DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.446e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02187
In_3R_Mo	0.04181

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.1145	0.0285
In_3R_Mo	11.1711	0.0038

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1841 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	3.043e^-6	0.943	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	3.667e^-6	0.943	INTERGENIC
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	4.058e^-6	0.943	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	4.560e^-6	0.943	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	4.966e^-6	0.943	INTRON Hnf4 & 1 other
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	5.559e^-6	0.943	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	7.456e^-6	0.943	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	8.082e^-6	0.943	INTRON dpr3
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	8.418e^-6	0.943	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	8.694e^-6	0.943	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.055e^-5	0.943	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.055e^-5	0.943	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	1.067e^-5	0.943	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	1.107e^-5	0.943	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	1.211e^-5	0.943	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	1.259e^-5	0.943	UTR_3_PRIME CG31030
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	1.312e^-5	0.943	INTRON klg
3R	19048246	3R_19048246_SNP [dm3] 3R_23222524_SNP [dm6]	A	C	1.316e^-5	0.943	UPSTREAM cnc INTRON cnc
3R	25993011	3R_25993011_SNP [dm3] 3R_30167289_SNP [dm6]	A	T	1.329e^-5	0.943	UPSTREAM CG31030 INTRON CG31028
3R	18740517	3R_18740517_SNP [dm3] 3R_22914795_SNP [dm6]	A	G	1.349e^-5	0.943	INTRON klg
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	1.360e^-5	0.943	INTERGENIC
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.560e^-5	0.943	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	1.609e^-5	0.943	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	1.622e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11516189	3L_11516189_SNP [dm3] 3L_11523089_SNP [dm6]	C	T	1.668e^-5	0.943	UTR_3_PRIME Mob2 UPSTREAM CG11714	TF binding site mE1_TFBS_bab1
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	1.673e^-5	0.943	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16722617	X_16722617_SNP [dm3] X_16828584_SNP [dm6]	A	G	1.681e^-5	0.943	UPSTREAM CG13004 INTRON CG13004
3R	25762240	3R_25762240_SNP [dm3] 3R_29936518_SNP [dm6]	G	A	1.690e^-5	0.943	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26005517	3R_26005517_SNP [dm3] 3R_30179795_SNP [dm6]	G	A	1.691e^-5	0.943	UTR_3_PRIME CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	1.736e^-5	0.943	INTRON bbg
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	1.784e^-5	0.943	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	20092704	2R_20092704_SNP [dm3] 2R_24205181_SNP [dm6]	G	T	1.812e^-5	0.943	UTR_3_PRIME CG11406 INTRON CG11406
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.875e^-5	0.943	INTERGENIC
2L	8705308	2L_8705308_SNP [dm3] 2L_8705308_SNP [dm6]	G	A	1.881e^-5	0.943	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	16722596	X_16722596_SNP [dm3] X_16828563_SNP [dm6]	G	T	1.911e^-5	0.943	UPSTREAM CG13004 INTRON CG13004
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.021e^-5	0.943	DOWNSTREAM mthl13 INTRON CG33144
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	2.073e^-5	0.943	DOWNSTREAM mthl13 INTRON CG33144
2R	17504251	2R_17504251_SNP [dm3] 2R_21616746_SNP [dm6]	G	C	2.117e^-5	0.943	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	2.243e^-5	0.943	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	2.272e^-5	0.943	SYNONYMOUS_CODING CG9850
4	442912	4_442912_SNP [dm3] 4_422286_SNP [dm6]	C	T	2.355e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	2.361e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	713145	2L_713145_SNP [dm3] 2L_713145_SNP [dm6]	T	C	2.446e^-5	0.943	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	2.623e^-5	0.943	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22281153	3R_22281153_SNP [dm3] 3R_26455431_SNP [dm6]	C	G	2.623e^-5	0.943	DOWNSTREAM Pdf & 2 others INTERGENIC
3L	4720661	3L_4720661_SNP [dm3] 3L_4720661_SNP [dm6]	A	C	2.701e^-5	0.943	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	2.732e^-5	0.943	INTERGENIC
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	2.950e^-5	0.943	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
X	16722636	X_16722636_SNP [dm3] X_16828603_SNP [dm6]	A	G	3.013e^-5	0.943	UPSTREAM CG13004 INTRON CG13004
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	3.058e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	494445	4_494445_SNP [dm3] 4_473819_SNP [dm6]	G	A	3.113e^-5	0.943	INTRON Asator
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	3.173e^-5	0.943	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	3.411e^-5	0.943	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	3.411e^-5	0.943	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	3.433e^-5	0.943	INTRON Doa
2R	6785385	2R_6785385_SNP [dm3] 2R_10897880_SNP [dm6]	G	T	3.436e^-5	0.943	UTR_5_PRIME CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	3.463e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	3.470e^-5	0.943	INTRON alph
3L	19277239	3L_19277239_SNP [dm3] 3L_19284139_SNP [dm6]	G	A	3.493e^-5	0.943	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2L	7536172	2L_7536172_SNP [dm3] 2L_7536172_SNP [dm6]	G	A	3.556e^-5	0.943	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	3.574e^-5	0.943	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	3.577e^-5	0.943	UPSTREAM CG8012 INTERGENIC
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	3.622e^-5	0.943	SYNONYMOUS_CODING CG9747
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	3.679e^-5	0.943	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3R	23478199	3R_23478199_SNP [dm3] 3R_27652477_SNP [dm6]	C	A	3.683e^-5	0.943	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	11798043	3L_11798043_SNP [dm3] 3L_11804943_SNP [dm6]	A	G	3.710e^-5	0.943	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	3.716e^-5	0.943	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	3.729e^-5	0.943	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	3.759e^-5	0.943	UTR_3_PRIME Sema-2a
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	3.779e^-5	0.943	INTRON Sema-2b
2L	18295289	2L_18295289_SNP [dm3] 2L_18295289_SNP [dm6]	C	T	3.780e^-5	0.943	SYNONYMOUS_CODING CG5790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	3.811e^-5	0.943	DOWNSTREAM inv INTERGENIC
X	2346939	X_2346939_SNP [dm3] X_2452906_SNP [dm6]	C	T	3.831e^-5	0.943	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	3.863e^-5	0.943	UTR_3_PRIME CG31030
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	4.025e^-5	0.943	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13656637	X_13656637_SNP [dm3] X_13762604_SNP [dm6]	T	G	4.097e^-5	0.943	UPSTREAM rdgB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	4.108e^-5	0.943	INTERGENIC
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	4.130e^-5	0.943	INTRON CG6154
X	16100724	X_16100724_SNP [dm3] X_16206691_SNP [dm6]	A	G	4.177e^-5	0.943	INTERGENIC
2R	19645313	2R_19645313_SNP [dm3] 2R_23757790_SNP [dm6]	G	T	4.179e^-5	0.943	SYNONYMOUS_CODING CG9850
2L	16573588	2L_16573588_SNP [dm3] 2L_16573588_SNP [dm6]	G	T	4.222e^-5	0.943	INTRON CG42389
2R	19278549	2R_19278549_SNP [dm3] 2R_23391026_SNP [dm6]	G	A	4.298e^-5	0.943	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18033646	2R_18033646_SNP [dm3] 2R_22146141_SNP [dm6]	C	T	4.341e^-5	0.943	INTRON a
2R	18039551	2R_18039551_SNP [dm3] 2R_22152046_SNP [dm6]	G	T	4.349e^-5	0.943	INTRON a
3R	25927653	3R_25927653_SNP [dm3] 3R_30101931_SNP [dm6]	T	A	4.358e^-5	0.943	INTRON sima
2L	6237862	2L_6237862_SNP [dm3] 2L_6237862_SNP [dm6]	G	A	4.374e^-5	0.943	INTERGENIC
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	4.426e^-5	0.943	UTR_3_PRIME Sema-2a
2R	19619527	2R_19619527_SNP [dm3] 2R_23732004_SNP [dm6]	G	C	4.499e^-5	0.943	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	16381179	3R_16381179_SNP [dm3] 3R_20555457_SNP [dm6]	G	C	4.728e^-5	0.943	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5933544	2R_5933544_SNP [dm3] 2R_10046039_SNP [dm6]	T	C	4.881e^-5	0.943	DOWNSTREAM CR44295 INTRON oys
X	5223597	X_5223597_SNP [dm3] X_5329564_SNP [dm6]	C	A	4.909e^-5	0.943	UPSTREAM XRCC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	4.989e^-5	0.943	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	4.992e^-5	0.943	INTRON bbg
3R	25427007	3R_25427007_SNP [dm3] 3R_29601285_SNP [dm6]	G	A	5.046e^-5	0.943	UPSTREAM CG7568 INTRON alph
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	5.137e^-5	0.943	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	8703259	2L_8703259_SNP [dm3] 2L_8703259_SNP [dm6]	C	T	5.196e^-5	0.943	UPSTREAM CR44992 INTRON Hnf4
2L	8702563	2L_8702563_SNP [dm3] 2L_8702563_SNP [dm6]	T	A	5.216e^-5	0.943	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	5.311e^-5	0.943	INTERGENIC	TF binding site mE1_TFBS_sens
3R	26008311	3R_26008311_SNP [dm3] 3R_30182589_SNP [dm6]	G	A	5.320e^-5	0.943	INTERGENIC
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	5.331e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6333767	X_6333767_SNP [dm3] X_6439734_SNP [dm6]	C	T	5.346e^-5	0.943	INTRON CG42340
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	5.350e^-5	0.943	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26014969	3R_26014969_SNP [dm3] 3R_30189247_SNP [dm6]	A	T	5.354e^-5	0.943	INTRON CG9747
3R	26001353	3R_26001353_SNP [dm3] 3R_30175631_SNP [dm6]	C	A	5.356e^-5	0.943	DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
X	6333686	X_6333686_SNP [dm3] X_6439653_SNP [dm6]	C	T	5.395e^-5	0.943	INTRON CG42340
3R	21189046	3R_21189046_SNP [dm3] 3R_25363324_SNP [dm6]	T	C	5.470e^-5	0.943	INTRON Fur1
2L	7341713	2L_7341713_SNP [dm3] 2L_7341713_SNP [dm6]	A	T	5.533e^-5	0.943	INTRON Wnt6
3R	25427021	3R_25427021_SNP [dm3] 3R_29601299_SNP [dm6]	C	T	5.534e^-5	0.943	UPSTREAM CG7568 INTRON alph
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	5.594e^-5	0.943	INTRON CG32365
2L	7341740	2L_7341740_SNP [dm3] 2L_7341740_SNP [dm6]	C	T	5.627e^-5	0.943	INTRON Wnt6
3R	24777298	3R_24777298_SNP [dm3] 3R_28951576_SNP [dm6]	C	T	5.638e^-5	0.943	INTRON CG14521
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	5.668e^-5	0.943	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	17348585	2R_17348585_DEL [dm3] 2R_21461080_DEL [dm6]	AA	A	5.729e^-5	0.943	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	5.739e^-5	0.943	INTRON bnl
3L	922601	3L_922601_SNP [dm3] 3L_922601_SNP [dm6]	C	T	5.784e^-5	0.943	INTRON Glut1
2R	17503358	2R_17503358_SNP [dm3] 2R_21615853_SNP [dm6]	T	C	5.902e^-5	0.95	SYNONYMOUS_CODING CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19277488	2R_19277488_SNP [dm3] 2R_23389965_SNP [dm6]	A	T	5.978e^-5	0.95	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	5.986e^-5	0.95	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	6.074e^-5	0.95	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	8702038	2L_8702038_SNP [dm3] 2L_8702038_SNP [dm6]	G	A	6.154e^-5	0.95	INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8702813	2L_8702813_SNP [dm3] 2L_8702813_SNP [dm6]	A	C	6.154e^-5	0.95	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	6.413e^-5	0.95	DOWNSTREAM CG14089 INTRON CG14086
2L	18294858	2L_18294858_SNP [dm3] 2L_18294858_SNP [dm6]	G	T	6.438e^-5	0.95	UTR_5_PRIME CG5790 UPSTREAM CR43358	TF binding site mE1_TFBS_inv
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	6.460e^-5	0.95	DOWNSTREAM CG17199 INTRON Nlg4
3R	22281144	3R_22281144_SNP [dm3] 3R_26455422_SNP [dm6]	C	G	6.523e^-5	0.95	DOWNSTREAM Pdf & 2 others INTERGENIC
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	6.528e^-5	0.95	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	6.528e^-5	0.95	INTRON CG15465 & 1 other
3R	9896415	3R_9896415_INS [dm3] 3R_14070693_INS [dm6]	A	AATTCA	6.533e^-5	0.95	INTRON foxo
3R	26008294	3R_26008294_SNP [dm3] 3R_30182572_SNP [dm6]	T	G	6.549e^-5	0.95	INTERGENIC
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	6.589e^-5	0.95	INTRON psq
2L	20319073	2L_20319073_SNP [dm3] 2L_20319073_SNP [dm6]	C	G	6.844e^-5	0.96	INTRON spir
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	6.982e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	2346945	X_2346945_SNP [dm3] X_2452912_SNP [dm6]	T	G	6.987e^-5	0.96	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	14713575	3R_14713575_SNP [dm3] 3R_18887853_SNP [dm6]	C	T	7.044e^-5	0.96	INTERGENIC
3R	22281126	3R_22281126_SNP [dm3] 3R_26455404_SNP [dm6]	A	G	7.111e^-5	0.96	DOWNSTREAM Pdf & 2 others INTERGENIC
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	7.202e^-5	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	7.294e^-5	0.96	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	712537	2L_712537_SNP [dm3] 2L_712537_SNP [dm6]	C	A	7.322e^-5	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	7.328e^-5	0.96	INTRON dpr3
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	7.347e^-5	0.96	INTRON a
3L	893221	3L_893221_SNP [dm3] 3L_893221_SNP [dm6]	T	A	7.647e^-5	0.96	UTR_3_PRIME CG32479
4	469871	4_469871_SNP [dm3] 4_449245_SNP [dm6]	C	T	7.664e^-5	0.96	INTRON CaMKI	transposable element FlyBase
2R	2324944	2R_2324944_DEL [dm3] 2R_6437439_DEL [dm6]	GAC	G	7.677e^-5	0.96	INTERGENIC
3R	14608265	3R_14608265_SNP [dm3] 3R_18782543_SNP [dm6]	T	G	7.735e^-5	0.96	INTRON CG7720
3L	19039984	3L_19039984_SNP [dm3] 3L_19046884_SNP [dm6]	T	G	8.004e^-5	0.96	INTERGENIC
X	16100736	X_16100736_SNP [dm3] X_16206703_SNP [dm6]	C	T	8.052e^-5	0.96	INTERGENIC
2L	1951152	2L_1951152_SNP [dm3] 2L_1951152_SNP [dm6]	G	A	8.076e^-5	0.96	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26001227	3R_26001227_SNP [dm3] 3R_30175505_SNP [dm6]	G	A	8.093e^-5	0.96	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	8.145e^-5	0.96	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22901000	3R_22901000_SNP [dm3] 3R_27075278_SNP [dm6]	A	T	8.170e^-5	0.96	UPSTREAM CG14257 INTERGENIC
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	8.218e^-5	0.96	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10014496	X_10014496_SNP [dm3] X_10120463_SNP [dm6]	C	A	8.239e^-5	0.96	INTRON RhoU & 1 other
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	8.283e^-5	0.96	INTRON Sh
3R	14910846	3R_14910846_SNP [dm3] 3R_19085124_SNP [dm6]	A	G	8.302e^-5	0.96	INTRON cdi
2L	8702564	2L_8702564_SNP [dm3] 2L_8702564_SNP [dm6]	A	T	8.302e^-5	0.96	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc
2L	1885844	2L_1885844_SNP [dm3] 2L_1885844_SNP [dm6]	C	T	8.519e^-5	0.96	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	8.617e^-5	0.96	DOWNSTREAM CG8086 & 1 other INTRON CG43057
2R	17180762	2R_17180762_SNP [dm3] 2R_21293257_SNP [dm6]	C	T	8.800e^-5	0.96	SYNONYMOUS_CODING Sgf29 UPSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	20092742	2R_20092742_SNP [dm3] 2R_24205219_SNP [dm6]	T	C	8.840e^-5	0.96	UTR_3_PRIME CG11406 INTRON CG11406
4	495786	4_495786_INS [dm3] 4_475160_INS [dm6]	T	TT	8.848e^-5	0.96	INTRON Asator
3R	24936038	3R_24936038_SNP [dm3] 3R_29110316_SNP [dm6]	G	A	8.864e^-5	0.96	SYNONYMOUS_CODING alpha-Man-Ib
2L	6953894	2L_6953894_SNP [dm3] 2L_6953894_SNP [dm6]	T	C	8.872e^-5	0.96	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	8.886e^-5	0.96	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	8.933e^-5	0.96	INTERGENIC
X	12290477	X_12290477_SNP [dm3] X_12396444_SNP [dm6]	C	A	8.933e^-5	0.96	INTERGENIC
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	8.992e^-5	0.96	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2L	712504	2L_712504_SNP [dm3] 2L_712504_SNP [dm6]	G	A	9.000e^-5	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	2346914	X_2346914_SNP [dm3] X_2452881_SNP [dm6]	A	C	9.109e^-5	0.96	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17504259	2R_17504259_SNP [dm3] 2R_21616754_SNP [dm6]	T	A	9.168e^-5	0.96	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	15370895	2L_15370895_SNP [dm3] 2L_15370895_SNP [dm6]	T	G	9.196e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7994516	3L_7994516_SNP [dm3] 3L_8001416_SNP [dm6]	C	A	9.319e^-5	0.96	INTRON nmo
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	9.427e^-5	0.96	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	9.427e^-5	0.96	INTRON mam	TF binding site BDTNP1_TFBS_dl
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	9.478e^-5	0.96	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16522079	2R_16522079_SNP [dm3] 2R_20634574_SNP [dm6]	C	A	9.513e^-5	0.96	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	16288477	2R_16288477_SNP [dm3] 2R_20400972_SNP [dm6]	A	G	9.588e^-5	0.96	INTERGENIC
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	9.599e^-5	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12689075	3R_12689075_SNP [dm3] 3R_16863353_SNP [dm6]	A	G	9.634e^-5	0.96	INTRON iab-8
3R	26928804	3R_26928804_SNP [dm3] 3R_31103082_SNP [dm6]	T	C	9.636e^-5	0.96	INTERGENIC
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	9.650e^-5	0.96	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11779661	2R_11779661_SNP [dm3] 2R_15892156_SNP [dm6]	A	G	9.735e^-5	0.96	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	9.766e^-5	0.96	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
X	9803259	X_9803259_SNP [dm3] X_9909226_SNP [dm6]	G	T	9.792e^-5	0.96	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	9.852e^-5	0.96	INTRON spg
2R	3873466	2R_3873466_SNP [dm3] 2R_7985961_SNP [dm6]	G	A	9.881e^-5	0.96	INTRON ACC
3R	17154780	3R_17154780_SNP [dm3] 3R_21329058_SNP [dm6]	G	C	9.971e^-5	0.96	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
2L	715934	2L_715934_SNP [dm3] 2L_715934_SNP [dm6]	A	C	1.001e^-4	0.96	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	1.002e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	1.009e^-4	0.96	INTRON HDAC4
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	1.019e^-4	0.96	INTERGENIC
X	22076954	X_22076954_SNP [dm3] X_22675118_SNP [dm6]	C	A	1.019e^-4	0.96	INTRON CR44997
3L	14930722	3L_14930722_SNP [dm3] 3L_14937622_SNP [dm6]	G	A	1.029e^-4	0.96	INTRON DCX-EMAP
2L	7536822	2L_7536822_SNP [dm3] 2L_7536822_SNP [dm6]	G	T	1.031e^-4	0.96	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2059331	2L_2059331_SNP [dm3] 2L_2059331_SNP [dm6]	T	A	1.035e^-4	0.96	UTR_3_PRIME dpr3
2L	6827198	2L_6827198_SNP [dm3] 2L_6827198_SNP [dm6]	G	C	1.039e^-4	0.96	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	1.054e^-4	0.96	SYNONYMOUS_CODING CG15210 INTRON sbr
3R	25437387	3R_25437387_SNP [dm3] 3R_29611665_SNP [dm6]	A	T	1.058e^-4	0.96	INTRON alph
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	1.064e^-4	0.96	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	1.075e^-4	0.96	UTR_5_PRIME TrissinR UPSTREAM TrissinR
X	1451150	X_1451150_SNP [dm3] X_1557117_SNP [dm6]	A	T	1.077e^-4	0.96	SYNONYMOUS_CODING Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	1.079e^-4	0.96	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	26928757	3R_26928757_SNP [dm3] 3R_31103035_SNP [dm6]	T	C	1.090e^-4	0.96	INTERGENIC
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	1.092e^-4	0.96	INTERGENIC
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	1.100e^-4	0.96	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	1.102e^-4	0.96	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7400069	2R_7400069_SNP [dm3] 2R_11512564_SNP [dm6]	G	C	1.105e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17504641	2R_17504641_SNP [dm3] 2R_21617136_SNP [dm6]	A	G	1.110e^-4	0.96	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	16207723	3R_16207723_SNP [dm3] 3R_20382001_SNP [dm6]	A	G	1.114e^-4	0.96	SYNONYMOUS_CODING Gfrl
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	1.118e^-4	0.96	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11574925	3R_11574925_SNP [dm3] 3R_15749203_SNP [dm6]	C	T	1.120e^-4	0.96	INTERGENIC
3L	7734162	3L_7734162_SNP [dm3] 3L_7741062_SNP [dm6]	C	T	1.136e^-4	0.96	INTRON CG32373 & 1 other
3R	21570682	3R_21570682_SNP [dm3] 3R_25744960_SNP [dm6]	C	A	1.137e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26009884	3R_26009884_SNP [dm3] 3R_30184162_SNP [dm6]	G	A	1.143e^-4	0.96	EXON CR44262
X	5490192	X_5490192_SNP [dm3] X_5596159_SNP [dm6]	T	C	1.155e^-4	0.96	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	1.163e^-4	0.96	SYNONYMOUS_CODING CG31321
3R	15622567	3R_15622567_SNP [dm3] 3R_19796845_SNP [dm6]	A	G	1.163e^-4	0.96	SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
X	20563824	X_20563824_SNP [dm3] X_20692797_SNP [dm6]	T	C	1.168e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	18343321	3R_18343321_SNP [dm3] 3R_22517599_SNP [dm6]	T	A	1.169e^-4	0.96	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	12796316	2R_12796316_SNP [dm3] 2R_16908811_SNP [dm6]	G	T	1.174e^-4	0.96	INTERGENIC
2R	12796431	2R_12796431_SNP [dm3] 2R_16908926_SNP [dm6]	T	A	1.174e^-4	0.96	INTERGENIC
2L	4199966	2L_4199966_SNP [dm3] 2L_4199966_SNP [dm6]	C	G	1.174e^-4	0.96	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9510912	3L_9510912_SNP [dm3] 3L_9517812_SNP [dm6]	T	A	1.183e^-4	0.96	INTRON CG33700
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	1.225e^-4	0.96	INTRON dlp	TF binding site BDTNP1_TFBS_dl
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	1.227e^-4	0.96	INTRON beat-VII
2L	8087849	2L_8087849_SNP [dm3] 2L_8087849_SNP [dm6]	A	G	1.228e^-4	0.96	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	1.230e^-4	0.96	INTRON dpr3
3R	16207603	3R_16207603_INS [dm3] 3R_20381881_INS [dm6]	A	AGCCCATAAGTTAA...	1.230e^-4	0.96	INTRON Gfrl
3R	16207631	3R_16207631_INS [dm3] 3R_20381909_INS [dm6]	T	TCAA	1.230e^-4	0.96	INTRON Gfrl
3R	22125750	3R_22125750_SNP [dm3] 3R_26300028_SNP [dm6]	C	T	1.248e^-4	0.96	INTERGENIC
X	5045284	X_5045284_SNP [dm3] X_5151251_SNP [dm6]	C	A	1.249e^-4	0.96	INTRON rg & 1 other
3R	24677362	3R_24677362_SNP [dm3] 3R_28851640_SNP [dm6]	T	C	1.251e^-4	0.96	INTRON spg
3R	24764078	3R_24764078_SNP [dm3] 3R_28938356_SNP [dm6]	C	T	1.255e^-4	0.96	INTRON CG14521
3L	19283686	3L_19283686_INS [dm3] 3L_19290586_INS [dm6]	T	TT	1.255e^-4	0.96	INTRON Gbs-76A
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	1.256e^-4	0.96	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
2L	5759821	2L_5759821_SNP [dm3] 2L_5759821_SNP [dm6]	A	T	1.258e^-4	0.96	UTR_3_PRIME CG11030
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	1.261e^-4	0.96	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	1.261e^-4	0.96	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	8501583	2R_8501583_INS [dm3] 2R_12614078_INS [dm6]	A	AG	1.261e^-4	0.96	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq
3R	22402628	3R_22402628_SNP [dm3] 3R_26576906_SNP [dm6]	C	T	1.264e^-4	0.96	UTR_3_PRIME scrib INTRON scrib
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	1.267e^-4	0.96	INTERGENIC
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	1.271e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	1.278e^-4	0.96	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.279e^-4	0.96	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12346499	2R_12346499_SNP [dm3] 2R_16458994_SNP [dm6]	C	T	1.290e^-4	0.96	INTERGENIC
2R	5933621	2R_5933621_SNP [dm3] 2R_10046116_SNP [dm6]	A	T	1.296e^-4	0.96	DOWNSTREAM CR44295 INTRON oys	TF binding site BDTNP1_TFBS_dl
2L	7341804	2L_7341804_SNP [dm3] 2L_7341804_SNP [dm6]	C	T	1.309e^-4	0.96	INTRON Wnt6
3R	16207630	3R_16207630_SNP [dm3] 3R_20381908_SNP [dm6]	C	T	1.316e^-4	0.96	INTRON Gfrl
3R	23475934	3R_23475934_SNP [dm3] 3R_27650212_SNP [dm6]	T	C	1.335e^-4	0.96	DOWNSTREAM tau INTRON tau
2R	15769024	2R_15769024_SNP [dm3] 2R_19881519_SNP [dm6]	T	G	1.336e^-4	0.96	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16720426	3L_16720426_SNP [dm3] 3L_16727326_SNP [dm6]	A	C	1.336e^-4	0.96	UTR_3_PRIME PGRP-SB1 DOWNSTREAM PGRP-SB2	TF binding site mE1_TFBS_cad
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	1.337e^-4	0.96	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8246678	2L_8246678_SNP [dm3] 2L_8246678_SNP [dm6]	T	C	1.347e^-4	0.96	SYNONYMOUS_CODING CG8086 INTRON CG8086
3R	26006362	3R_26006362_SNP [dm3] 3R_30180640_SNP [dm6]	C	A	1.349e^-4	0.96	SYNONYMOUS_CODING Bet5 DOWNSTREAM CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	13505961	2R_13505961_SNP [dm3] 2R_17618456_SNP [dm6]	C	T	1.359e^-4	0.96	UPSTREAM CG44403 INTRON CG10936
2L	712511	2L_712511_SNP [dm3] 2L_712511_SNP [dm6]	A	G	1.365e^-4	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	1.369e^-4	0.96	INTRON Sh
2L	19411953	2L_19411953_SNP [dm3] 2L_19411953_SNP [dm6]	A	T	1.370e^-4	0.96	UPSTREAM Pax INTRON Pax
2L	8657873	2L_8657873_SNP [dm3] 2L_8657873_SNP [dm6]	T	C	1.375e^-4	0.96	INTRON Sema-1a
3L	24502653	3L_24502653_SNP [dm3] 3L_24509553_SNP [dm6]	T	C	1.387e^-4	0.96	INTERGENIC
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	1.393e^-4	0.96	INTRON Ten-a
2L	11490612	2L_11490612_SNP [dm3] 2L_11490612_SNP [dm6]	C	A	1.408e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	1.421e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	14228649	3R_14228649_SNP [dm3] 3R_18402927_SNP [dm6]	G	A	1.421e^-4	0.96	UPSTREAM koko & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	8525649	X_8525649_SNP [dm3] X_8631616_SNP [dm6]	C	T	1.424e^-4	0.96	UTR_3_PRIME oc
3L	13031129	3L_13031129_SNP [dm3] 3L_13038029_SNP [dm6]	C	G	1.430e^-4	0.96	SYNONYMOUS_CODING SRm160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	26009192	3R_26009192_SNP [dm3] 3R_30183470_SNP [dm6]	T	C	1.446e^-4	0.96	DOWNSTREAM CR44262 INTERGENIC
3R	26008427	3R_26008427_SNP [dm3] 3R_30182705_SNP [dm6]	C	G	1.451e^-4	0.96	INTERGENIC
2L	10368919	2L_10368919_SNP [dm3] 2L_10368919_SNP [dm6]	G	T	1.455e^-4	0.96	DOWNSTREAM CG5056 INTRON rho-5	TF binding site mE1_TFBS_cad
