DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.881e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.002544

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	8.4792	0.0144

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1763 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	5.958e^-7	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.885e^-6	1	DOWNSTREAM CR44629 & 1 other INTERGENIC
3R	22502604	3R_22502604_SNP [dm3] 3R_26676882_SNP [dm6]	A	G	2.782e^-6	1	INTRON beat-VII
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	3.284e^-6	1	UTR_3_PRIME CG31030
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	6.643e^-6	1	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8147928	3L_8147928_SNP [dm3] 3L_8154828_SNP [dm6]	T	C	7.816e^-6	1	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	7.923e^-6	1	INTRON CG6154
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	9.410e^-6	1	INTRON bnl
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	9.947e^-6	1	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20839679	3R_20839679_SNP [dm3] 3R_25013957_SNP [dm6]	G	C	1.161e^-5	1	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	1.216e^-5	1	NON_SYNONYMOUS_CODING mbc
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	1.487e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	1.532e^-5	1	UPSTREAM dnc INTRON dnc
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	1.544e^-5	1	INTRON CG9541
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	1.570e^-5	1	UTR_3_PRIME CG31030
2L	12112962	2L_12112962_SNP [dm3] 2L_12112962_SNP [dm6]	C	A	1.644e^-5	1	DOWNSTREAM Phae2 INTERGENIC
3R	25993011	3R_25993011_SNP [dm3] 3R_30167289_SNP [dm6]	A	T	1.655e^-5	1	UPSTREAM CG31030 INTRON CG31028
X	2566309	X_2566309_DEL [dm3] X_2672276_DEL [dm6]	ATCATGACTAC...	G	1.773e^-5	1	INTRON sgg
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	1.894e^-5	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9947631	3L_9947631_SNP [dm3] 3L_9954531_SNP [dm6]	T	C	2.031e^-5	1	INTRON CG34356
X	2566359	X_2566359_SNP [dm3] X_2672326_SNP [dm6]	C	T	2.152e^-5	1	INTRON sgg
3L	4308579	3L_4308579_SNP [dm3] 3L_4308579_SNP [dm6]	A	T	2.167e^-5	1	UPSTREAM dyl INTERGENIC
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	2.329e^-5	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	2.441e^-5	1	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	2.496e^-5	1	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	1793737	3L_1793737_SNP [dm3] 3L_1793737_SNP [dm6]	G	A	2.526e^-5	1	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_dl
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	2.549e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	2.615e^-5	1	INTRON fas
2R	6586562	2R_6586562_SNP [dm3] 2R_10699057_SNP [dm6]	T	C	2.710e^-5	1	INTRON stan
3L	4308801	3L_4308801_SNP [dm3] 3L_4308801_SNP [dm6]	G	A	2.732e^-5	1	INTERGENIC
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	2.774e^-5	1	INTRON fas
2L	16197268	2L_16197268_SNP [dm3] 2L_16197268_SNP [dm6]	G	A	2.943e^-5	1	INTERGENIC
2L	1954616	2L_1954616_SNP [dm3] 2L_1954616_SNP [dm6]	G	A	3.014e^-5	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	3.038e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19411953	2L_19411953_SNP [dm3] 2L_19411953_SNP [dm6]	A	T	3.138e^-5	1	UPSTREAM Pax INTRON Pax
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	3.152e^-5	1	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
2L	1105144	2L_1105144_SNP [dm3] 2L_1105144_SNP [dm6]	C	G	3.162e^-5	1	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	3.210e^-5	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	3.226e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	3.228e^-5	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16288477	2R_16288477_SNP [dm3] 2R_20400972_SNP [dm6]	A	G	3.278e^-5	1	INTERGENIC
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	3.279e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	3.281e^-5	1	INTERGENIC
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	3.301e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	3.398e^-5	1	INTERGENIC
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	3.516e^-5	1	INTRON trol
3L	18882511	3L_18882511_SNP [dm3] 3L_18889411_SNP [dm6]	G	A	3.612e^-5	1	INTRON CG3961
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	3.691e^-5	1	INTRON shep
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	3.736e^-5	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2R	11155675	2R_11155675_SNP [dm3] 2R_15268170_SNP [dm6]	G	A	3.783e^-5	1	SYNONYMOUS_CODING Trpm
2L	9149896	2L_9149896_SNP [dm3] 2L_9149896_SNP [dm6]	C	T	3.850e^-5	1	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25823013	3R_25823013_SNP [dm3] 3R_29997291_SNP [dm6]	T	G	3.882e^-5	1	SYNONYMOUS_CODING CG15525 UPSTREAM CG11504 DOWNSTREAM Sas-6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	3.892e^-5	1	INTRON CG32365
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	3.967e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
X	22078695	X_22078695_SNP [dm3] X_22676859_SNP [dm6]	T	A	4.014e^-5	1	INTRON CR44997
X	20005864	X_20005864_INS [dm3] X_20111831_INS [dm6]	C	CCACACTT	4.045e^-5	1	INTERGENIC
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	4.200e^-5	1	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3R	10114736	3R_10114736_SNP [dm3] 3R_14289014_SNP [dm6]	G	A	4.318e^-5	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
X	20005872	X_20005872_SNP [dm3] X_20111839_SNP [dm6]	C	A	4.408e^-5	1	INTERGENIC
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	4.419e^-5	1	INTERGENIC
3L	12026050	3L_12026050_SNP [dm3] 3L_12032950_SNP [dm6]	T	C	4.558e^-5	1	UTR_3_PRIME CG43993 INTRON rols
2L	4457054	2L_4457054_SNP [dm3] 2L_4457054_SNP [dm6]	A	G	4.578e^-5	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC
2L	11368632	2L_11368632_SNP [dm3] 2L_11368632_SNP [dm6]	A	T	4.630e^-5	1	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
3R	14221089	3R_14221089_SNP [dm3] 3R_18395367_SNP [dm6]	T	A	4.631e^-5	1	INTRON Vha100-2
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	4.638e^-5	1	INTRON drd
2L	1955706	2L_1955706_SNP [dm3] 2L_1955706_SNP [dm6]	G	T	4.693e^-5	1	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	26001227	3R_26001227_SNP [dm3] 3R_30175505_SNP [dm6]	G	A	4.720e^-5	1	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3R	22125750	3R_22125750_SNP [dm3] 3R_26300028_SNP [dm6]	C	T	4.853e^-5	1	INTERGENIC
X	3184944	X_3184944_SNP [dm3] X_3290911_SNP [dm6]	T	G	4.882e^-5	1	UPSTREAM dnc INTRON dnc
3L	5589687	3L_5589687_SNP [dm3] 3L_5596587_SNP [dm6]	G	A	4.887e^-5	1	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	4.894e^-5	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	4456741	2L_4456741_SNP [dm3] 2L_4456741_SNP [dm6]	T	C	4.895e^-5	1	UTR_5_PRIME Gs1l DOWNSTREAM RpL27A & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	18039551	2R_18039551_SNP [dm3] 2R_22152046_SNP [dm6]	G	T	4.919e^-5	1	INTRON a
X	20006044	X_20006044_SNP [dm3] X_20112011_SNP [dm6]	A	C	4.974e^-5	1	INTERGENIC
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	4.977e^-5	1	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3R	20844506	3R_20844506_SNP [dm3] 3R_25018784_SNP [dm6]	C	T	5.088e^-5	1	SYNONYMOUS_CODING tnc
2R	8759074	2R_8759074_SNP [dm3] 2R_12871569_SNP [dm6]	A	G	5.147e^-5	1	UTR_3_PRIME bic DOWNSTREAM bic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	12141756	X_12141756_SNP [dm3] X_12247723_SNP [dm6]	A	T	5.169e^-5	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	15168758	3R_15168758_SNP [dm3] 3R_19343036_SNP [dm6]	G	A	5.241e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	5.254e^-5	1	DOWNSTREAM mbl INTRON mbl
3R	13492332	3R_13492332_SNP [dm3] 3R_17666610_SNP [dm6]	T	G	5.341e^-5	1	UPSTREAM CR45045 INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	5.365e^-5	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
2L	8972265	2L_8972265_SNP [dm3] 2L_8972265_SNP [dm6]	C	A	5.413e^-5	1	SYNONYMOUS_CODING CG9541
2R	8922095	2R_8922095_INS [dm3] 2R_13034590_INS [dm6]	A	AGCG	5.488e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8922093	2R_8922093_SNP [dm3] 2R_13034588_SNP [dm6]	A	G	5.518e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	16236466	2L_16236466_SNP [dm3] 2L_16236466_SNP [dm6]	T	C	5.574e^-5	1	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
X	2755744	X_2755744_INS [dm3] X_2861711_INS [dm6]	G	GG	5.644e^-5	1	INTRON kirre
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	5.661e^-5	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	5.697e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	5.704e^-5	1	INTRON bbg
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	5.728e^-5	1	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	5.767e^-5	1	DOWNSTREAM CG17199 INTRON Nlg4
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	5.797e^-5	1	INTRON CG13917
2R	8922117	2R_8922117_SNP [dm3] 2R_13034612_SNP [dm6]	A	T	5.802e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	10114753	3R_10114753_SNP [dm3] 3R_14289031_SNP [dm6]	G	T	5.851e^-5	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
X	2566553	X_2566553_INS [dm3] X_2672520_INS [dm6]	G	GCTTG	5.857e^-5	1	INTRON sgg
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	5.935e^-5	1	INTRON fas
3R	25240868	3R_25240868_INS [dm3] 3R_29415146_INS [dm6]	G	GG	5.943e^-5	1	INTRON Ptp99A
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	5.978e^-5	1	SPLICE_SITE_REGION tow INTRON tow
X	22076525	X_22076525_SNP [dm3] X_22674689_SNP [dm6]	C	G	5.981e^-5	1	INTRON CR44997
3R	25343315	3R_25343315_SNP [dm3] 3R_29517593_SNP [dm6]	C	G	6.037e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25343321	3R_25343321_SNP [dm3] 3R_29517599_SNP [dm6]	A	C	6.037e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	25343335	3R_25343335_SNP [dm3] 3R_29517613_SNP [dm6]	T	G	6.037e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	19782226	X_19782226_SNP [dm3] X_19888193_SNP [dm6]	T	G	6.075e^-5	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12845189	X_12845189_SNP [dm3] X_12951156_SNP [dm6]	T	A	6.168e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	6.284e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	6.303e^-5	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2R	15272579	2R_15272579_SNP [dm3] 2R_19385074_SNP [dm6]	T	C	6.305e^-5	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	6.357e^-5	1	NON_SYNONYMOUS_CODING CG32984
2R	10988647	2R_10988647_SNP [dm3] 2R_15101142_SNP [dm6]	C	G	6.550e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
X	19782224	X_19782224_SNP [dm3] X_19888191_SNP [dm6]	G	A	6.611e^-5	1	START_GAINED amn UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	9272129	3L_9272129_SNP [dm3] 3L_9279029_SNP [dm6]	G	A	6.779e^-5	1	INTRON GluRIB
2R	7638329	2R_7638329_SNP [dm3] 2R_11750824_SNP [dm6]	G	C	6.932e^-5	1	INTERGENIC
3L	9088315	3L_9088315_SNP [dm3] 3L_9095215_SNP [dm6]	A	G	6.958e^-5	1	DOWNSTREAM CG32032 INTERGENIC
3R	25343389	3R_25343389_SNP [dm3] 3R_29517667_SNP [dm6]	T	A	6.984e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	7.109e^-5	1	INTERGENIC
3R	20839829	3R_20839829_SNP [dm3] 3R_25014107_SNP [dm6]	C	T	7.156e^-5	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	7.270e^-5	1	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	7536172	2L_7536172_SNP [dm3] 2L_7536172_SNP [dm6]	G	A	7.336e^-5	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	20839824	3R_20839824_SNP [dm3] 3R_25014102_SNP [dm6]	G	A	7.375e^-5	1	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	7.460e^-5	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17150915	3R_17150915_INS [dm3] 3R_21325193_INS [dm6]	A	AA	7.636e^-5	1	INTRON CG16791
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	7.684e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	16920485	2R_16920485_SNP [dm3] 2R_21032980_SNP [dm6]	C	T	7.702e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9511383	2L_9511383_SNP [dm3] 2L_9511383_SNP [dm6]	C	G	7.822e^-5	1	INTRON CG33298
X	12845176	X_12845176_SNP [dm3] X_12951143_SNP [dm6]	A	G	7.829e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	7.841e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	8.029e^-5	1	UPSTREAM CG5890 INTRON CG5890
2R	15274865	2R_15274865_SNP [dm3] 2R_19387360_SNP [dm6]	T	G	8.039e^-5	1	INTRON CG10081
3R	26000918	3R_26000918_SNP [dm3] 3R_30175196_SNP [dm6]	C	T	8.102e^-5	1	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	8.184e^-5	1	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2R	8922229	2R_8922229_SNP [dm3] 2R_13034724_SNP [dm6]	T	A	8.205e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25927653	3R_25927653_SNP [dm3] 3R_30101931_SNP [dm6]	T	A	8.207e^-5	1	INTRON sima
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	8.228e^-5	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	8.284e^-5	1	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	8922092	2R_8922092_SNP [dm3] 2R_13034587_SNP [dm6]	C	T	8.385e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	8.404e^-5	1	INTRON CG32365
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	8.405e^-5	1	INTRON stan
3L	9025348	3L_9025348_SNP [dm3] 3L_9032248_SNP [dm6]	T	C	8.463e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13040861	3L_13040861_SNP [dm3] 3L_13047761_SNP [dm6]	T	C	8.481e^-5	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6204209	2L_6204209_SNP [dm3] 2L_6204209_SNP [dm6]	C	T	8.526e^-5	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	8.526e^-5	1	DOWNSTREAM CG8086 & 1 other INTRON CG43057
X	12845227	X_12845227_SNP [dm3] X_12951194_SNP [dm6]	G	T	8.606e^-5	1	UTR_3_PRIME hec DOWNSTREAM fne
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	8.683e^-5	1	UTR_3_PRIME Sema-2a
3R	22530093	3R_22530093_SNP [dm3] 3R_26704371_SNP [dm6]	T	G	8.694e^-5	1	INTRON amon
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	8.708e^-5	1	INTRON bbg
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	8.724e^-5	1	SYNONYMOUS_CODING CG15210 INTRON sbr
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	8.734e^-5	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16329169	2R_16329169_SNP [dm3] 2R_20441664_SNP [dm6]	T	A	8.744e^-5	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
3R	12689075	3R_12689075_SNP [dm3] 3R_16863353_SNP [dm6]	A	G	8.813e^-5	1	INTRON iab-8
2L	1111201	2L_1111201_SNP [dm3] 2L_1111201_SNP [dm6]	C	T	8.943e^-5	1	INTRON CG14339
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	8.964e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25136442	3R_25136442_SNP [dm3] 3R_29310720_SNP [dm6]	A	G	9.066e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	9.069e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	9.095e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	15272578	2R_15272578_SNP [dm3] 2R_19385073_SNP [dm6]	C	T	9.141e^-5	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	11155749	2R_11155749_SNP [dm3] 2R_15268244_SNP [dm6]	T	C	9.356e^-5	1	INTRON Trpm
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	9.464e^-5	1	INTERGENIC
2R	15324032	2R_15324032_SNP [dm3] 2R_19436527_SNP [dm6]	G	T	9.481e^-5	1	UPSTREAM Spt5 INTRON Fak	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15163581	3R_15163581_SNP [dm3] 3R_19337859_SNP [dm6]	T	C	9.512e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17720052	2R_17720052_SNP [dm3] 2R_21832547_SNP [dm6]	G	T	9.514e^-5	1	UTR_3_PRIME CG34040
2R	15272573	2R_15272573_SNP [dm3] 2R_19385068_SNP [dm6]	G	A	9.533e^-5	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	9.781e^-5	1	SYNONYMOUS_CODING CG9850
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	9.805e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	9.805e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	9.830e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
X	19781989	X_19781989_SNP [dm3] X_19887956_SNP [dm6]	T	C	9.849e^-5	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	1.006e^-4	1	UTR_3_PRIME Sema-2a
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	1.031e^-4	1	INTRON trol
3R	15100369	3R_15100369_DEL [dm3] 3R_19274647_DEL [dm6]	AA	A	1.041e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	1.042e^-4	1	INTRON CG34377
2L	4457009	2L_4457009_SNP [dm3] 2L_4457009_SNP [dm6]	G	C	1.042e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	9896415	3R_9896415_INS [dm3] 3R_14070693_INS [dm6]	A	AATTCA	1.056e^-4	1	INTRON foxo
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	1.063e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3184937	X_3184937_DEL [dm3] X_3290904_DEL [dm6]	AA	G	1.064e^-4	1	UPSTREAM dnc INTRON dnc
X	16848533	X_16848533_SNP [dm3] X_16954500_SNP [dm6]	T	A	1.065e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4456877	2L_4456877_SNP [dm3] 2L_4456877_SNP [dm6]	A	T	1.073e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	3471122	2L_3471122_SNP [dm3] 2L_3471122_SNP [dm6]	T	A	1.076e^-4	1	INTRON CG31776
3R	25990574	3R_25990574_SNP [dm3] 3R_30164852_SNP [dm6]	C	T	1.086e^-4	1	UTR_3_PRIME CG31030
2R	16326340	2R_16326340_SNP [dm3] 2R_20438835_SNP [dm6]	G	A	1.088e^-4	1	INTRON CG12484
3L	12847350	3L_12847350_SNP [dm3] 3L_12854250_SNP [dm6]	T	C	1.096e^-4	1	SYNONYMOUS_CODING Ent3
3L	1583345	3L_1583345_SNP [dm3] 3L_1583345_SNP [dm6]	C	T	1.101e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	3171080	X_3171080_SNP [dm3] X_3277047_SNP [dm6]	T	C	1.121e^-4	1	INTRON dnc
X	15028088	X_15028088_SNP [dm3] X_15134055_SNP [dm6]	T	A	1.130e^-4	1	INTRON drd
2R	19181153	2R_19181153_SNP [dm3] 2R_23293630_SNP [dm6]	C	T	1.133e^-4	1	INTERGENIC
2R	16919627	2R_16919627_SNP [dm3] 2R_21032122_SNP [dm6]	T	A	1.134e^-4	1	INTERGENIC
X	15028087	X_15028087_SNP [dm3] X_15134054_SNP [dm6]	A	G	1.139e^-4	1	INTRON drd
3R	22901000	3R_22901000_SNP [dm3] 3R_27075278_SNP [dm6]	A	T	1.142e^-4	1	UPSTREAM CG14257 INTERGENIC
2L	4847184	2L_4847184_SNP [dm3] 2L_4847184_SNP [dm6]	T	C	1.149e^-4	1	UTR_5_PRIME mxt UPSTREAM mxt & 1 other INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13040774	3L_13040774_SNP [dm3] 3L_13047674_SNP [dm6]	T	C	1.149e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	1.153e^-4	1	UPSTREAM CG44476 INTERGENIC
3R	1615087	3R_1615087_SNP [dm3] 3R_5789365_SNP [dm6]	G	A	1.153e^-4	1	UTR_5_PRIME CG2051 UPSTREAM Rpn5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
X	12601069	X_12601069_SNP [dm3] X_12707036_SNP [dm6]	C	T	1.170e^-4	1	NON_SYNONYMOUS_CODING CG15725 INTRON Smr
X	19782222	X_19782222_SNP [dm3] X_19888189_SNP [dm6]	T	A	1.184e^-4	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4308391	3L_4308391_SNP [dm3] 3L_4308391_SNP [dm6]	T	A	1.193e^-4	1	UPSTREAM dyl INTERGENIC
X	14955301	X_14955301_SNP [dm3] X_15061268_SNP [dm6]	A	T	1.194e^-4	1	INTRON hiw
3L	4050761	3L_4050761_SNP [dm3] 3L_4050761_SNP [dm6]	A	G	1.199e^-4	1	INTRON CG1136	TF binding site BDTNP1_TFBS_sna
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	1.207e^-4	1	INTRON CG34362
2L	12112948	2L_12112948_SNP [dm3] 2L_12112948_SNP [dm6]	C	T	1.211e^-4	1	DOWNSTREAM Phae2 INTERGENIC
3R	21585510	3R_21585510_SNP [dm3] 3R_25759788_SNP [dm6]	T	G	1.234e^-4	1	INTRON LpR1
3L	7641337	3L_7641337_SNP [dm3] 3L_7648237_SNP [dm6]	T	A	1.237e^-4	1	INTERGENIC
3R	13648640	3R_13648640_SNP [dm3] 3R_17822918_SNP [dm6]	G	A	1.245e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5890117	2L_5890117_INS [dm3] 2L_5890117_INS [dm6]	A	AA	1.245e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20005863	X_20005863_SNP [dm3] X_20111830_SNP [dm6]	A	T	1.251e^-4	1	INTERGENIC
3R	26559040	3R_26559040_SNP [dm3] 3R_30733318_SNP [dm6]	C	A	1.253e^-4	1	INTERGENIC
3R	22515084	3R_22515084_SNP [dm3] 3R_26689362_SNP [dm6]	G	C	1.261e^-4	1	INTERGENIC
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	1.274e^-4	1	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	1.278e^-4	1	INTRON hdc
