DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.994e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.09798
In_3R_K	0.07230
In_3R_Mo	0.03639

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.9116	0.0858
In_3R_Mo	8.758	0.0125

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1907 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	4.487e^-7	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	4.963e^-7	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	6.531e^-7	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	6.611e^-7	0.265	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	7.060e^-7	0.265	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	9.243e^-7	0.289	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	2.451e^-6	0.656	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	3.773e^-6	0.769	INTRON spg
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	4.613e^-6	0.769	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	4.647e^-6	0.769	INTRON spir
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	4.740e^-6	0.769	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	4.925e^-6	0.769	INTERGENIC	TF binding site mE1_TFBS_sens
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	5.468e^-6	0.788	INTERGENIC
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	6.627e^-6	0.887	INTRON spg
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	7.982e^-6	0.955	DOWNSTREAM CR44629 & 1 other INTERGENIC
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	9.318e^-6	0.955	INTRON nemy
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	9.705e^-6	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	9.705e^-6	0.955	INTRON mam	TF binding site BDTNP1_TFBS_dl
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	1.075e^-5	0.955	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	1.087e^-5	0.955	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	1.119e^-5	0.955	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.165e^-5	0.955	INTERGENIC
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	1.186e^-5	0.955	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	1.302e^-5	0.955	INTERGENIC
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	1.514e^-5	0.955	INTRON Sema-2b
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	1.591e^-5	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.668e^-5	0.955	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	1.687e^-5	0.955	INTERGENIC
X	16722617	X_16722617_SNP [dm3] X_16828584_SNP [dm6]	A	G	1.798e^-5	0.955	UPSTREAM CG13004 INTRON CG13004
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	1.869e^-5	0.955	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
X	16722636	X_16722636_SNP [dm3] X_16828603_SNP [dm6]	A	G	1.924e^-5	0.955	UPSTREAM CG13004 INTRON CG13004
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	1.963e^-5	0.955	INTRON klg
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	2.040e^-5	0.955	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	2.048e^-5	0.955	INTRON spir & 1 other
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	2.066e^-5	0.955	INTERGENIC
2R	7402091	2R_7402091_SNP [dm3] 2R_11514586_SNP [dm6]	C	T	2.097e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.192e^-5	0.955	DOWNSTREAM mthl13 INTRON CG33144
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	2.237e^-5	0.955	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	2.237e^-5	0.955	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18740517	3R_18740517_SNP [dm3] 3R_22914795_SNP [dm6]	A	G	2.272e^-5	0.955	INTRON klg
2R	17786082	2R_17786082_SNP [dm3] 2R_21898577_SNP [dm6]	G	A	2.291e^-5	0.955	INTRON Fili
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	2.399e^-5	0.955	DOWNSTREAM mthl13 INTRON CG33144
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	2.437e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11798043	3L_11798043_SNP [dm3] 3L_11804943_SNP [dm6]	A	G	2.535e^-5	0.955	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	2.566e^-5	0.955	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	2.720e^-5	0.955	DOWNSTREAM CG33460 INTRON CG33461
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	3.221e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	16522079	2R_16522079_SNP [dm3] 2R_20634574_SNP [dm6]	C	A	3.260e^-5	0.955	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	3.269e^-5	0.955	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	3.330e^-5	0.955	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	3.383e^-5	0.955	INTERGENIC
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	3.473e^-5	0.955	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	3.473e^-5	0.955	INTERGENIC
3R	19356813	3R_19356813_SNP [dm3] 3R_23531091_SNP [dm6]	A	T	3.679e^-5	0.955	UPSTREAM CG10175 INTERGENIC
2L	20319073	2L_20319073_SNP [dm3] 2L_20319073_SNP [dm6]	C	G	3.680e^-5	0.955	INTRON spir
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	3.935e^-5	0.955	INTRON Eip63E
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	3.943e^-5	0.955	DOWNSTREAM inv INTERGENIC
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	3.957e^-5	0.955	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	3.959e^-5	0.955	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	4.037e^-5	0.955	INTRON CG6154
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	4.081e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	4.353e^-5	0.955	INTRON Doa
2R	7792376	2R_7792376_SNP [dm3] 2R_11904871_SNP [dm6]	C	A	4.369e^-5	0.955	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	4.398e^-5	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	4.414e^-5	0.955	DOWNSTREAM CG14089 INTRON CG14086
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	4.453e^-5	0.955	INTRON fzy	TF binding site mE1_TFBS_sens
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	4.593e^-5	0.955	INTRON CG5888
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	4.772e^-5	0.955	INTERGENIC
3L	1879245	3L_1879245_SNP [dm3] 3L_1879245_SNP [dm6]	C	T	4.794e^-5	0.955	INTRON CG13937
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	4.800e^-5	0.955	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	4.869e^-5	0.955	INTRON bbg
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	4.934e^-5	0.955	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	5.131e^-5	0.955	INTRON bbg
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	5.260e^-5	0.955	INTRON Wnt6
3R	19232074	3R_19232074_SNP [dm3] 3R_23406352_SNP [dm6]	C	T	5.425e^-5	0.955	SYNONYMOUS_CODING Ir94e
3R	16894862	3R_16894862_SNP [dm3] 3R_21069140_SNP [dm6]	T	C	5.446e^-5	0.955	INTRON AnxB9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4300956	2R_4300956_SNP [dm3] 2R_8413451_SNP [dm6]	T	C	5.520e^-5	0.955	INTERGENIC
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	5.541e^-5	0.955	INTERGENIC
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	5.598e^-5	0.955	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4839904	X_4839904_INS [dm3] X_4945871_INS [dm6]	T	TTTTT	5.641e^-5	0.955	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	5.726e^-5	0.955	INTERGENIC
3L	12997653	3L_12997653_SNP [dm3] 3L_13004553_SNP [dm6]	G	A	5.807e^-5	0.955	INTERGENIC
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	5.821e^-5	0.955	INTRON twin
3L	19277239	3L_19277239_SNP [dm3] 3L_19284139_SNP [dm6]	G	A	5.952e^-5	0.955	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	5.970e^-5	0.955	UPSTREAM CG8012 INTERGENIC
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	6.028e^-5	0.955	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	6.030e^-5	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	6.066e^-5	0.955	SYNONYMOUS_CODING S-Lap2
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	6.134e^-5	0.955	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18941475	3L_18941475_SNP [dm3] 3L_18948375_SNP [dm6]	C	A	6.148e^-5	0.955	INTERGENIC
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	6.155e^-5	0.955	INTERGENIC
3R	4426920	3R_4426920_SNP [dm3] 3R_8601198_SNP [dm6]	C	A	6.238e^-5	0.955	INTRON 5-HT2B
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	6.242e^-5	0.955	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	6.257e^-5	0.955	INTRON Rbp6
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	6.335e^-5	0.955	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7792377	2R_7792377_SNP [dm3] 2R_11904872_SNP [dm6]	T	A	6.403e^-5	0.955	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	6.419e^-5	0.955	UTR_3_PRIME hec DOWNSTREAM fne
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	6.436e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	6.540e^-5	0.955	INTERGENIC
2L	10310614	2L_10310614_SNP [dm3] 2L_10310614_SNP [dm6]	G	T	6.727e^-5	0.955	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
X	16722596	X_16722596_SNP [dm3] X_16828563_SNP [dm6]	G	T	6.733e^-5	0.955	UPSTREAM CG13004 INTRON CG13004
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	6.756e^-5	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	6.883e^-5	0.955	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	6.905e^-5	0.955	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	6.949e^-5	0.955	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	6.965e^-5	0.955	UTR_3_PRIME Sema-2a
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	6.966e^-5	0.955	INTERGENIC
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	6.972e^-5	0.955	INTERGENIC
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	6.994e^-5	0.955	UTR_3_PRIME hec DOWNSTREAM fne
X	12290477	X_12290477_SNP [dm3] X_12396444_SNP [dm6]	C	A	7.144e^-5	0.955	INTERGENIC
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	7.212e^-5	0.955	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	7.267e^-5	0.955	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	7.276e^-5	0.955	INTRON HDAC4
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	7.279e^-5	0.955	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2L	13021327	2L_13021327_SNP [dm3] 2L_13021327_SNP [dm6]	T	A	7.309e^-5	0.955	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17166838	X_17166838_SNP [dm3] X_17272805_SNP [dm6]	T	C	7.472e^-5	0.955	INTRON f	TF binding site mE1_TFBS_cad
3R	22502604	3R_22502604_SNP [dm3] 3R_26676882_SNP [dm6]	A	G	7.543e^-5	0.955	INTRON beat-VII
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	7.633e^-5	0.955	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7751483	2R_7751483_SNP [dm3] 2R_11863978_SNP [dm6]	G	C	7.702e^-5	0.955	UPSTREAM CG42531 & 1 other INTERGENIC
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	7.715e^-5	0.955	SYNONYMOUS_CODING CG9850
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	7.717e^-5	0.955	UPSTREAM CG33225 INTERGENIC
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	7.749e^-5	0.955	INTRON bbg
4	442912	4_442912_SNP [dm3] 4_422286_SNP [dm6]	C	T	7.769e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	7.796e^-5	0.955	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	7.818e^-5	0.955	INTERGENIC
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	7.955e^-5	0.955	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	8.160e^-5	0.955	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	8.177e^-5	0.955	INTERGENIC
3L	9336680	3L_9336680_SNP [dm3] 3L_9343580_SNP [dm6]	G	T	8.219e^-5	0.955	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	8.364e^-5	0.955	SYNONYMOUS_CODING Ir94e
X	12845227	X_12845227_SNP [dm3] X_12951194_SNP [dm6]	G	T	8.427e^-5	0.955	UTR_3_PRIME hec DOWNSTREAM fne
2R	8876181	2R_8876181_SNP [dm3] 2R_12988676_SNP [dm6]	T	C	8.447e^-5	0.955	INTERGENIC
4	494445	4_494445_SNP [dm3] 4_473819_SNP [dm6]	G	A	8.461e^-5	0.955	INTRON Asator
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	8.495e^-5	0.955	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
2R	12476875	2R_12476875_SNP [dm3] 2R_16589370_SNP [dm6]	C	T	8.750e^-5	0.955	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	8.759e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	8.798e^-5	0.955	INTRON a
2R	11467331	2R_11467331_SNP [dm3] 2R_15579826_SNP [dm6]	G	T	8.939e^-5	0.955	INTERGENIC
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	8.981e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	15769112	2R_15769112_DEL [dm3] 2R_19881607_DEL [dm6]	TTT	T	9.047e^-5	0.955	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16381179	3R_16381179_SNP [dm3] 3R_20555457_SNP [dm6]	G	C	9.072e^-5	0.955	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22402628	3R_22402628_SNP [dm3] 3R_26576906_SNP [dm6]	C	T	9.167e^-5	0.955	UTR_3_PRIME scrib INTRON scrib
2R	11469133	2R_11469133_SNP [dm3] 2R_15581628_SNP [dm6]	G	C	9.174e^-5	0.955	INTERGENIC
X	13656637	X_13656637_SNP [dm3] X_13762604_SNP [dm6]	T	G	9.203e^-5	0.955	UPSTREAM rdgB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4300983	2R_4300983_SNP [dm3] 2R_8413478_SNP [dm6]	C	T	9.252e^-5	0.955	INTERGENIC
2R	7398509	2R_7398509_SNP [dm3] 2R_11511004_SNP [dm6]	T	C	9.255e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	9011461	2L_9011461_DEL [dm3] 2L_9011461_DEL [dm6]	ACGC	TA	9.273e^-5	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	19910552	2L_19910552_SNP [dm3] 2L_19910552_SNP [dm6]	T	A	9.282e^-5	0.955	DOWNSTREAM CR43097 INTRON sick
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	9.318e^-5	0.955	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	9.389e^-5	0.955	INTRON sm
3R	6489066	3R_6489066_SNP [dm3] 3R_10663344_SNP [dm6]	G	A	9.478e^-5	0.955	INTERGENIC
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	9.524e^-5	0.955	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	13021316	2L_13021316_SNP [dm3] 2L_13021316_SNP [dm6]	C	A	9.616e^-5	0.955	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	9.688e^-5	0.955	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	9.688e^-5	0.955	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	3120955	3L_3120955_SNP [dm3] 3L_3120955_SNP [dm6]	C	G	9.719e^-5	0.955	NON_SYNONYMOUS_CODING prominin-like DOWNSTREAM tRNA:CR32273
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	9.835e^-5	0.955	INTRON sick
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	9.869e^-5	0.955	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	9.870e^-5	0.955	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	9.880e^-5	0.955	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	9.921e^-5	0.955	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	9.991e^-5	0.955	INTRON Wnt6
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	9.993e^-5	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	1.002e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	1.011e^-4	0.955	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2L	13021373	2L_13021373_SNP [dm3] 2L_13021373_SNP [dm6]	A	G	1.014e^-4	0.955	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13021375	2L_13021375_SNP [dm3] 2L_13021375_SNP [dm6]	T	G	1.014e^-4	0.955	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	1.027e^-4	0.955	INTRON Fili
2L	9014905	2L_9014905_SNP [dm3] 2L_9014905_SNP [dm6]	G	A	1.028e^-4	0.955	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13138840	2L_13138840_SNP [dm3] 2L_13138840_SNP [dm6]	A	G	1.030e^-4	0.955	INTERGENIC
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	1.032e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	5788962	X_5788962_SNP [dm3] X_5894929_SNP [dm6]	G	A	1.045e^-4	0.955	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	1.069e^-4	0.955	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
2R	17504251	2R_17504251_SNP [dm3] 2R_21616746_SNP [dm6]	G	C	1.070e^-4	0.955	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9858559	2L_9858559_SNP [dm3] 2L_9858559_SNP [dm6]	G	T	1.076e^-4	0.955	INTRON nAChRalpha6
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	1.078e^-4	0.955	UPSTREAM bbg INTRON bbg
2L	4955214	2L_4955214_SNP [dm3] 2L_4955214_SNP [dm6]	A	G	1.079e^-4	0.955	UPSTREAM Marcal1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	12470453	2L_12470453_SNP [dm3] 2L_12470453_SNP [dm6]	A	C	1.080e^-4	0.955	INTRON bun
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.087e^-4	0.955	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5764688	2L_5764688_SNP [dm3] 2L_5764688_SNP [dm6]	A	T	1.087e^-4	0.955	INTRON obst-E
2L	5764692	2L_5764692_DEL [dm3] 2L_5764692_DEL [dm6]	AAT	A	1.087e^-4	0.955	INTRON obst-E
2L	5764696	2L_5764696_SNP [dm3] 2L_5764696_SNP [dm6]	T	A	1.087e^-4	0.955	INTRON obst-E
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	1.096e^-4	0.955	INTERGENIC
2R	17141082	2R_17141082_SNP [dm3] 2R_21253577_SNP [dm6]	G	A	1.119e^-4	0.955	INTERGENIC
2R	19619527	2R_19619527_SNP [dm3] 2R_23732004_SNP [dm6]	G	C	1.123e^-4	0.955	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	1.144e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8346053	2L_8346053_SNP [dm3] 2L_8346053_SNP [dm6]	C	T	1.149e^-4	0.955	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	1.154e^-4	0.955	INTRON msi
2L	19929144	2L_19929144_SNP [dm3] 2L_19929144_SNP [dm6]	T	C	1.156e^-4	0.955	INTRON sick
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	1.157e^-4	0.955	INTERGENIC
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	1.161e^-4	0.955	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
4	404139	4_404139_SNP [dm3] 4_383513_SNP [dm6]	C	G	1.161e^-4	0.955	INTRON Lin29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	1.164e^-4	0.955	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	1.183e^-4	0.955	UPSTREAM CG2127 & 1 other INTRON pdm3
X	12844944	X_12844944_SNP [dm3] X_12950911_SNP [dm6]	A	G	1.183e^-4	0.955	UTR_3_PRIME hec DOWNSTREAM hec & 1 other
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	1.188e^-4	0.955	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
3R	24741429	3R_24741429_SNP [dm3] 3R_28915707_SNP [dm6]	T	C	1.190e^-4	0.955	INTRON Doa
2L	9011456	2L_9011456_SNP [dm3] 2L_9011456_SNP [dm6]	T	A	1.191e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	8705308	2L_8705308_SNP [dm3] 2L_8705308_SNP [dm6]	G	A	1.191e^-4	0.955	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	7419459	3L_7419459_SNP [dm3] 3L_7426359_SNP [dm6]	A	T	1.197e^-4	0.955	INTRON CG42458
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	1.218e^-4	0.955	INTRON baz
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	1.221e^-4	0.955	SYNONYMOUS_CODING CG9747
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	1.225e^-4	0.955	UTR_3_PRIME Sema-2a
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	1.225e^-4	0.955	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	1.226e^-4	0.955	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	1.227e^-4	0.955	INTERGENIC
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	1.230e^-4	0.955	DOWNSTREAM CR44026 INTRON baz
2R	16994540	2R_16994540_DEL [dm3] 2R_21107035_DEL [dm6]	TTTCCATTCCT...	T	1.234e^-4	0.955	INTRON ktub
3R	4261680	3R_4261680_SNP [dm3] 3R_8435958_SNP [dm6]	C	G	1.238e^-4	0.955	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18294858	2L_18294858_SNP [dm3] 2L_18294858_SNP [dm6]	G	T	1.242e^-4	0.955	UTR_5_PRIME CG5790 UPSTREAM CR43358	TF binding site mE1_TFBS_inv
X	18414675	X_18414675_SNP [dm3] X_18520642_SNP [dm6]	T	C	1.254e^-4	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
2L	18295289	2L_18295289_SNP [dm3] 2L_18295289_SNP [dm6]	C	T	1.258e^-4	0.955	SYNONYMOUS_CODING CG5790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13035336	X_13035336_SNP [dm3] X_13141303_SNP [dm6]	G	A	1.260e^-4	0.955	INTRON CG32645
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	1.264e^-4	0.955	INTERGENIC
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	1.275e^-4	0.955	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	1.281e^-4	0.955	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	1.284e^-4	0.955	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	11556988	2L_11556988_SNP [dm3] 2L_11556988_SNP [dm6]	T	G	1.290e^-4	0.955	INTERGENIC
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	1.296e^-4	0.955	INTRON mam
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	1.296e^-4	0.955	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19645313	2R_19645313_SNP [dm3] 2R_23757790_SNP [dm6]	G	T	1.299e^-4	0.955	SYNONYMOUS_CODING CG9850
3R	19230778	3R_19230778_SNP [dm3] 3R_23405056_SNP [dm6]	T	C	1.301e^-4	0.955	NON_SYNONYMOUS_CODING Ir94d UPSTREAM Ir94e
2L	16573588	2L_16573588_SNP [dm3] 2L_16573588_SNP [dm6]	G	T	1.306e^-4	0.955	INTRON CG42389
2R	7798323	2R_7798323_SNP [dm3] 2R_11910818_SNP [dm6]	T	G	1.309e^-4	0.955	INTRON CG13183
2R	7800808	2R_7800808_SNP [dm3] 2R_11913303_SNP [dm6]	C	A	1.311e^-4	0.955	UPSTREAM CG13183 INTERGENIC
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	1.313e^-4	0.955	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	1.320e^-4	0.955	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	1.329e^-4	0.955	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	7751507	2R_7751507_SNP [dm3] 2R_11864002_SNP [dm6]	A	T	1.344e^-4	0.955	UPSTREAM CG42531 & 1 other INTERGENIC
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	1.345e^-4	0.955	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2R	12764640	2R_12764640_SNP [dm3] 2R_16877135_SNP [dm6]	A	G	1.372e^-4	0.955	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7400069	2R_7400069_SNP [dm3] 2R_11512564_SNP [dm6]	G	C	1.373e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	1.374e^-4	0.955	UPSTREAM CG44403 INTRON CG10936
2R	13221645	2R_13221645_SNP [dm3] 2R_17334140_SNP [dm6]	A	C	1.378e^-4	0.955	INTRON mbl
2R	12291273	2R_12291273_SNP [dm3] 2R_16403768_SNP [dm6]	C	A	1.381e^-4	0.955	INTRON Sema-2b
2L	9011468	2L_9011468_SNP [dm3] 2L_9011468_SNP [dm6]	A	T	1.394e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	12415255	2L_12415255_SNP [dm3] 2L_12415255_SNP [dm6]	A	T	1.394e^-4	0.955	INTRON vir-1
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	1.401e^-4	0.955	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	1.404e^-4	0.955	DOWNSTREAM CR44792 INTERGENIC
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	1.408e^-4	0.955	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	1.410e^-4	0.955	INTRON hdc
3R	26927768	3R_26927768_SNP [dm3] 3R_31102046_SNP [dm6]	C	T	1.414e^-4	0.955	UPSTREAM CG15553 INTERGENIC
2L	12415253	2L_12415253_SNP [dm3] 2L_12415253_SNP [dm6]	G	A	1.424e^-4	0.955	INTRON vir-1
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	1.426e^-4	0.955	INTRON alph
3L	9336948	3L_9336948_SNP [dm3] 3L_9343848_SNP [dm6]	C	T	1.428e^-4	0.955	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	1.430e^-4	0.955	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	20563824	X_20563824_SNP [dm3] X_20692797_SNP [dm6]	T	C	1.433e^-4	0.955	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	12090681	2R_12090681_SNP [dm3] 2R_16203176_SNP [dm6]	C	T	1.435e^-4	0.955	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	1.437e^-4	0.955	SYNONYMOUS_CODING CG31321
X	6496009	X_6496009_SNP [dm3] X_6601976_SNP [dm6]	G	A	1.438e^-4	0.955	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17230888	3L_17230888_SNP [dm3] 3L_17237788_SNP [dm6]	A	T	1.439e^-4	0.955	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7763382	2R_7763382_SNP [dm3] 2R_11875877_SNP [dm6]	C	T	1.439e^-4	0.955	SYNONYMOUS_CODING CG13185
3L	16720426	3L_16720426_SNP [dm3] 3L_16727326_SNP [dm6]	A	C	1.440e^-4	0.955	UTR_3_PRIME PGRP-SB1 DOWNSTREAM PGRP-SB2	TF binding site mE1_TFBS_cad
2R	12476956	2R_12476956_DEL [dm3] 2R_16589451_DEL [dm6]	AT	A	1.442e^-4	0.955	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	1.444e^-4	0.955	INTERGENIC
2R	12476994	2R_12476994_SNP [dm3] 2R_16589489_SNP [dm6]	T	A	1.446e^-4	0.955	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20418313	2L_20418313_INS [dm3] 2L_20418313_INS [dm6]	G	GCCTTAATT	1.472e^-4	0.955	UPSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	1.473e^-4	0.955	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3R	19356833	3R_19356833_SNP [dm3] 3R_23531111_SNP [dm6]	T	G	1.478e^-4	0.955	UPSTREAM CG10175 INTERGENIC
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	1.490e^-4	0.955	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	1.490e^-4	0.955	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	1.491e^-4	0.955	INTERGENIC
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	1.505e^-4	0.955	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	1.505e^-4	0.955	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17956023	X_17956023_SNP [dm3] X_18061990_SNP [dm6]	T	C	1.507e^-4	0.955	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3L	12645926	3L_12645926_SNP [dm3] 3L_12652826_SNP [dm6]	C	T	1.515e^-4	0.955	INTRON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12039763	2R_12039763_SNP [dm3] 2R_16152258_SNP [dm6]	G	A	1.517e^-4	0.955	INTRON lbk	transposable element FlyBase
3L	1454151	3L_1454151_SNP [dm3] 3L_1454151_SNP [dm6]	A	G	1.544e^-4	0.955	INTRON Ptp61F
