DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.981e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01234

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.4759	0.0238

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1633 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	5.257e^-7	0.351	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	5.726e^-7	0.351	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20005864	X_20005864_INS [dm3] X_20111831_INS [dm6]	C	CCACACTT	9.707e^-7	0.351	INTERGENIC
X	20005872	X_20005872_SNP [dm3] X_20111839_SNP [dm6]	C	A	9.710e^-7	0.351	INTERGENIC
X	20006044	X_20006044_SNP [dm3] X_20112011_SNP [dm6]	A	C	9.791e^-7	0.351	INTERGENIC
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	1.266e^-6	0.351	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	1.368e^-6	0.351	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	1.499e^-6	0.351	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	2.314e^-6	0.445	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	2.376e^-6	0.445	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	3.447e^-6	0.587	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20005863	X_20005863_SNP [dm3] X_20111830_SNP [dm6]	A	T	4.346e^-6	0.679	INTERGENIC
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	5.191e^-6	0.73	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	5.713e^-6	0.73	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
X	20005882	X_20005882_SNP [dm3] X_20111849_SNP [dm6]	T	A	5.843e^-6	0.73	INTERGENIC
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	6.289e^-6	0.737	INTRON shep
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	6.728e^-6	0.742	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	7.962e^-6	0.829	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	9.141e^-6	0.901	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	1.044e^-5	0.917	INTRON hdc
2R	7638329	2R_7638329_SNP [dm3] 2R_11750824_SNP [dm6]	G	C	1.049e^-5	0.917	INTERGENIC
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.115e^-5	0.917	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	1.157e^-5	0.917	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22502604	3R_22502604_SNP [dm3] 3R_26676882_SNP [dm6]	A	G	1.215e^-5	0.917	INTRON beat-VII
X	20005862	X_20005862_SNP [dm3] X_20111829_SNP [dm6]	A	G	1.223e^-5	0.917	INTERGENIC
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	1.325e^-5	0.949	UPSTREAM CG15403 INTRON toc
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	1.368e^-5	0.949	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	1.474e^-5	0.968	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	1.503e^-5	0.968	INTRON beat-Ib
3L	8147928	3L_8147928_SNP [dm3] 3L_8154828_SNP [dm6]	T	C	1.573e^-5	0.968	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19009551	2L_19009551_SNP [dm3] 2L_19009551_SNP [dm6]	C	T	1.605e^-5	0.968	UPSTREAM snoRNA:Me28S-A2113 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	1.653e^-5	0.968	INTERGENIC
X	20006063	X_20006063_SNP [dm3] X_20112030_SNP [dm6]	G	A	1.820e^-5	1	INTERGENIC
2L	6309366	2L_6309366_SNP [dm3] 2L_6309366_SNP [dm6]	G	T	1.916e^-5	1	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	2.015e^-5	1	INTRON drd
X	20006135	X_20006135_SNP [dm3] X_20112102_SNP [dm6]	C	T	2.189e^-5	1	INTERGENIC
3R	5620944	3R_5620944_SNP [dm3] 3R_9795222_SNP [dm6]	A	G	2.255e^-5	1	SYNONYMOUS_CODING CG8516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	2.364e^-5	1	INTERGENIC
X	2566359	X_2566359_SNP [dm3] X_2672326_SNP [dm6]	C	T	2.385e^-5	1	INTRON sgg
X	20006075	X_20006075_SNP [dm3] X_20112042_SNP [dm6]	T	G	2.413e^-5	1	INTERGENIC
3R	16006326	3R_16006326_SNP [dm3] 3R_20180604_SNP [dm6]	G	A	2.430e^-5	1	INTERGENIC
3R	13332939	3R_13332939_SNP [dm3] 3R_17507217_SNP [dm6]	A	G	2.575e^-5	1	INTERGENIC
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	2.580e^-5	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	2.888e^-5	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
X	20006040	X_20006040_SNP [dm3] X_20112007_SNP [dm6]	T	C	2.943e^-5	1	INTERGENIC
3L	18882511	3L_18882511_SNP [dm3] 3L_18889411_SNP [dm6]	G	A	2.973e^-5	1	INTRON CG3961
X	2566309	X_2566309_DEL [dm3] X_2672276_DEL [dm6]	ATCATGACTAC...	G	2.998e^-5	1	INTRON sgg
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	3.193e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	3.430e^-5	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	3.532e^-5	1	INTRON CG32365
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	3.537e^-5	1	INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	3.685e^-5	1	SYNONYMOUS_CODING S-Lap2
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	3.752e^-5	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	3.752e^-5	1	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3R	16006333	3R_16006333_SNP [dm3] 3R_20180611_SNP [dm6]	T	A	3.788e^-5	1	INTERGENIC
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	3.799e^-5	1	INTRON CG34377
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	3.861e^-5	1	INTERGENIC
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	3.875e^-5	1	INTRON Dscam2	TF binding site mE1_TFBS_HSA
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	4.003e^-5	1	INTRON CG5888
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	4.142e^-5	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	4.199e^-5	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	4.253e^-5	1	UPSTREAM para INTERGENIC
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	4.295e^-5	1	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	4.346e^-5	1	UPSTREAM CG5890 INTRON CG5890
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	4.346e^-5	1	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	4.422e^-5	1	UTR_3_PRIME Sema-2a
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	4.465e^-5	1	UTR_3_PRIME Sema-2a
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	4.466e^-5	1	UPSTREAM para INTERGENIC
2R	16329167	2R_16329167_SNP [dm3] 2R_20441662_SNP [dm6]	G	C	4.508e^-5	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3R	1615087	3R_1615087_SNP [dm3] 3R_5789365_SNP [dm6]	G	A	4.514e^-5	1	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	12601069	X_12601069_SNP [dm3] X_12707036_SNP [dm6]	C	T	4.897e^-5	1	NON_SYNONYMOUS_CODING CG15725 INTRON Smr
3R	5607387	3R_5607387_SNP [dm3] 3R_9781665_SNP [dm6]	T	A	4.901e^-5	1	INTRON CG12947 EXON CR31514	TF binding site mE1_TFBS_chinmo
2L	7984561	2L_7984561_SNP [dm3] 2L_7984561_SNP [dm6]	C	A	4.914e^-5	1	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	4.960e^-5	1	INTERGENIC
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	5.026e^-5	1	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4306834	3L_4306834_SNP [dm3] 3L_4306834_SNP [dm6]	G	A	5.088e^-5	1	INTRON dyl
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	5.104e^-5	1	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	5.105e^-5	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	5.129e^-5	1	INTERGENIC
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	5.383e^-5	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	12090681	2R_12090681_SNP [dm3] 2R_16203176_SNP [dm6]	C	T	5.532e^-5	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	12090533	2R_12090533_SNP [dm3] 2R_16203028_SNP [dm6]	G	T	5.755e^-5	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3L	4306709	3L_4306709_SNP [dm3] 3L_4306709_SNP [dm6]	A	T	5.849e^-5	1	INTRON dyl
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	5.883e^-5	1	INTRON beat-Ib
3R	17339520	3R_17339520_SNP [dm3] 3R_21513798_SNP [dm6]	A	T	5.990e^-5	1	DOWNSTREAM C15 INTERGENIC
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	6.078e^-5	1	UPSTREAM para INTERGENIC
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	6.253e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	6.524e^-5	1	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	6.563e^-5	1	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
X	12845227	X_12845227_SNP [dm3] X_12951194_SNP [dm6]	G	T	6.625e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
2L	7986739	2L_7986739_SNP [dm3] 2L_7986739_SNP [dm6]	C	A	6.626e^-5	1	UTR_3_PRIME CG7231 DOWNSTREAM pes
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	6.810e^-5	1	UPSTREAM para INTERGENIC
X	20006038	X_20006038_SNP [dm3] X_20112005_SNP [dm6]	C	T	6.842e^-5	1	INTERGENIC
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	6.948e^-5	1	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1585197	3L_1585197_SNP [dm3] 3L_1585197_SNP [dm6]	T	G	6.974e^-5	1	INTRON CG13917
3L	1588011	3L_1588011_SNP [dm3] 3L_1588011_SNP [dm6]	T	A	7.022e^-5	1	INTRON CG13917
2L	15949285	2L_15949285_SNP [dm3] 2L_15949285_SNP [dm6]	G	A	7.025e^-5	1	INTRON beat-Ib
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	7.089e^-5	1	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	7.175e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
3R	26005430	3R_26005430_SNP [dm3] 3R_30179708_SNP [dm6]	T	C	7.204e^-5	1	UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	7.425e^-5	1	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	1588044	3L_1588044_SNP [dm3] 3L_1588044_SNP [dm6]	C	A	7.526e^-5	1	INTRON CG13917
3L	17584342	3L_17584342_INS [dm3] 3L_17591242_INS [dm6]	C	CT	7.574e^-5	1	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	7.626e^-5	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	7.636e^-5	1	INTRON rgn
3L	9436421	3L_9436421_INS [dm3] 3L_9443321_INS [dm6]	C	ATT	7.651e^-5	1	UTR_5_PRIME CG33926	TF binding site BDTNP1_TFBS_dl
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	7.733e^-5	1	INTERGENIC
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	7.906e^-5	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	4307576	3L_4307576_SNP [dm3] 3L_4307576_SNP [dm6]	T	C	7.923e^-5	1	UTR_5_PRIME dyl
3R	25927653	3R_25927653_SNP [dm3] 3R_30101931_SNP [dm6]	T	A	7.933e^-5	1	INTRON sima
2L	6309349	2L_6309349_SNP [dm3] 2L_6309349_SNP [dm6]	A	T	8.021e^-5	1	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	8.026e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	8.041e^-5	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	8.041e^-5	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	16006328	3R_16006328_SNP [dm3] 3R_20180606_SNP [dm6]	A	G	8.083e^-5	1	INTERGENIC
2L	7985122	2L_7985122_SNP [dm3] 2L_7985122_SNP [dm6]	G	C	8.092e^-5	1	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	8.181e^-5	1	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	8.211e^-5	1	INTERGENIC
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	8.265e^-5	1	NON_SYNONYMOUS_CODING mbc
3R	24085077	3R_24085077_SNP [dm3] 3R_28259355_SNP [dm6]	G	A	8.341e^-5	1	INTERGENIC
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	8.436e^-5	1	INTRON a
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	8.524e^-5	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	8.541e^-5	1	INTRON CG13917
X	17956023	X_17956023_SNP [dm3] X_18061990_SNP [dm6]	T	C	8.636e^-5	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956015	X_17956015_SNP [dm3] X_18061982_SNP [dm6]	C	T	8.708e^-5	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	17379085	3R_17379085_SNP [dm3] 3R_21553363_SNP [dm6]	A	G	8.912e^-5	1	INTRON slou
3L	16972518	3L_16972518_DEL [dm3] 3L_16979418_DEL [dm6]	CTTTTATTTACATTGGTC...	C	8.952e^-5	1	INTRON Exn
3R	11181082	3R_11181082_SNP [dm3] 3R_15355360_SNP [dm6]	G	T	8.964e^-5	1	SPLICE_SITE_REGION Atg4b INTRON Atg4b
3R	11181100	3R_11181100_SNP [dm3] 3R_15355378_SNP [dm6]	G	A	9.157e^-5	1	INTRON Atg4b	TF binding site mE1_TFBS_chinmo
2L	1094324	2L_1094324_SNP [dm3] 2L_1094324_SNP [dm6]	A	G	9.300e^-5	1	INTRON CG4629
2L	9014905	2L_9014905_SNP [dm3] 2L_9014905_SNP [dm6]	G	A	9.332e^-5	1	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2566553	X_2566553_INS [dm3] X_2672520_INS [dm6]	G	GCTTG	9.349e^-5	1	INTRON sgg
3R	22901000	3R_22901000_SNP [dm3] 3R_27075278_SNP [dm6]	A	T	9.361e^-5	1	UPSTREAM CG14257 INTERGENIC
3L	1587821	3L_1587821_SNP [dm3] 3L_1587821_SNP [dm6]	G	T	9.366e^-5	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	9.445e^-5	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	17339525	3R_17339525_SNP [dm3] 3R_21513803_SNP [dm6]	A	G	9.462e^-5	1	DOWNSTREAM C15 INTERGENIC
3L	11680182	3L_11680182_SNP [dm3] 3L_11687082_SNP [dm6]	G	A	9.534e^-5	1	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	9.565e^-5	1	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	9.575e^-5	1	INTRON bnl
3L	13915774	3L_13915774_SNP [dm3] 3L_13922674_SNP [dm6]	T	C	9.580e^-5	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	4300956	2R_4300956_SNP [dm3] 2R_8413451_SNP [dm6]	T	C	9.667e^-5	1	INTERGENIC
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	9.708e^-5	1	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	9.788e^-5	1	INTRON hdc
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	9.806e^-5	1	INTRON bbg
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	9.817e^-5	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	9.834e^-5	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	9.907e^-5	1	INTRON CG6154
2L	7988252	2L_7988252_SNP [dm3] 2L_7988252_SNP [dm6]	A	T	1.006e^-4	1	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	14033998	3R_14033998_DEL [dm3] 3R_18208276_DEL [dm6]	GGCTTATGG	G	1.007e^-4	1	UPSTREAM CG44158 INTRON CG7985
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	1.029e^-4	1	INTRON CG34377
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	1.039e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25111269	3R_25111269_SNP [dm3] 3R_29285547_SNP [dm6]	A	T	1.049e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	1624873	3R_1624873_SNP [dm3] 3R_5799151_SNP [dm6]	C	T	1.055e^-4	1	UTR_3_PRIME CG10979 DOWNSTREAM CG10979
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	1.067e^-4	1	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
2R	8921245	2R_8921245_SNP [dm3] 2R_13033740_SNP [dm6]	T	C	1.070e^-4	1	INTERGENIC
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	1.071e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	1.072e^-4	1	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3R	15100369	3R_15100369_DEL [dm3] 3R_19274647_DEL [dm6]	AA	A	1.073e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	1.101e^-4	1	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
3R	18063190	3R_18063190_SNP [dm3] 3R_22237468_SNP [dm6]	C	T	1.103e^-4	1	INTRON SKIP
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	1.106e^-4	1	INTRON CG13917
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	1.115e^-4	1	INTERGENIC
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	1.128e^-4	1	INTRON CG30463
3R	14080173	3R_14080173_SNP [dm3] 3R_18254451_SNP [dm6]	A	G	1.142e^-4	1	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
2L	1954616	2L_1954616_SNP [dm3] 2L_1954616_SNP [dm6]	G	A	1.148e^-4	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	1.160e^-4	1	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	15304197	3L_15304197_SNP [dm3] 3L_15311097_SNP [dm6]	A	G	1.171e^-4	1	UTR_3_PRIME CG7255
2R	8922095	2R_8922095_INS [dm3] 2R_13034590_INS [dm6]	A	AGCG	1.176e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	1.179e^-4	1	DOWNSTREAM CG3982 INTRON CG3967
2R	20589816	2R_20589816_SNP [dm3] 2R_24702293_SNP [dm6]	A	G	1.187e^-4	1	INTRON Mid1
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.191e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.191e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	18252585	3L_18252585_SNP [dm3] 3L_18259485_SNP [dm6]	G	T	1.191e^-4	1	INTERGENIC
2R	8922291	2R_8922291_SNP [dm3] 2R_13034786_SNP [dm6]	G	A	1.215e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	1.218e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	1.221e^-4	1	INTERGENIC
3L	9182871	3L_9182871_SNP [dm3] 3L_9189771_SNP [dm6]	A	G	1.226e^-4	1	INTERGENIC
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	1.233e^-4	1	INTRON msi
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	1.239e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	4261680	3R_4261680_SNP [dm3] 3R_8435958_SNP [dm6]	C	G	1.242e^-4	1	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16428055	X_16428055_SNP [dm3] X_16534022_SNP [dm6]	C	T	1.246e^-4	1	UPSTREAM para INTERGENIC
2L	6581670	2L_6581670_SNP [dm3] 2L_6581670_SNP [dm6]	T	A	1.284e^-4	1	INTRON CG11319
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	1.292e^-4	1	DOWNSTREAM CG17199 INTRON Nlg4
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	1.309e^-4	1	UPSTREAM CG33225 INTERGENIC
3L	4308579	3L_4308579_SNP [dm3] 3L_4308579_SNP [dm6]	A	T	1.314e^-4	1	UPSTREAM dyl INTERGENIC
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	1.349e^-4	1	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	1.356e^-4	1	INTRON Pkc53E
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	1.358e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	1.361e^-4	1	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	1.361e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11345778	3L_11345778_SNP [dm3] 3L_11352678_SNP [dm6]	T	G	1.371e^-4	1	INTERGENIC
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	1.387e^-4	1	INTRON spg
3L	14048096	3L_14048096_SNP [dm3] 3L_14054996_SNP [dm6]	A	G	1.390e^-4	1	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3632619	3L_3632619_SNP [dm3] 3L_3632619_SNP [dm6]	A	C	1.396e^-4	1	INTRON dar1	TF binding site BDTNP1_TFBS_dl
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	1.398e^-4	1	INTRON sm
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	1.399e^-4	1	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	17184878	2L_17184878_SNP [dm3] 2L_17184878_SNP [dm6]	G	A	1.407e^-4	1	INTERGENIC
2L	7986540	2L_7986540_SNP [dm3] 2L_7986540_SNP [dm6]	C	T	1.408e^-4	1	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
2R	8922229	2R_8922229_SNP [dm3] 2R_13034724_SNP [dm6]	T	A	1.436e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	1.437e^-4	1	INTRON caps
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	1.448e^-4	1	UPSTREAM para INTERGENIC
3R	19848837	3R_19848837_SNP [dm3] 3R_24023115_SNP [dm6]	G	A	1.459e^-4	1	INTRON KrT95D	TF binding site mE1_TFBS_HSA
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	1.465e^-4	1	INTERGENIC
X	12141720	X_12141720_SNP [dm3] X_12247687_SNP [dm6]	A	G	1.468e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	1.473e^-4	1	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	1.473e^-4	1	INTRON kel
3R	22103934	3R_22103934_INS [dm3] 3R_26278212_INS [dm6]	A	ATAAAG	1.479e^-4	1	INTERGENIC
2L	7497990	2L_7497990_DEL [dm3] 2L_7497990_DEL [dm6]	TT	T	1.506e^-4	1	UTR_3_PRIME RapGAP1 UPSTREAM Obp28a
2R	17095925	2R_17095925_SNP [dm3] 2R_21208420_SNP [dm6]	C	T	1.513e^-4	1	INTRON CG44245 & 1 other
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	1.516e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	19974098	3R_19974098_SNP [dm3] 3R_24148376_SNP [dm6]	T	G	1.517e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2R	16522079	2R_16522079_SNP [dm3] 2R_20634574_SNP [dm6]	C	A	1.526e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2L	22077405	2L_22077405_SNP [dm3] 2L_22077405_SNP [dm6]	A	G	1.529e^-4	1	INTERGENIC
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	1.537e^-4	1	INTRON Ptp61F
3R	6991476	3R_6991476_SNP [dm3] 3R_11165754_SNP [dm6]	G	T	1.540e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3R	17339518	3R_17339518_SNP [dm3] 3R_21513796_SNP [dm6]	T	C	1.544e^-4	1	DOWNSTREAM C15 INTERGENIC
X	16428015	X_16428015_SNP [dm3] X_16533982_SNP [dm6]	T	A	1.548e^-4	1	UPSTREAM para INTERGENIC
2L	18302498	2L_18302498_SNP [dm3] 2L_18302498_SNP [dm6]	G	A	1.550e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	3509956	2R_3509956_SNP [dm3] 2R_7622451_SNP [dm6]	C	G	1.553e^-4	1	UPSTREAM CG43340 EXON CR44444
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	1.556e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	7748646	2L_7748646_SNP [dm3] 2L_7748646_SNP [dm6]	A	G	1.556e^-4	1	DOWNSTREAM CG7211 INTERGENIC
3L	9082690	3L_9082690_SNP [dm3] 3L_9089590_SNP [dm6]	C	A	1.561e^-4	1	NON_SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	1.565e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	1.575e^-4	1	INTRON rgn
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	1.577e^-4	1	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15428999	3L_15428999_SNP [dm3] 3L_15435899_SNP [dm6]	C	A	1.577e^-4	1	INTERGENIC
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	1.582e^-4	1	INTRON Sema-2b
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	1.586e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	1.598e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	10124322	3L_10124322_SNP [dm3] 3L_10131222_SNP [dm6]	C	T	1.601e^-4	1	INTRON dpr6
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.611e^-4	1	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	1.623e^-4	1	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	7197266	2L_7197266_SNP [dm3] 2L_7197266_SNP [dm6]	A	G	1.632e^-4	1	INTRON CG4502
2R	17662050	2R_17662050_SNP [dm3] 2R_21774545_SNP [dm6]	G	A	1.638e^-4	1	INTRON CG4021
X	13035336	X_13035336_SNP [dm3] X_13141303_SNP [dm6]	G	A	1.643e^-4	1	INTRON CG32645
3L	7641337	3L_7641337_SNP [dm3] 3L_7648237_SNP [dm6]	T	A	1.653e^-4	1	INTERGENIC
2L	19363646	2L_19363646_SNP [dm3] 2L_19363646_SNP [dm6]	C	A	1.665e^-4	1	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18136475	2L_18136475_SNP [dm3] 2L_18136475_SNP [dm6]	G	A	1.680e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
2L	9149896	2L_9149896_SNP [dm3] 2L_9149896_SNP [dm6]	C	T	1.682e^-4	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3287944	2R_3287944_SNP [dm3] 2R_7400439_SNP [dm6]	A	T	1.685e^-4	1	UPSTREAM CG11112 INTRON Eaf
X	12141627	X_12141627_SNP [dm3] X_12247594_SNP [dm6]	G	A	1.685e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8226548	2L_8226548_SNP [dm3] 2L_8226548_SNP [dm6]	G	A	1.689e^-4	1	SYNONYMOUS_CODING Pvr
3R	19974057	3R_19974057_SNP [dm3] 3R_24148335_SNP [dm6]	T	C	1.689e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.692e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.692e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	3290351	2L_3290351_SNP [dm3] 2L_3290351_SNP [dm6]	T	C	1.695e^-4	1	DOWNSTREAM CG9664 INTERGENIC
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	1.701e^-4	1	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	1.704e^-4	1	UTR_3_PRIME dpr3
2L	2841738	2L_2841738_SNP [dm3] 2L_2841738_SNP [dm6]	T	C	1.704e^-4	1	DOWNSTREAM CG18558 INTRON CG2975
3R	24103836	3R_24103836_SNP [dm3] 3R_28278114_SNP [dm6]	A	C	1.707e^-4	1	INTERGENIC
3L	1796408	3L_1796408_SNP [dm3] 3L_1796408_SNP [dm6]	G	A	1.712e^-4	1	SYNONYMOUS_CODING Cdc37 UPSTREAM CG12020	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18063306	3R_18063306_SNP [dm3] 3R_22237584_SNP [dm6]	G	A	1.712e^-4	1	INTRON SKIP
3L	4929907	3L_4929907_INS [dm3] 3L_4929907_INS [dm6]	T	TGAATAATGATACGGAATAC...	1.724e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929910	3L_4929910_SNP [dm3] 3L_4929910_SNP [dm6]	T	A	1.724e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929912	3L_4929912_SNP [dm3] 3L_4929912_SNP [dm6]	C	T	1.724e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	1.731e^-4	1	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3R	15163581	3R_15163581_SNP [dm3] 3R_19337859_SNP [dm6]	T	C	1.734e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13329125	2L_13329125_SNP [dm3] 2L_13329125_SNP [dm6]	C	A	1.735e^-4	1	INTRON CG43778
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	1.739e^-4	1	INTERGENIC
2R	8922093	2R_8922093_SNP [dm3] 2R_13034588_SNP [dm6]	A	G	1.740e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	1.747e^-4	1	INTERGENIC
3L	11851378	3L_11851378_SNP [dm3] 3L_11858278_SNP [dm6]	G	A	1.751e^-4	1	INTRON CG44837
3L	15227505	3L_15227505_DEL [dm3] 3L_15234405_DEL [dm6]	CGCC	C	1.764e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14418922	3L_14418922_SNP [dm3] 3L_14425822_SNP [dm6]	A	T	1.765e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	1.775e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	1.781e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	1.783e^-4	1	INTRON CG32365
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	1.784e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
2L	9511383	2L_9511383_SNP [dm3] 2L_9511383_SNP [dm6]	C	G	1.789e^-4	1	INTRON CG33298