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	1.286e^-4	1	INTRON CG1461
2R	6177663	2R_6177663_DEL [dm3] 2R_10290158_DEL [dm6]	CCATGTA	T	1.287e^-4	1	UPSTREAM CAP INTRON CAP
2R	8922291	2R_8922291_SNP [dm3] 2R_13034786_SNP [dm6]	G	A	1.296e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22515239	3R_22515239_SNP [dm3] 3R_26689517_SNP [dm6]	G	T	1.304e^-4	1	INTERGENIC
2R	13575451	2R_13575451_SNP [dm3] 2R_17687946_SNP [dm6]	C	T	1.306e^-4	1	SPLICE_SITE_REGION HPS4 SYNONYMOUS_CODING HPS4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6941033	3L_6941033_SNP [dm3] 3L_6947933_SNP [dm6]	T	G	1.323e^-4	1	INTRON tow
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	1.328e^-4	1	INTRON CG34362
2L	1025131	2L_1025131_SNP [dm3] 2L_1025131_SNP [dm6]	C	T	1.337e^-4	1	DOWNSTREAM CG4375 INTRON IA-2
2R	6177659	2R_6177659_DEL [dm3] 2R_10290154_DEL [dm6]	TA	T	1.340e^-4	1	UPSTREAM CAP INTRON CAP
2R	15925695	2R_15925695_SNP [dm3] 2R_20038190_SNP [dm6]	A	C	1.356e^-4	1	INTERGENIC
3L	14022550	3L_14022550_SNP [dm3] 3L_14029450_SNP [dm6]	G	A	1.364e^-4	1	UPSTREAM ptip DOWNSTREAM endos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	1.367e^-4	1	INTERGENIC
2L	8087348	2L_8087348_SNP [dm3] 2L_8087348_SNP [dm6]	T	C	1.368e^-4	1	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cnc
2L	7536173	2L_7536173_SNP [dm3] 2L_7536173_SNP [dm6]	T	C	1.370e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7536177	2L_7536177_SNP [dm3] 2L_7536177_SNP [dm6]	G	A	1.370e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7103524	2R_7103524_SNP [dm3] 2R_11216019_SNP [dm6]	G	A	1.373e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16034541	3R_16034541_SNP [dm3] 3R_20208819_SNP [dm6]	C	T	1.377e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	19645313	2R_19645313_SNP [dm3] 2R_23757790_SNP [dm6]	G	T	1.382e^-4	1	SYNONYMOUS_CODING CG9850
3L	1796408	3L_1796408_SNP [dm3] 3L_1796408_SNP [dm6]	G	A	1.384e^-4	1	SYNONYMOUS_CODING Cdc37 UPSTREAM CG12020	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	1.393e^-4	1	INTRON Pkc53E
X	2379381	X_2379381_SNP [dm3] X_2485348_SNP [dm6]	A	C	1.420e^-4	1	INTRON trol
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	1.431e^-4	1	INTRON beat-Ib
2R	3509956	2R_3509956_SNP [dm3] 2R_7622451_SNP [dm6]	C	G	1.449e^-4	1	UPSTREAM CG43340 EXON CR44444
2L	8972903	2L_8972903_SNP [dm3] 2L_8972903_SNP [dm6]	G	T	1.473e^-4	1	INTRON CG9541
2R	15272566	2R_15272566_SNP [dm3] 2R_19385061_SNP [dm6]	A	T	1.473e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2R	15272567	2R_15272567_SNP [dm3] 2R_19385062_SNP [dm6]	T	A	1.473e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3R	22530140	3R_22530140_INS [dm3] 3R_26704418_INS [dm6]	A	AA	1.479e^-4	1	INTRON amon
3R	16894862	3R_16894862_SNP [dm3] 3R_21069140_SNP [dm6]	T	C	1.479e^-4	1	INTRON AnxB9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8922235	2R_8922235_SNP [dm3] 2R_13034730_SNP [dm6]	G	A	1.497e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	15272510	2R_15272510_SNP [dm3] 2R_19385005_SNP [dm6]	G	T	1.498e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	722619	2L_722619_SNP [dm3] 2L_722619_SNP [dm6]	C	T	1.514e^-4	1	INTERGENIC
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	1.517e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5589426	3L_5589426_SNP [dm3] 3L_5596326_SNP [dm6]	G	A	1.519e^-4	1	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17301021	2R_17301021_SNP [dm3] 2R_21413516_SNP [dm6]	G	C	1.526e^-4	1	INTRON Sdc
3R	25993276	3R_25993276_SNP [dm3] 3R_30167554_SNP [dm6]	G	T	1.554e^-4	1	INTRON CG31028
3L	13040896	3L_13040896_SNP [dm3] 3L_13047796_SNP [dm6]	A	T	1.556e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.560e^-4	1	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	1.565e^-4	1	UPSTREAM dnc INTRON dnc
2L	12157214	2L_12157214_SNP [dm3] 2L_12157214_SNP [dm6]	T	C	1.569e^-4	1	INTRON CG31760
2R	604993	2R_604993_SNP [dm3] 2R_4717488_SNP [dm6]	A	T	1.574e^-4	1	INTRON Nipped-B	transposable element FlyBase
3R	26001353	3R_26001353_SNP [dm3] 3R_30175631_SNP [dm6]	C	A	1.576e^-4	1	DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	1.577e^-4	1	INTRON mbc
3L	4306709	3L_4306709_SNP [dm3] 3L_4306709_SNP [dm6]	A	T	1.587e^-4	1	INTRON dyl
2L	4456955	2L_4456955_SNP [dm3] 2L_4456955_SNP [dm6]	G	A	1.592e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2L	19009551	2L_19009551_SNP [dm3] 2L_19009551_SNP [dm6]	C	T	1.593e^-4	1	UPSTREAM snoRNA:Me28S-A2113 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	7886421	3L_7886421_SNP [dm3] 3L_7893321_SNP [dm6]	G	A	1.601e^-4	1	SYNONYMOUS_CODING CG32365
3R	26209092	3R_26209092_SNP [dm3] 3R_30383370_SNP [dm6]	T	A	1.603e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11851378	3L_11851378_SNP [dm3] 3L_11858278_SNP [dm6]	G	A	1.607e^-4	1	INTRON CG44837
X	6368890	X_6368890_SNP [dm3] X_6474857_SNP [dm6]	C	T	1.609e^-4	1	INTRON CG42340
3R	13649188	3R_13649188_SNP [dm3] 3R_17823466_SNP [dm6]	A	G	1.619e^-4	1	INTRON tinc
X	15028156	X_15028156_SNP [dm3] X_15134123_SNP [dm6]	C	G	1.631e^-4	1	INTRON drd
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.636e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	13514722	3L_13514722_SNP [dm3] 3L_13521622_SNP [dm6]	A	G	1.644e^-4	1	DOWNSTREAM bru-3 INTERGENIC
X	16843732	X_16843732_SNP [dm3] X_16949699_SNP [dm6]	G	A	1.644e^-4	1	INTRON RhoGAP15B
2L	7748646	2L_7748646_SNP [dm3] 2L_7748646_SNP [dm6]	A	G	1.648e^-4	1	DOWNSTREAM CG7211 INTERGENIC
3R	12092823	3R_12092823_SNP [dm3] 3R_16267101_SNP [dm6]	G	A	1.654e^-4	1	SYNONYMOUS_CODING Mst89B DOWNSTREAM asun
2L	1953779	2L_1953779_INS [dm3] 2L_1953779_INS [dm6]	G	GCGG	1.654e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10034115	3R_10034115_SNP [dm3] 3R_14208393_SNP [dm6]	C	T	1.671e^-4	1	INTRON Dop1R1
3R	22530137	3R_22530137_SNP [dm3] 3R_26704415_SNP [dm6]	A	G	1.675e^-4	1	INTRON amon
X	12141765	X_12141765_SNP [dm3] X_12247732_SNP [dm6]	G	T	1.678e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	5824647	2L_5824647_DEL [dm3] 2L_5824647_DEL [dm6]	AATCATTAAATGCA...	A	1.690e^-4	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	1.695e^-4	1	UPSTREAM CG15403 INTRON toc
3R	23867969	3R_23867969_SNP [dm3] 3R_28042247_SNP [dm6]	G	C	1.699e^-4	1	INTRON CG34362
2L	12155220	2L_12155220_SNP [dm3] 2L_12155220_SNP [dm6]	A	T	1.704e^-4	1	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15573597	X_15573597_SNP [dm3] X_15679564_SNP [dm6]	A	G	1.711e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8922104	2R_8922104_SNP [dm3] 2R_13034599_SNP [dm6]	T	G	1.714e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	513055	3R_513055_DEL [dm3] 3R_4687333_DEL [dm6]	AACGGCACTGGTGCAGA...	A	1.719e^-4	1	INTRON CG43427	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
3R	14592523	3R_14592523_SNP [dm3] 3R_18766801_SNP [dm6]	G	A	1.745e^-4	1	INTRON CG7720
3R	15171037	3R_15171037_SNP [dm3] 3R_19345315_SNP [dm6]	G	A	1.761e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4260599	X_4260599_SNP [dm3] X_4366566_SNP [dm6]	T	A	1.771e^-4	1	UTR_5_PRIME CG3626 UPSTREAM mir-982 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	1.772e^-4	1	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	1.775e^-4	1	UTR_3_PRIME dpr3
X	14614863	X_14614863_SNP [dm3] X_14720830_SNP [dm6]	G	A	1.782e^-4	1	INTRON NetB
3L	1420811	3L_1420811_SNP [dm3] 3L_1420811_SNP [dm6]	A	G	1.783e^-4	1	DOWNSTREAM CG9173 INTRON Ptp61F
3L	4306834	3L_4306834_SNP [dm3] 3L_4306834_SNP [dm6]	G	A	1.785e^-4	1	INTRON dyl
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	1.786e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	1.798e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	15166262	3R_15166262_SNP [dm3] 3R_19340540_SNP [dm6]	A	C	1.802e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	1.815e^-4	1	INTERGENIC
2L	17995342	2L_17995342_SNP [dm3] 2L_17995342_SNP [dm6]	T	C	1.817e^-4	1	INTERGENIC
3R	14829062	3R_14829062_SNP [dm3] 3R_19003340_SNP [dm6]	G	A	1.822e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	1.830e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	1.830e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	25111269	3R_25111269_SNP [dm3] 3R_29285547_SNP [dm6]	A	T	1.832e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	8922168	2R_8922168_SNP [dm3] 2R_13034663_SNP [dm6]	T	A	1.834e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9791388	2R_9791388_SNP [dm3] 2R_13903883_SNP [dm6]	C	T	1.860e^-4	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18136475	2L_18136475_SNP [dm3] 2L_18136475_SNP [dm6]	G	A	1.870e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
3L	13040894	3L_13040894_SNP [dm3] 3L_13047794_SNP [dm6]	C	T	1.876e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4929907	3L_4929907_INS [dm3] 3L_4929907_INS [dm6]	T	TGAATAATGATACGGAATAC...	1.878e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929910	3L_4929910_SNP [dm3] 3L_4929910_SNP [dm6]	T	A	1.878e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	4929912	3L_4929912_SNP [dm3] 3L_4929912_SNP [dm6]	C	T	1.878e^-4	1	INTRON CR43627 EXON CR43627	regulatory region REDfly_CRMs
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	1.887e^-4	1	INTRON Ptp61F
X	2425183	X_2425183_SNP [dm3] X_2531150_SNP [dm6]	C	T	1.895e^-4	1	INTRON trol
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	1.899e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	1.899e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24005202	3L_24005202_SNP [dm3] 3L_24012102_SNP [dm6]	G	A	1.899e^-4	1	UPSTREAM CR40053 INTERGENIC
2R	11292861	2R_11292861_SNP [dm3] 2R_15405356_SNP [dm6]	C	A	1.909e^-4	1	DOWNSTREAM CR45020 INTRON CG43729
3L	16310448	3L_16310448_SNP [dm3] 3L_16317348_SNP [dm6]	C	A	1.912e^-4	1	UPSTREAM Nplp3 INTERGENIC
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	1.913e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	1.913e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	1.913e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.925e^-4	1	INTERGENIC
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	1.926e^-4	1	UPSTREAM CG5758 INTERGENIC
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	1.927e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	8087391	2L_8087391_SNP [dm3] 2L_8087391_SNP [dm6]	T	C	1.937e^-4	1	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
3L	5429977	3L_5429977_SNP [dm3] 3L_5436877_SNP [dm6]	T	G	1.947e^-4	1	INTRON CG34391
3L	1582779	3L_1582779_SNP [dm3] 3L_1582779_SNP [dm6]	A	T	1.949e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16890396	3R_16890396_SNP [dm3] 3R_21064674_SNP [dm6]	A	G	1.970e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	1.974e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
X	19782474	X_19782474_SNP [dm3] X_19888441_SNP [dm6]	C	T	1.995e^-4	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16848553	X_16848553_INS [dm3] X_16954520_INS [dm6]	C	TGACTTAAGA	1.996e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6782575	2L_6782575_SNP [dm3] 2L_6782575_SNP [dm6]	C	T	2.022e^-4	1	INTRON nrv1
3R	11756333	3R_11756333_SNP [dm3] 3R_15930611_SNP [dm6]	C	G	2.030e^-4	1	NON_SYNONYMOUS_CODING CG4221	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	2.042e^-4	1	SYNONYMOUS_CODING mbc
2R	13016725	2R_13016725_SNP [dm3] 2R_17129220_SNP [dm6]	T	C	2.067e^-4	1	SYNONYMOUS_CODING Cda9
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	2.071e^-4	1	INTRON kel
X	6078425	X_6078425_SNP [dm3] X_6184392_SNP [dm6]	G	A	2.071e^-4	1	INTRON Ca-alpha1T
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	2.076e^-4	1	UPSTREAM para INTERGENIC
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	2.077e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16897795	3R_16897795_SNP [dm3] 3R_21072073_SNP [dm6]	T	A	2.077e^-4	1	INTRON r-l	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19848837	3R_19848837_SNP [dm3] 3R_24023115_SNP [dm6]	G	A	2.080e^-4	1	INTRON KrT95D	TF binding site mE1_TFBS_HSA
2R	15272570	2R_15272570_SNP [dm3] 2R_19385065_SNP [dm6]	C	A	2.082e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	2.083e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6234728	2L_6234728_SNP [dm3] 2L_6234728_SNP [dm6]	G	A	2.085e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17771157	2R_17771157_SNP [dm3] 2R_21883652_SNP [dm6]	T	A	2.085e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	8627448	2R_8627448_SNP [dm3] 2R_12739943_SNP [dm6]	A	T	2.085e^-4	1	INTRON CG42663
3R	26019928	3R_26019928_SNP [dm3] 3R_30194206_SNP [dm6]	T	C	2.086e^-4	1	DOWNSTREAM CG15531 INTERGENIC
2R	3340998	2R_3340998_SNP [dm3] 2R_7453493_SNP [dm6]	A	G	2.087e^-4	1	INTERGENIC
2R	16076949	2R_16076949_SNP [dm3] 2R_20189444_SNP [dm6]	G	A	2.095e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13927092	3L_13927092_SNP [dm3] 3L_13933992_SNP [dm6]	G	T	2.108e^-4	1	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	2.111e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
2L	1210136	2L_1210136_SNP [dm3] 2L_1210136_SNP [dm6]	T	A	2.123e^-4	1	INTERGENIC
3L	4308624	3L_4308624_SNP [dm3] 3L_4308624_SNP [dm6]	C	G	2.143e^-4	1	UPSTREAM dyl INTERGENIC
2R	8922251	2R_8922251_SNP [dm3] 2R_13034746_SNP [dm6]	T	A	2.144e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12157217	2L_12157217_SNP [dm3] 2L_12157217_SNP [dm6]	A	T	2.146e^-4	1	INTRON CG31760
2L	4198265	2L_4198265_SNP [dm3] 2L_4198265_SNP [dm6]	A	G	2.156e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	2.161e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	2.165e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	2.168e^-4	1	INTRON psq
X	22076954	X_22076954_SNP [dm3] X_22675118_SNP [dm6]	C	A	2.176e^-4	1	INTRON CR44997
2L	12571249	2L_12571249_SNP [dm3] 2L_12571249_SNP [dm6]	C	T	2.196e^-4	1	UPSTREAM CR44598 EXON CR44597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12171084	X_12171084_SNP [dm3] X_12277051_SNP [dm6]	A	T	2.196e^-4	1	INTRON Ten-a
3R	16034288	3R_16034288_SNP [dm3] 3R_20208566_SNP [dm6]	G	T	2.197e^-4	1	SYNONYMOUS_CODING CG17199 INTRON Nlg4	TF binding site BDTNP1_TFBS_sna
2L	4456834	2L_4456834_SNP [dm3] 2L_4456834_SNP [dm6]	C	A	2.205e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	5045284	X_5045284_SNP [dm3] X_5151251_SNP [dm6]	C	A	2.206e^-4	1	INTRON rg & 1 other
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	2.209e^-4	1	INTRON Sh
3L	13466650	3L_13466650_SNP [dm3] 3L_13473550_SNP [dm6]	G	T	2.211e^-4	1	INTRON CG10089
2L	12692575	2L_12692575_SNP [dm3] 2L_12692575_SNP [dm6]	A	T	2.219e^-4	1	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	26181654	3R_26181654_SNP [dm3] 3R_30355932_SNP [dm6]	A	C	2.222e^-4	1	INTRON hdc
2R	18033646	2R_18033646_SNP [dm3] 2R_22146141_SNP [dm6]	C	T	2.223e^-4	1	INTRON a
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	2.225e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17979845	2R_17979845_SNP [dm3] 2R_22092340_SNP [dm6]	A	T	2.228e^-4	1	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7499256	2L_7499256_SNP [dm3] 2L_7499256_SNP [dm6]	G	A	2.228e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad
2R	3508190	2R_3508190_SNP [dm3] 2R_7620685_SNP [dm6]	A	G	2.229e^-4	1	UTR_5_PRIME CG1358	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
2R	21085351	2R_21085351_SNP [dm3] 2R_25197828_SNP [dm6]	G	A	2.231e^-4	1	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20300764	3R_20300764_SNP [dm3] 3R_24475042_SNP [dm6]	G	A	2.233e^-4	1	INTERGENIC
2L	8970138	2L_8970138_SNP [dm3] 2L_8970138_SNP [dm6]	A	T	2.234e^-4	1	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
3L	1583967	3L_1583967_SNP [dm3] 3L_1583967_SNP [dm6]	C	T	2.236e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
3L	19277155	3L_19277155_SNP [dm3] 3L_19284055_SNP [dm6]	T	A	2.241e^-4	1	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	2.252e^-4	1	DOWNSTREAM CG9173 INTRON Ptp61F
3R	25003935	3R_25003935_SNP [dm3] 3R_29178213_SNP [dm6]	A	T	2.257e^-4	1	INTRON CG14509
X	11302442	X_11302442_SNP [dm3] X_11408409_SNP [dm6]	C	G	2.258e^-4	1	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
2R	15272571	2R_15272571_INS [dm3] 2R_19385066_INS [dm6]	T	TTA	2.260e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	2.266e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2264542	3L_2264542_SNP [dm3] 3L_2264542_SNP [dm6]	A	G	2.269e^-4	1	SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12155222	2L_12155222_SNP [dm3] 2L_12155222_SNP [dm6]	G	A	2.282e^-4	1	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	2.287e^-4	1	INTERGENIC
2R	7417761	2R_7417761_SNP [dm3] 2R_11530256_SNP [dm6]	T	A	2.297e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	10873784	2R_10873784_SNP [dm3] 2R_14986279_SNP [dm6]	G	A	2.307e^-4	1	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9033206	2R_9033206_SNP [dm3] 2R_13145701_SNP [dm6]	C	A	2.310e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	2.334e^-4	1	INTRON Sema-2b
X	8192336	X_8192336_SNP [dm3] X_8298303_SNP [dm6]	A	C	2.343e^-4	1	INTRON nAChRalpha3
2L	1885844	2L_1885844_SNP [dm3] 2L_1885844_SNP [dm6]	C	T	2.347e^-4	1	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22103934	3R_22103934_INS [dm3] 3R_26278212_INS [dm6]	A	ATAAAG	2.348e^-4	1	INTERGENIC
2L	16116594	2L_16116594_SNP [dm3] 2L_16116594_SNP [dm6]	G	T	2.350e^-4	1	INTERGENIC
2L	10058810	2L_10058810_SNP [dm3] 2L_10058810_SNP [dm6]	G	T	2.352e^-4	1	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	2.354e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	2.361e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3478860	2L_3478860_SNP [dm3] 2L_3478860_SNP [dm6]	G	A	2.373e^-4	1	INTRON Thor	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
X	6078452	X_6078452_SNP [dm3] X_6184419_SNP [dm6]	G	A	2.374e^-4	1	INTRON Ca-alpha1T
3R	23178850	3R_23178850_SNP [dm3] 3R_27353128_SNP [dm6]	T	G	2.381e^-4	1	INTRON CG42534
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	2.381e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3L	1794241	3L_1794241_INS [dm3] 3L_1794241_INS [dm6]	C	CC	2.386e^-4	1	INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	3084823	2L_3084823_SNP [dm3] 2L_3084823_SNP [dm6]	C	G	2.390e^-4	1	INTRON toc
X	10014496	X_10014496_SNP [dm3] X_10120463_SNP [dm6]	C	A	2.392e^-4	1	INTRON RhoU & 1 other
3L	24031022	3L_24031022_SNP [dm3] 3L_24037922_SNP [dm6]	C	G	2.396e^-4	1	INTERGENIC
3L	1328007	3L_1328007_SNP [dm3] 3L_1328007_SNP [dm6]	C	T	2.398e^-4	1	SYNONYMOUS_CODING Myo61F	TF binding site mE1_TFBS_chinmo
2R	7414162	2R_7414162_SNP [dm3] 2R_11526657_SNP [dm6]	A	G	2.406e^-4	1	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14033185	3R_14033185_SNP [dm3] 3R_18207463_SNP [dm6]	G	T	2.408e^-4	1	INTRON CG7985
2L	18113290	2L_18113290_SNP [dm3] 2L_18113290_SNP [dm6]	C	T	2.415e^-4	1	UPSTREAM CG44476 INTERGENIC
2L	18113291	2L_18113291_SNP [dm3] 2L_18113291_SNP [dm6]	A	T	2.415e^-4	1	UPSTREAM CG44476 INTERGENIC
3R	22901013	3R_22901013_SNP [dm3] 3R_27075291_SNP [dm6]	T	A	2.423e^-4	1	UPSTREAM CG14257 INTERGENIC
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	2.426e^-4	1	INTRON alph
3L	13915774	3L_13915774_SNP [dm3] 3L_13922674_SNP [dm6]	T	C	2.430e^-4	1	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	20517412	3R_20517412_SNP [dm3] 3R_24691690_SNP [dm6]	T	A	2.434e^-4	1	INTRON slo
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	2.434e^-4	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15166754	3R_15166754_SNP [dm3] 3R_19341032_SNP [dm6]	C	T	2.438e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12906573	X_12906573_SNP [dm3] X_13012540_SNP [dm6]	T	A	2.445e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	2.451e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15856765	2R_15856765_SNP [dm3] 2R_19969260_SNP [dm6]	C	T	2.464e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	2.466e^-4	1	INTERGENIC
