DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.808e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.0940

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1827 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	4.385e^-7	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	6.569e^-7	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	6.672e^-7	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	8.932e^-7	0.384	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	1.023e^-6	0.384	INTRON nemy
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	1.253e^-6	0.391	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18941475	3L_18941475_SNP [dm3] 3L_18948375_SNP [dm6]	C	A	2.625e^-6	0.703	INTERGENIC
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	3.009e^-6	0.705	INTRON Rbp6
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	4.408e^-6	0.808	INTRON spir
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	4.630e^-6	0.808	INTRON spg
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	4.741e^-6	0.808	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	19910552	2L_19910552_SNP [dm3] 2L_19910552_SNP [dm6]	T	A	5.325e^-6	0.832	DOWNSTREAM CR43097 INTRON sick
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	7.207e^-6	0.959	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	7.434e^-6	0.959	INTRON spg
3L	10265934	3L_10265934_SNP [dm3] 3L_10272834_SNP [dm6]	G	T	8.963e^-6	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	3120955	3L_3120955_SNP [dm3] 3L_3120955_SNP [dm6]	C	G	9.890e^-6	0.959	NON_SYNONYMOUS_CODING prominin-like DOWNSTREAM tRNA:CR32273
2R	14320989	2R_14320989_SNP [dm3] 2R_18433484_SNP [dm6]	G	A	1.115e^-5	0.959	INTRON CG30118
2R	14320988	2R_14320988_SNP [dm3] 2R_18433483_SNP [dm6]	G	A	1.121e^-5	0.959	INTRON CG30118
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	1.162e^-5	0.959	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	1.251e^-5	0.959	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3L	17174848	3L_17174848_SNP [dm3] 3L_17181748_SNP [dm6]	C	T	1.303e^-5	0.959	INTRON Rbp6
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	1.322e^-5	0.959	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	1.322e^-5	0.959	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	1.366e^-5	0.959	INTRON fzy	TF binding site mE1_TFBS_sens
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.411e^-5	0.959	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	10391180	2L_10391180_SNP [dm3] 2L_10391180_SNP [dm6]	C	T	1.428e^-5	0.959	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	1.451e^-5	0.959	INTRON sm
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	1.641e^-5	0.959	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3L	18941474	3L_18941474_SNP [dm3] 3L_18948374_SNP [dm6]	G	C	1.655e^-5	0.959	INTERGENIC
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	1.677e^-5	0.959	INTRON spir & 1 other
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	1.712e^-5	0.959	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	1.717e^-5	0.959	INTERGENIC
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	1.798e^-5	0.959	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	1.812e^-5	0.959	INTRON caps
2R	11469133	2R_11469133_SNP [dm3] 2R_15581628_SNP [dm6]	G	C	1.867e^-5	0.959	INTERGENIC
2L	20267118	2L_20267118_SNP [dm3] 2L_20267118_SNP [dm6]	C	T	1.925e^-5	0.959	INTERGENIC
X	21895236	X_21895236_SNP [dm3] X_22493400_SNP [dm6]	T	A	1.933e^-5	0.959	INTRON l_1_G0196
2R	17141082	2R_17141082_SNP [dm3] 2R_21253577_SNP [dm6]	G	A	2.058e^-5	0.959	INTERGENIC
2L	20418313	2L_20418313_INS [dm3] 2L_20418313_INS [dm6]	G	GCCTTAATT	2.097e^-5	0.959	UPSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7402091	2R_7402091_SNP [dm3] 2R_11514586_SNP [dm6]	C	T	2.205e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2R	12950247	2R_12950247_SNP [dm3] 2R_17062742_SNP [dm6]	C	A	2.214e^-5	0.959	UPSTREAM CG6967 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	2.246e^-5	0.959	INTRON sm
2L	16311859	2L_16311859_DEL [dm3] 2L_16311859_DEL [dm6]	TT	T	2.356e^-5	0.959	INTRON fzy	TF binding site mE1_TFBS_sens
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	2.363e^-5	0.959	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	2.367e^-5	0.959	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	2.456e^-5	0.959	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26318092	3R_26318092_SNP [dm3] 3R_30492370_SNP [dm6]	A	T	2.491e^-5	0.959	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	21106881	2L_21106881_SNP [dm3] 2L_21106881_SNP [dm6]	T	G	2.669e^-5	0.959	UPSTREAM Nhe2 INTRON Nhe2 EXON CR44056	TF binding site BDTNP1_TFBS_dl
3L	10266111	3L_10266111_SNP [dm3] 3L_10273011_SNP [dm6]	T	A	2.942e^-5	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	10559409	X_10559409_SNP [dm3] X_10665376_SNP [dm6]	A	C	3.052e^-5	0.959	INTRON X11Lbeta
2L	2675276	2L_2675276_SNP [dm3] 2L_2675276_SNP [dm6]	A	G	3.061e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2L	9858559	2L_9858559_SNP [dm3] 2L_9858559_SNP [dm6]	G	T	3.064e^-5	0.959	INTRON nAChRalpha6
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	3.240e^-5	0.959	INTERGENIC
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	3.280e^-5	0.959	UTR_3_PRIME hec DOWNSTREAM fne
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	3.341e^-5	0.959	UTR_3_PRIME hec DOWNSTREAM fne
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	3.406e^-5	0.959	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20267013	2L_20267013_SNP [dm3] 2L_20267013_SNP [dm6]	G	A	3.589e^-5	0.959	INTERGENIC
X	8068453	X_8068453_DEL [dm3] X_8174420_DEL [dm6]	TAGAGTAAAGTAATGTAGAA...	T	3.640e^-5	0.959	INTRON slpr
2R	15444018	2R_15444018_SNP [dm3] 2R_19556513_SNP [dm6]	G	A	3.706e^-5	0.959	INTRON sm
3L	9336948	3L_9336948_SNP [dm3] 3L_9343848_SNP [dm6]	C	T	3.770e^-5	0.959	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	3.784e^-5	0.959	INTERGENIC
2L	19879715	2L_19879715_SNP [dm3] 2L_19879715_SNP [dm6]	A	G	3.787e^-5	0.959	INTRON sick
3L	9336680	3L_9336680_SNP [dm3] 3L_9343580_SNP [dm6]	G	T	3.821e^-5	0.959	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	15444103	2R_15444103_INS [dm3] 2R_19556598_INS [dm6]	C	CCT	3.841e^-5	0.959	INTRON sm
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	3.859e^-5	0.959	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	8346053	2L_8346053_SNP [dm3] 2L_8346053_SNP [dm6]	C	T	3.945e^-5	0.959	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	4.004e^-5	0.959	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13745476	2R_13745476_SNP [dm3] 2R_17857971_SNP [dm6]	A	T	4.167e^-5	0.959	INTRON olf186-F
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	4.239e^-5	0.959	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	4.402e^-5	0.959	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3L	23075298	3L_23075298_DEL [dm3] 3L_23082198_DEL [dm6]	TTTTA	T	4.402e^-5	0.959	INTERGENIC
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	4.496e^-5	0.959	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	4.508e^-5	0.959	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	4.642e^-5	0.959	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	4.696e^-5	0.959	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14336596	3L_14336596_SNP [dm3] 3L_14343496_SNP [dm6]	T	C	4.906e^-5	0.959	INTRON fz
X	19722043	X_19722043_SNP [dm3] X_19828010_SNP [dm6]	C	G	4.984e^-5	0.959	INTERGENIC
3L	12060803	3L_12060803_SNP [dm3] 3L_12067703_SNP [dm6]	A	T	5.142e^-5	0.959	UTR_3_PRIME Sema-5c
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	5.219e^-5	0.959	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
X	4839904	X_4839904_INS [dm3] X_4945871_INS [dm6]	T	TTTTT	5.249e^-5	0.959	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	894572	3L_894572_SNP [dm3] 3L_894572_SNP [dm6]	T	G	5.321e^-5	0.959	UTR_3_PRIME CG32479
2L	2439088	2L_2439088_SNP [dm3] 2L_2439088_SNP [dm6]	A	C	5.396e^-5	0.959	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	19907126	2L_19907126_SNP [dm3] 2L_19907126_SNP [dm6]	C	T	5.449e^-5	0.959	INTRON sick
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	5.707e^-5	0.959	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2R	13221645	2R_13221645_SNP [dm3] 2R_17334140_SNP [dm6]	A	C	5.735e^-5	0.959	INTRON mbl
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	5.741e^-5	0.959	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	12090681	2R_12090681_SNP [dm3] 2R_16203176_SNP [dm6]	C	T	5.817e^-5	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
X	14242459	X_14242459_SNP [dm3] X_14348426_SNP [dm6]	A	T	5.840e^-5	0.959	INTRON dpr8
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	5.848e^-5	0.959	DOWNSTREAM CG13500 INTERGENIC
2L	4629811	2L_4629811_SNP [dm3] 2L_4629811_SNP [dm6]	T	C	5.871e^-5	0.959	INTERGENIC
3R	15815305	3R_15815305_SNP [dm3] 3R_19989583_SNP [dm6]	A	C	5.923e^-5	0.959	INTRON Hs6st
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	5.938e^-5	0.959	INTRON beat-IV
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	5.949e^-5	0.959	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17242032	3R_17242032_SNP [dm3] 3R_21416310_SNP [dm6]	C	T	5.975e^-5	0.959	INTRON lbl
3R	3505945	3R_3505945_SNP [dm3] 3R_7680223_SNP [dm6]	C	T	6.020e^-5	0.959	INTRON Nlg1
3L	9336802	3L_9336802_SNP [dm3] 3L_9343702_SNP [dm6]	A	T	6.059e^-5	0.959	UPSTREAM PGRP-LC INTRON PGRP-LC
2L	20285277	2L_20285277_SNP [dm3] 2L_20285277_SNP [dm6]	C	T	6.071e^-5	0.959	INTERGENIC
2R	11072270	2R_11072270_INS [dm3] 2R_15184765_INS [dm6]	G	GCAGACAGATG...	6.103e^-5	0.959	UPSTREAM CG43068 INTRON igl
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	6.127e^-5	0.959	UPSTREAM Cpr62Bc INTERGENIC
2L	1141786	2L_1141786_INS [dm3] 2L_1141786_INS [dm6]	G	GCTG	6.131e^-5	0.959	DOWNSTREAM CG4577 INTERGENIC
3L	10266257	3L_10266257_SNP [dm3] 3L_10273157_SNP [dm6]	T	C	6.144e^-5	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	2589342	2L_2589342_SNP [dm3] 2L_2589342_SNP [dm6]	C	T	6.148e^-5	0.959	INTERGENIC
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	6.177e^-5	0.959	INTERGENIC
X	19184397	X_19184397_SNP [dm3] X_19290364_SNP [dm6]	A	T	6.206e^-5	0.959	INTRON CG8034
3R	7168713	3R_7168713_SNP [dm3] 3R_11342991_SNP [dm6]	C	A	6.595e^-5	0.959	INTRON pros
3L	10266258	3L_10266258_SNP [dm3] 3L_10273158_SNP [dm6]	G	A	6.601e^-5	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	9014482	2L_9014482_SNP [dm3] 2L_9014482_SNP [dm6]	T	C	6.657e^-5	0.959	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
X	8647226	X_8647226_SNP [dm3] X_8753193_SNP [dm6]	C	A	6.730e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21456191	X_21456191_SNP [dm3] X_21585164_SNP [dm6]	A	T	6.734e^-5	0.959	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2L	2439113	2L_2439113_SNP [dm3] 2L_2439113_SNP [dm6]	G	A	6.797e^-5	0.959	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	1254840	3L_1254840_SNP [dm3] 3L_1254840_SNP [dm6]	C	A	6.838e^-5	0.959	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	7.124e^-5	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8429166	3R_8429166_SNP [dm3] 3R_12603444_SNP [dm6]	G	T	7.153e^-5	0.959	INTERGENIC
3L	7419459	3L_7419459_SNP [dm3] 3L_7426359_SNP [dm6]	A	T	7.180e^-5	0.959	INTRON CG42458
2R	13221603	2R_13221603_SNP [dm3] 2R_17334098_SNP [dm6]	G	A	7.244e^-5	0.959	INTRON mbl
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	7.244e^-5	0.959	INTRON mbl
2L	7447884	2L_7447884_SNP [dm3] 2L_7447884_SNP [dm6]	A	T	7.426e^-5	0.959	UTR_5_PRIME santa-maria INTRON santa-maria
2R	4300983	2R_4300983_SNP [dm3] 2R_8413478_SNP [dm6]	C	T	7.438e^-5	0.959	INTERGENIC
2R	8551438	2R_8551438_SNP [dm3] 2R_12663933_SNP [dm6]	T	A	7.448e^-5	0.959	INTRON nemy
3L	23075306	3L_23075306_DEL [dm3] 3L_23082206_DEL [dm6]	CCATGCTGACCCGAGAACTT...	C	7.469e^-5	0.959	INTERGENIC
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	7.566e^-5	0.959	DOWNSTREAM CG33460 INTRON CG33461
3R	19230778	3R_19230778_SNP [dm3] 3R_23405056_SNP [dm6]	T	C	7.658e^-5	0.959	NON_SYNONYMOUS_CODING Ir94d UPSTREAM Ir94e
2R	13221670	2R_13221670_SNP [dm3] 2R_17334165_SNP [dm6]	T	C	7.658e^-5	0.959	INTRON mbl
2R	15294398	2R_15294398_SNP [dm3] 2R_19406893_SNP [dm6]	C	A	7.673e^-5	0.959	DOWNSTREAM hts INTRON hts
X	14401074	X_14401074_SNP [dm3] X_14507041_SNP [dm6]	G	T	7.729e^-5	0.959	INTERGENIC
2R	8692411	2R_8692411_SNP [dm3] 2R_12804906_SNP [dm6]	G	A	7.746e^-5	0.959	INTERGENIC
3L	17247615	3L_17247615_SNP [dm3] 3L_17254515_SNP [dm6]	A	G	7.750e^-5	0.959	UPSTREAM CG6497 INTRON CR43870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
X	16091210	X_16091210_INS [dm3] X_16197177_INS [dm6]	C	CC	7.765e^-5	0.959	INTERGENIC
X	16091223	X_16091223_SNP [dm3] X_16197190_SNP [dm6]	T	C	7.771e^-5	0.959	INTERGENIC
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	7.818e^-5	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	20285290	2L_20285290_SNP [dm3] 2L_20285290_SNP [dm6]	A	T	7.829e^-5	0.959	INTERGENIC
2R	10536363	2R_10536363_SNP [dm3] 2R_14648858_SNP [dm6]	C	T	7.838e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12845227	X_12845227_SNP [dm3] X_12951194_SNP [dm6]	G	T	7.990e^-5	0.959	UTR_3_PRIME hec DOWNSTREAM fne
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	8.168e^-5	0.959	INTERGENIC
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	8.215e^-5	0.959	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4159196	2R_4159196_SNP [dm3] 2R_8271691_SNP [dm6]	A	C	8.228e^-5	0.959	INTERGENIC
2R	4300956	2R_4300956_SNP [dm3] 2R_8413451_SNP [dm6]	T	C	8.230e^-5	0.959	INTERGENIC
3L	10876055	3L_10876055_SNP [dm3] 3L_10882955_SNP [dm6]	A	T	8.280e^-5	0.959	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	17181040	3L_17181040_SNP [dm3] 3L_17187940_SNP [dm6]	C	A	8.337e^-5	0.959	INTRON Rbp6
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	8.353e^-5	0.959	INTRON kirre
2L	6800398	2L_6800398_SNP [dm3] 2L_6800398_SNP [dm6]	C	T	8.458e^-5	0.959	UTR_3_PRIME CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
2R	11479417	2R_11479417_SNP [dm3] 2R_15591912_SNP [dm6]	A	C	8.470e^-5	0.959	INTERGENIC
2R	4459588	2R_4459588_SNP [dm3] 2R_8572083_SNP [dm6]	A	G	8.491e^-5	0.959	UTR_3_PRIME Cyp6a13
3L	10266234	3L_10266234_SNP [dm3] 3L_10273134_SNP [dm6]	G	A	8.516e^-5	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	7447883	2L_7447883_SNP [dm3] 2L_7447883_SNP [dm6]	T	A	8.518e^-5	0.959	UTR_5_PRIME santa-maria INTRON santa-maria
3L	14336607	3L_14336607_SNP [dm3] 3L_14343507_SNP [dm6]	C	T	8.526e^-5	0.959	INTRON fz
2R	12592988	2R_12592988_SNP [dm3] 2R_16705483_SNP [dm6]	T	A	8.751e^-5	0.959	INTRON CG30463	TF binding site mE1_TFBS_chinmo
3R	26056417	3R_26056417_SNP [dm3] 3R_30230695_SNP [dm6]	C	A	8.897e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	8551442	2R_8551442_SNP [dm3] 2R_12663937_SNP [dm6]	A	G	8.951e^-5	0.959	INTRON nemy
X	21356334	X_21356334_SNP [dm3] X_21485307_SNP [dm6]	T	C	8.968e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3007835	3L_3007835_SNP [dm3] 3L_3007835_SNP [dm6]	C	T	8.980e^-5	0.959	INTRON FMRFaR
2R	9951944	2R_9951944_SNP [dm3] 2R_14064439_SNP [dm6]	A	C	9.040e^-5	0.959	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7952179	3L_7952179_SNP [dm3] 3L_7959079_SNP [dm6]	G	A	9.109e^-5	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9014905	2L_9014905_SNP [dm3] 2L_9014905_SNP [dm6]	G	A	9.141e^-5	0.959	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	9.225e^-5	0.959	INTRON rgn
3R	17353858	3R_17353858_SNP [dm3] 3R_21528136_SNP [dm6]	T	C	9.342e^-5	0.959	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	9.407e^-5	0.959	INTRON Wnt6
2L	6537988	2L_6537988_SNP [dm3] 2L_6537988_SNP [dm6]	G	C	9.409e^-5	0.959	INTRON eya	TF binding site mE1_TFBS_sens
X	5967597	X_5967597_SNP [dm3] X_6073564_SNP [dm6]	C	A	9.480e^-5	0.959	UPSTREAM Tsp5D INTRON Tsp5D
X	20451509	X_20451509_SNP [dm3] X_20580482_SNP [dm6]	T	A	9.513e^-5	0.959	INTERGENIC
X	12916728	X_12916728_SNP [dm3] X_13022695_SNP [dm6]	G	A	9.622e^-5	0.959	SYNONYMOUS_CODING CG2209 INTRON rad
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	9.643e^-5	0.959	INTRON TyrR
X	5967529	X_5967529_SNP [dm3] X_6073496_SNP [dm6]	C	G	9.898e^-5	0.959	UPSTREAM Tsp5D INTRON Tsp5D
X	12141627	X_12141627_SNP [dm3] X_12247594_SNP [dm6]	G	A	9.947e^-5	0.959	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	15639681	3R_15639681_SNP [dm3] 3R_19813959_SNP [dm6]	C	T	1.013e^-4	0.959	INTRON bnl
2R	9746793	2R_9746793_SNP [dm3] 2R_13859288_SNP [dm6]	A	C	1.022e^-4	0.959	SYNONYMOUS_CODING Uba3 UPSTREAM tum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	1.024e^-4	0.959	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3L	12997653	3L_12997653_SNP [dm3] 3L_13004553_SNP [dm6]	G	A	1.026e^-4	0.959	INTERGENIC
2L	8346052	2L_8346052_SNP [dm3] 2L_8346052_SNP [dm6]	C	T	1.040e^-4	0.959	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20407143	X_20407143_SNP [dm3] X_20536116_SNP [dm6]	C	G	1.055e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15101246	2L_15101246_SNP [dm3] 2L_15101246_SNP [dm6]	A	G	1.055e^-4	0.959	INTERGENIC
3R	4395921	3R_4395921_SNP [dm3] 3R_8570199_SNP [dm6]	C	T	1.065e^-4	0.959	DOWNSTREAM Cenp-C INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	1.067e^-4	0.959	UPSTREAM CG15403 INTRON toc
3L	10266528	3L_10266528_SNP [dm3] 3L_10273428_SNP [dm6]	G	A	1.078e^-4	0.959	SYNONYMOUS_CODING Or67d
3L	18628069	3L_18628069_SNP [dm3] 3L_18634969_SNP [dm6]	G	A	1.080e^-4	0.959	INTRON MYPT-75D
2R	8551441	2R_8551441_SNP [dm3] 2R_12663936_SNP [dm6]	G	T	1.082e^-4	0.959	INTRON nemy
3L	10266062	3L_10266062_SNP [dm3] 3L_10272962_SNP [dm6]	A	G	1.086e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	20959777	2L_20959777_SNP [dm3] 2L_20959777_SNP [dm6]	G	T	1.093e^-4	0.959	INTERGENIC
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	1.096e^-4	0.959	INTRON twin
3L	9278667	3L_9278667_SNP [dm3] 3L_9285567_SNP [dm6]	A	G	1.103e^-4	0.959	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	1.106e^-4	0.959	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	1.106e^-4	0.959	INTRON CG9747
2R	9937666	2R_9937666_SNP [dm3] 2R_14050161_SNP [dm6]	C	T	1.128e^-4	0.959	INTRON mam	TF binding site BDTNP1_TFBS_prd
2R	13367791	2R_13367791_SNP [dm3] 2R_17480286_SNP [dm6]	T	A	1.133e^-4	0.959	UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
X	14739367	X_14739367_SNP [dm3] X_14845334_SNP [dm6]	A	G	1.136e^-4	0.959	UPSTREAM CG12539 INTRON Flo2
3R	22517885	3R_22517885_DEL [dm3] 3R_26692163_DEL [dm6]	AGCAGGGCAAGGAAA...	A	1.136e^-4	0.959	DOWNSTREAM TwdlQ INTERGENIC
3L	10266007	3L_10266007_SNP [dm3] 3L_10272907_SNP [dm6]	T	C	1.142e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	19913640	2L_19913640_SNP [dm3] 2L_19913640_SNP [dm6]	T	G	1.148e^-4	0.959	UPSTREAM Victoria INTRON sick
2L	19910559	2L_19910559_SNP [dm3] 2L_19910559_SNP [dm6]	C	A	1.150e^-4	0.959	DOWNSTREAM CR43097 INTRON sick
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	1.154e^-4	0.959	SYNONYMOUS_CODING Or35a
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	1.154e^-4	0.959	INTRON spir & 1 other
X	7612623	X_7612623_SNP [dm3] X_7718590_SNP [dm6]	C	G	1.157e^-4	0.959	UPSTREAM CG15478 INTERGENIC
3L	7391746	3L_7391746_SNP [dm3] 3L_7398646_SNP [dm6]	T	A	1.159e^-4	0.959	NON_SYNONYMOUS_CODING CG8562 DOWNSTREAM CG32379	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16824362	X_16824362_SNP [dm3] X_16930329_SNP [dm6]	C	T	1.165e^-4	0.959	INTRON CG4928
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	1.166e^-4	0.959	DOWNSTREAM CG6481 & 1 other INTRON Bx
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	1.170e^-4	0.959	INTRON Fili
X	16824361	X_16824361_SNP [dm3] X_16930328_SNP [dm6]	A	T	1.173e^-4	0.959	INTRON CG4928
3R	24741429	3R_24741429_SNP [dm3] 3R_28915707_SNP [dm6]	T	C	1.183e^-4	0.959	INTRON Doa
X	5245462	X_5245462_SNP [dm3] X_5351429_SNP [dm6]	T	A	1.187e^-4	0.959	INTRON SK
2L	20144402	2L_20144402_SNP [dm3] 2L_20144402_SNP [dm6]	G	A	1.189e^-4	0.959	INTERGENIC
3R	19230108	3R_19230108_SNP [dm3] 3R_23404386_SNP [dm6]	T	G	1.191e^-4	0.959	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
2R	14214375	2R_14214375_SNP [dm3] 2R_18326870_SNP [dm6]	A	T	1.192e^-4	0.959	INTRON sbb
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	1.193e^-4	0.959	INTERGENIC
2L	19913638	2L_19913638_INS [dm3] 2L_19913638_INS [dm6]	T	TT	1.194e^-4	0.959	UPSTREAM Victoria INTRON sick
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	1.199e^-4	0.959	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	1.200e^-4	0.959	INTERGENIC
2L	15390689	2L_15390689_SNP [dm3] 2L_15390689_SNP [dm6]	G	C	1.203e^-4	0.959	INTERGENIC
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	1.205e^-4	0.959	SYNONYMOUS_CODING Ir94e
2R	12090661	2R_12090661_SNP [dm3] 2R_16203156_SNP [dm6]	T	C	1.205e^-4	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	9705679	2L_9705679_SNP [dm3] 2L_9705679_SNP [dm6]	G	A	1.208e^-4	0.959	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	9922073	2R_9922073_DEL [dm3] 2R_14034568_DEL [dm6]	CGAAGCGAAGGC...	C	1.209e^-4	0.959	INTRON mam
2R	13340615	2R_13340615_SNP [dm3] 2R_17453110_SNP [dm6]	C	T	1.211e^-4	0.959	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	1.212e^-4	0.959	INTERGENIC
2L	3492168	2L_3492168_SNP [dm3] 2L_3492168_SNP [dm6]	T	G	1.217e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	1.223e^-4	0.959	DOWNSTREAM mthl13 INTRON CG33144
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	1.227e^-4	0.959	INTRON spir & 1 other
2L	7174648	2L_7174648_INS [dm3] 2L_7174648_INS [dm6]	C	CGGCATC	1.229e^-4	0.959	EXON CR44610
2R	13354399	2R_13354399_SNP [dm3] 2R_17466894_SNP [dm6]	G	A	1.232e^-4	0.959	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5510722	X_5510722_SNP [dm3] X_5616689_SNP [dm6]	T	G	1.233e^-4	0.959	UTR_3_PRIME RhoGAP5A UPSTREAM CG34434
2L	4629113	2L_4629113_SNP [dm3] 2L_4629113_SNP [dm6]	A	T	1.243e^-4	0.959	INTERGENIC
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	1.245e^-4	0.959	INTRON sick
3L	2916614	3L_2916614_SNP [dm3] 3L_2916614_SNP [dm6]	T	A	1.249e^-4	0.959	UTR_5_PRIME CG9970 INTRON Shab
2L	13473876	2L_13473876_SNP [dm3] 2L_13473876_SNP [dm6]	T	G	1.265e^-4	0.959	START_GAINED CG42784 UTR_5_PRIME CG42784 INTRON CG42784
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.267e^-4	0.959	INTRON beat-Vc
2L	9023539	2L_9023539_SNP [dm3] 2L_9023539_SNP [dm6]	T	C	1.271e^-4	0.959	DOWNSTREAM CG9582 INTERGENIC
2L	10089081	2L_10089081_SNP [dm3] 2L_10089081_SNP [dm6]	T	G	1.275e^-4	0.959	INTRON CG44153
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	1.276e^-4	0.959	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19899342	2L_19899342_SNP [dm3] 2L_19899342_SNP [dm6]	T	C	1.277e^-4	0.959	INTRON sick
2R	10864084	2R_10864084_SNP [dm3] 2R_14976579_SNP [dm6]	A	G	1.289e^-4	0.959	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9018970	2L_9018970_SNP [dm3] 2L_9018970_SNP [dm6]	C	A	1.303e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12058818	3L_12058818_SNP [dm3] 3L_12065718_SNP [dm6]	G	T	1.312e^-4	0.959	UPSTREAM rols INTERGENIC
2L	7278198	2L_7278198_SNP [dm3] 2L_7278198_SNP [dm6]	G	A	1.313e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
X	12400535	X_12400535_SNP [dm3] X_12506502_SNP [dm6]	C	T	1.318e^-4	0.959	INTRON CG2556
2L	6800308	2L_6800308_SNP [dm3] 2L_6800308_SNP [dm6]	G	A	1.327e^-4	0.959	SYNONYMOUS_CODING CG17376 UTR_3_PRIME CG17376 DOWNSTREAM CR43610 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
2L	1707019	2L_1707019_SNP [dm3] 2L_1707019_SNP [dm6]	A	T	1.328e^-4	0.959	DOWNSTREAM CG17660 & 1 other INTERGENIC
3R	19230159	3R_19230159_SNP [dm3] 3R_23404437_SNP [dm6]	T	C	1.331e^-4	0.959	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
3R	22502604	3R_22502604_SNP [dm3] 3R_26676882_SNP [dm6]	A	G	1.336e^-4	0.959	INTRON beat-VII
2L	11556988	2L_11556988_SNP [dm3] 2L_11556988_SNP [dm6]	T	G	1.339e^-4	0.959	INTERGENIC
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	1.343e^-4	0.959	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1487909	2R_1487909_SNP [dm3] 2R_5600404_SNP [dm6]	G	A	1.356e^-4	0.959	INTERGENIC
3R	8494003	3R_8494003_SNP [dm3] 3R_12668281_SNP [dm6]	C	A	1.357e^-4	0.959	INTRON CG14395
2R	14947167	2R_14947167_SNP [dm3] 2R_19059662_SNP [dm6]	T	G	1.359e^-4	0.959	START_GAINED CG15109 UTR_5_PRIME CG15109 INTRON CG15109
3R	23862179	3R_23862179_SNP [dm3] 3R_28036457_SNP [dm6]	A	G	1.369e^-4	0.959	INTRON CG34362
2R	11479209	2R_11479209_SNP [dm3] 2R_15591704_SNP [dm6]	G	A	1.370e^-4	0.959	INTERGENIC
X	17156747	X_17156747_SNP [dm3] X_17262714_SNP [dm6]	A	G	1.377e^-4	0.959	NON_SYNONYMOUS_CODING f UTR_5_PRIME f	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16794833	X_16794833_SNP [dm3] X_16900800_SNP [dm6]	T	G	1.379e^-4	0.959	DOWNSTREAM CR44754 INTERGENIC
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	1.397e^-4	0.959	DOWNSTREAM mthl13 INTRON CG33144
X	5968670	X_5968670_SNP [dm3] X_6074637_SNP [dm6]	G	A	1.414e^-4	0.959	START_GAINED Tsp5D UTR_5_PRIME Tsp5D
2L	6309366	2L_6309366_SNP [dm3] 2L_6309366_SNP [dm6]	G	T	1.420e^-4	0.959	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
2R	19218202	2R_19218202_SNP [dm3] 2R_23330679_SNP [dm6]	T	C	1.435e^-4	0.959	UPSTREAM CG30413 INTERGENIC
2L	1707024	2L_1707024_SNP [dm3] 2L_1707024_SNP [dm6]	A	T	1.439e^-4	0.959	DOWNSTREAM CG17660 & 1 other INTERGENIC
2L	9858403	2L_9858403_SNP [dm3] 2L_9858403_SNP [dm6]	A	C	1.445e^-4	0.959	INTRON nAChRalpha6
2L	19901774	2L_19901774_SNP [dm3] 2L_19901774_SNP [dm6]	A	C	1.449e^-4	0.959	INTRON sick
3L	6651414	3L_6651414_SNP [dm3] 3L_6658314_SNP [dm6]	G	C	1.454e^-4	0.959	INTERGENIC
2L	20126418	2L_20126418_SNP [dm3] 2L_20126418_SNP [dm6]	A	C	1.467e^-4	0.959	INTERGENIC
2R	15196235	2R_15196235_SNP [dm3] 2R_19308730_SNP [dm6]	G	A	1.469e^-4	0.959	NON_SYNONYMOUS_CODING EndoB INTRON EndoB
2R	15294646	2R_15294646_SNP [dm3] 2R_19407141_SNP [dm6]	G	T	1.470e^-4	0.959	NON_SYNONYMOUS_CODING hts INTRON hts
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	1.472e^-4	0.959	INTRON drd
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	1.472e^-4	0.959	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	18690056	3L_18690056_SNP [dm3] 3L_18696956_SNP [dm6]	G	A	1.473e^-4	0.959	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	1.479e^-4	0.959	INTRON bbg
X	14739369	X_14739369_SNP [dm3] X_14845336_SNP [dm6]	A	C	1.482e^-4	0.959	UPSTREAM CG12539 INTRON Flo2
