DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.114e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09733

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.0317	0.0808

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1920 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.311e^-6	0.91	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	1.752e^-6	0.91	INTRON caps
2L	5154991	2L_5154991_SNP [dm3] 2L_5154991_SNP [dm6]	A	C	1.976e^-6	0.91	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	3.236e^-6	0.91	INTRON spg
3L	972610	3L_972610_SNP [dm3] 3L_972610_SNP [dm6]	G	C	3.495e^-6	0.91	INTRON Glut1
3L	23075298	3L_23075298_DEL [dm3] 3L_23082198_DEL [dm6]	TTTTA	T	4.339e^-6	0.91	INTERGENIC
2R	14947167	2R_14947167_SNP [dm3] 2R_19059662_SNP [dm6]	T	G	4.409e^-6	0.91	START_GAINED CG15109 UTR_5_PRIME CG15109 INTRON CG15109
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	5.552e^-6	0.91	DOWNSTREAM CG3982 INTRON CG3967
2R	12090533	2R_12090533_SNP [dm3] 2R_16203028_SNP [dm6]	G	T	7.275e^-6	0.91	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	8.034e^-6	0.91	INTRON klg	TF binding site mE1_TFBS_chinmo
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	9.137e^-6	0.91	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	9.153e^-6	0.91	INTRON rgn
3L	23075306	3L_23075306_DEL [dm3] 3L_23082206_DEL [dm6]	CCATGCTGACCCGAGAACTT...	C	9.614e^-6	0.91	INTERGENIC
3L	14525216	3L_14525216_DEL [dm3] 3L_14532116_DEL [dm6]	CT	C	1.008e^-5	0.91	INTRON bbg
3L	14637671	3L_14637671_SNP [dm3] 3L_14644571_SNP [dm6]	A	T	1.035e^-5	0.91	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	16408879	3L_16408879_SNP [dm3] 3L_16415779_SNP [dm6]	C	T	1.120e^-5	0.91	NON_SYNONYMOUS_CODING CG4573 DOWNSTREAM TMS1
2R	10897837	2R_10897837_SNP [dm3] 2R_15010332_SNP [dm6]	T	G	1.165e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
2L	9014905	2L_9014905_SNP [dm3] 2L_9014905_SNP [dm6]	G	A	1.202e^-5	0.91	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	1.215e^-5	0.91	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	1.278e^-5	0.91	INTRON Dscam2	TF binding site mE1_TFBS_HSA
X	20006044	X_20006044_SNP [dm3] X_20112011_SNP [dm6]	A	C	1.334e^-5	0.91	INTERGENIC
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.381e^-5	0.91	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	15058452	2L_15058452_SNP [dm3] 2L_15058452_SNP [dm6]	A	G	1.397e^-5	0.91	SYNONYMOUS_CODING CG33679 UPSTREAM ck DOWNSTREAM TfIIS	TF binding site BDTNP1_TFBS_dl
2L	2439206	2L_2439206_SNP [dm3] 2L_2439206_SNP [dm6]	T	A	1.512e^-5	0.91	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14419064	3L_14419064_SNP [dm3] 3L_14425964_SNP [dm6]	T	A	1.676e^-5	0.91	INTRON bbg	TF binding site mE1_TFBS_cnc
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	1.691e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5620944	3R_5620944_SNP [dm3] 3R_9795222_SNP [dm6]	A	G	1.775e^-5	0.91	SYNONYMOUS_CODING CG8516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1704255	2R_1704255_SNP [dm3] 2R_5816750_SNP [dm6]	G	A	1.886e^-5	0.91	INTRON dpr12
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	1.903e^-5	0.91	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20005864	X_20005864_INS [dm3] X_20111831_INS [dm6]	C	CCACACTT	1.946e^-5	0.91	INTERGENIC
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	1.991e^-5	0.91	INTERGENIC
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	2.068e^-5	0.91	INTERGENIC
3R	26005430	3R_26005430_SNP [dm3] 3R_30179708_SNP [dm6]	T	C	2.093e^-5	0.91	UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17755586	3R_17755586_SNP [dm3] 3R_21929864_SNP [dm6]	C	A	2.116e^-5	0.91	INTERGENIC
X	20005872	X_20005872_SNP [dm3] X_20111839_SNP [dm6]	C	A	2.175e^-5	0.91	INTERGENIC
3R	17339520	3R_17339520_SNP [dm3] 3R_21513798_SNP [dm6]	A	T	2.347e^-5	0.91	DOWNSTREAM C15 INTERGENIC
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	2.357e^-5	0.91	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	2.373e^-5	0.91	INTERGENIC
3L	10274238	3L_10274238_SNP [dm3] 3L_10281138_SNP [dm6]	G	A	2.381e^-5	0.91	INTERGENIC
X	20005882	X_20005882_SNP [dm3] X_20111849_SNP [dm6]	T	A	2.385e^-5	0.91	INTERGENIC
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	2.460e^-5	0.91	INTRON rgn
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	2.467e^-5	0.91	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	4459588	2R_4459588_SNP [dm3] 2R_8572083_SNP [dm6]	A	G	2.478e^-5	0.91	UTR_3_PRIME Cyp6a13
3L	23075274	3L_23075274_DEL [dm3] 3L_23082174_DEL [dm6]	TAATTTTTGAGTAGAAAC...	T	2.552e^-5	0.91	INTERGENIC
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	2.615e^-5	0.91	INTRON spg
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	2.661e^-5	0.91	INTRON bbg
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	2.727e^-5	0.91	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3632590	3L_3632590_SNP [dm3] 3L_3632590_SNP [dm6]	G	A	2.748e^-5	0.91	INTRON dar1	TF binding site BDTNP1_TFBS_dl
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	2.818e^-5	0.91	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5605808	3R_5605808_SNP [dm3] 3R_9780086_SNP [dm6]	T	C	2.867e^-5	0.91	UTR_5_PRIME CG12947 DOWNSTREAM RpS29 EXON CR31514
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	2.878e^-5	0.91	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3L	19269983	3L_19269983_SNP [dm3] 3L_19276883_SNP [dm6]	A	G	2.904e^-5	0.91	INTRON CG14086
3R	9857151	3R_9857151_SNP [dm3] 3R_14031429_SNP [dm6]	C	T	2.909e^-5	0.91	UTR_3_PRIME Cyp6d5 UPSTREAM CG3061 INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14564886	3L_14564886_SNP [dm3] 3L_14571786_SNP [dm6]	C	A	2.924e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	2.954e^-5	0.91	INTERGENIC
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	3.050e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	23075333	3L_23075333_DEL [dm3] 3L_23082233_DEL [dm6]	CCAATTGTA	G	3.081e^-5	0.91	INTERGENIC
3L	14418922	3L_14418922_SNP [dm3] 3L_14425822_SNP [dm6]	A	T	3.085e^-5	0.91	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	17755607	3R_17755607_SNP [dm3] 3R_21929885_SNP [dm6]	A	G	3.100e^-5	0.91	INTERGENIC
3R	11181100	3R_11181100_SNP [dm3] 3R_15355378_SNP [dm6]	G	A	3.325e^-5	0.91	INTRON Atg4b	TF binding site mE1_TFBS_chinmo
2L	3794225	2L_3794225_SNP [dm3] 2L_3794225_SNP [dm6]	T	C	3.331e^-5	0.91	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA
2R	14625071	2R_14625071_SNP [dm3] 2R_18737566_SNP [dm6]	G	A	3.386e^-5	0.91	UPSTREAM CG33998 INTRON Hs3st-A
X	21456191	X_21456191_SNP [dm3] X_21585164_SNP [dm6]	A	T	3.428e^-5	0.91	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	3.440e^-5	0.91	UTR_3_PRIME CG17839
3L	3632619	3L_3632619_SNP [dm3] 3L_3632619_SNP [dm6]	A	C	3.475e^-5	0.91	INTRON dar1	TF binding site BDTNP1_TFBS_dl
2L	15610070	2L_15610070_SNP [dm3] 2L_15610070_SNP [dm6]	G	C	3.530e^-5	0.91	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	3.551e^-5	0.91	INTRON fzy	TF binding site mE1_TFBS_sens
3R	17755562	3R_17755562_SNP [dm3] 3R_21929840_SNP [dm6]	T	C	3.553e^-5	0.91	INTERGENIC
3R	5565213	3R_5565213_SNP [dm3] 3R_9739491_SNP [dm6]	T	C	3.705e^-5	0.91	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14517375	3L_14517375_SNP [dm3] 3L_14524275_SNP [dm6]	A	T	3.705e^-5	0.91	INTRON bbg
2L	9014482	2L_9014482_SNP [dm3] 2L_9014482_SNP [dm6]	T	C	3.706e^-5	0.91	UPSTREAM Rcd-1r DOWNSTREAM CG13102 INTERGENIC
3L	14515689	3L_14515689_SNP [dm3] 3L_14522589_SNP [dm6]	A	G	3.772e^-5	0.91	UPSTREAM CG4613 INTRON bbg	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	5607387	3R_5607387_SNP [dm3] 3R_9781665_SNP [dm6]	T	A	3.781e^-5	0.91	INTRON CG12947 EXON CR31514	TF binding site mE1_TFBS_chinmo
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	3.834e^-5	0.91	INTRON mam
2R	12090681	2R_12090681_SNP [dm3] 2R_16203176_SNP [dm6]	C	T	3.887e^-5	0.91	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	19547607	2L_19547607_SNP [dm3] 2L_19547607_SNP [dm6]	C	A	3.949e^-5	0.91	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2439088	2L_2439088_SNP [dm3] 2L_2439088_SNP [dm6]	A	C	3.964e^-5	0.91	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	8304555	3L_8304555_SNP [dm3] 3L_8311455_SNP [dm6]	T	C	3.965e^-5	0.91	UPSTREAM CR45409 INTRON CG7185	TF binding site BDTNP1_TFBS_twi
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	4.022e^-5	0.91	DOWNSTREAM CG3982 INTRON CG3967
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	4.171e^-5	0.91	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	4.175e^-5	0.91	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
3R	17782460	3R_17782460_SNP [dm3] 3R_21956738_SNP [dm6]	G	C	4.219e^-5	0.91	INTRON Eip93F
3L	18690056	3L_18690056_SNP [dm3] 3L_18696956_SNP [dm6]	G	A	4.225e^-5	0.91	UTR_3_PRIME Dic4 DOWNSTREAM Dic4
2R	4158945	2R_4158945_SNP [dm3] 2R_8271440_SNP [dm6]	T	G	4.263e^-5	0.91	INTERGENIC
3R	18762524	3R_18762524_SNP [dm3] 3R_22936802_SNP [dm6]	G	A	4.363e^-5	0.91	INTRON klg
3R	9857153	3R_9857153_SNP [dm3] 3R_14031431_SNP [dm6]	T	C	4.370e^-5	0.91	UTR_3_PRIME Cyp6d5 UPSTREAM CG3061 INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	12089503	3L_12089503_SNP [dm3] 3L_12096403_SNP [dm6]	T	A	4.388e^-5	0.91	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	4.416e^-5	0.91	INTRON dlg1	TF binding site mE1_TFBS_HSA
3L	14469124	3L_14469124_SNP [dm3] 3L_14476024_SNP [dm6]	A	G	4.439e^-5	0.91	INTRON bbg
3R	19392080	3R_19392080_SNP [dm3] 3R_23566358_SNP [dm6]	G	A	4.459e^-5	0.91	INTRON beat-IV
3L	5927053	3L_5927053_SNP [dm3] 3L_5933953_SNP [dm6]	G	A	4.469e^-5	0.91	SYNONYMOUS_CODING CG33993
2L	19399080	2L_19399080_SNP [dm3] 2L_19399080_SNP [dm6]	T	A	4.470e^-5	0.91	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14879834	2R_14879834_SNP [dm3] 2R_18992329_SNP [dm6]	G	C	4.539e^-5	0.911	INTRON tn
3R	25635577	3R_25635577_SNP [dm3] 3R_29809855_SNP [dm6]	T	G	4.568e^-5	0.911	INTRON ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	4.629e^-5	0.911	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19231000	3R_19231000_SNP [dm3] 3R_23405278_SNP [dm6]	G	T	4.683e^-5	0.911	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
2L	19547620	2L_19547620_SNP [dm3] 2L_19547620_SNP [dm6]	C	T	4.727e^-5	0.911	UPSTREAM CG10337 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12086728	3L_12086728_SNP [dm3] 3L_12093628_SNP [dm6]	C	T	4.799e^-5	0.911	INTERGENIC
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	4.812e^-5	0.911	INTRON Rbp6
3R	22988459	3R_22988459_SNP [dm3] 3R_27162737_SNP [dm6]	T	C	4.919e^-5	0.911	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	5.008e^-5	0.911	SYNONYMOUS_CODING Or35a
2R	11469133	2R_11469133_SNP [dm3] 2R_15581628_SNP [dm6]	G	C	5.014e^-5	0.911	INTERGENIC
X	20005863	X_20005863_SNP [dm3] X_20111830_SNP [dm6]	A	T	5.017e^-5	0.911	INTERGENIC
3L	14418952	3L_14418952_SNP [dm3] 3L_14425852_SNP [dm6]	C	G	5.175e^-5	0.911	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	5.221e^-5	0.911	INTRON msi
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	5.311e^-5	0.911	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26005348	3R_26005348_SNP [dm3] 3R_30179626_SNP [dm6]	A	T	5.342e^-5	0.911	NON_SYNONYMOUS_CODING CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3R	5565507	3R_5565507_SNP [dm3] 3R_9739785_SNP [dm6]	T	G	5.350e^-5	0.911	UTR_5_PRIME CG12950	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22517885	3R_22517885_DEL [dm3] 3R_26692163_DEL [dm6]	AGCAGGGCAAGGAAA...	A	5.378e^-5	0.911	DOWNSTREAM TwdlQ INTERGENIC
2L	19397229	2L_19397229_SNP [dm3] 2L_19397229_SNP [dm6]	G	T	5.385e^-5	0.911	INTRON CG17544	TF binding site mE1_TFBS_Trl
3R	24085077	3R_24085077_SNP [dm3] 3R_28259355_SNP [dm6]	G	A	5.394e^-5	0.911	INTERGENIC
3R	10915445	3R_10915445_SNP [dm3] 3R_15089723_SNP [dm6]	G	T	5.483e^-5	0.912	INTRON CG6966	TF binding site mE1_TFBS_Trl
3L	23075295	3L_23075295_SNP [dm3] 3L_23082195_SNP [dm6]	A	C	5.497e^-5	0.912	INTERGENIC
3R	17339525	3R_17339525_SNP [dm3] 3R_21513803_SNP [dm6]	A	G	5.617e^-5	0.92	DOWNSTREAM C15 INTERGENIC
3L	16972518	3L_16972518_DEL [dm3] 3L_16979418_DEL [dm6]	CTTTTATTTACATTGGTC...	C	5.646e^-5	0.92	INTRON Exn
3L	763480	3L_763480_SNP [dm3] 3L_763480_SNP [dm6]	T	C	5.747e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	5.785e^-5	0.921	INTRON beat-IV
2R	4300956	2R_4300956_SNP [dm3] 2R_8413451_SNP [dm6]	T	C	5.800e^-5	0.921	INTERGENIC
2L	7215614	2L_7215614_SNP [dm3] 2L_7215614_SNP [dm6]	T	C	5.941e^-5	0.923	INTRON CG13784
3L	14557803	3L_14557803_SNP [dm3] 3L_14564703_SNP [dm6]	G	C	5.952e^-5	0.923	INTERGENIC
3L	9434693	3L_9434693_SNP [dm3] 3L_9441593_SNP [dm6]	C	G	6.010e^-5	0.923	SYNONYMOUS_CODING Nf-YA INTRON Bet3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17339518	3R_17339518_SNP [dm3] 3R_21513796_SNP [dm6]	T	C	6.217e^-5	0.923	DOWNSTREAM C15 INTERGENIC
3L	2153868	3L_2153868_SNP [dm3] 3L_2153868_SNP [dm6]	A	T	6.312e^-5	0.923	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_cad
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	6.331e^-5	0.923	INTRON jigr1
2L	4238225	2L_4238225_SNP [dm3] 2L_4238225_SNP [dm6]	C	T	6.464e^-5	0.923	INTERGENIC
2L	7447884	2L_7447884_SNP [dm3] 2L_7447884_SNP [dm6]	A	T	6.610e^-5	0.923	UTR_5_PRIME santa-maria INTRON santa-maria
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	6.650e^-5	0.923	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	6.683e^-5	0.923	INTRON twin
2R	12647706	2R_12647706_SNP [dm3] 2R_16760201_SNP [dm6]	G	T	6.713e^-5	0.923	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1010482	3L_1010482_SNP [dm3] 3L_1010482_SNP [dm6]	T	C	6.722e^-5	0.923	INTRON trio
3R	21380294	3R_21380294_SNP [dm3] 3R_25554572_SNP [dm6]	C	A	6.725e^-5	0.923	INTRON msi
3L	23075512	3L_23075512_DEL [dm3] 3L_23082412_DEL [dm6]	TTTTTAT	T	6.771e^-5	0.923	INTERGENIC
3R	11181082	3R_11181082_SNP [dm3] 3R_15355360_SNP [dm6]	G	T	6.854e^-5	0.923	SPLICE_SITE_REGION Atg4b INTRON Atg4b
3R	15372458	3R_15372458_SNP [dm3] 3R_19546736_SNP [dm6]	A	T	6.864e^-5	0.923	INTRON Dys
3R	17731692	3R_17731692_SNP [dm3] 3R_21905970_SNP [dm6]	G	T	6.873e^-5	0.923	UTR_3_PRIME CG6678
3L	15278056	3L_15278056_SNP [dm3] 3L_15284956_SNP [dm6]	A	G	6.877e^-5	0.923	INTERGENIC
3L	18628069	3L_18628069_SNP [dm3] 3L_18634969_SNP [dm6]	G	A	6.890e^-5	0.923	INTRON MYPT-75D
3R	20198525	3R_20198525_SNP [dm3] 3R_24372803_SNP [dm6]	C	G	7.099e^-5	0.923	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	968739	3L_968739_SNP [dm3] 3L_968739_SNP [dm6]	G	A	7.124e^-5	0.923	INTRON Glut1
3R	4936737	3R_4936737_SNP [dm3] 3R_9111015_SNP [dm6]	A	T	7.153e^-5	0.923	INTRON pum
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	7.263e^-5	0.923	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	5494787	3R_5494787_SNP [dm3] 3R_9669065_SNP [dm6]	T	C	7.338e^-5	0.923	NON_SYNONYMOUS_CODING CG9492
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	7.501e^-5	0.923	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	7.522e^-5	0.923	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18764372	3R_18764372_SNP [dm3] 3R_22938650_SNP [dm6]	C	G	7.647e^-5	0.923	INTRON klg
X	16794833	X_16794833_SNP [dm3] X_16900800_SNP [dm6]	T	G	7.689e^-5	0.923	DOWNSTREAM CR44754 INTERGENIC
3R	23862179	3R_23862179_SNP [dm3] 3R_28036457_SNP [dm6]	A	G	7.720e^-5	0.923	INTRON CG34362
3R	26005443	3R_26005443_SNP [dm3] 3R_30179721_SNP [dm6]	G	C	7.736e^-5	0.923	UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	3704104	X_3704104_SNP [dm3] X_3810071_SNP [dm6]	C	T	7.811e^-5	0.923	SYNONYMOUS_CODING fd3F	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	15876381	3R_15876381_SNP [dm3] 3R_20050659_SNP [dm6]	G	C	7.883e^-5	0.923	INTRON CG17193
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	7.912e^-5	0.923	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	14516824	3L_14516824_SNP [dm3] 3L_14523724_SNP [dm6]	G	C	8.014e^-5	0.923	INTRON bbg	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	2439113	2L_2439113_SNP [dm3] 2L_2439113_SNP [dm6]	G	A	8.156e^-5	0.923	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3R	21147043	3R_21147043_SNP [dm3] 3R_25321321_SNP [dm6]	T	A	8.157e^-5	0.923	NON_SYNONYMOUS_CODING CG10562
3R	11792561	3R_11792561_SNP [dm3] 3R_15966839_SNP [dm6]	G	A	8.172e^-5	0.923	NON_SYNONYMOUS_CODING Rbf2
3L	14517389	3L_14517389_SNP [dm3] 3L_14524289_SNP [dm6]	C	T	8.184e^-5	0.923	INTRON bbg
3R	21862051	3R_21862051_DEL [dm3] 3R_26036329_DEL [dm6]	TCCGATTATA	T	8.195e^-5	0.923	UPSTREAM E_spl_m7-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23562513	3R_23562513_DEL [dm3] 3R_27736791_DEL [dm6]	CAAGGCC	C	8.239e^-5	0.923	UTR_5_PRIME Ets98B	TF binding site BDTNP1_TFBS_dl
2L	6309366	2L_6309366_SNP [dm3] 2L_6309366_SNP [dm6]	G	T	8.273e^-5	0.923	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	18779591	3R_18779591_SNP [dm3] 3R_22953869_SNP [dm6]	T	C	8.275e^-5	0.923	INTRON klg
2L	16792322	2L_16792322_SNP [dm3] 2L_16792322_SNP [dm6]	T	C	8.302e^-5	0.923	INTRON CG17928
2R	12090481	2R_12090481_SNP [dm3] 2R_16202976_SNP [dm6]	T	A	8.487e^-5	0.923	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3L	12089551	3L_12089551_SNP [dm3] 3L_12096451_SNP [dm6]	C	A	8.645e^-5	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	8.712e^-5	0.923	INTRON hdc
3L	16972444	3L_16972444_SNP [dm3] 3L_16979344_SNP [dm6]	A	T	8.731e^-5	0.923	INTRON Exn
3L	17584342	3L_17584342_INS [dm3] 3L_17591242_INS [dm6]	C	CT	8.748e^-5	0.923	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	26013280	3R_26013280_INS [dm3] 3R_30187558_INS [dm6]	T	TGT	8.829e^-5	0.923	INTRON CG9747
3R	26013311	3R_26013311_SNP [dm3] 3R_30187589_SNP [dm6]	C	T	8.829e^-5	0.923	INTRON CG9747
3L	1333247	3L_1333247_SNP [dm3] 3L_1333247_SNP [dm6]	T	C	8.848e^-5	0.923	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	8.902e^-5	0.923	INTRON jigr1
2R	12647705	2R_12647705_SNP [dm3] 2R_16760200_SNP [dm6]	G	A	8.931e^-5	0.923	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	8.934e^-5	0.923	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3L	18361016	3L_18361016_SNP [dm3] 3L_18367916_SNP [dm6]	A	T	8.989e^-5	0.923	INTERGENIC
2L	7447883	2L_7447883_SNP [dm3] 2L_7447883_SNP [dm6]	T	A	9.181e^-5	0.923	UTR_5_PRIME santa-maria INTRON santa-maria
2R	11737079	2R_11737079_SNP [dm3] 2R_15849574_SNP [dm6]	C	T	9.202e^-5	0.923	UTR_5_PRIME tun
3L	14526940	3L_14526940_SNP [dm3] 3L_14533840_SNP [dm6]	A	G	9.331e^-5	0.923	INTRON bbg
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	9.386e^-5	0.923	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	9029011	2L_9029011_SNP [dm3] 2L_9029011_SNP [dm6]	A	G	9.446e^-5	0.923	INTRON CG9582 & 1 other
3R	24085047	3R_24085047_SNP [dm3] 3R_28259325_SNP [dm6]	C	T	9.463e^-5	0.923	INTERGENIC
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	9.463e^-5	0.923	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
3L	14509182	3L_14509182_SNP [dm3] 3L_14516082_SNP [dm6]	G	T	9.520e^-5	0.923	INTRON bbg
2R	485532	2R_485532_DEL [dm3] 2R_4598027_DEL [dm6]	AA	A	9.547e^-5	0.923	INTRON p120ctn
X	12180231	X_12180231_SNP [dm3] X_12286198_SNP [dm6]	G	A	9.683e^-5	0.923	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	9.722e^-5	0.923	SYNONYMOUS_CODING S-Lap2
3L	14418933	3L_14418933_SNP [dm3] 3L_14425833_SNP [dm6]	T	A	9.793e^-5	0.923	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	14013338	3L_14013338_SNP [dm3] 3L_14020238_SNP [dm6]	A	G	9.908e^-5	0.923	DOWNSTREAM ptip & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	23205571	3L_23205571_SNP [dm3] 3L_23212471_SNP [dm6]	G	T	1.002e^-4	0.923	INTRON nAChRalpha4	transposable element FlyBase
3R	21146864	3R_21146864_SNP [dm3] 3R_25321142_SNP [dm6]	G	A	1.008e^-4	0.923	UTR_3_PRIME CG10562
3L	16861727	3L_16861727_SNP [dm3] 3L_16868627_SNP [dm6]	T	G	1.009e^-4	0.923	INTRON Lmpt
3L	1333248	3L_1333248_SNP [dm3] 3L_1333248_SNP [dm6]	T	C	1.016e^-4	0.923	UTR_3_PRIME CG2211 UPSTREAM msd5 DOWNSTREAM msd1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	1.027e^-4	0.923	INTRON msi
3R	14033998	3R_14033998_DEL [dm3] 3R_18208276_DEL [dm6]	GGCTTATGG	G	1.031e^-4	0.923	UPSTREAM CG44158 INTRON CG7985
3R	14080173	3R_14080173_SNP [dm3] 3R_18254451_SNP [dm6]	A	G	1.037e^-4	0.923	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
2L	8548001	2L_8548001_SNP [dm3] 2L_8548001_SNP [dm6]	C	T	1.040e^-4	0.923	INTRON Sema-1a
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	1.047e^-4	0.923	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4300983	2R_4300983_SNP [dm3] 2R_8413478_SNP [dm6]	C	T	1.051e^-4	0.923	INTERGENIC
3L	14559636	3L_14559636_SNP [dm3] 3L_14566536_SNP [dm6]	G	A	1.053e^-4	0.923	UPSTREAM CG42758 INTERGENIC
3L	14559726	3L_14559726_SNP [dm3] 3L_14566626_SNP [dm6]	T	C	1.053e^-4	0.923	UPSTREAM CG42758 INTERGENIC
X	20006063	X_20006063_SNP [dm3] X_20112030_SNP [dm6]	G	A	1.060e^-4	0.923	INTERGENIC
2L	3616157	2L_3616157_SNP [dm3] 2L_3616157_SNP [dm6]	G	A	1.060e^-4	0.923	UPSTREAM CR44310 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18064629	3R_18064629_SNP [dm3] 3R_22238907_SNP [dm6]	G	A	1.064e^-4	0.923	INTRON SKIP
2R	9951944	2R_9951944_SNP [dm3] 2R_14064439_SNP [dm6]	A	C	1.068e^-4	0.923	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20005862	X_20005862_SNP [dm3] X_20111829_SNP [dm6]	A	G	1.069e^-4	0.923	INTERGENIC
3R	17731411	3R_17731411_SNP [dm3] 3R_21905689_SNP [dm6]	C	G	1.074e^-4	0.923	INTRON CG6678	TF binding site mE1_TFBS_chinmo
2R	14214375	2R_14214375_SNP [dm3] 2R_18326870_SNP [dm6]	A	T	1.076e^-4	0.923	INTRON sbb
2R	17964202	2R_17964202_SNP [dm3] 2R_22076697_SNP [dm6]	T	A	1.083e^-4	0.923	SYNONYMOUS_CODING GlcT-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2589342	2L_2589342_SNP [dm3] 2L_2589342_SNP [dm6]	C	T	1.088e^-4	0.923	INTERGENIC
3L	1745947	3L_1745947_SNP [dm3] 3L_1745947_SNP [dm6]	T	A	1.120e^-4	0.923	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr
3L	14419024	3L_14419024_SNP [dm3] 3L_14425924_SNP [dm6]	C	G	1.123e^-4	0.923	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	4300964	2R_4300964_SNP [dm3] 2R_8413459_SNP [dm6]	C	G	1.125e^-4	0.923	INTERGENIC
3R	1640418	3R_1640418_SNP [dm3] 3R_5814696_SNP [dm6]	T	A	1.127e^-4	0.923	UTR_5_PRIME CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad
3L	1745980	3L_1745980_SNP [dm3] 3L_1745980_SNP [dm6]	A	G	1.130e^-4	0.923	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	13916895	3L_13916895_SNP [dm3] 3L_13923795_SNP [dm6]	T	A	1.134e^-4	0.923	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	16006326	3R_16006326_SNP [dm3] 3R_20180604_SNP [dm6]	G	A	1.135e^-4	0.923	INTERGENIC
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	1.136e^-4	0.923	INTRON hdc
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	1.139e^-4	0.923	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21380217	3R_21380217_SNP [dm3] 3R_25554495_SNP [dm6]	G	A	1.141e^-4	0.923	INTRON msi
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	1.144e^-4	0.923	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13332939	3R_13332939_SNP [dm3] 3R_17507217_SNP [dm6]	A	G	1.148e^-4	0.923	INTERGENIC
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	1.166e^-4	0.923	INTRON beat-Ib
2R	13299315	2R_13299315_SNP [dm3] 2R_17411810_SNP [dm6]	T	G	1.175e^-4	0.923	UPSTREAM Prosalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15444057	2R_15444057_SNP [dm3] 2R_19556552_SNP [dm6]	G	T	1.178e^-4	0.923	INTRON sm
3R	10285569	3R_10285569_SNP [dm3] 3R_14459847_SNP [dm6]	T	A	1.192e^-4	0.923	INTRON cv-c
3R	10285592	3R_10285592_SNP [dm3] 3R_14459870_SNP [dm6]	A	G	1.192e^-4	0.923	INTRON cv-c
2L	7985122	2L_7985122_SNP [dm3] 2L_7985122_SNP [dm6]	G	C	1.192e^-4	0.923	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	1.199e^-4	0.923	INTERGENIC
3R	26009157	3R_26009157_SNP [dm3] 3R_30183435_SNP [dm6]	A	T	1.199e^-4	0.923	DOWNSTREAM CR44262 INTERGENIC
3L	19354200	3L_19354200_SNP [dm3] 3L_19361100_SNP [dm6]	G	T	1.202e^-4	0.923	INTRON CG32206
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	1.204e^-4	0.923	INTRON spir
3R	26611717	3R_26611717_SNP [dm3] 3R_30785995_SNP [dm6]	T	C	1.211e^-4	0.923	INTRON zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	11599335	X_11599335_SNP [dm3] X_11705302_SNP [dm6]	C	G	1.211e^-4	0.923	UPSTREAM CG2444 DOWNSTREAM PhKgamma INTERGENIC	TF binding site mE1_TFBS_cad
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	1.212e^-4	0.923	INTRON nemy
3L	13704840	3L_13704840_DEL [dm3] 3L_13711740_DEL [dm6]	CG	C	1.215e^-4	0.923	INTRON bru-3
X	8470934	X_8470934_SNP [dm3] X_8576901_SNP [dm6]	C	G	1.217e^-4	0.923	INTRON CG12065
2R	10864084	2R_10864084_SNP [dm3] 2R_14976579_SNP [dm6]	A	G	1.236e^-4	0.923	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	1.237e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4159196	2R_4159196_SNP [dm3] 2R_8271691_SNP [dm6]	A	C	1.239e^-4	0.923	INTERGENIC
2L	16232874	2L_16232874_SNP [dm3] 2L_16232874_SNP [dm6]	T	C	1.252e^-4	0.923	INTRON CG42817
3R	18063302	3R_18063302_SNP [dm3] 3R_22237580_SNP [dm6]	C	G	1.255e^-4	0.923	INTRON SKIP
3R	7170103	3R_7170103_SNP [dm3] 3R_11344381_SNP [dm6]	G	A	1.262e^-4	0.923	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	12092452	3L_12092452_SNP [dm3] 3L_12099352_SNP [dm6]	A	G	1.271e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	1.272e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21453694	X_21453694_SNP [dm3] X_21582667_SNP [dm6]	G	C	1.274e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	1.274e^-4	0.923	INTERGENIC
2R	17141082	2R_17141082_SNP [dm3] 2R_21253577_SNP [dm6]	G	A	1.275e^-4	0.923	INTERGENIC
3R	26256456	3R_26256456_SNP [dm3] 3R_30430734_SNP [dm6]	A	G	1.276e^-4	0.923	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
2R	12592988	2R_12592988_SNP [dm3] 2R_16705483_SNP [dm6]	T	A	1.277e^-4	0.923	INTRON CG30463	TF binding site mE1_TFBS_chinmo
3L	816571	3L_816571_INS [dm3] 3L_816571_INS [dm6]	A	ATTTA	1.280e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2776564	X_2776564_SNP [dm3] X_2882531_SNP [dm6]	G	T	1.280e^-4	0.923	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7197266	2L_7197266_SNP [dm3] 2L_7197266_SNP [dm6]	A	G	1.282e^-4	0.923	INTRON CG4502
3L	2159692	3L_2159692_INS [dm3] 3L_2159692_INS [dm6]	C	GA	1.288e^-4	0.923	INTRON CG15822	TF binding site mE1_TFBS_inv
X	3861922	X_3861922_SNP [dm3] X_3967889_SNP [dm6]	A	T	1.289e^-4	0.923	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	1.307e^-4	0.923	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
3L	9082690	3L_9082690_SNP [dm3] 3L_9089590_SNP [dm6]	C	A	1.314e^-4	0.923	NON_SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	1.338e^-4	0.923	INTRON GABA-B-R1
X	20006075	X_20006075_SNP [dm3] X_20112042_SNP [dm6]	T	G	1.343e^-4	0.923	INTERGENIC
X	16400952	X_16400952_SNP [dm3] X_16506919_SNP [dm6]	C	G	1.356e^-4	0.923	INTRON para
2L	16792335	2L_16792335_SNP [dm3] 2L_16792335_SNP [dm6]	T	A	1.357e^-4	0.923	INTRON CG17928
3L	2152481	3L_2152481_SNP [dm3] 3L_2152481_SNP [dm6]	A	C	1.362e^-4	0.923	UPSTREAM zormin DOWNSTREAM CG15822 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	19230159	3R_19230159_SNP [dm3] 3R_23404437_SNP [dm6]	T	C	1.369e^-4	0.923	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
3R	5586888	3R_5586888_SNP [dm3] 3R_9761166_SNP [dm6]	A	C	1.373e^-4	0.923	UTR_3_PRIME CG8417 DOWNSTREAM Snap24