2R	6177727	2R_6177727_SNP [dm3] 2R_10290222_SNP [dm6]	T	A	2.470e^-4	1	UPSTREAM CAP INTRON CAP
3L	9376179	3L_9376179_SNP [dm3] 3L_9383079_SNP [dm6]	C	A	2.471e^-4	1	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	888340	2L_888340_SNP [dm3] 2L_888340_SNP [dm6]	C	T	2.489e^-4	1	INTERGENIC
2R	8922111	2R_8922111_SNP [dm3] 2R_13034606_SNP [dm6]	C	G	2.494e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1796516	3L_1796516_SNP [dm3] 3L_1796516_SNP [dm6]	C	T	2.511e^-4	1	SYNONYMOUS_CODING Cdc37 UPSTREAM CG12020	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	14969788	3R_14969788_DEL [dm3] 3R_19144066_DEL [dm6]	GAACG	G	2.517e^-4	1	INTRON Ppcs
3R	16890133	3R_16890133_SNP [dm3] 3R_21064411_SNP [dm6]	C	T	2.526e^-4	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19330984	2L_19330984_SNP [dm3] 2L_19330984_SNP [dm6]	T	G	2.533e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10738673	X_10738673_SNP [dm3] X_10844640_SNP [dm6]	C	T	2.533e^-4	1	NON_SYNONYMOUS_CODING CG32669 INTRON sbr	TF binding site mE1_TFBS_sens
3L	4308474	3L_4308474_SNP [dm3] 3L_4308474_SNP [dm6]	G	A	2.539e^-4	1	UPSTREAM dyl INTERGENIC
X	5737213	X_5737213_SNP [dm3] X_5843180_SNP [dm6]	G	A	2.546e^-4	1	INTERGENIC
3R	19327471	3R_19327471_SNP [dm3] 3R_23501749_SNP [dm6]	G	T	2.561e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	2.564e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	8767452	2L_8767452_SNP [dm3] 2L_8767452_SNP [dm6]	G	A	2.565e^-4	1	SYNONYMOUS_CODING CG9463
3R	20517370	3R_20517370_DEL [dm3] 3R_24691648_DEL [dm6]	TATAACATAACA...	T	2.567e^-4	1	INTRON slo
3L	1706520	3L_1706520_SNP [dm3] 3L_1706520_SNP [dm6]	G	C	2.579e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8922240	2R_8922240_SNP [dm3] 2R_13034735_SNP [dm6]	A	G	2.581e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	9199189	3L_9199189_SNP [dm3] 3L_9206089_SNP [dm6]	A	T	2.584e^-4	1	INTRON Slc45-1
2R	8922177	2R_8922177_SNP [dm3] 2R_13034672_SNP [dm6]	G	C	2.585e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	24020609	3L_24020609_SNP [dm3] 3L_24027509_SNP [dm6]	A	C	2.586e^-4	1	INTERGENIC
2R	4199856	2R_4199856_DEL [dm3] 2R_8312351_DEL [dm6]	AATA	A	2.594e^-4	1	DOWNSTREAM CR44450 INTERGENIC
3R	21689233	3R_21689233_DEL [dm3] 3R_25863511_DEL [dm6]	CATAC	T	2.597e^-4	1	INTRON CG5890
3R	24444938	3R_24444938_SNP [dm3] 3R_28619216_SNP [dm6]	C	T	2.601e^-4	1	INTRON CG10011
2L	4456612	2L_4456612_SNP [dm3] 2L_4456612_SNP [dm6]	T	A	2.606e^-4	1	DOWNSTREAM RpL27A & 1 other INTRON Gs1l	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	4199862	2R_4199862_DEL [dm3] 2R_8312357_DEL [dm6]	TCTCA	T	2.609e^-4	1	DOWNSTREAM CR44450 INTERGENIC
3R	18978579	3R_18978579_SNP [dm3] 3R_23152857_SNP [dm6]	C	T	2.610e^-4	1	UTR_3_PRIME unk DOWNSTREAM unk
X	16324923	X_16324923_SNP [dm3] X_16430890_SNP [dm6]	T	C	2.615e^-4	1	INTRON hang	TF binding site mE1_TFBS_cad
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	2.619e^-4	1	UPSTREAM para INTERGENIC
3R	26272236	3R_26272236_SNP [dm3] 3R_30446514_SNP [dm6]	G	T	2.631e^-4	1	INTRON aralar1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	2.632e^-4	1	INTRON trol
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	2.648e^-4	1	INTRON dnt	TF binding site mE1_TFBS_cad
2L	10058791	2L_10058791_SNP [dm3] 2L_10058791_SNP [dm6]	A	T	2.649e^-4	1	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4307576	3L_4307576_SNP [dm3] 3L_4307576_SNP [dm6]	T	C	2.651e^-4	1	UTR_5_PRIME dyl
2L	1965096	2L_1965096_SNP [dm3] 2L_1965096_SNP [dm6]	C	T	2.651e^-4	1	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9224868	3L_9224868_SNP [dm3] 3L_9231768_SNP [dm6]	G	A	2.658e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16077002	2R_16077002_SNP [dm3] 2R_20189497_SNP [dm6]	A	G	2.676e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	9509075	3L_9509075_SNP [dm3] 3L_9515975_SNP [dm6]	A	T	2.686e^-4	1	INTRON CG33700
3L	23934155	3L_23934155_SNP [dm3] 3L_23941055_SNP [dm6]	G	T	2.691e^-4	1	INTRON CG40470
X	17410817	X_17410817_SNP [dm3] X_17516784_SNP [dm6]	G	A	2.713e^-4	1	INTRON CG43658
3R	22530086	3R_22530086_SNP [dm3] 3R_26704364_SNP [dm6]	T	C	2.718e^-4	1	INTRON amon
2L	7536822	2L_7536822_SNP [dm3] 2L_7536822_SNP [dm6]	G	T	2.730e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3896154	2R_3896154_SNP [dm3] 2R_8008649_SNP [dm6]	T	G	2.734e^-4	1	DOWNSTREAM CG14762 INTRON Odc2	TF binding site mE1_TFBS_cad
2R	17771824	2R_17771824_SNP [dm3] 2R_21884319_SNP [dm6]	A	G	2.737e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7375228	2R_7375228_SNP [dm3] 2R_11487723_SNP [dm6]	T	C	2.742e^-4	1	INTRON inv
X	12597599	X_12597599_SNP [dm3] X_12703566_SNP [dm6]	A	G	2.744e^-4	1	INTRON Smr	TF binding site mE1_TFBS_HSA
3L	11317034	3L_11317034_SNP [dm3] 3L_11323934_SNP [dm6]	C	T	2.751e^-4	1	UPSTREAM CR44721 DOWNSTREAM CR44723 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	2.752e^-4	1	INTRON CG13917
X	16426985	X_16426985_SNP [dm3] X_16532952_SNP [dm6]	C	T	2.757e^-4	1	INTRON para
3L	14158996	3L_14158996_SNP [dm3] 3L_14165896_SNP [dm6]	A	T	2.761e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13016785	2R_13016785_SNP [dm3] 2R_17129280_SNP [dm6]	C	T	2.768e^-4	1	SYNONYMOUS_CODING Cda9
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	2.775e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	5394522	X_5394522_SNP [dm3] X_5500489_SNP [dm6]	T	G	2.781e^-4	1	SYNONYMOUS_CODING CG32762 UPSTREAM CG4151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	7125347	2R_7125347_SNP [dm3] 2R_11237842_SNP [dm6]	G	A	2.782e^-4	1	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6782442	2L_6782442_SNP [dm3] 2L_6782442_SNP [dm6]	A	G	2.786e^-4	1	INTRON nrv1
2L	6980238	2L_6980238_SNP [dm3] 2L_6980238_SNP [dm6]	C	A	2.787e^-4	1	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4524405	3L_4524405_SNP [dm3] 3L_4524405_SNP [dm6]	A	C	2.796e^-4	1	NON_SYNONYMOUS_CODING Tie	TF binding site mE1_TFBS_cad
X	12845212	X_12845212_SNP [dm3] X_12951179_SNP [dm6]	T	C	2.808e^-4	1	UTR_3_PRIME hec DOWNSTREAM fne
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	2.810e^-4	1	UPSTREAM para INTERGENIC
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	2.811e^-4	1	INTERGENIC
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	2.812e^-4	1	INTERGENIC
3R	14829064	3R_14829064_SNP [dm3] 3R_19003342_SNP [dm6]	T	C	2.813e^-4	1	INTRON gukh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2956506	3L_2956506_SNP [dm3] 3L_2956506_SNP [dm6]	G	C	2.832e^-4	1	INTRON Shab	TF binding site mE1_TFBS_chinmo
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	2.834e^-4	1	INTRON Pkc53E
3R	26805042	3R_26805042_SNP [dm3] 3R_30979320_SNP [dm6]	G	T	2.835e^-4	1	INTRON 5-HT7
3R	19048246	3R_19048246_SNP [dm3] 3R_23222524_SNP [dm6]	A	C	2.838e^-4	1	UPSTREAM cnc INTRON cnc
X	2755733	X_2755733_INS [dm3] X_2861700_INS [dm6]	T	TGGGTGATGCGGCTGCCGAG...	2.838e^-4	1	INTRON kirre
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	2.841e^-4	1	INTRON CG13579
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	2.842e^-4	1	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22091445	3R_22091445_SNP [dm3] 3R_26265723_SNP [dm6]	C	A	2.844e^-4	1	INTRON CG6154
X	2998646	X_2998646_SNP [dm3] X_3104613_SNP [dm6]	C	T	2.844e^-4	1	INTRON kirre
3R	15166245	3R_15166245_SNP [dm3] 3R_19340523_SNP [dm6]	T	A	2.845e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	5890114	2L_5890114_SNP [dm3] 2L_5890114_SNP [dm6]	C	T	2.846e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4413400	2L_4413400_SNP [dm3] 2L_4413400_SNP [dm6]	A	T	2.846e^-4	1	INTRON CG15431
3R	22286552	3R_22286552_SNP [dm3] 3R_26460830_SNP [dm6]	G	C	2.851e^-4	1	UTR_3_PRIME CG14238 UPSTREAM CG5455	TF binding site mE1_TFBS_Trl
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	2.855e^-4	1	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16720426	3L_16720426_SNP [dm3] 3L_16727326_SNP [dm6]	A	C	2.864e^-4	1	UTR_3_PRIME PGRP-SB1 DOWNSTREAM PGRP-SB2	TF binding site mE1_TFBS_cad
3R	25953710	3R_25953710_SNP [dm3] 3R_30127988_SNP [dm6]	A	G	2.873e^-4	1	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
X	20563794	X_20563794_SNP [dm3] X_20692767_SNP [dm6]	A	G	2.873e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	2.873e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25437387	3R_25437387_SNP [dm3] 3R_29611665_SNP [dm6]	A	T	2.878e^-4	1	INTRON alph
3R	14233838	3R_14233838_SNP [dm3] 3R_18408116_SNP [dm6]	A	C	2.879e^-4	1	SYNONYMOUS_CODING CG31122
3L	19008169	3L_19008169_SNP [dm3] 3L_19015069_SNP [dm6]	C	T	2.880e^-4	1	INTRON nkd
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	2.885e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23762370	3L_23762370_SNP [dm3] 3L_23769270_SNP [dm6]	A	C	2.906e^-4	1	INTERGENIC	transposable element FlyBase
2L	10910966	2L_10910966_DEL [dm3] 2L_10910966_DEL [dm6]	TTAGC	T	2.919e^-4	1	UPSTREAM CG14069 INTERGENIC
3L	19023624	3L_19023624_SNP [dm3] 3L_19030524_SNP [dm6]	G	A	2.921e^-4	1	INTRON nkd
2R	18032745	2R_18032745_SNP [dm3] 2R_22145240_SNP [dm6]	T	C	2.929e^-4	1	INTRON a
3L	24020658	3L_24020658_SNP [dm3] 3L_24027558_SNP [dm6]	C	A	2.930e^-4	1	UPSTREAM CG40045 INTERGENIC
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	2.939e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	2.941e^-4	1	INTRON CG14521
2R	9453385	2R_9453385_SNP [dm3] 2R_13565880_SNP [dm6]	A	C	2.957e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	6940947	3L_6940947_SNP [dm3] 3L_6947847_SNP [dm6]	C	A	2.962e^-4	1	SYNONYMOUS_CODING tow
3L	16716279	3L_16716279_SNP [dm3] 3L_16723179_SNP [dm6]	A	T	2.965e^-4	1	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad
2R	16329167	2R_16329167_SNP [dm3] 2R_20441662_SNP [dm6]	G	C	2.966e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	8275054	2L_8275054_SNP [dm3] 2L_8275054_SNP [dm6]	T	A	2.968e^-4	1	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	20006040	X_20006040_SNP [dm3] X_20112007_SNP [dm6]	T	C	2.969e^-4	1	INTERGENIC
2L	18151861	2L_18151861_SNP [dm3] 2L_18151861_SNP [dm6]	A	G	2.992e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
2R	17896538	2R_17896538_SNP [dm3] 2R_22009033_SNP [dm6]	A	G	2.998e^-4	1	INTRON CG34370
3L	13466755	3L_13466755_SNP [dm3] 3L_13473655_SNP [dm6]	T	C	3.004e^-4	1	INTRON CG10089
3L	11798043	3L_11798043_SNP [dm3] 3L_11804943_SNP [dm6]	A	G	3.005e^-4	1	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	3.011e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	15622397	3R_15622397_SNP [dm3] 3R_19796675_SNP [dm6]	G	T	3.034e^-4	1	SYNONYMOUS_CODING bnl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_h mE1_TFBS_HSA
2L	19915893	2L_19915893_INS [dm3] 2L_19915893_INS [dm6]	T	TCTTAACATTTTTGCATTT...	3.050e^-4	1	INTRON sick	TF binding site mE1_TFBS_bab1
2R	8760304	2R_8760304_SNP [dm3] 2R_12872799_SNP [dm6]	T	A	3.059e^-4	1	UTR_3_PRIME CG3790 EXON CR43469	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	3.060e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	3.066e^-4	1	INTERGENIC
3L	13040854	3L_13040854_SNP [dm3] 3L_13047754_SNP [dm6]	T	A	3.068e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13040856	3L_13040856_SNP [dm3] 3L_13047756_SNP [dm6]	G	T	3.068e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26005517	3R_26005517_SNP [dm3] 3R_30179795_SNP [dm6]	G	A	3.074e^-4	1	UTR_3_PRIME CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15370895	2L_15370895_SNP [dm3] 2L_15370895_SNP [dm6]	T	G	3.075e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19025231	3L_19025231_SNP [dm3] 3L_19032131_SNP [dm6]	A	G	3.078e^-4	1	INTRON nkd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	23882029	3R_23882029_DEL [dm3] 3R_28056307_DEL [dm6]	TA	T	3.083e^-4	1	INTRON CG34362
2R	16248813	2R_16248813_INS [dm3] 2R_20361308_INS [dm6]	C	CC	3.086e^-4	1	INTERGENIC
3L	9510912	3L_9510912_SNP [dm3] 3L_9517812_SNP [dm6]	T	A	3.089e^-4	1	INTRON CG33700
2R	19112357	2R_19112357_SNP [dm3] 2R_23224834_SNP [dm6]	T	C	3.109e^-4	1	INTERGENIC
X	17383065	X_17383065_SNP [dm3] X_17489032_SNP [dm6]	A	C	3.112e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
3L	1585197	3L_1585197_SNP [dm3] 3L_1585197_SNP [dm6]	T	G	3.121e^-4	1	INTRON CG13917
X	6078339	X_6078339_SNP [dm3] X_6184306_SNP [dm6]	C	T	3.131e^-4	1	INTRON Ca-alpha1T
2L	4199966	2L_4199966_SNP [dm3] 2L_4199966_SNP [dm6]	C	G	3.133e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9169774	2R_9169774_SNP [dm3] 2R_13282269_SNP [dm6]	T	C	3.141e^-4	1	INTRON Dh31-R
2R	15895623	2R_15895623_SNP [dm3] 2R_20008118_SNP [dm6]	C	A	3.153e^-4	1	DOWNSTREAM CR44628 INTERGENIC
2R	15895632	2R_15895632_SNP [dm3] 2R_20008127_SNP [dm6]	T	G	3.153e^-4	1	DOWNSTREAM CR44628 INTERGENIC
2R	6177653	2R_6177653_SNP [dm3] 2R_10290148_SNP [dm6]	T	A	3.161e^-4	1	UPSTREAM CAP INTRON CAP
2L	8226548	2L_8226548_SNP [dm3] 2L_8226548_SNP [dm6]	G	A	3.172e^-4	1	SYNONYMOUS_CODING Pvr
2L	4413397	2L_4413397_SNP [dm3] 2L_4413397_SNP [dm6]	A	G	3.181e^-4	1	INTRON CG15431
2R	18123839	2R_18123839_SNP [dm3] 2R_22236334_SNP [dm6]	T	A	3.191e^-4	1	EXON CR44755
2R	6177652	2R_6177652_SNP [dm3] 2R_10290147_SNP [dm6]	T	A	3.191e^-4	1	UPSTREAM CAP INTRON CAP
2R	17145100	2R_17145100_SNP [dm3] 2R_21257595_SNP [dm6]	A	C	3.191e^-4	1	UTR_5_PRIME Rgk3 INTRON Rgk3
3L	5589384	3L_5589384_SNP [dm3] 3L_5596284_SNP [dm6]	C	T	3.193e^-4	1	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	12844944	X_12844944_SNP [dm3] X_12950911_SNP [dm6]	A	G	3.193e^-4	1	UTR_3_PRIME hec DOWNSTREAM hec & 1 other
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	3.195e^-4	1	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23232145	3L_23232145_SNP [dm3] 3L_23239045_SNP [dm6]	G	C	3.219e^-4	1	INTRON nAChRalpha4
2R	14839090	2R_14839090_SNP [dm3] 2R_18951585_SNP [dm6]	C	G	3.229e^-4	1	INTRON sano
2R	16191243	2R_16191243_SNP [dm3] 2R_20303738_SNP [dm6]	A	G	3.237e^-4	1	DOWNSTREAM CR44640 & 2 others INTERGENIC
2R	8922194	2R_8922194_SNP [dm3] 2R_13034689_SNP [dm6]	G	T	3.237e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2779891	X_2779891_SNP [dm3] X_2885858_SNP [dm6]	A	G	3.238e^-4	1	NON_SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13465398	3L_13465398_SNP [dm3] 3L_13472298_SNP [dm6]	A	G	3.246e^-4	1	INTRON CG10089
X	11018016	X_11018016_SNP [dm3] X_11123983_SNP [dm6]	T	C	3.261e^-4	1	START_GAINED CG11122 UTR_5_PRIME CG11122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	3.265e^-4	1	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	3.276e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1889566	2L_1889566_SNP [dm3] 2L_1889566_SNP [dm6]	G	A	3.285e^-4	1	INTRON CG7337
3R	20488310	3R_20488310_SNP [dm3] 3R_24662588_SNP [dm6]	G	A	3.287e^-4	1	UPSTREAM Ppox INTRON slo	regulatory region REDfly_CRMs
X	20006135	X_20006135_SNP [dm3] X_20112102_SNP [dm6]	C	T	3.290e^-4	1	INTERGENIC
3L	19277239	3L_19277239_SNP [dm3] 3L_19284139_SNP [dm6]	G	A	3.291e^-4	1	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2L	5890479	2L_5890479_SNP [dm3] 2L_5890479_SNP [dm6]	A	T	3.292e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6581670	2L_6581670_SNP [dm3] 2L_6581670_SNP [dm6]	T	A	3.295e^-4	1	INTRON CG11319
2R	6760048	2R_6760048_SNP [dm3] 2R_10872543_SNP [dm6]	A	G	3.297e^-4	1	INTRON CG30015
2L	5870652	2L_5870652_SNP [dm3] 2L_5870652_SNP [dm6]	T	C	3.304e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17795153	2R_17795153_SNP [dm3] 2R_21907648_SNP [dm6]	T	C	3.307e^-4	1	INTRON Fili
3R	14510803	3R_14510803_SNP [dm3] 3R_18685081_SNP [dm6]	T	A	3.311e^-4	1	UTR_3_PRIME CG7708
2L	7174442	2L_7174442_SNP [dm3] 2L_7174442_SNP [dm6]	T	G	3.315e^-4	1	EXON CR44610
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	3.323e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	3.336e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	18801151	3R_18801151_SNP [dm3] 3R_22975429_SNP [dm6]	G	A	3.336e^-4	1	INTERGENIC
2L	4457012	2L_4457012_SNP [dm3] 2L_4457012_SNP [dm6]	A	T	3.345e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	21006680	3R_21006680_SNP [dm3] 3R_25180958_SNP [dm6]	G	A	3.352e^-4	1	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	3.355e^-4	1	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	3.358e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	3.358e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	7413297	2R_7413297_SNP [dm3] 2R_11525792_SNP [dm6]	T	A	3.375e^-4	1	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	13866447	2R_13866447_SNP [dm3] 2R_17978942_SNP [dm6]	G	C	3.376e^-4	1	INTRON dpr13
3L	1588205	3L_1588205_SNP [dm3] 3L_1588205_SNP [dm6]	T	C	3.376e^-4	1	INTRON CG13917
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	3.389e^-4	1	INTERGENIC
2R	15734934	2R_15734934_SNP [dm3] 2R_19847429_SNP [dm6]	T	G	3.410e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10010184	2L_10010184_SNP [dm3] 2L_10010184_SNP [dm6]	T	A	3.426e^-4	1	UPSTREAM Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	18841347	3L_18841347_SNP [dm3] 3L_18848247_SNP [dm6]	G	T	3.442e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14183426	2R_14183426_SNP [dm3] 2R_18295921_SNP [dm6]	C	A	3.445e^-4	1	UPSTREAM CG18537 DOWNSTREAM CG18536 INTRON sbb
2L	6458684	2L_6458684_SNP [dm3] 2L_6458684_SNP [dm6]	T	A	3.446e^-4	1	UTR_3_PRIME frj DOWNSTREAM CG16947
3L	18841331	3L_18841331_SNP [dm3] 3L_18848231_SNP [dm6]	T	G	3.446e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	11952664	2R_11952664_SNP [dm3] 2R_16065159_SNP [dm6]	T	C	3.452e^-4	1	DOWNSTREAM mir-137 INTERGENIC
2L	19363646	2L_19363646_SNP [dm3] 2L_19363646_SNP [dm6]	C	A	3.455e^-4	1	UPSTREAM dnt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15272563	2R_15272563_SNP [dm3] 2R_19385058_SNP [dm6]	T	A	3.475e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
X	2100514	X_2100514_SNP [dm3] X_2206481_SNP [dm6]	T	C	3.477e^-4	1	INTRON msta
X	14030579	X_14030579_SNP [dm3] X_14136546_SNP [dm6]	T	G	3.483e^-4	1	INTERGENIC
X	12906612	X_12906612_SNP [dm3] X_13012579_SNP [dm6]	C	T	3.492e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20006063	X_20006063_SNP [dm3] X_20112030_SNP [dm6]	G	A	3.498e^-4	1	INTERGENIC
2L	12694251	2L_12694251_SNP [dm3] 2L_12694251_SNP [dm6]	A	T	3.501e^-4	1	UPSTREAM PICK1 DOWNSTREAM CG6153 INTRON CG5780
3R	18347069	3R_18347069_SNP [dm3] 3R_22521347_SNP [dm6]	G	A	3.506e^-4	1	SYNONYMOUS_CODING CG5346	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9509069	3L_9509069_SNP [dm3] 3L_9515969_SNP [dm6]	A	C	3.512e^-4	1	INTRON CG33700
2R	6588378	2R_6588378_SNP [dm3] 2R_10700873_SNP [dm6]	T	C	3.539e^-4	1	INTRON stan
3R	23867962	3R_23867962_SNP [dm3] 3R_28042240_SNP [dm6]	G	A	3.542e^-4	1	INTRON CG34362
3R	26010069	3R_26010069_SNP [dm3] 3R_30184347_SNP [dm6]	T	C	3.543e^-4	1	EXON CR44262
2L	11381949	2L_11381949_SNP [dm3] 2L_11381949_SNP [dm6]	G	A	3.544e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	3.549e^-4	1	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	11345404	3L_11345404_SNP [dm3] 3L_11352304_SNP [dm6]	C	G	3.549e^-4	1	INTERGENIC
2L	16578277	2L_16578277_SNP [dm3] 2L_16578277_SNP [dm6]	T	C	3.552e^-4	1	INTRON CG42389
2L	18132765	2L_18132765_SNP [dm3] 2L_18132765_SNP [dm6]	T	C	3.552e^-4	1	INTRON kel
2R	8760487	2R_8760487_SNP [dm3] 2R_12872982_SNP [dm6]	G	T	3.571e^-4	1	NON_SYNONYMOUS_CODING CG3790 EXON CR43469	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	3.571e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	25993297	3R_25993297_SNP [dm3] 3R_30167575_SNP [dm6]	G	T	3.572e^-4	1	SYNONYMOUS_CODING CG31028
X	15178521	X_15178521_DEL [dm3] X_15284488_DEL [dm6]	TT	T	3.582e^-4	1	INTERGENIC
3R	16890210	3R_16890210_SNP [dm3] 3R_21064488_SNP [dm6]	G	A	3.584e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	20564174	X_20564174_SNP [dm3] X_20693147_SNP [dm6]	A	G	3.590e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	19502752	2R_19502752_SNP [dm3] 2R_23615229_SNP [dm6]	T	A	3.596e^-4	1	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	3.598e^-4	1	INTRON cpo
