SNP [dm6]	A	T	5.325e^-4	0.982	DOWNSTREAM CR43964 INTERGENIC
2L	4680046	2L_4680046_SNP [dm3] 2L_4680046_SNP [dm6]	G	A	5.329e^-4	0.982	INTERGENIC
2L	5623543	2L_5623543_SNP [dm3] 2L_5623543_SNP [dm6]	A	G	5.335e^-4	0.982	SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25628391	3R_25628391_SNP [dm3] 3R_29802669_SNP [dm6]	A	G	5.338e^-4	0.982	UPSTREAM CG7789 INTRON CG7834	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	15416362	X_15416362_SNP [dm3] X_15522329_SNP [dm6]	T	A	5.339e^-4	0.982	UPSTREAM Ac13E INTRON Ac13E
3R	10499804	3R_10499804_SNP [dm3] 3R_14674082_SNP [dm6]	C	T	5.344e^-4	0.982	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	3508450	2R_3508450_SNP [dm3] 2R_7620945_SNP [dm6]	A	T	5.346e^-4	0.982	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	798709	2L_798709_SNP [dm3] 2L_798709_SNP [dm6]	G	C	5.355e^-4	0.982	INTERGENIC
2R	17776490	2R_17776490_SNP [dm3] 2R_21888985_SNP [dm6]	A	C	5.359e^-4	0.982	INTRON Fili
2R	5347993	2R_5347993_SNP [dm3] 2R_9460488_SNP [dm6]	T	A	5.372e^-4	0.982	INTRON Camta
2R	11619097	2R_11619097_SNP [dm3] 2R_15731592_SNP [dm6]	C	T	5.377e^-4	0.982	INTRON CG30089
X	18937671	X_18937671_SNP [dm3] X_19043638_SNP [dm6]	G	A	5.378e^-4	0.982	INTERGENIC
3L	19443600	3L_19443600_SNP [dm3] 3L_19450500_SNP [dm6]	T	C	5.394e^-4	0.982	DOWNSTREAM Chd3 INTERGENIC
3L	14064992	3L_14064992_SNP [dm3] 3L_14071892_SNP [dm6]	T	A	5.395e^-4	0.982	UTR_5_PRIME Pex1 DOWNSTREAM CG32138	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5617923	X_5617923_SNP [dm3] X_5723890_SNP [dm6]	G	A	5.397e^-4	0.982	UPSTREAM CG32758 INTRON CG32758	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6339847	3L_6339847_DEL [dm3] 3L_6346747_DEL [dm6]	CG	A	5.412e^-4	0.982	INTRON CG13300
2L	16213092	2L_16213092_SNP [dm3] 2L_16213092_SNP [dm6]	A	G	5.413e^-4	0.982	INTRON CG31819	TF binding site BDTNP1_TFBS_twi
3L	6726749	3L_6726749_SNP [dm3] 3L_6733649_SNP [dm6]	G	A	5.420e^-4	0.982	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	16445540	3L_16445540_SNP [dm3] 3L_16452440_SNP [dm6]	A	T	5.426e^-4	0.982	UPSTREAM dsx-c73A INTRON CG33158	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10739279	3R_10739279_SNP [dm3] 3R_14913557_SNP [dm6]	C	T	5.433e^-4	0.982	INTERGENIC
3L	9900343	3L_9900343_SNP [dm3] 3L_9907243_SNP [dm6]	C	T	5.442e^-4	0.982	UPSTREAM CG34356 INTERGENIC
2R	7114954	2R_7114954_SNP [dm3] 2R_11227449_SNP [dm6]	C	T	5.445e^-4	0.982	SYNONYMOUS_CODING metro DOWNSTREAM CG7737	TF binding site mE1_TFBS_cad
2R	18858793	2R_18858793_SNP [dm3] 2R_22971270_SNP [dm6]	G	A	5.449e^-4	0.982	INTERGENIC
2L	12119971	2L_12119971_SNP [dm3] 2L_12119971_SNP [dm6]	G	A	5.454e^-4	0.982	INTRON CG17211
2R	16718928	2R_16718928_SNP [dm3] 2R_20831423_SNP [dm6]	C	T	5.462e^-4	0.982	INTRON insc & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	17923201	2R_17923201_SNP [dm3] 2R_22035696_SNP [dm6]	T	A	5.464e^-4	0.982	DOWNSTREAM CG9308 INTRON CG34370
2R	7755831	2R_7755831_SNP [dm3] 2R_11868326_SNP [dm6]	G	A	5.501e^-4	0.982	DOWNSTREAM CR42532 INTRON CG13185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9460876	2L_9460876_SNP [dm3] 2L_9460876_SNP [dm6]	C	A	5.512e^-4	0.982	INTRON numb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	4622857	2L_4622857_SNP [dm3] 2L_4622857_SNP [dm6]	T	G	5.522e^-4	0.982	INTERGENIC
3R	18973531	3R_18973531_SNP [dm3] 3R_23147809_SNP [dm6]	T	G	5.529e^-4	0.982	INTERGENIC	regulatory region REDfly_CRMs
2L	11972936	2L_11972936_SNP [dm3] 2L_11972936_SNP [dm6]	A	G	5.533e^-4	0.982	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19674006	2L_19674006_SNP [dm3] 2L_19674006_SNP [dm6]	C	T	5.533e^-4	0.982	INTRON Lar
X	9893678	X_9893678_SNP [dm3] X_9999645_SNP [dm6]	T	C	5.535e^-4	0.982	SYNONYMOUS_CODING CG32694 INTRON CG32694
X	18752345	X_18752345_SNP [dm3] X_18858312_SNP [dm6]	T	A	5.539e^-4	0.982	SYNONYMOUS_CODING CG7288 UPSTREAM CG7322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
X	20900679	X_20900679_SNP [dm3] X_21029652_SNP [dm6]	C	T	5.542e^-4	0.982	UTR_3_PRIME CG1529 DOWNSTREAM CG1529
3R	26635065	3R_26635065_SNP [dm3] 3R_30809343_SNP [dm6]	C	A	5.544e^-4	0.982	UTR_5_PRIME cindr INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20906904	2L_20906904_SNP [dm3] 2L_20906904_SNP [dm6]	G	T	5.564e^-4	0.982	INTRON sky & 1 other
3L	4487401	3L_4487401_SNP [dm3] 3L_4487401_SNP [dm6]	G	T	5.565e^-4	0.982	SYNONYMOUS_CODING CG13722
X	2520391	X_2520391_SNP [dm3] X_2626358_SNP [dm6]	C	A	5.567e^-4	0.982	NON_SYNONYMOUS_CODING PI4KIIIalpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5752808	3L_5752808_SNP [dm3] 3L_5759708_SNP [dm6]	A	G	5.570e^-4	0.982	NON_SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10863972	2R_10863972_SNP [dm3] 2R_14976467_SNP [dm6]	T	G	5.573e^-4	0.982	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

pc_Femur_Leg_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results