3L	13291952	3L_13291952_SNP [dm3] 3L_13298852_SNP [dm6]	G	T	1.373e^-4	0.923	UTR_3_PRIME CG42481 UPSTREAM CR45255 DOWNSTREAM CR45254 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	1.377e^-4	0.923	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
2R	12090661	2R_12090661_SNP [dm3] 2R_16203156_SNP [dm6]	T	C	1.388e^-4	0.923	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	10400657	2L_10400657_SNP [dm3] 2L_10400657_SNP [dm6]	G	T	1.394e^-4	0.923	SYNONYMOUS_CODING Cnot4
2R	12225110	2R_12225110_SNP [dm3] 2R_16337605_SNP [dm6]	C	A	1.399e^-4	0.923	UPSTREAM Vha44 & 1 other INTRON Hmgs	TF binding site BDTNP1_TFBS_dl
3L	8059361	3L_8059361_SNP [dm3] 3L_8066261_SNP [dm6]	A	G	1.407e^-4	0.923	UPSTREAM tRNA:CR32361 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	1.410e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14469406	3L_14469406_SNP [dm3] 3L_14476306_SNP [dm6]	A	T	1.416e^-4	0.923	INTRON bbg
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	1.416e^-4	0.923	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
2L	17142952	2L_17142952_SNP [dm3] 2L_17142952_SNP [dm6]	T	C	1.419e^-4	0.923	INTRON beat-IIIa & 1 other
3L	4136331	3L_4136331_SNP [dm3] 3L_4136331_SNP [dm6]	A	T	1.421e^-4	0.923	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3L	14511671	3L_14511671_SNP [dm3] 3L_14518571_SNP [dm6]	A	T	1.423e^-4	0.923	DOWNSTREAM CG9592 INTRON bbg
2L	5606517	2L_5606517_DEL [dm3] 2L_5606517_DEL [dm6]	TAT	T	1.424e^-4	0.923	INTRON CG14010
3L	12089928	3L_12089928_SNP [dm3] 3L_12096828_SNP [dm6]	G	C	1.435e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5967597	X_5967597_SNP [dm3] X_6073564_SNP [dm6]	C	A	1.444e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	1.444e^-4	0.923	DOWNSTREAM CG13500 INTERGENIC
X	9215275	X_9215275_SNP [dm3] X_9321242_SNP [dm6]	T	A	1.446e^-4	0.923	SYNONYMOUS_CODING c12.2	TF binding site mE1_TFBS_cad
3L	763489	3L_763489_INS [dm3] 3L_763489_INS [dm6]	T	TTAAT	1.448e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	1.467e^-4	0.923	INTRON beat-Ib
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	1.470e^-4	0.923	UPSTREAM Cpr62Bc INTERGENIC
3R	1586113	3R_1586113_SNP [dm3] 3R_5760391_SNP [dm6]	T	C	1.470e^-4	0.923	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3R	20273584	3R_20273584_SNP [dm3] 3R_24447862_SNP [dm6]	G	C	1.471e^-4	0.923	INTRON nAChRalpha1
3L	12094940	3L_12094940_SNP [dm3] 3L_12101840_SNP [dm6]	T	A	1.483e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2L	6497753	2L_6497753_SNP [dm3] 2L_6497753_SNP [dm6]	T	C	1.499e^-4	0.923	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3R	10032938	3R_10032938_SNP [dm3] 3R_14207216_SNP [dm6]	A	T	1.501e^-4	0.923	INTRON Dop1R1
3L	1748268	3L_1748268_SNP [dm3] 3L_1748268_SNP [dm6]	T	C	1.503e^-4	0.923	UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7984561	2L_7984561_SNP [dm3] 2L_7984561_SNP [dm6]	C	A	1.512e^-4	0.923	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1334340	3L_1334340_SNP [dm3] 3L_1334340_SNP [dm6]	A	T	1.519e^-4	0.923	SYNONYMOUS_CODING CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	15839907	2R_15839907_SNP [dm3] 2R_19952402_SNP [dm6]	T	A	1.522e^-4	0.923	DOWNSTREAM CG10822 INTERGENIC
2L	14009807	2L_14009807_SNP [dm3] 2L_14009807_SNP [dm6]	T	A	1.527e^-4	0.923	DOWNSTREAM CG42692 & 1 other INTERGENIC
2L	4226945	2L_4226945_SNP [dm3] 2L_4226945_SNP [dm6]	C	G	1.529e^-4	0.923	UTR_5_PRIME CG3702 UPSTREAM RpL40	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
X	5967529	X_5967529_SNP [dm3] X_6073496_SNP [dm6]	C	G	1.543e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
3L	18720818	3L_18720818_SNP [dm3] 3L_18727718_SNP [dm6]	C	T	1.547e^-4	0.923	INTERGENIC
3L	12853682	3L_12853682_SNP [dm3] 3L_12860582_SNP [dm6]	C	T	1.558e^-4	0.923	NON_SYNONYMOUS_CODING CG32107
3L	21549601	3L_21549601_SNP [dm3] 3L_21556501_SNP [dm6]	A	G	1.562e^-4	0.923	SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
2R	4158962	2R_4158962_SNP [dm3] 2R_8271457_SNP [dm6]	T	A	1.568e^-4	0.923	INTERGENIC
3R	20273581	3R_20273581_SNP [dm3] 3R_24447859_SNP [dm6]	C	T	1.572e^-4	0.923	INTRON nAChRalpha1
3L	9436421	3L_9436421_INS [dm3] 3L_9443321_INS [dm6]	C	ATT	1.579e^-4	0.923	UTR_5_PRIME CG33926	TF binding site BDTNP1_TFBS_dl
2R	13648047	2R_13648047_INS [dm3] 2R_17760542_INS [dm6]	T	TT	1.580e^-4	0.923	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	3448871	3R_3448871_INS [dm3] 3R_7623149_INS [dm6]	A	AAT	1.583e^-4	0.923	INTRON CG34127	TF binding site mE1_TFBS_inv
3L	14752679	3L_14752679_SNP [dm3] 3L_14759579_SNP [dm6]	G	A	1.591e^-4	0.923	DOWNSTREAM CG33260 INTRON Trl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	10124322	3L_10124322_SNP [dm3] 3L_10131222_SNP [dm6]	C	T	1.596e^-4	0.923	INTRON dpr6
3L	18277060	3L_18277060_SNP [dm3] 3L_18283960_SNP [dm6]	T	G	1.596e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20974308	3R_20974308_SNP [dm3] 3R_25148586_SNP [dm6]	A	T	1.606e^-4	0.923	INTERGENIC
X	21444124	X_21444124_SNP [dm3] X_21573097_SNP [dm6]	T	C	1.613e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	1.624e^-4	0.923	INTERGENIC
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	1.624e^-4	0.923	UPSTREAM CG2127 & 1 other INTRON pdm3
2L	9028967	2L_9028967_SNP [dm3] 2L_9028967_SNP [dm6]	A	G	1.627e^-4	0.923	INTRON CG9582 & 1 other
3R	1679979	3R_1679979_SNP [dm3] 3R_5854257_SNP [dm6]	C	T	1.631e^-4	0.923	UTR_3_PRIME CG34287 INTRON disp
3R	25186780	3R_25186780_SNP [dm3] 3R_29361058_SNP [dm6]	G	C	1.632e^-4	0.923	INTERGENIC
3L	23075622	3L_23075622_DEL [dm3] 3L_23082522_DEL [dm6]	ATACC	A	1.636e^-4	0.923	INTERGENIC
X	6425306	X_6425306_SNP [dm3] X_6531273_SNP [dm6]	G	A	1.665e^-4	0.923	SYNONYMOUS_CODING RpL7A DOWNSTREAM snoRNA:Or-CD10 & 1 other	TF binding site BDTNP1_TFBS_sna
3R	8483118	3R_8483118_SNP [dm3] 3R_12657396_SNP [dm6]	A	G	1.673e^-4	0.923	INTRON CG6225
2R	11907864	2R_11907864_SNP [dm3] 2R_16020359_SNP [dm6]	T	C	1.674e^-4	0.923	INTRON CG8399
3R	8435592	3R_8435592_SNP [dm3] 3R_12609870_SNP [dm6]	A	T	1.675e^-4	0.923	INTERGENIC
3L	14564827	3L_14564827_SNP [dm3] 3L_14571727_SNP [dm6]	G	C	1.686e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1590946	3L_1590946_SNP [dm3] 3L_1590946_SNP [dm6]	G	A	1.694e^-4	0.923	INTRON CG13917
2R	15444068	2R_15444068_SNP [dm3] 2R_19556563_SNP [dm6]	A	G	1.705e^-4	0.923	INTRON sm
3R	19190890	3R_19190890_SNP [dm3] 3R_23365168_SNP [dm6]	T	C	1.707e^-4	0.923	INTERGENIC
2R	14848919	2R_14848919_SNP [dm3] 2R_18961414_SNP [dm6]	T	A	1.715e^-4	0.923	INTERGENIC
3L	4136314	3L_4136314_SNP [dm3] 3L_4136314_SNP [dm6]	C	T	1.715e^-4	0.923	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
2L	19397189	2L_19397189_SNP [dm3] 2L_19397189_SNP [dm6]	G	T	1.736e^-4	0.923	DOWNSTREAM CG31798 INTRON CG17544	TF binding site mE1_TFBS_Trl
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	1.738e^-4	0.923	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	5810862	3L_5810862_SNP [dm3] 3L_5817762_SNP [dm6]	G	T	1.742e^-4	0.923	INTRON vn
3L	3120955	3L_3120955_SNP [dm3] 3L_3120955_SNP [dm6]	C	G	1.744e^-4	0.923	NON_SYNONYMOUS_CODING prominin-like DOWNSTREAM tRNA:CR32273
2L	19398941	2L_19398941_SNP [dm3] 2L_19398941_SNP [dm6]	C	T	1.750e^-4	0.923	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9029008	2L_9029008_SNP [dm3] 2L_9029008_SNP [dm6]	A	C	1.753e^-4	0.923	INTRON CG9582 & 1 other
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.759e^-4	0.923	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	19399242	2L_19399242_SNP [dm3] 2L_19399242_SNP [dm6]	A	G	1.763e^-4	0.923	UPSTREAM CG17544 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15815305	3R_15815305_SNP [dm3] 3R_19989583_SNP [dm6]	A	C	1.767e^-4	0.923	INTRON Hs6st
2L	16311859	2L_16311859_DEL [dm3] 2L_16311859_DEL [dm6]	TT	T	1.767e^-4	0.923	INTRON fzy	TF binding site mE1_TFBS_sens
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	1.770e^-4	0.923	UTR_3_PRIME CG10562
3R	1564743	3R_1564743_SNP [dm3] 3R_5739021_SNP [dm6]	T	G	1.773e^-4	0.923	SYNONYMOUS_CODING Sym	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22049296	3R_22049296_SNP [dm3] 3R_26223574_SNP [dm6]	A	C	1.774e^-4	0.923	INTERGENIC
3L	9079156	3L_9079156_SNP [dm3] 3L_9086056_SNP [dm6]	C	A	1.774e^-4	0.923	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
2R	4164057	2R_4164057_SNP [dm3] 2R_8276552_SNP [dm6]	C	T	1.775e^-4	0.923	UPSTREAM CR44280 INTERGENIC
X	17956015	X_17956015_SNP [dm3] X_18061982_SNP [dm6]	C	T	1.776e^-4	0.923	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	8527124	3R_8527124_SNP [dm3] 3R_12701402_SNP [dm6]	C	T	1.779e^-4	0.923	INTRON Past1
3L	12089537	3L_12089537_SNP [dm3] 3L_12096437_SNP [dm6]	A	G	1.795e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4226989	2L_4226989_SNP [dm3] 2L_4226989_SNP [dm6]	G	C	1.802e^-4	0.923	UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3R	20197946	3R_20197946_SNP [dm3] 3R_24372224_SNP [dm6]	C	G	1.829e^-4	0.923	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20006135	X_20006135_SNP [dm3] X_20112102_SNP [dm6]	C	T	1.830e^-4	0.923	INTERGENIC
3R	14079773	3R_14079773_SNP [dm3] 3R_18254051_SNP [dm6]	A	G	1.834e^-4	0.923	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
3R	6008235	3R_6008235_SNP [dm3] 3R_10182513_SNP [dm6]	C	T	1.858e^-4	0.923	INTRON CG12814
2L	17104662	2L_17104662_SNP [dm3] 2L_17104662_SNP [dm6]	T	A	1.863e^-4	0.923	UPSTREAM CR45448 INTERGENIC
3L	7547232	3L_7547232_SNP [dm3] 3L_7554132_SNP [dm6]	C	G	1.863e^-4	0.923	INTERGENIC
3R	4902426	3R_4902426_SNP [dm3] 3R_9076704_SNP [dm6]	C	G	1.866e^-4	0.923	INTRON pum
2R	10306390	2R_10306390_SNP [dm3] 2R_14418885_SNP [dm6]	A	T	1.867e^-4	0.923	INTERGENIC
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	1.868e^-4	0.923	DOWNSTREAM mthl13 INTRON CG33144
3R	18758942	3R_18758942_SNP [dm3] 3R_22933220_SNP [dm6]	T	A	1.873e^-4	0.923	INTRON klg
3R	18215850	3R_18215850_SNP [dm3] 3R_22390128_SNP [dm6]	C	G	1.878e^-4	0.923	UTR_5_PRIME CG7059 UPSTREAM CG5379 & 1 other INTRON CG7059	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7976241	2L_7976241_SNP [dm3] 2L_7976241_SNP [dm6]	T	A	1.880e^-4	0.923	UTR_5_PRIME Snoo	TF binding site BDTNP1_TFBS_dl
3R	1624873	3R_1624873_SNP [dm3] 3R_5799151_SNP [dm6]	C	T	1.892e^-4	0.923	UTR_3_PRIME CG10979 DOWNSTREAM CG10979
3L	8411951	3L_8411951_INS [dm3] 3L_8418851_INS [dm6]	G	GCCAG	1.898e^-4	0.923	INTRON CG32354
3R	6991476	3R_6991476_SNP [dm3] 3R_11165754_SNP [dm6]	G	T	1.909e^-4	0.923	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3R	17731407	3R_17731407_SNP [dm3] 3R_21905685_SNP [dm6]	G	A	1.916e^-4	0.923	INTRON CG6678	TF binding site mE1_TFBS_chinmo
2R	13648088	2R_13648088_SNP [dm3] 2R_17760583_SNP [dm6]	G	C	1.917e^-4	0.923	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	7989834	2L_7989834_SNP [dm3] 2L_7989834_SNP [dm6]	C	T	1.919e^-4	0.923	INTRON pes	TF binding site mE1_TFBS_inv
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	1.926e^-4	0.923	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	1817499	3L_1817499_SNP [dm3] 3L_1817499_SNP [dm6]	T	A	1.929e^-4	0.923	INTRON GV1
X	17956023	X_17956023_SNP [dm3] X_18061990_SNP [dm6]	T	C	1.934e^-4	0.923	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	5502637	3R_5502637_SNP [dm3] 3R_9676915_SNP [dm6]	C	T	1.940e^-4	0.923	SYNONYMOUS_CODING CG8358	TF binding site mE1_TFBS_sens
X	13151581	X_13151581_SNP [dm3] X_13257548_SNP [dm6]	G	A	1.952e^-4	0.923	UTR_3_PRIME CG15742 UPSTREAM mew INTRON mew	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run
3R	7276413	3R_7276413_SNP [dm3] 3R_11450691_SNP [dm6]	A	T	1.956e^-4	0.923	INTRON CG17230 & 1 other
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	1.964e^-4	0.923	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	1.964e^-4	0.923	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2L	10085417	2L_10085417_SNP [dm3] 2L_10085417_SNP [dm6]	G	A	1.967e^-4	0.923	INTRON CG44153
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	1.972e^-4	0.923	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14517387	3L_14517387_SNP [dm3] 3L_14524287_SNP [dm6]	A	T	1.979e^-4	0.923	INTRON bbg
3R	13581194	3R_13581194_SNP [dm3] 3R_17755472_SNP [dm6]	C	T	1.988e^-4	0.923	INTRON TyrR
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	1.989e^-4	0.923	INTRON CG2082
3L	1588011	3L_1588011_SNP [dm3] 3L_1588011_SNP [dm6]	T	A	1.996e^-4	0.923	INTRON CG13917
3L	1748269	3L_1748269_SNP [dm3] 3L_1748269_SNP [dm6]	G	A	2.001e^-4	0.923	UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2003999	2L_2003999_SNP [dm3] 2L_2003999_SNP [dm6]	C	T	2.003e^-4	0.923	DOWNSTREAM CR43464 INTRON CG33543
3R	17731421	3R_17731421_SNP [dm3] 3R_21905699_SNP [dm6]	C	G	2.007e^-4	0.923	INTRON CG6678	TF binding site mE1_TFBS_chinmo
3R	17755608	3R_17755608_SNP [dm3] 3R_21929886_SNP [dm6]	A	C	2.008e^-4	0.923	INTERGENIC
3R	14079521	3R_14079521_SNP [dm3] 3R_18253799_SNP [dm6]	T	A	2.017e^-4	0.923	NON_SYNONYMOUS_CODING Ada2a SPLICE_SITE_REGION Ada2a INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
3L	23089474	3L_23089474_SNP [dm3] 3L_23096374_SNP [dm6]	G	A	2.017e^-4	0.923	UPSTREAM RpL10 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx transposable element FlyBase
2L	2841738	2L_2841738_SNP [dm3] 2L_2841738_SNP [dm6]	T	C	2.018e^-4	0.923	DOWNSTREAM CG18558 INTRON CG2975
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.028e^-4	0.923	DOWNSTREAM mthl13 INTRON CG33144
2R	15597150	2R_15597150_SNP [dm3] 2R_19709645_SNP [dm6]	C	T	2.032e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs
3L	12089942	3L_12089942_SNP [dm3] 3L_12096842_SNP [dm6]	A	T	2.035e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12089945	3L_12089945_SNP [dm3] 3L_12096845_SNP [dm6]	C	G	2.035e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21138092	3R_21138092_SNP [dm3] 3R_25312370_SNP [dm6]	G	A	2.043e^-4	0.923	SYNONYMOUS_CODING CG31087
3R	5602156	3R_5602156_SNP [dm3] 3R_9776434_SNP [dm6]	T	C	2.045e^-4	0.923	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2004002	2L_2004002_SNP [dm3] 2L_2004002_SNP [dm6]	A	G	2.049e^-4	0.923	DOWNSTREAM CR43464 INTRON CG33543
3L	1844294	3L_1844294_SNP [dm3] 3L_1844294_SNP [dm6]	C	T	2.054e^-4	0.923	INTERGENIC
2L	11448471	2L_11448471_SNP [dm3] 2L_11448471_SNP [dm6]	T	C	2.066e^-4	0.923	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7419459	3L_7419459_SNP [dm3] 3L_7426359_SNP [dm6]	A	T	2.068e^-4	0.923	INTRON CG42458
2R	10425900	2R_10425900_SNP [dm3] 2R_14538395_SNP [dm6]	A	C	2.087e^-4	0.923	INTRON ttv
3R	16006333	3R_16006333_SNP [dm3] 3R_20180611_SNP [dm6]	T	A	2.094e^-4	0.923	INTERGENIC
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	2.095e^-4	0.923	INTERGENIC
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	2.099e^-4	0.923	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	11255236	X_11255236_SNP [dm3] X_11361203_SNP [dm6]	A	G	2.100e^-4	0.923	UTR_3_PRIME hop DOWNSTREAM Pa1
3L	21549626	3L_21549626_SNP [dm3] 3L_21556526_SNP [dm6]	G	C	2.101e^-4	0.923	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
3L	12820006	3L_12820006_SNP [dm3] 3L_12826906_SNP [dm6]	A	C	2.107e^-4	0.923	INTRON CG10960
2R	7638329	2R_7638329_SNP [dm3] 2R_11750824_SNP [dm6]	G	C	2.107e^-4	0.923	INTERGENIC
X	5967520	X_5967520_SNP [dm3] X_6073487_SNP [dm6]	C	A	2.140e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	2.158e^-4	0.923	DOWNSTREAM CR45720 INTERGENIC
3L	4806279	3L_4806279_SNP [dm3] 3L_4806279_SNP [dm6]	T	A	2.159e^-4	0.923	NON_SYNONYMOUS_CODING CG18808	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10639931	3L_10639931_SNP [dm3] 3L_10646831_SNP [dm6]	G	A	2.160e^-4	0.923	INTRON CG32066
X	15264031	X_15264031_SNP [dm3] X_15369998_SNP [dm6]	T	G	2.163e^-4	0.923	INTRON acj6
2R	1738797	2R_1738797_SNP [dm3] 2R_5851292_SNP [dm6]	A	C	2.163e^-4	0.923	INTRON dpr12
3L	6710275	3L_6710275_SNP [dm3] 3L_6717175_SNP [dm6]	G	A	2.168e^-4	0.923	INTRON ple	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	2.168e^-4	0.923	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14557665	3L_14557665_SNP [dm3] 3L_14564565_SNP [dm6]	T	A	2.170e^-4	0.923	INTERGENIC
2L	3195912	2L_3195912_SNP [dm3] 2L_3195912_SNP [dm6]	G	C	2.179e^-4	0.923	INTRON CG34393
2R	16777373	2R_16777373_SNP [dm3] 2R_20889868_SNP [dm6]	G	A	2.183e^-4	0.923	INTRON otp	TF binding site mE1_TFBS_HSA
3L	936637	3L_936637_SNP [dm3] 3L_936637_SNP [dm6]	G	T	2.189e^-4	0.923	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15821043	3R_15821043_SNP [dm3] 3R_19995321_SNP [dm6]	C	A	2.191e^-4	0.923	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7988252	2L_7988252_SNP [dm3] 2L_7988252_SNP [dm6]	A	T	2.194e^-4	0.923	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5589428	3R_5589428_SNP [dm3] 3R_9763706_SNP [dm6]	A	C	2.198e^-4	0.923	UTR_5_PRIME CG8478 UPSTREAM CG8478 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	11448451	2L_11448451_DEL [dm3] 2L_11448451_DEL [dm6]	AT	A	2.207e^-4	0.923	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19826546	3L_19826546_SNP [dm3] 3L_19833446_SNP [dm6]	G	T	2.208e^-4	0.923	INTRON trc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8068453	X_8068453_DEL [dm3] X_8174420_DEL [dm6]	TAGAGTAAAGTAATGTAGAA...	T	2.224e^-4	0.923	INTRON slpr
3L	1768584	3L_1768584_SNP [dm3] 3L_1768584_SNP [dm6]	A	T	2.226e^-4	0.923	SYNONYMOUS_CODING Dhc62B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	2.227e^-4	0.923	INTRON CG42788
2R	12048243	2R_12048243_SNP [dm3] 2R_16160738_SNP [dm6]	G	T	2.228e^-4	0.923	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19231132	3R_19231132_SNP [dm3] 3R_23405410_SNP [dm6]	G	A	2.234e^-4	0.923	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
2R	19403808	2R_19403808_SNP [dm3] 2R_23516285_SNP [dm6]	T	C	2.235e^-4	0.923	INTERGENIC
2R	10897172	2R_10897172_SNP [dm3] 2R_15009667_SNP [dm6]	C	A	2.236e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13400852	2R_13400852_SNP [dm3] 2R_17513347_SNP [dm6]	A	G	2.238e^-4	0.923	SYNONYMOUS_CODING CG4847 UPSTREAM CG4853	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3508454	2R_3508454_SNP [dm3] 2R_7620949_SNP [dm6]	C	T	2.242e^-4	0.923	UPSTREAM CG1358 DOWNSTREAM CR44444 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19725777	3R_19725777_SNP [dm3] 3R_23900055_SNP [dm6]	C	T	2.242e^-4	0.923	INTRON sba	TF binding site mE1_TFBS_chinmo
2L	14009809	2L_14009809_SNP [dm3] 2L_14009809_SNP [dm6]	A	C	2.250e^-4	0.923	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	2.254e^-4	0.923	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3L	15876268	3L_15876268_SNP [dm3] 3L_15883168_SNP [dm6]	G	T	2.257e^-4	0.923	INTRON pHCl
3L	14515781	3L_14515781_SNP [dm3] 3L_14522681_SNP [dm6]	C	A	2.260e^-4	0.923	UPSTREAM CG4613 INTRON bbg	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	22988219	3R_22988219_SNP [dm3] 3R_27162497_SNP [dm6]	A	G	2.275e^-4	0.923	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	20267118	2L_20267118_SNP [dm3] 2L_20267118_SNP [dm6]	C	T	2.277e^-4	0.923	INTERGENIC
3R	22219022	3R_22219022_SNP [dm3] 3R_26393300_SNP [dm6]	A	C	2.290e^-4	0.923	INTERGENIC
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	2.293e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9817240	2L_9817240_SNP [dm3] 2L_9817240_SNP [dm6]	T	C	2.296e^-4	0.923	INTRON nAChRalpha6
3R	1640396	3R_1640396_SNP [dm3] 3R_5814674_SNP [dm6]	C	T	2.298e^-4	0.923	START_GAINED CG42675 UTR_5_PRIME CG42675 UPSTREAM CG42675 INTRON CG42675	TF binding site mE1_TFBS_cad
3R	19230108	3R_19230108_SNP [dm3] 3R_23404386_SNP [dm6]	T	G	2.302e^-4	0.923	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
3R	26008027	3R_26008027_SNP [dm3] 3R_30182305_SNP [dm6]	C	T	2.305e^-4	0.923	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1263829	3L_1263829_SNP [dm3] 3L_1263829_SNP [dm6]	G	A	2.307e^-4	0.923	INTRON CG9134
2R	12265231	2R_12265231_INS [dm3] 2R_16377726_INS [dm6]	A	AGAAGAATGACTAAGTTTCA...	2.309e^-4	0.923	INTERGENIC
2L	7986739	2L_7986739_SNP [dm3] 2L_7986739_SNP [dm6]	C	A	2.315e^-4	0.923	UTR_3_PRIME CG7231 DOWNSTREAM pes
3R	17067474	3R_17067474_INS [dm3] 3R_21241752_INS [dm6]	T	TTTATGATTA	2.319e^-4	0.923	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
X	8190815	X_8190815_SNP [dm3] X_8296782_SNP [dm6]	A	T	2.322e^-4	0.923	INTRON nAChRalpha3
2L	5590203	2L_5590203_SNP [dm3] 2L_5590203_SNP [dm6]	A	T	2.335e^-4	0.923	INTERGENIC
3L	18941475	3L_18941475_SNP [dm3] 3L_18948375_SNP [dm6]	C	A	2.336e^-4	0.923	INTERGENIC
2R	14947111	2R_14947111_SNP [dm3] 2R_19059606_SNP [dm6]	C	A	2.347e^-4	0.923	UTR_5_PRIME CG15109	TF binding site mE1_TFBS_inv
3L	12820019	3L_12820019_MNP [dm3] 3L_12826919_MNP [dm6]	GGC	ATA	2.348e^-4	0.923	INTRON CG10960
3L	12820023	3L_12820023_SNP [dm3] 3L_12826923_SNP [dm6]	T	A	2.348e^-4	0.923	INTRON CG10960
2R	18678157	2R_18678157_SNP [dm3] 2R_22790652_SNP [dm6]	G	A	2.357e^-4	0.923	INTRON CG42260
3L	16411633	3L_16411633_SNP [dm3] 3L_16418533_SNP [dm6]	A	G	2.359e^-4	0.923	SYNONYMOUS_CODING Aats-tyr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26009168	3R_26009168_SNP [dm3] 3R_30183446_SNP [dm6]	T	C	2.362e^-4	0.923	DOWNSTREAM CR44262 INTERGENIC
2L	7986540	2L_7986540_SNP [dm3] 2L_7986540_SNP [dm6]	C	T	2.363e^-4	0.923	SYNONYMOUS_CODING CG7231 DOWNSTREAM pes
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	2.365e^-4	0.923	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9028998	2L_9028998_SNP [dm3] 2L_9028998_SNP [dm6]	G	T	2.375e^-4	0.923	INTRON CG9582 & 1 other
3R	10019020	3R_10019020_SNP [dm3] 3R_14193298_SNP [dm6]	G	C	2.379e^-4	0.923	INTRON Dop1R1
2L	19885095	2L_19885095_INS [dm3] 2L_19885095_INS [dm6]	A	ATTTCGTACGCACT...	2.384e^-4	0.923	INTRON sick
2L	15949285	2L_15949285_SNP [dm3] 2L_15949285_SNP [dm6]	G	A	2.392e^-4	0.923	INTRON beat-Ib
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	2.394e^-4	0.923	INTRON bbg	TF binding site mE1_TFBS_cnc
3R	16006328	3R_16006328_SNP [dm3] 3R_20180606_SNP [dm6]	A	G	2.395e^-4	0.923	INTERGENIC
3R	5993723	3R_5993723_SNP [dm3] 3R_10168001_SNP [dm6]	A	T	2.396e^-4	0.923	INTRON Best1
3L	8450604	3L_8450604_INS [dm3] 3L_8457504_INS [dm6]	T	TGCCAGGCCAGGCAT...	2.399e^-4	0.923	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	10193334	X_10193334_SNP [dm3] X_10299301_SNP [dm6]	A	C	2.399e^-4	0.923	INTRON alpha-Man-I
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	2.402e^-4	0.923	INTRON CG13917	TF binding site mE1_TFBS_HSA
3L	10523025	3L_10523025_SNP [dm3] 3L_10529925_SNP [dm6]	A	G	2.405e^-4	0.923	INTRON A2bp1
2L	17284518	2L_17284518_INS [dm3] 2L_17284518_INS [dm6]	A	AA	2.417e^-4	0.923	INTERGENIC
2R	9532598	2R_9532598_SNP [dm3] 2R_13645093_SNP [dm6]	C	T	2.418e^-4	0.923	INTRON fas
2R	18933967	2R_18933967_SNP [dm3] 2R_23046444_SNP [dm6]	A	G	2.426e^-4	0.923	UTR_5_PRIME twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	1596670	3R_1596670_SNP [dm3] 3R_5770948_SNP [dm6]	G	C	2.444e^-4	0.923	INTRON CG2082
2L	4130635	2L_4130635_SNP [dm3] 2L_4130635_SNP [dm6]	T	G	2.457e^-4	0.923	INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	2.460e^-4	0.923	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14806905	2R_14806905_SNP [dm3] 2R_18919400_SNP [dm6]	C	T	2.462e^-4	0.923	INTRON sano
2R	14534088	2R_14534088_SNP [dm3] 2R_18646583_SNP [dm6]	T	C	2.463e^-4	0.923	INTRON SP2637
3R	17763852	3R_17763852_SNP [dm3] 3R_21938130_SNP [dm6]	T	A	2.465e^-4	0.923	INTERGENIC
3R	1617650	3R_1617650_SNP [dm3] 3R_5791928_SNP [dm6]	A	G	2.465e^-4	0.923	UTR_5_PRIME CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	2.467e^-4	0.923	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3861352	2L_3861352_SNP [dm3] 2L_3861352_SNP [dm6]	G	A	2.470e^-4	0.923	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	8441807	3R_8441807_SNP [dm3] 3R_12616085_SNP [dm6]	G	A	2.471e^-4	0.923	INTERGENIC
2L	2834935	2L_2834935_SNP [dm3] 2L_2834935_SNP [dm6]	G	A	2.481e^-4	0.923	UTR_3_PRIME CG3119
3L	14435161	3L_14435161_SNP [dm3] 3L_14442061_SNP [dm6]	C	T	2.489e^-4	0.923	INTRON bbg
3R	1513779	3R_1513779_SNP [dm3] 3R_5688057_SNP [dm6]	T	A	2.490e^-4	0.923	INTRON plx
3L	23075573	3L_23075573_DEL [dm3] 3L_23082473_DEL [dm6]	CTGACGAGAGAGAGCCGTAA...	C	2.500e^-4	0.923	INTERGENIC
3L	1332448	3L_1332448_SNP [dm3] 3L_1332448_SNP [dm6]	G	C	2.501e^-4	0.923	SYNONYMOUS_CODING msd5 DOWNSTREAM mtacp1 & 2 others
3R	22524189	3R_22524189_SNP [dm3] 3R_26698467_SNP [dm6]	A	T	2.511e^-4	0.923	UTR_3_PRIME amon
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	2.514e^-4	0.923	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
2L	9039925	2L_9039925_SNP [dm3] 2L_9039925_SNP [dm6]	T	A	2.517e^-4	0.923	INTERGENIC
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	2.521e^-4	0.923	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26611716	3R_26611716_SNP [dm3] 3R_30785994_SNP [dm6]	G	A	2.525e^-4	0.923	INTRON zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	23075629	3L_23075629_DEL [dm3] 3L_23082529_DEL [dm6]	CAGCTCAACGTTGTTTGTTA...	C	2.541e^-4	0.923	INTERGENIC
3L	9082750	3L_9082750_SNP [dm3] 3L_9089650_SNP [dm6]	A	G	2.548e^-4	0.923	SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25215084	3R_25215084_SNP [dm3] 3R_29389362_SNP [dm6]	T	A	2.552e^-4	0.923	INTRON Ptp99A
2R	423336	2R_423336_SNP [dm3] 2R_4535831_SNP [dm6]	G	A	2.556e^-4	0.923	INTERGENIC	transposable element FlyBase
3R	22525466	3R_22525466_SNP [dm3] 3R_26699744_SNP [dm6]	T	C	2.558e^-4	0.923	SYNONYMOUS_CODING amon
2R	14518365	2R_14518365_SNP [dm3] 2R_18630860_SNP [dm6]	G	A	2.585e^-4	0.923	SYNONYMOUS_CODING CG5482
2L	7215593	2L_7215593_SNP [dm3] 2L_7215593_SNP [dm6]	A	T	2.597e^-4	0.923	INTRON CG13784
2L	14983436	2L_14983436_SNP [dm3] 2L_14983436_SNP [dm6]	A	G	2.599e^-4	0.923	INTRON mol
3R	24985357	3R_24985357_SNP [dm3] 3R_29159635_SNP [dm6]	T	A	2.601e^-4	0.923	INTRON CG11897
3L	1635929	3L_1635929_SNP [dm3] 3L_1635929_SNP [dm6]	A	G	2.603e^-4	0.923	SPLICE_SITE_REGION nSyb INTRON nSyb	TF binding site mE1_TFBS_HSA
2R	15917060	2R_15917060_SNP [dm3] 2R_20029555_SNP [dm6]	C	T	2.605e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	11835815	3L_11835815_SNP [dm3] 3L_11842715_SNP [dm6]	A	G	2.608e^-4	0.923	INTERGENIC
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	2.616e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	24085041	3R_24085041_SNP [dm3] 3R_28259319_SNP [dm6]	T	C	2.616e^-4	0.923	INTERGENIC
3R	18055184	3R_18055184_SNP [dm3] 3R_22229462_SNP [dm6]	T	C	2.617e^-4	0.923	INTRON SKIP
2L	11323101	2L_11323101_SNP [dm3] 2L_11323101_SNP [dm6]	C	T	2.617e^-4	0.923	INTERGENIC
2R	12090757	2R_12090757_SNP [dm3] 2R_16203252_SNP [dm6]	G	A	2.627e^-4	0.923	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3L	16862013	3L_16862013_SNP [dm3] 3L_16868913_SNP [dm6]	G	A	2.640e^-4	0.923	INTRON Lmpt
2L	6583130	2L_6583130_SNP [dm3] 2L_6583130_SNP [dm6]	G	A	2.648e^-4	0.923	INTRON CG11319	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	2.650e^-4	0.923	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	4697689	2L_4697689_SNP [dm3] 2L_4697689_SNP [dm6]	T	C	2.652e^-4	0.923	INTRON CG34351
2L	5138319	2L_5138319_SNP [dm3] 2L_5138319_SNP [dm6]	G	C	2.657e^-4	0.923	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	3861275	2L_3861275_SNP [dm3] 2L_3861275_SNP [dm6]	T	A	2.658e^-4	0.923	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14336596	3L_14336596_SNP [dm3] 3L_14343496_SNP [dm6]	T	C	2.658e^-4	0.923	INTRON fz
3L	17197684	3L_17197684_SNP [dm3] 3L_17204584_SNP [dm6]	C	G	2.661e^-4	0.923	INTRON Rbp6
2L	20267013	2L_20267013_SNP [dm3] 2L_20267013_SNP [dm6]	G	A	2.661e^-4	0.923	INTERGENIC