3L	17181043	3L_17181043_SNP [dm3] 3L_17187943_SNP [dm6]	G	C	1.483e^-4	0.959	INTRON Rbp6
3R	26318078	3R_26318078_SNP [dm3] 3R_30492356_SNP [dm6]	G	A	1.487e^-4	0.959	SPLICE_SITE_REGION PH4alphaMP DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3L	16408879	3L_16408879_SNP [dm3] 3L_16415779_SNP [dm6]	C	T	1.489e^-4	0.959	NON_SYNONYMOUS_CODING CG4573 DOWNSTREAM TMS1
3L	14469124	3L_14469124_SNP [dm3] 3L_14476024_SNP [dm6]	A	G	1.492e^-4	0.959	INTRON bbg
2L	12227599	2L_12227599_SNP [dm3] 2L_12227599_SNP [dm6]	A	G	1.493e^-4	0.959	INTRON aret
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	1.521e^-4	0.959	INTERGENIC
2L	2386586	2L_2386586_SNP [dm3] 2L_2386586_SNP [dm6]	C	G	1.521e^-4	0.959	UPSTREAM CG3557 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14480200	3L_14480200_SNP [dm3] 3L_14487100_SNP [dm6]	G	C	1.522e^-4	0.959	INTRON bbg
3R	8441807	3R_8441807_SNP [dm3] 3R_12616085_SNP [dm6]	G	A	1.522e^-4	0.959	INTERGENIC
3L	13708708	3L_13708708_SNP [dm3] 3L_13715608_SNP [dm6]	T	C	1.523e^-4	0.959	INTRON bru-3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14480930	3L_14480930_SNP [dm3] 3L_14487830_SNP [dm6]	A	G	1.532e^-4	0.959	INTRON bbg
X	5967520	X_5967520_SNP [dm3] X_6073487_SNP [dm6]	C	A	1.532e^-4	0.959	UPSTREAM Tsp5D INTRON Tsp5D
2R	19175808	2R_19175808_SNP [dm3] 2R_23288285_SNP [dm6]	T	C	1.533e^-4	0.959	INTERGENIC
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	1.537e^-4	0.959	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2R	9177820	2R_9177820_SNP [dm3] 2R_13290315_SNP [dm6]	A	T	1.539e^-4	0.959	INTRON Dh31-R
2L	9175930	2L_9175930_INS [dm3] 2L_9175930_INS [dm6]	A	ATGTA	1.548e^-4	0.959	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	1.565e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_sens
2R	16436450	2R_16436450_SNP [dm3] 2R_20548945_SNP [dm6]	T	C	1.565e^-4	0.959	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2L	15336771	2L_15336771_SNP [dm3] 2L_15336771_SNP [dm6]	G	A	1.576e^-4	0.959	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	1.578e^-4	0.959	INTRON CG5888
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	1.579e^-4	0.959	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	16722636	X_16722636_SNP [dm3] X_16828603_SNP [dm6]	A	G	1.588e^-4	0.959	UPSTREAM CG13004 INTRON CG13004
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	1.589e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12090757	2R_12090757_SNP [dm3] 2R_16203252_SNP [dm6]	G	A	1.598e^-4	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	19568721	2R_19568721_SNP [dm3] 2R_23681198_SNP [dm6]	A	T	1.602e^-4	0.959	UPSTREAM St1 DOWNSTREAM Pde8 INTERGENIC
2L	5764688	2L_5764688_SNP [dm3] 2L_5764688_SNP [dm6]	A	T	1.605e^-4	0.959	INTRON obst-E
2L	5764692	2L_5764692_DEL [dm3] 2L_5764692_DEL [dm6]	AAT	A	1.605e^-4	0.959	INTRON obst-E
2L	5764696	2L_5764696_SNP [dm3] 2L_5764696_SNP [dm6]	T	A	1.605e^-4	0.959	INTRON obst-E
2R	12474951	2R_12474951_SNP [dm3] 2R_16587446_SNP [dm6]	G	T	1.606e^-4	0.959	NON_SYNONYMOUS_CODING CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	1.606e^-4	0.959	INTRON spri
2R	15131891	2R_15131891_SNP [dm3] 2R_19244386_SNP [dm6]	C	G	1.613e^-4	0.959	DOWNSTREAM cora INTERGENIC
2R	17864523	2R_17864523_SNP [dm3] 2R_21977018_SNP [dm6]	C	T	1.621e^-4	0.959	SYNONYMOUS_CODING Gr58c DOWNSTREAM CG9304	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2933209	X_2933209_SNP [dm3] X_3039176_SNP [dm6]	G	A	1.625e^-4	0.959	INTRON kirre
2L	16796951	2L_16796951_SNP [dm3] 2L_16796951_SNP [dm6]	A	G	1.631e^-4	0.959	SYNONYMOUS_CODING Ugt36Bb DOWNSTREAM Ugt36Ba
3R	25110236	3R_25110236_INS [dm3] 3R_29284514_INS [dm6]	T	TT	1.633e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2L	16397509	2L_16397509_SNP [dm3] 2L_16397509_SNP [dm6]	G	A	1.639e^-4	0.959	INTERGENIC
2R	17085887	2R_17085887_SNP [dm3] 2R_21198382_SNP [dm6]	G	A	1.642e^-4	0.959	SYNONYMOUS_CODING Lapsyn
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	1.647e^-4	0.959	INTRON msi
2L	9039925	2L_9039925_SNP [dm3] 2L_9039925_SNP [dm6]	T	A	1.648e^-4	0.959	INTERGENIC
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	1.651e^-4	0.959	DOWNSTREAM CG3982 INTRON CG3967
3L	5927053	3L_5927053_SNP [dm3] 3L_5933953_SNP [dm6]	G	A	1.653e^-4	0.959	SYNONYMOUS_CODING CG33993
X	16722617	X_16722617_SNP [dm3] X_16828584_SNP [dm6]	A	G	1.655e^-4	0.959	UPSTREAM CG13004 INTRON CG13004
3L	17106305	3L_17106305_SNP [dm3] 3L_17113205_SNP [dm6]	G	T	1.655e^-4	0.959	INTRON Rbp6	TF binding site mE1_TFBS_cad
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.657e^-4	0.959	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.657e^-4	0.959	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	14659853	2L_14659853_SNP [dm3] 2L_14659853_SNP [dm6]	T	C	1.667e^-4	0.959	INTRON osp
X	4315485	X_4315485_SNP [dm3] X_4421452_SNP [dm6]	T	C	1.670e^-4	0.959	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	19232020	3R_19232020_SNP [dm3] 3R_23406298_SNP [dm6]	T	G	1.678e^-4	0.959	SYNONYMOUS_CODING Ir94e
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	1.681e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	1.685e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	19644765	3L_19644765_SNP [dm3] 3L_19651665_SNP [dm6]	G	A	1.687e^-4	0.959	NON_SYNONYMOUS_CODING tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	21118249	2L_21118249_SNP [dm3] 2L_21118249_SNP [dm6]	T	A	1.695e^-4	0.959	INTRON Nhe2
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	1.699e^-4	0.959	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	1.699e^-4	0.959	INTRON baz
2L	19949748	2L_19949748_SNP [dm3] 2L_19949748_SNP [dm6]	A	C	1.708e^-4	0.959	INTRON sick	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	1496810	2R_1496810_SNP [dm3] 2R_5609305_SNP [dm6]	A	T	1.723e^-4	0.959	SYNONYMOUS_CODING CG17508
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.724e^-4	0.959	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	1.726e^-4	0.959	UPSTREAM CG2127 & 1 other INTRON pdm3
3R	14105661	3R_14105661_SNP [dm3] 3R_18279939_SNP [dm6]	A	T	1.747e^-4	0.959	UPSTREAM CG7142 INTRON eIF-1A
2R	13231183	2R_13231183_SNP [dm3] 2R_17343678_SNP [dm6]	T	A	1.749e^-4	0.959	INTRON mbl
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	1.756e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	3324929	3R_3324929_SNP [dm3] 3R_7499207_SNP [dm6]	T	A	1.761e^-4	0.959	INTRON alpha-Est9
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	1.770e^-4	0.959	INTRON Wnt6
2L	9013891	2L_9013891_SNP [dm3] 2L_9013891_SNP [dm6]	G	T	1.772e^-4	0.959	NON_SYNONYMOUS_CODING Rcd-1r UTR_3_PRIME CG13102	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	1.789e^-4	0.959	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	1.792e^-4	0.959	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
2R	12090765	2R_12090765_DEL [dm3] 2R_16203260_DEL [dm6]	TGCATC	T	1.806e^-4	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	1.822e^-4	0.959	INTRON rgn
3R	25983450	3R_25983450_SNP [dm3] 3R_30157728_SNP [dm6]	C	A	1.843e^-4	0.959	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4300964	2R_4300964_SNP [dm3] 2R_8413459_SNP [dm6]	C	G	1.844e^-4	0.959	INTERGENIC
2R	17786082	2R_17786082_SNP [dm3] 2R_21898577_SNP [dm6]	G	A	1.852e^-4	0.959	INTRON Fili
2L	5563204	2L_5563204_SNP [dm3] 2L_5563204_SNP [dm6]	A	T	1.853e^-4	0.959	INTRON GluRIIB	TF binding site mE1_TFBS_cad
2L	5606517	2L_5606517_DEL [dm3] 2L_5606517_DEL [dm6]	TAT	T	1.864e^-4	0.959	INTRON CG14010
3R	18064629	3R_18064629_SNP [dm3] 3R_22238907_SNP [dm6]	G	A	1.864e^-4	0.959	INTRON SKIP
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	1.868e^-4	0.959	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	10914946	3R_10914946_SNP [dm3] 3R_15089224_SNP [dm6]	A	T	1.872e^-4	0.959	INTRON CG6966	TF binding site mE1_TFBS_Trl
X	2884074	X_2884074_SNP [dm3] X_2990041_SNP [dm6]	A	T	1.875e^-4	0.959	INTRON kirre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z
2L	5626226	2L_5626226_DEL [dm3] 2L_5626226_DEL [dm6]	AA	A	1.882e^-4	0.959	DOWNSTREAM CG31646 INTERGENIC
3L	2885027	3L_2885027_SNP [dm3] 3L_2885027_SNP [dm6]	C	T	1.883e^-4	0.959	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8427243	2L_8427243_SNP [dm3] 2L_8427243_SNP [dm6]	T	C	1.885e^-4	0.959	NON_SYNONYMOUS_CODING Akap200	TF binding site mE1_TFBS_cad
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	1.886e^-4	0.959	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2390003	X_2390003_SNP [dm3] X_2495970_SNP [dm6]	A	G	1.904e^-4	0.959	SYNONYMOUS_CODING trol INTRON trol	TF binding site BDTNP1_TFBS_dl
3L	4504519	3L_4504519_SNP [dm3] 3L_4504519_SNP [dm6]	A	C	1.905e^-4	0.959	NON_SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
X	17956023	X_17956023_SNP [dm3] X_18061990_SNP [dm6]	T	C	1.918e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	2439206	2L_2439206_SNP [dm3] 2L_2439206_SNP [dm6]	T	A	1.919e^-4	0.959	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20285278	2L_20285278_SNP [dm3] 2L_20285278_SNP [dm6]	A	G	1.920e^-4	0.959	INTERGENIC
2L	21926289	2L_21926289_SNP [dm3] 2L_21926289_SNP [dm6]	G	A	1.926e^-4	0.959	INTERGENIC
X	5701703	X_5701703_SNP [dm3] X_5807670_SNP [dm6]	A	G	1.929e^-4	0.959	INTERGENIC
2R	13340588	2R_13340588_SNP [dm3] 2R_17453083_SNP [dm6]	G	A	1.932e^-4	0.959	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	1.937e^-4	0.959	INTRON Eip63E
2R	13247195	2R_13247195_SNP [dm3] 2R_17359690_SNP [dm6]	T	G	1.938e^-4	0.959	UTR_3_PRIME mbl INTRON mbl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15597150	2R_15597150_SNP [dm3] 2R_19709645_SNP [dm6]	C	T	1.939e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2L	8346704	2L_8346704_SNP [dm3] 2L_8346704_SNP [dm6]	C	A	1.941e^-4	0.959	UTR_5_PRIME CG7778	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	1.948e^-4	0.959	INTRON dlg1	TF binding site mE1_TFBS_HSA
3L	1263829	3L_1263829_SNP [dm3] 3L_1263829_SNP [dm6]	G	A	1.952e^-4	0.959	INTRON CG9134
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	1.964e^-4	0.959	INTRON CG42260
2R	8551615	2R_8551615_SNP [dm3] 2R_12664110_SNP [dm6]	A	G	1.965e^-4	0.959	INTRON nemy
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	1.971e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	6008235	3R_6008235_SNP [dm3] 3R_10182513_SNP [dm6]	C	T	1.971e^-4	0.959	INTRON CG12814
2L	4384423	2L_4384423_SNP [dm3] 2L_4384423_SNP [dm6]	T	C	1.976e^-4	0.959	SYNONYMOUS_CODING CG3338	TF binding site mE1_TFBS_cad
2L	3647837	2L_3647837_SNP [dm3] 2L_3647837_SNP [dm6]	G	A	1.985e^-4	0.959	INTRON for
2R	1489406	2R_1489406_SNP [dm3] 2R_5601901_SNP [dm6]	T	G	1.986e^-4	0.959	INTERGENIC
2R	13339670	2R_13339670_SNP [dm3] 2R_17452165_SNP [dm6]	G	C	1.987e^-4	0.959	START_GAINED mthl3 UTR_5_PRIME mthl3 UPSTREAM mthl3 INTRON mthl3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13339672	2R_13339672_INS [dm3] 2R_17452167_INS [dm6]	T	CATC	1.987e^-4	0.959	UTR_5_PRIME mthl3 UPSTREAM mthl3 INTRON mthl3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10266221	3L_10266221_SNP [dm3] 3L_10273121_SNP [dm6]	T	C	1.991e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	14917947	2L_14917947_INS [dm3] 2L_14917947_INS [dm6]	G	GG	1.992e^-4	0.959	INTRON CG42313
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	2.001e^-4	0.959	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16091206	X_16091206_SNP [dm3] X_16197173_SNP [dm6]	G	T	2.005e^-4	0.959	INTERGENIC
2L	3481236	2L_3481236_SNP [dm3] 2L_3481236_SNP [dm6]	A	G	2.008e^-4	0.959	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5745003	3R_5745003_SNP [dm3] 3R_9919281_SNP [dm6]	G	A	2.012e^-4	0.959	INTRON Glut4EF
2R	12476994	2R_12476994_SNP [dm3] 2R_16589489_SNP [dm6]	T	A	2.016e^-4	0.959	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
4	362690	4_362690_DEL [dm3] 4_342064_DEL [dm6]	ATT	A	2.022e^-4	0.959	INTRON PMCA
3L	14419064	3L_14419064_SNP [dm3] 3L_14425964_SNP [dm6]	T	A	2.023e^-4	0.959	INTRON bbg	TF binding site mE1_TFBS_cnc
2L	4767559	2L_4767559_SNP [dm3] 2L_4767559_SNP [dm6]	C	T	2.025e^-4	0.959	INTRON CG15630
3L	3007878	3L_3007878_SNP [dm3] 3L_3007878_SNP [dm6]	G	C	2.030e^-4	0.959	INTRON FMRFaR
X	17956015	X_17956015_SNP [dm3] X_18061982_SNP [dm6]	C	T	2.033e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	4555661	X_4555661_SNP [dm3] X_4661628_SNP [dm6]	C	T	2.040e^-4	0.959	INTRON CG3009	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18090569	3L_18090569_DEL [dm3] 3L_18097469_DEL [dm6]	GCCCCAAAATACCAAAATG...	G	2.050e^-4	0.959	INTRON CG13698
2L	19913514	2L_19913514_SNP [dm3] 2L_19913514_SNP [dm6]	C	A	2.059e^-4	0.959	START_LOST Victoria INTRON sick
3L	18946208	3L_18946208_SNP [dm3] 3L_18953108_SNP [dm6]	T	A	2.060e^-4	0.959	INTRON CG6836
3L	6224455	3L_6224455_SNP [dm3] 3L_6231355_SNP [dm6]	T	A	2.066e^-4	0.959	DOWNSTREAM CG13299 INTERGENIC
3L	3796037	3L_3796037_DEL [dm3] 3L_3796037_DEL [dm6]	GA	G	2.077e^-4	0.959	INTRON CG32264
2R	8481659	2R_8481659_SNP [dm3] 2R_12594154_SNP [dm6]	C	A	2.082e^-4	0.959	UPSTREAM CR45279 DOWNSTREAM CR43909 INTRON Amph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	21380294	3R_21380294_SNP [dm3] 3R_25554572_SNP [dm6]	C	A	2.085e^-4	0.959	INTRON msi
3R	19231132	3R_19231132_SNP [dm3] 3R_23405410_SNP [dm6]	G	A	2.086e^-4	0.959	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
2L	6800474	2L_6800474_SNP [dm3] 2L_6800474_SNP [dm6]	C	T	2.103e^-4	0.959	NON_SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3L	3765023	3L_3765023_SNP [dm3] 3L_3765023_SNP [dm6]	G	A	2.104e^-4	0.959	INTRON CG32264
2L	17743152	2L_17743152_SNP [dm3] 2L_17743152_SNP [dm6]	G	T	2.113e^-4	0.959	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13340626	2R_13340626_SNP [dm3] 2R_17453121_SNP [dm6]	T	A	2.141e^-4	0.959	UPSTREAM CG10764 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6021168	3R_6021168_SNP [dm3] 3R_10195446_SNP [dm6]	G	A	2.143e^-4	0.959	INTRON Syn
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	2.151e^-4	0.959	INTRON beat-Ib
3L	10266108	3L_10266108_SNP [dm3] 3L_10273008_SNP [dm6]	T	A	2.151e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	17284518	2L_17284518_INS [dm3] 2L_17284518_INS [dm6]	A	AA	2.156e^-4	0.959	INTERGENIC
3R	22525466	3R_22525466_SNP [dm3] 3R_26699744_SNP [dm6]	T	C	2.157e^-4	0.959	SYNONYMOUS_CODING amon
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	2.160e^-4	0.959	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	12844944	X_12844944_SNP [dm3] X_12950911_SNP [dm6]	A	G	2.167e^-4	0.959	UTR_3_PRIME hec DOWNSTREAM hec & 1 other
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	2.171e^-4	0.959	INTRON baz
2L	19934550	2L_19934550_SNP [dm3] 2L_19934550_SNP [dm6]	A	T	2.180e^-4	0.959	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_dl
X	13173452	X_13173452_SNP [dm3] X_13279419_SNP [dm6]	G	A	2.185e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8551734	2R_8551734_INS [dm3] 2R_12664229_INS [dm6]	G	GCTTCTACGAAG...	2.185e^-4	0.959	INTRON nemy
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	2.186e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	2.186e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	1549813	3R_1549813_SNP [dm3] 3R_5724091_SNP [dm6]	C	T	2.196e^-4	0.959	EXON CR44924	TF binding site BDTNP1_TFBS_gt
3L	5810862	3L_5810862_SNP [dm3] 3L_5817762_SNP [dm6]	G	T	2.196e^-4	0.959	INTRON vn
3L	10266229	3L_10266229_SNP [dm3] 3L_10273129_SNP [dm6]	T	C	2.208e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	3634187	3L_3634187_SNP [dm3] 3L_3634187_SNP [dm6]	A	T	2.211e^-4	0.959	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1412861	2R_1412861_SNP [dm3] 2R_5525356_SNP [dm6]	A	C	2.212e^-4	0.959	INTRON CG30438
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	2.215e^-4	0.959	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	9278604	3L_9278604_SNP [dm3] 3L_9285504_SNP [dm6]	G	C	2.220e^-4	0.959	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3R	5282187	3R_5282187_SNP [dm3] 3R_9456465_SNP [dm6]	T	A	2.230e^-4	0.959	UTR_5_PRIME GstZ1 DOWNSTREAM ps & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19490716	3R_19490716_SNP [dm3] 3R_23664994_SNP [dm6]	G	A	2.248e^-4	0.959	INTRON CG31145
3R	19490790	3R_19490790_SNP [dm3] 3R_23665068_SNP [dm6]	G	A	2.248e^-4	0.959	INTRON CG31145
2L	3977876	2L_3977876_SNP [dm3] 2L_3977876_SNP [dm6]	C	T	2.254e^-4	0.959	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14297428	3R_14297428_SNP [dm3] 3R_18471706_SNP [dm6]	G	T	2.261e^-4	0.959	INTRON fru
3R	11792561	3R_11792561_SNP [dm3] 3R_15966839_SNP [dm6]	G	A	2.261e^-4	0.959	NON_SYNONYMOUS_CODING Rbf2
3L	18095220	3L_18095220_DEL [dm3] 3L_18102120_DEL [dm6]	AA	A	2.277e^-4	0.959	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	25563316	3R_25563316_SNP [dm3] 3R_29737594_SNP [dm6]	A	T	2.280e^-4	0.959	NON_SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3871908	3L_3871908_SNP [dm3] 3L_3871908_SNP [dm6]	A	G	2.286e^-4	0.959	INTERGENIC
2L	4631806	2L_4631806_SNP [dm3] 2L_4631806_SNP [dm6]	G	A	2.291e^-4	0.959	INTERGENIC
2L	13240661	2L_13240661_SNP [dm3] 2L_13240661_SNP [dm6]	G	T	2.304e^-4	0.959	NON_SYNONYMOUS_CODING CG5945	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11599335	X_11599335_SNP [dm3] X_11705302_SNP [dm6]	C	G	2.320e^-4	0.959	UPSTREAM CG2444 DOWNSTREAM PhKgamma INTERGENIC	TF binding site mE1_TFBS_cad
3R	19232059	3R_19232059_SNP [dm3] 3R_23406337_SNP [dm6]	A	G	2.321e^-4	0.959	SYNONYMOUS_CODING Ir94e
3R	22219015	3R_22219015_SNP [dm3] 3R_26393293_SNP [dm6]	T	A	2.321e^-4	0.959	INTERGENIC
2R	6490043	2R_6490043_SNP [dm3] 2R_10602538_SNP [dm6]	T	C	2.322e^-4	0.959	INTRON psq	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	16763291	X_16763291_SNP [dm3] X_16869258_SNP [dm6]	G	A	2.327e^-4	0.959	INTRON CG13003
X	13177139	X_13177139_SNP [dm3] X_13283106_SNP [dm6]	A	C	2.329e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15769112	2R_15769112_DEL [dm3] 2R_19881607_DEL [dm6]	TTT	T	2.333e^-4	0.959	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11072288	2R_11072288_SNP [dm3] 2R_15184783_SNP [dm6]	G	C	2.336e^-4	0.959	UPSTREAM CG43068 INTRON igl
2L	6800712	2L_6800712_SNP [dm3] 2L_6800712_SNP [dm6]	G	T	2.342e^-4	0.959	DOWNSTREAM tRNA:CR31631 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
3R	18807675	3R_18807675_SNP [dm3] 3R_22981953_SNP [dm6]	T	A	2.346e^-4	0.959	INTRON Nha2
2L	4988400	2L_4988400_SNP [dm3] 2L_4988400_SNP [dm6]	C	T	2.369e^-4	0.959	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5967484	X_5967484_SNP [dm3] X_6073451_SNP [dm6]	C	T	2.376e^-4	0.959	UPSTREAM Tsp5D INTRON Tsp5D
2R	14537405	2R_14537405_SNP [dm3] 2R_18649900_SNP [dm6]	A	G	2.378e^-4	0.959	INTRON SP2637
2L	8997680	2L_8997680_SNP [dm3] 2L_8997680_SNP [dm6]	G	T	2.385e^-4	0.959	UPSTREAM alien & 1 other INTRON CG18661	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
X	21453694	X_21453694_SNP [dm3] X_21582667_SNP [dm6]	G	C	2.389e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	6537990	2L_6537990_SNP [dm3] 2L_6537990_SNP [dm6]	A	G	2.391e^-4	0.959	INTRON eya	TF binding site mE1_TFBS_sens
3R	10003972	3R_10003972_SNP [dm3] 3R_14178250_SNP [dm6]	A	G	2.395e^-4	0.959	SYNONYMOUS_CODING Dop1R1
X	5967555	X_5967555_SNP [dm3] X_6073522_SNP [dm6]	C	T	2.397e^-4	0.959	UPSTREAM Tsp5D INTRON Tsp5D
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	2.400e^-4	0.959	INTRON sick
X	8327919	X_8327919_SNP [dm3] X_8433886_SNP [dm6]	C	A	2.404e^-4	0.959	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
2R	10113389	2R_10113389_SNP [dm3] 2R_14225884_SNP [dm6]	T	C	2.415e^-4	0.959	INTRON CG8468
2R	11479199	2R_11479199_MNP [dm3] 2R_15591694_MNP [dm6]	TGA	ATT	2.417e^-4	0.959	INTERGENIC
X	521432	X_521432_SNP [dm3] X_627399_SNP [dm6]	G	A	2.418e^-4	0.959	UTR_3_PRIME CG17829 DOWNSTREAM RpL36	TF binding site mE1_TFBS_sens
2R	1490574	2R_1490574_SNP [dm3] 2R_5603069_SNP [dm6]	T	A	2.422e^-4	0.959	DOWNSTREAM Fis1 INTERGENIC
X	3213243	X_3213243_SNP [dm3] X_3319210_SNP [dm6]	G	A	2.425e^-4	0.959	INTRON dnc & 1 other
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	2.444e^-4	0.959	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20285198	2L_20285198_SNP [dm3] 2L_20285198_SNP [dm6]	G	T	2.452e^-4	0.959	INTERGENIC
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	2.460e^-4	0.959	DOWNSTREAM CG14017 INTRON GluRIIA
2R	14324529	2R_14324529_DEL [dm3] 2R_18437024_DEL [dm6]	TCCTCT	T	2.470e^-4	0.959	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7763463	2R_7763463_SNP [dm3] 2R_11875958_SNP [dm6]	A	C	2.475e^-4	0.959	SYNONYMOUS_CODING CG13185
3R	19392080	3R_19392080_SNP [dm3] 3R_23566358_SNP [dm6]	G	A	2.479e^-4	0.959	INTRON beat-IV
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	2.482e^-4	0.959	DOWNSTREAM CR44792 INTERGENIC
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	2.509e^-4	0.959	INTERGENIC
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	2.528e^-4	0.959	UPSTREAM bbg INTRON bbg
2R	12474952	2R_12474952_SNP [dm3] 2R_16587447_SNP [dm6]	G	A	2.529e^-4	0.959	SYNONYMOUS_CODING CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3794225	2L_3794225_SNP [dm3] 2L_3794225_SNP [dm6]	T	C	2.532e^-4	0.959	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
X	16878245	X_16878245_SNP [dm3] X_16984212_SNP [dm6]	C	G	2.548e^-4	0.959	INTRON CG45002
2R	15196064	2R_15196064_SNP [dm3] 2R_19308559_SNP [dm6]	G	A	2.550e^-4	0.959	INTRON EndoB
2R	7763382	2R_7763382_SNP [dm3] 2R_11875877_SNP [dm6]	C	T	2.550e^-4	0.959	SYNONYMOUS_CODING CG13185
2R	17514285	2R_17514285_SNP [dm3] 2R_21626780_SNP [dm6]	G	A	2.552e^-4	0.959	INTRON mahj
3L	13704840	3L_13704840_DEL [dm3] 3L_13711740_DEL [dm6]	CG	C	2.574e^-4	0.959	INTRON bru-3
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	2.585e^-4	0.959	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3L	9525707	3L_9525707_SNP [dm3] 3L_9532607_SNP [dm6]	A	C	2.589e^-4	0.959	INTERGENIC
2R	12616387	2R_12616387_SNP [dm3] 2R_16728882_SNP [dm6]	G	A	2.592e^-4	0.959	INTRON CG30463
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	2.595e^-4	0.959	INTRON Eip63E
2L	20285197	2L_20285197_SNP [dm3] 2L_20285197_SNP [dm6]	G	A	2.600e^-4	0.959	INTERGENIC
2L	6038850	2L_6038850_SNP [dm3] 2L_6038850_SNP [dm6]	T	C	2.622e^-4	0.959	SYNONYMOUS_CODING CG31643 UPSTREAM CG9117	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2L	10392038	2L_10392038_SNP [dm3] 2L_10392038_SNP [dm6]	T	C	2.625e^-4	0.959	SYNONYMOUS_CODING da	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	12645926	3L_12645926_SNP [dm3] 3L_12652826_SNP [dm6]	C	T	2.639e^-4	0.959	INTRON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4534970	2R_4534970_SNP [dm3] 2R_8647465_SNP [dm6]	C	T	2.645e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16436473	2R_16436473_SNP [dm3] 2R_20548968_SNP [dm6]	A	G	2.658e^-4	0.959	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
3L	20901651	3L_20901651_SNP [dm3] 3L_20908551_SNP [dm6]	A	G	2.660e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_inv
2R	18565968	2R_18565968_SNP [dm3] 2R_22678463_SNP [dm6]	T	C	2.661e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	14469145	3L_14469145_SNP [dm3] 3L_14476045_SNP [dm6]	T	A	2.680e^-4	0.959	INTRON bbg
3L	14525216	3L_14525216_DEL [dm3] 3L_14532116_DEL [dm6]	CT	C	2.681e^-4	0.959	INTRON bbg
3L	1333247	3L_1333247_SNP [dm3] 3L_1333247_SNP [dm6]	T	C	2.681e^-4	0.959	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4158945	2R_4158945_SNP [dm3] 2R_8271440_SNP [dm6]	T	G	2.691e^-4	0.959	INTERGENIC
2L	9206970	2L_9206970_SNP [dm3] 2L_9206970_SNP [dm6]	A	C	2.699e^-4	0.959	INTRON tai
2R	20322072	2R_20322072_SNP [dm3] 2R_24434549_SNP [dm6]	C	T	2.703e^-4	0.959	INTERGENIC
2R	16597637	2R_16597637_SNP [dm3] 2R_20710132_SNP [dm6]	G	T	2.707e^-4	0.959	INTRON dpr
2L	7335484	2L_7335484_SNP [dm3] 2L_7335484_SNP [dm6]	A	G	2.708e^-4	0.959	INTRON Wnt6
2L	9817240	2L_9817240_SNP [dm3] 2L_9817240_SNP [dm6]	T	C	2.712e^-4	0.959	INTRON nAChRalpha6
X	13173739	X_13173739_SNP [dm3] X_13279706_SNP [dm6]	T	C	2.721e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	19894377	2L_19894377_SNP [dm3] 2L_19894377_SNP [dm6]	A	G	2.721e^-4	0.959	INTRON sick
3L	10876032	3L_10876032_SNP [dm3] 3L_10882932_SNP [dm6]	T	C	2.726e^-4	0.959	UTR_5_PRIME CG7949 UPSTREAM CG6409	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	2.728e^-4	0.959	INTRON kirre
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	2.732e^-4	0.959	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15131877	2R_15131877_SNP [dm3] 2R_19244372_SNP [dm6]	A	G	2.734e^-4	0.959	DOWNSTREAM cora INTERGENIC
3R	7877347	3R_7877347_SNP [dm3] 3R_12051625_SNP [dm6]	G	A	2.735e^-4	0.959	INTERGENIC
3L	9434693	3L_9434693_SNP [dm3] 3L_9441593_SNP [dm6]	C	G	2.735e^-4	0.959	SYNONYMOUS_CODING Nf-YA INTRON Bet3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	12141720	X_12141720_SNP [dm3] X_12247687_SNP [dm6]	A	G	2.745e^-4	0.959	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	13152430	X_13152430_SNP [dm3] X_13258397_SNP [dm6]	G	A	2.756e^-4	0.959	UTR_5_PRIME CG15742 & 1 other UPSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
X	12141655	X_12141655_SNP [dm3] X_12247622_SNP [dm6]	C	G	2.768e^-4	0.959	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	19894375	2L_19894375_SNP [dm3] 2L_19894375_SNP [dm6]	G	C	2.773e^-4	0.959	INTRON sick
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	2.775e^-4	0.959	UPSTREAM bbg INTRON bbg
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	2.775e^-4	0.959	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	12818502	3L_12818502_SNP [dm3] 3L_12825402_SNP [dm6]	T	A	2.780e^-4	0.959	UTR_3_PRIME CG10960 DOWNSTREAM CG42588	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11479213	2R_11479213_DEL [dm3] 2R_15591708_DEL [dm6]	CAAT	A	2.782e^-4	0.959	INTERGENIC
3L	22464468	3L_22464468_SNP [dm3] 3L_22471368_SNP [dm6]	G	C	2.783e^-4	0.959	INTRON CG11426
2L	17516832	2L_17516832_SNP [dm3] 2L_17516832_SNP [dm6]	C	T	2.795e^-4	0.959	SPLICE_SITE_REGION Dhc36C SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_cad
2R	9712547	2R_9712547_SNP [dm3] 2R_13825042_SNP [dm6]	G	C	2.796e^-4	0.959	NON_SYNONYMOUS_CODING CG13339 UPSTREAM fl_2_d	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	2.800e^-4	0.959	DOWNSTREAM CG6481 & 1 other INTRON Bx
2R	18063770	2R_18063770_SNP [dm3] 2R_22176265_SNP [dm6]	C	T	2.804e^-4	0.959	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	26394345	3R_26394345_SNP [dm3] 3R_30568623_SNP [dm6]	T	A	2.806e^-4	0.959	INTRON tmod	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	21180417	3R_21180417_SNP [dm3] 3R_25354695_SNP [dm6]	G	T	2.814e^-4	0.959	INTRON Fur1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