2L	20267118	2L_20267118_SNP [dm3] 2L_20267118_SNP [dm6]	C	T	1.552e^-4	0.955	INTERGENIC
X	21895236	X_21895236_SNP [dm3] X_22493400_SNP [dm6]	T	A	1.556e^-4	0.955	INTRON l_1_G0196
3L	11094710	3L_11094710_SNP [dm3] 3L_11101610_SNP [dm6]	C	T	1.568e^-4	0.955	SYNONYMOUS_CODING Elo68beta DOWNSTREAM Elo68alpha
2R	13505961	2R_13505961_SNP [dm3] 2R_17618456_SNP [dm6]	C	T	1.571e^-4	0.955	UPSTREAM CG44403 INTRON CG10936
2L	16886535	2L_16886535_SNP [dm3] 2L_16886535_SNP [dm6]	T	C	1.571e^-4	0.955	DOWNSTREAM CG6115 & 2 others INTERGENIC
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	1.574e^-4	0.955	INTRON sick
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	1.582e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	1.585e^-4	0.955	INTRON sm
2L	14009809	2L_14009809_SNP [dm3] 2L_14009809_SNP [dm6]	A	C	1.587e^-4	0.955	DOWNSTREAM CG42692 & 1 other INTERGENIC
3R	14081131	3R_14081131_SNP [dm3] 3R_18255409_SNP [dm6]	A	C	1.591e^-4	0.955	START_GAINED Ada2a & 1 other UTR_5_PRIME Ada2a & 1 other UPSTREAM moi & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	1.598e^-4	0.955	INTERGENIC
2L	14362790	2L_14362790_SNP [dm3] 2L_14362790_SNP [dm6]	A	G	1.611e^-4	0.955	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	1.614e^-4	0.955	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
2R	4300964	2R_4300964_SNP [dm3] 2R_8413459_SNP [dm6]	C	G	1.629e^-4	0.955	INTERGENIC
X	9803259	X_9803259_SNP [dm3] X_9909226_SNP [dm6]	G	T	1.632e^-4	0.955	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	9336802	3L_9336802_SNP [dm3] 3L_9343702_SNP [dm6]	A	T	1.636e^-4	0.955	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	1.638e^-4	0.955	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	1.639e^-4	0.955	INTRON Hnf4 & 1 other
2L	4130635	2L_4130635_SNP [dm3] 2L_4130635_SNP [dm6]	T	G	1.646e^-4	0.955	INTERGENIC
2L	8346052	2L_8346052_SNP [dm3] 2L_8346052_SNP [dm6]	C	T	1.646e^-4	0.955	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	1.647e^-4	0.955	DOWNSTREAM CR45720 INTERGENIC
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	1.655e^-4	0.955	INTRON drd
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	1.659e^-4	0.955	INTRON Sh
X	17956015	X_17956015_SNP [dm3] X_18061982_SNP [dm6]	C	T	1.660e^-4	0.955	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	1.661e^-4	0.955	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2L	7335484	2L_7335484_SNP [dm3] 2L_7335484_SNP [dm6]	A	G	1.673e^-4	0.955	INTRON Wnt6
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	1.683e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	3093795	2L_3093795_SNP [dm3] 2L_3093795_SNP [dm6]	A	G	1.687e^-4	0.955	INTRON toc
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	1.691e^-4	0.955	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16091210	X_16091210_INS [dm3] X_16197177_INS [dm6]	C	CC	1.700e^-4	0.955	INTERGENIC
2L	7752263	2L_7752263_SNP [dm3] 2L_7752263_SNP [dm6]	G	A	1.703e^-4	0.955	UTR_3_PRIME CG7203 UPSTREAM CR45718
2L	5759821	2L_5759821_SNP [dm3] 2L_5759821_SNP [dm6]	A	T	1.709e^-4	0.955	UTR_3_PRIME CG11030
3R	26995431	3R_26995431_SNP [dm3] 3R_31169709_SNP [dm6]	T	C	1.710e^-4	0.955	UPSTREAM stops INTRON Gycbeta100B
2R	12039758	2R_12039758_SNP [dm3] 2R_16152253_SNP [dm6]	A	T	1.713e^-4	0.955	INTRON lbk	transposable element FlyBase
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	1.720e^-4	0.955	INTRON Sh
3R	26960276	3R_26960276_SNP [dm3] 3R_31134554_SNP [dm6]	C	T	1.726e^-4	0.955	START_GAINED Gycbeta100B UTR_5_PRIME Gycbeta100B
2R	3309327	2R_3309327_SNP [dm3] 2R_7421822_SNP [dm6]	A	G	1.726e^-4	0.955	DOWNSTREAM CR44202 INTRON so	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	1.743e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	1.750e^-4	0.955	UTR_3_PRIME CG31030
2L	14362796	2L_14362796_SNP [dm3] 2L_14362796_SNP [dm6]	A	T	1.772e^-4	0.955	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7428020	3L_7428020_SNP [dm3] 3L_7434920_SNP [dm6]	G	C	1.772e^-4	0.955	UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13221603	2R_13221603_SNP [dm3] 2R_17334098_SNP [dm6]	G	A	1.787e^-4	0.955	INTRON mbl
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	1.787e^-4	0.955	INTRON mbl
2L	12148324	2L_12148324_SNP [dm3] 2L_12148324_SNP [dm6]	C	T	1.791e^-4	0.955	INTRON CG31760
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.792e^-4	0.955	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	8346118	2L_8346118_SNP [dm3] 2L_8346118_SNP [dm6]	G	T	1.796e^-4	0.955	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16091223	X_16091223_SNP [dm3] X_16197190_SNP [dm6]	T	C	1.826e^-4	0.955	INTERGENIC
3R	25762240	3R_25762240_SNP [dm3] 3R_29936518_SNP [dm6]	G	A	1.828e^-4	0.955	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	1.833e^-4	0.955	INTRON CG9850
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	1.840e^-4	0.955	INTRON bbg
2L	4130637	2L_4130637_SNP [dm3] 2L_4130637_SNP [dm6]	C	G	1.843e^-4	0.955	INTERGENIC
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	1.843e^-4	0.955	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7399725	2R_7399725_SNP [dm3] 2R_11512220_SNP [dm6]	G	C	1.844e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	17174848	3L_17174848_SNP [dm3] 3L_17181748_SNP [dm6]	C	T	1.845e^-4	0.955	INTRON Rbp6
2L	7335518	2L_7335518_DEL [dm3] 2L_7335518_DEL [dm6]	CTACAA	C	1.860e^-4	0.955	INTRON Wnt6
2L	10164425	2L_10164425_DEL [dm3] 2L_10164425_DEL [dm6]	ATTA	A	1.863e^-4	0.955	INTRON CG44153
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	1.867e^-4	0.955	DOWNSTREAM mbl INTRON mbl
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	1.877e^-4	0.955	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	1.886e^-4	0.955	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	1.889e^-4	0.955	INTRON vir-1
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	1.892e^-4	0.955	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	1.895e^-4	0.955	INTERGENIC
3R	22553871	3R_22553871_SNP [dm3] 3R_26728149_SNP [dm6]	C	T	1.898e^-4	0.955	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
X	20451509	X_20451509_SNP [dm3] X_20580482_SNP [dm6]	T	A	1.901e^-4	0.955	INTERGENIC
3R	22219015	3R_22219015_SNP [dm3] 3R_26393293_SNP [dm6]	T	A	1.903e^-4	0.955	INTERGENIC
X	20563794	X_20563794_SNP [dm3] X_20692767_SNP [dm6]	A	G	1.903e^-4	0.955	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	1.907e^-4	0.955	DOWNSTREAM CG17199 INTRON Nlg4
2L	14009807	2L_14009807_SNP [dm3] 2L_14009807_SNP [dm6]	T	A	1.908e^-4	0.955	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	1.909e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19568721	2R_19568721_SNP [dm3] 2R_23681198_SNP [dm6]	A	T	1.910e^-4	0.955	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
3R	5745003	3R_5745003_SNP [dm3] 3R_9919281_SNP [dm6]	G	A	1.912e^-4	0.955	INTRON Glut4EF
3R	26008311	3R_26008311_SNP [dm3] 3R_30182589_SNP [dm6]	G	A	1.912e^-4	0.955	INTERGENIC
3R	26995435	3R_26995435_SNP [dm3] 3R_31169713_SNP [dm6]	C	A	1.918e^-4	0.955	UPSTREAM stops INTRON Gycbeta100B
2R	12476945	2R_12476945_SNP [dm3] 2R_16589440_SNP [dm6]	A	T	1.918e^-4	0.955	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14417953	3L_14417953_SNP [dm3] 3L_14424853_SNP [dm6]	A	T	1.919e^-4	0.955	INTRON bbg
2R	1438916	2R_1438916_INS [dm3] 2R_5551411_INS [dm6]	A	AAGATT	1.932e^-4	0.955	INTERGENIC	transposable element FlyBase
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	1.939e^-4	0.955	INTRON Eip63E
2L	10310599	2L_10310599_SNP [dm3] 2L_10310599_SNP [dm6]	T	G	1.942e^-4	0.955	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	14362763	2L_14362763_SNP [dm3] 2L_14362763_SNP [dm6]	G	A	1.943e^-4	0.955	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6891432	2L_6891432_SNP [dm3] 2L_6891432_SNP [dm6]	C	T	1.946e^-4	0.955	INTRON Nlg2
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	1.948e^-4	0.955	UPSTREAM para INTERGENIC
3R	15175536	3R_15175536_SNP [dm3] 3R_19349814_SNP [dm6]	A	G	1.951e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	18414525	X_18414525_SNP [dm3] X_18520492_SNP [dm6]	C	T	1.952e^-4	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	1.968e^-4	0.955	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19660044	2R_19660044_SNP [dm3] 2R_23772521_SNP [dm6]	C	T	1.969e^-4	0.955	INTRON CG9850
2R	13221670	2R_13221670_SNP [dm3] 2R_17334165_SNP [dm6]	T	C	1.973e^-4	0.955	INTRON mbl
3L	10265934	3L_10265934_SNP [dm3] 3L_10272834_SNP [dm6]	G	T	1.982e^-4	0.955	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	20267013	2L_20267013_SNP [dm3] 2L_20267013_SNP [dm6]	G	A	1.986e^-4	0.955	INTERGENIC
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	1.990e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26318078	3R_26318078_SNP [dm3] 3R_30492356_SNP [dm6]	G	A	2.000e^-4	0.955	SPLICE_SITE_REGION PH4alphaMP DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3R	26935989	3R_26935989_SNP [dm3] 3R_31110267_SNP [dm6]	T	C	2.000e^-4	0.955	INTERGENIC
2R	11072270	2R_11072270_INS [dm3] 2R_15184765_INS [dm6]	G	GCAGACAGATG...	2.020e^-4	0.955	UPSTREAM CG43068 INTRON igl
3L	11698270	3L_11698270_SNP [dm3] 3L_11705170_SNP [dm6]	A	C	2.028e^-4	0.955	INTRON CG11658
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	2.047e^-4	0.955	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	11699174	3L_11699174_SNP [dm3] 3L_11706074_SNP [dm6]	C	T	2.057e^-4	0.955	INTRON CG11658
3R	26008294	3R_26008294_SNP [dm3] 3R_30182572_SNP [dm6]	T	G	2.065e^-4	0.955	INTERGENIC
2R	12039752	2R_12039752_SNP [dm3] 2R_16152247_SNP [dm6]	A	T	2.072e^-4	0.955	INTRON lbk	transposable element FlyBase
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	2.073e^-4	0.955	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2L	12353527	2L_12353527_SNP [dm3] 2L_12353527_SNP [dm6]	G	A	2.073e^-4	0.955	INTRON bru-2
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	2.075e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14228649	3R_14228649_SNP [dm3] 3R_18402927_SNP [dm6]	G	A	2.086e^-4	0.955	UPSTREAM koko & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	16397509	2L_16397509_SNP [dm3] 2L_16397509_SNP [dm6]	G	A	2.091e^-4	0.955	INTERGENIC
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	2.092e^-4	0.955	INTRON CG13698
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	2.095e^-4	0.955	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2L	6953894	2L_6953894_SNP [dm3] 2L_6953894_SNP [dm6]	T	C	2.101e^-4	0.955	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
2L	9011467	2L_9011467_SNP [dm3] 2L_9011467_SNP [dm6]	T	A	2.107e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	9011459	2L_9011459_SNP [dm3] 2L_9011459_SNP [dm6]	G	A	2.111e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	2.123e^-4	0.955	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	2.124e^-4	0.955	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9937666	2R_9937666_SNP [dm3] 2R_14050161_SNP [dm6]	C	T	2.127e^-4	0.955	INTRON mam	TF binding site BDTNP1_TFBS_prd
2L	712504	2L_712504_SNP [dm3] 2L_712504_SNP [dm6]	G	A	2.128e^-4	0.955	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	2.132e^-4	0.955	INTRON CG30463
3R	20301160	3R_20301160_SNP [dm3] 3R_24475438_SNP [dm6]	G	C	2.138e^-4	0.955	INTERGENIC
2L	5849407	2L_5849407_SNP [dm3] 2L_5849407_SNP [dm6]	T	A	2.139e^-4	0.955	INTRON TrissinR
2R	9484121	2R_9484121_SNP [dm3] 2R_13596616_SNP [dm6]	G	A	2.144e^-4	0.955	UPSTREAM S-Lap5 DOWNSTREAM CG6197 INTERGENIC	TF binding site mE1_TFBS_cad
2R	5868148	2R_5868148_SNP [dm3] 2R_9980643_SNP [dm6]	C	A	2.148e^-4	0.955	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18414671	X_18414671_SNP [dm3] X_18520638_SNP [dm6]	C	T	2.154e^-4	0.955	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	19016396	3L_19016396_SNP [dm3] 3L_19023296_SNP [dm6]	C	A	2.158e^-4	0.955	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3R	22515239	3R_22515239_SNP [dm3] 3R_26689517_SNP [dm6]	G	T	2.158e^-4	0.955	INTERGENIC
2L	19967109	2L_19967109_SNP [dm3] 2L_19967109_SNP [dm6]	G	C	2.162e^-4	0.955	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad
3R	25982923	3R_25982923_SNP [dm3] 3R_30157201_SNP [dm6]	G	T	2.171e^-4	0.955	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24824359	3R_24824359_SNP [dm3] 3R_28998637_SNP [dm6]	A	T	2.173e^-4	0.955	INTRON wat
2R	13367791	2R_13367791_SNP [dm3] 2R_17480286_SNP [dm6]	T	A	2.177e^-4	0.955	UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
2L	14009811	2L_14009811_SNP [dm3] 2L_14009811_SNP [dm6]	T	A	2.177e^-4	0.955	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	2.177e^-4	0.955	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
2R	9814393	2R_9814393_SNP [dm3] 2R_13926888_SNP [dm6]	C	A	2.178e^-4	0.955	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22901000	3R_22901000_SNP [dm3] 3R_27075278_SNP [dm6]	A	T	2.178e^-4	0.955	UPSTREAM CG14257 INTERGENIC
2R	8342949	2R_8342949_SNP [dm3] 2R_12455444_SNP [dm6]	G	T	2.179e^-4	0.955	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	2.187e^-4	0.955	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	6535405	2L_6535405_SNP [dm3] 2L_6535405_SNP [dm6]	A	G	2.192e^-4	0.955	INTRON eya	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	26960697	3R_26960697_SNP [dm3] 3R_31134975_SNP [dm6]	T	C	2.197e^-4	0.955	INTRON Gycbeta100B
3R	10035790	3R_10035790_SNP [dm3] 3R_14210068_SNP [dm6]	A	C	2.198e^-4	0.955	INTRON Dop1R1
3L	9336955	3L_9336955_SNP [dm3] 3L_9343855_SNP [dm6]	C	T	2.206e^-4	0.955	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	4395921	3R_4395921_SNP [dm3] 3R_8570199_SNP [dm6]	C	T	2.212e^-4	0.955	DOWNSTREAM Cenp-C INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	2.218e^-4	0.955	UPSTREAM Ndae1 INTRON Ndae1
X	5086569	X_5086569_SNP [dm3] X_5192536_SNP [dm6]	G	A	2.221e^-4	0.955	INTRON rg & 1 other	TF binding site mE1_TFBS_Trl
3R	19232059	3R_19232059_SNP [dm3] 3R_23406337_SNP [dm6]	A	G	2.229e^-4	0.955	SYNONYMOUS_CODING Ir94e
2R	7751412	2R_7751412_SNP [dm3] 2R_11863907_SNP [dm6]	T	A	2.246e^-4	0.955	UPSTREAM CG42531 & 1 other INTERGENIC
4	414609	4_414609_SNP [dm3] 4_393983_SNP [dm6]	T	C	2.246e^-4	0.955	UTR_5_PRIME Lin29 UPSTREAM Lin29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	2.254e^-4	0.955	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	2.255e^-4	0.955	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4238225	2L_4238225_SNP [dm3] 2L_4238225_SNP [dm6]	C	T	2.278e^-4	0.955	INTERGENIC
X	6528352	X_6528352_SNP [dm3] X_6634319_SNP [dm6]	C	A	2.288e^-4	0.955	NON_SYNONYMOUS_CODING CG14443 INTRON pigs
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	2.297e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26963999	3R_26963999_SNP [dm3] 3R_31138277_SNP [dm6]	G	A	2.304e^-4	0.955	INTRON Gycbeta100B
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	2.321e^-4	0.955	UPSTREAM para INTERGENIC
2R	13535330	2R_13535330_SNP [dm3] 2R_17647825_SNP [dm6]	G	A	2.322e^-4	0.955	SYNONYMOUS_CODING CCHa1-R
2L	3093790	2L_3093790_SNP [dm3] 2L_3093790_SNP [dm6]	C	T	2.323e^-4	0.955	INTRON toc
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	2.326e^-4	0.955	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7763463	2R_7763463_SNP [dm3] 2R_11875958_SNP [dm6]	A	C	2.344e^-4	0.955	SYNONYMOUS_CODING CG13185
2L	7341740	2L_7341740_SNP [dm3] 2L_7341740_SNP [dm6]	C	T	2.373e^-4	0.955	INTRON Wnt6
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	2.381e^-4	0.955	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4315485	X_4315485_SNP [dm3] X_4421452_SNP [dm6]	T	C	2.381e^-4	0.955	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	4109437	2L_4109437_SNP [dm3] 2L_4109437_SNP [dm6]	C	T	2.397e^-4	0.955	INTRON ed
3L	19039984	3L_19039984_SNP [dm3] 3L_19046884_SNP [dm6]	T	G	2.407e^-4	0.955	INTERGENIC
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	2.415e^-4	0.955	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	2.415e^-4	0.955	INTRON CG15465 & 1 other
2R	1490574	2R_1490574_SNP [dm3] 2R_5603069_SNP [dm6]	T	A	2.416e^-4	0.955	DOWNSTREAM Fis1 INTERGENIC
2L	9011470	2L_9011470_SNP [dm3] 2L_9011470_SNP [dm6]	T	C	2.418e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	6953049	2L_6953049_SNP [dm3] 2L_6953049_SNP [dm6]	T	C	2.421e^-4	0.955	SYNONYMOUS_CODING SA
3R	22504628	3R_22504628_SNP [dm3] 3R_26678906_SNP [dm6]	T	C	2.423e^-4	0.955	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26008966	3R_26008966_SNP [dm3] 3R_30183244_SNP [dm6]	C	T	2.424e^-4	0.955	DOWNSTREAM CR44262 INTERGENIC
2L	5563204	2L_5563204_SNP [dm3] 2L_5563204_SNP [dm6]	A	T	2.431e^-4	0.955	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	2.439e^-4	0.955	INTRON spir & 1 other
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	2.440e^-4	0.955	INTRON lilli	TF binding site mE1_TFBS_Trl
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	2.443e^-4	0.955	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	15372445	2L_15372445_SNP [dm3] 2L_15372445_SNP [dm6]	T	C	2.443e^-4	0.955	INTERGENIC
3R	23475934	3R_23475934_SNP [dm3] 3R_27650212_SNP [dm6]	T	C	2.447e^-4	0.955	DOWNSTREAM tau INTRON tau
2R	9814399	2R_9814399_SNP [dm3] 2R_13926894_SNP [dm6]	C	T	2.453e^-4	0.955	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	1487348	2R_1487348_SNP [dm3] 2R_5599843_SNP [dm6]	T	A	2.454e^-4	0.955	INTERGENIC	transposable element FlyBase
X	21356334	X_21356334_SNP [dm3] X_21485307_SNP [dm6]	T	C	2.477e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11409462	2R_11409462_SNP [dm3] 2R_15521957_SNP [dm6]	G	A	2.480e^-4	0.955	INTRON Khc-73
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	2.480e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	10091692	2R_10091692_SNP [dm3] 2R_14204187_SNP [dm6]	C	T	2.483e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	2.497e^-4	0.955	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26946345	3R_26946345_SNP [dm3] 3R_31120623_SNP [dm6]	C	A	2.505e^-4	0.955	INTERGENIC
3L	13031129	3L_13031129_SNP [dm3] 3L_13038029_SNP [dm6]	C	G	2.506e^-4	0.955	SYNONYMOUS_CODING SRm160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
4	361373	4_361373_SNP [dm3] 4_340747_SNP [dm6]	T	A	2.506e^-4	0.955	INTRON PMCA
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	2.508e^-4	0.955	INTRON Wnt6
2R	7798461	2R_7798461_SNP [dm3] 2R_11910956_SNP [dm6]	A	T	2.513e^-4	0.955	INTRON CG13183
X	11152490	X_11152490_SNP [dm3] X_11258457_SNP [dm6]	T	C	2.523e^-4	0.955	INTRON CG44422
2R	11479209	2R_11479209_SNP [dm3] 2R_15591704_SNP [dm6]	G	A	2.526e^-4	0.955	INTERGENIC
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	2.529e^-4	0.955	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19913638	2L_19913638_INS [dm3] 2L_19913638_INS [dm6]	T	TT	2.534e^-4	0.955	UPSTREAM Victoria INTRON sick
2R	13535345	2R_13535345_SNP [dm3] 2R_17647840_SNP [dm6]	G	A	2.540e^-4	0.955	SYNONYMOUS_CODING CCHa1-R
2R	13247195	2R_13247195_SNP [dm3] 2R_17359690_SNP [dm6]	T	G	2.544e^-4	0.955	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	2.545e^-4	0.955	INTERGENIC
2L	7746068	2L_7746068_SNP [dm3] 2L_7746068_SNP [dm6]	T	A	2.547e^-4	0.955	INTERGENIC
2L	18145382	2L_18145382_SNP [dm3] 2L_18145382_SNP [dm6]	G	T	2.549e^-4	0.955	INTRON Socs36E EXON CR44478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	5701703	X_5701703_SNP [dm3] X_5807670_SNP [dm6]	A	G	2.550e^-4	0.955	INTERGENIC
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	2.556e^-4	0.955	UPSTREAM CG15403 INTRON toc
4	504402	4_504402_DEL [dm3] 4_483776_DEL [dm6]	GG	G	2.560e^-4	0.955	UTR_5_PRIME Asator INTRON Asator
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	2.570e^-4	0.955	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11474564	2R_11474564_SNP [dm3] 2R_15587059_SNP [dm6]	T	C	2.572e^-4	0.955	INTERGENIC
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	2.587e^-4	0.955	INTRON msi
2L	6820091	2L_6820091_SNP [dm3] 2L_6820091_SNP [dm6]	T	C	2.589e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D
2R	16522034	2R_16522034_SNP [dm3] 2R_20634529_SNP [dm6]	A	G	2.597e^-4	0.955	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	16522052	2R_16522052_SNP [dm3] 2R_20634547_SNP [dm6]	C	T	2.597e^-4	0.955	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	8551442	2R_8551442_SNP [dm3] 2R_12663937_SNP [dm6]	A	G	2.597e^-4	0.955	INTRON nemy
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	2.599e^-4	0.955	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3L	11698588	3L_11698588_SNP [dm3] 3L_11705488_SNP [dm6]	G	C	2.608e^-4	0.955	INTRON CG11658
3R	26995434	3R_26995434_SNP [dm3] 3R_31169712_SNP [dm6]	A	G	2.609e^-4	0.955	UPSTREAM stops INTRON Gycbeta100B
2R	10091619	2R_10091619_SNP [dm3] 2R_14204114_SNP [dm6]	G	A	2.620e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	3964524	2L_3964524_SNP [dm3] 2L_3964524_SNP [dm6]	G	A	2.620e^-4	0.955	INTRON fred
2R	12090757	2R_12090757_SNP [dm3] 2R_16203252_SNP [dm6]	G	A	2.629e^-4	0.955	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	1490196	2R_1490196_SNP [dm3] 2R_5602691_SNP [dm6]	G	C	2.637e^-4	0.955	DOWNSTREAM Fis1 INTERGENIC
3R	25738543	3R_25738543_SNP [dm3] 3R_29912821_SNP [dm6]	C	T	2.637e^-4	0.955	UTR_3_PRIME CG31036 DOWNSTREAM Capa
3R	10884247	3R_10884247_SNP [dm3] 3R_15058525_SNP [dm6]	G	T	2.647e^-4	0.955	INTRON dpr9
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	2.657e^-4	0.955	INTRON Eip63E
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	2.665e^-4	0.955	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	2.665e^-4	0.955	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14080173	3R_14080173_SNP [dm3] 3R_18254451_SNP [dm6]	A	G	2.667e^-4	0.955	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
3L	18946208	3L_18946208_SNP [dm3] 3L_18953108_SNP [dm6]	T	A	2.676e^-4	0.955	INTRON CG6836
2L	712537	2L_712537_SNP [dm3] 2L_712537_SNP [dm6]	C	A	2.681e^-4	0.955	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	2.684e^-4	0.955	INTRON beat-Ib
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	2.696e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	2.705e^-4	0.955	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	24085077	3R_24085077_SNP [dm3] 3R_28259355_SNP [dm6]	G	A	2.716e^-4	0.955	INTERGENIC
2R	17348585	2R_17348585_DEL [dm3] 2R_21461080_DEL [dm6]	AA	A	2.717e^-4	0.955	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	2.725e^-4	0.955	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2R	13340615	2R_13340615_SNP [dm3] 2R_17453110_SNP [dm6]	C	T	2.728e^-4	0.955	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17316616	2L_17316616_SNP [dm3] 2L_17316616_SNP [dm6]	C	G	2.731e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3402881	2L_3402881_SNP [dm3] 2L_3402881_SNP [dm6]	T	G	2.734e^-4	0.955	INTERGENIC
3R	26995455	3R_26995455_SNP [dm3] 3R_31169733_SNP [dm6]	C	T	2.735e^-4	0.955	UPSTREAM stops INTRON Gycbeta100B
2L	16230363	2L_16230363_SNP [dm3] 2L_16230363_SNP [dm6]	A	T	2.739e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	7803672	2R_7803672_SNP [dm3] 2R_11916167_SNP [dm6]	G	T	2.741e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15214865	3R_15214865_SNP [dm3] 3R_19389143_SNP [dm6]	C	T	2.748e^-4	0.955	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	19913640	2L_19913640_SNP [dm3] 2L_19913640_SNP [dm6]	T	G	2.751e^-4	0.955	UPSTREAM Victoria INTRON sick
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	2.753e^-4	0.955	INTRON CG32365
3R	15081550	3R_15081550_SNP [dm3] 3R_19255828_SNP [dm6]	T	C	2.758e^-4	0.955	UPSTREAM CG14280 INTERGENIC
2L	9011489	2L_9011489_SNP [dm3] 2L_9011489_SNP [dm6]	T	A	2.760e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	2.771e^-4	0.955	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	17785940	2R_17785940_SNP [dm3] 2R_21898435_SNP [dm6]	G	T	2.780e^-4	0.955	INTRON Fili
2L	6309366	2L_6309366_SNP [dm3] 2L_6309366_SNP [dm6]	G	T	2.781e^-4	0.955	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	26936150	3R_26936150_SNP [dm3] 3R_31110428_SNP [dm6]	T	C	2.784e^-4	0.955	INTERGENIC
2L	18420946	2L_18420946_SNP [dm3] 2L_18420946_SNP [dm6]	C	T	2.785e^-4	0.955	INTERGENIC
4	362690	4_362690_DEL [dm3] 4_342064_DEL [dm6]	ATT	A	2.789e^-4	0.955	INTRON PMCA
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	2.791e^-4	0.955	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3R	18343321	3R_18343321_SNP [dm3] 3R_22517599_SNP [dm6]	T	A	2.800e^-4	0.955	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2L	8657873	2L_8657873_SNP [dm3] 2L_8657873_SNP [dm6]	T	C	2.801e^-4	0.955	INTRON Sema-1a
X	12141627	X_12141627_SNP [dm3] X_12247594_SNP [dm6]	G	A	2.808e^-4	0.955	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	2.814e^-4	0.955	INTERGENIC
3R	26005348	3R_26005348_SNP [dm3] 3R_30179626_SNP [dm6]	A	T	2.816e^-4	0.955	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	18806015	3R_18806015_SNP [dm3] 3R_22980293_SNP [dm6]	G	A	2.828e^-4	0.955	INTERGENIC
3L	722516	3L_722516_SNP [dm3] 3L_722516_SNP [dm6]	C	T	2.830e^-4	0.955	INTERGENIC
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	2.834e^-4	0.955	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