3L	14295437	3L_14295437_SNP [dm3] 3L_14302337_SNP [dm6]	A	C	2.675e^-4	0.923	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	2.677e^-4	0.923	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
2R	12647448	2R_12647448_SNP [dm3] 2R_16759943_SNP [dm6]	A	T	2.680e^-4	0.923	SYNONYMOUS_CODING unc-104	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18414675	X_18414675_SNP [dm3] X_18520642_SNP [dm6]	T	C	2.681e^-4	0.923	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	23075296	3L_23075296_SNP [dm3] 3L_23082196_SNP [dm6]	A	C	2.687e^-4	0.923	INTERGENIC
3L	9685859	3L_9685859_SNP [dm3] 3L_9692759_SNP [dm6]	T	C	2.688e^-4	0.923	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3R	18063190	3R_18063190_SNP [dm3] 3R_22237468_SNP [dm6]	C	T	2.690e^-4	0.923	INTRON SKIP
3L	14469145	3L_14469145_SNP [dm3] 3L_14476045_SNP [dm6]	T	A	2.694e^-4	0.923	INTRON bbg
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	2.695e^-4	0.923	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	25216026	3R_25216026_SNP [dm3] 3R_29390304_SNP [dm6]	A	G	2.702e^-4	0.923	INTRON Ptp99A
2R	13277003	2R_13277003_SNP [dm3] 2R_17389498_SNP [dm6]	C	A	2.706e^-4	0.923	UPSTREAM CR44344 INTERGENIC	TF binding site mE1_TFBS_Kr
3L	16071292	3L_16071292_SNP [dm3] 3L_16078192_SNP [dm6]	C	T	2.706e^-4	0.923	INTRON Mbs	TF binding site BDTNP1_TFBS_dl
X	8998205	X_8998205_SNP [dm3] X_9104172_SNP [dm6]	C	T	2.708e^-4	0.923	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	1630618	3R_1630618_SNP [dm3] 3R_5804896_SNP [dm6]	A	G	2.708e^-4	0.923	INTRON CG11000	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	2.709e^-4	0.923	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	2.720e^-4	0.923	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
2R	9967728	2R_9967728_SNP [dm3] 2R_14080223_SNP [dm6]	T	A	2.722e^-4	0.923	INTRON Prosap
3L	14517395	3L_14517395_SNP [dm3] 3L_14524295_SNP [dm6]	A	C	2.725e^-4	0.923	INTRON bbg
2L	6309349	2L_6309349_SNP [dm3] 2L_6309349_SNP [dm6]	A	T	2.730e^-4	0.923	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
2R	10273767	2R_10273767_SNP [dm3] 2R_14386262_SNP [dm6]	T	C	2.733e^-4	0.923	DOWNSTREAM Dh44-R1 INTERGENIC
3R	6021168	3R_6021168_SNP [dm3] 3R_10195446_SNP [dm6]	G	A	2.753e^-4	0.923	INTRON Syn
X	11231636	X_11231636_SNP [dm3] X_11337603_SNP [dm6]	C	A	2.756e^-4	0.923	SYNONYMOUS_CODING Kap3
2R	14879963	2R_14879963_SNP [dm3] 2R_18992458_SNP [dm6]	C	T	2.759e^-4	0.923	INTRON tn
2L	3290351	2L_3290351_SNP [dm3] 2L_3290351_SNP [dm6]	T	C	2.767e^-4	0.923	DOWNSTREAM CG9664 INTERGENIC
3L	4375711	3L_4375711_SNP [dm3] 3L_4375711_SNP [dm6]	A	C	2.771e^-4	0.923	INTRON DopEcR
2L	16799409	2L_16799409_SNP [dm3] 2L_16799409_SNP [dm6]	T	A	2.774e^-4	0.923	UPSTREAM Ugt36Bc INTRON Ugt36Bc
3R	17731389	3R_17731389_SNP [dm3] 3R_21905667_SNP [dm6]	T	A	2.795e^-4	0.923	INTRON CG6678	TF binding site mE1_TFBS_chinmo
2R	15597192	2R_15597192_SNP [dm3] 2R_19709687_SNP [dm6]	C	A	2.795e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs
3L	17174848	3L_17174848_SNP [dm3] 3L_17181748_SNP [dm6]	C	T	2.805e^-4	0.923	INTRON Rbp6
3L	5969389	3L_5969389_SNP [dm3] 3L_5976289_SNP [dm6]	T	C	2.809e^-4	0.923	UPSTREAM CG10479 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	5499893	3R_5499893_SNP [dm3] 3R_9674171_SNP [dm6]	A	G	2.820e^-4	0.923	UPSTREAM CG9492 INTRON CG9492	TF binding site BDTNP1_TFBS_sna
2L	1271310	2L_1271310_INS [dm3] 2L_1271310_INS [dm6]	A	CAAAACAAAAGCC...	2.821e^-4	0.923	INTRON robo3
3R	5061448	3R_5061448_SNP [dm3] 3R_9235726_SNP [dm6]	T	A	2.824e^-4	0.923	INTRON pum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	16436473	2R_16436473_SNP [dm3] 2R_20548968_SNP [dm6]	A	G	2.828e^-4	0.923	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	2.829e^-4	0.923	INTRON Octbeta2R
2L	10291234	2L_10291234_SNP [dm3] 2L_10291234_SNP [dm6]	G	A	2.829e^-4	0.923	INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	2.836e^-4	0.923	INTRON CG5888
3R	5603438	3R_5603438_SNP [dm3] 3R_9777716_SNP [dm6]	G	A	2.841e^-4	0.923	SYNONYMOUS_CODING topi UPSTREAM RpS29 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	17304331	2L_17304331_SNP [dm3] 2L_17304331_SNP [dm6]	G	A	2.853e^-4	0.923	INTERGENIC
2L	12227599	2L_12227599_SNP [dm3] 2L_12227599_SNP [dm6]	A	G	2.865e^-4	0.923	INTRON aret
3R	12044304	3R_12044304_SNP [dm3] 3R_16218582_SNP [dm6]	G	A	2.881e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12100621	3L_12100621_SNP [dm3] 3L_12107521_SNP [dm6]	G	C	2.881e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19967249	2R_19967249_SNP [dm3] 2R_24079726_SNP [dm6]	G	A	2.889e^-4	0.923	SYNONYMOUS_CODING CG10339	TF binding site mE1_TFBS_cad
2L	7944054	2L_7944054_DEL [dm3] 2L_7944054_DEL [dm6]	ATATTAG	A	2.890e^-4	0.923	INTRON Snoo
2L	7944098	2L_7944098_SNP [dm3] 2L_7944098_SNP [dm6]	C	T	2.890e^-4	0.923	INTRON Snoo
3L	1792795	3L_1792795_SNP [dm3] 3L_1792795_SNP [dm6]	A	T	2.894e^-4	0.923	SYNONYMOUS_CODING dlt INTRON alpha-Spec	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12090765	2R_12090765_DEL [dm3] 2R_16203260_DEL [dm6]	TGCATC	T	2.901e^-4	0.923	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	20418313	2L_20418313_INS [dm3] 2L_20418313_INS [dm6]	G	GCCTTAATT	2.907e^-4	0.923	UPSTREAM snoRNA:Psi18S-525a & 6 others INTRON Arpc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10228078	3L_10228078_DEL [dm3] 3L_10234978_DEL [dm6]	TT	T	2.907e^-4	0.923	INTERGENIC
X	13152430	X_13152430_SNP [dm3] X_13258397_SNP [dm6]	G	A	2.919e^-4	0.923	UTR_5_PRIME CG15742 & 1 other UPSTREAM comt & 1 other	TF binding site BDTNP1_TFBS_dl
3L	14559797	3L_14559797_SNP [dm3] 3L_14566697_SNP [dm6]	T	C	2.922e^-4	0.923	UPSTREAM CG42758 INTERGENIC
3L	14559800	3L_14559800_SNP [dm3] 3L_14566700_SNP [dm6]	A	G	2.922e^-4	0.923	UPSTREAM CG42758 INTERGENIC
3R	7261147	3R_7261147_SNP [dm3] 3R_11435425_SNP [dm6]	C	A	2.926e^-4	0.923	NON_SYNONYMOUS_CODING CG6744 UPSTREAM CG5281	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1664236	3R_1664236_SNP [dm3] 3R_5838514_SNP [dm6]	G	A	2.931e^-4	0.923	UTR_3_PRIME CG1208
3R	1667247	3R_1667247_SNP [dm3] 3R_5841525_SNP [dm6]	A	T	2.931e^-4	0.923	UTR_5_PRIME CG1213 INTRON CG1213
3R	1678818	3R_1678818_SNP [dm3] 3R_5853096_SNP [dm6]	G	A	2.931e^-4	0.923	SYNONYMOUS_CODING disp UPSTREAM CG34287
3R	1682086	3R_1682086_DEL [dm3] 3R_5856364_DEL [dm6]	ATTCGT	A	2.931e^-4	0.923	UPSTREAM ECSIT & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1682095	3R_1682095_DEL [dm3] 3R_5856373_DEL [dm6]	GGTAGTCACAATGAGCTT...	G	2.931e^-4	0.923	UPSTREAM ECSIT & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1690402	3R_1690402_SNP [dm3] 3R_5864680_SNP [dm6]	A	T	2.931e^-4	0.923	UTR_3_PRIME CG34113
3R	19742311	3R_19742311_SNP [dm3] 3R_23916589_SNP [dm6]	A	G	2.933e^-4	0.923	INTRON sba
3R	17763847	3R_17763847_DEL [dm3] 3R_21938125_DEL [dm6]	CG	C	2.945e^-4	0.923	INTERGENIC
3R	18775081	3R_18775081_SNP [dm3] 3R_22949359_SNP [dm6]	T	C	2.947e^-4	0.923	INTRON klg
3R	12384409	3R_12384409_SNP [dm3] 3R_16558687_SNP [dm6]	G	A	2.949e^-4	0.923	INTRON CG42342
X	8998005	X_8998005_SNP [dm3] X_9103972_SNP [dm6]	T	A	2.951e^-4	0.923	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_HSA
2R	12647745	2R_12647745_SNP [dm3] 2R_16760240_SNP [dm6]	T	C	2.959e^-4	0.923	SYNONYMOUS_CODING unc-104
3R	7894151	3R_7894151_SNP [dm3] 3R_12068429_SNP [dm6]	T	G	2.966e^-4	0.923	UTR_3_PRIME CG14741
3L	19264421	3L_19264421_SNP [dm3] 3L_19271321_SNP [dm6]	G	C	2.970e^-4	0.923	UPSTREAM CG14088 INTRON CG14085	TF binding site BDTNP1_TFBS_twi
2L	16230363	2L_16230363_SNP [dm3] 2L_16230363_SNP [dm6]	A	T	2.974e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	15020518	3L_15020518_SNP [dm3] 3L_15027418_SNP [dm6]	G	A	2.980e^-4	0.923	INTRON Sytbeta
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	2.989e^-4	0.923	UPSTREAM CG15403 INTRON toc
3R	1667936	3R_1667936_SNP [dm3] 3R_5842214_SNP [dm6]	C	T	2.993e^-4	0.923	INTRON CG1213
2R	14879567	2R_14879567_SNP [dm3] 2R_18992062_SNP [dm6]	A	G	2.994e^-4	0.923	INTRON tn
3R	26611763	3R_26611763_SNP [dm3] 3R_30786041_SNP [dm6]	G	A	2.995e^-4	0.923	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	19009551	2L_19009551_SNP [dm3] 2L_19009551_SNP [dm6]	C	T	3.001e^-4	0.923	UPSTREAM snoRNA:Me28S-A2113 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	14513902	3L_14513902_SNP [dm3] 3L_14520802_SNP [dm6]	A	G	3.003e^-4	0.923	INTRON bbg & 1 other
3L	17191309	3L_17191309_DEL [dm3] 3L_17198209_DEL [dm6]	TGTT	T	3.007e^-4	0.923	INTRON Rbp6
2R	1099262	2R_1099262_SNP [dm3] 2R_5211757_SNP [dm6]	T	G	3.014e^-4	0.923	INTRON Nipped-A	transposable element FlyBase
X	8998164	X_8998164_SNP [dm3] X_9104131_SNP [dm6]	C	T	3.017e^-4	0.923	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	8998291	X_8998291_SNP [dm3] X_9104258_SNP [dm6]	T	C	3.017e^-4	0.923	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	2382486	X_2382486_SNP [dm3] X_2488453_SNP [dm6]	G	A	3.019e^-4	0.923	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11448450	2L_11448450_SNP [dm3] 2L_11448450_SNP [dm6]	T	C	3.022e^-4	0.923	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14009811	2L_14009811_SNP [dm3] 2L_14009811_SNP [dm6]	T	A	3.026e^-4	0.923	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	14511665	3L_14511665_SNP [dm3] 3L_14518565_SNP [dm6]	C	T	3.038e^-4	0.923	DOWNSTREAM CG9592 INTRON bbg
3L	12058818	3L_12058818_SNP [dm3] 3L_12065718_SNP [dm6]	G	T	3.040e^-4	0.923	UPSTREAM rols INTERGENIC
3R	17757810	3R_17757810_SNP [dm3] 3R_21932088_SNP [dm6]	A	G	3.049e^-4	0.923	INTERGENIC
2L	14917947	2L_14917947_INS [dm3] 2L_14917947_INS [dm6]	G	GG	3.054e^-4	0.923	INTRON CG42313
2L	21960181	2L_21960181_SNP [dm3] 2L_21960181_SNP [dm6]	G	A	3.064e^-4	0.923	UPSTREAM CR44804 INTERGENIC
3R	26413630	3R_26413630_SNP [dm3] 3R_30587908_SNP [dm6]	A	C	3.064e^-4	0.923	UPSTREAM CG9717 INTERGENIC
3L	16726599	3L_16726599_SNP [dm3] 3L_16733499_SNP [dm6]	G	T	3.074e^-4	0.923	UPSTREAM CG9701 INTERGENIC
2L	10089317	2L_10089317_SNP [dm3] 2L_10089317_SNP [dm6]	C	T	3.080e^-4	0.923	INTRON CG44153
2L	15870122	2L_15870122_SNP [dm3] 2L_15870122_SNP [dm6]	T	C	3.080e^-4	0.923	INTERGENIC
3R	23031795	3R_23031795_SNP [dm3] 3R_27206073_SNP [dm6]	T	C	3.081e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14730169	3R_14730169_SNP [dm3] 3R_18904447_SNP [dm6]	G	A	3.083e^-4	0.923	DOWNSTREAM CG14292 INTERGENIC
2L	6086077	2L_6086077_SNP [dm3] 2L_6086077_SNP [dm6]	A	T	3.084e^-4	0.923	INTRON Kr-h1	TF binding site mE1_TFBS_inv
3R	10285363	3R_10285363_SNP [dm3] 3R_14459641_SNP [dm6]	A	T	3.089e^-4	0.923	INTRON cv-c
2L	7448009	2L_7448009_SNP [dm3] 2L_7448009_SNP [dm6]	G	C	3.091e^-4	0.923	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
2R	15916209	2R_15916209_SNP [dm3] 2R_20028704_SNP [dm6]	T	G	3.093e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_jumu mE1_TFBS_Trl
3R	18055161	3R_18055161_SNP [dm3] 3R_22229439_SNP [dm6]	T	A	3.100e^-4	0.923	INTRON SKIP
3L	18360745	3L_18360745_SNP [dm3] 3L_18367645_SNP [dm6]	T	A	3.103e^-4	0.923	INTERGENIC
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	3.112e^-4	0.923	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	5549400	3R_5549400_SNP [dm3] 3R_9723678_SNP [dm6]	A	G	3.117e^-4	0.923	NON_SYNONYMOUS_CODING hyd
3R	18055179	3R_18055179_SNP [dm3] 3R_22229457_SNP [dm6]	T	C	3.117e^-4	0.923	INTRON SKIP
3R	17755641	3R_17755641_SNP [dm3] 3R_21929919_SNP [dm6]	T	A	3.133e^-4	0.923	INTERGENIC
2R	13259577	2R_13259577_SNP [dm3] 2R_17372072_SNP [dm6]	C	A	3.137e^-4	0.923	INTRON mbl
3R	1619305	3R_1619305_SNP [dm3] 3R_5793583_SNP [dm6]	A	G	3.141e^-4	0.923	DOWNSTREAM CG1218 INTRON CG2046	TF binding site mE1_TFBS_sens
X	21453685	X_21453685_SNP [dm3] X_21582658_SNP [dm6]	T	G	3.146e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	3.148e^-4	0.923	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	3.149e^-4	0.923	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14485703	3L_14485703_SNP [dm3] 3L_14492603_SNP [dm6]	T	A	3.153e^-4	0.923	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	23519908	3R_23519908_SNP [dm3] 3R_27694186_SNP [dm6]	G	A	3.155e^-4	0.923	UPSTREAM CG43319 & 1 other INTERGENIC
3R	26286271	3R_26286271_SNP [dm3] 3R_30460549_SNP [dm6]	G	A	3.158e^-4	0.923	UTR_5_PRIME CDase INTRON CDase	TF binding site BDTNP1_TFBS_dl
3L	6736322	3L_6736322_SNP [dm3] 3L_6743222_SNP [dm6]	G	A	3.159e^-4	0.923	UPSTREAM dikar INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn
X	521432	X_521432_SNP [dm3] X_627399_SNP [dm6]	G	A	3.163e^-4	0.923	UTR_3_PRIME CG17829 DOWNSTREAM RpL36	TF binding site mE1_TFBS_sens
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	3.169e^-4	0.923	INTRON drd
3R	10032446	3R_10032446_MNP [dm3] 3R_14206724_MNP [dm6]	TAT	CGA	3.172e^-4	0.923	INTRON Dop1R1
3R	26414280	3R_26414280_SNP [dm3] 3R_30588558_SNP [dm6]	A	T	3.180e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	3287944	2R_3287944_SNP [dm3] 2R_7400439_SNP [dm6]	A	T	3.193e^-4	0.923	UPSTREAM CG11112 INTRON Eaf
3L	22475053	3L_22475053_SNP [dm3] 3L_22481953_SNP [dm6]	C	T	3.205e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	3.210e^-4	0.923	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	14513981	3L_14513981_SNP [dm3] 3L_14520881_SNP [dm6]	T	A	3.213e^-4	0.923	INTRON bbg & 1 other
3R	1639477	3R_1639477_SNP [dm3] 3R_5813755_SNP [dm6]	C	A	3.218e^-4	0.923	UTR_5_PRIME CG42675 UPSTREAM CG42675 DOWNSTREAM CG11000
3R	7368790	3R_7368790_SNP [dm3] 3R_11543068_SNP [dm6]	G	A	3.235e^-4	0.923	UPSTREAM dpr4 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14564892	3L_14564892_SNP [dm3] 3L_14571792_SNP [dm6]	A	C	3.251e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15597146	2R_15597146_SNP [dm3] 2R_19709641_SNP [dm6]	G	A	3.255e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs
2R	10528512	2R_10528512_SNP [dm3] 2R_14641007_SNP [dm6]	T	G	3.258e^-4	0.923	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7987628	2L_7987628_SNP [dm3] 2L_7987628_SNP [dm6]	A	T	3.258e^-4	0.923	UTR_3_PRIME pes DOWNSTREAM CG7231	TF binding site mE1_TFBS_cad
X	3319656	X_3319656_SNP [dm3] X_3425623_SNP [dm6]	A	G	3.260e^-4	0.923	INTRON CR44999 & 1 other
2R	13367791	2R_13367791_SNP [dm3] 2R_17480286_SNP [dm6]	T	A	3.270e^-4	0.923	UTR_3_PRIME CG43110 INTRON veil	TF binding site mE1_TFBS_cad
2R	13648030	2R_13648030_SNP [dm3] 2R_17760525_SNP [dm6]	G	A	3.278e^-4	0.923	UPSTREAM CG5009 DOWNSTREAM HLH54F INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17784470	3R_17784470_SNP [dm3] 3R_21958748_SNP [dm6]	G	C	3.282e^-4	0.923	INTRON Eip93F
3L	9435718	3L_9435718_SNP [dm3] 3L_9442618_SNP [dm6]	A	T	3.298e^-4	0.923	UPSTREAM CG33926 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18425850	3L_18425850_DEL [dm3] 3L_18432750_DEL [dm6]	TATTCGCAGTAGGCCTTTTC...	T	3.304e^-4	0.923	INTERGENIC
3R	26009143	3R_26009143_SNP [dm3] 3R_30183421_SNP [dm6]	T	A	3.304e^-4	0.923	DOWNSTREAM CR44262 INTERGENIC
2L	3261257	2L_3261257_SNP [dm3] 2L_3261257_SNP [dm6]	A	T	3.308e^-4	0.923	DOWNSTREAM CR45338 EXON CR45337
3R	7157599	3R_7157599_SNP [dm3] 3R_11331877_SNP [dm6]	G	A	3.309e^-4	0.923	INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	14079777	3R_14079777_SNP [dm3] 3R_18254055_SNP [dm6]	G	T	3.319e^-4	0.923	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
3R	26413544	3R_26413544_SNP [dm3] 3R_30587822_SNP [dm6]	T	A	3.344e^-4	0.923	UPSTREAM CG9717 INTERGENIC
2R	1738756	2R_1738756_SNP [dm3] 2R_5851251_SNP [dm6]	C	A	3.347e^-4	0.923	INTRON dpr12
2R	8615059	2R_8615059_SNP [dm3] 2R_12727554_SNP [dm6]	G	T	3.363e^-4	0.923	INTRON CG42663
2L	5138250	2L_5138250_SNP [dm3] 2L_5138250_SNP [dm6]	C	T	3.378e^-4	0.923	SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	5556013	3R_5556013_SNP [dm3] 3R_9730291_SNP [dm6]	A	C	3.379e^-4	0.923	START_GAINED FoxP UTR_5_PRIME FoxP DOWNSTREAM alphaTub85E	TF binding site BDTNP1_TFBS_dl
3R	18536520	3R_18536520_SNP [dm3] 3R_22710798_SNP [dm6]	A	C	3.382e^-4	0.923	UPSTREAM CG4907 DOWNSTREAM wge INTERGENIC
2L	4227045	2L_4227045_SNP [dm3] 2L_4227045_SNP [dm6]	A	C	3.388e^-4	0.923	UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
2R	10528502	2R_10528502_SNP [dm3] 2R_14640997_SNP [dm6]	T	C	3.409e^-4	0.923	UPSTREAM CG12862 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4395921	3R_4395921_SNP [dm3] 3R_8570199_SNP [dm6]	C	T	3.409e^-4	0.923	DOWNSTREAM Cenp-C INTERGENIC	TF binding site mE1_TFBS_HSA
3R	1688396	3R_1688396_SNP [dm3] 3R_5862674_SNP [dm6]	A	T	3.409e^-4	0.923	UPSTREAM CG2017 DOWNSTREAM CG34113 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19232020	3R_19232020_SNP [dm3] 3R_23406298_SNP [dm6]	T	G	3.415e^-4	0.923	SYNONYMOUS_CODING Ir94e
2L	13022442	2L_13022442_SNP [dm3] 2L_13022442_SNP [dm6]	A	C	3.423e^-4	0.923	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
2L	5590287	2L_5590287_SNP [dm3] 2L_5590287_SNP [dm6]	C	T	3.425e^-4	0.923	INTERGENIC
3L	9436430	3L_9436430_SNP [dm3] 3L_9443330_SNP [dm6]	A	T	3.429e^-4	0.923	UTR_5_PRIME CG33926	TF binding site BDTNP1_TFBS_dl
3L	13662178	3L_13662178_SNP [dm3] 3L_13669078_SNP [dm6]	T	C	3.446e^-4	0.923	INTRON bru-3
2L	2003686	2L_2003686_SNP [dm3] 2L_2003686_SNP [dm6]	C	A	3.449e^-4	0.923	INTRON CG33543 EXON CR43464
X	13236593	X_13236593_SNP [dm3] X_13342560_SNP [dm6]	T	C	3.451e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14661693	3R_14661693_SNP [dm3] 3R_18835971_SNP [dm6]	A	C	3.453e^-4	0.923	INTRON CG18208
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	3.462e^-4	0.923	NON_SYNONYMOUS_CODING bbg
3R	15826572	3R_15826572_INS [dm3] 3R_20000850_INS [dm6]	A	ACA	3.470e^-4	0.923	INTRON Hs6st	TF binding site BDTNP1_TFBS_twi
X	5968670	X_5968670_SNP [dm3] X_6074637_SNP [dm6]	G	A	3.472e^-4	0.923	START_GAINED Tsp5D UTR_5_PRIME Tsp5D
3L	13915774	3L_13915774_SNP [dm3] 3L_13922674_SNP [dm6]	T	C	3.475e^-4	0.923	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	513219	2L_513219_SNP [dm3] 2L_513219_SNP [dm6]	G	A	3.475e^-4	0.923	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
3R	16987207	3R_16987207_SNP [dm3] 3R_21161485_SNP [dm6]	C	T	3.476e^-4	0.923	UPSTREAM CG10824 INTRON SNF4Agamma
2L	8427243	2L_8427243_SNP [dm3] 2L_8427243_SNP [dm6]	T	C	3.479e^-4	0.923	NON_SYNONYMOUS_CODING Akap200	TF binding site mE1_TFBS_cad
2R	7403489	2R_7403489_SNP [dm3] 2R_11515984_SNP [dm6]	A	C	3.479e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	10241685	3R_10241685_SNP [dm3] 3R_14415963_SNP [dm6]	G	T	3.492e^-4	0.923	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9634475	2R_9634475_SNP [dm3] 2R_13746970_SNP [dm6]	T	A	3.494e^-4	0.923	UTR_3_PRIME fas
3L	14508659	3L_14508659_SNP [dm3] 3L_14515559_SNP [dm6]	C	T	3.495e^-4	0.923	INTRON bbg
3R	1617867	3R_1617867_SNP [dm3] 3R_5792145_SNP [dm6]	A	G	3.496e^-4	0.923	NON_SYNONYMOUS_CODING CG1218 DOWNSTREAM Rpn5	TF binding site mE1_TFBS_cnc mE1_TFBS_sens
3L	10432400	3L_10432400_SNP [dm3] 3L_10439300_SNP [dm6]	A	T	3.497e^-4	0.923	INTERGENIC	transposable element FlyBase
3L	12091014	3L_12091014_SNP [dm3] 3L_12097914_SNP [dm6]	A	C	3.504e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8802629	2R_8802629_SNP [dm3] 2R_12915124_SNP [dm6]	G	A	3.505e^-4	0.923	UPSTREAM NAT1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Kr
3L	14875574	3L_14875574_SNP [dm3] 3L_14882474_SNP [dm6]	A	C	3.513e^-4	0.923	DOWNSTREAM CG17839 INTERGENIC
2R	18704839	2R_18704839_SNP [dm3] 2R_22817334_SNP [dm6]	A	C	3.513e^-4	0.923	UPSTREAM CG30271 INTRON CG30271
X	12141720	X_12141720_SNP [dm3] X_12247687_SNP [dm6]	A	G	3.518e^-4	0.923	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	5567925	3R_5567925_SNP [dm3] 3R_9742203_SNP [dm6]	T	C	3.526e^-4	0.923	NON_SYNONYMOUS_CODING Pnn DOWNSTREAM CG34409 & 1 other
X	11255228	X_11255228_SNP [dm3] X_11361195_SNP [dm6]	C	A	3.527e^-4	0.923	UTR_3_PRIME hop DOWNSTREAM Pa1
3L	12090469	3L_12090469_SNP [dm3] 3L_12097369_SNP [dm6]	A	T	3.535e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18276598	3L_18276598_SNP [dm3] 3L_18283498_SNP [dm6]	T	A	3.539e^-4	0.923	INTERGENIC
3L	1588044	3L_1588044_SNP [dm3] 3L_1588044_SNP [dm6]	C	A	3.551e^-4	0.923	INTRON CG13917
3L	2885027	3L_2885027_SNP [dm3] 3L_2885027_SNP [dm6]	C	T	3.558e^-4	0.923	INTRON spz5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	11413905	2L_11413905_SNP [dm3] 2L_11413905_SNP [dm6]	T	A	3.568e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	12249308	X_12249308_SNP [dm3] X_12355275_SNP [dm6]	G	T	3.570e^-4	0.923	INTERGENIC
X	20006040	X_20006040_SNP [dm3] X_20112007_SNP [dm6]	T	C	3.571e^-4	0.923	INTERGENIC
3L	12820011	3L_12820011_SNP [dm3] 3L_12826911_SNP [dm6]	T	A	3.573e^-4	0.923	INTRON CG10960
2L	17156563	2L_17156563_SNP [dm3] 2L_17156563_SNP [dm6]	A	G	3.600e^-4	0.923	INTRON beat-IIIa & 1 other
3L	9601673	3L_9601673_SNP [dm3] 3L_9608573_SNP [dm6]	C	T	3.601e^-4	0.923	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9586747	2R_9586747_SNP [dm3] 2R_13699242_SNP [dm6]	T	C	3.607e^-4	0.923	INTRON fas
3R	1647220	3R_1647220_SNP [dm3] 3R_5821498_SNP [dm6]	T	A	3.609e^-4	0.923	UPSTREAM Hpr1 DOWNSTREAM CG2023 INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12597998	X_12597998_SNP [dm3] X_12703965_SNP [dm6]	G	T	3.612e^-4	0.923	INTRON Smr	TF binding site mE1_TFBS_HSA
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	3.623e^-4	0.923	INTRON shep
3L	9088315	3L_9088315_SNP [dm3] 3L_9095215_SNP [dm6]	A	G	3.625e^-4	0.923	DOWNSTREAM CG32032 INTERGENIC
X	13236598	X_13236598_SNP [dm3] X_13342565_SNP [dm6]	T	C	3.627e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10914946	3R_10914946_SNP [dm3] 3R_15089224_SNP [dm6]	A	T	3.643e^-4	0.923	INTRON CG6966	TF binding site mE1_TFBS_Trl
X	17118372	X_17118372_SNP [dm3] X_17224339_SNP [dm6]	T	C	3.648e^-4	0.923	UPSTREAM CG34327 DOWNSTREAM CG10598 INTERGENIC	TF binding site mE1_TFBS_inv
3L	14564735	3L_14564735_SNP [dm3] 3L_14571635_SNP [dm6]	A	C	3.649e^-4	0.923	INTERGENIC
X	17274077	X_17274077_SNP [dm3] X_17380044_SNP [dm6]	T	G	3.652e^-4	0.923	INTERGENIC
2L	4227059	2L_4227059_SNP [dm3] 2L_4227059_SNP [dm6]	C	A	3.664e^-4	0.923	START_GAINED CG3702 UTR_5_PRIME CG3702 UPSTREAM RpL40 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	1360326	3L_1360326_DEL [dm3] 3L_1360326_DEL [dm6]	GTG	G	3.665e^-4	0.923	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13385773	X_13385773_SNP [dm3] X_13491740_SNP [dm6]	T	A	3.677e^-4	0.923	INTRON Neto
3R	16305886	3R_16305886_SNP [dm3] 3R_20480164_SNP [dm6]	G	T	3.680e^-4	0.923	INTRON Gfrl
3R	26005472	3R_26005472_SNP [dm3] 3R_30179750_SNP [dm6]	C	T	3.683e^-4	0.923	SPLICE_SITE_REGION CG15530 UTR_3_PRIME CG15530 UPSTREAM Bet5 INTRON CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	19904740	2R_19904740_SNP [dm3] 2R_24017217_SNP [dm6]	C	A	3.687e^-4	0.923	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	3.688e^-4	0.923	UPSTREAM bbg INTRON bbg
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	3.706e^-4	0.923	INTRON CG34377
2R	13058583	2R_13058583_SNP [dm3] 2R_17171078_SNP [dm6]	T	A	3.717e^-4	0.923	INTERGENIC
3R	17755639	3R_17755639_SNP [dm3] 3R_21929917_SNP [dm6]	G	C	3.730e^-4	0.923	INTERGENIC
3R	10032483	3R_10032483_SNP [dm3] 3R_14206761_SNP [dm6]	C	G	3.733e^-4	0.923	INTRON Dop1R1
2L	2671552	2L_2671552_SNP [dm3] 2L_2671552_SNP [dm6]	G	C	3.740e^-4	0.923	SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_sens
3L	20821943	3L_20821943_SNP [dm3] 3L_20828843_SNP [dm6]	C	T	3.742e^-4	0.923	INTRON Pka-R1
3R	22525439	3R_22525439_SNP [dm3] 3R_26699717_SNP [dm6]	T	G	3.745e^-4	0.923	SPLICE_SITE_REGION amon SYNONYMOUS_CODING amon
2L	9027401	2L_9027401_SNP [dm3] 2L_9027401_SNP [dm6]	C	T	3.746e^-4	0.923	INTRON CG9582 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13773079	X_13773079_SNP [dm3] X_13879046_SNP [dm6]	C	A	3.750e^-4	0.923	INTRON mamo
3R	20197953	3R_20197953_SNP [dm3] 3R_24372231_SNP [dm6]	T	A	3.751e^-4	0.923	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20197965	3R_20197965_INS [dm3] 3R_24372243_INS [dm6]	A	ACAG	3.751e^-4	0.923	INTRON CG17782	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	3.751e^-4	0.923	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3L	9424128	3L_9424128_SNP [dm3] 3L_9431028_SNP [dm6]	C	T	3.772e^-4	0.923	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11585560	2R_11585560_SNP [dm3] 2R_15698055_SNP [dm6]	C	G	3.780e^-4	0.923	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1
X	8292337	X_8292337_SNP [dm3] X_8398304_SNP [dm6]	C	T	3.796e^-4	0.923	UPSTREAM CG10555 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14079535	3R_14079535_SNP [dm3] 3R_18253813_SNP [dm6]	T	C	3.806e^-4	0.923	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
2L	14451447	2L_14451447_SNP [dm3] 2L_14451447_SNP [dm6]	T	C	3.810e^-4	0.923	UPSTREAM CG15283 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	3.816e^-4	0.923	SYNONYMOUS_CODING Ir94e
X	3861374	X_3861374_SNP [dm3] X_3967341_SNP [dm6]	G	A	3.820e^-4	0.923	SPLICE_SITE_REGION CG6428 INTRON CG6428
3R	14457987	3R_14457987_SNP [dm3] 3R_18632265_SNP [dm6]	G	A	3.823e^-4	0.923	INTRON qin & 1 other
2R	6980601	2R_6980601_SNP [dm3] 2R_11093096_SNP [dm6]	A	T	3.825e^-4	0.923	INTRON luna
3L	14434532	3L_14434532_SNP [dm3] 3L_14441432_SNP [dm6]	A	T	3.826e^-4	0.923	INTRON bbg
X	482577	X_482577_SNP [dm3] X_588544_SNP [dm6]	T	C	3.830e^-4	0.923	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1748273	3L_1748273_DEL [dm3] 3L_1748273_DEL [dm6]	ATGTATATGTCT...	G	3.838e^-4	0.923	UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1748286	3L_1748286_MNP [dm3] 3L_1748286_MNP [dm6]	CTA	AAG	3.838e^-4	0.923	SPLICE_SITE_REGION CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	5967638	X_5967638_DEL [dm3] X_6073605_DEL [dm6]	TG	T	3.839e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
2L	10391180	2L_10391180_SNP [dm3] 2L_10391180_SNP [dm6]	C	T	3.841e^-4	0.923	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8308442	2L_8308442_SNP [dm3] 2L_8308442_SNP [dm6]	A	T	3.849e^-4	0.923	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18044819	3R_18044819_SNP [dm3] 3R_22219097_SNP [dm6]	T	A	3.850e^-4	0.923	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6137389	X_6137389_SNP [dm3] X_6243356_SNP [dm6]	G	A	3.853e^-4	0.923	SYNONYMOUS_CODING Rbcn-3A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4925970	3R_4925970_SNP [dm3] 3R_9100248_SNP [dm6]	C	T	3.854e^-4	0.923	INTRON pum
2L	7492026	2L_7492026_SNP [dm3] 2L_7492026_SNP [dm6]	A	T	3.857e^-4	0.923	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5999323	3R_5999323_SNP [dm3] 3R_10173601_SNP [dm6]	A	G	3.861e^-4	0.923	SYNONYMOUS_CODING CG12814
2L	18152727	2L_18152727_SNP [dm3] 2L_18152727_SNP [dm6]	C	T	3.865e^-4	0.923	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	3897602	2L_3897602_SNP [dm3] 2L_3897602_SNP [dm6]	A	C	3.866e^-4	0.923	INTRON capu
3R	26286358	3R_26286358_SNP [dm3] 3R_30460636_SNP [dm6]	A	G	3.885e^-4	0.923	UTR_5_PRIME CDase INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	16091210	X_16091210_INS [dm3] X_16197177_INS [dm6]	C	CC	3.887e^-4	0.923	INTERGENIC
3L	10266062	3L_10266062_SNP [dm3] 3L_10272962_SNP [dm6]	A	G	3.906e^-4	0.923	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2L	10089081	2L_10089081_SNP [dm3] 2L_10089081_SNP [dm6]	T	G	3.907e^-4	0.923	INTRON CG44153
2L	13022383	2L_13022383_SNP [dm3] 2L_13022383_SNP [dm6]	C	T	3.910e^-4	0.923	UTR_3_PRIME CG9932 DOWNSTREAM CG9932
2R	14270385	2R_14270385_SNP [dm3] 2R_18382880_SNP [dm6]	T	C	3.913e^-4	0.923	NON_SYNONYMOUS_CODING IM23