3R	4422972	3R_4422972_SNP [dm3] 3R_8597250_SNP [dm6]	C	T	1.465e^-4	0.96	INTRON 5-HT2B
3R	15622019	3R_15622019_SNP [dm3] 3R_19796297_SNP [dm6]	T	C	1.475e^-4	0.96	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10822766	2L_10822766_SNP [dm3] 2L_10822766_SNP [dm6]	C	A	1.478e^-4	0.96	DOWNSTREAM CG17134 INTRON Nos
3R	25427027	3R_25427027_SNP [dm3] 3R_29601305_SNP [dm6]	C	T	1.494e^-4	0.96	UPSTREAM CG7568 INTRON alph
2L	12721577	2L_12721577_SNP [dm3] 2L_12721577_SNP [dm6]	T	G	1.501e^-4	0.96	UPSTREAM MRP INTRON MRP & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	1.505e^-4	0.96	UPSTREAM CG44476 INTERGENIC
X	9803201	X_9803201_SNP [dm3] X_9909168_SNP [dm6]	A	T	1.510e^-4	0.96	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	7886421	3L_7886421_SNP [dm3] 3L_7893321_SNP [dm6]	G	A	1.515e^-4	0.96	SYNONYMOUS_CODING CG32365
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	1.517e^-4	0.96	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	4261680	3R_4261680_SNP [dm3] 3R_8435958_SNP [dm6]	C	G	1.518e^-4	0.96	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8551531	2R_8551531_SNP [dm3] 2R_12664026_SNP [dm6]	A	T	1.521e^-4	0.96	INTRON nemy
3R	26012430	3R_26012430_SNP [dm3] 3R_30186708_SNP [dm6]	T	C	1.546e^-4	0.96	SYNONYMOUS_CODING CG9747	TF binding site mE1_TFBS_inv
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	1.548e^-4	0.96	INTERGENIC
2L	12966235	2L_12966235_INS [dm3] 2L_12966235_INS [dm6]	A	AA	1.553e^-4	0.96	UPSTREAM CG16800 INTERGENIC
2L	8658073	2L_8658073_SNP [dm3] 2L_8658073_SNP [dm6]	T	C	1.559e^-4	0.96	INTRON Sema-1a
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	1.559e^-4	0.96	DOWNSTREAM CG9173 INTRON Ptp61F
3R	19243318	3R_19243318_SNP [dm3] 3R_23417596_SNP [dm6]	T	C	1.562e^-4	0.96	INTRON CG4374	TF binding site mE1_TFBS_chinmo
3R	15081550	3R_15081550_SNP [dm3] 3R_19255828_SNP [dm6]	T	C	1.565e^-4	0.96	UPSTREAM CG14280 INTERGENIC
3L	7885918	3L_7885918_DEL [dm3] 3L_7892818_DEL [dm6]	AA	A	1.566e^-4	0.96	INTRON CG32365
2R	8759074	2R_8759074_SNP [dm3] 2R_12871569_SNP [dm6]	A	G	1.567e^-4	0.96	UTR_3_PRIME bic DOWNSTREAM bic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16894862	3R_16894862_SNP [dm3] 3R_21069140_SNP [dm6]	T	C	1.567e^-4	0.96	INTRON AnxB9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2567894	X_2567894_SNP [dm3] X_2673861_SNP [dm6]	C	A	1.570e^-4	0.96	INTRON sgg
2R	19403911	2R_19403911_SNP [dm3] 2R_23516388_SNP [dm6]	C	T	1.572e^-4	0.96	INTERGENIC
3L	11698588	3L_11698588_SNP [dm3] 3L_11705488_SNP [dm6]	G	C	1.581e^-4	0.96	INTRON CG11658
4	439136	4_439136_SNP [dm3] 4_418510_SNP [dm6]	C	T	1.583e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7861473	3L_7861473_SNP [dm3] 3L_7868373_SNP [dm6]	T	G	1.586e^-4	0.96	UPSTREAM CG32365 INTERGENIC
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	1.590e^-4	0.96	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3172785	2L_3172785_SNP [dm3] 2L_3172785_SNP [dm6]	A	G	1.602e^-4	0.96	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	1.607e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	1.621e^-4	0.96	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	1.632e^-4	0.96	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	10576547	3R_10576547_SNP [dm3] 3R_14750825_SNP [dm6]	G	A	1.649e^-4	0.96	DOWNSTREAM CG7362 INTRON jvl & 1 other
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	1.657e^-4	0.96	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	26008485	3R_26008485_SNP [dm3] 3R_30182763_SNP [dm6]	T	A	1.658e^-4	0.96	INTERGENIC
3R	22901013	3R_22901013_SNP [dm3] 3R_27075291_SNP [dm6]	T	A	1.667e^-4	0.96	UPSTREAM CG14257 INTERGENIC
X	1453833	X_1453833_SNP [dm3] X_1559800_SNP [dm6]	A	G	1.670e^-4	0.96	INTRON Mur2B
3R	16004533	3R_16004533_SNP [dm3] 3R_20178811_SNP [dm6]	A	C	1.677e^-4	0.96	INTERGENIC
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	1.679e^-4	0.96	INTRON spir
X	20563794	X_20563794_SNP [dm3] X_20692767_SNP [dm6]	A	G	1.683e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	14082999	X_14082999_SNP [dm3] X_14188966_SNP [dm6]	C	T	1.696e^-4	0.96	UPSTREAM CG11585 INTERGENIC
3R	26013975	3R_26013975_SNP [dm3] 3R_30188253_SNP [dm6]	G	C	1.710e^-4	0.96	INTRON CG9747
3R	26753407	3R_26753407_DEL [dm3] 3R_30927685_DEL [dm6]	TT	T	1.718e^-4	0.96	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2567945	X_2567945_SNP [dm3] X_2673912_SNP [dm6]	T	A	1.724e^-4	0.96	NON_SYNONYMOUS_CODING sgg INTRON sgg
2L	7848509	2L_7848509_SNP [dm3] 2L_7848509_SNP [dm6]	T	G	1.728e^-4	0.96	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2L	16712287	2L_16712287_SNP [dm3] 2L_16712287_SNP [dm6]	G	A	1.739e^-4	0.96	INTRON CG31808
X	4980605	X_4980605_SNP [dm3] X_5086572_SNP [dm6]	T	C	1.742e^-4	0.96	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	5868148	2R_5868148_SNP [dm3] 2R_9980643_SNP [dm6]	C	A	1.762e^-4	0.96	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22076525	X_22076525_SNP [dm3] X_22674689_SNP [dm6]	C	G	1.762e^-4	0.96	INTRON CR44997
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	1.767e^-4	0.96	DOWNSTREAM CG33460 INTRON CG33461
2L	15370909	2L_15370909_SNP [dm3] 2L_15370909_SNP [dm6]	C	A	1.772e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12470453	2L_12470453_SNP [dm3] 2L_12470453_SNP [dm6]	A	C	1.773e^-4	0.96	INTRON bun
X	19782474	X_19782474_SNP [dm3] X_19888441_SNP [dm6]	C	T	1.780e^-4	0.96	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5982222	3L_5982222_SNP [dm3] 3L_5989122_SNP [dm6]	C	T	1.781e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_sens
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	1.790e^-4	0.96	INTRON Ten-a
X	6716855	X_6716855_SNP [dm3] X_6822822_SNP [dm6]	C	G	1.792e^-4	0.96	UTR_3_PRIME CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.793e^-4	0.96	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
2L	7199592	2L_7199592_SNP [dm3] 2L_7199592_SNP [dm6]	C	T	1.802e^-4	0.96	INTRON CG4502
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	1.803e^-4	0.96	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	26928847	3R_26928847_SNP [dm3] 3R_31103125_SNP [dm6]	G	A	1.804e^-4	0.96	INTERGENIC
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	1.814e^-4	0.96	INTERGENIC
X	1453712	X_1453712_SNP [dm3] X_1559679_SNP [dm6]	A	G	1.815e^-4	0.96	INTRON Mur2B
X	10014440	X_10014440_SNP [dm3] X_10120407_SNP [dm6]	T	C	1.817e^-4	0.96	INTRON RhoU & 1 other
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	1.818e^-4	0.96	INTRON CG9850
2R	11594100	2R_11594100_SNP [dm3] 2R_15706595_SNP [dm6]	G	A	1.834e^-4	0.96	INTERGENIC
3R	24776731	3R_24776731_DEL [dm3] 3R_28951009_DEL [dm6]	GA	G	1.836e^-4	0.96	INTRON CG14521
2R	7103524	2R_7103524_SNP [dm3] 2R_11216019_SNP [dm6]	G	A	1.840e^-4	0.96	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	1.842e^-4	0.96	INTRON a
2R	7804811	2R_7804811_SNP [dm3] 2R_11917306_SNP [dm6]	A	G	1.856e^-4	0.96	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	1.860e^-4	0.96	INTERGENIC
2R	7837538	2R_7837538_SNP [dm3] 2R_11950033_SNP [dm6]	C	T	1.862e^-4	0.96	INTRON CG13188
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	1.863e^-4	0.96	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	1.870e^-4	0.96	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17786082	2R_17786082_SNP [dm3] 2R_21898577_SNP [dm6]	G	A	1.870e^-4	0.96	INTRON Fili
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	1.884e^-4	0.96	INTRON CG10249	TF binding site mE1_TFBS_cnc
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	1.884e^-4	0.96	INTRON CG14521
2L	9011461	2L_9011461_DEL [dm3] 2L_9011461_DEL [dm6]	ACGC	TA	1.894e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	12467848	2L_12467848_SNP [dm3] 2L_12467848_SNP [dm6]	C	T	1.898e^-4	0.96	INTRON bun	TF binding site mE1_TFBS_kn
2L	16200626	2L_16200626_SNP [dm3] 2L_16200626_SNP [dm6]	T	C	1.901e^-4	0.96	INTERGENIC
X	15999675	X_15999675_INS [dm3] X_16105642_INS [dm6]	T	TTA	1.905e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	1.913e^-4	0.96	INTRON stan
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	1.916e^-4	0.96	INTRON bbg
3R	6811200	3R_6811200_SNP [dm3] 3R_10985478_SNP [dm6]	G	T	1.927e^-4	0.96	INTRON CG34114
2L	18141904	2L_18141904_SNP [dm3] 2L_18141904_SNP [dm6]	G	A	1.930e^-4	0.96	SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17503406	2R_17503406_SNP [dm3] 2R_21615901_SNP [dm6]	A	G	1.930e^-4	0.96	SYNONYMOUS_CODING CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	1.946e^-4	0.96	DOWNSTREAM mbl INTRON mbl
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	1.948e^-4	0.96	INTERGENIC
2L	3755353	2L_3755353_SNP [dm3] 2L_3755353_SNP [dm6]	A	G	1.948e^-4	0.96	DOWNSTREAM CG10019 INTERGENIC
3R	25823013	3R_25823013_SNP [dm3] 3R_29997291_SNP [dm6]	T	G	1.949e^-4	0.96	SYNONYMOUS_CODING CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.950e^-4	0.96	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	1453233	X_1453233_SNP [dm3] X_1559200_SNP [dm6]	A	T	1.953e^-4	0.96	UPSTREAM snmRNA:400 INTRON Mur2B
2R	17095925	2R_17095925_SNP [dm3] 2R_21208420_SNP [dm6]	C	T	1.963e^-4	0.96	INTRON CG44245 & 1 other
2R	7801504	2R_7801504_SNP [dm3] 2R_11913999_SNP [dm6]	T	C	1.967e^-4	0.96	INTERGENIC
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	1.968e^-4	0.96	INTRON blow	TF binding site mE1_TFBS_chinmo
2L	6132604	2L_6132604_SNP [dm3] 2L_6132604_SNP [dm6]	C	T	1.969e^-4	0.96	DOWNSTREAM CR45719 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	15999457	X_15999457_SNP [dm3] X_16105424_SNP [dm6]	A	G	1.970e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	2675315	2L_2675315_DEL [dm3] 2L_2675315_DEL [dm6]	GGA	G	1.984e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad
4	495389	4_495389_SNP [dm3] 4_474763_SNP [dm6]	A	G	1.995e^-4	0.96	SYNONYMOUS_CODING Asator UTR_3_PRIME Asator
3L	19288938	3L_19288938_SNP [dm3] 3L_19295838_SNP [dm6]	C	A	2.006e^-4	0.96	INTRON fal	TF binding site BDTNP1_TFBS_dl
X	16100697	X_16100697_SNP [dm3] X_16206664_SNP [dm6]	C	T	2.009e^-4	0.96	INTERGENIC
2R	19144249	2R_19144249_SNP [dm3] 2R_23256726_SNP [dm6]	T	C	2.017e^-4	0.96	INTERGENIC
3R	18347069	3R_18347069_SNP [dm3] 3R_22521347_SNP [dm6]	G	A	2.017e^-4	0.96	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6953049	2L_6953049_SNP [dm3] 2L_6953049_SNP [dm6]	T	C	2.027e^-4	0.96	SYNONYMOUS_CODING SA
3R	19356833	3R_19356833_SNP [dm3] 3R_23531111_SNP [dm6]	T	G	2.029e^-4	0.96	UPSTREAM CG10175 INTERGENIC
3R	24922671	3R_24922671_SNP [dm3] 3R_29096949_SNP [dm6]	T	G	2.041e^-4	0.96	DOWNSTREAM CR45030 INTRON CG11873
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	2.054e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
4	430836	4_430836_SNP [dm3] 4_410210_SNP [dm6]	A	T	2.058e^-4	0.96	INTERGENIC
2L	3631296	2L_3631296_SNP [dm3] 2L_3631296_SNP [dm6]	A	T	2.062e^-4	0.96	INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	15175536	3R_15175536_SNP [dm3] 3R_19349814_SNP [dm6]	A	G	2.069e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	9921548	X_9921548_SNP [dm3] X_10027515_SNP [dm6]	A	T	2.074e^-4	0.96	INTRON Cht6
2R	9791388	2R_9791388_SNP [dm3] 2R_13903883_SNP [dm6]	C	T	2.076e^-4	0.96	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25990574	3R_25990574_SNP [dm3] 3R_30164852_SNP [dm6]	C	T	2.077e^-4	0.96	UTR_3_PRIME CG31030
2R	9442529	2R_9442529_SNP [dm3] 2R_13555024_SNP [dm6]	C	T	2.089e^-4	0.96	UPSTREAM link INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	7746068	2L_7746068_SNP [dm3] 2L_7746068_SNP [dm6]	T	A	2.092e^-4	0.96	INTERGENIC
2L	20721538	2L_20721538_INS [dm3] 2L_20721538_INS [dm6]	C	CGC	2.094e^-4	0.96	UPSTREAM CR45306 INTERGENIC
3L	12235202	3L_12235202_SNP [dm3] 3L_12242102_SNP [dm6]	A	T	2.095e^-4	0.96	INTRON app
2L	9011468	2L_9011468_SNP [dm3] 2L_9011468_SNP [dm6]	A	T	2.102e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	19016396	3L_19016396_SNP [dm3] 3L_19023296_SNP [dm6]	C	A	2.113e^-4	0.96	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	20877492	3L_20877492_SNP [dm3] 3L_20884392_SNP [dm6]	T	A	2.119e^-4	0.96	INTRON CG32432
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	2.136e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19181153	2R_19181153_SNP [dm3] 2R_23293630_SNP [dm6]	C	T	2.145e^-4	0.96	INTERGENIC
X	1453785	X_1453785_INS [dm3] X_1559752_INS [dm6]	T	TTTGATATACAAAGAGCT...	2.149e^-4	0.96	INTRON Mur2B
2L	18425559	2L_18425559_SNP [dm3] 2L_18425559_SNP [dm6]	G	T	2.152e^-4	0.96	INTERGENIC
2R	10829747	2R_10829747_SNP [dm3] 2R_14942242_SNP [dm6]	G	T	2.168e^-4	0.96	UPSTREAM CG10257 INTERGENIC
2R	7402091	2R_7402091_SNP [dm3] 2R_11514586_SNP [dm6]	C	T	2.174e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_bcd
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	2.176e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	2.176e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	2.176e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	2.176e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9814399	2R_9814399_SNP [dm3] 2R_13926894_SNP [dm6]	C	T	2.177e^-4	0.96	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	23475953	3R_23475953_SNP [dm3] 3R_27650231_SNP [dm6]	T	C	2.193e^-4	0.96	DOWNSTREAM tau INTRON tau
3R	26927768	3R_26927768_SNP [dm3] 3R_31102046_SNP [dm6]	C	T	2.194e^-4	0.96	UPSTREAM CG15553 INTERGENIC
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	2.199e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	2.202e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	2.202e^-4	0.96	SYNONYMOUS_CODING S-Lap2
2L	7536857	2L_7536857_SNP [dm3] 2L_7536857_SNP [dm6]	G	A	2.203e^-4	0.96	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1454151	3L_1454151_SNP [dm3] 3L_1454151_SNP [dm6]	A	G	2.203e^-4	0.96	INTRON Ptp61F
4	404139	4_404139_SNP [dm3] 4_383513_SNP [dm6]	C	G	2.215e^-4	0.96	INTRON Lin29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2L	12415255	2L_12415255_SNP [dm3] 2L_12415255_SNP [dm6]	A	T	2.217e^-4	0.96	INTRON vir-1
2L	9149896	2L_9149896_SNP [dm3] 2L_9149896_SNP [dm6]	C	T	2.229e^-4	0.96	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	2.233e^-4	0.96	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2L	19929144	2L_19929144_SNP [dm3] 2L_19929144_SNP [dm6]	T	C	2.235e^-4	0.96	INTRON sick
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	2.249e^-4	0.96	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	19278570	2R_19278570_SNP [dm3] 2R_23391047_SNP [dm6]	G	A	2.251e^-4	0.96	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18423949	2L_18423949_SNP [dm3] 2L_18423949_SNP [dm6]	G	A	2.255e^-4	0.96	INTERGENIC
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	2.258e^-4	0.96	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	2.262e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_inv
X	10014508	X_10014508_SNP [dm3] X_10120475_SNP [dm6]	G	T	2.265e^-4	0.96	INTRON RhoU & 1 other
2L	4763847	2L_4763847_SNP [dm3] 2L_4763847_SNP [dm6]	G	A	2.266e^-4	0.96	UTR_3_PRIME CG42523 DOWNSTREAM CG42523 INTRON CG15630
2R	7421314	2R_7421314_SNP [dm3] 2R_11533809_SNP [dm6]	T	G	2.267e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13113814	2L_13113814_SNP [dm3] 2L_13113814_SNP [dm6]	T	A	2.272e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	7421319	2R_7421319_SNP [dm3] 2R_11533814_SNP [dm6]	C	A	2.280e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7421320	2R_7421320_SNP [dm3] 2R_11533815_SNP [dm6]	A	G	2.280e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7421327	2R_7421327_SNP [dm3] 2R_11533822_SNP [dm6]	G	C	2.280e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20225393	2R_20225393_SNP [dm3] 2R_24337870_SNP [dm6]	A	T	2.280e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	10068219	X_10068219_SNP [dm3] X_10174186_SNP [dm6]	T	C	2.283e^-4	0.96	INTRON CG43902 & 1 other
4	414609	4_414609_SNP [dm3] 4_393983_SNP [dm6]	T	C	2.284e^-4	0.96	UTR_5_PRIME Lin29 UPSTREAM Lin29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7798461	2R_7798461_SNP [dm3] 2R_11910956_SNP [dm6]	A	T	2.286e^-4	0.96	INTRON CG13183
3L	17504396	3L_17504396_SNP [dm3] 3L_17511296_SNP [dm6]	C	A	2.291e^-4	0.96	UTR_3_PRIME Oatp74D DOWNSTREAM U4-U6-60K	TF binding site mE1_TFBS_HSA
3L	17504397	3L_17504397_SNP [dm3] 3L_17511297_SNP [dm6]	C	A	2.291e^-4	0.96	UTR_3_PRIME Oatp74D DOWNSTREAM U4-U6-60K	TF binding site mE1_TFBS_HSA
3L	11853204	3L_11853204_SNP [dm3] 3L_11860104_SNP [dm6]	A	C	2.298e^-4	0.96	INTRON CG44837
3R	24824359	3R_24824359_SNP [dm3] 3R_28998637_SNP [dm6]	A	T	2.320e^-4	0.96	INTRON wat
2L	7536173	2L_7536173_SNP [dm3] 2L_7536173_SNP [dm6]	T	C	2.338e^-4	0.96	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7536177	2L_7536177_SNP [dm3] 2L_7536177_SNP [dm6]	G	A	2.338e^-4	0.96	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	2.345e^-4	0.96	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2L	4643969	2L_4643969_SNP [dm3] 2L_4643969_SNP [dm6]	A	T	2.355e^-4	0.96	NON_SYNONYMOUS_CODING CG15635
X	15999693	X_15999693_SNP [dm3] X_16105660_SNP [dm6]	A	T	2.359e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	8342949	2R_8342949_SNP [dm3] 2R_12455444_SNP [dm6]	G	T	2.363e^-4	0.96	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13040861	3L_13040861_SNP [dm3] 3L_13047761_SNP [dm6]	T	C	2.364e^-4	0.96	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18425491	2L_18425491_SNP [dm3] 2L_18425491_SNP [dm6]	G	C	2.374e^-4	0.96	INTERGENIC
2R	7421309	2R_7421309_SNP [dm3] 2R_11533804_SNP [dm6]	A	G	2.388e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
X	4288560	X_4288560_SNP [dm3] X_4394527_SNP [dm6]	G	C	2.402e^-4	0.96	UPSTREAM CR32773 INTRON CR32773
2R	1490812	2R_1490812_SNP [dm3] 2R_5603307_SNP [dm6]	C	A	2.412e^-4	0.96	DOWNSTREAM Fis1 INTERGENIC
3R	25548762	3R_25548762_SNP [dm3] 3R_29723040_SNP [dm6]	A	C	2.428e^-4	0.96	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	14906477	2R_14906477_SNP [dm3] 2R_19018972_SNP [dm6]	A	C	2.428e^-4	0.96	INTERGENIC
2L	9011456	2L_9011456_SNP [dm3] 2L_9011456_SNP [dm6]	T	A	2.443e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
3L	16494844	3L_16494844_SNP [dm3] 3L_16501744_SNP [dm6]	G	A	2.456e^-4	0.96	DOWNSTREAM CG43373 INTRON CG43373
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	2.464e^-4	0.96	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9814393	2R_9814393_SNP [dm3] 2R_13926888_SNP [dm6]	C	A	2.465e^-4	0.96	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	2.466e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	2.477e^-4	0.96	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	2.492e^-4	0.96	DOWNSTREAM CG5556 INTERGENIC
3R	21570593	3R_21570593_SNP [dm3] 3R_25744871_SNP [dm6]	T	C	2.502e^-4	0.96	SYNONYMOUS_CODING LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570607	3R_21570607_SNP [dm3] 3R_25744885_SNP [dm6]	G	A	2.502e^-4	0.96	SPLICE_SITE_REGION LpR1 INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570618	3R_21570618_SNP [dm3] 3R_25744896_SNP [dm6]	T	A	2.502e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570624	3R_21570624_SNP [dm3] 3R_25744902_SNP [dm6]	T	A	2.502e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570628	3R_21570628_SNP [dm3] 3R_25744906_SNP [dm6]	T	A	2.502e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570689	3R_21570689_SNP [dm3] 3R_25744967_SNP [dm6]	C	T	2.502e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	21570693	3R_21570693_SNP [dm3] 3R_25744971_SNP [dm6]	G	A	2.502e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	1453165	X_1453165_SNP [dm3] X_1559132_SNP [dm6]	A	T	2.524e^-4	0.96	UPSTREAM snmRNA:400 INTRON Mur2B
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	2.527e^-4	0.96	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3R	14969788	3R_14969788_DEL [dm3] 3R_19144066_DEL [dm6]	GAACG	G	2.545e^-4	0.96	INTRON Ppcs
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	2.552e^-4	0.96	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25739953	3R_25739953_SNP [dm3] 3R_29914231_SNP [dm6]	A	G	2.556e^-4	0.96	SYNONYMOUS_CODING Capa DOWNSTREAM trp
3R	16381123	3R_16381123_SNP [dm3] 3R_20555401_SNP [dm6]	C	T	2.562e^-4	0.96	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	2.569e^-4	0.96	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	16522034	2R_16522034_SNP [dm3] 2R_20634529_SNP [dm6]	A	G	2.574e^-4	0.96	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	16522052	2R_16522052_SNP [dm3] 2R_20634547_SNP [dm6]	C	T	2.574e^-4	0.96	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
X	10014177	X_10014177_SNP [dm3] X_10120144_SNP [dm6]	G	T	2.581e^-4	0.96	INTRON RhoU & 1 other
3R	4419417	3R_4419417_SNP [dm3] 3R_8593695_SNP [dm6]	C	A	2.582e^-4	0.96	INTRON 5-HT2B
2L	12147093	2L_12147093_SNP [dm3] 2L_12147093_SNP [dm6]	G	A	2.594e^-4	0.96	INTRON CG31760
3L	19288194	3L_19288194_SNP [dm3] 3L_19295094_SNP [dm6]	C	T	2.597e^-4	0.96	UTR_5_PRIME fal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3R	22446161	3R_22446161_DEL [dm3] 3R_26620439_DEL [dm6]	ATC	T	2.598e^-4	0.96	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24746746	3R_24746746_SNP [dm3] 3R_28921024_SNP [dm6]	T	C	2.606e^-4	0.96	SYNONYMOUS_CODING Doa
2L	712475	2L_712475_SNP [dm3] 2L_712475_SNP [dm6]	A	G	2.607e^-4	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16381096	3R_16381096_SNP [dm3] 3R_20555374_SNP [dm6]	G	A	2.607e^-4	0.96	UPSTREAM att-ORFA & 1 other INTRON att-ORFA	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
3L	11853225	3L_11853225_SNP [dm3] 3L_11860125_SNP [dm6]	A	C	2.610e^-4	0.96	INTRON CG44837
2R	7375228	2R_7375228_SNP [dm3] 2R_11487723_SNP [dm6]	T	C	2.610e^-4	0.96	INTRON inv
3R	25921962	3R_25921962_SNP [dm3] 3R_30096240_SNP [dm6]	G	C	2.611e^-4	0.96	INTRON sima
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	2.611e^-4	0.96	INTERGENIC
2L	12235421	2L_12235421_SNP [dm3] 2L_12235421_SNP [dm6]	G	T	2.612e^-4	0.96	INTRON aret
X	11302043	X_11302043_SNP [dm3] X_11408010_SNP [dm6]	T	C	2.616e^-4	0.96	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
2L	12415253	2L_12415253_SNP [dm3] 2L_12415253_SNP [dm6]	G	A	2.620e^-4	0.96	INTRON vir-1
3R	6489066	3R_6489066_SNP [dm3] 3R_10663344_SNP [dm6]	G	A	2.623e^-4	0.96	INTERGENIC
3R	15214865	3R_15214865_SNP [dm3] 3R_19389143_SNP [dm6]	C	T	2.630e^-4	0.96	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	7536245	2L_7536245_SNP [dm3] 2L_7536245_SNP [dm6]	C	G	2.633e^-4	0.96	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19526466	2R_19526466_INS [dm3] 2R_23638943_INS [dm6]	T	TCTTT	2.635e^-4	0.96	INTRON retn EXON CR45153	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19726924	X_19726924_INS [dm3] X_19832891_INS [dm6]	G	GG	2.639e^-4	0.96	UTR_3_PRIME pico
3R	18343165	3R_18343165_SNP [dm3] 3R_22517443_SNP [dm6]	C	T	2.649e^-4	0.96	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	5933785	2R_5933785_SNP [dm3] 2R_10046280_SNP [dm6]	A	C	2.650e^-4	0.96	INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	3751307	2L_3751307_SNP [dm3] 2L_3751307_SNP [dm6]	C	A	2.655e^-4	0.96	INTRON CG10019
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	2.662e^-4	0.96	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
X	17061765	X_17061765_SNP [dm3] X_17167732_SNP [dm6]	C	G	2.670e^-4	0.96	INTRON baz
3L	13257009	3L_13257009_SNP [dm3] 3L_13263909_SNP [dm6]	C	G	2.675e^-4	0.96	INTRON caps	enhancer mE1_CBP_Enhancers
3L	5363093	3L_5363093_SNP [dm3] 3L_5369993_SNP [dm6]	C	T	2.676e^-4	0.96	EXON CR44515
3R	16004577	3R_16004577_SNP [dm3] 3R_20178855_SNP [dm6]	C	T	2.678e^-4	0.96	INTERGENIC
3R	16033923	3R_16033923_SNP [dm3] 3R_20208201_SNP [dm6]	A	G	2.679e^-4	0.96	UTR_3_PRIME CG17199 INTRON Nlg4
2R	6787113	2R_6787113_SNP [dm3] 2R_10899608_SNP [dm6]	G	A	2.685e^-4	0.96	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19255310	3L_19255310_DEL [dm3] 3L_19262210_DEL [dm6]	AG	A	2.689e^-4	0.96	UTR_3_PRIME Bet1 DOWNSTREAM Max & 1 other	TF binding site mE1_TFBS_HSA
X	8194583	X_8194583_INS [dm3] X_8300550_INS [dm6]	G	GTTCAAAGTAAAAATCCCAG...	2.695e^-4	0.96	INTRON nAChRalpha3
2L	5862337	2L_5862337_SNP [dm3] 2L_5862337_SNP [dm6]	C	A	2.695e^-4	0.96	INTRON rau
2R	11981103	2R_11981103_INS [dm3] 2R_16093598_INS [dm6]	A	AA	2.699e^-4	0.96	INTRON Dg	TF binding site BDTNP1_TFBS_dl
3L	4160587	3L_4160587_SNP [dm3] 3L_4160587_SNP [dm6]	G	T	2.710e^-4	0.96	SYNONYMOUS_CODING nab	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	13254095	3L_13254095_SNP [dm3] 3L_13260995_SNP [dm6]	G	A	2.729e^-4	0.96	INTRON caps
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	2.732e^-4	0.96	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19277830	2R_19277830_SNP [dm3] 2R_23390307_SNP [dm6]	G	T	2.735e^-4	0.96	SPLICE_SITE_REGION CG3530 SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21570694	3R_21570694_SNP [dm3] 3R_25744972_SNP [dm6]	C	T	2.740e^-4	0.96	SPLICE_SITE_REGION LpR1 INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	2.742e^-4	0.96	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	2.759e^-4	0.96	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
3L	5589687	3L_5589687_SNP [dm3] 3L_5596587_SNP [dm6]	G	A	2.764e^-4	0.96	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12346495	2R_12346495_SNP [dm3] 2R_16458990_SNP [dm6]	T	C	2.779e^-4	0.96	INTERGENIC
3R	25921995	3R_25921995_SNP [dm3] 3R_30096273_SNP [dm6]	C	T	2.791e^-4	0.96	INTRON sima
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	2.816e^-4	0.96	DOWNSTREAM CG6481 & 1 other INTRON Bx
2R	17479388	2R_17479388_DEL [dm3] 2R_21591883_DEL [dm6]	CGGGGGAACCC...	C	2.818e^-4	0.96	DOWNSTREAM CG33225 INTERGENIC
3R	25982958	3R_25982958_SNP [dm3] 3R_30157236_SNP [dm6]	A	G	2.819e^-4	0.96	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21272578	3R_21272578_SNP [dm3] 3R_25446856_SNP [dm6]	A	G	2.833e^-4	0.96	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26014725	3R_26014725_SNP [dm3] 3R_30189003_SNP [dm6]	G	A	2.839e^-4	0.96	INTRON CG9747
3R	26014784	3R_26014784_SNP [dm3] 3R_30189062_SNP [dm6]	C	T	2.839e^-4	0.96	INTRON CG9747
X	15999692	X_15999692_SNP [dm3] X_16105659_SNP [dm6]	T	C	2.847e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2R	12699783	2R_12699783_SNP [dm3] 2R_16812278_SNP [dm6]	T	A	2.855e^-4	0.96	EXON CR44379