3L	15698985	3L_15698985_SNP [dm3] 3L_15705885_SNP [dm6]	G	T	1.796e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14080050	3R_14080050_SNP [dm3] 3R_18254328_SNP [dm6]	T	A	1.797e^-4	1	INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
X	22076525	X_22076525_SNP [dm3] X_22674689_SNP [dm6]	C	G	1.805e^-4	1	INTRON CR44997
3R	22125750	3R_22125750_SNP [dm3] 3R_26300028_SNP [dm6]	C	T	1.806e^-4	1	INTERGENIC
3L	9779662	3L_9779662_SNP [dm3] 3L_9786562_SNP [dm6]	T	C	1.808e^-4	1	DOWNSTREAM CG8177 INTERGENIC
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	1.810e^-4	1	INTERGENIC
X	3861922	X_3861922_SNP [dm3] X_3967889_SNP [dm6]	A	T	1.811e^-4	1	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3L	1588852	3L_1588852_SNP [dm3] 3L_1588852_SNP [dm6]	T	G	1.816e^-4	1	UTR_5_PRIME CG13917 INTRON CG13917
3L	11699174	3L_11699174_SNP [dm3] 3L_11706074_SNP [dm6]	C	T	1.822e^-4	1	INTRON CG11658
2L	7988129	2L_7988129_SNP [dm3] 2L_7988129_SNP [dm6]	A	G	1.825e^-4	1	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad
3R	13648640	3R_13648640_SNP [dm3] 3R_17822918_SNP [dm6]	G	A	1.825e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	1.826e^-4	1	INTRON bbg
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	1.828e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	1.854e^-4	1	INTRON dnt	TF binding site mE1_TFBS_cad
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	1.857e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2R	1506136	2R_1506136_SNP [dm3] 2R_5618631_SNP [dm6]	C	A	1.860e^-4	1	INTERGENIC	transposable element FlyBase
3L	9947631	3L_9947631_SNP [dm3] 3L_9954531_SNP [dm6]	T	C	1.864e^-4	1	INTRON CG34356
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	1.865e^-4	1	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	25215084	3R_25215084_SNP [dm3] 3R_29389362_SNP [dm6]	T	A	1.876e^-4	1	INTRON Ptp99A
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	1.880e^-4	1	INTERGENIC
3R	15876381	3R_15876381_SNP [dm3] 3R_20050659_SNP [dm6]	G	C	1.881e^-4	1	INTRON CG17193
3R	19232074	3R_19232074_SNP [dm3] 3R_23406352_SNP [dm6]	C	T	1.882e^-4	1	SYNONYMOUS_CODING Ir94e
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	1.888e^-4	1	SYNONYMOUS_CODING Or35a
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	1.890e^-4	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3319015	2R_3319015_SNP [dm3] 2R_7431510_SNP [dm6]	T	G	1.893e^-4	1	DOWNSTREAM CR44204 INTRON so	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	1.901e^-4	1	INTERGENIC
2R	8922111	2R_8922111_SNP [dm3] 2R_13034606_SNP [dm6]	C	G	1.904e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14947167	2R_14947167_SNP [dm3] 2R_19059662_SNP [dm6]	T	G	1.912e^-4	1	START_GAINED CG15109 UTR_5_PRIME CG15109 INTRON CG15109
3R	19973970	3R_19973970_SNP [dm3] 3R_24148248_SNP [dm6]	G	A	1.915e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	17457918	2L_17457918_SNP [dm3] 2L_17457918_SNP [dm6]	T	A	1.928e^-4	1	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050
3R	23976256	3R_23976256_INS [dm3] 3R_28150534_INS [dm6]	A	ACTTAAGTCCCGC...	1.930e^-4	1	INTRON CG34354
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	1.934e^-4	1	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
3L	1582779	3L_1582779_SNP [dm3] 3L_1582779_SNP [dm6]	A	T	1.943e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	7399725	2R_7399725_SNP [dm3] 2R_11512220_SNP [dm6]	G	C	1.952e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19166959	X_19166959_SNP [dm3] X_19272926_SNP [dm6]	G	T	1.963e^-4	1	UTR_3_PRIME Vav DOWNSTREAM Vav & 1 other	TF binding site mE1_TFBS_zfh1
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	1.964e^-4	1	UTR_3_PRIME CG31030
2R	16248813	2R_16248813_INS [dm3] 2R_20361308_INS [dm6]	C	CC	1.965e^-4	1	INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	1.975e^-4	1	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	1.979e^-4	1	DOWNSTREAM mbl INTRON mbl
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	2.000e^-4	1	INTRON CG32206
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	2.001e^-4	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3R	1639477	3R_1639477_SNP [dm3] 3R_5813755_SNP [dm6]	C	A	2.001e^-4	1	UTR_5_PRIME CG42675 UPSTREAM CG42675 DOWNSTREAM CG11000
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	2.005e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	6588378	2R_6588378_SNP [dm3] 2R_10700873_SNP [dm6]	T	C	2.009e^-4	1	INTRON stan
2L	11368632	2L_11368632_SNP [dm3] 2L_11368632_SNP [dm6]	A	T	2.016e^-4	1	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
3R	16006348	3R_16006348_SNP [dm3] 3R_20180626_SNP [dm6]	G	T	2.019e^-4	1	INTERGENIC
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	2.021e^-4	1	INTERGENIC
3R	18444444	3R_18444444_SNP [dm3] 3R_22618722_SNP [dm6]	G	T	2.027e^-4	1	NON_SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5824647	2L_5824647_DEL [dm3] 2L_5824647_DEL [dm6]	AATCATTAAATGCA...	A	2.037e^-4	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
3L	1586302	3L_1586302_DEL [dm3] 3L_1586302_DEL [dm6]	CTTTCTTG	AA	2.040e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	2.045e^-4	1	INTRON dpr3
2R	8922168	2R_8922168_SNP [dm3] 2R_13034663_SNP [dm6]	T	A	2.046e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25216026	3R_25216026_SNP [dm3] 3R_29390304_SNP [dm6]	A	G	2.046e^-4	1	INTRON Ptp99A
3R	18063302	3R_18063302_SNP [dm3] 3R_22237580_SNP [dm6]	C	G	2.090e^-4	1	INTRON SKIP
2L	18136452	2L_18136452_SNP [dm3] 2L_18136452_SNP [dm6]	G	A	2.091e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
2R	12048243	2R_12048243_SNP [dm3] 2R_16160738_SNP [dm6]	G	T	2.094e^-4	1	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20563794	X_20563794_SNP [dm3] X_20692767_SNP [dm6]	A	G	2.116e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	1706520	3L_1706520_SNP [dm3] 3L_1706520_SNP [dm6]	G	C	2.118e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3964524	2L_3964524_SNP [dm3] 2L_3964524_SNP [dm6]	G	A	2.133e^-4	1	INTRON fred
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	2.142e^-4	1	UPSTREAM CG2127 & 1 other INTRON pdm3
2L	10910966	2L_10910966_DEL [dm3] 2L_10910966_DEL [dm6]	TTAGC	T	2.145e^-4	1	UPSTREAM CG14069 INTERGENIC
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	2.157e^-4	1	INTRON sm
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	2.157e^-4	1	NON_SYNONYMOUS_CODING CG32984
3L	9088315	3L_9088315_SNP [dm3] 3L_9095215_SNP [dm6]	A	G	2.180e^-4	1	DOWNSTREAM CG32032 INTERGENIC
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	2.180e^-4	1	INTRON Pkc53E
3R	20839679	3R_20839679_SNP [dm3] 3R_25013957_SNP [dm6]	G	C	2.194e^-4	1	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	2.195e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19674559	3R_19674559_SNP [dm3] 3R_23848837_SNP [dm6]	C	T	2.196e^-4	1	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad
2L	16230363	2L_16230363_SNP [dm3] 2L_16230363_SNP [dm6]	A	T	2.199e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	1705417	2L_1705417_SNP [dm3] 2L_1705417_SNP [dm6]	C	T	2.200e^-4	1	SYNONYMOUS_CODING cpb DOWNSTREAM chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19269983	3L_19269983_SNP [dm3] 3L_19276883_SNP [dm6]	A	G	2.230e^-4	1	INTRON CG14086
3R	14221089	3R_14221089_SNP [dm3] 3R_18395367_SNP [dm6]	T	A	2.231e^-4	1	INTRON Vha100-2
2L	17378058	2L_17378058_SNP [dm3] 2L_17378058_SNP [dm6]	C	T	2.231e^-4	1	INTRON Lrch
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	2.241e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	2.251e^-4	1	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12090757	2R_12090757_SNP [dm3] 2R_16203252_SNP [dm6]	G	A	2.265e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	2.268e^-4	1	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	2.272e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	1084010	3L_1084010_SNP [dm3] 3L_1084010_SNP [dm6]	C	T	2.274e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	18132912	2L_18132912_SNP [dm3] 2L_18132912_SNP [dm6]	C	G	2.275e^-4	1	INTRON kel	TF binding site mE1_TFBS_cad
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	2.279e^-4	1	INTRON twin
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	2.289e^-4	1	INTRON Eip63E
2R	13259577	2R_13259577_SNP [dm3] 2R_17372072_SNP [dm6]	C	A	2.300e^-4	1	INTRON mbl
3R	26005443	3R_26005443_SNP [dm3] 3R_30179721_SNP [dm6]	G	C	2.301e^-4	1	UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	13152430	X_13152430_SNP [dm3] X_13258397_SNP [dm6]	G	A	2.305e^-4	1	UTR_5_PRIME CG15742 & 1 other UPSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
X	17430389	X_17430389_SNP [dm3] X_17536356_SNP [dm6]	A	C	2.311e^-4	1	INTRON CG43658
X	17922062	X_17922062_SNP [dm3] X_18028029_SNP [dm6]	T	A	2.317e^-4	1	INTRON Sh & 1 other
X	17344319	X_17344319_SNP [dm3] X_17450286_SNP [dm6]	G	T	2.318e^-4	1	NON_SYNONYMOUS_CODING CG8568
3L	1589050	3L_1589050_SNP [dm3] 3L_1589050_SNP [dm6]	C	A	2.329e^-4	1	INTRON CG13917
X	17383065	X_17383065_SNP [dm3] X_17489032_SNP [dm6]	A	C	2.337e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
3R	17781235	3R_17781235_DEL [dm3] 3R_21955513_DEL [dm6]	CCACACCAC	C	2.338e^-4	1	INTRON Eip93F
2L	11138561	2L_11138561_INS [dm3] 2L_11138561_INS [dm6]	A	AAA	2.340e^-4	1	UTR_3_PRIME hgo DOWNSTREAM Gyc32E
3R	10114736	3R_10114736_SNP [dm3] 3R_14289014_SNP [dm6]	G	A	2.348e^-4	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	18139105	2L_18139105_SNP [dm3] 2L_18139105_SNP [dm6]	C	T	2.351e^-4	1	UTR_3_PRIME Socs36E
3R	17755562	3R_17755562_SNP [dm3] 3R_21929840_SNP [dm6]	T	C	2.355e^-4	1	INTERGENIC
X	12844944	X_12844944_SNP [dm3] X_12950911_SNP [dm6]	A	G	2.355e^-4	1	UTR_3_PRIME hec DOWNSTREAM hec & 1 other
2R	9937666	2R_9937666_SNP [dm3] 2R_14050161_SNP [dm6]	C	T	2.357e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_prd
2R	12090765	2R_12090765_DEL [dm3] 2R_16203260_DEL [dm6]	TGCATC	T	2.371e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	9937868	2R_9937868_SNP [dm3] 2R_14050363_SNP [dm6]	T	G	2.376e^-4	1	INTRON mam
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	2.382e^-4	1	DOWNSTREAM mthl13 INTRON CG33144
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	2.385e^-4	1	INTERGENIC
2L	7989834	2L_7989834_SNP [dm3] 2L_7989834_SNP [dm6]	C	T	2.388e^-4	1	INTRON pes	TF binding site mE1_TFBS_inv
3L	8450604	3L_8450604_INS [dm3] 3L_8457504_INS [dm6]	T	TGCCAGGCCAGGCAT...	2.388e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	18055184	3R_18055184_SNP [dm3] 3R_22229462_SNP [dm6]	T	C	2.395e^-4	1	INTRON SKIP
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	2.395e^-4	1	INTERGENIC
X	16428005	X_16428005_SNP [dm3] X_16533972_SNP [dm6]	C	T	2.396e^-4	1	UPSTREAM para INTERGENIC
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	2.405e^-4	1	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1583147	3L_1583147_SNP [dm3] 3L_1583147_SNP [dm6]	A	G	2.420e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	9583678	3L_9583678_SNP [dm3] 3L_9590578_SNP [dm6]	G	C	2.420e^-4	1	INTRON CG42673
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	2.426e^-4	1	SYNONYMOUS_CODING kel UTR_3_PRIME kel
X	3861374	X_3861374_SNP [dm3] X_3967341_SNP [dm6]	G	A	2.427e^-4	1	SPLICE_SITE_REGION CG6428 INTRON CG6428
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	2.431e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	19475713	3R_19475713_SNP [dm3] 3R_23649991_SNP [dm6]	C	T	2.432e^-4	1	INTRON CG31145
3L	2153868	3L_2153868_SNP [dm3] 3L_2153868_SNP [dm6]	A	T	2.440e^-4	1	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3L	12089503	3L_12089503_SNP [dm3] 3L_12096403_SNP [dm6]	T	A	2.441e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	8527124	3R_8527124_SNP [dm3] 3R_12701402_SNP [dm6]	C	T	2.444e^-4	1	INTRON Past1
3R	10272102	3R_10272102_SNP [dm3] 3R_14446380_SNP [dm6]	C	A	2.449e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da
3R	14079773	3R_14079773_SNP [dm3] 3R_18254051_SNP [dm6]	A	G	2.450e^-4	1	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	2.455e^-4	1	INTRON spir
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	2.457e^-4	1	INTERGENIC
X	3861396	X_3861396_SNP [dm3] X_3967363_SNP [dm6]	A	T	2.458e^-4	1	INTRON CG6428
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	2.461e^-4	1	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	11305284	3L_11305284_SNP [dm3] 3L_11312184_SNP [dm6]	A	G	2.482e^-4	1	NON_SYNONYMOUS_CODING CG7573
3R	22219022	3R_22219022_SNP [dm3] 3R_26393300_SNP [dm6]	A	C	2.500e^-4	1	INTERGENIC
X	2755744	X_2755744_INS [dm3] X_2861711_INS [dm6]	G	GG	2.504e^-4	1	INTRON kirre
3L	892575	3L_892575_SNP [dm3] 3L_892575_SNP [dm6]	G	A	2.515e^-4	1	UTR_3_PRIME CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10643865	3L_10643865_SNP [dm3] 3L_10650765_SNP [dm6]	A	G	2.516e^-4	1	INTRON CG32066
3L	11332277	3L_11332277_SNP [dm3] 3L_11339177_SNP [dm6]	A	G	2.517e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	17956120	X_17956120_SNP [dm3] X_18062087_SNP [dm6]	T	A	2.518e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	2.519e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	2.519e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	2.524e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	2.526e^-4	1	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	17045621	X_17045621_DEL [dm3] X_17151588_DEL [dm6]	AA	A	2.530e^-4	1	UTR_3_PRIME xmas-1 DOWNSTREAM CG5010
2L	2832881	2L_2832881_SNP [dm3] 2L_2832881_SNP [dm6]	C	T	2.532e^-4	1	INTERGENIC
2L	19359271	2L_19359271_SNP [dm3] 2L_19359271_SNP [dm6]	C	G	2.538e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17755586	3R_17755586_SNP [dm3] 3R_21929864_SNP [dm6]	C	A	2.549e^-4	1	INTERGENIC
3L	10644836	3L_10644836_SNP [dm3] 3L_10651736_SNP [dm6]	G	A	2.551e^-4	1	INTRON CG32066
3R	18149158	3R_18149158_SNP [dm3] 3R_22323436_SNP [dm6]	A	G	2.555e^-4	1	INTRON CG34377
3R	18149184	3R_18149184_SNP [dm3] 3R_22323462_SNP [dm6]	C	A	2.555e^-4	1	INTRON CG34377
3R	18149188	3R_18149188_SNP [dm3] 3R_22323466_SNP [dm6]	T	A	2.555e^-4	1	INTRON CG34377
3R	18149201	3R_18149201_SNP [dm3] 3R_22323479_SNP [dm6]	T	C	2.555e^-4	1	INTRON CG34377
3L	9684026	3L_9684026_SNP [dm3] 3L_9690926_SNP [dm6]	A	G	2.555e^-4	1	INTRON CG6767
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	2.562e^-4	1	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	2.571e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18064629	3R_18064629_SNP [dm3] 3R_22238907_SNP [dm6]	G	A	2.571e^-4	1	INTRON SKIP
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	2.573e^-4	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7976241	2L_7976241_SNP [dm3] 2L_7976241_SNP [dm6]	T	A	2.578e^-4	1	UTR_5_PRIME Snoo	TF binding site BDTNP1_TFBS_dl
X	14955301	X_14955301_SNP [dm3] X_15061268_SNP [dm6]	A	T	2.619e^-4	1	INTRON hiw
2L	8548001	2L_8548001_SNP [dm3] 2L_8548001_SNP [dm6]	C	T	2.621e^-4	1	INTRON Sema-1a
2L	16203693	2L_16203693_DEL [dm3] 2L_16203693_DEL [dm6]	ACATA	A	2.635e^-4	1	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10693164	X_10693164_SNP [dm3] X_10799131_SNP [dm6]	A	G	2.649e^-4	1	INTRON Imp
3L	1813302	3L_1813302_SNP [dm3] 3L_1813302_SNP [dm6]	C	T	2.656e^-4	1	INTRON GV1
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	2.658e^-4	1	INTERGENIC
2R	14518365	2R_14518365_SNP [dm3] 2R_18630860_SNP [dm6]	G	A	2.659e^-4	1	SYNONYMOUS_CODING CG5482
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.660e^-4	1	DOWNSTREAM mthl13 INTRON CG33144
2L	18302517	2L_18302517_SNP [dm3] 2L_18302517_SNP [dm6]	G	A	2.660e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18956721	2R_18956721_SNP [dm3] 2R_23069198_SNP [dm6]	A	C	2.661e^-4	1	UPSTREAM l_2_k09913 INTRON l_2_k09913
3L	19277239	3L_19277239_SNP [dm3] 3L_19284139_SNP [dm6]	G	A	2.661e^-4	1	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2L	4198265	2L_4198265_SNP [dm3] 2L_4198265_SNP [dm6]	A	G	2.662e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	2.663e^-4	1	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2R	8922092	2R_8922092_SNP [dm3] 2R_13034587_SNP [dm6]	C	T	2.664e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	18149186	3R_18149186_SNP [dm3] 3R_22323464_SNP [dm6]	A	G	2.665e^-4	1	INTRON CG34377
3R	19327471	3R_19327471_SNP [dm3] 3R_23501749_SNP [dm6]	G	T	2.679e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12112962	2L_12112962_SNP [dm3] 2L_12112962_SNP [dm6]	C	A	2.679e^-4	1	DOWNSTREAM Phae2 INTERGENIC
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	2.692e^-4	1	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	9658848	3L_9658848_SNP [dm3] 3L_9665748_SNP [dm6]	T	C	2.693e^-4	1	INTRON fry
3L	9436430	3L_9436430_SNP [dm3] 3L_9443330_SNP [dm6]	A	T	2.702e^-4	1	UTR_5_PRIME CG33926	TF binding site BDTNP1_TFBS_dl
3R	22285376	3R_22285376_SNP [dm3] 3R_26459654_SNP [dm6]	A	T	2.724e^-4	1	INTRON CG14238
X	8190815	X_8190815_SNP [dm3] X_8296782_SNP [dm6]	A	T	2.725e^-4	1	INTRON nAChRalpha3
2R	14103866	2R_14103866_SNP [dm3] 2R_18216361_SNP [dm6]	A	G	2.734e^-4	1	INTERGENIC
X	19737547	X_19737547_SNP [dm3] X_19843514_SNP [dm6]	C	G	2.739e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	2.746e^-4	1	SYNONYMOUS_CODING CG15210 INTRON sbr
2R	3508190	2R_3508190_SNP [dm3] 2R_7620685_SNP [dm6]	A	G	2.758e^-4	1	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	2.759e^-4	1	INTRON CG17834	TF binding site mE1_TFBS_HSA
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	2.779e^-4	1	INTERGENIC
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	2.791e^-4	1	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2R	8922177	2R_8922177_SNP [dm3] 2R_13034672_SNP [dm6]	G	C	2.793e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18132765	2L_18132765_SNP [dm3] 2L_18132765_SNP [dm6]	T	C	2.798e^-4	1	INTRON kel
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	2.799e^-4	1	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	16972194	X_16972194_DEL [dm3] X_17078161_DEL [dm6]	TTTT	T	2.801e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
2L	4847184	2L_4847184_SNP [dm3] 2L_4847184_SNP [dm6]	T	C	2.802e^-4	1	UTR_5_PRIME mxt UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	2.803e^-4	1	DOWNSTREAM CG14089 INTRON CG14086
2R	15769112	2R_15769112_DEL [dm3] 2R_19881607_DEL [dm6]	TTT	T	2.827e^-4	1	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	2.831e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	14141762	3L_14141762_SNP [dm3] 3L_14148662_SNP [dm6]	C	T	2.844e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	8342949	2R_8342949_SNP [dm3] 2R_12455444_SNP [dm6]	G	T	2.859e^-4	1	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22219015	3R_22219015_SNP [dm3] 3R_26393293_SNP [dm6]	T	A	2.894e^-4	1	INTERGENIC
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	2.895e^-4	1	UTR_3_PRIME CG17839
X	3861424	X_3861424_INS [dm3] X_3967391_INS [dm6]	A	ACACA	2.897e^-4	1	SPLICE_SITE_REGION CG6428 INTRON CG6428
3L	14419024	3L_14419024_SNP [dm3] 3L_14425924_SNP [dm6]	C	G	2.899e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	7375228	2R_7375228_SNP [dm3] 2R_11487723_SNP [dm6]	T	C	2.915e^-4	1	INTRON inv
3L	1584150	3L_1584150_SNP [dm3] 3L_1584150_SNP [dm6]	A	T	2.916e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
2R	16329169	2R_16329169_SNP [dm3] 2R_20441664_SNP [dm6]	T	A	2.920e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2R	12090481	2R_12090481_SNP [dm3] 2R_16202976_SNP [dm6]	T	A	2.921e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	3319026	2R_3319026_SNP [dm3] 2R_7431521_SNP [dm6]	A	C	2.926e^-4	1	DOWNSTREAM CR44204 INTRON so	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	15625903	3L_15625903_INS [dm3] 3L_15632803_INS [dm6]	T	TT	2.930e^-4	1	SPLICE_SITE_REGION comm3 UTR_5_PRIME comm3 UPSTREAM comm3 INTRON comm3
3R	17755607	3R_17755607_SNP [dm3] 3R_21929885_SNP [dm6]	A	G	2.930e^-4	1	INTERGENIC
3R	18063138	3R_18063138_SNP [dm3] 3R_22237416_SNP [dm6]	C	T	2.933e^-4	1	INTRON SKIP
3L	10994091	3L_10994091_SNP [dm3] 3L_11000991_SNP [dm6]	A	C	2.933e^-4	1	DOWNSTREAM snoRNA:Me18S-G962 INTRON klu
3R	22530137	3R_22530137_SNP [dm3] 3R_26704415_SNP [dm6]	A	G	2.940e^-4	1	INTRON amon
3R	14510803	3R_14510803_SNP [dm3] 3R_18685081_SNP [dm6]	T	A	2.946e^-4	1	UTR_3_PRIME CG7708
3R	25288119	3R_25288119_SNP [dm3] 3R_29462397_SNP [dm6]	G	A	2.960e^-4	1	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4300983	2R_4300983_SNP [dm3] 2R_8413478_SNP [dm6]	C	T	2.960e^-4	1	INTERGENIC
2L	13089226	2L_13089226_SNP [dm3] 2L_13089226_SNP [dm6]	T	A	2.963e^-4	1	UPSTREAM CR44197 INTERGENIC
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	2.967e^-4	1	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	2.978e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10114753	3R_10114753_SNP [dm3] 3R_14289031_SNP [dm6]	G	T	2.978e^-4	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20162608	2R_20162608_INS [dm3] 2R_24275085_INS [dm6]	A	AA	3.000e^-4	1	UPSTREAM nvy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	3.010e^-4	1	INTRON CG13698
X	2755733	X_2755733_INS [dm3] X_2861700_INS [dm6]	T	TGGGTGATGCGGCTGCCGAG...	3.022e^-4	1	INTRON kirre
3R	22901013	3R_22901013_SNP [dm3] 3R_27075291_SNP [dm6]	T	A	3.023e^-4	1	UPSTREAM CG14257 INTERGENIC
3L	13311097	3L_13311097_SNP [dm3] 3L_13317997_SNP [dm6]	C	T	3.030e^-4	1	INTERGENIC
2R	8922117	2R_8922117_SNP [dm3] 2R_13034612_SNP [dm6]	A	T	3.034e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	5602156	3R_5602156_SNP [dm3] 3R_9776434_SNP [dm6]	T	C	3.043e^-4	1	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7375425	2R_7375425_SNP [dm3] 2R_11487920_SNP [dm6]	G	T	3.054e^-4	1	INTRON inv
2L	18121470	2L_18121470_SNP [dm3] 2L_18121470_SNP [dm6]	C	T	3.069e^-4	1	INTRON CG5758
3L	4050761	3L_4050761_SNP [dm3] 3L_4050761_SNP [dm6]	A	G	3.072e^-4	1	INTRON CG1136	TF binding site BDTNP1_TFBS_sna
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	3.076e^-4	1	INTRON bbg
X	20030360	X_20030360_SNP [dm3] X_20136327_SNP [dm6]	G	C	3.086e^-4	1	NON_SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
2L	4456741	2L_4456741_SNP [dm3] 2L_4456741_SNP [dm6]	T	C	3.093e^-4	1	UTR_5_PRIME Gs1l DOWNSTREAM RpL27A & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	9014482	2L_9014482_SNP [dm3] 2L_9014482_SNP [dm6]	T	C	3.103e^-4	1	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
X	2998649	X_2998649_SNP [dm3] X_3104616_SNP [dm6]	A	G	3.114e^-4	1	INTRON kirre
X	13982134	X_13982134_SNP [dm3] X_14088101_SNP [dm6]	G	A	3.130e^-4	1	INTERGENIC
3L	15701737	3L_15701737_SNP [dm3] 3L_15708637_SNP [dm6]	T	C	3.134e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	3.139e^-4	1	INTRON Eip93F
3R	5609532	3R_5609532_SNP [dm3] 3R_9783810_SNP [dm6]	G	A	3.147e^-4	1	UTR_3_PRIME MtnA UPSTREAM CG8500 DOWNSTREAM CG12947
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	3.157e^-4	1	INTRON CG9541
3R	22988459	3R_22988459_SNP [dm3] 3R_27162737_SNP [dm6]	T	C	3.158e^-4	1	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3L	1583967	3L_1583967_SNP [dm3] 3L_1583967_SNP [dm6]	C	T	3.165e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
X	13983077	X_13983077_SNP [dm3] X_14089044_SNP [dm6]	C	A	3.176e^-4	1	INTERGENIC
3R	22515239	3R_22515239_SNP [dm3] 3R_26689517_SNP [dm6]	G	T	3.182e^-4	1	INTERGENIC
3R	19973900	3R_19973900_SNP [dm3] 3R_24148178_SNP [dm6]	A	T	3.186e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
3R	15100018	3R_15100018_SNP [dm3] 3R_19274296_SNP [dm6]	A	T	3.196e^-4	1	INTERGENIC
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	3.217e^-4	1	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	1466202	3L_1466202_SNP [dm3] 3L_1466202_SNP [dm6]	T	C	3.225e^-4	1	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	3.226e^-4	1	INTRON HDAC4
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	3.230e^-4	1	INTRON cpo
3R	26009157	3R_26009157_SNP [dm3] 3R_30183435_SNP [dm6]	A	T	3.235e^-4	1	DOWNSTREAM CR44262 INTERGENIC
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	3.236e^-4	1	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
X	18414675	X_18414675_SNP [dm3] X_18520642_SNP [dm6]	T	C	3.240e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
2L	7987628	2L_7987628_SNP [dm3] 2L_7987628_SNP [dm6]	A	T	3.244e^-4	1	UTR_3_PRIME pes DOWNSTREAM CG7231	TF binding site mE1_TFBS_cad
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	3.246e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	3.246e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	3.246e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	22530140	3R_22530140_INS [dm3] 3R_26704418_INS [dm6]	A	AA	3.254e^-4	1	INTRON amon
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	3.255e^-4	1	INTRON alph