3L	17106305	3L_17106305_SNP [dm3] 3L_17113205_SNP [dm6]	G	T	3.917e^-4	0.923	INTRON Rbp6	TF binding site mE1_TFBS_cad
X	15317677	X_15317677_SNP [dm3] X_15423644_SNP [dm6]	C	T	3.937e^-4	0.923	INTRON Cngl
3L	11758762	3L_11758762_SNP [dm3] 3L_11765662_SNP [dm6]	T	A	3.938e^-4	0.923	UTR_5_PRIME CG6024 INTRON CG6024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	5590239	2L_5590239_SNP [dm3] 2L_5590239_SNP [dm6]	C	A	3.954e^-4	0.923	INTERGENIC
3L	12060803	3L_12060803_SNP [dm3] 3L_12067703_SNP [dm6]	A	T	3.954e^-4	0.923	UTR_3_PRIME Sema-5c
2R	18677727	2R_18677727_SNP [dm3] 2R_22790222_SNP [dm6]	A	G	3.955e^-4	0.923	INTRON CG42260
2L	16203693	2L_16203693_DEL [dm3] 2L_16203693_DEL [dm6]	ACATA	A	3.958e^-4	0.923	DOWNSTREAM CR44736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	14417942	2L_14417942_INS [dm3] 2L_14417942_INS [dm6]	T	TAGCT	3.970e^-4	0.923	UPSTREAM Pburs INTERGENIC
2R	4250883	2R_4250883_SNP [dm3] 2R_8363378_SNP [dm6]	G	A	3.974e^-4	0.923	UTR_3_PRIME swif & 1 other UPSTREAM whip INTRON pdm3
2L	5590246	2L_5590246_SNP [dm3] 2L_5590246_SNP [dm6]	G	A	3.979e^-4	0.923	INTERGENIC
3R	19153493	3R_19153493_DEL [dm3] 3R_23327771_DEL [dm6]	AAAAA	A	3.985e^-4	0.923	INTRON pnt
X	8998152	X_8998152_SNP [dm3] X_9104119_SNP [dm6]	G	A	3.986e^-4	0.923	UTR_3_PRIME Bx42 UPSTREAM CG7766 DOWNSTREAM Bx42	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5506631	3R_5506631_SNP [dm3] 3R_9680909_SNP [dm6]	T	C	3.990e^-4	0.923	SYNONYMOUS_CODING nmdyn-D7 DOWNSTREAM CG9444	TF binding site mE1_TFBS_sens
X	18934534	X_18934534_SNP [dm3] X_19040501_SNP [dm6]	C	T	3.992e^-4	0.923	INTERGENIC
2L	13671256	2L_13671256_SNP [dm3] 2L_13671256_SNP [dm6]	T	G	4.042e^-4	0.923	DOWNSTREAM CG18507 INTRON CG18507
3L	1585197	3L_1585197_SNP [dm3] 3L_1585197_SNP [dm6]	T	G	4.059e^-4	0.923	INTRON CG13917
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	4.059e^-4	0.923	INTRON 5-HT7
3L	1588852	3L_1588852_SNP [dm3] 3L_1588852_SNP [dm6]	T	G	4.062e^-4	0.923	UTR_5_PRIME CG13917 INTRON CG13917
X	3861865	X_3861865_SNP [dm3] X_3967832_SNP [dm6]	T	C	4.062e^-4	0.923	INTRON CG6428	TF binding site BDTNP1_TFBS_dl
2R	6097344	2R_6097344_SNP [dm3] 2R_10209839_SNP [dm6]	A	G	4.062e^-4	0.923	INTRON Hr46 & 1 other
3R	23031775	3R_23031775_SNP [dm3] 3R_27206053_SNP [dm6]	A	G	4.072e^-4	0.923	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17782821	3R_17782821_SNP [dm3] 3R_21957099_SNP [dm6]	A	G	4.073e^-4	0.923	INTRON Eip93F
3R	17782827	3R_17782827_SNP [dm3] 3R_21957105_SNP [dm6]	T	A	4.073e^-4	0.923	INTRON Eip93F
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	4.075e^-4	0.923	SYNONYMOUS_CODING CG31321
4	1192271	4_1192271_SNP [dm3] 4_1171645_SNP [dm6]	A	C	4.078e^-4	0.923	DOWNSTREAM pho INTERGENIC	transposable element FlyBase
3R	5866100	3R_5866100_SNP [dm3] 3R_10040378_SNP [dm6]	G	A	4.089e^-4	0.923	INTRON Mical
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	4.093e^-4	0.923	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	3419179	2L_3419179_SNP [dm3] 2L_3419179_SNP [dm6]	G	T	4.096e^-4	0.923	INTRON pgant2
3L	4929907	3L_4929907_INS [dm3] 3L_4929907_INS [dm6]	T	TGAATAATGATACGGAATAC...	4.103e^-4	0.923	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929910	3L_4929910_SNP [dm3] 3L_4929910_SNP [dm6]	T	A	4.103e^-4	0.923	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929912	3L_4929912_SNP [dm3] 3L_4929912_SNP [dm6]	C	T	4.103e^-4	0.923	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
X	5967555	X_5967555_SNP [dm3] X_6073522_SNP [dm6]	C	T	4.107e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
3L	1674871	3L_1674871_SNP [dm3] 3L_1674871_SNP [dm6]	G	T	4.109e^-4	0.923	UTR_5_PRIME CG7991
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	4.113e^-4	0.923	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	5215112	3R_5215112_SNP [dm3] 3R_9389390_SNP [dm6]	G	T	4.114e^-4	0.923	INTRON FER
3L	3429109	3L_3429109_SNP [dm3] 3L_3429109_SNP [dm6]	C	G	4.114e^-4	0.923	INTRON eIF5B
3R	21178015	3R_21178015_SNP [dm3] 3R_25352293_SNP [dm6]	G	A	4.115e^-4	0.923	INTRON Fur1
3R	23989160	3R_23989160_DEL [dm3] 3R_28163438_DEL [dm6]	TCTGGGGAAAGGCG...	C	4.123e^-4	0.923	INTRON CG34354
2L	4421210	2L_4421210_INS [dm3] 2L_4421210_INS [dm6]	A	AAA	4.127e^-4	0.923	INTRON CG15431	TF binding site mE1_TFBS_sbb
2L	4421212	2L_4421212_SNP [dm3] 2L_4421212_SNP [dm6]	T	A	4.127e^-4	0.923	INTRON CG15431	TF binding site mE1_TFBS_sbb
2R	18677781	2R_18677781_SNP [dm3] 2R_22790276_SNP [dm6]	A	C	4.132e^-4	0.923	INTRON CG42260
3R	22219015	3R_22219015_SNP [dm3] 3R_26393293_SNP [dm6]	T	A	4.142e^-4	0.923	INTERGENIC
2L	9023539	2L_9023539_SNP [dm3] 2L_9023539_SNP [dm6]	T	C	4.148e^-4	0.923	DOWNSTREAM CG9582 INTERGENIC
2L	5590240	2L_5590240_SNP [dm3] 2L_5590240_SNP [dm6]	T	A	4.152e^-4	0.923	INTERGENIC
3R	26009170	3R_26009170_SNP [dm3] 3R_30183448_SNP [dm6]	C	G	4.153e^-4	0.923	DOWNSTREAM CR44262 INTERGENIC
X	19461884	X_19461884_INS [dm3] X_19567851_INS [dm6]	T	TGAATAT	4.154e^-4	0.923	INTRON car
2L	11413878	2L_11413878_SNP [dm3] 2L_11413878_SNP [dm6]	C	T	4.156e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	12662296	3L_12662296_SNP [dm3] 3L_12669196_SNP [dm6]	C	G	4.156e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17115764	X_17115764_DEL [dm3] X_17221731_DEL [dm6]	ATGGAGGTGGCGGCCA...	A	4.165e^-4	0.923
2R	18956721	2R_18956721_SNP [dm3] 2R_23069198_SNP [dm6]	A	C	4.170e^-4	0.923	UPSTREAM l_2_k09913 INTRON l_2_k09913
2R	10310694	2R_10310694_SNP [dm3] 2R_14423189_SNP [dm6]	T	C	4.180e^-4	0.923	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9939930	2R_9939930_SNP [dm3] 2R_14052425_SNP [dm6]	T	C	4.183e^-4	0.923	INTRON mam
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	4.187e^-4	0.923	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3R	20287397	3R_20287397_SNP [dm3] 3R_24461675_SNP [dm6]	G	T	4.187e^-4	0.923	INTERGENIC
2R	4250891	2R_4250891_SNP [dm3] 2R_8363386_SNP [dm6]	T	G	4.187e^-4	0.923	UTR_3_PRIME swif & 1 other UPSTREAM whip INTRON pdm3
X	14254253	X_14254253_SNP [dm3] X_14360220_SNP [dm6]	T	G	4.194e^-4	0.923	INTRON dpr8
3L	23075349	3L_23075349_DEL [dm3] 3L_23082249_DEL [dm6]	GGACAATGCAGAATAAATTT...	G	4.196e^-4	0.923	INTERGENIC
2L	9018970	2L_9018970_SNP [dm3] 2L_9018970_SNP [dm6]	C	A	4.204e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6232982	2R_6232982_SNP [dm3] 2R_10345477_SNP [dm6]	T	C	4.205e^-4	0.923	INTRON CG42732
2L	12240245	2L_12240245_SNP [dm3] 2L_12240245_SNP [dm6]	A	T	4.218e^-4	0.923	INTRON aret
2R	8342949	2R_8342949_SNP [dm3] 2R_12455444_SNP [dm6]	G	T	4.220e^-4	0.923	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1744574	2L_1744574_INS [dm3] 2L_1744574_INS [dm6]	AGT	TTGAA	4.227e^-4	0.923	INTRON CG17646
2R	13357176	2R_13357176_SNP [dm3] 2R_17469671_SNP [dm6]	C	T	4.228e^-4	0.923	UTR_5_PRIME qkr54B UPSTREAM qkr54B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13982137	X_13982137_SNP [dm3] X_14088104_SNP [dm6]	T	G	4.243e^-4	0.923	INTERGENIC
3R	12488926	3R_12488926_SNP [dm3] 3R_16663204_SNP [dm6]	A	T	4.244e^-4	0.923	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17035289	X_17035289_SNP [dm3] X_17141256_SNP [dm6]	G	T	4.244e^-4	0.923	INTRON mei-218 & 1 other
3R	26638156	3R_26638156_SNP [dm3] 3R_30812434_SNP [dm6]	A	C	4.247e^-4	0.923	INTRON cindr	TF binding site mE1_TFBS_HSA
3L	11535135	3L_11535135_SNP [dm3] 3L_11542035_SNP [dm6]	A	G	4.248e^-4	0.923	SYNONYMOUS_CODING Mob2 INTRON Mob2
2R	15444018	2R_15444018_SNP [dm3] 2R_19556513_SNP [dm6]	G	A	4.252e^-4	0.923	INTRON sm
3L	14479641	3L_14479641_SNP [dm3] 3L_14486541_SNP [dm6]	A	T	4.259e^-4	0.923	INTRON bbg
3L	1748292	3L_1748292_SNP [dm3] 3L_1748292_SNP [dm6]	A	C	4.260e^-4	0.923	SPLICE_SITE_ACCEPTOR CG13921 UPSTREAM CG13921 INTRON CG13921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9804530	3L_9804530_SNP [dm3] 3L_9811430_SNP [dm6]	C	T	4.262e^-4	0.923	INTERGENIC
3L	14511725	3L_14511725_SNP [dm3] 3L_14518625_SNP [dm6]	T	C	4.271e^-4	0.923	DOWNSTREAM CG9592 INTRON bbg
2R	13419134	2R_13419134_SNP [dm3] 2R_17531629_SNP [dm6]	T	C	4.271e^-4	0.923	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3R	17242032	3R_17242032_SNP [dm3] 3R_21416310_SNP [dm6]	C	T	4.276e^-4	0.923	INTRON lbl
3L	18674087	3L_18674087_SNP [dm3] 3L_18680987_SNP [dm6]	G	T	4.281e^-4	0.923	DOWNSTREAM Sgf11 & 1 other INTERGENIC
3L	4122029	3L_4122029_SNP [dm3] 3L_4122029_SNP [dm6]	T	C	4.295e^-4	0.923	DOWNSTREAM ens INTRON Chd64
3L	18190297	3L_18190297_SNP [dm3] 3L_18197197_SNP [dm6]	A	C	4.295e^-4	0.923	DOWNSTREAM CR45234 INTERGENIC
3L	9506944	3L_9506944_SNP [dm3] 3L_9513844_SNP [dm6]	T	A	4.304e^-4	0.923	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
3L	21377068	3L_21377068_SNP [dm3] 3L_21383968_SNP [dm6]	G	C	4.306e^-4	0.923	INTRON rgn
X	2385838	X_2385838_SNP [dm3] X_2491805_SNP [dm6]	T	A	4.308e^-4	0.923	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	4.320e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18227246	3L_18227246_SNP [dm3] 3L_18234146_SNP [dm6]	T	C	4.330e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1334569	3L_1334569_SNP [dm3] 3L_1334569_SNP [dm6]	A	C	4.331e^-4	0.923	UTR_5_PRIME CG2211 UPSTREAM l_3_02640	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	4.335e^-4	0.923	INTERGENIC
3L	11948849	3L_11948849_SNP [dm3] 3L_11955749_SNP [dm6]	A	T	4.349e^-4	0.923	NON_SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
2R	14850681	2R_14850681_SNP [dm3] 2R_18963176_SNP [dm6]	A	C	4.372e^-4	0.923	INTERGENIC
2L	4297459	2L_4297459_SNP [dm3] 2L_4297459_SNP [dm6]	G	A	4.372e^-4	0.923	INTRON tutl
3R	17781235	3R_17781235_DEL [dm3] 3R_21955513_DEL [dm6]	CCACACCAC	C	4.374e^-4	0.923	INTRON Eip93F
2R	6180657	2R_6180657_INS [dm3] 2R_10293152_INS [dm6]	A	AATTGAGTAGC...	4.379e^-4	0.923	INTRON CAP
3L	10806347	3L_10806347_SNP [dm3] 3L_10813247_SNP [dm6]	T	C	4.380e^-4	0.923	INTERGENIC
3L	9804545	3L_9804545_SNP [dm3] 3L_9811445_SNP [dm6]	A	G	4.386e^-4	0.923	INTERGENIC
2L	4697678	2L_4697678_SNP [dm3] 2L_4697678_SNP [dm6]	G	C	4.388e^-4	0.923	INTRON CG34351
3R	17752800	3R_17752800_SNP [dm3] 3R_21927078_SNP [dm6]	C	T	4.401e^-4	0.923	INTERGENIC
3R	18470599	3R_18470599_SNP [dm3] 3R_22644877_SNP [dm6]	T	A	4.404e^-4	0.923	INTRON CG45058
X	19722043	X_19722043_SNP [dm3] X_19828010_SNP [dm6]	C	G	4.405e^-4	0.923	INTERGENIC
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	4.407e^-4	0.923	INTRON CG34377
2L	16730710	2L_16730710_SNP [dm3] 2L_16730710_SNP [dm6]	C	G	4.412e^-4	0.923	SYNONYMOUS_CODING CG17996 UTR_3_PRIME CG31812 DOWNSTREAM Prosbeta4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17781995	3R_17781995_SNP [dm3] 3R_21956273_SNP [dm6]	G	C	4.434e^-4	0.923	INTRON Eip93F
2L	19846339	2L_19846339_SNP [dm3] 2L_19846339_SNP [dm6]	T	A	4.442e^-4	0.923	INTRON sick	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	10689925	3L_10689925_SNP [dm3] 3L_10696825_SNP [dm6]	A	C	4.444e^-4	0.923	UTR_5_PRIME NijA
3L	15304197	3L_15304197_SNP [dm3] 3L_15311097_SNP [dm6]	A	G	4.455e^-4	0.923	UTR_3_PRIME CG7255
2L	6497754	2L_6497754_SNP [dm3] 2L_6497754_SNP [dm6]	T	A	4.459e^-4	0.923	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3L	14294525	3L_14294525_SNP [dm3] 3L_14301425_SNP [dm6]	G	A	4.477e^-4	0.923	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	13486706	3L_13486706_SNP [dm3] 3L_13493606_SNP [dm6]	A	G	4.483e^-4	0.923	INTRON Tgi
3R	20636076	3R_20636076_SNP [dm3] 3R_24810354_SNP [dm6]	G	A	4.483e^-4	0.923	INTRON CG5807	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	7042519	2R_7042519_SNP [dm3] 2R_11155014_SNP [dm6]	A	T	4.484e^-4	0.923	SYNONYMOUS_CODING CG13230 INTRON CG13229
3R	15639681	3R_15639681_SNP [dm3] 3R_19813959_SNP [dm6]	C	T	4.486e^-4	0.923	INTRON bnl
2R	14879690	2R_14879690_SNP [dm3] 2R_18992185_SNP [dm6]	C	T	4.488e^-4	0.923	INTRON tn
2R	12192519	2R_12192519_SNP [dm3] 2R_16305014_SNP [dm6]	G	A	4.488e^-4	0.923	EXON CR45232
3R	17753586	3R_17753586_SNP [dm3] 3R_21927864_SNP [dm6]	T	C	4.495e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	1596669	3R_1596669_SNP [dm3] 3R_5770947_SNP [dm6]	G	T	4.499e^-4	0.923	INTRON CG2082
2R	16618880	2R_16618880_SNP [dm3] 2R_20731375_SNP [dm6]	G	T	4.504e^-4	0.923	UPSTREAM CG13442 INTRON dpr
2R	17739638	2R_17739638_SNP [dm3] 2R_21852133_SNP [dm6]	T	C	4.523e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_cad
3L	12820051	3L_12820051_DEL [dm3] 3L_12826951_DEL [dm6]	AT	A	4.526e^-4	0.923	INTRON CG10960	TF binding site mE1_TFBS_cad
2L	14914950	2L_14914950_SNP [dm3] 2L_14914950_SNP [dm6]	T	C	4.539e^-4	0.923	INTRON CG42313
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	4.543e^-4	0.923	INTERGENIC
2L	7447987	2L_7447987_SNP [dm3] 2L_7447987_SNP [dm6]	C	A	4.544e^-4	0.923	UTR_5_PRIME santa-maria INTRON santa-maria
3L	8609862	3L_8609862_SNP [dm3] 3L_8616762_SNP [dm6]	C	G	4.545e^-4	0.923	UTR_3_PRIME CG6282 UPSTREAM S-Lap1
2L	221192	2L_221192_SNP [dm3] 2L_221192_SNP [dm6]	C	A	4.552e^-4	0.923	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16662939	2R_16662939_SNP [dm3] 2R_20775434_SNP [dm6]	T	A	4.561e^-4	0.923	DOWNSTREAM CG43709 & 1 other INTERGENIC
3R	1513689	3R_1513689_SNP [dm3] 3R_5687967_SNP [dm6]	G	T	4.563e^-4	0.923	INTRON plx
2L	19363646	2L_19363646_SNP [dm3] 2L_19363646_SNP [dm6]	C	A	4.565e^-4	0.923	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4375710	3L_4375710_SNP [dm3] 3L_4375710_SNP [dm6]	G	A	4.573e^-4	0.923	INTRON DopEcR
3R	1663223	3R_1663223_SNP [dm3] 3R_5837501_SNP [dm6]	C	A	4.578e^-4	0.923	INTRON CG1208	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16397509	2L_16397509_SNP [dm3] 2L_16397509_SNP [dm6]	G	A	4.580e^-4	0.923	INTERGENIC
2L	221136	2L_221136_SNP [dm3] 2L_221136_SNP [dm6]	C	G	4.585e^-4	0.923	INTRON kis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	13021316	2L_13021316_SNP [dm3] 2L_13021316_SNP [dm6]	C	A	4.587e^-4	0.923	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17753196	3R_17753196_SNP [dm3] 3R_21927474_SNP [dm6]	G	A	4.589e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_z
X	6995065	X_6995065_SNP [dm3] X_7101032_SNP [dm6]	T	G	4.589e^-4	0.923	INTRON CG4615
X	21453803	X_21453803_SNP [dm3] X_21582776_SNP [dm6]	A	C	4.602e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	15032559	3R_15032559_SNP [dm3] 3R_19206837_SNP [dm6]	G	A	4.606e^-4	0.923	INTERGENIC
3R	7276368	3R_7276368_SNP [dm3] 3R_11450646_SNP [dm6]	C	T	4.607e^-4	0.923	INTRON CG17230 & 1 other
3R	7277308	3R_7277308_SNP [dm3] 3R_11451586_SNP [dm6]	C	T	4.607e^-4	0.923	UPSTREAM sals INTRON CG17230 & 1 other
2L	5630997	2L_5630997_SNP [dm3] 2L_5630997_SNP [dm6]	C	T	4.608e^-4	0.923	DOWNSTREAM CR44822 INTRON CG31646	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14936752	3L_14936752_INS [dm3] 3L_14943652_INS [dm6]	A	AT	4.609e^-4	0.923	DOWNSTREAM CG13465 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	1665125	2R_1665125_SNP [dm3] 2R_5777620_SNP [dm6]	G	C	4.618e^-4	0.923	INTRON ZnT41F	TF binding site BDTNP1_TFBS_dl
3L	16523620	3L_16523620_SNP [dm3] 3L_16530520_SNP [dm6]	G	C	4.624e^-4	0.923	SYNONYMOUS_CODING CG43373
3R	18807675	3R_18807675_SNP [dm3] 3R_22981953_SNP [dm6]	T	A	4.632e^-4	0.923	INTRON Nha2
3L	14507741	3L_14507741_SNP [dm3] 3L_14514641_SNP [dm6]	T	C	4.638e^-4	0.923	INTRON bbg	enhancer mE1_CBP_Enhancers
2L	1952013	2L_1952013_SNP [dm3] 2L_1952013_SNP [dm6]	G	C	4.648e^-4	0.923	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18063138	3R_18063138_SNP [dm3] 3R_22237416_SNP [dm6]	C	T	4.656e^-4	0.923	INTRON SKIP
3L	9439762	3L_9439762_SNP [dm3] 3L_9446662_SNP [dm6]	T	C	4.663e^-4	0.923	UPSTREAM CG3529 DOWNSTREAM CG33926 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
2R	9967758	2R_9967758_SNP [dm3] 2R_14080253_SNP [dm6]	G	T	4.668e^-4	0.923	INTRON Prosap
3R	5383941	3R_5383941_SNP [dm3] 3R_9558219_SNP [dm6]	T	C	4.668e^-4	0.923	SYNONYMOUS_CODING AP-1mu DOWNSTREAM CG8199	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	4.670e^-4	0.923	DOWNSTREAM CG14017 INTRON GluRIIA
X	13982134	X_13982134_SNP [dm3] X_14088101_SNP [dm6]	G	A	4.676e^-4	0.923	INTERGENIC
3L	1333600	3L_1333600_SNP [dm3] 3L_1333600_SNP [dm6]	A	G	4.677e^-4	0.923	SYNONYMOUS_CODING CG2211 UPSTREAM msd5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	1610705	3R_1610705_SNP [dm3] 3R_5784983_SNP [dm6]	T	A	4.683e^-4	0.923	INTRON kat-60L1	TF binding site mE1_TFBS_chinmo
3L	14640167	3L_14640167_DEL [dm3] 3L_14647067_DEL [dm6]	AA	A	4.684e^-4	0.923	INTRON dlp
3L	3048727	3L_3048727_SNP [dm3] 3L_3048727_SNP [dm6]	G	C	4.685e^-4	0.923	SYNONYMOUS_CODING Sk2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	4.685e^-4	0.923	INTRON CAP
3R	26837766	3R_26837766_SNP [dm3] 3R_31012044_SNP [dm6]	G	C	4.695e^-4	0.923	INTRON 5-HT7
2L	13983884	2L_13983884_SNP [dm3] 2L_13983884_SNP [dm6]	G	A	4.699e^-4	0.923	SYNONYMOUS_CODING rk DOWNSTREAM NimC2	TF binding site mE1_TFBS_chinmo
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	4.707e^-4	0.923	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3R	22226575	3R_22226575_SNP [dm3] 3R_26400853_SNP [dm6]	T	G	4.711e^-4	0.923	INTERGENIC
X	17274596	X_17274596_SNP [dm3] X_17380563_SNP [dm6]	G	A	4.721e^-4	0.923	INTERGENIC
2L	4892641	2L_4892641_SNP [dm3] 2L_4892641_SNP [dm6]	C	A	4.738e^-4	0.923	UPSTREAM CR45716 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	4.742e^-4	0.923	UPSTREAM bbg INTRON bbg
3L	12820012	3L_12820012_SNP [dm3] 3L_12826912_SNP [dm6]	G	A	4.753e^-4	0.923	INTRON CG10960
3R	24693924	3R_24693924_SNP [dm3] 3R_28868202_SNP [dm6]	C	T	4.754e^-4	0.923	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
2R	17513991	2R_17513991_SNP [dm3] 2R_21626486_SNP [dm6]	T	A	4.756e^-4	0.923	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
3L	12090999	3L_12090999_SNP [dm3] 3L_12097899_SNP [dm6]	T	C	4.757e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2862053	2L_2862053_SNP [dm3] 2L_2862053_SNP [dm6]	T	C	4.760e^-4	0.923	UPSTREAM CG2991 INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	400222	2R_400222_SNP [dm3] 2R_4512717_SNP [dm6]	C	T	4.764e^-4	0.923	INTERGENIC	transposable element FlyBase
3R	5556038	3R_5556038_SNP [dm3] 3R_9730316_SNP [dm6]	T	C	4.764e^-4	0.923	UTR_5_PRIME FoxP DOWNSTREAM alphaTub85E	TF binding site BDTNP1_TFBS_dl
2R	14947219	2R_14947219_SNP [dm3] 2R_19059714_SNP [dm6]	G	C	4.765e^-4	0.923	UTR_5_PRIME CG15109 INTRON CG15109
3R	5543394	3R_5543394_SNP [dm3] 3R_9717672_SNP [dm6]	G	A	4.767e^-4	0.923	SYNONYMOUS_CODING hyd	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9357303	2R_9357303_SNP [dm3] 2R_13469798_SNP [dm6]	G	A	4.767e^-4	0.923	INTRON arr
3L	12085734	3L_12085734_SNP [dm3] 3L_12092634_SNP [dm6]	G	T	4.772e^-4	0.923	INTERGENIC
2R	4159025	2R_4159025_SNP [dm3] 2R_8271520_SNP [dm6]	A	T	4.778e^-4	0.923	INTERGENIC
2L	8658503	2L_8658503_SNP [dm3] 2L_8658503_SNP [dm6]	A	T	4.784e^-4	0.923	INTRON Sema-1a
2L	17706801	2L_17706801_SNP [dm3] 2L_17706801_SNP [dm6]	C	A	4.790e^-4	0.923	DOWNSTREAM CG43231 INTRON CadN
2L	18117230	2L_18117230_SNP [dm3] 2L_18117230_SNP [dm6]	A	C	4.802e^-4	0.923	INTERGENIC
3R	5534409	3R_5534409_SNP [dm3] 3R_9708687_SNP [dm6]	T	G	4.810e^-4	0.923	INTRON trbd	TF binding site mE1_TFBS_chinmo
X	5967484	X_5967484_SNP [dm3] X_6073451_SNP [dm6]	C	T	4.816e^-4	0.923	UPSTREAM Tsp5D INTRON Tsp5D
3L	1745949	3L_1745949_SNP [dm3] 3L_1745949_SNP [dm6]	A	T	4.817e^-4	0.923	UPSTREAM CG13921 DOWNSTREAM Gk INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Kr
3R	5993505	3R_5993505_SNP [dm3] 3R_10167783_SNP [dm6]	C	T	4.822e^-4	0.923	INTRON Best1
2R	8133171	2R_8133171_SNP [dm3] 2R_12245666_SNP [dm6]	C	T	4.822e^-4	0.923	UPSTREAM CG43244 INTERGENIC
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	4.834e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26013054	3R_26013054_SNP [dm3] 3R_30187332_SNP [dm6]	C	A	4.842e^-4	0.923	INTRON CG9747
3R	26318078	3R_26318078_SNP [dm3] 3R_30492356_SNP [dm6]	G	A	4.844e^-4	0.923	SPLICE_SITE_REGION PH4alphaMP DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2L	2834941	2L_2834941_SNP [dm3] 2L_2834941_SNP [dm6]	A	C	4.849e^-4	0.923	UTR_3_PRIME CG3119
3L	14475389	3L_14475389_SNP [dm3] 3L_14482289_SNP [dm6]	T	G	4.854e^-4	0.923	INTRON bbg
3L	9184119	3L_9184119_SNP [dm3] 3L_9191019_SNP [dm6]	A	G	4.858e^-4	0.923	INTERGENIC
3R	1672456	3R_1672456_SNP [dm3] 3R_5846734_SNP [dm6]	T	A	4.860e^-4	0.923	UPSTREAM CG14676 DOWNSTREAM CG1213 INTERGENIC
2L	3445642	2L_3445642_SNP [dm3] 2L_3445642_SNP [dm6]	T	C	4.863e^-4	0.923	UPSTREAM CG2772 INTERGENIC
2L	4818404	2L_4818404_SNP [dm3] 2L_4818404_SNP [dm6]	T	A	4.871e^-4	0.923	UPSTREAM mir-4910 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	7021008	2R_7021008_SNP [dm3] 2R_11133503_SNP [dm6]	C	T	4.879e^-4	0.923	INTERGENIC
X	19463999	X_19463999_SNP [dm3] X_19569966_SNP [dm6]	T	C	4.891e^-4	0.923	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3R	26096552	3R_26096552_SNP [dm3] 3R_30270830_SNP [dm6]	G	T	4.894e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	4.897e^-4	0.923	INTRON fz
2R	20589816	2R_20589816_SNP [dm3] 2R_24702293_SNP [dm6]	A	G	4.900e^-4	0.923	INTRON Mid1
3R	1582695	3R_1582695_SNP [dm3] 3R_5756973_SNP [dm6]	A	C	4.903e^-4	0.923	NON_SYNONYMOUS_CODING Sec8
2R	10306041	2R_10306041_SNP [dm3] 2R_14418536_SNP [dm6]	A	G	4.903e^-4	0.923	INTERGENIC
3R	11441508	3R_11441508_SNP [dm3] 3R_15615786_SNP [dm6]	A	G	4.907e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	21106881	2L_21106881_SNP [dm3] 2L_21106881_SNP [dm6]	T	G	4.908e^-4	0.923	UPSTREAM Nhe2 INTRON Nhe2 EXON CR44056	TF binding site BDTNP1_TFBS_dl
3L	12090994	3L_12090994_SNP [dm3] 3L_12097894_SNP [dm6]	G	A	4.917e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	4.918e^-4	0.923	UPSTREAM CG5890 INTRON CG5890
3L	9439987	3L_9439987_SNP [dm3] 3L_9446887_SNP [dm6]	C	G	4.923e^-4	0.923	UTR_5_PRIME CG3529 DOWNSTREAM CG33926	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_zfh1
3L	13291254	3L_13291254_SNP [dm3] 3L_13298154_SNP [dm6]	A	C	4.923e^-4	0.923	UPSTREAM CR45254 & 1 other DOWNSTREAM CR45253 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	4.933e^-4	0.923	DOWNSTREAM CR44629 & 1 other INTERGENIC
X	16933857	X_16933857_SNP [dm3] X_17039824_SNP [dm6]	A	C	4.937e^-4	0.923	INTRON CG45002
3R	24087912	3R_24087912_SNP [dm3] 3R_28262190_SNP [dm6]	G	T	4.938e^-4	0.923	DOWNSTREAM CG43125 INTERGENIC
3L	13259600	3L_13259600_SNP [dm3] 3L_13266500_SNP [dm6]	G	C	4.938e^-4	0.923	INTRON caps
3L	9182871	3L_9182871_SNP [dm3] 3L_9189771_SNP [dm6]	A	G	4.938e^-4	0.923	INTERGENIC
3R	22089276	3R_22089276_SNP [dm3] 3R_26263554_SNP [dm6]	A	T	4.950e^-4	0.923	INTRON CG6154
3L	14485718	3L_14485718_SNP [dm3] 3L_14492618_SNP [dm6]	A	T	4.952e^-4	0.923	INTRON bbg	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	1607535	3R_1607535_SNP [dm3] 3R_5781813_SNP [dm6]	G	A	4.961e^-4	0.923	UTR_5_PRIME kat-60L1 UPSTREAM CG2082 DOWNSTREAM jagn	TF binding site BDTNP1_TFBS_dl
3R	17824035	3R_17824035_SNP [dm3] 3R_21998313_SNP [dm6]	A	G	4.963e^-4	0.923	INTRON Eip93F
3R	15366098	3R_15366098_SNP [dm3] 3R_19540376_SNP [dm6]	A	C	4.966e^-4	0.923	INTRON Dys
3R	20198523	3R_20198523_SNP [dm3] 3R_24372801_SNP [dm6]	C	A	4.969e^-4	0.923	UPSTREAM CG17782 DOWNSTREAM CG17781 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5866017	2L_5866017_SNP [dm3] 2L_5866017_SNP [dm6]	T	C	4.969e^-4	0.923	INTRON rau
2R	9937868	2R_9937868_SNP [dm3] 2R_14050363_SNP [dm6]	T	G	4.979e^-4	0.923	INTRON mam
2L	22036784	2L_22036784_SNP [dm3] 2L_22036784_SNP [dm6]	T	A	4.988e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1795464	3L_1795464_SNP [dm3] 3L_1795464_SNP [dm6]	T	A	4.990e^-4	0.923	UTR_5_PRIME Cdc37 UPSTREAM alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	24606893	3R_24606893_SNP [dm3] 3R_28781171_SNP [dm6]	A	G	4.990e^-4	0.923	INTERGENIC
2L	2671530	2L_2671530_SNP [dm3] 2L_2671530_SNP [dm6]	C	G	4.991e^-4	0.923	NON_SYNONYMOUS_CODING Gr23a INTRON Gr23a	TF binding site mE1_TFBS_sens
3R	16308886	3R_16308886_SNP [dm3] 3R_20483164_SNP [dm6]	G	A	4.995e^-4	0.923	INTRON Gfrl
3L	23117287	3L_23117287_SNP [dm3] 3L_23124187_SNP [dm6]	A	G	4.999e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
2L	19398185	2L_19398185_SNP [dm3] 2L_19398185_SNP [dm6]	C	T	5.010e^-4	0.923	INTRON CG17544	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26184025	3R_26184025_SNP [dm3] 3R_30358303_SNP [dm6]	A	C	5.010e^-4	0.923	SYNONYMOUS_CODING hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12824965	3L_12824965_SNP [dm3] 3L_12831865_SNP [dm6]	A	G	5.019e^-4	0.923	INTRON CG10960	TF binding site mE1_TFBS_Trl
2L	10086877	2L_10086877_SNP [dm3] 2L_10086877_SNP [dm6]	C	A	5.022e^-4	0.923	INTRON CG44153
2L	3533363	2L_3533363_SNP [dm3] 2L_3533363_SNP [dm6]	T	C	5.028e^-4	0.923	DOWNSTREAM Che-13 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	14079539	3R_14079539_SNP [dm3] 3R_18253817_SNP [dm6]	C	A	5.031e^-4	0.923	STOP_GAINED Ada2a INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
X	3532686	X_3532686_DEL [dm3] X_3638653_DEL [dm6]	TTGTTT	T	5.035e^-4	0.923	INTRON AstA-R1
3R	17780986	3R_17780986_SNP [dm3] 3R_21955264_SNP [dm6]	G	C	5.042e^-4	0.923	INTRON Eip93F
2L	16230365	2L_16230365_SNP [dm3] 2L_16230365_SNP [dm6]	A	T	5.044e^-4	0.923	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	11150748	3L_11150748_SNP [dm3] 3L_11157648_SNP [dm6]	A	G	5.052e^-4	0.923	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	14259871	3R_14259871_SNP [dm3] 3R_18434149_SNP [dm6]	A	T	5.063e^-4	0.923	INTRON fru	TF binding site mE1_TFBS_cad
3L	12326259	3L_12326259_SNP [dm3] 3L_12333159_SNP [dm6]	G	C	5.072e^-4	0.923	INTRON CG32105	TF binding site mE1_TFBS_HSA
2R	9057790	2R_9057790_SNP [dm3] 2R_13170285_SNP [dm6]	G	A	5.079e^-4	0.923	INTRON CR45142 & 1 other
X	18414525	X_18414525_SNP [dm3] X_18520492_SNP [dm6]	C	T	5.080e^-4	0.923	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	21544517	3L_21544517_SNP [dm3] 3L_21551417_SNP [dm6]	G	A	5.083e^-4	0.923	SYNONYMOUS_CODING Wnk
3L	21587685	3L_21587685_SNP [dm3] 3L_21594585_SNP [dm6]	A	T	5.084e^-4	0.923	UPSTREAM CR43940 INTRON TfAP-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17910370	3R_17910370_SNP [dm3] 3R_22084648_SNP [dm6]	C	T	5.087e^-4	0.923	DOWNSTREAM CG5778 INTERGENIC
2R	3319026	2R_3319026_SNP [dm3] 2R_7431521_SNP [dm6]	A	C	5.091e^-4	0.923	DOWNSTREAM CR44204 INTRON so	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14434938	3L_14434938_SNP [dm3] 3L_14441838_SNP [dm6]	G	A	5.092e^-4	0.923	INTRON bbg
2L	1372286	2L_1372286_SNP [dm3] 2L_1372286_SNP [dm6]	C	A	5.095e^-4	0.923	INTERGENIC
3L	12978751	3L_12978751_SNP [dm3] 3L_12985651_SNP [dm6]	T	A	5.102e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	9815480	3R_9815480_SNP [dm3] 3R_13989758_SNP [dm6]	T	C	5.127e^-4	0.923	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26006475	3R_26006475_SNP [dm3] 3R_30180753_SNP [dm6]	A	T	5.138e^-4	0.923	DOWNSTREAM CG15530 INTRON Bet5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	9082733	3L_9082733_SNP [dm3] 3L_9089633_SNP [dm6]	A	C	5.139e^-4	0.923	NON_SYNONYMOUS_CODING Tequila	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14469426	3L_14469426_SNP [dm3] 3L_14476326_SNP [dm6]	A	G	5.147e^-4	0.923	INTRON bbg	TF binding site mE1_TFBS_Trl
X	17905546	X_17905546_DEL [dm3] X_18011513_DEL [dm6]	AAAAGGCACA	A	5.152e^-4	0.923	INTRON Sh

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.057e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1591 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	2.146e^-6	0.981	INTRON twin