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	2.859e^-4	0.96	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7802006	3R_7802006_SNP [dm3] 3R_11976284_SNP [dm6]	T	G	2.859e^-4	0.96	SYNONYMOUS_CODING CG10005	TF binding site mE1_TFBS_sens
3L	18902059	3L_18902059_SNP [dm3] 3L_18908959_SNP [dm6]	T	C	2.860e^-4	0.96	DOWNSTREAM CG6841 INTRON CG14077 & 1 other
3L	9025348	3L_9025348_SNP [dm3] 3L_9032248_SNP [dm6]	T	C	2.872e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6891432	2L_6891432_SNP [dm3] 2L_6891432_SNP [dm6]	C	T	2.878e^-4	0.96	INTRON Nlg2
3L	7860776	3L_7860776_SNP [dm3] 3L_7867676_SNP [dm6]	G	A	2.897e^-4	0.96	UPSTREAM Pdp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12314643	2R_12314643_SNP [dm3] 2R_16427138_SNP [dm6]	C	A	2.922e^-4	0.96	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16722395	X_16722395_SNP [dm3] X_16828362_SNP [dm6]	C	T	2.927e^-4	0.96	UPSTREAM CG13004 INTRON CG13004
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	2.928e^-4	0.96	UPSTREAM CG5890 INTRON CG5890
2R	6785434	2R_6785434_SNP [dm3] 2R_10897929_SNP [dm6]	A	G	2.931e^-4	0.96	UPSTREAM CG7712 DOWNSTREAM Rpb5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
X	16787324	X_16787324_SNP [dm3] X_16893291_SNP [dm6]	T	A	2.935e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	2024001	3L_2024001_SNP [dm3] 3L_2024001_SNP [dm6]	C	G	2.939e^-4	0.96	UPSTREAM CG42356 INTERGENIC
2L	16886535	2L_16886535_SNP [dm3] 2L_16886535_SNP [dm6]	T	C	2.939e^-4	0.96	DOWNSTREAM CG6115 & 2 others INTERGENIC
2R	14859714	2R_14859714_SNP [dm3] 2R_18972209_SNP [dm6]	G	C	2.940e^-4	0.96	UPSTREAM Topors INTRON CG15107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15999662	X_15999662_SNP [dm3] X_16105629_SNP [dm6]	T	C	2.949e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
2L	16598419	2L_16598419_SNP [dm3] 2L_16598419_SNP [dm6]	C	T	2.965e^-4	0.96	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19660044	2R_19660044_SNP [dm3] 2R_23772521_SNP [dm6]	C	T	2.968e^-4	0.96	INTRON CG9850
3L	5363092	3L_5363092_SNP [dm3] 3L_5369992_SNP [dm6]	A	T	2.979e^-4	0.96	EXON CR44515
3R	25993034	3R_25993034_SNP [dm3] 3R_30167312_SNP [dm6]	T	G	2.979e^-4	0.96	UPSTREAM CG31030 INTRON CG31028
3R	25167747	3R_25167747_SNP [dm3] 3R_29342025_SNP [dm6]	T	C	2.981e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18524843	3R_18524843_SNP [dm3] 3R_22699121_SNP [dm6]	G	A	2.983e^-4	0.96	INTRON Cyp6d4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.992e^-4	0.96	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
X	16721435	X_16721435_SNP [dm3] X_16827402_SNP [dm6]	G	A	2.994e^-4	0.96	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
X	16721444	X_16721444_SNP [dm3] X_16827411_SNP [dm6]	G	T	2.994e^-4	0.96	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	1420811	3L_1420811_SNP [dm3] 3L_1420811_SNP [dm6]	A	G	2.998e^-4	0.96	DOWNSTREAM CG9173 INTRON Ptp61F
3R	14903018	3R_14903018_SNP [dm3] 3R_19077296_SNP [dm6]	A	G	3.000e^-4	0.96	INTRON cdi
3R	19232074	3R_19232074_SNP [dm3] 3R_23406352_SNP [dm6]	C	T	3.019e^-4	0.96	SYNONYMOUS_CODING Ir94e
2L	2928942	2L_2928942_SNP [dm3] 2L_2928942_SNP [dm6]	G	C	3.027e^-4	0.96	INTRON lilli
X	2346800	X_2346800_SNP [dm3] X_2452767_SNP [dm6]	C	T	3.031e^-4	0.96	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	19288910	3L_19288910_SNP [dm3] 3L_19295810_SNP [dm6]	G	A	3.040e^-4	0.96	INTRON fal	TF binding site BDTNP1_TFBS_dl
X	15999452	X_15999452_SNP [dm3] X_16105419_SNP [dm6]	C	T	3.051e^-4	0.96	UPSTREAM CG42354 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3L	19312502	3L_19312502_SNP [dm3] 3L_19319402_SNP [dm6]	A	G	3.055e^-4	0.96	INTRON pip	TF binding site mE1_TFBS_cad
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	3.060e^-4	0.96	INTRON Eip63E
3R	4283246	3R_4283246_SNP [dm3] 3R_8457524_SNP [dm6]	G	A	3.062e^-4	0.96	INTRON CG45263
2L	10461467	2L_10461467_SNP [dm3] 2L_10461467_SNP [dm6]	C	T	3.065e^-4	0.96	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	3.068e^-4	0.96	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2061137	2L_2061137_SNP [dm3] 2L_2061137_SNP [dm6]	G	T	3.070e^-4	0.96	INTRON dpr3
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	3.071e^-4	0.96	INTERGENIC
3R	23475954	3R_23475954_SNP [dm3] 3R_27650232_SNP [dm6]	T	C	3.073e^-4	0.96	DOWNSTREAM tau INTRON tau
X	9222216	X_9222216_SNP [dm3] X_9328183_SNP [dm6]	T	C	3.075e^-4	0.96	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11766632	3L_11766632_SNP [dm3] 3L_11773532_SNP [dm6]	C	A	3.082e^-4	0.96	DOWNSTREAM mir-956 & 2 others INTERGENIC
3L	19288671	3L_19288671_SNP [dm3] 3L_19295571_SNP [dm6]	C	T	3.086e^-4	0.96	INTRON fal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8706797	2R_8706797_SNP [dm3] 2R_12819292_SNP [dm6]	G	C	3.097e^-4	0.96	INTERGENIC
3R	14221887	3R_14221887_SNP [dm3] 3R_18396165_SNP [dm6]	C	A	3.100e^-4	0.96	UPSTREAM CG44009 INTRON Vha100-2	TF binding site BDTNP1_TFBS_dl
X	12597599	X_12597599_SNP [dm3] X_12703566_SNP [dm6]	A	G	3.105e^-4	0.96	INTRON Smr	TF binding site mE1_TFBS_HSA
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	3.108e^-4	0.96	INTRON fas
2L	7341907	2L_7341907_SNP [dm3] 2L_7341907_SNP [dm6]	C	A	3.110e^-4	0.96	INTRON Wnt6
2R	4199862	2R_4199862_DEL [dm3] 2R_8312357_DEL [dm6]	TCTCA	T	3.112e^-4	0.96	DOWNSTREAM CR44450 INTERGENIC
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	3.114e^-4	0.96	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3L	8046505	3L_8046505_SNP [dm3] 3L_8053405_SNP [dm6]	T	C	3.118e^-4	0.96	UTR_3_PRIME nmo DOWNSTREAM nmo & 1 other
3L	18197148	3L_18197148_SNP [dm3] 3L_18204048_SNP [dm6]	A	T	3.118e^-4	0.96	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	13315757	3L_13315757_SNP [dm3] 3L_13322657_SNP [dm6]	G	T	3.123e^-4	0.96	INTERGENIC
X	10014463	X_10014463_SNP [dm3] X_10120430_SNP [dm6]	T	C	3.125e^-4	0.96	INTRON RhoU & 1 other
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	3.134e^-4	0.96	INTRON Ptp61F
3R	16064174	3R_16064174_DEL [dm3] 3R_20238452_DEL [dm6]	CAC	C	3.134e^-4	0.96	INTRON Nlg4
3R	16064179	3R_16064179_INS [dm3] 3R_20238457_INS [dm6]	A	AATAATATAC	3.134e^-4	0.96	INTRON Nlg4
3R	16064183	3R_16064183_SNP [dm3] 3R_20238461_SNP [dm6]	C	T	3.134e^-4	0.96	INTRON Nlg4
2L	18755533	2L_18755533_SNP [dm3] 2L_18755533_SNP [dm6]	T	G	3.157e^-4	0.96	INTERGENIC
2L	12722699	2L_12722699_SNP [dm3] 2L_12722699_SNP [dm6]	G	A	3.172e^-4	0.96	SYNONYMOUS_CODING MRP UPSTREAM CG5792	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	4198265	2L_4198265_SNP [dm3] 2L_4198265_SNP [dm6]	A	G	3.173e^-4	0.96	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	1453803	X_1453803_SNP [dm3] X_1559770_SNP [dm6]	C	T	3.176e^-4	0.96	INTRON Mur2B
2R	12968619	2R_12968619_SNP [dm3] 2R_17081114_SNP [dm6]	A	G	3.177e^-4	0.96	SPLICE_SITE_REGION CG30460 SYNONYMOUS_CODING CG30460
3R	4134168	3R_4134168_SNP [dm3] 3R_8308446_SNP [dm6]	A	G	3.179e^-4	0.96	DOWNSTREAM mir-4918 & 1 other INTRON tex EXON mir-4918	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8658062	2L_8658062_SNP [dm3] 2L_8658062_SNP [dm6]	C	T	3.181e^-4	0.96	INTRON Sema-1a
2L	8703286	2L_8703286_MNP [dm3] 2L_8703286_MNP [dm6]	TCA	AAC	3.182e^-4	0.96	UPSTREAM CR44992 INTRON Hnf4
X	16721471	X_16721471_SNP [dm3] X_16827438_SNP [dm6]	A	T	3.184e^-4	0.96	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2L	4203826	2L_4203826_SNP [dm3] 2L_4203826_SNP [dm6]	C	G	3.185e^-4	0.96	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
3R	26118923	3R_26118923_SNP [dm3] 3R_30293201_SNP [dm6]	G	T	3.196e^-4	0.96	INTRON hdc
3L	14201253	3L_14201253_SNP [dm3] 3L_14208153_SNP [dm6]	A	T	3.207e^-4	0.96	INTRON nuf
X	1453816	X_1453816_SNP [dm3] X_1559783_SNP [dm6]	A	G	3.209e^-4	0.96	INTRON Mur2B
2L	1849292	2L_1849292_SNP [dm3] 2L_1849292_SNP [dm6]	A	G	3.213e^-4	0.96	INTRON wry
X	9819021	X_9819021_SNP [dm3] X_9924988_SNP [dm6]	A	C	3.216e^-4	0.96	INTERGENIC
3R	12092823	3R_12092823_SNP [dm3] 3R_16267101_SNP [dm6]	G	A	3.225e^-4	0.96	SYNONYMOUS_CODING Mst89B DOWNSTREAM asun
2L	4847184	2L_4847184_SNP [dm3] 2L_4847184_SNP [dm6]	T	C	3.240e^-4	0.96	UTR_5_PRIME mxt UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	506971	2L_506971_SNP [dm3] 2L_506971_SNP [dm6]	C	T	3.244e^-4	0.96	INTRON ush
3L	19025231	3L_19025231_SNP [dm3] 3L_19032131_SNP [dm6]	A	G	3.255e^-4	0.96	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25921622	3R_25921622_SNP [dm3] 3R_30095900_SNP [dm6]	G	C	3.262e^-4	0.96	INTRON sima
2R	3838924	2R_3838924_SNP [dm3] 2R_7951419_SNP [dm6]	C	T	3.270e^-4	0.96	UTR_3_PRIME CG30378 DOWNSTREAM CG11165 & 1 other INTRON CG14764	TF binding site BDTNP1_TFBS_twi
2R	15487561	2R_15487561_SNP [dm3] 2R_19600056_SNP [dm6]	G	A	3.270e^-4	0.96	INTRON sm
X	19726949	X_19726949_SNP [dm3] X_19832916_SNP [dm6]	A	T	3.278e^-4	0.96	UTR_3_PRIME pico
2L	1953779	2L_1953779_INS [dm3] 2L_1953779_INS [dm6]	G	GCGG	3.282e^-4	0.96	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	19278519	2R_19278519_SNP [dm3] 2R_23390996_SNP [dm6]	A	C	3.285e^-4	0.96	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8609139	2L_8609139_SNP [dm3] 2L_8609139_SNP [dm6]	A	T	3.292e^-4	0.96	INTRON Sema-1a
X	12390238	X_12390238_SNP [dm3] X_12496205_SNP [dm6]	T	C	3.311e^-4	0.96	SYNONYMOUS_CODING Mks1 UPSTREAM CG2556	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13315758	3L_13315758_SNP [dm3] 3L_13322658_SNP [dm6]	G	T	3.324e^-4	0.96	INTERGENIC
2L	20498711	2L_20498711_SNP [dm3] 2L_20498711_SNP [dm6]	C	T	3.327e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	8025385	2L_8025385_SNP [dm3] 2L_8025385_SNP [dm6]	T	G	3.327e^-4	0.96	SYNONYMOUS_CODING Tg
2L	17142542	2L_17142542_SNP [dm3] 2L_17142542_SNP [dm6]	C	T	3.329e^-4	0.96	INTRON beat-IIIa & 1 other
2L	3784831	2L_3784831_INS [dm3] 2L_3784831_INS [dm6]	GT	TCC	3.354e^-4	0.96	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
2R	19502752	2R_19502752_SNP [dm3] 2R_23615229_SNP [dm6]	T	A	3.357e^-4	0.96	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3L	14022550	3L_14022550_SNP [dm3] 3L_14029450_SNP [dm6]	G	A	3.360e^-4	0.96	UPSTREAM ptip DOWNSTREAM endos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	18021949	2R_18021949_SNP [dm3] 2R_22134444_SNP [dm6]	G	A	3.362e^-4	0.96	INTERGENIC
2R	5112248	2R_5112248_INS [dm3] 2R_9224743_INS [dm6]	A	AATTCGCA	3.364e^-4	0.96	INTERGENIC
3L	19278622	3L_19278622_SNP [dm3] 3L_19285522_SNP [dm6]	T	C	3.366e^-4	0.96	INTRON Gbs-76A
2R	7404313	2R_7404313_SNP [dm3] 2R_11516808_SNP [dm6]	T	C	3.369e^-4	0.96	INTERGENIC
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	3.370e^-4	0.96	INTRON Mp
3R	26121462	3R_26121462_SNP [dm3] 3R_30295740_SNP [dm6]	A	C	3.371e^-4	0.96	INTRON hdc
3L	19087963	3L_19087963_SNP [dm3] 3L_19094863_SNP [dm6]	A	G	3.371e^-4	0.96	DOWNSTREAM CG11577 & 1 other INTERGENIC
2L	14362790	2L_14362790_SNP [dm3] 2L_14362790_SNP [dm6]	A	G	3.385e^-4	0.96	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2187454	3L_2187454_SNP [dm3] 3L_2187454_SNP [dm6]	C	T	3.394e^-4	0.96	SYNONYMOUS_CODING CG13810	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12453464	X_12453464_SNP [dm3] X_12559431_SNP [dm6]	C	T	3.396e^-4	0.96	INTRON CG43921
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	3.397e^-4	0.96	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24201927	3R_24201927_SNP [dm3] 3R_28376205_SNP [dm6]	C	T	3.400e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	4199856	2R_4199856_DEL [dm3] 2R_8312351_DEL [dm6]	AATA	A	3.406e^-4	0.96	DOWNSTREAM CR44450 INTERGENIC
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	3.407e^-4	0.96	INTRON bbg
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	3.414e^-4	0.96	INTERGENIC
3R	25990623	3R_25990623_SNP [dm3] 3R_30164901_SNP [dm6]	A	C	3.421e^-4	0.96	UTR_3_PRIME CG31030
3R	14403315	3R_14403315_SNP [dm3] 3R_18577593_SNP [dm6]	A	G	3.423e^-4	0.96	INTRON fray & 1 other
3R	8830731	3R_8830731_SNP [dm3] 3R_13005009_SNP [dm6]	C	T	3.430e^-4	0.96	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	3.431e^-4	0.96	INTRON Duox
3L	16330645	3L_16330645_SNP [dm3] 3L_16337545_SNP [dm6]	T	C	3.447e^-4	0.96	INTERGENIC
2R	12088839	2R_12088839_SNP [dm3] 2R_16201334_SNP [dm6]	G	T	3.467e^-4	0.96	NON_SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	3.475e^-4	0.96	SYNONYMOUS_CODING Sytalpha
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	3.488e^-4	0.96	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	24756686	3R_24756686_SNP [dm3] 3R_28930964_SNP [dm6]	A	C	3.512e^-4	0.96	INTRON CG14521
3R	24773007	3R_24773007_SNP [dm3] 3R_28947285_SNP [dm6]	A	T	3.515e^-4	0.96	INTRON CG14521
X	12318079	X_12318079_SNP [dm3] X_12424046_SNP [dm6]	A	T	3.517e^-4	0.96	INTERGENIC
3R	25990599	3R_25990599_SNP [dm3] 3R_30164877_SNP [dm6]	G	A	3.522e^-4	0.96	UTR_3_PRIME CG31030
2R	5952266	2R_5952266_SNP [dm3] 2R_10064761_SNP [dm6]	G	C	3.524e^-4	0.96	SYNONYMOUS_CODING CG2292	TF binding site mE1_TFBS_HSA
2R	7751414	2R_7751414_DEL [dm3] 2R_11863909_DEL [dm6]	TTTAGCTTAAAAACCCCCAA...	A	3.528e^-4	0.96	UPSTREAM CG42531 & 1 other INTERGENIC
3R	15166754	3R_15166754_SNP [dm3] 3R_19341032_SNP [dm6]	C	T	3.542e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	3.547e^-4	0.96	INTRON CG30463
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	3.566e^-4	0.96	DOWNSTREAM CR45720 INTERGENIC
3R	14229618	3R_14229618_SNP [dm3] 3R_18403896_SNP [dm6]	C	T	3.575e^-4	0.96	SPLICE_SITE_REGION koko SYNONYMOUS_CODING koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11292861	2R_11292861_SNP [dm3] 2R_15405356_SNP [dm6]	C	A	3.581e^-4	0.96	DOWNSTREAM CR45020 INTRON CG43729
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	3.595e^-4	0.96	UPSTREAM CG44403 INTRON CG10936
3L	11795439	3L_11795439_INS [dm3] 3L_11802339_INS [dm6]	C	CA	3.599e^-4	0.96	UPSTREAM tRNA:CR32093 INTRON CG42255
X	1452160	X_1452160_SNP [dm3] X_1558127_SNP [dm6]	G	T	3.611e^-4	0.96	NON_SYNONYMOUS_CODING Mur2B DOWNSTREAM snmRNA:400	TF binding site mE1_TFBS_chinmo
X	16721280	X_16721280_SNP [dm3] X_16827247_SNP [dm6]	T	A	3.614e^-4	0.96	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	12997653	3L_12997653_SNP [dm3] 3L_13004553_SNP [dm6]	G	A	3.615e^-4	0.96	INTERGENIC
X	4585945	X_4585945_SNP [dm3] X_4691912_SNP [dm6]	C	T	3.618e^-4	0.96	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	1089084	2L_1089084_SNP [dm3] 2L_1089084_SNP [dm6]	G	A	3.622e^-4	0.96	INTRON CG4629
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	3.623e^-4	0.96	INTERGENIC
2L	14362796	2L_14362796_SNP [dm3] 2L_14362796_SNP [dm6]	A	T	3.626e^-4	0.96	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	712527	2L_712527_SNP [dm3] 2L_712527_SNP [dm6]	G	C	3.628e^-4	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	21059022	2R_21059022_SNP [dm3] 2R_25171499_SNP [dm6]	T	G	3.633e^-4	0.96	DOWNSTREAM Sfp60F INTERGENIC
3L	13745657	3L_13745657_SNP [dm3] 3L_13752557_SNP [dm6]	G	T	3.647e^-4	0.96	INTRON bru-3
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	3.653e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9011459	2L_9011459_SNP [dm3] 2L_9011459_SNP [dm6]	G	A	3.655e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	3.661e^-4	0.96	INTRON Ten-a
3R	18524824	3R_18524824_DEL [dm3] 3R_22699102_DEL [dm6]	GTGAG	TC	3.664e^-4	0.96	INTRON Cyp6d4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	835548	3L_835548_SNP [dm3] 3L_835548_SNP [dm6]	T	A	3.665e^-4	0.96	UPSTREAM CG42554 DOWNSTREAM CG42553 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10925840	2R_10925840_SNP [dm3] 2R_15038335_SNP [dm6]	T	A	3.665e^-4	0.96	SYNONYMOUS_CODING hbs
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	3.670e^-4	0.96	INTRON CG32365
X	10286224	X_10286224_SNP [dm3] X_10392191_SNP [dm6]	A	T	3.671e^-4	0.96	INTRON flw
3R	19650139	3R_19650139_SNP [dm3] 3R_23824417_SNP [dm6]	T	C	3.681e^-4	0.96	DOWNSTREAM CR43285 INTRON CG34355
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	3.682e^-4	0.96	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	11663799	3L_11663799_DEL [dm3] 3L_11670699_DEL [dm6]	AA	A	3.686e^-4	0.96	INTRON CG32085
2R	7800808	2R_7800808_SNP [dm3] 2R_11913303_SNP [dm6]	C	A	3.687e^-4	0.96	UPSTREAM CG13183 INTERGENIC
3R	18351621	3R_18351621_SNP [dm3] 3R_22525899_SNP [dm6]	C	A	3.689e^-4	0.96	INTRON CG5346	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18172870	3R_18172870_SNP [dm3] 3R_22347148_SNP [dm6]	A	T	3.692e^-4	0.96	INTERGENIC
X	16829700	X_16829700_SNP [dm3] X_16935667_SNP [dm6]	A	G	3.693e^-4	0.96	SYNONYMOUS_CODING CG4928
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	3.700e^-4	0.96	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19235794	3R_19235794_SNP [dm3] 3R_23410072_SNP [dm6]	G	T	3.701e^-4	0.96	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12222198	X_12222198_SNP [dm3] X_12328165_SNP [dm6]	C	T	3.701e^-4	0.96	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	19033957	3L_19033957_SNP [dm3] 3L_19040857_SNP [dm6]	A	G	3.702e^-4	0.96	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	12314707	2R_12314707_SNP [dm3] 2R_16427202_SNP [dm6]	C	A	3.703e^-4	0.96	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6954343	2L_6954343_SNP [dm3] 2L_6954343_SNP [dm6]	C	T	3.705e^-4	0.96	DOWNSTREAM CG13775 INTRON SA
2L	10310614	2L_10310614_SNP [dm3] 2L_10310614_SNP [dm6]	G	T	3.712e^-4	0.96	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	11220668	3R_11220668_DEL [dm3] 3R_15394946_DEL [dm6]	AGGGAACTA	A	3.713e^-4	0.96	INTRON Rbp
3R	15166245	3R_15166245_SNP [dm3] 3R_19340523_SNP [dm6]	T	A	3.715e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16230659	3L_16230659_SNP [dm3] 3L_16237559_SNP [dm6]	C	A	3.725e^-4	0.96	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	3.743e^-4	0.96	UPSTREAM dnc INTRON dnc
4	504402	4_504402_DEL [dm3] 4_483776_DEL [dm6]	GG	G	3.749e^-4	0.96	UTR_5_PRIME Asator INTRON Asator
3R	26849489	3R_26849489_SNP [dm3] 3R_31023767_SNP [dm6]	C	A	3.752e^-4	0.96	INTERGENIC
3L	18362156	3L_18362156_SNP [dm3] 3L_18369056_SNP [dm6]	G	A	3.754e^-4	0.96	INTERGENIC
2R	7814948	2R_7814948_SNP [dm3] 2R_11927443_SNP [dm6]	T	A	3.754e^-4	0.96	INTERGENIC
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	3.762e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
3R	25738543	3R_25738543_SNP [dm3] 3R_29912821_SNP [dm6]	C	T	3.764e^-4	0.96	UTR_3_PRIME CG31036 DOWNSTREAM Capa
2L	16236466	2L_16236466_SNP [dm3] 2L_16236466_SNP [dm6]	T	C	3.767e^-4	0.96	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
3R	4270893	3R_4270893_SNP [dm3] 3R_8445171_SNP [dm6]	G	A	3.769e^-4	0.96	INTRON CG45263
2L	18168955	2L_18168955_SNP [dm3] 2L_18168955_SNP [dm6]	G	A	3.775e^-4	0.96	INTRON CG42750	TF binding site mE1_TFBS_inv
X	12597600	X_12597600_SNP [dm3] X_12703567_SNP [dm6]	T	C	3.801e^-4	0.96	INTRON Smr	TF binding site mE1_TFBS_HSA
3R	12764148	3R_12764148_SNP [dm3] 3R_16938426_SNP [dm6]	C	T	3.806e^-4	0.96	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26339897	3R_26339897_SNP [dm3] 3R_30514175_SNP [dm6]	A	G	3.808e^-4	0.96	NON_SYNONYMOUS_CODING CG31524 UPSTREAM CG9698
3R	6530439	3R_6530439_SNP [dm3] 3R_10704717_SNP [dm6]	A	T	3.812e^-4	0.96	SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467
X	8914641	X_8914641_SNP [dm3] X_9020608_SNP [dm6]	T	A	3.814e^-4	0.96	INTRON CR43836 & 1 other
X	4585943	X_4585943_SNP [dm3] X_4691910_SNP [dm6]	G	A	3.814e^-4	0.96	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	8997491	2L_8997491_SNP [dm3] 2L_8997491_SNP [dm6]	G	A	3.837e^-4	0.96	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	7929418	3L_7929418_SNP [dm3] 3L_7936318_SNP [dm6]	A	C	3.838e^-4	0.96	UPSTREAM Srp9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	3.838e^-4	0.96	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2R	6784055	2R_6784055_SNP [dm3] 2R_10896550_SNP [dm6]	A	G	3.842e^-4	0.96	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	6909182	3R_6909182_SNP [dm3] 3R_11083460_SNP [dm6]	T	A	3.843e^-4	0.96	INTERGENIC
2L	14362763	2L_14362763_SNP [dm3] 2L_14362763_SNP [dm6]	G	A	3.846e^-4	0.96	SYNONYMOUS_CODING spel1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	5461298	3R_5461298_SNP [dm3] 3R_9635576_SNP [dm6]	A	G	3.847e^-4	0.96	SPLICE_SITE_REGION Scm INTRON Scm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1453997	X_1453997_SNP [dm3] X_1559964_SNP [dm6]	G	T	3.864e^-4	0.96	INTRON Mur2B
3R	20948453	3R_20948453_SNP [dm3] 3R_25122731_SNP [dm6]	G	A	3.866e^-4	0.96	UTR_5_PRIME CG31108 & 1 other UPSTREAM vig2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	12173080	X_12173080_SNP [dm3] X_12279047_SNP [dm6]	T	C	3.867e^-4	0.96	INTRON Ten-a
2R	19612206	2R_19612206_SNP [dm3] 2R_23724683_SNP [dm6]	T	G	3.868e^-4	0.96	INTRON Sesn
3R	415358	3R_415358_SNP [dm3] 3R_4589636_SNP [dm6]	A	G	3.879e^-4	0.96	UPSTREAM CR45558 INTERGENIC	transposable element FlyBase
3R	16034667	3R_16034667_SNP [dm3] 3R_20208945_SNP [dm6]	G	C	3.882e^-4	0.96	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	19263493	3L_19263493_SNP [dm3] 3L_19270393_SNP [dm6]	G	A	3.886e^-4	0.96	NON_SYNONYMOUS_CODING CG14088 INTRON CG14085	TF binding site mE1_TFBS_cad
3L	920504	3L_920504_SNP [dm3] 3L_920504_SNP [dm6]	A	G	3.891e^-4	0.96	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24705003	3R_24705003_SNP [dm3] 3R_28879281_SNP [dm6]	C	T	3.903e^-4	0.96	NON_SYNONYMOUS_CODING CG14523 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26019928	3R_26019928_SNP [dm3] 3R_30194206_SNP [dm6]	T	C	3.908e^-4	0.96	DOWNSTREAM CG15531 INTERGENIC
2R	7099514	2R_7099514_SNP [dm3] 2R_11212009_SNP [dm6]	G	A	3.919e^-4	0.96	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	3.925e^-4	0.96	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	10871925	2L_10871925_SNP [dm3] 2L_10871925_SNP [dm6]	T	A	3.927e^-4	0.96	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
4	450690	4_450690_SNP [dm3] 4_430064_SNP [dm6]	C	A	3.942e^-4	0.96	EXON CR44024	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	3.945e^-4	0.96	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25922063	3R_25922063_SNP [dm3] 3R_30096341_SNP [dm6]	G	C	3.946e^-4	0.96	INTRON sima
2R	11474564	2R_11474564_SNP [dm3] 2R_15587059_SNP [dm6]	T	C	3.951e^-4	0.96	INTERGENIC
3L	13315737	3L_13315737_INS [dm3] 3L_13322637_INS [dm6]	T	TCTCTTTAATCTTTCTTTAT...	3.962e^-4	0.96	INTERGENIC
2L	10073097	2L_10073097_SNP [dm3] 2L_10073097_SNP [dm6]	C	A	3.963e^-4	0.96	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	18395235	2L_18395235_SNP [dm3] 2L_18395235_SNP [dm6]	T	C	3.964e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1466202	3L_1466202_SNP [dm3] 3L_1466202_SNP [dm6]	T	C	3.975e^-4	0.96	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
2L	9011489	2L_9011489_SNP [dm3] 2L_9011489_SNP [dm6]	T	A	3.985e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	18302498	2L_18302498_SNP [dm3] 2L_18302498_SNP [dm6]	G	A	3.985e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10301988	2R_10301988_SNP [dm3] 2R_14414483_SNP [dm6]	A	G	3.985e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	13040896	3L_13040896_SNP [dm3] 3L_13047796_SNP [dm6]	A	T	3.986e^-4	0.96	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14150000	3L_14150000_SNP [dm3] 3L_14156900_SNP [dm6]	T	C	3.991e^-4	0.96	INTERGENIC	regulatory region REDfly_CRMs
3R	18524839	3R_18524839_SNP [dm3] 3R_22699117_SNP [dm6]	G	A	3.992e^-4	0.96	INTRON Cyp6d4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13367276	X_13367276_SNP [dm3] X_13473243_SNP [dm6]	G	A	3.997e^-4	0.96	INTRON Neto
2R	6316748	2R_6316748_SNP [dm3] 2R_10429243_SNP [dm6]	G	A	4.010e^-4	0.96	UPSTREAM RanBPM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11698343	3L_11698343_SNP [dm3] 3L_11705243_SNP [dm6]	C	A	4.010e^-4	0.96	INTRON CG11658
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	4.011e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	21570647	3R_21570647_SNP [dm3] 3R_25744925_SNP [dm6]	A	T	4.012e^-4	0.96	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	4282930	3R_4282930_SNP [dm3] 3R_8457208_SNP [dm6]	G	A	4.012e^-4	0.96	INTRON CG45263
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	4.017e^-4	0.96	INTERGENIC
2L	1211174	2L_1211174_SNP [dm3] 2L_1211174_SNP [dm6]	T	C	4.019e^-4	0.96	INTERGENIC
3R	19235776	3R_19235776_SNP [dm3] 3R_23410054_SNP [dm6]	T	C	4.023e^-4	0.96	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19235793	3R_19235793_SNP [dm3] 3R_23410071_SNP [dm6]	T	G	4.023e^-4	0.96	UTR_3_PRIME CG4374	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	4.023e^-4	0.96	INTERGENIC
3L	13040854	3L_13040854_SNP [dm3] 3L_13047754_SNP [dm6]	T	A	4.026e^-4	0.96	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13040856	3L_13040856_SNP [dm3] 3L_13047756_SNP [dm6]	G	T	4.026e^-4	0.96	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13138840	2L_13138840_SNP [dm3] 2L_13138840_SNP [dm6]	A	G	4.030e^-4	0.96	INTERGENIC
3L	13657454	3L_13657454_SNP [dm3] 3L_13664354_SNP [dm6]	C	G	4.032e^-4	0.96	INTRON bru-3
3L	13951120	3L_13951120_SNP [dm3] 3L_13958020_SNP [dm6]	G	T	4.033e^-4	0.96	INTRON CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1211176	2L_1211176_SNP [dm3] 2L_1211176_SNP [dm6]	T	A	4.033e^-4	0.96	INTERGENIC
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	4.042e^-4	0.96	DOWNSTREAM CR44792 INTERGENIC
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	4.043e^-4	0.96	INTRON spir & 1 other
X	20368167	X_20368167_SNP [dm3] X_20497140_SNP [dm6]	A	G	4.044e^-4	0.96	INTRON RhoGAP19D
3L	11663805	3L_11663805_SNP [dm3] 3L_11670705_SNP [dm6]	G	A	4.048e^-4	0.96	INTRON CG32085
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	4.052e^-4	0.96	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12148324	2L_12148324_SNP [dm3] 2L_12148324_SNP [dm6]	C	T	4.057e^-4	0.96	INTRON CG31760
3R	17147177	3R_17147177_SNP [dm3] 3R_21321455_SNP [dm6]	C	A	4.073e^-4	0.96	INTRON CG16791	TF binding site mE1_TFBS_cad
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	4.073e^-4	0.96	INTRON CG5888
3L	19279217	3L_19279217_SNP [dm3] 3L_19286117_SNP [dm6]	A	G	4.084e^-4	0.96	INTRON Gbs-76A