2R	8922194	2R_8922194_SNP [dm3] 2R_13034689_SNP [dm6]	G	T	3.255e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14080065	3R_14080065_SNP [dm3] 3R_18254343_SNP [dm6]	T	C	3.263e^-4	1	INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
3R	5589428	3R_5589428_SNP [dm3] 3R_9763706_SNP [dm6]	A	C	3.279e^-4	1	UTR_5_PRIME CG8478 UPSTREAM CG8478 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	15254318	3L_15254318_INS [dm3] 3L_15261218_INS [dm6]	T	TAAATCTAT	3.285e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17755608	3R_17755608_SNP [dm3] 3R_21929886_SNP [dm6]	A	C	3.296e^-4	1	INTERGENIC
3R	18343321	3R_18343321_SNP [dm3] 3R_22517599_SNP [dm6]	T	A	3.300e^-4	1	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	3.303e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	3.305e^-4	1	INTRON spg
2R	11907864	2R_11907864_SNP [dm3] 2R_16020359_SNP [dm6]	T	C	3.309e^-4	1	INTRON CG8399
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	3.314e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	3.333e^-4	1	INTRON fas
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	3.345e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	13638071	3R_13638071_SNP [dm3] 3R_17812349_SNP [dm6]	C	T	3.348e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	25823013	3R_25823013_SNP [dm3] 3R_29997291_SNP [dm6]	T	G	3.353e^-4	1	SYNONYMOUS_CODING CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13983653	X_13983653_SNP [dm3] X_14089620_SNP [dm6]	A	T	3.357e^-4	1	INTERGENIC
3L	5722080	3L_5722080_SNP [dm3] 3L_5728980_SNP [dm6]	G	C	3.360e^-4	1	INTRON sif
2L	7769235	2L_7769235_SNP [dm3] 2L_7769235_SNP [dm6]	A	G	3.390e^-4	1	INTRON CG7191
3L	8799241	3L_8799241_SNP [dm3] 3L_8806141_SNP [dm6]	G	A	3.398e^-4	1	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19399080	2L_19399080_SNP [dm3] 2L_19399080_SNP [dm6]	T	A	3.400e^-4	1	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18154654	3L_18154654_SNP [dm3] 3L_18161554_SNP [dm6]	C	T	3.410e^-4	1	INTRON CG13699
2L	16197268	2L_16197268_SNP [dm3] 2L_16197268_SNP [dm6]	G	A	3.410e^-4	1	INTERGENIC
3L	17230888	3L_17230888_SNP [dm3] 3L_17237788_SNP [dm6]	A	T	3.416e^-4	1	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	3.428e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15328077	2R_15328077_SNP [dm3] 2R_19440572_SNP [dm6]	T	G	3.433e^-4	1	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	6581630	2L_6581630_SNP [dm3] 2L_6581630_SNP [dm6]	C	T	3.440e^-4	1	INTRON CG11319
3R	26096552	3R_26096552_SNP [dm3] 3R_30270830_SNP [dm6]	G	T	3.444e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	3.470e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	3.473e^-4	1	SYNONYMOUS_CODING Ir94e
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	3.484e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	3.484e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	11440517	2L_11440517_SNP [dm3] 2L_11440517_SNP [dm6]	A	C	3.488e^-4	1	INTRON salm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22219018	3R_22219018_SNP [dm3] 3R_26393296_SNP [dm6]	T	G	3.492e^-4	1	INTERGENIC
3R	1640418	3R_1640418_SNP [dm3] 3R_5814696_SNP [dm6]	T	A	3.493e^-4	1	UTR_5_PRIME CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad
3R	18776673	3R_18776673_SNP [dm3] 3R_22950951_SNP [dm6]	C	T	3.513e^-4	1	INTRON klg
3R	21138092	3R_21138092_SNP [dm3] 3R_25312370_SNP [dm6]	G	A	3.537e^-4	1	SYNONYMOUS_CODING CG31087
X	21896150	X_21896150_SNP [dm3] X_22494314_SNP [dm6]	A	G	3.542e^-4	1	INTRON l_1_G0196
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	3.543e^-4	1	INTRON stan
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	3.557e^-4	1	INTRON msi
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	3.571e^-4	1	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2843390	2L_2843390_SNP [dm3] 2L_2843390_SNP [dm6]	C	G	3.578e^-4	1	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3L	9424128	3L_9424128_SNP [dm3] 3L_9431028_SNP [dm6]	C	T	3.579e^-4	1	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	19689514	3R_19689514_SNP [dm3] 3R_23863792_SNP [dm6]	C	T	3.581e^-4	1	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3R	16034288	3R_16034288_SNP [dm3] 3R_20208566_SNP [dm6]	G	T	3.619e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	3.621e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	9033206	2R_9033206_SNP [dm3] 2R_13145701_SNP [dm6]	C	A	3.627e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3L	1454151	3L_1454151_SNP [dm3] 3L_1454151_SNP [dm6]	A	G	3.629e^-4	1	INTRON Ptp61F
2R	18123839	2R_18123839_SNP [dm3] 2R_22236334_SNP [dm6]	T	A	3.637e^-4	1	EXON CR44755
2R	7200898	2R_7200898_SNP [dm3] 2R_11313393_SNP [dm6]	C	T	3.640e^-4	1	INTRON nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16339657	3L_16339657_SNP [dm3] 3L_16346557_SNP [dm6]	A	T	3.644e^-4	1	INTRON CG33257
X	16972204	X_16972204_SNP [dm3] X_17078171_SNP [dm6]	A	G	3.646e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
X	16972215	X_16972215_INS [dm3] X_17078182_INS [dm6]	T	TATGCATT	3.646e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	3.649e^-4	1	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9082750	3L_9082750_SNP [dm3] 3L_9089650_SNP [dm6]	A	G	3.660e^-4	1	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	19228775	X_19228775_SNP [dm3] X_19334742_SNP [dm6]	C	T	3.663e^-4	1	INTRON nAChRalpha7
3R	23793018	3R_23793018_SNP [dm3] 3R_27967296_SNP [dm6]	A	G	3.669e^-4	1	SYNONYMOUS_CODING betaTub97EF DOWNSTREAM CG4849
2L	2835876	2L_2835876_SNP [dm3] 2L_2835876_SNP [dm6]	A	T	3.679e^-4	1	DOWNSTREAM CG3119 INTRON CG3119
2R	9937866	2R_9937866_INS [dm3] 2R_14050361_INS [dm6]	T	TT	3.693e^-4	1	INTRON mam
2R	18677781	2R_18677781_SNP [dm3] 2R_22790276_SNP [dm6]	A	C	3.695e^-4	1	INTRON CG42260
3R	22524189	3R_22524189_SNP [dm3] 3R_26698467_SNP [dm6]	A	T	3.718e^-4	1	UTR_3_PRIME amon
2L	1952013	2L_1952013_SNP [dm3] 2L_1952013_SNP [dm6]	G	C	3.734e^-4	1	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	3.734e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	18152506	2L_18152506_SNP [dm3] 2L_18152506_SNP [dm6]	T	G	3.740e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	3.743e^-4	1	UTR_3_PRIME CG42741 INTRON twi
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	3.749e^-4	1	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	18418840	3R_18418840_DEL [dm3] 3R_22593118_DEL [dm6]	GGG	G	3.761e^-4	1	INTRON Efa6	TF binding site mE1_TFBS_chinmo
3L	14418952	3L_14418952_SNP [dm3] 3L_14425852_SNP [dm6]	C	G	3.766e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	19650139	3R_19650139_SNP [dm3] 3R_23824417_SNP [dm6]	T	C	3.767e^-4	1	DOWNSTREAM CR43285 INTRON CG34355
X	8295049	X_8295049_SNP [dm3] X_8401016_SNP [dm6]	G	A	3.780e^-4	1	SYNONYMOUS_CODING CG10555	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16716279	3L_16716279_SNP [dm3] 3L_16723179_SNP [dm6]	A	T	3.789e^-4	1	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad
3L	2152481	3L_2152481_SNP [dm3] 3L_2152481_SNP [dm6]	A	C	3.793e^-4	1	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	16400952	X_16400952_SNP [dm3] X_16506919_SNP [dm6]	C	G	3.794e^-4	1	INTRON para
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	3.796e^-4	1	INTRON a
X	12845212	X_12845212_SNP [dm3] X_12951179_SNP [dm6]	T	C	3.797e^-4	1	UTR_3_PRIME hec DOWNSTREAM fne
3L	19268169	3L_19268169_SNP [dm3] 3L_19275069_SNP [dm6]	A	C	3.797e^-4	1	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	3.825e^-4	1	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	20839824	3R_20839824_SNP [dm3] 3R_25014102_SNP [dm6]	G	A	3.826e^-4	1	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20839829	3R_20839829_SNP [dm3] 3R_25014107_SNP [dm6]	C	T	3.851e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1585254	3L_1585254_SNP [dm3] 3L_1585254_SNP [dm6]	G	A	3.853e^-4	1	INTRON CG13917
X	19166960	X_19166960_INS [dm3] X_19272927_INS [dm6]	T	TTCG	3.880e^-4	1	UTR_3_PRIME Vav DOWNSTREAM Vav & 1 other	TF binding site mE1_TFBS_zfh1
3R	14969788	3R_14969788_DEL [dm3] 3R_19144066_DEL [dm6]	GAACG	G	3.886e^-4	1	INTRON Ppcs
3L	16628647	3L_16628647_SNP [dm3] 3L_16635547_SNP [dm6]	G	A	3.896e^-4	1	INTRON Abl
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	3.898e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13465398	3L_13465398_SNP [dm3] 3L_13472298_SNP [dm6]	A	G	3.899e^-4	1	INTRON CG10089
X	2755726	X_2755726_SNP [dm3] X_2861693_SNP [dm6]	G	T	3.901e^-4	1	INTRON kirre
3L	1585195	3L_1585195_SNP [dm3] 3L_1585195_SNP [dm6]	G	A	3.902e^-4	1	INTRON CG13917
3R	15156112	3R_15156112_DEL [dm3] 3R_19330390_DEL [dm6]	GAGTAGC	A	3.904e^-4	1	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1588334	3L_1588334_SNP [dm3] 3L_1588334_SNP [dm6]	A	C	3.907e^-4	1	INTRON CG13917
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	3.914e^-4	1	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	3.921e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
X	20563824	X_20563824_SNP [dm3] X_20692797_SNP [dm6]	T	C	3.924e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	715066	2L_715066_SNP [dm3] 2L_715066_SNP [dm6]	A	G	3.931e^-4	1	UPSTREAM ds EXON CR44988	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	4459588	2R_4459588_SNP [dm3] 2R_8572083_SNP [dm6]	A	G	3.946e^-4	1	UTR_3_PRIME Cyp6a13
3L	10689925	3L_10689925_SNP [dm3] 3L_10696825_SNP [dm6]	A	C	3.957e^-4	1	UTR_5_PRIME NijA
3R	16033923	3R_16033923_SNP [dm3] 3R_20208201_SNP [dm6]	A	G	3.962e^-4	1	UTR_3_PRIME CG17199 INTRON Nlg4
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	3.966e^-4	1	DOWNSTREAM CG3982 INTRON CG3967
3L	1793737	3L_1793737_SNP [dm3] 3L_1793737_SNP [dm6]	G	A	3.977e^-4	1	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	3.987e^-4	1	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	8922235	2R_8922235_SNP [dm3] 2R_13034730_SNP [dm6]	G	A	4.005e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	15227390	3L_15227390_SNP [dm3] 3L_15234290_SNP [dm6]	C	T	4.014e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15812539	3R_15812539_SNP [dm3] 3R_19986817_SNP [dm6]	G	T	4.014e^-4	1	INTRON Hs6st
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	4.020e^-4	1	SYNONYMOUS_CODING CG9850
2R	17097943	2R_17097943_SNP [dm3] 2R_21210438_SNP [dm6]	A	G	4.021e^-4	1	NON_SYNONYMOUS_CODING Glycogenin UTR_3_PRIME Glycogenin UPSTREAM CG44245 DOWNSTREAM Glycogenin INTRON CG44245
2L	16236466	2L_16236466_SNP [dm3] 2L_16236466_SNP [dm6]	T	C	4.026e^-4	1	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
X	1171882	X_1171882_SNP [dm3] X_1277849_SNP [dm6]	T	A	4.028e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	17731421	3R_17731421_SNP [dm3] 3R_21905699_SNP [dm6]	C	G	4.030e^-4	1	INTRON CG6678	TF binding site mE1_TFBS_chinmo
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	4.044e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19618853	X_19618853_SNP [dm3] X_19724820_SNP [dm6]	G	A	4.056e^-4	1	SYNONYMOUS_CODING CG12531	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14419064	3L_14419064_SNP [dm3] 3L_14425964_SNP [dm6]	T	A	4.059e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc
2R	17153574	2R_17153574_SNP [dm3] 2R_21266069_SNP [dm6]	A	G	4.065e^-4	1	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
2R	3508454	2R_3508454_SNP [dm3] 2R_7620949_SNP [dm6]	C	T	4.070e^-4	1	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18151360	2L_18151360_SNP [dm3] 2L_18151360_SNP [dm6]	T	C	4.074e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	4.077e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5161395	2L_5161395_SNP [dm3] 2L_5161395_SNP [dm6]	C	T	4.079e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	4.083e^-4	1	INTERGENIC
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	4.100e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18190297	3L_18190297_SNP [dm3] 3L_18197197_SNP [dm6]	A	C	4.103e^-4	1	DOWNSTREAM CR45234 INTERGENIC
2R	8802629	2R_8802629_SNP [dm3] 2R_12915124_SNP [dm6]	G	A	4.107e^-4	1	UPSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	9676016	3L_9676016_SNP [dm3] 3L_9682916_SNP [dm6]	A	G	4.118e^-4	1	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19974117	3R_19974117_SNP [dm3] 3R_24148395_SNP [dm6]	T	C	4.133e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	4.134e^-4	1	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
3R	21693195	3R_21693195_SNP [dm3] 3R_25867473_SNP [dm6]	T	C	4.134e^-4	1	INTRON CG5890
3R	18116843	3R_18116843_SNP [dm3] 3R_22291121_SNP [dm6]	T	G	4.138e^-4	1	INTRON SKIP
X	12141655	X_12141655_SNP [dm3] X_12247622_SNP [dm6]	C	G	4.139e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	19037616	2R_19037616_SNP [dm3] 2R_23150093_SNP [dm6]	C	G	4.140e^-4	1	INTERGENIC
2L	4413397	2L_4413397_SNP [dm3] 2L_4413397_SNP [dm6]	A	G	4.154e^-4	1	INTRON CG15431
3L	8396430	3L_8396430_SNP [dm3] 3L_8403330_SNP [dm6]	C	T	4.155e^-4	1	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057
3R	5494787	3R_5494787_SNP [dm3] 3R_9669065_SNP [dm6]	T	C	4.160e^-4	1	NON_SYNONYMOUS_CODING CG9492
2R	17348585	2R_17348585_DEL [dm3] 2R_21461080_DEL [dm6]	AA	A	4.161e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
2R	4199856	2R_4199856_DEL [dm3] 2R_8312351_DEL [dm6]	AATA	A	4.165e^-4	1	DOWNSTREAM CR44450 INTERGENIC
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	4.176e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17782460	3R_17782460_SNP [dm3] 3R_21956738_SNP [dm6]	G	C	4.180e^-4	1	INTRON Eip93F
3L	9685859	3L_9685859_SNP [dm3] 3L_9692759_SNP [dm6]	T	C	4.186e^-4	1	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	16230365	2L_16230365_SNP [dm3] 2L_16230365_SNP [dm6]	A	T	4.188e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	10255162	2R_10255162_SNP [dm3] 2R_14367657_SNP [dm6]	A	G	4.193e^-4	1	UPSTREAM CG34443 DOWNSTREAM CG34184 INTRON CG34442
X	2998646	X_2998646_SNP [dm3] X_3104613_SNP [dm6]	C	T	4.201e^-4	1	INTRON kirre
3R	21237668	3R_21237668_SNP [dm3] 3R_25411946_SNP [dm6]	C	T	4.201e^-4	1	INTRON Fur1
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	4.201e^-4	1	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21147043	3R_21147043_SNP [dm3] 3R_25321321_SNP [dm6]	T	A	4.213e^-4	1	NON_SYNONYMOUS_CODING CG10562
3R	6991475	3R_6991475_SNP [dm3] 3R_11165753_SNP [dm6]	T	G	4.240e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
2R	19277488	2R_19277488_SNP [dm3] 2R_23389965_SNP [dm6]	A	T	4.245e^-4	1	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2530432	3L_2530432_DEL [dm3] 3L_2530432_DEL [dm6]	TTT	T	4.249e^-4	1	INTRON Spn
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	4.259e^-4	1	INTRON CG13917
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	4.273e^-4	1	INTERGENIC
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	4.274e^-4	1	UPSTREAM CG11112 INTRON Eaf
3R	14079777	3R_14079777_SNP [dm3] 3R_18254055_SNP [dm6]	G	T	4.279e^-4	1	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
2L	10251725	2L_10251725_SNP [dm3] 2L_10251725_SNP [dm6]	G	A	4.280e^-4	1	UPSTREAM Ror DOWNSTREAM CG31717 INTERGENIC
2L	17858853	2L_17858853_SNP [dm3] 2L_17858853_SNP [dm6]	A	G	4.281e^-4	1	INTRON CadN2
X	8998205	X_8998205_SNP [dm3] X_9104172_SNP [dm6]	C	T	4.282e^-4	1	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	8529492	2L_8529492_SNP [dm3] 2L_8529492_SNP [dm6]	T	A	4.284e^-4	1	UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other INTRON CG17834	TF binding site BDTNP1_TFBS_prd
2R	10943216	2R_10943216_SNP [dm3] 2R_15055711_SNP [dm6]	G	T	4.288e^-4	1	INTRON CG33467
2R	14879834	2R_14879834_SNP [dm3] 2R_18992329_SNP [dm6]	G	C	4.300e^-4	1	INTRON tn
2L	4413400	2L_4413400_SNP [dm3] 2L_4413400_SNP [dm6]	A	T	4.326e^-4	1	INTRON CG15431
2L	3172785	2L_3172785_SNP [dm3] 2L_3172785_SNP [dm6]	A	G	4.327e^-4	1	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
2R	3632204	2R_3632204_SNP [dm3] 2R_7744699_SNP [dm6]	C	T	4.333e^-4	1	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	4.344e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24960104	3R_24960104_SNP [dm3] 3R_29134382_SNP [dm6]	C	T	4.345e^-4	1	INTRON Vha100-1
2L	10420837	2L_10420837_SNP [dm3] 2L_10420837_SNP [dm6]	C	T	4.355e^-4	1	SYNONYMOUS_CODING pie DOWNSTREAM RfC3
2L	18159156	2L_18159156_INS [dm3] 2L_18159156_INS [dm6]	A	ACTTAAGTATTTTACTATTC...	4.358e^-4	1	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
3L	15908842	3L_15908842_INS [dm3] 3L_15915742_INS [dm6]	A	ATAA	4.359e^-4	1	INTRON sff
2L	8071926	2L_8071926_SNP [dm3] 2L_8071926_SNP [dm6]	T	A	4.361e^-4	1	UTR_3_PRIME MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	4.377e^-4	1	INTRON a
3R	1595516	3R_1595516_SNP [dm3] 3R_5769794_SNP [dm6]	G	A	4.379e^-4	1	INTRON CG2082	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18917334	3L_18917334_SNP [dm3] 3L_18924234_SNP [dm6]	A	G	4.389e^-4	1	SYNONYMOUS_CODING CG32204 UPSTREAM CG43049
3R	14969796	3R_14969796_SNP [dm3] 3R_19144074_SNP [dm6]	G	C	4.400e^-4	1	INTRON Ppcs
3R	14969810	3R_14969810_SNP [dm3] 3R_19144088_SNP [dm6]	G	C	4.400e^-4	1	INTRON Ppcs
X	3861865	X_3861865_SNP [dm3] X_3967832_SNP [dm6]	T	C	4.411e^-4	1	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
3R	6965390	3R_6965390_SNP [dm3] 3R_11139668_SNP [dm6]	T	C	4.414e^-4	1	UTR_3_PRIME CG4706
3L	1813285	3L_1813285_SNP [dm3] 3L_1813285_SNP [dm6]	G	A	4.421e^-4	1	INTRON GV1
3R	22193000	3R_22193000_SNP [dm3] 3R_26367278_SNP [dm6]	G	C	4.437e^-4	1	INTERGENIC
3R	22193002	3R_22193002_SNP [dm3] 3R_26367280_SNP [dm6]	G	C	4.437e^-4	1	INTERGENIC
3R	18055161	3R_18055161_SNP [dm3] 3R_22229439_SNP [dm6]	T	A	4.440e^-4	1	INTRON SKIP
3R	10271552	3R_10271552_SNP [dm3] 3R_14445830_SNP [dm6]	G	A	4.470e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	4.487e^-4	1	INTRON fas
2R	16024073	2R_16024073_SNP [dm3] 2R_20136568_SNP [dm6]	T	G	4.491e^-4	1	UPSTREAM CR44635 DOWNSTREAM CR44634 INTERGENIC
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	4.494e^-4	1	INTRON CG7120
2L	9019587	2L_9019587_SNP [dm3] 2L_9019587_SNP [dm6]	A	T	4.503e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10079917	X_10079917_DEL [dm3] X_10185884_DEL [dm6]	CACAC	C	4.503e^-4	1	INTRON CG43902 & 1 other
2L	8658503	2L_8658503_SNP [dm3] 2L_8658503_SNP [dm6]	A	T	4.503e^-4	1	INTRON Sema-1a
3L	19254960	3L_19254960_SNP [dm3] 3L_19261860_SNP [dm6]	G	A	4.507e^-4	1	SYNONYMOUS_CODING Bet1 DOWNSTREAM CR45210 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	4.536e^-4	1	INTRON Rbp6
2R	11030632	2R_11030632_SNP [dm3] 2R_15143127_SNP [dm6]	T	C	4.539e^-4	1	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	4.548e^-4	1	INTRON RunxB
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	4.551e^-4	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9019572	2L_9019572_SNP [dm3] 2L_9019572_SNP [dm6]	T	A	4.559e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	4.571e^-4	1	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
3R	14081436	3R_14081436_SNP [dm3] 3R_18255714_SNP [dm6]	C	T	4.574e^-4	1	SYNONYMOUS_CODING moi UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	4.574e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	20759308	3L_20759308_SNP [dm3] 3L_20766208_SNP [dm6]	T	C	4.582e^-4	1	INTERGENIC
3R	22147072	3R_22147072_SNP [dm3] 3R_26321350_SNP [dm6]	A	T	4.587e^-4	1	INTRON CG33970	TF binding site mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
2R	13016725	2R_13016725_SNP [dm3] 2R_17129220_SNP [dm6]	T	C	4.588e^-4	1	SYNONYMOUS_CODING Cda9
2R	10943206	2R_10943206_SNP [dm3] 2R_15055701_SNP [dm6]	G	A	4.591e^-4	1	INTRON CG33467
2L	4457054	2L_4457054_SNP [dm3] 2L_4457054_SNP [dm6]	A	G	4.592e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC
X	19511963	X_19511963_SNP [dm3] X_19617930_SNP [dm6]	C	T	4.594e^-4	1	UTR_5_PRIME CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4300964	2R_4300964_SNP [dm3] 2R_8413459_SNP [dm6]	C	G	4.604e^-4	1	INTERGENIC
2L	12470453	2L_12470453_SNP [dm3] 2L_12470453_SNP [dm6]	A	C	4.617e^-4	1	INTRON bun
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	4.623e^-4	1	INTRON CG1461
2R	19403808	2R_19403808_SNP [dm3] 2R_23516285_SNP [dm6]	T	C	4.627e^-4	1	INTERGENIC
X	8875168	X_8875168_SNP [dm3] X_8981135_SNP [dm6]	C	T	4.627e^-4	1	INTRON rdgA & 1 other
2L	7012380	2L_7012380_SNP [dm3] 2L_7012380_SNP [dm6]	A	C	4.628e^-4	1	SYNONYMOUS_CODING CG43321
3L	13231561	3L_13231561_DEL [dm3] 3L_13238461_DEL [dm6]	AA	A	4.629e^-4	1	INTRON caps
3R	5586888	3R_5586888_SNP [dm3] 3R_9761166_SNP [dm6]	A	C	4.637e^-4	1	UTR_3_PRIME CG8417 DOWNSTREAM Snap24
3L	14418933	3L_14418933_SNP [dm3] 3L_14425833_SNP [dm6]	T	A	4.653e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14371933	3L_14371933_SNP [dm3] 3L_14378833_SNP [dm6]	A	G	4.655e^-4	1	INTERGENIC
3L	14496512	3L_14496512_SNP [dm3] 3L_14503412_SNP [dm6]	G	T	4.660e^-4	1	INTRON bbg
3L	677735	3L_677735_SNP [dm3] 3L_677735_SNP [dm6]	T	C	4.666e^-4	1	DOWNSTREAM CG17129 INTERGENIC
3R	25186780	3R_25186780_SNP [dm3] 3R_29361058_SNP [dm6]	G	C	4.686e^-4	1	INTERGENIC
2R	17042675	2R_17042675_SNP [dm3] 2R_21155170_SNP [dm6]	T	G	4.696e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12051360	3R_12051360_DEL [dm3] 3R_16225638_DEL [dm6]	GCTGAG	G	4.703e^-4	1	UPSTREAM tara INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	4.703e^-4	1	DOWNSTREAM CG31785 INTRON CG5758
3L	12089928	3L_12089928_SNP [dm3] 3L_12096828_SNP [dm6]	G	C	4.707e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2159692	3L_2159692_INS [dm3] 3L_2159692_INS [dm6]	C	GA	4.715e^-4	1	INTRON CG15822	TF binding site mE1_TFBS_inv
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	4.729e^-4	1	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	10035790	3R_10035790_SNP [dm3] 3R_14210068_SNP [dm6]	A	C	4.733e^-4	1	INTRON Dop1R1
3L	8798718	3L_8798718_SNP [dm3] 3L_8805618_SNP [dm6]	C	T	4.746e^-4	1	DOWNSTREAM CG13312 INTRON CG34427	TF binding site mE1_TFBS_chinmo
3L	12508494	3L_12508494_SNP [dm3] 3L_12515394_SNP [dm6]	T	A	4.763e^-4	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	4.772e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5502637	3R_5502637_SNP [dm3] 3R_9676915_SNP [dm6]	C	T	4.772e^-4	1	SYNONYMOUS_CODING CG8358	TF binding site mE1_TFBS_sens
3R	22091445	3R_22091445_SNP [dm3] 3R_26265723_SNP [dm6]	C	A	4.773e^-4	1	INTRON CG6154
X	10738673	X_10738673_SNP [dm3] X_10844640_SNP [dm6]	C	T	4.781e^-4	1	NON_SYNONYMOUS_CODING CG32669 INTRON sbr	TF binding site mE1_TFBS_sens
2R	12764640	2R_12764640_SNP [dm3] 2R_16877135_SNP [dm6]	A	G	4.781e^-4	1	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17062031	2R_17062031_SNP [dm3] 2R_21174526_SNP [dm6]	C	T	4.788e^-4	1	UPSTREAM Pu DOWNSTREAM Xpd INTERGENIC
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	4.789e^-4	1	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	4.789e^-4	1	SYNONYMOUS_CODING Gfrl
3R	24085041	3R_24085041_SNP [dm3] 3R_28259319_SNP [dm6]	T	C	4.796e^-4	1	INTERGENIC
2R	8922251	2R_8922251_SNP [dm3] 2R_13034746_SNP [dm6]	T	A	4.799e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	4.800e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25437387	3R_25437387_SNP [dm3] 3R_29611665_SNP [dm6]	A	T	4.802e^-4	1	INTRON alph
2L	4457009	2L_4457009_SNP [dm3] 2L_4457009_SNP [dm6]	G	C	4.808e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	4.809e^-4	1	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	16207603	3R_16207603_INS [dm3] 3R_20381881_INS [dm6]	A	AGCCCATAAGTTAA...	4.815e^-4	1	INTRON Gfrl
3R	16207631	3R_16207631_INS [dm3] 3R_20381909_INS [dm6]	T	TCAA	4.815e^-4	1	INTRON Gfrl
2L	17316616	2L_17316616_SNP [dm3] 2L_17316616_SNP [dm6]	C	G	4.826e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3470929	2L_3470929_SNP [dm3] 2L_3470929_SNP [dm6]	T	C	4.827e^-4	1	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238
2L	3215286	2L_3215286_SNP [dm3] 2L_3215286_SNP [dm6]	T	C	4.830e^-4	1	INTERGENIC
3L	10625884	3L_10625884_SNP [dm3] 3L_10632784_SNP [dm6]	A	T	4.831e^-4	1	SYNONYMOUS_CODING hay INTRON CG34001	TF binding site mE1_TFBS_sens
3R	22675432	3R_22675432_SNP [dm3] 3R_26849710_SNP [dm6]	G	C	4.834e^-4	1	INTRON Lerp
3L	12435420	3L_12435420_SNP [dm3] 3L_12442320_SNP [dm6]	C	T	4.836e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	4.839e^-4	1	INTRON CG14521
3L	15287505	3L_15287505_DEL [dm3] 3L_15294405_DEL [dm6]	GGGCAAATGCAGAAATG...	G	4.855e^-4	1	INTERGENIC
3R	12092823	3R_12092823_SNP [dm3] 3R_16267101_SNP [dm6]	G	A	4.859e^-4	1	SYNONYMOUS_CODING Mst89B DOWNSTREAM asun
3R	5601545	3R_5601545_SNP [dm3] 3R_9775823_SNP [dm6]	A	G	4.881e^-4	1	NON_SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