X	14008670	X_14008670_SNP [dm3] X_14114637_SNP [dm6]	G	A	3.341e^-6	0.981	EXON CR44657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17755607	3R_17755607_SNP [dm3] 3R_21929885_SNP [dm6]	A	G	6.623e^-6	0.981	INTERGENIC
3R	21182090	3R_21182090_SNP [dm3] 3R_25356368_SNP [dm6]	G	C	6.894e^-6	0.981	INTRON Fur1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16408879	3L_16408879_SNP [dm3] 3L_16415779_SNP [dm6]	C	T	7.196e^-6	0.981	NON_SYNONYMOUS_CODING CG4573 DOWNSTREAM TMS1
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	7.699e^-6	0.981	INTRON FMRFaR
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	8.396e^-6	0.981	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	16854957	2R_16854957_SNP [dm3] 2R_20967452_SNP [dm6]	G	A	9.848e^-6	0.981	INTERGENIC
3L	9408847	3L_9408847_SNP [dm3] 3L_9415747_SNP [dm6]	G	A	1.166e^-5	0.981	DOWNSTREAM CG3982 INTRON CG3967
3L	8411951	3L_8411951_INS [dm3] 3L_8418851_INS [dm6]	G	GCCAG	1.199e^-5	0.981	INTRON CG32354
3L	3007752	3L_3007752_SNP [dm3] 3L_3007752_SNP [dm6]	G	C	1.296e^-5	0.981	INTRON FMRFaR
3L	14501834	3L_14501834_SNP [dm3] 3L_14508734_SNP [dm6]	A	T	1.449e^-5	0.981	NON_SYNONYMOUS_CODING bbg
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.464e^-5	0.981	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	7447883	2L_7447883_SNP [dm3] 2L_7447883_SNP [dm6]	T	A	1.512e^-5	0.981	UTR_5_PRIME santa-maria INTRON santa-maria
2L	9043145	2L_9043145_SNP [dm3] 2L_9043145_SNP [dm6]	T	C	1.628e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	1.688e^-5	0.981	INTRON HDAC4
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	1.690e^-5	0.981	INTERGENIC
2R	10897172	2R_10897172_SNP [dm3] 2R_15009667_SNP [dm6]	C	A	1.729e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3007740	3L_3007740_INS [dm3] 3L_3007740_INS [dm6]	T	TAAAAAAATATGTTTTT...	1.860e^-5	0.981	INTRON FMRFaR
3R	17755562	3R_17755562_SNP [dm3] 3R_21929840_SNP [dm6]	T	C	2.012e^-5	0.981	INTERGENIC
3L	14507741	3L_14507741_SNP [dm3] 3L_14514641_SNP [dm6]	T	C	2.181e^-5	0.981	INTRON bbg	enhancer mE1_CBP_Enhancers
2L	7447884	2L_7447884_SNP [dm3] 2L_7447884_SNP [dm6]	A	T	2.298e^-5	0.981	UTR_5_PRIME santa-maria INTRON santa-maria
3R	17755586	3R_17755586_SNP [dm3] 3R_21929864_SNP [dm6]	C	A	2.367e^-5	0.981	INTERGENIC
2L	16311841	2L_16311841_SNP [dm3] 2L_16311841_SNP [dm6]	A	G	2.387e^-5	0.981	INTRON fzy	TF binding site mE1_TFBS_sens
3L	12343191	3L_12343191_SNP [dm3] 3L_12350091_SNP [dm6]	G	A	2.406e^-5	0.981	INTRON CrzR
3L	16662038	3L_16662038_SNP [dm3] 3L_16668938_SNP [dm6]	T	C	2.543e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	2.593e^-5	0.981	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	2.593e^-5	0.981	INTRON FMRFaR
3L	3007835	3L_3007835_SNP [dm3] 3L_3007835_SNP [dm6]	C	T	2.664e^-5	0.981	INTRON FMRFaR
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	2.745e^-5	0.981	INTRON spir
3L	14504531	3L_14504531_SNP [dm3] 3L_14511431_SNP [dm6]	G	T	2.760e^-5	0.981	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_sens
X	11074231	X_11074231_SNP [dm3] X_11180198_SNP [dm6]	G	A	2.813e^-5	0.981	INTERGENIC
2L	3977876	2L_3977876_SNP [dm3] 2L_3977876_SNP [dm6]	C	T	2.841e^-5	0.981	INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21465781	3R_21465781_SNP [dm3] 3R_25640059_SNP [dm6]	C	T	2.868e^-5	0.981	INTRON jigr1
3R	20032700	3R_20032700_SNP [dm3] 3R_24206978_SNP [dm6]	T	C	2.884e^-5	0.981	INTRON twin
3L	6680510	3L_6680510_SNP [dm3] 3L_6687410_SNP [dm6]	G	C	2.939e^-5	0.981	INTERGENIC
3L	3007694	3L_3007694_SNP [dm3] 3L_3007694_SNP [dm6]	T	A	3.028e^-5	0.981	INTRON FMRFaR
3L	2156323	3L_2156323_SNP [dm3] 3L_2156323_SNP [dm6]	T	C	3.031e^-5	0.981	INTRON CG15822
2L	4892641	2L_4892641_SNP [dm3] 2L_4892641_SNP [dm6]	C	A	3.097e^-5	0.981	UPSTREAM CR45716 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13173739	X_13173739_SNP [dm3] X_13279706_SNP [dm6]	T	C	3.129e^-5	0.981	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3L	15876268	3L_15876268_SNP [dm3] 3L_15883168_SNP [dm6]	G	T	3.160e^-5	0.981	INTRON pHCl
3R	17670361	3R_17670361_SNP [dm3] 3R_21844639_SNP [dm6]	G	C	3.307e^-5	0.981	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d	TF binding site mE1_TFBS_HSA
3L	7162502	3L_7162502_SNP [dm3] 3L_7169402_SNP [dm6]	A	G	3.367e^-5	0.981	INTRON Dscam2	TF binding site mE1_TFBS_HSA
3L	14875306	3L_14875306_SNP [dm3] 3L_14882206_SNP [dm6]	A	G	3.432e^-5	0.981	UTR_3_PRIME CG17839
3R	21465784	3R_21465784_SNP [dm3] 3R_25640062_SNP [dm6]	T	C	3.612e^-5	0.981	INTRON jigr1
3L	8655862	3L_8655862_DEL [dm3] 3L_8662762_DEL [dm6]	GATGGG	G	4.082e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	4.105e^-5	0.981	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	4.107e^-5	0.981	INTRON rgn
3R	21147043	3R_21147043_SNP [dm3] 3R_25321321_SNP [dm6]	T	A	4.316e^-5	0.981	NON_SYNONYMOUS_CODING CG10562
2L	10374282	2L_10374282_SNP [dm3] 2L_10374282_SNP [dm6]	A	T	4.388e^-5	0.981	UTR_3_PRIME CG33303 UPSTREAM rho-5	TF binding site mE1_TFBS_cad
X	22046256	X_22046256_SNP [dm3] X_22644420_SNP [dm6]	T	A	4.388e^-5	0.981	INTERGENIC
3L	21549626	3L_21549626_SNP [dm3] 3L_21556526_SNP [dm6]	G	C	4.398e^-5	0.981	NON_SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
X	17675537	X_17675537_SNP [dm3] X_17781504_SNP [dm6]	T	A	4.402e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	4.409e^-5	0.981	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	4.415e^-5	0.981	INTRON FMRFaR
3R	26120079	3R_26120079_SNP [dm3] 3R_30294357_SNP [dm6]	C	T	4.437e^-5	0.981	INTRON hdc
X	3224946	X_3224946_SNP [dm3] X_3330913_SNP [dm6]	G	C	4.472e^-5	0.981	INTRON CR44886 & 1 other
3R	17763847	3R_17763847_DEL [dm3] 3R_21938125_DEL [dm6]	CG	C	4.472e^-5	0.981	INTERGENIC
3L	14456569	3L_14456569_SNP [dm3] 3L_14463469_SNP [dm6]	C	T	4.474e^-5	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21456191	X_21456191_SNP [dm3] X_21585164_SNP [dm6]	A	T	4.498e^-5	0.981	DOWNSTREAM CR44711 INTERGENIC	transposable element FlyBase
3L	3859391	3L_3859391_SNP [dm3] 3L_3859391_SNP [dm6]	A	G	4.565e^-5	0.981	SPLICE_SITE_REGION Awh INTRON Awh	TF binding site mE1_TFBS_cad
2L	19922119	2L_19922119_SNP [dm3] 2L_19922119_SNP [dm6]	G	A	4.619e^-5	0.981	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	21146989	3R_21146989_SNP [dm3] 3R_25321267_SNP [dm6]	C	T	4.649e^-5	0.981	UTR_3_PRIME CG10562
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	4.704e^-5	0.981	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	21549601	3L_21549601_SNP [dm3] 3L_21556501_SNP [dm6]	A	G	4.733e^-5	0.981	SYNONYMOUS_CODING CG7173	TF binding site mE1_TFBS_chinmo
3L	3007737	3L_3007737_SNP [dm3] 3L_3007737_SNP [dm6]	C	T	4.799e^-5	0.981	INTRON FMRFaR
3R	27231677	3R_27231677_SNP [dm3] 3R_31405955_SNP [dm6]	A	G	4.804e^-5	0.981	SPLICE_SITE_REGION Gprk2 UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
X	13173679	X_13173679_SNP [dm3] X_13279646_SNP [dm6]	A	G	4.879e^-5	0.981	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
3L	4096718	3L_4096718_SNP [dm3] 3L_4096718_SNP [dm6]	C	T	4.892e^-5	0.981	INTRON CG14995	TF binding site mE1_TFBS_cad
2L	4891649	2L_4891649_SNP [dm3] 2L_4891649_SNP [dm6]	A	C	4.924e^-5	0.981	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25320266	3R_25320266_SNP [dm3] 3R_29494544_SNP [dm6]	T	C	4.928e^-5	0.981	UPSTREAM CG2010 DOWNSTREAM Diedel INTERGENIC
3R	17763852	3R_17763852_SNP [dm3] 3R_21938130_SNP [dm6]	T	A	4.940e^-5	0.981	INTERGENIC
3L	16868955	3L_16868955_SNP [dm3] 3L_16875855_SNP [dm6]	T	A	4.983e^-5	0.981	INTRON Lmpt	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	5.144e^-5	0.981	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17670385	3R_17670385_SNP [dm3] 3R_21844663_SNP [dm6]	G	A	5.249e^-5	0.981	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
3L	3007817	3L_3007817_SNP [dm3] 3L_3007817_SNP [dm6]	C	T	5.278e^-5	0.981	INTRON FMRFaR
3L	13486706	3L_13486706_SNP [dm3] 3L_13493606_SNP [dm6]	A	G	5.289e^-5	0.981	INTRON Tgi
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	5.418e^-5	0.981	UPSTREAM bbg INTRON bbg
3R	19825111	3R_19825111_SNP [dm3] 3R_23999389_SNP [dm6]	G	T	5.518e^-5	0.981	SYNONYMOUS_CODING KrT95D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10284341	3L_10284341_DEL [dm3] 3L_10291241_DEL [dm6]	TT	T	5.595e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9942880	2R_9942880_SNP [dm3] 2R_14055375_SNP [dm6]	C	T	5.597e^-5	0.981	INTRON mam
3L	15280377	3L_15280377_SNP [dm3] 3L_15287277_SNP [dm6]	G	C	5.623e^-5	0.981	INTERGENIC
3R	8433693	3R_8433693_SNP [dm3] 3R_12607971_SNP [dm6]	G	A	5.650e^-5	0.981	INTERGENIC
3L	14457892	3L_14457892_SNP [dm3] 3L_14464792_SNP [dm6]	C	T	5.728e^-5	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	5.790e^-5	0.981	INTRON spir & 1 other
3L	2831855	3L_2831855_SNP [dm3] 3L_2831855_SNP [dm6]	A	T	5.982e^-5	0.981	INTRON CG43444
3R	8435592	3R_8435592_SNP [dm3] 3R_12609870_SNP [dm6]	A	T	5.996e^-5	0.981	INTERGENIC
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	6.004e^-5	0.981	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	14501913	3L_14501913_SNP [dm3] 3L_14508813_SNP [dm6]	A	G	6.100e^-5	0.981	NON_SYNONYMOUS_CODING bbg
3L	14501929	3L_14501929_SNP [dm3] 3L_14508829_SNP [dm6]	T	G	6.100e^-5	0.981	NON_SYNONYMOUS_CODING bbg
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	6.294e^-5	0.981	INTRON hdc
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	6.373e^-5	0.981	UPSTREAM bbg INTRON bbg
2L	12140639	2L_12140639_SNP [dm3] 2L_12140639_SNP [dm6]	A	T	6.452e^-5	0.981	DOWNSTREAM Gr33a INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	6.459e^-5	0.981	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	6.621e^-5	0.981	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	17339520	3R_17339520_SNP [dm3] 3R_21513798_SNP [dm6]	A	T	6.718e^-5	0.981	DOWNSTREAM C15 INTERGENIC
2L	9817240	2L_9817240_SNP [dm3] 2L_9817240_SNP [dm6]	T	C	6.817e^-5	0.981	INTRON nAChRalpha6
2R	9446206	2R_9446206_SNP [dm3] 2R_13558701_SNP [dm6]	A	C	6.878e^-5	0.981	SYNONYMOUS_CODING CG13334 UPSTREAM snoRNA:2R:9445205 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	6.911e^-5	0.981	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	6.911e^-5	0.981	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	3008347	3L_3008347_SNP [dm3] 3L_3008347_SNP [dm6]	C	G	6.983e^-5	0.981	INTRON FMRFaR
3L	14501859	3L_14501859_SNP [dm3] 3L_14508759_SNP [dm6]	C	T	7.015e^-5	0.981	NON_SYNONYMOUS_CODING bbg
X	3904226	X_3904226_SNP [dm3] X_4010193_SNP [dm6]	T	G	7.043e^-5	0.981	INTERGENIC
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	7.306e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3309327	2R_3309327_SNP [dm3] 2R_7421822_SNP [dm6]	A	G	7.392e^-5	0.981	DOWNSTREAM CR44202 INTRON so	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18574425	3R_18574425_SNP [dm3] 3R_22748703_SNP [dm6]	C	A	7.394e^-5	0.981	SYNONYMOUS_CODING CG31139 START_GAINED CG31139 UTR_5_PRIME CG31139 DOWNSTREAM rumi	TF binding site mE1_TFBS_cad
2R	16436473	2R_16436473_SNP [dm3] 2R_20548968_SNP [dm6]	A	G	7.462e^-5	0.981	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
2R	16692673	2R_16692673_SNP [dm3] 2R_20805168_SNP [dm6]	C	T	7.536e^-5	0.981	INTERGENIC
2L	17409720	2L_17409720_SNP [dm3] 2L_17409720_SNP [dm6]	T	A	7.642e^-5	0.981	UTR_3_PRIME Rpb11 UPSTREAM CG15141 DOWNSTREAM CLIP-190	TF binding site BDTNP1_TFBS_dl
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	7.664e^-5	0.981	SYNONYMOUS_CODING S-Lap2
3L	9336948	3L_9336948_SNP [dm3] 3L_9343848_SNP [dm6]	C	T	7.699e^-5	0.981	UPSTREAM PGRP-LC INTRON PGRP-LC
3L	14711816	3L_14711816_SNP [dm3] 3L_14718716_SNP [dm6]	T	C	7.708e^-5	0.981	INTRON ome
3R	22987083	3R_22987083_SNP [dm3] 3R_27161361_SNP [dm6]	A	T	7.811e^-5	0.981	SYNONYMOUS_CODING CG5909
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	7.840e^-5	0.981	INTRON CG34377
2R	17096718	2R_17096718_SNP [dm3] 2R_21209213_SNP [dm6]	C	G	7.844e^-5	0.981	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
3L	10683410	3L_10683410_INS [dm3] 3L_10690310_INS [dm6]	A	AC	7.862e^-5	0.981	UTR_3_PRIME simj UPSTREAM CG11811
2R	10863845	2R_10863845_INS [dm3] 2R_14976340_INS [dm6]	A	AGGTGCTATCTG...	8.120e^-5	0.981	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14501938	3L_14501938_SNP [dm3] 3L_14508838_SNP [dm6]	T	G	8.177e^-5	0.981	NON_SYNONYMOUS_CODING bbg
3R	3811339	3R_3811339_SNP [dm3] 3R_7985617_SNP [dm6]	A	C	8.435e^-5	0.981	INTRON CG2781
2L	1298139	2L_1298139_SNP [dm3] 2L_1298139_SNP [dm6]	C	T	8.483e^-5	0.981	INTERGENIC
3R	17753168	3R_17753168_SNP [dm3] 3R_21927446_SNP [dm6]	C	A	8.540e^-5	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	18574597	3R_18574597_SNP [dm3] 3R_22748875_SNP [dm6]	T	C	8.594e^-5	0.981	DOWNSTREAM rumi INTRON CG31139	TF binding site mE1_TFBS_cad
2R	6406088	2R_6406088_SNP [dm3] 2R_10518583_SNP [dm6]	G	A	8.677e^-5	0.981	DOWNSTREAM lola INTRON lola
3L	8059361	3L_8059361_SNP [dm3] 3L_8066261_SNP [dm6]	A	G	8.729e^-5	0.981	UPSTREAM tRNA:CR32361 & 1 other INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16874376	3L_16874376_SNP [dm3] 3L_16881276_SNP [dm6]	T	C	8.800e^-5	0.981	INTRON Lmpt
2R	10538188	2R_10538188_SNP [dm3] 2R_14650683_SNP [dm6]	A	T	8.851e^-5	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3008224	3L_3008224_SNP [dm3] 3L_3008224_SNP [dm6]	A	G	8.920e^-5	0.981	INTRON FMRFaR
3L	18134818	3L_18134818_SNP [dm3] 3L_18141718_SNP [dm6]	A	G	8.980e^-5	0.981	INTRON gk
3R	20884811	3R_20884811_SNP [dm3] 3R_25059089_SNP [dm6]	T	C	9.007e^-5	0.981	UTR_5_PRIME Unc-13-4B INTRON Unc-13-4B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	21380294	3R_21380294_SNP [dm3] 3R_25554572_SNP [dm6]	C	A	9.100e^-5	0.981	INTRON msi
2L	19882198	2L_19882198_SNP [dm3] 2L_19882198_SNP [dm6]	C	G	9.210e^-5	0.981	INTRON sick
3L	3009006	3L_3009006_SNP [dm3] 3L_3009006_SNP [dm6]	C	T	9.251e^-5	0.981	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	9.343e^-5	0.981	INTRON CG7120
X	10399301	X_10399301_INS [dm3] X_10505268_INS [dm6]	T	TAGATTTCAAATCAGT...	9.428e^-5	0.981	INTRON spri
3L	10644836	3L_10644836_SNP [dm3] 3L_10651736_SNP [dm6]	G	A	9.459e^-5	0.981	INTRON CG32066
2L	10291234	2L_10291234_SNP [dm3] 2L_10291234_SNP [dm6]	G	A	9.692e^-5	0.981	INTRON CG5604	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4891660	2L_4891660_SNP [dm3] 2L_4891660_SNP [dm6]	G	T	9.804e^-5	0.981	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21544517	3L_21544517_SNP [dm3] 3L_21551417_SNP [dm6]	G	A	9.894e^-5	0.981	SYNONYMOUS_CODING Wnk
3R	19230159	3R_19230159_SNP [dm3] 3R_23404437_SNP [dm6]	T	C	1.000e^-4	0.981	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
2L	15623420	2L_15623420_SNP [dm3] 2L_15623420_SNP [dm6]	G	C	1.002e^-4	0.981	NON_SYNONYMOUS_CODING Or35a
3L	12882661	3L_12882661_SNP [dm3] 3L_12889561_SNP [dm6]	A	T	1.009e^-4	0.981	UPSTREAM CG43894 DOWNSTREAM CG14120 EXON CR45748
3L	17174776	3L_17174776_SNP [dm3] 3L_17181676_SNP [dm6]	G	A	1.016e^-4	0.981	INTRON Rbp6
X	11293511	X_11293511_INS [dm3] X_11399478_INS [dm6]	T	TTT	1.022e^-4	0.981	INTRON dlg1	TF binding site mE1_TFBS_HSA
2R	17027226	2R_17027226_SNP [dm3] 2R_21139721_SNP [dm6]	T	G	1.027e^-4	0.981	UTR_5_PRIME Magi INTRON Magi
3L	11636504	3L_11636504_SNP [dm3] 3L_11643404_SNP [dm6]	C	A	1.031e^-4	0.981	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
3R	10915445	3R_10915445_SNP [dm3] 3R_15089723_SNP [dm6]	G	T	1.034e^-4	0.981	INTRON CG6966	TF binding site mE1_TFBS_Trl
2L	15623430	2L_15623430_SNP [dm3] 2L_15623430_SNP [dm6]	C	T	1.035e^-4	0.981	SYNONYMOUS_CODING Or35a
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	1.035e^-4	0.981	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2L	7197266	2L_7197266_SNP [dm3] 2L_7197266_SNP [dm6]	A	G	1.047e^-4	0.981	INTRON CG4502
X	10399304	X_10399304_SNP [dm3] X_10505271_SNP [dm6]	A	T	1.051e^-4	0.981	INTRON spri
2R	16436450	2R_16436450_SNP [dm3] 2R_20548945_SNP [dm6]	T	C	1.051e^-4	0.981	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	882350	2R_882350_SNP [dm3] 2R_4994845_SNP [dm6]	A	T	1.052e^-4	0.981	INTRON Ir41a	transposable element FlyBase
3L	10264877	3L_10264877_SNP [dm3] 3L_10271777_SNP [dm6]	G	A	1.055e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	10535972	2R_10535972_SNP [dm3] 2R_14648467_SNP [dm6]	C	T	1.067e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9270798	2R_9270798_SNP [dm3] 2R_13383293_SNP [dm6]	T	G	1.070e^-4	0.981	INTERGENIC
3R	26089889	3R_26089889_SNP [dm3] 3R_30264167_SNP [dm6]	T	G	1.084e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27493056	3R_27493056_SNP [dm3] 3R_31667334_SNP [dm6]	G	A	1.085e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17753586	3R_17753586_SNP [dm3] 3R_21927864_SNP [dm6]	T	C	1.098e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	17753196	3R_17753196_SNP [dm3] 3R_21927474_SNP [dm6]	G	A	1.101e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	27490916	3R_27490916_SNP [dm3] 3R_31665194_SNP [dm6]	G	T	1.110e^-4	0.981	DOWNSTREAM kek6 INTERGENIC
X	14297345	X_14297345_SNP [dm3] X_14403312_SNP [dm6]	G	A	1.111e^-4	0.981	INTRON dpr8
2R	16726936	2R_16726936_SNP [dm3] 2R_20839431_SNP [dm6]	T	C	1.114e^-4	0.981	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	1.120e^-4	0.981	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
2R	19904740	2R_19904740_SNP [dm3] 2R_24017217_SNP [dm6]	C	A	1.121e^-4	0.981	UPSTREAM CG3121 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	21773910	2L_21773910_SNP [dm3] 2L_21773910_SNP [dm6]	T	A	1.129e^-4	0.981	NON_SYNONYMOUS_CODING CG31612	TF binding site mE1_TFBS_sens
3R	25194264	3R_25194264_SNP [dm3] 3R_29368542_SNP [dm6]	C	G	1.134e^-4	0.981	UPSTREAM CG45546 INTERGENIC
3R	17755608	3R_17755608_SNP [dm3] 3R_21929886_SNP [dm6]	A	C	1.136e^-4	0.981	INTERGENIC
3L	10683403	3L_10683403_DEL [dm3] 3L_10690303_DEL [dm6]	TT	C	1.139e^-4	0.981	UTR_3_PRIME simj UPSTREAM CG11811 DOWNSTREAM simj
3R	17339518	3R_17339518_SNP [dm3] 3R_21513796_SNP [dm6]	T	C	1.139e^-4	0.981	DOWNSTREAM C15 INTERGENIC
3R	17339525	3R_17339525_SNP [dm3] 3R_21513803_SNP [dm6]	A	G	1.142e^-4	0.981	DOWNSTREAM C15 INTERGENIC
3L	13320524	3L_13320524_SNP [dm3] 3L_13327424_SNP [dm6]	G	T	1.143e^-4	0.981	INTERGENIC
2R	16803794	2R_16803794_INS [dm3] 2R_20916289_INS [dm6]	A	AAA	1.145e^-4	0.981	UPSTREAM Rx INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3122564	3L_3122564_SNP [dm3] 3L_3122564_SNP [dm6]	A	G	1.158e^-4	0.981	UPSTREAM tRNA:CR32273 INTRON prominin-like
3R	23995001	3R_23995001_SNP [dm3] 3R_28169279_SNP [dm6]	G	A	1.161e^-4	0.981	INTRON CG34354
2L	6712017	2L_6712017_SNP [dm3] 2L_6712017_SNP [dm6]	G	A	1.166e^-4	0.981	UTR_3_PRIME AkhR INTRON AkhR
X	8557315	X_8557315_SNP [dm3] X_8663282_SNP [dm6]	A	G	1.167e^-4	0.981	INTERGENIC
3L	12354566	3L_12354566_SNP [dm3] 3L_12361466_SNP [dm6]	A	G	1.170e^-4	0.981	INTERGENIC
2L	7437094	2L_7437094_SNP [dm3] 2L_7437094_SNP [dm6]	G	A	1.170e^-4	0.981	UPSTREAM CG5973 INTERGENIC
3L	10683407	3L_10683407_SNP [dm3] 3L_10690307_SNP [dm6]	C	A	1.172e^-4	0.981	UTR_3_PRIME simj UPSTREAM CG11811
X	5092400	X_5092400_DEL [dm3] X_5198367_DEL [dm6]	CGGGAAAATATATAGC...	C	1.179e^-4	0.981	INTRON rg & 1 other
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	1.187e^-4	0.981	INTRON rgn
2L	11093702	2L_11093702_SNP [dm3] 2L_11093702_SNP [dm6]	C	A	1.205e^-4	0.981	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA
3R	24095761	3R_24095761_SNP [dm3] 3R_28270039_SNP [dm6]	T	C	1.213e^-4	0.981	INTERGENIC
X	17076851	X_17076851_DEL [dm3] X_17182818_DEL [dm6]	TACTCAGATAAGT...	T	1.230e^-4	0.981	DOWNSTREAM CR44026 INTRON baz
2L	6026212	2L_6026212_SNP [dm3] 2L_6026212_SNP [dm6]	A	G	1.242e^-4	0.981	INTRON CG9109
X	13349305	X_13349305_SNP [dm3] X_13455272_SNP [dm6]	T	A	1.250e^-4	0.981	INTRON Neto
X	17116406	X_17116406_SNP [dm3] X_17222373_SNP [dm6]	G	T	1.250e^-4	0.981	SYNONYMOUS_CODING CG5172 DOWNSTREAM CG34327 INTRON CG5172
2L	6071285	2L_6071285_SNP [dm3] 2L_6071285_SNP [dm6]	C	T	1.250e^-4	0.981	UPSTREAM CG9154 & 1 other INTRON Kr-h2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	18770602	3R_18770602_SNP [dm3] 3R_22944880_SNP [dm6]	A	T	1.263e^-4	0.981	INTRON klg	TF binding site mE1_TFBS_chinmo
X	10552027	X_10552027_SNP [dm3] X_10657994_SNP [dm6]	G	A	1.264e^-4	0.981	SYNONYMOUS_CODING CG2111 INTRON X11Lbeta	TF binding site mE1_TFBS_HSA
3L	14501918	3L_14501918_SNP [dm3] 3L_14508818_SNP [dm6]	C	T	1.265e^-4	0.981	SYNONYMOUS_CODING bbg
3L	4136314	3L_4136314_SNP [dm3] 3L_4136314_SNP [dm6]	C	T	1.274e^-4	0.981	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3R	26318085	3R_26318085_SNP [dm3] 3R_30492363_SNP [dm6]	A	G	1.279e^-4	0.981	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3L	12086728	3L_12086728_SNP [dm3] 3L_12093628_SNP [dm6]	C	T	1.283e^-4	0.981	INTERGENIC
3L	13504151	3L_13504151_SNP [dm3] 3L_13511051_SNP [dm6]	A	T	1.293e^-4	0.981	UTR_3_PRIME Spt20 DOWNSTREAM Vps36 & 1 other
2L	902061	2L_902061_SNP [dm3] 2L_902061_SNP [dm6]	G	A	1.295e^-4	0.981	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	1.302e^-4	0.981	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	1.302e^-4	0.981	INTRON CG7120
3L	972610	3L_972610_SNP [dm3] 3L_972610_SNP [dm6]	G	C	1.306e^-4	0.981	INTRON Glut1
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	1.307e^-4	0.981	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20267118	2L_20267118_SNP [dm3] 2L_20267118_SNP [dm6]	C	T	1.332e^-4	0.981	INTERGENIC
3L	3037761	3L_3037761_SNP [dm3] 3L_3037761_SNP [dm6]	C	T	1.346e^-4	0.981	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	712423	3L_712423_SNP [dm3] 3L_712423_SNP [dm6]	G	C	1.353e^-4	0.981	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11828827	2R_11828827_SNP [dm3] 2R_15941322_SNP [dm6]	G	A	1.371e^-4	0.981	SYNONYMOUS_CODING CG8299	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	1.390e^-4	0.981	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	1.393e^-4	0.981	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	1.397e^-4	0.981	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.401e^-4	0.981	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10264888	3L_10264888_SNP [dm3] 3L_10271788_SNP [dm6]	C	A	1.404e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7494934	3R_7494934_SNP [dm3] 3R_11669212_SNP [dm6]	G	A	1.415e^-4	0.981	SYNONYMOUS_CODING CG42327	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	1.422e^-4	0.981	UPSTREAM Cpr62Bc INTERGENIC
3L	14469426	3L_14469426_SNP [dm3] 3L_14476326_SNP [dm6]	A	G	1.422e^-4	0.981	INTRON bbg	TF binding site mE1_TFBS_Trl
2R	14452283	2R_14452283_SNP [dm3] 2R_18564778_SNP [dm6]	G	A	1.427e^-4	0.981	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22988189	3R_22988189_SNP [dm3] 3R_27162467_SNP [dm6]	C	T	1.434e^-4	0.981	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	11811508	2L_11811508_DEL [dm3] 2L_11811508_DEL [dm6]	CATCAATAG	T	1.457e^-4	0.981	INTRON CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17737468	2R_17737468_SNP [dm3] 2R_21849963_SNP [dm6]	A	G	1.465e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	7507086	2R_7507086_DEL [dm3] 2R_11619581_DEL [dm6]	TT	T	1.465e^-4	0.981	UTR_3_PRIME CG9005 UPSTREAM Egm DOWNSTREAM CG9005	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	5092394	X_5092394_SNP [dm3] X_5198361_SNP [dm6]	G	A	1.468e^-4	0.981	INTRON rg & 1 other
2L	15020334	2L_15020334_SNP [dm3] 2L_15020334_SNP [dm6]	C	T	1.469e^-4	0.981	INTRON GABA-B-R1
3L	18818952	3L_18818952_SNP [dm3] 3L_18825852_SNP [dm6]	G	A	1.480e^-4	0.981	INTRON Cat
2R	17358757	2R_17358757_SNP [dm3] 2R_21471252_SNP [dm6]	A	G	1.480e^-4	0.981	INTRON Sdc
X	6451850	X_6451850_SNP [dm3] X_6557817_SNP [dm6]	C	T	1.485e^-4	0.981	SYNONYMOUS_CODING CG34417 INTRON CG34417
3L	7568262	3L_7568262_SNP [dm3] 3L_7575162_SNP [dm6]	C	A	1.487e^-4	0.981	INTERGENIC
2R	15597150	2R_15597150_SNP [dm3] 2R_19709645_SNP [dm6]	C	T	1.491e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
2L	2872907	2L_2872907_SNP [dm3] 2L_2872907_SNP [dm6]	C	T	1.493e^-4	0.981	INTRON CG31694	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	7181683	X_7181683_SNP [dm3] X_7287650_SNP [dm6]	C	T	1.493e^-4	0.981	DOWNSTREAM unc-119 INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens mE1_TFBS_Ubx
X	3532686	X_3532686_DEL [dm3] X_3638653_DEL [dm6]	TTGTTT	T	1.527e^-4	0.981	INTRON AstA-R1
3L	14511671	3L_14511671_SNP [dm3] 3L_14518571_SNP [dm6]	A	T	1.530e^-4	0.981	DOWNSTREAM CG9592 INTRON bbg
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	1.533e^-4	0.981	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	1.540e^-4	0.981	INTRON spir & 1 other
X	9607935	X_9607935_SNP [dm3] X_9713902_SNP [dm6]	A	G	1.560e^-4	0.981	INTERGENIC
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	1.561e^-4	0.981	INTERGENIC
2L	6706251	2L_6706251_SNP [dm3] 2L_6706251_SNP [dm6]	C	T	1.563e^-4	0.981	INTRON Tsp
3R	22526439	3R_22526439_SNP [dm3] 3R_26700717_SNP [dm6]	G	T	1.564e^-4	0.981	SYNONYMOUS_CODING amon
2L	8116827	2L_8116827_SNP [dm3] 2L_8116827_SNP [dm6]	T	C	1.592e^-4	0.981	DOWNSTREAM mon2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	12882383	X_12882383_SNP [dm3] X_12988350_SNP [dm6]	G	A	1.606e^-4	0.981	UPSTREAM rad INTERGENIC
3L	12371920	3L_12371920_SNP [dm3] 3L_12378820_SNP [dm6]	A	T	1.609e^-4	0.981	INTRON Ncc69
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	1.625e^-4	0.981	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	1.627e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7215614	2L_7215614_SNP [dm3] 2L_7215614_SNP [dm6]	T	C	1.632e^-4	0.981	INTRON CG13784
2L	11811447	2L_11811447_SNP [dm3] 2L_11811447_SNP [dm6]	T	C	1.636e^-4	0.981	SYNONYMOUS_CODING CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14143083	3L_14143083_SNP [dm3] 3L_14149983_SNP [dm6]	T	C	1.651e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.662e^-4	0.981	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3R	8587669	3R_8587669_SNP [dm3] 3R_12761947_SNP [dm6]	G	C	1.662e^-4	0.981	INTRON beat-Vc
X	17163331	X_17163331_SNP [dm3] X_17269298_SNP [dm6]	A	G	1.664e^-4	0.981	INTRON f
2L	7447943	2L_7447943_SNP [dm3] 2L_7447943_SNP [dm6]	A	C	1.665e^-4	0.981	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
2R	10864084	2R_10864084_SNP [dm3] 2R_14976579_SNP [dm6]	A	G	1.674e^-4	0.981	INTRON ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13084401	2R_13084401_SNP [dm3] 2R_17196896_SNP [dm6]	C	A	1.683e^-4	0.981	SYNONYMOUS_CODING CG10950
3R	27458936	3R_27458936_SNP [dm3] 3R_31633214_SNP [dm6]	C	T	1.686e^-4	0.981	INTRON kek6
2L	4698035	2L_4698035_SNP [dm3] 2L_4698035_SNP [dm6]	C	G	1.691e^-4	0.981	INTRON CG34351
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	1.691e^-4	0.981	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6004105	3R_6004105_INS [dm3] 3R_10178383_INS [dm6]	A	ATTA	1.707e^-4	0.981	INTRON CG12814
3L	3008320	3L_3008320_SNP [dm3] 3L_3008320_SNP [dm6]	C	A	1.715e^-4	0.981	INTRON FMRFaR
2R	9458858	2R_9458858_SNP [dm3] 2R_13571353_SNP [dm6]	T	C	1.721e^-4	0.981	UTR_3_PRIME CG42807 DOWNSTREAM CG42807	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Stat92E
3R	8418777	3R_8418777_SNP [dm3] 3R_12593055_SNP [dm6]	T	C	1.722e^-4	0.981	INTRON Octbeta2R
X	3535629	X_3535629_SNP [dm3] X_3641596_SNP [dm6]	A	G	1.723e^-4	0.981	INTRON AstA-R1