3R	26934001	3R_26934001_SNP [dm3] 3R_31108279_SNP [dm6]	C	T	2.835e^-4	0.955	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12699783	2R_12699783_SNP [dm3] 2R_16812278_SNP [dm6]	T	A	2.842e^-4	0.955	EXON CR44379
3R	20301148	3R_20301148_SNP [dm3] 3R_24475426_SNP [dm6]	C	T	2.842e^-4	0.955	INTERGENIC
3R	19232020	3R_19232020_SNP [dm3] 3R_23406298_SNP [dm6]	T	G	2.844e^-4	0.955	SYNONYMOUS_CODING Ir94e
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	2.860e^-4	0.955	INTRON lilli
3R	25927653	3R_25927653_SNP [dm3] 3R_30101931_SNP [dm6]	T	A	2.864e^-4	0.955	INTRON sima
3R	25922638	3R_25922638_SNP [dm3] 3R_30096916_SNP [dm6]	C	T	2.871e^-4	0.955	INTRON sima	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	16041686	3R_16041686_SNP [dm3] 3R_20215964_SNP [dm6]	T	G	2.883e^-4	0.955	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2L	7341713	2L_7341713_SNP [dm3] 2L_7341713_SNP [dm6]	A	T	2.888e^-4	0.955	INTRON Wnt6
2L	7768696	2L_7768696_INS [dm3] 2L_7768696_INS [dm6]	T	TGAACGCATT	2.892e^-4	0.955	INTRON CG7191
3L	4503830	3L_4503830_SNP [dm3] 3L_4503830_SNP [dm6]	A	C	2.896e^-4	0.955	DOWNSTREAM NT1 INTRON NT1
4	404293	4_404293_SNP [dm3] 4_383667_SNP [dm6]	G	A	2.899e^-4	0.955	INTRON Lin29	TF binding site BDTNP1_TFBS_dl
2L	13021270	2L_13021270_SNP [dm3] 2L_13021270_SNP [dm6]	T	A	2.911e^-4	0.955	START_GAINED A16 UTR_5_PRIME A16 DOWNSTREAM CG9932	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7375228	2R_7375228_SNP [dm3] 2R_11487723_SNP [dm6]	T	C	2.914e^-4	0.955	INTRON inv
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	2.920e^-4	0.955	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	2.920e^-4	0.955	INTRON baz
X	2346800	X_2346800_SNP [dm3] X_2452767_SNP [dm6]	C	T	2.935e^-4	0.955	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	2.937e^-4	0.955	INTRON FMRFaR
X	11599335	X_11599335_SNP [dm3] X_11705302_SNP [dm6]	C	G	2.956e^-4	0.955	UPSTREAM CG2444 DOWNSTREAM PhKgamma INTERGENIC	TF binding site mE1_TFBS_cad
3L	1361603	3L_1361603_DEL [dm3] 3L_1361603_DEL [dm6]	CTATTTCCAAGC...	C	2.960e^-4	0.955	INTRON Ptp61F
X	5701676	X_5701676_SNP [dm3] X_5807643_SNP [dm6]	T	C	2.966e^-4	0.955	INTERGENIC
2R	10091690	2R_10091690_SNP [dm3] 2R_14204185_SNP [dm6]	G	A	2.979e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7375425	2R_7375425_SNP [dm3] 2R_11487920_SNP [dm6]	G	T	2.996e^-4	0.955	INTRON inv
X	12845743	X_12845743_SNP [dm3] X_12951710_SNP [dm6]	G	A	2.997e^-4	0.955	INTRON hec
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	3.001e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	3.001e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	3.001e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	3.001e^-4	0.955	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	8046505	3L_8046505_SNP [dm3] 3L_8053405_SNP [dm6]	T	C	3.003e^-4	0.955	UTR_3_PRIME nmo DOWNSTREAM nmo & 1 other
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	3.008e^-4	0.955	DOWNSTREAM CG8086 & 1 other INTRON CG43057
2L	18139105	2L_18139105_SNP [dm3] 2L_18139105_SNP [dm6]	C	T	3.013e^-4	0.955	UTR_3_PRIME Socs36E
3R	26807821	3R_26807821_SNP [dm3] 3R_30982099_SNP [dm6]	A	T	3.036e^-4	0.955	INTRON 5-HT7
3R	22219018	3R_22219018_SNP [dm3] 3R_26393296_SNP [dm6]	T	G	3.036e^-4	0.955	INTERGENIC
3L	2868383	3L_2868383_SNP [dm3] 3L_2868383_SNP [dm6]	A	C	3.038e^-4	0.955	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	12090765	2R_12090765_DEL [dm3] 2R_16203260_DEL [dm6]	TGCATC	T	3.038e^-4	0.955	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	2675315	2L_2675315_DEL [dm3] 2L_2675315_DEL [dm6]	GGA	G	3.042e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
3L	692656	3L_692656_SNP [dm3] 3L_692656_SNP [dm6]	T	G	3.042e^-4	0.955	DOWNSTREAM RabX6 & 1 other INTRON Vti1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	3.046e^-4	0.955	INTRON beat-IV
X	3904226	X_3904226_SNP [dm3] X_4010193_SNP [dm6]	T	G	3.050e^-4	0.955	INTERGENIC
3R	25437387	3R_25437387_SNP [dm3] 3R_29611665_SNP [dm6]	A	T	3.060e^-4	0.955	INTRON alph
2R	8551438	2R_8551438_SNP [dm3] 2R_12663933_SNP [dm6]	T	A	3.069e^-4	0.955	INTRON nemy
X	7612623	X_7612623_SNP [dm3] X_7718590_SNP [dm6]	C	G	3.070e^-4	0.955	UPSTREAM CG15478 INTERGENIC
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	3.073e^-4	0.955	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	19900754	3R_19900754_SNP [dm3] 3R_24075032_SNP [dm6]	G	A	3.076e^-4	0.955	INTRON 4EHP
2R	7403431	2R_7403431_SNP [dm3] 2R_11515926_SNP [dm6]	C	T	3.080e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7338235	2R_7338235_SNP [dm3] 2R_11450730_SNP [dm6]	T	A	3.102e^-4	0.955	UTR_3_PRIME qvr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	3.123e^-4	0.955	INTRON blow	TF binding site mE1_TFBS_chinmo
2R	1487151	2R_1487151_SNP [dm3] 2R_5599646_SNP [dm6]	C	G	3.125e^-4	0.955	INTERGENIC	transposable element FlyBase
3R	4423569	3R_4423569_SNP [dm3] 3R_8597847_SNP [dm6]	T	A	3.132e^-4	0.955	INTRON 5-HT2B
2L	713145	2L_713145_SNP [dm3] 2L_713145_SNP [dm6]	T	C	3.144e^-4	0.955	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	3.152e^-4	0.955	INTRON Mp
3R	17762960	3R_17762960_SNP [dm3] 3R_21937238_SNP [dm6]	A	C	3.157e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6148861	2L_6148861_SNP [dm3] 2L_6148861_SNP [dm6]	T	C	3.159e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9278667	3L_9278667_SNP [dm3] 3L_9285567_SNP [dm6]	A	G	3.163e^-4	0.955	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	3.166e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7786950	2R_7786950_SNP [dm3] 2R_11899445_SNP [dm6]	G	T	3.170e^-4	0.955	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
4	359830	4_359830_SNP [dm3] 4_339204_SNP [dm6]	T	C	3.187e^-4	0.955	INTRON PMCA	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	10091621	2R_10091621_SNP [dm3] 2R_14204116_SNP [dm6]	G	T	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091623	2R_10091623_SNP [dm3] 2R_14204118_SNP [dm6]	A	T	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091654	2R_10091654_SNP [dm3] 2R_14204149_SNP [dm6]	C	A	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091656	2R_10091656_SNP [dm3] 2R_14204151_SNP [dm6]	G	A	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091657	2R_10091657_SNP [dm3] 2R_14204152_SNP [dm6]	C	G	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	10091665	2R_10091665_MNP [dm3] 2R_14204160_MNP [dm6]	TCAA	ATTT	3.192e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	5933544	2R_5933544_SNP [dm3] 2R_10046039_SNP [dm6]	T	C	3.194e^-4	0.955	DOWNSTREAM CR44295 INTRON oys
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	3.195e^-4	0.955	INTRON dpr3
2R	7751414	2R_7751414_DEL [dm3] 2R_11863909_DEL [dm6]	TTTAGCTTAAAAACCCCCAA...	A	3.197e^-4	0.955	UPSTREAM CG42531 & 1 other INTERGENIC
3R	8842871	3R_8842871_SNP [dm3] 3R_13017149_SNP [dm6]	C	T	3.203e^-4	0.955	UPSTREAM CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	8830731	3R_8830731_SNP [dm3] 3R_13005009_SNP [dm6]	C	T	3.207e^-4	0.955	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1490812	2R_1490812_SNP [dm3] 2R_5603307_SNP [dm6]	C	A	3.211e^-4	0.955	DOWNSTREAM Fis1 INTERGENIC
2R	9442529	2R_9442529_SNP [dm3] 2R_13555024_SNP [dm6]	C	T	3.228e^-4	0.955	UPSTREAM link INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	3.233e^-4	0.955	INTERGENIC
4	495389	4_495389_SNP [dm3] 4_474763_SNP [dm6]	A	G	3.243e^-4	0.955	SYNONYMOUS_CODING Asator UTR_3_PRIME Asator
2R	12592988	2R_12592988_SNP [dm3] 2R_16705483_SNP [dm6]	T	A	3.246e^-4	0.955	INTRON CG30463	TF binding site mE1_TFBS_chinmo
2R	10091639	2R_10091639_SNP [dm3] 2R_14204134_SNP [dm6]	T	C	3.256e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	17142542	2L_17142542_SNP [dm3] 2L_17142542_SNP [dm6]	C	T	3.260e^-4	0.955	INTRON beat-IIIa & 1 other
2R	1496810	2R_1496810_SNP [dm3] 2R_5609305_SNP [dm6]	A	T	3.263e^-4	0.955	SYNONYMOUS_CODING CG17508
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	3.275e^-4	0.955	UPSTREAM Cpr62Bc INTERGENIC
3R	22553902	3R_22553902_INS [dm3] 3R_26728180_INS [dm6]	G	GAAGGGCGGCCAG...	3.278e^-4	0.955	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
2R	20092704	2R_20092704_SNP [dm3] 2R_24205181_SNP [dm6]	G	T	3.281e^-4	0.955	UTR_3_PRIME CG11406 INTRON CG11406
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	3.281e^-4	0.955	INTRON Khc-73
X	2346939	X_2346939_SNP [dm3] X_2452906_SNP [dm6]	C	T	3.289e^-4	0.955	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4315511	X_4315511_SNP [dm3] X_4421478_SNP [dm6]	C	T	3.291e^-4	0.955	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	3.291e^-4	0.955	UPSTREAM para INTERGENIC
2R	7525468	2R_7525468_SNP [dm3] 2R_11637963_SNP [dm6]	G	T	3.298e^-4	0.955	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	2675276	2L_2675276_SNP [dm3] 2L_2675276_SNP [dm6]	A	G	3.300e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13231183	2R_13231183_SNP [dm3] 2R_17343678_SNP [dm6]	T	A	3.310e^-4	0.955	INTRON mbl
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	3.312e^-4	0.955	INTRON shep
3R	26013975	3R_26013975_SNP [dm3] 3R_30188253_SNP [dm6]	G	C	3.315e^-4	0.955	INTRON CG9747
2R	17513844	2R_17513844_SNP [dm3] 2R_21626339_SNP [dm6]	T	C	3.316e^-4	0.955	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
3R	12993292	3R_12993292_SNP [dm3] 3R_17167570_SNP [dm6]	T	A	3.328e^-4	0.955	INTRON Mur89F
X	14401074	X_14401074_SNP [dm3] X_14507041_SNP [dm6]	G	T	3.328e^-4	0.955	INTERGENIC
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	3.331e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	24936038	3R_24936038_SNP [dm3] 3R_29110316_SNP [dm6]	G	A	3.334e^-4	0.955	SYNONYMOUS_CODING alpha-Man-Ib
X	16721435	X_16721435_SNP [dm3] X_16827402_SNP [dm6]	G	A	3.335e^-4	0.955	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
X	16721444	X_16721444_SNP [dm3] X_16827411_SNP [dm6]	G	T	3.335e^-4	0.955	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	3.339e^-4	0.955	SYNONYMOUS_CODING Sytalpha
3L	16226768	3L_16226768_SNP [dm3] 3L_16233668_SNP [dm6]	T	G	3.340e^-4	0.955	NON_SYNONYMOUS_CODING Hsc20 UPSTREAM l_3_72Dp DOWNSTREAM MED10	TF binding site mE1_TFBS_inv
2R	1380767	2R_1380767_SNP [dm3] 2R_5493262_SNP [dm6]	T	A	3.346e^-4	0.955	INTRON CG30440
2R	11479213	2R_11479213_DEL [dm3] 2R_15591708_DEL [dm6]	CAAT	A	3.347e^-4	0.955	INTERGENIC
2R	11409464	2R_11409464_SNP [dm3] 2R_15521959_SNP [dm6]	G	C	3.349e^-4	0.955	INTRON Khc-73
X	5444736	X_5444736_SNP [dm3] X_5550703_SNP [dm6]	A	G	3.353e^-4	0.955	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16758456	X_16758456_SNP [dm3] X_16864423_SNP [dm6]	T	C	3.353e^-4	0.955	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	3.364e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15801238	3R_15801238_SNP [dm3] 3R_19975516_SNP [dm6]	T	C	3.367e^-4	0.955	INTRON Hs6st & 1 other
3R	15801243	3R_15801243_SNP [dm3] 3R_19975521_SNP [dm6]	T	C	3.367e^-4	0.955	INTRON Hs6st & 1 other
2R	15401004	2R_15401004_SNP [dm3] 2R_19513499_SNP [dm6]	T	C	3.373e^-4	0.955	NON_SYNONYMOUS_CODING Ir56d
X	22043604	X_22043604_SNP [dm3] X_22641768_SNP [dm6]	A	T	3.385e^-4	0.955	INTERGENIC
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	3.392e^-4	0.955	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22517885	3R_22517885_DEL [dm3] 3R_26692163_DEL [dm6]	AGCAGGGCAAGGAAA...	A	3.394e^-4	0.955	DOWNSTREAM TwdlQ INTERGENIC
2L	7753916	2L_7753916_SNP [dm3] 2L_7753916_SNP [dm6]	A	G	3.396e^-4	0.955	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	3.396e^-4	0.955	INTERGENIC
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	3.406e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	19403808	2R_19403808_SNP [dm3] 2R_23516285_SNP [dm6]	T	C	3.413e^-4	0.955	INTERGENIC
3R	20884811	3R_20884811_SNP [dm3] 3R_25059089_SNP [dm6]	T	C	3.413e^-4	0.955	UTR_5_PRIME Unc-13-4B INTRON Unc-13-4B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15914361	2R_15914361_SNP [dm3] 2R_20026856_SNP [dm6]	C	T	3.415e^-4	0.955	INTERGENIC
4	439136	4_439136_SNP [dm3] 4_418510_SNP [dm6]	C	T	3.421e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19908963	2L_19908963_SNP [dm3] 2L_19908963_SNP [dm6]	C	T	3.424e^-4	0.955	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
X	12939928	X_12939928_SNP [dm3] X_13045895_SNP [dm6]	T	C	3.437e^-4	0.955	INTRON rad
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	3.438e^-4	0.955	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	3.439e^-4	0.955	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	8843013	3R_8843013_SNP [dm3] 3R_13017291_SNP [dm6]	G	A	3.440e^-4	0.955	UTR_5_PRIME CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25922583	3R_25922583_SNP [dm3] 3R_30096861_SNP [dm6]	A	G	3.440e^-4	0.955	INTRON sima	TF binding site mE1_TFBS_cnc
3R	25922589	3R_25922589_SNP [dm3] 3R_30096867_SNP [dm6]	T	G	3.440e^-4	0.955	INTRON sima	TF binding site mE1_TFBS_cnc
2R	7813071	2R_7813071_SNP [dm3] 2R_11925566_SNP [dm6]	G	T	3.444e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	9560410	2R_9560410_DEL [dm3] 2R_13672905_DEL [dm6]	ACGCAAA	TG	3.449e^-4	0.955	UPSTREAM CR45031 INTRON fas
2L	9011458	2L_9011458_SNP [dm3] 2L_9011458_SNP [dm6]	G	C	3.452e^-4	0.955	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2R	7739921	2R_7739921_INS [dm3] 2R_11852416_INS [dm6]	T	TT	3.455e^-4	0.955	UPSTREAM Mtor DOWNSTREAM Sln INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2L	18293869	2L_18293869_SNP [dm3] 2L_18293869_SNP [dm6]	G	A	3.469e^-4	0.955	UPSTREAM CG5790 EXON CR43358
2L	3172785	2L_3172785_SNP [dm3] 2L_3172785_SNP [dm6]	A	G	3.473e^-4	0.955	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	18063302	3R_18063302_SNP [dm3] 3R_22237580_SNP [dm6]	C	G	3.474e^-4	0.955	INTRON SKIP
2R	2324944	2R_2324944_DEL [dm3] 2R_6437439_DEL [dm6]	GAC	G	3.477e^-4	0.955	INTERGENIC
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	3.482e^-4	0.955	DOWNSTREAM CG3982 INTRON CG3967
2R	8553617	2R_8553617_SNP [dm3] 2R_12666112_SNP [dm6]	C	T	3.486e^-4	0.955	UPSTREAM nemy INTRON nemy	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21186166	3R_21186166_SNP [dm3] 3R_25360444_SNP [dm6]	G	A	3.501e^-4	0.955	DOWNSTREAM CG11913 INTRON Fur1	TF binding site mE1_TFBS_inv
2L	18590296	2L_18590296_SNP [dm3] 2L_18590296_SNP [dm6]	A	T	3.504e^-4	0.955	UPSTREAM CG15160 INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25061203	3R_25061203_SNP [dm3] 3R_29235481_SNP [dm6]	A	C	3.514e^-4	0.955	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_sens
2L	8658503	2L_8658503_SNP [dm3] 2L_8658503_SNP [dm6]	A	T	3.526e^-4	0.955	INTRON Sema-1a
2L	9149896	2L_9149896_SNP [dm3] 2L_9149896_SNP [dm6]	C	T	3.528e^-4	0.955	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18126031	2L_18126031_SNP [dm3] 2L_18126031_SNP [dm6]	A	C	3.538e^-4	0.955	UPSTREAM CG31785 INTRON CG5758
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	3.538e^-4	0.955	INTRON spir & 1 other
2L	712527	2L_712527_SNP [dm3] 2L_712527_SNP [dm6]	G	C	3.539e^-4	0.955	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	3.540e^-4	0.955	UTR_3_PRIME CG10562
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	3.549e^-4	0.955	INTRON CG34377
X	13140718	X_13140718_SNP [dm3] X_13246685_SNP [dm6]	T	C	3.549e^-4	0.955	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	7801033	2R_7801033_SNP [dm3] 2R_11913528_SNP [dm6]	G	A	3.555e^-4	0.955	UPSTREAM CG13183 INTERGENIC
2R	12952688	2R_12952688_SNP [dm3] 2R_17065183_SNP [dm6]	G	A	3.558e^-4	0.955	NON_SYNONYMOUS_CODING CG6967 DOWNSTREAM CG30460	TF binding site mE1_TFBS_sens
2R	11594100	2R_11594100_SNP [dm3] 2R_15706595_SNP [dm6]	G	A	3.558e^-4	0.955	INTERGENIC
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	3.562e^-4	0.955	INTRON fz2	TF binding site mE1_TFBS_Trl
2L	16230365	2L_16230365_SNP [dm3] 2L_16230365_SNP [dm6]	A	T	3.565e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	9803201	X_9803201_SNP [dm3] X_9909168_SNP [dm6]	A	T	3.571e^-4	0.955	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	3.572e^-4	0.955	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3L	19644765	3L_19644765_SNP [dm3] 3L_19651665_SNP [dm6]	G	A	3.583e^-4	0.955	NON_SYNONYMOUS_CODING tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18063190	3R_18063190_SNP [dm3] 3R_22237468_SNP [dm6]	C	T	3.584e^-4	0.955	INTRON SKIP
X	14065969	X_14065969_SNP [dm3] X_14171936_SNP [dm6]	G	A	3.585e^-4	0.955	NON_SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
X	20563774	X_20563774_DEL [dm3] X_20692747_DEL [dm6]	TTCGATCC	T	3.585e^-4	0.955	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	17166930	X_17166930_SNP [dm3] X_17272897_SNP [dm6]	G	A	3.587e^-4	0.955	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad
2R	17503358	2R_17503358_SNP [dm3] 2R_21615853_SNP [dm6]	T	C	3.589e^-4	0.955	SYNONYMOUS_CODING CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11326196	X_11326196_SNP [dm3] X_11432163_SNP [dm6]	T	C	3.590e^-4	0.955	UTR_3_PRIME Evi5
X	16787324	X_16787324_SNP [dm3] X_16893291_SNP [dm6]	T	A	3.593e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	12291278	2R_12291278_SNP [dm3] 2R_16403773_SNP [dm6]	A	T	3.594e^-4	0.955	INTRON Sema-2b
X	16721471	X_16721471_SNP [dm3] X_16827438_SNP [dm6]	A	T	3.596e^-4	0.955	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3R	22524189	3R_22524189_SNP [dm3] 3R_26698467_SNP [dm6]	A	T	3.596e^-4	0.955	UTR_3_PRIME amon
2R	7698759	2R_7698759_SNP [dm3] 2R_11811254_SNP [dm6]	A	G	3.602e^-4	0.955	NON_SYNONYMOUS_CODING ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18293779	2L_18293779_DEL [dm3] 2L_18293779_DEL [dm6]	CTAC	C	3.611e^-4	0.955	DOWNSTREAM Sfp36F EXON CR43358
4	322609	4_322609_SNP [dm3] 4_301983_SNP [dm6]	G	C	3.612e^-4	0.955	INTRON Syt7
2R	10091697	2R_10091697_SNP [dm3] 2R_14204192_SNP [dm6]	T	A	3.619e^-4	0.955	INTRON Sox15	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	7403419	2R_7403419_SNP [dm3] 2R_11515914_SNP [dm6]	T	A	3.619e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	13219254	2R_13219254_DEL [dm3] 2R_17331749_DEL [dm6]	ATTTGTTTTCTTACAGGG...	A	3.620e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219277	2R_13219277_DEL [dm3] 2R_17331772_DEL [dm6]	TCCTTTA	T	3.620e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219288	2R_13219288_SNP [dm3] 2R_17331783_SNP [dm6]	G	T	3.620e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2R	13219290	2R_13219290_SNP [dm3] 2R_17331785_SNP [dm6]	G	A	3.620e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
2L	4384423	2L_4384423_SNP [dm3] 2L_4384423_SNP [dm6]	T	C	3.624e^-4	0.955	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
3L	10590789	3L_10590789_SNP [dm3] 3L_10597689_SNP [dm6]	G	A	3.626e^-4	0.955	INTERGENIC
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	3.634e^-4	0.955	INTRON spri
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	3.666e^-4	0.955	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	3.666e^-4	0.955	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	3.667e^-4	0.955	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	3.667e^-4	0.955	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8346704	2L_8346704_SNP [dm3] 2L_8346704_SNP [dm6]	C	A	3.672e^-4	0.955	UTR_5_PRIME CG7778	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8553581	2R_8553581_DEL [dm3] 2R_12666076_DEL [dm6]	TTT	T	3.678e^-4	0.955	UPSTREAM nemy INTRON nemy	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12257057	2L_12257057_SNP [dm3] 2L_12257057_SNP [dm6]	C	A	3.686e^-4	0.955	INTRON aret
2R	7771539	2R_7771539_SNP [dm3] 2R_11884034_SNP [dm6]	C	T	3.689e^-4	0.955	SYNONYMOUS_CODING CG13185
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	3.696e^-4	0.955	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	18470599	3R_18470599_SNP [dm3] 3R_22644877_SNP [dm6]	T	A	3.700e^-4	0.955	INTRON CG45058
3R	3492384	3R_3492384_SNP [dm3] 3R_7666662_SNP [dm6]	T	C	3.701e^-4	0.955	INTRON Nlg1
2L	8658584	2L_8658584_SNP [dm3] 2L_8658584_SNP [dm6]	G	A	3.702e^-4	0.955	INTRON Sema-1a
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	3.714e^-4	0.955	UPSTREAM bbg INTRON bbg
2L	7335488	2L_7335488_SNP [dm3] 2L_7335488_SNP [dm6]	A	G	3.714e^-4	0.955	INTRON Wnt6
2L	10391180	2L_10391180_SNP [dm3] 2L_10391180_SNP [dm6]	C	T	3.714e^-4	0.955	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8501583	2R_8501583_INS [dm3] 2R_12614078_INS [dm6]	A	AG	3.721e^-4	0.955	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq
2L	15370909	2L_15370909_SNP [dm3] 2L_15370909_SNP [dm6]	C	A	3.737e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11496739	2L_11496739_SNP [dm3] 2L_11496739_SNP [dm6]	C	A	3.749e^-4	0.955	DOWNSTREAM CG6488 INTERGENIC
2L	18132912	2L_18132912_SNP [dm3] 2L_18132912_SNP [dm6]	C	G	3.753e^-4	0.955	INTRON kel	TF binding site mE1_TFBS_cad
2R	19526466	2R_19526466_INS [dm3] 2R_23638943_INS [dm6]	T	TCTTT	3.756e^-4	0.955	INTRON retn EXON CR45153	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	20225393	2R_20225393_SNP [dm3] 2R_24337870_SNP [dm6]	A	T	3.760e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19923394	2L_19923394_SNP [dm3] 2L_19923394_SNP [dm6]	G	A	3.761e^-4	0.955	INTRON sick EXON CR43827
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	3.768e^-4	0.955	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	3.772e^-4	0.955	DOWNSTREAM CG14017 INTRON GluRIIA
2L	14362757	2L_14362757_SNP [dm3] 2L_14362757_SNP [dm6]	C	G	3.784e^-4	0.955	SYNONYMOUS_CODING spel1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	10071129	2R_10071129_SNP [dm3] 2R_14183624_SNP [dm6]	T	C	3.787e^-4	0.955	DOWNSTREAM cg INTERGENIC
3R	10884320	3R_10884320_SNP [dm3] 3R_15058598_SNP [dm6]	A	G	3.791e^-4	0.955	INTRON dpr9
2L	18302498	2L_18302498_SNP [dm3] 2L_18302498_SNP [dm6]	G	A	3.792e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11479199	2R_11479199_MNP [dm3] 2R_15591694_MNP [dm6]	TGA	ATT	3.792e^-4	0.955	INTERGENIC
2R	1489765	2R_1489765_SNP [dm3] 2R_5602260_SNP [dm6]	A	G	3.795e^-4	0.955	INTERGENIC
3R	25924526	3R_25924526_SNP [dm3] 3R_30098804_SNP [dm6]	C	A	3.797e^-4	0.955	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	3.798e^-4	0.955	INTERGENIC
3R	19230108	3R_19230108_SNP [dm3] 3R_23404386_SNP [dm6]	T	G	3.798e^-4	0.955	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
2L	6234638	2L_6234638_SNP [dm3] 2L_6234638_SNP [dm6]	C	A	3.799e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	14331781	2R_14331781_SNP [dm3] 2R_18444276_SNP [dm6]	G	T	3.801e^-4	0.955	INTRON slim
2L	3784831	2L_3784831_INS [dm3] 2L_3784831_INS [dm6]	GT	TCC	3.803e^-4	0.955	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3R	19235794	3R_19235794_SNP [dm3] 3R_23410072_SNP [dm6]	G	T	3.803e^-4	0.955	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	3.827e^-4	0.955	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19502752	2R_19502752_SNP [dm3] 2R_23615229_SNP [dm6]	T	A	3.831e^-4	0.955	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	4682909	3L_4682909_SNP [dm3] 3L_4682909_SNP [dm6]	C	A	3.835e^-4	0.955	INTRON axo
X	16758119	X_16758119_SNP [dm3] X_16864086_SNP [dm6]	A	G	3.842e^-4	0.955	INTRON CG13003
3R	5282187	3R_5282187_SNP [dm3] 3R_9456465_SNP [dm6]	T	A	3.845e^-4	0.955	UTR_5_PRIME GstZ1 DOWNSTREAM ps & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5776849	2L_5776849_SNP [dm3] 2L_5776849_SNP [dm6]	A	G	3.847e^-4	0.955	INTRON CG9171
2L	18293786	2L_18293786_SNP [dm3] 2L_18293786_SNP [dm6]	C	T	3.854e^-4	0.955	DOWNSTREAM Sfp36F EXON CR43358
2L	18293815	2L_18293815_SNP [dm3] 2L_18293815_SNP [dm6]	A	G	3.854e^-4	0.955	DOWNSTREAM Sfp36F EXON CR43358
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	3.859e^-4	0.955	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3L	14201253	3L_14201253_SNP [dm3] 3L_14208153_SNP [dm6]	A	T	3.865e^-4	0.955	INTRON nuf
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	3.865e^-4	0.955	INTRON CG34377
X	15637964	X_15637964_SNP [dm3] X_15743931_SNP [dm6]	A	G	3.866e^-4	0.955	SYNONYMOUS_CODING CG8944	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19273595	3L_19273595_SNP [dm3] 3L_19280495_SNP [dm6]	C	T	3.866e^-4	0.955	SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2L	1212154	2L_1212154_SNP [dm3] 2L_1212154_SNP [dm6]	A	C	3.872e^-4	0.955	INTERGENIC
2L	6237862	2L_6237862_SNP [dm3] 2L_6237862_SNP [dm6]	G	A	3.886e^-4	0.955	INTERGENIC
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	3.887e^-4	0.955	SYNONYMOUS_CODING Or35a
3R	23478199	3R_23478199_SNP [dm3] 3R_27652477_SNP [dm6]	C	A	3.891e^-4	0.955	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	9177820	2R_9177820_SNP [dm3] 2R_13290315_SNP [dm6]	A	T	3.897e^-4	0.955	INTRON Dh31-R
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	3.899e^-4	0.955	INTRON Wnt6
3R	21272578	3R_21272578_SNP [dm3] 3R_25446856_SNP [dm6]	A	G	3.905e^-4	0.955	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	7398722	2R_7398722_SNP [dm3] 2R_11511217_SNP [dm6]	G	A	3.906e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4684942	2L_4684942_SNP [dm3] 2L_4684942_SNP [dm6]	A	T	3.911e^-4	0.955	SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	3.912e^-4	0.955	INTRON CG34114