3R	18116838	3R_18116838_SNP [dm3] 3R_22291116_SNP [dm6]	A	C	4.890e^-4	1	INTRON SKIP
2R	13367791	2R_13367791_SNP [dm3] 2R_17480286_SNP [dm6]	T	A	4.892e^-4	1	UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
X	20006115	X_20006115_SNP [dm3] X_20112082_SNP [dm6]	A	C	4.892e^-4	1	INTERGENIC
X	20006116	X_20006116_SNP [dm3] X_20112083_SNP [dm6]	C	A	4.892e^-4	1	INTERGENIC
2L	12321185	2L_12321185_SNP [dm3] 2L_12321185_SNP [dm6]	G	T	4.896e^-4	1	INTERGENIC
3R	17149265	3R_17149265_SNP [dm3] 3R_21323543_SNP [dm6]	G	A	4.897e^-4	1	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	17755639	3R_17755639_SNP [dm3] 3R_21929917_SNP [dm6]	G	C	4.897e^-4	1	INTERGENIC
3R	26414280	3R_26414280_SNP [dm3] 3R_30588558_SNP [dm6]	A	T	4.899e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	4.921e^-4	1	INTRON baz
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	4.923e^-4	1	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4456877	2L_4456877_SNP [dm3] 2L_4456877_SNP [dm6]	A	T	4.927e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	4.935e^-4	1	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2768019	X_2768019_DEL [dm3] X_2873986_DEL [dm6]	CGAGTTTAA	T	4.939e^-4	1	INTRON kirre
X	2768029	X_2768029_SNP [dm3] X_2873996_SNP [dm6]	A	T	4.939e^-4	1	INTRON kirre
2R	11038101	2R_11038101_SNP [dm3] 2R_15150596_SNP [dm6]	C	A	4.943e^-4	1	DOWNSTREAM CG7544 INTERGENIC
X	20867480	X_20867480_SNP [dm3] X_20996453_SNP [dm6]	A	C	4.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	4.945e^-4	1	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18414525	X_18414525_SNP [dm3] X_18520492_SNP [dm6]	C	T	4.947e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	19247012	3L_19247012_SNP [dm3] 3L_19253912_SNP [dm6]	G	A	4.961e^-4	1	UTR_3_PRIME mRpL21 DOWNSTREAM mRpL21
3L	19253082	3L_19253082_SNP [dm3] 3L_19259982_SNP [dm6]	A	C	4.961e^-4	1	UPSTREAM CR45210 INTRON nes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	19255197	3L_19255197_SNP [dm3] 3L_19262097_SNP [dm6]	T	C	4.961e^-4	1	SYNONYMOUS_CODING Bet1 DOWNSTREAM Max	TF binding site mE1_TFBS_HSA
3L	19256093	3L_19256093_SNP [dm3] 3L_19262993_SNP [dm6]	C	T	4.961e^-4	1	SYNONYMOUS_CODING Max UPSTREAM CG9666 & 1 other DOWNSTREAM Bet1	TF binding site mE1_TFBS_cad
3L	19265411	3L_19265411_SNP [dm3] 3L_19272311_SNP [dm6]	C	G	4.961e^-4	1	NON_SYNONYMOUS_CODING CG14085	TF binding site BDTNP1_TFBS_twi
3L	19267477	3L_19267477_DEL [dm3] 3L_19274377_DEL [dm6]	TTTC	A	4.961e^-4	1	DOWNSTREAM CG14085 INTERGENIC	TF binding site mE1_TFBS_cad
3L	19268170	3L_19268170_SNP [dm3] 3L_19275070_SNP [dm6]	G	A	4.961e^-4	1	UPSTREAM CG14086 DOWNSTREAM CG14085 INTERGENIC
2L	5161385	2L_5161385_SNP [dm3] 2L_5161385_SNP [dm6]	G	T	4.963e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7005774	2L_7005774_SNP [dm3] 2L_7005774_SNP [dm6]	T	C	4.970e^-4	1	INTRON uif	TF binding site BDTNP1_TFBS_hb
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	4.976e^-4	1	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8326848	2R_8326848_SNP [dm3] 2R_12439343_SNP [dm6]	G	A	4.978e^-4	1	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	4.981e^-4	1	INTRON spri
2R	10535319	2R_10535319_SNP [dm3] 2R_14647814_SNP [dm6]	G	A	4.989e^-4	1	INTERGENIC
3R	1640396	3R_1640396_SNP [dm3] 3R_5814674_SNP [dm6]	C	T	5.001e^-4	1	START_GAINED CG42675 UTR_5_PRIME CG42675 UPSTREAM CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad
3R	22103949	3R_22103949_DEL [dm3] 3R_26278227_DEL [dm6]	AGTG	A	5.011e^-4	1	INTERGENIC
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	5.013e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	10089317	2L_10089317_SNP [dm3] 2L_10089317_SNP [dm6]	C	T	5.033e^-4	1	INTRON CG44153
2L	12905651	2L_12905651_SNP [dm3] 2L_12905651_SNP [dm6]	C	G	5.042e^-4	1	INTERGENIC
2R	18033646	2R_18033646_SNP [dm3] 2R_22146141_SNP [dm6]	C	T	5.047e^-4	1	INTRON a
X	4840888	X_4840888_SNP [dm3] X_4946855_SNP [dm6]	A	C	5.048e^-4	1	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	5866017	2L_5866017_SNP [dm3] 2L_5866017_SNP [dm6]	T	C	5.051e^-4	1	INTRON rau
2R	6180657	2R_6180657_INS [dm3] 2R_10293152_INS [dm6]	A	AATTGAGTAGC...	5.066e^-4	1	INTRON CAP
X	17956130	X_17956130_SNP [dm3] X_18062097_SNP [dm6]	A	T	5.068e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17922048	X_17922048_SNP [dm3] X_18028015_SNP [dm6]	A	T	5.068e^-4	1	INTRON Sh & 1 other
X	18414671	X_18414671_SNP [dm3] X_18520638_SNP [dm6]	C	T	5.084e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	1617867	3R_1617867_SNP [dm3] 3R_5792145_SNP [dm6]	A	G	5.089e^-4	1	NON_SYNONYMOUS_CODING CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	5.094e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3L	14017838	3L_14017838_SNP [dm3] 3L_14024738_SNP [dm6]	C	T	5.107e^-4	1	SYNONYMOUS_CODING ptip
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	5.108e^-4	1	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
2R	12039752	2R_12039752_SNP [dm3] 2R_16152247_SNP [dm6]	A	T	5.112e^-4	1	INTRON lbk	transposable element FlyBase
X	5394522	X_5394522_SNP [dm3] X_5500489_SNP [dm6]	T	G	5.113e^-4	1	SYNONYMOUS_CODING CG32762 UPSTREAM CG4151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	18032745	2R_18032745_SNP [dm3] 2R_22145240_SNP [dm6]	T	C	5.116e^-4	1	INTRON a
3R	16207630	3R_16207630_SNP [dm3] 3R_20381908_SNP [dm6]	C	T	5.117e^-4	1	INTRON Gfrl
3R	1596269	3R_1596269_DEL [dm3] 3R_5770547_DEL [dm6]	CACCACTTTGTCGC...	C	5.117e^-4	1	INTRON CG2082
X	12290477	X_12290477_SNP [dm3] X_12396444_SNP [dm6]	C	A	5.117e^-4	1	INTERGENIC
2L	513219	2L_513219_SNP [dm3] 2L_513219_SNP [dm6]	G	A	5.130e^-4	1	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3L	8799242	3L_8799242_SNP [dm3] 3L_8806142_SNP [dm6]	T	C	5.133e^-4	1	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2841042	2L_2841042_SNP [dm3] 2L_2841042_SNP [dm6]	T	C	5.135e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
2L	17104662	2L_17104662_SNP [dm3] 2L_17104662_SNP [dm6]	T	A	5.136e^-4	1	UPSTREAM CR45448 INTERGENIC
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	5.142e^-4	1	INTRON CG7120
2L	17308642	2L_17308642_SNP [dm3] 2L_17308642_SNP [dm6]	A	G	5.148e^-4	1	INTERGENIC
2R	11161908	2R_11161908_SNP [dm3] 2R_15274403_SNP [dm6]	C	T	5.148e^-4	1	INTRON Trpm
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	5.158e^-4	1	INTRON bbg
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	5.158e^-4	1	INTRON RunxB
3L	9779611	3L_9779611_SNP [dm3] 3L_9786511_SNP [dm6]	G	C	5.178e^-4	1	DOWNSTREAM CG8177 INTERGENIC
X	2755699	X_2755699_SNP [dm3] X_2861666_SNP [dm6]	T	C	5.192e^-4	1	INTRON kirre
3L	17990179	3L_17990179_SNP [dm3] 3L_17997079_SNP [dm6]	C	T	5.194e^-4	1	INTRON Eip75B
2L	4384423	2L_4384423_SNP [dm3] 2L_4384423_SNP [dm6]	T	C	5.201e^-4	1	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
3R	26009143	3R_26009143_SNP [dm3] 3R_30183421_SNP [dm6]	T	A	5.204e^-4	1	DOWNSTREAM CR44262 INTERGENIC
3L	7886421	3L_7886421_SNP [dm3] 3L_7893321_SNP [dm6]	G	A	5.206e^-4	1	SYNONYMOUS_CODING CG32365
3L	14022550	3L_14022550_SNP [dm3] 3L_14029450_SNP [dm6]	G	A	5.207e^-4	1	UPSTREAM ptip DOWNSTREAM endos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	16722617	X_16722617_SNP [dm3] X_16828584_SNP [dm6]	A	G	5.207e^-4	1	UPSTREAM CG13004 INTRON CG13004
2L	17100509	2L_17100509_SNP [dm3] 2L_17100509_SNP [dm6]	C	T	5.210e^-4	1	INTERGENIC
X	13981350	X_13981350_SNP [dm3] X_14087317_SNP [dm6]	T	C	5.228e^-4	1	INTERGENIC
2L	18151861	2L_18151861_SNP [dm3] 2L_18151861_SNP [dm6]	A	G	5.230e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
2R	3288046	2R_3288046_SNP [dm3] 2R_7400541_SNP [dm6]	C	T	5.233e^-4	1	UPSTREAM CG11112 INTRON Eaf
3L	1010482	3L_1010482_SNP [dm3] 3L_1010482_SNP [dm6]	T	C	5.264e^-4	1	INTRON trio
3R	15100036	3R_15100036_SNP [dm3] 3R_19274314_SNP [dm6]	T	C	5.276e^-4	1	INTERGENIC
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	5.276e^-4	1	INTERGENIC
3L	13927092	3L_13927092_SNP [dm3] 3L_13933992_SNP [dm6]	G	T	5.280e^-4	1	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	3714568	X_3714568_SNP [dm3] X_3820535_SNP [dm6]	A	G	5.280e^-4	1	DOWNSTREAM tRNA:CR32785 INTRON ec
3R	20298262	3R_20298262_SNP [dm3] 3R_24472540_SNP [dm6]	G	C	5.287e^-4	1	INTERGENIC
3R	20004885	3R_20004885_SNP [dm3] 3R_24179163_SNP [dm6]	C	T	5.291e^-4	1	INTRON CG13606
2L	8713316	2L_8713316_SNP [dm3] 2L_8713316_SNP [dm6]	T	C	5.294e^-4	1	SYNONYMOUS_CODING raw
2L	19818724	2L_19818724_SNP [dm3] 2L_19818724_SNP [dm6]	G	T	5.303e^-4	1	INTRON sick
X	12141765	X_12141765_SNP [dm3] X_12247732_SNP [dm6]	G	T	5.314e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	13656637	X_13656637_SNP [dm3] X_13762604_SNP [dm6]	T	G	5.317e^-4	1	UPSTREAM rdgB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10988647	2R_10988647_SNP [dm3] 2R_15101142_SNP [dm6]	C	G	5.318e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	9791388	2R_9791388_SNP [dm3] 2R_13903883_SNP [dm6]	C	T	5.319e^-4	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	5.324e^-4	1	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
3L	19267199	3L_19267199_SNP [dm3] 3L_19274099_SNP [dm6]	A	G	5.336e^-4	1	UTR_3_PRIME CG14085	TF binding site mE1_TFBS_cad
3L	12089537	3L_12089537_SNP [dm3] 3L_12096437_SNP [dm6]	A	G	5.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18116840	3R_18116840_SNP [dm3] 3R_22291118_SNP [dm6]	C	A	5.345e^-4	1	INTRON SKIP
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	5.345e^-4	1	UPSTREAM bbg INTRON bbg
3R	26008966	3R_26008966_SNP [dm3] 3R_30183244_SNP [dm6]	C	T	5.345e^-4	1	DOWNSTREAM CR44262 INTERGENIC
3R	19190882	3R_19190882_SNP [dm3] 3R_23365160_SNP [dm6]	G	A	5.346e^-4	1	INTERGENIC
3R	24085047	3R_24085047_SNP [dm3] 3R_28259325_SNP [dm6]	C	T	5.349e^-4	1	INTERGENIC
3R	21237346	3R_21237346_SNP [dm3] 3R_25411624_SNP [dm6]	C	T	5.350e^-4	1	INTRON Fur1
2L	12353527	2L_12353527_SNP [dm3] 2L_12353527_SNP [dm6]	G	A	5.351e^-4	1	INTRON bru-2
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	5.358e^-4	1	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19463999	X_19463999_SNP [dm3] X_19569966_SNP [dm6]	T	C	5.363e^-4	1	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
X	16843732	X_16843732_SNP [dm3] X_16949699_SNP [dm6]	G	A	5.370e^-4	1	INTRON RhoGAP15B
3L	17966051	3L_17966051_SNP [dm3] 3L_17972951_SNP [dm6]	C	T	5.379e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17966155	3L_17966155_SNP [dm3] 3L_17973055_SNP [dm6]	T	A	5.379e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17968708	3L_17968708_SNP [dm3] 3L_17975608_SNP [dm6]	G	A	5.379e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19974237	3R_19974237_SNP [dm3] 3R_24148515_SNP [dm6]	C	T	5.379e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2L	2841693	2L_2841693_SNP [dm3] 2L_2841693_SNP [dm6]	A	T	5.394e^-4	1	DOWNSTREAM CG18558 INTRON CG2975
2L	3128751	2L_3128751_SNP [dm3] 2L_3128751_SNP [dm6]	C	A	5.395e^-4	1	UTR_5_PRIME CG15403 INTRON toc
3L	11307891	3L_11307891_SNP [dm3] 3L_11314791_SNP [dm6]	T	C	5.395e^-4	1	UPSTREAM CR44361 INTERGENIC
2R	16951755	2R_16951755_SNP [dm3] 2R_21064250_SNP [dm6]	A	C	5.410e^-4	1	NON_SYNONYMOUS_CODING Cht12
2L	13917896	2L_13917896_SNP [dm3] 2L_13917896_SNP [dm6]	T	C	5.411e^-4	1	INTRON Ance-3
3R	15168758	3R_15168758_SNP [dm3] 3R_19343036_SNP [dm6]	G	A	5.418e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	18130710	2L_18130710_SNP [dm3] 2L_18130710_SNP [dm6]	A	G	5.436e^-4	1	UTR_3_PRIME kel DOWNSTREAM CG5758
2R	8922240	2R_8922240_SNP [dm3] 2R_13034735_SNP [dm6]	A	G	5.444e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7547381	3L_7547381_SNP [dm3] 3L_7554281_SNP [dm6]	G	T	5.446e^-4	1	INTERGENIC
2R	15914407	2R_15914407_SNP [dm3] 2R_20026902_SNP [dm6]	T	C	5.468e^-4	1	INTERGENIC
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	5.476e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19230159	3R_19230159_SNP [dm3] 3R_23404437_SNP [dm6]	T	C	5.478e^-4	1	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
3L	7858681	3L_7858681_SNP [dm3] 3L_7865581_SNP [dm6]	T	C	5.478e^-4	1	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3R	26369921	3R_26369921_SNP [dm3] 3R_30544199_SNP [dm6]	T	C	5.484e^-4	1	INTRON tmod
2L	6309130	2L_6309130_SNP [dm3] 2L_6309130_SNP [dm6]	G	A	5.485e^-4	1	SYNONYMOUS_CODING CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15895623	2R_15895623_SNP [dm3] 2R_20008118_SNP [dm6]	C	A	5.505e^-4	1	DOWNSTREAM CR44628 INTERGENIC
2R	15895632	2R_15895632_SNP [dm3] 2R_20008127_SNP [dm6]	T	G	5.505e^-4	1	DOWNSTREAM CR44628 INTERGENIC
3R	12689075	3R_12689075_SNP [dm3] 3R_16863353_SNP [dm6]	A	G	5.509e^-4	1	INTRON iab-8
3R	19974330	3R_19974330_SNP [dm3] 3R_24148608_SNP [dm6]	G	A	5.514e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	5.515e^-4	1	INTRON CG34114
3L	11801073	3L_11801073_SNP [dm3] 3L_11807973_SNP [dm6]	T	C	5.515e^-4	1	SYNONYMOUS_CODING CG42255
3R	26009168	3R_26009168_SNP [dm3] 3R_30183446_SNP [dm6]	T	C	5.517e^-4	1	DOWNSTREAM CR44262 INTERGENIC
3R	25131722	3R_25131722_INS [dm3] 3R_29306000_INS [dm6]	GT	CCCA	5.520e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	1796516	3L_1796516_SNP [dm3] 3L_1796516_SNP [dm6]	C	T	5.530e^-4	1	SYNONYMOUS_CODING Cdc37 UPSTREAM CG12020	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	2846513	2L_2846513_SNP [dm3] 2L_2846513_SNP [dm6]	A	T	5.533e^-4	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3L	19262817	3L_19262817_INS [dm3] 3L_19269717_INS [dm6]	A	ATGGTTTA	5.542e^-4	1	UPSTREAM CG9629 DOWNSTREAM CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	18213404	3L_18213404_SNP [dm3] 3L_18220304_SNP [dm6]	T	C	5.543e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	14495609	3L_14495609_SNP [dm3] 3L_14502509_SNP [dm6]	A	T	5.545e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2R	15256886	2R_15256886_SNP [dm3] 2R_19369381_SNP [dm6]	C	T	5.550e^-4	1	INTRON CG9416
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	5.551e^-4	1	SPLICE_SITE_REGION tow INTRON tow
2L	19233416	2L_19233416_INS [dm3] 2L_19233416_INS [dm6]	A	AAATAAAGTGC...	5.555e^-4	1	INTERGENIC
3R	10237611	3R_10237611_SNP [dm3] 3R_14411889_SNP [dm6]	T	G	5.555e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3406512	3L_3406512_SNP [dm3] 3L_3406512_SNP [dm6]	T	C	5.570e^-4	1	INTRON sty
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	5.591e^-4	1	INTRON CG2082
2R	18677727	2R_18677727_SNP [dm3] 2R_22790222_SNP [dm6]	A	G	5.592e^-4	1	INTRON CG42260
X	4839904	X_4839904_INS [dm3] X_4945871_INS [dm6]	T	TTTTT	5.592e^-4	1	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	1587278	3R_1587278_SNP [dm3] 3R_5761556_SNP [dm6]	G	C	5.595e^-4	1	INTRON CG2082
2R	13016785	2R_13016785_SNP [dm3] 2R_17129280_SNP [dm6]	C	T	5.598e^-4	1	SYNONYMOUS_CODING Cda9
3R	18055179	3R_18055179_SNP [dm3] 3R_22229457_SNP [dm6]	T	C	5.610e^-4	1	INTRON SKIP
2L	13140384	2L_13140384_SNP [dm3] 2L_13140384_SNP [dm6]	T	C	5.610e^-4	1	INTERGENIC	transposable element FlyBase
3L	10274238	3L_10274238_SNP [dm3] 3L_10281138_SNP [dm6]	G	A	5.615e^-4	1	INTERGENIC
3R	4527664	3R_4527664_SNP [dm3] 3R_8701942_SNP [dm6]	A	T	5.624e^-4	1	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
3L	15625857	3L_15625857_SNP [dm3] 3L_15632757_SNP [dm6]	G	T	5.639e^-4	1	UTR_5_PRIME comm3 UPSTREAM comm3 INTRON comm3
3L	1181299	3L_1181299_SNP [dm3] 3L_1181299_SNP [dm6]	A	T	5.644e^-4	1	INTERGENIC
3L	12092452	3L_12092452_SNP [dm3] 3L_12099352_SNP [dm6]	A	G	5.647e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	5.651e^-4	1	INTERGENIC
3L	16330018	3L_16330018_SNP [dm3] 3L_16336918_SNP [dm6]	G	A	5.652e^-4	1	INTERGENIC
2L	8658306	2L_8658306_SNP [dm3] 2L_8658306_SNP [dm6]	A	G	5.654e^-4	1	INTRON Sema-1a
3R	26005472	3R_26005472_SNP [dm3] 3R_30179750_SNP [dm6]	C	T	5.659e^-4	1	SPLICE_SITE_REGION CG15530 UTR_3_PRIME CG15530 UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	5.672e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
X	17956116	X_17956116_SNP [dm3] X_18062083_SNP [dm6]	T	G	5.673e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3L	19258372	3L_19258372_SNP [dm3] 3L_19265272_SNP [dm6]	G	T	5.683e^-4	1	NON_SYNONYMOUS_CODING CG9666 UTR_3_PRIME CG42374 UPSTREAM CG45081	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4456955	2L_4456955_SNP [dm3] 2L_4456955_SNP [dm6]	G	A	5.686e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	5.705e^-4	1	INTRON trol
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	5.718e^-4	1	INTRON fas
3R	6463383	3R_6463383_SNP [dm3] 3R_10637661_SNP [dm6]	A	G	5.721e^-4	1	INTRON hth
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	5.723e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	13154339	2L_13154339_SNP [dm3] 2L_13154339_SNP [dm6]	A	C	5.725e^-4	1	INTERGENIC
3R	17684813	3R_17684813_SNP [dm3] 3R_21859091_SNP [dm6]	C	T	5.726e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26008027	3R_26008027_SNP [dm3] 3R_30182305_SNP [dm6]	C	T	5.730e^-4	1	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3634285	2L_3634285_SNP [dm3] 2L_3634285_SNP [dm6]	C	T	5.740e^-4	1	SYNONYMOUS_CODING for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
X	17956031	X_17956031_SNP [dm3] X_18061998_SNP [dm6]	A	G	5.748e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	5.754e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18136954	2L_18136954_SNP [dm3] 2L_18136954_SNP [dm6]	A	T	5.755e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	12792165	X_12792165_SNP [dm3] X_12898132_SNP [dm6]	C	A	5.755e^-4	1	SYNONYMOUS_CODING CG32650 UPSTREAM Pde9 DOWNSTREAM CG32649	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	5.760e^-4	1	INTERGENIC
2L	10586732	2L_10586732_SNP [dm3] 2L_10586732_SNP [dm6]	G	A	5.762e^-4	1	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16618880	2R_16618880_SNP [dm3] 2R_20731375_SNP [dm6]	G	T	5.762e^-4	1	UPSTREAM CG13442 INTRON dpr
3L	4307328	3L_4307328_SNP [dm3] 3L_4307328_SNP [dm6]	A	T	5.767e^-4	1	INTRON dyl
3L	1817499	3L_1817499_SNP [dm3] 3L_1817499_SNP [dm6]	T	A	5.767e^-4	1	INTRON GV1
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	5.768e^-4	1	INTERGENIC
2L	12112948	2L_12112948_SNP [dm3] 2L_12112948_SNP [dm6]	C	T	5.775e^-4	1	DOWNSTREAM Phae2 INTERGENIC
X	15264031	X_15264031_SNP [dm3] X_15369998_SNP [dm6]	T	G	5.775e^-4	1	INTRON acj6
2L	7767774	2L_7767774_SNP [dm3] 2L_7767774_SNP [dm6]	C	T	5.777e^-4	1	INTRON CG7191
3L	9684851	3L_9684851_SNP [dm3] 3L_9691751_SNP [dm6]	G	C	5.793e^-4	1	INTRON CG6767	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	15743376	X_15743376_SNP [dm3] X_15849343_SNP [dm6]	G	C	5.809e^-4	1	UPSTREAM sun DOWNSTREAM UBL3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	5.809e^-4	1	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
2L	7197281	2L_7197281_SNP [dm3] 2L_7197281_SNP [dm6]	A	G	5.811e^-4	1	INTRON CG4502
3L	7946019	3L_7946019_SNP [dm3] 3L_7952919_SNP [dm6]	G	T	5.829e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	5.830e^-4	1	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	5.830e^-4	1	INTRON CG9747
3R	22530086	3R_22530086_SNP [dm3] 3R_26704364_SNP [dm6]	T	C	5.839e^-4	1	INTRON amon
3R	16034667	3R_16034667_SNP [dm3] 3R_20208945_SNP [dm6]	G	C	5.840e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	5.846e^-4	1	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	4294723	2R_4294723_SNP [dm3] 2R_8407218_SNP [dm6]	C	A	5.847e^-4	1	INTRON CG2121
3R	19235776	3R_19235776_SNP [dm3] 3R_23410054_SNP [dm6]	T	C	5.848e^-4	1	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19235793	3R_19235793_SNP [dm3] 3R_23410071_SNP [dm6]	T	G	5.848e^-4	1	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16366469	2R_16366469_SNP [dm3] 2R_20478964_SNP [dm6]	C	T	5.848e^-4	1	DOWNSTREAM CG12484 INTERGENIC
X	3928807	X_3928807_SNP [dm3] X_4034774_SNP [dm6]	C	A	5.850e^-4	1	INTERGENIC
X	9803259	X_9803259_SNP [dm3] X_9909226_SNP [dm6]	G	T	5.852e^-4	1	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
2L	7492026	2L_7492026_SNP [dm3] 2L_7492026_SNP [dm6]	A	T	5.864e^-4	1	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26181654	3R_26181654_SNP [dm3] 3R_30355932_SNP [dm6]	A	C	5.866e^-4	1	INTRON hdc
2R	3198025	2R_3198025_SNP [dm3] 2R_7310520_SNP [dm6]	A	C	5.872e^-4	1	UPSTREAM CG12164 INTERGENIC
3R	26637659	3R_26637659_SNP [dm3] 3R_30811937_SNP [dm6]	G	C	5.873e^-4	1	INTRON cindr
2R	17720052	2R_17720052_SNP [dm3] 2R_21832547_SNP [dm6]	G	T	5.884e^-4	1	UTR_3_PRIME CG34040
3R	20842907	3R_20842907_SNP [dm3] 3R_25017185_SNP [dm6]	A	G	5.900e^-4	1	SYNONYMOUS_CODING tnc
X	20030299	X_20030299_INS [dm3] X_20136266_INS [dm6]	A	ATCAGCA	5.903e^-4	1		TF binding site mE1_TFBS_chinmo
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	5.916e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19411953	2L_19411953_SNP [dm3] 2L_19411953_SNP [dm6]	A	T	5.923e^-4	1	UPSTREAM Pax INTRON Pax
3L	932904	3L_932904_SNP [dm3] 3L_932904_SNP [dm6]	C	T	5.927e^-4	1	INTRON Glut1
3L	1584899	3L_1584899_SNP [dm3] 3L_1584899_SNP [dm6]	A	C	5.928e^-4	1	INTRON CG13917
3R	9592189	3R_9592189_SNP [dm3] 3R_13766467_SNP [dm6]	T	A	5.929e^-4	1	INTRON CG9312
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	5.934e^-4	1	INTRON CG34362
2R	19388212	2R_19388212_SNP [dm3] 2R_23500689_SNP [dm6]	C	A	5.939e^-4	1	UTR_3_PRIME CG13558	TF binding site mE1_TFBS_HSA
2L	2835873	2L_2835873_INS [dm3] 2L_2835873_INS [dm6]	C	CC	5.947e^-4	1	DOWNSTREAM CG3119 INTRON CG3119
3R	18347069	3R_18347069_SNP [dm3] 3R_22521347_SNP [dm6]	G	A	5.951e^-4	1	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	5.963e^-4	1	INTRON nkd
2R	8759074	2R_8759074_SNP [dm3] 2R_12871569_SNP [dm6]	A	G	5.963e^-4	1	UTR_3_PRIME bic DOWNSTREAM bic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	22735748	3R_22735748_SNP [dm3] 3R_26910026_SNP [dm6]	T	G	5.966e^-4	1	SYNONYMOUS_CODING T48 DOWNSTREAM Ets97D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7012350	2L_7012350_SNP [dm3] 2L_7012350_SNP [dm6]	C	T	5.971e^-4	1	SYNONYMOUS_CODING CG43321
3R	17755641	3R_17755641_SNP [dm3] 3R_21929919_SNP [dm6]	T	A	5.980e^-4	1	INTERGENIC
2L	18126031	2L_18126031_SNP [dm3] 2L_18126031_SNP [dm6]	A	C	5.981e^-4	1	UPSTREAM CG31785 INTRON CG5758
X	13181547	X_13181547_SNP [dm3] X_13287514_SNP [dm6]	C	G	5.994e^-4	1	UTR_3_PRIME CG15743 UPSTREAM CG15744	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	9032598	2R_9032598_SNP [dm3] 2R_13145093_SNP [dm6]	T	C	6.002e^-4	1	UTR_3_PRIME Ack-like INTRON Ack-like
3L	14331642	3L_14331642_INS [dm3] 3L_14338542_INS [dm6]	C	CGCACAGCC	6.011e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16919627	2R_16919627_SNP [dm3] 2R_21032122_SNP [dm6]	T	A	6.041e^-4	1	INTERGENIC
2L	14009807	2L_14009807_SNP [dm3] 2L_14009807_SNP [dm6]	T	A	6.045e^-4	1	DOWNSTREAM CG42692 & 1 other INTERGENIC
2L	3297088	2L_3297088_SNP [dm3] 2L_3297088_SNP [dm6]	G	A	6.046e^-4	1	SYNONYMOUS_CODING CG9663
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	6.048e^-4	1	INTERGENIC
X	9414903	X_9414903_SNP [dm3] X_9520870_SNP [dm6]	A	T	6.049e^-4	1	INTRON CG32700
X	13982137	X_13982137_SNP [dm3] X_14088104_SNP [dm6]	T	G	6.052e^-4	1	INTERGENIC
3R	16890396	3R_16890396_SNP [dm3] 3R_21064674_SNP [dm6]	A	G	6.055e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	20692028	3L_20692028_SNP [dm3] 3L_20698928_SNP [dm6]	A	T	6.057e^-4	1	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	18421548	2L_18421548_SNP [dm3] 2L_18421548_SNP [dm6]	T	G	6.057e^-4	1	INTERGENIC
3R	18162612	3R_18162612_SNP [dm3] 3R_22336890_SNP [dm6]	C	A	6.061e^-4	1	DOWNSTREAM CG5388 INTRON CG5388
2R	12090661	2R_12090661_SNP [dm3] 2R_16203156_SNP [dm6]	T	C	6.071e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	10034115	3R_10034115_SNP [dm3] 3R_14208393_SNP [dm6]	C	T	6.079e^-4	1	INTRON Dop1R1
3R	20273584	3R_20273584_SNP [dm3] 3R_24447862_SNP [dm6]	G	C	6.088e^-4	1	INTRON nAChRalpha1
2L	19398886	2L_19398886_SNP [dm3] 2L_19398886_SNP [dm6]	C	T	6.093e^-4	1	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26005348	3R_26005348_SNP [dm3] 3R_30179626_SNP [dm6]	A	T	6.096e^-4	1	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	22105747	3R_22105747_SNP [dm3] 3R_26280025_SNP [dm6]	C	T	6.099e^-4	1	INTERGENIC
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	6.104e^-4	1	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	17786082	2R_17786082_SNP [dm3] 2R_21898577_SNP [dm6]	G	A	6.106e^-4	1	INTRON Fili
X	13981922	X_13981922_SNP [dm3] X_14087889_SNP [dm6]	G	C	6.106e^-4	1	INTERGENIC
3L	1792790	3L_1792790_SNP [dm3] 3L_1792790_SNP [dm6]	G	A	6.118e^-4	1	NON_SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14907961	2R_14907961_SNP [dm3] 2R_19020456_SNP [dm6]	T	A	6.123e^-4	1	INTERGENIC