3R	20884811	3R_20884811_SNP [dm3] 3R_25059089_SNP [dm6]	T	C	2.824e^-4	0.959	UTR_5_PRIME Unc-13-4B INTRON Unc-13-4B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20321612	2R_20321612_SNP [dm3] 2R_24434089_SNP [dm6]	G	A	2.833e^-4	0.959	INTERGENIC
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	2.833e^-4	0.959	UTR_3_PRIME CG10562
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	2.834e^-4	0.959	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3120840	3L_3120840_SNP [dm3] 3L_3120840_SNP [dm6]	C	A	2.836e^-4	0.959	SYNONYMOUS_CODING prominin-like
3L	16861727	3L_16861727_SNP [dm3] 3L_16868627_SNP [dm6]	T	G	2.836e^-4	0.959	INTRON Lmpt
2L	17706801	2L_17706801_SNP [dm3] 2L_17706801_SNP [dm6]	C	A	2.837e^-4	0.959	DOWNSTREAM CG43231 INTRON CadN
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	2.842e^-4	0.959	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	19923394	2L_19923394_SNP [dm3] 2L_19923394_SNP [dm6]	G	A	2.851e^-4	0.959	INTRON sick EXON CR43827
3L	21470605	3L_21470605_SNP [dm3] 3L_21477505_SNP [dm6]	T	A	2.856e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	2.872e^-4	0.959	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	2.872e^-4	0.959	INTRON baz
X	4836549	X_4836549_SNP [dm3] X_4942516_SNP [dm6]	A	G	2.874e^-4	0.959	INTRON Ptp4E
2R	11479389	2R_11479389_SNP [dm3] 2R_15591884_SNP [dm6]	C	G	2.884e^-4	0.959	INTERGENIC
3L	12247236	3L_12247236_DEL [dm3] 3L_12254136_DEL [dm6]	TCTATTTTTA	T	2.895e^-4	0.959	INTRON app
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	2.901e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3020925	3L_3020925_SNP [dm3] 3L_3020925_SNP [dm6]	G	A	2.905e^-4	0.959	INTERGENIC
X	11609597	X_11609597_SNP [dm3] X_11715564_SNP [dm6]	T	C	2.906e^-4	0.959	UTR_5_PRIME Amun UPSTREAM Amun DOWNSTREAM CR45618	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20238975	2R_20238975_SNP [dm3] 2R_24351452_SNP [dm6]	A	G	2.907e^-4	0.959	UPSTREAM CG44812 DOWNSTREAM CR44811 INTRON bs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8192518	X_8192518_SNP [dm3] X_8298485_SNP [dm6]	G	A	2.912e^-4	0.959	INTRON nAChRalpha3
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	2.915e^-4	0.959	INTRON msi
3L	14763115	3L_14763115_SNP [dm3] 3L_14770015_SNP [dm6]	A	T	2.922e^-4	0.959	NON_SYNONYMOUS_CODING mop UPSTREAM CG17173
2L	21926292	2L_21926292_SNP [dm3] 2L_21926292_SNP [dm6]	C	G	2.922e^-4	0.959	INTERGENIC
X	7944374	X_7944374_SNP [dm3] X_8050341_SNP [dm6]	A	G	2.931e^-4	0.959	INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	2.934e^-4	0.959	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20241340	2L_20241340_SNP [dm3] 2L_20241340_SNP [dm6]	A	T	2.935e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12090533	2R_12090533_SNP [dm3] 2R_16203028_SNP [dm6]	G	T	2.936e^-4	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	2.938e^-4	0.959	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	14871330	3R_14871330_SNP [dm3] 3R_19045608_SNP [dm6]	T	G	2.940e^-4	0.959	UTR_3_PRIME cdi DOWNSTREAM cdi & 1 other
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	2.941e^-4	0.959	INTRON beat-Ib
2R	10897837	2R_10897837_SNP [dm3] 2R_15010332_SNP [dm6]	T	G	2.944e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
2R	16994540	2R_16994540_DEL [dm3] 2R_21107035_DEL [dm6]	TTTCCATTCCT...	T	2.946e^-4	0.959	INTRON ktub
2R	19501983	2R_19501983_SNP [dm3] 2R_23614460_SNP [dm6]	C	T	2.953e^-4	0.959	INTRON CG17664 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	19879742	2L_19879742_INS [dm3] 2L_19879742_INS [dm6]	A	AT	2.955e^-4	0.959	INTRON sick
2L	16647346	2L_16647346_SNP [dm3] 2L_16647346_SNP [dm6]	A	T	2.960e^-4	0.959	INTRON CG42389
3R	8435592	3R_8435592_SNP [dm3] 3R_12609870_SNP [dm6]	A	T	2.969e^-4	0.959	INTERGENIC
3L	10265975	3L_10265975_INS [dm3] 3L_10272875_INS [dm6]	T	TGGAAGAT	2.996e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	2530677	3L_2530677_SNP [dm3] 3L_2530677_SNP [dm6]	G	A	3.003e^-4	0.959	INTRON Spn	TF binding site mE1_TFBS_bab1
3L	10266282	3L_10266282_SNP [dm3] 3L_10273182_SNP [dm6]	T	C	3.005e^-4	0.959	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	5967638	X_5967638_DEL [dm3] X_6073605_DEL [dm6]	TG	T	3.006e^-4	0.959	UPSTREAM Tsp5D INTRON Tsp5D
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	3.010e^-4	0.959	INTRON CG13698
4	338749	4_338749_INS [dm3] 4_318123_INS [dm6]	A	AA	3.010e^-4	0.959	INTRON CG32850	TF binding site mE1_TFBS_Trl
2L	4635622	2L_4635622_SNP [dm3] 2L_4635622_SNP [dm6]	T	A	3.013e^-4	0.959	INTERGENIC
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	3.016e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	12060914	3L_12060914_SNP [dm3] 3L_12067814_SNP [dm6]	T	A	3.025e^-4	0.959	UTR_3_PRIME Sema-5c
3L	12092434	3L_12092434_SNP [dm3] 3L_12099334_SNP [dm6]	C	G	3.027e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5086569	X_5086569_SNP [dm3] X_5192536_SNP [dm6]	G	A	3.033e^-4	0.959	INTRON rg & 1 other	TF binding site mE1_TFBS_Trl
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	3.035e^-4	0.959	DOWNSTREAM CG3982 INTRON CG3967
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	3.039e^-4	0.959	INTERGENIC
3R	13374226	3R_13374226_SNP [dm3] 3R_17548504_SNP [dm6]	T	G	3.041e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	3.046e^-4	0.959	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	6489102	3R_6489102_SNP [dm3] 3R_10663380_SNP [dm6]	A	C	3.066e^-4	0.959	INTERGENIC
3R	20938395	3R_20938395_SNP [dm3] 3R_25112673_SNP [dm6]	T	C	3.069e^-4	0.959	UPSTREAM CG13650 DOWNSTREAM CG31108 INTERGENIC
3L	16662038	3L_16662038_SNP [dm3] 3L_16668938_SNP [dm6]	T	C	3.074e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2R	7403431	2R_7403431_SNP [dm3] 2R_11515926_SNP [dm6]	C	T	3.077e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	4936737	3R_4936737_SNP [dm3] 3R_9111015_SNP [dm6]	A	T	3.082e^-4	0.959	INTRON pum
3R	10915445	3R_10915445_SNP [dm3] 3R_15089723_SNP [dm6]	G	T	3.091e^-4	0.959	INTRON CG6966	TF binding site mE1_TFBS_Trl
3R	12723372	3R_12723372_SNP [dm3] 3R_16897650_SNP [dm6]	C	T	3.093e^-4	0.959	INTRON iab-8 EXON CR43617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13021316	2L_13021316_SNP [dm3] 2L_13021316_SNP [dm6]	C	A	3.096e^-4	0.959	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18253671	3L_18253671_SNP [dm3] 3L_18260571_SNP [dm6]	T	A	3.102e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	25061203	3R_25061203_SNP [dm3] 3R_29235481_SNP [dm6]	A	C	3.113e^-4	0.959	NON_SYNONYMOUS_CODING CG11951 UTR_3_PRIME CG11951 DOWNSTREAM CG15817	TF binding site mE1_TFBS_sens
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	3.124e^-4	0.959	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	3.128e^-4	0.959	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
X	6264854	X_6264854_SNP [dm3] X_6370821_SNP [dm6]	C	A	3.130e^-4	0.959	UTR_3_PRIME Marf DOWNSTREAM PpV EXON CR44816
3L	23075295	3L_23075295_SNP [dm3] 3L_23082195_SNP [dm6]	A	C	3.136e^-4	0.959	INTERGENIC
2L	14659830	2L_14659830_SNP [dm3] 2L_14659830_SNP [dm6]	C	T	3.141e^-4	0.959	INTRON osp
2L	7338811	2L_7338811_SNP [dm3] 2L_7338811_SNP [dm6]	A	T	3.142e^-4	0.959	INTRON Wnt6
2L	5569714	2L_5569714_SNP [dm3] 2L_5569714_SNP [dm6]	A	C	3.150e^-4	0.959	INTERGENIC
X	5788962	X_5788962_SNP [dm3] X_5894929_SNP [dm6]	G	A	3.151e^-4	0.959	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	16873982	3L_16873982_SNP [dm3] 3L_16880882_SNP [dm6]	T	C	3.153e^-4	0.959	INTRON Lmpt
3L	1879245	3L_1879245_SNP [dm3] 3L_1879245_SNP [dm6]	C	T	3.160e^-4	0.959	INTRON CG13937
2R	1489765	2R_1489765_SNP [dm3] 2R_5602260_SNP [dm6]	A	G	3.169e^-4	0.959	INTERGENIC
X	8882729	X_8882729_SNP [dm3] X_8988696_SNP [dm6]	G	A	3.172e^-4	0.959	INTRON rdgA & 1 other
3L	10209342	3L_10209342_SNP [dm3] 3L_10216242_SNP [dm6]	C	T	3.174e^-4	0.959	SYNONYMOUS_CODING CG8065
X	22065183	X_22065183_SNP [dm3] X_22663347_SNP [dm6]	A	G	3.177e^-4	0.959	INTRON CR44997
3L	1677542	3L_1677542_SNP [dm3] 3L_1677542_SNP [dm6]	T	G	3.181e^-4	0.959	INTRON CG7991	TF binding site mE1_TFBS_chinmo
X	18414675	X_18414675_SNP [dm3] X_18520642_SNP [dm6]	T	C	3.191e^-4	0.959	DOWNSTREAM CG6481 & 1 other INTRON Bx
2L	13393756	2L_13393756_SNP [dm3] 2L_13393756_SNP [dm6]	G	T	3.205e^-4	0.959	UTR_3_PRIME RpL24 & 1 other DOWNSTREAM RpL24	TF binding site mE1_TFBS_cad
3L	1333248	3L_1333248_SNP [dm3] 3L_1333248_SNP [dm6]	T	C	3.206e^-4	0.959	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16226768	3L_16226768_SNP [dm3] 3L_16233668_SNP [dm6]	T	G	3.206e^-4	0.959	NON_SYNONYMOUS_CODING Hsc20 UPSTREAM l_3_72Dp DOWNSTREAM MED10	TF binding site mE1_TFBS_inv
X	4836628	X_4836628_SNP [dm3] X_4942595_SNP [dm6]	G	A	3.210e^-4	0.959	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	3.218e^-4	0.959	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13648066	2R_13648066_SNP [dm3] 2R_17760561_SNP [dm6]	T	C	3.231e^-4	0.959	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9997604	2L_9997604_SNP [dm3] 2L_9997604_SNP [dm6]	C	T	3.240e^-4	0.959	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3L	5969389	3L_5969389_SNP [dm3] 3L_5976289_SNP [dm6]	T	C	3.240e^-4	0.959	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	7614339	X_7614339_SNP [dm3] X_7720306_SNP [dm6]	G	A	3.245e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10544981	X_10544981_SNP [dm3] X_10650948_SNP [dm6]	A	G	3.263e^-4	0.959	INTRON X11Lbeta
2L	13021373	2L_13021373_SNP [dm3] 2L_13021373_SNP [dm6]	A	G	3.271e^-4	0.959	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13021375	2L_13021375_SNP [dm3] 2L_13021375_SNP [dm6]	T	G	3.271e^-4	0.959	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	3.273e^-4	0.959	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
2L	3402881	2L_3402881_SNP [dm3] 2L_3402881_SNP [dm6]	T	G	3.273e^-4	0.959	INTERGENIC
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	3.282e^-4	0.959	INTRON kirre
2R	13536503	2R_13536503_SNP [dm3] 2R_17648998_SNP [dm6]	G	T	3.286e^-4	0.959	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18414525	X_18414525_SNP [dm3] X_18520492_SNP [dm6]	C	T	3.294e^-4	0.959	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	18806015	3R_18806015_SNP [dm3] 3R_22980293_SNP [dm6]	G	A	3.302e^-4	0.959	INTERGENIC
3L	14763134	3L_14763134_SNP [dm3] 3L_14770034_SNP [dm6]	T	C	3.311e^-4	0.959	SYNONYMOUS_CODING mop UPSTREAM CG17173
2L	19933467	2L_19933467_SNP [dm3] 2L_19933467_SNP [dm6]	T	A	3.314e^-4	0.959	DOWNSTREAM CR45183 INTRON sick
X	3704104	X_3704104_SNP [dm3] X_3810071_SNP [dm6]	C	T	3.315e^-4	0.959	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10019020	3R_10019020_SNP [dm3] 3R_14193298_SNP [dm6]	G	C	3.315e^-4	0.959	INTRON Dop1R1
3R	26994551	3R_26994551_SNP [dm3] 3R_31168829_SNP [dm6]	T	G	3.321e^-4	0.959	UTR_5_PRIME stops UPSTREAM stops INTRON Gycbeta100B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	4750473	2L_4750473_SNP [dm3] 2L_4750473_SNP [dm6]	T	C	3.332e^-4	0.959	INTRON CG15630
3L	16889114	3L_16889114_SNP [dm3] 3L_16896014_SNP [dm6]	T	G	3.337e^-4	0.959	INTRON Lmpt
3L	9278606	3L_9278606_SNP [dm3] 3L_9285506_SNP [dm6]	C	A	3.352e^-4	0.959	NON_SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3L	10590789	3L_10590789_SNP [dm3] 3L_10597689_SNP [dm6]	G	A	3.355e^-4	0.959	INTERGENIC
X	4836891	X_4836891_SNP [dm3] X_4942858_SNP [dm6]	C	T	3.356e^-4	0.959	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	14954631	2L_14954631_SNP [dm3] 2L_14954631_SNP [dm6]	G	C	3.362e^-4	0.959	INTRON CG42313
3L	1332254	3L_1332254_SNP [dm3] 3L_1332254_SNP [dm6]	C	T	3.363e^-4	0.959	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1332260	3L_1332260_SNP [dm3] 3L_1332260_SNP [dm6]	C	T	3.363e^-4	0.959	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1333255	3L_1333255_SNP [dm3] 3L_1333255_SNP [dm6]	T	G	3.363e^-4	0.959	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15317828	X_15317828_SNP [dm3] X_15423795_SNP [dm6]	G	A	3.367e^-4	0.959	INTRON Cngl
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	3.370e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3R	26005348	3R_26005348_SNP [dm3] 3R_30179626_SNP [dm6]	A	T	3.371e^-4	0.959	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	2427368	3L_2427368_INS [dm3] 3L_2427368_INS [dm6]	C	CCC	3.372e^-4	0.959	INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	18245325	3L_18245325_SNP [dm3] 3L_18252225_SNP [dm6]	T	C	3.376e^-4	0.959	SYNONYMOUS_CODING CheA75a
3R	15821043	3R_15821043_SNP [dm3] 3R_19995321_SNP [dm6]	C	A	3.384e^-4	0.959	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17824035	3R_17824035_SNP [dm3] 3R_21998313_SNP [dm6]	A	G	3.392e^-4	0.959	INTRON Eip93F
2R	9746360	2R_9746360_SNP [dm3] 2R_13858855_SNP [dm6]	T	A	3.394e^-4	0.959	UPSTREAM Uba3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	17201842	X_17201842_SNP [dm3] X_17307809_SNP [dm6]	C	T	3.408e^-4	0.959	INTERGENIC
2L	19882198	2L_19882198_SNP [dm3] 2L_19882198_SNP [dm6]	C	G	3.409e^-4	0.959	INTRON sick
2L	12253880	2L_12253880_SNP [dm3] 2L_12253880_SNP [dm6]	G	A	3.413e^-4	0.959	INTRON aret
X	17075774	X_17075774_SNP [dm3] X_17181741_SNP [dm6]	G	C	3.424e^-4	0.959	INTRON baz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	16979277	X_16979277_SNP [dm3] X_17085244_SNP [dm6]	C	A	3.432e^-4	0.959	NON_SYNONYMOUS_CODING CG8945
X	14400834	X_14400834_INS [dm3] X_14506801_INS [dm6]	A	ATGGCCA	3.435e^-4	0.959	INTERGENIC
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	3.450e^-4	0.959	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18215850	3R_18215850_SNP [dm3] 3R_22390128_SNP [dm6]	C	G	3.453e^-4	0.959	UTR_5_PRIME CG7059 UPSTREAM CG5379 & 1 other INTRON CG7059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	3.457e^-4	0.959	INTRON mam
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	3.462e^-4	0.959	NON_SYNONYMOUS_CODING bbg
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	3.482e^-4	0.959	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7403419	2R_7403419_SNP [dm3] 2R_11515914_SNP [dm6]	T	A	3.487e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
4	538320	4_538320_SNP [dm3] 4_517694_SNP [dm6]	T	A	3.497e^-4	0.959	INTRON zfh2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7717385	3L_7717385_SNP [dm3] 3L_7724285_SNP [dm6]	C	T	3.503e^-4	0.959	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	23075333	3L_23075333_DEL [dm3] 3L_23082233_DEL [dm6]	CCAATTGTA	G	3.505e^-4	0.959	INTERGENIC
2R	1488068	2R_1488068_SNP [dm3] 2R_5600563_SNP [dm6]	C	T	3.508e^-4	0.959	INTERGENIC	transposable element FlyBase
2R	1494344	2R_1494344_SNP [dm3] 2R_5606839_SNP [dm6]	C	G	3.508e^-4	0.959	INTERGENIC
2R	1499357	2R_1499357_DEL [dm3] 2R_5611852_DEL [dm6]	CATGCCGGGCGTCCTATTCT...	C	3.508e^-4	0.959	DOWNSTREAM CG17508 INTERGENIC
3L	14469426	3L_14469426_SNP [dm3] 3L_14476326_SNP [dm6]	A	G	3.511e^-4	0.959	INTRON bbg	TF binding site mE1_TFBS_Trl
3L	16186845	3L_16186845_SNP [dm3] 3L_16193745_SNP [dm6]	C	T	3.512e^-4	0.959	INTERGENIC
3R	25982574	3R_25982574_SNP [dm3] 3R_30156852_SNP [dm6]	A	G	3.519e^-4	0.959	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11448471	2L_11448471_SNP [dm3] 2L_11448471_SNP [dm6]	T	C	3.521e^-4	0.959	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	901094	3L_901094_SNP [dm3] 3L_901094_SNP [dm6]	T	C	3.524e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16825260	3R_16825260_SNP [dm3] 3R_20999538_SNP [dm6]	C	T	3.532e^-4	0.959	INTRON Calx
2L	20254264	2L_20254264_SNP [dm3] 2L_20254264_SNP [dm6]	C	T	3.533e^-4	0.959	EXON CR40465
2L	4631986	2L_4631986_SNP [dm3] 2L_4631986_SNP [dm6]	G	C	3.538e^-4	0.959	INTERGENIC
X	12290477	X_12290477_SNP [dm3] X_12396444_SNP [dm6]	C	A	3.554e^-4	0.959	INTERGENIC
X	10552027	X_10552027_SNP [dm3] X_10657994_SNP [dm6]	G	A	3.557e^-4	0.959	SYNONYMOUS_CODING CG2111 INTRON X11Lbeta	TF binding site mE1_TFBS_HSA
2L	19932267	2L_19932267_SNP [dm3] 2L_19932267_SNP [dm6]	G	A	3.557e^-4	0.959	INTRON sick
3L	16187579	3L_16187579_SNP [dm3] 3L_16194479_SNP [dm6]	C	A	3.558e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
2R	13339664	2R_13339664_SNP [dm3] 2R_17452159_SNP [dm6]	T	A	3.561e^-4	0.959	UTR_5_PRIME mthl3 UPSTREAM mthl3 INTRON mthl3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23562513	3R_23562513_DEL [dm3] 3R_27736791_DEL [dm6]	CAAGGCC	C	3.581e^-4	0.959	UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
3R	26994473	3R_26994473_SNP [dm3] 3R_31168751_SNP [dm6]	G	A	3.602e^-4	0.959	UPSTREAM stops INTRON Gycbeta100B & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	14564886	3L_14564886_SNP [dm3] 3L_14571786_SNP [dm6]	C	A	3.608e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6213796	3L_6213796_SNP [dm3] 3L_6220696_SNP [dm6]	G	A	3.609e^-4	0.959	INTRON pncr008:3L
2L	7448009	2L_7448009_SNP [dm3] 2L_7448009_SNP [dm6]	G	C	3.612e^-4	0.959	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
3L	10287087	3L_10287087_SNP [dm3] 3L_10293987_SNP [dm6]	G	T	3.615e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3577382	3R_3577382_SNP [dm3] 3R_7751660_SNP [dm6]	C	G	3.628e^-4	0.959	INTERGENIC
2R	12647706	2R_12647706_SNP [dm3] 2R_16760201_SNP [dm6]	G	T	3.632e^-4	0.959	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7889440	2R_7889440_SNP [dm3] 2R_12001935_SNP [dm6]	T	A	3.638e^-4	0.959	UTR_3_PRIME otk
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	3.638e^-4	0.959	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	3.639e^-4	0.959	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	6213454	3L_6213454_SNP [dm3] 3L_6220354_SNP [dm6]	G	A	3.642e^-4	0.959	UPSTREAM pncr008:3L INTERGENIC
2R	1497856	2R_1497856_SNP [dm3] 2R_5610351_SNP [dm6]	A	C	3.645e^-4	0.959	DOWNSTREAM CG17508 INTRON CG17508
3L	11150867	3L_11150867_SNP [dm3] 3L_11157767_SNP [dm6]	A	C	3.646e^-4	0.959	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	19232074	3R_19232074_SNP [dm3] 3R_23406352_SNP [dm6]	C	T	3.651e^-4	0.959	SYNONYMOUS_CODING Ir94e
2L	19967109	2L_19967109_SNP [dm3] 2L_19967109_SNP [dm6]	G	C	3.651e^-4	0.959	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad
2L	6497753	2L_6497753_SNP [dm3] 2L_6497753_SNP [dm6]	T	C	3.676e^-4	0.959	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3L	965693	3L_965693_SNP [dm3] 3L_965693_SNP [dm6]	C	T	3.695e^-4	0.959	INTRON Glut1	TF binding site BDTNP1_TFBS_dl
2L	8346118	2L_8346118_SNP [dm3] 2L_8346118_SNP [dm6]	G	T	3.700e^-4	0.959	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22524189	3R_22524189_SNP [dm3] 3R_26698467_SNP [dm6]	A	T	3.705e^-4	0.959	UTR_3_PRIME amon
2L	6800496	2L_6800496_SNP [dm3] 2L_6800496_SNP [dm6]	A	T	3.711e^-4	0.959	SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3L	6680510	3L_6680510_SNP [dm3] 3L_6687410_SNP [dm6]	G	C	3.729e^-4	0.959	INTERGENIC
2L	13021327	2L_13021327_SNP [dm3] 2L_13021327_SNP [dm6]	T	A	3.730e^-4	0.959	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	22504628	3R_22504628_SNP [dm3] 3R_26678906_SNP [dm6]	T	C	3.730e^-4	0.959	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3126741	3L_3126741_SNP [dm3] 3L_3126741_SNP [dm6]	G	A	3.732e^-4	0.959	INTRON prominin-like	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11479133	2R_11479133_SNP [dm3] 2R_15591628_SNP [dm6]	C	G	3.735e^-4	0.959	INTERGENIC
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	3.773e^-4	0.959	SYNONYMOUS_CODING CG31321
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	3.774e^-4	0.959	INTERGENIC
3R	26937186	3R_26937186_SNP [dm3] 3R_31111464_SNP [dm6]	A	T	3.781e^-4	0.959	INTERGENIC
3R	26937197	3R_26937197_SNP [dm3] 3R_31111475_SNP [dm6]	C	T	3.781e^-4	0.959	INTERGENIC
2L	2670608	2L_2670608_SNP [dm3] 2L_2670608_SNP [dm6]	A	C	3.783e^-4	0.959	SYNONYMOUS_CODING Gr23a UPSTREAM Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	12060991	3L_12060991_SNP [dm3] 3L_12067891_SNP [dm6]	G	T	3.784e^-4	0.959	UTR_3_PRIME Sema-5c
3R	26008966	3R_26008966_SNP [dm3] 3R_30183244_SNP [dm6]	C	T	3.789e^-4	0.959	DOWNSTREAM CR44262 INTERGENIC
3R	17940965	3R_17940965_SNP [dm3] 3R_22115243_SNP [dm6]	C	A	3.798e^-4	0.959	DOWNSTREAM Ir94b & 1 other INTERGENIC
2R	12476956	2R_12476956_DEL [dm3] 2R_16589451_DEL [dm6]	AT	A	3.811e^-4	0.959	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7889427	2R_7889427_SNP [dm3] 2R_12001922_SNP [dm6]	C	T	3.833e^-4	0.959	UTR_3_PRIME otk
3L	14469170	3L_14469170_SNP [dm3] 3L_14476070_SNP [dm6]	A	G	3.837e^-4	0.959	INTRON bbg
3L	1875706	3L_1875706_SNP [dm3] 3L_1875706_SNP [dm6]	C	T	3.839e^-4	0.959	SYNONYMOUS_CODING dre4 DOWNSTREAM CG13937	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	8441816	3R_8441816_SNP [dm3] 3R_12616094_SNP [dm6]	G	A	3.839e^-4	0.959	INTERGENIC
X	5701408	X_5701408_SNP [dm3] X_5807375_SNP [dm6]	A	C	3.853e^-4	0.959	INTERGENIC
X	4075985	X_4075985_SNP [dm3] X_4181952_SNP [dm6]	G	A	3.855e^-4	0.959	INTRON Fas2
2R	12950788	2R_12950788_SNP [dm3] 2R_17063283_SNP [dm6]	A	C	3.856e^-4	0.959	NON_SYNONYMOUS_CODING CG6967 UPSTREAM CG8950	TF binding site mE1_TFBS_sens
2R	1499609	2R_1499609_SNP [dm3] 2R_5612104_SNP [dm6]	G	T	3.857e^-4	0.959	DOWNSTREAM CG17508 INTERGENIC
2L	19908963	2L_19908963_SNP [dm3] 2L_19908963_SNP [dm6]	C	T	3.857e^-4	0.959	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
3L	3750613	3L_3750613_SNP [dm3] 3L_3750613_SNP [dm6]	T	C	3.858e^-4	0.959	INTRON CG32264
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.859e^-4	0.959	INTRON jigr1
2L	6309349	2L_6309349_SNP [dm3] 2L_6309349_SNP [dm6]	A	T	3.868e^-4	0.959	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	3511568	3R_3511568_SNP [dm3] 3R_7685846_SNP [dm6]	G	A	3.872e^-4	0.959	INTRON Nlg1
2L	3297088	2L_3297088_SNP [dm3] 2L_3297088_SNP [dm6]	G	A	3.879e^-4	0.959	SYNONYMOUS_CODING CG9663
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	3.882e^-4	0.959	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	3617166	3R_3617166_SNP [dm3] 3R_7791444_SNP [dm6]	A	G	3.904e^-4	0.959	INTRON CG10086
3R	21683547	3R_21683547_SNP [dm3] 3R_25857825_SNP [dm6]	A	G	3.907e^-4	0.959	INTRON CG5890
2L	7447987	2L_7447987_SNP [dm3] 2L_7447987_SNP [dm6]	C	A	3.915e^-4	0.959	UTR_5_PRIME santa-maria INTRON santa-maria
2R	18972435	2R_18972435_SNP [dm3] 2R_23084912_SNP [dm6]	T	A	3.926e^-4	0.959	DOWNSTREAM CG9877 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	896189	3L_896189_SNP [dm3] 3L_896189_SNP [dm6]	T	C	3.927e^-4	0.959	SYNONYMOUS_CODING CG34056 DOWNSTREAM CG32479
3L	1296975	3L_1296975_SNP [dm3] 3L_1296975_SNP [dm6]	C	G	3.932e^-4	0.959	SYNONYMOUS_CODING Rabex-5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21340995	3R_21340995_SNP [dm3] 3R_25515273_SNP [dm6]	G	A	3.934e^-4	0.959	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	3.941e^-4	0.959	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	10036372	3L_10036372_SNP [dm3] 3L_10043272_SNP [dm6]	T	G	3.944e^-4	0.959	INTRON dpr6	TF binding site BDTNP1_TFBS_slp1
X	10237545	X_10237545_SNP [dm3] X_10343512_SNP [dm6]	A	G	3.951e^-4	0.959	INTRON CG43740
2L	9043147	2L_9043147_SNP [dm3] 2L_9043147_SNP [dm6]	C	A	3.963e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14416053	3L_14416053_DEL [dm3] 3L_14422953_DEL [dm6]	TT	C	3.970e^-4	0.959	INTRON bbg
X	16126955	X_16126955_SNP [dm3] X_16232922_SNP [dm6]	A	G	3.973e^-4	0.959	INTERGENIC
3R	17232859	3R_17232859_SNP [dm3] 3R_21407137_SNP [dm6]	G	T	3.986e^-4	0.959	UPSTREAM CheB93a DOWNSTREAM CG7907 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1
X	2397301	X_2397301_SNP [dm3] X_2503268_SNP [dm6]	A	C	4.002e^-4	0.959	INTRON trol
3R	24085077	3R_24085077_SNP [dm3] 3R_28259355_SNP [dm6]	G	A	4.003e^-4	0.959	INTERGENIC
3R	8470675	3R_8470675_SNP [dm3] 3R_12644953_SNP [dm6]	T	C	4.010e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3L	1294745	3L_1294745_SNP [dm3] 3L_1294745_SNP [dm6]	C	A	4.012e^-4	0.959	UTR_3_PRIME CG32333 DOWNSTREAM CG32333	TF binding site BDTNP1_TFBS_dl
2L	20241403	2L_20241403_SNP [dm3] 2L_20241403_SNP [dm6]	G	C	4.013e^-4	0.959	INTERGENIC
2R	17610541	2R_17610541_SNP [dm3] 2R_21723036_SNP [dm6]	C	T	4.013e^-4	0.959	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10916122	3R_10916122_SNP [dm3] 3R_15090400_SNP [dm6]	T	C	4.025e^-4	0.959	INTRON CG6966	TF binding site mE1_TFBS_Trl
3L	7428020	3L_7428020_SNP [dm3] 3L_7434920_SNP [dm6]	G	C	4.025e^-4	0.959	UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4066336	X_4066336_SNP [dm3] X_4172303_SNP [dm6]	G	C	4.027e^-4	0.959	INTRON Fas2
2L	13586957	2L_13586957_SNP [dm3] 2L_13586957_SNP [dm6]	G	A	4.039e^-4	0.959	INTRON kuz
2L	10014961	2L_10014961_SNP [dm3] 2L_10014961_SNP [dm6]	A	T	4.042e^-4	0.959	NON_SYNONYMOUS_CODING CG13131
3L	21994296	3L_21994296_SNP [dm3] 3L_22001196_SNP [dm6]	G	T	4.052e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12476875	2R_12476875_SNP [dm3] 2R_16589370_SNP [dm6]	C	T	4.055e^-4	0.959	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19269983	3L_19269983_SNP [dm3] 3L_19276883_SNP [dm6]	A	G	4.059e^-4	0.959	INTRON CG14086
2L	22036784	2L_22036784_SNP [dm3] 2L_22036784_SNP [dm6]	T	A	4.068e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19190890	3R_19190890_SNP [dm3] 3R_23365168_SNP [dm6]	T	C	4.068e^-4	0.959	INTERGENIC
X	13151581	X_13151581_SNP [dm3] X_13257548_SNP [dm6]	G	A	4.078e^-4	0.959	UTR_3_PRIME CG15742 UPSTREAM mew INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	4.081e^-4	0.959	INTRON klg	TF binding site mE1_TFBS_chinmo
2R	1489982	2R_1489982_SNP [dm3] 2R_5602477_SNP [dm6]	C	A	4.097e^-4	0.959	INTERGENIC
2R	19403808	2R_19403808_SNP [dm3] 2R_23516285_SNP [dm6]	T	C	4.102e^-4	0.959	INTERGENIC
3L	12058569	3L_12058569_SNP [dm3] 3L_12065469_SNP [dm6]	G	A	4.102e^-4	0.959	UPSTREAM rols INTERGENIC
3L	16189012	3L_16189012_SNP [dm3] 3L_16195912_SNP [dm6]	T	A	4.115e^-4	0.959	DOWNSTREAM CR45437 INTERGENIC
3L	2402123	3L_2402123_INS [dm3] 3L_2402123_INS [dm6]	C	TT	4.118e^-4	0.959	INTRON CG45186
2R	8549896	2R_8549896_SNP [dm3] 2R_12662391_SNP [dm6]	A	G	4.130e^-4	0.959	UTR_5_PRIME nemy UPSTREAM nemy INTRON nemy
2R	17985053	2R_17985053_SNP [dm3] 2R_22097548_SNP [dm6]	C	T	4.134e^-4	0.959	INTRON CG11073	TF binding site mE1_TFBS_HSA
X	9071436	X_9071436_SNP [dm3] X_9177403_SNP [dm6]	T	C	4.142e^-4	0.959	UTR_3_PRIME mei-P26
2L	9022152	2L_9022152_SNP [dm3] 2L_9022152_SNP [dm6]	C	A	4.149e^-4	0.959	INTERGENIC
2L	17284750	2L_17284750_SNP [dm3] 2L_17284750_SNP [dm6]	G	C	4.149e^-4	0.959	INTERGENIC
2L	9015309	2L_9015309_SNP [dm3] 2L_9015309_SNP [dm6]	G	T	4.157e^-4	0.959	INTERGENIC
2R	1488295	2R_1488295_SNP [dm3] 2R_5600790_SNP [dm6]	A	T	4.162e^-4	0.959	INTERGENIC	transposable element FlyBase