2R	17424293	2R_17424293_SNP [dm3] 2R_21536788_SNP [dm6]	G	A	3.912e^-4	0.955	START_GAINED CG30286 UTR_5_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13219275	2R_13219275_SNP [dm3] 2R_17331770_SNP [dm6]	T	A	3.915e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3L	9278606	3L_9278606_SNP [dm3] 3L_9285506_SNP [dm6]	C	A	3.915e^-4	0.955	NON_SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3R	25738476	3R_25738476_SNP [dm3] 3R_29912754_SNP [dm6]	A	G	3.919e^-4	0.955	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
X	16763291	X_16763291_SNP [dm3] X_16869258_SNP [dm6]	G	A	3.958e^-4	0.955	INTRON CG13003
3R	26009884	3R_26009884_SNP [dm3] 3R_30184162_SNP [dm6]	G	A	3.959e^-4	0.955	EXON CR44262
3L	19274139	3L_19274139_SNP [dm3] 3L_19281039_SNP [dm6]	T	C	3.961e^-4	0.955	UPSTREAM CG14089 DOWNSTREAM Gbs-76A INTERGENIC
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	3.970e^-4	0.955	UPSTREAM para INTERGENIC
X	12390238	X_12390238_SNP [dm3] X_12496205_SNP [dm6]	T	C	3.978e^-4	0.955	SYNONYMOUS_CODING Mks1 UPSTREAM CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	3.990e^-4	0.955	INTRON CG31637
X	16972194	X_16972194_DEL [dm3] X_17078161_DEL [dm6]	TTTT	T	3.997e^-4	0.955	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	4.003e^-4	0.955	INTRON Ptp61F
2R	12049488	2R_12049488_SNP [dm3] 2R_16161983_SNP [dm6]	A	C	4.007e^-4	0.955	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7012001	2L_7012001_SNP [dm3] 2L_7012001_SNP [dm6]	T	A	4.008e^-4	0.955	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12088839	2R_12088839_SNP [dm3] 2R_16201334_SNP [dm6]	G	T	4.009e^-4	0.955	NON_SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	4.016e^-4	0.955	UPSTREAM para INTERGENIC
X	2346945	X_2346945_SNP [dm3] X_2452912_SNP [dm6]	T	G	4.023e^-4	0.955	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	17939905	X_17939905_SNP [dm3] X_18045872_SNP [dm6]	A	G	4.028e^-4	0.955	SYNONYMOUS_CODING CG15373 INTRON Sh
2R	1487909	2R_1487909_SNP [dm3] 2R_5600404_SNP [dm6]	G	A	4.029e^-4	0.955	INTERGENIC
2L	14250283	2L_14250283_SNP [dm3] 2L_14250283_SNP [dm6]	G	A	4.029e^-4	0.955	INTERGENIC
3R	26014969	3R_26014969_SNP [dm3] 3R_30189247_SNP [dm6]	A	T	4.036e^-4	0.955	INTRON CG9747
2L	19411895	2L_19411895_SNP [dm3] 2L_19411895_SNP [dm6]	C	A	4.036e^-4	0.955	UPSTREAM Pax INTRON Pax
3R	19243318	3R_19243318_SNP [dm3] 3R_23417596_SNP [dm6]	T	C	4.039e^-4	0.955	INTRON CG4374	TF binding site mE1_TFBS_chinmo
2R	7421314	2R_7421314_SNP [dm3] 2R_11533809_SNP [dm6]	T	G	4.045e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16758029	X_16758029_SNP [dm3] X_16863996_SNP [dm6]	C	T	4.051e^-4	0.955	INTRON CG13003
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	4.073e^-4	0.955	INTERGENIC
X	5223597	X_5223597_SNP [dm3] X_5329564_SNP [dm6]	C	A	4.074e^-4	0.955	UPSTREAM XRCC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16721280	X_16721280_SNP [dm3] X_16827247_SNP [dm6]	T	A	4.075e^-4	0.955	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2L	8997680	2L_8997680_SNP [dm3] 2L_8997680_SNP [dm6]	G	T	4.080e^-4	0.955	UPSTREAM alien & 1 other INTRON CG18661	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3R	16006326	3R_16006326_SNP [dm3] 3R_20180604_SNP [dm6]	G	A	4.080e^-4	0.955	INTERGENIC
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	4.085e^-4	0.955	INTRON beat-Ib
2L	12944975	2L_12944975_SNP [dm3] 2L_12944975_SNP [dm6]	C	G	4.088e^-4	0.955	INTERGENIC
3R	19490716	3R_19490716_SNP [dm3] 3R_23664994_SNP [dm6]	G	A	4.088e^-4	0.955	INTRON CG31145
3R	19490790	3R_19490790_SNP [dm3] 3R_23665068_SNP [dm6]	G	A	4.088e^-4	0.955	INTRON CG31145
3R	18063306	3R_18063306_SNP [dm3] 3R_22237584_SNP [dm6]	G	A	4.096e^-4	0.955	INTRON SKIP
2R	19277488	2R_19277488_SNP [dm3] 2R_23389965_SNP [dm6]	A	T	4.103e^-4	0.955	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13219236	2R_13219236_SNP [dm3] 2R_17331731_SNP [dm6]	G	C	4.130e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
3R	6811200	3R_6811200_SNP [dm3] 3R_10985478_SNP [dm6]	G	T	4.135e^-4	0.955	INTRON CG34114
2R	8929285	2R_8929285_SNP [dm3] 2R_13041780_SNP [dm6]	C	G	4.137e^-4	0.955	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2R	7398700	2R_7398700_SNP [dm3] 2R_11511195_SNP [dm6]	G	C	4.141e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7435837	2L_7435837_SNP [dm3] 2L_7435837_SNP [dm6]	C	G	4.142e^-4	0.955	INTERGENIC
3R	21763952	3R_21763952_SNP [dm3] 3R_25938230_SNP [dm6]	T	G	4.145e^-4	0.955	INTRON CCAP-R
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	4.149e^-4	0.955	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	4.149e^-4	0.955	INTRON CG9747
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	4.156e^-4	0.955	INTRON CG32365
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	4.158e^-4	0.955	INTRON a
X	22065183	X_22065183_SNP [dm3] X_22663347_SNP [dm6]	A	G	4.166e^-4	0.955	INTRON CR44997
3R	10035925	3R_10035925_SNP [dm3] 3R_14210203_SNP [dm6]	C	T	4.168e^-4	0.955	INTRON Dop1R1
X	5086460	X_5086460_SNP [dm3] X_5192427_SNP [dm6]	G	A	4.173e^-4	0.955	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16722395	X_16722395_SNP [dm3] X_16828362_SNP [dm6]	C	T	4.173e^-4	0.955	UPSTREAM CG13004 INTRON CG13004
3L	13381488	3L_13381488_SNP [dm3] 3L_13388388_SNP [dm6]	T	A	4.178e^-4	0.955	UTR_3_PRIME Poc1 UPSTREAM CG10171	TF binding site mE1_TFBS_cad
3L	3995214	3L_3995214_SNP [dm3] 3L_3995214_SNP [dm6]	T	G	4.179e^-4	0.955	INTERGENIC
2L	13021469	2L_13021469_SNP [dm3] 2L_13021469_SNP [dm6]	A	G	4.185e^-4	0.955	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	2916614	3L_2916614_SNP [dm3] 3L_2916614_SNP [dm6]	T	A	4.188e^-4	0.955	UTR_5_PRIME CG9970 INTRON Shab
2L	506971	2L_506971_SNP [dm3] 2L_506971_SNP [dm6]	C	T	4.189e^-4	0.955	INTRON ush
2R	13219285	2R_13219285_SNP [dm3] 2R_17331780_SNP [dm6]	C	G	4.190e^-4	0.955	INTRON mbl	TF binding site BDTNP1_TFBS_prd
4	469871	4_469871_SNP [dm3] 4_449245_SNP [dm6]	C	T	4.194e^-4	0.955	INTRON CaMKI	transposable element FlyBase
2R	10310694	2R_10310694_SNP [dm3] 2R_14423189_SNP [dm6]	T	C	4.194e^-4	0.955	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13018110	2L_13018110_SNP [dm3] 2L_13018110_SNP [dm6]	T	A	4.199e^-4	0.955	START_GAINED CG9934 UTR_5_PRIME CG9934
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	4.206e^-4	0.955	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	4.215e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	13240661	2L_13240661_SNP [dm3] 2L_13240661_SNP [dm6]	G	T	4.217e^-4	0.955	NON_SYNONYMOUS_CODING CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15876381	3R_15876381_SNP [dm3] 3R_20050659_SNP [dm6]	G	C	4.223e^-4	0.955	INTRON CG17193
3L	11698343	3L_11698343_SNP [dm3] 3L_11705243_SNP [dm6]	C	A	4.227e^-4	0.955	INTRON CG11658
2L	16311859	2L_16311859_DEL [dm3] 2L_16311859_DEL [dm6]	TT	T	4.232e^-4	0.955	INTRON fzy	TF binding site mE1_TFBS_sens
3L	12997711	3L_12997711_DEL [dm3] 3L_13004611_DEL [dm6]	GCCGGGGCTTCGCTTGCATT...	G	4.244e^-4	0.955	INTERGENIC
2R	16994534	2R_16994534_SNP [dm3] 2R_21107029_SNP [dm6]	G	C	4.247e^-4	0.955	INTRON ktub
2R	7410324	2R_7410324_INS [dm3] 2R_11522819_INS [dm6]	T	TAATT	4.248e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	12376443	2L_12376443_SNP [dm3] 2L_12376443_SNP [dm6]	G	A	4.259e^-4	0.955	INTRON bru-2
2L	19967553	2L_19967553_SNP [dm3] 2L_19967553_SNP [dm6]	A	G	4.262e^-4	0.955	INTRON Hf	TF binding site mE1_TFBS_cad
3L	13915774	3L_13915774_SNP [dm3] 3L_13922674_SNP [dm6]	T	C	4.267e^-4	0.955	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	13253839	2R_13253839_SNP [dm3] 2R_17366334_SNP [dm6]	T	A	4.269e^-4	0.955	DOWNSTREAM mbl INTRON mbl
2L	17858853	2L_17858853_SNP [dm3] 2L_17858853_SNP [dm6]	A	G	4.270e^-4	0.955	INTRON CadN2
2R	7801504	2R_7801504_SNP [dm3] 2R_11913999_SNP [dm6]	T	C	4.270e^-4	0.955	INTERGENIC
2R	7796195	2R_7796195_SNP [dm3] 2R_11908690_SNP [dm6]	T	G	4.272e^-4	0.955	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7400633	2R_7400633_SNP [dm3] 2R_11513128_SNP [dm6]	G	A	4.278e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7421319	2R_7421319_SNP [dm3] 2R_11533814_SNP [dm6]	C	A	4.280e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7421320	2R_7421320_SNP [dm3] 2R_11533815_SNP [dm6]	A	G	4.280e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7421327	2R_7421327_SNP [dm3] 2R_11533822_SNP [dm6]	G	C	4.280e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18302517	2L_18302517_SNP [dm3] 2L_18302517_SNP [dm6]	G	A	4.282e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13536503	2R_13536503_SNP [dm3] 2R_17648998_SNP [dm6]	G	T	4.284e^-4	0.955	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1488068	2R_1488068_SNP [dm3] 2R_5600563_SNP [dm6]	C	T	4.295e^-4	0.955	INTERGENIC	transposable element FlyBase
2R	1494344	2R_1494344_SNP [dm3] 2R_5606839_SNP [dm6]	C	G	4.295e^-4	0.955	INTERGENIC
2R	1499357	2R_1499357_DEL [dm3] 2R_5611852_DEL [dm6]	CATGCCGGGCGTCCTATTCT...	C	4.295e^-4	0.955	DOWNSTREAM CG17508 INTERGENIC
3L	21215295	3L_21215295_SNP [dm3] 3L_21222195_SNP [dm6]	C	T	4.301e^-4	0.955	INTRON CG43219
3L	8450604	3L_8450604_INS [dm3] 3L_8457504_INS [dm6]	T	TGCCAGGCCAGGCAT...	4.310e^-4	0.955	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	25739953	3R_25739953_SNP [dm3] 3R_29914231_SNP [dm6]	A	G	4.314e^-4	0.955	SYNONYMOUS_CODING Capa DOWNSTREAM trp
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	4.319e^-4	0.955	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	6874535	3R_6874535_SNP [dm3] 3R_11048813_SNP [dm6]	T	G	4.327e^-4	0.955	UTR_3_PRIME CG34114
2R	8593516	2R_8593516_SNP [dm3] 2R_12706011_SNP [dm6]	G	A	4.328e^-4	0.955	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	4.349e^-4	0.955	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	4.353e^-4	0.955	INTRON hdc
2L	712457	2L_712457_SNP [dm3] 2L_712457_SNP [dm6]	G	A	4.355e^-4	0.955	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8551441	2R_8551441_SNP [dm3] 2R_12663936_SNP [dm6]	G	T	4.357e^-4	0.955	INTRON nemy
2R	1489406	2R_1489406_SNP [dm3] 2R_5601901_SNP [dm6]	T	G	4.362e^-4	0.955	INTERGENIC
3R	12689075	3R_12689075_SNP [dm3] 3R_16863353_SNP [dm6]	A	G	4.367e^-4	0.955	INTRON iab-8
X	6528261	X_6528261_SNP [dm3] X_6634228_SNP [dm6]	T	C	4.376e^-4	0.955	SYNONYMOUS_CODING CG14443 INTRON pigs
3L	7391746	3L_7391746_SNP [dm3] 3L_7398646_SNP [dm6]	T	A	4.383e^-4	0.955	NON_SYNONYMOUS_CODING CG8562 DOWNSTREAM CG32379	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	4.389e^-4	0.955	INTRON psq
2L	5569697	2L_5569697_SNP [dm3] 2L_5569697_SNP [dm6]	G	A	4.391e^-4	0.955	INTERGENIC
2L	6954343	2L_6954343_SNP [dm3] 2L_6954343_SNP [dm6]	C	T	4.403e^-4	0.955	DOWNSTREAM CG13775 INTRON SA
2L	20052445	2L_20052445_SNP [dm3] 2L_20052445_SNP [dm6]	C	T	4.420e^-4	0.955	INTRON sNPF
2L	12227599	2L_12227599_SNP [dm3] 2L_12227599_SNP [dm6]	A	G	4.428e^-4	0.955	INTRON aret
2R	7421309	2R_7421309_SNP [dm3] 2R_11533804_SNP [dm6]	A	G	4.431e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3893271	2L_3893271_SNP [dm3] 2L_3893271_SNP [dm6]	C	A	4.438e^-4	0.955	NON_SYNONYMOUS_CODING capu
3R	26009192	3R_26009192_SNP [dm3] 3R_30183470_SNP [dm6]	T	C	4.443e^-4	0.955	DOWNSTREAM CR44262 INTERGENIC
X	16723233	X_16723233_SNP [dm3] X_16829200_SNP [dm6]	A	G	4.449e^-4	0.955	INTRON CG13004
2R	7125776	2R_7125776_SNP [dm3] 2R_11238271_SNP [dm6]	A	T	4.450e^-4	0.955	SYNONYMOUS_CODING CG13216 UPSTREAM CG34224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19241264	2R_19241264_SNP [dm3] 2R_23353741_SNP [dm6]	C	T	4.454e^-4	0.955	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7638329	2R_7638329_SNP [dm3] 2R_11750824_SNP [dm6]	G	C	4.461e^-4	0.955	INTERGENIC
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	4.466e^-4	0.955	INTRON dpr3
3R	22516932	3R_22516932_SNP [dm3] 3R_26691210_SNP [dm6]	G	A	4.471e^-4	0.955	INTERGENIC
X	16091206	X_16091206_SNP [dm3] X_16197173_SNP [dm6]	G	T	4.478e^-4	0.955	INTERGENIC
X	21456191	X_21456191_SNP [dm3] X_21585164_SNP [dm6]	A	T	4.489e^-4	0.955	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3L	10342466	3L_10342466_SNP [dm3] 3L_10349366_SNP [dm6]	A	G	4.519e^-4	0.955	INTRON CR44327
2R	7814430	2R_7814430_SNP [dm3] 2R_11926925_SNP [dm6]	T	C	4.523e^-4	0.955	INTERGENIC
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	4.524e^-4	0.955	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	4.525e^-4	0.955	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	4.530e^-4	0.955	UTR_3_PRIME CG17839
3L	15243523	3L_15243523_SNP [dm3] 3L_15250423_SNP [dm6]	A	G	4.536e^-4	0.955	INTERGENIC
X	10200714	X_10200714_SNP [dm3] X_10306681_SNP [dm6]	T	G	4.540e^-4	0.955	INTRON alpha-Man-I
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	4.542e^-4	0.955	UTR_3_PRIME fas
3R	25548762	3R_25548762_SNP [dm3] 3R_29723040_SNP [dm6]	A	C	4.542e^-4	0.955	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	4.542e^-4	0.955	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	4.546e^-4	0.955	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	4.548e^-4	0.955	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2R	19277830	2R_19277830_SNP [dm3] 2R_23390307_SNP [dm6]	G	T	4.549e^-4	0.955	SPLICE_SITE_REGION CG3530 SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	4.553e^-4	0.955	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	17504259	2R_17504259_SNP [dm3] 2R_21616754_SNP [dm6]	T	A	4.560e^-4	0.955	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13340626	2R_13340626_SNP [dm3] 2R_17453121_SNP [dm6]	T	A	4.561e^-4	0.955	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19316364	2L_19316364_SNP [dm3] 2L_19316364_SNP [dm6]	A	C	4.562e^-4	0.955	INTERGENIC
2R	1497856	2R_1497856_SNP [dm3] 2R_5610351_SNP [dm6]	A	C	4.573e^-4	0.955	DOWNSTREAM CG17508 INTRON CG17508
2R	7751475	2R_7751475_SNP [dm3] 2R_11863970_SNP [dm6]	G	A	4.586e^-4	0.955	UPSTREAM CG42531 & 1 other INTERGENIC
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	4.588e^-4	0.955	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	16034288	3R_16034288_SNP [dm3] 3R_20208566_SNP [dm6]	G	T	4.589e^-4	0.955	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
2R	19278549	2R_19278549_SNP [dm3] 2R_23391026_SNP [dm6]	G	A	4.592e^-4	0.955	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14105773	3R_14105773_SNP [dm3] 3R_18280051_SNP [dm6]	C	T	4.597e^-4	0.955	UPSTREAM CG7142 INTRON eIF-1A
3R	1420779	3R_1420779_DEL [dm3] 3R_5595057_DEL [dm6]	TAAGT	T	4.599e^-4	0.955	UTR_3_PRIME Vha26 DOWNSTREAM kra & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	4.602e^-4	0.955	INTERGENIC
3L	18941474	3L_18941474_SNP [dm3] 3L_18948374_SNP [dm6]	G	C	4.604e^-4	0.955	INTERGENIC
2L	6854019	2L_6854019_SNP [dm3] 2L_6854019_SNP [dm6]	G	T	4.608e^-4	0.955	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18270778	2L_18270778_SNP [dm3] 2L_18270778_SNP [dm6]	A	T	4.610e^-4	0.955	INTRON CG42750
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	4.614e^-4	0.955	INTRON rgn
3L	14634654	3L_14634654_SNP [dm3] 3L_14641554_SNP [dm6]	C	T	4.620e^-4	0.955	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	4.622e^-4	0.955	INTRON kek3
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	4.626e^-4	0.955	INTRON kel
4	349518	4_349518_SNP [dm3] 4_328892_SNP [dm6]	C	T	4.631e^-4	0.955	UTR_3_PRIME CG32850 & 1 other DOWNSTREAM PMCA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15196383	2R_15196383_SNP [dm3] 2R_19308878_SNP [dm6]	G	C	4.633e^-4	0.955	INTRON EndoB
4	419891	4_419891_SNP [dm3] 4_399265_SNP [dm6]	C	T	4.645e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn
3R	22901013	3R_22901013_SNP [dm3] 3R_27075291_SNP [dm6]	T	A	4.661e^-4	0.955	UPSTREAM CG14257 INTERGENIC
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	4.669e^-4	0.955	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1488295	2R_1488295_SNP [dm3] 2R_5600790_SNP [dm6]	A	T	4.677e^-4	0.955	INTERGENIC	transposable element FlyBase
2L	1951152	2L_1951152_SNP [dm3] 2L_1951152_SNP [dm6]	G	A	4.677e^-4	0.955	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17242032	3R_17242032_SNP [dm3] 3R_21416310_SNP [dm6]	C	T	4.686e^-4	0.955	INTRON lbl
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	4.696e^-4	0.955	INTRON bbg	TF binding site mE1_TFBS_cnc
2R	18066920	2R_18066920_DEL [dm3] 2R_22179415_DEL [dm6]	TT	T	4.705e^-4	0.955	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	4.712e^-4	0.955	DOWNSTREAM CG31785 INTRON CG5758
2R	6261222	2R_6261222_SNP [dm3] 2R_10373717_SNP [dm6]	C	T	4.713e^-4	0.955	INTRON CG42732
2R	11479417	2R_11479417_SNP [dm3] 2R_15591912_SNP [dm6]	A	C	4.734e^-4	0.955	INTERGENIC
2L	2544670	2L_2544670_SNP [dm3] 2L_2544670_SNP [dm6]	G	C	4.746e^-4	0.955	INTERGENIC
X	16761852	X_16761852_SNP [dm3] X_16867819_SNP [dm6]	A	C	4.748e^-4	0.955	INTRON CG13003
3R	13875383	3R_13875383_SNP [dm3] 3R_18049661_SNP [dm6]	G	A	4.752e^-4	0.955	UPSTREAM htl INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	20877492	3L_20877492_SNP [dm3] 3L_20884392_SNP [dm6]	T	A	4.763e^-4	0.955	INTRON CG32432
2R	17785575	2R_17785575_SNP [dm3] 2R_21898070_SNP [dm6]	C	A	4.763e^-4	0.955	INTRON Fili
3L	2003024	3L_2003024_SNP [dm3] 3L_2003024_SNP [dm6]	G	A	4.767e^-4	0.955	DOWNSTREAM CG42841 INTERGENIC
3L	7841032	3L_7841032_SNP [dm3] 3L_7847932_SNP [dm6]	G	A	4.776e^-4	0.955	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15815305	3R_15815305_SNP [dm3] 3R_19989583_SNP [dm6]	A	C	4.781e^-4	0.955	INTRON Hs6st
2R	15294398	2R_15294398_SNP [dm3] 2R_19406893_SNP [dm6]	C	A	4.783e^-4	0.955	DOWNSTREAM hts INTRON hts
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	4.787e^-4	0.955	SYNONYMOUS_CODING Gfrl
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	4.787e^-4	0.955	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	4.794e^-4	0.955	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	12715832	3L_12715832_SNP [dm3] 3L_12722732_SNP [dm6]	G	A	4.796e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20787604	3R_20787604_SNP [dm3] 3R_24961882_SNP [dm6]	C	T	4.811e^-4	0.955	INTERGENIC
X	411374	X_411374_SNP [dm3] X_517341_SNP [dm6]	T	A	4.820e^-4	0.955	UTR_3_PRIME elav INTRON arg
3R	21470815	3R_21470815_SNP [dm3] 3R_25645093_SNP [dm6]	C	T	4.830e^-4	0.955	INTRON jigr1	TF binding site BDTNP1_TFBS_dl
3R	16033923	3R_16033923_SNP [dm3] 3R_20208201_SNP [dm6]	A	G	4.835e^-4	0.955	UTR_3_PRIME CG17199 INTRON Nlg4
2R	9573196	2R_9573196_SNP [dm3] 2R_13685691_SNP [dm6]	A	G	4.842e^-4	0.955	INTRON fas
2L	6861895	2L_6861895_SNP [dm3] 2L_6861895_SNP [dm6]	A	T	4.856e^-4	0.955	SYNONYMOUS_CODING Nha1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	18685457	3R_18685457_SNP [dm3] 3R_22859735_SNP [dm6]	T	C	4.860e^-4	0.955	INTERGENIC
2R	4257970	2R_4257970_SNP [dm3] 2R_8370465_SNP [dm6]	G	A	4.863e^-4	0.955	UPSTREAM CG2127 & 1 other INTRON pdm3
2L	12257019	2L_12257019_SNP [dm3] 2L_12257019_SNP [dm6]	A	G	4.864e^-4	0.955	INTRON aret
2L	4457029	2L_4457029_SNP [dm3] 2L_4457029_SNP [dm6]	A	T	4.868e^-4	0.955	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	4.872e^-4	0.955	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	1712780	2R_1712780_SNP [dm3] 2R_5825275_SNP [dm6]	A	C	4.891e^-4	0.955	INTRON dpr12
2L	9453779	2L_9453779_SNP [dm3] 2L_9453779_SNP [dm6]	C	T	4.894e^-4	0.955	INTRON numb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19907126	2L_19907126_SNP [dm3] 2L_19907126_SNP [dm6]	C	T	4.895e^-4	0.955	INTRON sick
2L	6853914	2L_6853914_SNP [dm3] 2L_6853914_SNP [dm6]	T	C	4.897e^-4	0.955	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18143454	2L_18143454_SNP [dm3] 2L_18143454_SNP [dm6]	A	G	4.899e^-4	0.955	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7400885	2R_7400885_SNP [dm3] 2R_11513380_SNP [dm6]	G	C	4.900e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	13002561	3R_13002561_SNP [dm3] 3R_17176839_SNP [dm6]	G	T	4.904e^-4	0.955	INTRON Mur89F
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	4.911e^-4	0.955	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
2L	5644137	2L_5644137_SNP [dm3] 2L_5644137_SNP [dm6]	A	C	4.942e^-4	0.955	INTRON CG31646
2L	6853913	2L_6853913_SNP [dm3] 2L_6853913_SNP [dm6]	A	T	4.958e^-4	0.955	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8713316	2L_8713316_SNP [dm3] 2L_8713316_SNP [dm6]	T	C	4.958e^-4	0.955	SYNONYMOUS_CODING raw
2L	3784836	2L_3784836_SNP [dm3] 2L_3784836_SNP [dm6]	A	T	4.961e^-4	0.955	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3L	17737149	3L_17737149_SNP [dm3] 3L_17744049_SNP [dm6]	C	G	4.962e^-4	0.955	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	25986697	3R_25986697_SNP [dm3] 3R_30160975_SNP [dm6]	A	G	4.964e^-4	0.955	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2884074	X_2884074_SNP [dm3] X_2990041_SNP [dm6]	A	T	4.971e^-4	0.955	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z
2R	10536363	2R_10536363_SNP [dm3] 2R_14648858_SNP [dm6]	C	T	4.973e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15370895	2L_15370895_SNP [dm3] 2L_15370895_SNP [dm6]	T	G	4.985e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26181654	3R_26181654_SNP [dm3] 3R_30355932_SNP [dm6]	A	C	4.985e^-4	0.955	INTRON hdc
2L	9858403	2L_9858403_SNP [dm3] 2L_9858403_SNP [dm6]	A	C	4.987e^-4	0.955	INTRON nAChRalpha6
3L	19268169	3L_19268169_SNP [dm3] 3L_19275069_SNP [dm6]	A	C	4.992e^-4	0.955	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
2R	3873466	2R_3873466_SNP [dm3] 2R_7985961_SNP [dm6]	G	A	5.005e^-4	0.955	INTRON ACC
2R	8922168	2R_8922168_SNP [dm3] 2R_13034663_SNP [dm6]	T	A	5.005e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17505640	2R_17505640_SNP [dm3] 2R_21618135_SNP [dm6]	C	G	5.020e^-4	0.955	NON_SYNONYMOUS_CODING clt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	20238975	2R_20238975_SNP [dm3] 2R_24351452_SNP [dm6]	A	G	5.021e^-4	0.955	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7886421	3L_7886421_SNP [dm3] 3L_7893321_SNP [dm6]	G	A	5.025e^-4	0.955	SYNONYMOUS_CODING CG32365
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	5.029e^-4	0.955	INTRON CG34362
3R	10003972	3R_10003972_SNP [dm3] 3R_14178250_SNP [dm6]	A	G	5.033e^-4	0.955	SYNONYMOUS_CODING Dop1R1
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	5.036e^-4	0.955	INTRON fas
3R	21237668	3R_21237668_SNP [dm3] 3R_25411946_SNP [dm6]	C	T	5.039e^-4	0.955	INTRON Fur1
2L	3634285	2L_3634285_SNP [dm3] 2L_3634285_SNP [dm6]	C	T	5.060e^-4	0.955	SYNONYMOUS_CODING for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2L	9705679	2L_9705679_SNP [dm3] 2L_9705679_SNP [dm6]	G	A	5.064e^-4	0.955	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18976821	2R_18976821_INS [dm3] 2R_23089298_INS [dm6]	G	GG	5.064e^-4	0.955	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	5.075e^-4	0.955	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
2R	7200898	2R_7200898_SNP [dm3] 2R_11313393_SNP [dm6]	C	T	5.079e^-4	0.955	INTRON nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14058746	2L_14058746_SNP [dm3] 2L_14058746_SNP [dm6]	A	G	5.080e^-4	0.955	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	3811201	2L_3811201_SNP [dm3] 2L_3811201_SNP [dm6]	T	A	5.082e^-4	0.955	SYNONYMOUS_CODING CG3407 DOWNSTREAM Reph	TF binding site mE1_TFBS_cad
X	4493276	X_4493276_SNP [dm3] X_4599243_SNP [dm6]	C	A	5.088e^-4	0.955	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	4493295	X_4493295_SNP [dm3] X_4599262_SNP [dm6]	G	C	5.088e^-4	0.955	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	4493461	X_4493461_SNP [dm3] X_4599428_SNP [dm6]	T	C	5.088e^-4	0.955	INTRON CR32773	TF binding site BDTNP1_TFBS_dl
X	9449377	X_9449377_SNP [dm3] X_9555344_SNP [dm6]	C	T	5.096e^-4	0.955	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	21106881	2L_21106881_SNP [dm3] 2L_21106881_SNP [dm6]	T	G	5.101e^-4	0.955	UPSTREAM Nhe2 INTRON Nhe2 EXON CR44056	TF binding site BDTNP1_TFBS_dl
4	371028	4_371028_SNP [dm3] 4_350402_SNP [dm6]	A	T	5.113e^-4	0.955	INTRON PMCA
2R	16366469	2R_16366469_SNP [dm3] 2R_20478964_SNP [dm6]	C	T	5.117e^-4	0.955	DOWNSTREAM CG12484 INTERGENIC
X	13677503	X_13677503_SNP [dm3] X_13783470_SNP [dm6]	C	A	5.129e^-4	0.955	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	676864	3L_676864_SNP [dm3] 3L_676864_SNP [dm6]	C	T	5.133e^-4	0.955	INTERGENIC
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	5.136e^-4	0.955	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	21340995	3R_21340995_SNP [dm3] 3R_25515273_SNP [dm6]	G	A	5.146e^-4	0.955	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6405119	2L_6405119_SNP [dm3] 2L_6405119_SNP [dm6]	C	T	5.149e^-4	0.955	INTRON CG42368
2R	16597637	2R_16597637_SNP [dm3] 2R_20710132_SNP [dm6]	G	T	5.149e^-4	0.955	INTRON dpr
3R	16041639	3R_16041639_SNP [dm3] 3R_20215917_SNP [dm6]	G	C	5.151e^-4	0.955	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2R	7814948	2R_7814948_SNP [dm3] 2R_11927443_SNP [dm6]	T	A	5.153e^-4	0.955	INTERGENIC
2L	6844002	2L_6844002_SNP [dm3] 2L_6844002_SNP [dm6]	A	C	5.157e^-4	0.955	INTERGENIC
3R	26005430	3R_26005430_SNP [dm3] 3R_30179708_SNP [dm6]	T	C	5.161e^-4	0.955	UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	5.168e^-4	0.955	INTERGENIC
X	16723252	X_16723252_SNP [dm3] X_16829219_SNP [dm6]	T	C	5.172e^-4	0.955	INTRON CG13004