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	1.727e^-4	0.981	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.735e^-4	0.981	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	1.752e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
3R	3783969	3R_3783969_SNP [dm3] 3R_7958247_SNP [dm6]	T	C	1.763e^-4	0.981	INTRON dsx
3R	19230108	3R_19230108_SNP [dm3] 3R_23404386_SNP [dm6]	T	G	1.766e^-4	0.981	SYNONYMOUS_CODING Ir94d UPSTREAM CG17380	TF binding site mE1_TFBS_sens
2L	14248353	2L_14248353_SNP [dm3] 2L_14248353_SNP [dm6]	T	C	1.783e^-4	0.981	INTERGENIC
2R	10535958	2R_10535958_SNP [dm3] 2R_14648453_SNP [dm6]	T	A	1.786e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10553349	X_10553349_SNP [dm3] X_10659316_SNP [dm6]	T	C	1.788e^-4	0.981	SYNONYMOUS_CODING CG2111 INTRON X11Lbeta	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17962080	2R_17962080_SNP [dm3] 2R_22074575_SNP [dm6]	T	C	1.791e^-4	0.981	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13486695	3L_13486695_SNP [dm3] 3L_13493595_SNP [dm6]	C	T	1.793e^-4	0.981	INTRON Tgi
2R	16436497	2R_16436497_SNP [dm3] 2R_20548992_SNP [dm6]	G	A	1.795e^-4	0.981	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
2R	17027225	2R_17027225_SNP [dm3] 2R_21139720_SNP [dm6]	A	G	1.798e^-4	0.981	UTR_5_PRIME Magi INTRON Magi
3R	17670394	3R_17670394_SNP [dm3] 3R_21844672_SNP [dm6]	A	G	1.805e^-4	0.981	SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
3L	10445277	3L_10445277_SNP [dm3] 3L_10452177_SNP [dm6]	A	C	1.805e^-4	0.981	INTERGENIC
2R	11479534	2R_11479534_SNP [dm3] 2R_15592029_SNP [dm6]	T	C	1.805e^-4	0.981	INTERGENIC
3L	17117154	3L_17117154_SNP [dm3] 3L_17124054_SNP [dm6]	C	T	1.811e^-4	0.981	INTRON Rbp6	TF binding site BDTNP1_TFBS_da
X	20453085	X_20453085_SNP [dm3] X_20582058_SNP [dm6]	G	T	1.811e^-4	0.981	INTERGENIC
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	1.812e^-4	0.981	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	1.825e^-4	0.981	DOWNSTREAM CG3982 INTRON CG3967
3R	20445199	3R_20445199_SNP [dm3] 3R_24619477_SNP [dm6]	C	G	1.834e^-4	0.981	NON_SYNONYMOUS_CODING mld	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3864036	2L_3864036_SNP [dm3] 2L_3864036_SNP [dm6]	C	T	1.853e^-4	0.981	SYNONYMOUS_CODING CG3964	TF binding site BDTNP1_TFBS_sna
3L	6110307	3L_6110307_SNP [dm3] 3L_6117207_SNP [dm6]	T	G	1.872e^-4	0.981	INTRON Ets65A
3L	14469124	3L_14469124_SNP [dm3] 3L_14476024_SNP [dm6]	A	G	1.877e^-4	0.981	INTRON bbg
X	17273364	X_17273364_SNP [dm3] X_17379331_SNP [dm6]	G	A	1.884e^-4	0.981	UPSTREAM CR43491 INTERGENIC
3L	13291952	3L_13291952_SNP [dm3] 3L_13298852_SNP [dm6]	G	T	1.885e^-4	0.981	UTR_3_PRIME CG42481 UPSTREAM CR45255 DOWNSTREAM CR45254 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	18520226	2R_18520226_SNP [dm3] 2R_22632721_SNP [dm6]	A	G	1.890e^-4	0.981	UTR_3_PRIME CG33143	TF binding site mE1_TFBS_cad
3L	9210575	3L_9210575_SNP [dm3] 3L_9217475_SNP [dm6]	T	C	1.895e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10936643	3R_10936643_SNP [dm3] 3R_15110921_SNP [dm6]	T	C	1.899e^-4	0.981	INTRON CG42788
3R	21128988	3R_21128988_SNP [dm3] 3R_25303266_SNP [dm6]	A	C	1.912e^-4	0.981	NON_SYNONYMOUS_CODING CG31370 UPSTREAM CG31436 DOWNSTREAM CG13659
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	1.929e^-4	0.981	INTRON kirre
2L	16392547	2L_16392547_SNP [dm3] 2L_16392547_SNP [dm6]	A	T	1.930e^-4	0.981	INTERGENIC
3L	3037956	3L_3037956_SNP [dm3] 3L_3037956_SNP [dm6]	A	G	1.934e^-4	0.981	SYNONYMOUS_CODING CG2162 UPSTREAM CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	14511725	3L_14511725_SNP [dm3] 3L_14518625_SNP [dm6]	T	C	1.936e^-4	0.981	DOWNSTREAM CG9592 INTRON bbg
3L	1068615	3L_1068615_SNP [dm3] 3L_1068615_SNP [dm6]	A	C	1.943e^-4	0.981	INTRON bab1
3L	14457876	3L_14457876_SNP [dm3] 3L_14464776_SNP [dm6]	A	C	1.943e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10531800	2R_10531800_SNP [dm3] 2R_14644295_SNP [dm6]	C	T	1.944e^-4	0.981	UPSTREAM CG10139 INTERGENIC
3R	10937667	3R_10937667_SNP [dm3] 3R_15111945_SNP [dm6]	C	G	1.954e^-4	0.981	NON_SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17074234	X_17074234_SNP [dm3] X_17180201_SNP [dm6]	T	G	1.964e^-4	0.981	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	4836717	X_4836717_SNP [dm3] X_4942684_SNP [dm6]	T	C	1.974e^-4	0.981	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da
3L	10445394	3L_10445394_SNP [dm3] 3L_10452294_SNP [dm6]	G	A	1.978e^-4	0.981	INTERGENIC
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	1.982e^-4	0.981	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3714905	3L_3714905_SNP [dm3] 3L_3714905_SNP [dm6]	C	T	1.983e^-4	0.981	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
X	3601739	X_3601739_SNP [dm3] X_3707706_SNP [dm6]	G	T	1.984e^-4	0.981	INTRON Rala
3L	6522164	3L_6522164_SNP [dm3] 3L_6529064_SNP [dm6]	C	T	2.007e^-4	0.981	INTRON sfl
2L	5556044	2L_5556044_SNP [dm3] 2L_5556044_SNP [dm6]	A	G	2.018e^-4	0.981	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2L	19846339	2L_19846339_SNP [dm3] 2L_19846339_SNP [dm6]	T	A	2.018e^-4	0.981	INTRON sick	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	16191910	3R_16191910_DEL [dm3] 3R_20366188_DEL [dm6]	TCAGT	T	2.029e^-4	0.981	INTERGENIC
3R	17753089	3R_17753089_SNP [dm3] 3R_21927367_SNP [dm6]	G	C	2.034e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	17671085	3R_17671085_SNP [dm3] 3R_21845363_SNP [dm6]	T	G	2.050e^-4	0.981	UPSTREAM CR44087 & 1 other DOWNSTREAM Gr93d INTERGENIC
2L	8700476	2L_8700476_SNP [dm3] 2L_8700476_SNP [dm6]	C	T	2.051e^-4	0.981	UPSTREAM Hnf4 INTRON Hnf4
3L	15642347	3L_15642347_SNP [dm3] 3L_15649247_SNP [dm6]	T	C	2.054e^-4	0.981	NON_SYNONYMOUS_CODING Eig71Ea UPSTREAM Eig71Eb DOWNSTREAM CG43083
2R	17424293	2R_17424293_SNP [dm3] 2R_21536788_SNP [dm6]	G	A	2.056e^-4	0.981	START_GAINED CG30286 UTR_5_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3854071	2L_3854071_SNP [dm3] 2L_3854071_SNP [dm6]	C	T	2.056e^-4	0.981	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17274596	X_17274596_SNP [dm3] X_17380563_SNP [dm6]	G	A	2.064e^-4	0.981	INTERGENIC
3R	11409169	3R_11409169_SNP [dm3] 3R_15583447_SNP [dm6]	C	T	2.072e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16473673	2R_16473673_SNP [dm3] 2R_20586168_SNP [dm6]	T	A	2.075e^-4	0.981	UPSTREAM mir-991 & 1 other DOWNSTREAM Nnf1a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12908612	3L_12908612_SNP [dm3] 3L_12915512_SNP [dm6]	T	A	2.076e^-4	0.981	INTERGENIC
2L	5556063	2L_5556063_SNP [dm3] 2L_5556063_SNP [dm6]	G	T	2.086e^-4	0.981	DOWNSTREAM CG14017 INTRON GluRIIA
3L	5717656	3L_5717656_SNP [dm3] 3L_5724556_SNP [dm6]	T	C	2.094e^-4	0.981	INTRON sif
3R	19231494	3R_19231494_SNP [dm3] 3R_23405772_SNP [dm6]	T	A	2.099e^-4	0.981	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	2.120e^-4	0.981	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	8017115	2R_8017115_SNP [dm3] 2R_12129610_SNP [dm6]	T	C	2.131e^-4	0.981	INTERGENIC
2R	1704255	2R_1704255_SNP [dm3] 2R_5816750_SNP [dm6]	G	A	2.132e^-4	0.981	INTRON dpr12
3L	21553919	3L_21553919_SNP [dm3] 3L_21560819_SNP [dm6]	T	C	2.140e^-4	0.981	INTRON CapaR	TF binding site mE1_TFBS_sens
2L	3372585	2L_3372585_SNP [dm3] 2L_3372585_SNP [dm6]	T	A	2.145e^-4	0.981	DOWNSTREAM CG15412 INTRON CG34394	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3L	3008329	3L_3008329_SNP [dm3] 3L_3008329_SNP [dm6]	A	G	2.150e^-4	0.981	INTRON FMRFaR
3L	3037414	3L_3037414_SNP [dm3] 3L_3037414_SNP [dm6]	A	G	2.152e^-4	0.981	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3750613	3L_3750613_SNP [dm3] 3L_3750613_SNP [dm6]	T	C	2.152e^-4	0.981	INTRON CG32264
X	10905591	X_10905591_SNP [dm3] X_11011558_SNP [dm6]	C	G	2.152e^-4	0.981	INTRON CG42339	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	14405595	3L_14405595_SNP [dm3] 3L_14412495_SNP [dm6]	C	A	2.169e^-4	0.981	SYNONYMOUS_CODING CG3919 DOWNSTREAM bbg
3L	5691071	3L_5691071_SNP [dm3] 3L_5697971_SNP [dm6]	T	C	2.174e^-4	0.981	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3224940	X_3224940_INS [dm3] X_3330907_INS [dm6]	A	AGACAGGCGAGACGAGCGA...	2.176e^-4	0.981	INTRON CR44886 & 1 other
2R	18027463	2R_18027463_DEL [dm3] 2R_22139958_DEL [dm6]	CGTAT	A	2.177e^-4	0.981	UTR_5_PRIME gom DOWNSTREAM CG11269 INTRON a
2R	17943946	2R_17943946_SNP [dm3] 2R_22056441_SNP [dm6]	A	G	2.179e^-4	0.981	DOWNSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
X	17101437	X_17101437_SNP [dm3] X_17207404_SNP [dm6]	T	C	2.188e^-4	0.981	SYNONYMOUS_CODING CG32564	TF binding site mE1_TFBS_chinmo
2R	16301581	2R_16301581_SNP [dm3] 2R_20414076_SNP [dm6]	G	T	2.190e^-4	0.981	INTERGENIC
3L	18095220	3L_18095220_DEL [dm3] 3L_18102120_DEL [dm6]	AA	A	2.209e^-4	0.981	INTRON CG13698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	14511686	3L_14511686_SNP [dm3] 3L_14518586_SNP [dm6]	C	T	2.212e^-4	0.981	DOWNSTREAM CG9592 INTRON bbg
3L	14511687	3L_14511687_SNP [dm3] 3L_14518587_SNP [dm6]	C	A	2.212e^-4	0.981	DOWNSTREAM CG9592 INTRON bbg
X	12795274	X_12795274_SNP [dm3] X_12901241_SNP [dm6]	C	T	2.213e^-4	0.981	UPSTREAM CG32649 DOWNSTREAM CG4407 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	10905465	X_10905465_SNP [dm3] X_11011432_SNP [dm6]	T	C	2.213e^-4	0.981	INTRON CG42339	TF binding site mE1_TFBS_HSA
3L	3006414	3L_3006414_SNP [dm3] 3L_3006414_SNP [dm6]	A	G	2.219e^-4	0.981	INTRON FMRFaR
3R	26318092	3R_26318092_SNP [dm3] 3R_30492370_SNP [dm6]	A	T	2.221e^-4	0.981	DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
2R	9812949	2R_9812949_SNP [dm3] 2R_13925444_SNP [dm6]	G	T	2.228e^-4	0.981	UTR_5_PRIME shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5336601	X_5336601_SNP [dm3] X_5442568_SNP [dm6]	A	T	2.230e^-4	0.981	INTERGENIC
2L	9817143	2L_9817143_SNP [dm3] 2L_9817143_SNP [dm6]	C	T	2.245e^-4	0.981	INTRON nAChRalpha6
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	2.252e^-4	0.981	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	2.255e^-4	0.981	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	2.265e^-4	0.981	INTRON rgn
2L	4276713	2L_4276713_SNP [dm3] 2L_4276713_SNP [dm6]	T	G	2.277e^-4	0.981	DOWNSTREAM Art2 INTERGENIC
2L	1411266	2L_1411266_INS [dm3] 2L_1411266_INS [dm6]	T	TT	2.284e^-4	0.981	INTRON lea	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	25319994	3R_25319994_SNP [dm3] 3R_29494272_SNP [dm6]	A	C	2.285e^-4	0.981	UPSTREAM CG2310 & 1 other DOWNSTREAM Diedel INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8066765	2L_8066765_SNP [dm3] 2L_8066765_SNP [dm6]	A	G	2.288e^-4	0.981	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	2.298e^-4	0.981	INTRON nAChRalpha6
3R	17757583	3R_17757583_SNP [dm3] 3R_21931861_SNP [dm6]	C	T	2.299e^-4	0.981	INTERGENIC
2R	13804692	2R_13804692_SNP [dm3] 2R_17917187_SNP [dm6]	T	G	2.311e^-4	0.981	INTRON Elk
3R	21146864	3R_21146864_SNP [dm3] 3R_25321142_SNP [dm6]	G	A	2.318e^-4	0.981	UTR_3_PRIME CG10562
2L	10070238	2L_10070238_SNP [dm3] 2L_10070238_SNP [dm6]	A	G	2.335e^-4	0.981	INTRON CG44153
2L	2162500	2L_2162500_SNP [dm3] 2L_2162500_SNP [dm6]	A	T	2.345e^-4	0.981	UPSTREAM aop INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	4989347	3L_4989347_SNP [dm3] 3L_4989347_SNP [dm6]	T	G	2.352e^-4	0.981	INTRON Con
3R	17670451	3R_17670451_SNP [dm3] 3R_21844729_SNP [dm6]	T	G	2.369e^-4	0.981	NON_SYNONYMOUS_CODING Gr93c UPSTREAM Gr93b & 1 other DOWNSTREAM Gr93d
3R	10304470	3R_10304470_SNP [dm3] 3R_14478748_SNP [dm6]	G	T	2.369e^-4	0.981	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	2.373e^-4	0.981	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3L	6694446	3L_6694446_SNP [dm3] 3L_6701346_SNP [dm6]	T	C	2.383e^-4	0.981	INTRON SP1173
2R	17027228	2R_17027228_SNP [dm3] 2R_21139723_SNP [dm6]	G	A	2.394e^-4	0.981	UTR_5_PRIME Magi INTRON Magi
3R	19392014	3R_19392014_SNP [dm3] 3R_23566292_SNP [dm6]	G	A	2.415e^-4	0.981	INTRON beat-IV
X	17074394	X_17074394_SNP [dm3] X_17180361_SNP [dm6]	G	A	2.427e^-4	0.981	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	2.436e^-4	0.981	UTR_3_PRIME hec DOWNSTREAM fne
2R	3892837	2R_3892837_SNP [dm3] 2R_8005332_SNP [dm6]	G	T	2.440e^-4	0.981	INTRON Odc1	TF binding site mE1_TFBS_chinmo
2L	15391101	2L_15391101_SNP [dm3] 2L_15391101_SNP [dm6]	G	A	2.443e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1241812	2L_1241812_SNP [dm3] 2L_1241812_SNP [dm6]	C	A	2.447e^-4	0.981	SYNONYMOUS_CODING CG5397
X	17273347	X_17273347_INS [dm3] X_17379314_INS [dm6]	G	GG	2.448e^-4	0.981	UPSTREAM CR43491 INTERGENIC
2R	17943889	2R_17943889_SNP [dm3] 2R_22056384_SNP [dm6]	C	G	2.455e^-4	0.981	DOWNSTREAM CG13500 INTERGENIC
3R	3789415	3R_3789415_SNP [dm3] 3R_7963693_SNP [dm6]	A	G	2.466e^-4	0.981	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	18353698	3L_18353698_SNP [dm3] 3L_18360598_SNP [dm6]	G	C	2.480e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13259551	3L_13259551_SNP [dm3] 3L_13266451_SNP [dm6]	A	G	2.481e^-4	0.981	INTRON caps
3R	9857151	3R_9857151_SNP [dm3] 3R_14031429_SNP [dm6]	C	T	2.488e^-4	0.981	UTR_3_PRIME Cyp6d5 UPSTREAM CG3061 INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14763152	3L_14763152_SNP [dm3] 3L_14770052_SNP [dm6]	A	G	2.490e^-4	0.981	SYNONYMOUS_CODING mop UPSTREAM CG17173
3R	11307027	3R_11307027_SNP [dm3] 3R_15481305_SNP [dm6]	G	A	2.491e^-4	0.981	UPSTREAM CG14870 INTERGENIC
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	2.498e^-4	0.981	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	6706285	2L_6706285_DEL [dm3] 2L_6706285_DEL [dm6]	GGTGTTT	G	2.499e^-4	0.981	INTRON Tsp
3L	3007581	3L_3007581_SNP [dm3] 3L_3007581_SNP [dm6]	A	G	2.503e^-4	0.981	INTRON FMRFaR
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	2.506e^-4	0.981	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3L	3008225	3L_3008225_SNP [dm3] 3L_3008225_SNP [dm6]	G	A	2.514e^-4	0.981	INTRON FMRFaR
2L	9910074	2L_9910074_SNP [dm3] 2L_9910074_SNP [dm6]	C	T	2.531e^-4	0.981	SYNONYMOUS_CODING Etl1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22988411	3R_22988411_SNP [dm3] 3R_27162689_SNP [dm6]	C	A	2.543e^-4	0.981	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
3L	9079156	3L_9079156_SNP [dm3] 3L_9086056_SNP [dm6]	C	A	2.552e^-4	0.981	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3R	27231355	3R_27231355_SNP [dm3] 3R_31405633_SNP [dm6]	A	C	2.562e^-4	0.981	UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9945302	2L_9945302_DEL [dm3] 2L_9945302_DEL [dm6]	AA	A	2.566e^-4	0.981	INTRON CG5853	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14294344	3L_14294344_SNP [dm3] 3L_14301244_SNP [dm6]	T	A	2.567e^-4	0.981	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5306212	3R_5306212_SNP [dm3] 3R_9480490_SNP [dm6]	G	A	2.577e^-4	0.981	INTRON CG16779	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8527107	3R_8527107_SNP [dm3] 3R_12701385_SNP [dm6]	T	C	2.580e^-4	0.981	INTRON Past1
2L	2841738	2L_2841738_SNP [dm3] 2L_2841738_SNP [dm6]	T	C	2.581e^-4	0.981	DOWNSTREAM CG18558 INTRON CG2975
2L	18950671	2L_18950671_SNP [dm3] 2L_18950671_SNP [dm6]	C	A	2.612e^-4	0.981	NON_SYNONYMOUS_CODING CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_sens
3L	16871431	3L_16871431_SNP [dm3] 3L_16878331_SNP [dm6]	T	G	2.616e^-4	0.981	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_HSA
3L	4136331	3L_4136331_SNP [dm3] 3L_4136331_SNP [dm6]	A	T	2.618e^-4	0.981	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	2.621e^-4	0.981	INTERGENIC
2L	18780111	2L_18780111_SNP [dm3] 2L_18780111_SNP [dm6]	G	A	2.626e^-4	0.981	UTR_5_PRIME ham	TF binding site BDTNP1_TFBS_twi
3R	21387393	3R_21387393_SNP [dm3] 3R_25561671_SNP [dm6]	C	G	2.639e^-4	0.981	INTRON msi
3L	7929973	3L_7929973_SNP [dm3] 3L_7936873_SNP [dm6]	A	G	2.642e^-4	0.981	UTR_3_PRIME Srp9 UPSTREAM syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5380240	2L_5380240_SNP [dm3] 2L_5380240_SNP [dm6]	G	A	2.672e^-4	0.981	EXON CR42850	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	2.685e^-4	0.981	INTERGENIC
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	2.688e^-4	0.981	UTR_3_PRIME hec DOWNSTREAM fne
X	3532696	X_3532696_SNP [dm3] X_3638663_SNP [dm6]	T	C	2.689e^-4	0.981	INTRON AstA-R1
3L	17699660	3L_17699660_DEL [dm3] 3L_17706560_DEL [dm6]	CGTC	C	2.709e^-4	0.981	INTRON Ccn
3R	1549813	3R_1549813_SNP [dm3] 3R_5724091_SNP [dm6]	C	T	2.715e^-4	0.981	EXON CR44924	TF binding site BDTNP1_TFBS_gt
X	12854640	X_12854640_SNP [dm3] X_12960607_SNP [dm6]	C	A	2.726e^-4	0.981	UTR_3_PRIME CG32642
2R	17943867	2R_17943867_SNP [dm3] 2R_22056362_SNP [dm6]	G	T	2.741e^-4	0.981	DOWNSTREAM CG13500 INTERGENIC
X	2932761	X_2932761_SNP [dm3] X_3038728_SNP [dm6]	T	A	2.741e^-4	0.981	INTRON kirre
2L	7134740	2L_7134740_SNP [dm3] 2L_7134740_SNP [dm6]	C	T	2.759e^-4	0.981	UPSTREAM Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5154991	2L_5154991_SNP [dm3] 2L_5154991_SNP [dm6]	A	C	2.770e^-4	0.981	NON_SYNONYMOUS_CODING Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	27490638	3R_27490638_SNP [dm3] 3R_31664916_SNP [dm6]	G	A	2.777e^-4	0.981	DOWNSTREAM kek6 INTERGENIC
2R	12252192	2R_12252192_SNP [dm3] 2R_16364687_SNP [dm6]	G	A	2.795e^-4	0.981	UTR_5_PRIME CG15711 UPSTREAM CG15711
2L	16368639	2L_16368639_SNP [dm3] 2L_16368639_SNP [dm6]	G	A	2.804e^-4	0.981	INTERGENIC
3R	17757825	3R_17757825_SNP [dm3] 3R_21932103_SNP [dm6]	C	T	2.804e^-4	0.981	INTERGENIC
3R	17757839	3R_17757839_SNP [dm3] 3R_21932117_SNP [dm6]	G	T	2.810e^-4	0.981	INTERGENIC
2L	13671256	2L_13671256_SNP [dm3] 2L_13671256_SNP [dm6]	T	G	2.820e^-4	0.981	DOWNSTREAM CG18507 INTRON CG18507
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	2.823e^-4	0.981	SYNONYMOUS_CODING CG31321
2L	10391180	2L_10391180_SNP [dm3] 2L_10391180_SNP [dm6]	C	T	2.835e^-4	0.981	SYNONYMOUS_CODING da	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16874395	3L_16874395_SNP [dm3] 3L_16881295_SNP [dm6]	A	T	2.850e^-4	0.981	INTRON Lmpt
2L	21233963	2L_21233963_SNP [dm3] 2L_21233963_SNP [dm6]	G	T	2.859e^-4	0.981	UPSTREAM CG31626 INTRON CG31626 EXON CR45713
3L	14501935	3L_14501935_SNP [dm3] 3L_14508835_SNP [dm6]	C	T	2.863e^-4	0.981	NON_SYNONYMOUS_CODING bbg
X	17956023	X_17956023_SNP [dm3] X_18061990_SNP [dm6]	T	C	2.872e^-4	0.981	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	5091444	X_5091444_SNP [dm3] X_5197411_SNP [dm6]	T	C	2.890e^-4	0.981	INTRON rg & 1 other
3L	5172756	3L_5172756_SNP [dm3] 3L_5179656_SNP [dm6]	G	A	2.892e^-4	0.981	INTRON shep
3L	20573529	3L_20573529_SNP [dm3] 3L_20580429_SNP [dm6]	C	A	2.896e^-4	0.981	INTERGENIC
X	11940832	X_11940832_SNP [dm3] X_12046799_SNP [dm6]	C	T	2.897e^-4	0.981	INTRON CR43960 & 1 other
2R	9811996	2R_9811996_SNP [dm3] 2R_13924491_SNP [dm6]	T	C	2.915e^-4	0.981	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12049488	2R_12049488_SNP [dm3] 2R_16161983_SNP [dm6]	A	C	2.920e^-4	0.981	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17265226	X_17265226_INS [dm3] X_17371193_INS [dm6]	A	AA	2.934e^-4	0.981	INTERGENIC
2R	17943899	2R_17943899_SNP [dm3] 2R_22056394_SNP [dm6]	C	A	2.935e^-4	0.981	DOWNSTREAM CG13500 INTERGENIC
3L	13486704	3L_13486704_SNP [dm3] 3L_13493604_SNP [dm6]	A	T	2.944e^-4	0.981	INTRON Tgi
X	6245696	X_6245696_SNP [dm3] X_6351663_SNP [dm6]	G	A	2.945e^-4	0.981	UPSTREAM kdn INTRON kdn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20273584	3R_20273584_SNP [dm3] 3R_24447862_SNP [dm6]	G	C	2.974e^-4	0.981	INTRON nAChRalpha1
2L	6706214	2L_6706214_SNP [dm3] 2L_6706214_SNP [dm6]	C	T	2.980e^-4	0.981	INTRON Tsp
3L	7837668	3L_7837668_SNP [dm3] 3L_7844568_SNP [dm6]	T	C	2.984e^-4	0.981	INTRON Pdp1	regulatory region REDfly_CRMs
2R	10540362	2R_10540362_SNP [dm3] 2R_14652857_SNP [dm6]	A	G	2.984e^-4	0.981	INTERGENIC
3R	8527124	3R_8527124_SNP [dm3] 3R_12701402_SNP [dm6]	C	T	2.989e^-4	0.981	INTRON Past1
3L	16240925	3L_16240925_SNP [dm3] 3L_16247825_SNP [dm6]	C	T	3.003e^-4	0.981	INTERGENIC
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	3.021e^-4	0.981	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	9857153	3R_9857153_SNP [dm3] 3R_14031431_SNP [dm6]	T	C	3.023e^-4	0.981	UTR_3_PRIME Cyp6d5 UPSTREAM CG3061 INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	14469145	3L_14469145_SNP [dm3] 3L_14476045_SNP [dm6]	T	A	3.031e^-4	0.981	INTRON bbg
3L	15287574	3L_15287574_SNP [dm3] 3L_15294474_SNP [dm6]	G	T	3.036e^-4	0.981	INTERGENIC
3L	3006780	3L_3006780_SNP [dm3] 3L_3006780_SNP [dm6]	C	T	3.060e^-4	0.981	INTRON FMRFaR
2L	15623446	2L_15623446_SNP [dm3] 2L_15623446_SNP [dm6]	T	A	3.068e^-4	0.981	NON_SYNONYMOUS_CODING Or35a
3L	14154391	3L_14154391_SNP [dm3] 3L_14161291_SNP [dm6]	A	G	3.097e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
3L	7834801	3L_7834801_SNP [dm3] 3L_7841701_SNP [dm6]	G	A	3.099e^-4	0.981	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	14325474	3L_14325474_DEL [dm3] 3L_14332374_DEL [dm6]	CC	C	3.100e^-4	0.981	INTRON fz
3L	18720818	3L_18720818_SNP [dm3] 3L_18727718_SNP [dm6]	C	T	3.101e^-4	0.981	INTERGENIC
3R	17757810	3R_17757810_SNP [dm3] 3R_21932088_SNP [dm6]	A	G	3.135e^-4	0.981	INTERGENIC
2L	20254770	2L_20254770_SNP [dm3] 2L_20254770_SNP [dm6]	A	T	3.140e^-4	0.981	UPSTREAM CR40465 INTERGENIC
3L	18361692	3L_18361692_SNP [dm3] 3L_18368592_SNP [dm6]	T	A	3.141e^-4	0.981	INTERGENIC
3L	6980125	3L_6980125_SNP [dm3] 3L_6987025_SNP [dm6]	G	T	3.141e^-4	0.981	INTERGENIC
3L	7605434	3L_7605434_SNP [dm3] 3L_7612334_SNP [dm6]	A	G	3.141e^-4	0.981	INTRON CG33275
3L	17106305	3L_17106305_SNP [dm3] 3L_17113205_SNP [dm6]	G	T	3.142e^-4	0.981	INTRON Rbp6	TF binding site mE1_TFBS_cad
3L	7820489	3L_7820489_SNP [dm3] 3L_7827389_SNP [dm6]	T	G	3.155e^-4	0.981	INTRON Pdp1
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	3.166e^-4	0.981	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	360189	2R_360189_SNP [dm3] 2R_4472684_SNP [dm6]	G	C	3.170e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	1586113	3R_1586113_SNP [dm3] 3R_5760391_SNP [dm6]	T	C	3.171e^-4	0.981	DOWNSTREAM CG2082 INTRON CG2082	TF binding site mE1_TFBS_HSA
3R	10594041	3R_10594041_SNP [dm3] 3R_14768319_SNP [dm6]	G	A	3.172e^-4	0.981	INTRON jvl
2L	3864075	2L_3864075_SNP [dm3] 2L_3864075_SNP [dm6]	G	A	3.185e^-4	0.981	SYNONYMOUS_CODING CG3964	TF binding site BDTNP1_TFBS_sna
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	3.201e^-4	0.981	UPSTREAM CG1722 INTRON CG32521
2R	10897264	2R_10897264_SNP [dm3] 2R_15009759_SNP [dm6]	C	T	3.203e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7215593	2L_7215593_SNP [dm3] 2L_7215593_SNP [dm6]	A	T	3.220e^-4	0.981	INTRON CG13784
2L	3553574	2L_3553574_SNP [dm3] 2L_3553574_SNP [dm6]	A	C	3.228e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1068616	3L_1068616_SNP [dm3] 3L_1068616_SNP [dm6]	C	T	3.231e^-4	0.981	INTRON bab1
3L	4235489	3L_4235489_SNP [dm3] 3L_4235489_SNP [dm6]	C	T	3.238e^-4	0.981	INTRON ImpL2
2R	423336	2R_423336_SNP [dm3] 2R_4535831_SNP [dm6]	G	A	3.239e^-4	0.981	INTERGENIC	transposable element FlyBase
2R	20183078	2R_20183078_SNP [dm3] 2R_24295555_SNP [dm6]	A	G	3.240e^-4	0.981	UTR_5_PRIME CG3394 INTRON CG3394	TF binding site mE1_TFBS_chinmo
2L	11811521	2L_11811521_SNP [dm3] 2L_11811521_SNP [dm6]	A	G	3.248e^-4	0.981	INTRON CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7564621	3L_7564621_SNP [dm3] 3L_7571521_SNP [dm6]	A	G	3.250e^-4	0.981	INTERGENIC
2L	1792786	2L_1792786_SNP [dm3] 2L_1792786_SNP [dm6]	G	C	3.258e^-4	0.981	SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2L	20317077	2L_20317077_SNP [dm3] 2L_20317077_SNP [dm6]	A	T	3.258e^-4	0.981	INTRON spir & 1 other
2L	22002879	2L_22002879_INS [dm3] 2L_22002879_INS [dm6]	A	AGTTTCCTTGCCCACTATTA...	3.262e^-4	0.981	INTERGENIC	transposable element FlyBase
X	11152490	X_11152490_SNP [dm3] X_11258457_SNP [dm6]	T	C	3.263e^-4	0.981	INTRON CG44422
3L	12662296	3L_12662296_SNP [dm3] 3L_12669196_SNP [dm6]	C	G	3.264e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11596317	3L_11596317_SNP [dm3] 3L_11603217_SNP [dm6]	T	C	3.281e^-4	0.981	SYNONYMOUS_CODING CG7368	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	18933616	X_18933616_SNP [dm3] X_19039583_SNP [dm6]	G	C	3.293e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	3.299e^-4	0.981	INTRON spg
X	7911129	X_7911129_SNP [dm3] X_8017096_SNP [dm6]	T	G	3.303e^-4	0.981	INTRON Tbh
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	3.304e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3037993	3L_3037993_SNP [dm3] 3L_3037993_SNP [dm6]	T	A	3.312e^-4	0.981	UPSTREAM CG2162 INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	9962352	3R_9962352_SNP [dm3] 3R_14136630_SNP [dm6]	G	A	3.319e^-4	0.981	INTERGENIC
3L	3009007	3L_3009007_SNP [dm3] 3L_3009007_SNP [dm6]	C	T	3.324e^-4	0.981	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17956015	X_17956015_SNP [dm3] X_18061982_SNP [dm6]	C	T	3.333e^-4	0.981	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	9946265	3R_9946265_SNP [dm3] 3R_14120543_SNP [dm6]	C	T	3.342e^-4	0.981	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	3.348e^-4	0.981	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	10977133	3R_10977133_SNP [dm3] 3R_15151411_SNP [dm6]	T	A	3.369e^-4	0.981	UPSTREAM Gyc88E INTRON Gyc88E
3R	1596617	3R_1596617_SNP [dm3] 3R_5770895_SNP [dm6]	A	G	3.388e^-4	0.981	INTRON CG2082
2R	12509148	2R_12509148_SNP [dm3] 2R_16621643_SNP [dm6]	C	A	3.388e^-4	0.981	INTRON CG5065	TF binding site mE1_TFBS_cad
2R	12509167	2R_12509167_SNP [dm3] 2R_16621662_SNP [dm6]	T	C	3.388e^-4	0.981	INTRON CG5065	TF binding site mE1_TFBS_cad
3L	11450301	3L_11450301_SNP [dm3] 3L_11457201_SNP [dm6]	G	T	3.393e^-4	0.981	SYNONYMOUS_CODING CG12289	TF binding site mE1_TFBS_HSA
3L	8045520	3L_8045520_SNP [dm3] 3L_8052420_SNP [dm6]	T	C	3.403e^-4	0.981	UTR_3_PRIME nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1496810	2R_1496810_SNP [dm3] 2R_5609305_SNP [dm6]	A	T	3.412e^-4	0.981	SYNONYMOUS_CODING CG17508
2R	1487909	2R_1487909_SNP [dm3] 2R_5600404_SNP [dm6]	G	A	3.418e^-4	0.981	INTERGENIC
3L	8667700	3L_8667700_SNP [dm3] 3L_8674600_SNP [dm6]	T	A	3.423e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	15287505	3L_15287505_DEL [dm3] 3L_15294405_DEL [dm6]	GGGCAAATGCAGAAATG...	G	3.434e^-4	0.981	INTERGENIC
3L	14469406	3L_14469406_SNP [dm3] 3L_14476306_SNP [dm6]	A	T	3.436e^-4	0.981	INTRON bbg
X	8751072	X_8751072_SNP [dm3] X_8857039_SNP [dm6]	G	A	3.439e^-4	0.981	INTRON CG12075
2L	6706255	2L_6706255_SNP [dm3] 2L_6706255_SNP [dm6]	G	A	3.443e^-4	0.981	INTRON Tsp
3L	3871908	3L_3871908_SNP [dm3] 3L_3871908_SNP [dm6]	A	G	3.446e^-4	0.981	INTERGENIC
2L	20816761	2L_20816761_SNP [dm3] 2L_20816761_SNP [dm6]	C	A	3.448e^-4	0.981	UPSTREAM CG33322 INTRON CheB38b
3R	18933705	3R_18933705_SNP [dm3] 3R_23107983_SNP [dm6]	T	C	3.453e^-4	0.981	INTRON CG13830
3L	14371933	3L_14371933_SNP [dm3] 3L_14378833_SNP [dm6]	A	G	3.453e^-4	0.981	INTERGENIC
3R	12501260	3R_12501260_SNP [dm3] 3R_16675538_SNP [dm6]	A	G	3.464e^-4	0.981	INTRON Ubx
2L	10089317	2L_10089317_SNP [dm3] 2L_10089317_SNP [dm6]	C	T	3.485e^-4	0.981	INTRON CG44153
3L	23075298	3L_23075298_DEL [dm3] 3L_23082198_DEL [dm6]	TTTTA	T	3.486e^-4	0.981	INTERGENIC
3R	17752800	3R_17752800_SNP [dm3] 3R_21927078_SNP [dm6]	C	T	3.487e^-4	0.981	INTERGENIC
3R	21142055	3R_21142055_SNP [dm3] 3R_25316333_SNP [dm6]	T	C	3.500e^-4	0.981	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
3L	6513601	3L_6513601_SNP [dm3] 3L_6520501_SNP [dm6]	C	A	3.509e^-4	0.981	INTRON sfl
3L	7754552	3L_7754552_SNP [dm3] 3L_7761452_SNP [dm6]	A	G	3.514e^-4	0.981	UTR_5_PRIME Hn INTRON Hn
X	13061541	X_13061541_SNP [dm3] X_13167508_SNP [dm6]	C	T	3.514e^-4	0.981	SPLICE_SITE_REGION CG34411 INTRON CG34411