X	12597600	X_12597600_SNP [dm3] X_12703567_SNP [dm6]	T	C	3.603e^-4	1	INTRON Smr	TF binding site mE1_TFBS_HSA
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	3.607e^-4	1	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3L	24030096	3L_24030096_DEL [dm3] 3L_24036996_DEL [dm6]	GATCG	G	3.613e^-4	1	INTERGENIC
3R	21805285	3R_21805285_SNP [dm3] 3R_25979563_SNP [dm6]	G	T	3.617e^-4	1	SYNONYMOUS_CODING CG42261	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20839931	3R_20839931_SNP [dm3] 3R_25014209_SNP [dm6]	G	T	3.618e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	3.621e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2704947	2L_2704947_SNP [dm3] 2L_2704947_SNP [dm6]	C	G	3.624e^-4	1	NON_SYNONYMOUS_CODING CG31690	TF binding site BDTNP1_TFBS_twi
2R	3319015	2R_3319015_SNP [dm3] 2R_7431510_SNP [dm6]	T	G	3.644e^-4	1	DOWNSTREAM CR44204 INTRON so	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	3.656e^-4	1	INTERGENIC
3R	16033923	3R_16033923_SNP [dm3] 3R_20208201_SNP [dm6]	A	G	3.657e^-4	1	UTR_3_PRIME CG17199 INTRON Nlg4
3L	1586302	3L_1586302_DEL [dm3] 3L_1586302_DEL [dm6]	CTTTCTTG	AA	3.657e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	13054836	2L_13054836_SNP [dm3] 2L_13054836_SNP [dm6]	G	A	3.659e^-4	1	INTRON CG9932
3L	7144388	3L_7144388_SNP [dm3] 3L_7151288_SNP [dm6]	T	A	3.659e^-4	1	INTRON corn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19288817	3L_19288817_SNP [dm3] 3L_19295717_SNP [dm6]	C	T	3.663e^-4	1	INTRON fal	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20683901	3R_20683901_DEL [dm3] 3R_24858179_DEL [dm6]	CGT	G	3.670e^-4	1	UPSTREAM CG10899 INTRON ppk22
2R	3319806	2R_3319806_SNP [dm3] 2R_7432301_SNP [dm6]	A	T	3.672e^-4	1	INTRON so EXON CR44204	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8760056	2R_8760056_SNP [dm3] 2R_12872551_SNP [dm6]	G	A	3.676e^-4	1	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5620944	3R_5620944_SNP [dm3] 3R_9795222_SNP [dm6]	A	G	3.687e^-4	1	SYNONYMOUS_CODING CG8516	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8192344	X_8192344_SNP [dm3] X_8298311_SNP [dm6]	G	A	3.691e^-4	1	INTRON nAChRalpha3
3L	3123864	3L_3123864_SNP [dm3] 3L_3123864_SNP [dm6]	C	G	3.698e^-4	1	UPSTREAM prominin-like INTRON prominin-like
X	12906562	X_12906562_SNP [dm3] X_13012529_SNP [dm6]	G	C	3.698e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14588049	X_14588049_SNP [dm3] X_14694016_SNP [dm6]	T	C	3.709e^-4	1	INTRON NetB
X	16428055	X_16428055_SNP [dm3] X_16534022_SNP [dm6]	C	T	3.715e^-4	1	UPSTREAM para INTERGENIC
3R	12481533	3R_12481533_SNP [dm3] 3R_16655811_SNP [dm6]	C	T	3.720e^-4	1	UPSTREAM modSP DOWNSTREAM Ubx INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1 transposable element FlyBase
3R	12092499	3R_12092499_SNP [dm3] 3R_16266777_SNP [dm6]	A	C	3.728e^-4	1	UTR_3_PRIME asun UPSTREAM Mst89B
2L	11535453	2L_11535453_DEL [dm3] 2L_11535453_DEL [dm6]	TT	T	3.728e^-4	1	UPSTREAM CR42743 & 1 other INTERGENIC
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	3.729e^-4	1	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
3R	20306521	3R_20306521_SNP [dm3] 3R_24480799_SNP [dm6]	C	T	3.742e^-4	1	INTERGENIC
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	3.744e^-4	1	INTERGENIC
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	3.748e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	24502653	3L_24502653_SNP [dm3] 3L_24509553_SNP [dm6]	T	C	3.758e^-4	1	INTERGENIC
3R	15171038	3R_15171038_SNP [dm3] 3R_19345316_SNP [dm6]	T	C	3.792e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	3.799e^-4	1	INTERGENIC
3R	14592685	3R_14592685_SNP [dm3] 3R_18766963_SNP [dm6]	T	C	3.811e^-4	1	INTRON CG7720
3R	24707236	3R_24707236_SNP [dm3] 3R_28881514_SNP [dm6]	A	G	3.812e^-4	1	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
3L	15227390	3L_15227390_SNP [dm3] 3L_15234290_SNP [dm6]	C	T	3.815e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	16559721	X_16559721_SNP [dm3] X_16665688_SNP [dm6]	G	A	3.825e^-4	1	INTRON r
3R	24960104	3R_24960104_SNP [dm3] 3R_29134382_SNP [dm6]	C	T	3.828e^-4	1	INTRON Vha100-1
3R	19356833	3R_19356833_SNP [dm3] 3R_23531111_SNP [dm6]	T	G	3.831e^-4	1	UPSTREAM CG10175 INTERGENIC
2R	7375425	2R_7375425_SNP [dm3] 2R_11487920_SNP [dm6]	G	T	3.850e^-4	1	INTRON inv
3L	9376190	3L_9376190_SNP [dm3] 3L_9383090_SNP [dm6]	A	T	3.859e^-4	1	UPSTREAM Hsp27 DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18154654	3L_18154654_SNP [dm3] 3L_18161554_SNP [dm6]	C	T	3.866e^-4	1	INTRON CG13699
2R	9791729	2R_9791729_DEL [dm3] 2R_13904224_DEL [dm6]	CAT	C	3.868e^-4	1	INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10577761	2L_10577761_SNP [dm3] 2L_10577761_SNP [dm6]	T	A	3.870e^-4	1	UTR_5_PRIME w-cup INTRON Trim9
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	3.881e^-4	1	INTRON bbg
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	3.885e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	9033267	2R_9033267_SNP [dm3] 2R_13145762_SNP [dm6]	A	G	3.886e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3L	10994091	3L_10994091_SNP [dm3] 3L_11000991_SNP [dm6]	A	C	3.889e^-4	1	DOWNSTREAM snoRNA:Me18S-G962 INTRON klu
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	3.890e^-4	1	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	3.893e^-4	1	INTRON a
2L	1094324	2L_1094324_SNP [dm3] 2L_1094324_SNP [dm6]	A	G	3.895e^-4	1	INTRON CG4629
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	3.912e^-4	1	INTRON dpr3
2L	2822075	2L_2822075_SNP [dm3] 2L_2822075_SNP [dm6]	T	A	3.919e^-4	1	INTRON Duox
X	6333686	X_6333686_SNP [dm3] X_6439653_SNP [dm6]	C	T	3.926e^-4	1	INTRON CG42340
2R	9013009	2R_9013009_SNP [dm3] 2R_13125504_SNP [dm6]	C	T	3.940e^-4	1	INTRON CG13325
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	3.949e^-4	1	UPSTREAM para INTERGENIC
2R	13505961	2R_13505961_SNP [dm3] 2R_17618456_SNP [dm6]	C	T	3.956e^-4	1	UPSTREAM CG44403 INTRON CG10936
3L	18252585	3L_18252585_SNP [dm3] 3L_18259485_SNP [dm6]	G	T	3.958e^-4	1	INTERGENIC
2R	9858288	2R_9858288_SNP [dm3] 2R_13970783_SNP [dm6]	T	A	3.961e^-4	1	NON_SYNONYMOUS_CODING St4 DOWNSTREAM Aats-phe & 1 other
3L	13951120	3L_13951120_SNP [dm3] 3L_13958020_SNP [dm6]	G	T	3.967e^-4	1	INTRON CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10577822	2L_10577822_SNP [dm3] 2L_10577822_SNP [dm6]	A	G	3.968e^-4	1	UPSTREAM w-cup INTRON Trim9
3L	18197253	3L_18197253_SNP [dm3] 3L_18204153_SNP [dm6]	C	G	3.969e^-4	1	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	7467804	3L_7467804_SNP [dm3] 3L_7474704_SNP [dm6]	C	A	3.973e^-4	1	UPSTREAM CG43292 INTERGENIC
3L	11759566	3L_11759566_INS [dm3] 3L_11766466_INS [dm6]	C	CA	3.982e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	11680182	3L_11680182_SNP [dm3] 3L_11687082_SNP [dm6]	G	A	3.982e^-4	1	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	3.986e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7174648	2L_7174648_INS [dm3] 2L_7174648_INS [dm6]	C	CGGCATC	3.987e^-4	1	EXON CR44610
X	9918443	X_9918443_SNP [dm3] X_10024410_SNP [dm6]	A	T	3.990e^-4	1	INTRON Cht6
2L	3172785	2L_3172785_SNP [dm3] 2L_3172785_SNP [dm6]	A	G	3.991e^-4	1	DOWNSTREAM tRNA:S7:23Ea & 1 other EXON CR44003	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_ttk
X	20006038	X_20006038_SNP [dm3] X_20112005_SNP [dm6]	C	T	3.999e^-4	1	INTERGENIC
2L	9961175	2L_9961175_SNP [dm3] 2L_9961175_SNP [dm6]	C	T	4.004e^-4	1	SYNONYMOUS_CODING CG5850 UTR_3_PRIME CG5850 UPSTREAM CR44872 EXON CR43683	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11759438	3L_11759438_SNP [dm3] 3L_11766338_SNP [dm6]	T	G	4.005e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	11759447	3L_11759447_SNP [dm3] 3L_11766347_SNP [dm6]	A	T	4.005e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2L	10066299	2L_10066299_SNP [dm3] 2L_10066299_SNP [dm6]	C	T	4.006e^-4	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	4.014e^-4	1	INTRON CG13579
2L	8967918	2L_8967918_SNP [dm3] 2L_8967918_SNP [dm6]	G	A	4.014e^-4	1	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	4.017e^-4	1	INTRON lilli
X	12622774	X_12622774_INS [dm3] X_12728741_INS [dm6]	T	TTGT	4.018e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	4.027e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19782286	X_19782286_SNP [dm3] X_19888253_SNP [dm6]	C	T	4.028e^-4	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	677269	3L_677269_SNP [dm3] 3L_677269_SNP [dm6]	G	T	4.032e^-4	1	DOWNSTREAM CG17129 INTERGENIC
3L	16084771	3L_16084771_SNP [dm3] 3L_16091671_SNP [dm6]	A	G	4.034e^-4	1	SYNONYMOUS_CODING ClC-c
3R	16890130	3R_16890130_SNP [dm3] 3R_21064408_SNP [dm6]	A	G	4.035e^-4	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	20005882	X_20005882_SNP [dm3] X_20111849_SNP [dm6]	T	A	4.044e^-4	1	INTERGENIC
X	16796468	X_16796468_SNP [dm3] X_16902435_SNP [dm6]	C	T	4.064e^-4	1	EXON CR44754
X	2998649	X_2998649_SNP [dm3] X_3104616_SNP [dm6]	A	G	4.066e^-4	1	INTRON kirre
X	6715393	X_6715393_SNP [dm3] X_6821360_SNP [dm6]	G	T	4.072e^-4	1	NON_SYNONYMOUS_CODING CG4542 UPSTREAM Nf-YC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6177656	2R_6177656_SNP [dm3] 2R_10290151_SNP [dm6]	C	A	4.075e^-4	1	UPSTREAM CAP INTRON CAP
2R	15914407	2R_15914407_SNP [dm3] 2R_20026902_SNP [dm6]	T	C	4.084e^-4	1	INTERGENIC
2L	8767419	2L_8767419_SNP [dm3] 2L_8767419_SNP [dm6]	A	G	4.092e^-4	1	SYNONYMOUS_CODING CG9463
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	4.096e^-4	1	INTERGENIC
3L	1794917	3L_1794917_SNP [dm3] 3L_1794917_SNP [dm6]	A	T	4.097e^-4	1	UPSTREAM Cdc37 INTRON alpha-Spec & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	8973433	2L_8973433_SNP [dm3] 2L_8973433_SNP [dm6]	T	C	4.097e^-4	1	SYNONYMOUS_CODING CG9541
2L	5876495	2L_5876495_SNP [dm3] 2L_5876495_SNP [dm6]	C	A	4.102e^-4	1	INTRON rau
2L	10073097	2L_10073097_SNP [dm3] 2L_10073097_SNP [dm6]	C	A	4.106e^-4	1	INTRON CG44153	TF binding site mE1_TFBS_inv
2L	10058797	2L_10058797_SNP [dm3] 2L_10058797_SNP [dm6]	A	T	4.108e^-4	1	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10261195	3L_10261195_SNP [dm3] 3L_10268095_SNP [dm6]	A	T	4.109e^-4	1	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2R	4004214	2R_4004214_SNP [dm3] 2R_8116709_SNP [dm6]	G	A	4.111e^-4	1	SYNONYMOUS_CODING Asap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10810658	3L_10810658_SNP [dm3] 3L_10817558_SNP [dm6]	G	A	4.112e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3L	14331642	3L_14331642_INS [dm3] 3L_14338542_INS [dm6]	C	CGCACAGCC	4.119e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19363031	2L_19363031_SNP [dm3] 2L_19363031_SNP [dm6]	C	A	4.125e^-4	1	UTR_5_PRIME dnt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12147546	2L_12147546_SNP [dm3] 2L_12147546_SNP [dm6]	G	A	4.127e^-4	1	INTRON CG31760
3R	17209280	3R_17209280_SNP [dm3] 3R_21383558_SNP [dm6]	C	T	4.129e^-4	1	INTERGENIC
2L	19330991	2L_19330991_SNP [dm3] 2L_19330991_SNP [dm6]	C	T	4.150e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	4512513	2L_4512513_SNP [dm3] 2L_4512513_SNP [dm6]	A	G	4.150e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6468279	2R_6468279_SNP [dm3] 2R_10580774_SNP [dm6]	A	T	4.150e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2885564	2L_2885564_SNP [dm3] 2L_2885564_SNP [dm6]	A	T	4.155e^-4	1	UPSTREAM lilli & 1 other INTRON NTPase	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	25982626	3R_25982626_SNP [dm3] 3R_30156904_SNP [dm6]	C	T	4.158e^-4	1	INTRON CG11498	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18107995	2L_18107995_SNP [dm3] 2L_18107995_SNP [dm6]	T	A	4.162e^-4	1	INTERGENIC
3L	18841345	3L_18841345_INS [dm3] 3L_18848245_INS [dm6]	T	TAT	4.180e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9057419	3L_9057419_SNP [dm3] 3L_9064319_SNP [dm6]	T	C	4.180e^-4	1	INTRON Argk	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10693164	X_10693164_SNP [dm3] X_10799131_SNP [dm6]	A	G	4.182e^-4	1	INTRON Imp
3L	1270940	3L_1270940_SNP [dm3] 3L_1270940_SNP [dm6]	T	C	4.189e^-4	1	INTRON CG9134
3R	18444444	3R_18444444_SNP [dm3] 3R_22618722_SNP [dm6]	G	T	4.189e^-4	1	NON_SYNONYMOUS_CODING mRpL45 DOWNSTREAM CG31161	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	24033547	3L_24033547_SNP [dm3] 3L_24040447_SNP [dm6]	C	T	4.192e^-4	1	INTERGENIC
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	4.196e^-4	1	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	781017	2L_781017_SNP [dm3] 2L_781017_SNP [dm6]	T	C	4.197e^-4	1	UTR_5_PRIME Gr21a UPSTREAM Gr21a	TF binding site mE1_TFBS_chinmo
2L	6571997	2L_6571997_SNP [dm3] 2L_6571997_SNP [dm6]	A	C	4.211e^-4	1	UTR_3_PRIME CG11319 INTRON CG11319
3R	23867625	3R_23867625_SNP [dm3] 3R_28041903_SNP [dm6]	A	C	4.221e^-4	1	INTRON CG34362
3L	8743216	3L_8743216_SNP [dm3] 3L_8750116_SNP [dm6]	C	A	4.234e^-4	1	UPSTREAM CG13306 INTERGENIC
X	12170972	X_12170972_SNP [dm3] X_12276939_SNP [dm6]	A	G	4.234e^-4	1	INTRON Ten-a
X	9492453	X_9492453_SNP [dm3] X_9598420_SNP [dm6]	A	G	4.236e^-4	1	INTERGENIC
2L	2501631	2L_2501631_SNP [dm3] 2L_2501631_SNP [dm6]	C	T	4.239e^-4	1	INTERGENIC
2L	5876504	2L_5876504_SNP [dm3] 2L_5876504_SNP [dm6]	C	T	4.245e^-4	1	INTRON rau
X	16843683	X_16843683_DEL [dm3] X_16949650_DEL [dm6]	TT	T	4.248e^-4	1	INTRON RhoGAP15B
3L	14356113	3L_14356113_SNP [dm3] 3L_14363013_SNP [dm6]	A	G	4.259e^-4	1	INTRON fz
2L	13962334	2L_13962334_SNP [dm3] 2L_13962334_SNP [dm6]	A	C	4.259e^-4	1	SYNONYMOUS_CODING NimA UTR_3_PRIME NimA
2R	18543979	2R_18543979_SNP [dm3] 2R_22656474_SNP [dm6]	G	T	4.271e^-4	1	UPSTREAM CG43326 INTRON CG43325 & 1 other EXON CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	8833951	3R_8833951_SNP [dm3] 3R_13008229_SNP [dm6]	A	G	4.273e^-4	1	UTR_3_PRIME CG7518 DOWNSTREAM CG8031 & 1 other	TF binding site mE1_TFBS_cad
3L	11317009	3L_11317009_SNP [dm3] 3L_11323909_SNP [dm6]	A	C	4.275e^-4	1	UPSTREAM CR44721 DOWNSTREAM CR44723 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	4.283e^-4	1	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2L	8978411	2L_8978411_INS [dm3] 2L_8978411_INS [dm6]	A	AT	4.287e^-4	1	INTRON CG13101
2L	8767254	2L_8767254_SNP [dm3] 2L_8767254_SNP [dm6]	G	A	4.310e^-4	1	SYNONYMOUS_CODING CG9463
2R	15025532	2R_15025532_SNP [dm3] 2R_19138027_SNP [dm6]	C	G	4.311e^-4	1	UPSTREAM CG15118 INTRON CG15111	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16890372	3R_16890372_SNP [dm3] 3R_21064650_SNP [dm6]	G	A	4.313e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6208942	2L_6208942_SNP [dm3] 2L_6208942_SNP [dm6]	C	A	4.320e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18136452	2L_18136452_SNP [dm3] 2L_18136452_SNP [dm6]	G	A	4.330e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	4.335e^-4	1	INTRON CG17834	TF binding site mE1_TFBS_HSA
X	8875168	X_8875168_SNP [dm3] X_8981135_SNP [dm6]	C	T	4.336e^-4	1	INTRON rdgA & 1 other
3L	2083034	3L_2083034_SNP [dm3] 3L_2083034_SNP [dm6]	T	C	4.347e^-4	1	SYNONYMOUS_CODING sls INTRON sls
3R	14983812	3R_14983812_SNP [dm3] 3R_19158090_SNP [dm6]	A	T	4.354e^-4	1	INTRON CG11779 & 1 other	TF binding site BDTNP1_TFBS_dl
2R	4137470	2R_4137470_SNP [dm3] 2R_8249965_SNP [dm6]	A	C	4.367e^-4	1	UPSTREAM CG44439 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad
2R	14518365	2R_14518365_SNP [dm3] 2R_18630860_SNP [dm6]	G	A	4.370e^-4	1	SYNONYMOUS_CODING CG5482
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	4.373e^-4	1	INTRON CG13917
2L	12235421	2L_12235421_SNP [dm3] 2L_12235421_SNP [dm6]	G	T	4.373e^-4	1	INTRON aret
X	2097613	X_2097613_SNP [dm3] X_2203580_SNP [dm6]	C	T	4.384e^-4	1	SYNONYMOUS_CODING CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3R	26007948	3R_26007948_SNP [dm3] 3R_30182226_SNP [dm6]	C	T	4.400e^-4	1	DOWNSTREAM Bet5 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6210468	2L_6210468_SNP [dm3] 2L_6210468_SNP [dm6]	G	A	4.400e^-4	1	UTR_3_PRIME CG34380 DOWNSTREAM CG34380
2R	15769024	2R_15769024_SNP [dm3] 2R_19881519_SNP [dm6]	T	G	4.411e^-4	1	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17786729	3R_17786729_SNP [dm3] 3R_21961007_SNP [dm6]	T	C	4.416e^-4	1	INTRON Eip93F
2L	3437104	2L_3437104_SNP [dm3] 2L_3437104_SNP [dm6]	C	A	4.428e^-4	1	INTERGENIC
3L	11859183	3L_11859183_SNP [dm3] 3L_11866083_SNP [dm6]	A	C	4.429e^-4	1	INTRON CG44837
2L	2846837	2L_2846837_SNP [dm3] 2L_2846837_SNP [dm6]	T	C	4.441e^-4	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG2983
3L	11759557	3L_11759557_INS [dm3] 3L_11766457_INS [dm6]	C	CAGGGAC	4.447e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2L	1705417	2L_1705417_SNP [dm3] 2L_1705417_SNP [dm6]	C	T	4.451e^-4	1	SYNONYMOUS_CODING cpb DOWNSTREAM chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	14121702	3L_14121702_SNP [dm3] 3L_14128602_SNP [dm6]	T	C	4.453e^-4	1	INTRON Sox21b
3L	5593884	3L_5593884_SNP [dm3] 3L_5600784_SNP [dm6]	A	G	4.455e^-4	1	DOWNSTREAM CG10590 INTERGENIC
3L	23713364	3L_23713364_SNP [dm3] 3L_23720264_SNP [dm6]	A	T	4.477e^-4	1	INTERGENIC	transposable element FlyBase
X	20025382	X_20025382_SNP [dm3] X_20131349_SNP [dm6]	C	T	4.480e^-4	1	UTR_5_PRIME CG42582
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	4.483e^-4	1	INTRON Duox
2R	11779661	2R_11779661_SNP [dm3] 2R_15892156_SNP [dm6]	A	G	4.484e^-4	1	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	20006075	X_20006075_SNP [dm3] X_20112042_SNP [dm6]	T	G	4.486e^-4	1	INTERGENIC
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	4.487e^-4	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16697997	3L_16697997_SNP [dm3] 3L_16704897_SNP [dm6]	A	T	4.492e^-4	1	UPSTREAM CG9692 INTRON Lasp & 1 other
X	12906565	X_12906565_SNP [dm3] X_13012532_SNP [dm6]	G	T	4.494e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19359271	2L_19359271_SNP [dm3] 2L_19359271_SNP [dm6]	C	G	4.502e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	12321185	2L_12321185_SNP [dm3] 2L_12321185_SNP [dm6]	G	T	4.505e^-4	1	INTERGENIC
2L	18655002	2L_18655002_SNP [dm3] 2L_18655002_SNP [dm6]	A	G	4.514e^-4	1	INTRON MESR3	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8965074	2L_8965074_SNP [dm3] 2L_8965074_SNP [dm6]	C	T	4.518e^-4	1	START_GAINED CG32984 UTR_5_PRIME CG32984 DOWNSTREAM CG32985
3L	2662294	3L_2662294_SNP [dm3] 3L_2662294_SNP [dm6]	T	C	4.524e^-4	1	DOWNSTREAM CG33233 INTRON Fife & 1 other
X	16806351	X_16806351_SNP [dm3] X_16912318_SNP [dm6]	C	T	4.526e^-4	1	UPSTREAM CG4928 INTRON CR44754
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	4.528e^-4	1	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8450236	3L_8450236_SNP [dm3] 3L_8457136_SNP [dm6]	A	T	4.529e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18033666	2R_18033666_SNP [dm3] 2R_22146161_SNP [dm6]	A	C	4.538e^-4	1	INTRON a
2R	7804811	2R_7804811_SNP [dm3] 2R_11917306_SNP [dm6]	A	G	4.548e^-4	1	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	20005862	X_20005862_SNP [dm3] X_20111829_SNP [dm6]	A	G	4.550e^-4	1	INTERGENIC
2L	1951152	2L_1951152_SNP [dm3] 2L_1951152_SNP [dm6]	G	A	4.553e^-4	1	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	8092878	X_8092878_SNP [dm3] X_8198845_SNP [dm6]	A	C	4.555e^-4	1	INTRON sdt
2L	12163227	2L_12163227_INS [dm3] 2L_12163227_INS [dm6]	T	TAAGAAATT	4.556e^-4	1	DOWNSTREAM CG31861 INTRON CG31760
2L	6208946	2L_6208946_SNP [dm3] 2L_6208946_SNP [dm6]	A	T	4.568e^-4	1	INTRON CG34380	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24103836	3R_24103836_SNP [dm3] 3R_28278114_SNP [dm6]	A	C	4.570e^-4	1	INTERGENIC
2L	18648517	2L_18648517_SNP [dm3] 2L_18648517_SNP [dm6]	T	C	4.572e^-4	1	INTRON MESR3
2R	18113741	2R_18113741_SNP [dm3] 2R_22226236_SNP [dm6]	G	A	4.573e^-4	1	SYNONYMOUS_CODING Oatp58Dc	TF binding site BDTNP1_TFBS_twi
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	4.574e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