2L	12577690	2L_12577690_DEL [dm3] 2L_12577690_DEL [dm6]	AA	A	4.169e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5776849	2L_5776849_SNP [dm3] 2L_5776849_SNP [dm6]	A	G	4.170e^-4	0.959	INTRON CG9171
2R	20183896	2R_20183896_SNP [dm3] 2R_24296373_SNP [dm6]	G	A	4.172e^-4	0.959	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	10200714	X_10200714_SNP [dm3] X_10306681_SNP [dm6]	T	G	4.181e^-4	0.959	INTRON alpha-Man-I
2L	9816597	2L_9816597_SNP [dm3] 2L_9816597_SNP [dm6]	C	A	4.183e^-4	0.959	INTRON nAChRalpha6
3L	1298869	3L_1298869_SNP [dm3] 3L_1298869_SNP [dm6]	G	A	4.184e^-4	0.959	SYNONYMOUS_CODING scf UPSTREAM scf DOWNSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14081131	3R_14081131_SNP [dm3] 3R_18255409_SNP [dm6]	A	C	4.192e^-4	0.959	START_GAINED Ada2a & 1 other UTR_5_PRIME Ada2a & 1 other UPSTREAM moi & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	1788966	2L_1788966_DEL [dm3] 2L_1788966_DEL [dm6]	TGA	T	4.194e^-4	0.959	DOWNSTREAM Gr22d INTERGENIC
2R	4534577	2R_4534577_INS [dm3] 2R_8647072_INS [dm6]	T	TAATG	4.200e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7887144	X_7887144_SNP [dm3] X_7993111_SNP [dm6]	C	T	4.201e^-4	0.959	INTERGENIC
3L	1295569	3L_1295569_SNP [dm3] 3L_1295569_SNP [dm6]	G	A	4.206e^-4	0.959	UTR_3_PRIME CG32333 UPSTREAM Rabex-5	TF binding site BDTNP1_TFBS_dl
2L	3195912	2L_3195912_SNP [dm3] 2L_3195912_SNP [dm6]	G	C	4.207e^-4	0.959	INTRON CG34393
2L	16213453	2L_16213453_INS [dm3] 2L_16213453_INS [dm6]	T	TC	4.211e^-4	0.959	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	4.221e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15401004	2R_15401004_SNP [dm3] 2R_19513499_SNP [dm6]	T	C	4.221e^-4	0.959	NON_SYNONYMOUS_CODING Ir56d
2R	20589816	2R_20589816_SNP [dm3] 2R_24702293_SNP [dm6]	A	G	4.222e^-4	0.959	INTRON Mid1
3L	10342466	3L_10342466_SNP [dm3] 3L_10349366_SNP [dm6]	A	G	4.228e^-4	0.959	INTRON CR44327
2L	3533363	2L_3533363_SNP [dm3] 2L_3533363_SNP [dm6]	T	C	4.234e^-4	0.959	DOWNSTREAM Che-13 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13381488	3L_13381488_SNP [dm3] 3L_13388388_SNP [dm6]	T	A	4.237e^-4	0.959	UTR_3_PRIME Poc1 UPSTREAM CG10171	TF binding site mE1_TFBS_cad
2L	5569691	2L_5569691_SNP [dm3] 2L_5569691_SNP [dm6]	G	A	4.246e^-4	0.959	INTERGENIC
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	4.249e^-4	0.959	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	17647354	3R_17647354_DEL [dm3] 3R_21821632_DEL [dm6]	GTTCC	G	4.249e^-4	0.959	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18809124	2R_18809124_SNP [dm3] 2R_22921601_SNP [dm6]	G	T	4.267e^-4	0.959	NON_SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9336934	3L_9336934_SNP [dm3] 3L_9343834_SNP [dm6]	C	T	4.267e^-4	0.959	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	19231897	3R_19231897_SNP [dm3] 3R_23406175_SNP [dm6]	G	A	4.271e^-4	0.959	SYNONYMOUS_CODING Ir94e
3R	4426920	3R_4426920_SNP [dm3] 3R_8601198_SNP [dm6]	C	A	4.272e^-4	0.959	INTRON 5-HT2B
3R	15801238	3R_15801238_SNP [dm3] 3R_19975516_SNP [dm6]	T	C	4.283e^-4	0.959	INTRON Hs6st & 1 other
3R	15801243	3R_15801243_SNP [dm3] 3R_19975521_SNP [dm6]	T	C	4.283e^-4	0.959	INTRON Hs6st & 1 other
3L	14201275	3L_14201275_DEL [dm3] 3L_14208175_DEL [dm6]	AGACATA	A	4.291e^-4	0.959	INTRON nuf
3L	763480	3L_763480_SNP [dm3] 3L_763480_SNP [dm6]	T	C	4.293e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
X	7719457	X_7719457_SNP [dm3] X_7825424_SNP [dm6]	A	G	4.302e^-4	0.959	UPSTREAM CG1402 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12257057	2L_12257057_SNP [dm3] 2L_12257057_SNP [dm6]	C	A	4.306e^-4	0.959	INTRON aret
2R	12956290	2R_12956290_SNP [dm3] 2R_17068785_SNP [dm6]	G	A	4.312e^-4	0.959	SYNONYMOUS_CODING CG30460 INTRON CG30460	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16168511	2L_16168511_SNP [dm3] 2L_16168511_SNP [dm6]	G	A	4.315e^-4	0.959	UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
2R	13357176	2R_13357176_SNP [dm3] 2R_17469671_SNP [dm6]	C	T	4.322e^-4	0.959	UTR_5_PRIME qkr54B UPSTREAM qkr54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	15597146	2R_15597146_SNP [dm3] 2R_19709641_SNP [dm6]	G	A	4.329e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
3R	24582333	3R_24582333_SNP [dm3] 3R_28756611_SNP [dm6]	G	A	4.330e^-4	0.959	SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
3L	16972444	3L_16972444_SNP [dm3] 3L_16979344_SNP [dm6]	A	T	4.330e^-4	0.959	INTRON Exn
3R	18044819	3R_18044819_SNP [dm3] 3R_22219097_SNP [dm6]	T	A	4.334e^-4	0.959	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	3023509	3L_3023509_SNP [dm3] 3L_3023509_SNP [dm6]	T	A	4.336e^-4	0.959	DOWNSTREAM aly INTERGENIC
2L	6853913	2L_6853913_SNP [dm3] 2L_6853913_SNP [dm6]	A	T	4.339e^-4	0.959	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	4.344e^-4	0.959	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12044304	3R_12044304_SNP [dm3] 3R_16218582_SNP [dm6]	G	A	4.347e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14954607	2L_14954607_SNP [dm3] 2L_14954607_SNP [dm6]	G	C	4.348e^-4	0.959	INTRON CG42313
3R	8670365	3R_8670365_SNP [dm3] 3R_12844643_SNP [dm6]	A	G	4.348e^-4	0.959	INTRON beat-Va
2L	11930784	2L_11930784_SNP [dm3] 2L_11930784_SNP [dm6]	C	T	4.353e^-4	0.959	INTERGENIC
2R	4940828	2R_4940828_SNP [dm3] 2R_9053323_SNP [dm6]	G	A	4.361e^-4	0.959	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21146864	3R_21146864_SNP [dm3] 3R_25321142_SNP [dm6]	G	A	4.364e^-4	0.959	UTR_3_PRIME CG10562
2L	5569744	2L_5569744_SNP [dm3] 2L_5569744_SNP [dm6]	C	A	4.366e^-4	0.959	INTERGENIC
3L	10287102	3L_10287102_SNP [dm3] 3L_10294002_SNP [dm6]	G	A	4.373e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19886611	2L_19886611_INS [dm3] 2L_19886611_INS [dm6]	G	GCTTCGG	4.392e^-4	0.959	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_inv
X	20407139	X_20407139_SNP [dm3] X_20536112_SNP [dm6]	A	T	4.408e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7462501	2R_7462501_SNP [dm3] 2R_11574996_SNP [dm6]	A	G	4.414e^-4	0.959	INTERGENIC
2L	1475133	2L_1475133_SNP [dm3] 2L_1475133_SNP [dm6]	C	T	4.422e^-4	0.959	INTERGENIC
2L	7279107	2L_7279107_SNP [dm3] 2L_7279107_SNP [dm6]	G	A	4.425e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_sens
2R	1438916	2R_1438916_INS [dm3] 2R_5551411_INS [dm6]	A	AAGATT	4.425e^-4	0.959	INTERGENIC	transposable element FlyBase
2R	1497947	2R_1497947_SNP [dm3] 2R_5610442_SNP [dm6]	T	C	4.441e^-4	0.959	DOWNSTREAM CG17508 INTRON CG17508	transposable element FlyBase
3L	7950251	3L_7950251_SNP [dm3] 3L_7957151_SNP [dm6]	T	G	4.451e^-4	0.959	INTERGENIC
2R	4534579	2R_4534579_INS [dm3] 2R_8647074_INS [dm6]	T	TGAGAAGA	4.467e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9560410	2R_9560410_DEL [dm3] 2R_13672905_DEL [dm6]	ACGCAAA	TG	4.479e^-4	0.959	UPSTREAM CR45031 INTRON fas
X	7102363	X_7102363_SNP [dm3] X_7208330_SNP [dm6]	C	G	4.482e^-4	0.959	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
2R	10071129	2R_10071129_SNP [dm3] 2R_14183624_SNP [dm6]	T	C	4.483e^-4	0.959	DOWNSTREAM cg INTERGENIC
3R	17762960	3R_17762960_SNP [dm3] 3R_21937238_SNP [dm6]	A	C	4.484e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5701676	X_5701676_SNP [dm3] X_5807643_SNP [dm6]	T	C	4.502e^-4	0.959	INTERGENIC
2R	15597192	2R_15597192_SNP [dm3] 2R_19709687_SNP [dm6]	C	A	4.505e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs
2L	15608991	2L_15608991_SNP [dm3] 2L_15608991_SNP [dm6]	A	T	4.506e^-4	0.959	INTERGENIC
X	10415731	X_10415731_SNP [dm3] X_10521698_SNP [dm6]	G	A	4.506e^-4	0.959	INTRON spri
2L	9196254	2L_9196254_SNP [dm3] 2L_9196254_SNP [dm6]	G	A	4.508e^-4	0.959	INTRON tai
3R	3571036	3R_3571036_SNP [dm3] 3R_7745314_SNP [dm6]	C	G	4.513e^-4	0.959	INTERGENIC
3L	10052904	3L_10052904_SNP [dm3] 3L_10059804_SNP [dm6]	C	G	4.513e^-4	0.959	INTRON dpr6
3R	17169418	3R_17169418_SNP [dm3] 3R_21343696_SNP [dm6]	T	C	4.522e^-4	0.959	INTRON CG16791
3L	17230888	3L_17230888_SNP [dm3] 3L_17237788_SNP [dm6]	A	T	4.525e^-4	0.959	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15196383	2R_15196383_SNP [dm3] 2R_19308878_SNP [dm6]	G	C	4.535e^-4	0.959	INTRON EndoB
X	13351592	X_13351592_SNP [dm3] X_13457559_SNP [dm6]	T	G	4.538e^-4	0.959	INTRON Neto & 1 other
2R	11737079	2R_11737079_SNP [dm3] 2R_15849574_SNP [dm6]	C	T	4.539e^-4	0.959	UTR_5_PRIME tun
3R	26413630	3R_26413630_SNP [dm3] 3R_30587908_SNP [dm6]	A	C	4.543e^-4	0.959	UPSTREAM CG9717 INTERGENIC
3L	7898415	3L_7898415_SNP [dm3] 3L_7905315_SNP [dm6]	A	G	4.545e^-4	0.959	INTRON pbl
3L	19446198	3L_19446198_SNP [dm3] 3L_19453098_SNP [dm6]	G	T	4.547e^-4	0.959	INTERGENIC
2L	19929144	2L_19929144_SNP [dm3] 2L_19929144_SNP [dm6]	T	C	4.554e^-4	0.959	INTRON sick
2R	7889432	2R_7889432_SNP [dm3] 2R_12001927_SNP [dm6]	T	C	4.558e^-4	0.959	UTR_3_PRIME otk
3R	25659406	3R_25659406_DEL [dm3] 3R_29833684_DEL [dm6]	ATTA	A	4.559e^-4	0.959	UPSTREAM Atg16 INTRON Atg16
3L	8833853	3L_8833853_SNP [dm3] 3L_8840753_SNP [dm6]	T	C	4.565e^-4	0.959	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7717304	3L_7717304_SNP [dm3] 3L_7724204_SNP [dm6]	G	A	4.565e^-4	0.959	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19970248	2L_19970248_SNP [dm3] 2L_19970248_SNP [dm6]	A	G	4.573e^-4	0.959	UTR_3_PRIME CG43861 INTRON CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16897062	X_16897062_SNP [dm3] X_17003029_SNP [dm6]	T	C	4.578e^-4	0.959	INTRON CG45002
X	17271787	X_17271787_SNP [dm3] X_17377754_SNP [dm6]	G	A	4.592e^-4	0.959	DOWNSTREAM CR43491 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	4.620e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	4.624e^-4	0.959	INTRON fz
2R	15132002	2R_15132002_SNP [dm3] 2R_19244497_SNP [dm6]	A	G	4.626e^-4	0.959	DOWNSTREAM cora INTERGENIC
3R	26963999	3R_26963999_SNP [dm3] 3R_31138277_SNP [dm6]	G	A	4.630e^-4	0.959	INTRON Gycbeta100B
X	12365365	X_12365365_SNP [dm3] X_12471332_SNP [dm6]	A	T	4.638e^-4	0.959	UPSTREAM CG42258 INTRON CG42258	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14479641	3L_14479641_SNP [dm3] 3L_14486541_SNP [dm6]	A	T	4.642e^-4	0.959	INTRON bbg
3R	26009157	3R_26009157_SNP [dm3] 3R_30183435_SNP [dm6]	A	T	4.646e^-4	0.959	DOWNSTREAM CR44262 INTERGENIC
2L	6853914	2L_6853914_SNP [dm3] 2L_6853914_SNP [dm6]	T	C	4.649e^-4	0.959	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	4.650e^-4	0.959	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	17104662	2L_17104662_SNP [dm3] 2L_17104662_SNP [dm6]	T	A	4.654e^-4	0.959	UPSTREAM CR45448 INTERGENIC
2R	485532	2R_485532_DEL [dm3] 2R_4598027_DEL [dm6]	AA	A	4.657e^-4	0.959	INTRON p120ctn
X	16902516	X_16902516_SNP [dm3] X_17008483_SNP [dm6]	A	G	4.661e^-4	0.959	INTRON CG45002
2L	12577700	2L_12577700_SNP [dm3] 2L_12577700_SNP [dm6]	T	C	4.662e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA
X	16758873	X_16758873_SNP [dm3] X_16864840_SNP [dm6]	T	C	4.670e^-4	0.959	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	26937266	3R_26937266_SNP [dm3] 3R_31111544_SNP [dm6]	A	G	4.671e^-4	0.959	INTERGENIC
2R	18659045	2R_18659045_SNP [dm3] 2R_22771540_SNP [dm6]	C	A	4.687e^-4	0.959	INTRON CG42260	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19911969	2L_19911969_SNP [dm3] 2L_19911969_SNP [dm6]	C	G	4.697e^-4	0.959	NON_SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12357211	3L_12357211_SNP [dm3] 3L_12364111_SNP [dm6]	T	C	4.703e^-4	0.959	INTERGENIC
X	2385838	X_2385838_SNP [dm3] X_2491805_SNP [dm6]	T	A	4.707e^-4	0.959	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	4.716e^-4	0.959	INTRON sick	TF binding site mE1_TFBS_cad
X	10238835	X_10238835_SNP [dm3] X_10344802_SNP [dm6]	C	A	4.717e^-4	0.959	INTRON CG43740	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	8059361	3L_8059361_SNP [dm3] 3L_8066261_SNP [dm6]	A	G	4.720e^-4	0.959	UPSTREAM tRNA:CR32361 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	4.728e^-4	0.959	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9449377	X_9449377_SNP [dm3] X_9555344_SNP [dm6]	C	T	4.729e^-4	0.959	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19922021	2L_19922021_SNP [dm3] 2L_19922021_SNP [dm6]	G	C	4.737e^-4	0.959	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
X	11231636	X_11231636_SNP [dm3] X_11337603_SNP [dm6]	C	A	4.738e^-4	0.959	SYNONYMOUS_CODING Kap3
2L	8173266	2L_8173266_SNP [dm3] 2L_8173266_SNP [dm6]	A	C	4.742e^-4	0.959	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	4.744e^-4	0.959	INTRON fz
3L	9691202	3L_9691202_SNP [dm3] 3L_9698102_SNP [dm6]	A	G	4.749e^-4	0.959	UPSTREAM UbcD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	10924838	3L_10924838_SNP [dm3] 3L_10931738_SNP [dm6]	A	G	4.751e^-4	0.959	INTERGENIC
3R	6909248	3R_6909248_DEL [dm3] 3R_11083526_DEL [dm6]	ACG	A	4.757e^-4	0.959	DOWNSTREAM CR44940 INTERGENIC
3L	3023532	3L_3023532_SNP [dm3] 3L_3023532_SNP [dm6]	C	T	4.762e^-4	0.959	DOWNSTREAM aly INTERGENIC
3R	18470599	3R_18470599_SNP [dm3] 3R_22644877_SNP [dm6]	T	A	4.762e^-4	0.959	INTRON CG45058
X	13173411	X_13173411_DEL [dm3] X_13279378_DEL [dm6]	AACA	A	4.764e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26960697	3R_26960697_SNP [dm3] 3R_31134975_SNP [dm6]	T	C	4.770e^-4	0.959	INTRON Gycbeta100B
3L	2867646	3L_2867646_SNP [dm3] 3L_2867646_SNP [dm6]	C	T	4.782e^-4	0.959	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10200695	X_10200695_SNP [dm3] X_10306662_SNP [dm6]	T	A	4.785e^-4	0.959	INTRON alpha-Man-I
X	18927353	X_18927353_DEL [dm3] X_19033320_DEL [dm6]	GGTGCG	G	4.798e^-4	0.959	INTERGENIC
X	2403033	X_2403033_SNP [dm3] X_2509000_SNP [dm6]	G	A	4.798e^-4	0.959	INTRON trol
2R	18833923	2R_18833923_SNP [dm3] 2R_22946400_SNP [dm6]	C	G	4.801e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	15542679	X_15542679_SNP [dm3] X_15648646_SNP [dm6]	T	G	4.806e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	3511273	3R_3511273_SNP [dm3] 3R_7685551_SNP [dm6]	T	G	4.810e^-4	0.959	INTRON Nlg1
2L	20928316	2L_20928316_SNP [dm3] 2L_20928316_SNP [dm6]	T	G	4.812e^-4	0.959	UPSTREAM CR33319 & 1 other INTERGENIC	transposable element FlyBase
2L	17104676	2L_17104676_SNP [dm3] 2L_17104676_SNP [dm6]	C	A	4.821e^-4	0.959	UPSTREAM CR45448 INTERGENIC
2R	19175252	2R_19175252_SNP [dm3] 2R_23287729_SNP [dm6]	T	C	4.825e^-4	0.959	INTERGENIC
2R	15421935	2R_15421935_SNP [dm3] 2R_19534430_SNP [dm6]	A	C	4.828e^-4	0.959	INTRON sm
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	4.834e^-4	0.959	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	10310694	2R_10310694_SNP [dm3] 2R_14423189_SNP [dm6]	T	C	4.848e^-4	0.959	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19509774	2R_19509774_SNP [dm3] 2R_23622251_SNP [dm6]	C	T	4.850e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13022490	2L_13022490_INS [dm3] 2L_13022490_INS [dm6]	T	TT	4.861e^-4	0.959	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
3R	19302815	3R_19302815_INS [dm3] 3R_23477093_INS [dm6]	AAA	GTTTCGT	4.862e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18240605	3L_18240605_SNP [dm3] 3L_18247505_SNP [dm6]	G	T	4.864e^-4	0.959	INTERGENIC
3L	15022643	3L_15022643_SNP [dm3] 3L_15029543_SNP [dm6]	G	T	4.865e^-4	0.959	INTRON Sytbeta
2L	17304331	2L_17304331_SNP [dm3] 2L_17304331_SNP [dm6]	G	A	4.870e^-4	0.959	INTERGENIC
3L	19638855	3L_19638855_DEL [dm3] 3L_19645755_DEL [dm6]	CC	C	4.888e^-4	0.959	INTERGENIC
3L	14517375	3L_14517375_SNP [dm3] 3L_14524275_SNP [dm6]	A	T	4.889e^-4	0.959	INTRON bbg
3L	3871895	3L_3871895_SNP [dm3] 3L_3871895_SNP [dm6]	T	C	4.897e^-4	0.959	INTERGENIC
X	2933084	X_2933084_INS [dm3] X_3039051_INS [dm6]	G	GTTG	4.905e^-4	0.959	INTRON kirre
X	2789931	X_2789931_SNP [dm3] X_2895898_SNP [dm6]	A	C	4.919e^-4	0.959	INTRON kirre
3L	10639931	3L_10639931_SNP [dm3] 3L_10646831_SNP [dm6]	G	A	4.936e^-4	0.959	INTRON CG32066
X	17939905	X_17939905_SNP [dm3] X_18045872_SNP [dm6]	A	G	4.938e^-4	0.959	SYNONYMOUS_CODING CG15373 INTRON Sh
3L	12577744	3L_12577744_DEL [dm3] 3L_12584644_DEL [dm6]	TGGACGTGCGTTTCCT...	T	4.938e^-4	0.959	INTRON ara
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	4.941e^-4	0.959	INTERGENIC
2L	3759193	2L_3759193_SNP [dm3] 2L_3759193_SNP [dm6]	A	G	4.945e^-4	0.959	UTR_5_PRIME CG43707 UPSTREAM CG43707 INTRON CG43707
2L	13022383	2L_13022383_SNP [dm3] 2L_13022383_SNP [dm6]	C	T	4.954e^-4	0.959	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
3L	2703614	3L_2703614_SNP [dm3] 3L_2703614_SNP [dm6]	G	A	4.959e^-4	0.959	INTRON Fife
2R	10538188	2R_10538188_SNP [dm3] 2R_14650683_SNP [dm6]	A	T	4.973e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13022442	2L_13022442_SNP [dm3] 2L_13022442_SNP [dm6]	A	C	4.980e^-4	0.959	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
2L	3058741	2L_3058741_SNP [dm3] 2L_3058741_SNP [dm6]	T	C	4.993e^-4	0.959	INTRON CG3523	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10200696	X_10200696_SNP [dm3] X_10306663_SNP [dm6]	A	C	4.993e^-4	0.959	INTRON alpha-Man-I
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	4.999e^-4	0.959	INTERGENIC
3R	26697883	3R_26697883_SNP [dm3] 3R_30872161_SNP [dm6]	C	A	5.011e^-4	0.959	SYNONYMOUS_CODING CG15545	TF binding site mE1_TFBS_cad
2L	19870136	2L_19870136_SNP [dm3] 2L_19870136_SNP [dm6]	A	T	5.028e^-4	0.959	INTRON sick	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9019162	2L_9019162_SNP [dm3] 2L_9019162_SNP [dm6]	A	C	5.028e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16803794	2R_16803794_INS [dm3] 2R_20916289_INS [dm6]	A	AAA	5.031e^-4	0.959	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19697001	2L_19697001_SNP [dm3] 2L_19697001_SNP [dm6]	C	T	5.032e^-4	0.959	INTRON Lar	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18484366	3R_18484366_SNP [dm3] 3R_22658644_SNP [dm6]	T	C	5.053e^-4	0.959	INTRON CG45058	TF binding site mE1_TFBS_chinmo
X	15295253	X_15295253_SNP [dm3] X_15401220_SNP [dm6]	G	T	5.058e^-4	0.959	INTRON Cngl	TF binding site BDTNP1_TFBS_dl
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	5.068e^-4	0.959	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2L	6712017	2L_6712017_SNP [dm3] 2L_6712017_SNP [dm6]	G	A	5.075e^-4	0.959	UTR_3_PRIME AkhR INTRON AkhR
3R	26995431	3R_26995431_SNP [dm3] 3R_31169709_SNP [dm6]	T	C	5.081e^-4	0.959	UPSTREAM stops INTRON Gycbeta100B
3L	13564963	3L_13564963_SNP [dm3] 3L_13571863_SNP [dm6]	T	G	5.085e^-4	0.959	INTRON bru-3
3L	14400919	3L_14400919_SNP [dm3] 3L_14407819_SNP [dm6]	A	G	5.085e^-4	0.959	INTRON stwl
2R	4158758	2R_4158758_SNP [dm3] 2R_8271253_SNP [dm6]	G	A	5.090e^-4	0.959	INTERGENIC
2R	9937868	2R_9937868_SNP [dm3] 2R_14050363_SNP [dm6]	T	G	5.096e^-4	0.959	INTRON mam
2L	4130635	2L_4130635_SNP [dm3] 2L_4130635_SNP [dm6]	T	G	5.105e^-4	0.959	INTERGENIC
3R	19356813	3R_19356813_SNP [dm3] 3R_23531091_SNP [dm6]	A	T	5.112e^-4	0.959	UPSTREAM CG10175 INTERGENIC
2R	17739638	2R_17739638_SNP [dm3] 2R_21852133_SNP [dm6]	T	C	5.114e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_cad
3L	23205571	3L_23205571_SNP [dm3] 3L_23212471_SNP [dm6]	G	T	5.118e^-4	0.959	INTRON nAChRalpha4	transposable element FlyBase
2L	14417942	2L_14417942_INS [dm3] 2L_14417942_INS [dm6]	T	TAGCT	5.149e^-4	0.959	UPSTREAM Pburs INTERGENIC
2R	15831874	2R_15831874_SNP [dm3] 2R_19944369_SNP [dm6]	C	T	5.161e^-4	0.959	SYNONYMOUS_CODING CG43195 DOWNSTREAM CG42690
3R	17374637	3R_17374637_SNP [dm3] 3R_21548915_SNP [dm6]	T	G	5.170e^-4	0.959	NON_SYNONYMOUS_CODING slou UTR_3_PRIME slou	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	12836332	3L_12836332_SNP [dm3] 3L_12843232_SNP [dm6]	A	T	5.172e^-4	0.959	UPSTREAM CG10960 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14792764	X_14792764_SNP [dm3] X_14898731_SNP [dm6]	A	G	5.177e^-4	0.959	INTRON Flo2
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	5.178e^-4	0.959	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3R	5565213	3R_5565213_SNP [dm3] 3R_9739491_SNP [dm6]	T	C	5.184e^-4	0.959	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21186166	3R_21186166_SNP [dm3] 3R_25360444_SNP [dm6]	G	A	5.186e^-4	0.959	DOWNSTREAM CG11913 INTRON Fur1	TF binding site mE1_TFBS_inv
3R	25036733	3R_25036733_SNP [dm3] 3R_29211011_SNP [dm6]	C	G	5.188e^-4	0.959	INTERGENIC
3L	19473120	3L_19473120_SNP [dm3] 3L_19480020_SNP [dm6]	A	C	5.191e^-4	0.959	INTERGENIC
2L	1952013	2L_1952013_SNP [dm3] 2L_1952013_SNP [dm6]	G	C	5.192e^-4	0.959	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19354200	3L_19354200_SNP [dm3] 3L_19361100_SNP [dm6]	G	T	5.193e^-4	0.959	INTRON CG32206
3L	13469598	3L_13469598_SNP [dm3] 3L_13476498_SNP [dm6]	A	T	5.198e^-4	0.959	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	5.204e^-4	0.959	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	5.210e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	19082936	2R_19082936_SNP [dm3] 2R_23195413_SNP [dm6]	A	G	5.211e^-4	0.959	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9465442	X_9465442_SNP [dm3] X_9571409_SNP [dm6]	C	A	5.222e^-4	0.959	UPSTREAM Cubn DOWNSTREAM CG32699 INTERGENIC
3L	1792795	3L_1792795_SNP [dm3] 3L_1792795_SNP [dm6]	A	T	5.240e^-4	0.959	SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3932680	2L_3932680_SNP [dm3] 2L_3932680_SNP [dm6]	T	G	5.246e^-4	0.959	INTRON fred
3L	14454570	3L_14454570_DEL [dm3] 3L_14461470_DEL [dm6]	TAAG	T	5.261e^-4	0.959	INTRON bbg
2R	11030632	2R_11030632_SNP [dm3] 2R_15143127_SNP [dm6]	T	C	5.273e^-4	0.959	SYNONYMOUS_CODING chn UTR_3_PRIME chn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17943476	3R_17943476_SNP [dm3] 3R_22117754_SNP [dm6]	G	T	5.279e^-4	0.959	NON_SYNONYMOUS_CODING Ir94c UPSTREAM Ir94b
2R	7823341	2R_7823341_SNP [dm3] 2R_11935836_SNP [dm6]	T	A	5.281e^-4	0.959	INTERGENIC
2L	4635484	2L_4635484_SNP [dm3] 2L_4635484_SNP [dm6]	G	A	5.283e^-4	0.959	INTERGENIC
2L	4635499	2L_4635499_INS [dm3] 2L_4635499_INS [dm6]	A	AC	5.283e^-4	0.959	INTERGENIC
3R	26180982	3R_26180982_SNP [dm3] 3R_30355260_SNP [dm6]	G	T	5.285e^-4	0.959	INTRON hdc
4	322609	4_322609_SNP [dm3] 4_301983_SNP [dm6]	G	C	5.289e^-4	0.959	INTRON Syt7
3L	9691167	3L_9691167_SNP [dm3] 3L_9698067_SNP [dm6]	G	A	5.289e^-4	0.959	UPSTREAM UbcD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	5.311e^-4	0.959	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9535786	3L_9535786_SNP [dm3] 3L_9542686_SNP [dm6]	A	G	5.314e^-4	0.959	SYNONYMOUS_CODING Ir67a
2L	15949285	2L_15949285_SNP [dm3] 2L_15949285_SNP [dm6]	G	A	5.318e^-4	0.959	INTRON beat-Ib
2L	20114288	2L_20114288_SNP [dm3] 2L_20114288_SNP [dm6]	G	A	5.323e^-4	0.959	INTERGENIC
3R	25982923	3R_25982923_SNP [dm3] 3R_30157201_SNP [dm6]	G	T	5.326e^-4	0.959	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18393429	3R_18393429_SNP [dm3] 3R_22567707_SNP [dm6]	A	G	5.334e^-4	0.959	INTERGENIC
X	12699587	X_12699587_SNP [dm3] X_12805554_SNP [dm6]	C	T	5.346e^-4	0.959	INTRON Pde9	TF binding site BDTNP1_TFBS_twi
2L	3893271	2L_3893271_SNP [dm3] 2L_3893271_SNP [dm6]	C	A	5.351e^-4	0.959	NON_SYNONYMOUS_CODING capu
3L	2703732	3L_2703732_SNP [dm3] 3L_2703732_SNP [dm6]	G	T	5.351e^-4	0.959	INTRON Fife
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	5.354e^-4	0.959	INTERGENIC
2R	9559975	2R_9559975_SNP [dm3] 2R_13672470_SNP [dm6]	G	C	5.360e^-4	0.959	UPSTREAM CR45031 DOWNSTREAM CG18368 INTRON fas
3R	1586113	3R_1586113_SNP [dm3] 3R_5760391_SNP [dm6]	T	C	5.364e^-4	0.959	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3R	25982969	3R_25982969_SNP [dm3] 3R_30157247_SNP [dm6]	A	G	5.365e^-4	0.959	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17956130	X_17956130_SNP [dm3] X_18062097_SNP [dm6]	A	T	5.374e^-4	0.959	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	20315765	2L_20315765_SNP [dm3] 2L_20315765_SNP [dm6]	A	G	5.378e^-4	0.959	DOWNSTREAM CR43606 INTRON spir
2R	17423239	2R_17423239_SNP [dm3] 2R_21535734_SNP [dm6]	T	A	5.383e^-4	0.959	UTR_3_PRIME CG30286 INTRON Egfr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	11409169	3R_11409169_SNP [dm3] 3R_15583447_SNP [dm6]	C	T	5.384e^-4	0.959	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9071460	X_9071460_SNP [dm3] X_9177427_SNP [dm6]	C	G	5.390e^-4	0.959	UTR_3_PRIME mei-P26
X	7303913	X_7303913_SNP [dm3] X_7409880_SNP [dm6]	C	A	5.392e^-4	0.959	INTERGENIC
2L	10385734	2L_10385734_SNP [dm3] 2L_10385734_SNP [dm6]	T	C	5.416e^-4	0.959	UPSTREAM mRpS7 INTRON cdc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15636850	3R_15636850_SNP [dm3] 3R_19811128_SNP [dm6]	A	G	5.419e^-4	0.959	INTRON bnl
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	5.438e^-4	0.959	INTRON Sema-2b
3L	15617579	3L_15617579_SNP [dm3] 3L_15624479_SNP [dm6]	G	A	5.439e^-4	0.959	DOWNSTREAM CG7372 INTRON comm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	20241435	2L_20241435_SNP [dm3] 2L_20241435_SNP [dm6]	A	G	5.442e^-4	0.959	INTERGENIC
2R	12447397	2R_12447397_SNP [dm3] 2R_16559892_SNP [dm6]	A	G	5.445e^-4	0.959	SYNONYMOUS_CODING DAT
X	16471760	X_16471760_SNP [dm3] X_16577727_SNP [dm6]	T	G	5.446e^-4	0.959	INTRON CanA-14F
4	359830	4_359830_SNP [dm3] 4_339204_SNP [dm6]	T	C	5.453e^-4	0.959	INTRON PMCA	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12056660	3L_12056660_SNP [dm3] 3L_12063560_SNP [dm6]	T	C	5.458e^-4	0.959	INTRON rols	TF binding site mE1_TFBS_HSA
2L	12040845	2L_12040845_SNP [dm3] 2L_12040845_SNP [dm6]	C	A	5.467e^-4	0.959	UPSTREAM CG6766 DOWNSTREAM CG6785 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22219018	3R_22219018_SNP [dm3] 3R_26393296_SNP [dm6]	T	G	5.468e^-4	0.959	INTERGENIC
2R	13355493	2R_13355493_SNP [dm3] 2R_17467988_SNP [dm6]	C	T	5.473e^-4	0.959	SYNONYMOUS_CODING Tes	TF binding site mE1_TFBS_sens
3R	17353856	3R_17353856_SNP [dm3] 3R_21528134_SNP [dm6]	C	T	5.485e^-4	0.959	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
2L	8346379	2L_8346379_SNP [dm3] 2L_8346379_SNP [dm6]	G	A	5.503e^-4	0.959	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4635487	2L_4635487_SNP [dm3] 2L_4635487_SNP [dm6]	A	G	5.508e^-4	0.959	INTERGENIC
2L	9027985	2L_9027985_SNP [dm3] 2L_9027985_SNP [dm6]	G	T	5.509e^-4	0.959	INTRON CG9582 & 1 other
3R	5605808	3R_5605808_SNP [dm3] 3R_9780086_SNP [dm6]	T	C	5.512e^-4	0.959	UTR_5_PRIME CG12947 DOWNSTREAM RpS29 EXON CR31514
3R	8429011	3R_8429011_SNP [dm3] 3R_12603289_SNP [dm6]	A	G	5.523e^-4	0.959	INTERGENIC
3R	22300815	3R_22300815_SNP [dm3] 3R_26475093_SNP [dm6]	T	C	5.524e^-4	0.959	SYNONYMOUS_CODING plum	TF binding site mE1_TFBS_HSA
X	20409352	X_20409352_SNP [dm3] X_20538325_SNP [dm6]	C	T	5.524e^-4	0.959	UPSTREAM RunxB INTERGENIC
3L	14517389	3L_14517389_SNP [dm3] 3L_14524289_SNP [dm6]	C	T	5.525e^-4	0.959	INTRON bbg
3R	26361338	3R_26361338_SNP [dm3] 3R_30535616_SNP [dm6]	C	A	5.537e^-4	0.959	INTRON tmod