2R	7751483	2R_7751483_SNP [dm3] 2R_11863978_SNP [dm6]	G	C	4.094e^-4	0.96	UPSTREAM CG42531 & 1 other INTERGENIC
X	12318070	X_12318070_SNP [dm3] X_12424037_SNP [dm6]	A	G	4.098e^-4	0.96	INTERGENIC
3R	10041191	3R_10041191_SNP [dm3] 3R_14215469_SNP [dm6]	G	T	4.105e^-4	0.96	UTR_3_PRIME CG9649 UPSTREAM Dop1R1
2R	11040389	2R_11040389_SNP [dm3] 2R_15152884_SNP [dm6]	A	T	4.109e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3751325	2L_3751325_SNP [dm3] 2L_3751325_SNP [dm6]	G	A	4.111e^-4	0.96	INTRON CG10019
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	4.113e^-4	0.96	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
3R	26012733	3R_26012733_DEL [dm3] 3R_30187011_DEL [dm6]	ATA	A	4.120e^-4	0.96	INTRON CG9747
2L	1351349	2L_1351349_SNP [dm3] 2L_1351349_SNP [dm6]	T	A	4.120e^-4	0.96	DOWNSTREAM CG5556 INTERGENIC
2R	16081118	2R_16081118_DEL [dm3] 2R_20193613_DEL [dm6]	AA	A	4.122e^-4	0.96	INTERGENIC
3R	15738472	3R_15738472_SNP [dm3] 3R_19912750_SNP [dm6]	T	C	4.128e^-4	0.96	NON_SYNONYMOUS_CODING RhoGAP92B	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7753916	2L_7753916_SNP [dm3] 2L_7753916_SNP [dm6]	A	G	4.129e^-4	0.96	UPSTREAM CG7203 & 1 other DOWNSTREAM CR45718 INTERGENIC
2R	19629956	2R_19629956_SNP [dm3] 2R_23742433_SNP [dm6]	G	C	4.132e^-4	0.96	INTRON egl
2R	17781520	2R_17781520_SNP [dm3] 2R_21894015_SNP [dm6]	G	T	4.139e^-4	0.96	INTRON Fili
3R	9859471	3R_9859471_SNP [dm3] 3R_14033749_SNP [dm6]	A	G	4.145e^-4	0.96	SYNONYMOUS_CODING CG3061	TF binding site mE1_TFBS_sens
2L	6820091	2L_6820091_SNP [dm3] 2L_6820091_SNP [dm6]	T	C	4.168e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D
3L	4654975	3L_4654975_SNP [dm3] 3L_4654975_SNP [dm6]	A	T	4.169e^-4	0.96	INTRON axo
2L	18755494	2L_18755494_SNP [dm3] 2L_18755494_SNP [dm6]	C	T	4.176e^-4	0.96	INTERGENIC
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	4.178e^-4	0.96	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	4.182e^-4	0.96	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	5342518	3R_5342518_SNP [dm3] 3R_9516796_SNP [dm6]	A	G	4.186e^-4	0.96	UPSTREAM mRpL47 & 3 others INTRON JHDM2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	4.188e^-4	0.96	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20052445	2L_20052445_SNP [dm3] 2L_20052445_SNP [dm6]	C	T	4.193e^-4	0.96	INTRON sNPF
3L	12715832	3L_12715832_SNP [dm3] 3L_12722732_SNP [dm6]	G	A	4.201e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3784808	2L_3784808_SNP [dm3] 2L_3784808_SNP [dm6]	G	A	4.222e^-4	0.96	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3L	7327050	3L_7327050_DEL [dm3] 3L_7333950_DEL [dm6]	TG	C	4.227e^-4	0.96	UTR_3_PRIME CG43781 & 1 other DOWNSTREAM mus312 & 1 other	TF binding site mE1_TFBS_cad
3R	25921682	3R_25921682_SNP [dm3] 3R_30095960_SNP [dm6]	A	G	4.231e^-4	0.96	INTRON sima
X	14065969	X_14065969_SNP [dm3] X_14171936_SNP [dm6]	G	A	4.239e^-4	0.96	NON_SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
2R	15914407	2R_15914407_SNP [dm3] 2R_20026902_SNP [dm6]	T	C	4.243e^-4	0.96	INTERGENIC
2R	16791698	2R_16791698_SNP [dm3] 2R_20904193_SNP [dm6]	G	T	4.258e^-4	0.96	UPSTREAM otp INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16034288	3R_16034288_SNP [dm3] 3R_20208566_SNP [dm6]	G	T	4.277e^-4	0.96	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	4.285e^-4	0.96	NON_SYNONYMOUS_CODING mbc
4	404293	4_404293_SNP [dm3] 4_383667_SNP [dm6]	G	A	4.288e^-4	0.96	INTRON Lin29	TF binding site BDTNP1_TFBS_dl
3R	22900966	3R_22900966_SNP [dm3] 3R_27075244_SNP [dm6]	C	T	4.290e^-4	0.96	UPSTREAM CG14257 INTERGENIC
3L	23549007	3L_23549007_SNP [dm3] 3L_23555907_SNP [dm6]	T	C	4.293e^-4	0.96	UPSTREAM AGO3 INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	920514	3L_920514_SNP [dm3] 3L_920514_SNP [dm6]	T	C	4.300e^-4	0.96	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1928428	2L_1928428_SNP [dm3] 2L_1928428_SNP [dm6]	C	T	4.302e^-4	0.96	UTR_5_PRIME CG7337 INTRON CG7337
2R	12969265	2R_12969265_SNP [dm3] 2R_17081760_SNP [dm6]	G	A	4.310e^-4	0.96	UTR_5_PRIME CG30460
2R	13745550	2R_13745550_SNP [dm3] 2R_17858045_SNP [dm6]	A	G	4.315e^-4	0.96	INTRON olf186-F
3R	26957535	3R_26957535_SNP [dm3] 3R_31131813_SNP [dm6]	T	C	4.323e^-4	0.96	UPSTREAM CR43458 INTERGENIC
2R	7375425	2R_7375425_SNP [dm3] 2R_11487920_SNP [dm6]	G	T	4.324e^-4	0.96	INTRON inv
2R	11393016	2R_11393016_SNP [dm3] 2R_15505511_SNP [dm6]	C	A	4.327e^-4	0.96	SYNONYMOUS_CODING Ir52c
2L	16230363	2L_16230363_SNP [dm3] 2L_16230363_SNP [dm6]	A	T	4.339e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	9376081	3L_9376081_SNP [dm3] 3L_9382981_SNP [dm6]	C	T	4.339e^-4	0.96	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8707347	2L_8707347_SNP [dm3] 2L_8707347_SNP [dm6]	A	G	4.341e^-4	0.96	UTR_3_PRIME CG9314 INTRON Hnf4
2L	8997437	2L_8997437_SNP [dm3] 2L_8997437_SNP [dm6]	A	G	4.348e^-4	0.96	UPSTREAM CG18661 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Ubx
3L	3755125	3L_3755125_SNP [dm3] 3L_3755125_SNP [dm6]	G	T	4.358e^-4	0.96	UTR_5_PRIME ppk27 INTRON CG32264
3R	25738308	3R_25738308_SNP [dm3] 3R_29912586_SNP [dm6]	T	C	4.369e^-4	0.96	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
3R	26230268	3R_26230268_SNP [dm3] 3R_30404546_SNP [dm6]	C	T	4.371e^-4	0.96	EXON CR45570
3L	13308687	3L_13308687_SNP [dm3] 3L_13315587_SNP [dm6]	C	G	4.374e^-4	0.96	INTERGENIC
3R	14229711	3R_14229711_SNP [dm3] 3R_18403989_SNP [dm6]	T	G	4.375e^-4	0.96	SYNONYMOUS_CODING koko UPSTREAM CG7685	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	17316616	2L_17316616_SNP [dm3] 2L_17316616_SNP [dm6]	C	G	4.378e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad
3R	6909195	3R_6909195_SNP [dm3] 3R_11083473_SNP [dm6]	T	C	4.380e^-4	0.96	INTERGENIC
2L	18294840	2L_18294840_SNP [dm3] 2L_18294840_SNP [dm6]	C	T	4.395e^-4	0.96	UTR_5_PRIME CG5790 UPSTREAM CR43358	TF binding site mE1_TFBS_inv
3R	21689233	3R_21689233_DEL [dm3] 3R_25863511_DEL [dm6]	CATAC	T	4.399e^-4	0.96	INTRON CG5890
3R	25741397	3R_25741397_SNP [dm3] 3R_29915675_SNP [dm6]	A	G	4.400e^-4	0.96	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7644303	3L_7644303_SNP [dm3] 3L_7651203_SNP [dm6]	G	A	4.403e^-4	0.96	UTR_5_PRIME PGRP-SD DOWNSTREAM CG7492 INTRON CG32373
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	4.403e^-4	0.96	INTRON CG9541
X	13690885	X_13690885_SNP [dm3] X_13796852_SNP [dm6]	A	C	4.407e^-4	0.96	SYNONYMOUS_CODING CG10996 INTRON inaE
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	4.419e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14233838	3R_14233838_SNP [dm3] 3R_18408116_SNP [dm6]	A	C	4.424e^-4	0.96	SYNONYMOUS_CODING CG31122
2L	10871924	2L_10871924_SNP [dm3] 2L_10871924_SNP [dm6]	T	A	4.425e^-4	0.96	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
X	20564418	X_20564418_SNP [dm3] X_20693391_SNP [dm6]	G	C	4.428e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	19619509	2R_19619509_SNP [dm3] 2R_23731986_SNP [dm6]	G	C	4.429e^-4	0.96	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	6148861	2L_6148861_SNP [dm3] 2L_6148861_SNP [dm6]	T	C	4.432e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	13188660	3R_13188660_DEL [dm3] 3R_17362938_DEL [dm6]	CAC	C	4.444e^-4	0.96	INTRON beat-IIa
2R	9573196	2R_9573196_SNP [dm3] 2R_13685691_SNP [dm6]	A	G	4.446e^-4	0.96	INTRON fas
3L	722584	3L_722584_SNP [dm3] 3L_722584_SNP [dm6]	T	G	4.447e^-4	0.96	INTERGENIC
2L	4955214	2L_4955214_SNP [dm3] 2L_4955214_SNP [dm6]	A	G	4.457e^-4	0.96	UPSTREAM Marcal1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	12291278	2R_12291278_SNP [dm3] 2R_16403773_SNP [dm6]	A	T	4.461e^-4	0.96	INTRON Sema-2b
2L	1212154	2L_1212154_SNP [dm3] 2L_1212154_SNP [dm6]	A	C	4.463e^-4	0.96	INTERGENIC
2L	9448821	2L_9448821_SNP [dm3] 2L_9448821_SNP [dm6]	C	T	4.468e^-4	0.96	INTRON numb	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	2061426	2L_2061426_SNP [dm3] 2L_2061426_SNP [dm6]	C	T	4.480e^-4	0.96	INTRON dpr3
3R	5460396	3R_5460396_SNP [dm3] 3R_9634674_SNP [dm6]	C	T	4.487e^-4	0.96	NON_SYNONYMOUS_CODING Scm	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	7069946	2R_7069946_SNP [dm3] 2R_11182441_SNP [dm6]	C	A	4.487e^-4	0.96	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	4.492e^-4	0.96	INTERGENIC
2L	18420946	2L_18420946_SNP [dm3] 2L_18420946_SNP [dm6]	C	T	4.498e^-4	0.96	INTERGENIC
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	4.498e^-4	0.96	INTRON lilli	TF binding site mE1_TFBS_Trl
X	20564174	X_20564174_SNP [dm3] X_20693147_SNP [dm6]	A	G	4.502e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	4.502e^-4	0.96	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	4.504e^-4	0.96	INTERGENIC
3R	25240868	3R_25240868_INS [dm3] 3R_29415146_INS [dm6]	G	GG	4.504e^-4	0.96	INTRON Ptp99A
2R	12291273	2R_12291273_SNP [dm3] 2R_16403768_SNP [dm6]	C	A	4.511e^-4	0.96	INTRON Sema-2b
2R	15092913	2R_15092913_SNP [dm3] 2R_19205408_SNP [dm6]	C	G	4.511e^-4	0.96	INTRON hppy
2L	4197935	2L_4197935_SNP [dm3] 2L_4197935_SNP [dm6]	C	T	4.518e^-4	0.96	UTR_5_PRIME CG3714 UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	20105522	2R_20105522_SNP [dm3] 2R_24217999_SNP [dm6]	C	T	4.522e^-4	0.96	INTRON CG30419
2R	15729184	2R_15729184_SNP [dm3] 2R_19841679_SNP [dm6]	A	G	4.526e^-4	0.96	DOWNSTREAM CG44569 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	4.535e^-4	0.96	UTR_5_PRIME Rgk3 INTRON Rgk3
2L	9011467	2L_9011467_SNP [dm3] 2L_9011467_SNP [dm6]	T	A	4.536e^-4	0.96	UPSTREAM CG13102 DOWNSTREAM CG9568 INTERGENIC
2L	11490584	2L_11490584_SNP [dm3] 2L_11490584_SNP [dm6]	C	A	4.536e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	4.538e^-4	0.96	UPSTREAM Ndae1 INTRON Ndae1
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	4.540e^-4	0.96	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	4.540e^-4	0.96	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	4.540e^-4	0.96	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	2061595	2L_2061595_SNP [dm3] 2L_2061595_SNP [dm6]	T	C	4.546e^-4	0.96	INTRON dpr3
4	502492	4_502492_SNP [dm3] 4_481866_SNP [dm6]	C	A	4.553e^-4	0.96	UTR_5_PRIME Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	5932607	2R_5932607_SNP [dm3] 2R_10045102_SNP [dm6]	T	G	4.555e^-4	0.96	INTRON oys EXON CR44295
2L	9127906	2L_9127906_SNP [dm3] 2L_9127906_SNP [dm6]	A	G	4.561e^-4	0.96	INTRON CG32982	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25741376	3R_25741376_SNP [dm3] 3R_29915654_SNP [dm6]	G	A	4.562e^-4	0.96	NON_SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7600386	3R_7600386_SNP [dm3] 3R_11774664_SNP [dm6]	T	A	4.562e^-4	0.96	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8291729	2L_8291729_SNP [dm3] 2L_8291729_SNP [dm6]	T	A	4.563e^-4	0.96	DOWNSTREAM tRNA:K5:29A INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19438806	3R_19438806_DEL [dm3] 3R_23613084_DEL [dm6]	GGATGTGTG	G	4.563e^-4	0.96	INTRON CG31145
3L	19090856	3L_19090856_SNP [dm3] 3L_19097756_SNP [dm6]	G	T	4.584e^-4	0.96	UPSTREAM CG14079 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	3896154	2R_3896154_SNP [dm3] 2R_8008649_SNP [dm6]	T	G	4.587e^-4	0.96	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	4.588e^-4	0.96	INTERGENIC
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	4.590e^-4	0.96	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	7771539	2R_7771539_SNP [dm3] 2R_11884034_SNP [dm6]	C	T	4.593e^-4	0.96	SYNONYMOUS_CODING CG13185
3L	14428794	3L_14428794_SNP [dm3] 3L_14435694_SNP [dm6]	C	A	4.611e^-4	0.96	INTRON bbg
3L	14428796	3L_14428796_INS [dm3] 3L_14435696_INS [dm6]	T	AG	4.611e^-4	0.96	INTRON bbg
2R	5933653	2R_5933653_INS [dm3] 2R_10046148_INS [dm6]	A	AA	4.613e^-4	0.96	DOWNSTREAM CR44295 INTRON oys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
4	494757	4_494757_SNP [dm3] 4_474131_SNP [dm6]	T	G	4.614e^-4	0.96	INTRON Asator
X	1453982	X_1453982_DEL [dm3] X_1559949_DEL [dm6]	TTT	T	4.616e^-4	0.96	INTRON Mur2B
X	1453996	X_1453996_SNP [dm3] X_1559963_SNP [dm6]	T	A	4.616e^-4	0.96	INTRON Mur2B
X	1454038	X_1454038_SNP [dm3] X_1560005_SNP [dm6]	G	T	4.616e^-4	0.96	INTRON Mur2B
3L	11849210	3L_11849210_SNP [dm3] 3L_11856110_SNP [dm6]	G	A	4.616e^-4	0.96	INTRON CG44837
3R	21524059	3R_21524059_SNP [dm3] 3R_25698337_SNP [dm6]	C	T	4.626e^-4	0.96	DOWNSTREAM LpR2 INTERGENIC
2R	13817967	2R_13817967_SNP [dm3] 2R_17930462_SNP [dm6]	C	T	4.635e^-4	0.96	INTERGENIC
3L	8147928	3L_8147928_SNP [dm3] 3L_8154828_SNP [dm6]	T	C	4.638e^-4	0.96	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6825205	2R_6825205_SNP [dm3] 2R_10937700_SNP [dm6]	T	C	4.644e^-4	0.96	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16207569	3R_16207569_DEL [dm3] 3R_20381847_DEL [dm6]	TT	T	4.661e^-4	0.96	INTRON Gfrl
2L	17378829	2L_17378829_SNP [dm3] 2L_17378829_SNP [dm6]	G	A	4.663e^-4	0.96	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10404914	3L_10404914_MNP [dm3] 3L_10411814_MNP [dm6]	GGC	AAT	4.674e^-4	0.96	UPSTREAM CR44543 DOWNSTREAM CR43990 INTERGENIC
X	19726813	X_19726813_SNP [dm3] X_19832780_SNP [dm6]	A	T	4.677e^-4	0.96	UTR_3_PRIME pico
3R	15622439	3R_15622439_SNP [dm3] 3R_19796717_SNP [dm6]	C	T	4.680e^-4	0.96	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	4.685e^-4	0.96	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25740204	3R_25740204_SNP [dm3] 3R_29914482_SNP [dm6]	A	T	4.686e^-4	0.96	UPSTREAM Capa DOWNSTREAM trp INTERGENIC
2R	8198518	2R_8198518_SNP [dm3] 2R_12311013_SNP [dm6]	G	A	4.690e^-4	0.96	SYNONYMOUS_CODING CG30203 DOWNSTREAM CG17739
3R	10822822	3R_10822822_SNP [dm3] 3R_14997100_SNP [dm6]	T	G	4.698e^-4	0.96	INTERGENIC
2L	6405119	2L_6405119_SNP [dm3] 2L_6405119_SNP [dm6]	C	T	4.703e^-4	0.96	INTRON CG42368
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	4.704e^-4	0.96	INTRON CG5758
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	4.709e^-4	0.96	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	21257774	3R_21257774_SNP [dm3] 3R_25432052_SNP [dm6]	T	G	4.720e^-4	0.96	INTRON Fur1
3R	25722177	3R_25722177_SNP [dm3] 3R_29896455_SNP [dm6]	G	A	4.721e^-4	0.96	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9649024	2L_9649024_SNP [dm3] 2L_9649024_SNP [dm6]	T	C	4.728e^-4	0.96	SYNONYMOUS_CODING Apoltp
3L	23549006	3L_23549006_SNP [dm3] 3L_23555906_SNP [dm6]	G	T	4.738e^-4	0.96	UPSTREAM AGO3 INTRON AGO3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	4.738e^-4	0.96	UTR_3_PRIME dpr3
2L	18108442	2L_18108442_SNP [dm3] 2L_18108442_SNP [dm6]	G	A	4.743e^-4	0.96	INTERGENIC
X	6114570	X_6114570_SNP [dm3] X_6220537_SNP [dm6]	C	A	4.748e^-4	0.96	UTR_5_PRIME Efr INTRON Efr	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	15621877	3R_15621877_SNP [dm3] 3R_19796155_SNP [dm6]	C	T	4.755e^-4	0.96	INTRON bnl	TF binding site mE1_TFBS_cad
X	3957092	X_3957092_SNP [dm3] X_4063059_SNP [dm6]	T	A	4.767e^-4	0.96	INTERGENIC
X	20563774	X_20563774_DEL [dm3] X_20692747_DEL [dm6]	TTCGATCC	T	4.773e^-4	0.96	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	16366469	2R_16366469_SNP [dm3] 2R_20478964_SNP [dm6]	C	T	4.774e^-4	0.96	DOWNSTREAM CG12484 INTERGENIC
2L	7338333	2L_7338333_SNP [dm3] 2L_7338333_SNP [dm6]	G	T	4.775e^-4	0.96	INTRON Wnt6
3R	15082126	3R_15082126_SNP [dm3] 3R_19256404_SNP [dm6]	G	A	4.787e^-4	0.96	UPSTREAM CG14280 INTERGENIC
2R	6825255	2R_6825255_SNP [dm3] 2R_10937750_SNP [dm6]	G	T	4.789e^-4	0.96	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	16723338	X_16723338_SNP [dm3] X_16829305_SNP [dm6]	C	T	4.794e^-4	0.96	INTRON CG13004
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	4.795e^-4	0.96	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2R	15856765	2R_15856765_SNP [dm3] 2R_19969260_SNP [dm6]	C	T	4.796e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6953773	2L_6953773_SNP [dm3] 2L_6953773_SNP [dm6]	C	T	4.796e^-4	0.96	DOWNSTREAM CG13775 INTRON SA
3L	4308579	3L_4308579_SNP [dm3] 3L_4308579_SNP [dm6]	A	T	4.804e^-4	0.96	UPSTREAM dyl INTERGENIC
3R	25924631	3R_25924631_SNP [dm3] 3R_30098909_SNP [dm6]	C	T	4.811e^-4	0.96	UPSTREAM sima INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13873455	X_13873455_SNP [dm3] X_13979422_SNP [dm6]	T	G	4.816e^-4	0.96	INTRON mamo
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	4.816e^-4	0.96	INTRON CG32085
3R	25954998	3R_25954998_SNP [dm3] 3R_30129276_SNP [dm6]	T	A	4.816e^-4	0.96	UPSTREAM Ppi1 DOWNSTREAM CG31029 INTERGENIC	TF binding site mE1_TFBS_cad
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	4.834e^-4	0.96	UPSTREAM CR45406 INTERGENIC
2L	4719449	2L_4719449_SNP [dm3] 2L_4719449_SNP [dm6]	T	C	4.835e^-4	0.96	INTRON CG34351
2L	715066	2L_715066_SNP [dm3] 2L_715066_SNP [dm6]	A	G	4.841e^-4	0.96	UPSTREAM ds EXON CR44988	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11086275	2R_11086275_SNP [dm3] 2R_15198770_SNP [dm6]	A	T	4.843e^-4	0.96	DOWNSTREAM GPHR INTERGENIC
3R	21384476	3R_21384476_DEL [dm3] 3R_25558754_DEL [dm6]	GTTG	G	4.846e^-4	0.96	INTRON msi
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	4.852e^-4	0.96	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
X	16758456	X_16758456_SNP [dm3] X_16864423_SNP [dm6]	T	C	4.856e^-4	0.96	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	4.865e^-4	0.96	UPSTREAM para INTERGENIC
X	14155398	X_14155398_SNP [dm3] X_14261365_SNP [dm6]	C	T	4.868e^-4	0.96	START_GAINED CG1461 UTR_5_PRIME CG1461
2L	7337340	2L_7337340_SNP [dm3] 2L_7337340_SNP [dm6]	G	T	4.892e^-4	0.96	INTRON Wnt6
3L	14016490	3L_14016490_SNP [dm3] 3L_14023390_SNP [dm6]	A	G	4.898e^-4	0.96	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2L	12895961	2L_12895961_SNP [dm3] 2L_12895961_SNP [dm6]	A	C	4.910e^-4	0.96	INTERGENIC
2L	8713316	2L_8713316_SNP [dm3] 2L_8713316_SNP [dm6]	T	C	4.913e^-4	0.96	SYNONYMOUS_CODING raw
3L	19288581	3L_19288581_SNP [dm3] 3L_19295481_SNP [dm6]	G	C	4.915e^-4	0.96	INTRON fal	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	18033666	2R_18033666_SNP [dm3] 2R_22146161_SNP [dm6]	A	C	4.916e^-4	0.96	INTRON a
3R	26002248	3R_26002248_SNP [dm3] 3R_30176526_SNP [dm6]	G	A	4.921e^-4	0.96	SYNONYMOUS_CODING CG1983
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	4.931e^-4	0.96	INTRON fz2	TF binding site mE1_TFBS_Trl
3R	22755779	3R_22755779_SNP [dm3] 3R_26930057_SNP [dm6]	C	T	4.933e^-4	0.96	INTRON sda
2L	12721575	2L_12721575_DEL [dm3] 2L_12721575_DEL [dm6]	AA	A	4.934e^-4	0.96	UPSTREAM MRP INTRON MRP & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
3R	14221089	3R_14221089_SNP [dm3] 3R_18395367_SNP [dm6]	T	A	4.945e^-4	0.96	INTRON Vha100-2
3R	22281125	3R_22281125_SNP [dm3] 3R_26455403_SNP [dm6]	A	T	4.948e^-4	0.96	DOWNSTREAM Pdf & 2 others INTERGENIC
3R	4793774	3R_4793774_SNP [dm3] 3R_8968052_SNP [dm6]	C	T	4.948e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_cad
4	349518	4_349518_SNP [dm3] 4_328892_SNP [dm6]	C	T	4.956e^-4	0.96	UTR_3_PRIME CG32850 & 1 other DOWNSTREAM PMCA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12952688	2R_12952688_SNP [dm3] 2R_17065183_SNP [dm6]	G	A	4.957e^-4	0.96	NON_SYNONYMOUS_CODING CG6967 DOWNSTREAM CG30460	TF binding site mE1_TFBS_sens
2L	12439482	2L_12439482_SNP [dm3] 2L_12439482_SNP [dm6]	T	G	4.963e^-4	0.96	INTRON Elf
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	4.964e^-4	0.96	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8275054	2L_8275054_SNP [dm3] 2L_8275054_SNP [dm6]	T	A	4.967e^-4	0.96	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16230365	2L_16230365_SNP [dm3] 2L_16230365_SNP [dm6]	A	T	4.967e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	4.979e^-4	0.96	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	712457	2L_712457_SNP [dm3] 2L_712457_SNP [dm6]	G	A	4.991e^-4	0.96	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8876181	2R_8876181_SNP [dm3] 2R_12988676_SNP [dm6]	T	C	4.995e^-4	0.96	INTERGENIC
3R	24960104	3R_24960104_SNP [dm3] 3R_29134382_SNP [dm6]	C	T	5.004e^-4	0.96	INTRON Vha100-1
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	5.020e^-4	0.96	UPSTREAM CG33225 INTERGENIC
2R	10301877	2R_10301877_SNP [dm3] 2R_14414372_SNP [dm6]	T	A	5.026e^-4	0.96	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	19351786	2R_19351786_SNP [dm3] 2R_23464263_SNP [dm6]	T	G	5.039e^-4	0.96	INTRON CG43795
3L	17780815	3L_17780815_SNP [dm3] 3L_17787715_SNP [dm6]	A	G	5.051e^-4	0.96	INTERGENIC
2R	7801033	2R_7801033_SNP [dm3] 2R_11913528_SNP [dm6]	G	A	5.067e^-4	0.96	UPSTREAM CG13183 INTERGENIC
3L	14417953	3L_14417953_SNP [dm3] 3L_14424853_SNP [dm6]	A	T	5.068e^-4	0.96	INTRON bbg
3R	24773008	3R_24773008_SNP [dm3] 3R_28947286_SNP [dm6]	C	A	5.074e^-4	0.96	INTRON CG14521
2L	7843018	2L_7843018_SNP [dm3] 2L_7843018_SNP [dm6]	C	G	5.074e^-4	0.96	INTERGENIC
2L	3084823	2L_3084823_SNP [dm3] 2L_3084823_SNP [dm6]	C	G	5.087e^-4	0.96	INTRON toc
X	6496009	X_6496009_SNP [dm3] X_6601976_SNP [dm6]	G	A	5.088e^-4	0.96	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14446084	3L_14446084_SNP [dm3] 3L_14452984_SNP [dm6]	T	G	5.098e^-4	0.96	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	18362145	3L_18362145_SNP [dm3] 3L_18369045_SNP [dm6]	T	C	5.099e^-4	0.96	INTERGENIC
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	5.100e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	892920	3L_892920_SNP [dm3] 3L_892920_SNP [dm6]	C	T	5.102e^-4	0.96	UTR_3_PRIME CG32479
2L	12895960	2L_12895960_SNP [dm3] 2L_12895960_SNP [dm6]	C	A	5.104e^-4	0.96	INTERGENIC
2L	2061429	2L_2061429_SNP [dm3] 2L_2061429_SNP [dm6]	G	T	5.114e^-4	0.96	INTRON dpr3
3R	25750329	3R_25750329_SNP [dm3] 3R_29924607_SNP [dm6]	T	G	5.122e^-4	0.96	UTR_5_PRIME Jon99Cii DOWNSTREAM Jon99Ci
3R	13492332	3R_13492332_SNP [dm3] 3R_17666610_SNP [dm6]	T	G	5.123e^-4	0.96	UPSTREAM CR45045 INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6581670	2L_6581670_SNP [dm3] 2L_6581670_SNP [dm6]	T	A	5.137e^-4	0.96	INTRON CG11319
2L	11443950	2L_11443950_SNP [dm3] 2L_11443950_SNP [dm6]	G	T	5.142e^-4	0.96	INTRON salm
3R	15649178	3R_15649178_SNP [dm3] 3R_19823456_SNP [dm6]	A	T	5.142e^-4	0.96	INTRON bnl
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	5.147e^-4	0.96	INTRON Ncc69
X	1453925	X_1453925_SNP [dm3] X_1559892_SNP [dm6]	A	G	5.150e^-4	0.96	INTRON Mur2B
X	10014443	X_10014443_SNP [dm3] X_10120410_SNP [dm6]	T	A	5.164e^-4	0.96	INTRON RhoU & 1 other
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	5.170e^-4	0.96	DOWNSTREAM CG31785 INTRON CG5758
3L	9947631	3L_9947631_SNP [dm3] 3L_9954531_SNP [dm6]	T	C	5.173e^-4	0.96	INTRON CG34356
2R	8724885	2R_8724885_SNP [dm3] 2R_12837380_SNP [dm6]	C	A	5.178e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6953271	2L_6953271_SNP [dm3] 2L_6953271_SNP [dm6]	T	C	5.178e^-4	0.96	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
2L	8704103	2L_8704103_SNP [dm3] 2L_8704103_SNP [dm6]	C	T	5.183e^-4	0.96	INTRON Hnf4 EXON CR44992
2L	13846614	2L_13846614_SNP [dm3] 2L_13846614_SNP [dm6]	T	G	5.191e^-4	0.96	UPSTREAM CG7916 INTRON CenG1A
3R	25994203	3R_25994203_SNP [dm3] 3R_30168481_SNP [dm6]	T	A	5.193e^-4	0.96	NON_SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24201923	3R_24201923_SNP [dm3] 3R_28376201_SNP [dm6]	T	C	5.212e^-4	0.96	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	19411895	2L_19411895_SNP [dm3] 2L_19411895_SNP [dm6]	C	A	5.219e^-4	0.96	UPSTREAM Pax INTRON Pax
3R	24743357	3R_24743357_SNP [dm3] 3R_28917635_SNP [dm6]	A	T	5.261e^-4	0.96	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	5.262e^-4	0.96	INTERGENIC
3R	22530093	3R_22530093_SNP [dm3] 3R_26704371_SNP [dm6]	T	G	5.270e^-4	0.96	INTRON amon
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	5.273e^-4	0.96	INTRON fas
X	4289569	X_4289569_SNP [dm3] X_4395536_SNP [dm6]	C	T	5.273e^-4	0.96	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18837988	3L_18837988_INS [dm3] 3L_18844888_INS [dm6]	G	GGTACACAATTTG...	5.274e^-4	0.96	INTRON Indy
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	5.274e^-4	0.96	INTRON CG33700
3R	6907762	3R_6907762_SNP [dm3] 3R_11082040_SNP [dm6]	C	T	5.278e^-4	0.96	INTERGENIC
X	19726815	X_19726815_INS [dm3] X_19832782_INS [dm6]	T	TGT	5.283e^-4	0.96	UTR_3_PRIME pico
2R	6534322	2R_6534322_SNP [dm3] 2R_10646817_SNP [dm6]	G	C	5.285e^-4	0.96	INTRON Elp2	TF binding site mE1_TFBS_sens
3L	10838739	3L_10838739_SNP [dm3] 3L_10845639_SNP [dm6]	C	T	5.291e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sens mE1_TFBS_Trl
3R	25762252	3R_25762252_SNP [dm3] 3R_29936530_SNP [dm6]	G	A	5.291e^-4	0.96	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26012055	3R_26012055_SNP [dm3] 3R_30186333_SNP [dm6]	C	T	5.294e^-4	0.96	INTRON CG9747	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	18891617	3L_18891617_SNP [dm3] 3L_18898517_SNP [dm6]	T	C	5.320e^-4	0.96	UPSTREAM RpL26 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	5.329e^-4	0.96	INTERGENIC
2R	20223818	2R_20223818_SNP [dm3] 2R_24336295_SNP [dm6]	C	T	5.331e^-4	0.96	UPSTREAM CR44282 INTERGENIC
2R	1438916	2R_1438916_INS [dm3] 2R_5551411_INS [dm6]	A	AAGATT	5.332e^-4	0.96	INTERGENIC	transposable element FlyBase
3R	26209092	3R_26209092_SNP [dm3] 3R_30383370_SNP [dm6]	T	A	5.336e^-4	0.96	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3470385	3L_3470385_SNP [dm3] 3L_3470385_SNP [dm6]	T	C	5.343e^-4	0.96	SPLICE_SITE_REGION CG14971 INTRON CG14971
3L	11094710	3L_11094710_SNP [dm3] 3L_11101610_SNP [dm6]	C	T	5.345e^-4	0.96	SYNONYMOUS_CODING Elo68beta DOWNSTREAM Elo68alpha
2R	14331781	2R_14331781_SNP [dm3] 2R_18444276_SNP [dm6]	G	T	5.346e^-4	0.96	INTRON slim
3L	7467804	3L_7467804_SNP [dm3] 3L_7474704_SNP [dm6]	C	A	5.357e^-4	0.96	UPSTREAM CG43292 INTERGENIC
2R	8593575	2R_8593575_SNP [dm3] 2R_12706070_SNP [dm6]	G	T	5.361e^-4	0.96	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	5.378e^-4	0.96	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
3R	24744001	3R_24744001_SNP [dm3] 3R_28918279_SNP [dm6]	T	A	5.384e^-4	0.96	INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11317009	3L_11317009_SNP [dm3] 3L_11323909_SNP [dm6]	A	C	5.398e^-4	0.96	UPSTREAM CR44721 DOWNSTREAM CR44723 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25738476	3R_25738476_SNP [dm3] 3R_29912754_SNP [dm6]	A	G	5.399e^-4	0.96	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.171e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03482
In_3R_Mo	0.02028