2L	9438625	2L_9438625_SNP [dm3] 2L_9438625_SNP [dm6]	T	C	5.175e^-4	0.955	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	21189046	3R_21189046_SNP [dm3] 3R_25363324_SNP [dm6]	T	C	5.185e^-4	0.955	INTRON Fur1
2L	1953779	2L_1953779_INS [dm3] 2L_1953779_INS [dm6]	G	GCGG	5.191e^-4	0.955	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7773557	2R_7773557_SNP [dm3] 2R_11886052_SNP [dm6]	C	T	5.195e^-4	0.955	UPSTREAM cuff & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
4	430836	4_430836_SNP [dm3] 4_410210_SNP [dm6]	A	T	5.198e^-4	0.955	INTERGENIC
3L	14930722	3L_14930722_SNP [dm3] 3L_14937622_SNP [dm6]	G	A	5.201e^-4	0.955	INTRON DCX-EMAP
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	5.214e^-4	0.955	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
3R	17782460	3R_17782460_SNP [dm3] 3R_21956738_SNP [dm6]	G	C	5.215e^-4	0.955	INTRON Eip93F
2L	4767559	2L_4767559_SNP [dm3] 2L_4767559_SNP [dm6]	C	T	5.216e^-4	0.955	INTRON CG15630
4	353703	4_353703_INS [dm3] 4_333077_INS [dm6]	A	ATGGGAAT	5.219e^-4	0.955	INTRON PMCA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1497947	2R_1497947_SNP [dm3] 2R_5610442_SNP [dm6]	T	C	5.221e^-4	0.955	DOWNSTREAM CG17508 INTRON CG17508	transposable element FlyBase
X	17166826	X_17166826_SNP [dm3] X_17272793_SNP [dm6]	A	G	5.230e^-4	0.955	INTRON f	TF binding site mE1_TFBS_cad
4	338481	4_338481_SNP [dm3] 4_317855_SNP [dm6]	G	T	5.231e^-4	0.955	INTRON CG32850	TF binding site mE1_TFBS_Trl
2L	7279107	2L_7279107_SNP [dm3] 2L_7279107_SNP [dm6]	G	A	5.236e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.354e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01175

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	10.6464	0.0049

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1749 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	3.521e^-7	0.66	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	4.742e^-6	0.983	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	5.610e^-6	0.983	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	7.579e^-6	0.983	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	8.595e^-6	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	8.648e^-6	0.983	INTERGENIC
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.054e^-5	0.983	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.054e^-5	0.983	INTRON mam	TF binding site BDTNP1_TFBS_dl
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	1.066e^-5	0.983	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	1.082e^-5	0.983	INTRON FMRFaR
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.175e^-5	0.983	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	1.176e^-5	0.983	INTRON fas
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	1.427e^-5	0.983	INTRON HDAC4
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	1.480e^-5	0.983	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	1.488e^-5	0.983	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	1.492e^-5	0.983	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	1.779e^-5	0.983	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	1.873e^-5	0.983	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	1.893e^-5	0.983	INTRON Eip63E
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	1.985e^-5	0.983	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	2.121e^-5	0.983	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	2.225e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	2.277e^-5	0.983	INTRON Eip63E
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	2.361e^-5	0.983	INTRON spg
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	2.381e^-5	0.983	INTRON lilli
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	2.424e^-5	0.983	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	2.515e^-5	0.983	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	2.521e^-5	0.983	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	2.608e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	2.626e^-5	0.983	INTRON Ten-a
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	2.628e^-5	0.983	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	2.741e^-5	0.983	DOWNSTREAM CR44026 INTRON baz
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	2.965e^-5	0.983	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	2.967e^-5	0.983	DOWNSTREAM CG33460 INTRON CG33461
2L	10088520	2L_10088520_SNP [dm3] 2L_10088520_SNP [dm6]	G	A	3.010e^-5	0.983	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	3.029e^-5	0.983	DOWNSTREAM inv INTERGENIC
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	3.252e^-5	0.983	INTRON psq
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	3.309e^-5	0.983	INTRON bbg
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	3.344e^-5	0.983	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	3.375e^-5	0.983	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	3.392e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	3.410e^-5	0.983	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	3.438e^-5	0.983	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	3.598e^-5	0.983	INTERGENIC
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	3.672e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10089177	2L_10089177_SNP [dm3] 2L_10089177_SNP [dm6]	T	C	3.705e^-5	0.983	INTRON CG44153
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	3.717e^-5	0.983	UPSTREAM CG33225 INTERGENIC
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	3.878e^-5	0.983	INTRON spir & 1 other
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	3.878e^-5	0.983	INTERGENIC
3L	11927865	3L_11927865_SNP [dm3] 3L_11934765_SNP [dm6]	C	T	3.914e^-5	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	3.964e^-5	0.983	INTRON CG33700
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	4.076e^-5	0.983	INTRON spir
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	4.081e^-5	0.983	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	4.127e^-5	0.983	INTERGENIC
3L	11927827	3L_11927827_SNP [dm3] 3L_11934727_SNP [dm6]	C	T	4.274e^-5	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	4.356e^-5	0.983	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	4.412e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	4.508e^-5	0.983	INTRON spri
2R	17962080	2R_17962080_SNP [dm3] 2R_22074575_SNP [dm6]	T	C	4.648e^-5	0.983	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	4.668e^-5	0.983	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	4.759e^-5	0.983	INTRON CG34377
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	4.839e^-5	0.983	INTERGENIC
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	4.980e^-5	0.983	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	4.995e^-5	0.983	INTRON blow	TF binding site mE1_TFBS_chinmo
2L	18950671	2L_18950671_SNP [dm3] 2L_18950671_SNP [dm6]	C	A	5.030e^-5	0.983	NON_SYNONYMOUS_CODING CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_sens
2L	9561442	2L_9561442_SNP [dm3] 2L_9561442_SNP [dm6]	C	A	5.065e^-5	0.983	INTRON jp
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	5.071e^-5	0.983	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	5.121e^-5	0.983	INTRON FMRFaR
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	5.162e^-5	0.983	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	5.236e^-5	0.983	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	5.472e^-5	0.983	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	5.501e^-5	0.983	INTRON bbg
3L	7485024	3L_7485024_SNP [dm3] 3L_7491924_SNP [dm6]	G	A	5.511e^-5	0.983	NON_SYNONYMOUS_CODING Cyp316a1
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	5.809e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	5.929e^-5	0.983	INTRON bbg
3L	12354566	3L_12354566_SNP [dm3] 3L_12361466_SNP [dm6]	A	G	5.987e^-5	0.983	INTERGENIC
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	6.092e^-5	0.983	INTRON sm
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	6.098e^-5	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	6.155e^-5	0.983	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	6.168e^-5	0.983	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9502337	2R_9502337_SNP [dm3] 2R_13614832_SNP [dm6]	T	C	6.191e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	6.194e^-5	0.983	INTRON CG44153
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	6.229e^-5	0.983	INTRON msi
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	6.264e^-5	0.983	INTRON Spn31A
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	6.313e^-5	0.983	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	6.363e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	6.374e^-5	0.983	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	6.495e^-5	0.983	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	6.774e^-5	0.983	UPSTREAM bbg INTRON bbg
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	6.795e^-5	0.983	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	6.797e^-5	0.983	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4585460	X_4585460_SNP [dm3] X_4691427_SNP [dm6]	G	C	6.850e^-5	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	6.902e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	6.976e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	6.976e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	6.976e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	6.976e^-5	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	7.036e^-5	0.983	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	7.080e^-5	0.983	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
3L	9190781	3L_9190781_SNP [dm3] 3L_9197681_SNP [dm6]	C	A	7.097e^-5	0.983	INTERGENIC
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	7.103e^-5	0.983	INTERGENIC
2L	9564582	2L_9564582_SNP [dm3] 2L_9564582_SNP [dm6]	G	A	7.166e^-5	0.983	INTRON jp
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	7.310e^-5	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	7.353e^-5	0.983	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	7.364e^-5	0.983	INTERGENIC	regulatory region REDfly_CRMs
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	7.402e^-5	0.983	SYNONYMOUS_CODING S-Lap2
3R	14086585	3R_14086585_SNP [dm3] 3R_18260863_SNP [dm6]	T	C	7.442e^-5	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	7.497e^-5	0.983	INTRON CG7120
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	7.502e^-5	0.983	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	7.510e^-5	0.983	INTRON CG31637
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	7.601e^-5	0.983	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	7.644e^-5	0.983	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5978376	2L_5978376_SNP [dm3] 2L_5978376_SNP [dm6]	A	C	7.753e^-5	0.983	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	7.803e^-5	0.983	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	7.844e^-5	0.983	INTERGENIC
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	7.844e^-5	0.983	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	7.862e^-5	0.983	INTRON Rbp6
X	21895236	X_21895236_SNP [dm3] X_22493400_SNP [dm6]	T	A	7.868e^-5	0.983	INTRON l_1_G0196
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	7.925e^-5	0.983	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	7.951e^-5	0.983	INTERGENIC
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	7.989e^-5	0.983	INTRON spg
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	8.009e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	8.051e^-5	0.983	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	8.064e^-5	0.983	INTRON rgn
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	8.390e^-5	0.983	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	8.395e^-5	0.983	INTRON Eip63E
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	8.574e^-5	0.983	INTRON rgn
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	8.724e^-5	0.983	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6866877	2L_6866877_SNP [dm3] 2L_6866877_SNP [dm6]	G	T	8.727e^-5	0.983	INTRON Nha1
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	8.737e^-5	0.983	INTRON hdc
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	9.005e^-5	0.983	INTRON twin
2L	18972604	2L_18972604_SNP [dm3] 2L_18972604_SNP [dm6]	G	A	9.008e^-5	0.983	SPLICE_SITE_REGION CG10639 SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	18972610	2L_18972610_SNP [dm3] 2L_18972610_SNP [dm6]	T	C	9.008e^-5	0.983	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	5993439	2L_5993439_SNP [dm3] 2L_5993439_SNP [dm6]	C	A	9.029e^-5	0.983	INTRON lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2515493	3L_2515493_SNP [dm3] 3L_2515493_SNP [dm6]	C	T	9.061e^-5	0.983	INTRON Spn
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	9.098e^-5	0.983	INTRON Sema-2b
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	9.239e^-5	0.983	UPSTREAM jp INTRON jp
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	9.297e^-5	0.983	SYNONYMOUS_CODING CG31321
3L	3007694	3L_3007694_SNP [dm3] 3L_3007694_SNP [dm6]	T	A	9.348e^-5	0.983	INTRON FMRFaR
2L	9564765	2L_9564765_INS [dm3] 2L_9564765_INS [dm6]	T	TTAGCTACACA...	9.482e^-5	0.983	INTRON jp
2L	9564767	2L_9564767_DEL [dm3] 2L_9564767_DEL [dm6]	GTTAAATTACAATAC...	G	9.482e^-5	0.983	INTRON jp
X	4585531	X_4585531_INS [dm3] X_4691498_INS [dm6]	G	GAGTGTGTG	9.484e^-5	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	9.510e^-5	0.983	INTRON sm
3L	6879604	3L_6879604_SNP [dm3] 3L_6886504_SNP [dm6]	A	G	9.567e^-5	0.983	INTERGENIC
2L	18972596	2L_18972596_SNP [dm3] 2L_18972596_SNP [dm6]	A	G	9.753e^-5	0.983	SPLICE_SITE_REGION CG10639 DOWNSTREAM Tango6 INTRON CG10639	TF binding site mE1_TFBS_cad
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	9.824e^-5	0.983	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	9.881e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	9.914e^-5	0.983	INTRON FMRFaR
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	9.921e^-5	0.983	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	9.952e^-5	0.983	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	25983575	3R_25983575_SNP [dm3] 3R_30157853_SNP [dm6]	G	A	1.001e^-4	0.983	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	1.002e^-4	0.983	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.006e^-4	0.983	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3007740	3L_3007740_INS [dm3] 3L_3007740_INS [dm6]	T	TAAAAAAATATGTTTTT...	1.011e^-4	0.983	INTRON FMRFaR
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	1.022e^-4	0.983	INTERGENIC
2R	10304139	2R_10304139_DEL [dm3] 2R_14416634_DEL [dm6]	AA	A	1.028e^-4	0.983	INTERGENIC
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	1.036e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	1.037e^-4	0.983	INTRON Ten-a
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	1.038e^-4	0.983	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12993292	3R_12993292_SNP [dm3] 3R_17167570_SNP [dm6]	T	A	1.047e^-4	0.983	INTRON Mur89F
2L	9564726	2L_9564726_SNP [dm3] 2L_9564726_SNP [dm6]	C	A	1.050e^-4	0.983	INTRON jp
3L	702297	3L_702297_SNP [dm3] 3L_702297_SNP [dm6]	C	T	1.066e^-4	0.983	INTERGENIC
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	1.071e^-4	0.983	INTERGENIC
2R	17769474	2R_17769474_SNP [dm3] 2R_21881969_SNP [dm6]	C	T	1.073e^-4	0.983	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	1.084e^-4	0.983	UPSTREAM para INTERGENIC
2L	19223729	2L_19223729_SNP [dm3] 2L_19223729_SNP [dm6]	G	A	1.086e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	17177414	3L_17177414_SNP [dm3] 3L_17184314_SNP [dm6]	T	G	1.087e^-4	0.983	INTRON Rbp6
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	1.089e^-4	0.983	UPSTREAM para INTERGENIC
3R	14265909	3R_14265909_SNP [dm3] 3R_18440187_SNP [dm6]	C	G	1.098e^-4	0.983	INTRON fru
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	1.101e^-4	0.983	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3272472	3R_3272472_SNP [dm3] 3R_7446750_SNP [dm6]	T	C	1.102e^-4	0.983	INTERGENIC
3L	14016472	3L_14016472_SNP [dm3] 3L_14023372_SNP [dm6]	T	C	1.107e^-4	0.983	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2L	16886535	2L_16886535_SNP [dm3] 2L_16886535_SNP [dm6]	T	C	1.112e^-4	0.983	DOWNSTREAM CG6115 & 2 others INTERGENIC
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	1.116e^-4	0.983	INTRON bbg	TF binding site BDTNP1_TFBS_prd
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	1.117e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	1.123e^-4	0.983	SYNONYMOUS_CODING Sytalpha
2R	9204973	2R_9204973_SNP [dm3] 2R_13317468_SNP [dm6]	G	C	1.124e^-4	0.983	INTERGENIC
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	1.136e^-4	0.983	INTRON Mp
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.146e^-4	0.983	INTRON CG7120
X	17076851	X_17076851_DEL [dm3] X_17182818_DEL [dm6]	TACTCAGATAAGT...	T	1.146e^-4	0.983	DOWNSTREAM CR44026 INTRON baz
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	1.150e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9204972	2R_9204972_SNP [dm3] 2R_13317467_SNP [dm6]	T	G	1.153e^-4	0.983	INTERGENIC
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	1.166e^-4	0.983	DOWNSTREAM CR44792 INTERGENIC
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	1.184e^-4	0.983	INTRON Sh
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	1.197e^-4	0.983	INTERGENIC
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	1.204e^-4	0.983	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	1.219e^-4	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.226e^-4	0.983	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	1.231e^-4	0.983	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	20489173	2R_20489173_SNP [dm3] 2R_24601650_SNP [dm6]	A	T	1.235e^-4	0.983	UTR_3_PRIME CG3548 UPSTREAM CG3565	TF binding site mE1_TFBS_chinmo
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.244e^-4	0.983	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5978045	2L_5978045_SNP [dm3] 2L_5978045_SNP [dm6]	T	G	1.250e^-4	0.983	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6866863	2L_6866863_SNP [dm3] 2L_6866863_SNP [dm6]	C	G	1.259e^-4	0.983	INTRON Nha1
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	1.271e^-4	0.983	UPSTREAM CG5758 INTERGENIC
2R	7796195	2R_7796195_SNP [dm3] 2R_11908690_SNP [dm6]	T	G	1.279e^-4	0.983	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1496810	2R_1496810_SNP [dm3] 2R_5609305_SNP [dm6]	A	T	1.297e^-4	0.983	SYNONYMOUS_CODING CG17508
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	1.323e^-4	0.983	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	17147895	2R_17147895_SNP [dm3] 2R_21260390_SNP [dm6]	C	T	1.329e^-4	0.983	INTRON Rgk3
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	1.334e^-4	0.983	DOWNSTREAM mthl13 INTRON CG33144
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	1.335e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_sens
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.341e^-4	0.983	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7400633	2R_7400633_SNP [dm3] 2R_11513128_SNP [dm6]	G	A	1.342e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9564637	2L_9564637_SNP [dm3] 2L_9564637_SNP [dm6]	A	T	1.372e^-4	0.983	INTRON jp
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	1.373e^-4	0.983	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2R	17403730	2R_17403730_SNP [dm3] 2R_21516225_SNP [dm6]	C	T	1.382e^-4	0.983	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	1.385e^-4	0.983	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11185606	2L_11185606_SNP [dm3] 2L_11185606_SNP [dm6]	T	C	1.409e^-4	0.983	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	7436189	2L_7436189_SNP [dm3] 2L_7436189_SNP [dm6]	G	A	1.418e^-4	0.983	INTERGENIC
2L	9556526	2L_9556526_SNP [dm3] 2L_9556526_SNP [dm6]	G	A	1.431e^-4	0.983	INTRON jp
2R	10301988	2R_10301988_SNP [dm3] 2R_14414483_SNP [dm6]	A	G	1.433e^-4	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9561853	2L_9561853_SNP [dm3] 2L_9561853_SNP [dm6]	G	T	1.436e^-4	0.983	INTRON jp
3L	6785353	3L_6785353_SNP [dm3] 3L_6792253_SNP [dm6]	C	T	1.444e^-4	0.983	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	9560410	2R_9560410_DEL [dm3] 2R_13672905_DEL [dm6]	ACGCAAA	TG	1.453e^-4	0.983	UPSTREAM CR45031 INTRON fas
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	1.454e^-4	0.983	UPSTREAM para INTERGENIC
2R	3309327	2R_3309327_SNP [dm3] 2R_7421822_SNP [dm6]	A	G	1.458e^-4	0.983	DOWNSTREAM CR44202 INTRON so	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	1.462e^-4	0.983	INTRON rgn
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	1.471e^-4	0.983	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18976864	2R_18976864_SNP [dm3] 2R_23089341_SNP [dm6]	T	C	1.489e^-4	0.983	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	1.506e^-4	0.983	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9712547	2R_9712547_SNP [dm3] 2R_13825042_SNP [dm6]	G	C	1.506e^-4	0.983	NON_SYNONYMOUS_CODING CG13339 UPSTREAM fl_2_d	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	1.524e^-4	0.983	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7436184	2L_7436184_SNP [dm3] 2L_7436184_SNP [dm6]	T	A	1.535e^-4	0.983	INTERGENIC
2R	7410324	2R_7410324_INS [dm3] 2R_11522819_INS [dm6]	T	TAATT	1.542e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	18768582	2R_18768582_SNP [dm3] 2R_22881059_SNP [dm6]	T	A	1.546e^-4	0.983	UTR_3_PRIME PIP5K59B DOWNSTREAM CG3501
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	1.558e^-4	0.983	SYNONYMOUS_CODING CG31321
2R	4271286	2R_4271286_SNP [dm3] 2R_8383781_SNP [dm6]	A	T	1.559e^-4	0.983	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	1.561e^-4	0.983	UTR_3_PRIME Sema-2a
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.564e^-4	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.564e^-4	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	4813097	2L_4813097_SNP [dm3] 2L_4813097_SNP [dm6]	C	T	1.570e^-4	0.983	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14086037	3R_14086037_SNP [dm3] 3R_18260315_SNP [dm6]	C	T	1.573e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	1.577e^-4	0.983	INTRON spir & 1 other
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	1.582e^-4	0.983	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19913638	2L_19913638_INS [dm3] 2L_19913638_INS [dm6]	T	TT	1.590e^-4	0.983	UPSTREAM Victoria INTRON sick
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	1.591e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	1.591e^-4	0.983	INTRON CG9850
3R	25548762	3R_25548762_SNP [dm3] 3R_29723040_SNP [dm6]	A	C	1.592e^-4	0.983	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	1.602e^-4	0.983	DOWNSTREAM mthl13 INTRON CG33144
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	1.614e^-4	0.983	INTRON kibra
3L	15876268	3L_15876268_SNP [dm3] 3L_15883168_SNP [dm6]	G	T	1.616e^-4	0.983	INTRON pHCl
3R	4423569	3R_4423569_SNP [dm3] 3R_8597847_SNP [dm6]	T	A	1.616e^-4	0.983	INTRON 5-HT2B
3R	4991146	3R_4991146_SNP [dm3] 3R_9165424_SNP [dm6]	T	A	1.661e^-4	0.983	INTRON pum
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	1.665e^-4	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	1.674e^-4	0.983	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	1.681e^-4	0.983	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	1.681e^-4	0.983	INTERGENIC
2R	4271293	2R_4271293_SNP [dm3] 2R_8383788_SNP [dm6]	T	C	1.683e^-4	0.983	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	1.695e^-4	0.983	INTRON kirre
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	1.696e^-4	0.983	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	1.700e^-4	0.983	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	1.702e^-4	0.983	INTERGENIC
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	1.705e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	1.716e^-4	0.983	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6870694	2L_6870694_DEL [dm3] 2L_6870694_DEL [dm6]	CCAACTATATAGC...	C	1.719e^-4	0.983	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	3007752	3L_3007752_SNP [dm3] 3L_3007752_SNP [dm6]	G	C	1.736e^-4	0.983	INTRON FMRFaR
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	1.753e^-4	0.983	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	15663385	3R_15663385_SNP [dm3] 3R_19837663_SNP [dm6]	G	C	1.760e^-4	0.983	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	1.760e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_inv
2L	19329736	2L_19329736_SNP [dm3] 2L_19329736_SNP [dm6]	T	G	1.764e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5556044	2L_5556044_SNP [dm3] 2L_5556044_SNP [dm6]	A	G	1.764e^-4	0.983	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2R	17961891	2R_17961891_SNP [dm3] 2R_22074386_SNP [dm6]	A	C	1.768e^-4	0.983	NON_SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	1.772e^-4	0.983	INTRON Dscam2	TF binding site mE1_TFBS_HSA