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	5.544e^-4	0.959	UTR_3_PRIME fas
3L	16873694	3L_16873694_SNP [dm3] 3L_16880594_SNP [dm6]	C	G	5.548e^-4	0.959	INTRON Lmpt
2R	16197942	2R_16197942_SNP [dm3] 2R_20310437_SNP [dm6]	G	A	5.548e^-4	0.959	SYNONYMOUS_CODING CG13868	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	13173679	X_13173679_SNP [dm3] X_13279646_SNP [dm6]	A	G	5.549e^-4	0.959	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3R	18769870	3R_18769870_SNP [dm3] 3R_22944148_SNP [dm6]	C	T	5.558e^-4	0.959	INTRON klg
2R	17527994	2R_17527994_SNP [dm3] 2R_21640489_SNP [dm6]	G	A	5.558e^-4	0.959	INTERGENIC
2R	20691135	2R_20691135_DEL [dm3] 2R_24803612_DEL [dm6]	CC	C	5.560e^-4	0.959	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.396e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.05876

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	5.947	0.0511

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1726 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	3.928e^-6	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	4.814e^-6	0.989	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	21895236	X_21895236_SNP [dm3] X_22493400_SNP [dm6]	T	A	4.908e^-6	0.989	INTRON l_1_G0196
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	5.345e^-6	0.989	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	7447883	2L_7447883_SNP [dm3] 2L_7447883_SNP [dm6]	T	A	9.263e^-6	0.989	UTR_5_PRIME santa-maria INTRON santa-maria
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	9.748e^-6	0.989	INTRON spri
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	9.984e^-6	0.989	INTRON Rbp6
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	1.047e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	1.051e^-5	0.989	INTRON spir
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	1.134e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3007835	3L_3007835_SNP [dm3] 3L_3007835_SNP [dm6]	C	T	1.311e^-5	0.989	INTRON FMRFaR
2R	1496810	2R_1496810_SNP [dm3] 2R_5609305_SNP [dm6]	A	T	1.329e^-5	0.989	SYNONYMOUS_CODING CG17508
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.416e^-5	0.989	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	1487909	2R_1487909_SNP [dm3] 2R_5600404_SNP [dm6]	G	A	1.513e^-5	0.989	INTERGENIC
2L	7447884	2L_7447884_SNP [dm3] 2L_7447884_SNP [dm6]	A	T	1.516e^-5	0.989	UTR_5_PRIME santa-maria INTRON santa-maria
3L	23075298	3L_23075298_DEL [dm3] 3L_23082198_DEL [dm6]	TTTTA	T	1.518e^-5	0.989	INTERGENIC
X	7887144	X_7887144_SNP [dm3] X_7993111_SNP [dm6]	C	T	1.538e^-5	0.989	INTERGENIC
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.579e^-5	0.989	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.579e^-5	0.989	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.712e^-5	0.989	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.730e^-5	0.989	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	1.762e^-5	0.989	INTRON sm
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	1.802e^-5	0.989	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	1.844e^-5	0.989	INTRON spir & 1 other
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	1.897e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19913638	2L_19913638_INS [dm3] 2L_19913638_INS [dm6]	T	TT	1.942e^-5	0.989	UPSTREAM Victoria INTRON sick
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	2.031e^-5	0.989	DOWNSTREAM CG33460 INTRON CG33461
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	2.063e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	2.075e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10265934	3L_10265934_SNP [dm3] 3L_10272834_SNP [dm6]	G	T	2.091e^-5	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	1489406	2R_1489406_SNP [dm3] 2R_5601901_SNP [dm6]	T	G	2.221e^-5	0.989	INTERGENIC
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	2.245e^-5	0.989	UTR_3_PRIME CG10562
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	2.253e^-5	0.989	INTRON rgn
2L	3977876	2L_3977876_SNP [dm3] 2L_3977876_SNP [dm6]	C	T	2.288e^-5	0.989	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11469133	2R_11469133_SNP [dm3] 2R_15581628_SNP [dm6]	G	C	2.557e^-5	0.989	INTERGENIC
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	2.655e^-5	0.989	INTRON FMRFaR
2L	19913640	2L_19913640_SNP [dm3] 2L_19913640_SNP [dm6]	T	G	2.800e^-5	0.989	UPSTREAM Victoria INTRON sick
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	2.918e^-5	0.989	INTRON sm
2R	15444018	2R_15444018_SNP [dm3] 2R_19556513_SNP [dm6]	G	A	3.137e^-5	0.989	INTRON sm
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	3.148e^-5	0.989	DOWNSTREAM CG3982 INTRON CG3967
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	3.364e^-5	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	19910552	2L_19910552_SNP [dm3] 2L_19910552_SNP [dm6]	T	A	3.444e^-5	0.989	DOWNSTREAM CR43097 INTRON sick
3L	13320524	3L_13320524_SNP [dm3] 3L_13327424_SNP [dm6]	G	T	3.483e^-5	0.989	INTERGENIC
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	3.514e^-5	0.989	INTRON spg
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	3.571e^-5	0.989	INTRON fzy	TF binding site mE1_TFBS_sens
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	3.653e^-5	0.989	INTRON Eip63E
X	7889598	X_7889598_SNP [dm3] X_7995565_SNP [dm6]	A	G	3.767e^-5	0.989	UPSTREAM Tbh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23075306	3L_23075306_DEL [dm3] 3L_23082206_DEL [dm6]	CCATGCTGACCCGAGAACTT...	C	3.884e^-5	0.989	INTERGENIC
3L	10266528	3L_10266528_SNP [dm3] 3L_10273428_SNP [dm6]	G	A	4.032e^-5	0.989	SYNONYMOUS_CODING Or67d
2R	7402091	2R_7402091_SNP [dm3] 2R_11514586_SNP [dm6]	C	T	4.070e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	4.135e^-5	0.989	INTRON spir & 1 other
2R	15444103	2R_15444103_INS [dm3] 2R_19556598_INS [dm6]	C	CCT	4.175e^-5	0.989	INTRON sm
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	4.199e^-5	0.989	INTRON FMRFaR
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	4.252e^-5	0.989	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
3R	8435592	3R_8435592_SNP [dm3] 3R_12609870_SNP [dm6]	A	T	4.276e^-5	0.989	INTERGENIC
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	4.278e^-5	0.989	INTRON spg
2L	10197395	2L_10197395_SNP [dm3] 2L_10197395_SNP [dm6]	A	G	4.488e^-5	0.989	INTRON Sur	regulatory region REDfly_CRMs
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	4.494e^-5	0.989	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
2R	9560410	2R_9560410_DEL [dm3] 2R_13672905_DEL [dm6]	ACGCAAA	TG	4.713e^-5	0.989	UPSTREAM CR45031 INTRON fas
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	4.797e^-5	0.989	UPSTREAM bbg INTRON bbg
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	5.029e^-5	0.989	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18950671	2L_18950671_SNP [dm3] 2L_18950671_SNP [dm6]	C	A	5.068e^-5	0.989	NON_SYNONYMOUS_CODING CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_sens
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	5.073e^-5	0.989	INTRON Octbeta2R
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	5.127e^-5	0.989	INTRON FMRFaR
2R	14214375	2R_14214375_SNP [dm3] 2R_18326870_SNP [dm6]	A	T	5.168e^-5	0.989	INTRON sbb
3L	3007694	3L_3007694_SNP [dm3] 3L_3007694_SNP [dm6]	T	A	5.297e^-5	0.989	INTRON FMRFaR
2L	16048312	2L_16048312_DEL [dm3] 2L_16048312_DEL [dm6]	AA	A	5.306e^-5	0.989	UTR_3_PRIME CG45084 & 1 other
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	5.404e^-5	0.989	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
X	7888638	X_7888638_SNP [dm3] X_7994605_SNP [dm6]	G	A	5.407e^-5	0.989	INTERGENIC
X	7888702	X_7888702_SNP [dm3] X_7994669_SNP [dm6]	C	A	5.407e^-5	0.989	INTERGENIC
X	7889003	X_7889003_SNP [dm3] X_7994970_SNP [dm6]	C	G	5.407e^-5	0.989	UPSTREAM Tbh INTERGENIC
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	5.455e^-5	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	5.506e^-5	0.989	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12476994	2R_12476994_SNP [dm3] 2R_16589489_SNP [dm6]	T	A	5.649e^-5	0.989	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	20267118	2L_20267118_SNP [dm3] 2L_20267118_SNP [dm6]	C	T	5.749e^-5	0.989	INTERGENIC
2R	17962080	2R_17962080_SNP [dm3] 2R_22074575_SNP [dm6]	T	C	5.796e^-5	0.989	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	5.836e^-5	0.989	DOWNSTREAM CR44792 INTERGENIC
X	16430642	X_16430642_SNP [dm3] X_16536609_SNP [dm6]	A	G	5.921e^-5	0.989	INTERGENIC
3R	24741429	3R_24741429_SNP [dm3] 3R_28915707_SNP [dm6]	T	C	5.935e^-5	0.989	INTRON Doa
2L	9817240	2L_9817240_SNP [dm3] 2L_9817240_SNP [dm6]	T	C	6.025e^-5	0.989	INTRON nAChRalpha6
X	16824362	X_16824362_SNP [dm3] X_16930329_SNP [dm6]	C	T	6.074e^-5	0.989	INTRON CG4928
3R	8433693	3R_8433693_SNP [dm3] 3R_12607971_SNP [dm6]	G	A	6.097e^-5	0.989	INTERGENIC
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	6.105e^-5	0.989	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14457892	3L_14457892_SNP [dm3] 3L_14464792_SNP [dm6]	C	T	6.115e^-5	0.989	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3008224	3L_3008224_SNP [dm3] 3L_3008224_SNP [dm6]	A	G	6.117e^-5	0.989	INTRON FMRFaR
2L	14659853	2L_14659853_SNP [dm3] 2L_14659853_SNP [dm6]	T	C	6.152e^-5	0.989	INTRON osp
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	6.243e^-5	0.989	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	6.309e^-5	0.989	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15536946	2R_15536946_SNP [dm3] 2R_19649441_SNP [dm6]	A	C	6.352e^-5	0.989	INTERGENIC
3L	3007740	3L_3007740_INS [dm3] 3L_3007740_INS [dm6]	T	TAAAAAAATATGTTTTT...	6.403e^-5	0.989	INTRON FMRFaR
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	6.418e^-5	0.989	DOWNSTREAM inv INTERGENIC
3L	3007817	3L_3007817_SNP [dm3] 3L_3007817_SNP [dm6]	C	T	6.437e^-5	0.989	INTRON FMRFaR
X	16824361	X_16824361_SNP [dm3] X_16930328_SNP [dm6]	A	T	6.461e^-5	0.989	INTRON CG4928
3L	3007752	3L_3007752_SNP [dm3] 3L_3007752_SNP [dm6]	G	C	6.535e^-5	0.989	INTRON FMRFaR
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	6.555e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10266111	3L_10266111_SNP [dm3] 3L_10273011_SNP [dm6]	T	A	6.618e^-5	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	18203971	X_18203971_SNP [dm3] X_18309938_SNP [dm6]	C	T	6.664e^-5	0.989	UPSTREAM os DOWNSTREAM CR45608 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	6.720e^-5	0.989	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	6.743e^-5	0.989	INTRON twin
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	6.847e^-5	0.989	INTERGENIC
3L	17174848	3L_17174848_SNP [dm3] 3L_17181748_SNP [dm6]	C	T	6.963e^-5	0.989	INTRON Rbp6
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	6.984e^-5	0.989	INTRON caps
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	7.010e^-5	0.989	INTRON Eip63E
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	7.105e^-5	0.989	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	14105661	3R_14105661_SNP [dm3] 3R_18279939_SNP [dm6]	A	T	7.131e^-5	0.989	UPSTREAM CG7142 INTRON eIF-1A
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	7.145e^-5	0.989	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12371920	3L_12371920_SNP [dm3] 3L_12378820_SNP [dm6]	A	T	7.145e^-5	0.989	INTRON Ncc69
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	7.174e^-5	0.989	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	7.204e^-5	0.989	NON_SYNONYMOUS_CODING bbg
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	7.222e^-5	0.989	INTERGENIC
2L	14417942	2L_14417942_INS [dm3] 2L_14417942_INS [dm6]	T	TAGCT	7.385e^-5	0.989	UPSTREAM Pburs INTERGENIC
2R	11479534	2R_11479534_SNP [dm3] 2R_15592029_SNP [dm6]	T	C	7.473e^-5	0.989	INTERGENIC
X	17076851	X_17076851_DEL [dm3] X_17182818_DEL [dm6]	TACTCAGATAAGT...	T	7.587e^-5	0.989	DOWNSTREAM CR44026 INTRON baz
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	7.597e^-5	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6071285	2L_6071285_SNP [dm3] 2L_6071285_SNP [dm6]	C	T	7.701e^-5	0.989	UPSTREAM CG9154 & 1 other INTRON Kr-h2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	7.736e^-5	0.989	UPSTREAM bbg INTRON bbg
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	7.828e^-5	0.989	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3023509	3L_3023509_SNP [dm3] 3L_3023509_SNP [dm6]	T	A	7.831e^-5	0.989	DOWNSTREAM aly INTERGENIC
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	7.887e^-5	0.989	INTRON rgn
2L	14659878	2L_14659878_SNP [dm3] 2L_14659878_SNP [dm6]	C	T	7.910e^-5	0.989	INTRON osp
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	7.970e^-5	0.989	INTRON beat-IV
2R	14835737	2R_14835737_SNP [dm3] 2R_18948232_SNP [dm6]	C	A	8.099e^-5	0.989	INTRON sano
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	8.135e^-5	0.989	DOWNSTREAM mthl13 INTRON CG33144
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	8.180e^-5	0.989	INTRON rgn
3R	10265577	3R_10265577_SNP [dm3] 3R_14439855_SNP [dm6]	G	A	8.450e^-5	0.989	INTRON cv-c	TF binding site mE1_TFBS_sbb
3L	16889114	3L_16889114_SNP [dm3] 3L_16896014_SNP [dm6]	T	G	8.452e^-5	0.989	INTRON Lmpt
3L	16408879	3L_16408879_SNP [dm3] 3L_16415779_SNP [dm6]	C	T	8.466e^-5	0.989	NON_SYNONYMOUS_CODING CG4573 DOWNSTREAM TMS1
3L	17177414	3L_17177414_SNP [dm3] 3L_17184314_SNP [dm6]	T	G	8.588e^-5	0.989	INTRON Rbp6
2R	15131891	2R_15131891_SNP [dm3] 2R_19244386_SNP [dm6]	C	G	8.603e^-5	0.989	DOWNSTREAM cora INTERGENIC
2R	14452283	2R_14452283_SNP [dm3] 2R_18564778_SNP [dm6]	G	A	8.703e^-5	0.989	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4235489	3L_4235489_SNP [dm3] 3L_4235489_SNP [dm6]	C	T	8.909e^-5	0.989	INTRON ImpL2
3L	14507741	3L_14507741_SNP [dm3] 3L_14514641_SNP [dm6]	T	C	9.036e^-5	0.989	INTRON bbg	enhancer mE1_CBP_Enhancers
2L	20144402	2L_20144402_SNP [dm3] 2L_20144402_SNP [dm6]	G	A	9.182e^-5	0.989	INTERGENIC
3R	15663385	3R_15663385_SNP [dm3] 3R_19837663_SNP [dm6]	G	C	9.258e^-5	0.989	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	9.285e^-5	0.989	INTRON kirre
3L	21994296	3L_21994296_SNP [dm3] 3L_22001196_SNP [dm6]	G	T	9.378e^-5	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	9.404e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	9.430e^-5	0.989	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
3L	6785353	3L_6785353_SNP [dm3] 3L_6792253_SNP [dm6]	C	T	9.523e^-5	0.989	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	3750613	3L_3750613_SNP [dm3] 3L_3750613_SNP [dm6]	T	C	9.564e^-5	0.989	INTRON CG32264
2L	16147521	2L_16147521_SNP [dm3] 2L_16147521_SNP [dm6]	A	G	9.883e^-5	0.989	INTERGENIC
2L	12511136	2L_12511136_SNP [dm3] 2L_12511136_SNP [dm6]	A	G	9.972e^-5	0.989	INTRON bun
2L	4629811	2L_4629811_SNP [dm3] 2L_4629811_SNP [dm6]	T	C	9.987e^-5	0.989	INTERGENIC
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	1.005e^-4	0.989	DOWNSTREAM mthl13 INTRON CG33144
3L	3023532	3L_3023532_SNP [dm3] 3L_3023532_SNP [dm6]	C	T	1.014e^-4	0.989	DOWNSTREAM aly INTERGENIC
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	1.032e^-4	0.989	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3L	16662038	3L_16662038_SNP [dm3] 3L_16668938_SNP [dm6]	T	C	1.035e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	1.044e^-4	0.989	INTRON CG33700
3L	3007878	3L_3007878_SNP [dm3] 3L_3007878_SNP [dm6]	G	C	1.048e^-4	0.989	INTRON FMRFaR
X	4075985	X_4075985_SNP [dm3] X_4181952_SNP [dm6]	G	A	1.073e^-4	0.989	INTRON Fas2
2R	19218202	2R_19218202_SNP [dm3] 2R_23330679_SNP [dm6]	T	C	1.079e^-4	0.989	UPSTREAM CG30413 INTERGENIC
3L	3008320	3L_3008320_SNP [dm3] 3L_3008320_SNP [dm6]	C	A	1.080e^-4	0.989	INTRON FMRFaR
X	22048485	X_22048485_SNP [dm3] X_22646649_SNP [dm6]	G	C	1.104e^-4	0.989	INTERGENIC
X	3213243	X_3213243_SNP [dm3] X_3319210_SNP [dm6]	G	A	1.106e^-4	0.989	INTRON dnc & 1 other
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	1.111e^-4	0.989	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3647557	2L_3647557_SNP [dm3] 2L_3647557_SNP [dm6]	C	T	1.115e^-4	0.989	INTRON for
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	1.127e^-4	0.989	DOWNSTREAM CG3982 INTRON CG3967
X	17116406	X_17116406_SNP [dm3] X_17222373_SNP [dm6]	G	T	1.132e^-4	0.989	SYNONYMOUS_CODING CG5172 DOWNSTREAM CG34327 INTRON CG5172
3R	15801238	3R_15801238_SNP [dm3] 3R_19975516_SNP [dm6]	T	C	1.132e^-4	0.989	INTRON Hs6st & 1 other
3R	15801243	3R_15801243_SNP [dm3] 3R_19975521_SNP [dm6]	T	C	1.132e^-4	0.989	INTRON Hs6st & 1 other
3L	3008347	3L_3008347_SNP [dm3] 3L_3008347_SNP [dm6]	C	G	1.134e^-4	0.989	INTRON FMRFaR
3L	14763115	3L_14763115_SNP [dm3] 3L_14770015_SNP [dm6]	A	T	1.137e^-4	0.989	NON_SYNONYMOUS_CODING mop UPSTREAM CG17173
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	1.140e^-4	0.989	INTRON HDAC4
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	1.149e^-4	0.989	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	14659830	2L_14659830_SNP [dm3] 2L_14659830_SNP [dm6]	C	T	1.167e^-4	0.989	INTRON osp
3L	18134818	3L_18134818_SNP [dm3] 3L_18141718_SNP [dm6]	A	G	1.176e^-4	0.989	INTRON gk
2L	18090252	2L_18090252_SNP [dm3] 2L_18090252_SNP [dm6]	A	T	1.179e^-4	0.989	DOWNSTREAM CG15153 INTERGENIC
X	7888153	X_7888153_SNP [dm3] X_7994120_SNP [dm6]	G	A	1.190e^-4	0.989	INTERGENIC
X	19184397	X_19184397_SNP [dm3] X_19290364_SNP [dm6]	A	T	1.194e^-4	0.989	INTRON CG8034
X	10415731	X_10415731_SNP [dm3] X_10521698_SNP [dm6]	G	A	1.196e^-4	0.989	INTRON spri
X	2933209	X_2933209_SNP [dm3] X_3039176_SNP [dm6]	G	A	1.202e^-4	0.989	INTRON kirre
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.220e^-4	0.989	INTRON beat-Vc
2L	20267013	2L_20267013_SNP [dm3] 2L_20267013_SNP [dm6]	G	A	1.231e^-4	0.989	INTERGENIC
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	1.233e^-4	0.989	INTERGENIC
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	1.237e^-4	0.989	UPSTREAM CG1722 INTRON CG32521
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	1.246e^-4	0.989	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3634187	3L_3634187_SNP [dm3] 3L_3634187_SNP [dm6]	A	T	1.254e^-4	0.989	INTRON dar1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	1.281e^-4	0.989	INTRON spir & 1 other
3L	3008329	3L_3008329_SNP [dm3] 3L_3008329_SNP [dm6]	A	G	1.285e^-4	0.989	INTRON FMRFaR
2L	12511132	2L_12511132_SNP [dm3] 2L_12511132_SNP [dm6]	T	C	1.288e^-4	0.989	INTRON bun
2L	20126418	2L_20126418_SNP [dm3] 2L_20126418_SNP [dm6]	A	C	1.299e^-4	0.989	INTERGENIC
2L	13022442	2L_13022442_SNP [dm3] 2L_13022442_SNP [dm6]	A	C	1.306e^-4	0.989	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
3L	17247615	3L_17247615_SNP [dm3] 3L_17254515_SNP [dm6]	A	G	1.306e^-4	0.989	UPSTREAM CG6497 INTRON CR43870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14480200	3L_14480200_SNP [dm3] 3L_14487100_SNP [dm6]	G	C	1.308e^-4	0.989	INTRON bbg
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	1.309e^-4	0.989	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
2R	1490574	2R_1490574_SNP [dm3] 2R_5603069_SNP [dm6]	T	A	1.309e^-4	0.989	DOWNSTREAM Fis1 INTERGENIC
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	1.324e^-4	0.989	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	1.330e^-4	0.989	INTRON kirre
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	1.334e^-4	0.989	INTRON mam
X	22046256	X_22046256_SNP [dm3] X_22644420_SNP [dm6]	T	A	1.339e^-4	0.989	INTERGENIC
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	1.341e^-4	0.989	INTRON Dscam2	TF binding site mE1_TFBS_HSA
2R	1300621	2R_1300621_SNP [dm3] 2R_5413116_SNP [dm6]	G	A	1.351e^-4	0.989	UPSTREAM laccase2 INTERGENIC
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	1.351e^-4	0.989	INTRON CG34377
2L	9858403	2L_9858403_SNP [dm3] 2L_9858403_SNP [dm6]	A	C	1.352e^-4	0.989	INTRON nAChRalpha6
2R	10864084	2R_10864084_SNP [dm3] 2R_14976579_SNP [dm6]	A	G	1.353e^-4	0.989	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	17074234	X_17074234_SNP [dm3] X_17180201_SNP [dm6]	T	G	1.360e^-4	0.989	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6070742	2L_6070742_SNP [dm3] 2L_6070742_SNP [dm6]	A	C	1.360e^-4	0.989	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3L	14457876	3L_14457876_SNP [dm3] 3L_14464776_SNP [dm6]	A	C	1.372e^-4	0.989	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	1.372e^-4	0.989	INTERGENIC
3L	2831855	3L_2831855_SNP [dm3] 3L_2831855_SNP [dm6]	A	T	1.378e^-4	0.989	INTRON CG43444
2R	1489765	2R_1489765_SNP [dm3] 2R_5602260_SNP [dm6]	A	G	1.389e^-4	0.989	INTERGENIC
3R	14086265	3R_14086265_SNP [dm3] 3R_18260543_SNP [dm6]	G	A	1.393e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16436473	2R_16436473_SNP [dm3] 2R_20548968_SNP [dm6]	A	G	1.398e^-4	0.989	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
3L	7485024	3L_7485024_SNP [dm3] 3L_7491924_SNP [dm6]	G	A	1.401e^-4	0.989	NON_SYNONYMOUS_CODING Cyp316a1
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	1.402e^-4	0.989	INTRON CG31637
X	12400535	X_12400535_SNP [dm3] X_12506502_SNP [dm6]	C	T	1.403e^-4	0.989	INTRON CG2556
3R	26318092	3R_26318092_SNP [dm3] 3R_30492370_SNP [dm6]	A	T	1.406e^-4	0.989	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	4629113	2L_4629113_SNP [dm3] 2L_4629113_SNP [dm6]	A	T	1.408e^-4	0.989	INTERGENIC
3L	7419459	3L_7419459_SNP [dm3] 3L_7426359_SNP [dm6]	A	T	1.408e^-4	0.989	INTRON CG42458
3L	14501913	3L_14501913_SNP [dm3] 3L_14508813_SNP [dm6]	A	G	1.419e^-4	0.989	NON_SYNONYMOUS_CODING bbg
3L	14501929	3L_14501929_SNP [dm3] 3L_14508829_SNP [dm6]	T	G	1.419e^-4	0.989	NON_SYNONYMOUS_CODING bbg
X	17061793	X_17061793_SNP [dm3] X_17167760_SNP [dm6]	A	T	1.425e^-4	0.989	INTRON baz
X	17061814	X_17061814_DEL [dm3] X_17167781_DEL [dm6]	CAAGCTAAC	C	1.425e^-4	0.989	INTRON baz
3R	17670385	3R_17670385_SNP [dm3] 3R_21844663_SNP [dm6]	G	A	1.435e^-4	0.989	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	1.440e^-4	0.989	UTR_3_PRIME hec DOWNSTREAM fne
2L	19901797	2L_19901797_DEL [dm3] 2L_19901797_DEL [dm6]	TAAAAACAAAA...	T	1.447e^-4	0.989	INTRON sick
2R	10536363	2R_10536363_SNP [dm3] 2R_14648858_SNP [dm6]	C	T	1.462e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14336596	3L_14336596_SNP [dm3] 3L_14343496_SNP [dm6]	T	C	1.467e^-4	0.989	INTRON fz
3L	14504531	3L_14504531_SNP [dm3] 3L_14511431_SNP [dm6]	G	T	1.472e^-4	0.989	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
2R	16436450	2R_16436450_SNP [dm3] 2R_20548945_SNP [dm6]	T	C	1.473e^-4	0.989	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
X	7889663	X_7889663_SNP [dm3] X_7995630_SNP [dm6]	C	A	1.479e^-4	0.989	UPSTREAM Tbh INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10513554	X_10513554_SNP [dm3] X_10619521_SNP [dm6]	G	T	1.489e^-4	0.989	INTRON CG43347	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	1.491e^-4	0.989	INTERGENIC
3R	21380294	3R_21380294_SNP [dm3] 3R_25554572_SNP [dm6]	C	A	1.492e^-4	0.989	INTRON msi
2R	9458858	2R_9458858_SNP [dm3] 2R_13571353_SNP [dm6]	T	C	1.502e^-4	0.989	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Stat92E
2L	7278198	2L_7278198_SNP [dm3] 2L_7278198_SNP [dm6]	G	A	1.510e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	20959777	2L_20959777_SNP [dm3] 2L_20959777_SNP [dm6]	G	T	1.518e^-4	0.989	INTERGENIC
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	1.520e^-4	0.989	UTR_3_PRIME hec DOWNSTREAM fne
3L	3009006	3L_3009006_SNP [dm3] 3L_3009006_SNP [dm6]	C	T	1.529e^-4	0.989	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	7883626	X_7883626_SNP [dm3] X_7989593_SNP [dm6]	C	T	1.548e^-4	0.989	INTERGENIC
X	14297345	X_14297345_SNP [dm3] X_14403312_SNP [dm6]	G	A	1.553e^-4	0.989	INTRON dpr8
3L	3007737	3L_3007737_SNP [dm3] 3L_3007737_SNP [dm6]	C	T	1.555e^-4	0.989	INTRON FMRFaR
2L	20418313	2L_20418313_INS [dm3] 2L_20418313_INS [dm6]	G	GCCTTAATT	1.557e^-4	0.989	UPSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3647837	2L_3647837_SNP [dm3] 2L_3647837_SNP [dm6]	G	A	1.577e^-4	0.989	INTRON for
2R	9712547	2R_9712547_SNP [dm3] 2R_13825042_SNP [dm6]	G	C	1.578e^-4	0.989	NON_SYNONYMOUS_CODING CG13339 UPSTREAM fl_2_d	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6497753	2L_6497753_SNP [dm3] 2L_6497753_SNP [dm6]	T	C	1.582e^-4	0.989	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3R	4423569	3R_4423569_SNP [dm3] 3R_8597847_SNP [dm6]	T	A	1.585e^-4	0.989	INTRON 5-HT2B
3L	6795874	3L_6795874_SNP [dm3] 3L_6802774_SNP [dm6]	G	C	1.595e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19907126	2L_19907126_SNP [dm3] 2L_19907126_SNP [dm6]	C	T	1.603e^-4	0.989	INTRON sick
2R	3309327	2R_3309327_SNP [dm3] 2R_7421822_SNP [dm6]	A	G	1.614e^-4	0.989	DOWNSTREAM CR44202 INTRON so	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9177820	2R_9177820_SNP [dm3] 2R_13290315_SNP [dm6]	A	T	1.619e^-4	0.989	INTRON Dh31-R
2L	4767559	2L_4767559_SNP [dm3] 2L_4767559_SNP [dm6]	C	T	1.620e^-4	0.989	INTRON CG15630
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	1.622e^-4	0.989	INTRON nemy
2R	10071129	2R_10071129_SNP [dm3] 2R_14183624_SNP [dm6]	T	C	1.625e^-4	0.989	DOWNSTREAM cg INTERGENIC
3L	8655862	3L_8655862_DEL [dm3] 3L_8662762_DEL [dm6]	GATGGG	G	1.634e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7426782	2R_7426782_SNP [dm3] 2R_11539277_SNP [dm6]	T	C	1.640e^-4	0.989	INTERGENIC
2L	5893788	2L_5893788_SNP [dm3] 2L_5893788_SNP [dm6]	G	A	1.645e^-4	0.989	UPSTREAM Acp26Ab INTRON Acp26Aa
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.645e^-4	0.989	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21146864	3R_21146864_SNP [dm3] 3R_25321142_SNP [dm6]	G	A	1.647e^-4	0.989	UTR_3_PRIME CG10562
2L	10197407	2L_10197407_SNP [dm3] 2L_10197407_SNP [dm6]	C	T	1.651e^-4	0.989	INTRON Sur	regulatory region REDfly_CRMs
2R	1488068	2R_1488068_SNP [dm3] 2R_5600563_SNP [dm6]	C	T	1.652e^-4	0.989	INTERGENIC	transposable element FlyBase
2R	1494344	2R_1494344_SNP [dm3] 2R_5606839_SNP [dm6]	C	G	1.652e^-4	0.989	INTERGENIC
2R	1499357	2R_1499357_DEL [dm3] 2R_5611852_DEL [dm6]	CATGCCGGGCGTCCTATTCT...	C	1.652e^-4	0.989	DOWNSTREAM CG17508 INTERGENIC
3L	6695126	3L_6695126_SNP [dm3] 3L_6702026_SNP [dm6]	G	A	1.652e^-4	0.989	INTRON SP1173
X	8068453	X_8068453_DEL [dm3] X_8174420_DEL [dm6]	TAGAGTAAAGTAATGTAGAA...	T	1.657e^-4	0.989	INTRON slpr
2R	6588363	2R_6588363_SNP [dm3] 2R_10700858_SNP [dm6]	G	A	1.660e^-4	0.989	INTRON stan
2R	12476956	2R_12476956_DEL [dm3] 2R_16589451_DEL [dm6]	AT	A	1.664e^-4	0.989	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9705679	2L_9705679_SNP [dm3] 2L_9705679_SNP [dm6]	G	A	1.668e^-4	0.989	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	1.668e^-4	0.989	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	10197413	2L_10197413_SNP [dm3] 2L_10197413_SNP [dm6]	T	G	1.669e^-4	0.989	INTRON Sur	regulatory region REDfly_CRMs