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	6.9944	0.0303
In_3R_Mo	11.0256	0.004

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1827 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	1.727e^-7	0.324	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	2.216e^-6	0.986	INTERGENIC
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	5.578e^-6	0.986	INTRON psq
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	6.673e^-6	0.986	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	7.274e^-6	0.986	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	7.402e^-6	0.986	INTRON fas
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	8.351e^-6	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	9.134e^-6	0.986	INTRON Spn31A
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	9.277e^-6	0.986	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	9.926e^-6	0.986	INTRON dpr3
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.023e^-5	0.986	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	1.097e^-5	0.986	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	1.147e^-5	0.986	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.150e^-5	0.986	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.188e^-5	0.986	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.188e^-5	0.986	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	1.212e^-5	0.986	INTERGENIC
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	1.302e^-5	0.986	INTRON Ten-a
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	1.350e^-5	0.986	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	1.433e^-5	0.986	INTRON blow	TF binding site mE1_TFBS_chinmo
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	1.613e^-5	0.986	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	1.615e^-5	0.986	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	1.655e^-5	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19054164	X_19054164_SNP [dm3] X_19160131_SNP [dm6]	C	T	1.716e^-5	0.986	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4213164	2L_4213164_SNP [dm3] 2L_4213164_SNP [dm6]	T	C	1.812e^-5	0.986	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	1.913e^-5	0.986	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	1.972e^-5	0.986	DOWNSTREAM CG8086 & 1 other INTRON CG43057
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	2.168e^-5	0.986	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	2.247e^-5	0.986	UPSTREAM jp INTRON jp
3L	4720661	3L_4720661_SNP [dm3] 3L_4720661_SNP [dm6]	A	C	2.344e^-5	0.986	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	2.407e^-5	0.986	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	2.426e^-5	0.986	INTRON Duox
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	2.431e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	2.445e^-5	0.986	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	2.445e^-5	0.986	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	11086275	2R_11086275_SNP [dm3] 2R_15198770_SNP [dm6]	A	T	2.460e^-5	0.986	DOWNSTREAM GPHR INTERGENIC
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.553e^-5	0.986	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	2.637e^-5	0.986	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
2L	3855038	2L_3855038_SNP [dm3] 2L_3855038_SNP [dm6]	A	C	2.749e^-5	0.986	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	2.871e^-5	0.986	INTRON Hnf4 & 1 other
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	2.888e^-5	0.986	INTRON Sh
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	2.933e^-5	0.986	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	2.963e^-5	0.986	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	2.988e^-5	0.986	INTRON Spn31A
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	2.995e^-5	0.986	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	11766632	3L_11766632_SNP [dm3] 3L_11773532_SNP [dm6]	C	A	3.066e^-5	0.986	DOWNSTREAM mir-956 & 2 others INTERGENIC
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	3.104e^-5	0.986	INTRON bbg
2L	9561278	2L_9561278_SNP [dm3] 2L_9561278_SNP [dm6]	C	T	3.144e^-5	0.986	UPSTREAM jp INTRON jp
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	3.184e^-5	0.986	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	3.244e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	3.286e^-5	0.986	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	14608265	3R_14608265_SNP [dm3] 3R_18782543_SNP [dm6]	T	G	3.336e^-5	0.986	INTRON CG7720
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	3.421e^-5	0.986	INTRON bbg
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	3.421e^-5	0.986	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	10088520	2L_10088520_SNP [dm3] 2L_10088520_SNP [dm6]	G	A	3.439e^-5	0.986	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9563147	2L_9563147_SNP [dm3] 2L_9563147_SNP [dm6]	C	G	3.451e^-5	0.986	INTRON jp
3L	11927865	3L_11927865_SNP [dm3] 3L_11934765_SNP [dm6]	C	T	3.583e^-5	0.986	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	3.711e^-5	0.986	INTRON bbg
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	3.902e^-5	0.986	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	4.062e^-5	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	4.066e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	4.068e^-5	0.986	DOWNSTREAM CG5556 INTERGENIC
X	12146582	X_12146582_SNP [dm3] X_12252549_SNP [dm6]	G	A	4.266e^-5	0.986	INTRON Ten-a
2L	9965747	2L_9965747_SNP [dm3] 2L_9965747_SNP [dm6]	C	T	4.287e^-5	0.986	INTRON Dref
3R	20948453	3R_20948453_SNP [dm3] 3R_25122731_SNP [dm6]	G	A	4.314e^-5	0.986	UTR_5_PRIME CG31108 & 1 other UPSTREAM vig2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	4.317e^-5	0.986	INTRON Ten-a
3L	11348360	3L_11348360_SNP [dm3] 3L_11355260_SNP [dm6]	A	G	4.332e^-5	0.986	INTERGENIC
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	4.377e^-5	0.986	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	4.428e^-5	0.986	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2L	18988367	2L_18988367_SNP [dm3] 2L_18988367_SNP [dm6]	A	G	4.489e^-5	0.986	NON_SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13873530	X_13873530_SNP [dm3] X_13979497_SNP [dm6]	T	C	4.726e^-5	0.986	INTRON mamo
3R	25762240	3R_25762240_SNP [dm3] 3R_29936518_SNP [dm6]	G	A	4.752e^-5	0.986	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	4.789e^-5	0.986	INTERGENIC
3L	11927827	3L_11927827_SNP [dm3] 3L_11934727_SNP [dm6]	C	T	4.871e^-5	0.986	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	4643969	2L_4643969_SNP [dm3] 2L_4643969_SNP [dm6]	A	T	4.898e^-5	0.986	NON_SYNONYMOUS_CODING CG15635
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	4.948e^-5	0.986	INTRON CG33700
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	5.178e^-5	0.986	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	5.234e^-5	0.986	INTRON HDAC4
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	5.274e^-5	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	5.274e^-5	0.986	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	9562350	2L_9562350_SNP [dm3] 2L_9562350_SNP [dm6]	G	A	5.304e^-5	0.986	INTRON jp
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	5.387e^-5	0.986	INTERGENIC
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	5.446e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	5.446e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	5.446e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	5.446e^-5	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	8087849	2L_8087849_SNP [dm3] 2L_8087849_SNP [dm6]	A	G	5.530e^-5	0.986	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	9564272	2L_9564272_SNP [dm3] 2L_9564272_SNP [dm6]	G	A	5.540e^-5	0.986	INTRON jp
2R	8153986	2R_8153986_SNP [dm3] 2R_12266481_SNP [dm6]	G	T	5.631e^-5	0.986	INTRON Cam
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	5.670e^-5	0.986	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14930722	3L_14930722_SNP [dm3] 3L_14937622_SNP [dm6]	G	A	5.714e^-5	0.986	INTRON DCX-EMAP
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	5.736e^-5	0.986	INTERGENIC
2L	9564765	2L_9564765_INS [dm3] 2L_9564765_INS [dm6]	T	TTAGCTACACA...	5.899e^-5	0.986	INTRON jp
2L	9564767	2L_9564767_DEL [dm3] 2L_9564767_DEL [dm6]	GTTAAATTACAATAC...	G	5.899e^-5	0.986	INTRON jp
X	13873470	X_13873470_SNP [dm3] X_13979437_SNP [dm6]	C	T	5.910e^-5	0.986	INTRON mamo
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	5.925e^-5	0.986	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21570682	3R_21570682_SNP [dm3] 3R_25744960_SNP [dm6]	C	A	5.968e^-5	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	6.117e^-5	0.986	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	6.132e^-5	0.986	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	6.168e^-5	0.986	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2L	18108442	2L_18108442_SNP [dm3] 2L_18108442_SNP [dm6]	G	A	6.228e^-5	0.986	INTERGENIC
3R	23478199	3R_23478199_SNP [dm3] 3R_27652477_SNP [dm6]	C	A	6.229e^-5	0.986	UPSTREAM RpS10a INTRON tau	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	6.265e^-5	0.986	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6530439	3R_6530439_SNP [dm3] 3R_10704717_SNP [dm6]	A	T	6.266e^-5	0.986	SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	6.290e^-5	0.986	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	9561194	2L_9561194_DEL [dm3] 2L_9561194_DEL [dm6]	TCGCAAAGT	T	6.324e^-5	0.986	UPSTREAM jp INTRON jp
2L	9561223	2L_9561223_SNP [dm3] 2L_9561223_SNP [dm6]	C	A	6.324e^-5	0.986	UPSTREAM jp INTRON jp
2R	6981077	2R_6981077_SNP [dm3] 2R_11093572_SNP [dm6]	T	C	6.518e^-5	0.986	INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	6.533e^-5	0.986	DOWNSTREAM inv INTERGENIC
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	6.573e^-5	0.986	UPSTREAM CG44476 INTERGENIC
2L	9561128	2L_9561128_SNP [dm3] 2L_9561128_SNP [dm6]	T	C	6.583e^-5	0.986	UPSTREAM jp INTRON jp
X	13873455	X_13873455_SNP [dm3] X_13979422_SNP [dm6]	T	G	6.590e^-5	0.986	INTRON mamo
2L	9562235	2L_9562235_SNP [dm3] 2L_9562235_SNP [dm6]	A	T	6.863e^-5	0.986	INTRON jp
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	7.024e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	7.059e^-5	0.986	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	18972604	2L_18972604_SNP [dm3] 2L_18972604_SNP [dm6]	G	A	7.263e^-5	0.986	SPLICE_SITE_REGION CG10639 SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	18972610	2L_18972610_SNP [dm3] 2L_18972610_SNP [dm6]	T	C	7.263e^-5	0.986	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	7.285e^-5	0.986	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	7.357e^-5	0.986	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2R	9453385	2R_9453385_SNP [dm3] 2R_13565880_SNP [dm6]	A	C	7.401e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	18149841	2L_18149841_SNP [dm3] 2L_18149841_SNP [dm6]	G	A	7.402e^-5	0.986	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	7.412e^-5	0.986	INTERGENIC
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	7.418e^-5	0.986	INTERGENIC
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	7.448e^-5	0.986	INTRON Sh
3L	12503800	3L_12503800_SNP [dm3] 3L_12510700_SNP [dm6]	A	C	7.579e^-5	0.986	NON_SYNONYMOUS_CODING sti
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	7.763e^-5	0.986	INTRON FMRFaR
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	7.784e^-5	0.986	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	18972596	2L_18972596_SNP [dm3] 2L_18972596_SNP [dm6]	A	G	7.889e^-5	0.986	SPLICE_SITE_REGION CG10639 DOWNSTREAM Tango6 INTRON CG10639	TF binding site mE1_TFBS_cad
2R	9687752	2R_9687752_SNP [dm3] 2R_13800247_SNP [dm6]	C	T	7.917e^-5	0.986	INTRON Cpr50Cb
3L	2515493	3L_2515493_SNP [dm3] 3L_2515493_SNP [dm6]	C	T	7.985e^-5	0.986	INTRON Spn
2L	9561442	2L_9561442_SNP [dm3] 2L_9561442_SNP [dm6]	C	A	8.020e^-5	0.986	INTRON jp
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	8.055e^-5	0.986	INTRON CG9850
X	21886733	X_21886733_SNP [dm3] X_22484897_SNP [dm6]	A	T	8.171e^-5	0.986	INTRON Cp110	transposable element FlyBase
3L	11766616	3L_11766616_SNP [dm3] 3L_11773516_SNP [dm6]	A	T	8.232e^-5	0.986	DOWNSTREAM mir-956 & 2 others INTERGENIC
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	8.262e^-5	0.986	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	8.268e^-5	0.986	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	8.344e^-5	0.986	INTRON Eip63E
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	8.418e^-5	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	9556526	2L_9556526_SNP [dm3] 2L_9556526_SNP [dm6]	G	A	8.476e^-5	0.986	INTRON jp
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	8.619e^-5	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	8.639e^-5	0.986	INTRON CG31637
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	8.662e^-5	0.986	UTR_3_PRIME CG31030
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	8.714e^-5	0.986	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	8.754e^-5	0.986	UPSTREAM CG15865 INTRON r
2L	18099946	2L_18099946_SNP [dm3] 2L_18099946_SNP [dm6]	C	A	9.015e^-5	0.986	INTERGENIC
3R	15650994	3R_15650994_SNP [dm3] 3R_19825272_SNP [dm6]	A	C	9.103e^-5	0.986	INTRON bnl
3L	24020658	3L_24020658_SNP [dm3] 3L_24027558_SNP [dm6]	C	A	9.120e^-5	0.986	UPSTREAM CG40045 INTERGENIC
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	9.275e^-5	0.986	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4813097	2L_4813097_SNP [dm3] 2L_4813097_SNP [dm6]	C	T	9.386e^-5	0.986	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	9.596e^-5	0.986	INTRON Sh
3L	922601	3L_922601_SNP [dm3] 3L_922601_SNP [dm6]	C	T	9.770e^-5	0.986	INTRON Glut1
3R	6530437	3R_6530437_SNP [dm3] 3R_10704715_SNP [dm6]	T	C	9.819e^-5	0.986	NON_SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467	TF binding site mE1_TFBS_sens
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	9.827e^-5	0.986	INTRON Ten-a
X	17911850	X_17911850_SNP [dm3] X_18017817_SNP [dm6]	A	G	9.898e^-5	0.986	INTRON Sh
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	9.903e^-5	0.986	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	1.003e^-4	0.986	INTRON CG1461
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	1.012e^-4	0.986	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	1.020e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7812848	2R_7812848_SNP [dm3] 2R_11925343_SNP [dm6]	A	G	1.028e^-4	0.986	INTERGENIC
3R	14046639	3R_14046639_SNP [dm3] 3R_18220917_SNP [dm6]	G	T	1.029e^-4	0.986	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9831026	2L_9831026_DEL [dm3] 2L_9831026_DEL [dm6]	AA	A	1.033e^-4	0.986	INTRON nAChRalpha6
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	1.049e^-4	0.986	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	9190781	3L_9190781_SNP [dm3] 3L_9197681_SNP [dm6]	C	A	1.059e^-4	0.986	INTERGENIC
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	1.066e^-4	0.986	INTRON cpo
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	1.091e^-4	0.986	INTRON CG44153
3L	5601957	3L_5601957_DEL [dm3] 3L_5608857_DEL [dm6]	CGCCATCATCATCGTCTTTT...	C	1.092e^-4	0.986	UPSTREAM Eaf6 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	4991146	3R_4991146_SNP [dm3] 3R_9165424_SNP [dm6]	T	A	1.095e^-4	0.986	INTRON pum
2R	10301877	2R_10301877_SNP [dm3] 2R_14414372_SNP [dm6]	T	A	1.098e^-4	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	11698588	3L_11698588_SNP [dm3] 3L_11705488_SNP [dm6]	G	C	1.100e^-4	0.986	INTRON CG11658
2L	10073097	2L_10073097_SNP [dm3] 2L_10073097_SNP [dm6]	C	A	1.105e^-4	0.986	INTRON CG44153	TF binding site mE1_TFBS_inv
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	1.107e^-4	0.986	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11333214	2R_11333214_SNP [dm3] 2R_15445709_SNP [dm6]	G	A	1.115e^-4	0.986	INTRON CG43729
3L	2080270	3L_2080270_SNP [dm3] 3L_2080270_SNP [dm6]	G	A	1.118e^-4	0.986	SYNONYMOUS_CODING sls INTRON sls
2R	6556027	2R_6556027_SNP [dm3] 2R_10668522_SNP [dm6]	T	C	1.124e^-4	0.986	INTERGENIC
3L	14016672	3L_14016672_SNP [dm3] 3L_14023572_SNP [dm6]	A	T	1.132e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	14016679	3L_14016679_SNP [dm3] 3L_14023579_SNP [dm6]	T	A	1.132e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
X	14461944	X_14461944_INS [dm3] X_14567911_INS [dm6]	T	TAT	1.137e^-4	0.986	INTERGENIC
3L	9862047	3L_9862047_SNP [dm3] 3L_9868947_SNP [dm6]	T	G	1.144e^-4	0.986	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	1.154e^-4	0.986	INTERGENIC
3L	4306390	3L_4306390_SNP [dm3] 3L_4306390_SNP [dm6]	A	T	1.176e^-4	0.986	INTRON dyl
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	1.179e^-4	0.986	INTRON dpr3
2L	15979183	2L_15979183_SNP [dm3] 2L_15979183_SNP [dm6]	C	T	1.180e^-4	0.986	UPSTREAM CG10839 INTERGENIC
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	1.181e^-4	0.986	INTRON kibra
3L	12747463	3L_12747463_SNP [dm3] 3L_12754363_SNP [dm6]	G	A	1.183e^-4	0.986	UPSTREAM CG32113 DOWNSTREAM CG10984 INTRON CG10973	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	1.183e^-4	0.986	INTRON lilli
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	1.193e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7994516	3L_7994516_SNP [dm3] 3L_8001416_SNP [dm6]	C	A	1.196e^-4	0.986	INTRON nmo
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	1.199e^-4	0.986	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	1.206e^-4	0.986	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17154780	3R_17154780_SNP [dm3] 3R_21329058_SNP [dm6]	G	C	1.207e^-4	0.986	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
2L	6237862	2L_6237862_SNP [dm3] 2L_6237862_SNP [dm6]	G	A	1.210e^-4	0.986	INTERGENIC
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	1.211e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	1.214e^-4	0.986	UPSTREAM CG5758 INTERGENIC
3L	14428794	3L_14428794_SNP [dm3] 3L_14435694_SNP [dm6]	C	A	1.221e^-4	0.986	INTRON bbg
3L	14428796	3L_14428796_INS [dm3] 3L_14435696_INS [dm6]	T	AG	1.221e^-4	0.986	INTRON bbg
2R	8914992	2R_8914992_SNP [dm3] 2R_13027487_SNP [dm6]	T	C	1.223e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14016472	3L_14016472_SNP [dm3] 3L_14023372_SNP [dm6]	T	C	1.231e^-4	0.986	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	1.231e^-4	0.986	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	12146592	X_12146592_DEL [dm3] X_12252559_DEL [dm6]	GGGAGGGAGCG...	G	1.241e^-4	0.986	INTRON Ten-a
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	1.243e^-4	0.986	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
X	2379381	X_2379381_SNP [dm3] X_2485348_SNP [dm6]	A	C	1.243e^-4	0.986	INTRON trol
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	1.248e^-4	0.986	INTRON trol
2R	7410324	2R_7410324_INS [dm3] 2R_11522819_INS [dm6]	T	TAATT	1.253e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	14912751	2R_14912751_SNP [dm3] 2R_19025246_SNP [dm6]	G	C	1.254e^-4	0.986	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3559739	3L_3559739_SNP [dm3] 3L_3559739_SNP [dm6]	A	G	1.257e^-4	0.986	INTRON Eip63E	TF binding site mE1_TFBS_bab1
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	1.258e^-4	0.986	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.263e^-4	0.986	INTRON CG7120
3R	25548762	3R_25548762_SNP [dm3] 3R_29723040_SNP [dm6]	A	C	1.267e^-4	0.986	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	1.268e^-4	0.986	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6458684	2L_6458684_SNP [dm3] 2L_6458684_SNP [dm6]	T	A	1.275e^-4	0.986	UTR_3_PRIME frj DOWNSTREAM CG16947
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	1.276e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	1.296e^-4	0.986	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2L	19371701	2L_19371701_SNP [dm3] 2L_19371701_SNP [dm6]	C	T	1.307e^-4	0.986	INTRON CG17349
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	1.309e^-4	0.986	INTRON Mp
X	6078608	X_6078608_SNP [dm3] X_6184575_SNP [dm6]	G	C	1.324e^-4	0.986	INTRON Ca-alpha1T
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	1.339e^-4	0.986	UPSTREAM CG33225 INTERGENIC
2L	9562250	2L_9562250_SNP [dm3] 2L_9562250_SNP [dm6]	G	A	1.342e^-4	0.986	INTRON jp
2L	15321695	2L_15321695_SNP [dm3] 2L_15321695_SNP [dm6]	C	T	1.343e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	11663799	3L_11663799_DEL [dm3] 3L_11670699_DEL [dm6]	AA	A	1.356e^-4	0.986	INTRON CG32085
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	1.358e^-4	0.986	INTRON Sema-2b
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	1.361e^-4	0.986	INTRON nAChRalpha6
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	1.371e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1598645	2L_1598645_SNP [dm3] 2L_1598645_SNP [dm6]	C	G	1.374e^-4	0.986	INTRON haf & 1 other
3L	8673595	3L_8673595_SNP [dm3] 3L_8680495_SNP [dm6]	C	A	1.375e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	24502653	3L_24502653_SNP [dm3] 3L_24509553_SNP [dm6]	T	C	1.377e^-4	0.986	INTERGENIC
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	1.380e^-4	0.986	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15987820	2R_15987820_SNP [dm3] 2R_20100315_SNP [dm6]	G	C	1.398e^-4	0.986	INTERGENIC
2R	20489173	2R_20489173_SNP [dm3] 2R_24601650_SNP [dm6]	A	T	1.398e^-4	0.986	UTR_3_PRIME CG3548 UPSTREAM CG3565	TF binding site mE1_TFBS_chinmo
2L	15734576	2L_15734576_SNP [dm3] 2L_15734576_SNP [dm6]	C	A	1.401e^-4	0.986	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	7837538	2R_7837538_SNP [dm3] 2R_11950033_SNP [dm6]	C	T	1.405e^-4	0.986	INTRON CG13188
3L	14016664	3L_14016664_SNP [dm3] 3L_14023564_SNP [dm6]	T	A	1.412e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	14016666	3L_14016666_SNP [dm3] 3L_14023566_SNP [dm6]	G	A	1.412e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	17048664	3L_17048664_SNP [dm3] 3L_17055564_SNP [dm6]	T	G	1.420e^-4	0.986	UPSTREAM CG7724 DOWNSTREAM rogdi INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	14016490	3L_14016490_SNP [dm3] 3L_14023390_SNP [dm6]	A	G	1.435e^-4	0.986	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	1.442e^-4	0.986	UPSTREAM CG8997 & 1 other INTRON CenG1A
3R	21570647	3R_21570647_SNP [dm3] 3R_25744925_SNP [dm6]	A	T	1.444e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	1.445e^-4	0.986	INTERGENIC
3L	5982222	3L_5982222_SNP [dm3] 3L_5989122_SNP [dm6]	C	T	1.447e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_sens
X	4530158	X_4530158_SNP [dm3] X_4636125_SNP [dm6]	A	C	1.447e^-4	0.986	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14976110	3R_14976110_SNP [dm3] 3R_19150388_SNP [dm6]	G	A	1.453e^-4	0.986	DOWNSTREAM CR44107 INTRON CG5835
X	1453165	X_1453165_SNP [dm3] X_1559132_SNP [dm6]	A	T	1.458e^-4	0.986	UPSTREAM snmRNA:400 INTRON Mur2B
2L	4813088	2L_4813088_SNP [dm3] 2L_4813088_SNP [dm6]	A	C	1.459e^-4	0.986	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	10139052	3R_10139052_SNP [dm3] 3R_14313330_SNP [dm6]	C	T	1.459e^-4	0.986	SYNONYMOUS_CODING CG31321
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	1.459e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6497807	2L_6497807_SNP [dm3] 2L_6497807_SNP [dm6]	G	A	1.469e^-4	0.986	SYNONYMOUS_CODING CG9550 UPSTREAM CG31637 DOWNSTREAM CG31638
3L	15116083	3L_15116083_SNP [dm3] 3L_15122983_SNP [dm6]	G	A	1.471e^-4	0.986	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
3L	9862075	3L_9862075_SNP [dm3] 3L_9868975_SNP [dm6]	C	A	1.481e^-4	0.986	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4585943	X_4585943_SNP [dm3] X_4691910_SNP [dm6]	G	A	1.484e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	1.503e^-4	0.986	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	1.513e^-4	0.986	INTERGENIC
2L	599421	2L_599421_SNP [dm3] 2L_599421_SNP [dm6]	T	C	1.514e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	1.521e^-4	0.986	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	9871621	2L_9871621_SNP [dm3] 2L_9871621_SNP [dm6]	G	C	1.526e^-4	0.986	INTRON nAChRalpha6
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	1.530e^-4	0.986	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	18645711	X_18645711_SNP [dm3] X_18751678_SNP [dm6]	A	G	1.559e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19552357	3R_19552357_SNP [dm3] 3R_23726635_SNP [dm6]	T	G	1.564e^-4	0.986	INTRON CG10365
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	1.564e^-4	0.986	DOWNSTREAM CG33460 INTRON CG33461
2R	15987709	2R_15987709_SNP [dm3] 2R_20100204_SNP [dm6]	T	A	1.567e^-4	0.986	INTERGENIC
3L	11348354	3L_11348354_SNP [dm3] 3L_11355254_SNP [dm6]	C	G	1.573e^-4	0.986	INTERGENIC
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	1.576e^-4	0.986	SYNONYMOUS_CODING CG15210 INTRON sbr
3L	14428787	3L_14428787_SNP [dm3] 3L_14435687_SNP [dm6]	A	C	1.588e^-4	0.986	INTRON bbg
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	1.590e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	1.597e^-4	0.986	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	4585945	X_4585945_SNP [dm3] X_4691912_SNP [dm6]	C	T	1.618e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	1.618e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2R	7837024	2R_7837024_SNP [dm3] 2R_11949519_SNP [dm6]	G	C	1.621e^-4	0.986	INTRON CG13188
2L	18985622	2L_18985622_SNP [dm3] 2L_18985622_SNP [dm6]	A	C	1.623e^-4	0.986	INTRON Swip-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	902040	2L_902040_SNP [dm3] 2L_902040_SNP [dm6]	T	A	1.624e^-4	0.986	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8705308	2L_8705308_SNP [dm3] 2L_8705308_SNP [dm6]	G	A	1.627e^-4	0.986	UPSTREAM CG9314 INTRON Hnf4 EXON CR44992	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	1.627e^-4	0.986	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
3R	25738308	3R_25738308_SNP [dm3] 3R_29912586_SNP [dm6]	T	C	1.633e^-4	0.986	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
2L	10089177	2L_10089177_SNP [dm3] 2L_10089177_SNP [dm6]	T	C	1.635e^-4	0.986	INTRON CG44153
2L	9564189	2L_9564189_SNP [dm3] 2L_9564189_SNP [dm6]	T	C	1.652e^-4	0.986	INTRON jp