2L	7399133	2L_7399133_SNP [dm3] 2L_7399133_SNP [dm6]	T	A	6.132e^-4	1	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	6.137e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16920485	2R_16920485_SNP [dm3] 2R_21032980_SNP [dm6]	C	T	6.138e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.258e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.08993
In_3R_Mo	0.04345

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	8.7768	0.0124

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1630 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	1.364e^-6	1	INTRON fas
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	3.138e^-6	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	4.061e^-6	1	INTRON FMRFaR
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	6.087e^-6	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	6.633e^-6	1	DOWNSTREAM CR44629 & 1 other INTERGENIC
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	7.904e^-6	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	7.959e^-6	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	8.853e^-6	1	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	9.936e^-6	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	1.024e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	1.043e^-5	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	1.196e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	1.351e^-5	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	1.410e^-5	1	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.419e^-5	1	INTRON CG7120
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	1.428e^-5	1	INTRON Spn31A
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	1.439e^-5	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	1.542e^-5	1	INTERGENIC
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	1.613e^-5	1	INTRON bbg
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	1.753e^-5	1	INTERGENIC
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	1.783e^-5	1	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.796e^-5	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.796e^-5	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	2.058e^-5	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	2.459e^-5	1	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	2.541e^-5	1	INTRON HDAC4
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	2.582e^-5	1	UPSTREAM CG33225 INTERGENIC
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	2.719e^-5	1	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	2.846e^-5	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	2.889e^-5	1	UPSTREAM CG15865 INTRON r
3L	18353698	3L_18353698_SNP [dm3] 3L_18360598_SNP [dm6]	G	C	2.943e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	2.979e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	3.055e^-5	1	INTRON FMRFaR
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	3.237e^-5	1	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	3.241e^-5	1	INTRON CG7120
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	3.244e^-5	1	INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	3.251e^-5	1	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	3.258e^-5	1	INTRON nkd
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	3.284e^-5	1	INTERGENIC
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	3.295e^-5	1	INTRON Ten-a
3L	3007694	3L_3007694_SNP [dm3] 3L_3007694_SNP [dm6]	T	A	3.345e^-5	1	INTRON FMRFaR
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	3.437e^-5	1	INTRON CG5888
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	3.451e^-5	1	INTRON nAChRalpha6
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	3.466e^-5	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	3.490e^-5	1	INTRON hdc
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	3.494e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	3.511e^-5	1	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	11527001	X_11527001_SNP [dm3] X_11632968_SNP [dm6]	C	A	3.594e^-5	1	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	3.699e^-5	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	21903648	2L_21903648_SNP [dm3] 2L_21903648_SNP [dm6]	A	C	3.951e^-5	1	NON_SYNONYMOUS_CODING CG1421
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	3.989e^-5	1	SYNONYMOUS_CODING S-Lap2
3R	27231677	3R_27231677_SNP [dm3] 3R_31405955_SNP [dm6]	A	G	4.008e^-5	1	SPLICE_SITE_REGION Gprk2 UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	18844566	3L_18844566_SNP [dm3] 3L_18851466_SNP [dm6]	C	T	4.034e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	4.206e^-5	1	UPSTREAM para INTERGENIC
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	4.275e^-5	1	INTERGENIC
3L	7655307	3L_7655307_SNP [dm3] 3L_7662207_SNP [dm6]	C	T	4.331e^-5	1	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_sens
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	4.359e^-5	1	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
3L	12354566	3L_12354566_SNP [dm3] 3L_12361466_SNP [dm6]	A	G	4.395e^-5	1	INTERGENIC
3L	10471210	3L_10471210_SNP [dm3] 3L_10478110_SNP [dm6]	G	C	4.464e^-5	1	INTERGENIC
3L	3007740	3L_3007740_INS [dm3] 3L_3007740_INS [dm6]	T	TAAAAAAATATGTTTTT...	4.486e^-5	1	INTRON FMRFaR
2R	20094722	2R_20094722_SNP [dm3] 2R_24207199_SNP [dm6]	A	T	4.537e^-5	1	UPSTREAM CG11406 INTRON CG11406
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	4.539e^-5	1	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	4.629e^-5	1	INTRON FMRFaR
X	16559459	X_16559459_SNP [dm3] X_16665426_SNP [dm6]	G	A	4.705e^-5	1	UPSTREAM CG15865 INTRON r
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	4.864e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
X	16559450	X_16559450_SNP [dm3] X_16665417_SNP [dm6]	T	C	4.905e^-5	1	UPSTREAM CG15865 INTRON r
3L	8396430	3L_8396430_SNP [dm3] 3L_8403330_SNP [dm6]	C	T	4.981e^-5	1	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	5.071e^-5	1	INTRON Spn31A
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	5.228e^-5	1	INTERGENIC
3L	5691071	3L_5691071_SNP [dm3] 3L_5697971_SNP [dm6]	T	C	5.341e^-5	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13040774	3L_13040774_SNP [dm3] 3L_13047674_SNP [dm6]	T	C	5.354e^-5	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	5.382e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	5.382e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3L	3007752	3L_3007752_SNP [dm3] 3L_3007752_SNP [dm6]	G	C	5.640e^-5	1	INTRON FMRFaR
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	5.647e^-5	1	INTRON twin
2L	13732369	2L_13732369_SNP [dm3] 2L_13732369_SNP [dm6]	T	G	5.745e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	5.797e^-5	1	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	5.953e^-5	1	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
X	16559445	X_16559445_SNP [dm3] X_16665412_SNP [dm6]	A	T	6.030e^-5	1	UPSTREAM CG15865 INTRON r
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	6.100e^-5	1	UTR_3_PRIME CG42741 INTRON twi
3L	3007737	3L_3007737_SNP [dm3] 3L_3007737_SNP [dm6]	C	T	6.119e^-5	1	INTRON FMRFaR
X	16559414	X_16559414_SNP [dm3] X_16665381_SNP [dm6]	C	T	6.129e^-5	1	UPSTREAM CG15865 INTRON r
3L	11567729	3L_11567729_SNP [dm3] 3L_11574629_SNP [dm6]	G	A	6.146e^-5	1	UTR_5_PRIME CG33490 DOWNSTREAM CG33489
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	6.207e^-5	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	6.313e^-5	1	UPSTREAM para INTERGENIC
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	6.397e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	6.460e^-5	1	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	6.503e^-5	1	INTRON CG32206
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	6.544e^-5	1	INTERGENIC
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	6.545e^-5	1	INTRON rgn
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	6.590e^-5	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
3R	27209881	3R_27209881_SNP [dm3] 3R_31384159_SNP [dm6]	C	T	6.598e^-5	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	6.605e^-5	1	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	6.657e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	6.668e^-5	1	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	6.686e^-5	1	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	6.716e^-5	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	4643969	2L_4643969_SNP [dm3] 2L_4643969_SNP [dm6]	A	T	6.743e^-5	1	NON_SYNONYMOUS_CODING CG15635
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	6.789e^-5	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	6.800e^-5	1	INTERGENIC
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	6.896e^-5	1	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	6.910e^-5	1	INTRON lilli
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	6.992e^-5	1	INTRON trol
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	7.118e^-5	1	INTRON fas
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	7.139e^-5	1	INTERGENIC
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	7.158e^-5	1	INTRON lilli	TF binding site mE1_TFBS_Trl
X	12156780	X_12156780_SNP [dm3] X_12262747_SNP [dm6]	C	T	7.279e^-5	1	INTRON Ten-a
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	7.299e^-5	1	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	11927865	3L_11927865_SNP [dm3] 3L_11934765_SNP [dm6]	C	T	7.388e^-5	1	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	3008347	3L_3008347_SNP [dm3] 3L_3008347_SNP [dm6]	C	G	7.405e^-5	1	INTRON FMRFaR
X	16559447	X_16559447_SNP [dm3] X_16665414_SNP [dm6]	G	C	7.516e^-5	1	UPSTREAM CG15865 INTRON r
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	7.584e^-5	1	UPSTREAM jp INTRON jp
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	7.694e^-5	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	7.734e^-5	1	INTRON trol
2L	3854056	2L_3854056_SNP [dm3] 2L_3854056_SNP [dm6]	G	A	7.752e^-5	1	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11927827	3L_11927827_SNP [dm3] 3L_11934727_SNP [dm6]	C	T	7.803e^-5	1	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	13274788	2L_13274788_SNP [dm3] 2L_13274788_SNP [dm6]	C	T	7.920e^-5	1	SYNONYMOUS_CODING CG44085 INTRON CG44085
3L	11759557	3L_11759557_INS [dm3] 3L_11766457_INS [dm6]	C	CAGGGAC	7.955e^-5	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	21845174	3R_21845174_DEL [dm3] 3R_26019452_DEL [dm6]	GACTTAATGTA...	T	8.231e^-5	1	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	8.259e^-5	1	UPSTREAM para INTERGENIC
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	8.316e^-5	1	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11759438	3L_11759438_SNP [dm3] 3L_11766338_SNP [dm6]	T	G	8.440e^-5	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	11759447	3L_11759447_SNP [dm3] 3L_11766347_SNP [dm6]	A	T	8.440e^-5	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	3029583	3L_3029583_SNP [dm3] 3L_3029583_SNP [dm6]	C	G	8.517e^-5	1	INTERGENIC
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	8.577e^-5	1	INTRON dnt	TF binding site mE1_TFBS_cad
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	8.671e^-5	1	UPSTREAM para INTERGENIC
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	8.856e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	8.944e^-5	1	DOWNSTREAM Bace INTRON Dh31
2L	10004348	2L_10004348_SNP [dm3] 2L_10004348_SNP [dm6]	G	A	8.976e^-5	1	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	9.032e^-5	1	INTRON rgn
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	9.215e^-5	1	INTRON fas
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	9.222e^-5	1	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	9.287e^-5	1	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14046639	3R_14046639_SNP [dm3] 3R_18220917_SNP [dm6]	G	T	9.290e^-5	1	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	23255363	3L_23255363_SNP [dm3] 3L_23262263_SNP [dm6]	T	A	9.320e^-5	1	INTRON nAChRalpha4
X	2815585	X_2815585_SNP [dm3] X_2921552_SNP [dm6]	G	A	9.358e^-5	1	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
X	14260644	X_14260644_DEL [dm3] X_14366611_DEL [dm6]	CTGAGTTTT	C	9.383e^-5	1	INTRON dpr8
X	16559458	X_16559458_SNP [dm3] X_16665425_SNP [dm6]	C	A	9.446e^-5	1	UPSTREAM CG15865 INTRON r
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	9.474e^-5	1	UPSTREAM CG1722 INTRON CG32521
3R	6986476	3R_6986476_SNP [dm3] 3R_11160754_SNP [dm6]	A	T	9.550e^-5	1	UPSTREAM CG4757 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18976864	2R_18976864_SNP [dm3] 2R_23089341_SNP [dm6]	T	C	9.762e^-5	1	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	9.923e^-5	1	INTRON rgn
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	9.961e^-5	1	SYNONYMOUS_CODING CG15210 INTRON sbr
3L	9367233	3L_9367233_INS [dm3] 3L_9374133_INS [dm6]	A	ACTATATA	1.004e^-4	1	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	1.007e^-4	1	INTRON Atf3
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	1.007e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10088520	2L_10088520_SNP [dm3] 2L_10088520_SNP [dm6]	G	A	1.015e^-4	1	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	1.022e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9679873	3L_9679873_SNP [dm3] 3L_9686773_SNP [dm6]	T	A	1.039e^-4	1	DOWNSTREAM CG16719 INTRON CG6767
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	1.052e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	1.054e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	11759566	3L_11759566_INS [dm3] 3L_11766466_INS [dm6]	C	CA	1.061e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2L	6259168	2L_6259168_SNP [dm3] 2L_6259168_SNP [dm6]	T	A	1.068e^-4	1	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16108230	X_16108230_SNP [dm3] X_16214197_SNP [dm6]	T	C	1.071e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	1.072e^-4	1	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.081e^-4	1	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.086e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	1.089e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	1.096e^-4	1	UTR_5_PRIME CG5160
3R	18341500	3R_18341500_SNP [dm3] 3R_22515778_SNP [dm6]	C	A	1.112e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	17339520	3R_17339520_SNP [dm3] 3R_21513798_SNP [dm6]	A	T	1.118e^-4	1	DOWNSTREAM C15 INTERGENIC
2L	18139644	2L_18139644_SNP [dm3] 2L_18139644_SNP [dm6]	G	A	1.127e^-4	1	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
3R	18162612	3R_18162612_SNP [dm3] 3R_22336890_SNP [dm6]	C	A	1.134e^-4	1	DOWNSTREAM CG5388 INTRON CG5388
3L	16337612	3L_16337612_SNP [dm3] 3L_16344512_SNP [dm6]	G	A	1.144e^-4	1	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
2L	3784878	2L_3784878_INS [dm3] 2L_3784878_INS [dm6]	T	TT	1.160e^-4	1	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	1.171e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	1.174e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3L	7891199	3L_7891199_SNP [dm3] 3L_7898099_SNP [dm6]	A	G	1.182e^-4	1	SYNONYMOUS_CODING pbl
3L	18353309	3L_18353309_SNP [dm3] 3L_18360209_SNP [dm6]	T	G	1.199e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	1.208e^-4	1	INTRON Ten-a
X	9954599	X_9954599_SNP [dm3] X_10060566_SNP [dm6]	C	T	1.213e^-4	1	SYNONYMOUS_CODING CG15312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	1.218e^-4	1	INTRON kibra
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	1.235e^-4	1	INTERGENIC
X	16559537	X_16559537_INS [dm3] X_16665504_INS [dm6]	A	AGA	1.241e^-4	1	INTRON r
3L	1586236	3L_1586236_SNP [dm3] 3L_1586236_SNP [dm6]	A	T	1.243e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	23480594	3R_23480594_SNP [dm3] 3R_27654872_SNP [dm6]	T	C	1.243e^-4	1	INTRON tau	TF binding site mE1_TFBS_inv
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	1.253e^-4	1	UPSTREAM para INTERGENIC
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	1.259e^-4	1	INTERGENIC
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	1.263e^-4	1	INTRON dpr3
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	1.275e^-4	1	INTRON CG34377
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	1.277e^-4	1	INTRON CG1461
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	1.283e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	1.286e^-4	1	INTRON blow	TF binding site mE1_TFBS_chinmo
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	1.287e^-4	1	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	1.288e^-4	1	UPSTREAM CG5758 INTERGENIC
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	1.295e^-4	1	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	1.303e^-4	1	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27231355	3R_27231355_SNP [dm3] 3R_31405633_SNP [dm6]	A	C	1.329e^-4	1	UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14103866	2R_14103866_SNP [dm3] 2R_18216361_SNP [dm6]	A	G	1.332e^-4	1	INTERGENIC
2R	4945353	2R_4945353_SNP [dm3] 2R_9057848_SNP [dm6]	G	C	1.336e^-4	1	INTRON CG13743
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	1.344e^-4	1	INTRON CAP
3L	7105140	3L_7105140_INS [dm3] 3L_7112040_INS [dm6]	A	AA	1.347e^-4	1	INTRON form3
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.357e^-4	1	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2831855	3L_2831855_SNP [dm3] 3L_2831855_SNP [dm6]	A	T	1.368e^-4	1	INTRON CG43444
X	12795274	X_12795274_SNP [dm3] X_12901241_SNP [dm6]	C	T	1.383e^-4	1	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	16922093	2R_16922093_SNP [dm3] 2R_21034588_SNP [dm6]	T	C	1.400e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	15043475	3L_15043475_INS [dm3] 3L_15050375_INS [dm6]	A	AG	1.402e^-4	1	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	1.413e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	1.429e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
2L	9871621	2L_9871621_SNP [dm3] 2L_9871621_SNP [dm6]	G	C	1.429e^-4	1	INTRON nAChRalpha6
2L	5556044	2L_5556044_SNP [dm3] 2L_5556044_SNP [dm6]	A	G	1.438e^-4	1	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
3R	20032700	3R_20032700_SNP [dm3] 3R_24206978_SNP [dm6]	T	C	1.471e^-4	1	INTRON twin
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	1.473e^-4	1	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	16559535	X_16559535_SNP [dm3] X_16665502_SNP [dm6]	A	T	1.502e^-4	1	INTRON r
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	1.502e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	1.514e^-4	1	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	1.519e^-4	1	DOWNSTREAM CR44026 INTRON baz
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	1.541e^-4	1	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	16428055	X_16428055_SNP [dm3] X_16534022_SNP [dm6]	C	T	1.541e^-4	1	UPSTREAM para INTERGENIC
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	1.550e^-4	1	DOWNSTREAM CG31785 INTRON CG5758
2R	9270798	2R_9270798_SNP [dm3] 2R_13383293_SNP [dm6]	T	G	1.551e^-4	1	INTERGENIC
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	1.573e^-4	1	INTRON Sh
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	1.574e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	1.580e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	1.584e^-4	1	INTERGENIC
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	1.619e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	1.619e^-4	1	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	1.629e^-4	1	INTRON Dscam2	TF binding site mE1_TFBS_HSA
3R	8455877	3R_8455877_INS [dm3] 3R_12630155_INS [dm6]	T	TA	1.630e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3
X	22041882	X_22041882_SNP [dm3] X_22640046_SNP [dm6]	A	C	1.632e^-4	1	INTERGENIC	transposable element FlyBase
3L	3006780	3L_3006780_SNP [dm3] 3L_3006780_SNP [dm6]	C	T	1.640e^-4	1	INTRON FMRFaR
2L	3883058	2L_3883058_DEL [dm3] 2L_3883058_DEL [dm6]	GAGAAC	A	1.644e^-4	1	INTRON capu	TF binding site mE1_TFBS_HSA
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	1.647e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5690084	3L_5690084_SNP [dm3] 3L_5696984_SNP [dm6]	G	T	1.649e^-4	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	8455862	3R_8455862_SNP [dm3] 3R_12630140_SNP [dm6]	A	G	1.653e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
3R	27209933	3R_27209933_SNP [dm3] 3R_31384211_SNP [dm6]	T	C	1.654e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.658e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	23592526	3L_23592526_SNP [dm3] 3L_23599426_SNP [dm6]	T	C	1.667e^-4	1	INTRON AGO3	transposable element FlyBase
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	1.668e^-4	1	INTRON hdc
3L	15287574	3L_15287574_SNP [dm3] 3L_15294474_SNP [dm6]	G	T	1.673e^-4	1	INTERGENIC
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	1.686e^-4	1	DOWNSTREAM CG5556 INTERGENIC
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	1.686e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	17430384	X_17430384_SNP [dm3] X_17536351_SNP [dm6]	G	A	1.690e^-4	1	INTRON CG43658
3L	12343191	3L_12343191_SNP [dm3] 3L_12350091_SNP [dm6]	G	A	1.693e^-4	1	INTRON CrzR
2L	9831026	2L_9831026_DEL [dm3] 2L_9831026_DEL [dm6]	AA	A	1.694e^-4	1	INTRON nAChRalpha6
3R	22227453	3R_22227453_SNP [dm3] 3R_26401731_SNP [dm6]	A	T	1.697e^-4	1	DOWNSTREAM ppk15 INTERGENIC
3R	21099496	3R_21099496_SNP [dm3] 3R_25273774_SNP [dm6]	A	C	1.712e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	1.712e^-4	1	INTRON CG4998	TF binding site mE1_TFBS_cad
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	1.719e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	1.726e^-4	1	INTRON CG6154
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	1.741e^-4	1	INTRON spir
3R	17339525	3R_17339525_SNP [dm3] 3R_21513803_SNP [dm6]	A	G	1.748e^-4	1	DOWNSTREAM C15 INTERGENIC
3L	18186242	3L_18186242_SNP [dm3] 3L_18193142_SNP [dm6]	T	C	1.751e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13226768	3L_13226768_SNP [dm3] 3L_13233668_SNP [dm6]	C	T	1.775e^-4	1	INTRON caps
3R	8455867	3R_8455867_SNP [dm3] 3R_12630145_SNP [dm6]	T	C	1.778e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
2L	9991545	2L_9991545_SNP [dm3] 2L_9991545_SNP [dm6]	T	A	1.786e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	505733	2L_505733_SNP [dm3] 2L_505733_SNP [dm6]	C	T	1.801e^-4	1	INTRON ush
3L	3008224	3L_3008224_SNP [dm3] 3L_3008224_SNP [dm6]	A	G	1.808e^-4	1	INTRON FMRFaR
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	1.809e^-4	1	INTERGENIC
3R	10230572	3R_10230572_SNP [dm3] 3R_14404850_SNP [dm6]	T	A	1.821e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_inv
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	1.826e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11922899	3L_11922899_SNP [dm3] 3L_11929799_SNP [dm6]	C	T	1.839e^-4	1	INTRON CG44837 & 1 other
3R	11838561	3R_11838561_INS [dm3] 3R_16012839_INS [dm6]	T	TTTGGGT	1.839e^-4	1	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	1.855e^-4	1	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
3R	8455833	3R_8455833_SNP [dm3] 3R_12630111_SNP [dm6]	C	A	1.875e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	1.879e^-4	1	INTRON CG9850
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	1.880e^-4	1	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	3789415	3R_3789415_SNP [dm3] 3R_7963693_SNP [dm6]	A	G	1.882e^-4	1	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	4865181	X_4865181_SNP [dm3] X_4971148_SNP [dm6]	A	T	1.886e^-4	1	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18168858	2L_18168858_SNP [dm3] 2L_18168858_SNP [dm6]	C	G	1.898e^-4	1	INTRON CG42750	TF binding site mE1_TFBS_inv
3R	22227371	3R_22227371_SNP [dm3] 3R_26401649_SNP [dm6]	G	A	1.900e^-4	1	DOWNSTREAM ppk15 INTERGENIC
3L	6463109	3L_6463109_SNP [dm3] 3L_6470009_SNP [dm6]	A	G	1.906e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	1.907e^-4	1	INTRON CG3009
3L	3007817	3L_3007817_SNP [dm3] 3L_3007817_SNP [dm6]	C	T	1.924e^-4	1	INTRON FMRFaR
2L	10374282	2L_10374282_SNP [dm3] 2L_10374282_SNP [dm6]	A	T	1.925e^-4	1	UTR_3_PRIME CG33303 UPSTREAM rho-5	TF binding site mE1_TFBS_cad
2R	16473614	2R_16473614_INS [dm3] 2R_20586109_INS [dm6]	C	AA	1.926e^-4	1	UPSTREAM mir-991 & 1 other DOWNSTREAM Nnf1a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	1.930e^-4	1	INTERGENIC
3L	7485024	3L_7485024_SNP [dm3] 3L_7491924_SNP [dm6]	G	A	1.934e^-4	1	NON_SYNONYMOUS_CODING Cyp316a1
2L	15564138	2L_15564138_SNP [dm3] 2L_15564138_SNP [dm6]	C	A	1.957e^-4	1	INTRON kek3
2L	9991560	2L_9991560_SNP [dm3] 2L_9991560_SNP [dm6]	C	T	1.968e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	1.969e^-4	1	INTRON jigr1