3R	17757845	3R_17757845_DEL [dm3] 3R_21932123_DEL [dm6]	TGTT	T	3.520e^-4	0.981	INTERGENIC
2L	7274674	2L_7274674_SNP [dm3] 2L_7274674_SNP [dm6]	G	C	3.525e^-4	0.981	INTRON Wnt4
3L	14389469	3L_14389469_SNP [dm3] 3L_14396369_SNP [dm6]	C	G	3.528e^-4	0.981	INTERGENIC
2L	11831491	2L_11831491_SNP [dm3] 2L_11831491_SNP [dm6]	T	C	3.532e^-4	0.981	INTRON Pde1c
2R	4459588	2R_4459588_SNP [dm3] 2R_8572083_SNP [dm6]	A	G	3.543e^-4	0.981	UTR_3_PRIME Cyp6a13
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	3.544e^-4	0.981	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	3.544e^-4	0.981	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2R	20205871	2R_20205871_INS [dm3] 2R_24318348_INS [dm6]	C	CACTGCTC	3.547e^-4	0.981	INTERGENIC
X	3532494	X_3532494_SNP [dm3] X_3638461_SNP [dm6]	G	A	3.551e^-4	0.981	INTRON AstA-R1
2R	7044667	2R_7044667_SNP [dm3] 2R_11157162_SNP [dm6]	A	T	3.555e^-4	0.981	INTRON CG13229
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	3.559e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6522163	3L_6522163_SNP [dm3] 3L_6529063_SNP [dm6]	C	G	3.576e^-4	0.981	INTRON sfl
3L	19345200	3L_19345200_DEL [dm3] 3L_19352100_DEL [dm6]	GT	A	3.582e^-4	0.981	INTRON CG32206
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	3.583e^-4	0.981	INTERGENIC
2L	15092021	2L_15092021_SNP [dm3] 2L_15092021_SNP [dm6]	G	A	3.583e^-4	0.981	INTRON CG15270
2L	7749582	2L_7749582_SNP [dm3] 2L_7749582_SNP [dm6]	G	C	3.583e^-4	0.981	INTERGENIC
2R	14035047	2R_14035047_SNP [dm3] 2R_18147542_SNP [dm6]	C	A	3.584e^-4	0.981	UTR_3_PRIME CG17680 DOWNSTREAM CG5742 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	3.585e^-4	0.981	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
2L	12511206	2L_12511206_SNP [dm3] 2L_12511206_SNP [dm6]	G	C	3.590e^-4	0.981	INTRON bun
2L	2689270	2L_2689270_SNP [dm3] 2L_2689270_SNP [dm6]	A	G	3.594e^-4	0.981	INTRON CG31690
3R	22722783	3R_22722783_SNP [dm3] 3R_26897061_SNP [dm6]	A	G	3.607e^-4	0.981	INTRON T48	regulatory region REDfly_CRMs
3R	17669577	3R_17669577_SNP [dm3] 3R_21843855_SNP [dm6]	C	T	3.621e^-4	0.981	UPSTREAM Gr93b DOWNSTREAM Gr93c INTERGENIC
2R	15917060	2R_15917060_SNP [dm3] 2R_20029555_SNP [dm6]	C	T	3.650e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3R	25320215	3R_25320215_SNP [dm3] 3R_29494493_SNP [dm6]	A	G	3.656e^-4	0.981	UPSTREAM CG2310 & 1 other DOWNSTREAM Diedel INTERGENIC
2R	12252151	2R_12252151_SNP [dm3] 2R_16364646_SNP [dm6]	C	T	3.662e^-4	0.981	UTR_5_PRIME CG15711 UPSTREAM CG15711
X	17076670	X_17076670_SNP [dm3] X_17182637_SNP [dm6]	G	C	3.663e^-4	0.981	DOWNSTREAM CR44026 INTRON baz
2L	3128793	2L_3128793_SNP [dm3] 2L_3128793_SNP [dm6]	C	T	3.664e^-4	0.981	NON_SYNONYMOUS_CODING CG15403 INTRON toc
2L	14690894	2L_14690894_SNP [dm3] 2L_14690894_SNP [dm6]	C	G	3.664e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7820531	3L_7820531_SNP [dm3] 3L_7827431_SNP [dm6]	A	T	3.665e^-4	0.981	INTRON Pdp1
3R	25320076	3R_25320076_SNP [dm3] 3R_29494354_SNP [dm6]	C	T	3.665e^-4	0.981	UPSTREAM CG2310 & 1 other DOWNSTREAM Diedel INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	27835515	3R_27835515_SNP [dm3] 3R_32009793_SNP [dm6]	T	A	3.670e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	904194	X_904194_SNP [dm3] X_1010161_SNP [dm6]	G	A	3.679e^-4	0.981	DOWNSTREAM TfIIA-S-2 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	3.682e^-4	0.981	UTR_3_PRIME CG17129
2R	8140868	2R_8140868_SNP [dm3] 2R_12253363_SNP [dm6]	A	G	3.684e^-4	0.981	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12482522	3L_12482522_SNP [dm3] 3L_12489422_SNP [dm6]	C	T	3.685e^-4	0.981	UPSTREAM CR45681 INTRON CG10660
3R	27505141	3R_27505141_SNP [dm3] 3R_31679419_SNP [dm6]	T	G	3.691e^-4	0.981	SYNONYMOUS_CODING CG11550	TF binding site mE1_TFBS_sens
3R	24599479	3R_24599479_SNP [dm3] 3R_28773757_SNP [dm6]	C	A	3.696e^-4	0.981	INTERGENIC
3R	24599482	3R_24599482_DEL [dm3] 3R_28773760_DEL [dm6]	CATATC	A	3.696e^-4	0.981	INTERGENIC
2R	12208820	2R_12208820_SNP [dm3] 2R_16321315_SNP [dm6]	A	T	3.697e^-4	0.981	NON_SYNONYMOUS_CODING CG30096 UPSTREAM CG8060 & 1 other
2L	20144075	2L_20144075_SNP [dm3] 2L_20144075_SNP [dm6]	T	C	3.701e^-4	0.981	INTERGENIC
3L	712348	3L_712348_SNP [dm3] 3L_712348_SNP [dm6]	G	T	3.708e^-4	0.981	UPSTREAM CG13896 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17943868	2R_17943868_SNP [dm3] 2R_22056363_SNP [dm6]	A	G	3.711e^-4	0.981	DOWNSTREAM CG13500 INTERGENIC
3L	15287551	3L_15287551_SNP [dm3] 3L_15294451_SNP [dm6]	T	A	3.712e^-4	0.981	INTERGENIC
3L	11567729	3L_11567729_SNP [dm3] 3L_11574629_SNP [dm6]	G	A	3.713e^-4	0.981	UTR_5_PRIME CG33490 DOWNSTREAM CG33489
3L	2714937	3L_2714937_SNP [dm3] 3L_2714937_SNP [dm6]	G	C	3.719e^-4	0.981	INTERGENIC
2L	19922021	2L_19922021_SNP [dm3] 2L_19922021_SNP [dm6]	G	C	3.725e^-4	0.981	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
3R	14259871	3R_14259871_SNP [dm3] 3R_18434149_SNP [dm6]	A	T	3.726e^-4	0.981	INTRON fru	TF binding site mE1_TFBS_cad
X	11942111	X_11942111_SNP [dm3] X_12048078_SNP [dm6]	T	A	3.732e^-4	0.981	INTRON CR43960 & 1 other
3R	21200083	3R_21200083_SNP [dm3] 3R_25374361_SNP [dm6]	A	G	3.736e^-4	0.981	INTRON Fur1
3L	4539855	3L_4539855_SNP [dm3] 3L_4539855_SNP [dm6]	G	T	3.738e^-4	0.981	NON_SYNONYMOUS_CODING CG32243 DOWNSTREAM CG11353
3R	5898380	3R_5898380_SNP [dm3] 3R_10072658_SNP [dm6]	C	G	3.740e^-4	0.981	INTRON nerfin-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18716091	3L_18716091_SNP [dm3] 3L_18722991_SNP [dm6]	C	T	3.743e^-4	0.981	NON_SYNONYMOUS_CODING CG12477 UPSTREAM CR43985	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	4257690	2R_4257690_SNP [dm3] 2R_8370185_SNP [dm6]	T	C	3.760e^-4	0.981	UPSTREAM CG2127 & 1 other INTRON pdm3
X	19184397	X_19184397_SNP [dm3] X_19290364_SNP [dm6]	A	T	3.766e^-4	0.981	INTRON CG8034
2R	10911788	2R_10911788_SNP [dm3] 2R_15024283_SNP [dm6]	C	A	3.767e^-4	0.981	UPSTREAM CR45256 DOWNSTREAM Obp51a INTRON hbs
3L	21549325	3L_21549325_SNP [dm3] 3L_21556225_SNP [dm6]	C	T	3.768e^-4	0.981	INTRON CG7173	TF binding site mE1_TFBS_chinmo
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	3.770e^-4	0.981	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	2159946	2L_2159946_SNP [dm3] 2L_2159946_SNP [dm6]	A	T	3.772e^-4	0.981	SYNONYMOUS_CODING aop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	3.776e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14536915	3L_14536915_SNP [dm3] 3L_14543815_SNP [dm6]	A	C	3.783e^-4	0.981	INTRON CG9238
3L	13320516	3L_13320516_SNP [dm3] 3L_13327416_SNP [dm6]	C	T	3.789e^-4	0.981	INTERGENIC
3L	8667830	3L_8667830_SNP [dm3] 3L_8674730_SNP [dm6]	T	A	3.794e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	7308018	3L_7308018_SNP [dm3] 3L_7314918_SNP [dm6]	C	T	3.802e^-4	0.981	INTERGENIC
3L	18844566	3L_18844566_SNP [dm3] 3L_18851466_SNP [dm6]	C	T	3.802e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12185064	2L_12185064_SNP [dm3] 2L_12185064_SNP [dm6]	T	A	3.807e^-4	0.981	INTRON aret
2L	15336771	2L_15336771_SNP [dm3] 2L_15336771_SNP [dm6]	G	A	3.809e^-4	0.981	DOWNSTREAM esg INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	1753601	2R_1753601_SNP [dm3] 2R_5866096_SNP [dm6]	G	T	3.811e^-4	0.981	INTERGENIC
2R	928784	2R_928784_SNP [dm3] 2R_5041279_SNP [dm6]	T	A	3.822e^-4	0.981	INTERGENIC
2L	10936148	2L_10936148_SNP [dm3] 2L_10936148_SNP [dm6]	G	C	3.825e^-4	0.981	UPSTREAM CG14072 INTRON dpr2
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	3.826e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	3.836e^-4	0.981	INTRON Spn31A
2L	3883058	2L_3883058_DEL [dm3] 2L_3883058_DEL [dm6]	GAGAAC	A	3.846e^-4	0.981	INTRON capu	TF binding site mE1_TFBS_HSA
3R	11181100	3R_11181100_SNP [dm3] 3R_15355378_SNP [dm6]	G	A	3.848e^-4	0.981	INTRON Atg4b	TF binding site mE1_TFBS_chinmo
3L	10689925	3L_10689925_SNP [dm3] 3L_10696825_SNP [dm6]	A	C	3.852e^-4	0.981	UTR_5_PRIME NijA
3R	20515237	3R_20515237_SNP [dm3] 3R_24689515_SNP [dm6]	C	T	3.853e^-4	0.981	INTRON slo
2R	10535898	2R_10535898_SNP [dm3] 2R_14648393_SNP [dm6]	G	T	3.860e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9946176	3R_9946176_SNP [dm3] 3R_14120454_SNP [dm6]	G	A	3.861e^-4	0.981	SYNONYMOUS_CODING Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3009001	3L_3009001_SNP [dm3] 3L_3009001_SNP [dm6]	C	T	3.865e^-4	0.981	SYNONYMOUS_CODING FMRFaR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17755641	3R_17755641_SNP [dm3] 3R_21929919_SNP [dm6]	T	A	3.870e^-4	0.981	INTERGENIC
3L	8045536	3L_8045536_SNP [dm3] 3L_8052436_SNP [dm6]	A	G	3.888e^-4	0.981	UTR_3_PRIME nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	9560410	2R_9560410_DEL [dm3] 2R_13672905_DEL [dm6]	ACGCAAA	TG	3.890e^-4	0.981	UPSTREAM CR45031 INTRON fas
2R	17945656	2R_17945656_SNP [dm3] 2R_22058151_SNP [dm6]	G	T	3.892e^-4	0.981	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
3R	20273581	3R_20273581_SNP [dm3] 3R_24447859_SNP [dm6]	C	T	3.893e^-4	0.981	INTRON nAChRalpha1
3L	8667691	3L_8667691_SNP [dm3] 3L_8674591_SNP [dm6]	A	G	3.894e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9043147	2L_9043147_SNP [dm3] 2L_9043147_SNP [dm6]	C	A	3.895e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	3.906e^-4	0.981	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	4075985	X_4075985_SNP [dm3] X_4181952_SNP [dm6]	G	A	3.921e^-4	0.981	INTRON Fas2
2L	13851792	2L_13851792_SNP [dm3] 2L_13851792_SNP [dm6]	C	G	3.954e^-4	0.981	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	8091504	X_8091504_SNP [dm3] X_8197471_SNP [dm6]	A	G	3.955e^-4	0.981	INTRON sdt
3R	15211501	3R_15211501_SNP [dm3] 3R_19385779_SNP [dm6]	G	A	3.956e^-4	0.981	UPSTREAM CR34285 INTRON Ino80	TF binding site BDTNP1_TFBS_twi
2L	10071131	2L_10071131_SNP [dm3] 2L_10071131_SNP [dm6]	G	A	3.957e^-4	0.981	INTRON CG44153
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	3.960e^-4	0.981	SYNONYMOUS_CODING CG31321
3L	7801588	3L_7801588_SNP [dm3] 3L_7808488_SNP [dm6]	T	A	3.961e^-4	0.981	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	3.967e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15801238	3R_15801238_SNP [dm3] 3R_19975516_SNP [dm6]	T	C	3.975e^-4	0.981	INTRON Hs6st & 1 other
3R	15801243	3R_15801243_SNP [dm3] 3R_19975521_SNP [dm6]	T	C	3.975e^-4	0.981	INTRON Hs6st & 1 other
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	3.975e^-4	0.981	INTRON CG30463
2R	19425033	2R_19425033_SNP [dm3] 2R_23537510_SNP [dm6]	C	T	3.981e^-4	0.981	SYNONYMOUS_CODING bw	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14613866	2R_14613866_SNP [dm3] 2R_18726361_SNP [dm6]	G	T	3.985e^-4	0.981	INTRON Hs3st-A
X	21449118	X_21449118_SNP [dm3] X_21578091_SNP [dm6]	T	C	3.987e^-4	0.981	INTERGENIC
3R	16977932	3R_16977932_SNP [dm3] 3R_21152210_SNP [dm6]	T	A	3.988e^-4	0.981	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	3.990e^-4	0.981	INTERGENIC
2R	10911786	2R_10911786_SNP [dm3] 2R_15024281_SNP [dm6]	C	T	3.992e^-4	0.981	UPSTREAM CR45256 DOWNSTREAM Obp51a INTRON hbs
2L	9910406	2L_9910406_SNP [dm3] 2L_9910406_SNP [dm6]	A	G	3.995e^-4	0.981	SYNONYMOUS_CODING Etl1
2L	10936089	2L_10936089_SNP [dm3] 2L_10936089_SNP [dm6]	C	T	3.999e^-4	0.981	UPSTREAM CG14072 INTRON dpr2
2L	4647890	2L_4647890_SNP [dm3] 2L_4647890_SNP [dm6]	A	G	4.005e^-4	0.981	UTR_3_PRIME CG43798
3R	19232020	3R_19232020_SNP [dm3] 3R_23406298_SNP [dm6]	T	G	4.006e^-4	0.981	SYNONYMOUS_CODING Ir94e
3L	14507201	3L_14507201_SNP [dm3] 3L_14514101_SNP [dm6]	A	T	4.008e^-4	0.981	INTRON bbg	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_bab1
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	4.009e^-4	0.981	INTRON CG31637
2R	400222	2R_400222_SNP [dm3] 2R_4512717_SNP [dm6]	C	T	4.012e^-4	0.981	INTERGENIC	transposable element FlyBase
X	10546017	X_10546017_SNP [dm3] X_10651984_SNP [dm6]	C	T	4.014e^-4	0.981	INTRON X11Lbeta
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	4.015e^-4	0.981	INTRON CR44833 & 1 other
X	2776564	X_2776564_SNP [dm3] X_2882531_SNP [dm6]	G	T	4.019e^-4	0.981	UTR_3_PRIME CG14418 INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
X	19722043	X_19722043_SNP [dm3] X_19828010_SNP [dm6]	C	G	4.023e^-4	0.981	INTERGENIC
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	4.026e^-4	0.981	INTRON CG34377
X	22056793	X_22056793_SNP [dm3] X_22654957_SNP [dm6]	G	T	4.030e^-4	0.981	INTERGENIC
2L	4276737	2L_4276737_SNP [dm3] 2L_4276737_SNP [dm6]	A	G	4.032e^-4	0.981	DOWNSTREAM Art2 INTERGENIC
3R	11617763	3R_11617763_SNP [dm3] 3R_15792041_SNP [dm6]	T	G	4.034e^-4	0.981	NON_SYNONYMOUS_CODING c_3_G UPSTREAM Acyp2	TF binding site BDTNP1_TFBS_dl
3L	8039453	3L_8039453_SNP [dm3] 3L_8046353_SNP [dm6]	A	G	4.063e^-4	0.981	INTRON nmo
2R	8479010	2R_8479010_SNP [dm3] 2R_12591505_SNP [dm6]	T	C	4.065e^-4	0.981	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	3052477	3L_3052477_SNP [dm3] 3L_3052477_SNP [dm6]	C	T	4.099e^-4	0.981	UPSTREAM CG1271 DOWNSTREAM CG32485 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18155878	3L_18155878_SNP [dm3] 3L_18162778_SNP [dm6]	C	T	4.104e^-4	0.981	UPSTREAM CG13699 INTERGENIC
2L	9906195	2L_9906195_SNP [dm3] 2L_9906195_SNP [dm6]	C	T	4.107e^-4	0.981	UTR_5_PRIME CG13124	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6353	2L_6353_SNP [dm3] 2L_6353_SNP [dm6]	C	T	4.112e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12140678	2L_12140678_SNP [dm3] 2L_12140678_SNP [dm6]	G	A	4.129e^-4	0.981	DOWNSTREAM Gr33a INTERGENIC
X	22048485	X_22048485_SNP [dm3] X_22646649_SNP [dm6]	G	C	4.131e^-4	0.981	INTERGENIC
3L	16134920	3L_16134920_SNP [dm3] 3L_16141820_SNP [dm6]	T	C	4.131e^-4	0.981	NON_SYNONYMOUS_CODING CG5151 UTR_3_PRIME CG32152	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	1489406	2R_1489406_SNP [dm3] 2R_5601901_SNP [dm6]	T	G	4.153e^-4	0.981	INTERGENIC
3R	8438373	3R_8438373_SNP [dm3] 3R_12612651_SNP [dm6]	T	A	4.153e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	10198803	X_10198803_SNP [dm3] X_10304770_SNP [dm6]	A	G	4.157e^-4	0.981	INTRON alpha-Man-I
3L	14325626	3L_14325626_SNP [dm3] 3L_14332526_SNP [dm6]	C	T	4.162e^-4	0.981	INTRON fz
2L	4692765	2L_4692765_SNP [dm3] 2L_4692765_SNP [dm6]	A	G	4.163e^-4	0.981	INTERGENIC
X	2933209	X_2933209_SNP [dm3] X_3039176_SNP [dm6]	G	A	4.164e^-4	0.981	INTRON kirre
X	3319655	X_3319655_SNP [dm3] X_3425622_SNP [dm6]	G	T	4.172e^-4	0.981	INTRON CR44999 & 1 other
2L	9817564	2L_9817564_SNP [dm3] 2L_9817564_SNP [dm6]	T	A	4.176e^-4	0.981	INTRON nAChRalpha6
3L	14154384	3L_14154384_SNP [dm3] 3L_14161284_SNP [dm6]	A	G	4.189e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs
2R	18665878	2R_18665878_SNP [dm3] 2R_22778373_SNP [dm6]	T	C	4.193e^-4	0.981	INTRON CG42260
3R	23516536	3R_23516536_SNP [dm3] 3R_27690814_SNP [dm6]	A	T	4.194e^-4	0.981	SYNONYMOUS_CODING CG12880	TF binding site mE1_TFBS_chinmo
2L	12511136	2L_12511136_SNP [dm3] 2L_12511136_SNP [dm6]	A	G	4.194e^-4	0.981	INTRON bun
2L	15094996	2L_15094996_SNP [dm3] 2L_15094996_SNP [dm6]	A	G	4.199e^-4	0.981	SYNONYMOUS_CODING CG15270
3L	2530432	3L_2530432_DEL [dm3] 3L_2530432_DEL [dm6]	TTT	T	4.203e^-4	0.981	INTRON Spn
3L	16386381	3L_16386381_SNP [dm3] 3L_16393281_SNP [dm6]	A	T	4.206e^-4	0.981	INTRON CG44836	TF binding site mE1_TFBS_HSA
3R	21845174	3R_21845174_DEL [dm3] 3R_26019452_DEL [dm6]	GACTTAATGTA...	T	4.209e^-4	0.981	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	7312288	3L_7312288_SNP [dm3] 3L_7319188_SNP [dm6]	C	T	4.228e^-4	0.981	UPSTREAM CG8607 INTERGENIC
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	4.234e^-4	0.981	INTRON CAP
2L	18780117	2L_18780117_SNP [dm3] 2L_18780117_SNP [dm6]	T	G	4.239e^-4	0.981	UTR_5_PRIME ham	TF binding site BDTNP1_TFBS_twi
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	4.244e^-4	0.981	INTRON spri
3L	8889273	3L_8889273_SNP [dm3] 3L_8896173_SNP [dm6]	G	A	4.255e^-4	0.981	SYNONYMOUS_CODING TrpA1	TF binding site mE1_TFBS_cad
X	13363866	X_13363866_SNP [dm3] X_13469833_SNP [dm6]	A	G	4.256e^-4	0.981	INTRON Neto	TF binding site mE1_TFBS_HSA
2L	15610070	2L_15610070_SNP [dm3] 2L_15610070_SNP [dm6]	G	C	4.256e^-4	0.981	UPSTREAM CR44865 DOWNSTREAM CG15255 INTERGENIC
3L	1629112	3L_1629112_SNP [dm3] 3L_1629112_SNP [dm6]	G	C	4.264e^-4	0.981	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	1629549	3L_1629549_SNP [dm3] 3L_1629549_SNP [dm6]	C	T	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629562	3L_1629562_SNP [dm3] 3L_1629562_SNP [dm6]	T	C	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629564	3L_1629564_SNP [dm3] 3L_1629564_SNP [dm6]	C	T	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629567	3L_1629567_SNP [dm3] 3L_1629567_SNP [dm6]	A	T	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629595	3L_1629595_SNP [dm3] 3L_1629595_SNP [dm6]	C	G	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629606	3L_1629606_SNP [dm3] 3L_1629606_SNP [dm6]	A	G	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629641	3L_1629641_SNP [dm3] 3L_1629641_SNP [dm6]	G	T	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629655	3L_1629655_SNP [dm3] 3L_1629655_SNP [dm6]	A	G	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629656	3L_1629656_SNP [dm3] 3L_1629656_SNP [dm6]	T	A	4.264e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1635924	3L_1635924_SNP [dm3] 3L_1635924_SNP [dm6]	G	T	4.264e^-4	0.981	INTRON nSyb	TF binding site mE1_TFBS_HSA
2R	14947167	2R_14947167_SNP [dm3] 2R_19059662_SNP [dm6]	T	G	4.269e^-4	0.981	START_GAINED CG15109 UTR_5_PRIME CG15109 INTRON CG15109
X	6245714	X_6245714_MNP [dm3] X_6351681_MNP [dm6]	CGA	GTT	4.272e^-4	0.981	UPSTREAM kdn INTRON kdn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9445450	2R_9445450_SNP [dm3] 2R_13557945_SNP [dm6]	C	A	4.274e^-4	0.981	UPSTREAM CG13334 & 2 others DOWNSTREAM link EXON snoRNA:2R:9445410	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17375666	X_17375666_SNP [dm3] X_17481633_SNP [dm6]	G	A	4.276e^-4	0.981	INTRON CG43658
2R	16436501	2R_16436501_SNP [dm3] 2R_20548996_SNP [dm6]	A	G	4.276e^-4	0.981	UPSTREAM Obp57e DOWNSTREAM Cpr57A INTRON Cpr57A & 1 other	regulatory region REDfly_CRMs
3L	14339623	3L_14339623_SNP [dm3] 3L_14346523_SNP [dm6]	C	A	4.282e^-4	0.981	INTRON fz
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	4.284e^-4	0.981	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	4.286e^-4	0.981	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	21903648	2L_21903648_SNP [dm3] 2L_21903648_SNP [dm6]	A	C	4.287e^-4	0.981	NON_SYNONYMOUS_CODING CG1421
2R	12090533	2R_12090533_SNP [dm3] 2R_16203028_SNP [dm6]	G	T	4.296e^-4	0.981	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	10926676	3R_10926676_SNP [dm3] 3R_15100954_SNP [dm6]	T	C	4.296e^-4	0.981	SYNONYMOUS_CODING CG42788	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15131891	2R_15131891_SNP [dm3] 2R_19244386_SNP [dm6]	C	G	4.300e^-4	0.981	DOWNSTREAM cora INTERGENIC
2R	18798100	2R_18798100_SNP [dm3] 2R_22910577_SNP [dm6]	G	T	4.311e^-4	0.981	SYNONYMOUS_CODING nahoda
3R	26317084	3R_26317084_SNP [dm3] 3R_30491362_SNP [dm6]	G	A	4.316e^-4	0.981	SYNONYMOUS_CODING PH4alphaSG2 DOWNSTREAM PH4alphaMP	TF binding site mE1_TFBS_cad
X	4555661	X_4555661_SNP [dm3] X_4661628_SNP [dm6]	C	T	4.322e^-4	0.981	INTRON CG3009	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9871621	2L_9871621_SNP [dm3] 2L_9871621_SNP [dm6]	G	C	4.324e^-4	0.981	INTRON nAChRalpha6
3L	9676307	3L_9676307_SNP [dm3] 3L_9683207_SNP [dm6]	C	T	4.328e^-4	0.981	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16871389	3L_16871389_SNP [dm3] 3L_16878289_SNP [dm6]	C	T	4.329e^-4	0.981	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_HSA
3L	1629316	3L_1629316_SNP [dm3] 3L_1629316_SNP [dm6]	C	T	4.333e^-4	0.981	UPSTREAM CG13928 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	413029	2R_413029_SNP [dm3] 2R_4525524_SNP [dm6]	C	T	4.336e^-4	0.981	INTERGENIC	transposable element FlyBase
3L	3037222	3L_3037222_SNP [dm3] 3L_3037222_SNP [dm6]	A	G	4.343e^-4	0.981	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20267013	2L_20267013_SNP [dm3] 2L_20267013_SNP [dm6]	G	A	4.345e^-4	0.981	INTERGENIC
3L	15006684	3L_15006684_SNP [dm3] 3L_15013584_SNP [dm6]	T	C	4.345e^-4	0.981	INTRON Reck	TF binding site BDTNP1_TFBS_dl
2L	12579522	2L_12579522_SNP [dm3] 2L_12579522_SNP [dm6]	T	A	4.358e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	1683569	2R_1683569_SNP [dm3] 2R_5796064_SNP [dm6]	G	T	4.368e^-4	0.981	NON_SYNONYMOUS_CODING Tsp42A
X	3213243	X_3213243_SNP [dm3] X_3319210_SNP [dm6]	G	A	4.385e^-4	0.981	INTRON dnc & 1 other
3L	3037221	3L_3037221_SNP [dm3] 3L_3037221_SNP [dm6]	A	G	4.386e^-4	0.981	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3521629	X_3521629_SNP [dm3] X_3627596_SNP [dm6]	T	A	4.388e^-4	0.981	INTRON AstA-R1
X	18254515	X_18254515_SNP [dm3] X_18360482_SNP [dm6]	C	T	4.394e^-4	0.981	INTRON CG6106	TF binding site mE1_TFBS_chinmo
3L	14469170	3L_14469170_SNP [dm3] 3L_14476070_SNP [dm6]	A	G	4.408e^-4	0.981	INTRON bbg
3L	10767393	3L_10767393_SNP [dm3] 3L_10774293_SNP [dm6]	G	C	4.409e^-4	0.981	DOWNSTREAM CG43245 INTERGENIC
X	5091383	X_5091383_SNP [dm3] X_5197350_SNP [dm6]	G	T	4.413e^-4	0.981	INTRON rg & 1 other
3L	8039452	3L_8039452_SNP [dm3] 3L_8046352_SNP [dm6]	C	T	4.416e^-4	0.981	INTRON nmo
3R	22988459	3R_22988459_SNP [dm3] 3R_27162737_SNP [dm6]	T	C	4.434e^-4	0.981	SYNONYMOUS_CODING CG5909 UPSTREAM ppk31
2L	12526457	2L_12526457_SNP [dm3] 2L_12526457_SNP [dm6]	A	C	4.440e^-4	0.981	INTRON bun
2R	891519	2R_891519_SNP [dm3] 2R_5004014_SNP [dm6]	T	G	4.443e^-4	0.981	INTRON Ir41a	transposable element FlyBase
3R	12956061	3R_12956061_SNP [dm3] 3R_17130339_SNP [dm6]	A	G	4.447e^-4	0.981	SYNONYMOUS_CODING CG17475 DOWNSTREAM CG4053	TF binding site mE1_TFBS_cad
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	4.452e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	27835522	3R_27835522_SNP [dm3] 3R_32009800_SNP [dm6]	A	T	4.459e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	8622748	X_8622748_SNP [dm3] X_8728715_SNP [dm6]	G	C	4.464e^-4	0.981	INTERGENIC
2R	20148158	2R_20148158_SNP [dm3] 2R_24260635_SNP [dm6]	C	T	4.476e^-4	0.981	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	3037289	3L_3037289_SNP [dm3] 3L_3037289_SNP [dm6]	T	G	4.485e^-4	0.981	INTRON CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6682640	3L_6682640_SNP [dm3] 3L_6689540_SNP [dm6]	C	G	4.486e^-4	0.981	UTR_3_PRIME SP1173 DOWNSTREAM SP1173
3L	12541657	3L_12541657_SNP [dm3] 3L_12548557_SNP [dm6]	A	T	4.487e^-4	0.981	INTRON sowah
X	13171749	X_13171749_SNP [dm3] X_13277716_SNP [dm6]	G	T	4.496e^-4	0.981	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16824362	X_16824362_SNP [dm3] X_16930329_SNP [dm6]	C	T	4.502e^-4	0.981	INTRON CG4928
X	11231636	X_11231636_SNP [dm3] X_11337603_SNP [dm6]	C	A	4.542e^-4	0.981	SYNONYMOUS_CODING Kap3
3R	17353858	3R_17353858_SNP [dm3] 3R_21528136_SNP [dm6]	T	C	4.558e^-4	0.981	UTR_3_PRIME CG7956 DOWNSTREAM CG7956	TF binding site BDTNP1_TFBS_slp1
3R	17755536	3R_17755536_SNP [dm3] 3R_21929814_SNP [dm6]	A	C	4.566e^-4	0.981	INTERGENIC
3R	9946368	3R_9946368_SNP [dm3] 3R_14120646_SNP [dm6]	A	T	4.569e^-4	0.981	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5271952	X_5271952_SNP [dm3] X_5377919_SNP [dm6]	G	T	4.574e^-4	0.981	INTRON SK	TF binding site mE1_TFBS_inv
3L	7820493	3L_7820493_SNP [dm3] 3L_7827393_SNP [dm6]	T	A	4.576e^-4	0.981	INTRON Pdp1
3R	26480303	3R_26480303_SNP [dm3] 3R_30654581_SNP [dm6]	C	T	4.580e^-4	0.981	INTERGENIC
2L	2077693	2L_2077693_SNP [dm3] 2L_2077693_SNP [dm6]	A	T	4.586e^-4	0.981	INTRON dpr3
3L	3714928	3L_3714928_SNP [dm3] 3L_3714928_SNP [dm6]	G	A	4.591e^-4	0.981	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
2L	5556071	2L_5556071_SNP [dm3] 2L_5556071_SNP [dm6]	G	A	4.594e^-4	0.981	DOWNSTREAM CG14017 INTRON GluRIIA
X	10559409	X_10559409_SNP [dm3] X_10665376_SNP [dm6]	A	C	4.594e^-4	0.981	INTRON X11Lbeta
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	4.595e^-4	0.981	DOWNSTREAM mthl13 INTRON CG33144
3L	10449904	3L_10449904_SNP [dm3] 3L_10456804_SNP [dm6]	A	G	4.611e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16442154	X_16442154_SNP [dm3] X_16548121_SNP [dm6]	A	C	4.613e^-4	0.981	UPSTREAM CG9902 DOWNSTREAM Arp2 INTERGENIC	transposable element FlyBase
2L	2589342	2L_2589342_SNP [dm3] 2L_2589342_SNP [dm6]	C	T	4.639e^-4	0.981	INTERGENIC
3R	19231428	3R_19231428_SNP [dm3] 3R_23405706_SNP [dm6]	A	G	4.642e^-4	0.981	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
X	21453694	X_21453694_SNP [dm3] X_21582667_SNP [dm6]	G	C	4.649e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	15608991	2L_15608991_SNP [dm3] 2L_15608991_SNP [dm6]	A	T	4.657e^-4	0.981	INTERGENIC
3L	6694571	3L_6694571_INS [dm3] 3L_6701471_INS [dm6]	T	TT	4.672e^-4	0.981	INTRON SP1173
2R	13173819	2R_13173819_SNP [dm3] 2R_17286314_SNP [dm6]	C	G	4.675e^-4	0.981	INTRON mbl
2L	15623358	2L_15623358_SNP [dm3] 2L_15623358_SNP [dm6]	G	A	4.677e^-4	0.981	SYNONYMOUS_CODING Or35a
3R	25635577	3R_25635577_SNP [dm3] 3R_29809855_SNP [dm6]	T	G	4.679e^-4	0.981	INTRON ca	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8615059	2R_8615059_SNP [dm3] 2R_12727554_SNP [dm6]	G	T	4.681e^-4	0.981	INTRON CG42663
X	7887144	X_7887144_SNP [dm3] X_7993111_SNP [dm6]	C	T	4.690e^-4	0.981	INTERGENIC
2R	6981077	2R_6981077_SNP [dm3] 2R_11093572_SNP [dm6]	T	C	4.691e^-4	0.981	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6245704	X_6245704_INS [dm3] X_6351671_INS [dm6]	C	CG	4.692e^-4	0.981	UPSTREAM kdn INTRON kdn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	5023973	2R_5023973_SNP [dm3] 2R_9136468_SNP [dm6]	C	T	4.696e^-4	0.981	INTRON alc
3L	9336802	3L_9336802_SNP [dm3] 3L_9343702_SNP [dm6]	A	T	4.701e^-4	0.981	UPSTREAM PGRP-LC INTRON PGRP-LC
2R	11585560	2R_11585560_SNP [dm3] 2R_15698055_SNP [dm6]	C	G	4.706e^-4	0.981	DOWNSTREAM CG30080 & 2 others INTERGENIC	TF binding site mE1_TFBS_bab1
3L	3714953	3L_3714953_SNP [dm3] 3L_3714953_SNP [dm6]	T	C	4.708e^-4	0.981	UTR_3_PRIME CG32264 DOWNSTREAM CG43089
2R	17963317	2R_17963317_SNP [dm3] 2R_22075812_SNP [dm6]	T	A	4.709e^-4	0.981	UPSTREAM GlcT-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22094473	3R_22094473_SNP [dm3] 3R_26268751_SNP [dm6]	C	T	4.711e^-4	0.981	SYNONYMOUS_CODING CG6154	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17739638	2R_17739638_SNP [dm3] 2R_21852133_SNP [dm6]	T	C	4.720e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad
3L	16338592	3L_16338592_SNP [dm3] 3L_16345492_SNP [dm6]	C	T	4.724e^-4	0.981	UPSTREAM CG33257 DOWNSTREAM CG4998 INTERGENIC
2R	6233336	2R_6233336_SNP [dm3] 2R_10345831_SNP [dm6]	G	T	4.731e^-4	0.981	INTRON CG42732
3L	4136336	3L_4136336_SNP [dm3] 3L_4136336_SNP [dm6]	A	G	4.732e^-4	0.981	UPSTREAM RfC4 DOWNSTREAM Rop INTERGENIC
3L	7419459	3L_7419459_SNP [dm3] 3L_7426359_SNP [dm6]	A	T	4.737e^-4	0.981	INTRON CG42458
2L	10004418	2L_10004418_SNP [dm3] 2L_10004418_SNP [dm6]	C	A	4.745e^-4	0.981	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16777373	2R_16777373_SNP [dm3] 2R_20889868_SNP [dm6]	G	A	4.763e^-4	0.981	INTRON otp	TF binding site mE1_TFBS_HSA
X	21923458	X_21923458_SNP [dm3] X_22521622_SNP [dm6]	A	T	4.764e^-4	0.981	INTRON CG17600
3R	21142049	3R_21142049_SNP [dm3] 3R_25316327_SNP [dm6]	G	T	4.768e^-4	0.981	UPSTREAM CG10559 DOWNSTREAM CG10553 INTERGENIC