3L	16961315	3L_16961315_SNP [dm3] 3L_16968215_SNP [dm6]	C	G	1.656e^-4	0.986	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
X	15673819	X_15673819_SNP [dm3] X_15779786_SNP [dm6]	T	G	1.670e^-4	0.986	NON_SYNONYMOUS_CODING CG43673 DOWNSTREAM Efhc1.1
2R	15987695	2R_15987695_SNP [dm3] 2R_20100190_SNP [dm6]	C	T	1.688e^-4	0.986	INTERGENIC
X	1453233	X_1453233_SNP [dm3] X_1559200_SNP [dm6]	A	T	1.694e^-4	0.986	UPSTREAM snmRNA:400 INTRON Mur2B
3R	14265909	3R_14265909_SNP [dm3] 3R_18440187_SNP [dm6]	C	G	1.699e^-4	0.986	INTRON fru
X	5490192	X_5490192_SNP [dm3] X_5596159_SNP [dm6]	T	C	1.699e^-4	0.986	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	1.702e^-4	0.986	INTRON beat-VII
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.710e^-4	0.986	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2822075	2L_2822075_SNP [dm3] 2L_2822075_SNP [dm6]	T	A	1.716e^-4	0.986	INTRON Duox
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	1.733e^-4	0.986	INTERGENIC
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	1.737e^-4	0.986	INTRON CG43729
3L	14016649	3L_14016649_SNP [dm3] 3L_14023549_SNP [dm6]	T	G	1.740e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
2L	19223729	2L_19223729_SNP [dm3] 2L_19223729_SNP [dm6]	G	A	1.743e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11659237	2R_11659237_SNP [dm3] 2R_15771732_SNP [dm6]	T	C	1.750e^-4	0.986	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
X	6078371	X_6078371_DEL [dm3] X_6184338_DEL [dm6]	AA	A	1.753e^-4	0.986	INTRON Ca-alpha1T
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	1.753e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	1122033	2L_1122033_SNP [dm3] 2L_1122033_SNP [dm6]	A	C	1.760e^-4	0.986	INTRON Pino
3L	11854273	3L_11854273_SNP [dm3] 3L_11861173_SNP [dm6]	C	T	1.765e^-4	0.986	INTRON CG44837
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	1.774e^-4	0.986	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	1.778e^-4	0.986	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16129464	2L_16129464_SNP [dm3] 2L_16129464_SNP [dm6]	T	A	1.780e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_inv
X	6078425	X_6078425_SNP [dm3] X_6184392_SNP [dm6]	G	A	1.782e^-4	0.986	INTRON Ca-alpha1T
2L	9562873	2L_9562873_SNP [dm3] 2L_9562873_SNP [dm6]	T	A	1.784e^-4	0.986	INTRON jp
3R	15621877	3R_15621877_SNP [dm3] 3R_19796155_SNP [dm6]	C	T	1.785e^-4	0.986	INTRON bnl	TF binding site mE1_TFBS_cad
2L	9570169	2L_9570169_SNP [dm3] 2L_9570169_SNP [dm6]	A	G	1.786e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22019690	X_22019690_INS [dm3] X_22617854_INS [dm6]	T	TAGA	1.792e^-4	0.986	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7891310	3L_7891310_SNP [dm3] 3L_7898210_SNP [dm6]	A	G	1.794e^-4	0.986	SYNONYMOUS_CODING pbl
X	12146757	X_12146757_SNP [dm3] X_12252724_SNP [dm6]	G	A	1.804e^-4	0.986	INTRON Ten-a
3L	14428789	3L_14428789_SNP [dm3] 3L_14435689_SNP [dm6]	A	C	1.815e^-4	0.986	INTRON bbg
3L	13040861	3L_13040861_SNP [dm3] 3L_13047761_SNP [dm6]	T	C	1.845e^-4	0.986	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	2326700	X_2326700_SNP [dm3] X_2432667_SNP [dm6]	T	C	1.846e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	14086585	3R_14086585_SNP [dm3] 3R_18260863_SNP [dm6]	T	C	1.854e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5428994	3L_5428994_DEL [dm3] 3L_5435894_DEL [dm6]	CTCAAT	C	1.891e^-4	0.986	UPSTREAM CG34391 INTRON CG34391
2L	20317282	2L_20317282_SNP [dm3] 2L_20317282_SNP [dm6]	G	T	1.909e^-4	0.986	INTRON spir & 1 other
2L	15321674	2L_15321674_SNP [dm3] 2L_15321674_SNP [dm6]	A	T	1.911e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7436184	2L_7436184_SNP [dm3] 2L_7436184_SNP [dm6]	T	A	1.912e^-4	0.986	INTERGENIC
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	1.912e^-4	0.986	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	1.913e^-4	0.986	INTRON CG43729
2R	18039551	2R_18039551_SNP [dm3] 2R_22152046_SNP [dm6]	G	T	1.938e^-4	0.986	INTRON a
2L	9562984	2L_9562984_SNP [dm3] 2L_9562984_SNP [dm6]	G	A	1.942e^-4	0.986	INTRON jp
2L	9562988	2L_9562988_SNP [dm3] 2L_9562988_SNP [dm6]	G	T	1.942e^-4	0.986	INTRON jp
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	1.943e^-4	0.986	INTRON a
2L	9564637	2L_9564637_SNP [dm3] 2L_9564637_SNP [dm6]	A	T	1.956e^-4	0.986	INTRON jp
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	1.981e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	19232622	2L_19232622_SNP [dm3] 2L_19232622_SNP [dm6]	A	G	2.000e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	2.001e^-4	0.986	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7485024	3L_7485024_SNP [dm3] 3L_7491924_SNP [dm6]	G	A	2.004e^-4	0.986	NON_SYNONYMOUS_CODING Cyp316a1
2L	9363152	2L_9363152_SNP [dm3] 2L_9363152_SNP [dm6]	A	T	2.019e^-4	0.986	INTERGENIC
X	6078452	X_6078452_SNP [dm3] X_6184419_SNP [dm6]	G	A	2.020e^-4	0.986	INTRON Ca-alpha1T
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	2.035e^-4	0.986	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	2.039e^-4	0.986	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	893221	3L_893221_SNP [dm3] 3L_893221_SNP [dm6]	T	A	2.042e^-4	0.986	UTR_3_PRIME CG32479
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	2.044e^-4	0.986	DOWNSTREAM Bace INTRON Dh31
X	17240830	X_17240830_SNP [dm3] X_17346797_SNP [dm6]	T	A	2.049e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sbb
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	2.056e^-4	0.986	INTRON Eip63E
X	1453997	X_1453997_SNP [dm3] X_1559964_SNP [dm6]	G	T	2.058e^-4	0.986	INTRON Mur2B
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	2.059e^-4	0.986	INTERGENIC
2R	15025512	2R_15025512_SNP [dm3] 2R_19138007_SNP [dm6]	T	A	2.075e^-4	0.986	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	6078339	X_6078339_SNP [dm3] X_6184306_SNP [dm6]	C	T	2.092e^-4	0.986	INTRON Ca-alpha1T
3L	23255363	3L_23255363_SNP [dm3] 3L_23262263_SNP [dm6]	T	A	2.095e^-4	0.986	INTRON nAChRalpha4
3R	19048246	3R_19048246_SNP [dm3] 3R_23222524_SNP [dm6]	A	C	2.103e^-4	0.986	UPSTREAM cnc INTRON cnc
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	2.104e^-4	0.986	UPSTREAM para INTERGENIC
3L	11766718	3L_11766718_SNP [dm3] 3L_11773618_SNP [dm6]	A	G	2.104e^-4	0.986	DOWNSTREAM mir-956 & 2 others INTERGENIC
2R	10301988	2R_10301988_SNP [dm3] 2R_14414483_SNP [dm6]	A	G	2.105e^-4	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	2.112e^-4	0.986	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	2061137	2L_2061137_SNP [dm3] 2L_2061137_SNP [dm6]	G	T	2.113e^-4	0.986	INTRON dpr3
2L	20318752	2L_20318752_SNP [dm3] 2L_20318752_SNP [dm6]	G	C	2.121e^-4	0.986	INTRON spir
2L	9570147	2L_9570147_INS [dm3] 2L_9570147_INS [dm6]	A	AC	2.126e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12467848	2L_12467848_SNP [dm3] 2L_12467848_SNP [dm6]	C	T	2.131e^-4	0.986	INTRON bun	TF binding site mE1_TFBS_kn
3L	9862051	3L_9862051_SNP [dm3] 3L_9868951_SNP [dm6]	T	A	2.131e^-4	0.986	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	9862058	3L_9862058_SNP [dm3] 3L_9868958_SNP [dm6]	T	C	2.131e^-4	0.986	INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	2.146e^-4	0.986	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
X	14156606	X_14156606_SNP [dm3] X_14262573_SNP [dm6]	T	C	2.154e^-4	0.986	INTRON CG1461
3R	18341500	3R_18341500_SNP [dm3] 3R_22515778_SNP [dm6]	C	A	2.158e^-4	0.986	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
X	10014440	X_10014440_SNP [dm3] X_10120407_SNP [dm6]	T	C	2.166e^-4	0.986	INTRON RhoU & 1 other
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	2.168e^-4	0.986	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
2L	16886535	2L_16886535_SNP [dm3] 2L_16886535_SNP [dm6]	T	C	2.174e^-4	0.986	DOWNSTREAM CG6115 & 2 others INTERGENIC
2L	9556615	2L_9556615_SNP [dm3] 2L_9556615_SNP [dm6]	C	T	2.175e^-4	0.986	INTRON jp
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	2.176e^-4	0.986	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15899966	2R_15899966_DEL [dm3] 2R_20012461_DEL [dm6]	TGG	T	2.182e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_run
2L	9831024	2L_9831024_SNP [dm3] 2L_9831024_SNP [dm6]	T	G	2.192e^-4	0.986	INTRON nAChRalpha6
X	4584116	X_4584116_INS [dm3] X_4690083_INS [dm6]	A	AA	2.196e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	2.201e^-4	0.986	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	11412367	3L_11412367_SNP [dm3] 3L_11419267_SNP [dm6]	T	G	2.203e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11412379	3L_11412379_SNP [dm3] 3L_11419279_SNP [dm6]	G	A	2.203e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12028341	3L_12028341_SNP [dm3] 3L_12035241_SNP [dm6]	G	A	2.204e^-4	0.986	INTRON rols	TF binding site BDTNP1_TFBS_twi
X	18038349	X_18038349_SNP [dm3] X_18144316_SNP [dm6]	T	A	2.204e^-4	0.986	INTERGENIC
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	2.206e^-4	0.986	SYNONYMOUS_CODING CG32119 INTRON caps
2L	12692575	2L_12692575_SNP [dm3] 2L_12692575_SNP [dm6]	A	T	2.213e^-4	0.986	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	2.214e^-4	0.986	UTR_3_PRIME Sema-2a
2R	11333645	2R_11333645_SNP [dm3] 2R_15446140_SNP [dm6]	G	A	2.240e^-4	0.986	INTRON CG43729
2L	19289931	2L_19289931_SNP [dm3] 2L_19289931_SNP [dm6]	T	A	2.244e^-4	0.986	INTERGENIC
2R	6681119	2R_6681119_SNP [dm3] 2R_10793614_SNP [dm6]	A	G	2.255e^-4	0.986	DOWNSTREAM mthl13 INTRON CG33144
2R	11659189	2R_11659189_SNP [dm3] 2R_15771684_SNP [dm6]	A	G	2.257e^-4	0.986	INTRON Zasp52	TF binding site mE1_TFBS_chinmo
3L	11771271	3L_11771271_SNP [dm3] 3L_11778171_SNP [dm6]	C	T	2.257e^-4	0.986	INTRON Pi3K68D & 1 other	TF binding site mE1_TFBS_cad
2L	12235421	2L_12235421_SNP [dm3] 2L_12235421_SNP [dm6]	G	T	2.261e^-4	0.986	INTRON aret
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	2.261e^-4	0.986	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	2.263e^-4	0.986	UTR_3_PRIME Sema-2a
2L	16573588	2L_16573588_SNP [dm3] 2L_16573588_SNP [dm6]	G	T	2.273e^-4	0.986	INTRON CG42389
3R	24677363	3R_24677363_SNP [dm3] 3R_28851641_SNP [dm6]	C	T	2.273e^-4	0.986	INTRON spg
X	7630641	X_7630641_SNP [dm3] X_7736608_SNP [dm6]	C	T	2.275e^-4	0.986	UTR_3_PRIME Rab39 UPSTREAM Tom40 DOWNSTREAM Rab39	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	4585372	X_4585372_SNP [dm3] X_4691339_SNP [dm6]	C	G	2.277e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13494351	3R_13494351_SNP [dm3] 3R_17668629_SNP [dm6]	G	T	2.277e^-4	0.986	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
3R	13494357	3R_13494357_SNP [dm3] 3R_17668635_SNP [dm6]	T	A	2.277e^-4	0.986	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	2.291e^-4	0.986	INTRON CG43729
2L	5897520	2L_5897520_SNP [dm3] 2L_5897520_SNP [dm6]	C	A	2.295e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14016621	3L_14016621_SNP [dm3] 3L_14023521_SNP [dm6]	T	C	2.305e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	2.306e^-4	0.986	SYNONYMOUS_CODING CG9747
X	14461959	X_14461959_DEL [dm3] X_14567926_DEL [dm6]	ATCA	A	2.314e^-4	0.986	INTERGENIC
X	18625912	X_18625912_SNP [dm3] X_18731879_SNP [dm6]	T	C	2.315e^-4	0.986	UPSTREAM CR45512 & 1 other INTERGENIC
2L	1598680	2L_1598680_SNP [dm3] 2L_1598680_SNP [dm6]	C	A	2.318e^-4	0.986	INTRON haf & 1 other
3L	16964262	3L_16964262_SNP [dm3] 3L_16971162_SNP [dm6]	C	A	2.320e^-4	0.986	INTRON Exn
2L	9570373	2L_9570373_SNP [dm3] 2L_9570373_SNP [dm6]	A	G	2.325e^-4	0.986	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	2.330e^-4	0.986	SYNONYMOUS_CODING S-Lap2
2R	7813342	2R_7813342_SNP [dm3] 2R_11925837_SNP [dm6]	C	T	2.337e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	619713	2L_619713_SNP [dm3] 2L_619713_SNP [dm6]	T	C	2.339e^-4	0.986	DOWNSTREAM lectin-21Cb INTERGENIC
3L	14016633	3L_14016633_SNP [dm3] 3L_14023533_SNP [dm6]	A	T	2.341e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3L	14016643	3L_14016643_SNP [dm3] 3L_14023543_SNP [dm6]	G	A	2.341e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	2.342e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	2.345e^-4	0.986	UPSTREAM para INTERGENIC
3L	14016648	3L_14016648_SNP [dm3] 3L_14023548_SNP [dm6]	A	G	2.352e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	2.354e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5589426	3L_5589426_SNP [dm3] 3L_5596326_SNP [dm6]	G	A	2.373e^-4	0.986	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2379314	X_2379314_SNP [dm3] X_2485281_SNP [dm6]	C	T	2.375e^-4	0.986	INTRON trol
3R	13494086	3R_13494086_SNP [dm3] 3R_17668364_SNP [dm6]	T	G	2.376e^-4	0.986	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	13494088	3R_13494088_SNP [dm3] 3R_17668366_SNP [dm6]	A	C	2.376e^-4	0.986	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	13494097	3R_13494097_DEL [dm3] 3R_17668375_DEL [dm6]	ATAATAATTAGA...	A	2.376e^-4	0.986	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
3R	13494267	3R_13494267_SNP [dm3] 3R_17668545_SNP [dm6]	C	T	2.382e^-4	0.986	SYNONYMOUS_CODING CG14322 DOWNSTREAM CR45045 & 2 others	TF binding site mE1_TFBS_inv
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	2.386e^-4	0.986	INTERGENIC
2R	15914103	2R_15914103_SNP [dm3] 2R_20026598_SNP [dm6]	A	T	2.388e^-4	0.986	INTERGENIC
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	2.392e^-4	0.986	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18343321	3R_18343321_SNP [dm3] 3R_22517599_SNP [dm6]	T	A	2.395e^-4	0.986	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	15946215	2R_15946215_SNP [dm3] 2R_20058710_SNP [dm6]	C	T	2.397e^-4	0.986	EXON CR44631	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	11230900	2L_11230900_SNP [dm3] 2L_11230900_SNP [dm6]	G	A	2.399e^-4	0.986	INTRON ab
3L	17051681	3L_17051681_SNP [dm3] 3L_17058581_SNP [dm6]	G	T	2.402e^-4	0.986	DOWNSTREAM Rbp6 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	2.408e^-4	0.986	INTRON fz2	TF binding site mE1_TFBS_Trl
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	2.409e^-4	0.986	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	2.411e^-4	0.986	INTRON haf & 1 other
3L	12086473	3L_12086473_INS [dm3] 3L_12093373_INS [dm6]	G	GCACCG	2.413e^-4	0.986	INTERGENIC
2L	18175546	2L_18175546_SNP [dm3] 2L_18175546_SNP [dm6]	T	C	2.414e^-4	0.986	INTRON CG42750
3L	13745657	3L_13745657_SNP [dm3] 3L_13752557_SNP [dm6]	G	T	2.418e^-4	0.986	INTRON bru-3
3R	15622567	3R_15622567_SNP [dm3] 3R_19796845_SNP [dm6]	A	G	2.423e^-4	0.986	SYNONYMOUS_CODING bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2R	10535319	2R_10535319_SNP [dm3] 2R_14647814_SNP [dm6]	G	A	2.434e^-4	0.986	INTERGENIC
3L	19009769	3L_19009769_SNP [dm3] 3L_19016669_SNP [dm6]	C	T	2.447e^-4	0.986	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12750567	3L_12750567_SNP [dm3] 3L_12757467_SNP [dm6]	T	A	2.447e^-4	0.986	INTRON CG32113
3L	10964916	3L_10964916_SNP [dm3] 3L_10971816_SNP [dm6]	A	T	2.451e^-4	0.986	UPSTREAM CG14147 INTERGENIC
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	2.452e^-4	0.986	INTRON CG43729
2R	11340059	2R_11340059_SNP [dm3] 2R_15452554_SNP [dm6]	T	C	2.452e^-4	0.986	INTRON CG43729
2L	12807907	2L_12807907_SNP [dm3] 2L_12807907_SNP [dm6]	A	G	2.454e^-4	0.986	EXON CR43818
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	2.481e^-4	0.986	INTRON Eip63E
3L	9867885	3L_9867885_SNP [dm3] 3L_9874785_SNP [dm6]	T	C	2.489e^-4	0.986	UPSTREAM CR45406 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	2.491e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs
3L	13040896	3L_13040896_SNP [dm3] 3L_13047796_SNP [dm6]	A	T	2.494e^-4	0.986	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18768582	2R_18768582_SNP [dm3] 2R_22881059_SNP [dm6]	T	A	2.506e^-4	0.986	UTR_3_PRIME PIP5K59B DOWNSTREAM CG3501
2L	16520481	2L_16520481_SNP [dm3] 2L_16520481_SNP [dm6]	T	C	2.510e^-4	0.986	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	7074793	2L_7074793_SNP [dm3] 2L_7074793_SNP [dm6]	A	G	2.527e^-4	0.986	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	3838924	2R_3838924_SNP [dm3] 2R_7951419_SNP [dm6]	C	T	2.538e^-4	0.986	UTR_3_PRIME CG30378 DOWNSTREAM CG11165 & 1 other INTRON CG14764	TF binding site BDTNP1_TFBS_twi
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	2.548e^-4	0.986	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	2.551e^-4	0.986	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	9564582	2L_9564582_SNP [dm3] 2L_9564582_SNP [dm6]	G	A	2.552e^-4	0.986	INTRON jp
2R	17042402	2R_17042402_SNP [dm3] 2R_21154897_SNP [dm6]	T	C	2.560e^-4	0.986	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16559447	X_16559447_SNP [dm3] X_16665414_SNP [dm6]	G	C	2.560e^-4	0.986	UPSTREAM CG15865 INTRON r
2R	6681118	2R_6681118_SNP [dm3] 2R_10793613_SNP [dm6]	A	T	2.563e^-4	0.986	DOWNSTREAM mthl13 INTRON CG33144
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	2.563e^-4	0.986	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16473614	2R_16473614_INS [dm3] 2R_20586109_INS [dm6]	C	AA	2.570e^-4	0.986	UPSTREAM mir-991 & 1 other DOWNSTREAM Nnf1a INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9442328	2L_9442328_INS [dm3] 2L_9442328_INS [dm6]	C	CACTC	2.571e^-4	0.986	INTRON numb
X	2359566	X_2359566_SNP [dm3] X_2465533_SNP [dm6]	C	A	2.581e^-4	0.986	INTRON boi	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11566388	3L_11566388_SNP [dm3] 3L_11573288_SNP [dm6]	G	T	2.589e^-4	0.986	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	2.590e^-4	0.986	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	2.596e^-4	0.986	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6078471	X_6078471_SNP [dm3] X_6184438_SNP [dm6]	G	A	2.597e^-4	0.986	INTRON Ca-alpha1T
2L	12692474	2L_12692474_SNP [dm3] 2L_12692474_SNP [dm6]	T	C	2.598e^-4	0.986	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	15914255	2R_15914255_SNP [dm3] 2R_20026750_SNP [dm6]	C	T	2.599e^-4	0.986	INTERGENIC
3R	21570593	3R_21570593_SNP [dm3] 3R_25744871_SNP [dm6]	T	C	2.600e^-4	0.986	SYNONYMOUS_CODING LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570607	3R_21570607_SNP [dm3] 3R_25744885_SNP [dm6]	G	A	2.600e^-4	0.986	SPLICE_SITE_REGION LpR1 INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570618	3R_21570618_SNP [dm3] 3R_25744896_SNP [dm6]	T	A	2.600e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570624	3R_21570624_SNP [dm3] 3R_25744902_SNP [dm6]	T	A	2.600e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570628	3R_21570628_SNP [dm3] 3R_25744906_SNP [dm6]	T	A	2.600e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna
3R	21570689	3R_21570689_SNP [dm3] 3R_25744967_SNP [dm6]	C	T	2.600e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	21570693	3R_21570693_SNP [dm3] 3R_25744971_SNP [dm6]	G	A	2.600e^-4	0.986	INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	19371692	2L_19371692_SNP [dm3] 2L_19371692_SNP [dm6]	T	C	2.607e^-4	0.986	INTRON CG17349
3L	7381549	3L_7381549_SNP [dm3] 3L_7388449_SNP [dm6]	T	C	2.608e^-4	0.986	UPSTREAM CG8564 INTERGENIC
2R	11326862	2R_11326862_SNP [dm3] 2R_15439357_SNP [dm6]	C	T	2.608e^-4	0.986	INTRON CG43729
2L	3396732	2L_3396732_SNP [dm3] 2L_3396732_SNP [dm6]	C	T	2.618e^-4	0.986	DOWNSTREAM CR44792 INTERGENIC
2R	18395204	2R_18395204_SNP [dm3] 2R_22507699_SNP [dm6]	T	C	2.622e^-4	0.986	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	2.633e^-4	0.986	INTERGENIC
2L	18175547	2L_18175547_SNP [dm3] 2L_18175547_SNP [dm6]	G	A	2.636e^-4	0.986	INTRON CG42750
3R	15622019	3R_15622019_SNP [dm3] 3R_19796297_SNP [dm6]	T	C	2.641e^-4	0.986	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	2.646e^-4	0.986	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18484807	X_18484807_SNP [dm3] X_18590774_SNP [dm6]	T	A	2.649e^-4	0.986	INTERGENIC
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	2.659e^-4	0.986	SYNONYMOUS_CODING CG9850
2R	7410569	2R_7410569_SNP [dm3] 2R_11523064_SNP [dm6]	C	A	2.661e^-4	0.986	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	12763900	3R_12763900_SNP [dm3] 3R_16938178_SNP [dm6]	T	C	2.666e^-4	0.986	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	2.667e^-4	0.986	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9560910	2L_9560910_SNP [dm3] 2L_9560910_SNP [dm6]	A	C	2.669e^-4	0.986	UPSTREAM jp INTRON jp
2L	17753508	2L_17753508_SNP [dm3] 2L_17753508_SNP [dm6]	T	A	2.669e^-4	0.986	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	2.676e^-4	0.986	INTRON alph
2L	7447943	2L_7447943_SNP [dm3] 2L_7447943_SNP [dm6]	A	C	2.677e^-4	0.986	START_GAINED santa-maria UTR_5_PRIME santa-maria INTRON santa-maria
2L	6953271	2L_6953271_SNP [dm3] 2L_6953271_SNP [dm6]	T	C	2.678e^-4	0.986	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
X	5059880	X_5059880_SNP [dm3] X_5165847_SNP [dm6]	A	C	2.679e^-4	0.986	INTRON rg & 1 other
3L	3006543	3L_3006543_SNP [dm3] 3L_3006543_SNP [dm6]	C	A	2.682e^-4	0.986	INTRON FMRFaR
2L	1718112	2L_1718112_SNP [dm3] 2L_1718112_SNP [dm6]	A	G	2.697e^-4	0.986	SYNONYMOUS_CODING Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18347069	3R_18347069_SNP [dm3] 3R_22521347_SNP [dm6]	G	A	2.706e^-4	0.986	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2779891	X_2779891_SNP [dm3] X_2885858_SNP [dm6]	A	G	2.715e^-4	0.986	NON_SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1131052	2R_1131052_SNP [dm3] 2R_5243547_SNP [dm6]	G	A	2.735e^-4	0.986	SYNONYMOUS_CODING Nipped-A INTRON Nipped-A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
3R	21570694	3R_21570694_SNP [dm3] 3R_25744972_SNP [dm6]	C	T	2.742e^-4	0.986	SPLICE_SITE_REGION LpR1 INTRON LpR1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7410213	2R_7410213_INS [dm3] 2R_11522708_INS [dm6]	A	AA	2.743e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9564726	2L_9564726_SNP [dm3] 2L_9564726_SNP [dm6]	C	A	2.746e^-4	0.986	INTRON jp
2L	9560523	2L_9560523_SNP [dm3] 2L_9560523_SNP [dm6]	T	A	2.752e^-4	0.986	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad
X	19975403	X_19975403_SNP [dm3] X_20081370_SNP [dm6]	G	T	2.754e^-4	0.986	INTERGENIC
2L	8121714	2L_8121714_SNP [dm3] 2L_8121714_SNP [dm6]	C	T	2.755e^-4	0.986	SYNONYMOUS_CODING mon2	TF binding site mE1_TFBS_cad
3L	12072545	3L_12072545_SNP [dm3] 3L_12079445_SNP [dm6]	G	A	2.758e^-4	0.986	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13040854	3L_13040854_SNP [dm3] 3L_13047754_SNP [dm6]	T	A	2.759e^-4	0.986	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13040856	3L_13040856_SNP [dm3] 3L_13047756_SNP [dm6]	G	T	2.759e^-4	0.986	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6500065	2L_6500065_INS [dm3] 2L_6500065_INS [dm6]	C	CC	2.763e^-4	0.986	INTRON CG31637
X	16559459	X_16559459_SNP [dm3] X_16665426_SNP [dm6]	G	A	2.764e^-4	0.986	UPSTREAM CG15865 INTRON r
2L	9567976	2L_9567976_DEL [dm3] 2L_9567976_DEL [dm6]	CCAAT	C	2.770e^-4	0.986	UPSTREAM CG3838 DOWNSTREAM CR44149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	18090252	2L_18090252_SNP [dm3] 2L_18090252_SNP [dm6]	A	T	2.772e^-4	0.986	DOWNSTREAM CG15153 INTERGENIC
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	2.772e^-4	0.986	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9564348	2L_9564348_SNP [dm3] 2L_9564348_SNP [dm6]	T	G	2.784e^-4	0.986	INTRON jp
2L	13846614	2L_13846614_SNP [dm3] 2L_13846614_SNP [dm6]	T	G	2.784e^-4	0.986	UPSTREAM CG7916 INTRON CenG1A
2L	7436189	2L_7436189_SNP [dm3] 2L_7436189_SNP [dm6]	G	A	2.793e^-4	0.986	INTERGENIC
2L	18175558	2L_18175558_SNP [dm3] 2L_18175558_SNP [dm6]	G	A	2.802e^-4	0.986	INTRON CG42750
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	2.802e^-4	0.986	NON_SYNONYMOUS_CODING mbc
2L	8767452	2L_8767452_SNP [dm3] 2L_8767452_SNP [dm6]	G	A	2.809e^-4	0.986	SYNONYMOUS_CODING CG9463
3R	25240868	3R_25240868_INS [dm3] 3R_29415146_INS [dm6]	G	GG	2.825e^-4	0.986	INTRON Ptp99A
2R	7403502	2R_7403502_SNP [dm3] 2R_11515997_SNP [dm6]	C	T	2.826e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	9535178	2L_9535178_SNP [dm3] 2L_9535178_SNP [dm6]	C	T	2.830e^-4	0.986	SYNONYMOUS_CODING Oatp30B	TF binding site mE1_TFBS_cad
X	17911891	X_17911891_SNP [dm3] X_18017858_SNP [dm6]	A	G	2.831e^-4	0.986	INTRON Sh
3R	13494091	3R_13494091_SNP [dm3] 3R_17668369_SNP [dm6]	C	G	2.832e^-4	0.986	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2R	13930687	2R_13930687_SNP [dm3] 2R_18043182_SNP [dm6]	T	C	2.835e^-4	0.986	SYNONYMOUS_CODING CG5773 DOWNSTREAM CG5770
2R	15899920	2R_15899920_SNP [dm3] 2R_20012415_SNP [dm6]	T	C	2.835e^-4	0.986	INTERGENIC
3R	15663385	3R_15663385_SNP [dm3] 3R_19837663_SNP [dm6]	G	C	2.840e^-4	0.986	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	2.848e^-4	0.986	INTRON a
X	4476865	X_4476865_SNP [dm3] X_4582832_SNP [dm6]	G	T	2.851e^-4	0.986	INTRON CR32773
2L	19316424	2L_19316424_SNP [dm3] 2L_19316424_SNP [dm6]	A	C	2.853e^-4	0.986	INTERGENIC
X	19053682	X_19053682_SNP [dm3] X_19159649_SNP [dm6]	A	G	2.858e^-4	0.986	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	2.879e^-4	0.986	INTRON CG7120
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	2.881e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	9862039	3L_9862039_SNP [dm3] 3L_9868939_SNP [dm6]	T	C	2.883e^-4	0.986	SPLICE_SITE_REGION CG8108 INTRON CG8108	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	2.895e^-4	0.986	INTRON CG3009
3L	14930761	3L_14930761_SNP [dm3] 3L_14937661_SNP [dm6]	A	T	2.896e^-4	0.986	INTRON DCX-EMAP
2L	2059331	2L_2059331_SNP [dm3] 2L_2059331_SNP [dm6]	T	A	2.901e^-4	0.986	UTR_3_PRIME dpr3
X	4586002	X_4586002_SNP [dm3] X_4691969_SNP [dm6]	T	C	2.913e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	2326589	X_2326589_SNP [dm3] X_2432556_SNP [dm6]	G	C	2.914e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	16025035	2L_16025035_SNP [dm3] 2L_16025035_SNP [dm6]	A	G	2.915e^-4	0.986	INTRON beat-Ic
2L	5518096	2L_5518096_SNP [dm3] 2L_5518096_SNP [dm6]	C	A	2.919e^-4	0.986	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna
3R	20827205	3R_20827205_SNP [dm3] 3R_25001483_SNP [dm6]	A	G	2.922e^-4	0.986	SYNONYMOUS_CODING tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9562102	2L_9562102_SNP [dm3] 2L_9562102_SNP [dm6]	C	G	2.928e^-4	0.986	INTRON jp