2R	19117745	2R_19117745_SNP [dm3] 2R_23230222_SNP [dm6]	G	T	1.779e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	1.779e^-4	0.983	INTRON bbg
3L	14507201	3L_14507201_SNP [dm3] 3L_14514101_SNP [dm6]	A	T	1.782e^-4	0.983	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	1.783e^-4	0.983	UPSTREAM bbg INTRON bbg
3L	12343191	3L_12343191_SNP [dm3] 3L_12350091_SNP [dm6]	G	A	1.794e^-4	0.983	INTRON CrzR
3L	14930722	3L_14930722_SNP [dm3] 3L_14937622_SNP [dm6]	G	A	1.796e^-4	0.983	INTRON DCX-EMAP
2R	19413659	2R_19413659_SNP [dm3] 2R_23526136_SNP [dm6]	C	T	1.806e^-4	0.983	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	888379	3L_888379_SNP [dm3] 3L_888379_SNP [dm6]	T	G	1.807e^-4	0.983	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	1.819e^-4	0.983	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	1.822e^-4	0.983	INTERGENIC
2R	11659237	2R_11659237_SNP [dm3] 2R_15771732_SNP [dm6]	T	C	1.831e^-4	0.983	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	1.832e^-4	0.983	INTRON fas
2R	6981077	2R_6981077_SNP [dm3] 2R_11093572_SNP [dm6]	T	C	1.838e^-4	0.983	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	1.844e^-4	0.983	INTRON Spn31A
2R	13416509	2R_13416509_SNP [dm3] 2R_17529004_SNP [dm6]	C	A	1.851e^-4	0.983	INTRON Patronin
3L	16873016	3L_16873016_SNP [dm3] 3L_16879916_SNP [dm6]	C	T	1.857e^-4	0.983	DOWNSTREAM CG32170 INTRON Lmpt
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	1.863e^-4	0.983	INTRON CG5888
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	1.867e^-4	0.983	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	1.870e^-4	0.983	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
2L	9706636	2L_9706636_SNP [dm3] 2L_9706636_SNP [dm6]	A	G	1.875e^-4	0.983	SPLICE_SITE_REGION pelo UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	1.877e^-4	0.983	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	27209881	3R_27209881_SNP [dm3] 3R_31384159_SNP [dm6]	C	T	1.879e^-4	0.983	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3L	12997653	3L_12997653_SNP [dm3] 3L_13004553_SNP [dm6]	G	A	1.882e^-4	0.983	INTERGENIC
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	1.882e^-4	0.983	INTRON msi
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	1.883e^-4	0.983	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	23562513	3R_23562513_DEL [dm3] 3R_27736791_DEL [dm6]	CAAGGCC	C	1.885e^-4	0.983	UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
3R	22542180	3R_22542180_SNP [dm3] 3R_26716458_SNP [dm6]	A	G	1.897e^-4	0.983	NON_SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	1.899e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	20827205	3R_20827205_SNP [dm3] 3R_25001483_SNP [dm6]	A	G	1.902e^-4	0.983	SYNONYMOUS_CODING tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	1.903e^-4	0.983	INTRON jigr1
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	1.904e^-4	0.983	UPSTREAM CG1722 INTRON CG32521
3L	16662038	3L_16662038_SNP [dm3] 3L_16668938_SNP [dm6]	T	C	1.917e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	1.918e^-4	0.983	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
2R	1487909	2R_1487909_SNP [dm3] 2R_5600404_SNP [dm6]	G	A	1.925e^-4	0.983	INTERGENIC
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	1.926e^-4	0.983	INTERGENIC
2L	9562102	2L_9562102_SNP [dm3] 2L_9562102_SNP [dm6]	C	G	1.931e^-4	0.983	INTRON jp
3L	10475830	3L_10475830_SNP [dm3] 3L_10482730_SNP [dm6]	C	T	1.932e^-4	0.983	INTRON A2bp1
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	1.935e^-4	0.983	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2R	4294587	2R_4294587_SNP [dm3] 2R_8407082_SNP [dm6]	T	C	1.943e^-4	0.983	INTRON CG2121
2L	9564663	2L_9564663_SNP [dm3] 2L_9564663_SNP [dm6]	A	C	1.944e^-4	0.983	INTRON jp
X	4315511	X_4315511_SNP [dm3] X_4421478_SNP [dm6]	C	T	1.961e^-4	0.983	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	14362790	2L_14362790_SNP [dm3] 2L_14362790_SNP [dm6]	A	G	1.971e^-4	0.983	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	1.976e^-4	0.983	INTRON bbg	TF binding site mE1_TFBS_cnc
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	1.989e^-4	0.983	INTERGENIC
2L	4684942	2L_4684942_SNP [dm3] 2L_4684942_SNP [dm6]	A	T	1.991e^-4	0.983	SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	1.993e^-4	0.983	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	2.003e^-4	0.983	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18108442	2L_18108442_SNP [dm3] 2L_18108442_SNP [dm6]	G	A	2.005e^-4	0.983	INTERGENIC
2L	21903648	2L_21903648_SNP [dm3] 2L_21903648_SNP [dm6]	A	C	2.006e^-4	0.983	NON_SYNONYMOUS_CODING CG1421
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	2.007e^-4	0.983	INTRON dpr3
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	2.014e^-4	0.983	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	2.015e^-4	0.983	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	2.017e^-4	0.983	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	2.019e^-4	0.983	INTRON Sh
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	2.029e^-4	0.983	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17468956	2L_17468956_SNP [dm3] 2L_17468956_SNP [dm6]	G	A	2.033e^-4	0.983	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	2.051e^-4	0.983	INTRON a
3R	14086265	3R_14086265_SNP [dm3] 3R_18260543_SNP [dm6]	G	A	2.053e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	23255363	3L_23255363_SNP [dm3] 3L_23262263_SNP [dm6]	T	A	2.053e^-4	0.983	INTRON nAChRalpha4
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	2.056e^-4	0.983	UPSTREAM CG11112 INTRON Eaf
X	4585380	X_4585380_SNP [dm3] X_4691347_SNP [dm6]	C	G	2.061e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4692879	2L_4692879_SNP [dm3] 2L_4692879_SNP [dm6]	T	A	2.075e^-4	0.983	INTERGENIC
X	4585372	X_4585372_SNP [dm3] X_4691339_SNP [dm6]	C	G	2.082e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25738543	3R_25738543_SNP [dm3] 3R_29912821_SNP [dm6]	C	T	2.083e^-4	0.983	UTR_3_PRIME CG31036 DOWNSTREAM Capa
2R	17963317	2R_17963317_SNP [dm3] 2R_22075812_SNP [dm6]	T	A	2.084e^-4	0.983	UPSTREAM GlcT-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19913640	2L_19913640_SNP [dm3] 2L_19913640_SNP [dm6]	T	G	2.091e^-4	0.983	UPSTREAM Victoria INTRON sick
3R	25738476	3R_25738476_SNP [dm3] 3R_29912754_SNP [dm6]	A	G	2.092e^-4	0.983	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
3L	10471210	3L_10471210_SNP [dm3] 3L_10478110_SNP [dm6]	G	C	2.101e^-4	0.983	INTERGENIC
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	2.110e^-4	0.983	UTR_3_PRIME CG17129
2L	18139644	2L_18139644_SNP [dm3] 2L_18139644_SNP [dm6]	G	A	2.123e^-4	0.983	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2R	8326865	2R_8326865_INS [dm3] 2R_12439360_INS [dm6]	A	ATCTG	2.128e^-4	0.983	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	2.130e^-4	0.983	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	2.131e^-4	0.983	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	18420946	2L_18420946_SNP [dm3] 2L_18420946_SNP [dm6]	C	T	2.138e^-4	0.983	INTERGENIC
2L	12511132	2L_12511132_SNP [dm3] 2L_12511132_SNP [dm6]	T	C	2.152e^-4	0.983	INTRON bun
2L	9561278	2L_9561278_SNP [dm3] 2L_9561278_SNP [dm6]	C	T	2.152e^-4	0.983	UPSTREAM jp INTRON jp
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	2.152e^-4	0.983	UTR_3_PRIME hec DOWNSTREAM fne
2L	14362796	2L_14362796_SNP [dm3] 2L_14362796_SNP [dm6]	A	T	2.155e^-4	0.983	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	10767393	3L_10767393_SNP [dm3] 3L_10774293_SNP [dm6]	G	C	2.167e^-4	0.983	DOWNSTREAM CG43245 INTERGENIC
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	2.170e^-4	0.983	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2R	18033065	2R_18033065_SNP [dm3] 2R_22145560_SNP [dm6]	G	A	2.186e^-4	0.983	INTRON a
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	2.193e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	9705679	2L_9705679_SNP [dm3] 2L_9705679_SNP [dm6]	G	A	2.195e^-4	0.983	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	2.204e^-4	0.983	NON_SYNONYMOUS_CODING mbc
3L	2831855	3L_2831855_SNP [dm3] 3L_2831855_SNP [dm6]	A	T	2.211e^-4	0.983	INTRON CG43444
3L	10475848	3L_10475848_SNP [dm3] 3L_10482748_SNP [dm6]	A	C	2.231e^-4	0.983	INTRON A2bp1
2R	11659189	2R_11659189_SNP [dm3] 2R_15771684_SNP [dm6]	A	G	2.235e^-4	0.983	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	3008224	3L_3008224_SNP [dm3] 3L_3008224_SNP [dm6]	A	G	2.239e^-4	0.983	INTRON FMRFaR
2R	3288046	2R_3288046_SNP [dm3] 2R_7400541_SNP [dm6]	C	T	2.250e^-4	0.983	UPSTREAM CG11112 INTRON Eaf
X	2933209	X_2933209_SNP [dm3] X_3039176_SNP [dm6]	G	A	2.250e^-4	0.983	INTRON kirre
2L	15430333	2L_15430333_INS [dm3] 2L_15430333_INS [dm6]	G	GCTG	2.259e^-4	0.983	INTERGENIC
2L	2899377	2L_2899377_SNP [dm3] 2L_2899377_SNP [dm6]	C	A	2.277e^-4	0.983	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	2.294e^-4	0.983	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	2.313e^-4	0.983	INTRON kirre
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	2.326e^-4	0.983	UPSTREAM CG44476 INTERGENIC
2L	14362763	2L_14362763_SNP [dm3] 2L_14362763_SNP [dm6]	G	A	2.327e^-4	0.983	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	2.330e^-4	0.983	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	2.331e^-4	0.983	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11698588	3L_11698588_SNP [dm3] 3L_11705488_SNP [dm6]	G	C	2.334e^-4	0.983	INTRON CG11658
2R	1504828	2R_1504828_SNP [dm3] 2R_5617323_SNP [dm6]	C	G	2.335e^-4	0.983	INTERGENIC
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	2.338e^-4	0.983	UTR_3_PRIME hec DOWNSTREAM fne
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	2.345e^-4	0.983	INTRON fzy	TF binding site mE1_TFBS_sens
3R	12993250	3R_12993250_SNP [dm3] 3R_17167528_SNP [dm6]	A	G	2.346e^-4	0.983	INTRON Mur89F
2R	1489406	2R_1489406_SNP [dm3] 2R_5601901_SNP [dm6]	T	G	2.357e^-4	0.983	INTERGENIC
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	2.357e^-4	0.983	INTRON jigr1
3R	20282294	3R_20282294_SNP [dm3] 3R_24456572_SNP [dm6]	C	T	2.369e^-4	0.983	UTR_5_PRIME nAChRalpha1
X	11527001	X_11527001_SNP [dm3] X_11632968_SNP [dm6]	C	A	2.373e^-4	0.983	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3525088	3L_3525088_SNP [dm3] 3L_3525088_SNP [dm6]	T	A	2.373e^-4	0.983	INTRON Eip63E
2L	6500252	2L_6500252_SNP [dm3] 2L_6500252_SNP [dm6]	T	A	2.376e^-4	0.983	INTRON CG31637
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	2.387e^-4	0.983	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
3R	27209933	3R_27209933_SNP [dm3] 3R_31384211_SNP [dm6]	T	C	2.387e^-4	0.983	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	2.390e^-4	0.983	INTERGENIC
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	2.391e^-4	0.983	INTRON nemy
2L	4267830	2L_4267830_SNP [dm3] 2L_4267830_SNP [dm6]	C	T	2.409e^-4	0.983	INTERGENIC
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	2.419e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	2.423e^-4	0.983	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
2L	9706787	2L_9706787_SNP [dm3] 2L_9706787_SNP [dm6]	T	C	2.432e^-4	0.983	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	7447883	2L_7447883_SNP [dm3] 2L_7447883_SNP [dm6]	T	A	2.433e^-4	0.983	UTR_5_PRIME santa-maria INTRON santa-maria
X	7102363	X_7102363_SNP [dm3] X_7208330_SNP [dm6]	C	G	2.435e^-4	0.983	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	2.437e^-4	0.983	INTRON dlp	TF binding site BDTNP1_TFBS_dl
X	12146582	X_12146582_SNP [dm3] X_12252549_SNP [dm6]	G	A	2.440e^-4	0.983	INTRON Ten-a
2L	10071131	2L_10071131_SNP [dm3] 2L_10071131_SNP [dm6]	G	A	2.453e^-4	0.983	INTRON CG44153
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	2.454e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16873321	3L_16873321_SNP [dm3] 3L_16880221_SNP [dm6]	C	A	2.464e^-4	0.983	DOWNSTREAM CG32170 INTRON Lmpt
2L	4864962	2L_4864962_SNP [dm3] 2L_4864962_SNP [dm6]	A	T	2.467e^-4	0.983	INTRON pog
2L	5138295	2L_5138295_SNP [dm3] 2L_5138295_SNP [dm6]	C	T	2.470e^-4	0.983	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	2.477e^-4	0.983	INTRON hdc
2L	9563147	2L_9563147_SNP [dm3] 2L_9563147_SNP [dm6]	C	G	2.492e^-4	0.983	INTRON jp
3L	11854901	3L_11854901_SNP [dm3] 3L_11861801_SNP [dm6]	C	T	2.519e^-4	0.983	INTRON CG44837
3L	2703732	3L_2703732_SNP [dm3] 3L_2703732_SNP [dm6]	G	T	2.522e^-4	0.983	INTRON Fife
2L	14417467	2L_14417467_SNP [dm3] 2L_14417467_SNP [dm6]	C	T	2.526e^-4	0.983	UPSTREAM Pburs INTERGENIC
3L	7655307	3L_7655307_SNP [dm3] 3L_7662207_SNP [dm6]	C	T	2.535e^-4	0.983	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_sens
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	2.542e^-4	0.983	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8153986	2R_8153986_SNP [dm3] 2R_12266481_SNP [dm6]	G	T	2.542e^-4	0.983	INTRON Cam
2R	9687752	2R_9687752_SNP [dm3] 2R_13800247_SNP [dm6]	C	T	2.560e^-4	0.983	INTRON Cpr50Cb
2L	18090252	2L_18090252_SNP [dm3] 2L_18090252_SNP [dm6]	A	T	2.561e^-4	0.983	DOWNSTREAM CG15153 INTERGENIC
3R	22227453	3R_22227453_SNP [dm3] 3R_26401731_SNP [dm6]	A	T	2.571e^-4	0.983	DOWNSTREAM ppk15 INTERGENIC
X	4584286	X_4584286_SNP [dm3] X_4690253_SNP [dm6]	A	G	2.587e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15979183	2L_15979183_SNP [dm3] 2L_15979183_SNP [dm6]	C	T	2.593e^-4	0.983	UPSTREAM CG10839 INTERGENIC
2R	9458858	2R_9458858_SNP [dm3] 2R_13571353_SNP [dm6]	T	C	2.608e^-4	0.983	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Stat92E
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	2.609e^-4	0.983	INTRON CAP
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	2.619e^-4	0.983	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	2.620e^-4	0.983	INTERGENIC
2R	11086275	2R_11086275_SNP [dm3] 2R_15198770_SNP [dm6]	A	T	2.630e^-4	0.983	DOWNSTREAM GPHR INTERGENIC
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	2.631e^-4	0.983	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13535345	2R_13535345_SNP [dm3] 2R_17647840_SNP [dm6]	G	A	2.641e^-4	0.983	SYNONYMOUS_CODING CCHa1-R
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	2.648e^-4	0.983	UTR_3_PRIME Sema-2a
3L	1181299	3L_1181299_SNP [dm3] 3L_1181299_SNP [dm6]	A	T	2.656e^-4	0.983	INTERGENIC
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	2.657e^-4	0.983	DOWNSTREAM CR45720 INTERGENIC
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	2.664e^-4	0.983	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5137894	2L_5137894_SNP [dm3] 2L_5137894_SNP [dm6]	T	C	2.665e^-4	0.983	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	18988367	2L_18988367_SNP [dm3] 2L_18988367_SNP [dm6]	A	G	2.667e^-4	0.983	NON_SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7403502	2R_7403502_SNP [dm3] 2R_11515997_SNP [dm6]	C	T	2.677e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10686534	2R_10686534_SNP [dm3] 2R_14799029_SNP [dm6]	C	T	2.686e^-4	0.983	UPSTREAM kn INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	19016249	2R_19016249_SNP [dm3] 2R_23128726_SNP [dm6]	T	A	2.702e^-4	0.983	UPSTREAM CR44455 DOWNSTREAM CR44456 INTRON CG3215
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	2.702e^-4	0.983	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3L	9686227	3L_9686227_SNP [dm3] 3L_9693127_SNP [dm6]	G	A	2.704e^-4	0.983	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	9874410	2R_9874410_SNP [dm3] 2R_13986905_SNP [dm6]	C	G	2.723e^-4	0.983	UTR_3_PRIME RN-tre DOWNSTREAM RN-tre INTRON RN-tre
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	2.751e^-4	0.983	INTRON CG31637
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	2.756e^-4	0.983	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2L	6500065	2L_6500065_INS [dm3] 2L_6500065_INS [dm6]	C	CC	2.756e^-4	0.983	INTRON CG31637
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	2.757e^-4	0.983	INTRON trol
3L	3007737	3L_3007737_SNP [dm3] 3L_3007737_SNP [dm6]	C	T	2.764e^-4	0.983	INTRON FMRFaR
2L	14085797	2L_14085797_SNP [dm3] 2L_14085797_SNP [dm6]	A	T	2.783e^-4	0.983	INTRON nAChRalpha5
3R	22542193	3R_22542193_SNP [dm3] 3R_26716471_SNP [dm6]	A	G	2.793e^-4	0.983	SYNONYMOUS_CODING CG6425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21028618	3L_21028618_SNP [dm3] 3L_21035518_SNP [dm6]	T	C	2.793e^-4	0.983	INTRON siz	TF binding site BDTNP1_TFBS_dl
X	15481923	X_15481923_SNP [dm3] X_15587890_SNP [dm6]	G	A	2.799e^-4	0.983	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1490574	2R_1490574_SNP [dm3] 2R_5603069_SNP [dm6]	T	A	2.801e^-4	0.983	DOWNSTREAM Fis1 INTERGENIC
3R	22227371	3R_22227371_SNP [dm3] 3R_26401649_SNP [dm6]	G	A	2.811e^-4	0.983	DOWNSTREAM ppk15 INTERGENIC
2R	10301877	2R_10301877_SNP [dm3] 2R_14414372_SNP [dm6]	T	A	2.812e^-4	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	12511136	2L_12511136_SNP [dm3] 2L_12511136_SNP [dm6]	A	G	2.825e^-4	0.983	INTRON bun
X	13873530	X_13873530_SNP [dm3] X_13979497_SNP [dm6]	T	C	2.826e^-4	0.983	INTRON mamo
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	2.826e^-4	0.983	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	2.847e^-4	0.983	UTR_3_PRIME CG10562
2R	11479534	2R_11479534_SNP [dm3] 2R_15592029_SNP [dm6]	T	C	2.860e^-4	0.983	INTERGENIC
2L	18099946	2L_18099946_SNP [dm3] 2L_18099946_SNP [dm6]	C	A	2.862e^-4	0.983	INTERGENIC
X	21923458	X_21923458_SNP [dm3] X_22521622_SNP [dm6]	A	T	2.866e^-4	0.983	INTRON CG17600
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	2.868e^-4	0.983	DOWNSTREAM CG31785 INTRON CG5758
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	2.876e^-4	0.983	INTERGENIC
3L	676864	3L_676864_SNP [dm3] 3L_676864_SNP [dm6]	C	T	2.891e^-4	0.983	INTERGENIC
2R	16301581	2R_16301581_SNP [dm3] 2R_20414076_SNP [dm6]	G	T	2.892e^-4	0.983	INTERGENIC
3L	14016490	3L_14016490_SNP [dm3] 3L_14023390_SNP [dm6]	A	G	2.896e^-4	0.983	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
3L	23592526	3L_23592526_SNP [dm3] 3L_23599426_SNP [dm6]	T	C	2.904e^-4	0.983	INTRON AGO3	transposable element FlyBase
X	18363771	X_18363771_SNP [dm3] X_18469738_SNP [dm6]	C	T	2.907e^-4	0.983	INTRON CG32547
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	2.916e^-4	0.983	UPSTREAM para INTERGENIC
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	2.920e^-4	0.983	INTRON Sh
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	2.932e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7437094	2L_7437094_SNP [dm3] 2L_7437094_SNP [dm6]	G	A	2.936e^-4	0.983	UPSTREAM CG5973 INTERGENIC
3R	25738308	3R_25738308_SNP [dm3] 3R_29912586_SNP [dm6]	T	C	2.945e^-4	0.983	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	2.952e^-4	0.983	INTRON nkd
2L	9556456	2L_9556456_SNP [dm3] 2L_9556456_SNP [dm6]	A	T	2.953e^-4	0.983	INTRON jp
3L	13319470	3L_13319470_SNP [dm3] 3L_13326370_SNP [dm6]	A	C	2.955e^-4	0.983	INTERGENIC
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	2.964e^-4	0.983	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	2.971e^-4	0.983	INTRON CR44833 & 1 other
2L	18573998	2L_18573998_SNP [dm3] 2L_18573998_SNP [dm6]	T	A	2.973e^-4	0.983	INTRON Pde11
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	2.974e^-4	0.983	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	2.974e^-4	0.983	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19054164	X_19054164_SNP [dm3] X_19160131_SNP [dm6]	C	T	2.976e^-4	0.983	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12511206	2L_12511206_SNP [dm3] 2L_12511206_SNP [dm6]	G	C	2.982e^-4	0.983	INTRON bun
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	2.989e^-4	0.983	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
3R	22541848	3R_22541848_SNP [dm3] 3R_26716126_SNP [dm6]	G	T	2.990e^-4	0.983	SYNONYMOUS_CODING CG6425	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10535319	2R_10535319_SNP [dm3] 2R_14647814_SNP [dm6]	G	A	2.997e^-4	0.983	INTERGENIC
2L	5759821	2L_5759821_SNP [dm3] 2L_5759821_SNP [dm6]	A	T	2.997e^-4	0.983	UTR_3_PRIME CG11030
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	3.006e^-4	0.983	INTRON Ten-a
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	3.007e^-4	0.983	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
2L	15623420	2L_15623420_SNP [dm3] 2L_15623420_SNP [dm6]	G	C	3.014e^-4	0.983	NON_SYNONYMOUS_CODING Or35a
2L	8705308	2L_8705308_SNP [dm3] 2L_8705308_SNP [dm6]	G	A	3.014e^-4	0.983	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	6870708	2L_6870708_SNP [dm3] 2L_6870708_SNP [dm6]	T	C	3.016e^-4	0.983	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	16873982	3L_16873982_SNP [dm3] 3L_16880882_SNP [dm6]	T	C	3.019e^-4	0.983	INTRON Lmpt
3R	18169851	3R_18169851_SNP [dm3] 3R_22344129_SNP [dm6]	T	A	3.021e^-4	0.983	INTERGENIC
2L	14417942	2L_14417942_INS [dm3] 2L_14417942_INS [dm6]	T	TAGCT	3.028e^-4	0.983	UPSTREAM Pburs INTERGENIC
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	3.030e^-4	0.983	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
X	12146757	X_12146757_SNP [dm3] X_12252724_SNP [dm6]	G	A	3.034e^-4	0.983	INTRON Ten-a
X	4333591	X_4333591_INS [dm3] X_4439558_INS [dm6]	A	ATAGA	3.055e^-4	0.983	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3L	14143083	3L_14143083_SNP [dm3] 3L_14149983_SNP [dm6]	T	C	3.056e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
X	13873470	X_13873470_SNP [dm3] X_13979437_SNP [dm6]	C	T	3.061e^-4	0.983	INTRON mamo
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	3.065e^-4	0.983	INTRON CG17600
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	3.076e^-4	0.983	INTRON CG34377
2R	1897288	2R_1897288_DEL [dm3] 2R_6009783_DEL [dm6]	AATCAAAACA	T	3.097e^-4	0.983	INTRON Src42A
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	3.099e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10644836	3L_10644836_SNP [dm3] 3L_10651736_SNP [dm6]	G	A	3.101e^-4	0.983	INTRON CG32066
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	3.109e^-4	0.983	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	3.109e^-4	0.983	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	22541875	3R_22541875_SNP [dm3] 3R_26716153_SNP [dm6]	G	A	3.110e^-4	0.983	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9198667	2R_9198667_SNP [dm3] 2R_13311162_SNP [dm6]	A	G	3.126e^-4	0.983	INTERGENIC
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	3.134e^-4	0.983	INTRON kirre
3R	25982969	3R_25982969_SNP [dm3] 3R_30157247_SNP [dm6]	A	G	3.135e^-4	0.983	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10238592	2R_10238592_SNP [dm3] 2R_14351087_SNP [dm6]	C	T	3.138e^-4	0.983	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
2R	7812848	2R_7812848_SNP [dm3] 2R_11925343_SNP [dm6]	A	G	3.141e^-4	0.983	INTERGENIC
3L	5172756	3L_5172756_SNP [dm3] 3L_5179656_SNP [dm6]	G	A	3.142e^-4	0.983	INTRON shep
2L	4813088	2L_4813088_SNP [dm3] 2L_4813088_SNP [dm6]	A	C	3.148e^-4	0.983	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7891310	3L_7891310_SNP [dm3] 3L_7898210_SNP [dm6]	A	G	3.155e^-4	0.983	SYNONYMOUS_CODING pbl
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	3.166e^-4	0.983	DOWNSTREAM CG5556 INTERGENIC
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	3.185e^-4	0.983	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	9561445	2L_9561445_SNP [dm3] 2L_9561445_SNP [dm6]	A	T	3.197e^-4	0.983	INTRON jp
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	3.205e^-4	0.983	UPSTREAM para INTERGENIC
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	3.212e^-4	0.983	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
2R	16514473	2R_16514473_SNP [dm3] 2R_20626968_SNP [dm6]	A	T	3.215e^-4	0.983	SYNONYMOUS_CODING CG16742
3R	24741429	3R_24741429_SNP [dm3] 3R_28915707_SNP [dm6]	T	C	3.218e^-4	0.983	INTRON Doa
X	13172704	X_13172704_SNP [dm3] X_13278671_SNP [dm6]	G	A	3.221e^-4	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	3.236e^-4	0.983	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	3.253e^-4	0.983	INTERGENIC
3L	10265934	3L_10265934_SNP [dm3] 3L_10272834_SNP [dm6]	G	T	3.254e^-4	0.983	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	4075985	X_4075985_SNP [dm3] X_4181952_SNP [dm6]	G	A	3.256e^-4	0.983	INTRON Fas2
2L	19882198	2L_19882198_SNP [dm3] 2L_19882198_SNP [dm6]	C	G	3.261e^-4	0.983	INTRON sick
3R	19356813	3R_19356813_SNP [dm3] 3R_23531091_SNP [dm6]	A	T	3.264e^-4	0.983	UPSTREAM CG10175 INTERGENIC
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	3.270e^-4	0.983	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8427241	3R_8427241_SNP [dm3] 3R_12601519_SNP [dm6]	A	T	3.276e^-4	0.983	INTERGENIC
2R	17682858	2R_17682858_SNP [dm3] 2R_21795353_SNP [dm6]	G	T	3.281e^-4	0.983	INTERGENIC
3L	14333587	3L_14333587_SNP [dm3] 3L_14340487_SNP [dm6]	A	G	3.301e^-4	0.983	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	3.308e^-4	0.983	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11298188	2R_11298188_SNP [dm3] 2R_15410683_SNP [dm6]	C	T	3.309e^-4	0.983	INTRON CG43729
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	3.313e^-4	0.983	INTRON mam
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	3.321e^-4	0.983	UPSTREAM CG8997 & 1 other INTRON CenG1A