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	1.676e^-4	0.989	UPSTREAM CG33225 INTERGENIC
3L	2703732	3L_2703732_SNP [dm3] 3L_2703732_SNP [dm6]	G	T	1.681e^-4	0.989	INTRON Fife
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	1.685e^-4	0.989	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1499609	2R_1499609_SNP [dm3] 2R_5612104_SNP [dm6]	G	T	1.705e^-4	0.989	DOWNSTREAM CG17508 INTERGENIC
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	1.721e^-4	0.989	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13319209	3L_13319209_SNP [dm3] 3L_13326109_SNP [dm6]	C	T	1.722e^-4	0.989	INTERGENIC
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	1.724e^-4	0.989	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14763134	3L_14763134_SNP [dm3] 3L_14770034_SNP [dm6]	T	C	1.725e^-4	0.989	SYNONYMOUS_CODING mop UPSTREAM CG17173
X	904194	X_904194_SNP [dm3] X_1010161_SNP [dm6]	G	A	1.748e^-4	0.989	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	1.751e^-4	0.989	INTERGENIC
3L	12354566	3L_12354566_SNP [dm3] 3L_12361466_SNP [dm6]	A	G	1.760e^-4	0.989	INTERGENIC
2R	1497856	2R_1497856_SNP [dm3] 2R_5610351_SNP [dm6]	A	C	1.777e^-4	0.989	DOWNSTREAM CG17508 INTRON CG17508
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	1.787e^-4	0.989	INTRON kirre
2L	11093051	2L_11093051_SNP [dm3] 2L_11093051_SNP [dm6]	A	G	1.791e^-4	0.989	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA
2L	16311859	2L_16311859_DEL [dm3] 2L_16311859_DEL [dm6]	TT	T	1.814e^-4	0.989	INTRON fzy	TF binding site mE1_TFBS_sens
2L	6800712	2L_6800712_SNP [dm3] 2L_6800712_SNP [dm6]	G	T	1.854e^-4	0.989	DOWNSTREAM tRNA:CR31631 & 1 other INTRON CG17376	regulatory region REDfly_CRMs
3L	23075295	3L_23075295_SNP [dm3] 3L_23082195_SNP [dm6]	A	C	1.857e^-4	0.989	INTERGENIC
2L	4698035	2L_4698035_SNP [dm3] 2L_4698035_SNP [dm6]	C	G	1.857e^-4	0.989	INTRON CG34351
2R	1490924	2R_1490924_SNP [dm3] 2R_5603419_SNP [dm6]	A	G	1.863e^-4	0.989	DOWNSTREAM Fis1 INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	1.863e^-4	0.989	SYNONYMOUS_CODING S-Lap2
3L	13320516	3L_13320516_SNP [dm3] 3L_13327416_SNP [dm6]	C	T	1.866e^-4	0.989	INTERGENIC
3L	16871431	3L_16871431_SNP [dm3] 3L_16878331_SNP [dm6]	T	G	1.882e^-4	0.989	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_HSA
X	4836628	X_4836628_SNP [dm3] X_4942595_SNP [dm6]	G	A	1.887e^-4	0.989	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
X	7884860	X_7884860_SNP [dm3] X_7990827_SNP [dm6]	C	A	1.897e^-4	0.989	INTERGENIC
3L	10209342	3L_10209342_SNP [dm3] 3L_10216242_SNP [dm6]	C	T	1.898e^-4	0.989	SYNONYMOUS_CODING CG8065
2L	9043147	2L_9043147_SNP [dm3] 2L_9043147_SNP [dm6]	C	A	1.899e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6035855	2L_6035855_SNP [dm3] 2L_6035855_SNP [dm6]	T	C	1.915e^-4	0.989	SYNONYMOUS_CODING mtm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	1.921e^-4	0.989	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2R	1497947	2R_1497947_SNP [dm3] 2R_5610442_SNP [dm6]	T	C	1.931e^-4	0.989	DOWNSTREAM CG17508 INTRON CG17508	transposable element FlyBase
2R	11737079	2R_11737079_SNP [dm3] 2R_15849574_SNP [dm6]	C	T	1.937e^-4	0.989	UTR_5_PRIME tun
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	1.950e^-4	0.989	INTRON fz
2R	1488295	2R_1488295_SNP [dm3] 2R_5600790_SNP [dm6]	A	T	1.956e^-4	0.989	INTERGENIC	transposable element FlyBase
3L	14564886	3L_14564886_SNP [dm3] 3L_14571786_SNP [dm6]	C	A	1.961e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8803723	2R_8803723_SNP [dm3] 2R_12916218_SNP [dm6]	C	G	1.966e^-4	0.989	INTRON NAT1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17086450	2R_17086450_DEL [dm3] 2R_21198945_DEL [dm6]	AT	A	1.968e^-4	0.989	INTRON Lapsyn
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	1.969e^-4	0.989	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	10531800	2R_10531800_SNP [dm3] 2R_14644295_SNP [dm6]	C	T	1.980e^-4	0.989	UPSTREAM CG10139 INTERGENIC
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	1.981e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8059361	3L_8059361_SNP [dm3] 3L_8066261_SNP [dm6]	A	G	1.982e^-4	0.989	UPSTREAM tRNA:CR32361 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21147043	3R_21147043_SNP [dm3] 3R_25321321_SNP [dm6]	T	A	1.985e^-4	0.989	NON_SYNONYMOUS_CODING CG10562
3L	8078152	3L_8078152_SNP [dm3] 3L_8085052_SNP [dm6]	T	C	1.986e^-4	0.989	INTRON Ect4
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	1.988e^-4	0.989	DOWNSTREAM CG14017 INTRON GluRIIA
2L	19233416	2L_19233416_INS [dm3] 2L_19233416_INS [dm6]	A	AAATAAAGTGC...	1.988e^-4	0.989	INTERGENIC
2R	1489982	2R_1489982_SNP [dm3] 2R_5602477_SNP [dm6]	C	A	1.989e^-4	0.989	INTERGENIC
X	16471760	X_16471760_SNP [dm3] X_16577727_SNP [dm6]	T	G	1.997e^-4	0.989	INTRON CanA-14F
3R	10914946	3R_10914946_SNP [dm3] 3R_15089224_SNP [dm6]	A	T	2.006e^-4	0.989	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	2.008e^-4	0.989	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3020925	3L_3020925_SNP [dm3] 3L_3020925_SNP [dm6]	G	A	2.012e^-4	0.989	INTERGENIC
2R	4271293	2R_4271293_SNP [dm3] 2R_8383788_SNP [dm6]	T	C	2.014e^-4	0.989	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14507201	3L_14507201_SNP [dm3] 3L_14514101_SNP [dm6]	A	T	2.021e^-4	0.989	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
2L	6800496	2L_6800496_SNP [dm3] 2L_6800496_SNP [dm6]	A	T	2.027e^-4	0.989	SYNONYMOUS_CODING CG17376 DOWNSTREAM CR43610 & 2 others INTRON CG17376	regulatory region REDfly_CRMs
3L	21549626	3L_21549626_SNP [dm3] 3L_21556526_SNP [dm6]	G	C	2.032e^-4	0.989	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2L	8346053	2L_8346053_SNP [dm3] 2L_8346053_SNP [dm6]	C	T	2.032e^-4	0.989	UPSTREAM CG7778 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21106881	2L_21106881_SNP [dm3] 2L_21106881_SNP [dm6]	T	G	2.034e^-4	0.989	UPSTREAM Nhe2 INTRON Nhe2 EXON CR44056	TF binding site BDTNP1_TFBS_dl
2L	14076334	2L_14076334_SNP [dm3] 2L_14076334_SNP [dm6]	G	C	2.050e^-4	0.989	INTRON nAChRalpha5
3L	21549601	3L_21549601_SNP [dm3] 3L_21556501_SNP [dm6]	A	G	2.050e^-4	0.989	SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2R	8692411	2R_8692411_SNP [dm3] 2R_12804906_SNP [dm6]	G	A	2.053e^-4	0.989	INTERGENIC
3L	7101847	3L_7101847_SNP [dm3] 3L_7108747_SNP [dm6]	G	A	2.054e^-4	0.989	INTRON form3
2L	11185606	2L_11185606_SNP [dm3] 2L_11185606_SNP [dm6]	T	C	2.054e^-4	0.989	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	10266258	3L_10266258_SNP [dm3] 3L_10273158_SNP [dm6]	G	A	2.061e^-4	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	8802941	2R_8802941_SNP [dm3] 2R_12915436_SNP [dm6]	G	C	2.071e^-4	0.989	UPSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	4697314	2L_4697314_SNP [dm3] 2L_4697314_SNP [dm6]	G	A	2.073e^-4	0.989	INTRON CG34351
3L	14501859	3L_14501859_SNP [dm3] 3L_14508759_SNP [dm6]	C	T	2.073e^-4	0.989	NON_SYNONYMOUS_CODING bbg
3R	6393885	3R_6393885_SNP [dm3] 3R_10568163_SNP [dm6]	C	T	2.074e^-4	0.989	INTRON hth	TF binding site mE1_TFBS_cnc
X	3904226	X_3904226_SNP [dm3] X_4010193_SNP [dm6]	T	G	2.075e^-4	0.989	INTERGENIC
2R	7428281	2R_7428281_SNP [dm3] 2R_11540776_SNP [dm6]	A	G	2.095e^-4	0.989	INTERGENIC
2R	4155690	2R_4155690_SNP [dm3] 2R_8268185_SNP [dm6]	C	T	2.097e^-4	0.989	SYNONYMOUS_CODING CG30371 UPSTREAM CG30375	TF binding site mE1_TFBS_cad
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	2.099e^-4	0.989	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
3L	21544517	3L_21544517_SNP [dm3] 3L_21551417_SNP [dm6]	G	A	2.101e^-4	0.989	SYNONYMOUS_CODING Wnk
2L	11093984	2L_11093984_SNP [dm3] 2L_11093984_SNP [dm6]	T	G	2.112e^-4	0.989	NON_SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1490942	2R_1490942_SNP [dm3] 2R_5603437_SNP [dm6]	G	A	2.114e^-4	0.989	DOWNSTREAM Fis1 INTERGENIC
2L	13022490	2L_13022490_INS [dm3] 2L_13022490_INS [dm6]	T	TT	2.115e^-4	0.989	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
X	12057293	X_12057293_SNP [dm3] X_12163260_SNP [dm6]	T	C	2.121e^-4	0.989	INTRON Ten-a
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	2.125e^-4	0.989	INTERGENIC
3L	6513601	3L_6513601_SNP [dm3] 3L_6520501_SNP [dm6]	C	A	2.133e^-4	0.989	INTRON sfl
2L	12577657	2L_12577657_DEL [dm3] 2L_12577657_DEL [dm6]	GAAACAATG	G	2.136e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13171749	X_13171749_SNP [dm3] X_13277716_SNP [dm6]	G	T	2.137e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	4836717	X_4836717_SNP [dm3] X_4942684_SNP [dm6]	T	C	2.143e^-4	0.989	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
X	3222410	X_3222410_SNP [dm3] X_3328377_SNP [dm6]	G	C	2.145e^-4	0.989	INTRON CR44886 & 1 other
2R	9357303	2R_9357303_SNP [dm3] 2R_13469798_SNP [dm6]	G	A	2.150e^-4	0.989	INTRON arr
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	2.152e^-4	0.989	INTERGENIC
X	7181683	X_7181683_SNP [dm3] X_7287650_SNP [dm6]	C	T	2.154e^-4	0.989	DOWNSTREAM unc-119 INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens mE1_TFBS_Ubx
3L	10689860	3L_10689860_SNP [dm3] 3L_10696760_SNP [dm6]	C	T	2.157e^-4	0.989	UTR_5_PRIME NijA
3L	1579661	3L_1579661_SNP [dm3] 3L_1579661_SNP [dm6]	C	T	2.163e^-4	0.989	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6396295	3L_6396295_SNP [dm3] 3L_6403195_SNP [dm6]	G	T	2.168e^-4	0.989	INTRON CG42747
3L	13320545	3L_13320545_SNP [dm3] 3L_13327445_SNP [dm6]	T	C	2.172e^-4	0.989	INTERGENIC
3L	14143083	3L_14143083_SNP [dm3] 3L_14149983_SNP [dm6]	T	C	2.178e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	2.180e^-4	0.989	SYNONYMOUS_CODING CG31321
2L	19882745	2L_19882745_SNP [dm3] 2L_19882745_SNP [dm6]	A	C	2.181e^-4	0.989	INTRON sick
2L	5872879	2L_5872879_INS [dm3] 2L_5872879_INS [dm6]	A	AAGTGGC	2.183e^-4	0.989	INTRON rau	TF binding site mE1_TFBS_sens
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	2.193e^-4	0.989	DOWNSTREAM CR44026 INTRON baz
2L	20285277	2L_20285277_SNP [dm3] 2L_20285277_SNP [dm6]	C	T	2.199e^-4	0.989	INTERGENIC
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	2.205e^-4	0.989	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19934550	2L_19934550_SNP [dm3] 2L_19934550_SNP [dm6]	A	T	2.216e^-4	0.989	UPSTREAM sick & 1 other INTRON sick	TF binding site BDTNP1_TFBS_dl
3R	17801815	3R_17801815_SNP [dm3] 3R_21976093_SNP [dm6]	A	C	2.222e^-4	0.989	INTRON Eip93F
3L	3021299	3L_3021299_SNP [dm3] 3L_3021299_SNP [dm6]	T	A	2.222e^-4	0.989	INTERGENIC
X	14153435	X_14153435_SNP [dm3] X_14259402_SNP [dm6]	G	T	2.223e^-4	0.989	DOWNSTREAM mud INTERGENIC
2L	11093702	2L_11093702_SNP [dm3] 2L_11093702_SNP [dm6]	C	A	2.225e^-4	0.989	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA
X	13173679	X_13173679_SNP [dm3] X_13279646_SNP [dm6]	A	G	2.226e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	12896221	2L_12896221_SNP [dm3] 2L_12896221_SNP [dm6]	A	G	2.230e^-4	0.989	INTERGENIC
2L	12896396	2L_12896396_SNP [dm3] 2L_12896396_SNP [dm6]	C	A	2.230e^-4	0.989	INTERGENIC
3R	26317084	3R_26317084_SNP [dm3] 3R_30491362_SNP [dm6]	G	A	2.238e^-4	0.989	SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM PH4alphaMP	TF binding site mE1_TFBS_cad
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	2.246e^-4	0.989	INTRON hdc
2L	17284518	2L_17284518_INS [dm3] 2L_17284518_INS [dm6]	A	AA	2.258e^-4	0.989	INTERGENIC
3R	10916122	3R_10916122_SNP [dm3] 3R_15090400_SNP [dm6]	T	C	2.260e^-4	0.989	INTRON CG6966	TF binding site mE1_TFBS_Trl
2R	11479209	2R_11479209_SNP [dm3] 2R_15591704_SNP [dm6]	G	A	2.271e^-4	0.989	INTERGENIC
X	21456191	X_21456191_SNP [dm3] X_21585164_SNP [dm6]	A	T	2.273e^-4	0.989	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
2R	19425033	2R_19425033_SNP [dm3] 2R_23537510_SNP [dm6]	C	T	2.277e^-4	0.989	SYNONYMOUS_CODING bw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3932680	2L_3932680_SNP [dm3] 2L_3932680_SNP [dm6]	T	G	2.277e^-4	0.989	INTRON fred
2L	20114288	2L_20114288_SNP [dm3] 2L_20114288_SNP [dm6]	G	A	2.281e^-4	0.989	INTERGENIC
2R	11479133	2R_11479133_SNP [dm3] 2R_15591628_SNP [dm6]	C	G	2.282e^-4	0.989	INTERGENIC
3R	3505945	3R_3505945_SNP [dm3] 3R_7680223_SNP [dm6]	C	T	2.291e^-4	0.989	INTRON Nlg1
3L	6680510	3L_6680510_SNP [dm3] 3L_6687410_SNP [dm6]	G	C	2.297e^-4	0.989	INTERGENIC
2L	7215614	2L_7215614_SNP [dm3] 2L_7215614_SNP [dm6]	T	C	2.315e^-4	0.989	INTRON CG13784
X	4555661	X_4555661_SNP [dm3] X_4661628_SNP [dm6]	C	T	2.318e^-4	0.989	INTRON CG3009	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18143927	2L_18143927_SNP [dm3] 2L_18143927_SNP [dm6]	G	T	2.324e^-4	0.989	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12476945	2R_12476945_SNP [dm3] 2R_16589440_SNP [dm6]	A	T	2.330e^-4	0.989	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	8427306	3R_8427306_SNP [dm3] 3R_12601584_SNP [dm6]	G	T	2.334e^-4	0.989	INTERGENIC
2L	20285290	2L_20285290_SNP [dm3] 2L_20285290_SNP [dm6]	A	T	2.341e^-4	0.989	INTERGENIC
2R	16597637	2R_16597637_SNP [dm3] 2R_20710132_SNP [dm6]	G	T	2.345e^-4	0.989	INTRON dpr
X	15317828	X_15317828_SNP [dm3] X_15423795_SNP [dm6]	G	A	2.351e^-4	0.989	INTRON Cngl
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	2.352e^-4	0.989	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	19223729	2L_19223729_SNP [dm3] 2L_19223729_SNP [dm6]	G	A	2.357e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	12511206	2L_12511206_SNP [dm3] 2L_12511206_SNP [dm6]	G	C	2.371e^-4	0.989	INTRON bun
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	2.375e^-4	0.989	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2R	4271286	2R_4271286_SNP [dm3] 2R_8383781_SNP [dm6]	A	T	2.380e^-4	0.989	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17086474	2R_17086474_SNP [dm3] 2R_21198969_SNP [dm6]	C	T	2.396e^-4	0.989	INTRON Lapsyn
2R	1412861	2R_1412861_SNP [dm3] 2R_5525356_SNP [dm6]	A	C	2.397e^-4	0.989	INTRON CG30438
2L	19929144	2L_19929144_SNP [dm3] 2L_19929144_SNP [dm6]	T	C	2.401e^-4	0.989	INTRON sick
3L	13209909	3L_13209909_SNP [dm3] 3L_13216809_SNP [dm6]	T	A	2.401e^-4	0.989	EXON CR43914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	2.413e^-4	0.989	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	2.416e^-4	0.989	INTERGENIC
3L	10266257	3L_10266257_SNP [dm3] 3L_10273157_SNP [dm6]	T	C	2.417e^-4	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	10559409	X_10559409_SNP [dm3] X_10665376_SNP [dm6]	A	C	2.437e^-4	0.989	INTRON X11Lbeta
2R	12592988	2R_12592988_SNP [dm3] 2R_16705483_SNP [dm6]	T	A	2.440e^-4	0.989	INTRON CG30463	TF binding site mE1_TFBS_chinmo
3L	14479641	3L_14479641_SNP [dm3] 3L_14486541_SNP [dm6]	A	T	2.449e^-4	0.989	INTRON bbg
2R	7400633	2R_7400633_SNP [dm3] 2R_11513128_SNP [dm6]	G	A	2.452e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	14542145	2L_14542145_SNP [dm3] 2L_14542145_SNP [dm6]	G	T	2.463e^-4	0.989	INTERGENIC
2L	12579522	2L_12579522_SNP [dm3] 2L_12579522_SNP [dm6]	T	A	2.464e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	2.470e^-4	0.989	UPSTREAM CG2127 & 1 other INTRON pdm3
3L	8045536	3L_8045536_SNP [dm3] 3L_8052436_SNP [dm6]	A	G	2.485e^-4	0.989	UTR_3_PRIME nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
X	17061777	X_17061777_SNP [dm3] X_17167744_SNP [dm6]	G	T	2.494e^-4	0.989	INTRON baz
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	2.500e^-4	0.989	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3L	18361692	3L_18361692_SNP [dm3] 3L_18368592_SNP [dm6]	T	A	2.507e^-4	0.989	INTERGENIC
3L	3525088	3L_3525088_SNP [dm3] 3L_3525088_SNP [dm6]	T	A	2.519e^-4	0.989	INTRON Eip63E
X	17074394	X_17074394_SNP [dm3] X_17180361_SNP [dm6]	G	A	2.520e^-4	0.989	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	21356334	X_21356334_SNP [dm3] X_21485307_SNP [dm6]	T	C	2.524e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19899342	2L_19899342_SNP [dm3] 2L_19899342_SNP [dm6]	T	C	2.531e^-4	0.989	INTRON sick
2R	20249679	2R_20249679_SNP [dm3] 2R_24362156_SNP [dm6]	T	C	2.535e^-4	0.989	INTRON bs & 1 other
2L	6537988	2L_6537988_SNP [dm3] 2L_6537988_SNP [dm6]	G	C	2.536e^-4	0.989	INTRON eya	TF binding site mE1_TFBS_sens
3L	19644765	3L_19644765_SNP [dm3] 3L_19651665_SNP [dm6]	G	A	2.539e^-4	0.989	NON_SYNONYMOUS_CODING tey	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10366565	2R_10366565_SNP [dm3] 2R_14479060_SNP [dm6]	T	A	2.542e^-4	0.989	INTERGENIC
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	2.553e^-4	0.989	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	2.553e^-4	0.989	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10070238	2L_10070238_SNP [dm3] 2L_10070238_SNP [dm6]	A	G	2.553e^-4	0.989	INTRON CG44153
3R	19232020	3R_19232020_SNP [dm3] 3R_23406298_SNP [dm6]	T	G	2.571e^-4	0.989	SYNONYMOUS_CODING Ir94e
3R	8427307	3R_8427307_SNP [dm3] 3R_12601585_SNP [dm6]	G	T	2.578e^-4	0.989	INTERGENIC
2R	16803794	2R_16803794_INS [dm3] 2R_20916289_INS [dm6]	A	AAA	2.583e^-4	0.989	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	2.590e^-4	0.989	DOWNSTREAM CG13500 INTERGENIC
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	2.590e^-4	0.989	INTERGENIC
2L	7279107	2L_7279107_SNP [dm3] 2L_7279107_SNP [dm6]	G	A	2.591e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_sens
2R	15294398	2R_15294398_SNP [dm3] 2R_19406893_SNP [dm6]	C	A	2.595e^-4	0.989	DOWNSTREAM hts INTRON hts
2R	14432363	2R_14432363_SNP [dm3] 2R_18544858_SNP [dm6]	A	G	2.609e^-4	0.989	SYNONYMOUS_CODING Rgk2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9336802	3L_9336802_SNP [dm3] 3L_9343702_SNP [dm6]	A	T	2.618e^-4	0.989	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	2.630e^-4	0.989	INTRON klg	TF binding site mE1_TFBS_chinmo
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	2.637e^-4	0.989	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	6879604	3L_6879604_SNP [dm3] 3L_6886504_SNP [dm6]	A	G	2.641e^-4	0.989	INTERGENIC
3R	14081131	3R_14081131_SNP [dm3] 3R_18255409_SNP [dm6]	A	C	2.643e^-4	0.989	START_GAINED Ada2a & 1 other UTR_5_PRIME Ada2a & 1 other UPSTREAM moi & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
X	16091223	X_16091223_SNP [dm3] X_16197190_SNP [dm6]	T	C	2.651e^-4	0.989	INTERGENIC
2R	4534970	2R_4534970_SNP [dm3] 2R_8647465_SNP [dm6]	C	T	2.651e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10088520	2L_10088520_SNP [dm3] 2L_10088520_SNP [dm6]	G	A	2.659e^-4	0.989	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19208104	3L_19208104_SNP [dm3] 3L_19215004_SNP [dm6]	A	G	2.671e^-4	0.989	INTRON fz2
3R	18526799	3R_18526799_SNP [dm3] 3R_22701077_SNP [dm6]	T	A	2.679e^-4	0.989	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
3R	18526802	3R_18526802_SNP [dm3] 3R_22701080_SNP [dm6]	T	A	2.679e^-4	0.989	UPSTREAM CG6972 DOWNSTREAM Cyp6d4 INTRON CCAP
2L	14084565	2L_14084565_SNP [dm3] 2L_14084565_SNP [dm6]	C	G	2.679e^-4	0.989	INTRON nAChRalpha5
2L	6712017	2L_6712017_SNP [dm3] 2L_6712017_SNP [dm6]	G	A	2.689e^-4	0.989	UTR_3_PRIME AkhR INTRON AkhR
2R	11588275	2R_11588275_SNP [dm3] 2R_15700770_SNP [dm6]	T	A	2.691e^-4	0.989	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4074691	3L_4074691_SNP [dm3] 3L_4074691_SNP [dm6]	T	C	2.706e^-4	0.989	UTR_3_PRIME Gad1 UPSTREAM Faa
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	2.724e^-4	0.989	UTR_3_PRIME CG17839
X	13171767	X_13171767_SNP [dm3] X_13277734_SNP [dm6]	C	T	2.728e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12908612	3L_12908612_SNP [dm3] 3L_12915512_SNP [dm6]	T	A	2.730e^-4	0.989	INTERGENIC
X	10202232	X_10202232_SNP [dm3] X_10308199_SNP [dm6]	A	G	2.733e^-4	0.989	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	2.734e^-4	0.989	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	3005714	3L_3005714_SNP [dm3] 3L_3005714_SNP [dm6]	G	T	2.734e^-4	0.989	INTRON FMRFaR
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	2.736e^-4	0.989	SYNONYMOUS_CODING Sytalpha
2L	19882198	2L_19882198_SNP [dm3] 2L_19882198_SNP [dm6]	C	G	2.745e^-4	0.989	INTRON sick
3R	25983575	3R_25983575_SNP [dm3] 3R_30157853_SNP [dm6]	G	A	2.745e^-4	0.989	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9590131	2R_9590131_SNP [dm3] 2R_13702626_SNP [dm6]	A	C	2.748e^-4	0.989	INTRON fas
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	2.760e^-4	0.989	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19901820	2L_19901820_SNP [dm3] 2L_19901820_SNP [dm6]	G	T	2.761e^-4	0.989	INTRON sick
3L	16874376	3L_16874376_SNP [dm3] 3L_16881276_SNP [dm6]	T	C	2.764e^-4	0.989	INTRON Lmpt
3L	10266007	3L_10266007_SNP [dm3] 3L_10272907_SNP [dm6]	T	C	2.782e^-4	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	9951944	2R_9951944_SNP [dm3] 2R_14064439_SNP [dm6]	A	C	2.782e^-4	0.989	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12836332	3L_12836332_SNP [dm3] 3L_12843232_SNP [dm6]	A	T	2.786e^-4	0.989	UPSTREAM CG10960 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	8647226	X_8647226_SNP [dm3] X_8753193_SNP [dm6]	C	A	2.796e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13319470	3L_13319470_SNP [dm3] 3L_13326370_SNP [dm6]	A	C	2.799e^-4	0.989	INTERGENIC
3L	3765023	3L_3765023_SNP [dm3] 3L_3765023_SNP [dm6]	G	A	2.806e^-4	0.989	INTRON CG32264
3R	8434001	3R_8434001_SNP [dm3] 3R_12608279_SNP [dm6]	T	C	2.808e^-4	0.989	INTERGENIC
2L	15093739	2L_15093739_SNP [dm3] 2L_15093739_SNP [dm6]	A	T	2.818e^-4	0.989	INTRON CG15270
2R	16473673	2R_16473673_SNP [dm3] 2R_20586168_SNP [dm6]	T	A	2.836e^-4	0.989	UPSTREAM mir-991 & 1 other DOWNSTREAM Nnf1a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11930784	2L_11930784_SNP [dm3] 2L_11930784_SNP [dm6]	C	T	2.854e^-4	0.989	INTERGENIC
2R	12476875	2R_12476875_SNP [dm3] 2R_16589370_SNP [dm6]	C	T	2.862e^-4	0.989	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	7273743	2L_7273743_SNP [dm3] 2L_7273743_SNP [dm6]	A	G	2.868e^-4	0.989	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	10683410	3L_10683410_INS [dm3] 3L_10690310_INS [dm6]	A	AC	2.872e^-4	0.989	UTR_3_PRIME simj UPSTREAM CG11811
3L	14501938	3L_14501938_SNP [dm3] 3L_14508838_SNP [dm6]	T	G	2.878e^-4	0.989	NON_SYNONYMOUS_CODING bbg
2R	7403419	2R_7403419_SNP [dm3] 2R_11515914_SNP [dm6]	T	A	2.880e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	12855801	X_12855801_SNP [dm3] X_12961768_SNP [dm6]	T	C	2.881e^-4	0.989	DOWNSTREAM CG32642 INTERGENIC
3L	10266062	3L_10266062_SNP [dm3] 3L_10272962_SNP [dm6]	A	G	2.884e^-4	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
3L	1604735	3L_1604735_SNP [dm3] 3L_1604735_SNP [dm6]	C	A	2.902e^-4	0.989	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170
3L	9336948	3L_9336948_SNP [dm3] 3L_9343848_SNP [dm6]	C	T	2.903e^-4	0.989	UPSTREAM PGRP-LC INTRON PGRP-LC
3R	22987083	3R_22987083_SNP [dm3] 3R_27161361_SNP [dm6]	A	T	2.915e^-4	0.989	SYNONYMOUS_CODING CG5909
2R	4459588	2R_4459588_SNP [dm3] 2R_8572083_SNP [dm6]	A	G	2.921e^-4	0.989	UTR_3_PRIME Cyp6a13
2L	7273739	2L_7273739_SNP [dm3] 2L_7273739_SNP [dm6]	C	T	2.921e^-4	0.989	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3L	3871908	3L_3871908_SNP [dm3] 3L_3871908_SNP [dm6]	A	G	2.927e^-4	0.989	INTERGENIC
3L	10266234	3L_10266234_SNP [dm3] 3L_10273134_SNP [dm6]	G	A	2.929e^-4	0.989	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
X	3532696	X_3532696_SNP [dm3] X_3638663_SNP [dm6]	T	C	2.932e^-4	0.989	INTRON AstA-R1
3R	8438373	3R_8438373_SNP [dm3] 3R_12612651_SNP [dm6]	T	A	2.947e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	13152430	X_13152430_SNP [dm3] X_13258397_SNP [dm6]	G	A	2.947e^-4	0.989	UTR_5_PRIME CG15742 & 1 other UPSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
3L	8411951	3L_8411951_INS [dm3] 3L_8418851_INS [dm6]	G	GCCAG	2.948e^-4	0.989	INTRON CG32354
2L	19233419	2L_19233419_DEL [dm3] 2L_19233419_DEL [dm6]	TTATTTTATTT...	T	2.951e^-4	0.989	INTERGENIC
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	2.952e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs
2R	16618880	2R_16618880_SNP [dm3] 2R_20731375_SNP [dm6]	G	T	2.957e^-4	0.989	UPSTREAM CG13442 INTRON dpr
3L	4096718	3L_4096718_SNP [dm3] 3L_4096718_SNP [dm6]	C	T	2.957e^-4	0.989	INTRON CG14995	TF binding site mE1_TFBS_cad
2L	12577690	2L_12577690_DEL [dm3] 2L_12577690_DEL [dm6]	AA	A	2.962e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10471210	3L_10471210_SNP [dm3] 3L_10478110_SNP [dm6]	G	C	2.967e^-4	0.989	INTERGENIC
3L	3752181	3L_3752181_SNP [dm3] 3L_3752181_SNP [dm6]	C	T	2.971e^-4	0.989	INTRON CG32264
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	2.971e^-4	0.989	INTERGENIC
3L	3007581	3L_3007581_SNP [dm3] 3L_3007581_SNP [dm6]	A	G	2.971e^-4	0.989	INTRON FMRFaR
2R	7428259	2R_7428259_SNP [dm3] 2R_11540754_SNP [dm6]	G	T	2.988e^-4	0.989	INTERGENIC
2L	19879715	2L_19879715_SNP [dm3] 2L_19879715_SNP [dm6]	A	G	2.991e^-4	0.989	INTRON sick
2R	9712246	2R_9712246_SNP [dm3] 2R_13824741_SNP [dm6]	C	T	3.001e^-4	0.989	UPSTREAM CG13339 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl mE1_TFBS_Ubx
3L	3008225	3L_3008225_SNP [dm3] 3L_3008225_SNP [dm6]	G	A	3.008e^-4	0.989	INTRON FMRFaR
3L	10688826	3L_10688826_SNP [dm3] 3L_10695726_SNP [dm6]	A	G	3.009e^-4	0.989	INTRON NijA
3R	26089889	3R_26089889_SNP [dm3] 3R_30264167_SNP [dm6]	T	G	3.017e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20267129	2L_20267129_SNP [dm3] 2L_20267129_SNP [dm6]	G	T	3.017e^-4	0.989	INTERGENIC
2L	12897453	2L_12897453_SNP [dm3] 2L_12897453_SNP [dm6]	A	T	3.018e^-4	0.989	INTERGENIC
X	18222747	X_18222747_SNP [dm3] X_18328714_SNP [dm6]	A	G	3.042e^-4	0.989	INTRON CG6123
2R	13804692	2R_13804692_SNP [dm3] 2R_17917187_SNP [dm6]	T	G	3.049e^-4	0.989	INTRON Elk
3L	9190781	3L_9190781_SNP [dm3] 3L_9197681_SNP [dm6]	C	A	3.055e^-4	0.989	INTERGENIC
X	13171795	X_13171795_SNP [dm3] X_13277762_SNP [dm6]	C	T	3.056e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	3532686	X_3532686_DEL [dm3] X_3638653_DEL [dm6]	TTGTTT	T	3.070e^-4	0.989	INTRON AstA-R1
X	16878245	X_16878245_SNP [dm3] X_16984212_SNP [dm6]	C	G	3.073e^-4	0.989	INTRON CG45002
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	3.086e^-4	0.989	INTERGENIC
3L	18095220	3L_18095220_DEL [dm3] 3L_18102120_DEL [dm6]	AA	A	3.087e^-4	0.989	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	19913514	2L_19913514_SNP [dm3] 2L_19913514_SNP [dm6]	C	A	3.087e^-4	0.989	START_LOST Victoria INTRON sick
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	3.088e^-4	0.989	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19097702	3R_19097702_SNP [dm3] 3R_23271980_SNP [dm6]	A	C	3.093e^-4	0.989	INTRON orb