X	19726813	X_19726813_SNP [dm3] X_19832780_SNP [dm6]	A	T	4.575e^-4	1	UTR_3_PRIME pico
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	4.583e^-4	1	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
X	12230089	X_12230089_SNP [dm3] X_12336056_SNP [dm6]	T	A	4.586e^-4	1	DOWNSTREAM Ten-a INTERGENIC
3L	3406266	3L_3406266_SNP [dm3] 3L_3406266_SNP [dm6]	G	A	4.590e^-4	1	INTRON sty
2L	8965061	2L_8965061_SNP [dm3] 2L_8965061_SNP [dm6]	G	T	4.591e^-4	1	UTR_5_PRIME CG32984 DOWNSTREAM CG32985
3L	6939089	3L_6939089_SNP [dm3] 3L_6945989_SNP [dm6]	A	T	4.603e^-4	1	INTRON tow	TF binding site mE1_TFBS_Kr
X	17333860	X_17333860_SNP [dm3] X_17439827_SNP [dm6]	T	G	4.606e^-4	1	INTRON CG12994
X	10813963	X_10813963_SNP [dm3] X_10919930_SNP [dm6]	C	T	4.611e^-4	1	SYNONYMOUS_CODING CG43901	TF binding site BDTNP1_TFBS_dl
3R	26120114	3R_26120114_SNP [dm3] 3R_30294392_SNP [dm6]	T	A	4.616e^-4	1	INTRON hdc
3R	14033189	3R_14033189_SNP [dm3] 3R_18207467_SNP [dm6]	T	A	4.620e^-4	1	INTRON CG7985
2L	2675315	2L_2675315_DEL [dm3] 2L_2675315_DEL [dm6]	GGA	G	4.629e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3L	23745789	3L_23745789_SNP [dm3] 3L_23752689_SNP [dm6]	C	T	4.638e^-4	1	INTERGENIC	transposable element FlyBase
2L	8529325	2L_8529325_SNP [dm3] 2L_8529325_SNP [dm6]	G	T	4.643e^-4	1	START_GAINED CG17834 UTR_5_PRIME CG17834 UPSTREAM lmgA & 1 other
X	2088714	X_2088714_DEL [dm3] X_2194681_DEL [dm6]	GGGAAAG	G	4.645e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18115585	2L_18115585_DEL [dm3] 2L_18115585_DEL [dm6]	TAGC	A	4.659e^-4	1	DOWNSTREAM CG15152 INTERGENIC
2R	8922179	2R_8922179_SNP [dm3] 2R_13034674_SNP [dm6]	T	C	4.661e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	11186197	X_11186197_SNP [dm3] X_11292164_SNP [dm6]	G	A	4.664e^-4	1	INTRON CG44422
2L	3800061	2L_3800061_SNP [dm3] 2L_3800061_SNP [dm6]	T	G	4.666e^-4	1	INTRON CG3921
2L	2501633	2L_2501633_SNP [dm3] 2L_2501633_SNP [dm6]	A	G	4.666e^-4	1	INTERGENIC
3L	13231561	3L_13231561_DEL [dm3] 3L_13238461_DEL [dm6]	AA	A	4.675e^-4	1	INTRON caps
2R	19112174	2R_19112174_SNP [dm3] 2R_23224651_SNP [dm6]	G	T	4.676e^-4	1	INTERGENIC
2L	6953773	2L_6953773_SNP [dm3] 2L_6953773_SNP [dm6]	C	T	4.678e^-4	1	DOWNSTREAM CG13775 INTRON SA
2L	14422646	2L_14422646_SNP [dm3] 2L_14422646_SNP [dm6]	G	A	4.679e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8759623	2R_8759623_SNP [dm3] 2R_12872118_SNP [dm6]	G	A	4.687e^-4	1	UPSTREAM CR43469 DOWNSTREAM bic & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	17147177	3R_17147177_SNP [dm3] 3R_21321455_SNP [dm6]	C	A	4.688e^-4	1	INTRON CG16791	TF binding site mE1_TFBS_cad
3L	11795439	3L_11795439_INS [dm3] 3L_11802339_INS [dm6]	C	CA	4.705e^-4	1	UPSTREAM tRNA:CR32093 INTRON CG42255
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	4.713e^-4	1	INTRON CG34377
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	4.719e^-4	1	INTERGENIC
2L	10368919	2L_10368919_SNP [dm3] 2L_10368919_SNP [dm6]	G	T	4.719e^-4	1	DOWNSTREAM CG5056 INTRON rho-5	TF binding site mE1_TFBS_cad
3R	20844486	3R_20844486_SNP [dm3] 3R_25018764_SNP [dm6]	G	A	4.728e^-4	1	NON_SYNONYMOUS_CODING tnc
X	12141720	X_12141720_SNP [dm3] X_12247687_SNP [dm6]	A	G	4.734e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	21463715	X_21463715_SNP [dm3] X_21592688_SNP [dm6]	T	A	4.747e^-4	1	INTERGENIC
2R	19110189	2R_19110189_SNP [dm3] 2R_23222666_SNP [dm6]	C	A	4.770e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19110190	2R_19110190_SNP [dm3] 2R_23222667_SNP [dm6]	A	C	4.770e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8921245	2R_8921245_SNP [dm3] 2R_13033740_SNP [dm6]	T	C	4.773e^-4	1	INTERGENIC
2L	16141164	2L_16141164_DEL [dm3] 2L_16141164_DEL [dm6]	GCGATCGAAATAAAG...	G	4.774e^-4	1	INTERGENIC
2L	486752	2L_486752_SNP [dm3] 2L_486752_SNP [dm6]	G	A	4.778e^-4	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	10538324	3R_10538324_SNP [dm3] 3R_14712602_SNP [dm6]	T	A	4.782e^-4	1	INTRON kibra	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	4.790e^-4	1	INTRON Doa
X	17167944	X_17167944_SNP [dm3] X_17273911_SNP [dm6]	T	C	4.800e^-4	1	INTRON f
3L	13466380	3L_13466380_SNP [dm3] 3L_13473280_SNP [dm6]	C	T	4.807e^-4	1	INTRON CG10089
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	4.810e^-4	1	UPSTREAM CG8012 INTERGENIC
2L	9943405	2L_9943405_DEL [dm3] 2L_9943405_DEL [dm6]	AGCTTAATTAACTCAATCTT...	A	4.823e^-4	1	DOWNSTREAM CG4619 INTRON CG5853
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	4.824e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10981415	2L_10981415_SNP [dm3] 2L_10981415_SNP [dm6]	G	A	4.826e^-4	1	SYNONYMOUS_CODING SCAR DOWNSTREAM piwi	TF binding site mE1_TFBS_cad
3R	22288715	3R_22288715_SNP [dm3] 3R_26462993_SNP [dm6]	C	T	4.827e^-4	1	INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22288729	3R_22288729_SNP [dm3] 3R_26463007_SNP [dm6]	C	T	4.827e^-4	1	INTRON CG5455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18152648	2L_18152648_SNP [dm3] 2L_18152648_SNP [dm6]	A	G	4.840e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	11759504	3L_11759504_SNP [dm3] 3L_11766404_SNP [dm6]	T	A	4.841e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	1583147	3L_1583147_SNP [dm3] 3L_1583147_SNP [dm6]	A	G	4.847e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	18884780	X_18884780_SNP [dm3] X_18990747_SNP [dm6]	C	G	4.855e^-4	1	INTRON CG43759	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18150374	3L_18150374_SNP [dm3] 3L_18157274_SNP [dm6]	C	A	4.864e^-4	1	INTRON CG13699
X	19780270	X_19780270_SNP [dm3] X_19886237_SNP [dm6]	T	G	4.870e^-4	1	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26031253	3R_26031253_SNP [dm3] 3R_30205531_SNP [dm6]	A	C	4.877e^-4	1	DOWNSTREAM RpS7 INTERGENIC
2R	20423839	2R_20423839_SNP [dm3] 2R_24536316_SNP [dm6]	T	C	4.878e^-4	1	SYNONYMOUS_CODING CG11413 UTR_5_PRIME CG4622 UPSTREAM CG4622	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18462572	2L_18462572_SNP [dm3] 2L_18462572_SNP [dm6]	G	C	4.879e^-4	1	INTRON let-7-C	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	4.884e^-4	1	INTRON beat-VII
2L	3084820	2L_3084820_SNP [dm3] 2L_3084820_SNP [dm6]	G	A	4.884e^-4	1	INTRON toc
2L	6553600	2L_6553600_SNP [dm3] 2L_6553600_SNP [dm6]	G	A	4.886e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	10014440	X_10014440_SNP [dm3] X_10120407_SNP [dm6]	T	C	4.896e^-4	1	INTRON RhoU & 1 other
2L	9968920	2L_9968920_SNP [dm3] 2L_9968920_SNP [dm6]	T	C	4.898e^-4	1	DOWNSTREAM RpL13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	1100608	2L_1100608_SNP [dm3] 2L_1100608_SNP [dm6]	A	T	4.900e^-4	1	INTRON CG4629
3L	24044561	3L_24044561_SNP [dm3] 3L_24051461_SNP [dm6]	A	G	4.904e^-4	1	INTERGENIC
3R	15166742	3R_15166742_SNP [dm3] 3R_19341020_SNP [dm6]	C	G	4.914e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2187454	3L_2187454_SNP [dm3] 3L_2187454_SNP [dm6]	C	T	4.917e^-4	1	SYNONYMOUS_CODING CG13810	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	4.922e^-4	1	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
3L	390458	3L_390458_SNP [dm3] 3L_390458_SNP [dm6]	C	A	4.924e^-4	1	INTRON trh
2R	17338366	2R_17338366_SNP [dm3] 2R_21450861_SNP [dm6]	C	G	4.927e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17338379	2R_17338379_SNP [dm3] 2R_21450874_SNP [dm6]	G	T	4.927e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17333997	X_17333997_SNP [dm3] X_17439964_SNP [dm6]	G	C	4.929e^-4	1	INTRON CG12994
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	4.942e^-4	1	UPSTREAM para INTERGENIC
3R	15623291	3R_15623291_SNP [dm3] 3R_19797569_SNP [dm6]	T	C	4.958e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	24752213	3R_24752213_SNP [dm3] 3R_28926491_SNP [dm6]	G	T	4.962e^-4	1	INTRON CG14521
3R	24752216	3R_24752216_SNP [dm3] 3R_28926494_SNP [dm6]	T	C	4.962e^-4	1	INTRON CG14521
3R	24752226	3R_24752226_SNP [dm3] 3R_28926504_SNP [dm6]	G	A	4.962e^-4	1	INTRON CG14521
X	10014177	X_10014177_SNP [dm3] X_10120144_SNP [dm6]	G	T	4.963e^-4	1	INTRON RhoU & 1 other
2R	4259353	2R_4259353_SNP [dm3] 2R_8371848_SNP [dm6]	C	T	4.981e^-4	1	SYNONYMOUS_CODING CG8701 INTRON pdm3
2R	8759902	2R_8759902_SNP [dm3] 2R_12872397_SNP [dm6]	T	C	4.983e^-4	1	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3896623	2R_3896623_SNP [dm3] 2R_8009118_SNP [dm6]	T	C	4.990e^-4	1	DOWNSTREAM CG14762 & 1 other INTERGENIC
3L	12508494	3L_12508494_SNP [dm3] 3L_12515394_SNP [dm6]	T	A	4.991e^-4	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
X	12173080	X_12173080_SNP [dm3] X_12279047_SNP [dm6]	T	C	5.008e^-4	1	INTRON Ten-a
2R	21070058	2R_21070058_SNP [dm3] 2R_25182535_SNP [dm6]	A	G	5.010e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6078608	X_6078608_SNP [dm3] X_6184575_SNP [dm6]	G	C	5.011e^-4	1	INTRON Ca-alpha1T
3R	24762530	3R_24762530_SNP [dm3] 3R_28936808_SNP [dm6]	A	T	5.023e^-4	1	INTRON CG14521
3R	20841719	3R_20841719_SNP [dm3] 3R_25015997_SNP [dm6]	G	C	5.024e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	5.036e^-4	1	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19727082	X_19727082_SNP [dm3] X_19833049_SNP [dm6]	G	A	5.040e^-4	1	UTR_3_PRIME pico
X	19726815	X_19726815_INS [dm3] X_19832782_INS [dm6]	T	TGT	5.041e^-4	1	UTR_3_PRIME pico
2L	6953777	2L_6953777_SNP [dm3] 2L_6953777_SNP [dm6]	C	A	5.046e^-4	1	DOWNSTREAM CG13775 INTRON SA
2L	8754540	2L_8754540_SNP [dm3] 2L_8754540_SNP [dm6]	C	T	5.058e^-4	1	INTERGENIC
3L	2662300	3L_2662300_SNP [dm3] 3L_2662300_SNP [dm6]	C	T	5.058e^-4	1	DOWNSTREAM CG33233 INTRON Fife & 1 other
2R	15272480	2R_15272480_INS [dm3] 2R_19384975_INS [dm6]	T	TA	5.070e^-4	1	UPSTREAM CG10081 DOWNSTREAM CG10073 INTERGENIC
2L	2841011	2L_2841011_SNP [dm3] 2L_2841011_SNP [dm6]	G	C	5.081e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
X	16844012	X_16844012_SNP [dm3] X_16949979_SNP [dm6]	C	T	5.084e^-4	1	INTRON RhoGAP15B
3L	13465807	3L_13465807_SNP [dm3] 3L_13472707_SNP [dm6]	T	C	5.086e^-4	1	INTRON CG10089
X	19780164	X_19780164_SNP [dm3] X_19886131_SNP [dm6]	A	T	5.105e^-4	1	UTR_3_PRIME amn INTRON Hers	TF binding site mE1_TFBS_Trl
3R	23867925	3R_23867925_SNP [dm3] 3R_28042203_SNP [dm6]	T	A	5.123e^-4	1	INTRON CG34362
X	3628983	X_3628983_INS [dm3] X_3734950_INS [dm6]	C	CG	5.130e^-4	1	INTRON tlk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	3998092	3L_3998092_SNP [dm3] 3L_3998092_SNP [dm6]	A	G	5.132e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1579475	2L_1579475_SNP [dm3] 2L_1579475_SNP [dm6]	C	T	5.136e^-4	1	INTRON haf	TF binding site mE1_TFBS_sens
3L	14419078	3L_14419078_SNP [dm3] 3L_14425978_SNP [dm6]	T	C	5.141e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc
2L	10058873	2L_10058873_SNP [dm3] 2L_10058873_SNP [dm6]	T	C	5.161e^-4	1	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15812539	3R_15812539_SNP [dm3] 3R_19986817_SNP [dm6]	G	T	5.161e^-4	1	INTRON Hs6st
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	5.172e^-4	1	INTRON RunxB
X	17452845	X_17452845_SNP [dm3] X_17558812_SNP [dm6]	C	T	5.173e^-4	1	INTRON CG43658
2L	3634303	2L_3634303_SNP [dm3] 2L_3634303_SNP [dm6]	C	T	5.181e^-4	1	SYNONYMOUS_CODING for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA
2R	7433713	2R_7433713_SNP [dm3] 2R_11546208_SNP [dm6]	T	C	5.184e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16006309	3R_16006309_SNP [dm3] 3R_20180587_SNP [dm6]	G	T	5.190e^-4	1	INTERGENIC
2L	2059206	2L_2059206_SNP [dm3] 2L_2059206_SNP [dm6]	G	T	5.201e^-4	1	UTR_3_PRIME dpr3
2L	2841038	2L_2841038_SNP [dm3] 2L_2841038_SNP [dm6]	A	G	5.211e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
3R	25288119	3R_25288119_SNP [dm3] 3R_29462397_SNP [dm6]	G	A	5.215e^-4	1	SYNONYMOUS_CODING Ptp99A INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	22068091	X_22068091_SNP [dm3] X_22666255_SNP [dm6]	C	A	5.216e^-4	1	INTRON CR44997
3L	10039287	3L_10039287_SNP [dm3] 3L_10046187_SNP [dm6]	A	G	5.224e^-4	1	INTRON dpr6
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	5.224e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18427312	2L_18427312_SNP [dm3] 2L_18427312_SNP [dm6]	G	A	5.224e^-4	1	INTERGENIC
X	6078371	X_6078371_DEL [dm3] X_6184338_DEL [dm6]	AA	A	5.229e^-4	1	INTRON Ca-alpha1T
3R	17219333	3R_17219333_SNP [dm3] 3R_21393611_SNP [dm6]	G	C	5.230e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	18113383	2L_18113383_SNP [dm3] 2L_18113383_SNP [dm6]	C	T	5.237e^-4	1	UPSTREAM CG44476 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20205339	2R_20205339_SNP [dm3] 2R_24317816_SNP [dm6]	C	G	5.237e^-4	1	INTERGENIC
X	8750195	X_8750195_DEL [dm3] X_8856162_DEL [dm6]	AA	A	5.240e^-4	1	INTRON CG12075
3R	24743357	3R_24743357_SNP [dm3] 3R_28917635_SNP [dm6]	A	T	5.245e^-4	1	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	5.252e^-4	1	INTERGENIC
2R	9311747	2R_9311747_SNP [dm3] 2R_13424242_SNP [dm6]	T	C	5.254e^-4	1	UTR_5_PRIME CG42321 UPSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA
3R	22530172	3R_22530172_SNP [dm3] 3R_26704450_SNP [dm6]	T	C	5.258e^-4	1	INTRON amon
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	5.259e^-4	1	INTRON CG5888
3R	22675432	3R_22675432_SNP [dm3] 3R_26849710_SNP [dm6]	G	C	5.260e^-4	1	INTRON Lerp
2L	7417360	2L_7417360_INS [dm3] 2L_7417360_INS [dm6]	T	TTT	5.274e^-4	1	INTRON chm	TF binding site BDTNP1_TFBS_dl
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	5.280e^-4	1	INTERGENIC
2L	4670471	2L_4670471_SNP [dm3] 2L_4670471_SNP [dm6]	G	A	5.284e^-4	1	INTERGENIC
X	6078471	X_6078471_SNP [dm3] X_6184438_SNP [dm6]	G	A	5.289e^-4	1	INTRON Ca-alpha1T
3L	13146211	3L_13146211_SNP [dm3] 3L_13153111_SNP [dm6]	A	G	5.290e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	5.302e^-4	1	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	7886406	3L_7886406_SNP [dm3] 3L_7893306_SNP [dm6]	G	C	5.305e^-4	1	NON_SYNONYMOUS_CODING CG32365
3R	10296512	3R_10296512_SNP [dm3] 3R_14470790_SNP [dm6]	A	G	5.308e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9868368	3L_9868368_SNP [dm3] 3L_9875268_SNP [dm6]	T	A	5.311e^-4	1	UPSTREAM CR45406 INTERGENIC
2L	7536857	2L_7536857_SNP [dm3] 2L_7536857_SNP [dm6]	G	A	5.315e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	23703940	3L_23703940_SNP [dm3] 3L_23710840_SNP [dm6]	A	C	5.316e^-4	1	INTERGENIC	transposable element FlyBase
3L	23752041	3L_23752041_SNP [dm3] 3L_23758941_SNP [dm6]	A	G	5.316e^-4	1	INTERGENIC	transposable element FlyBase
3L	24002254	3L_24002254_SNP [dm3] 3L_24009154_SNP [dm6]	T	C	5.316e^-4	1	DOWNSTREAM CR40053 INTERGENIC
3L	24002578	3L_24002578_DEL [dm3] 3L_24009478_DEL [dm6]	ACTCTATGCA	A	5.316e^-4	1	DOWNSTREAM CR40053 INTERGENIC
3L	24042150	3L_24042150_SNP [dm3] 3L_24049050_SNP [dm6]	T	C	5.316e^-4	1	INTERGENIC
3L	24042180	3L_24042180_SNP [dm3] 3L_24049080_SNP [dm6]	A	G	5.316e^-4	1	INTERGENIC
3L	24042907	3L_24042907_DEL [dm3] 3L_24049807_DEL [dm6]	ACAACTTAAAATGACTCTAT...	A	5.316e^-4	1	INTERGENIC
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	5.317e^-4	1	DOWNSTREAM CG31785 INTRON CG5758
X	10818805	X_10818805_SNP [dm3] X_10924772_SNP [dm6]	G	T	5.326e^-4	1	SYNONYMOUS_CODING v
2R	9523837	2R_9523837_SNP [dm3] 2R_13636332_SNP [dm6]	G	A	5.331e^-4	1	INTRON fas
3R	22087373	3R_22087373_SNP [dm3] 3R_26261651_SNP [dm6]	T	A	5.335e^-4	1	UPSTREAM Ald DOWNSTREAM CR44321 INTERGENIC
3L	893221	3L_893221_SNP [dm3] 3L_893221_SNP [dm6]	T	A	5.339e^-4	1	UTR_3_PRIME CG32479
X	4260640	X_4260640_SNP [dm3] X_4366607_SNP [dm6]	G	A	5.341e^-4	1	NON_SYNONYMOUS_CODING CG3626 UPSTREAM mir-982 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_kn mE1_TFBS_sens
3R	26792926	3R_26792926_SNP [dm3] 3R_30967204_SNP [dm6]	G	C	5.342e^-4	1	INTERGENIC
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	5.346e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	7413345	2R_7413345_SNP [dm3] 2R_11525840_SNP [dm6]	A	G	5.349e^-4	1	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	16890781	3R_16890781_SNP [dm3] 3R_21065059_SNP [dm6]	C	T	5.353e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	3875419	3R_3875419_SNP [dm3] 3R_8049697_SNP [dm6]	T	C	5.357e^-4	1	UTR_5_PRIME CG43061 DOWNSTREAM CG43618 INTRON CG43060
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	5.361e^-4	1	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	7394042	2L_7394042_SNP [dm3] 2L_7394042_SNP [dm6]	C	G	5.362e^-4	1	INTRON CG5160
3L	23736781	3L_23736781_SNP [dm3] 3L_23743681_SNP [dm6]	G	T	5.364e^-4	1	INTRON CG17698	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	17785761	3R_17785761_INS [dm3] 3R_21960039_INS [dm6]	C	CA	5.365e^-4	1	INTRON Eip93F	TF binding site mE1_TFBS_ftz_f1
3L	8605017	3L_8605017_SNP [dm3] 3L_8611917_SNP [dm6]	T	G	5.368e^-4	1	INTRON CG6282
3L	676864	3L_676864_SNP [dm3] 3L_676864_SNP [dm6]	C	T	5.374e^-4	1	INTERGENIC
3L	3470385	3L_3470385_SNP [dm3] 3L_3470385_SNP [dm6]	T	C	5.376e^-4	1	SPLICE_SITE_REGION CG14971 INTRON CG14971
3R	22289282	3R_22289282_SNP [dm3] 3R_26463560_SNP [dm6]	A	G	5.378e^-4	1	INTRON CG5455
2R	8760070	2R_8760070_SNP [dm3] 2R_12872565_SNP [dm6]	A	C	5.382e^-4	1	UPSTREAM CR43469 DOWNSTREAM CG3790 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19782454	X_19782454_SNP [dm3] X_19888421_SNP [dm6]	C	T	5.389e^-4	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11194498	3L_11194498_SNP [dm3] 3L_11201398_SNP [dm6]	G	A	5.389e^-4	1	UTR_5_PRIME CG14141 DOWNSTREAM CG7607 INTRON Plod
2L	4635285	2L_4635285_SNP [dm3] 2L_4635285_SNP [dm6]	C	G	5.396e^-4	1	UPSTREAM CR45452 INTERGENIC
3L	9376134	3L_9376134_INS [dm3] 3L_9383034_INS [dm6]	C	CC	5.399e^-4	1	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22429797	3R_22429797_SNP [dm3] 3R_26604075_SNP [dm6]	T	A	5.407e^-4	1	DOWNSTREAM scrib INTERGENIC
2L	4202476	2L_4202476_SNP [dm3] 2L_4202476_SNP [dm6]	C	A	5.408e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4202479	2L_4202479_SNP [dm3] 2L_4202479_SNP [dm6]	G	A	5.408e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20841722	3R_20841722_SNP [dm3] 3R_25016000_SNP [dm6]	T	C	5.419e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20563824	X_20563824_SNP [dm3] X_20692797_SNP [dm6]	T	C	5.421e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	12318079	X_12318079_SNP [dm3] X_12424046_SNP [dm6]	A	T	5.427e^-4	1	INTERGENIC
2R	6448446	2R_6448446_SNP [dm3] 2R_10560941_SNP [dm6]	G	A	5.429e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5894050	2L_5894050_SNP [dm3] 2L_5894050_SNP [dm6]	A	G	5.433e^-4	1	UPSTREAM Acp26Aa INTERGENIC
3R	16890366	3R_16890366_SNP [dm3] 3R_21064644_SNP [dm6]	G	A	5.452e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2R	17759481	2R_17759481_SNP [dm3] 2R_21871976_SNP [dm6]	G	A	5.454e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2755699	X_2755699_SNP [dm3] X_2861666_SNP [dm6]	T	C	5.464e^-4	1	INTRON kirre
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	5.470e^-4	1	INTRON unc-13-4A
X	15028221	X_15028221_SNP [dm3] X_15134188_SNP [dm6]	T	C	5.476e^-4	1	INTRON drd
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	5.478e^-4	1	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2L	4078683	2L_4078683_SNP [dm3] 2L_4078683_SNP [dm6]	A	T	5.489e^-4	1	INTRON ed
2R	14770136	2R_14770136_SNP [dm3] 2R_18882631_SNP [dm6]	C	T	5.494e^-4	1	INTRON sano
3R	27465088	3R_27465088_SNP [dm3] 3R_31639366_SNP [dm6]	G	C	5.498e^-4	1	INTRON kek6	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17004194	3R_17004194_SNP [dm3] 3R_21178472_SNP [dm6]	A	G	5.504e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13761965	2R_13761965_DEL [dm3] 2R_17874460_DEL [dm6]	TCTGA	T	5.509e^-4	1	INTRON Elk
2R	3896561	2R_3896561_SNP [dm3] 2R_8009056_SNP [dm6]	T	A	5.512e^-4	1	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
2L	12874125	2L_12874125_SNP [dm3] 2L_12874125_SNP [dm6]	C	A	5.516e^-4	1	INTERGENIC
3R	6946669	3R_6946669_SNP [dm3] 3R_11120947_SNP [dm6]	T	A	5.517e^-4	1	INTERGENIC
2L	8087849	2L_8087849_SNP [dm3] 2L_8087849_SNP [dm6]	A	G	5.517e^-4	1	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