2L	1598650	2L_1598650_INS [dm3] 2L_1598650_INS [dm6]	G	TAAA	2.931e^-4	0.986	INTRON haf & 1 other
2R	11325802	2R_11325802_SNP [dm3] 2R_15438297_SNP [dm6]	A	G	2.939e^-4	0.986	INTRON CG43729
2R	17784944	2R_17784944_SNP [dm3] 2R_21897439_SNP [dm6]	T	A	2.944e^-4	0.986	INTRON Fili
2L	8703259	2L_8703259_SNP [dm3] 2L_8703259_SNP [dm6]	C	T	2.945e^-4	0.986	UPSTREAM CR44992 INTRON Hnf4
2L	9570296	2L_9570296_SNP [dm3] 2L_9570296_SNP [dm6]	A	C	2.947e^-4	0.986	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9564350	2L_9564350_SNP [dm3] 2L_9564350_SNP [dm6]	C	A	2.951e^-4	0.986	INTRON jp
3L	11699269	3L_11699269_SNP [dm3] 3L_11706169_SNP [dm6]	G	T	2.955e^-4	0.986	INTRON CG11658
2L	9564351	2L_9564351_SNP [dm3] 2L_9564351_SNP [dm6]	A	T	2.957e^-4	0.986	INTRON jp
2L	9442317	2L_9442317_SNP [dm3] 2L_9442317_SNP [dm6]	T	A	2.958e^-4	0.986	INTRON numb
X	18625922	X_18625922_DEL [dm3] X_18731889_DEL [dm6]	GTACATATGTACAT...	G	2.961e^-4	0.986	UPSTREAM CR45512 & 1 other INTERGENIC
2R	9502337	2R_9502337_SNP [dm3] 2R_13614832_SNP [dm6]	T	C	2.991e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4564392	X_4564392_SNP [dm3] X_4670359_SNP [dm6]	G	A	3.001e^-4	0.986	INTRON rap
X	1453982	X_1453982_DEL [dm3] X_1559949_DEL [dm6]	TTT	T	3.010e^-4	0.986	INTRON Mur2B
X	1453996	X_1453996_SNP [dm3] X_1559963_SNP [dm6]	T	A	3.010e^-4	0.986	INTRON Mur2B
X	1454038	X_1454038_SNP [dm3] X_1560005_SNP [dm6]	G	T	3.010e^-4	0.986	INTRON Mur2B
2L	5518131	2L_5518131_SNP [dm3] 2L_5518131_SNP [dm6]	A	C	3.013e^-4	0.986	NON_SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna
2L	1598655	2L_1598655_SNP [dm3] 2L_1598655_SNP [dm6]	T	A	3.022e^-4	0.986	INTRON haf & 1 other
2L	20840375	2L_20840375_SNP [dm3] 2L_20840375_SNP [dm6]	C	A	3.032e^-4	0.986	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb
2L	20840381	2L_20840381_SNP [dm3] 2L_20840381_SNP [dm6]	T	C	3.032e^-4	0.986	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	20840388	2L_20840388_SNP [dm3] 2L_20840388_SNP [dm6]	A	T	3.032e^-4	0.986	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	7199515	2R_7199515_SNP [dm3] 2R_11312010_SNP [dm6]	C	A	3.060e^-4	0.986	SYNONYMOUS_CODING nompA DOWNSTREAM CG43114	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	3.065e^-4	0.986	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	18818956	3L_18818956_SNP [dm3] 3L_18825856_SNP [dm6]	G	A	3.066e^-4	0.986	INTRON Cat
2L	20840392	2L_20840392_SNP [dm3] 2L_20840392_SNP [dm6]	G	A	3.067e^-4	0.986	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	3.075e^-4	0.986	INTRON slo
2L	12874125	2L_12874125_SNP [dm3] 2L_12874125_SNP [dm6]	C	A	3.078e^-4	0.986	INTERGENIC
2R	19645698	2R_19645698_DEL [dm3] 2R_23758175_DEL [dm6]	TT	T	3.091e^-4	0.986	INTRON CG9850
2L	18950671	2L_18950671_SNP [dm3] 2L_18950671_SNP [dm6]	C	A	3.093e^-4	0.986	NON_SYNONYMOUS_CODING CG10428 DOWNSTREAM Nedd8	TF binding site mE1_TFBS_sens
2L	18175543	2L_18175543_DEL [dm3] 2L_18175543_DEL [dm6]	TA	T	3.098e^-4	0.986	INTRON CG42750
X	4585380	X_4585380_SNP [dm3] X_4691347_SNP [dm6]	C	G	3.100e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13873614	X_13873614_SNP [dm3] X_13979581_SNP [dm6]	C	T	3.106e^-4	0.986	INTRON mamo
2L	9564663	2L_9564663_SNP [dm3] 2L_9564663_SNP [dm6]	A	C	3.108e^-4	0.986	INTRON jp
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	3.111e^-4	0.986	INTRON CAP
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	3.114e^-4	0.986	DOWNSTREAM CR45720 INTERGENIC
2R	11340675	2R_11340675_INS [dm3] 2R_15453170_INS [dm6]	A	ACA	3.116e^-4	0.986	INTRON CG43729
3R	13263539	3R_13263539_DEL [dm3] 3R_17437817_DEL [dm6]	TT	T	3.118e^-4	0.986	INTRON CG5873
3L	12750458	3L_12750458_SNP [dm3] 3L_12757358_SNP [dm6]	G	A	3.119e^-4	0.986	SYNONYMOUS_CODING CG32113
2R	8326865	2R_8326865_INS [dm3] 2R_12439360_INS [dm6]	A	ATCTG	3.120e^-4	0.986	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18033065	2R_18033065_SNP [dm3] 2R_22145560_SNP [dm6]	G	A	3.124e^-4	0.986	INTRON a
2R	19629956	2R_19629956_SNP [dm3] 2R_23742433_SNP [dm6]	G	C	3.130e^-4	0.986	INTRON egl
2L	9568674	2L_9568674_INS [dm3] 2L_9568674_INS [dm6]	A	AATTAA	3.131e^-4	0.986	UPSTREAM CG3838 EXON CR44149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	3047770	2L_3047770_SNP [dm3] 2L_3047770_SNP [dm6]	T	C	3.133e^-4	0.986	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D DOWNSTREAM CR43708	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5589687	3L_5589687_SNP [dm3] 3L_5596587_SNP [dm6]	G	A	3.134e^-4	0.986	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1928428	2L_1928428_SNP [dm3] 2L_1928428_SNP [dm6]	C	T	3.138e^-4	0.986	UTR_5_PRIME CG7337 INTRON CG7337
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	3.144e^-4	0.986	INTERGENIC
2L	15321673	2L_15321673_SNP [dm3] 2L_15321673_SNP [dm6]	T	G	3.158e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	2331288	X_2331288_SNP [dm3] X_2437255_SNP [dm6]	C	T	3.171e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9442301	2L_9442301_SNP [dm3] 2L_9442301_SNP [dm6]	A	G	3.179e^-4	0.986	INTRON numb
2L	8766345	2L_8766345_SNP [dm3] 2L_8766345_SNP [dm6]	C	T	3.185e^-4	0.986	SYNONYMOUS_CODING CG9463
3R	26008485	3R_26008485_SNP [dm3] 3R_30182763_SNP [dm6]	T	A	3.186e^-4	0.986	INTERGENIC
3R	20844486	3R_20844486_SNP [dm3] 3R_25018764_SNP [dm6]	G	A	3.186e^-4	0.986	NON_SYNONYMOUS_CODING tnc
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	3.191e^-4	0.986	INTERGENIC
3L	7891365	3L_7891365_DEL [dm3] 3L_7898265_DEL [dm6]	TGAAAATA	T	3.199e^-4	0.986	INTRON pbl
X	4583645	X_4583645_SNP [dm3] X_4689612_SNP [dm6]	A	G	3.215e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9562254	2L_9562254_SNP [dm3] 2L_9562254_SNP [dm6]	T	A	3.216e^-4	0.986	INTRON jp
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	3.222e^-4	0.986	INTERGENIC
2L	9570118	2L_9570118_SNP [dm3] 2L_9570118_SNP [dm6]	A	T	3.230e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	3.231e^-4	0.986	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2L	4197935	2L_4197935_SNP [dm3] 2L_4197935_SNP [dm6]	C	T	3.232e^-4	0.986	UTR_5_PRIME CG3714 UPSTREAM CG3714 DOWNSTREAM ft INTRON CG3714	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	10304139	2R_10304139_DEL [dm3] 2R_14416634_DEL [dm6]	AA	A	3.248e^-4	0.986	INTERGENIC
X	16559445	X_16559445_SNP [dm3] X_16665412_SNP [dm6]	A	T	3.249e^-4	0.986	UPSTREAM CG15865 INTRON r
2L	5978376	2L_5978376_SNP [dm3] 2L_5978376_SNP [dm6]	A	C	3.251e^-4	0.986	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15662919	3R_15662919_SNP [dm3] 3R_19837197_SNP [dm6]	C	T	3.252e^-4	0.986	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	13873454	X_13873454_SNP [dm3] X_13979421_SNP [dm6]	T	A	3.259e^-4	0.986	INTRON mamo
2L	15732021	2L_15732021_INS [dm3] 2L_15732021_INS [dm6]	A	ATT	3.265e^-4	0.986	UPSTREAM CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	19316441	2L_19316441_SNP [dm3] 2L_19316441_SNP [dm6]	T	A	3.268e^-4	0.986	INTERGENIC
2L	10164425	2L_10164425_DEL [dm3] 2L_10164425_DEL [dm6]	ATTA	A	3.268e^-4	0.986	INTRON CG44153
2R	7157615	2R_7157615_SNP [dm3] 2R_11270110_SNP [dm6]	C	G	3.276e^-4	0.986	NON_SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6424633	2L_6424633_SNP [dm3] 2L_6424633_SNP [dm6]	T	C	3.290e^-4	0.986	SYNONYMOUS_CODING Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	6870694	2L_6870694_DEL [dm3] 2L_6870694_DEL [dm6]	CCAACTATATAGC...	C	3.295e^-4	0.986	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
2R	19117745	2R_19117745_SNP [dm3] 2R_23230222_SNP [dm6]	G	T	3.309e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21886647	X_21886647_SNP [dm3] X_22484811_SNP [dm6]	A	T	3.311e^-4	0.986	INTRON Cp110	transposable element FlyBase
3L	1466202	3L_1466202_SNP [dm3] 3L_1466202_SNP [dm6]	T	C	3.322e^-4	0.986	INTRON Ptp61F & 1 other	TF binding site mE1_TFBS_cad
2L	9561853	2L_9561853_SNP [dm3] 2L_9561853_SNP [dm6]	G	T	3.326e^-4	0.986	INTRON jp
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	3.328e^-4	0.986	INTERGENIC
2R	8724885	2R_8724885_SNP [dm3] 2R_12837380_SNP [dm6]	C	A	3.329e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11147765	2R_11147765_SNP [dm3] 2R_15260260_SNP [dm6]	A	C	3.344e^-4	0.986	INTRON ItgalphaPS4
3R	11574925	3R_11574925_SNP [dm3] 3R_15749203_SNP [dm6]	C	T	3.349e^-4	0.986	INTERGENIC
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	3.351e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	3.352e^-4	0.986	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14017397	3L_14017397_SNP [dm3] 3L_14024297_SNP [dm6]	C	T	3.355e^-4	0.986	SYNONYMOUS_CODING ptip
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	3.362e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	4891727	2L_4891727_SNP [dm3] 2L_4891727_SNP [dm6]	G	A	3.372e^-4	0.986	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8172666	X_8172666_SNP [dm3] X_8278633_SNP [dm6]	A	G	3.376e^-4	0.986	UTR_3_PRIME nAChRalpha3
3L	23592526	3L_23592526_SNP [dm3] 3L_23599426_SNP [dm6]	T	C	3.376e^-4	0.986	INTRON AGO3	transposable element FlyBase
2L	9561228	2L_9561228_DEL [dm3] 2L_9561228_DEL [dm6]	TT	T	3.378e^-4	0.986	UPSTREAM jp INTRON jp
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	3.386e^-4	0.986	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4585531	X_4585531_INS [dm3] X_4691498_INS [dm6]	G	GAGTGTGTG	3.393e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14016159	3L_14016159_SNP [dm3] 3L_14023059_SNP [dm6]	G	A	3.398e^-4	0.986	SYNONYMOUS_CODING ptip
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	3.399e^-4	0.986	UTR_5_PRIME CG5160
3L	19288938	3L_19288938_SNP [dm3] 3L_19295838_SNP [dm6]	C	A	3.403e^-4	0.986	INTRON fal	TF binding site BDTNP1_TFBS_dl
2L	10851472	2L_10851472_SNP [dm3] 2L_10851472_SNP [dm6]	G	C	3.408e^-4	0.986	SYNONYMOUS_CODING CG43129 UTR_5_PRIME CG43129 UPSTREAM porin	TF binding site BDTNP1_TFBS_dl
2R	11298188	2R_11298188_SNP [dm3] 2R_15410683_SNP [dm6]	C	T	3.419e^-4	0.986	INTRON CG43729
2L	1351349	2L_1351349_SNP [dm3] 2L_1351349_SNP [dm6]	T	A	3.429e^-4	0.986	DOWNSTREAM CG5556 INTERGENIC
3R	12993252	3R_12993252_SNP [dm3] 3R_17167530_SNP [dm6]	T	G	3.436e^-4	0.986	INTRON Mur89F
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	3.437e^-4	0.986	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	3.437e^-4	0.986	INTRON CG15465 & 1 other
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	3.443e^-4	0.986	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
X	21845350	X_21845350_SNP [dm3] X_22443514_SNP [dm6]	A	T	3.446e^-4	0.986	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	12750431	3L_12750431_SNP [dm3] 3L_12757331_SNP [dm6]	T	C	3.448e^-4	0.986	SYNONYMOUS_CODING CG32113
3R	22542180	3R_22542180_SNP [dm3] 3R_26716458_SNP [dm6]	A	G	3.462e^-4	0.986	NON_SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19006344	2L_19006344_DEL [dm3] 2L_19006344_DEL [dm6]	TTAAT	A	3.466e^-4	0.986	SPLICE_SITE_REGION CG31793 INTRON CG31793
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	3.468e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6503536	X_6503536_SNP [dm3] X_6609503_SNP [dm6]	G	A	3.473e^-4	0.986	INTRON pigs
2L	15321693	2L_15321693_SNP [dm3] 2L_15321693_SNP [dm6]	T	A	3.478e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	4587230	X_4587230_SNP [dm3] X_4693197_SNP [dm6]	A	T	3.480e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	4587238	X_4587238_DEL [dm3] X_4693205_DEL [dm6]	ATGATTAGCTTTA...	A	3.480e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	8501583	2R_8501583_INS [dm3] 2R_12614078_INS [dm6]	A	AG	3.485e^-4	0.986	UTR_5_PRIME Galphaq UTR_3_PRIME CG45086 INTRON Galphaq
2L	6461108	2L_6461108_SNP [dm3] 2L_6461108_SNP [dm6]	T	C	3.493e^-4	0.986	INTRON CG16947
2L	20317081	2L_20317081_INS [dm3] 2L_20317081_INS [dm6]	T	TT	3.496e^-4	0.986	INTRON spir & 1 other
2L	1092808	2L_1092808_SNP [dm3] 2L_1092808_SNP [dm6]	T	A	3.496e^-4	0.986	INTRON CG4629
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	3.500e^-4	0.986	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	5134081	3L_5134081_SNP [dm3] 3L_5140981_SNP [dm6]	A	G	3.504e^-4	0.986	SYNONYMOUS_CODING CG10672 UPSTREAM CG4623 DOWNSTREAM CHMP2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	3.516e^-4	0.986	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
2L	9570241	2L_9570241_SNP [dm3] 2L_9570241_SNP [dm6]	G	A	3.518e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
X	5221846	X_5221846_SNP [dm3] X_5327813_SNP [dm6]	A	G	3.523e^-4	0.986	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
2L	1089084	2L_1089084_SNP [dm3] 2L_1089084_SNP [dm6]	G	A	3.539e^-4	0.986	INTRON CG4629
2L	4267830	2L_4267830_SNP [dm3] 2L_4267830_SNP [dm6]	C	T	3.539e^-4	0.986	INTERGENIC
2R	7120097	2R_7120097_SNP [dm3] 2R_11232592_SNP [dm6]	A	T	3.543e^-4	0.986	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3L	2703732	3L_2703732_SNP [dm3] 3L_2703732_SNP [dm6]	G	T	3.560e^-4	0.986	INTRON Fife
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	3.563e^-4	0.986	INTRON bnl
2R	10944169	2R_10944169_SNP [dm3] 2R_15056664_SNP [dm6]	G	A	3.573e^-4	0.986	UPSTREAM CG33467 INTERGENIC
2L	13832476	2L_13832476_SNP [dm3] 2L_13832476_SNP [dm6]	G	A	3.574e^-4	0.986	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9391825	X_9391825_SNP [dm3] X_9497792_SNP [dm6]	T	G	3.589e^-4	0.986	INTRON mgl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	3.593e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_sens
2R	15029918	2R_15029918_SNP [dm3] 2R_19142413_SNP [dm6]	T	A	3.601e^-4	0.986	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9571482	2L_9571482_SNP [dm3] 2L_9571482_SNP [dm6]	C	G	3.603e^-4	0.986	START_GAINED CG3838 UTR_5_PRIME CG3838
X	16559450	X_16559450_SNP [dm3] X_16665417_SNP [dm6]	T	C	3.604e^-4	0.986	UPSTREAM CG15865 INTRON r
2L	9569454	2L_9569454_SNP [dm3] 2L_9569454_SNP [dm6]	G	C	3.606e^-4	0.986	UPSTREAM CR44149 & 1 other INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	6430491	3R_6430491_SNP [dm3] 3R_10604769_SNP [dm6]	T	C	3.612e^-4	0.986	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15065882	2R_15065882_INS [dm3] 2R_19178377_INS [dm6]	T	TCGAGATTTTCCAGCAGTTG...	3.617e^-4	0.986	UPSTREAM hppy DOWNSTREAM CG10737 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
X	16559458	X_16559458_SNP [dm3] X_16665425_SNP [dm6]	C	A	3.630e^-4	0.986	UPSTREAM CG15865 INTRON r
2L	4199294	2L_4199294_SNP [dm3] 2L_4199294_SNP [dm6]	A	G	3.633e^-4	0.986	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18169851	3R_18169851_SNP [dm3] 3R_22344129_SNP [dm6]	T	A	3.638e^-4	0.986	INTERGENIC
2L	6870708	2L_6870708_SNP [dm3] 2L_6870708_SNP [dm6]	T	C	3.643e^-4	0.986	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
2L	9570185	2L_9570185_SNP [dm3] 2L_9570185_SNP [dm6]	A	C	3.648e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11516189	3L_11516189_SNP [dm3] 3L_11523089_SNP [dm6]	C	T	3.648e^-4	0.986	UTR_3_PRIME Mob2 UPSTREAM CG11714	TF binding site mE1_TFBS_bab1
X	1453925	X_1453925_SNP [dm3] X_1559892_SNP [dm6]	A	G	3.649e^-4	0.986	INTRON Mur2B
3R	12993292	3R_12993292_SNP [dm3] 3R_17167570_SNP [dm6]	T	A	3.654e^-4	0.986	INTRON Mur89F
3L	5953277	3L_5953277_SNP [dm3] 3L_5960177_SNP [dm6]	A	T	3.657e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16634302	2L_16634302_SNP [dm3] 2L_16634302_SNP [dm6]	A	T	3.661e^-4	0.986	INTRON CG42389
3L	18353309	3L_18353309_SNP [dm3] 3L_18360209_SNP [dm6]	T	G	3.671e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	3.678e^-4	0.986	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	20680453	2L_20680453_SNP [dm3] 2L_20680453_SNP [dm6]	C	T	3.681e^-4	0.986	NON_SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11698691	3L_11698691_SNP [dm3] 3L_11705591_SNP [dm6]	T	G	3.683e^-4	0.986	INTRON CG11658
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	3.688e^-4	0.986	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	12993278	3R_12993278_SNP [dm3] 3R_17167556_SNP [dm6]	C	T	3.690e^-4	0.986	INTRON Mur89F
2R	14293045	2R_14293045_SNP [dm3] 2R_18405540_SNP [dm6]	C	G	3.698e^-4	0.986	UPSTREAM GstE6 DOWNSTREAM GstE5 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
2L	18174670	2L_18174670_SNP [dm3] 2L_18174670_SNP [dm6]	T	A	3.699e^-4	0.986	INTRON CG42750
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	3.700e^-4	0.986	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	7120082	2R_7120082_SNP [dm3] 2R_11232577_SNP [dm6]	C	T	3.703e^-4	0.986	UPSTREAM metro DOWNSTREAM CG13218 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	19645313	2R_19645313_SNP [dm3] 2R_23757790_SNP [dm6]	G	T	3.709e^-4	0.986	SYNONYMOUS_CODING CG9850
2L	15788853	2L_15788853_SNP [dm3] 2L_15788853_SNP [dm6]	T	C	3.723e^-4	0.986	SYNONYMOUS_CODING CG18109	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15611578	2L_15611578_SNP [dm3] 2L_15611578_SNP [dm6]	G	A	3.726e^-4	0.986	SYNONYMOUS_CODING CG15255 DOWNSTREAM CR44865 & 1 other
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	3.730e^-4	0.986	INTRON CG43729
3L	12750920	3L_12750920_SNP [dm3] 3L_12757820_SNP [dm6]	A	G	3.737e^-4	0.986	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
3L	24002365	3L_24002365_SNP [dm3] 3L_24009265_SNP [dm6]	T	A	3.751e^-4	0.986	DOWNSTREAM CR40053 INTERGENIC
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	3.754e^-4	0.986	INTRON CG31637
2L	3855081	2L_3855081_SNP [dm3] 2L_3855081_SNP [dm6]	A	T	3.758e^-4	0.986	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	4909458	3R_4909458_SNP [dm3] 3R_9083736_SNP [dm6]	C	A	3.762e^-4	0.986	INTRON pum
3L	10475830	3L_10475830_SNP [dm3] 3L_10482730_SNP [dm6]	C	T	3.763e^-4	0.986	INTRON A2bp1
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	3.765e^-4	0.986	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	3.766e^-4	0.986	INTRON fas
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	3.777e^-4	0.986	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	3.784e^-4	0.986	NON_SYNONYMOUS_CODING CG13618
3R	21757093	3R_21757093_SNP [dm3] 3R_25931371_SNP [dm6]	C	T	3.786e^-4	0.986	UPSTREAM CR34024 INTRON CCAP-R	TF binding site mE1_TFBS_inv
X	4582013	X_4582013_SNP [dm3] X_4687980_SNP [dm6]	C	T	3.788e^-4	0.986	START_GAINED ctp UTR_5_PRIME ctp UPSTREAM ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9571290	2L_9571290_SNP [dm3] 2L_9571290_SNP [dm6]	A	C	3.789e^-4	0.986	START_GAINED CG3838 UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_dl
X	10014496	X_10014496_SNP [dm3] X_10120463_SNP [dm6]	C	A	3.793e^-4	0.986	INTRON RhoU & 1 other
X	4582882	X_4582882_SNP [dm3] X_4688849_SNP [dm6]	C	G	3.798e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	18091938	2L_18091938_SNP [dm3] 2L_18091938_SNP [dm6]	G	C	3.801e^-4	0.986	NON_SYNONYMOUS_CODING CG15153	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4585460	X_4585460_SNP [dm3] X_4691427_SNP [dm6]	G	C	3.806e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12738014	3L_12738014_SNP [dm3] 3L_12744914_SNP [dm6]	T	C	3.810e^-4	0.986	SYNONYMOUS_CODING CG32112 UPSTREAM CG32109
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	3.813e^-4	0.986	UPSTREAM para INTERGENIC
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	3.819e^-4	0.986	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6946669	3R_6946669_SNP [dm3] 3R_11120947_SNP [dm6]	T	A	3.827e^-4	0.986	INTERGENIC
2L	9496174	2L_9496174_SNP [dm3] 2L_9496174_SNP [dm6]	C	T	3.830e^-4	0.986	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	20517771	3R_20517771_DEL [dm3] 3R_24692049_DEL [dm6]	TT	T	3.839e^-4	0.986	INTRON slo
2R	9814399	2R_9814399_SNP [dm3] 2R_13926894_SNP [dm6]	C	T	3.842e^-4	0.986	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5978045	2L_5978045_SNP [dm3] 2L_5978045_SNP [dm6]	T	G	3.843e^-4	0.986	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5112151	2R_5112151_SNP [dm3] 2R_9224646_SNP [dm6]	C	T	3.852e^-4	0.986	INTERGENIC
2R	4945353	2R_4945353_SNP [dm3] 2R_9057848_SNP [dm6]	G	C	3.857e^-4	0.986	INTRON CG13743
3R	25427007	3R_25427007_SNP [dm3] 3R_29601285_SNP [dm6]	G	A	3.865e^-4	0.986	UPSTREAM CG7568 INTRON alph
2L	13832377	2L_13832377_SNP [dm3] 2L_13832377_SNP [dm6]	T	G	3.870e^-4	0.986	NON_SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
2L	6045128	2L_6045128_SNP [dm3] 2L_6045128_SNP [dm6]	G	A	3.873e^-4	0.986	SYNONYMOUS_CODING ade2 DOWNSTREAM mir-966	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25980401	3R_25980401_INS [dm3] 3R_30154679_INS [dm6]	T	TT	3.875e^-4	0.986	INTRON CG11498	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	3.886e^-4	0.986	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	14712083	3R_14712083_SNP [dm3] 3R_18886361_SNP [dm6]	T	C	3.894e^-4	0.986	INTERGENIC
3L	7988490	3L_7988490_SNP [dm3] 3L_7995390_SNP [dm6]	T	A	3.895e^-4	0.986	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8206145	2R_8206145_SNP [dm3] 2R_12318640_SNP [dm6]	C	G	3.898e^-4	0.986	INTERGENIC	transposable element FlyBase
2R	15986737	2R_15986737_SNP [dm3] 2R_20099232_SNP [dm6]	G	A	3.903e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11779661	2R_11779661_SNP [dm3] 2R_15892156_SNP [dm6]	A	G	3.910e^-4	0.986	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4624631	2L_4624631_SNP [dm3] 2L_4624631_SNP [dm6]	C	G	3.911e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7410419	2R_7410419_INS [dm3] 2R_11522914_INS [dm6]	T	TGTT	3.911e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	11072516	2L_11072516_SNP [dm3] 2L_11072516_SNP [dm6]	G	A	3.912e^-4	0.986	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15100187	2R_15100187_SNP [dm3] 2R_19212682_SNP [dm6]	C	T	3.915e^-4	0.986	INTRON hppy	TF binding site mE1_TFBS_inv
3L	12750309	3L_12750309_SNP [dm3] 3L_12757209_SNP [dm6]	C	G	3.916e^-4	0.986	NON_SYNONYMOUS_CODING CG32113
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	3.917e^-4	0.986	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	4581171	X_4581171_SNP [dm3] X_4687138_SNP [dm6]	A	G	3.917e^-4	0.986	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
2R	1490812	2R_1490812_SNP [dm3] 2R_5603307_SNP [dm6]	C	A	3.935e^-4	0.986	DOWNSTREAM Fis1 INTERGENIC
2R	18943904	2R_18943904_SNP [dm3] 2R_23056381_SNP [dm6]	C	T	3.937e^-4	0.986	INTRON CG44252
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	3.950e^-4	0.986	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	13256615	3L_13256615_INS [dm3] 3L_13263515_INS [dm6]	C	CT	3.950e^-4	0.986	INTRON caps	enhancer mE1_CBP_Enhancers
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	3.974e^-4	0.986	INTRON klg
X	16559535	X_16559535_SNP [dm3] X_16665502_SNP [dm6]	A	T	3.979e^-4	0.986	INTRON r
2R	19619527	2R_19619527_SNP [dm3] 2R_23732004_SNP [dm6]	G	C	3.979e^-4	0.986	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	3.987e^-4	0.986	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	3.999e^-4	0.986	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	19087963	3L_19087963_SNP [dm3] 3L_19094863_SNP [dm6]	A	G	4.013e^-4	0.986	DOWNSTREAM CG11577 & 1 other INTERGENIC
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	4.026e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	21189046	3R_21189046_SNP [dm3] 3R_25363324_SNP [dm6]	T	C	4.034e^-4	0.986	INTRON Fur1
X	5059779	X_5059779_SNP [dm3] X_5165746_SNP [dm6]	A	T	4.049e^-4	0.986	INTRON rg & 1 other
2L	10067202	2L_10067202_SNP [dm3] 2L_10067202_SNP [dm6]	A	G	4.050e^-4	0.986	INTRON CG44153
3R	10139076	3R_10139076_SNP [dm3] 3R_14313354_SNP [dm6]	G	A	4.051e^-4	0.986	SYNONYMOUS_CODING CG31321
3R	13738490	3R_13738490_SNP [dm3] 3R_17912768_SNP [dm6]	C	A	4.055e^-4	0.986	DOWNSTREAM CG43445 INTRON Rim
3L	12738655	3L_12738655_SNP [dm3] 3L_12745555_SNP [dm6]	G	A	4.056e^-4	0.986	DOWNSTREAM CG32112 INTRON CG32109
2R	17784989	2R_17784989_SNP [dm3] 2R_21897484_SNP [dm6]	T	A	4.068e^-4	0.986	INTRON Fili
3R	13494095	3R_13494095_SNP [dm3] 3R_17668373_SNP [dm6]	T	A	4.068e^-4	0.986	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	9569845	2L_9569845_SNP [dm3] 2L_9569845_SNP [dm6]	G	A	4.071e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6199735	2L_6199735_SNP [dm3] 2L_6199735_SNP [dm6]	C	T	4.077e^-4	0.986	INTRON CG34380	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	4.079e^-4	0.986	INTERGENIC
3L	10767393	3L_10767393_SNP [dm3] 3L_10774293_SNP [dm6]	G	C	4.079e^-4	0.986	DOWNSTREAM CG43245 INTERGENIC
2R	18032528	2R_18032528_INS [dm3] 2R_22145023_INS [dm6]	G	GG	4.090e^-4	0.986	INTRON a
2L	6953244	2L_6953244_SNP [dm3] 2L_6953244_SNP [dm6]	T	C	4.095e^-4	0.986	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
2L	9566611	2L_9566611_SNP [dm3] 2L_9566611_SNP [dm6]	G	A	4.104e^-4	0.986	START_GAINED jp UTR_5_PRIME jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	16491446	2L_16491446_SNP [dm3] 2L_16491446_SNP [dm6]	C	A	4.113e^-4	0.986	UPSTREAM Tpr2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Ubx
2L	19637775	2L_19637775_DEL [dm3] 2L_19637775_DEL [dm6]	ATAAATAA	A	4.124e^-4	0.986	INTRON Lar
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	4.147e^-4	0.986	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	4.147e^-4	0.986	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10054425	2L_10054425_SNP [dm3] 2L_10054425_SNP [dm6]	T	A	4.148e^-4	0.986	DOWNSTREAM CR44875 INTRON Cpr31A
3R	8830731	3R_8830731_SNP [dm3] 3R_13005009_SNP [dm6]	C	T	4.150e^-4	0.986	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3743187	X_3743187_SNP [dm3] X_3849154_SNP [dm6]	A	T	4.150e^-4	0.986	INTRON ec
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	4.157e^-4	0.986	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3L	12739309	3L_12739309_SNP [dm3] 3L_12746209_SNP [dm6]	G	A	4.163e^-4	0.986	NON_SYNONYMOUS_CODING CG32109 DOWNSTREAM Klc	TF binding site mE1_TFBS_inv
3L	7485283	3L_7485283_SNP [dm3] 3L_7492183_SNP [dm6]	C	T	4.165e^-4	0.986	SYNONYMOUS_CODING Cyp316a1
3L	13257009	3L_13257009_SNP [dm3] 3L_13263909_SNP [dm6]	C	G	4.168e^-4	0.986	INTRON caps	enhancer mE1_CBP_Enhancers
3L	14016369	3L_14016369_SNP [dm3] 3L_14023269_SNP [dm6]	A	G	4.171e^-4	0.986	SYNONYMOUS_CODING ptip
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	4.177e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14018821	3L_14018821_SNP [dm3] 3L_14025721_SNP [dm6]	C	T	4.179e^-4	0.986	SYNONYMOUS_CODING ptip