3L	18844597	3L_18844597_SNP [dm3] 3L_18851497_SNP [dm6]	C	T	1.972e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22215088	3R_22215088_SNP [dm3] 3R_26389366_SNP [dm6]	C	T	1.976e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26754871	3R_26754871_SNP [dm3] 3R_30929149_SNP [dm6]	T	C	1.978e^-4	1	SYNONYMOUS_CODING Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2841738	2L_2841738_SNP [dm3] 2L_2841738_SNP [dm6]	T	C	1.981e^-4	1	DOWNSTREAM CG18558 INTRON CG2975
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	1.985e^-4	1	INTRON Pkc53E
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	1.998e^-4	1	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7437094	2L_7437094_SNP [dm3] 2L_7437094_SNP [dm6]	G	A	2.000e^-4	1	UPSTREAM CG5973 INTERGENIC
3L	10234282	3L_10234282_SNP [dm3] 3L_10241182_SNP [dm6]	C	A	2.007e^-4	1	DOWNSTREAM CR45403 INTERGENIC
X	12156782	X_12156782_SNP [dm3] X_12262749_SNP [dm6]	C	T	2.009e^-4	1	INTRON Ten-a
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	2.011e^-4	1	INTRON Wnt6
2L	7398909	2L_7398909_SNP [dm3] 2L_7398909_SNP [dm6]	G	C	2.012e^-4	1	UPSTREAM CR44079 & 1 other INTERGENIC
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	2.016e^-4	1	INTERGENIC
2L	19317934	2L_19317934_SNP [dm3] 2L_19317934_SNP [dm6]	C	A	2.017e^-4	1	INTERGENIC
2L	1792847	2L_1792847_SNP [dm3] 2L_1792847_SNP [dm6]	T	C	2.026e^-4	1	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
X	4484066	X_4484066_INS [dm3] X_4590033_INS [dm6]	A	AAA	2.030e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	16407364	3R_16407364_SNP [dm3] 3R_20581642_SNP [dm6]	A	T	2.037e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2R	17979845	2R_17979845_SNP [dm3] 2R_22092340_SNP [dm6]	A	T	2.038e^-4	1	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17339518	3R_17339518_SNP [dm3] 3R_21513796_SNP [dm6]	T	C	2.039e^-4	1	DOWNSTREAM C15 INTERGENIC
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	2.047e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	14294525	3L_14294525_SNP [dm3] 3L_14301425_SNP [dm6]	G	A	2.073e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
X	19054164	X_19054164_SNP [dm3] X_19160131_SNP [dm6]	C	T	2.075e^-4	1	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10068211	2L_10068211_SNP [dm3] 2L_10068211_SNP [dm6]	A	C	2.076e^-4	1	INTRON CG44153
2R	11333214	2R_11333214_SNP [dm3] 2R_15445709_SNP [dm6]	G	A	2.101e^-4	1	INTRON CG43729
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	2.102e^-4	1	INTRON Hs3st-A
2L	21903844	2L_21903844_SNP [dm3] 2L_21903844_SNP [dm6]	C	T	2.115e^-4	1	DOWNSTREAM CG1421 INTERGENIC
X	11700686	X_11700686_SNP [dm3] X_11806653_SNP [dm6]	T	A	2.116e^-4	1	UPSTREAM Hsc70-3 INTRON Hsc70-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	14262237	X_14262237_SNP [dm3] X_14368204_SNP [dm6]	C	T	2.118e^-4	1	INTRON dpr8
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	2.122e^-4	1	INTRON fz2	TF binding site mE1_TFBS_Trl
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	2.122e^-4	1	INTRON a
3L	5472352	3L_5472352_SNP [dm3] 3L_5479252_SNP [dm6]	G	C	2.129e^-4	1	UPSTREAM CG4835 INTERGENIC
3L	14371933	3L_14371933_SNP [dm3] 3L_14378833_SNP [dm6]	A	G	2.131e^-4	1	INTERGENIC
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	2.136e^-4	1	INTRON CG44153
2L	16129464	2L_16129464_SNP [dm3] 2L_16129464_SNP [dm6]	T	A	2.148e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	5978045	2L_5978045_SNP [dm3] 2L_5978045_SNP [dm6]	T	G	2.152e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9688872	3L_9688872_SNP [dm3] 3L_9695772_SNP [dm6]	C	A	2.171e^-4	1	UPSTREAM CG6767 DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2804614	3L_2804614_SNP [dm3] 3L_2804614_SNP [dm6]	C	T	2.173e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	2.175e^-4	1	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
3R	27209976	3R_27209976_SNP [dm3] 3R_31384254_SNP [dm6]	A	G	2.181e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	2.186e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
X	16757061	X_16757061_SNP [dm3] X_16863028_SNP [dm6]	G	A	2.192e^-4	1	INTRON CG13003
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	2.194e^-4	1	DOWNSTREAM CG8086 & 1 other INTRON CG43057
2L	10126712	2L_10126712_SNP [dm3] 2L_10126712_SNP [dm6]	C	T	2.196e^-4	1	DOWNSTREAM CG34109 INTRON CG44153
X	16710183	X_16710183_SNP [dm3] X_16816150_SNP [dm6]	C	A	2.229e^-4	1	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	2.243e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	16559400	X_16559400_SNP [dm3] X_16665367_SNP [dm6]	A	G	2.245e^-4	1	UPSTREAM CG15865 INTRON r
X	16559402	X_16559402_SNP [dm3] X_16665369_SNP [dm6]	A	T	2.245e^-4	1	UPSTREAM CG15865 INTRON r
3L	17699660	3L_17699660_DEL [dm3] 3L_17706560_DEL [dm6]	CGTC	C	2.258e^-4	1	INTRON Ccn
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	2.260e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4813097	2L_4813097_SNP [dm3] 2L_4813097_SNP [dm6]	C	T	2.270e^-4	1	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	19904740	2R_19904740_SNP [dm3] 2R_24017217_SNP [dm6]	C	A	2.272e^-4	1	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	2.277e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	2.280e^-4	1	INTRON bbg
2L	22098123	2L_22098123_SNP [dm3] 2L_22098123_SNP [dm6]	A	G	2.287e^-4	1	INTERGENIC
2R	7902125	2R_7902125_SNP [dm3] 2R_12014620_SNP [dm6]	G	T	2.298e^-4	1	UPSTREAM CR44306 INTRON otk
2R	9453385	2R_9453385_SNP [dm3] 2R_13565880_SNP [dm6]	A	C	2.300e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	8153986	2R_8153986_SNP [dm3] 2R_12266481_SNP [dm6]	G	T	2.301e^-4	1	INTRON Cam
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	2.307e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6078452	X_6078452_SNP [dm3] X_6184419_SNP [dm6]	G	A	2.309e^-4	1	INTRON Ca-alpha1T
2L	7436184	2L_7436184_SNP [dm3] 2L_7436184_SNP [dm6]	T	A	2.311e^-4	1	INTERGENIC
X	3922668	X_3922668_SNP [dm3] X_4028635_SNP [dm6]	A	C	2.314e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18990663	X_18990663_SNP [dm3] X_19096630_SNP [dm6]	C	T	2.322e^-4	1	INTERGENIC
X	10693164	X_10693164_SNP [dm3] X_10799131_SNP [dm6]	A	G	2.326e^-4	1	INTRON Imp
2L	9831024	2L_9831024_SNP [dm3] 2L_9831024_SNP [dm6]	T	G	2.336e^-4	1	INTRON nAChRalpha6
3R	4991146	3R_4991146_SNP [dm3] 3R_9165424_SNP [dm6]	T	A	2.339e^-4	1	INTRON pum
X	10017488	X_10017488_SNP [dm3] X_10123455_SNP [dm6]	G	A	2.340e^-4	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3R	3783969	3R_3783969_SNP [dm3] 3R_7958247_SNP [dm6]	T	C	2.341e^-4	1	INTRON dsx
3L	14503618	3L_14503618_SNP [dm3] 3L_14510518_SNP [dm6]	C	G	2.341e^-4	1	UPSTREAM bbg INTRON bbg
3L	14503619	3L_14503619_SNP [dm3] 3L_14510519_SNP [dm6]	G	A	2.341e^-4	1	UPSTREAM bbg INTRON bbg
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	2.345e^-4	1	UPSTREAM CG11112 INTRON Eaf
X	16108211	X_16108211_SNP [dm3] X_16214178_SNP [dm6]	C	A	2.348e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15029918	2R_15029918_SNP [dm3] 2R_19142413_SNP [dm6]	T	A	2.351e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	2.368e^-4	1	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19413659	2R_19413659_SNP [dm3] 2R_23526136_SNP [dm6]	C	T	2.371e^-4	1	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	2.373e^-4	1	INTRON CR44833 & 1 other
2R	14620466	2R_14620466_SNP [dm3] 2R_18732961_SNP [dm6]	C	T	2.389e^-4	1	INTRON Hs3st-A
2L	4647890	2L_4647890_SNP [dm3] 2L_4647890_SNP [dm6]	A	G	2.390e^-4	1	UTR_3_PRIME CG43798
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	2.408e^-4	1	INTRON Tgi
3R	25087659	3R_25087659_SNP [dm3] 3R_29261937_SNP [dm6]	T	G	2.421e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17755607	3R_17755607_SNP [dm3] 3R_21929885_SNP [dm6]	A	G	2.447e^-4	1	INTERGENIC
X	12069886	X_12069886_SNP [dm3] X_12175853_SNP [dm6]	G	A	2.451e^-4	1	DOWNSTREAM CG1924 INTRON Ten-a
2R	18967600	2R_18967600_SNP [dm3] 2R_23080077_SNP [dm6]	T	A	2.460e^-4	1	UPSTREAM Gr59a & 1 other INTERGENIC
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	2.465e^-4	1	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	2.467e^-4	1	INTRON CG30463
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	2.469e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1794081	2L_1794081_SNP [dm3] 2L_1794081_SNP [dm6]	A	G	2.473e^-4	1	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
3L	2804644	3L_2804644_SNP [dm3] 3L_2804644_SNP [dm6]	T	C	2.476e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	2.497e^-4	1	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	4891727	2L_4891727_SNP [dm3] 2L_4891727_SNP [dm6]	G	A	2.511e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	2.516e^-4	1	DOWNSTREAM CG14089 INTRON CG14086
2R	16301581	2R_16301581_SNP [dm3] 2R_20414076_SNP [dm6]	G	T	2.520e^-4	1	INTERGENIC
3L	1589050	3L_1589050_SNP [dm3] 3L_1589050_SNP [dm6]	C	A	2.524e^-4	1	INTRON CG13917
X	12146582	X_12146582_SNP [dm3] X_12252549_SNP [dm6]	G	A	2.526e^-4	1	INTRON Ten-a
3L	3006414	3L_3006414_SNP [dm3] 3L_3006414_SNP [dm6]	A	G	2.532e^-4	1	INTRON FMRFaR
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	2.547e^-4	1	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3L	7891310	3L_7891310_SNP [dm3] 3L_7898210_SNP [dm6]	A	G	2.551e^-4	1	SYNONYMOUS_CODING pbl
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	2.552e^-4	1	UTR_3_PRIME CG17839
3L	3006448	3L_3006448_SNP [dm3] 3L_3006448_SNP [dm6]	C	A	2.552e^-4	1	INTRON FMRFaR
2L	3855038	2L_3855038_SNP [dm3] 2L_3855038_SNP [dm6]	A	C	2.554e^-4	1	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	2.554e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6078371	X_6078371_DEL [dm3] X_6184338_DEL [dm6]	AA	A	2.575e^-4	1	INTRON Ca-alpha1T
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	2.581e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	2.581e^-4	1	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	2.582e^-4	1	INTRON kirre
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	2.582e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13187247	3L_13187247_SNP [dm3] 3L_13194147_SNP [dm6]	T	A	2.597e^-4	1	INTERGENIC
X	16559391	X_16559391_SNP [dm3] X_16665358_SNP [dm6]	A	T	2.598e^-4	1	UPSTREAM CG15865 INTRON r
3R	22231164	3R_22231164_INS [dm3] 3R_26405442_INS [dm6]	A	ATT	2.598e^-4	1	INTERGENIC
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	2.603e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	6790363	X_6790363_SNP [dm3] X_6896330_SNP [dm6]	C	T	2.604e^-4	1	INTERGENIC
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	2.608e^-4	1	UPSTREAM bbg INTRON bbg
X	16428005	X_16428005_SNP [dm3] X_16533972_SNP [dm6]	C	T	2.610e^-4	1	UPSTREAM para INTERGENIC
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	2.619e^-4	1	INTERGENIC
2R	2410132	2R_2410132_SNP [dm3] 2R_6522627_SNP [dm6]	C	T	2.620e^-4	1	INTRON jing
2L	12088992	2L_12088992_SNP [dm3] 2L_12088992_SNP [dm6]	G	T	2.627e^-4	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	2.631e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11523674	3L_11523674_SNP [dm3] 3L_11530574_SNP [dm6]	G	A	2.635e^-4	1	INTRON Mob2
2L	2689270	2L_2689270_SNP [dm3] 2L_2689270_SNP [dm6]	A	G	2.648e^-4	1	INTRON CG31690
X	6078339	X_6078339_SNP [dm3] X_6184306_SNP [dm6]	C	T	2.652e^-4	1	INTRON Ca-alpha1T
X	5221846	X_5221846_SNP [dm3] X_5327813_SNP [dm6]	A	G	2.652e^-4	1	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
3L	9676307	3L_9676307_SNP [dm3] 3L_9683207_SNP [dm6]	C	T	2.655e^-4	1	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16756831	X_16756831_SNP [dm3] X_16862798_SNP [dm6]	T	C	2.660e^-4	1	INTRON CG13003
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	2.665e^-4	1	INTRON stan
3R	17755608	3R_17755608_SNP [dm3] 3R_21929886_SNP [dm6]	A	C	2.669e^-4	1	INTERGENIC
3L	750457	3L_750457_SNP [dm3] 3L_750457_SNP [dm6]	C	A	2.669e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	2.671e^-4	1	INTRON Hnf4 & 1 other
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	2.674e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16761852	X_16761852_SNP [dm3] X_16867819_SNP [dm6]	A	C	2.677e^-4	1	INTRON CG13003
3R	16407390	3R_16407390_SNP [dm3] 3R_20581668_SNP [dm6]	C	T	2.681e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	2.693e^-4	1	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	2.705e^-4	1	INTRON kel
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	2.706e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	16330018	3L_16330018_SNP [dm3] 3L_16336918_SNP [dm6]	G	A	2.711e^-4	1	INTERGENIC
X	20867430	X_20867430_SNP [dm3] X_20996403_SNP [dm6]	C	T	2.714e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6827467	2L_6827467_SNP [dm3] 2L_6827467_SNP [dm6]	C	A	2.718e^-4	1	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	18121470	2L_18121470_SNP [dm3] 2L_18121470_SNP [dm6]	C	T	2.721e^-4	1	INTRON CG5758
X	11700655	X_11700655_DEL [dm3] X_11806622_DEL [dm6]	TGTTGCCTCAAT...	T	2.739e^-4	1	UPSTREAM Hsc70-3 INTRON Hsc70-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	8455908	3R_8455908_SNP [dm3] 3R_12630186_SNP [dm6]	T	G	2.746e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	2.751e^-4	1	INTRON bbg
3L	3008225	3L_3008225_SNP [dm3] 3L_3008225_SNP [dm6]	G	A	2.751e^-4	1	INTRON FMRFaR
2L	12556090	2L_12556090_SNP [dm3] 2L_12556090_SNP [dm6]	T	C	2.763e^-4	1	INTERGENIC
3L	10810658	3L_10810658_SNP [dm3] 3L_10817558_SNP [dm6]	G	A	2.767e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3R	6946669	3R_6946669_SNP [dm3] 3R_11120947_SNP [dm6]	T	A	2.770e^-4	1	INTERGENIC
3R	10304470	3R_10304470_SNP [dm3] 3R_14478748_SNP [dm6]	G	T	2.779e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	8151515	3R_8151515_SNP [dm3] 3R_12325793_SNP [dm6]	T	C	2.784e^-4	1	DOWNSTREAM CG10013 INTERGENIC	TF binding site BDTNP1_TFBS_da
X	10399301	X_10399301_INS [dm3] X_10505268_INS [dm6]	T	TAGATTTCAAATCAGT...	2.788e^-4	1	INTRON spri
3L	13226762	3L_13226762_SNP [dm3] 3L_13233662_SNP [dm6]	C	T	2.789e^-4	1	INTRON caps
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	2.794e^-4	1	INTRON Ten-a
3L	24020658	3L_24020658_SNP [dm3] 3L_24027558_SNP [dm6]	C	A	2.803e^-4	1	UPSTREAM CG40045 INTERGENIC
3L	3007871	3L_3007871_SNP [dm3] 3L_3007871_SNP [dm6]	G	A	2.811e^-4	1	INTRON FMRFaR
3L	12484249	3L_12484249_SNP [dm3] 3L_12491149_SNP [dm6]	T	A	2.825e^-4	1	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 EXON CR45681	TF binding site mE1_TFBS_Trl
X	10399304	X_10399304_SNP [dm3] X_10505271_SNP [dm6]	A	T	2.825e^-4	1	INTRON spri
X	21896150	X_21896150_SNP [dm3] X_22494314_SNP [dm6]	A	G	2.831e^-4	1	INTRON l_1_G0196
2R	14452283	2R_14452283_SNP [dm3] 2R_18564778_SNP [dm6]	G	A	2.832e^-4	1	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4585945	X_4585945_SNP [dm3] X_4691912_SNP [dm6]	C	T	2.833e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	22082647	3R_22082647_SNP [dm3] 3R_26256925_SNP [dm6]	G	A	2.833e^-4	1	SPLICE_SITE_REGION Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12482522	3L_12482522_SNP [dm3] 3L_12489422_SNP [dm6]	C	T	2.841e^-4	1	UPSTREAM CR45681 INTRON CG10660
3R	1615100	3R_1615100_SNP [dm3] 3R_5789378_SNP [dm6]	T	C	2.847e^-4	1	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	1615105	3R_1615105_SNP [dm3] 3R_5789383_SNP [dm6]	C	T	2.847e^-4	1	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	16337918	3L_16337918_SNP [dm3] 3L_16344818_SNP [dm6]	C	T	2.849e^-4	1	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	2.857e^-4	1	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
3L	13486704	3L_13486704_SNP [dm3] 3L_13493604_SNP [dm6]	A	T	2.865e^-4	1	INTRON Tgi
2R	9523880	2R_9523880_SNP [dm3] 2R_13636375_SNP [dm6]	G	A	2.866e^-4	1	INTRON fas
X	11895594	X_11895594_SNP [dm3] X_12001561_SNP [dm6]	C	A	2.873e^-4	1	INTRON fw
2L	12212420	2L_12212420_SNP [dm3] 2L_12212420_SNP [dm6]	A	C	2.910e^-4	1	INTRON aret
3L	2827023	3L_2827023_SNP [dm3] 3L_2827023_SNP [dm6]	C	A	2.911e^-4	1	INTRON CG43444
X	14156606	X_14156606_SNP [dm3] X_14262573_SNP [dm6]	T	C	2.920e^-4	1	INTRON CG1461
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	2.921e^-4	1	INTRON twi & 1 other
2R	9791388	2R_9791388_SNP [dm3] 2R_13903883_SNP [dm6]	C	T	2.923e^-4	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15626650	2L_15626650_SNP [dm3] 2L_15626650_SNP [dm6]	T	G	2.923e^-4	1	INTERGENIC
X	2088787	X_2088787_SNP [dm3] X_2194754_SNP [dm6]	G	A	2.924e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3784077	3L_3784077_SNP [dm3] 3L_3784077_SNP [dm6]	C	G	2.929e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7274674	2L_7274674_SNP [dm3] 2L_7274674_SNP [dm6]	G	C	2.937e^-4	1	INTRON Wnt4
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	2.942e^-4	1	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16336687	3L_16336687_SNP [dm3] 3L_16343587_SNP [dm6]	C	T	2.947e^-4	1	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	2.949e^-4	1	INTRON a
X	16428015	X_16428015_SNP [dm3] X_16533982_SNP [dm6]	T	A	2.949e^-4	1	UPSTREAM para INTERGENIC
X	6078425	X_6078425_SNP [dm3] X_6184392_SNP [dm6]	G	A	2.964e^-4	1	INTRON Ca-alpha1T
2R	16555888	2R_16555888_DEL [dm3] 2R_20668383_DEL [dm6]	ATAAAACCTTTTACATTTAG...	A	2.992e^-4	1	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
X	12156761	X_12156761_SNP [dm3] X_12262728_SNP [dm6]	A	G	2.996e^-4	1	INTRON Ten-a
2L	18950671	2L_18950671_SNP [dm3] 2L_18950671_SNP [dm6]	C	A	3.000e^-4	1	NON_SYNONYMOUS_CODING CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_sens
X	11895599	X_11895599_SNP [dm3] X_12001566_SNP [dm6]	T	C	3.008e^-4	1	INTRON fw
X	7943668	X_7943668_SNP [dm3] X_8049635_SNP [dm6]	G	A	3.010e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3L	9686227	3L_9686227_SNP [dm3] 3L_9693127_SNP [dm6]	G	A	3.014e^-4	1	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	1615087	3R_1615087_SNP [dm3] 3R_5789365_SNP [dm6]	G	A	3.014e^-4	1	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2R	1504828	2R_1504828_SNP [dm3] 2R_5617323_SNP [dm6]	C	G	3.016e^-4	1	INTERGENIC
3L	16337635	3L_16337635_SNP [dm3] 3L_16344535_SNP [dm6]	G	A	3.018e^-4	1	NON_SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	3.024e^-4	1	INTRON Pkc53E
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	3.038e^-4	1	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
3R	24938638	3R_24938638_SNP [dm3] 3R_29112916_SNP [dm6]	A	C	3.047e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13832476	2L_13832476_SNP [dm3] 2L_13832476_SNP [dm6]	G	A	3.057e^-4	1	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	8017530	3L_8017530_SNP [dm3] 3L_8024430_SNP [dm6]	C	T	3.059e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	3.060e^-4	1	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	9683712	3L_9683712_SNP [dm3] 3L_9690612_SNP [dm6]	C	A	3.068e^-4	1	INTRON CG6767
X	6078608	X_6078608_SNP [dm3] X_6184575_SNP [dm6]	G	C	3.079e^-4	1	INTRON Ca-alpha1T
2L	3128793	2L_3128793_SNP [dm3] 2L_3128793_SNP [dm6]	C	T	3.084e^-4	1	NON_SYNONYMOUS_CODING CG15403 INTRON toc
X	4530158	X_4530158_SNP [dm3] X_4636125_SNP [dm6]	A	C	3.089e^-4	1	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	16740696	X_16740696_SNP [dm3] X_16846663_SNP [dm6]	G	C	3.092e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	3.098e^-4	1	INTRON CG13579
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	3.098e^-4	1	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18152648	2L_18152648_SNP [dm3] 2L_18152648_SNP [dm6]	A	G	3.098e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	15481923	X_15481923_SNP [dm3] X_15587890_SNP [dm6]	G	A	3.110e^-4	1	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10810655	3L_10810655_SNP [dm3] 3L_10817555_SNP [dm6]	T	C	3.111e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3R	14086585	3R_14086585_SNP [dm3] 3R_18260863_SNP [dm6]	T	C	3.112e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	3.116e^-4	1	UTR_3_PRIME CG31030
2R	8326865	2R_8326865_INS [dm3] 2R_12439360_INS [dm6]	A	ATCTG	3.128e^-4	1	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8527124	3R_8527124_SNP [dm3] 3R_12701402_SNP [dm6]	C	T	3.131e^-4	1	INTRON Past1
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	3.141e^-4	1	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
3R	3168071	3R_3168071_SNP [dm3] 3R_7342349_SNP [dm6]	C	T	3.144e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	3.155e^-4	1	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	3.166e^-4	1	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	3.172e^-4	1	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	3.178e^-4	1	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	3.185e^-4	1	UTR_3_PRIME Sema-2a
2L	10936034	2L_10936034_SNP [dm3] 2L_10936034_SNP [dm6]	C	T	3.195e^-4	1	UPSTREAM CG14072 INTRON dpr2
3R	8455907	3R_8455907_SNP [dm3] 3R_12630185_SNP [dm6]	T	A	3.198e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3
3R	14091042	3R_14091042_DEL [dm3] 3R_18265320_DEL [dm6]	ATTAGTA	GG	3.200e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16134519	3R_16134519_SNP [dm3] 3R_20308797_SNP [dm6]	C	T	3.205e^-4	1	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17004153	3R_17004153_INS [dm3] 3R_21178431_INS [dm6]	T	TT	3.207e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5394522	X_5394522_SNP [dm3] X_5500489_SNP [dm6]	T	G	3.207e^-4	1	SYNONYMOUS_CODING CG32762 UPSTREAM CG4151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	3.211e^-4	1	UTR_3_PRIME hec DOWNSTREAM fne
X	12156697	X_12156697_DEL [dm3] X_12262664_DEL [dm6]	TT	T	3.211e^-4	1	INTRON Ten-a
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	3.215e^-4	1	INTRON CG34377
3L	3008320	3L_3008320_SNP [dm3] 3L_3008320_SNP [dm6]	C	A	3.222e^-4	1	INTRON FMRFaR
3L	24502653	3L_24502653_SNP [dm3] 3L_24509553_SNP [dm6]	T	C	3.225e^-4	1	INTERGENIC
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	3.228e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	19388363	3R_19388363_SNP [dm3] 3R_23562641_SNP [dm6]	A	T	3.232e^-4	1	INTRON beat-IV
3R	19388370	3R_19388370_SNP [dm3] 3R_23562648_SNP [dm6]	G	C	3.232e^-4	1	INTRON beat-IV
2R	17042675	2R_17042675_SNP [dm3] 2R_21155170_SNP [dm6]	T	G	3.233e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22164112	X_22164112_SNP [dm3] X_22762276_SNP [dm6]	A	C	3.234e^-4	1	INTRON CR44997
X	3522536	X_3522536_SNP [dm3] X_3628503_SNP [dm6]	C	A	3.236e^-4	1	INTRON AstA-R1
3L	11625616	3L_11625616_SNP [dm3] 3L_11632516_SNP [dm6]	T	A	3.237e^-4	1	DOWNSTREAM CR45158 INTRON CG32091
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	3.242e^-4	1	INTRON Eip63E
3R	17755562	3R_17755562_SNP [dm3] 3R_21929840_SNP [dm6]	T	C	3.252e^-4	1	INTERGENIC
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	3.253e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	3.257e^-4	1	NON_SYNONYMOUS_CODING mbc
3R	1615122	3R_1615122_INS [dm3] 3R_5789400_INS [dm6]	A	AT	3.286e^-4	1	UPSTREAM Rpn5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	3.291e^-4	1	INTERGENIC
2R	8452930	2R_8452930_SNP [dm3] 2R_12565425_SNP [dm6]	G	C	3.296e^-4	1	UPSTREAM CG33775 & 1 other INTERGENIC
2L	10071131	2L_10071131_SNP [dm3] 2L_10071131_SNP [dm6]	G	A	3.299e^-4	1	INTRON CG44153
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	3.313e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	3.313e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	17090370	2R_17090370_SNP [dm3] 2R_21202865_SNP [dm6]	C	T	3.314e^-4	1	UPSTREAM Glycogenin INTRON Glycogenin & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
X	10014440	X_10014440_SNP [dm3] X_10120407_SNP [dm6]	T	C	3.324e^-4	1	INTRON RhoU & 1 other
3L	3947457	3L_3947457_SNP [dm3] 3L_3947457_SNP [dm6]	T	C	3.324e^-4	1	UPSTREAM CG10853 DOWNSTREAM CG14982 INTERGENIC
X	21923458	X_21923458_SNP [dm3] X_22521622_SNP [dm6]	A	T	3.327e^-4	1	INTRON CG17600
X	16756835	X_16756835_SNP [dm3] X_16862802_SNP [dm6]	C	A	3.332e^-4	1	INTRON CG13003
3R	22094037	3R_22094037_SNP [dm3] 3R_26268315_SNP [dm6]	T	C	3.335e^-4	1	INTRON CG6154
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	3.338e^-4	1	INTRON CG13917
2L	13832377	2L_13832377_SNP [dm3] 2L_13832377_SNP [dm6]	T	G	3.341e^-4	1	NON_SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
3R	25087870	3R_25087870_SNP [dm3] 3R_29262148_SNP [dm6]	G	C	3.344e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18733570	3R_18733570_SNP [dm3] 3R_22907848_SNP [dm6]	T	A	3.350e^-4	1	INTRON klg
2L	4198265	2L_4198265_SNP [dm3] 2L_4198265_SNP [dm6]	A	G	3.365e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	3.394e^-4	1	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7275096	2L_7275096_SNP [dm3] 2L_7275096_SNP [dm6]	C	G	3.397e^-4	1	INTRON Wnt4	TF binding site BDTNP1_TFBS_da