3R	25982923	3R_25982923_SNP [dm3] 3R_30157201_SNP [dm6]	G	T	3.332e^-4	0.983	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2003024	3L_2003024_SNP [dm3] 3L_2003024_SNP [dm6]	G	A	3.337e^-4	0.983	DOWNSTREAM CG42841 INTERGENIC
3R	10914917	3R_10914917_SNP [dm3] 3R_15089195_SNP [dm6]	T	C	3.340e^-4	0.983	INTRON CG6966	TF binding site mE1_TFBS_Trl
3L	16955852	3L_16955852_SNP [dm3] 3L_16962752_SNP [dm6]	A	G	3.344e^-4	0.983	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	11412367	3L_11412367_SNP [dm3] 3L_11419267_SNP [dm6]	T	G	3.345e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11412379	3L_11412379_SNP [dm3] 3L_11419279_SNP [dm6]	G	A	3.345e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	3.346e^-4	0.983	INTRON Hs3st-A
X	4582882	X_4582882_SNP [dm3] X_4688849_SNP [dm6]	C	G	3.356e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	7428020	3L_7428020_SNP [dm3] 3L_7434920_SNP [dm6]	G	C	3.372e^-4	0.983	UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3830340	2L_3830340_SNP [dm3] 2L_3830340_SNP [dm6]	G	C	3.386e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	21757093	3R_21757093_SNP [dm3] 3R_25931371_SNP [dm6]	C	T	3.395e^-4	0.983	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_inv
X	13172753	X_13172753_SNP [dm3] X_13278720_SNP [dm6]	A	G	3.397e^-4	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7402091	2R_7402091_SNP [dm3] 2R_11514586_SNP [dm6]	C	T	3.429e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	3.461e^-4	0.983	INTRON sick
X	11074231	X_11074231_SNP [dm3] X_11180198_SNP [dm6]	G	A	3.465e^-4	0.983	INTERGENIC
3L	11699269	3L_11699269_SNP [dm3] 3L_11706169_SNP [dm6]	G	T	3.467e^-4	0.983	INTRON CG11658
3R	10914946	3R_10914946_SNP [dm3] 3R_15089224_SNP [dm6]	A	T	3.475e^-4	0.983	INTRON CG6966	TF binding site mE1_TFBS_Trl
2R	5673149	2R_5673149_SNP [dm3] 2R_9785644_SNP [dm6]	G	C	3.479e^-4	0.983	INTRON CG1688
2L	9561419	2L_9561419_SNP [dm3] 2L_9561419_SNP [dm6]	T	A	3.504e^-4	0.983	UPSTREAM jp INTRON jp
2R	9638129	2R_9638129_SNP [dm3] 2R_13750624_SNP [dm6]	T	A	3.509e^-4	0.983	INTERGENIC
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	3.510e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7410419	2R_7410419_INS [dm3] 2R_11522914_INS [dm6]	T	TGTT	3.515e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	3.521e^-4	0.983	INTRON CG1461
3L	891244	3L_891244_SNP [dm3] 3L_891244_SNP [dm6]	G	C	3.522e^-4	0.983	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	3.527e^-4	0.983	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6560546	2R_6560546_SNP [dm3] 2R_10673041_SNP [dm6]	G	A	3.527e^-4	0.983	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	3.531e^-4	0.983	INTRON CG34362
2L	19316364	2L_19316364_SNP [dm3] 2L_19316364_SNP [dm6]	A	C	3.532e^-4	0.983	INTERGENIC
X	14297345	X_14297345_SNP [dm3] X_14403312_SNP [dm6]	G	A	3.534e^-4	0.983	INTRON dpr8
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	3.537e^-4	0.983	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	6503536	X_6503536_SNP [dm3] X_6609503_SNP [dm6]	G	A	3.556e^-4	0.983	INTRON pigs
2L	5569697	2L_5569697_SNP [dm3] 2L_5569697_SNP [dm6]	G	A	3.556e^-4	0.983	INTERGENIC
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	3.562e^-4	0.983	INTRON CG34362
2L	12577657	2L_12577657_DEL [dm3] 2L_12577657_DEL [dm6]	GAAACAATG	G	3.565e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	3.570e^-4	0.983	INTERGENIC
2L	7435837	2L_7435837_SNP [dm3] 2L_7435837_SNP [dm6]	C	G	3.571e^-4	0.983	INTERGENIC
2L	5978025	2L_5978025_SNP [dm3] 2L_5978025_SNP [dm6]	C	T	3.579e^-4	0.983	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	21538885	X_21538885_SNP [dm3] X_21667858_SNP [dm6]	C	A	3.582e^-4	0.983	INTERGENIC	transposable element FlyBase
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	3.583e^-4	0.983	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	3.584e^-4	0.983	INTRON Hnf4 & 1 other
2R	16547265	2R_16547265_SNP [dm3] 2R_20659760_SNP [dm6]	C	T	3.586e^-4	0.983	INTRON Lrt
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	3.589e^-4	0.983	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	18353698	3L_18353698_SNP [dm3] 3L_18360598_SNP [dm6]	G	C	3.592e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14335728	3L_14335728_SNP [dm3] 3L_14342628_SNP [dm6]	C	G	3.595e^-4	0.983	INTRON fz
2L	18159156	2L_18159156_INS [dm3] 2L_18159156_INS [dm6]	A	ACTTAAGTATTTTACTATTC...	3.596e^-4	0.983	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	3.597e^-4	0.983	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	7891199	3L_7891199_SNP [dm3] 3L_7898099_SNP [dm6]	A	G	3.598e^-4	0.983	SYNONYMOUS_CODING pbl
2R	7751483	2R_7751483_SNP [dm3] 2R_11863978_SNP [dm6]	G	C	3.599e^-4	0.983	UPSTREAM CG42531 & 1 other INTERGENIC
2R	12080581	2R_12080581_SNP [dm3] 2R_16193076_SNP [dm6]	A	C	3.603e^-4	0.983	UTR_3_PRIME clu DOWNSTREAM calypso	TF binding site mE1_TFBS_cad
3L	5428994	3L_5428994_DEL [dm3] 3L_5435894_DEL [dm6]	CTCAAT	C	3.604e^-4	0.983	UPSTREAM CG34391 INTRON CG34391
X	16691200	X_16691200_SNP [dm3] X_16797167_SNP [dm6]	C	T	3.616e^-4	0.983	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
X	4537361	X_4537361_SNP [dm3] X_4643328_SNP [dm6]	A	T	3.618e^-4	0.983	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	3.624e^-4	0.983	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	11766632	3L_11766632_SNP [dm3] 3L_11773532_SNP [dm6]	C	A	3.644e^-4	0.983	DOWNSTREAM mir-956 & 2 others INTERGENIC
2L	5419599	2L_5419599_DEL [dm3] 2L_5419599_DEL [dm6]	GG	G	3.645e^-4	0.983	INTERGENIC
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	3.652e^-4	0.983	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10302024	2R_10302024_SNP [dm3] 2R_14414519_SNP [dm6]	C	G	3.657e^-4	0.983	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12049488	2R_12049488_SNP [dm3] 2R_16161983_SNP [dm6]	A	C	3.658e^-4	0.983	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12467848	2L_12467848_SNP [dm3] 2L_12467848_SNP [dm6]	C	T	3.658e^-4	0.983	INTRON bun	TF binding site mE1_TFBS_kn
2L	21959468	2L_21959468_SNP [dm3] 2L_21959468_SNP [dm6]	A	G	3.673e^-4	0.983	DOWNSTREAM CR44804 & 1 other INTERGENIC
X	4587230	X_4587230_SNP [dm3] X_4693197_SNP [dm6]	A	T	3.681e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	4587238	X_4587238_DEL [dm3] X_4693205_DEL [dm6]	ATGATTAGCTTTA...	A	3.681e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	3.690e^-4	0.983	INTERGENIC
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	3.699e^-4	0.983	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	888409	3L_888409_SNP [dm3] 3L_888409_SNP [dm6]	A	G	3.707e^-4	0.983	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	4692765	2L_4692765_SNP [dm3] 2L_4692765_SNP [dm6]	A	G	3.713e^-4	0.983	INTERGENIC
X	13173679	X_13173679_SNP [dm3] X_13279646_SNP [dm6]	A	G	3.715e^-4	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	3.720e^-4	0.983	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
2R	8277585	2R_8277585_SNP [dm3] 2R_12390080_SNP [dm6]	C	A	3.722e^-4	0.983	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	9210575	3L_9210575_SNP [dm3] 3L_9217475_SNP [dm6]	T	C	3.722e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_bab1
X	7181683	X_7181683_SNP [dm3] X_7287650_SNP [dm6]	C	T	3.731e^-4	0.983	DOWNSTREAM unc-119 INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens mE1_TFBS_Ubx
2R	11604669	2R_11604669_SNP [dm3] 2R_15717164_SNP [dm6]	A	T	3.732e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	16514348	2R_16514348_SNP [dm3] 2R_20626843_SNP [dm6]	C	A	3.741e^-4	0.983	NON_SYNONYMOUS_CODING CG16742
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	3.743e^-4	0.983	INTRON CG13698
2L	9595710	2L_9595710_INS [dm3] 2L_9595710_INS [dm6]	G	GAAATGGAAAG...	3.746e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5872879	2L_5872879_INS [dm3] 2L_5872879_INS [dm6]	A	AAGTGGC	3.748e^-4	0.983	INTRON rau	TF binding site mE1_TFBS_sens
3L	1388951	3L_1388951_SNP [dm3] 3L_1388951_SNP [dm6]	A	G	3.767e^-4	0.983	INTRON Ptp61F
2R	17424293	2R_17424293_SNP [dm3] 2R_21536788_SNP [dm6]	G	A	3.768e^-4	0.983	START_GAINED CG30286 UTR_5_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6148846	2L_6148846_SNP [dm3] 2L_6148846_SNP [dm6]	T	G	3.783e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	3.784e^-4	0.983	DOWNSTREAM CG14089 INTRON CG14086
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	3.791e^-4	0.983	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3R	21477110	3R_21477110_SNP [dm3] 3R_25651388_SNP [dm6]	A	G	3.791e^-4	0.983	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
X	19975403	X_19975403_SNP [dm3] X_20081370_SNP [dm6]	G	T	3.794e^-4	0.983	INTERGENIC
2L	7447943	2L_7447943_SNP [dm3] 2L_7447943_SNP [dm6]	A	C	3.800e^-4	0.983	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
2L	12577690	2L_12577690_DEL [dm3] 2L_12577690_DEL [dm6]	AA	A	3.804e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13850978	2L_13850978_SNP [dm3] 2L_13850978_SNP [dm6]	G	A	3.806e^-4	0.983	DOWNSTREAM CG7968 INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA
2L	9562350	2L_9562350_SNP [dm3] 2L_9562350_SNP [dm6]	G	A	3.806e^-4	0.983	INTRON jp
2L	19929144	2L_19929144_SNP [dm3] 2L_19929144_SNP [dm6]	T	C	3.807e^-4	0.983	INTRON sick
2R	19193324	2R_19193324_SNP [dm3] 2R_23305801_SNP [dm6]	C	A	3.815e^-4	0.983	INTERGENIC
X	16108230	X_16108230_SNP [dm3] X_16214197_SNP [dm6]	T	C	3.820e^-4	0.983	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17042402	2R_17042402_SNP [dm3] 2R_21154897_SNP [dm6]	T	C	3.829e^-4	0.983	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	3.834e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14086572	3R_14086572_SNP [dm3] 3R_18260850_SNP [dm6]	T	C	3.835e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13745476	2R_13745476_SNP [dm3] 2R_17857971_SNP [dm6]	A	T	3.839e^-4	0.983	INTRON olf186-F
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	3.846e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	3.849e^-4	0.983	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	19629168	2R_19629168_SNP [dm3] 2R_23741645_SNP [dm6]	A	G	3.859e^-4	0.983	INTRON egl
3L	3008347	3L_3008347_SNP [dm3] 3L_3008347_SNP [dm6]	C	G	3.870e^-4	0.983	INTRON FMRFaR
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	3.873e^-4	0.983	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10307020	2R_10307020_SNP [dm3] 2R_14419515_SNP [dm6]	G	A	3.873e^-4	0.983	UPSTREAM CG17386 INTERGENIC
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	3.874e^-4	0.983	DOWNSTREAM CG3982 INTRON CG3967
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	3.876e^-4	0.983	UTR_5_PRIME CG5160
2R	13804706	2R_13804706_INS [dm3] 2R_17917201_INS [dm6]	G	GAG	3.877e^-4	0.983	INTRON Elk
2R	14452283	2R_14452283_SNP [dm3] 2R_18564778_SNP [dm6]	G	A	3.878e^-4	0.983	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14294525	3L_14294525_SNP [dm3] 3L_14301425_SNP [dm6]	G	A	3.883e^-4	0.983	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	3.894e^-4	0.983	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
2L	6461108	2L_6461108_SNP [dm3] 2L_6461108_SNP [dm6]	T	C	3.895e^-4	0.983	INTRON CG16947
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	3.896e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	12415253	2L_12415253_SNP [dm3] 2L_12415253_SNP [dm6]	G	A	3.898e^-4	0.983	INTRON vir-1
2L	14389610	2L_14389610_SNP [dm3] 2L_14389610_SNP [dm6]	A	G	3.904e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10071129	2R_10071129_SNP [dm3] 2R_14183624_SNP [dm6]	T	C	3.905e^-4	0.983	DOWNSTREAM cg INTERGENIC
2L	7447884	2L_7447884_SNP [dm3] 2L_7447884_SNP [dm6]	A	T	3.915e^-4	0.983	UTR_5_PRIME santa-maria INTRON santa-maria
2L	3470929	2L_3470929_SNP [dm3] 2L_3470929_SNP [dm6]	T	C	3.918e^-4	0.983	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	3.918e^-4	0.983	NON_SYNONYMOUS_CODING CG13618
2R	13535330	2R_13535330_SNP [dm3] 2R_17647825_SNP [dm6]	G	A	3.920e^-4	0.983	SYNONYMOUS_CODING CCHa1-R
3R	1615122	3R_1615122_INS [dm3] 3R_5789400_INS [dm6]	A	AT	3.929e^-4	0.983	UPSTREAM Rpn5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	3.930e^-4	0.983	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
X	16178110	X_16178110_SNP [dm3] X_16284077_SNP [dm6]	A	G	3.931e^-4	0.983	SYNONYMOUS_CODING eas UTR_3_PRIME eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	17048664	3L_17048664_SNP [dm3] 3L_17055564_SNP [dm6]	T	G	3.936e^-4	0.983	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	7612623	X_7612623_SNP [dm3] X_7718590_SNP [dm6]	C	G	3.938e^-4	0.983	UPSTREAM CG15478 INTERGENIC
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	3.946e^-4	0.983	INTRON dpr3
X	5365847	X_5365847_SNP [dm3] X_5471814_SNP [dm6]	A	T	3.948e^-4	0.983	INTRON SPR
2R	7428281	2R_7428281_SNP [dm3] 2R_11540776_SNP [dm6]	A	G	3.953e^-4	0.983	INTERGENIC
X	17430384	X_17430384_SNP [dm3] X_17536351_SNP [dm6]	G	A	3.957e^-4	0.983	INTRON CG43658
X	8172666	X_8172666_SNP [dm3] X_8278633_SNP [dm6]	A	G	3.957e^-4	0.983	UTR_3_PRIME nAChRalpha3
2L	16084190	2L_16084190_SNP [dm3] 2L_16084190_SNP [dm6]	T	C	3.960e^-4	0.983	INTERGENIC
2R	16555888	2R_16555888_DEL [dm3] 2R_20668383_DEL [dm6]	ATAAAACCTTTTACATTTAG...	A	3.968e^-4	0.983	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	12993252	3R_12993252_SNP [dm3] 3R_17167530_SNP [dm6]	T	G	3.973e^-4	0.983	INTRON Mur89F
2L	9556615	2L_9556615_SNP [dm3] 2L_9556615_SNP [dm6]	C	T	3.976e^-4	0.983	INTRON jp
2L	5428862	2L_5428862_SNP [dm3] 2L_5428862_SNP [dm6]	G	T	3.981e^-4	0.983	INTERGENIC
2L	5643718	2L_5643718_SNP [dm3] 2L_5643718_SNP [dm6]	G	A	3.993e^-4	0.983	INTRON CG31646	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15611578	2L_15611578_SNP [dm3] 2L_15611578_SNP [dm6]	G	A	3.993e^-4	0.983	SYNONYMOUS_CODING CG15255 DOWNSTREAM CR44865 & 1 other
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	4.009e^-4	0.983	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
3R	1615100	3R_1615100_SNP [dm3] 3R_5789378_SNP [dm6]	T	C	4.017e^-4	0.983	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	1615105	3R_1615105_SNP [dm3] 3R_5789383_SNP [dm6]	C	T	4.017e^-4	0.983	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	4.018e^-4	0.983	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	4.018e^-4	0.983	INTRON CG15465 & 1 other
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	4.035e^-4	0.983	UPSTREAM CG15865 INTRON r
3R	8434001	3R_8434001_SNP [dm3] 3R_12608279_SNP [dm6]	T	C	4.045e^-4	0.983	INTERGENIC
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	4.048e^-4	0.983	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
3L	17174848	3L_17174848_SNP [dm3] 3L_17181748_SNP [dm6]	C	T	4.048e^-4	0.983	INTRON Rbp6
2R	12069513	2R_12069513_SNP [dm3] 2R_16182008_SNP [dm6]	G	A	4.056e^-4	0.983	UTR_5_PRIME Lis-1	TF binding site mE1_TFBS_HSA
2L	19967553	2L_19967553_SNP [dm3] 2L_19967553_SNP [dm6]	A	G	4.062e^-4	0.983	INTRON Hf	TF binding site mE1_TFBS_cad
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	4.077e^-4	0.983	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	1490812	2R_1490812_SNP [dm3] 2R_5603307_SNP [dm6]	C	A	4.080e^-4	0.983	DOWNSTREAM Fis1 INTERGENIC
3L	7105140	3L_7105140_INS [dm3] 3L_7112040_INS [dm6]	A	AA	4.083e^-4	0.983	INTRON form3
2L	6238123	2L_6238123_SNP [dm3] 2L_6238123_SNP [dm6]	C	T	4.088e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	3008320	3L_3008320_SNP [dm3] 3L_3008320_SNP [dm6]	C	A	4.089e^-4	0.983	INTRON FMRFaR
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	4.100e^-4	0.983	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
X	4582275	X_4582275_SNP [dm3] X_4688242_SNP [dm6]	T	A	4.109e^-4	0.983	UTR_5_PRIME ctp INTRON ctp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	4.115e^-4	0.983	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2R	11530618	2R_11530618_DEL [dm3] 2R_15643113_DEL [dm6]	AATA	A	4.116e^-4	0.983	INTRON CG42524
X	7102590	X_7102590_SNP [dm3] X_7208557_SNP [dm6]	A	G	4.120e^-4	0.983	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2L	2767054	2L_2767054_SNP [dm3] 2L_2767054_SNP [dm6]	A	C	4.122e^-4	0.983	SYNONYMOUS_CODING aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4767559	2L_4767559_SNP [dm3] 2L_4767559_SNP [dm6]	C	T	4.124e^-4	0.983	INTRON CG15630
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	4.141e^-4	0.983	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	14087432	3R_14087432_SNP [dm3] 3R_18261710_SNP [dm6]	G	C	4.141e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4937780	3R_4937780_SNP [dm3] 3R_9112058_SNP [dm6]	G	A	4.146e^-4	0.983	INTRON pum
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	4.155e^-4	0.983	INTERGENIC
2L	12369027	2L_12369027_SNP [dm3] 2L_12369027_SNP [dm6]	A	C	4.174e^-4	0.983	UPSTREAM bru-2 INTRON bru-2
2L	18293821	2L_18293821_SNP [dm3] 2L_18293821_SNP [dm6]	G	A	4.175e^-4	0.983	DOWNSTREAM Sfp36F EXON CR43358
X	5221846	X_5221846_SNP [dm3] X_5327813_SNP [dm6]	A	G	4.190e^-4	0.983	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	4.224e^-4	0.983	INTRON Wnt6
X	14261298	X_14261298_SNP [dm3] X_14367265_SNP [dm6]	A	C	4.227e^-4	0.983	INTRON dpr8
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	4.227e^-4	0.983	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	4.228e^-4	0.983	INTRON CG2082
2R	10689672	2R_10689672_SNP [dm3] 2R_14802167_SNP [dm6]	C	G	4.228e^-4	0.983	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	4.230e^-4	0.983	DOWNSTREAM Bace INTRON Dh31
3R	3505945	3R_3505945_SNP [dm3] 3R_7680223_SNP [dm6]	C	T	4.242e^-4	0.983	INTRON Nlg1
2L	7010936	2L_7010936_SNP [dm3] 2L_7010936_SNP [dm6]	T	C	4.243e^-4	0.983	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	4.244e^-4	0.983	INTERGENIC
2R	9712246	2R_9712246_SNP [dm3] 2R_13824741_SNP [dm6]	C	T	4.245e^-4	0.983	UPSTREAM CG13339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2868383	3L_2868383_SNP [dm3] 3L_2868383_SNP [dm6]	A	C	4.246e^-4	0.983	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	16886512	2L_16886512_SNP [dm3] 2L_16886512_SNP [dm6]	A	T	4.247e^-4	0.983	DOWNSTREAM CG6115 & 2 others INTERGENIC
X	4584116	X_4584116_INS [dm3] X_4690083_INS [dm6]	A	AA	4.251e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17071692	X_17071692_SNP [dm3] X_17177659_SNP [dm6]	G	T	4.253e^-4	0.983	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
X	4583645	X_4583645_SNP [dm3] X_4689612_SNP [dm6]	A	G	4.258e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	4.259e^-4	0.983	DOWNSTREAM CG3982 INTRON CG3967
3L	16938413	3L_16938413_SNP [dm3] 3L_16945313_SNP [dm6]	G	A	4.261e^-4	0.983	INTRON Obp73a
3R	6430491	3R_6430491_SNP [dm3] 3R_10604769_SNP [dm6]	T	C	4.262e^-4	0.983	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16782558	2R_16782558_SNP [dm3] 2R_20895053_SNP [dm6]	G	A	4.267e^-4	0.983	INTRON otp	TF binding site BDTNP1_TFBS_da
3L	3007817	3L_3007817_SNP [dm3] 3L_3007817_SNP [dm6]	C	T	4.276e^-4	0.983	INTRON FMRFaR
2R	16514570	2R_16514570_SNP [dm3] 2R_20627065_SNP [dm6]	A	C	4.281e^-4	0.983	NON_SYNONYMOUS_CODING CG16742
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	4.287e^-4	0.983	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16129464	2L_16129464_SNP [dm3] 2L_16129464_SNP [dm6]	T	A	4.296e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5455480	2L_5455480_SNP [dm3] 2L_5455480_SNP [dm6]	T	A	4.297e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	4.305e^-4	0.983	INTRON cpo
3L	11094710	3L_11094710_SNP [dm3] 3L_11101610_SNP [dm6]	C	T	4.314e^-4	0.983	SYNONYMOUS_CODING Elo68beta DOWNSTREAM Elo68alpha
2L	5777545	2L_5777545_SNP [dm3] 2L_5777545_SNP [dm6]	C	T	4.316e^-4	0.983	INTRON CG9171	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	4.331e^-4	0.983	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8433693	3R_8433693_SNP [dm3] 3R_12607971_SNP [dm6]	G	A	4.331e^-4	0.983	INTERGENIC
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	4.334e^-4	0.983	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6500190	2L_6500190_SNP [dm3] 2L_6500190_SNP [dm6]	C	T	4.353e^-4	0.983	INTRON CG31637
3R	5306212	3R_5306212_SNP [dm3] 3R_9480490_SNP [dm6]	G	A	4.353e^-4	0.983	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	4.356e^-4	0.983	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	4.357e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	18079825	2L_18079825_SNP [dm3] 2L_18079825_SNP [dm6]	T	A	4.361e^-4	0.983	INTRON Arr1
X	19435576	X_19435576_SNP [dm3] X_19541543_SNP [dm6]	C	T	4.375e^-4	0.983	INTRON CG32532
2L	17607741	2L_17607741_SNP [dm3] 2L_17607741_SNP [dm6]	C	T	4.379e^-4	0.983	UPSTREAM CR44412 INTERGENIC
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	4.390e^-4	0.983	INTRON fz2	TF binding site mE1_TFBS_Trl
2R	17366653	2R_17366653_SNP [dm3] 2R_21479148_SNP [dm6]	T	C	4.394e^-4	0.983	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
X	17911850	X_17911850_SNP [dm3] X_18017817_SNP [dm6]	A	G	4.404e^-4	0.983	INTRON Sh
X	17256054	X_17256054_INS [dm3] X_17362021_INS [dm6]	T	TTT	4.404e^-4	0.983	INTERGENIC
3R	6489066	3R_6489066_SNP [dm3] 3R_10663344_SNP [dm6]	G	A	4.418e^-4	0.983	INTERGENIC
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	4.420e^-4	0.983	INTERGENIC
X	14461944	X_14461944_INS [dm3] X_14567911_INS [dm6]	T	TAT	4.420e^-4	0.983	INTERGENIC
X	6790498	X_6790498_SNP [dm3] X_6896465_SNP [dm6]	C	T	4.437e^-4	0.983	INTERGENIC
3R	6530439	3R_6530439_SNP [dm3] 3R_10704717_SNP [dm6]	A	T	4.450e^-4	0.983	SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467
2L	3784878	2L_3784878_INS [dm3] 2L_3784878_INS [dm6]	T	TT	4.465e^-4	0.983	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	4.472e^-4	0.983	INTRON kek3
X	4587157	X_4587157_SNP [dm3] X_4693124_SNP [dm6]	G	T	4.472e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	2326700	X_2326700_SNP [dm3] X_2432667_SNP [dm6]	T	C	4.473e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	22019690	X_22019690_INS [dm3] X_22617854_INS [dm6]	T	TAGA	4.476e^-4	0.983	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	888430	3L_888430_SNP [dm3] 3L_888430_SNP [dm6]	G	A	4.479e^-4	0.983	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	7435867	2L_7435867_SNP [dm3] 2L_7435867_SNP [dm6]	T	C	4.490e^-4	0.983	INTERGENIC
X	5067570	X_5067570_SNP [dm3] X_5173537_SNP [dm6]	G	A	4.496e^-4	0.983	INTRON rg & 1 other
X	17076670	X_17076670_SNP [dm3] X_17182637_SNP [dm6]	G	C	4.505e^-4	0.983	DOWNSTREAM CR44026 INTRON baz
2L	6497256	2L_6497256_SNP [dm3] 2L_6497256_SNP [dm6]	T	C	4.506e^-4	0.983	SYNONYMOUS_CODING CG9550 DOWNSTREAM CG31638
2R	14499147	2R_14499147_SNP [dm3] 2R_18611642_SNP [dm6]	C	T	4.511e^-4	0.983	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	7887144	X_7887144_SNP [dm3] X_7993111_SNP [dm6]	C	T	4.517e^-4	0.983	INTERGENIC
2L	18091938	2L_18091938_SNP [dm3] 2L_18091938_SNP [dm6]	G	C	4.520e^-4	0.983	NON_SYNONYMOUS_CODING CG15153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6494856	2L_6494856_SNP [dm3] 2L_6494856_SNP [dm6]	A	G	4.527e^-4	0.983	UPSTREAM CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	4.529e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8843013	3R_8843013_SNP [dm3] 3R_13017291_SNP [dm6]	G	A	4.533e^-4	0.983	UTR_5_PRIME CtBP INTRON CtBP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16726936	2R_16726936_SNP [dm3] 2R_20839431_SNP [dm6]	T	C	4.538e^-4	0.983	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6953271	2L_6953271_SNP [dm3] 2L_6953271_SNP [dm6]	T	C	4.542e^-4	0.983	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	4.543e^-4	0.983	INTRON Doa
X	9223510	X_9223510_SNP [dm3] X_9329477_SNP [dm6]	G	A	4.546e^-4	0.983	SYNONYMOUS_CODING CG34450 INTRON CG34449
2L	9991545	2L_9991545_SNP [dm3] 2L_9991545_SNP [dm6]	T	A	4.549e^-4	0.983	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17116406	X_17116406_SNP [dm3] X_17222373_SNP [dm6]	G	T	4.554e^-4	0.983	SYNONYMOUS_CODING CG5172 DOWNSTREAM CG34327 INTRON CG5172
3L	3598903	3L_3598903_SNP [dm3] 3L_3598903_SNP [dm6]	A	T	4.563e^-4	0.983	INTRON Eip63E
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	4.564e^-4	0.983	INTRON Duox
3L	9278606	3L_9278606_SNP [dm3] 3L_9285506_SNP [dm6]	C	A	4.568e^-4	0.983	NON_SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3L	18197253	3L_18197253_SNP [dm3] 3L_18204153_SNP [dm6]	C	G	4.574e^-4	0.983	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	4.574e^-4	0.983	INTRON spir & 1 other
2R	11479540	2R_11479540_SNP [dm3] 2R_15592035_SNP [dm6]	C	T	4.579e^-4	0.983	INTERGENIC
2L	17142542	2L_17142542_SNP [dm3] 2L_17142542_SNP [dm6]	C	T	4.580e^-4	0.983	INTRON beat-IIIa & 1 other
2L	14659830	2L_14659830_SNP [dm3] 2L_14659830_SNP [dm6]	C	T	4.585e^-4	0.983	INTRON osp
2R	16782351	2R_16782351_INS [dm3] 2R_20894846_INS [dm6]	T	TGT	4.585e^-4	0.983	INTRON otp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	4.588e^-4	0.983	INTRON bs & 1 other
3R	14086232	3R_14086232_SNP [dm3] 3R_18260510_SNP [dm6]	T	C	4.591e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	4.610e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	6462293	2L_6462293_SNP [dm3] 2L_6462293_SNP [dm6]	A	C	4.613e^-4	0.983	INTRON CG16947
2L	17570414	2L_17570414_SNP [dm3] 2L_17570414_SNP [dm6]	T	G	4.642e^-4	0.983	INTERGENIC