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	4.181e^-4	0.986	INTRON CG10249	TF binding site mE1_TFBS_cnc
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	4.184e^-4	0.986	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3470385	3L_3470385_SNP [dm3] 3L_3470385_SNP [dm6]	T	C	4.192e^-4	0.986	SPLICE_SITE_REGION CG14971 INTRON CG14971
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	4.195e^-4	0.986	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3L	14016301	3L_14016301_SNP [dm3] 3L_14023201_SNP [dm6]	T	C	4.196e^-4	0.986	SYNONYMOUS_CODING ptip
3R	25738543	3R_25738543_SNP [dm3] 3R_29912821_SNP [dm6]	C	T	4.207e^-4	0.986	UTR_3_PRIME CG31036 DOWNSTREAM Capa
X	4586184	X_4586184_INS [dm3] X_4692151_INS [dm6]	C	CAT	4.223e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	3048367	2L_3048367_SNP [dm3] 2L_3048367_SNP [dm6]	G	C	4.235e^-4	0.986	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3048463	2L_3048463_SNP [dm3] 2L_3048463_SNP [dm6]	C	T	4.235e^-4	0.986	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	11838561	3R_11838561_INS [dm3] 3R_16012839_INS [dm6]	T	TTTGGGT	4.239e^-4	0.986	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	12173080	X_12173080_SNP [dm3] X_12279047_SNP [dm6]	T	C	4.244e^-4	0.986	INTRON Ten-a
X	14155398	X_14155398_SNP [dm3] X_14261365_SNP [dm6]	C	T	4.260e^-4	0.986	START_GAINED CG1461 UTR_5_PRIME CG1461
X	14262237	X_14262237_SNP [dm3] X_14368204_SNP [dm6]	C	T	4.268e^-4	0.986	INTRON dpr8
X	4587157	X_4587157_SNP [dm3] X_4693124_SNP [dm6]	G	T	4.268e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	9560618	2L_9560618_SNP [dm3] 2L_9560618_SNP [dm6]	C	T	4.271e^-4	0.986	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad
2R	10302024	2R_10302024_SNP [dm3] 2R_14414519_SNP [dm6]	C	G	4.284e^-4	0.986	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	4.285e^-4	0.986	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
X	1454133	X_1454133_SNP [dm3] X_1560100_SNP [dm6]	C	A	4.285e^-4	0.986	INTRON Mur2B
X	13173591	X_13173591_SNP [dm3] X_13279558_SNP [dm6]	C	T	4.296e^-4	0.986	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2L	19099375	2L_19099375_SNP [dm3] 2L_19099375_SNP [dm6]	A	T	4.302e^-4	0.986	INTRON Lim3
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	4.307e^-4	0.986	INTRON fas
X	15165714	X_15165714_SNP [dm3] X_15271681_SNP [dm6]	G	A	4.309e^-4	0.986	SYNONYMOUS_CODING CG9106
2R	2518879	2R_2518879_SNP [dm3] 2R_6631374_SNP [dm6]	G	A	4.327e^-4	0.986	INTRON Vha16-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	16047165	3R_16047165_SNP [dm3] 3R_20221443_SNP [dm6]	C	G	4.331e^-4	0.986	INTRON Nlg4
X	1452746	X_1452746_SNP [dm3] X_1558713_SNP [dm6]	C	T	4.334e^-4	0.986	UTR_5_PRIME Mur2B UPSTREAM snmRNA:400
2R	15914631	2R_15914631_SNP [dm3] 2R_20027126_SNP [dm6]	T	A	4.336e^-4	0.986	INTERGENIC
3L	9510912	3L_9510912_SNP [dm3] 3L_9517812_SNP [dm6]	T	A	4.340e^-4	0.986	INTRON CG33700
2R	16555888	2R_16555888_DEL [dm3] 2R_20668383_DEL [dm6]	ATAAAACCTTTTACATTTAG...	A	4.345e^-4	0.986	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	12737550	3L_12737550_SNP [dm3] 3L_12744450_SNP [dm6]	A	G	4.352e^-4	0.986	SYNONYMOUS_CODING CG32112 UPSTREAM CG32109
2L	6129868	2L_6129868_SNP [dm3] 2L_6129868_SNP [dm6]	G	A	4.359e^-4	0.986	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25983575	3R_25983575_SNP [dm3] 3R_30157853_SNP [dm6]	G	A	4.360e^-4	0.986	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15987704	2R_15987704_SNP [dm3] 2R_20100199_SNP [dm6]	T	A	4.363e^-4	0.986	INTERGENIC
X	4490612	X_4490612_SNP [dm3] X_4596579_SNP [dm6]	T	G	4.376e^-4	0.986	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	5388686	X_5388686_SNP [dm3] X_5494653_SNP [dm6]	C	A	4.383e^-4	0.986	SYNONYMOUS_CODING frma DOWNSTREAM SPR
X	22076954	X_22076954_SNP [dm3] X_22675118_SNP [dm6]	C	A	4.386e^-4	0.986	INTRON CR44997
2L	902061	2L_902061_SNP [dm3] 2L_902061_SNP [dm6]	G	A	4.390e^-4	0.986	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19762132	2L_19762132_SNP [dm3] 2L_19762132_SNP [dm6]	A	G	4.391e^-4	0.986	SYNONYMOUS_CODING fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4052955	2L_4052955_SNP [dm3] 2L_4052955_SNP [dm6]	A	G	4.392e^-4	0.986	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	16598419	2L_16598419_SNP [dm3] 2L_16598419_SNP [dm6]	C	T	4.395e^-4	0.986	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19762165	2L_19762165_SNP [dm3] 2L_19762165_SNP [dm6]	A	G	4.403e^-4	0.986	SYNONYMOUS_CODING fbp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13735055	2L_13735055_SNP [dm3] 2L_13735055_SNP [dm6]	T	G	4.408e^-4	0.986	INTERGENIC
3L	14016657	3L_14016657_SNP [dm3] 3L_14023557_SNP [dm6]	G	A	4.414e^-4	0.986	INTRON ptip	TF binding site mE1_TFBS_chinmo
3R	18162612	3R_18162612_SNP [dm3] 3R_22336890_SNP [dm6]	C	A	4.416e^-4	0.986	DOWNSTREAM CG5388 INTRON CG5388
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	4.416e^-4	0.986	INTRON twi & 1 other
2L	13745636	2L_13745636_SNP [dm3] 2L_13745636_SNP [dm6]	A	C	4.423e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	4.423e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	4.440e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17753088	2L_17753088_SNP [dm3] 2L_17753088_SNP [dm6]	G	T	4.442e^-4	0.986	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	17282274	2L_17282274_SNP [dm3] 2L_17282274_SNP [dm6]	G	C	4.449e^-4	0.986	INTERGENIC
3R	24709199	3R_24709199_INS [dm3] 3R_28883477_INS [dm6]	G	GG	4.450e^-4	0.986	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	4.452e^-4	0.986	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6304328	2L_6304328_SNP [dm3] 2L_6304328_SNP [dm6]	A	G	4.454e^-4	0.986	INTRON Ddr
X	1452803	X_1452803_SNP [dm3] X_1558770_SNP [dm6]	G	T	4.455e^-4	0.986	UTR_5_PRIME Mur2B UPSTREAM snmRNA:400
2R	15914236	2R_15914236_SNP [dm3] 2R_20026731_SNP [dm6]	G	A	4.465e^-4	0.986	INTERGENIC
2R	15914238	2R_15914238_SNP [dm3] 2R_20026733_SNP [dm6]	C	A	4.465e^-4	0.986	INTERGENIC
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	4.466e^-4	0.986	INTRON CG34377
2L	3048208	2L_3048208_SNP [dm3] 2L_3048208_SNP [dm6]	C	T	4.472e^-4	0.986	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12750461	3L_12750461_SNP [dm3] 3L_12757361_SNP [dm6]	C	T	4.479e^-4	0.986	SYNONYMOUS_CODING CG32113
3L	12750501	3L_12750501_SNP [dm3] 3L_12757401_SNP [dm6]	G	A	4.490e^-4	0.986	NON_SYNONYMOUS_CODING CG32113
2L	8767254	2L_8767254_SNP [dm3] 2L_8767254_SNP [dm6]	G	A	4.495e^-4	0.986	SYNONYMOUS_CODING CG9463
2L	15626650	2L_15626650_SNP [dm3] 2L_15626650_SNP [dm6]	T	G	4.497e^-4	0.986	INTERGENIC
3L	11663805	3L_11663805_SNP [dm3] 3L_11670705_SNP [dm6]	G	A	4.498e^-4	0.986	INTRON CG32085
3L	18818952	3L_18818952_SNP [dm3] 3L_18825852_SNP [dm6]	G	A	4.499e^-4	0.986	INTRON Cat
2R	17769474	2R_17769474_SNP [dm3] 2R_21881969_SNP [dm6]	C	T	4.503e^-4	0.986	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6866863	2L_6866863_SNP [dm3] 2L_6866863_SNP [dm6]	C	G	4.503e^-4	0.986	INTRON Nha1
3R	25738476	3R_25738476_SNP [dm3] 3R_29912754_SNP [dm6]	A	G	4.505e^-4	0.986	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
3L	14428917	3L_14428917_SNP [dm3] 3L_14435817_SNP [dm6]	T	G	4.511e^-4	0.986	INTRON bbg
X	19054128	X_19054128_SNP [dm3] X_19160095_SNP [dm6]	C	A	4.520e^-4	0.986	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10238592	2R_10238592_SNP [dm3] 2R_14351087_SNP [dm6]	C	T	4.520e^-4	0.986	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
X	6078175	X_6078175_SNP [dm3] X_6184142_SNP [dm6]	C	A	4.523e^-4	0.986	INTRON Ca-alpha1T
X	4583641	X_4583641_DEL [dm3] X_4689608_DEL [dm6]	TT	T	4.524e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	4.536e^-4	0.986	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
3L	16335959	3L_16335959_SNP [dm3] 3L_16342859_SNP [dm6]	C	G	4.539e^-4	0.986	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
X	5223597	X_5223597_SNP [dm3] X_5329564_SNP [dm6]	C	A	4.541e^-4	0.986	UPSTREAM XRCC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17978728	3R_17978728_SNP [dm3] 3R_22153006_SNP [dm6]	T	G	4.543e^-4	0.986	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
3R	12949556	3R_12949556_SNP [dm3] 3R_17123834_SNP [dm6]	C	T	4.543e^-4	0.986	UPSTREAM CG45079 INTRON cher
2L	20818487	2L_20818487_SNP [dm3] 2L_20818487_SNP [dm6]	A	C	4.550e^-4	0.986	NON_SYNONYMOUS_CODING CheB38a
2L	20852810	2L_20852810_SNP [dm3] 2L_20852810_SNP [dm6]	A	G	4.564e^-4	0.986	NON_SYNONYMOUS_CODING twit	TF binding site mE1_TFBS_cad
2L	9566651	2L_9566651_SNP [dm3] 2L_9566651_SNP [dm6]	G	A	4.570e^-4	0.986	UTR_5_PRIME jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	4.579e^-4	0.986	DOWNSTREAM CR44026 INTRON baz
2L	18169120	2L_18169120_SNP [dm3] 2L_18169120_SNP [dm6]	A	C	4.579e^-4	0.986	INTRON CG42750	TF binding site mE1_TFBS_inv
X	21847065	X_21847065_SNP [dm3] X_22445229_SNP [dm6]	G	T	4.580e^-4	0.986	SYNONYMOUS_CODING CG14621 UTR_5_PRIME CG14621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	19288910	3L_19288910_SNP [dm3] 3L_19295810_SNP [dm6]	G	A	4.596e^-4	0.986	INTRON fal	TF binding site BDTNP1_TFBS_dl
3L	19927651	3L_19927651_SNP [dm3] 3L_19934551_SNP [dm6]	C	T	4.598e^-4	0.986	DOWNSTREAM CR45678 INTERGENIC
3R	16953626	3R_16953626_SNP [dm3] 3R_21127904_SNP [dm6]	C	T	4.599e^-4	0.986	UPSTREAM CG5793 & 1 other INTRON CG5793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26568704	3R_26568704_SNP [dm3] 3R_30742982_SNP [dm6]	G	T	4.600e^-4	0.986	SYNONYMOUS_CODING CG15543
X	21122546	X_21122546_SNP [dm3] X_21251519_SNP [dm6]	T	A	4.603e^-4	0.986	UPSTREAM CG1722 INTRON CG32521
2L	3883058	2L_3883058_DEL [dm3] 2L_3883058_DEL [dm6]	GAGAAC	A	4.610e^-4	0.986	INTRON capu	TF binding site mE1_TFBS_HSA
2L	9991545	2L_9991545_SNP [dm3] 2L_9991545_SNP [dm6]	T	A	4.633e^-4	0.986	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7297674	2L_7297674_SNP [dm3] 2L_7297674_SNP [dm6]	G	T	4.638e^-4	0.986	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	14016532	3L_14016532_SNP [dm3] 3L_14023432_SNP [dm6]	C	T	4.642e^-4	0.986	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
3R	11078120	3R_11078120_SNP [dm3] 3R_15252398_SNP [dm6]	A	T	4.646e^-4	0.986	INTRON CG42404	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	4.646e^-4	0.986	UPSTREAM CG1722 INTRON CG32521
2L	7437034	2L_7437034_SNP [dm3] 2L_7437034_SNP [dm6]	G	T	4.666e^-4	0.986	UPSTREAM CG5973 INTERGENIC
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	4.666e^-4	0.986	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	4.669e^-4	0.986	INTRON CG14521
3L	2401354	3L_2401354_SNP [dm3] 3L_2401354_SNP [dm6]	G	C	4.678e^-4	0.986	INTRON CG45186
X	2326605	X_2326605_SNP [dm3] X_2432572_SNP [dm6]	A	G	4.690e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	4.700e^-4	0.986	UPSTREAM CG8012 INTERGENIC
X	4584394	X_4584394_SNP [dm3] X_4690361_SNP [dm6]	A	T	4.704e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14761089	3L_14761089_SNP [dm3] 3L_14767989_SNP [dm6]	T	G	4.710e^-4	0.986	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
3R	20347194	3R_20347194_SNP [dm3] 3R_24521472_SNP [dm6]	C	T	4.710e^-4	0.986	UTR_3_PRIME Pp1alpha-96A DOWNSTREAM Pp1alpha-96A	TF binding site BDTNP1_TFBS_dl
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	4.719e^-4	0.986	UPSTREAM CG1722 INTRON CG32521
2L	9564615	2L_9564615_INS [dm3] 2L_9564615_INS [dm6]	T	TG	4.722e^-4	0.986	INTRON jp
3L	1885856	3L_1885856_SNP [dm3] 3L_1885856_SNP [dm6]	G	A	4.729e^-4	0.986	UPSTREAM Aprt INTRON Tmhs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	11339848	2R_11339848_SNP [dm3] 2R_15452343_SNP [dm6]	C	A	4.737e^-4	0.986	INTRON CG43729
2R	11339849	2R_11339849_SNP [dm3] 2R_15452344_SNP [dm6]	G	C	4.737e^-4	0.986	INTRON CG43729
3L	6785353	3L_6785353_SNP [dm3] 3L_6792253_SNP [dm6]	C	T	4.740e^-4	0.986	SYNONYMOUS_CODING vvl UTR_3_PRIME vvl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	11594100	2R_11594100_SNP [dm3] 2R_15706595_SNP [dm6]	G	A	4.741e^-4	0.986	INTERGENIC
2L	9564312	2L_9564312_SNP [dm3] 2L_9564312_SNP [dm6]	C	T	4.748e^-4	0.986	INTRON jp
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	4.758e^-4	0.986	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
2L	9578728	2L_9578728_SNP [dm3] 2L_9578728_SNP [dm6]	T	C	4.766e^-4	0.986	UTR_3_PRIME CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	14018901	3L_14018901_SNP [dm3] 3L_14025801_SNP [dm6]	T	C	4.773e^-4	0.986	INTRON ptip
2L	9570219	2L_9570219_SNP [dm3] 2L_9570219_SNP [dm6]	A	C	4.777e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5673149	2R_5673149_SNP [dm3] 2R_9785644_SNP [dm6]	G	C	4.778e^-4	0.986	INTRON CG1688
3R	16047181	3R_16047181_SNP [dm3] 3R_20221459_SNP [dm6]	G	T	4.786e^-4	0.986	INTRON Nlg4
2L	19411895	2L_19411895_SNP [dm3] 2L_19411895_SNP [dm6]	C	A	4.787e^-4	0.986	UPSTREAM Pax INTRON Pax
X	18645720	X_18645720_SNP [dm3] X_18751687_SNP [dm6]	A	G	4.794e^-4	0.986	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1312975	2R_1312975_SNP [dm3] 2R_5425470_SNP [dm6]	A	C	4.795e^-4	0.986	INTRON laccase2	transposable element FlyBase
3R	15663126	3R_15663126_SNP [dm3] 3R_19837404_SNP [dm6]	A	T	4.806e^-4	0.986	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18141486	2L_18141486_SNP [dm3] 2L_18141486_SNP [dm6]	G	A	4.808e^-4	0.986	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19029274	3L_19029274_DEL [dm3] 3L_19036174_DEL [dm6]	AA	A	4.810e^-4	0.986	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4531647	X_4531647_SNP [dm3] X_4637614_SNP [dm6]	C	G	4.828e^-4	0.986	NON_SYNONYMOUS_CODING pon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9967808	2L_9967808_SNP [dm3] 2L_9967808_SNP [dm6]	T	C	4.829e^-4	0.986	SYNONYMOUS_CODING RpL13 UPSTREAM Dref	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12343191	3L_12343191_SNP [dm3] 3L_12350091_SNP [dm6]	G	A	4.838e^-4	0.986	INTRON CrzR
X	21845742	X_21845742_SNP [dm3] X_22443906_SNP [dm6]	A	T	4.840e^-4	0.986	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	891244	3L_891244_SNP [dm3] 3L_891244_SNP [dm6]	G	C	4.840e^-4	0.986	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10034013	2R_10034013_SNP [dm3] 2R_14146508_SNP [dm6]	A	T	4.840e^-4	0.986	UPSTREAM mir-989 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	9564356	2L_9564356_SNP [dm3] 2L_9564356_SNP [dm6]	G	T	4.842e^-4	0.986	INTRON jp
X	6333686	X_6333686_SNP [dm3] X_6439653_SNP [dm6]	C	T	4.871e^-4	0.986	INTRON CG42340
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	4.872e^-4	0.986	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	4.882e^-4	0.986	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	12750606	3L_12750606_SNP [dm3] 3L_12757506_SNP [dm6]	C	T	4.884e^-4	0.986	SPLICE_SITE_REGION CG32113 INTRON CG32113
2L	20818613	2L_20818613_SNP [dm3] 2L_20818613_SNP [dm6]	G	A	4.893e^-4	0.986	UPSTREAM CheB38a INTERGENIC
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	4.908e^-4	0.986	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
2R	16481994	2R_16481994_SNP [dm3] 2R_20594489_SNP [dm6]	A	G	4.909e^-4	0.986	INTRON bl
2L	1792847	2L_1792847_SNP [dm3] 2L_1792847_SNP [dm6]	T	C	4.919e^-4	0.986	NON_SYNONYMOUS_CODING Gr22b DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
3L	11854901	3L_11854901_SNP [dm3] 3L_11861801_SNP [dm6]	C	T	4.939e^-4	0.986	INTRON CG44837
2L	9565650	2L_9565650_SNP [dm3] 2L_9565650_SNP [dm6]	C	T	4.940e^-4	0.986	UPSTREAM jp INTRON jp
2L	19371689	2L_19371689_SNP [dm3] 2L_19371689_SNP [dm6]	A	T	4.940e^-4	0.986	INTRON CG17349
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	4.941e^-4	0.986	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15170411	3R_15170411_SNP [dm3] 3R_19344689_SNP [dm6]	T	A	4.948e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	12738647	3L_12738647_SNP [dm3] 3L_12745547_SNP [dm6]	G	A	4.949e^-4	0.986	DOWNSTREAM CG32112 INTRON CG32109
X	14461994	X_14461994_SNP [dm3] X_14567961_SNP [dm6]	A	T	4.952e^-4	0.986	INTERGENIC
3L	14333587	3L_14333587_SNP [dm3] 3L_14340487_SNP [dm6]	A	G	4.953e^-4	0.986	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	4.956e^-4	0.986	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
3R	25986697	3R_25986697_SNP [dm3] 3R_30160975_SNP [dm6]	A	G	4.967e^-4	0.986	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	677998	3L_677998_SNP [dm3] 3L_677998_SNP [dm6]	A	G	4.968e^-4	0.986	UTR_3_PRIME CG17129
X	2567894	X_2567894_SNP [dm3] X_2673861_SNP [dm6]	C	A	4.978e^-4	0.986	INTRON sgg
2R	17042713	2R_17042713_SNP [dm3] 2R_21155208_SNP [dm6]	C	A	4.986e^-4	0.986	SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15621849	3R_15621849_SNP [dm3] 3R_19796127_SNP [dm6]	C	A	4.991e^-4	0.986	INTRON bnl	TF binding site mE1_TFBS_cad
2L	5686446	2L_5686446_SNP [dm3] 2L_5686446_SNP [dm6]	C	A	4.997e^-4	0.986	INTERGENIC
2L	15321645	2L_15321645_SNP [dm3] 2L_15321645_SNP [dm6]	T	A	5.006e^-4	0.986	INTERGENIC
2R	3010082	2R_3010082_SNP [dm3] 2R_7122577_SNP [dm6]	G	A	5.013e^-4	0.986	INTRON esn
3L	9066428	3L_9066428_SNP [dm3] 3L_9073328_SNP [dm6]	A	T	5.019e^-4	0.986	NON_SYNONYMOUS_CODING CG4942 UPSTREAM CG4911	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
4	494445	4_494445_SNP [dm3] 4_473819_SNP [dm6]	G	A	5.020e^-4	0.986	INTRON Asator
2L	8702038	2L_8702038_SNP [dm3] 2L_8702038_SNP [dm6]	G	A	5.021e^-4	0.986	INTRON Hnf4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	8702813	2L_8702813_SNP [dm3] 2L_8702813_SNP [dm6]	A	C	5.021e^-4	0.986	UPSTREAM CR44992 INTRON Hnf4	TF binding site BDTNP1_TFBS_twi
2R	11934010	2R_11934010_SNP [dm3] 2R_16046505_SNP [dm6]	T	C	5.022e^-4	0.986	UTR_3_PRIME SP2353 DOWNSTREAM SP2353
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	5.023e^-4	0.986	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18113290	2L_18113290_SNP [dm3] 2L_18113290_SNP [dm6]	C	T	5.023e^-4	0.986	UPSTREAM CG44476 INTERGENIC
2L	18113291	2L_18113291_SNP [dm3] 2L_18113291_SNP [dm6]	A	T	5.023e^-4	0.986	UPSTREAM CG44476 INTERGENIC
2R	17785404	2R_17785404_SNP [dm3] 2R_21897899_SNP [dm6]	C	T	5.025e^-4	0.986	INTRON Fili
3L	12354566	3L_12354566_SNP [dm3] 3L_12361466_SNP [dm6]	A	G	5.028e^-4	0.986	INTERGENIC
X	4584286	X_4584286_SNP [dm3] X_4690253_SNP [dm6]	A	G	5.036e^-4	0.986	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	5.039e^-4	0.986	UTR_3_PRIME CG31030
2R	20092704	2R_20092704_SNP [dm3] 2R_24205181_SNP [dm6]	G	T	5.042e^-4	0.986	UTR_3_PRIME CG11406 INTRON CG11406
2L	6953773	2L_6953773_SNP [dm3] 2L_6953773_SNP [dm6]	C	T	5.054e^-4	0.986	DOWNSTREAM CG13775 INTRON SA
2L	6129858	2L_6129858_SNP [dm3] 2L_6129858_SNP [dm6]	G	C	5.057e^-4	0.986	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18857977	2R_18857977_SNP [dm3] 2R_22970454_SNP [dm6]	T	C	5.059e^-4	0.986	INTERGENIC
3L	2081164	3L_2081164_SNP [dm3] 3L_2081164_SNP [dm6]	G	C	5.068e^-4	0.986	SYNONYMOUS_CODING sls INTRON sls
2L	5556044	2L_5556044_SNP [dm3] 2L_5556044_SNP [dm6]	A	G	5.081e^-4	0.986	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2L	13080231	2L_13080231_SNP [dm3] 2L_13080231_SNP [dm6]	G	A	5.083e^-4	0.986	INTERGENIC
2L	9562632	2L_9562632_DEL [dm3] 2L_9562632_DEL [dm6]	CGACTATGCACTTACAC...	C	5.084e^-4	0.986	INTRON jp
2L	1787163	2L_1787163_SNP [dm3] 2L_1787163_SNP [dm6]	G	C	5.086e^-4	0.986	INTERGENIC
2L	19441539	2L_19441539_SNP [dm3] 2L_19441539_SNP [dm6]	C	T	5.089e^-4	0.986	UPSTREAM CG10237 & 1 other INTRON CG10237
2L	19442078	2L_19442078_SNP [dm3] 2L_19442078_SNP [dm6]	T	C	5.089e^-4	0.986	UTR_5_PRIME RanGAP UPSTREAM CG10237 DOWNSTREAM Hs2st INTRON CG10237
2L	9556456	2L_9556456_SNP [dm3] 2L_9556456_SNP [dm6]	A	T	5.103e^-4	0.986	INTRON jp
2L	17602288	2L_17602288_SNP [dm3] 2L_17602288_SNP [dm6]	T	C	5.108e^-4	0.986	SYNONYMOUS_CODING Sytalpha
X	20959267	X_20959267_INS [dm3] X_21088240_INS [dm6]	T	TTT	5.109e^-4	0.986	INTERGENIC
2L	10579985	2L_10579985_SNP [dm3] 2L_10579985_SNP [dm6]	T	A	5.118e^-4	0.986	DOWNSTREAM CG34161 INTRON Trim9 & 1 other
3L	11698343	3L_11698343_SNP [dm3] 3L_11705243_SNP [dm6]	C	A	5.121e^-4	0.986	INTRON CG11658
2L	9566266	2L_9566266_SNP [dm3] 2L_9566266_SNP [dm6]	T	A	5.125e^-4	0.986	UPSTREAM jp INTRON jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7864830	3L_7864830_SNP [dm3] 3L_7871730_SNP [dm6]	G	A	5.136e^-4	0.986	INTRON CG32365
2L	6238123	2L_6238123_SNP [dm3] 2L_6238123_SNP [dm6]	C	T	5.144e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3L	6764499	3L_6764499_SNP [dm3] 3L_6771399_SNP [dm6]	C	T	5.145e^-4	0.986	INTERGENIC
2L	17753076	2L_17753076_SNP [dm3] 2L_17753076_SNP [dm6]	C	G	5.147e^-4	0.986	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	5.147e^-4	0.986	INTERGENIC
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	5.148e^-4	0.986	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
2L	4891709	2L_4891709_SNP [dm3] 2L_4891709_SNP [dm6]	G	A	5.148e^-4	0.986	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5138295	2L_5138295_SNP [dm3] 2L_5138295_SNP [dm6]	C	T	5.154e^-4	0.986	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	7105140	3L_7105140_INS [dm3] 3L_7112040_INS [dm6]	A	AA	5.154e^-4	0.986	INTRON form3
3R	22541875	3R_22541875_SNP [dm3] 3R_26716153_SNP [dm6]	G	A	5.161e^-4	0.986	SYNONYMOUS_CODING CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	5.164e^-4	0.986	INTRON spri
2R	16514473	2R_16514473_SNP [dm3] 2R_20626968_SNP [dm6]	A	T	5.164e^-4	0.986	SYNONYMOUS_CODING CG16742
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	5.175e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	12846468	2L_12846468_SNP [dm3] 2L_12846468_SNP [dm6]	A	T	5.192e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	1615122	3R_1615122_INS [dm3] 3R_5789400_INS [dm6]	A	AT	5.193e^-4	0.986	UPSTREAM Rpn5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	5067570	X_5067570_SNP [dm3] X_5173537_SNP [dm6]	G	A	5.207e^-4	0.986	INTRON rg & 1 other
3L	19244186	3L_19244186_SNP [dm3] 3L_19251086_SNP [dm6]	C	T	5.207e^-4	0.986	INTERGENIC
3L	14018743	3L_14018743_SNP [dm3] 3L_14025643_SNP [dm6]	G	T	5.213e^-4	0.986	SYNONYMOUS_CODING ptip
2L	11018907	2L_11018907_SNP [dm3] 2L_11018907_SNP [dm6]	A	T	5.221e^-4	0.986	DOWNSTREAM CG14913 INTRON Samuel
3R	21099328	3R_21099328_SNP [dm3] 3R_25273606_SNP [dm6]	G	A	5.229e^-4	0.986	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
X	9223038	X_9223038_SNP [dm3] X_9329005_SNP [dm6]	A	T	5.240e^-4	0.986	DOWNSTREAM CG34450 INTRON CG34449
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	5.241e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19340495	3R_19340495_SNP [dm3] 3R_23514773_SNP [dm6]	T	C	5.249e^-4	0.986	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7404313	2R_7404313_SNP [dm3] 2R_11516808_SNP [dm6]	T	C	5.255e^-4	0.986	INTERGENIC
2L	15612390	2L_15612390_SNP [dm3] 2L_15612390_SNP [dm6]	G	T	5.260e^-4	0.986	UPSTREAM CG15255 DOWNSTREAM CG11864 INTERGENIC
3L	13230726	3L_13230726_SNP [dm3] 3L_13237626_SNP [dm6]	A	G	5.260e^-4	0.986	INTRON caps	TF binding site mE1_TFBS_HSA
3L	11759566	3L_11759566_INS [dm3] 3L_11766466_INS [dm6]	C	CA	5.269e^-4	0.986	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	21099496	3R_21099496_SNP [dm3] 3R_25273774_SNP [dm6]	A	C	5.290e^-4	0.986	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	18169117	2L_18169117_SNP [dm3] 2L_18169117_SNP [dm6]	A	T	5.291e^-4	0.986	INTRON CG42750	TF binding site mE1_TFBS_inv
2L	18573998	2L_18573998_SNP [dm3] 2L_18573998_SNP [dm6]	T	A	5.291e^-4	0.986	INTRON Pde11
2R	13060126	2R_13060126_SNP [dm3] 2R_17172621_SNP [dm6]	G	A	5.292e^-4	0.986	INTERGENIC
2R	16788613	2R_16788613_SNP [dm3] 2R_20901108_SNP [dm6]	G	A	5.295e^-4	0.986	INTRON otp	TF binding site mE1_TFBS_HSA
2L	5137894	2L_5137894_SNP [dm3] 2L_5137894_SNP [dm6]	T	C	5.310e^-4	0.986	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	19272347	3L_19272347_SNP [dm3] 3L_19279247_SNP [dm6]	A	T	5.322e^-4	0.986	DOWNSTREAM CG14089 INTRON CG14086
2L	5686444	2L_5686444_SNP [dm3] 2L_5686444_SNP [dm6]	C	T	5.325e^-4	0.986	INTERGENIC
2L	18173290	2L_18173290_SNP [dm3] 2L_18173290_SNP [dm6]	T	C	5.331e^-4	0.986	INTRON CG42750
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	5.334e^-4	0.986	INTERGENIC
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	5.336e^-4	0.986	INTRON unc-13-4A
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	5.343e^-4	0.986	INTRON hdc
2L	12117787	2L_12117787_SNP [dm3] 2L_12117787_SNP [dm6]	T	C	5.347e^-4	0.986	INTRON CG17211
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	5.348e^-4	0.986	UTR_3_PRIME dpr3
2L	9570094	2L_9570094_SNP [dm3] 2L_9570094_SNP [dm6]	A	T	5.348e^-4	0.986	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	5.354e^-4	0.986	INTRON nkd
X	3338941	X_3338941_SNP [dm3] X_3444908_SNP [dm6]	A	C	5.355e^-4	0.986	INTRON CR44999 & 1 other
3L	7858681	3L_7858681_SNP [dm3] 3L_7865581_SNP [dm6]	T	C	5.359e^-4	0.986	INTRON Pdp1	TF binding site mE1_TFBS_HSA
X	6484376	X_6484376_SNP [dm3] X_6590343_SNP [dm6]	A	G	5.361e^-4	0.986	SYNONYMOUS_CODING CG17717 UPSTREAM Pat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16082816	X_16082816_SNP [dm3] X_16188783_SNP [dm6]	G	C	5.366e^-4	0.986	INTERGENIC
2L	5686453	2L_5686453_SNP [dm3] 2L_5686453_SNP [dm6]	T	C	5.367e^-4	0.986	INTERGENIC
2L	6890913	2L_6890913_SNP [dm3] 2L_6890913_SNP [dm6]	T	A	5.375e^-4	0.986	INTRON Nlg2
2R	11335948	2R_11335948_SNP [dm3] 2R_15448443_SNP [dm6]	C	T	5.378e^-4	0.986	INTRON CG43729
3R	21065389	3R_21065389_SNP [dm3] 3R_25239667_SNP [dm6]	C	T	5.379e^-4	0.986	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
3L	12997711	3L_12997711_DEL [dm3] 3L_13004611_DEL [dm6]	GCCGGGGCTTCGCTTGCATT...	G	5.387e^-4	0.986	INTERGENIC
2R	6588086	2R_6588086_SNP [dm3] 2R_10700581_SNP [dm6]	T	C	5.391e^-4	0.986	INTRON stan
2L	4301796	2L_4301796_SNP [dm3] 2L_4301796_SNP [dm6]	T	C	5.409e^-4	0.986	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18302517	2L_18302517_SNP [dm3] 2L_18302517_SNP [dm6]	G	A	5.428e^-4	0.986	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	2567945	X_2567945_SNP [dm3] X_2673912_SNP [dm6]	T	A	5.430e^-4	0.986	NON_SYNONYMOUS_CODING sgg INTRON sgg

By genomic position
Variant impact
Gene name

Tibia_Length_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results