X	12906563	X_12906563_SNP [dm3] X_13012530_SNP [dm6]	A	G	5.528e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15116222	X_15116222_SNP [dm3] X_15222189_SNP [dm6]	C	T	5.528e^-4	1	DOWNSTREAM CG43076 INTERGENIC
3L	23681791	3L_23681791_SNP [dm3] 3L_23688691_SNP [dm6]	A	G	5.532e^-4	1	INTRON AGO3
3R	24793424	3R_24793424_SNP [dm3] 3R_28967702_SNP [dm6]	G	T	5.535e^-4	1	INTRON CG14521
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	5.537e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16891394	3R_16891394_SNP [dm3] 3R_21065672_SNP [dm6]	G	A	5.539e^-4	1	UPSTREAM AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	15178453	X_15178453_DEL [dm3] X_15284420_DEL [dm6]	AA	A	5.543e^-4	1	INTERGENIC
2L	6581630	2L_6581630_SNP [dm3] 2L_6581630_SNP [dm6]	C	T	5.562e^-4	1	INTRON CG11319
3L	6621548	3L_6621548_SNP [dm3] 3L_6628448_SNP [dm6]	C	G	5.567e^-4	1	INTRON GluRIA
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	5.570e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2841042	2L_2841042_SNP [dm3] 2L_2841042_SNP [dm6]	T	C	5.579e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
2L	15949285	2L_15949285_SNP [dm3] 2L_15949285_SNP [dm6]	G	A	5.584e^-4	1	INTRON beat-Ib
3R	24706719	3R_24706719_SNP [dm3] 3R_28880997_SNP [dm6]	C	T	5.609e^-4	1	SYNONYMOUS_CODING CG14527 UPSTREAM CG14523 INTRON CG33203
3R	26633817	3R_26633817_SNP [dm3] 3R_30808095_SNP [dm6]	T	A	5.618e^-4	1	UPSTREAM cindr DOWNSTREAM dj-1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	26009192	3R_26009192_SNP [dm3] 3R_30183470_SNP [dm6]	T	C	5.622e^-4	1	DOWNSTREAM CR44262 INTERGENIC
X	3628684	X_3628684_SNP [dm3] X_3734651_SNP [dm6]	T	C	5.634e^-4	1	INTRON tlk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	25993384	3R_25993384_SNP [dm3] 3R_30167662_SNP [dm6]	G	T	5.638e^-4	1	INTRON CG31028
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	5.642e^-4	1	INTRON RunxB
2R	7321998	2R_7321998_SNP [dm3] 2R_11434493_SNP [dm6]	T	C	5.646e^-4	1	INTERGENIC
3L	23726003	3L_23726003_SNP [dm3] 3L_23732903_SNP [dm6]	C	T	5.647e^-4	1	UPSTREAM CR45736 INTERGENIC	transposable element FlyBase
3R	24707221	3R_24707221_SNP [dm3] 3R_28881499_SNP [dm6]	A	C	5.648e^-4	1	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
3R	14448514	3R_14448514_SNP [dm3] 3R_18622792_SNP [dm6]	A	T	5.654e^-4	1	INTRON qin	TF binding site mE1_TFBS_inv

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.431e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.01438
In_3R_Mo	0.09842

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	7.0899	0.0289
In_3R_Mo	6.6996	0.0351

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1736 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	7.054e^-8	0.125	INTRON fas
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	1.334e^-7	0.125	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	4.102e^-7	0.256	UPSTREAM CG15865 INTRON r
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	1.481e^-6	0.569	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	1.518e^-6	0.569	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
X	16559459	X_16559459_SNP [dm3] X_16665426_SNP [dm6]	G	A	1.830e^-6	0.572	UPSTREAM CG15865 INTRON r
X	16559445	X_16559445_SNP [dm3] X_16665412_SNP [dm6]	A	T	2.464e^-6	0.595	UPSTREAM CG15865 INTRON r
X	16559447	X_16559447_SNP [dm3] X_16665414_SNP [dm6]	G	C	2.715e^-6	0.595	UPSTREAM CG15865 INTRON r
X	16559450	X_16559450_SNP [dm3] X_16665417_SNP [dm6]	T	C	2.857e^-6	0.595	UPSTREAM CG15865 INTRON r
X	16559458	X_16559458_SNP [dm3] X_16665425_SNP [dm6]	C	A	3.831e^-6	0.665	UPSTREAM CG15865 INTRON r
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	3.902e^-6	0.665	UTR_3_PRIME CG31030
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	5.037e^-6	0.786	UPSTREAM CG5758 INTERGENIC
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	5.901e^-6	0.834	SYNONYMOUS_CODING CG15210 INTRON sbr
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	6.228e^-6	0.834	INTRON fas
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	7.838e^-6	0.975	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16559414	X_16559414_SNP [dm3] X_16665381_SNP [dm6]	C	T	9.054e^-6	0.975	UPSTREAM CG15865 INTRON r
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	9.304e^-6	0.975	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	1.053e^-5	0.975	INTRON fas
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	1.075e^-5	0.975	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	1.091e^-5	0.975	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	1.282e^-5	0.975	INTRON CG43729
2R	11340059	2R_11340059_SNP [dm3] 2R_15452554_SNP [dm6]	T	C	1.282e^-5	0.975	INTRON CG43729
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	1.368e^-5	0.975	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.392e^-5	0.975	DOWNSTREAM CR44629 & 1 other INTERGENIC
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.436e^-5	0.975	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
X	16559535	X_16559535_SNP [dm3] X_16665502_SNP [dm6]	A	T	1.451e^-5	0.975	INTRON r
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	1.528e^-5	0.975	INTRON CG9541
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	1.651e^-5	0.975	INTRON bbg
3L	13040774	3L_13040774_SNP [dm3] 3L_13047674_SNP [dm6]	T	C	1.658e^-5	0.975	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11339848	2R_11339848_SNP [dm3] 2R_15452343_SNP [dm6]	C	A	1.763e^-5	0.975	INTRON CG43729
2R	11339849	2R_11339849_SNP [dm3] 2R_15452344_SNP [dm6]	G	C	1.763e^-5	0.975	INTRON CG43729
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	1.780e^-5	0.975	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2L	16129464	2L_16129464_SNP [dm3] 2L_16129464_SNP [dm6]	T	A	1.877e^-5	0.975	INTERGENIC	TF binding site mE1_TFBS_inv
X	16559537	X_16559537_INS [dm3] X_16665504_INS [dm6]	A	AGA	1.880e^-5	0.975	INTRON r
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	1.919e^-5	0.975	DOWNSTREAM CG5556 INTERGENIC
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	1.962e^-5	0.975	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	2.002e^-5	0.975	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	2.026e^-5	0.975	INTRON CG1461
3R	6946669	3R_6946669_SNP [dm3] 3R_11120947_SNP [dm6]	T	A	2.029e^-5	0.975	INTERGENIC
X	6078425	X_6078425_SNP [dm3] X_6184392_SNP [dm6]	G	A	2.101e^-5	0.975	INTRON Ca-alpha1T
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	2.133e^-5	0.975	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	2.209e^-5	0.98	INTRON CG43729
3R	20517771	3R_20517771_DEL [dm3] 3R_24692049_DEL [dm6]	TT	T	2.430e^-5	0.98	INTRON slo
2R	11325802	2R_11325802_SNP [dm3] 2R_15438297_SNP [dm6]	A	G	2.448e^-5	0.98	INTRON CG43729
2R	11326862	2R_11326862_SNP [dm3] 2R_15439357_SNP [dm6]	C	T	2.476e^-5	0.98	INTRON CG43729
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	2.581e^-5	0.98	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	2.601e^-5	0.98	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.675e^-5	0.98	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	2.738e^-5	0.98	INTRON Ten-a
X	6078371	X_6078371_DEL [dm3] X_6184338_DEL [dm6]	AA	A	2.783e^-5	0.98	INTRON Ca-alpha1T
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	2.895e^-5	0.98	DOWNSTREAM Bace INTRON Dh31
2L	18149841	2L_18149841_SNP [dm3] 2L_18149841_SNP [dm6]	G	A	2.923e^-5	0.98	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
X	6078452	X_6078452_SNP [dm3] X_6184419_SNP [dm6]	G	A	2.932e^-5	0.98	INTRON Ca-alpha1T
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	2.998e^-5	0.98	INTRON twi & 1 other
2L	10058873	2L_10058873_SNP [dm3] 2L_10058873_SNP [dm6]	T	C	3.018e^-5	0.98	SYNONYMOUS_CODING Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6078608	X_6078608_SNP [dm3] X_6184575_SNP [dm6]	G	C	3.167e^-5	0.98	INTRON Ca-alpha1T
X	12146582	X_12146582_SNP [dm3] X_12252549_SNP [dm6]	G	A	3.173e^-5	0.98	INTRON Ten-a
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	3.176e^-5	0.98	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6078339	X_6078339_SNP [dm3] X_6184306_SNP [dm6]	C	T	3.185e^-5	0.98	INTRON Ca-alpha1T
2R	17979845	2R_17979845_SNP [dm3] 2R_22092340_SNP [dm6]	A	T	3.215e^-5	0.98	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8153986	2R_8153986_SNP [dm3] 2R_12266481_SNP [dm6]	G	T	3.307e^-5	0.98	INTRON Cam
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	3.315e^-5	0.98	INTRON dpr3
2L	17753088	2L_17753088_SNP [dm3] 2L_17753088_SNP [dm6]	G	T	3.406e^-5	0.98	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	3.439e^-5	0.98	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	3.492e^-5	0.98	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	10058797	2L_10058797_SNP [dm3] 2L_10058797_SNP [dm6]	A	T	3.527e^-5	0.98	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17753076	2L_17753076_SNP [dm3] 2L_17753076_SNP [dm6]	C	G	3.544e^-5	0.98	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	18139644	2L_18139644_SNP [dm3] 2L_18139644_SNP [dm6]	G	A	3.555e^-5	0.98	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	3.709e^-5	0.983	INTRON CG43729
3L	13040861	3L_13040861_SNP [dm3] 3L_13047761_SNP [dm6]	T	C	3.730e^-5	0.983	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	3.780e^-5	0.983	INTERGENIC
2L	8972265	2L_8972265_SNP [dm3] 2L_8972265_SNP [dm6]	C	A	3.918e^-5	0.983	SYNONYMOUS_CODING CG9541
2R	11333214	2R_11333214_SNP [dm3] 2R_15445709_SNP [dm6]	G	A	4.059e^-5	0.983	INTRON CG43729
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	4.148e^-5	0.983	INTRON CG43729
2L	17753079	2L_17753079_SNP [dm3] 2L_17753079_SNP [dm6]	A	G	4.245e^-5	0.983	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	17753508	2L_17753508_SNP [dm3] 2L_17753508_SNP [dm6]	T	A	4.281e^-5	0.983	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11927865	3L_11927865_SNP [dm3] 3L_11934765_SNP [dm6]	C	T	4.450e^-5	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
X	2379381	X_2379381_SNP [dm3] X_2485348_SNP [dm6]	A	C	4.530e^-5	0.983	INTRON trol
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	4.619e^-5	0.983	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9367233	3L_9367233_INS [dm3] 3L_9374133_INS [dm6]	A	ACTATATA	4.644e^-5	0.983	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	9523880	2R_9523880_SNP [dm3] 2R_13636375_SNP [dm6]	G	A	4.711e^-5	0.983	INTRON fas
3L	12028219	3L_12028219_SNP [dm3] 3L_12035119_SNP [dm6]	G	A	4.780e^-5	0.983	INTRON rols	TF binding site BDTNP1_TFBS_twi
3L	11927827	3L_11927827_SNP [dm3] 3L_11934727_SNP [dm6]	C	T	4.804e^-5	0.983	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	4.826e^-5	0.983	UTR_3_PRIME CG31030
2R	11339841	2R_11339841_SNP [dm3] 2R_15452336_SNP [dm6]	G	C	4.862e^-5	0.983	INTRON CG43729
2L	18099946	2L_18099946_SNP [dm3] 2L_18099946_SNP [dm6]	C	A	4.939e^-5	0.983	INTERGENIC
3R	6530439	3R_6530439_SNP [dm3] 3R_10704717_SNP [dm6]	A	T	5.118e^-5	0.983	SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	5.130e^-5	0.983	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3L	19153221	3L_19153221_SNP [dm3] 3L_19160121_SNP [dm6]	G	C	5.145e^-5	0.983	INTRON fz2	TF binding site mE1_TFBS_Trl
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	5.167e^-5	0.983	INTRON fas
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	5.184e^-5	0.983	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	5.256e^-5	0.983	INTRON kibra
2L	10004348	2L_10004348_SNP [dm3] 2L_10004348_SNP [dm6]	G	A	5.299e^-5	0.983	INTRON CG4747 EXON CR44873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11333645	2R_11333645_SNP [dm3] 2R_15446140_SNP [dm6]	G	A	5.367e^-5	0.983	INTRON CG43729
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	5.389e^-5	0.983	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	5.418e^-5	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2R	7837024	2R_7837024_SNP [dm3] 2R_11949519_SNP [dm6]	G	C	5.463e^-5	0.983	INTRON CG13188
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	5.588e^-5	0.983	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8673595	3L_8673595_SNP [dm3] 3L_8680495_SNP [dm6]	C	A	5.604e^-5	0.983	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	10058793	2L_10058793_INS [dm3] 2L_10058793_INS [dm6]	C	CT	5.640e^-5	0.983	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16961315	3L_16961315_SNP [dm3] 3L_16968215_SNP [dm6]	C	G	5.657e^-5	0.983	UTR_3_PRIME Nc73EF DOWNSTREAM Nc73EF
2L	3047770	2L_3047770_SNP [dm3] 2L_3047770_SNP [dm6]	T	C	5.662e^-5	0.983	SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D DOWNSTREAM CR43708	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22087373	3R_22087373_SNP [dm3] 3R_26261651_SNP [dm6]	T	A	5.766e^-5	0.983	UPSTREAM Ald DOWNSTREAM CR44321 INTERGENIC
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	5.807e^-5	0.983	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	3292002	3R_3292002_DEL [dm3] 3R_7466280_DEL [dm6]	AATGGTGGGAA...	A	5.859e^-5	0.983	INTERGENIC
2R	11340675	2R_11340675_INS [dm3] 2R_15453170_INS [dm6]	A	ACA	5.877e^-5	0.983	INTRON CG43729
2L	18141486	2L_18141486_SNP [dm3] 2L_18141486_SNP [dm6]	G	A	5.900e^-5	0.983	INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10058798	2L_10058798_SNP [dm3] 2L_10058798_SNP [dm6]	T	C	5.908e^-5	0.983	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	5.944e^-5	0.983	INTRON CG13917
2L	10073097	2L_10073097_SNP [dm3] 2L_10073097_SNP [dm6]	C	A	5.958e^-5	0.983	INTRON CG44153	TF binding site mE1_TFBS_inv
3R	18189871	3R_18189871_SNP [dm3] 3R_22364149_SNP [dm6]	G	C	6.022e^-5	0.983	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2L	10088520	2L_10088520_SNP [dm3] 2L_10088520_SNP [dm6]	G	A	6.049e^-5	0.983	INTRON CG44153	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4945353	2R_4945353_SNP [dm3] 2R_9057848_SNP [dm6]	G	C	6.051e^-5	0.983	INTRON CG13743
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	6.063e^-5	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	6.063e^-5	0.983	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	6.166e^-5	0.983	INTERGENIC
3L	4685533	3L_4685533_SNP [dm3] 3L_4685533_SNP [dm6]	C	T	6.210e^-5	0.983	INTRON axo
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	6.233e^-5	0.983	INTERGENIC
2R	11325821	2R_11325821_SNP [dm3] 2R_15438316_SNP [dm6]	T	G	6.242e^-5	0.983	INTRON CG43729
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	6.404e^-5	0.989	INTRON CG13917
X	6368890	X_6368890_SNP [dm3] X_6474857_SNP [dm6]	C	T	6.565e^-5	0.989	INTRON CG42340
3L	13040896	3L_13040896_SNP [dm3] 3L_13047796_SNP [dm6]	A	T	6.574e^-5	0.989	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7209661	2L_7209661_SNP [dm3] 2L_7209661_SNP [dm6]	C	A	6.638e^-5	0.989	SPLICE_SITE_REGION CG13784 INTRON CG13784
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	6.718e^-5	0.989	INTERGENIC
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	6.832e^-5	0.989	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	6.836e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17753179	2L_17753179_SNP [dm3] 2L_17753179_SNP [dm6]	C	T	6.839e^-5	0.989	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	13732369	2L_13732369_SNP [dm3] 2L_13732369_SNP [dm6]	T	G	6.853e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_Med
X	14260644	X_14260644_DEL [dm3] X_14366611_DEL [dm6]	CTGAGTTTT	C	6.965e^-5	0.989	INTRON dpr8
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	7.086e^-5	0.989	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
3R	6947020	3R_6947020_SNP [dm3] 3R_11121298_SNP [dm6]	A	C	7.145e^-5	0.989	INTERGENIC
X	4865181	X_4865181_SNP [dm3] X_4971148_SNP [dm6]	A	T	7.323e^-5	0.989	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16559391	X_16559391_SNP [dm3] X_16665358_SNP [dm6]	A	T	7.477e^-5	0.989	UPSTREAM CG15865 INTRON r
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	7.553e^-5	0.989	INTERGENIC
X	12146592	X_12146592_DEL [dm3] X_12252559_DEL [dm6]	GGGAGGGAGCG...	G	7.587e^-5	0.989	INTRON Ten-a
2R	11337069	2R_11337069_SNP [dm3] 2R_15449564_SNP [dm6]	C	T	7.588e^-5	0.989	INTRON CG43729
3L	13040854	3L_13040854_SNP [dm3] 3L_13047754_SNP [dm6]	T	A	7.663e^-5	0.989	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13040856	3L_13040856_SNP [dm3] 3L_13047756_SNP [dm6]	G	T	7.663e^-5	0.989	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11333634	2R_11333634_SNP [dm3] 2R_15446129_SNP [dm6]	C	T	7.700e^-5	0.989	INTRON CG43729
2L	18120395	2L_18120395_SNP [dm3] 2L_18120395_SNP [dm6]	A	G	7.714e^-5	0.989	INTRON CG5758
2R	17945640	2R_17945640_SNP [dm3] 2R_22058135_SNP [dm6]	G	T	7.742e^-5	0.989	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
X	14156606	X_14156606_SNP [dm3] X_14262573_SNP [dm6]	T	C	7.785e^-5	0.989	INTRON CG1461
2L	7398924	2L_7398924_SNP [dm3] 2L_7398924_SNP [dm6]	G	C	7.789e^-5	0.989	UPSTREAM CR44079 & 1 other INTERGENIC
2L	4643969	2L_4643969_SNP [dm3] 2L_4643969_SNP [dm6]	A	T	7.876e^-5	0.989	NON_SYNONYMOUS_CODING CG15635
X	6078471	X_6078471_SNP [dm3] X_6184438_SNP [dm6]	G	A	7.934e^-5	0.989	INTRON Ca-alpha1T
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	7.953e^-5	0.989	INTRON Spn31A
3L	11427526	3L_11427526_SNP [dm3] 3L_11434426_SNP [dm6]	C	A	7.958e^-5	0.989	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	8.014e^-5	0.989	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	8.026e^-5	0.989	INTRON slo
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	8.170e^-5	0.989	INTRON trol
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	8.237e^-5	0.989	INTRON cpo
3L	2827023	3L_2827023_SNP [dm3] 3L_2827023_SNP [dm6]	C	A	8.332e^-5	0.989	INTRON CG43444
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	8.393e^-5	0.989	INTRON Duox
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	8.404e^-5	0.989	INTRON psq
2L	7436184	2L_7436184_SNP [dm3] 2L_7436184_SNP [dm6]	T	A	8.456e^-5	0.989	INTERGENIC
2L	18119425	2L_18119425_SNP [dm3] 2L_18119425_SNP [dm6]	A	G	8.478e^-5	0.989	UPSTREAM CG5758 INTERGENIC
3R	15650994	3R_15650994_SNP [dm3] 3R_19825272_SNP [dm6]	A	C	8.665e^-5	0.989	INTRON bnl
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	8.715e^-5	0.989	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
2R	15986737	2R_15986737_SNP [dm3] 2R_20099232_SNP [dm6]	G	A	8.734e^-5	0.989	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	8.752e^-5	0.989	INTRON FMRFaR
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	8.806e^-5	0.989	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11335891	2R_11335891_DEL [dm3] 2R_15448386_DEL [dm6]	TGGCTAATGGTT...	T	8.879e^-5	0.989	INTRON CG43729
2L	10486804	2L_10486804_SNP [dm3] 2L_10486804_SNP [dm6]	T	C	8.973e^-5	0.989	NON_SYNONYMOUS_CODING CG7456 DOWNSTREAM Grip75	TF binding site mE1_TFBS_inv
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	9.141e^-5	0.989	INTRON bbg
X	2981132	X_2981132_SNP [dm3] X_3087099_SNP [dm6]	C	T	9.302e^-5	0.989	INTRON kirre
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	9.305e^-5	0.989	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	9.312e^-5	0.989	INTRON Sh
2L	1111201	2L_1111201_SNP [dm3] 2L_1111201_SNP [dm6]	C	T	9.335e^-5	0.989	INTRON CG14339
2R	9523837	2R_9523837_SNP [dm3] 2R_13636332_SNP [dm6]	G	A	9.339e^-5	0.989	INTRON fas
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	9.471e^-5	0.989	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	2822075	2L_2822075_SNP [dm3] 2L_2822075_SNP [dm6]	T	A	9.492e^-5	0.989	INTRON Duox
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	9.601e^-5	0.989	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14046639	3R_14046639_SNP [dm3] 3R_18220917_SNP [dm6]	G	T	9.623e^-5	0.989	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	16559389	X_16559389_SNP [dm3] X_16665356_SNP [dm6]	T	C	9.659e^-5	0.989	UPSTREAM CG15865 INTRON r