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	3.094e^-4	0.989	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	3.099e^-4	0.989	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	3.121e^-4	0.989	INTRON CG31637
X	19722043	X_19722043_SNP [dm3] X_19828010_SNP [dm6]	C	G	3.122e^-4	0.989	INTERGENIC
2L	19949748	2L_19949748_SNP [dm3] 2L_19949748_SNP [dm6]	A	C	3.122e^-4	0.989	INTRON sick	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	1332254	3L_1332254_SNP [dm3] 3L_1332254_SNP [dm6]	C	T	3.123e^-4	0.989	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1332260	3L_1332260_SNP [dm3] 3L_1332260_SNP [dm6]	C	T	3.123e^-4	0.989	UTR_3_PRIME msd1 DOWNSTREAM msd5 & 2 others
3L	1333255	3L_1333255_SNP [dm3] 3L_1333255_SNP [dm6]	T	G	3.123e^-4	0.989	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14360702	2L_14360702_SNP [dm3] 2L_14360702_SNP [dm6]	C	A	3.130e^-4	0.989	NON_SYNONYMOUS_CODING Pgant35A INTRON CR43463 EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13022383	2L_13022383_SNP [dm3] 2L_13022383_SNP [dm6]	C	T	3.136e^-4	0.989	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
3R	10915445	3R_10915445_SNP [dm3] 3R_15089723_SNP [dm6]	G	T	3.137e^-4	0.989	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	14362790	2L_14362790_SNP [dm3] 2L_14362790_SNP [dm6]	A	G	3.151e^-4	0.989	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	13171721	X_13171721_SNP [dm3] X_13277688_SNP [dm6]	A	T	3.156e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	18933705	3R_18933705_SNP [dm3] 3R_23107983_SNP [dm6]	T	C	3.156e^-4	0.989	INTRON CG13830
X	11609597	X_11609597_SNP [dm3] X_11715564_SNP [dm6]	T	C	3.163e^-4	0.989	UTR_5_PRIME Amun UPSTREAM Amun DOWNSTREAM CR45618	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	3601739	X_3601739_SNP [dm3] X_3707706_SNP [dm6]	G	T	3.165e^-4	0.989	INTRON Rala
2R	7403431	2R_7403431_SNP [dm3] 2R_11515926_SNP [dm6]	C	T	3.166e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	21994297	3L_21994297_SNP [dm3] 3L_22001197_SNP [dm6]	A	T	3.171e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	3.174e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10391180	2L_10391180_SNP [dm3] 2L_10391180_SNP [dm6]	C	T	3.183e^-4	0.989	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11922558	3L_11922558_SNP [dm3] 3L_11929458_SNP [dm6]	G	C	3.185e^-4	0.989	INTRON CG44837 & 1 other
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	3.192e^-4	0.989	DOWNSTREAM CR45720 INTERGENIC
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	3.194e^-4	0.989	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16873982	3L_16873982_SNP [dm3] 3L_16880882_SNP [dm6]	T	C	3.198e^-4	0.989	INTRON Lmpt
2L	7276982	2L_7276982_SNP [dm3] 2L_7276982_SNP [dm6]	C	T	3.215e^-4	0.989	UTR_5_PRIME Wnt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	17753196	3R_17753196_SNP [dm3] 3R_21927474_SNP [dm6]	G	A	3.224e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.240e^-4	0.989	INTRON jigr1
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	3.248e^-4	0.989	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7428344	2R_7428344_SNP [dm3] 2R_11540839_SNP [dm6]	T	A	3.251e^-4	0.989	INTERGENIC
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	3.253e^-4	0.989	INTRON jigr1
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	3.260e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	10820484	3L_10820484_SNP [dm3] 3L_10827384_SNP [dm6]	G	A	3.261e^-4	0.989	INTERGENIC
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	3.278e^-4	0.989	INTERGENIC
2L	19875559	2L_19875559_SNP [dm3] 2L_19875559_SNP [dm6]	A	C	3.286e^-4	0.989	INTRON sick	TF binding site mE1_TFBS_cad
2L	19329736	2L_19329736_SNP [dm3] 2L_19329736_SNP [dm6]	T	G	3.296e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5419599	2L_5419599_DEL [dm3] 2L_5419599_DEL [dm6]	GG	G	3.297e^-4	0.989	INTERGENIC
3L	9583678	3L_9583678_SNP [dm3] 3L_9590578_SNP [dm6]	G	C	3.301e^-4	0.989	INTRON CG42673
3L	7101848	3L_7101848_INS [dm3] 3L_7108748_INS [dm6]	A	AAC	3.304e^-4	0.989	INTRON form3
2L	6500252	2L_6500252_SNP [dm3] 2L_6500252_SNP [dm6]	T	A	3.309e^-4	0.989	INTRON CG31637
2L	12257057	2L_12257057_SNP [dm3] 2L_12257057_SNP [dm6]	C	A	3.319e^-4	0.989	INTRON aret
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	3.324e^-4	0.989	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
3L	14501918	3L_14501918_SNP [dm3] 3L_14508818_SNP [dm6]	C	T	3.338e^-4	0.989	SYNONYMOUS_CODING bbg
2L	18126031	2L_18126031_SNP [dm3] 2L_18126031_SNP [dm6]	A	C	3.349e^-4	0.989	UPSTREAM CG31785 INTRON CG5758
3R	14105773	3R_14105773_SNP [dm3] 3R_18280051_SNP [dm6]	C	T	3.350e^-4	0.989	UPSTREAM CG7142 INTRON eIF-1A
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	3.358e^-4	0.989	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
3L	9278667	3L_9278667_SNP [dm3] 3L_9285567_SNP [dm6]	A	G	3.379e^-4	0.989	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3R	4927365	3R_4927365_SNP [dm3] 3R_9101643_SNP [dm6]	C	T	3.386e^-4	0.989	INTRON pum
X	17076670	X_17076670_SNP [dm3] X_17182637_SNP [dm6]	G	C	3.387e^-4	0.989	DOWNSTREAM CR44026 INTRON baz
2L	20285278	2L_20285278_SNP [dm3] 2L_20285278_SNP [dm6]	A	G	3.407e^-4	0.989	INTERGENIC
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	3.415e^-4	0.989	SYNONYMOUS_CODING CG31321
3L	3139134	3L_3139134_SNP [dm3] 3L_3139134_SNP [dm6]	A	G	3.417e^-4	0.989	INTRON CG11537
3R	3324929	3R_3324929_SNP [dm3] 3R_7499207_SNP [dm6]	T	A	3.418e^-4	0.989	INTRON alpha-Est9
X	7887485	X_7887485_SNP [dm3] X_7993452_SNP [dm6]	A	T	3.424e^-4	0.989	INTERGENIC
2L	10392038	2L_10392038_SNP [dm3] 2L_10392038_SNP [dm6]	T	C	3.426e^-4	0.989	SYNONYMOUS_CODING da	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3R	26937186	3R_26937186_SNP [dm3] 3R_31111464_SNP [dm6]	A	T	3.433e^-4	0.989	INTERGENIC
3R	26937197	3R_26937197_SNP [dm3] 3R_31111475_SNP [dm6]	C	T	3.433e^-4	0.989	INTERGENIC
X	18223120	X_18223120_SNP [dm3] X_18329087_SNP [dm6]	G	A	3.436e^-4	0.989	SYNONYMOUS_CODING CG6123
2L	14362763	2L_14362763_SNP [dm3] 2L_14362763_SNP [dm6]	G	A	3.438e^-4	0.989	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14362796	2L_14362796_SNP [dm3] 2L_14362796_SNP [dm6]	A	T	3.444e^-4	0.989	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3752187	3L_3752187_DEL [dm3] 3L_3752187_DEL [dm6]	AG	A	3.446e^-4	0.989	INTRON CG32264
2R	18027463	2R_18027463_DEL [dm3] 2R_22139958_DEL [dm6]	CGTAT	A	3.450e^-4	0.989	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
3R	22504628	3R_22504628_SNP [dm3] 3R_26678906_SNP [dm6]	T	C	3.454e^-4	0.989	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	3.486e^-4	0.989	INTRON CG2082
2R	7257946	2R_7257946_SNP [dm3] 2R_11370441_SNP [dm6]	G	A	3.493e^-4	0.989	UTR_3_PRIME Tapdelta DOWNSTREAM CG13204	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
2R	2618450	2R_2618450_SNP [dm3] 2R_6730945_SNP [dm6]	T	A	3.499e^-4	0.989	NON_SYNONYMOUS_CODING l_2_01289 INTRON l_2_01289
2R	11479199	2R_11479199_MNP [dm3] 2R_15591694_MNP [dm6]	TGA	ATT	3.501e^-4	0.989	INTERGENIC
2L	9936528	2L_9936528_SNP [dm3] 2L_9936528_SNP [dm6]	G	T	3.509e^-4	0.989	UTR_3_PRIME CG31712 UPSTREAM CR45007 INTRON CG31712
X	12378303	X_12378303_SNP [dm3] X_12484270_SNP [dm6]	A	G	3.515e^-4	0.989	INTERGENIC
3R	25317005	3R_25317005_MNP [dm3] 3R_29491283_MNP [dm6]	TTTA	GCAT	3.515e^-4	0.989	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18972604	2L_18972604_SNP [dm3] 2L_18972604_SNP [dm6]	G	A	3.528e^-4	0.989	SPLICE_SITE_REGION CG10639 SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	18972610	2L_18972610_SNP [dm3] 2L_18972610_SNP [dm6]	T	C	3.528e^-4	0.989	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
3L	17177345	3L_17177345_SNP [dm3] 3L_17184245_SNP [dm6]	T	A	3.534e^-4	0.989	INTRON Rbp6
2L	5137908	2L_5137908_SNP [dm3] 2L_5137908_SNP [dm6]	T	G	3.548e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	11479417	2R_11479417_SNP [dm3] 2R_15591912_SNP [dm6]	A	C	3.562e^-4	0.989	INTERGENIC
2R	4294587	2R_4294587_SNP [dm3] 2R_8407082_SNP [dm6]	T	C	3.567e^-4	0.989	INTRON CG2121
3L	1879245	3L_1879245_SNP [dm3] 3L_1879245_SNP [dm6]	C	T	3.573e^-4	0.989	INTRON CG13937
2L	4209391	2L_4209391_SNP [dm3] 2L_4209391_SNP [dm6]	G	T	3.579e^-4	0.989	SPLICE_SITE_REGION ft INTRON ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25110236	3R_25110236_INS [dm3] 3R_29284514_INS [dm6]	T	TT	3.585e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs
2R	1486022	2R_1486022_SNP [dm3] 2R_5598517_SNP [dm6]	G	T	3.589e^-4	0.989	INTERGENIC	transposable element FlyBase
X	11231636	X_11231636_SNP [dm3] X_11337603_SNP [dm6]	C	A	3.592e^-4	0.989	SYNONYMOUS_CODING Kap3
3L	10228078	3L_10228078_DEL [dm3] 3L_10234978_DEL [dm6]	TT	T	3.595e^-4	0.989	INTERGENIC
2L	15056712	2L_15056712_SNP [dm3] 2L_15056712_SNP [dm6]	T	A	3.596e^-4	0.989	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	3.597e^-4	0.989	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	16191910	3R_16191910_DEL [dm3] 3R_20366188_DEL [dm6]	TCAGT	T	3.601e^-4	0.989	INTERGENIC
3L	3139152	3L_3139152_SNP [dm3] 3L_3139152_SNP [dm6]	T	C	3.602e^-4	0.989	INTRON CG11537
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	3.607e^-4	0.989	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	3.621e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	702297	3L_702297_SNP [dm3] 3L_702297_SNP [dm6]	C	T	3.625e^-4	0.989	INTERGENIC
2R	13745476	2R_13745476_SNP [dm3] 2R_17857971_SNP [dm6]	A	T	3.636e^-4	0.989	INTRON olf186-F
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	3.640e^-4	0.989	INTRON Wnt6
X	20409352	X_20409352_SNP [dm3] X_20538325_SNP [dm6]	C	T	3.656e^-4	0.989	UPSTREAM RunxB INTERGENIC
X	17074177	X_17074177_SNP [dm3] X_17180144_SNP [dm6]	T	A	3.664e^-4	0.989	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18972596	2L_18972596_SNP [dm3] 2L_18972596_SNP [dm6]	A	G	3.677e^-4	0.989	SPLICE_SITE_REGION CG10639 DOWNSTREAM Tango6 INTRON CG10639	TF binding site mE1_TFBS_cad
2L	15101246	2L_15101246_SNP [dm3] 2L_15101246_SNP [dm6]	A	G	3.679e^-4	0.989	INTERGENIC
X	22043604	X_22043604_SNP [dm3] X_22641768_SNP [dm6]	A	T	3.681e^-4	0.989	INTERGENIC
3R	1550033	3R_1550033_SNP [dm3] 3R_5724311_SNP [dm6]	A	T	3.685e^-4	0.989	EXON CR44924	TF binding site BDTNP1_TFBS_dl
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	3.689e^-4	0.989	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	3.693e^-4	0.989	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	18063770	2R_18063770_SNP [dm3] 2R_22176265_SNP [dm6]	C	T	3.696e^-4	0.989	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	10914917	3R_10914917_SNP [dm3] 3R_15089195_SNP [dm6]	T	C	3.703e^-4	0.989	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	3.705e^-4	0.989	SYNONYMOUS_CODING Or35a
X	9607935	X_9607935_SNP [dm3] X_9713902_SNP [dm6]	A	G	3.709e^-4	0.989	INTERGENIC
X	20407143	X_20407143_SNP [dm3] X_20536116_SNP [dm6]	C	G	3.724e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5789044	2L_5789044_SNP [dm3] 2L_5789044_SNP [dm6]	G	A	3.730e^-4	0.989	INTRON CG9171	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8670365	3R_8670365_SNP [dm3] 3R_12844643_SNP [dm6]	A	G	3.731e^-4	0.989	INTRON beat-Va
2L	10450442	2L_10450442_DEL [dm3] 2L_10450442_DEL [dm6]	TG	T	3.741e^-4	0.989	DOWNSTREAM loh INTRON ppk10
3L	14419064	3L_14419064_SNP [dm3] 3L_14425964_SNP [dm6]	T	A	3.746e^-4	0.989	INTRON bbg	TF binding site mE1_TFBS_cnc
2R	4271319	2R_4271319_SNP [dm3] 2R_8383814_SNP [dm6]	G	A	3.752e^-4	0.989	INTRON pdm3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9278606	3L_9278606_SNP [dm3] 3L_9285506_SNP [dm6]	C	A	3.757e^-4	0.989	NON_SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
2L	11236285	2L_11236285_SNP [dm3] 2L_11236285_SNP [dm6]	C	G	3.762e^-4	0.989	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	3.764e^-4	0.989	INTRON CG42788
2L	3932709	2L_3932709_SNP [dm3] 2L_3932709_SNP [dm6]	C	A	3.765e^-4	0.989	INTRON fred
3R	25317012	3R_25317012_SNP [dm3] 3R_29491290_SNP [dm6]	T	A	3.771e^-4	0.989	UTR_3_PRIME CG2006 UPSTREAM Spase12 DOWNSTREAM CG2310 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	10683403	3L_10683403_DEL [dm3] 3L_10690303_DEL [dm6]	TT	C	3.772e^-4	0.989	UTR_3_PRIME simj UPSTREAM CG11811 DOWNSTREAM simj
2L	19967109	2L_19967109_SNP [dm3] 2L_19967109_SNP [dm6]	G	C	3.779e^-4	0.989	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad
2L	3932687	2L_3932687_DEL [dm3] 2L_3932687_DEL [dm6]	ATTAAATAAATACTTAA...	A	3.786e^-4	0.989	INTRON fred
3R	14086585	3R_14086585_SNP [dm3] 3R_18260863_SNP [dm6]	T	C	3.790e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	3.793e^-4	0.989	INTRON CG5888
2L	20144075	2L_20144075_SNP [dm3] 2L_20144075_SNP [dm6]	T	C	3.795e^-4	0.989	INTERGENIC
X	16091210	X_16091210_INS [dm3] X_16197177_INS [dm6]	C	CC	3.799e^-4	0.989	INTERGENIC
3L	8667830	3L_8667830_SNP [dm3] 3L_8674730_SNP [dm6]	T	A	3.809e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	3.822e^-4	0.989	INTERGENIC
2R	18768582	2R_18768582_SNP [dm3] 2R_22881059_SNP [dm6]	T	A	3.823e^-4	0.989	UTR_3_PRIME PIP5K59B DOWNSTREAM CG3501
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	3.828e^-4	0.989	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19208103	3L_19208103_SNP [dm3] 3L_19215003_SNP [dm6]	C	A	3.830e^-4	0.989	INTRON fz2
2R	11479213	2R_11479213_DEL [dm3] 2R_15591708_DEL [dm6]	CAAT	A	3.840e^-4	0.989	INTERGENIC
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	3.842e^-4	0.989	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17753586	3R_17753586_SNP [dm3] 3R_21927864_SNP [dm6]	T	C	3.842e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	2893995	3L_2893995_SNP [dm3] 3L_2893995_SNP [dm6]	T	G	3.848e^-4	0.989	INTERGENIC
X	12855669	X_12855669_INS [dm3] X_12961636_INS [dm6]	C	CTATG	3.853e^-4	0.989	DOWNSTREAM CG32642 INTERGENIC
2L	19923610	2L_19923610_INS [dm3] 2L_19923610_INS [dm6]	C	CCAGC	3.859e^-4	0.989	DOWNSTREAM CR43827 INTRON sick
3L	12060803	3L_12060803_SNP [dm3] 3L_12067703_SNP [dm6]	A	T	3.869e^-4	0.989	UTR_3_PRIME Sema-5c
2R	10863807	2R_10863807_SNP [dm3] 2R_14976302_SNP [dm6]	A	G	3.870e^-4	0.989	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10942345	3R_10942345_SNP [dm3] 3R_15116623_SNP [dm6]	T	G	3.885e^-4	0.989	INTRON CG42788	TF binding site mE1_TFBS_sens
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	3.890e^-4	0.989	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	2003024	3L_2003024_SNP [dm3] 3L_2003024_SNP [dm6]	G	A	3.897e^-4	0.989	DOWNSTREAM CG42841 INTERGENIC
X	17074180	X_17074180_SNP [dm3] X_17180147_SNP [dm6]	T	C	3.899e^-4	0.989	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	3.900e^-4	0.989	INTRON hdc
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	3.901e^-4	0.989	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	8140868	2R_8140868_SNP [dm3] 2R_12253363_SNP [dm6]	A	G	3.910e^-4	0.989	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15057803	2L_15057803_SNP [dm3] 2L_15057803_SNP [dm6]	A	C	3.912e^-4	0.989	UTR_5_PRIME ck UPSTREAM CG33679	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7427064	2R_7427064_SNP [dm3] 2R_11539559_SNP [dm6]	C	T	3.913e^-4	0.989	INTERGENIC
3L	1254840	3L_1254840_SNP [dm3] 3L_1254840_SNP [dm6]	C	A	3.922e^-4	0.989	SYNONYMOUS_CODING CG9133 UTR_3_PRIME CG9130	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4074248	3L_4074248_SNP [dm3] 3L_4074248_SNP [dm6]	T	A	3.938e^-4	0.989	UTR_3_PRIME Gad1 UPSTREAM Faa
2L	14360708	2L_14360708_SNP [dm3] 2L_14360708_SNP [dm6]	C	A	3.940e^-4	0.989	SPLICE_SITE_REGION CR43463 SYNONYMOUS_CODING Pgant35A EXON CR43463	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16301581	2R_16301581_SNP [dm3] 2R_20414076_SNP [dm6]	G	T	3.960e^-4	0.989	INTERGENIC
2L	6070775	2L_6070775_SNP [dm3] 2L_6070775_SNP [dm6]	T	G	3.964e^-4	0.989	UPSTREAM Kr-h2 & 1 other DOWNSTREAM CG13993 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	3.965e^-4	0.989	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2L	8700476	2L_8700476_SNP [dm3] 2L_8700476_SNP [dm6]	C	T	3.969e^-4	0.989	UPSTREAM Hnf4 INTRON Hnf4
2R	15294646	2R_15294646_SNP [dm3] 2R_19407141_SNP [dm6]	G	T	3.973e^-4	0.989	NON_SYNONYMOUS_CODING hts INTRON hts
3L	4136314	3L_4136314_SNP [dm3] 3L_4136314_SNP [dm6]	C	T	3.982e^-4	0.989	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3L	2156323	3L_2156323_SNP [dm3] 3L_2156323_SNP [dm6]	T	C	3.984e^-4	0.989	INTRON CG15822
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	3.987e^-4	0.989	INTRON baz
2L	4692693	2L_4692693_SNP [dm3] 2L_4692693_SNP [dm6]	C	T	3.988e^-4	0.989	INTERGENIC
2R	10273767	2R_10273767_SNP [dm3] 2R_14386262_SNP [dm6]	T	C	4.007e^-4	0.989	DOWNSTREAM Dh44-R1 INTERGENIC
2R	7133725	2R_7133725_SNP [dm3] 2R_11246220_SNP [dm6]	T	C	4.020e^-4	0.989	DOWNSTREAM CG34225 EXON CR30029
3R	23862179	3R_23862179_SNP [dm3] 3R_28036457_SNP [dm6]	A	G	4.022e^-4	0.989	INTRON CG34362
X	3224946	X_3224946_SNP [dm3] X_3330913_SNP [dm6]	G	C	4.023e^-4	0.989	INTRON CR44886 & 1 other
3L	12343191	3L_12343191_SNP [dm3] 3L_12350091_SNP [dm6]	G	A	4.023e^-4	0.989	INTRON CrzR
X	8327919	X_8327919_SNP [dm3] X_8433886_SNP [dm6]	C	A	4.026e^-4	0.989	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	4.030e^-4	0.989	INTRON fz
2R	13804485	2R_13804485_SNP [dm3] 2R_17916980_SNP [dm6]	C	G	4.031e^-4	0.989	INTRON Elk
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	4.033e^-4	0.989	INTRON bbg	TF binding site BDTNP1_TFBS_prd
X	7888700	X_7888700_SNP [dm3] X_7994667_SNP [dm6]	G	T	4.039e^-4	0.989	INTERGENIC
2L	5899806	2L_5899806_SNP [dm3] 2L_5899806_SNP [dm6]	C	T	4.046e^-4	0.989	DOWNSTREAM CR44579 INTERGENIC
3L	3752190	3L_3752190_SNP [dm3] 3L_3752190_SNP [dm6]	T	C	4.073e^-4	0.989	INTRON CG32264
3R	10746407	3R_10746407_SNP [dm3] 3R_14920685_SNP [dm6]	T	C	4.075e^-4	0.989	SYNONYMOUS_CODING Sdr
2R	15536757	2R_15536757_DEL [dm3] 2R_19649252_DEL [dm6]	TT	T	4.078e^-4	0.989	INTERGENIC
2R	15536767	2R_15536767_INS [dm3] 2R_19649262_INS [dm6]	T	TA	4.078e^-4	0.989	INTERGENIC
2R	15536810	2R_15536810_SNP [dm3] 2R_19649305_SNP [dm6]	T	A	4.078e^-4	0.989	INTERGENIC
X	3319656	X_3319656_SNP [dm3] X_3425623_SNP [dm6]	A	G	4.078e^-4	0.989	INTRON CR44999 & 1 other
2L	15092021	2L_15092021_SNP [dm3] 2L_15092021_SNP [dm6]	G	A	4.082e^-4	0.989	INTRON CG15270
3R	24095761	3R_24095761_SNP [dm3] 3R_28270039_SNP [dm6]	T	C	4.086e^-4	0.989	INTERGENIC
2L	15502203	2L_15502203_SNP [dm3] 2L_15502203_SNP [dm6]	C	T	4.094e^-4	0.989	SYNONYMOUS_CODING lace	TF binding site mE1_TFBS_sens
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	4.100e^-4	0.989	INTRON Eip63E
3L	9691167	3L_9691167_SNP [dm3] 3L_9698067_SNP [dm6]	G	A	4.103e^-4	0.989	UPSTREAM UbcD4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19175808	2R_19175808_SNP [dm3] 2R_23288285_SNP [dm6]	T	C	4.103e^-4	0.989	INTERGENIC
3R	3506270	3R_3506270_SNP [dm3] 3R_7680548_SNP [dm6]	T	C	4.106e^-4	0.989	INTRON Nlg1
2L	9706703	2L_9706703_SNP [dm3] 2L_9706703_SNP [dm6]	G	T	4.114e^-4	0.989	SYNONYMOUS_CODING pelo UPSTREAM CG31710	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	4395559	2R_4395559_SNP [dm3] 2R_8508054_SNP [dm6]	C	A	4.120e^-4	0.989	INTRON mtt
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	4.124e^-4	0.989	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	4.124e^-4	0.989	INTRON CG9747
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	4.127e^-4	0.989	INTRON CG13698
2L	8348636	2L_8348636_SNP [dm3] 2L_8348636_SNP [dm6]	A	G	4.127e^-4	0.989	INTRON CG7778
X	10511435	X_10511435_SNP [dm3] X_10617402_SNP [dm6]	C	T	4.130e^-4	0.989	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	4.146e^-4	0.989	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10528512	2R_10528512_SNP [dm3] 2R_14641007_SNP [dm6]	T	G	4.150e^-4	0.989	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11072270	2R_11072270_INS [dm3] 2R_15184765_INS [dm6]	G	GCAGACAGATG...	4.155e^-4	0.989	UPSTREAM CG43068 INTRON igl
3R	5761722	3R_5761722_SNP [dm3] 3R_9936000_SNP [dm6]	T	A	4.163e^-4	0.989	INTRON Glut4EF	TF binding site mE1_TFBS_chinmo
3L	6679585	3L_6679585_SNP [dm3] 3L_6686485_SNP [dm6]	T	C	4.166e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_inv
2L	6026212	2L_6026212_SNP [dm3] 2L_6026212_SNP [dm6]	A	G	4.170e^-4	0.989	INTRON CG9109
3R	15098473	3R_15098473_SNP [dm3] 3R_19272751_SNP [dm6]	A	G	4.179e^-4	0.989	INTERGENIC
3L	8667691	3L_8667691_SNP [dm3] 3L_8674591_SNP [dm6]	A	G	4.180e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	4.184e^-4	0.989	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	21470605	3L_21470605_SNP [dm3] 3L_21477505_SNP [dm6]	T	A	4.185e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8066765	2L_8066765_SNP [dm3] 2L_8066765_SNP [dm6]	A	G	4.190e^-4	0.989	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
X	12050368	X_12050368_SNP [dm3] X_12156335_SNP [dm6]	G	A	4.200e^-4	0.989	INTRON Ten-a
3R	21340995	3R_21340995_SNP [dm3] 3R_25515273_SNP [dm6]	G	A	4.202e^-4	0.989	UPSTREAM msi INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	11938229	X_11938229_SNP [dm3] X_12044196_SNP [dm6]	C	T	4.214e^-4	0.989	UTR_5_PRIME Ten-a EXON CR43960
3L	757787	3L_757787_SNP [dm3] 3L_757787_SNP [dm6]	T	G	4.214e^-4	0.989	INTERGENIC
2R	9874410	2R_9874410_SNP [dm3] 2R_13986905_SNP [dm6]	C	G	4.220e^-4	0.989	UTR_3_PRIME RN-tre DOWNSTREAM RN-tre INTRON RN-tre
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	4.226e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5569697	2L_5569697_SNP [dm3] 2L_5569697_SNP [dm6]	G	A	4.236e^-4	0.989	INTERGENIC
2L	7215593	2L_7215593_SNP [dm3] 2L_7215593_SNP [dm6]	A	T	4.238e^-4	0.989	INTRON CG13784
2L	3647577	2L_3647577_SNP [dm3] 2L_3647577_SNP [dm6]	C	T	4.252e^-4	0.989	INTRON for
2L	4238225	2L_4238225_SNP [dm3] 2L_4238225_SNP [dm6]	C	T	4.258e^-4	0.989	INTERGENIC
2L	6038850	2L_6038850_SNP [dm3] 2L_6038850_SNP [dm6]	T	C	4.261e^-4	0.989	SYNONYMOUS_CODING CG31643 UPSTREAM CG9117	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2R	13848979	2R_13848979_SNP [dm3] 2R_17961474_SNP [dm6]	C	A	4.262e^-4	0.989	INTERGENIC
2R	13848980	2R_13848980_SNP [dm3] 2R_17961475_SNP [dm6]	C	T	4.262e^-4	0.989	INTERGENIC
2L	17284750	2L_17284750_SNP [dm3] 2L_17284750_SNP [dm6]	G	C	4.267e^-4	0.989	INTERGENIC
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	4.268e^-4	0.989	INTRON Sema-2b
X	10399301	X_10399301_INS [dm3] X_10505268_INS [dm6]	T	TAGATTTCAAATCAGT...	4.275e^-4	0.989	INTRON spri
2R	17929993	2R_17929993_SNP [dm3] 2R_22042488_SNP [dm6]	C	G	4.283e^-4	0.989	SYNONYMOUS_CODING PpD5
3L	3009007	3L_3009007_SNP [dm3] 3L_3009007_SNP [dm6]	C	T	4.303e^-4	0.989	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	3272472	3R_3272472_SNP [dm3] 3R_7446750_SNP [dm6]	T	C	4.304e^-4	0.989	INTERGENIC
X	16430571	X_16430571_SNP [dm3] X_16536538_SNP [dm6]	C	A	4.305e^-4	0.989	INTERGENIC
2L	5040638	2L_5040638_SNP [dm3] 2L_5040638_SNP [dm6]	C	T	4.321e^-4	0.989	UTR_3_PRIME CG14042 & 1 other DOWNSTREAM CG31650 & 2 others
3L	3009001	3L_3009001_SNP [dm3] 3L_3009001_SNP [dm6]	C	T	4.326e^-4	0.989	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	4.329e^-4	0.989	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	19723176	2L_19723176_SNP [dm3] 2L_19723176_SNP [dm6]	T	G	4.331e^-4	0.989	INTRON Lar
X	4841237	X_4841237_SNP [dm3] X_4947204_SNP [dm6]	T	A	4.331e^-4	0.989	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19597190	2L_19597190_DEL [dm3] 2L_19597190_DEL [dm6]	CGTTGGGTGTCATC...	C	4.341e^-4	0.989	INTRON Lar
3L	10979744	3L_10979744_SNP [dm3] 3L_10986644_SNP [dm6]	T	A	4.347e^-4	0.989	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8285622	2L_8285622_SNP [dm3] 2L_8285622_SNP [dm6]	C	T	4.354e^-4	0.989	INTRON Btk29A
2R	16726936	2R_16726936_SNP [dm3] 2R_20839431_SNP [dm6]	T	C	4.385e^-4	0.989	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19857637	3L_19857637_SNP [dm3] 3L_19864537_SNP [dm6]	A	T	4.390e^-4	0.989	INTERGENIC	transposable element FlyBase
2L	17304331	2L_17304331_SNP [dm3] 2L_17304331_SNP [dm6]	G	A	4.397e^-4	0.989	INTERGENIC
2R	4294723	2R_4294723_SNP [dm3] 2R_8407218_SNP [dm6]	C	A	4.398e^-4	0.989	INTRON CG2121
2R	19193324	2R_19193324_SNP [dm3] 2R_23305801_SNP [dm6]	C	A	4.398e^-4	0.989	INTERGENIC
3L	12999466	3L_12999466_SNP [dm3] 3L_13006366_SNP [dm6]	T	C	4.407e^-4	0.989	UPSTREAM CG11263 INTERGENIC
X	13341797	X_13341797_SNP [dm3] X_13447764_SNP [dm6]	C	T	4.413e^-4	0.989	INTRON Neto
X	8647687	X_8647687_SNP [dm3] X_8753654_SNP [dm6]	C	A	4.414e^-4	0.989	INTERGENIC
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	4.426e^-4	0.989	INTERGENIC
X	21894872	X_21894872_SNP [dm3] X_22493036_SNP [dm6]	T	A	4.434e^-4	0.989	INTRON l_1_G0196
2R	17086470	2R_17086470_SNP [dm3] 2R_21198965_SNP [dm6]	C	A	4.439e^-4	0.989	INTRON Lapsyn
3R	6114066	3R_6114066_SNP [dm3] 3R_10288344_SNP [dm6]	A	G	4.440e^-4	0.989	INTRON CG43143
3R	23995001	3R_23995001_SNP [dm3] 3R_28169279_SNP [dm6]	G	A	4.443e^-4	0.989	INTRON CG34354
2L	13473876	2L_13473876_SNP [dm3] 2L_13473876_SNP [dm6]	T	G	4.451e^-4	0.989	START_GAINED CG42784 UTR_5_PRIME CG42784 INTRON CG42784
X	11975677	X_11975677_SNP [dm3] X_12081644_SNP [dm6]	T	G	4.453e^-4	0.989	INTRON CR43960 & 1 other
3L	10644836	3L_10644836_SNP [dm3] 3L_10651736_SNP [dm6]	G	A	4.455e^-4	0.989	INTRON CG32066
3L	16871389	3L_16871389_SNP [dm3] 3L_16878289_SNP [dm6]	C	T	4.466e^-4	0.989	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_HSA
2R	12080581	2R_12080581_SNP [dm3] 2R_16193076_SNP [dm6]	A	C	4.470e^-4	0.989	UTR_3_PRIME clu DOWNSTREAM calypso	TF binding site mE1_TFBS_cad
3L	6694446	3L_6694446_SNP [dm3] 3L_6701346_SNP [dm6]	T	C	4.473e^-4	0.989	INTRON SP1173
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	4.487e^-4	0.989	INTRON Fili
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	4.495e^-4	0.989	INTRON GABA-B-R1
2R	17147895	2R_17147895_SNP [dm3] 2R_21260390_SNP [dm6]	C	T	4.496e^-4	0.989	INTRON Rgk3
2L	12140639	2L_12140639_SNP [dm3] 2L_12140639_SNP [dm6]	A	T	4.508e^-4	0.989	DOWNSTREAM Gr33a INTERGENIC
2L	13022539	2L_13022539_SNP [dm3] 2L_13022539_SNP [dm6]	T	C	4.511e^-4	0.989	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
2L	3646622	2L_3646622_SNP [dm3] 2L_3646622_SNP [dm6]	C	T	4.517e^-4	0.989	UPSTREAM for INTRON for
3L	3522824	3L_3522824_SNP [dm3] 3L_3522824_SNP [dm6]	C	G	4.520e^-4	0.989	DOWNSTREAM CR45043 INTRON Eip63E
2L	1633946	2L_1633946_SNP [dm3] 2L_1633946_SNP [dm6]	T	C	4.523e^-4	0.989	INTERGENIC
2L	19910559	2L_19910559_SNP [dm3] 2L_19910559_SNP [dm6]	C	A	4.529e^-4	0.989	DOWNSTREAM CR43097 INTRON sick
2R	17086441	2R_17086441_SNP [dm3] 2R_21198936_SNP [dm6]	C	A	4.537e^-4	0.989	INTRON Lapsyn