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	3.398e^-4	1	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	4891649	2L_4891649_SNP [dm3] 2L_4891649_SNP [dm6]	A	C	3.407e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	3.421e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8707098	2L_8707098_SNP [dm3] 2L_8707098_SNP [dm6]	C	T	3.434e^-4	1	SYNONYMOUS_CODING CG9314 INTRON Hnf4
2L	12511136	2L_12511136_SNP [dm3] 2L_12511136_SNP [dm6]	A	G	3.459e^-4	1	INTRON bun
2L	8707580	2L_8707580_SNP [dm3] 2L_8707580_SNP [dm6]	T	A	3.469e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	3.491e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	24938256	3R_24938256_SNP [dm3] 3R_29112534_SNP [dm6]	G	A	3.494e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	24938651	3R_24938651_INS [dm3] 3R_29112929_INS [dm6]	A	ATAT	3.494e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24938653	3R_24938653_SNP [dm3] 3R_29112931_SNP [dm6]	G	T	3.494e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24938658	3R_24938658_INS [dm3] 3R_29112936_INS [dm6]	T	TTATATTCTAT...	3.494e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	3.501e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7181683	X_7181683_SNP [dm3] X_7287650_SNP [dm6]	C	T	3.505e^-4	1	DOWNSTREAM unc-119 INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens mE1_TFBS_Ubx
3L	2804728	3L_2804728_SNP [dm3] 3L_2804728_SNP [dm6]	C	A	3.510e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	9679860	3L_9679860_SNP [dm3] 3L_9686760_SNP [dm6]	T	C	3.518e^-4	1	DOWNSTREAM CG16719 INTRON CG6767
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	3.519e^-4	1	INTERGENIC
3L	12750309	3L_12750309_SNP [dm3] 3L_12757209_SNP [dm6]	C	G	3.523e^-4	1	NON_SYNONYMOUS_CODING CG32113
X	19228775	X_19228775_SNP [dm3] X_19334742_SNP [dm6]	C	T	3.525e^-4	1	INTRON nAChRalpha7
2R	10535319	2R_10535319_SNP [dm3] 2R_14647814_SNP [dm6]	G	A	3.526e^-4	1	INTERGENIC
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	3.528e^-4	1	DOWNSTREAM Diedel2 INTRON alph
3L	3009006	3L_3009006_SNP [dm3] 3L_3009006_SNP [dm6]	C	T	3.529e^-4	1	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	3.530e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	18174670	2L_18174670_SNP [dm3] 2L_18174670_SNP [dm6]	T	A	3.537e^-4	1	INTRON CG42750
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	3.540e^-4	1	NON_SYNONYMOUS_CODING CG13618
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	3.550e^-4	1	SYNONYMOUS_CODING kel UTR_3_PRIME kel
X	11895577	X_11895577_SNP [dm3] X_12001544_SNP [dm6]	G	A	3.555e^-4	1	INTRON fw
X	11895579	X_11895579_SNP [dm3] X_12001546_SNP [dm6]	A	T	3.555e^-4	1	INTRON fw
3R	22070682	3R_22070682_SNP [dm3] 3R_26244960_SNP [dm6]	T	C	3.561e^-4	1	INTRON CR42745
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	3.571e^-4	1	UTR_3_PRIME hec DOWNSTREAM fne
2L	19317940	2L_19317940_SNP [dm3] 2L_19317940_SNP [dm6]	T	G	3.573e^-4	1	INTERGENIC
2L	7436189	2L_7436189_SNP [dm3] 2L_7436189_SNP [dm6]	G	A	3.581e^-4	1	INTERGENIC
3L	7804211	3L_7804211_SNP [dm3] 3L_7811111_SNP [dm6]	A	G	3.583e^-4	1	DOWNSTREAM Pdp1 INTERGENIC
X	16559389	X_16559389_SNP [dm3] X_16665356_SNP [dm6]	T	C	3.584e^-4	1	UPSTREAM CG15865 INTRON r
3R	20517771	3R_20517771_DEL [dm3] 3R_24692049_DEL [dm6]	TT	T	3.588e^-4	1	INTRON slo
3R	5306212	3R_5306212_SNP [dm3] 3R_9480490_SNP [dm6]	G	A	3.605e^-4	1	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19329736	2L_19329736_SNP [dm3] 2L_19329736_SNP [dm6]	T	G	3.605e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1928428	2L_1928428_SNP [dm3] 2L_1928428_SNP [dm6]	C	T	3.613e^-4	1	UTR_5_PRIME CG7337 INTRON CG7337
2L	14059017	2L_14059017_SNP [dm3] 2L_14059017_SNP [dm6]	T	C	3.618e^-4	1	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9677447	3L_9677447_SNP [dm3] 3L_9684347_SNP [dm6]	T	A	3.626e^-4	1	UTR_3_PRIME CG6767 UPSTREAM CG16719 DOWNSTREAM alphaTub67C
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	3.631e^-4	1	INTRON Sema-2b
3R	17004182	3R_17004182_SNP [dm3] 3R_21178460_SNP [dm6]	G	C	3.648e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	767537	3L_767537_SNP [dm3] 3L_767537_SNP [dm6]	C	T	3.652e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	17437306	2R_17437306_SNP [dm3] 2R_21549801_SNP [dm6]	A	C	3.661e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	3.661e^-4	1	UTR_3_PRIME CG17129
2R	18887422	2R_18887422_SNP [dm3] 2R_22999899_SNP [dm6]	G	C	3.663e^-4	1	INTRON twi
3R	1617877	3R_1617877_SNP [dm3] 3R_5792155_SNP [dm6]	G	A	3.699e^-4	1	SYNONYMOUS_CODING CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
2R	16514570	2R_16514570_SNP [dm3] 2R_20627065_SNP [dm6]	A	C	3.700e^-4	1	NON_SYNONYMOUS_CODING CG16742
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	3.703e^-4	1	INTRON CG34362
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	3.707e^-4	1	INTRON CG31637
2R	9874410	2R_9874410_SNP [dm3] 2R_13986905_SNP [dm6]	C	G	3.709e^-4	1	UTR_3_PRIME RN-tre DOWNSTREAM RN-tre INTRON RN-tre
2R	19181660	2R_19181660_SNP [dm3] 2R_23294137_SNP [dm6]	T	G	3.716e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13873470	X_13873470_SNP [dm3] X_13979437_SNP [dm6]	C	T	3.720e^-4	1	INTRON mamo
3R	20274066	3R_20274066_SNP [dm3] 3R_24448344_SNP [dm6]	G	T	3.720e^-4	1	INTRON nAChRalpha1
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	3.736e^-4	1	INTRON CG34362
3L	3007581	3L_3007581_SNP [dm3] 3L_3007581_SNP [dm6]	A	G	3.741e^-4	1	INTRON FMRFaR
2R	9638129	2R_9638129_SNP [dm3] 2R_13750624_SNP [dm6]	T	A	3.742e^-4	1	INTERGENIC
2L	4891709	2L_4891709_SNP [dm3] 2L_4891709_SNP [dm6]	G	A	3.743e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	3.745e^-4	1	INTRON slo
3L	7936394	3L_7936394_SNP [dm3] 3L_7943294_SNP [dm6]	C	A	3.746e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	3.753e^-4	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1411266	2L_1411266_INS [dm3] 2L_1411266_INS [dm6]	T	TT	3.757e^-4	1	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	12086473	3L_12086473_INS [dm3] 3L_12093373_INS [dm6]	G	GCACCG	3.766e^-4	1	INTERGENIC
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	3.768e^-4	1	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
X	6533066	X_6533066_DEL [dm3] X_6639033_DEL [dm6]	TTT	T	3.770e^-4	1	INTRON pigs
2L	18108442	2L_18108442_SNP [dm3] 2L_18108442_SNP [dm6]	G	A	3.771e^-4	1	INTERGENIC
2R	14912751	2R_14912751_SNP [dm3] 2R_19025246_SNP [dm6]	G	C	3.777e^-4	1	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15968214	3L_15968214_SNP [dm3] 3L_15975114_SNP [dm6]	T	C	3.789e^-4	1	UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
2R	6588378	2R_6588378_SNP [dm3] 2R_10700873_SNP [dm6]	T	C	3.797e^-4	1	INTRON stan
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	3.804e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.811e^-4	1	INTRON jigr1
2L	5978025	2L_5978025_SNP [dm3] 2L_5978025_SNP [dm6]	C	T	3.828e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	22048485	X_22048485_SNP [dm3] X_22646649_SNP [dm6]	G	C	3.833e^-4	1	INTERGENIC
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	3.833e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2689269	2L_2689269_SNP [dm3] 2L_2689269_SNP [dm6]	G	A	3.838e^-4	1	INTRON CG31690
2L	19365731	2L_19365731_SNP [dm3] 2L_19365731_SNP [dm6]	A	G	3.848e^-4	1	DOWNSTREAM CG13086 INTERGENIC
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	3.852e^-4	1	INTRON CG33700
2R	15986737	2R_15986737_SNP [dm3] 2R_20099232_SNP [dm6]	G	A	3.854e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16335959	3L_16335959_SNP [dm3] 3L_16342859_SNP [dm6]	C	G	3.856e^-4	1	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
2R	4394875	2R_4394875_SNP [dm3] 2R_8507370_SNP [dm6]	A	C	3.861e^-4	1	INTRON mtt
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	3.862e^-4	1	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	3.867e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	3800282	2L_3800282_SNP [dm3] 2L_3800282_SNP [dm6]	C	T	3.867e^-4	1	SPLICE_SITE_REGION CG3921 INTRON CG3921
2L	6866877	2L_6866877_SNP [dm3] 2L_6866877_SNP [dm6]	G	T	3.872e^-4	1	INTRON Nha1
2L	7447943	2L_7447943_SNP [dm3] 2L_7447943_SNP [dm6]	A	C	3.875e^-4	1	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
3R	17755641	3R_17755641_SNP [dm3] 3R_21929919_SNP [dm6]	T	A	3.879e^-4	1	INTERGENIC
3L	12882661	3L_12882661_SNP [dm3] 3L_12889561_SNP [dm6]	A	T	3.880e^-4	1	UPSTREAM CG43894 DOWNSTREAM CG14120 EXON CR45748
X	14124820	X_14124820_SNP [dm3] X_14230787_SNP [dm6]	A	G	3.893e^-4	1	SYNONYMOUS_CODING CG42271	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	8427241	3R_8427241_SNP [dm3] 3R_12601519_SNP [dm6]	A	T	3.898e^-4	1	INTERGENIC
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	3.910e^-4	1	INTERGENIC
2L	21915159	2L_21915159_SNP [dm3] 2L_21915159_SNP [dm6]	T	A	3.911e^-4	1	NON_SYNONYMOUS_CODING CG31600
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	3.924e^-4	1	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	19011909	3L_19011909_SNP [dm3] 3L_19018809_SNP [dm6]	G	A	3.940e^-4	1	INTRON nkd
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	3.952e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	13851792	2L_13851792_SNP [dm3] 2L_13851792_SNP [dm6]	C	G	3.959e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	3.962e^-4	1	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14747768	3R_14747768_SNP [dm3] 3R_18922046_SNP [dm6]	G	T	3.964e^-4	1	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl
3L	3610828	3L_3610828_SNP [dm3] 3L_3610828_SNP [dm6]	A	G	3.964e^-4	1	DOWNSTREAM Eip63E INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9638054	2R_9638054_SNP [dm3] 2R_13750549_SNP [dm6]	A	G	3.965e^-4	1	INTERGENIC
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	3.968e^-4	1	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	3.971e^-4	1	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	12028219	3L_12028219_SNP [dm3] 3L_12035119_SNP [dm6]	G	A	3.972e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	21099328	3R_21099328_SNP [dm3] 3R_25273606_SNP [dm6]	G	A	3.982e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	22087373	3R_22087373_SNP [dm3] 3R_26261651_SNP [dm6]	T	A	3.983e^-4	1	UPSTREAM Ald DOWNSTREAM CR44321 INTERGENIC
2R	13745476	2R_13745476_SNP [dm3] 2R_17857971_SNP [dm6]	A	T	3.986e^-4	1	INTRON olf186-F
3L	677986	3L_677986_SNP [dm3] 3L_677986_SNP [dm6]	A	G	3.991e^-4	1	UTR_3_PRIME CG17129
3L	18590294	3L_18590294_SNP [dm3] 3L_18597194_SNP [dm6]	C	T	3.997e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2R	18540103	2R_18540103_SNP [dm3] 2R_22652598_SNP [dm6]	A	T	4.007e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	4.009e^-4	1	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18139105	2L_18139105_SNP [dm3] 2L_18139105_SNP [dm6]	C	T	4.013e^-4	1	UTR_3_PRIME Socs36E
3L	18364536	3L_18364536_INS [dm3] 3L_18371436_INS [dm6]	T	TT	4.013e^-4	1	INTERGENIC
X	12146757	X_12146757_SNP [dm3] X_12252724_SNP [dm6]	G	A	4.014e^-4	1	INTRON Ten-a
X	16758119	X_16758119_SNP [dm3] X_16864086_SNP [dm6]	A	G	4.016e^-4	1	INTRON CG13003
3L	14371998	3L_14371998_SNP [dm3] 3L_14378898_SNP [dm6]	G	T	4.022e^-4	1	INTERGENIC
3R	21624550	3R_21624550_SNP [dm3] 3R_25798828_SNP [dm6]	C	T	4.024e^-4	1	INTERGENIC
2R	7507086	2R_7507086_DEL [dm3] 2R_11619581_DEL [dm6]	TT	T	4.029e^-4	1	UTR_3_PRIME CG9005 UPSTREAM Egm DOWNSTREAM CG9005	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	24762692	3R_24762692_SNP [dm3] 3R_28936970_SNP [dm6]	C	T	4.033e^-4	1	INTRON CG14521
X	17166247	X_17166247_SNP [dm3] X_17272214_SNP [dm6]	A	T	4.034e^-4	1	NON_SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21851605	3R_21851605_SNP [dm3] 3R_26025883_SNP [dm6]	T	G	4.034e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21946932	3R_21946932_SNP [dm3] 3R_26121210_SNP [dm6]	G	A	4.036e^-4	1	INTRON CG31324
2R	17945640	2R_17945640_SNP [dm3] 2R_22058135_SNP [dm6]	G	T	4.040e^-4	1	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	4.040e^-4	1	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16407134	3R_16407134_SNP [dm3] 3R_20581412_SNP [dm6]	A	G	4.049e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407141	3R_16407141_SNP [dm3] 3R_20581419_SNP [dm6]	G	T	4.049e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407146	3R_16407146_SNP [dm3] 3R_20581424_SNP [dm6]	G	C	4.049e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	20676835	3R_20676835_SNP [dm3] 3R_24851113_SNP [dm6]	A	C	4.060e^-4	1	SYNONYMOUS_CODING CG7006 UPSTREAM nct DOWNSTREAM Esp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	16768902	2R_16768902_SNP [dm3] 2R_20881397_SNP [dm6]	C	T	4.062e^-4	1	INTRON Cib2	TF binding site mE1_TFBS_inv
3L	3598631	3L_3598631_SNP [dm3] 3L_3598631_SNP [dm6]	C	T	4.072e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_cad
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	4.077e^-4	1	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3L	14296064	3L_14296064_SNP [dm3] 3L_14302964_SNP [dm6]	C	A	4.081e^-4	1	INTRON fz
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	4.081e^-4	1	INTRON Eip63E
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	4.082e^-4	1	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3L	9685859	3L_9685859_SNP [dm3] 3L_9692759_SNP [dm6]	T	C	4.096e^-4	1	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	4.116e^-4	1	UPSTREAM CG8997 & 1 other INTRON CenG1A
X	19228806	X_19228806_INS [dm3] X_19334773_INS [dm6]	T	TTGTTAACAAAA...	4.127e^-4	1	INTRON nAChRalpha7
2L	7240844	2L_7240844_SNP [dm3] 2L_7240844_SNP [dm6]	G	A	4.134e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
2R	3580981	2R_3580981_SNP [dm3] 2R_7693476_SNP [dm6]	G	A	4.137e^-4	1	INTRON CG1399	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20282294	3R_20282294_SNP [dm3] 3R_24456572_SNP [dm6]	C	T	4.143e^-4	1	UTR_5_PRIME nAChRalpha1
3L	15287505	3L_15287505_DEL [dm3] 3L_15294405_DEL [dm6]	GGGCAAATGCAGAAATG...	G	4.155e^-4	1	INTERGENIC
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	4.161e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	4.162e^-4	1	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11230900	2L_11230900_SNP [dm3] 2L_11230900_SNP [dm6]	G	A	4.163e^-4	1	INTRON ab
2R	9523837	2R_9523837_SNP [dm3] 2R_13636332_SNP [dm6]	G	A	4.163e^-4	1	INTRON fas
2L	18099946	2L_18099946_SNP [dm3] 2L_18099946_SNP [dm6]	C	A	4.181e^-4	1	INTERGENIC
2R	18674004	2R_18674004_SNP [dm3] 2R_22786499_SNP [dm6]	A	G	4.190e^-4	1	INTRON CG42260
2R	9638150	2R_9638150_SNP [dm3] 2R_13750645_SNP [dm6]	G	A	4.203e^-4	1	INTERGENIC
2L	19363646	2L_19363646_SNP [dm3] 2L_19363646_SNP [dm6]	C	A	4.218e^-4	1	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	4.222e^-4	1	INTRON CG13917
3L	697292	3L_697292_SNP [dm3] 3L_697292_SNP [dm6]	G	A	4.234e^-4	1	INTRON CG13894	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	4585943	X_4585943_SNP [dm3] X_4691910_SNP [dm6]	G	A	4.237e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	16400952	X_16400952_SNP [dm3] X_16506919_SNP [dm6]	C	G	4.240e^-4	1	INTRON para
2R	6180657	2R_6180657_INS [dm3] 2R_10293152_INS [dm6]	A	AATTGAGTAGC...	4.242e^-4	1	INTRON CAP
3L	14761089	3L_14761089_SNP [dm3] 3L_14767989_SNP [dm6]	T	G	4.243e^-4	1	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
2L	14448359	2L_14448359_SNP [dm3] 2L_14448359_SNP [dm6]	T	C	4.247e^-4	1	DOWNSTREAM CR45726 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19262817	3L_19262817_INS [dm3] 3L_19269717_INS [dm6]	A	ATGGTTTA	4.248e^-4	1	UPSTREAM CG9629 DOWNSTREAM CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	10644836	3L_10644836_SNP [dm3] 3L_10651736_SNP [dm6]	G	A	4.248e^-4	1	INTRON CG32066
3L	11109297	3L_11109297_SNP [dm3] 3L_11116197_SNP [dm6]	G	T	4.257e^-4	1	SYNONYMOUS_CODING fd68A
2R	11333645	2R_11333645_SNP [dm3] 2R_15446140_SNP [dm6]	G	A	4.262e^-4	1	INTRON CG43729
2L	4813088	2L_4813088_SNP [dm3] 2L_4813088_SNP [dm6]	A	C	4.262e^-4	1	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	12079727	3R_12079727_SNP [dm3] 3R_16254005_SNP [dm6]	T	G	4.268e^-4	1	INTRON tara	TF binding site BDTNP1_TFBS_twi
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	4.274e^-4	1	INTERGENIC
3L	9689139	3L_9689139_SNP [dm3] 3L_9696039_SNP [dm6]	G	A	4.275e^-4	1	UPSTREAM CG6767 DOWNSTREAM CR45121 INTRON CG6767	TF binding site mE1_TFBS_Trl
2R	15039037	2R_15039037_SNP [dm3] 2R_19151532_SNP [dm6]	T	C	4.275e^-4	1	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24708925	3R_24708925_SNP [dm3] 3R_28883203_SNP [dm6]	T	C	4.279e^-4	1	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
2L	9561278	2L_9561278_SNP [dm3] 2L_9561278_SNP [dm6]	C	T	4.280e^-4	1	UPSTREAM jp INTRON jp
2L	10374235	2L_10374235_SNP [dm3] 2L_10374235_SNP [dm6]	T	G	4.280e^-4	1	UTR_3_PRIME CG33303 UPSTREAM rho-5	TF binding site mE1_TFBS_cad
3R	22094473	3R_22094473_SNP [dm3] 3R_26268751_SNP [dm6]	C	T	4.286e^-4	1	SYNONYMOUS_CODING CG6154	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	11680182	3L_11680182_SNP [dm3] 3L_11687082_SNP [dm6]	G	A	4.287e^-4	1	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1598600	2L_1598600_SNP [dm3] 2L_1598600_SNP [dm6]	A	T	4.287e^-4	1	INTRON haf & 1 other
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	4.289e^-4	1	UPSTREAM CG1722 INTRON CG32521
3R	17004124	3R_17004124_SNP [dm3] 3R_21178402_SNP [dm6]	A	G	4.296e^-4	1	SPLICE_SITE_REGION SNF4Agamma INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	4.308e^-4	1	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	11018907	2L_11018907_SNP [dm3] 2L_11018907_SNP [dm6]	A	T	4.322e^-4	1	DOWNSTREAM CG14913 INTRON Samuel
3L	9506793	3L_9506793_SNP [dm3] 3L_9513693_SNP [dm6]	C	G	4.329e^-4	1	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
2L	18169120	2L_18169120_SNP [dm3] 2L_18169120_SNP [dm6]	A	C	4.337e^-4	1	INTRON CG42750	TF binding site mE1_TFBS_inv
3R	26089889	3R_26089889_SNP [dm3] 3R_30264167_SNP [dm6]	T	G	4.341e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	4.351e^-4	1	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
X	4483686	X_4483686_SNP [dm3] X_4589653_SNP [dm6]	C	G	4.356e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4307576	3L_4307576_SNP [dm3] 3L_4307576_SNP [dm6]	T	C	4.373e^-4	1	UTR_5_PRIME dyl
2L	8979803	2L_8979803_INS [dm3] 2L_8979803_INS [dm6]	T	TT	4.377e^-4	1	UPSTREAM CG18662 INTRON CG13101
2L	1241812	2L_1241812_SNP [dm3] 2L_1241812_SNP [dm6]	C	A	4.396e^-4	1	SYNONYMOUS_CODING CG5397
2L	8708393	2L_8708393_SNP [dm3] 2L_8708393_SNP [dm6]	T	A	4.396e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
3R	14339271	3R_14339271_INS [dm3] 3R_18513549_INS [dm6]	A	AGA	4.398e^-4	1	UTR_5_PRIME fru INTRON fru
3R	20505837	3R_20505837_SNP [dm3] 3R_24680115_SNP [dm6]	A	G	4.401e^-4	1	INTRON slo
2L	2877508	2L_2877508_SNP [dm3] 2L_2877508_SNP [dm6]	A	T	4.410e^-4	1	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
2L	3854071	2L_3854071_SNP [dm3] 2L_3854071_SNP [dm6]	C	T	4.423e^-4	1	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15168758	3R_15168758_SNP [dm3] 3R_19343036_SNP [dm6]	G	A	4.425e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9509075	3L_9509075_SNP [dm3] 3L_9515975_SNP [dm6]	A	T	4.443e^-4	1	INTRON CG33700
3L	4984014	3L_4984014_SNP [dm3] 3L_4984014_SNP [dm6]	T	C	4.443e^-4	1	INTRON Con
2L	13274812	2L_13274812_SNP [dm3] 2L_13274812_SNP [dm6]	A	C	4.452e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	4.459e^-4	1	INTRON CG34114
X	12146987	X_12146987_SNP [dm3] X_12252954_SNP [dm6]	C	T	4.470e^-4	1	INTRON Ten-a
2R	7099547	2R_7099547_SNP [dm3] 2R_11212042_SNP [dm6]	G	A	4.475e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20155689	2R_20155689_SNP [dm3] 2R_24268166_SNP [dm6]	G	C	4.491e^-4	1	NON_SYNONYMOUS_CODING CG13577
3L	9640427	3L_9640427_SNP [dm3] 3L_9647327_SNP [dm6]	C	G	4.493e^-4	1	INTRON fry & 1 other
3L	9640444	3L_9640444_SNP [dm3] 3L_9647344_SNP [dm6]	G	C	4.493e^-4	1	INTRON fry & 1 other
2L	1245977	2L_1245977_SNP [dm3] 2L_1245977_SNP [dm6]	G	A	4.496e^-4	1	INTERGENIC
3R	22235658	3R_22235658_SNP [dm3] 3R_26409936_SNP [dm6]	G	A	4.512e^-4	1	INTERGENIC
3R	22235671	3R_22235671_SNP [dm3] 3R_26409949_SNP [dm6]	G	A	4.512e^-4	1	INTERGENIC
X	17892034	X_17892034_SNP [dm3] X_17998001_SNP [dm6]	T	C	4.514e^-4	1	INTRON Sh
3L	707651	3L_707651_SNP [dm3] 3L_707651_SNP [dm6]	A	G	4.516e^-4	1	DOWNSTREAM CkIIalpha-i3 INTRON CG13895	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16407332	3R_16407332_SNP [dm3] 3R_20581610_SNP [dm6]	C	T	4.527e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	7694673	2L_7694673_SNP [dm3] 2L_7694673_SNP [dm6]	C	T	4.532e^-4	1	SYNONYMOUS_CODING Tep2 DOWNSTREAM CG43235	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4892066	2L_4892066_SNP [dm3] 2L_4892066_SNP [dm6]	T	G	4.544e^-4	1	UPSTREAM CG3036 & 1 other DOWNSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
2R	18540129	2R_18540129_SNP [dm3] 2R_22652624_SNP [dm6]	C	A	4.554e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	4.559e^-4	1	INTRON cpo
3R	22091445	3R_22091445_SNP [dm3] 3R_26265723_SNP [dm6]	C	A	4.568e^-4	1	INTRON CG6154
2L	18156924	2L_18156924_SNP [dm3] 2L_18156924_SNP [dm6]	G	A	4.568e^-4	1	SYNONYMOUS_CODING CG5783 DOWNSTREAM CG15155 & 1 other
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	4.570e^-4	1	INTERGENIC
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	4.572e^-4	1	INTRON CG3009
3L	3008329	3L_3008329_SNP [dm3] 3L_3008329_SNP [dm6]	A	G	4.576e^-4	1	INTRON FMRFaR
X	4241475	X_4241475_SNP [dm3] X_4347442_SNP [dm6]	G	T	4.579e^-4	1	UPSTREAM norpA INTRON norpA
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	4.581e^-4	1	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	4.591e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19193324	2R_19193324_SNP [dm3] 2R_23305801_SNP [dm6]	C	A	4.597e^-4	1	INTERGENIC
2L	9706636	2L_9706636_SNP [dm3] 2L_9706636_SNP [dm6]	A	G	4.611e^-4	1	SPLICE_SITE_REGION pelo UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17366653	2R_17366653_SNP [dm3] 2R_21479148_SNP [dm6]	T	C	4.613e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	2160219	2L_2160219_SNP [dm3] 2L_2160219_SNP [dm6]	C	T	4.615e^-4	1	SYNONYMOUS_CODING aop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18134818	3L_18134818_SNP [dm3] 3L_18141718_SNP [dm6]	A	G	4.616e^-4	1	INTRON gk
3R	24480773	3R_24480773_SNP [dm3] 3R_28655051_SNP [dm6]	G	C	4.624e^-4	1	INTERGENIC
X	4484210	X_4484210_SNP [dm3] X_4590177_SNP [dm6]	T	C	4.624e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	11231636	X_11231636_SNP [dm3] X_11337603_SNP [dm6]	C	A	4.634e^-4	1	SYNONYMOUS_CODING Kap3
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	4.635e^-4	1	SYNONYMOUS_CODING CG31321
2R	16111499	2R_16111499_SNP [dm3] 2R_20223994_SNP [dm6]	A	C	4.640e^-4	1	INTERGENIC
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	4.642e^-4	1	INTRON psq
3R	18062192	3R_18062192_SNP [dm3] 3R_22236470_SNP [dm6]	C	T	4.643e^-4	1	INTRON SKIP
2R	16111502	2R_16111502_SNP [dm3] 2R_20223997_SNP [dm6]	G	A	4.644e^-4	1	INTERGENIC
X	13794562	X_13794562_SNP [dm3] X_13900529_SNP [dm6]	T	C	4.644e^-4	1	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15182840	X_15182840_SNP [dm3] X_15288807_SNP [dm6]	C	T	4.647e^-4	1	UPSTREAM CR44663 INTERGENIC
3R	3292002	3R_3292002_DEL [dm3] 3R_7466280_DEL [dm6]	AATGGTGGGAA...	A	4.648e^-4	1	INTERGENIC
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	4.657e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12824628	2L_12824628_SNP [dm3] 2L_12824628_SNP [dm6]	C	T	4.661e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
3R	3346247	3R_3346247_SNP [dm3] 3R_7520525_SNP [dm6]	C	T	4.662e^-4	1	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad
X	2932621	X_2932621_SNP [dm3] X_3038588_SNP [dm6]	C	T	4.663e^-4	1	INTRON kirre
X	3171322	X_3171322_SNP [dm3] X_3277289_SNP [dm6]	G	C	4.669e^-4	1	INTRON dnc
2L	9561442	2L_9561442_SNP [dm3] 2L_9561442_SNP [dm6]	C	A	4.677e^-4	1	INTRON jp
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	4.686e^-4	1	INTRON CG2082
3L	16330800	3L_16330800_INS [dm3] 3L_16337700_INS [dm6]	T	TAATAATAATAATAATAATA...	4.689e^-4	1	INTERGENIC
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	4.691e^-4	1	DOWNSTREAM CR44792 INTERGENIC
3L	13040896	3L_13040896_SNP [dm3] 3L_13047796_SNP [dm6]	A	T	4.700e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17383110	X_17383110_SNP [dm3] X_17489077_SNP [dm6]	C	G	4.701e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