3R	18189875	3R_18189875_SNP [dm3] 3R_22364153_SNP [dm6]	G	A	9.671e^-5	0.989	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	9.724e^-5	0.989	INTERGENIC	TF binding site mE1_TFBS_cad
X	14258992	X_14258992_SNP [dm3] X_14364959_SNP [dm6]	T	A	9.829e^-5	0.989	INTRON dpr8	TF binding site mE1_TFBS_chinmo
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	9.856e^-5	0.989	INTRON lilli
X	13127264	X_13127264_SNP [dm3] X_13233231_SNP [dm6]	G	A	9.895e^-5	0.989	INTRON mew	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17430384	X_17430384_SNP [dm3] X_17536351_SNP [dm6]	G	A	9.937e^-5	0.989	INTRON CG43658
2L	1598629	2L_1598629_SNP [dm3] 2L_1598629_SNP [dm6]	C	T	1.002e^-4	0.989	INTRON haf & 1 other
X	4585943	X_4585943_SNP [dm3] X_4691910_SNP [dm6]	G	A	1.003e^-4	0.989	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2R	7939818	2R_7939818_SNP [dm3] 2R_12052313_SNP [dm6]	A	G	1.009e^-4	0.989	UPSTREAM CG30039 & 1 other INTERGENIC
3L	7485283	3L_7485283_SNP [dm3] 3L_7492183_SNP [dm6]	C	T	1.009e^-4	0.989	SYNONYMOUS_CODING Cyp316a1
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	1.013e^-4	0.989	INTERGENIC
2R	16790580	2R_16790580_SNP [dm3] 2R_20903075_SNP [dm6]	G	A	1.016e^-4	0.989	UTR_5_PRIME otp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	6078175	X_6078175_SNP [dm3] X_6184142_SNP [dm6]	C	A	1.025e^-4	0.989	INTRON Ca-alpha1T
3R	6530437	3R_6530437_SNP [dm3] 3R_10704715_SNP [dm6]	T	C	1.039e^-4	0.989	NON_SYNONYMOUS_CODING CG31391 DOWNSTREAM CG31467	TF binding site mE1_TFBS_sens
X	2815585	X_2815585_SNP [dm3] X_2921552_SNP [dm6]	G	A	1.042e^-4	0.989	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	1.042e^-4	0.989	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
X	14262237	X_14262237_SNP [dm3] X_14368204_SNP [dm6]	C	T	1.044e^-4	0.989	INTRON dpr8
3L	11348360	3L_11348360_SNP [dm3] 3L_11355260_SNP [dm6]	A	G	1.044e^-4	0.989	INTERGENIC
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	1.050e^-4	0.989	INTRON CG13579
2L	10067202	2L_10067202_SNP [dm3] 2L_10067202_SNP [dm6]	A	G	1.054e^-4	0.989	INTRON CG44153
3R	13263539	3R_13263539_DEL [dm3] 3R_17437817_DEL [dm6]	TT	T	1.056e^-4	0.989	INTRON CG5873
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	1.080e^-4	0.989	INTRON a
2R	11335948	2R_11335948_SNP [dm3] 2R_15448443_SNP [dm6]	C	T	1.086e^-4	0.989	INTRON CG43729
2L	12859181	2L_12859181_DEL [dm3] 2L_12859181_DEL [dm6]	CTTA	C	1.091e^-4	0.989	INTERGENIC
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.096e^-4	0.989	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.096e^-4	0.989	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	8326865	2R_8326865_INS [dm3] 2R_12439360_INS [dm6]	A	ATCTG	1.097e^-4	0.989	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1351349	2L_1351349_SNP [dm3] 2L_1351349_SNP [dm6]	T	A	1.103e^-4	0.989	DOWNSTREAM CG5556 INTERGENIC
X	10014440	X_10014440_SNP [dm3] X_10120407_SNP [dm6]	T	C	1.105e^-4	0.989	INTRON RhoU & 1 other
3R	25617603	3R_25617603_SNP [dm3] 3R_29791881_SNP [dm6]	G	T	1.105e^-4	0.989	SYNONYMOUS_CODING kay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	1.108e^-4	0.989	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	7902125	2R_7902125_SNP [dm3] 2R_12014620_SNP [dm6]	G	T	1.115e^-4	0.989	UPSTREAM CR44306 INTRON otk
3L	24020658	3L_24020658_SNP [dm3] 3L_24027558_SNP [dm6]	C	A	1.120e^-4	0.989	UPSTREAM CG40045 INTERGENIC
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	1.121e^-4	0.989	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16559400	X_16559400_SNP [dm3] X_16665367_SNP [dm6]	A	G	1.123e^-4	0.989	UPSTREAM CG15865 INTRON r
X	16559402	X_16559402_SNP [dm3] X_16665369_SNP [dm6]	A	T	1.123e^-4	0.989	UPSTREAM CG15865 INTRON r
2L	10054425	2L_10054425_SNP [dm3] 2L_10054425_SNP [dm6]	T	A	1.127e^-4	0.989	DOWNSTREAM CR44875 INTRON Cpr31A
2L	18108442	2L_18108442_SNP [dm3] 2L_18108442_SNP [dm6]	G	A	1.127e^-4	0.989	INTERGENIC
3L	11566388	3L_11566388_SNP [dm3] 3L_11573288_SNP [dm6]	G	T	1.129e^-4	0.989	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
X	21836323	X_21836323_DEL [dm3] X_22434488_DEL [dm6]	TT	T	1.129e^-4	0.989	INTERGENIC	transposable element FlyBase
3L	16964262	3L_16964262_SNP [dm3] 3L_16971162_SNP [dm6]	C	A	1.145e^-4	0.996	INTRON Exn
3L	9351670	3L_9351670_SNP [dm3] 3L_9358570_SNP [dm6]	G	C	1.150e^-4	0.996	UPSTREAM UGP & 1 other INTRON UGP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12561964	3L_12561964_SNP [dm3] 3L_12568864_SNP [dm6]	T	C	1.165e^-4	0.996	INTRON sowah	TF binding site mE1_TFBS_cnc
3R	14221089	3R_14221089_SNP [dm3] 3R_18395367_SNP [dm6]	T	A	1.166e^-4	0.996	INTRON Vha100-2
2R	11333386	2R_11333386_SNP [dm3] 2R_15445881_SNP [dm6]	G	C	1.170e^-4	0.996	INTRON CG43729
X	4585945	X_4585945_SNP [dm3] X_4691912_SNP [dm6]	C	T	1.182e^-4	0.996	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	1.184e^-4	0.996	UTR_5_PRIME CG5160
2L	12859178	2L_12859178_SNP [dm3] 2L_12859178_SNP [dm6]	A	T	1.189e^-4	0.996	INTERGENIC
3L	11427485	3L_11427485_SNP [dm3] 3L_11434385_SNP [dm6]	T	C	1.191e^-4	0.996	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	1.199e^-4	0.996	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
2L	7436189	2L_7436189_SNP [dm3] 2L_7436189_SNP [dm6]	G	A	1.225e^-4	0.996	INTERGENIC
2R	11335783	2R_11335783_SNP [dm3] 2R_15448278_SNP [dm6]	G	A	1.232e^-4	0.996	INTRON CG43729
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	1.232e^-4	0.996	INTRON Hnf4 & 1 other
2R	9453385	2R_9453385_SNP [dm3] 2R_13565880_SNP [dm6]	A	C	1.232e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3R	26792926	3R_26792926_SNP [dm3] 3R_30967204_SNP [dm6]	G	C	1.244e^-4	0.996	INTERGENIC
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	1.246e^-4	0.996	SPLICE_SITE_REGION tow INTRON tow
3L	11766632	3L_11766632_SNP [dm3] 3L_11773532_SNP [dm6]	C	A	1.248e^-4	0.996	DOWNSTREAM mir-956 & 2 others INTERGENIC
3L	4685557	3L_4685557_SNP [dm3] 3L_4685557_SNP [dm6]	G	A	1.256e^-4	0.996	INTRON axo
X	13936655	X_13936655_INS [dm3] X_14042622_INS [dm6]	G	GGCGCTAGTTTTTGCG...	1.256e^-4	0.996	INTERGENIC
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	1.264e^-4	0.996	INTERGENIC
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	1.267e^-4	0.996	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	11838561	3R_11838561_INS [dm3] 3R_16012839_INS [dm6]	T	TTTGGGT	1.268e^-4	0.996	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	2379314	X_2379314_SNP [dm3] X_2485281_SNP [dm6]	C	T	1.269e^-4	0.996	INTRON trol
2R	15987820	2R_15987820_SNP [dm3] 2R_20100315_SNP [dm6]	G	C	1.269e^-4	0.996	INTERGENIC
3L	12028228	3L_12028228_SNP [dm3] 3L_12035128_SNP [dm6]	A	G	1.279e^-4	0.996	INTRON rols	TF binding site BDTNP1_TFBS_twi
2L	18116996	2L_18116996_SNP [dm3] 2L_18116996_SNP [dm6]	G	T	1.285e^-4	0.996	INTERGENIC
2L	8973433	2L_8973433_SNP [dm3] 2L_8973433_SNP [dm6]	T	C	1.298e^-4	0.996	SYNONYMOUS_CODING CG9541
2R	11155675	2R_11155675_SNP [dm3] 2R_15268170_SNP [dm6]	G	A	1.304e^-4	0.996	SYNONYMOUS_CODING Trpm
X	15673819	X_15673819_SNP [dm3] X_15779786_SNP [dm6]	T	G	1.317e^-4	0.996	NON_SYNONYMOUS_CODING CG43673 DOWNSTREAM Efhc1.1
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	1.320e^-4	0.996	INTRON unc-13-4A
2L	18107441	2L_18107441_SNP [dm3] 2L_18107441_SNP [dm6]	A	G	1.320e^-4	0.996	INTERGENIC
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	1.327e^-4	0.996	INTRON Ten-a
2L	4891898	2L_4891898_SNP [dm3] 2L_4891898_SNP [dm6]	A	G	1.328e^-4	0.996	UPSTREAM CG3036 & 1 other DOWNSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	1598645	2L_1598645_SNP [dm3] 2L_1598645_SNP [dm6]	C	G	1.331e^-4	0.996	INTRON haf & 1 other
2L	1598680	2L_1598680_SNP [dm3] 2L_1598680_SNP [dm6]	C	A	1.332e^-4	0.996	INTRON haf & 1 other
2L	2501633	2L_2501633_SNP [dm3] 2L_2501633_SNP [dm6]	A	G	1.336e^-4	0.996	INTERGENIC
2L	21775574	2L_21775574_INS [dm3] 2L_21775574_INS [dm6]	A	ATC	1.340e^-4	0.996	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	1.346e^-4	0.996	INTRON trol
2R	11779661	2R_11779661_SNP [dm3] 2R_15892156_SNP [dm6]	A	G	1.346e^-4	0.996	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9642352	2R_9642352_SNP [dm3] 2R_13754847_SNP [dm6]	G	A	1.351e^-4	0.996	INTRON CG6280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	1.358e^-4	0.996	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3R	22174082	3R_22174082_SNP [dm3] 3R_26348360_SNP [dm6]	C	G	1.361e^-4	0.996	INTRON CG33970
3L	11854901	3L_11854901_SNP [dm3] 3L_11861801_SNP [dm6]	C	T	1.370e^-4	0.998	INTRON CG44837
2L	7452226	2L_7452226_SNP [dm3] 2L_7452226_SNP [dm6]	C	T	1.383e^-4	0.998	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2R	17416408	2R_17416408_SNP [dm3] 2R_21528903_SNP [dm6]	C	T	1.388e^-4	0.998	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3883058	2L_3883058_DEL [dm3] 2L_3883058_DEL [dm6]	GAGAAC	A	1.401e^-4	0.998	INTRON capu	TF binding site mE1_TFBS_HSA
2L	599421	2L_599421_SNP [dm3] 2L_599421_SNP [dm6]	T	C	1.406e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	5589426	3L_5589426_SNP [dm3] 3L_5596326_SNP [dm6]	G	A	1.410e^-4	0.998	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10058800	2L_10058800_SNP [dm3] 2L_10058800_SNP [dm6]	G	C	1.419e^-4	0.998	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18645711	X_18645711_SNP [dm3] X_18751678_SNP [dm6]	A	G	1.420e^-4	0.998	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7381549	3L_7381549_SNP [dm3] 3L_7388449_SNP [dm6]	T	C	1.428e^-4	0.998	UPSTREAM CG8564 INTERGENIC
2L	3855081	2L_3855081_SNP [dm3] 2L_3855081_SNP [dm6]	A	T	1.428e^-4	0.998	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10810655	3L_10810655_SNP [dm3] 3L_10817555_SNP [dm6]	T	C	1.434e^-4	0.998	DOWNSTREAM CR45247 INTERGENIC
2L	3382921	2L_3382921_SNP [dm3] 2L_3382921_SNP [dm6]	T	A	1.443e^-4	0.998	INTERGENIC
2L	10061759	2L_10061759_SNP [dm3] 2L_10061759_SNP [dm6]	A	C	1.444e^-4	0.998	INTRON Spn31A
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	1.451e^-4	0.998	INTRON blow	TF binding site mE1_TFBS_chinmo
X	19053682	X_19053682_SNP [dm3] X_19159649_SNP [dm6]	A	G	1.455e^-4	0.998	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	1.457e^-4	0.998	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	21844947	X_21844947_SNP [dm3] X_22443111_SNP [dm6]	G	A	1.476e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21844905	X_21844905_SNP [dm3] X_22443069_SNP [dm6]	G	C	1.481e^-4	0.998	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4991146	3R_4991146_SNP [dm3] 3R_9165424_SNP [dm6]	T	A	1.487e^-4	0.998	INTRON pum
X	13873470	X_13873470_SNP [dm3] X_13979437_SNP [dm6]	C	T	1.494e^-4	0.998	INTRON mamo
2L	10065464	2L_10065464_SNP [dm3] 2L_10065464_SNP [dm6]	C	T	1.501e^-4	0.998	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	10065473	2L_10065473_SNP [dm3] 2L_10065473_SNP [dm6]	T	C	1.501e^-4	0.998	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	7398909	2L_7398909_SNP [dm3] 2L_7398909_SNP [dm6]	G	C	1.504e^-4	0.998	UPSTREAM CR44079 & 1 other INTERGENIC
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	1.522e^-4	0.998	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	21122514	X_21122514_SNP [dm3] X_21251487_SNP [dm6]	A	G	1.523e^-4	0.998	UPSTREAM CG1722 INTRON CG32521
3L	3784077	3L_3784077_SNP [dm3] 3L_3784077_SNP [dm6]	C	G	1.524e^-4	0.998	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	1.529e^-4	0.998	INTRON Ten-a
X	13873455	X_13873455_SNP [dm3] X_13979422_SNP [dm6]	T	G	1.533e^-4	0.998	INTRON mamo
2R	10176346	2R_10176346_SNP [dm3] 2R_14288841_SNP [dm6]	T	C	1.534e^-4	0.998	UPSTREAM Ih INTRON Ih	TF binding site mE1_TFBS_inv
X	4586002	X_4586002_SNP [dm3] X_4691969_SNP [dm6]	T	C	1.534e^-4	0.998	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	6867170	2L_6867170_SNP [dm3] 2L_6867170_SNP [dm6]	C	A	1.537e^-4	0.998	INTRON Nha1
3R	25240868	3R_25240868_INS [dm3] 3R_29415146_INS [dm6]	G	GG	1.543e^-4	0.998	INTRON Ptp99A
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	1.563e^-4	0.998	UPSTREAM jp INTRON jp
2R	3889566	2R_3889566_SNP [dm3] 2R_8002061_SNP [dm6]	G	T	1.565e^-4	0.998	UTR_5_PRIME CG11191	TF binding site mE1_TFBS_chinmo
3L	13241367	3L_13241367_SNP [dm3] 3L_13248267_SNP [dm6]	C	T	1.566e^-4	0.998	SYNONYMOUS_CODING CG32119 INTRON caps
X	10014177	X_10014177_SNP [dm3] X_10120144_SNP [dm6]	G	T	1.566e^-4	0.998	INTRON RhoU & 1 other
2L	8970138	2L_8970138_SNP [dm3] 2L_8970138_SNP [dm6]	A	T	1.569e^-4	0.998	UTR_3_PRIME CG18088 DOWNSTREAM CG9541 & 1 other
2R	14912751	2R_14912751_SNP [dm3] 2R_19025246_SNP [dm6]	G	C	1.573e^-4	0.998	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3829869	3L_3829869_SNP [dm3] 3L_3829869_SNP [dm6]	T	C	1.576e^-4	0.998	SPLICE_SITE_REGION enc INTRON enc
2L	18114611	2L_18114611_SNP [dm3] 2L_18114611_SNP [dm6]	A	C	1.577e^-4	0.998	UTR_5_PRIME CG15152 UPSTREAM CG15152
X	16559438	X_16559438_SNP [dm3] X_16665405_SNP [dm6]	C	G	1.595e^-4	1	UPSTREAM CG15865 INTRON r
2R	10873784	2R_10873784_SNP [dm3] 2R_14986279_SNP [dm6]	G	A	1.601e^-4	1	INTRON pcs	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10010184	2L_10010184_SNP [dm3] 2L_10010184_SNP [dm6]	T	A	1.608e^-4	1	UPSTREAM Trp1 INTRON Trp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6528454	2R_6528454_SNP [dm3] 2R_10640949_SNP [dm6]	C	T	1.612e^-4	1	UTR_3_PRIME CG11883 DOWNSTREAM Git
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	1.612e^-4	1	UPSTREAM CG44476 INTERGENIC
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	1.616e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	1.630e^-4	1	INTRON bbg
3L	17663008	3L_17663008_SNP [dm3] 3L_17669908_SNP [dm6]	A	T	1.645e^-4	1	UPSTREAM Crtc INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	2501631	2L_2501631_SNP [dm3] 2L_2501631_SNP [dm6]	C	T	1.646e^-4	1	INTERGENIC
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	1.650e^-4	1	INTRON kel
3R	14661088	3R_14661088_SNP [dm3] 3R_18835366_SNP [dm6]	T	G	1.658e^-4	1	INTRON CG18208
2R	11342969	2R_11342969_SNP [dm3] 2R_15455464_SNP [dm6]	G	A	1.659e^-4	1	INTRON CG43729
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	1.661e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	22175150	3R_22175150_SNP [dm3] 3R_26349428_SNP [dm6]	T	C	1.664e^-4	1	INTRON CG33970
X	9954599	X_9954599_SNP [dm3] X_10060566_SNP [dm6]	C	T	1.672e^-4	1	SYNONYMOUS_CODING CG15312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13040894	3L_13040894_SNP [dm3] 3L_13047794_SNP [dm6]	C	T	1.673e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15564138	2L_15564138_SNP [dm3] 2L_15564138_SNP [dm6]	C	A	1.682e^-4	1	INTRON kek3
X	16559395	X_16559395_SNP [dm3] X_16665362_SNP [dm6]	C	T	1.685e^-4	1	UPSTREAM CG15865 INTRON r
2L	19232622	2L_19232622_SNP [dm3] 2L_19232622_SNP [dm6]	A	G	1.692e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7939816	2R_7939816_SNP [dm3] 2R_12052311_SNP [dm6]	A	G	1.697e^-4	1	UPSTREAM CG30039 & 1 other INTERGENIC
2R	11348528	2R_11348528_SNP [dm3] 2R_15461023_SNP [dm6]	C	G	1.703e^-4	1	NON_SYNONYMOUS_CODING CG43729 INTRON CG43729
3R	22175149	3R_22175149_SNP [dm3] 3R_26349427_SNP [dm6]	T	A	1.710e^-4	1	INTRON CG33970
X	6503536	X_6503536_SNP [dm3] X_6609503_SNP [dm6]	G	A	1.716e^-4	1	INTRON pigs
X	10017488	X_10017488_SNP [dm3] X_10123455_SNP [dm6]	G	A	1.719e^-4	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
3L	14930722	3L_14930722_SNP [dm3] 3L_14937622_SNP [dm6]	G	A	1.740e^-4	1	INTRON DCX-EMAP
3L	16964282	3L_16964282_SNP [dm3] 3L_16971182_SNP [dm6]	A	C	1.741e^-4	1	INTRON Exn
2R	2410132	2R_2410132_SNP [dm3] 2R_6522627_SNP [dm6]	C	T	1.763e^-4	1	INTRON jing
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	1.775e^-4	1	INTRON Wnt6
2L	6129858	2L_6129858_SNP [dm3] 2L_6129858_SNP [dm6]	G	C	1.778e^-4	1	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15116083	3L_15116083_SNP [dm3] 3L_15122983_SNP [dm6]	G	A	1.780e^-4	1	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
X	11302442	X_11302442_SNP [dm3] X_11408409_SNP [dm6]	C	G	1.787e^-4	1	UTR_3_PRIME dlg1 DOWNSTREAM dlg1
2R	17366933	2R_17366933_SNP [dm3] 2R_21479428_SNP [dm6]	T	A	1.792e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	1.797e^-4	1	INTERGENIC
3R	18988147	3R_18988147_SNP [dm3] 3R_23162425_SNP [dm6]	A	C	1.798e^-4	1	INTERGENIC
2L	18174670	2L_18174670_SNP [dm3] 2L_18174670_SNP [dm6]	T	A	1.800e^-4	1	INTRON CG42750
2R	11351463	2R_11351463_SNP [dm3] 2R_15463958_SNP [dm6]	C	A	1.801e^-4	1	DOWNSTREAM CG43729 INTRON CG43729
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	1.812e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	10256346	2R_10256346_SNP [dm3] 2R_14368841_SNP [dm6]	C	T	1.814e^-4	1	UPSTREAM CG34444 DOWNSTREAM CG34442 INTRON CG34443
2L	12538137	2L_12538137_SNP [dm3] 2L_12538137_SNP [dm6]	A	G	1.820e^-4	1	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
3R	18341500	3R_18341500_SNP [dm3] 3R_22515778_SNP [dm6]	C	A	1.821e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	18123314	2L_18123314_INS [dm3] 2L_18123314_INS [dm6]	T	TT	1.823e^-4	1	DOWNSTREAM CG31785 INTRON CG5758
2L	4198141	2L_4198141_SNP [dm3] 2L_4198141_SNP [dm6]	T	A	1.827e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17004182	3R_17004182_SNP [dm3] 3R_21178460_SNP [dm6]	G	C	1.828e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18032528	2R_18032528_INS [dm3] 2R_22145023_INS [dm6]	G	GG	1.830e^-4	1	INTRON a
3R	15168758	3R_15168758_SNP [dm3] 3R_19343036_SNP [dm6]	G	A	1.836e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	1.836e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	4457097	2L_4457097_SNP [dm3] 2L_4457097_SNP [dm6]	T	C	1.841e^-4	1	UPSTREAM Gs1l DOWNSTREAM RpL27A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11351565	2R_11351565_SNP [dm3] 2R_15464060_SNP [dm6]	T	G	1.857e^-4	1	DOWNSTREAM CG43729 INTRON CG43729
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	1.868e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	1.870e^-4	1	UPSTREAM dnc INTRON dnc
2L	8964887	2L_8964887_SNP [dm3] 2L_8964887_SNP [dm6]	A	G	1.871e^-4	1	UPSTREAM CG32984 DOWNSTREAM CG32985 INTERGENIC
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	1.873e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	5891746	2L_5891746_SNP [dm3] 2L_5891746_SNP [dm6]	T	C	1.875e^-4	1	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	1.876e^-4	1	INTRON CG3009
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	1.876e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16782558	2R_16782558_SNP [dm3] 2R_20895053_SNP [dm6]	G	A	1.882e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_da
X	4288211	X_4288211_SNP [dm3] X_4394178_SNP [dm6]	T	C	1.895e^-4	1	UPSTREAM CR32773 INTRON CR32773
3L	18590294	3L_18590294_SNP [dm3] 3L_18597194_SNP [dm6]	C	T	1.905e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2L	18113782	2L_18113782_SNP [dm3] 2L_18113782_SNP [dm6]	C	T	1.908e^-4	1	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2L	6827467	2L_6827467_SNP [dm3] 2L_6827467_SNP [dm6]	C	A	1.916e^-4	1	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	1.923e^-4	1	INTRON CG7120
3L	8233448	3L_8233448_SNP [dm3] 3L_8240348_SNP [dm6]	T	G	1.928e^-4	1	NON_SYNONYMOUS_CODING CG7213 UPSTREAM Dscam4 INTRON Dscam4
X	12146757	X_12146757_SNP [dm3] X_12252724_SNP [dm6]	G	A	1.949e^-4	1	INTRON Ten-a
3L	5589234	3L_5589234_SNP [dm3] 3L_5596134_SNP [dm6]	A	G	1.960e^-4	1	SYNONYMOUS_CODING CG5150 UPSTREAM CG10592	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7229029	2L_7229029_SNP [dm3] 2L_7229029_SNP [dm6]	C	T	1.964e^-4	1	DOWNSTREAM CG43799 INTRON Ndae1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	1.978e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	20701018	X_20701018_DEL [dm3] X_20829991_DEL [dm6]	TGGGTA	T	1.986e^-4	1	INTRON shakB	TF binding site BDTNP1_TFBS_twi
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.986e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	1.994e^-4	1	DOWNSTREAM CG9173 INTRON Ptp61F
2R	18857977	2R_18857977_SNP [dm3] 2R_22970454_SNP [dm6]	T	C	2.002e^-4	1	INTERGENIC