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	4.541e^-4	0.989	INTERGENIC
3R	8438541	3R_8438541_DEL [dm3] 3R_12612819_DEL [dm6]	GCAGGAGGTG	G	4.546e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	11093961	2L_11093961_SNP [dm3] 2L_11093961_SNP [dm6]	A	G	4.548e^-4	0.989	NON_SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17106305	3L_17106305_SNP [dm3] 3L_17113205_SNP [dm6]	G	T	4.549e^-4	0.989	INTRON Rbp6	TF binding site mE1_TFBS_cad
X	13177139	X_13177139_SNP [dm3] X_13283106_SNP [dm6]	A	C	4.550e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10538188	2R_10538188_SNP [dm3] 2R_14650683_SNP [dm6]	A	T	4.553e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	14711816	3L_14711816_SNP [dm3] 3L_14718716_SNP [dm6]	T	C	4.564e^-4	0.989	INTRON ome
3R	25982969	3R_25982969_SNP [dm3] 3R_30157247_SNP [dm6]	A	G	4.571e^-4	0.989	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	4.584e^-4	0.989	INTRON bbg	TF binding site mE1_TFBS_cnc
2R	20205871	2R_20205871_INS [dm3] 2R_24318348_INS [dm6]	C	CACTGCTC	4.587e^-4	0.989	INTERGENIC
3L	1332931	3L_1332931_SNP [dm3] 3L_1332931_SNP [dm6]	A	C	4.594e^-4	0.989	SYNONYMOUS_CODING msd5 DOWNSTREAM CG2211 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	4.615e^-4	0.989	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10683407	3L_10683407_SNP [dm3] 3L_10690307_SNP [dm6]	C	A	4.617e^-4	0.989	UTR_3_PRIME simj UPSTREAM CG11811
2R	17358757	2R_17358757_SNP [dm3] 2R_21471252_SNP [dm6]	A	G	4.630e^-4	0.989	INTRON Sdc
2L	19923394	2L_19923394_SNP [dm3] 2L_19923394_SNP [dm6]	G	A	4.641e^-4	0.989	INTRON sick EXON CR43827
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	4.645e^-4	0.989	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	4.651e^-4	0.989	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	20596355	2L_20596355_SNP [dm3] 2L_20596355_SNP [dm6]	A	G	4.652e^-4	0.989	INTRON CR44909
3L	12406416	3L_12406416_SNP [dm3] 3L_12413316_SNP [dm6]	T	G	4.654e^-4	0.989	INTRON CG32103
2L	1141786	2L_1141786_INS [dm3] 2L_1141786_INS [dm6]	G	GCTG	4.662e^-4	0.989	DOWNSTREAM CG4577 INTERGENIC
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	4.665e^-4	0.989	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	5451491	2L_5451491_SNP [dm3] 2L_5451491_SNP [dm6]	G	T	4.667e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	4269841	2L_4269841_SNP [dm3] 2L_4269841_SNP [dm6]	G	A	4.668e^-4	0.989	INTERGENIC
3L	9673292	3L_9673292_SNP [dm3] 3L_9680192_SNP [dm6]	C	G	4.684e^-4	0.989	SYNONYMOUS_CODING CG16717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15594579	2L_15594579_SNP [dm3] 2L_15594579_SNP [dm6]	A	G	4.688e^-4	0.989	INTERGENIC
3L	2703614	3L_2703614_SNP [dm3] 3L_2703614_SNP [dm6]	G	A	4.697e^-4	0.989	INTRON Fife
2L	6887954	2L_6887954_SNP [dm3] 2L_6887954_SNP [dm6]	G	A	4.697e^-4	0.989	INTRON Nlg2
3L	14469145	3L_14469145_SNP [dm3] 3L_14476045_SNP [dm6]	T	A	4.703e^-4	0.989	INTRON bbg
X	4836891	X_4836891_SNP [dm3] X_4942858_SNP [dm6]	C	T	4.713e^-4	0.989	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	6870694	2L_6870694_DEL [dm3] 2L_6870694_DEL [dm6]	CCAACTATATAGC...	C	4.720e^-4	0.989	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
X	521432	X_521432_SNP [dm3] X_627399_SNP [dm6]	G	A	4.729e^-4	0.989	UTR_3_PRIME CG17829 DOWNSTREAM RpL36	TF binding site mE1_TFBS_sens
2L	14394964	2L_14394964_SNP [dm3] 2L_14394964_SNP [dm6]	C	T	4.737e^-4	0.989	INTRON elB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	23075274	3L_23075274_DEL [dm3] 3L_23082174_DEL [dm6]	TAATTTTTGAGTAGAAAC...	T	4.746e^-4	0.989	INTERGENIC
2R	13212612	2R_13212612_SNP [dm3] 2R_17325107_SNP [dm6]	C	T	4.748e^-4	0.989	INTRON mbl
2R	15196235	2R_15196235_SNP [dm3] 2R_19308730_SNP [dm6]	G	A	4.752e^-4	0.989	NON_SYNONYMOUS_CODING EndoB INTRON EndoB
3L	10475848	3L_10475848_SNP [dm3] 3L_10482748_SNP [dm6]	A	C	4.763e^-4	0.989	INTRON A2bp1
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	4.765e^-4	0.989	UTR_3_PRIME fas
X	10415761	X_10415761_SNP [dm3] X_10521728_SNP [dm6]	T	C	4.769e^-4	0.989	INTRON spri
3R	8144545	3R_8144545_SNP [dm3] 3R_12318823_SNP [dm6]	C	T	4.772e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19894375	2L_19894375_SNP [dm3] 2L_19894375_SNP [dm6]	G	C	4.773e^-4	0.989	INTRON sick
X	7888874	X_7888874_SNP [dm3] X_7994841_SNP [dm6]	A	C	4.775e^-4	0.989	UPSTREAM Tbh INTERGENIC
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	4.778e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14138911	2R_14138911_SNP [dm3] 2R_18251406_SNP [dm6]	G	A	4.780e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4075926	X_4075926_SNP [dm3] X_4181893_SNP [dm6]	A	C	4.783e^-4	0.989	INTRON Fas2
3L	11094710	3L_11094710_SNP [dm3] 3L_11101610_SNP [dm6]	C	T	4.797e^-4	0.989	SYNONYMOUS_CODING Elo68beta DOWNSTREAM Elo68alpha
2L	5764688	2L_5764688_SNP [dm3] 2L_5764688_SNP [dm6]	A	T	4.813e^-4	0.989	INTRON obst-E
2L	5764692	2L_5764692_DEL [dm3] 2L_5764692_DEL [dm6]	AAT	A	4.813e^-4	0.989	INTRON obst-E
2L	5764696	2L_5764696_SNP [dm3] 2L_5764696_SNP [dm6]	T	A	4.813e^-4	0.989	INTRON obst-E
2L	10089177	2L_10089177_SNP [dm3] 2L_10089177_SNP [dm6]	T	C	4.815e^-4	0.989	INTRON CG44153
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	4.819e^-4	0.989	UPSTREAM Cpr62Bc INTERGENIC
2L	4892641	2L_4892641_SNP [dm3] 2L_4892641_SNP [dm6]	C	A	4.844e^-4	0.989	UPSTREAM CR45716 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17753168	3R_17753168_SNP [dm3] 3R_21927446_SNP [dm6]	C	A	4.850e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	15056723	2L_15056723_SNP [dm3] 2L_15056723_SNP [dm6]	T	C	4.851e^-4	0.989	INTRON ck	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
2L	5138250	2L_5138250_SNP [dm3] 2L_5138250_SNP [dm6]	C	T	4.853e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	13320550	3L_13320550_SNP [dm3] 3L_13327450_SNP [dm6]	T	A	4.861e^-4	0.989	INTERGENIC
3R	20032700	3R_20032700_SNP [dm3] 3R_24206978_SNP [dm6]	T	C	4.866e^-4	0.989	INTRON twin
2R	8140841	2R_8140841_SNP [dm3] 2R_12253336_SNP [dm6]	C	T	4.884e^-4	0.989	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13320528	3L_13320528_SNP [dm3] 3L_13327428_SNP [dm6]	T	C	4.906e^-4	0.989	INTERGENIC
3R	26343016	3R_26343016_SNP [dm3] 3R_30517294_SNP [dm6]	A	G	4.907e^-4	0.989	UTR_3_PRIME jdp DOWNSTREAM CG9698
2R	4940828	2R_4940828_SNP [dm3] 2R_9053323_SNP [dm6]	G	A	4.913e^-4	0.989	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2885027	3L_2885027_SNP [dm3] 3L_2885027_SNP [dm6]	C	T	4.926e^-4	0.989	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12725137	3L_12725137_INS [dm3] 3L_12732037_INS [dm6]	A	GTATTT	4.929e^-4	0.989	INTERGENIC
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	4.929e^-4	0.989	INTERGENIC
2R	10070209	2R_10070209_SNP [dm3] 2R_14182704_SNP [dm6]	T	A	4.930e^-4	0.989	UTR_3_PRIME cg DOWNSTREAM cg
2L	9564582	2L_9564582_SNP [dm3] 2L_9564582_SNP [dm6]	G	A	4.931e^-4	0.989	INTRON jp
X	16979277	X_16979277_SNP [dm3] X_17085244_SNP [dm6]	C	A	4.936e^-4	0.989	NON_SYNONYMOUS_CODING CG8945
2L	14295151	2L_14295151_SNP [dm3] 2L_14295151_SNP [dm6]	T	A	4.940e^-4	0.989	INTRON wb EXON CR43640
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	4.940e^-4	0.989	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	4.942e^-4	0.989	INTERGENIC
3L	16862817	3L_16862817_SNP [dm3] 3L_16869717_SNP [dm6]	T	C	4.952e^-4	0.989	INTRON Lmpt
2L	4692879	2L_4692879_SNP [dm3] 2L_4692879_SNP [dm6]	T	A	4.954e^-4	0.989	INTERGENIC
3L	23075333	3L_23075333_DEL [dm3] 3L_23082233_DEL [dm6]	CCAATTGTA	G	4.964e^-4	0.989	INTERGENIC
3R	12469388	3R_12469388_SNP [dm3] 3R_16643666_SNP [dm6]	T	A	4.968e^-4	0.989	UTR_5_PRIME CG10326 UPSTREAM CG10326 DOWNSTREAM nonA-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2L	15560377	2L_15560377_SNP [dm3] 2L_15560377_SNP [dm6]	T	A	4.970e^-4	0.989	INTRON kek3
2L	20114244	2L_20114244_INS [dm3] 2L_20114244_INS [dm6]	T	TT	4.983e^-4	0.989	INTERGENIC
2R	6560546	2R_6560546_SNP [dm3] 2R_10673041_SNP [dm6]	G	A	4.992e^-4	0.989	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	5.011e^-4	0.989	INTRON dlp	TF binding site BDTNP1_TFBS_dl
X	10516094	X_10516094_SNP [dm3] X_10622061_SNP [dm6]	C	T	5.012e^-4	0.989	DOWNSTREAM Rab9Db INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	5.013e^-4	0.989	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	6940186	X_6940186_SNP [dm3] X_7046153_SNP [dm6]	G	T	5.015e^-4	0.989	INTRON CG12541	TF binding site BDTNP1_TFBS_dl
2L	20315765	2L_20315765_SNP [dm3] 2L_20315765_SNP [dm6]	A	G	5.019e^-4	0.989	DOWNSTREAM CR43606 INTRON spir
2R	19016249	2R_19016249_SNP [dm3] 2R_23128726_SNP [dm6]	T	A	5.020e^-4	0.989	UPSTREAM CR44455 DOWNSTREAM CR44456 INTRON CG3215
2L	17468956	2L_17468956_SNP [dm3] 2L_17468956_SNP [dm6]	G	A	5.026e^-4	0.989	INTRON BicD	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6940165	X_6940165_SNP [dm3] X_7046132_SNP [dm6]	T	C	5.027e^-4	0.989	INTRON CG12541	TF binding site BDTNP1_TFBS_dl
2L	17607741	2L_17607741_SNP [dm3] 2L_17607741_SNP [dm6]	C	T	5.033e^-4	0.989	UPSTREAM CR44412 INTERGENIC
2L	6500065	2L_6500065_INS [dm3] 2L_6500065_INS [dm6]	C	CC	5.038e^-4	0.989	INTRON CG31637
3L	936635	3L_936635_INS [dm3] 3L_936635_INS [dm6]	G	GCATCCG	5.040e^-4	0.989	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	5.049e^-4	0.989	INTERGENIC
2L	5137894	2L_5137894_SNP [dm3] 2L_5137894_SNP [dm6]	T	C	5.056e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	972610	3L_972610_SNP [dm3] 3L_972610_SNP [dm6]	G	C	5.059e^-4	0.989	INTRON Glut1
2L	5613271	2L_5613271_SNP [dm3] 2L_5613271_SNP [dm6]	C	T	5.065e^-4	0.989	INTRON CG14010
3L	16889164	3L_16889164_SNP [dm3] 3L_16896064_SNP [dm6]	T	C	5.084e^-4	0.989	INTRON Lmpt
3L	2960286	3L_2960286_SNP [dm3] 3L_2960286_SNP [dm6]	A	G	5.090e^-4	0.989	NON_SYNONYMOUS_CODING CG34025 DOWNSTREAM Shab
2R	11479202	2R_11479202_SNP [dm3] 2R_15591697_SNP [dm6]	C	A	5.092e^-4	0.989	INTERGENIC
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	5.097e^-4	0.989	INTRON beat-Ib
3L	13320542	3L_13320542_SNP [dm3] 3L_13327442_SNP [dm6]	T	A	5.103e^-4	0.989	INTERGENIC
X	13173739	X_13173739_SNP [dm3] X_13279706_SNP [dm6]	T	C	5.108e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3L	9278604	3L_9278604_SNP [dm3] 3L_9285504_SNP [dm6]	G	C	5.129e^-4	0.989	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
2L	5138295	2L_5138295_SNP [dm3] 2L_5138295_SNP [dm6]	C	T	5.129e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	12896333	2L_12896333_SNP [dm3] 2L_12896333_SNP [dm6]	C	T	5.131e^-4	0.989	INTERGENIC
2R	4807791	2R_4807791_SNP [dm3] 2R_8920286_SNP [dm6]	T	C	5.135e^-4	0.989	START_GAINED CG8248 UTR_5_PRIME CG8248 UTR_3_PRIME Spt
2R	7044667	2R_7044667_SNP [dm3] 2R_11157162_SNP [dm6]	A	T	5.136e^-4	0.989	INTRON CG13229
2R	17424293	2R_17424293_SNP [dm3] 2R_21536788_SNP [dm6]	G	A	5.141e^-4	0.989	START_GAINED CG30286 UTR_5_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15623420	2L_15623420_SNP [dm3] 2L_15623420_SNP [dm6]	G	C	5.142e^-4	0.989	NON_SYNONYMOUS_CODING Or35a
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	5.145e^-4	0.989	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
X	10399304	X_10399304_SNP [dm3] X_10505271_SNP [dm6]	A	T	5.146e^-4	0.989	INTRON spri
X	13172753	X_13172753_SNP [dm3] X_13278720_SNP [dm6]	A	G	5.149e^-4	0.989	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3010402	3L_3010402_SNP [dm3] 3L_3010402_SNP [dm6]	G	A	5.152e^-4	0.989	UTR_3_PRIME FMRFaR
3R	17670394	3R_17670394_SNP [dm3] 3R_21844672_SNP [dm6]	A	G	5.156e^-4	0.989	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
X	17939905	X_17939905_SNP [dm3] X_18045872_SNP [dm6]	A	G	5.179e^-4	0.989	SYNONYMOUS_CODING CG15373 INTRON Sh
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	5.194e^-4	0.989	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14405595	3L_14405595_SNP [dm3] 3L_14412495_SNP [dm6]	C	A	5.200e^-4	0.989	SYNONYMOUS_CODING CG3919 DOWNSTREAM bbg
2R	17962095	2R_17962095_SNP [dm3] 2R_22074590_SNP [dm6]	G	C	5.206e^-4	0.989	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22225924	3R_22225924_SNP [dm3] 3R_26400202_SNP [dm6]	C	T	5.207e^-4	0.989	INTERGENIC
2L	3058741	2L_3058741_SNP [dm3] 2L_3058741_SNP [dm6]	T	C	5.209e^-4	0.989	INTRON CG3523	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	19637775	2L_19637775_DEL [dm3] 2L_19637775_DEL [dm6]	ATAAATAA	A	5.212e^-4	0.989	INTRON Lar
3L	13320536	3L_13320536_SNP [dm3] 3L_13327436_SNP [dm6]	A	T	5.216e^-4	0.989	INTERGENIC
3L	3759387	3L_3759387_SNP [dm3] 3L_3759387_SNP [dm6]	T	C	5.216e^-4	0.989	UPSTREAM CG32264 INTRON CG32264	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18780111	2L_18780111_SNP [dm3] 2L_18780111_SNP [dm6]	G	A	5.221e^-4	0.989	UTR_5_PRIME ham	TF binding site BDTNP1_TFBS_twi
3L	4136331	3L_4136331_SNP [dm3] 3L_4136331_SNP [dm6]	A	T	5.223e^-4	0.989	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3R	20715844	3R_20715844_SNP [dm3] 3R_24890122_SNP [dm6]	A	T	5.225e^-4	0.989	INTRON CG31121
3L	8079901	3L_8079901_SNP [dm3] 3L_8086801_SNP [dm6]	T	C	5.231e^-4	0.989	DOWNSTREAM CG7565 INTRON Ect4
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	5.234e^-4	0.989	INTRON CG44153
2L	19908963	2L_19908963_SNP [dm3] 2L_19908963_SNP [dm6]	C	T	5.235e^-4	0.989	SYNONYMOUS_CODING sick	TF binding site mE1_TFBS_chinmo
2L	19970109	2L_19970109_SNP [dm3] 2L_19970109_SNP [dm6]	C	T	5.237e^-4	0.989	SYNONYMOUS_CODING CG43861 UTR_3_PRIME CG43861	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19392080	3R_19392080_SNP [dm3] 3R_23566358_SNP [dm6]	G	A	5.239e^-4	0.989	INTRON beat-IV
2L	21959468	2L_21959468_SNP [dm3] 2L_21959468_SNP [dm6]	A	G	5.240e^-4	0.989	DOWNSTREAM CR44804 & 1 other INTERGENIC
2R	1897288	2R_1897288_DEL [dm3] 2R_6009783_DEL [dm6]	AATCAAAACA	T	5.244e^-4	0.989	INTRON Src42A
3R	9793675	3R_9793675_SNP [dm3] 3R_13967953_SNP [dm6]	T	C	5.255e^-4	0.989	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
X	5915176	X_5915176_SNP [dm3] X_6021143_SNP [dm6]	T	G	5.261e^-4	0.989	INTERGENIC
3L	15876268	3L_15876268_SNP [dm3] 3L_15883168_SNP [dm6]	G	T	5.265e^-4	0.989	INTRON pHCl
3L	1260057	3L_1260057_SNP [dm3] 3L_1260057_SNP [dm6]	T	C	5.290e^-4	0.989	INTRON CG9134
3L	14336607	3L_14336607_SNP [dm3] 3L_14343507_SNP [dm6]	C	T	5.290e^-4	0.989	INTRON fz
2L	3647081	2L_3647081_SNP [dm3] 2L_3647081_SNP [dm6]	G	A	5.291e^-4	0.989	UPSTREAM for INTRON for
X	11074231	X_11074231_SNP [dm3] X_11180198_SNP [dm6]	G	A	5.292e^-4	0.989	INTERGENIC
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	5.292e^-4	0.989	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3L	8667670	3L_8667670_SNP [dm3] 3L_8674570_SNP [dm6]	A	G	5.297e^-4	0.989	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	19923798	3R_19923798_SNP [dm3] 3R_24098076_SNP [dm6]	T	A	5.304e^-4	0.989	INTRON 4EHP
2L	18079825	2L_18079825_SNP [dm3] 2L_18079825_SNP [dm6]	T	A	5.306e^-4	0.989	INTRON Arr1
3L	3261873	3L_3261873_SNP [dm3] 3L_3261873_SNP [dm6]	A	T	5.307e^-4	0.989	INTRON ckd
2L	7273783	2L_7273783_SNP [dm3] 2L_7273783_SNP [dm6]	T	C	5.310e^-4	0.989	INTRON Wnt4	TF binding site mE1_TFBS_HSA
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	5.315e^-4	0.989	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3R	6909248	3R_6909248_DEL [dm3] 3R_11083526_DEL [dm6]	ACG	A	5.316e^-4	0.989	DOWNSTREAM CR44940 INTERGENIC
X	13574348	X_13574348_SNP [dm3] X_13680315_SNP [dm6]	T	C	5.323e^-4	0.989	START_GAINED CG12177 UTR_5_PRIME CG12177 UPSTREAM CG12177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10016286	X_10016286_SNP [dm3] X_10122253_SNP [dm6]	T	C	5.328e^-4	0.989	SYNONYMOUS_CODING RhoU INTRON CR44894 EXON CR44894
2L	6538428	2L_6538428_SNP [dm3] 2L_6538428_SNP [dm6]	C	T	5.335e^-4	0.989	INTRON eya
2R	11479389	2R_11479389_SNP [dm3] 2R_15591884_SNP [dm6]	C	G	5.342e^-4	0.989	INTERGENIC
X	7303913	X_7303913_SNP [dm3] X_7409880_SNP [dm6]	C	A	5.357e^-4	0.989	INTERGENIC
X	4836549	X_4836549_SNP [dm3] X_4942516_SNP [dm6]	A	G	5.363e^-4	0.989	INTRON Ptp4E
3R	25320540	3R_25320540_SNP [dm3] 3R_29494818_SNP [dm6]	G	A	5.367e^-4	0.989	UTR_5_PRIME CG2010 DOWNSTREAM Diedel
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	5.367e^-4	0.989	INTERGENIC
2L	3642274	2L_3642274_SNP [dm3] 2L_3642274_SNP [dm6]	G	A	5.370e^-4	0.989	INTRON for	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	5.395e^-4	0.989	INTRON CG6225
3L	1673659	3L_1673659_SNP [dm3] 3L_1673659_SNP [dm6]	G	A	5.398e^-4	0.989	UPSTREAM CG13930 INTERGENIC
3R	18532199	3R_18532199_SNP [dm3] 3R_22706477_SNP [dm6]	C	A	5.408e^-4	0.989	SYNONYMOUS_CODING CG13842
3L	8998076	3L_8998076_SNP [dm3] 3L_9004976_SNP [dm6]	A	G	5.411e^-4	0.989	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7399854	2R_7399854_SNP [dm3] 2R_11512349_SNP [dm6]	C	T	5.415e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19867665	2L_19867665_SNP [dm3] 2L_19867665_SNP [dm6]	G	C	5.416e^-4	0.989	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	8557315	X_8557315_SNP [dm3] X_8663282_SNP [dm6]	A	G	5.419e^-4	0.989	INTERGENIC
2L	19912411	2L_19912411_SNP [dm3] 2L_19912411_SNP [dm6]	C	A	5.428e^-4	0.989	UPSTREAM CR43097 & 1 other DOWNSTREAM Victoria INTRON sick
3R	26004843	3R_26004843_SNP [dm3] 3R_30179121_SNP [dm6]	G	A	5.433e^-4	0.989	SYNONYMOUS_CODING CG15530	TF binding site mE1_TFBS_chinmo
3L	14525216	3L_14525216_DEL [dm3] 3L_14532116_DEL [dm6]	CT	C	5.434e^-4	0.989	INTRON bbg
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	5.445e^-4	0.989	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2L	19901774	2L_19901774_SNP [dm3] 2L_19901774_SNP [dm6]	A	C	5.446e^-4	0.989	INTRON sick
2L	11496722	2L_11496722_SNP [dm3] 2L_11496722_SNP [dm6]	C	T	5.448e^-4	0.989	DOWNSTREAM CG6488 INTERGENIC
X	2776564	X_2776564_SNP [dm3] X_2882531_SNP [dm6]	G	T	5.464e^-4	0.989	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	9951537	2L_9951537_SNP [dm3] 2L_9951537_SNP [dm6]	C	G	5.477e^-4	0.989	DOWNSTREAM CG13126 INTERGENIC
2L	6494856	2L_6494856_SNP [dm3] 2L_6494856_SNP [dm6]	A	G	5.486e^-4	0.989	UPSTREAM CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	5.492e^-4	0.989	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3L	1068616	3L_1068616_SNP [dm3] 3L_1068616_SNP [dm6]	C	T	5.504e^-4	0.989	INTRON bab1
3L	2378922	3L_2378922_SNP [dm3] 3L_2378922_SNP [dm6]	C	G	5.518e^-4	0.989	START_GAINED CG45186 UTR_5_PRIME CG45186 INTRON CG45186
2L	15561844	2L_15561844_SNP [dm3] 2L_15561844_SNP [dm6]	C	T	5.518e^-4	0.989	INTRON kek3
2R	5797237	2R_5797237_SNP [dm3] 2R_9909732_SNP [dm6]	C	T	5.522e^-4	0.989	SYNONYMOUS_CODING FMRFa	TF binding site mE1_TFBS_chinmo
2R	13042143	2R_13042143_SNP [dm3] 2R_17154638_SNP [dm6]	T	C	5.524e^-4	0.989	UTR_5_PRIME CG17290 UPSTREAM CG17290
2R	15196064	2R_15196064_SNP [dm3] 2R_19308559_SNP [dm6]	G	A	5.531e^-4	0.989	INTRON EndoB
3L	3719940	3L_3719940_SNP [dm3] 3L_3719940_SNP [dm6]	G	A	5.539e^-4	0.989	INTRON CG32264
2R	17319746	2R_17319746_SNP [dm3] 2R_21432241_SNP [dm6]	G	C	5.551e^-4	0.989	INTRON Sdc
2L	5626226	2L_5626226_DEL [dm3] 2L_5626226_DEL [dm6]	AA	A	5.582e^-4	0.989	DOWNSTREAM CG31646 INTERGENIC
3L	12725134	3L_12725134_SNP [dm3] 3L_12732034_SNP [dm6]	C	A	5.598e^-4	0.989	INTERGENIC
2R	10911788	2R_10911788_SNP [dm3] 2R_15024283_SNP [dm6]	C	A	5.599e^-4	0.989	UPSTREAM CR45256 DOWNSTREAM Obp51a INTRON hbs
2R	7047969	2R_7047969_SNP [dm3] 2R_11160464_SNP [dm6]	T	G	5.606e^-4	0.989	INTRON shn & 1 other
3R	12480626	3R_12480626_SNP [dm3] 3R_16654904_SNP [dm6]	T	A	5.611e^-4	0.989	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	10905465	X_10905465_SNP [dm3] X_11011432_SNP [dm6]	T	C	5.612e^-4	0.989	INTRON CG42339	TF binding site mE1_TFBS_HSA
3L	13218538	3L_13218538_SNP [dm3] 3L_13225438_SNP [dm6]	C	A	5.620e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
3L	14763152	3L_14763152_SNP [dm3] 3L_14770052_SNP [dm6]	A	G	5.639e^-4	0.989	SYNONYMOUS_CODING mop UPSTREAM CG17173
X	2933049	X_2933049_SNP [dm3] X_3039016_SNP [dm6]	A	T	5.644e^-4	0.989	INTRON kirre
2L	20255829	2L_20255829_DEL [dm3] 2L_20255829_DEL [dm6]	GTT	G	5.649e^-4	0.989	DOWNSTREAM CG17571 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	12577700	2L_12577700_SNP [dm3] 2L_12577700_SNP [dm6]	T	C	5.656e^-4	0.989	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	5.660e^-4	0.989	INTRON beat-Ib
2L	19551934	2L_19551934_SNP [dm3] 2L_19551934_SNP [dm6]	C	T	5.661e^-4	0.989	SYNONYMOUS_CODING Tep4	TF binding site mE1_TFBS_HSA
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	5.663e^-4	0.989	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	5.688e^-4	0.989	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	5759821	2L_5759821_SNP [dm3] 2L_5759821_SNP [dm6]	A	T	5.688e^-4	0.989	UTR_3_PRIME CG11030
X	17071692	X_17071692_SNP [dm3] X_17177659_SNP [dm6]	G	T	5.689e^-4	0.989	START_GAINED baz UTR_5_PRIME baz INTRON baz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2R	17437306	2R_17437306_SNP [dm3] 2R_21549801_SNP [dm6]	A	C	5.696e^-4	0.989	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	10089137	2L_10089137_INS [dm3] 2L_10089137_INS [dm6]	T	TCTGTTAGTAAAATAGAGAG...	5.702e^-4	0.989	INTRON CG44153
3L	3634305	3L_3634305_SNP [dm3] 3L_3634305_SNP [dm6]	T	C	5.705e^-4	0.989	INTRON dar1	TF binding site mE1_TFBS_HSA
2R	10071284	2R_10071284_SNP [dm3] 2R_14183779_SNP [dm6]	C	A	5.715e^-4	0.989	DOWNSTREAM cg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10071313	2R_10071313_SNP [dm3] 2R_14183808_SNP [dm6]	T	A	5.715e^-4	0.989	DOWNSTREAM cg INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19923642	2L_19923642_SNP [dm3] 2L_19923642_SNP [dm6]	A	T	5.717e^-4	0.989	DOWNSTREAM CR43827 INTRON sick
3L	3750595	3L_3750595_DEL [dm3] 3L_3750595_DEL [dm6]	TA	T	5.721e^-4	0.989	INTRON CG32264
2L	18125340	2L_18125340_SNP [dm3] 2L_18125340_SNP [dm6]	G	T	5.727e^-4	0.989	NON_SYNONYMOUS_CODING CG31785 INTRON CG5758
2R	11828827	2R_11828827_SNP [dm3] 2R_15941322_SNP [dm6]	G	A	5.728e^-4	0.989	SYNONYMOUS_CODING CG8299	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14419024	3L_14419024_SNP [dm3] 3L_14425924_SNP [dm6]	C	G	5.748e^-4	0.989	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	12645926	3L_12645926_SNP [dm3] 3L_12652826_SNP [dm6]	C	T	5.753e^-4	0.989	INTRON CR43431	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14564892	3L_14564892_SNP [dm3] 3L_14571792_SNP [dm6]	A	C	5.761e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1361529	3L_1361529_SNP [dm3] 3L_1361529_SNP [dm6]	T	A	5.774e^-4	0.989	INTRON Ptp61F
X	17265226	X_17265226_INS [dm3] X_17371193_INS [dm6]	A	AA	5.780e^-4	0.989	INTERGENIC
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	5.783e^-4	0.989	UTR_3_PRIME CG17129
3L	2530677	3L_2530677_SNP [dm3] 3L_2530677_SNP [dm6]	G	A	5.787e^-4	0.989	INTRON Spn	TF binding site mE1_TFBS_bab1
2L	621392	2L_621392_SNP [dm3] 2L_621392_SNP [dm6]	T	G	5.804e^-4	0.989	UPSTREAM lectin-21Cb INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	22002879	2L_22002879_INS [dm3] 2L_22002879_INS [dm6]	A	AGTTTCCTTGCCCACTATTA...	5.806e^-4	0.989	INTERGENIC	transposable element FlyBase
3L	12390333	3L_12390333_SNP [dm3] 3L_12397233_SNP [dm6]	G	A	5.809e^-4	0.989	SYNONYMOUS_CODING CG32104 DOWNSTREAM Obp69a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3535629	X_3535629_SNP [dm3] X_3641596_SNP [dm6]	A	G	5.815e^-4	0.989	INTRON AstA-R1
3R	10926676	3R_10926676_SNP [dm3] 3R_15100954_SNP [dm6]	T	C	5.824e^-4	0.989	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5040144	2L_5040144_SNP [dm3] 2L_5040144_SNP [dm6]	A	T	5.828e^-4	0.989	NON_SYNONYMOUS_CODING SP555 UTR_3_PRIME CG14042 & 1 other DOWNSTREAM CG31650	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5040145	2L_5040145_SNP [dm3] 2L_5040145_SNP [dm6]	T	C	5.828e^-4	0.989	NON_SYNONYMOUS_CODING SP555 UTR_3_PRIME CG14042 & 1 other DOWNSTREAM CG31650	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19911969	2L_19911969_SNP [dm3] 2L_19911969_SNP [dm6]	C	G	5.831e^-4	0.989	NON_SYNONYMOUS_CODING TotF UPSTREAM CR43097 DOWNSTREAM Victoria INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4278240	2L_4278240_SNP [dm3] 2L_4278240_SNP [dm6]	A	G	5.833e^-4	0.989	SYNONYMOUS_CODING Art2
3R	21611865	3R_21611865_INS [dm3] 3R_25786143_INS [dm6]	A	AAA	5.833e^-4	0.989	DOWNSTREAM CG4960 INTERGENIC
3R	20282294	3R_20282294_SNP [dm3] 3R_24456572_SNP [dm6]	C	T	5.836e^-4	0.989	UTR_5_PRIME nAChRalpha1
3L	15307688	3L_15307688_INS [dm3] 3L_15314588_INS [dm6]	T	TG	5.838e^-4	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
2R	9270798	2R_9270798_SNP [dm3] 2R_13383293_SNP [dm6]	T	G	5.846e^-4	0.989	INTERGENIC
2L	19316424	2L_19316424_SNP [dm3] 2L_19316424_SNP [dm6]	A	C	5.862e^-4	0.989	INTERGENIC
3R	12480627	3R_12480627_SNP [dm3] 3R_16654905_SNP [dm6]	T	C	5.864e^-4	0.989	INTRON modSP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	21867110	X_21867110_SNP [dm3] X_22465274_SNP [dm6]	A	G	5.864e^-4	0.989	NON_SYNONYMOUS_CODING CG14619 INTRON CG14619
2R	1137598	2R_1137598_SNP [dm3] 2R_5250093_SNP [dm6]	C	G	5.868e^-4	0.989	INTRON Nipped-A
X	17076105	X_17076105_SNP [dm3] X_17182072_SNP [dm6]	G	C	5.871e^-4	0.989	DOWNSTREAM CR44026 INTRON baz	TF binding site mE1_TFBS_HSA
X	7883603	X_7883603_SNP [dm3] X_7989570_SNP [dm6]	A	T	5.877e^-4	0.989	INTERGENIC
2R	7133731	2R_7133731_SNP [dm3] 2R_11246226_SNP [dm6]	C	A	5.881e^-4	0.989	DOWNSTREAM CG34225 EXON CR30029
3R	17764598	3R_17764598_DEL [dm3] 3R_21938876_DEL [dm6]	GGAGGGGG	G	5.887e^-4	0.989	INTERGENIC
3L	2474551	3L_2474551_SNP [dm3] 3L_2474551_SNP [dm6]	G	A	5.893e^-4	0.989	DOWNSTREAM CG16762 INTRON CG45186
2L	12227685	2L_12227685_SNP [dm3] 2L_12227685_SNP [dm6]	C	T	5.895e^-4	0.989	INTRON aret
3R	17670451	3R_17670451_SNP [dm3] 3R_21844729_SNP [dm6]	T	G	5.901e^-4	0.989	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
2R	8140876	2R_8140876_SNP [dm3] 2R_12253371_SNP [dm6]	A	G	5.901e^-4	0.989	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4836642	X_4836642_SNP [dm3] X_4942609_SNP [dm6]	C	T	5.908e^-4	0.989	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
3R	16759559	3R_16759559_SNP [dm3] 3R_20933837_SNP [dm6]	A	C	5.919e^-4	0.989	INTRON CG31191
2L	5138319	2L_5138319_SNP [dm3] 2L_5138319_SNP [dm6]	G	C	5.926e^-4	0.989	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	15058292	2L_15058292_SNP [dm3] 2L_15058292_SNP [dm6]	T	A	5.936e^-4	0.989	UPSTREAM CG33679 & 1 other DOWNSTREAM TfIIS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	16196942	3R_16196942_SNP [dm3] 3R_20371220_SNP [dm6]	T	A	5.942e^-4	0.989	INTERGENIC

By genomic position
Variant impact
Gene name

Tarsus_Length_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results