2L	11018903	2L_11018903_SNP [dm3] 2L_11018903_SNP [dm6]	G	A	4.703e^-4	1	DOWNSTREAM CG14913 INTRON Samuel
2L	11018908	2L_11018908_INS [dm3] 2L_11018908_INS [dm6]	T	TGTCAAAACACATTTA...	4.703e^-4	1	DOWNSTREAM CG14913 INTRON Samuel
2L	6497753	2L_6497753_SNP [dm3] 2L_6497753_SNP [dm6]	T	C	4.703e^-4	1	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	4.705e^-4	1	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	4.713e^-4	1	DOWNSTREAM CG33460 INTRON CG33461
3R	16953626	3R_16953626_SNP [dm3] 3R_21127904_SNP [dm6]	C	T	4.714e^-4	1	UPSTREAM CG5793 & 1 other INTRON CG5793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19330984	2L_19330984_SNP [dm3] 2L_19330984_SNP [dm6]	T	G	4.735e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13207178	3L_13207178_SNP [dm3] 3L_13214078_SNP [dm6]	C	G	4.747e^-4	1	UPSTREAM tRNA:CR32127 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19250261	3R_19250261_SNP [dm3] 3R_23424539_SNP [dm6]	C	T	4.759e^-4	1	INTRON CG4374
X	16758456	X_16758456_SNP [dm3] X_16864423_SNP [dm6]	T	C	4.760e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3L	750430	3L_750430_SNP [dm3] 3L_750430_SNP [dm6]	A	G	4.777e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3L	11854901	3L_11854901_SNP [dm3] 3L_11861801_SNP [dm6]	C	T	4.779e^-4	1	INTRON CG44837
3L	7935822	3L_7935822_SNP [dm3] 3L_7942722_SNP [dm6]	C	T	4.784e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	3864036	2L_3864036_SNP [dm3] 2L_3864036_SNP [dm6]	C	T	4.792e^-4	1	SYNONYMOUS_CODING CG3964	TF binding site BDTNP1_TFBS_sna
3L	8435900	3L_8435900_SNP [dm3] 3L_8442800_SNP [dm6]	T	C	4.802e^-4	1	UPSTREAM Unr DOWNSTREAM CG6983 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14655097	2R_14655097_SNP [dm3] 2R_18767592_SNP [dm6]	G	A	4.811e^-4	1	INTRON Mctp
X	16758029	X_16758029_SNP [dm3] X_16863996_SNP [dm6]	C	T	4.828e^-4	1	INTRON CG13003
3L	19242905	3L_19242905_DEL [dm3] 3L_19249805_DEL [dm6]	ACTTAATTCATAA...	A	4.842e^-4	1	INTERGENIC
2L	10586705	2L_10586705_SNP [dm3] 2L_10586705_SNP [dm6]	T	C	4.854e^-4	1	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8563566	3L_8563566_SNP [dm3] 3L_8570466_SNP [dm6]	C	T	4.857e^-4	1	UTR_3_PRIME rhea DOWNSTREAM CR43910 INTRON rhea
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	4.863e^-4	1	INTRON CG9541
2L	19363373	2L_19363373_DEL [dm3] 2L_19363373_DEL [dm6]	GG	G	4.876e^-4	1	UPSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	16955852	3L_16955852_SNP [dm3] 3L_16962752_SNP [dm6]	A	G	4.883e^-4	1	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8673595	3L_8673595_SNP [dm3] 3L_8680495_SNP [dm6]	C	A	4.892e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	4.895e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	22675432	3R_22675432_SNP [dm3] 3R_26849710_SNP [dm6]	G	C	4.896e^-4	1	INTRON Lerp
2R	7837024	2R_7837024_SNP [dm3] 2R_11949519_SNP [dm6]	G	C	4.898e^-4	1	INTRON CG13188
3L	9509069	3L_9509069_SNP [dm3] 3L_9515969_SNP [dm6]	A	C	4.900e^-4	1	INTRON CG33700
X	16758873	X_16758873_SNP [dm3] X_16864840_SNP [dm6]	T	C	4.902e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	3272472	3R_3272472_SNP [dm3] 3R_7446750_SNP [dm6]	T	C	4.909e^-4	1	INTERGENIC
X	11702283	X_11702283_SNP [dm3] X_11808250_SNP [dm6]	T	C	4.917e^-4	1	DOWNSTREAM CG1578 INTERGENIC
2R	15899966	2R_15899966_DEL [dm3] 2R_20012461_DEL [dm6]	TGG	T	4.921e^-4	1	INTERGENIC	TF binding site mE1_TFBS_run
X	20265769	X_20265769_SNP [dm3] X_20394742_SNP [dm6]	G	T	4.934e^-4	1	UTR_5_PRIME HERC2 UPSTREAM Syx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14016472	3L_14016472_SNP [dm3] 3L_14023372_SNP [dm6]	T	C	4.941e^-4	1	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
3L	13486721	3L_13486721_SNP [dm3] 3L_13493621_SNP [dm6]	C	G	4.950e^-4	1	INTRON Tgi
3L	11759504	3L_11759504_SNP [dm3] 3L_11766404_SNP [dm6]	T	A	4.960e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	18189871	3R_18189871_SNP [dm3] 3R_22364149_SNP [dm6]	G	C	4.962e^-4	1	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
X	19053682	X_19053682_SNP [dm3] X_19159649_SNP [dm6]	A	G	4.980e^-4	1	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	702297	3L_702297_SNP [dm3] 3L_702297_SNP [dm6]	C	T	4.985e^-4	1	INTERGENIC
2L	16520481	2L_16520481_SNP [dm3] 2L_16520481_SNP [dm6]	T	C	4.990e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
3R	3170682	3R_3170682_SNP [dm3] 3R_7344960_SNP [dm6]	A	G	5.003e^-4	1	UPSTREAM CG31496 INTERGENIC
3L	23934155	3L_23934155_SNP [dm3] 3L_23941055_SNP [dm6]	G	T	5.007e^-4	1	INTRON CG40470
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	5.008e^-4	1	DOWNSTREAM CG3982 INTRON CG3967
3R	14221089	3R_14221089_SNP [dm3] 3R_18395367_SNP [dm6]	T	A	5.017e^-4	1	INTRON Vha100-2
3R	11181082	3R_11181082_SNP [dm3] 3R_15355360_SNP [dm6]	G	T	5.022e^-4	1	SPLICE_SITE_REGION Atg4b INTRON Atg4b
X	16740697	X_16740697_SNP [dm3] X_16846664_SNP [dm6]	A	C	5.055e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27248695	3R_27248695_SNP [dm3] 3R_31422973_SNP [dm6]	A	G	5.071e^-4	1	INTRON Gprk2
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	5.078e^-4	1	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12467848	2L_12467848_SNP [dm3] 2L_12467848_SNP [dm6]	C	T	5.079e^-4	1	INTRON bun	TF binding site mE1_TFBS_kn
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	5.080e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17048664	3L_17048664_SNP [dm3] 3L_17055564_SNP [dm6]	T	G	5.081e^-4	1	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2R	18338776	2R_18338776_SNP [dm3] 2R_22451271_SNP [dm6]	A	G	5.084e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	6977431	3R_6977431_SNP [dm3] 3R_11151709_SNP [dm6]	T	C	5.089e^-4	1	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3L	2255871	3L_2255871_SNP [dm3] 3L_2255871_SNP [dm6]	C	T	5.091e^-4	1	UTR_5_PRIME CG1275 INTRON CG1275	TF binding site mE1_TFBS_chinmo
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	5.101e^-4	1	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	5.101e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10256346	2R_10256346_SNP [dm3] 2R_14368841_SNP [dm6]	C	T	5.123e^-4	1	UPSTREAM CG34444 DOWNSTREAM CG34442 INTRON CG34443
2L	10089317	2L_10089317_SNP [dm3] 2L_10089317_SNP [dm6]	C	T	5.125e^-4	1	INTRON CG44153
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	5.127e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	8527107	3R_8527107_SNP [dm3] 3R_12701385_SNP [dm6]	T	C	5.132e^-4	1	INTRON Past1
3L	15277392	3L_15277392_SNP [dm3] 3L_15284292_SNP [dm6]	T	C	5.143e^-4	1	INTERGENIC
X	16756897	X_16756897_SNP [dm3] X_16862864_SNP [dm6]	A	G	5.152e^-4	1	INTRON CG13003
3R	16407317	3R_16407317_SNP [dm3] 3R_20581595_SNP [dm6]	C	T	5.158e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2R	11930628	2R_11930628_SNP [dm3] 2R_16043123_SNP [dm6]	A	C	5.165e^-4	1	SYNONYMOUS_CODING SP2353
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	5.176e^-4	1	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	5.187e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17961891	2R_17961891_SNP [dm3] 2R_22074386_SNP [dm6]	A	C	5.187e^-4	1	NON_SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	19250602	3L_19250602_SNP [dm3] 3L_19257502_SNP [dm6]	G	T	5.197e^-4	1	UTR_3_PRIME nes DOWNSTREAM nes & 1 other
3L	4131450	3L_4131450_SNP [dm3] 3L_4131450_SNP [dm6]	G	T	5.197e^-4	1	INTRON ens
2R	17682858	2R_17682858_SNP [dm3] 2R_21795353_SNP [dm6]	G	T	5.197e^-4	1	INTERGENIC
2R	10176346	2R_10176346_SNP [dm3] 2R_14288841_SNP [dm6]	T	C	5.198e^-4	1	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_inv
2R	3288046	2R_3288046_SNP [dm3] 2R_7400541_SNP [dm6]	C	T	5.201e^-4	1	UPSTREAM CG11112 INTRON Eaf
3L	16964282	3L_16964282_SNP [dm3] 3L_16971182_SNP [dm6]	A	C	5.206e^-4	1	INTRON Exn
X	8060023	X_8060023_INS [dm3] X_8165990_INS [dm6]	C	CC	5.213e^-4	1	UTR_3_PRIME CG2278 UPSTREAM Or7a DOWNSTREAM CG2278
3R	11574925	3R_11574925_SNP [dm3] 3R_15749203_SNP [dm6]	C	T	5.220e^-4	1	INTERGENIC
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	5.221e^-4	1	INTERGENIC
X	4128751	X_4128751_SNP [dm3] X_4234718_SNP [dm6]	C	A	5.223e^-4	1	INTERGENIC
X	15182845	X_15182845_SNP [dm3] X_15288812_SNP [dm6]	T	C	5.229e^-4	1	UPSTREAM CR44663 INTERGENIC
3L	5722080	3L_5722080_SNP [dm3] 3L_5728980_SNP [dm6]	G	C	5.233e^-4	1	INTRON sif
2L	6712017	2L_6712017_SNP [dm3] 2L_6712017_SNP [dm6]	G	A	5.261e^-4	1	UTR_3_PRIME AkhR INTRON AkhR
3R	3318857	3R_3318857_SNP [dm3] 3R_7493135_SNP [dm6]	T	C	5.262e^-4	1	NON_SYNONYMOUS_CODING CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10
2L	18132912	2L_18132912_SNP [dm3] 2L_18132912_SNP [dm6]	C	G	5.269e^-4	1	INTRON kel	TF binding site mE1_TFBS_cad
2R	19199779	2R_19199779_SNP [dm3] 2R_23312256_SNP [dm6]	C	T	5.277e^-4	1	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_inv
X	3928807	X_3928807_SNP [dm3] X_4034774_SNP [dm6]	C	A	5.284e^-4	1	INTERGENIC
X	21122546	X_21122546_SNP [dm3] X_21251519_SNP [dm6]	T	A	5.293e^-4	1	UPSTREAM CG1722 INTRON CG32521
3R	26568704	3R_26568704_SNP [dm3] 3R_30742982_SNP [dm6]	G	T	5.298e^-4	1	SYNONYMOUS_CODING CG15543
2L	3291290	2L_3291290_DEL [dm3] 2L_3291290_DEL [dm6]	TCTCCCTTACATTTGTTAAG...	T	5.300e^-4	1	UTR_3_PRIME CG9664	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	5.322e^-4	1	INTERGENIC
2L	11093702	2L_11093702_SNP [dm3] 2L_11093702_SNP [dm6]	C	A	5.327e^-4	1	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA
2L	18169117	2L_18169117_SNP [dm3] 2L_18169117_SNP [dm6]	A	T	5.338e^-4	1	INTRON CG42750	TF binding site mE1_TFBS_inv
2L	13087523	2L_13087523_SNP [dm3] 2L_13087523_SNP [dm6]	G	A	5.347e^-4	1	INTERGENIC
2L	8670150	2L_8670150_SNP [dm3] 2L_8670150_SNP [dm6]	G	A	5.374e^-4	1	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
3R	26020341	3R_26020341_SNP [dm3] 3R_30194619_SNP [dm6]	C	G	5.380e^-4	1	DOWNSTREAM CG15531 INTERGENIC
X	17025221	X_17025221_SNP [dm3] X_17131188_SNP [dm6]	A	T	5.380e^-4	1	INTRON CG5004
2L	6501892	2L_6501892_SNP [dm3] 2L_6501892_SNP [dm6]	C	T	5.390e^-4	1	INTRON CG31637
X	4223747	X_4223747_INS [dm3] X_4329714_INS [dm6]	C	CC	5.400e^-4	1	UPSTREAM CG12693 INTRON norpA
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	5.406e^-4	1	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16559438	X_16559438_SNP [dm3] X_16665405_SNP [dm6]	C	G	5.442e^-4	1	UPSTREAM CG15865 INTRON r
3L	11854273	3L_11854273_SNP [dm3] 3L_11861173_SNP [dm6]	C	T	5.445e^-4	1	INTRON CG44837
3L	12750567	3L_12750567_SNP [dm3] 3L_12757467_SNP [dm6]	T	A	5.447e^-4	1	INTRON CG32113
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	5.451e^-4	1	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	7858681	3L_7858681_SNP [dm3] 3L_7865581_SNP [dm6]	T	C	5.453e^-4	1	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3L	11523709	3L_11523709_SNP [dm3] 3L_11530609_SNP [dm6]	C	A	5.454e^-4	1	INTRON Mob2
2R	4395559	2R_4395559_SNP [dm3] 2R_8508054_SNP [dm6]	C	A	5.456e^-4	1	INTRON mtt
3L	11697347	3L_11697347_SNP [dm3] 3L_11704247_SNP [dm6]	T	G	5.457e^-4	1	INTRON CG11658
3L	12028228	3L_12028228_SNP [dm3] 3L_12035128_SNP [dm6]	A	G	5.459e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
3R	14730169	3R_14730169_SNP [dm3] 3R_18904447_SNP [dm6]	G	A	5.468e^-4	1	DOWNSTREAM CG14292 INTERGENIC
X	10873423	X_10873423_SNP [dm3] X_10979390_SNP [dm6]	T	C	5.473e^-4	1	INTRON CG42339
2L	5885556	2L_5885556_SNP [dm3] 2L_5885556_SNP [dm6]	T	C	5.478e^-4	1	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
X	10014177	X_10014177_SNP [dm3] X_10120144_SNP [dm6]	G	T	5.488e^-4	1	INTRON RhoU & 1 other
3L	12072545	3L_12072545_SNP [dm3] 3L_12079445_SNP [dm6]	G	A	5.504e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	5.506e^-4	1	INTRON haf & 1 other
2R	1506136	2R_1506136_SNP [dm3] 2R_5618631_SNP [dm6]	C	A	5.510e^-4	1	INTERGENIC	transposable element FlyBase
2L	1995068	2L_1995068_SNP [dm3] 2L_1995068_SNP [dm6]	C	T	5.513e^-4	1	INTERGENIC
X	16759890	X_16759890_SNP [dm3] X_16865857_SNP [dm6]	G	A	5.513e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	18136475	2L_18136475_SNP [dm3] 2L_18136475_SNP [dm6]	G	A	5.520e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
2L	12477370	2L_12477370_SNP [dm3] 2L_12477370_SNP [dm6]	A	C	5.546e^-4	1	INTRON bun
3L	7566290	3L_7566290_SNP [dm3] 3L_7573190_SNP [dm6]	A	C	5.548e^-4	1	INTERGENIC
3R	20378743	3R_20378743_SNP [dm3] 3R_24553021_SNP [dm6]	C	A	5.576e^-4	1	INTRON Esyt2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10304650	3R_10304650_SNP [dm3] 3R_14478928_SNP [dm6]	G	A	5.578e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7633499	2L_7633499_SNP [dm3] 2L_7633499_SNP [dm6]	T	A	5.580e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8199158	2R_8199158_SNP [dm3] 2R_12311653_SNP [dm6]	T	G	5.584e^-4	1	INTRON CG30203
2L	5138295	2L_5138295_SNP [dm3] 2L_5138295_SNP [dm6]	C	T	5.585e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	2893995	3L_2893995_SNP [dm3] 3L_2893995_SNP [dm6]	T	G	5.586e^-4	1	INTERGENIC
3R	6530439	3R_6530439_SNP [dm3] 3R_10704717_SNP [dm6]	A	T	5.590e^-4	1	SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	5.592e^-4	1	INTRON CG13917
3L	2401354	3L_2401354_SNP [dm3] 3L_2401354_SNP [dm6]	G	C	5.606e^-4	1	INTRON CG45186
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	5.611e^-4	1	INTERGENIC
3L	7891365	3L_7891365_DEL [dm3] 3L_7898265_DEL [dm6]	TGAAAATA	T	5.613e^-4	1	INTRON pbl
2R	14704160	2R_14704160_SNP [dm3] 2R_18816655_SNP [dm6]	C	T	5.613e^-4	1	UPSTREAM CG15096 INTERGENIC
X	5704799	X_5704799_SNP [dm3] X_5810766_SNP [dm6]	G	A	5.622e^-4	1	DOWNSTREAM Prosbeta2R1 EXON CR45529
2L	8706913	2L_8706913_SNP [dm3] 2L_8706913_SNP [dm6]	A	C	5.626e^-4	1	SYNONYMOUS_CODING CG9314 INTRON Hnf4
X	4190963	X_4190963_INS [dm3] X_4296930_INS [dm6]	C	ATTTCCTAGGCTTTAAAATA...	5.631e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18497578	3R_18497578_SNP [dm3] 3R_22671856_SNP [dm6]	T	A	5.634e^-4	1	INTRON CG45058
2R	14675993	2R_14675993_SNP [dm3] 2R_18788488_SNP [dm6]	C	T	5.635e^-4	1	INTRON CG15080
X	7939782	X_7939782_SNP [dm3] X_8045749_SNP [dm6]	C	T	5.641e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17096895	2R_17096895_SNP [dm3] 2R_21209390_SNP [dm6]	T	C	5.650e^-4	1	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
3R	22236063	3R_22236063_SNP [dm3] 3R_26410341_SNP [dm6]	T	G	5.650e^-4	1	INTERGENIC
3L	19012325	3L_19012325_SNP [dm3] 3L_19019225_SNP [dm6]	T	C	5.653e^-4	1	INTRON nkd
2L	1598587	2L_1598587_SNP [dm3] 2L_1598587_SNP [dm6]	T	G	5.663e^-4	1	INTRON haf & 1 other
2L	5556071	2L_5556071_SNP [dm3] 2L_5556071_SNP [dm6]	G	A	5.666e^-4	1	DOWNSTREAM CG14017 INTRON GluRIIA
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	5.687e^-4	1	INTRON beat-Ib
3R	3290464	3R_3290464_DEL [dm3] 3R_7464742_DEL [dm6]	CTTAACTGCCTTTGTTGTCA...	C	5.688e^-4	1	INTERGENIC
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	5.692e^-4	1	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13275214	2L_13275214_INS [dm3] 2L_13275214_INS [dm6]	T	TT	5.733e^-4	1	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
3L	17461019	3L_17461019_SNP [dm3] 3L_17467919_SNP [dm6]	G	A	5.733e^-4	1	INTERGENIC
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	5.737e^-4	1	INTRON kirre
3L	7485283	3L_7485283_SNP [dm3] 3L_7492183_SNP [dm6]	C	T	5.745e^-4	1	SYNONYMOUS_CODING Cyp316a1
3R	21899495	3R_21899495_SNP [dm3] 3R_26073773_SNP [dm6]	C	T	5.748e^-4	1	INTERGENIC
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	5.751e^-4	1	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2L	10004418	2L_10004418_SNP [dm3] 2L_10004418_SNP [dm6]	C	A	5.758e^-4	1	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8669539	2L_8669539_INS [dm3] 2L_8669539_INS [dm6]	T	TT	5.762e^-4	1	UTR_3_PRIME Sema-1a
3R	3900934	3R_3900934_SNP [dm3] 3R_8075212_SNP [dm6]	C	T	5.769e^-4	1	UPSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3R	3188159	3R_3188159_INS [dm3] 3R_7362437_INS [dm6]	G	GTTCATACATAAATG...	5.772e^-4	1	UPSTREAM CG17944 DOWNSTREAM Mst84Dd INTERGENIC
2R	15899920	2R_15899920_SNP [dm3] 2R_20012415_SNP [dm6]	T	C	5.775e^-4	1	INTERGENIC
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	5.791e^-4	1	UTR_3_PRIME CG30289 UPSTREAM CG30288
2R	7796195	2R_7796195_SNP [dm3] 2R_11908690_SNP [dm6]	T	G	5.793e^-4	1	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7891205	3L_7891205_SNP [dm3] 3L_7898105_SNP [dm6]	T	C	5.793e^-4	1	SYNONYMOUS_CODING pbl
2L	6458684	2L_6458684_SNP [dm3] 2L_6458684_SNP [dm6]	T	A	5.801e^-4	1	UTR_3_PRIME frj DOWNSTREAM CG16947
3L	16874376	3L_16874376_SNP [dm3] 3L_16881276_SNP [dm6]	T	C	5.802e^-4	1	INTRON Lmpt
2L	18121404	2L_18121404_SNP [dm3] 2L_18121404_SNP [dm6]	C	G	5.810e^-4	1	INTRON CG5758
2L	7398924	2L_7398924_SNP [dm3] 2L_7398924_SNP [dm6]	G	C	5.816e^-4	1	UPSTREAM CR44079 & 1 other INTERGENIC
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	5.823e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4605191	X_4605191_SNP [dm3] X_4711158_SNP [dm6]	T	A	5.827e^-4	1	INTRON Proc-R
2L	19363048	2L_19363048_SNP [dm3] 2L_19363048_SNP [dm6]	A	T	5.833e^-4	1	UTR_5_PRIME dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	3848935	X_3848935_SNP [dm3] X_3954902_SNP [dm6]	C	G	5.838e^-4	1	UTR_3_PRIME Vap-33A DOWNSTREAM Vap-33A & 1 other
X	16759152	X_16759152_SNP [dm3] X_16865119_SNP [dm6]	C	G	5.840e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	5.858e^-4	1	INTRON ppk9
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	5.867e^-4	1	INTRON dpr3
2R	17042880	2R_17042880_SNP [dm3] 2R_21155375_SNP [dm6]	T	C	5.872e^-4	1	INTRON CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1068615	3L_1068615_SNP [dm3] 3L_1068615_SNP [dm6]	A	C	5.873e^-4	1	INTRON bab1
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	5.896e^-4	1	INTRON Eip63E
3L	7866646	3L_7866646_SNP [dm3] 3L_7873546_SNP [dm6]	C	T	5.899e^-4	1	INTRON CG32365
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	5.904e^-4	1	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14783283	2R_14783283_SNP [dm3] 2R_18895778_SNP [dm6]	T	C	5.905e^-4	1	INTRON sano
2L	12167535	2L_12167535_SNP [dm3] 2L_12167535_SNP [dm6]	A	C	5.910e^-4	1	DOWNSTREAM ZnT33D INTRON CG31760
2R	16985991	2R_16985991_SNP [dm3] 2R_21098486_SNP [dm6]	T	C	5.911e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	5.912e^-4	1	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
2L	1598601	2L_1598601_SNP [dm3] 2L_1598601_SNP [dm6]	A	G	5.924e^-4	1	INTRON haf & 1 other
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	5.933e^-4	1	DOWNSTREAM CG17199 INTRON Nlg4
2L	4595457	2L_4595457_SNP [dm3] 2L_4595457_SNP [dm6]	T	C	5.940e^-4	1	UPSTREAM dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	5.941e^-4	1	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	5.942e^-4	1	INTRON unc-13-4A
2L	5137894	2L_5137894_SNP [dm3] 2L_5137894_SNP [dm6]	T	C	5.957e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	9563147	2L_9563147_SNP [dm3] 2L_9563147_SNP [dm6]	C	G	5.960e^-4	1	INTRON jp
3R	19825111	3R_19825111_SNP [dm3] 3R_23999389_SNP [dm6]	G	T	5.968e^-4	1	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10171947	X_10171947_SNP [dm3] X_10277914_SNP [dm6]	G	T	5.971e^-4	1	NON_SYNONYMOUS_CODING alpha-Man-I
2L	1298139	2L_1298139_SNP [dm3] 2L_1298139_SNP [dm6]	C	T	5.974e^-4	1	INTERGENIC
2L	4891660	2L_4891660_SNP [dm3] 2L_4891660_SNP [dm6]	G	T	5.984e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18756309	3L_18756309_SNP [dm3] 3L_18763209_SNP [dm6]	T	A	5.989e^-4	1	INTRON ftz-f1
2L	5569697	2L_5569697_SNP [dm3] 2L_5569697_SNP [dm6]	G	A	5.990e^-4	1	INTERGENIC
2L	2899377	2L_2899377_SNP [dm3] 2L_2899377_SNP [dm6]	C	A	6.002e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	21884905	3R_21884905_SNP [dm3] 3R_26059183_SNP [dm6]	T	C	6.004e^-4	1	UPSTREAM CG14550 & 2 others INTRON RpL34a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3L	18590288	3L_18590288_SNP [dm3] 3L_18597188_SNP [dm6]	G	A	6.009e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
3L	18590683	3L_18590683_SNP [dm3] 3L_18597583_SNP [dm6]	A	G	6.018e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2L	2160267	2L_2160267_SNP [dm3] 2L_2160267_SNP [dm6]	A	G	6.019e^-4	1	SYNONYMOUS_CODING aop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	22053198	X_22053198_DEL [dm3] X_22651362_DEL [dm6]	ACATAAATGAAATGAAA...	GT	6.020e^-4	1	INTERGENIC
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	6.024e^-4	1	SYNONYMOUS_CODING CG31321
3R	24708894	3R_24708894_SNP [dm3] 3R_28883172_SNP [dm6]	A	T	6.025e^-4	1	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	26090218	3R_26090218_SNP [dm3] 3R_30264496_SNP [dm6]	G	T	6.028e^-4	1	INTERGENIC
3L	13486706	3L_13486706_SNP [dm3] 3L_13493606_SNP [dm6]	A	G	6.031e^-4	1	INTRON Tgi
3L	2904547	3L_2904547_SNP [dm3] 3L_2904547_SNP [dm6]	T	C	6.032e^-4	1	INTRON Shab
2R	11437670	2R_11437670_SNP [dm3] 2R_15550165_SNP [dm6]	C	T	6.037e^-4	1	UPSTREAM CG8192 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10814069	2R_10814069_SNP [dm3] 2R_14926564_SNP [dm6]	T	C	6.039e^-4	1	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	6304328	2L_6304328_SNP [dm3] 2L_6304328_SNP [dm6]	A	G	6.039e^-4	1	INTRON Ddr
3R	22236058	3R_22236058_SNP [dm3] 3R_26410336_SNP [dm6]	G	A	6.043e^-4	1	INTERGENIC
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	6.045e^-4	1	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18159156	2L_18159156_INS [dm3] 2L_18159156_INS [dm6]	A	ACTTAAGTATTTTACTATTC...	6.051e^-4	1	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
X	22019690	X_22019690_INS [dm3] X_22617854_INS [dm6]	T	TAGA	6.063e^-4	1	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6078471	X_6078471_SNP [dm3] X_6184438_SNP [dm6]	G	A	6.063e^-4	1	INTRON Ca-alpha1T
2R	16782558	2R_16782558_SNP [dm3] 2R_20895053_SNP [dm6]	G	A	6.073e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_da
2L	10251725	2L_10251725_SNP [dm3] 2L_10251725_SNP [dm6]	G	A	6.074e^-4	1	UPSTREAM Ror DOWNSTREAM CG31717 INTERGENIC
3L	13415946	3L_13415946_SNP [dm3] 3L_13422846_SNP [dm6]	G	C	6.074e^-4	1	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
X	19463999	X_19463999_SNP [dm3] X_19569966_SNP [dm6]	T	C	6.075e^-4	1	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3L	15082122	3L_15082122_SNP [dm3] 3L_15089022_SNP [dm6]	A	T	6.075e^-4	1	UPSTREAM cp309 INTRON cp309
3L	3037761	3L_3037761_SNP [dm3] 3L_3037761_SNP [dm6]	C	T	6.080e^-4	1	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3057004	2L_3057004_SNP [dm3] 2L_3057004_SNP [dm6]	G	A	6.080e^-4	1	UTR_5_PRIME CG3523 DOWNSTREAM v_2_k05816 INTRON CG3523	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	3039481	3R_3039481_SNP [dm3] 3R_7213759_SNP [dm6]	G	A	6.084e^-4	1	DOWNSTREAM CG14606 INTERGENIC
2L	3048640	2L_3048640_SNP [dm3] 2L_3048640_SNP [dm6]	G	A	6.091e^-4	1	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18497565	3R_18497565_SNP [dm3] 3R_22671843_SNP [dm6]	C	T	6.092e^-4	1	INTRON CG45058
3L	16332043	3L_16332043_SNP [dm3] 3L_16338943_SNP [dm6]	T	A	6.105e^-4	1	UPSTREAM CG4998 INTERGENIC
3L	4539855	3L_4539855_SNP [dm3] 3L_4539855_SNP [dm6]	G	T	6.106e^-4	1	NON_SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
2L	15623420	2L_15623420_SNP [dm3] 2L_15623420_SNP [dm6]	G	C	6.111e^-4	1	NON_SYNONYMOUS_CODING Or35a
3R	22807296	3R_22807296_SNP [dm3] 3R_26981574_SNP [dm6]	A	T	6.115e^-4	1	UTR_5_PRIME CG14253 INTRON CG14253
2R	10534166	2R_10534166_SNP [dm3] 2R_14646661_SNP [dm6]	C	A	6.117e^-4	1	DOWNSTREAM CG10139 INTERGENIC
3R	7087172	3R_7087172_SNP [dm3] 3R_11261450_SNP [dm6]	T	A	6.134e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6971023	3R_6971023_SNP [dm3] 3R_11145301_SNP [dm6]	A	G	6.150e^-4	1	UPSTREAM CheA86a INTERGENIC
X	19511963	X_19511963_SNP [dm3] X_19617930_SNP [dm6]	C	T	6.151e^-4	1	UTR_5_PRIME CG12788 UTR_3_PRIME Tim9b DOWNSTREAM CG14221	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2156323	3L_2156323_SNP [dm3] 3L_2156323_SNP [dm6]	T	C	6.186e^-4	1	INTRON CG15822
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	6.193e^-4	1	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
X	4483689	X_4483689_SNP [dm3] X_4589656_SNP [dm6]	A	C	6.193e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9676028	3L_9676028_SNP [dm3] 3L_9682928_SNP [dm6]	C	G	6.211e^-4	1	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16961315	3L_16961315_SNP [dm3] 3L_16968215_SNP [dm6]	C	G	6.212e^-4	1	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
X	4198480	X_4198480_SNP [dm3] X_4304447_SNP [dm6]	A	G	6.212e^-4	1	INTERGENIC
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	6.218e^-4	1	INTERGENIC

By genomic position
Variant impact
Gene name

Total_Leg_Length_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results