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	4.645e^-4	0.983	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	4.650e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	7891365	3L_7891365_DEL [dm3] 3L_7898265_DEL [dm6]	TGAAAATA	T	4.669e^-4	0.983	INTRON pbl
X	13172962	X_13172962_INS [dm3] X_13278929_INS [dm6]	T	TAT	4.670e^-4	0.983	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	2410132	2R_2410132_SNP [dm3] 2R_6522627_SNP [dm6]	C	T	4.671e^-4	0.983	INTRON jing
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	4.673e^-4	0.983	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
2R	12069347	2R_12069347_SNP [dm3] 2R_16181842_SNP [dm6]	T	C	4.676e^-4	0.983	INTRON Lis-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6073978	2L_6073978_SNP [dm3] 2L_6073978_SNP [dm6]	C	A	4.680e^-4	0.983	DOWNSTREAM CR43801 & 1 other INTERGENIC
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	4.684e^-4	0.983	INTERGENIC
2R	7814430	2R_7814430_SNP [dm3] 2R_11926925_SNP [dm6]	T	C	4.687e^-4	0.983	INTERGENIC
2L	17142432	2L_17142432_SNP [dm3] 2L_17142432_SNP [dm6]	T	C	4.689e^-4	0.983	INTRON beat-IIIa & 1 other
2R	7398509	2R_7398509_SNP [dm3] 2R_11511004_SNP [dm6]	T	C	4.699e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13035336	X_13035336_SNP [dm3] X_13141303_SNP [dm6]	G	A	4.707e^-4	0.983	INTRON CG32645
2R	10528512	2R_10528512_SNP [dm3] 2R_14641007_SNP [dm6]	T	G	4.710e^-4	0.983	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3005714	3L_3005714_SNP [dm3] 3L_3005714_SNP [dm6]	G	T	4.711e^-4	0.983	INTRON FMRFaR
2R	11594100	2R_11594100_SNP [dm3] 2R_15706595_SNP [dm6]	G	A	4.720e^-4	0.983	INTERGENIC
3L	14016369	3L_14016369_SNP [dm3] 3L_14023269_SNP [dm6]	A	G	4.722e^-4	0.983	SYNONYMOUS_CODING ptip
2L	9556463	2L_9556463_SNP [dm3] 2L_9556463_SNP [dm6]	T	C	4.730e^-4	0.983	INTRON jp
X	22041882	X_22041882_SNP [dm3] X_22640046_SNP [dm6]	A	C	4.732e^-4	0.983	INTERGENIC	transposable element FlyBase
2L	12475436	2L_12475436_SNP [dm3] 2L_12475436_SNP [dm6]	C	T	4.744e^-4	0.983	INTRON bun
3L	11854273	3L_11854273_SNP [dm3] 3L_11861173_SNP [dm6]	C	T	4.744e^-4	0.983	INTRON CG44837
2L	2689293	2L_2689293_SNP [dm3] 2L_2689293_SNP [dm6]	G	A	4.746e^-4	0.983	INTRON CG31690
2L	16573588	2L_16573588_SNP [dm3] 2L_16573588_SNP [dm6]	G	T	4.750e^-4	0.983	INTRON CG42389
3R	25427014	3R_25427014_SNP [dm3] 3R_29601292_SNP [dm6]	A	G	4.758e^-4	0.983	UPSTREAM CG7568 INTRON alph
2L	9594640	2L_9594640_SNP [dm3] 2L_9594640_SNP [dm6]	C	A	4.760e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	4.766e^-4	0.983	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
X	20867430	X_20867430_SNP [dm3] X_20996403_SNP [dm6]	C	T	4.771e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18293779	2L_18293779_DEL [dm3] 2L_18293779_DEL [dm6]	CTAC	C	4.772e^-4	0.983	DOWNSTREAM Sfp36F EXON CR43358
X	16758119	X_16758119_SNP [dm3] X_16864086_SNP [dm6]	A	G	4.773e^-4	0.983	INTRON CG13003
3L	7988490	3L_7988490_SNP [dm3] 3L_7995390_SNP [dm6]	T	A	4.779e^-4	0.983	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21147043	3R_21147043_SNP [dm3] 3R_25321321_SNP [dm6]	T	A	4.799e^-4	0.983	NON_SYNONYMOUS_CODING CG10562
X	4582013	X_4582013_SNP [dm3] X_4687980_SNP [dm6]	C	T	4.799e^-4	0.983	START_GAINED ctp UTR_5_PRIME ctp UPSTREAM ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	15623446	2L_15623446_SNP [dm3] 2L_15623446_SNP [dm6]	T	A	4.802e^-4	0.983	NON_SYNONYMOUS_CODING Or35a
3L	9688872	3L_9688872_SNP [dm3] 3L_9695772_SNP [dm6]	C	A	4.809e^-4	0.983	UPSTREAM CG6767 DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7804211	3L_7804211_SNP [dm3] 3L_7811111_SNP [dm6]	A	G	4.814e^-4	0.983	DOWNSTREAM Pdp1 INTERGENIC
X	16758456	X_16758456_SNP [dm3] X_16864423_SNP [dm6]	T	C	4.815e^-4	0.983	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	18967600	2R_18967600_SNP [dm3] 2R_23080077_SNP [dm6]	T	A	4.817e^-4	0.983	UPSTREAM Gr59a & 1 other INTERGENIC
2R	4254347	2R_4254347_DEL [dm3] 2R_8366842_DEL [dm6]	CCTT	C	4.817e^-4	0.983	UPSTREAM boly DOWNSTREAM CG18449 INTRON pdm3	transposable element FlyBase
2R	3561534	2R_3561534_SNP [dm3] 2R_7674029_SNP [dm6]	C	T	4.819e^-4	0.983	UPSTREAM CG12107 INTRON mRpL52	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2401354	3L_2401354_SNP [dm3] 3L_2401354_SNP [dm6]	G	C	4.839e^-4	0.983	INTRON CG45186
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	4.840e^-4	0.983	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9965747	2L_9965747_SNP [dm3] 2L_9965747_SNP [dm6]	C	T	4.841e^-4	0.983	INTRON Dref
2L	9561194	2L_9561194_DEL [dm3] 2L_9561194_DEL [dm6]	TCGCAAAGT	T	4.857e^-4	0.983	UPSTREAM jp INTRON jp
2L	9561223	2L_9561223_SNP [dm3] 2L_9561223_SNP [dm6]	C	A	4.857e^-4	0.983	UPSTREAM jp INTRON jp
X	4584394	X_4584394_SNP [dm3] X_4690361_SNP [dm6]	A	T	4.862e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	4.866e^-4	0.983	INTRON trol
X	4168784	X_4168784_SNP [dm3] X_4274751_SNP [dm6]	C	T	4.870e^-4	0.983	DOWNSTREAM CR45483 INTERGENIC
2L	2689270	2L_2689270_SNP [dm3] 2L_2689270_SNP [dm6]	A	G	4.871e^-4	0.983	INTRON CG31690
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	4.874e^-4	0.983	INTRON hppy	TF binding site mE1_TFBS_inv
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	4.877e^-4	0.983	INTRON Atf3
3L	3007581	3L_3007581_SNP [dm3] 3L_3007581_SNP [dm6]	A	G	4.881e^-4	0.983	INTRON FMRFaR
X	16758029	X_16758029_SNP [dm3] X_16863996_SNP [dm6]	C	T	4.887e^-4	0.983	INTRON CG13003
2R	7428259	2R_7428259_SNP [dm3] 2R_11540754_SNP [dm6]	G	T	4.901e^-4	0.983	INTERGENIC
3R	15801238	3R_15801238_SNP [dm3] 3R_19975516_SNP [dm6]	T	C	4.902e^-4	0.983	INTRON Hs6st & 1 other
3R	15801243	3R_15801243_SNP [dm3] 3R_19975521_SNP [dm6]	T	C	4.902e^-4	0.983	INTRON Hs6st & 1 other
3R	25762240	3R_25762240_SNP [dm3] 3R_29936518_SNP [dm6]	G	A	4.915e^-4	0.983	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25765124	3R_25765124_SNP [dm3] 3R_29939402_SNP [dm6]	T	C	4.923e^-4	0.983	SYNONYMOUS_CODING CG15523
X	16428015	X_16428015_SNP [dm3] X_16533982_SNP [dm6]	T	A	4.935e^-4	0.983	UPSTREAM para INTERGENIC
3R	6362772	3R_6362772_SNP [dm3] 3R_10537050_SNP [dm6]	C	G	4.939e^-4	0.983	INTRON hth	TF binding site BDTNP1_TFBS_dl
2L	9561128	2L_9561128_SNP [dm3] 2L_9561128_SNP [dm6]	T	C	4.945e^-4	0.983	UPSTREAM jp INTRON jp
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	4.947e^-4	0.983	INTERGENIC
X	16691401	X_16691401_SNP [dm3] X_16797368_SNP [dm6]	G	A	4.950e^-4	0.983	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
2L	902061	2L_902061_SNP [dm3] 2L_902061_SNP [dm6]	G	A	4.951e^-4	0.983	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6503233	2L_6503233_SNP [dm3] 2L_6503233_SNP [dm6]	A	T	4.958e^-4	0.983	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	4.963e^-4	0.983	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11719262	2R_11719262_SNP [dm3] 2R_15831757_SNP [dm6]	C	T	4.963e^-4	0.983	INTRON tun & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3L	9685859	3L_9685859_SNP [dm3] 3L_9692759_SNP [dm6]	T	C	4.966e^-4	0.983	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	10255162	2R_10255162_SNP [dm3] 2R_14367657_SNP [dm6]	A	G	4.971e^-4	0.983	UPSTREAM CG34443 DOWNSTREAM CG34184 INTRON CG34442
2L	6237862	2L_6237862_SNP [dm3] 2L_6237862_SNP [dm6]	G	A	4.972e^-4	0.983	INTERGENIC
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	4.978e^-4	0.983	INTRON baz
2L	3855038	2L_3855038_SNP [dm3] 2L_3855038_SNP [dm6]	A	C	4.984e^-4	0.983	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6458684	2L_6458684_SNP [dm3] 2L_6458684_SNP [dm6]	T	A	4.987e^-4	0.983	UTR_3_PRIME frj DOWNSTREAM CG16947
3R	18532199	3R_18532199_SNP [dm3] 3R_22706477_SNP [dm6]	C	A	4.992e^-4	0.983	SYNONYMOUS_CODING CG13842
2L	7437952	2L_7437952_SNP [dm3] 2L_7437952_SNP [dm6]	A	G	4.996e^-4	0.983	INTRON CG5973
X	3522536	X_3522536_SNP [dm3] X_3628503_SNP [dm6]	C	A	4.997e^-4	0.983	INTRON AstA-R1
3L	16874376	3L_16874376_SNP [dm3] 3L_16881276_SNP [dm6]	T	C	4.997e^-4	0.983	INTRON Lmpt
2R	7404313	2R_7404313_SNP [dm3] 2R_11516808_SNP [dm6]	T	C	4.998e^-4	0.983	INTERGENIC
3L	14017397	3L_14017397_SNP [dm3] 3L_14024297_SNP [dm6]	C	T	5.000e^-4	0.983	SYNONYMOUS_CODING ptip
3R	14105661	3R_14105661_SNP [dm3] 3R_18279939_SNP [dm6]	A	T	5.006e^-4	0.983	UPSTREAM CG7142 INTRON eIF-1A
3R	3506270	3R_3506270_SNP [dm3] 3R_7680548_SNP [dm6]	T	C	5.009e^-4	0.983	INTRON Nlg1
2L	9562235	2L_9562235_SNP [dm3] 2L_9562235_SNP [dm6]	A	T	5.019e^-4	0.983	INTRON jp
X	4583641	X_4583641_DEL [dm3] X_4689608_DEL [dm6]	TT	T	5.029e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4416371	3L_4416371_SNP [dm3] 3L_4416371_SNP [dm6]	G	A	5.042e^-4	0.983	INTRON DOR
3L	6463109	3L_6463109_SNP [dm3] 3L_6470009_SNP [dm6]	A	G	5.048e^-4	0.983	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3R	13263539	3R_13263539_DEL [dm3] 3R_17437817_DEL [dm6]	TT	T	5.049e^-4	0.983	INTRON CG5873
3R	17004124	3R_17004124_SNP [dm3] 3R_21178402_SNP [dm6]	A	G	5.050e^-4	0.983	SPLICE_SITE_REGION SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	5.055e^-4	0.983	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11496722	2L_11496722_SNP [dm3] 2L_11496722_SNP [dm6]	C	T	5.062e^-4	0.983	DOWNSTREAM CG6488 INTERGENIC
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	5.067e^-4	0.983	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	20251195	2R_20251195_SNP [dm3] 2R_24363672_SNP [dm6]	T	C	5.067e^-4	0.983	INTRON bs & 1 other
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	5.074e^-4	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10197395	2L_10197395_SNP [dm3] 2L_10197395_SNP [dm6]	A	G	5.080e^-4	0.983	INTRON Sur	regulatory region REDfly_CRMs
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	5.086e^-4	0.983	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3627541	X_3627541_SNP [dm3] X_3733508_SNP [dm6]	G	A	5.089e^-4	0.983	INTRON tlk	TF binding site mE1_TFBS_HSA
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	5.090e^-4	0.983	UPSTREAM CG8012 INTERGENIC
3L	18197270	3L_18197270_SNP [dm3] 3L_18204170_SNP [dm6]	T	A	5.094e^-4	0.983	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7902125	2R_7902125_SNP [dm3] 2R_12014620_SNP [dm6]	G	T	5.094e^-4	0.983	UPSTREAM CR44306 INTRON otk
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	5.108e^-4	0.983	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3L	18844566	3L_18844566_SNP [dm3] 3L_18851466_SNP [dm6]	C	T	5.126e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26004848	3R_26004848_SNP [dm3] 3R_30179126_SNP [dm6]	G	A	5.126e^-4	0.983	NON_SYNONYMOUS_CODING CG15530	TF binding site mE1_TFBS_chinmo
X	17911891	X_17911891_SNP [dm3] X_18017858_SNP [dm6]	A	G	5.129e^-4	0.983	INTRON Sh
X	10511435	X_10511435_SNP [dm3] X_10617402_SNP [dm6]	C	T	5.131e^-4	0.983	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19399978	3R_19399978_SNP [dm3] 3R_23574256_SNP [dm6]	G	T	5.136e^-4	0.983	INTRON beat-IV	TF binding site mE1_TFBS_chinmo
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	5.139e^-4	0.983	NON_SYNONYMOUS_CODING bbg
X	1148273	X_1148273_SNP [dm3] X_1254240_SNP [dm6]	T	C	5.141e^-4	0.983	INTRON Atf3
2L	13868072	2L_13868072_SNP [dm3] 2L_13868072_SNP [dm6]	T	C	5.144e^-4	0.983	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	5.146e^-4	0.983	INTRON CG32103
2R	9638150	2R_9638150_SNP [dm3] 2R_13750645_SNP [dm6]	G	A	5.148e^-4	0.983	INTERGENIC
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	5.151e^-4	0.983	UPSTREAM CG1722 INTRON CG32521
2R	7792376	2R_7792376_SNP [dm3] 2R_11904871_SNP [dm6]	C	A	5.152e^-4	0.983	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
3R	10745034	3R_10745034_SNP [dm3] 3R_14919312_SNP [dm6]	A	G	5.155e^-4	0.983	SYNONYMOUS_CODING Sdr
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	5.164e^-4	0.983	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9706703	2L_9706703_SNP [dm3] 2L_9706703_SNP [dm6]	G	T	5.166e^-4	0.983	SYNONYMOUS_CODING pelo UPSTREAM CG31710	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25980401	3R_25980401_INS [dm3] 3R_30154679_INS [dm6]	T	TT	5.169e^-4	0.983	INTRON CG11498	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
3L	9749386	3L_9749386_SNP [dm3] 3L_9756286_SNP [dm6]	G	A	5.171e^-4	0.983	INTRON CG42268
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	5.172e^-4	0.983	INTRON nAChRalpha6
2R	8278092	2R_8278092_SNP [dm3] 2R_12390587_SNP [dm6]	T	C	5.174e^-4	0.983	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC
X	17939905	X_17939905_SNP [dm3] X_18045872_SNP [dm6]	A	G	5.179e^-4	0.983	SYNONYMOUS_CODING CG15373 INTRON Sh
3L	19244186	3L_19244186_SNP [dm3] 3L_19251086_SNP [dm6]	C	T	5.181e^-4	0.983	INTERGENIC
2L	7437034	2L_7437034_SNP [dm3] 2L_7437034_SNP [dm6]	G	T	5.181e^-4	0.983	UPSTREAM CG5973 INTERGENIC
3L	3029583	3L_3029583_SNP [dm3] 3L_3029583_SNP [dm6]	C	G	5.190e^-4	0.983	INTERGENIC
2R	11479133	2R_11479133_SNP [dm3] 2R_15591628_SNP [dm6]	C	G	5.192e^-4	0.983	INTERGENIC
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	5.198e^-4	0.983	INTERGENIC
X	9222879	X_9222879_SNP [dm3] X_9328846_SNP [dm6]	G	A	5.219e^-4	0.983	DOWNSTREAM CG34450 INTRON CG34449
2L	16371165	2L_16371165_SNP [dm3] 2L_16371165_SNP [dm6]	T	A	5.226e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
3L	14016301	3L_14016301_SNP [dm3] 3L_14023201_SNP [dm6]	T	C	5.229e^-4	0.983	SYNONYMOUS_CODING ptip
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	5.230e^-4	0.983	INTRON beat-VII
3L	7384175	3L_7384175_SNP [dm3] 3L_7391075_SNP [dm6]	C	T	5.238e^-4	0.983	START_GAINED CG8563 UTR_5_PRIME CG8563 UPSTREAM CG8563
X	15482560	X_15482560_SNP [dm3] X_15588527_SNP [dm6]	C	T	5.240e^-4	0.983	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3008225	3L_3008225_SNP [dm3] 3L_3008225_SNP [dm6]	G	A	5.247e^-4	0.983	INTRON FMRFaR
2R	1312975	2R_1312975_SNP [dm3] 2R_5425470_SNP [dm6]	A	C	5.256e^-4	0.983	INTRON laccase2	transposable element FlyBase
X	2326589	X_2326589_SNP [dm3] X_2432556_SNP [dm6]	G	C	5.257e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	3009006	3L_3009006_SNP [dm3] 3L_3009006_SNP [dm6]	C	T	5.269e^-4	0.983	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11348360	3L_11348360_SNP [dm3] 3L_11355260_SNP [dm6]	A	G	5.281e^-4	0.983	INTERGENIC
2R	17963318	2R_17963318_SNP [dm3] 2R_22075813_SNP [dm6]	A	T	5.281e^-4	0.983	UPSTREAM GlcT-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14417395	2L_14417395_SNP [dm3] 2L_14417395_SNP [dm6]	T	C	5.281e^-4	0.983	UPSTREAM Pburs INTERGENIC
3R	25986697	3R_25986697_SNP [dm3] 3R_30160975_SNP [dm6]	A	G	5.282e^-4	0.983	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	5059880	X_5059880_SNP [dm3] X_5165847_SNP [dm6]	A	C	5.284e^-4	0.983	INTRON rg & 1 other
2L	13845685	2L_13845685_SNP [dm3] 2L_13845685_SNP [dm6]	T	A	5.289e^-4	0.983	UPSTREAM CG8997 INTRON CenG1A
3L	922601	3L_922601_SNP [dm3] 3L_922601_SNP [dm6]	C	T	5.294e^-4	0.983	INTRON Glut1
X	4584320	X_4584320_DEL [dm3] X_4690287_DEL [dm6]	TAAAG	A	5.299e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	5.300e^-4	0.983	INTERGENIC
2L	9564272	2L_9564272_SNP [dm3] 2L_9564272_SNP [dm6]	G	A	5.302e^-4	0.983	INTRON jp
2R	13804692	2R_13804692_SNP [dm3] 2R_17917187_SNP [dm6]	T	G	5.305e^-4	0.983	INTRON Elk
X	11115274	X_11115274_SNP [dm3] X_11221241_SNP [dm6]	C	T	5.316e^-4	0.983	UTR_3_PRIME CG44422
2L	18293786	2L_18293786_SNP [dm3] 2L_18293786_SNP [dm6]	C	T	5.319e^-4	0.983	DOWNSTREAM Sfp36F EXON CR43358
2L	18293815	2L_18293815_SNP [dm3] 2L_18293815_SNP [dm6]	A	G	5.319e^-4	0.983	DOWNSTREAM Sfp36F EXON CR43358
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	5.327e^-4	0.983	INTRON CG32206
X	4584429	X_4584429_SNP [dm3] X_4690396_SNP [dm6]	T	G	5.332e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	599421	2L_599421_SNP [dm3] 2L_599421_SNP [dm6]	T	C	5.333e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	18197196	3L_18197196_SNP [dm3] 3L_18204096_SNP [dm6]	G	A	5.356e^-4	0.983	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	4564392	X_4564392_SNP [dm3] X_4670359_SNP [dm6]	G	A	5.358e^-4	0.983	INTRON rap
3R	22541995	3R_22541995_SNP [dm3] 3R_26716273_SNP [dm6]	T	A	5.364e^-4	0.983	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	21903844	2L_21903844_SNP [dm3] 2L_21903844_SNP [dm6]	C	T	5.373e^-4	0.983	DOWNSTREAM CG1421 INTERGENIC
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	5.381e^-4	0.983	UTR_3_PRIME CG42741 INTRON twi
3L	9525707	3L_9525707_SNP [dm3] 3L_9532607_SNP [dm6]	A	C	5.383e^-4	0.983	INTERGENIC
2R	4395559	2R_4395559_SNP [dm3] 2R_8508054_SNP [dm6]	C	A	5.383e^-4	0.983	INTRON mtt
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	5.386e^-4	0.983	UTR_3_PRIME CG17839
3L	708118	3L_708118_SNP [dm3] 3L_708118_SNP [dm6]	C	A	5.388e^-4	0.983	UTR_5_PRIME CG13895 DOWNSTREAM CkIIalpha-i3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	5543816	2L_5543816_SNP [dm3] 2L_5543816_SNP [dm6]	C	T	5.395e^-4	0.983	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	5.399e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11530566	2R_11530566_SNP [dm3] 2R_15643061_SNP [dm6]	T	C	5.412e^-4	0.983	INTRON CG42524
X	14459846	X_14459846_SNP [dm3] X_14565813_SNP [dm6]	T	C	5.414e^-4	0.983	INTERGENIC
2R	4281473	2R_4281473_SNP [dm3] 2R_8393968_SNP [dm6]	C	A	5.420e^-4	0.983	INTRON pdm3
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	5.442e^-4	0.983	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	17184878	2L_17184878_SNP [dm3] 2L_17184878_SNP [dm6]	G	A	5.449e^-4	0.983	INTERGENIC
2L	17144253	2L_17144253_SNP [dm3] 2L_17144253_SNP [dm6]	A	G	5.455e^-4	0.983	INTRON beat-IIIa & 1 other
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	5.464e^-4	0.983	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13870930	3L_13870930_SNP [dm3] 3L_13877830_SNP [dm6]	G	C	5.471e^-4	0.983	INTRON dysc
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	5.474e^-4	0.983	INTRON fas
2L	706021	2L_706021_SNP [dm3] 2L_706021_SNP [dm6]	G	C	5.474e^-4	0.983	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10035790	3R_10035790_SNP [dm3] 3R_14210068_SNP [dm6]	A	C	5.482e^-4	0.983	INTRON Dop1R1
2L	9562873	2L_9562873_SNP [dm3] 2L_9562873_SNP [dm6]	T	A	5.491e^-4	0.983	INTRON jp
3L	11698691	3L_11698691_SNP [dm3] 3L_11705591_SNP [dm6]	T	G	5.497e^-4	0.983	INTRON CG11658
2R	4271319	2R_4271319_SNP [dm3] 2R_8383814_SNP [dm6]	G	A	5.504e^-4	0.983	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10266528	3L_10266528_SNP [dm3] 3L_10273428_SNP [dm6]	G	A	5.511e^-4	0.983	SYNONYMOUS_CODING Or67d
X	3222410	X_3222410_SNP [dm3] X_3328377_SNP [dm6]	G	C	5.515e^-4	0.983	INTRON CR44886 & 1 other
3R	18526799	3R_18526799_SNP [dm3] 3R_22701077_SNP [dm6]	T	A	5.525e^-4	0.983	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
3R	18526802	3R_18526802_SNP [dm3] 3R_22701080_SNP [dm6]	T	A	5.525e^-4	0.983	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	5.532e^-4	0.983	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	5.534e^-4	0.983	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11479202	2R_11479202_SNP [dm3] 2R_15591697_SNP [dm6]	C	A	5.546e^-4	0.983	INTERGENIC
3L	17051681	3L_17051681_SNP [dm3] 3L_17058581_SNP [dm6]	G	T	5.551e^-4	0.983	DOWNSTREAM Rbp6 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	20320274	2R_20320274_SNP [dm3] 2R_24432751_SNP [dm6]	G	A	5.552e^-4	0.983	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	697292	3L_697292_SNP [dm3] 3L_697292_SNP [dm6]	G	A	5.558e^-4	0.983	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12896221	2L_12896221_SNP [dm3] 2L_12896221_SNP [dm6]	A	G	5.560e^-4	0.983	INTERGENIC
2L	12896396	2L_12896396_SNP [dm3] 2L_12896396_SNP [dm6]	C	A	5.560e^-4	0.983	INTERGENIC
X	4583793	X_4583793_SNP [dm3] X_4689760_SNP [dm6]	A	T	5.564e^-4	0.983	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	5.572e^-4	0.983	INTRON CG3009
3R	24708894	3R_24708894_SNP [dm3] 3R_28883172_SNP [dm6]	A	T	5.573e^-4	0.983	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
2L	2061137	2L_2061137_SNP [dm3] 2L_2061137_SNP [dm6]	G	T	5.575e^-4	0.983	INTRON dpr3
2R	20320271	2R_20320271_SNP [dm3] 2R_24432748_SNP [dm6]	A	C	5.588e^-4	0.983	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6870684	3R_6870684_SNP [dm3] 3R_11044962_SNP [dm6]	G	A	5.590e^-4	0.983	INTRON CG34114
2R	11530595	2R_11530595_SNP [dm3] 2R_15643090_SNP [dm6]	T	A	5.591e^-4	0.983	INTRON CG42524
2L	7694673	2L_7694673_SNP [dm3] 2L_7694673_SNP [dm6]	C	T	5.593e^-4	0.983	SYNONYMOUS_CODING Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10066676	2R_10066676_SNP [dm3] 2R_14179171_SNP [dm6]	G	T	5.593e^-4	0.983	SYNONYMOUS_CODING cg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1617877	3R_1617877_SNP [dm3] 3R_5792155_SNP [dm6]	G	A	5.599e^-4	0.983	SYNONYMOUS_CODING CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
X	8172656	X_8172656_SNP [dm3] X_8278623_SNP [dm6]	A	C	5.599e^-4	0.983	UTR_3_PRIME nAChRalpha3
X	8172657	X_8172657_SNP [dm3] X_8278624_SNP [dm6]	A	G	5.599e^-4	0.983	UTR_3_PRIME nAChRalpha3
2R	15899966	2R_15899966_DEL [dm3] 2R_20012461_DEL [dm6]	TGG	T	5.599e^-4	0.983	INTERGENIC	TF binding site mE1_TFBS_run
2R	15769112	2R_15769112_DEL [dm3] 2R_19881607_DEL [dm6]	TTT	T	5.606e^-4	0.983	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17709579	2R_17709579_SNP [dm3] 2R_21822074_SNP [dm6]	T	A	5.612e^-4	0.983	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17709606	2R_17709606_SNP [dm3] 2R_21822101_SNP [dm6]	C	A	5.612e^-4	0.983	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5663357	X_5663357_DEL [dm3] X_5769324_DEL [dm6]	AAAGT	A	5.616e^-4	0.983	INTRON CG42699 & 1 other
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	5.617e^-4	0.983	INTRON kel
X	10513554	X_10513554_SNP [dm3] X_10619521_SNP [dm6]	G	T	5.618e^-4	0.983	INTRON CG43347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9607935	X_9607935_SNP [dm3] X_9713902_SNP [dm6]	A	G	5.623e^-4	0.983	INTERGENIC
2L	18175546	2L_18175546_SNP [dm3] 2L_18175546_SNP [dm6]	T	C	5.626e^-4	0.983	INTRON CG42750
X	3601739	X_3601739_SNP [dm3] X_3707706_SNP [dm6]	G	T	5.633e^-4	0.983	INTRON Rala
2R	9590131	2R_9590131_SNP [dm3] 2R_13702626_SNP [dm6]	A	C	5.634e^-4	0.983	INTRON fas
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	5.638e^-4	0.983	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	5.638e^-4	0.983	INTRON CG9747
3L	692656	3L_692656_SNP [dm3] 3L_692656_SNP [dm6]	T	G	5.638e^-4	0.983	DOWNSTREAM RabX6 & 1 other INTRON Vti1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	5.642e^-4	0.983	DOWNSTREAM CG14017 INTRON GluRIIA
X	14460424	X_14460424_SNP [dm3] X_14566391_SNP [dm6]	T	A	5.644e^-4	0.983	INTERGENIC
2L	14055419	2L_14055419_SNP [dm3] 2L_14055419_SNP [dm6]	A	C	5.650e^-4	0.983	INTRON nAChRalpha5
2L	6045128	2L_6045128_SNP [dm3] 2L_6045128_SNP [dm6]	G	A	5.652e^-4	0.983	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3L	13319209	3L_13319209_SNP [dm3] 3L_13326109_SNP [dm6]	C	T	5.669e^-4	0.983	INTERGENIC
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	5.670e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18302517	2L_18302517_SNP [dm3] 2L_18302517_SNP [dm6]	G	A	5.674e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6500225	2L_6500225_SNP [dm3] 2L_6500225_SNP [dm6]	A	T	5.686e^-4	0.983	INTRON CG31637
3L	14142841	3L_14142841_SNP [dm3] 3L_14149741_SNP [dm6]	T	A	5.687e^-4	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	5.688e^-4	0.983	INTRON CG44837 & 1 other
X	16428005	X_16428005_SNP [dm3] X_16533972_SNP [dm6]	C	T	5.691e^-4	0.983	UPSTREAM para INTERGENIC
2R	7837024	2R_7837024_SNP [dm3] 2R_11949519_SNP [dm6]	G	C	5.691e^-4	0.983	INTRON CG13188
4	494445	4_494445_SNP [dm3] 4_473819_SNP [dm6]	G	A	5.696e^-4	0.983	INTRON Asator
X	17892034	X_17892034_SNP [dm3] X_17998001_SNP [dm6]	T	C	5.698e^-4	0.983	INTRON Sh
3L	19009769	3L_19009769_SNP [dm3] 3L_19016669_SNP [dm6]	C	T	5.698e^-4	0.983	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	5.701e^-4	0.983	INTRON CG30463
X	4315530	X_4315530_SNP [dm3] X_4421497_SNP [dm6]	G	T	5.702e^-4	0.983	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2L	12644697	2L_12644697_SNP [dm3] 2L_12644697_SNP [dm6]	T	C	5.712e^-4	0.983	INTRON Ref2
2R	16634383	2R_16634383_SNP [dm3] 2R_20746878_SNP [dm6]	T	C	5.717e^-4	0.983	INTRON dpr
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	5.722e^-4	0.983	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16782948	2R_16782948_SNP [dm3] 2R_20895443_SNP [dm6]	T	C	5.722e^-4	0.983	INTRON otp
2R	16783273	2R_16783273_SNP [dm3] 2R_20895768_SNP [dm6]	G	A	5.722e^-4	0.983	SYNONYMOUS_CODING otp
3L	3008329	3L_3008329_SNP [dm3] 3L_3008329_SNP [dm6]	A	G	5.730e^-4	0.983	INTRON FMRFaR
X	17318619	X_17318619_SNP [dm3] X_17424586_SNP [dm6]	A	G	5.742e^-4	0.983	INTRON CG12994 & 1 other
X	17318628	X_17318628_SNP [dm3] X_17424595_SNP [dm6]	T	C	5.742e^-4	0.983	INTRON CG12994 & 1 other
3L	6477991	3L_6477991_SNP [dm3] 3L_6484891_SNP [dm6]	C	A	5.743e^-4	0.983	SYNONYMOUS_CODING CG42747	TF binding site mE1_TFBS_cad
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	5.746e^-4	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

Total_Leg_Length_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results