2R	2782559	2R_2782559_SNP [dm3] 2R_6895054_SNP [dm6]	A	G	4.768e^-4	0.981	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12792165	X_12792165_SNP [dm3] X_12898132_SNP [dm6]	C	A	4.775e^-4	0.981	SYNONYMOUS_CODING CG32650 UPSTREAM Pde9 DOWNSTREAM CG32649	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16687657	3R_16687657_SNP [dm3] 3R_20861935_SNP [dm6]	T	A	4.776e^-4	0.981	SPLICE_SITE_REGION CG3822 INTRON CG3822
2L	6730378	2L_6730378_SNP [dm3] 2L_6730378_SNP [dm6]	A	T	4.780e^-4	0.981	INTRON Liprin-alpha
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	4.784e^-4	0.981	DOWNSTREAM mthl13 INTRON CG33144
2L	17607741	2L_17607741_SNP [dm3] 2L_17607741_SNP [dm6]	C	T	4.789e^-4	0.981	UPSTREAM CR44412 INTERGENIC
X	16824361	X_16824361_SNP [dm3] X_16930328_SNP [dm6]	A	T	4.796e^-4	0.981	INTRON CG4928
3R	17753453	3R_17753453_SNP [dm3] 3R_21927731_SNP [dm6]	A	G	4.797e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	9424128	3L_9424128_SNP [dm3] 3L_9431028_SNP [dm6]	C	T	4.801e^-4	0.981	SYNONYMOUS_CODING MTF-1 UTR_5_PRIME MTF-1 INTRON MTF-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	11074473	X_11074473_SNP [dm3] X_11180440_SNP [dm6]	T	A	4.804e^-4	0.981	INTERGENIC
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	4.809e^-4	0.981	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
X	8647226	X_8647226_SNP [dm3] X_8753193_SNP [dm6]	C	A	4.813e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18364536	3L_18364536_INS [dm3] 3L_18371436_INS [dm6]	T	TT	4.817e^-4	0.981	INTERGENIC
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	4.838e^-4	0.981	INTRON CG31637
2R	17739314	2R_17739314_SNP [dm3] 2R_21851809_SNP [dm6]	C	T	4.846e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_cad
3R	27835450	3R_27835450_DEL [dm3] 3R_32009728_DEL [dm6]	AA	A	4.857e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	10371106	2L_10371106_SNP [dm3] 2L_10371106_SNP [dm6]	C	T	4.868e^-4	0.981	NON_SYNONYMOUS_CODING rho-5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20559717	3R_20559717_SNP [dm3] 3R_24733995_SNP [dm6]	C	T	4.870e^-4	0.981	INTRON tok
3R	19392080	3R_19392080_SNP [dm3] 3R_23566358_SNP [dm6]	G	A	4.872e^-4	0.981	INTRON beat-IV
2R	9357303	2R_9357303_SNP [dm3] 2R_13469798_SNP [dm6]	G	A	4.880e^-4	0.981	INTRON arr
3R	27510550	3R_27510550_INS [dm3] 3R_31684828_INS [dm6]	G	GCTGCTAGCCAGAAG...	4.899e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10689672	2R_10689672_SNP [dm3] 2R_14802167_SNP [dm6]	C	G	4.924e^-4	0.981	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	27835511	3R_27835511_SNP [dm3] 3R_32009789_SNP [dm6]	G	C	4.940e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	9946385	3R_9946385_SNP [dm3] 3R_14120663_SNP [dm6]	C	T	4.960e^-4	0.981	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6026324	2L_6026324_SNP [dm3] 2L_6026324_SNP [dm6]	A	T	4.963e^-4	0.981	INTRON CG9109
2L	10004348	2L_10004348_SNP [dm3] 2L_10004348_SNP [dm6]	G	A	4.966e^-4	0.981	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8848823	2L_8848823_SNP [dm3] 2L_8848823_SNP [dm6]	A	T	4.967e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18677781	2R_18677781_SNP [dm3] 2R_22790276_SNP [dm6]	A	C	4.970e^-4	0.981	INTRON CG42260
X	12315572	X_12315572_DEL [dm3] X_12421539_DEL [dm6]	CTTGCCTTGCACGTGAAAAT...	C	4.974e^-4	0.981	INTERGENIC
X	12315607	X_12315607_DEL [dm3] X_12421574_DEL [dm6]	TTCA	T	4.974e^-4	0.981	INTERGENIC
3R	27505195	3R_27505195_SNP [dm3] 3R_31679473_SNP [dm6]	A	T	4.979e^-4	0.981	INTRON CG11550	TF binding site mE1_TFBS_sens
3R	27505206	3R_27505206_SNP [dm3] 3R_31679484_SNP [dm6]	A	G	4.979e^-4	0.981	INTRON CG11550	TF binding site mE1_TFBS_sens
2L	4016300	2L_4016300_SNP [dm3] 2L_4016300_SNP [dm6]	G	A	5.002e^-4	0.981	INTERGENIC
3R	26590996	3R_26590996_SNP [dm3] 3R_30765274_SNP [dm6]	T	C	5.007e^-4	0.981	UPSTREAM zfh1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	4540663	X_4540663_SNP [dm3] X_4646630_SNP [dm6]	C	T	5.009e^-4	0.981	INTRON HLH4C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13592962	2L_13592962_SNP [dm3] 2L_13592962_SNP [dm6]	C	A	5.010e^-4	0.981	INTRON kuz
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	5.013e^-4	0.981	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3R	20497304	3R_20497304_SNP [dm3] 3R_24671582_SNP [dm6]	C	G	5.015e^-4	0.981	INTRON slo
2L	20260518	2L_20260518_SNP [dm3] 2L_20260518_SNP [dm6]	C	A	5.024e^-4	0.981	INTERGENIC
3L	7754540	3L_7754540_SNP [dm3] 3L_7761440_SNP [dm6]	C	T	5.032e^-4	0.981	UTR_5_PRIME Hn INTRON Hn
3L	11758762	3L_11758762_SNP [dm3] 3L_11765662_SNP [dm6]	T	A	5.038e^-4	0.981	UTR_5_PRIME CG6024 INTRON CG6024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	27835527	3R_27835527_SNP [dm3] 3R_32009805_SNP [dm6]	T	A	5.052e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8667670	3L_8667670_SNP [dm3] 3L_8674570_SNP [dm6]	A	G	5.069e^-4	0.981	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11236285	2L_11236285_SNP [dm3] 2L_11236285_SNP [dm6]	C	G	5.071e^-4	0.981	SYNONYMOUS_CODING ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7568394	3L_7568394_SNP [dm3] 3L_7575294_SNP [dm6]	G	T	5.072e^-4	0.981	INTERGENIC
2L	20126418	2L_20126418_SNP [dm3] 2L_20126418_SNP [dm6]	A	C	5.078e^-4	0.981	INTERGENIC
3L	2897551	3L_2897551_DEL [dm3] 3L_2897551_DEL [dm6]	ATATATTTCCT...	A	5.103e^-4	0.981	INTRON Shab
X	13010393	X_13010393_INS [dm3] X_13116360_INS [dm6]	C	CTCCCCCTTACC...	5.105e^-4	0.981	INTRON CG42237
3L	10793467	3L_10793467_DEL [dm3] 3L_10800367_DEL [dm6]	AGCGCACGA	A	5.107e^-4	0.981	UPSTREAM CG12523 INTERGENIC
3L	16226768	3L_16226768_SNP [dm3] 3L_16233668_SNP [dm6]	T	G	5.122e^-4	0.981	NON_SYNONYMOUS_CODING Hsc20 UPSTREAM l_3_72Dp DOWNSTREAM MED10	TF binding site mE1_TFBS_inv
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	5.134e^-4	0.981	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	12400535	X_12400535_SNP [dm3] X_12506502_SNP [dm6]	C	T	5.136e^-4	0.981	INTRON CG2556
3L	14896395	3L_14896395_SNP [dm3] 3L_14903295_SNP [dm6]	G	A	5.137e^-4	0.981	UPSTREAM DCX-EMAP INTERGENIC
3L	936635	3L_936635_INS [dm3] 3L_936635_INS [dm6]	G	GCATCCG	5.155e^-4	0.981	INTRON Glut1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7978465	X_7978465_SNP [dm3] X_8084432_SNP [dm6]	A	T	5.163e^-4	0.981	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo
X	10426873	X_10426873_DEL [dm3] X_10532840_DEL [dm6]	GATACAC	G	5.164e^-4	0.981	INTRON spri
2R	10425900	2R_10425900_SNP [dm3] 2R_14538395_SNP [dm6]	A	C	5.179e^-4	0.981	INTRON ttv
3L	7836840	3L_7836840_SNP [dm3] 3L_7843740_SNP [dm6]	G	C	5.180e^-4	0.981	INTRON Pdp1	regulatory region REDfly_CRMs
2R	12049519	2R_12049519_SNP [dm3] 2R_16162014_SNP [dm6]	A	T	5.181e^-4	0.981	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14525216	3L_14525216_DEL [dm3] 3L_14532116_DEL [dm6]	CT	C	5.181e^-4	0.981	INTRON bbg
3L	1586236	3L_1586236_SNP [dm3] 3L_1586236_SNP [dm6]	A	T	5.194e^-4	0.981	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	11230900	2L_11230900_SNP [dm3] 2L_11230900_SNP [dm6]	G	A	5.196e^-4	0.981	INTRON ab
3L	1629594	3L_1629594_SNP [dm3] 3L_1629594_SNP [dm6]	T	A	5.215e^-4	0.981	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13171767	X_13171767_SNP [dm3] X_13277734_SNP [dm6]	C	T	5.218e^-4	0.981	INTRON HDAC4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11737079	2R_11737079_SNP [dm3] 2R_15849574_SNP [dm6]	C	T	5.228e^-4	0.981	UTR_5_PRIME tun
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	5.251e^-4	0.981	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15876381	3R_15876381_SNP [dm3] 3R_20050659_SNP [dm6]	G	C	5.253e^-4	0.981	INTRON CG17193
2L	14336358	2L_14336358_SNP [dm3] 2L_14336358_SNP [dm6]	T	C	5.258e^-4	0.981	INTRON CG33090
3L	10274238	3L_10274238_SNP [dm3] 3L_10281138_SNP [dm6]	G	A	5.269e^-4	0.981	INTERGENIC
3R	9946245	3R_9946245_SNP [dm3] 3R_14120523_SNP [dm6]	A	G	5.273e^-4	0.981	INTRON Abi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7837702	3L_7837702_SNP [dm3] 3L_7844602_SNP [dm6]	C	G	5.276e^-4	0.981	INTRON Pdp1	regulatory region REDfly_CRMs
X	7006905	X_7006905_INS [dm3] X_7112872_INS [dm6]	T	TT	5.286e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12717521	3L_12717521_SNP [dm3] 3L_12724421_SNP [dm6]	T	A	5.287e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	5.288e^-4	0.981	INTERGENIC
X	15457637	X_15457637_SNP [dm3] X_15563604_SNP [dm6]	G	A	5.290e^-4	0.981	INTERGENIC
3L	13648578	3L_13648578_SNP [dm3] 3L_13655478_SNP [dm6]	A	G	5.291e^-4	0.981	INTRON bru-3
2R	9446287	2R_9446287_SNP [dm3] 2R_13558782_SNP [dm6]	C	T	5.294e^-4	0.981	SYNONYMOUS_CODING CG13334 UPSTREAM snoRNA:2R:9445205 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7801460	3L_7801460_SNP [dm3] 3L_7808360_SNP [dm6]	A	G	5.302e^-4	0.981	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26754871	3R_26754871_SNP [dm3] 3R_30929149_SNP [dm6]	T	C	5.302e^-4	0.981	SYNONYMOUS_CODING Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11533188	3R_11533188_SNP [dm3] 3R_15707466_SNP [dm6]	C	G	5.303e^-4	0.981	SYNONYMOUS_CODING CG5404
X	5336597	X_5336597_INS [dm3] X_5442564_INS [dm6]	T	TGGGCAAAAAAG...	5.308e^-4	0.981	INTERGENIC
2R	17513991	2R_17513991_SNP [dm3] 2R_21626486_SNP [dm6]	T	A	5.312e^-4	0.981	SYNONYMOUS_CODING mahj	TF binding site mE1_TFBS_sens
2R	17006695	2R_17006695_SNP [dm3] 2R_21119190_SNP [dm6]	G	A	5.323e^-4	0.981	SYNONYMOUS_CODING CG9394 INTRON ktub	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19564549	2R_19564549_SNP [dm3] 2R_23677026_SNP [dm6]	C	T	5.334e^-4	0.981	SYNONYMOUS_CODING Pde8 UTR_5_PRIME Pde8 INTRON Pde8
3L	10689860	3L_10689860_SNP [dm3] 3L_10696760_SNP [dm6]	C	T	5.345e^-4	0.981	UTR_5_PRIME NijA
3L	10266111	3L_10266111_SNP [dm3] 3L_10273011_SNP [dm6]	T	A	5.353e^-4	0.981	UPSTREAM Or67d INTERGENIC	regulatory region REDfly_CRMs
2R	3921266	2R_3921266_SNP [dm3] 2R_8033761_SNP [dm6]	A	G	5.375e^-4	0.981	INTRON Optix
3R	20676835	3R_20676835_SNP [dm3] 3R_24851113_SNP [dm6]	A	C	5.383e^-4	0.981	SYNONYMOUS_CODING CG7006 UPSTREAM nct DOWNSTREAM Esp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8452205	3R_8452205_SNP [dm3] 3R_12626483_SNP [dm6]	T	A	5.389e^-4	0.981	INTRON Vha55	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	17961891	2R_17961891_SNP [dm3] 2R_22074386_SNP [dm6]	A	C	5.391e^-4	0.981	NON_SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11093984	2L_11093984_SNP [dm3] 2L_11093984_SNP [dm6]	T	G	5.402e^-4	0.981	NON_SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10273767	2R_10273767_SNP [dm3] 2R_14386262_SNP [dm6]	T	C	5.402e^-4	0.981	DOWNSTREAM Dh44-R1 INTERGENIC
3L	6326441	3L_6326441_SNP [dm3] 3L_6333341_SNP [dm6]	C	A	5.414e^-4	0.981	INTRON CG13300	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	9384580	3R_9384580_SNP [dm3] 3R_13558858_SNP [dm6]	C	A	5.421e^-4	0.981	INTERGENIC
2R	10897837	2R_10897837_SNP [dm3] 2R_15010332_SNP [dm6]	T	G	5.434e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
3R	27835525	3R_27835525_SNP [dm3] 3R_32009803_SNP [dm6]	C	G	5.441e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	9951550	3L_9951550_INS [dm3] 3L_9958450_INS [dm6]	A	AGTTGTCA	5.444e^-4	0.981	INTRON CG34356
3L	14310778	3L_14310778_INS [dm3] 3L_14317678_INS [dm6]	T	TTCGAT	5.445e^-4	0.981	INTRON fz
3R	22253062	3R_22253062_SNP [dm3] 3R_26427340_SNP [dm6]	T	C	5.446e^-4	0.981	INTRON CR31084
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	5.451e^-4	0.981	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	17177414	3L_17177414_SNP [dm3] 3L_17184314_SNP [dm6]	T	G	5.453e^-4	0.981	INTRON Rbp6
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	5.454e^-4	0.981	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	21325762	2L_21325762_SNP [dm3] 2L_21325762_SNP [dm6]	G	C	5.465e^-4	0.981	UPSTREAM CR42696 INTERGENIC
2L	10374235	2L_10374235_SNP [dm3] 2L_10374235_SNP [dm6]	T	G	5.471e^-4	0.981	UTR_3_PRIME CG33303 UPSTREAM rho-5	TF binding site mE1_TFBS_cad
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	5.475e^-4	0.981	INTERGENIC
X	7883626	X_7883626_SNP [dm3] X_7989593_SNP [dm6]	C	T	5.478e^-4	0.981	INTERGENIC
2L	10674149	2L_10674149_SNP [dm3] 2L_10674149_SNP [dm6]	A	T	5.483e^-4	0.981	INTERGENIC
3R	24380884	3R_24380884_SNP [dm3] 3R_28555162_SNP [dm6]	A	G	5.492e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13951268	3R_13951268_SNP [dm3] 3R_18125546_SNP [dm6]	C	T	5.499e^-4	0.981	INTRON sr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2R	14613864	2R_14613864_INS [dm3] 2R_18726359_INS [dm6]	G	GTTAG	5.508e^-4	0.981	INTRON Hs3st-A
3R	7610763	3R_7610763_SNP [dm3] 3R_11785041_SNP [dm6]	C	T	5.534e^-4	0.981	NON_SYNONYMOUS_CODING CG17360
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	5.535e^-4	0.981	INTRON nemy
3L	12348188	3L_12348188_SNP [dm3] 3L_12355088_SNP [dm6]	C	T	5.536e^-4	0.981	INTERGENIC
2R	1738797	2R_1738797_SNP [dm3] 2R_5851292_SNP [dm6]	A	C	5.541e^-4	0.981	INTRON dpr12
2R	3921264	2R_3921264_SNP [dm3] 2R_8033759_SNP [dm6]	T	A	5.545e^-4	0.981	INTRON Optix
X	16023760	X_16023760_SNP [dm3] X_16129727_SNP [dm6]	G	T	5.554e^-4	0.981	INTRON disco-r	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14310788	3L_14310788_SNP [dm3] 3L_14317688_SNP [dm6]	T	G	5.556e^-4	0.981	INTRON fz
3R	26318078	3R_26318078_SNP [dm3] 3R_30492356_SNP [dm6]	G	A	5.567e^-4	0.981	SPLICE_SITE_REGION PH4alphaMP DOWNSTREAM PH4alphaSG2 INTRON PH4alphaMP
3R	22249633	3R_22249633_SNP [dm3] 3R_26423911_SNP [dm6]	T	C	5.602e^-4	0.981	DOWNSTREAM CG6503 INTERGENIC
X	21449110	X_21449110_INS [dm3] X_21578083_INS [dm6]	T	TGT	5.605e^-4	0.981	INTERGENIC
X	13010385	X_13010385_INS [dm3] X_13116352_INS [dm6]	C	CAATTTC	5.624e^-4	0.981	INTRON CG42237
3R	1596670	3R_1596670_SNP [dm3] 3R_5770948_SNP [dm6]	G	C	5.625e^-4	0.981	INTRON CG2082
3L	3130040	3L_3130040_SNP [dm3] 3L_3130040_SNP [dm6]	G	A	5.627e^-4	0.981	INTRON CG11537
2L	2246207	2L_2246207_SNP [dm3] 2L_2246207_SNP [dm6]	G	A	5.628e^-4	0.981	DOWNSTREAM CG4267 & 1 other EXON CR42859
X	4241475	X_4241475_SNP [dm3] X_4347442_SNP [dm6]	G	T	5.643e^-4	0.981	UPSTREAM norpA INTRON norpA
3L	10289456	3L_10289456_SNP [dm3] 3L_10296356_SNP [dm6]	C	A	5.664e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17759634	3R_17759634_SNP [dm3] 3R_21933912_SNP [dm6]	T	C	5.665e^-4	0.981	INTERGENIC
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	5.673e^-4	0.981	SYNONYMOUS_CODING Sytalpha
2R	6180657	2R_6180657_INS [dm3] 2R_10293152_INS [dm6]	A	AATTGAGTAGC...	5.680e^-4	0.981	INTRON CAP
2R	14613849	2R_14613849_SNP [dm3] 2R_18726344_SNP [dm6]	T	G	5.682e^-4	0.981	INTRON Hs3st-A
X	16978339	X_16978339_SNP [dm3] X_17084306_SNP [dm6]	T	G	5.691e^-4	0.981	SYNONYMOUS_CODING CG8945 DOWNSTREAM CG4955
3R	14747768	3R_14747768_SNP [dm3] 3R_18922046_SNP [dm6]	G	T	5.700e^-4	0.981	INTRON Xrp1	TF binding site BDTNP1_TFBS_dl
3R	8438541	3R_8438541_DEL [dm3] 3R_12612819_DEL [dm6]	GCAGGAGGTG	G	5.707e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	2932621	X_2932621_SNP [dm3] X_3038588_SNP [dm6]	C	T	5.714e^-4	0.981	INTRON kirre
X	16400952	X_16400952_SNP [dm3] X_16506919_SNP [dm6]	C	G	5.724e^-4	0.981	INTRON para
3R	19197850	3R_19197850_SNP [dm3] 3R_23372128_SNP [dm6]	T	G	5.753e^-4	0.981	UPSTREAM CG42827 EXON CR44322
3R	27122929	3R_27122929_SNP [dm3] 3R_31297207_SNP [dm6]	C	G	5.757e^-4	0.981	INTERGENIC
2L	10392038	2L_10392038_SNP [dm3] 2L_10392038_SNP [dm6]	T	C	5.758e^-4	0.981	SYNONYMOUS_CODING da	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	12004217	X_12004217_SNP [dm3] X_12110184_SNP [dm6]	T	C	5.766e^-4	0.981	NON_SYNONYMOUS_CODING CG2750 INTRON CR43960 & 1 other
3L	14501330	3L_14501330_SNP [dm3] 3L_14508230_SNP [dm6]	G	A	5.767e^-4	0.981	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5172464	3L_5172464_SNP [dm3] 3L_5179364_SNP [dm6]	A	T	5.769e^-4	0.981	INTRON shep
2L	2159967	2L_2159967_SNP [dm3] 2L_2159967_SNP [dm6]	A	C	5.772e^-4	0.981	SYNONYMOUS_CODING aop	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9088315	3L_9088315_SNP [dm3] 3L_9095215_SNP [dm6]	A	G	5.777e^-4	0.981	DOWNSTREAM CG32032 INTERGENIC
3L	14371998	3L_14371998_SNP [dm3] 3L_14378898_SNP [dm6]	G	T	5.794e^-4	0.981	INTERGENIC
3R	9907663	3R_9907663_SNP [dm3] 3R_14081941_SNP [dm6]	G	C	5.800e^-4	0.981	UTR_3_PRIME foxo	TF binding site mE1_TFBS_HSA
X	13411201	X_13411201_SNP [dm3] X_13517168_SNP [dm6]	A	T	5.804e^-4	0.981	INTRON Neto
3R	27835505	3R_27835505_INS [dm3] 3R_32009783_INS [dm6]	AA	GGG	5.806e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	27835509	3R_27835509_SNP [dm3] 3R_32009787_SNP [dm6]	T	C	5.806e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	27835521	3R_27835521_SNP [dm3] 3R_32009799_SNP [dm6]	T	G	5.806e^-4	0.981	INTRON heph	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	14875574	3L_14875574_SNP [dm3] 3L_14882474_SNP [dm6]	A	C	5.809e^-4	0.981	DOWNSTREAM CG17839 INTERGENIC
2L	19723176	2L_19723176_SNP [dm3] 2L_19723176_SNP [dm6]	T	G	5.811e^-4	0.981	INTRON Lar
3L	6785353	3L_6785353_SNP [dm3] 3L_6792253_SNP [dm6]	C	T	5.828e^-4	0.981	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	20144402	2L_20144402_SNP [dm3] 2L_20144402_SNP [dm6]	G	A	5.851e^-4	0.981	INTERGENIC
3L	4876217	3L_4876217_SNP [dm3] 3L_4876217_SNP [dm6]	A	T	5.857e^-4	0.981	INTRON CG17150
2L	3817802	2L_3817802_SNP [dm3] 2L_3817802_SNP [dm6]	C	G	5.869e^-4	0.981	EXON CR44077	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16098162	X_16098162_SNP [dm3] X_16204129_SNP [dm6]	C	T	5.871e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
X	16978317	X_16978317_SNP [dm3] X_17084284_SNP [dm6]	A	G	5.881e^-4	0.981	SYNONYMOUS_CODING CG8945 DOWNSTREAM CG4955
2R	9538277	2R_9538277_DEL [dm3] 2R_13650772_DEL [dm6]	CTATAAAAGCC...	C	5.888e^-4	0.981	INTRON fas
2L	4692879	2L_4692879_SNP [dm3] 2L_4692879_SNP [dm6]	T	A	5.891e^-4	0.981	INTERGENIC
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	5.893e^-4	0.981	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3L	6695126	3L_6695126_SNP [dm3] 3L_6702026_SNP [dm6]	G	A	5.895e^-4	0.981	INTRON SP1173
X	17074177	X_17074177_SNP [dm3] X_17180144_SNP [dm6]	T	A	5.897e^-4	0.981	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
X	3351839	X_3351839_SNP [dm3] X_3457806_SNP [dm6]	C	A	5.901e^-4	0.981	INTRON CR44999
X	4075926	X_4075926_SNP [dm3] X_4181893_SNP [dm6]	A	C	5.932e^-4	0.981	INTRON Fas2
3L	6679585	3L_6679585_SNP [dm3] 3L_6686485_SNP [dm6]	T	C	5.934e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_inv
3R	8434001	3R_8434001_SNP [dm3] 3R_12608279_SNP [dm6]	T	C	5.940e^-4	0.981	INTERGENIC
X	6483146	X_6483146_SNP [dm3] X_6589113_SNP [dm6]	C	G	5.941e^-4	0.981	UTR_3_PRIME CG34417 UPSTREAM CG17717	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11811519	2L_11811519_SNP [dm3] 2L_11811519_SNP [dm6]	G	T	5.942e^-4	0.981	INTRON CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11811549	2L_11811549_SNP [dm3] 2L_11811549_SNP [dm6]	C	G	5.942e^-4	0.981	INTRON CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11181082	3R_11181082_SNP [dm3] 3R_15355360_SNP [dm6]	G	T	5.953e^-4	0.981	SPLICE_SITE_REGION Atg4b INTRON Atg4b
2R	16864541	2R_16864541_SNP [dm3] 2R_20977036_SNP [dm6]	A	G	5.966e^-4	0.981	UPSTREAM CG9344 DOWNSTREAM CG15650 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	1792847	2L_1792847_SNP [dm3] 2L_1792847_SNP [dm6]	T	C	5.982e^-4	0.981	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2L	1271310	2L_1271310_INS [dm3] 2L_1271310_INS [dm6]	A	CAAAACAAAAGCC...	5.990e^-4	0.981	INTRON robo3
X	3224848	X_3224848_DEL [dm3] X_3330815_DEL [dm6]	TT	T	5.994e^-4	0.981	INTRON CR44886 & 1 other
X	13691794	X_13691794_SNP [dm3] X_13797761_SNP [dm6]	T	A	5.994e^-4	0.981	UPSTREAM CG10996 INTRON inaE
3L	20065646	3L_20065646_SNP [dm3] 3L_20072546_SNP [dm6]	T	G	6.000e^-4	0.981	INTRON sNPF-R
3R	27248695	3R_27248695_SNP [dm3] 3R_31422973_SNP [dm6]	A	G	6.003e^-4	0.981	INTRON Gprk2
3L	11835815	3L_11835815_SNP [dm3] 3L_11842715_SNP [dm6]	A	G	6.011e^-4	0.981	INTERGENIC
3L	18361619	3L_18361619_SNP [dm3] 3L_18368519_SNP [dm6]	T	C	6.017e^-4	0.981	INTERGENIC
X	10905461	X_10905461_SNP [dm3] X_11011428_SNP [dm6]	C	T	6.032e^-4	0.981	INTRON CG42339	TF binding site mE1_TFBS_HSA
3L	13486721	3L_13486721_SNP [dm3] 3L_13493621_SNP [dm6]	C	G	6.033e^-4	0.981	INTRON Tgi
2L	513219	2L_513219_SNP [dm3] 2L_513219_SNP [dm6]	G	A	6.033e^-4	0.981	INTRON ush	regulatory region REDfly_CRMs TF binding site mE1_TFBS_inv
2L	11864790	2L_11864790_SNP [dm3] 2L_11864790_SNP [dm6]	C	T	6.041e^-4	0.981	INTRON Pde1c
2L	1947620	2L_1947620_SNP [dm3] 2L_1947620_SNP [dm6]	G	A	6.046e^-4	0.981	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10445506	3L_10445506_SNP [dm3] 3L_10452406_SNP [dm6]	T	A	6.049e^-4	0.981	INTERGENIC
2R	9966712	2R_9966712_SNP [dm3] 2R_14079207_SNP [dm6]	T	C	6.062e^-4	0.981	INTRON Prosap
3L	9506793	3L_9506793_SNP [dm3] 3L_9513693_SNP [dm6]	C	G	6.068e^-4	0.981	UPSTREAM CG33702 DOWNSTREAM CG33700 EXON CR33701
3R	19923798	3R_19923798_SNP [dm3] 3R_24098076_SNP [dm6]	T	A	6.081e^-4	0.981	INTRON 4EHP
2R	8361408	2R_8361408_SNP [dm3] 2R_12473903_SNP [dm6]	G	A	6.100e^-4	0.981	UTR_3_PRIME CG8550 UPSTREAM Dh44-R2	TF binding site mE1_TFBS_Trl
3R	19231019	3R_19231019_SNP [dm3] 3R_23405297_SNP [dm6]	C	T	6.101e^-4	0.981	UPSTREAM Ir94e DOWNSTREAM Ir94d INTERGENIC
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	6.105e^-4	0.981	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
2R	14103866	2R_14103866_SNP [dm3] 2R_18216361_SNP [dm6]	A	G	6.107e^-4	0.981	INTERGENIC
X	21469807	X_21469807_SNP [dm3] X_21598780_SNP [dm6]	A	T	6.111e^-4	0.981	INTERGENIC
3R	7658705	3R_7658705_SNP [dm3] 3R_11832983_SNP [dm6]	G	C	6.115e^-4	0.981	INTRON CG6959
3R	17757812	3R_17757812_SNP [dm3] 3R_21932090_SNP [dm6]	A	G	6.116e^-4	0.981	INTERGENIC
X	17076683	X_17076683_SNP [dm3] X_17182650_SNP [dm6]	A	G	6.120e^-4	0.981	DOWNSTREAM CR44026 INTRON baz
2R	8140841	2R_8140841_SNP [dm3] 2R_12253336_SNP [dm6]	C	T	6.143e^-4	0.981	UPSTREAM CG13168 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	11063911	2L_11063911_SNP [dm3] 2L_11063911_SNP [dm6]	G	A	6.151e^-4	0.981	INTRON Samuel
3L	14560642	3L_14560642_SNP [dm3] 3L_14567542_SNP [dm6]	C	A	6.166e^-4	0.981	INTRON CG42758
3L	17111400	3L_17111400_SNP [dm3] 3L_17118300_SNP [dm6]	A	G	6.187e^-4	0.981	INTRON Rbp6
3R	16687899	3R_16687899_SNP [dm3] 3R_20862177_SNP [dm6]	T	A	6.196e^-4	0.981	SPLICE_SITE_REGION CG3822 SYNONYMOUS_CODING CG3822
2L	6497753	2L_6497753_SNP [dm3] 2L_6497753_SNP [dm6]	T	C	6.199e^-4	0.981	UPSTREAM CG31637 DOWNSTREAM CG31638 INTRON CG9550
3L	12826447	3L_12826447_SNP [dm3] 3L_12833347_SNP [dm6]	A	C	6.200e^-4	0.981	UPSTREAM CG10960 INTRON CG10960	TF binding site BDTNP1_TFBS_dl
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	6.201e^-4	0.981	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	26414289	3R_26414289_SNP [dm3] 3R_30588567_SNP [dm6]	T	C	6.217e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	10863807	2R_10863807_SNP [dm3] 2R_14976302_SNP [dm6]	A	G	6.225e^-4	0.981	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17074180	X_17074180_SNP [dm3] X_17180147_SNP [dm6]	T	C	6.227e^-4	0.981	INTRON baz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12781347	2R_12781347_SNP [dm3] 2R_16893842_SNP [dm6]	A	G	6.229e^-4	0.981	INTRON CG8910
2R	18778889	2R_18778889_SNP [dm3] 2R_22891366_SNP [dm6]	A	T	6.232e^-4	0.981	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
2L	21787092	2L_21787092_SNP [dm3] 2L_21787092_SNP [dm6]	G	A	6.233e^-4	0.981	INTRON CG31612	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	6.241e^-4	0.981	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	4892066	2L_4892066_SNP [dm3] 2L_4892066_SNP [dm6]	T	G	6.242e^-4	0.981	UPSTREAM CG3036 & 1 other DOWNSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA
3L	16170932	3L_16170932_SNP [dm3] 3L_16177832_SNP [dm6]	G	T	6.246e^-4	0.981	UPSTREAM CR45755 DOWNSTREAM CR45754 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	6.250e^-4	0.981	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13851737	2L_13851737_SNP [dm3] 2L_13851737_SNP [dm6]	A	G	6.254e^-4	0.981	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	3532484	X_3532484_SNP [dm3] X_3638451_SNP [dm6]	G	A	6.259e^-4	0.981	INTRON AstA-R1
X	8327919	X_8327919_SNP [dm3] X_8433886_SNP [dm6]	C	A	6.259e^-4	0.981	UPSTREAM CG32712 DOWNSTREAM CG12125 & 1 other INTERGENIC
X	3222045	X_3222045_SNP [dm3] X_3328012_SNP [dm6]	A	T	6.259e^-4	0.981	INTRON CR44886 & 1 other
X	6883413	X_6883413_SNP [dm3] X_6989380_SNP [dm6]	T	A	6.260e^-4	0.981	INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13794562	X_13794562_SNP [dm3] X_13900529_SNP [dm6]	T	C	6.276e^-4	0.981	INTRON mamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13402641	3L_13402641_SNP [dm3] 3L_13409541_SNP [dm6]	G	T	6.280e^-4	0.981	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18798139	2R_18798139_SNP [dm3] 2R_22910616_SNP [dm6]	C	G	6.284e^-4	0.981	INTRON nahoda
2R	1065163	2R_1065163_SNP [dm3] 2R_5177658_SNP [dm6]	A	T	6.286e^-4	0.981	DOWNSTREAM Nipped-A INTERGENIC
2L	10171317	2L_10171317_SNP [dm3] 2L_10171317_SNP [dm6]	C	T	6.287e^-4	0.981	INTRON CG44153
X	13026302	X_13026302_SNP [dm3] X_13132269_SNP [dm6]	A	G	6.287e^-4	0.981	INTRON MFS10 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	4743565	2L_4743565_SNP [dm3] 2L_4743565_SNP [dm6]	C	G	6.296e^-4	0.981	INTRON CG15630
2L	11811532	2L_11811532_SNP [dm3] 2L_11811532_SNP [dm6]	T	A	6.301e^-4	0.981	INTRON CycY	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18090252	2L_18090252_SNP [dm3] 2L_18090252_SNP [dm6]	A	T	6.304e^-4	0.981	DOWNSTREAM CG15153 INTERGENIC
2R	2375717	2R_2375717_INS [dm3] 2R_6488212_INS [dm6]	T	TTGG	6.305e^-4	0.981	INTERGENIC
2R	13058583	2R_13058583_SNP [dm3] 2R_17171078_SNP [dm6]	T	A	6.307e^-4	0.981	INTERGENIC
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	6.317e^-4	0.981	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3L	3006829	3L_3006829_SNP [dm3] 3L_3006829_SNP [dm6]	G	C	6.327e^-4	0.981	INTRON FMRFaR
2L	11221489	2L_11221489_SNP [dm3] 2L_11221489_SNP [dm6]	T	C	6.333e^-4	0.981	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15278056	3L_15278056_SNP [dm3] 3L_15284956_SNP [dm6]	A	G	6.333e^-4	0.981	INTERGENIC
2L	7134626	2L_7134626_SNP [dm3] 2L_7134626_SNP [dm6]	T	C	6.339e^-4	0.981	UPSTREAM Pvf3 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14503348	3L_14503348_SNP [dm3] 3L_14510248_SNP [dm6]	C	G	6.341e^-4	0.981	UPSTREAM bbg INTRON bbg
2R	11659189	2R_11659189_SNP [dm3] 2R_15771684_SNP [dm6]	A	G	6.348e^-4	0.981	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	20065645	3L_20065645_SNP [dm3] 3L_20072545_SNP [dm6]	T	G	6.370e^-4	0.981	INTRON sNPF-R
3L	7804154	3L_7804154_SNP [dm3] 3L_7811054_SNP [dm6]	A	G	6.372e^-4	0.981	DOWNSTREAM Pdp1 INTERGENIC
2R	19469758	2R_19469758_SNP [dm3] 2R_23582235_SNP [dm6]	C	A	6.373e^-4	0.981	INTRON apt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	224091	2L_224091_SNP [dm3] 2L_224091_SNP [dm6]	G	A	6.373e^-4	0.981	INTRON kis EXON CR44222	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	8361374	2R_8361374_SNP [dm3] 2R_12473869_SNP [dm6]	C	T	6.391e^-4	0.981	UTR_3_PRIME CG8550 UPSTREAM Dh44-R2	TF binding site mE1_TFBS_Trl
3L	7801526	3L_7801526_MNP [dm3] 3L_7808426_MNP [dm6]	TTT	CCA	6.409e^-4	0.981	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18341434	2R_18341434_SNP [dm3] 2R_22453929_SNP [dm6]	T	C	6.431e^-4	0.981	UPSTREAM CG10384 INTERGENIC

By genomic position
Variant impact
Gene name

Tarsus_Length_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results