2R	16782351	2R_16782351_INS [dm3] 2R_20894846_INS [dm6]	T	TGT	2.015e^-4	1	INTRON otp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
2R	13419652	2R_13419652_SNP [dm3] 2R_17532147_SNP [dm6]	T	C	2.017e^-4	1	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3R	4909458	3R_4909458_SNP [dm3] 3R_9083736_SNP [dm6]	C	A	2.029e^-4	1	INTRON pum
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	2.034e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12274014	X_12274014_INS [dm3] X_12379981_INS [dm6]	T	TT	2.034e^-4	1	INTERGENIC
X	21839233	X_21839233_SNP [dm3] X_22437398_SNP [dm6]	C	T	2.036e^-4	1	INTERGENIC
2L	12163227	2L_12163227_INS [dm3] 2L_12163227_INS [dm6]	T	TAAGAAATT	2.040e^-4	1	DOWNSTREAM CG31861 INTRON CG31760
3L	1381259	3L_1381259_SNP [dm3] 3L_1381259_SNP [dm6]	C	A	2.058e^-4	1	DOWNSTREAM tRNA:CR32328 & 1 other INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4394875	2R_4394875_SNP [dm3] 2R_8507370_SNP [dm6]	A	C	2.063e^-4	1	INTRON mtt
3L	14503618	3L_14503618_SNP [dm3] 3L_14510518_SNP [dm6]	C	G	2.064e^-4	1	UPSTREAM bbg INTRON bbg
3L	14503619	3L_14503619_SNP [dm3] 3L_14510519_SNP [dm6]	G	A	2.064e^-4	1	UPSTREAM bbg INTRON bbg
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	2.091e^-4	1	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	2.094e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17753184	2L_17753184_SNP [dm3] 2L_17753184_SNP [dm6]	A	G	2.095e^-4	1	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	12538131	2L_12538131_SNP [dm3] 2L_12538131_SNP [dm6]	C	T	2.104e^-4	1	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
2L	18150399	2L_18150399_SNP [dm3] 2L_18150399_SNP [dm6]	T	G	2.106e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	19234399	2L_19234399_SNP [dm3] 2L_19234399_SNP [dm6]	G	A	2.121e^-4	1	INTERGENIC
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	2.126e^-4	1	NON_SYNONYMOUS_CODING CG32984
2R	8914992	2R_8914992_SNP [dm3] 2R_13027487_SNP [dm6]	T	C	2.134e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9640660	3L_9640660_SNP [dm3] 3L_9647560_SNP [dm6]	G	A	2.134e^-4	1	INTRON fry & 1 other
3L	11759557	3L_11759557_INS [dm3] 3L_11766457_INS [dm6]	C	CAGGGAC	2.138e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	2.153e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	2.164e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	23480649	3R_23480649_SNP [dm3] 3R_27654927_SNP [dm6]	T	G	2.180e^-4	1	INTRON tau
3L	5752965	3L_5752965_SNP [dm3] 3L_5759865_SNP [dm6]	C	T	2.187e^-4	1	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9509069	3L_9509069_SNP [dm3] 3L_9515969_SNP [dm6]	A	C	2.190e^-4	1	INTRON CG33700
X	21845350	X_21845350_SNP [dm3] X_22443514_SNP [dm6]	A	T	2.197e^-4	1	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	11625616	3L_11625616_SNP [dm3] 3L_11632516_SNP [dm6]	T	A	2.198e^-4	1	DOWNSTREAM CR45158 INTRON CG32091
3L	2888164	3L_2888164_SNP [dm3] 3L_2888164_SNP [dm6]	C	G	2.199e^-4	1	INTRON spz5
2L	18115585	2L_18115585_DEL [dm3] 2L_18115585_DEL [dm6]	TAGC	A	2.206e^-4	1	DOWNSTREAM CG15152 INTERGENIC
3L	23765843	3L_23765843_SNP [dm3] 3L_23772743_SNP [dm6]	C	A	2.217e^-4	1	INTERGENIC
2L	1598650	2L_1598650_INS [dm3] 2L_1598650_INS [dm6]	G	TAAA	2.220e^-4	1	INTRON haf & 1 other
2R	18857990	2R_18857990_SNP [dm3] 2R_22970467_SNP [dm6]	T	A	2.228e^-4	1	INTERGENIC
X	10014420	X_10014420_SNP [dm3] X_10120387_SNP [dm6]	G	T	2.231e^-4	1	INTRON RhoU & 1 other
3L	9509075	3L_9509075_SNP [dm3] 3L_9515975_SNP [dm6]	A	T	2.236e^-4	1	INTRON CG33700
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	2.240e^-4	1	INTRON CG6154
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	2.253e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
X	16847456	X_16847456_SNP [dm3] X_16953423_SNP [dm6]	G	A	2.264e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	2.269e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	9640565	3L_9640565_SNP [dm3] 3L_9647465_SNP [dm6]	T	A	2.281e^-4	1	INTRON fry & 1 other
3L	9640568	3L_9640568_SNP [dm3] 3L_9647468_SNP [dm6]	C	A	2.281e^-4	1	INTRON fry & 1 other
3R	25617624	3R_25617624_SNP [dm3] 3R_29791902_SNP [dm6]	C	T	2.283e^-4	1	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	5517607	2L_5517607_SNP [dm3] 2L_5517607_SNP [dm6]	T	G	2.284e^-4	1	UPSTREAM CG14020 INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	12467848	2L_12467848_SNP [dm3] 2L_12467848_SNP [dm6]	C	T	2.285e^-4	1	INTRON bun	TF binding site mE1_TFBS_kn
3R	11574925	3R_11574925_SNP [dm3] 3R_15749203_SNP [dm6]	C	T	2.289e^-4	1	INTERGENIC
2L	10936034	2L_10936034_SNP [dm3] 2L_10936034_SNP [dm6]	C	T	2.289e^-4	1	UPSTREAM CG14072 INTRON dpr2
2L	17753511	2L_17753511_SNP [dm3] 2L_17753511_SNP [dm6]	G	T	2.295e^-4	1	INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14103866	2R_14103866_SNP [dm3] 2R_18216361_SNP [dm6]	A	G	2.296e^-4	1	INTERGENIC
3R	18189892	3R_18189892_SNP [dm3] 3R_22364170_SNP [dm6]	C	T	2.299e^-4	1	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
3R	22065448	3R_22065448_INS [dm3] 3R_26239726_INS [dm6]	T	TT	2.303e^-4	1	INTRON CR42745
3R	8157363	3R_8157363_SNP [dm3] 3R_12331641_SNP [dm6]	T	C	2.306e^-4	1	INTERGENIC
2R	17758385	2R_17758385_SNP [dm3] 2R_21870880_SNP [dm6]	A	C	2.307e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5711002	2L_5711002_SNP [dm3] 2L_5711002_SNP [dm6]	T	A	2.323e^-4	1	UPSTREAM CG7236 INTRON CG7236
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	2.327e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	2.333e^-4	1	INTRON CG43729
3R	9633362	3R_9633362_SNP [dm3] 3R_13807640_SNP [dm6]	A	T	2.339e^-4	1	INTERGENIC
X	2981134	X_2981134_DEL [dm3] X_3087101_DEL [dm6]	CACAC	C	2.345e^-4	1	INTRON kirre
X	13173539	X_13173539_SNP [dm3] X_13279506_SNP [dm6]	T	A	2.350e^-4	1	INTRON HDAC4
3L	14296064	3L_14296064_SNP [dm3] 3L_14302964_SNP [dm6]	C	A	2.365e^-4	1	INTRON fz
2R	16621134	2R_16621134_SNP [dm3] 2R_20733629_SNP [dm6]	A	G	2.370e^-4	1	INTRON dpr
2L	8979803	2L_8979803_INS [dm3] 2L_8979803_INS [dm6]	T	TT	2.373e^-4	1	UPSTREAM CG18662 INTRON CG13101
2L	19234410	2L_19234410_SNP [dm3] 2L_19234410_SNP [dm6]	A	G	2.385e^-4	1	INTERGENIC
3R	27209976	3R_27209976_SNP [dm3] 3R_31384254_SNP [dm6]	A	G	2.387e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	9081385	2R_9081385_SNP [dm3] 2R_13193880_SNP [dm6]	A	G	2.402e^-4	1	INTRON Kdm4B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12028211	3L_12028211_SNP [dm3] 3L_12035111_SNP [dm6]	T	A	2.409e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
2L	5894050	2L_5894050_SNP [dm3] 2L_5894050_SNP [dm6]	A	G	2.410e^-4	1	UPSTREAM Acp26Aa INTERGENIC
X	10399301	X_10399301_INS [dm3] X_10505268_INS [dm6]	T	TAGATTTCAAATCAGT...	2.416e^-4	1	INTRON spri
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	2.422e^-4	1	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17096895	2R_17096895_SNP [dm3] 2R_21209390_SNP [dm6]	T	C	2.428e^-4	1	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
2L	6125762	2L_6125762_SNP [dm3] 2L_6125762_SNP [dm6]	G	A	2.432e^-4	1	DOWNSTREAM WDR79 INTRON Arpc4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	22164112	X_22164112_SNP [dm3] X_22762276_SNP [dm6]	A	C	2.439e^-4	1	INTRON CR44997
2L	1598600	2L_1598600_SNP [dm3] 2L_1598600_SNP [dm6]	A	T	2.444e^-4	1	INTRON haf & 1 other
X	4605191	X_4605191_SNP [dm3] X_4711158_SNP [dm6]	T	A	2.444e^-4	1	INTRON Proc-R
2L	8657343	2L_8657343_SNP [dm3] 2L_8657343_SNP [dm6]	T	C	2.449e^-4	1	INTRON Sema-1a
2L	1790662	2L_1790662_SNP [dm3] 2L_1790662_SNP [dm6]	A	G	2.464e^-4	1	SYNONYMOUS_CODING Gr22c UPSTREAM Gr22d
2R	12761182	2R_12761182_SNP [dm3] 2R_16873677_SNP [dm6]	G	A	2.482e^-4	1	UTR_3_PRIME CG6429 UPSTREAM CG6435 DOWNSTREAM CG6421
2R	12761183	2R_12761183_SNP [dm3] 2R_16873678_SNP [dm6]	T	A	2.482e^-4	1	UTR_3_PRIME CG6429 UPSTREAM CG6435 DOWNSTREAM CG6421
2L	2882693	2L_2882693_SNP [dm3] 2L_2882693_SNP [dm6]	A	G	2.498e^-4	1	SPLICE_SITE_REGION NTPase SYNONYMOUS_CODING NTPase UTR_5_PRIME NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	2.501e^-4	1	INTRON Pkc53E
X	6533066	X_6533066_DEL [dm3] X_6639033_DEL [dm6]	TTT	T	2.501e^-4	1	INTRON pigs
X	3827136	X_3827136_SNP [dm3] X_3933103_SNP [dm6]	T	G	2.502e^-4	1	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	2.507e^-4	1	INTRON CG14521
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	2.535e^-4	1	UPSTREAM CG8997 & 1 other INTRON CenG1A
3R	19340495	3R_19340495_SNP [dm3] 3R_23514773_SNP [dm6]	T	C	2.538e^-4	1	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8455862	3R_8455862_SNP [dm3] 3R_12630140_SNP [dm6]	A	G	2.539e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
3R	21014655	3R_21014655_SNP [dm3] 3R_25188933_SNP [dm6]	G	A	2.550e^-4	1	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9867140	3L_9867140_SNP [dm3] 3L_9874040_SNP [dm6]	G	A	2.553e^-4	1	INTERGENIC
X	17383110	X_17383110_SNP [dm3] X_17489077_SNP [dm6]	C	G	2.556e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	2.562e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	7432173	2L_7432173_SNP [dm3] 2L_7432173_SNP [dm6]	C	A	2.563e^-4	1	INTRON CG5958
2R	3896562	2R_3896562_SNP [dm3] 2R_8009057_SNP [dm6]	C	T	2.569e^-4	1	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
2L	3291290	2L_3291290_DEL [dm3] 2L_3291290_DEL [dm6]	TCTCCCTTACATTTGTTAAG...	T	2.578e^-4	1	UTR_3_PRIME CG9664	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	3029583	3L_3029583_SNP [dm3] 3L_3029583_SNP [dm6]	C	G	2.578e^-4	1	INTERGENIC
2R	2009181	2R_2009181_SNP [dm3] 2R_6121676_SNP [dm6]	T	C	2.585e^-4	1	INTRON EcR	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	2.586e^-4	1	INTRON nkd
X	12385102	X_12385102_SNP [dm3] X_12491069_SNP [dm6]	C	T	2.587e^-4	1	NON_SYNONYMOUS_CODING Lsp1alpha
X	10399304	X_10399304_SNP [dm3] X_10505271_SNP [dm6]	A	T	2.588e^-4	1	INTRON spri
3L	9511632	3L_9511632_SNP [dm3] 3L_9518532_SNP [dm6]	G	T	2.600e^-4	1	INTRON CG33700
2R	17784944	2R_17784944_SNP [dm3] 2R_21897439_SNP [dm6]	T	A	2.601e^-4	1	INTRON Fili
2L	18121710	2L_18121710_SNP [dm3] 2L_18121710_SNP [dm6]	G	T	2.607e^-4	1	UPSTREAM CG5758 INTRON CG5758
2R	7837538	2R_7837538_SNP [dm3] 2R_11950033_SNP [dm6]	C	T	2.607e^-4	1	INTRON CG13188
2L	12692575	2L_12692575_SNP [dm3] 2L_12692575_SNP [dm6]	A	T	2.611e^-4	1	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	2.611e^-4	1	SYNONYMOUS_CODING CG9747
2L	19441539	2L_19441539_SNP [dm3] 2L_19441539_SNP [dm6]	C	T	2.617e^-4	1	UPSTREAM CG10237 & 1 other INTRON CG10237
2L	19442078	2L_19442078_SNP [dm3] 2L_19442078_SNP [dm6]	T	C	2.617e^-4	1	UTR_5_PRIME RanGAP UPSTREAM CG10237 DOWNSTREAM Hs2st INTRON CG10237
3L	5589687	3L_5589687_SNP [dm3] 3L_5596587_SNP [dm6]	G	A	2.620e^-4	1	SYNONYMOUS_CODING CG5150	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19604364	2L_19604364_SNP [dm3] 2L_19604364_SNP [dm6]	T	G	2.625e^-4	1	INTRON Lar & 1 other
2R	17345006	2R_17345006_SNP [dm3] 2R_21457501_SNP [dm6]	G	A	2.625e^-4	1	INTRON Sdc
3L	15703563	3L_15703563_SNP [dm3] 3L_15710463_SNP [dm6]	A	G	2.631e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D
3L	12157677	3L_12157677_SNP [dm3] 3L_12164577_SNP [dm6]	A	G	2.631e^-4	1	UTR_3_PRIME Rh7 UPSTREAM CG9760	TF binding site mE1_TFBS_HSA
X	15182840	X_15182840_SNP [dm3] X_15288807_SNP [dm6]	C	T	2.633e^-4	1	UPSTREAM CR44663 INTERGENIC
X	4484066	X_4484066_INS [dm3] X_4590033_INS [dm6]	A	AAA	2.634e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	1928428	2L_1928428_SNP [dm3] 2L_1928428_SNP [dm6]	C	T	2.643e^-4	1	UTR_5_PRIME CG7337 INTRON CG7337
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	2.649e^-4	1	INTRON Spn31A
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	2.650e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2R	20094722	2R_20094722_SNP [dm3] 2R_24207199_SNP [dm6]	A	T	2.655e^-4	1	UPSTREAM CG11406 INTRON CG11406
3L	14294525	3L_14294525_SNP [dm3] 3L_14301425_SNP [dm6]	G	A	2.673e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	11663799	3L_11663799_DEL [dm3] 3L_11670699_DEL [dm6]	AA	A	2.674e^-4	1	INTRON CG32085
3L	2466422	3L_2466422_SNP [dm3] 3L_2466422_SNP [dm6]	A	G	2.681e^-4	1	UPSTREAM CG45186 DOWNSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5601957	3L_5601957_DEL [dm3] 3L_5608857_DEL [dm6]	CGCCATCATCATCGTCTTTT...	C	2.698e^-4	1	UPSTREAM Eaf6 INTERGENIC	TF binding site mE1_TFBS_Trl
X	4260599	X_4260599_SNP [dm3] X_4366566_SNP [dm6]	T	A	2.702e^-4	1	UTR_5_PRIME CG3626 UPSTREAM mir-982 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	2.708e^-4	1	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	2.711e^-4	1	INTRON trol
2L	3855038	2L_3855038_SNP [dm3] 2L_3855038_SNP [dm6]	A	C	2.715e^-4	1	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	2088787	X_2088787_SNP [dm3] X_2194754_SNP [dm6]	G	A	2.720e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	18645717	X_18645717_SNP [dm3] X_18751684_SNP [dm6]	G	T	2.730e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	2.734e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
3R	24762530	3R_24762530_SNP [dm3] 3R_28936808_SNP [dm6]	A	T	2.735e^-4	1	INTRON CG14521
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	2.740e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	18078882	2L_18078882_SNP [dm3] 2L_18078882_SNP [dm6]	T	C	2.747e^-4	1	INTRON Arr1	TF binding site mE1_TFBS_chinmo
3L	11759438	3L_11759438_SNP [dm3] 3L_11766338_SNP [dm6]	T	G	2.755e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	11759447	3L_11759447_SNP [dm3] 3L_11766347_SNP [dm6]	A	T	2.755e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	8455867	3R_8455867_SNP [dm3] 3R_12630145_SNP [dm6]	T	C	2.756e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
3R	21946932	3R_21946932_SNP [dm3] 3R_26121210_SNP [dm6]	G	A	2.770e^-4	1	INTRON CG31324
X	18645723	X_18645723_SNP [dm3] X_18751690_SNP [dm6]	A	G	2.775e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9172084	2R_9172084_SNP [dm3] 2R_13284579_SNP [dm6]	C	A	2.784e^-4	1	INTRON Dh31-R
3L	11566313	3L_11566313_SNP [dm3] 3L_11573213_SNP [dm6]	G	C	2.796e^-4	1	NON_SYNONYMOUS_CODING CG33490 DOWNSTREAM CG33267
2R	9791388	2R_9791388_SNP [dm3] 2R_13903883_SNP [dm6]	C	T	2.806e^-4	1	SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	13230726	3L_13230726_SNP [dm3] 3L_13237626_SNP [dm6]	A	G	2.807e^-4	1	INTRON caps	TF binding site mE1_TFBS_HSA
3R	22226294	3R_22226294_SNP [dm3] 3R_26400572_SNP [dm6]	T	A	2.820e^-4	1	INTERGENIC
2R	6505686	2R_6505686_SNP [dm3] 2R_10618181_SNP [dm6]	G	A	2.826e^-4	1	DOWNSTREAM psq INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6505688	2R_6505688_SNP [dm3] 2R_10618183_SNP [dm6]	G	T	2.826e^-4	1	DOWNSTREAM psq INTRON CG11883	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7266785	3L_7266785_SNP [dm3] 3L_7273685_SNP [dm6]	T	C	2.830e^-4	1	INTRON unc-13-4A	TF binding site mE1_TFBS_cad
2L	902040	2L_902040_SNP [dm3] 2L_902040_SNP [dm6]	T	A	2.845e^-4	1	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	2.848e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19441822	2L_19441822_DEL [dm3] 2L_19441822_DEL [dm6]	TT	T	2.850e^-4	1	UPSTREAM CG10237 & 1 other INTRON CG10237
3R	7807078	3R_7807078_SNP [dm3] 3R_11981356_SNP [dm6]	A	C	2.857e^-4	1	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4052955	2L_4052955_SNP [dm3] 2L_4052955_SNP [dm6]	A	G	2.859e^-4	1	INTRON ed	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	2.861e^-4	1	UPSTREAM para INTERGENIC
3L	6151988	3L_6151988_SNP [dm3] 3L_6158888_SNP [dm6]	T	C	2.861e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
3R	26008485	3R_26008485_SNP [dm3] 3R_30182763_SNP [dm6]	T	A	2.872e^-4	1	INTERGENIC
3R	21819115	3R_21819115_SNP [dm3] 3R_25993393_SNP [dm6]	C	A	2.872e^-4	1	SYNONYMOUS_CODING Nf1
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	2.872e^-4	1	UPSTREAM CG33225 INTERGENIC
2L	10058810	2L_10058810_SNP [dm3] 2L_10058810_SNP [dm6]	G	T	2.881e^-4	1	INTRON Pen	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12761283	2R_12761283_SNP [dm3] 2R_16873778_SNP [dm6]	G	T	2.884e^-4	1	START_GAINED CG6435 UTR_5_PRIME CG6435 DOWNSTREAM CG6421 & 2 others
2L	9831026	2L_9831026_DEL [dm3] 2L_9831026_DEL [dm6]	AA	A	2.888e^-4	1	INTRON nAChRalpha6
3L	9510276	3L_9510276_DEL [dm3] 3L_9517176_DEL [dm6]	TT	T	2.891e^-4	1	INTRON CG33700
2L	8087849	2L_8087849_SNP [dm3] 2L_8087849_SNP [dm6]	A	G	2.892e^-4	1	UPSTREAM Bsg INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	2.900e^-4	1	INTERGENIC
3L	11766616	3L_11766616_SNP [dm3] 3L_11773516_SNP [dm6]	A	T	2.905e^-4	1	DOWNSTREAM mir-956 & 2 others INTERGENIC
3R	20517412	3R_20517412_SNP [dm3] 3R_24691690_SNP [dm6]	T	A	2.907e^-4	1	INTRON slo
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	2.914e^-4	1	INTERGENIC
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	2.920e^-4	1	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3383508	3R_3383508_SNP [dm3] 3R_7557786_SNP [dm6]	C	T	2.920e^-4	1	INTERGENIC
3R	25990574	3R_25990574_SNP [dm3] 3R_30164852_SNP [dm6]	C	T	2.927e^-4	1	UTR_3_PRIME CG31030
3L	6151959	3L_6151959_SNP [dm3] 3L_6158859_SNP [dm6]	T	G	2.929e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
2L	18159458	2L_18159458_SNP [dm3] 2L_18159458_SNP [dm6]	C	G	2.932e^-4	1	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	2.938e^-4	1	INTRON dnt	TF binding site mE1_TFBS_cad
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	2.955e^-4	1	UPSTREAM CG1722 INTRON CG32521
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	2.957e^-4	1	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	8455833	3R_8455833_SNP [dm3] 3R_12630111_SNP [dm6]	C	A	2.968e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3	TF binding site BDTNP1_TFBS_dl
3L	20269033	3L_20269033_SNP [dm3] 3L_20275933_SNP [dm6]	G	A	2.969e^-4	1	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	16844977	X_16844977_SNP [dm3] X_16950944_SNP [dm6]	T	C	2.969e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	2.975e^-4	1	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
2R	16326340	2R_16326340_SNP [dm3] 2R_20438835_SNP [dm6]	G	A	2.976e^-4	1	INTRON CG12484
2L	18108479	2L_18108479_SNP [dm3] 2L_18108479_SNP [dm6]	A	T	2.977e^-4	1	INTERGENIC
3R	20517370	3R_20517370_DEL [dm3] 3R_24691648_DEL [dm6]	TATAACATAACA...	T	2.982e^-4	1	INTRON slo
2L	4213164	2L_4213164_SNP [dm3] 2L_4213164_SNP [dm6]	T	C	2.986e^-4	1	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12132295	2R_12132295_SNP [dm3] 2R_16244790_SNP [dm6]	G	A	2.988e^-4	1	SYNONYMOUS_CODING CngA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	18887422	2R_18887422_SNP [dm3] 2R_22999899_SNP [dm6]	G	C	2.988e^-4	1	INTRON twi
2L	20946034	2L_20946034_INS [dm3] 2L_20946034_INS [dm6]	T	TTCAAGAGT	2.997e^-4	1	INTERGENIC
X	15182845	X_15182845_SNP [dm3] X_15288812_SNP [dm6]	T	C	2.997e^-4	1	UPSTREAM CR44663 INTERGENIC
2L	20946038	2L_20946038_DEL [dm3] 2L_20946038_DEL [dm6]	GTTCTTCTGGGGCATTAGGA...	G	3.011e^-4	1	INTERGENIC
2R	16791841	2R_16791841_SNP [dm3] 2R_20904336_SNP [dm6]	T	G	3.020e^-4	1	UPSTREAM otp INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5672501	X_5672501_SNP [dm3] X_5778468_SNP [dm6]	G	T	3.027e^-4	1	INTRON CG42699 & 1 other
3R	4420793	3R_4420793_SNP [dm3] 3R_8595071_SNP [dm6]	T	A	3.046e^-4	1	INTRON 5-HT2B
3L	16955852	3L_16955852_SNP [dm3] 3L_16962752_SNP [dm6]	A	G	3.049e^-4	1	SYNONYMOUS_CODING Nc73EF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14419056	3L_14419056_DEL [dm3] 3L_14425956_DEL [dm6]	TTTCGT	T	3.052e^-4	1	INTRON bbg	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	6484376	X_6484376_SNP [dm3] X_6590343_SNP [dm6]	A	G	3.055e^-4	1	SYNONYMOUS_CODING CG17717 UPSTREAM Pat1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	486752	2L_486752_SNP [dm3] 2L_486752_SNP [dm6]	G	A	3.068e^-4	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	6867134	2L_6867134_SNP [dm3] 2L_6867134_SNP [dm6]	G	C	3.069e^-4	1	INTRON Nha1
X	5708854	X_5708854_SNP [dm3] X_5814821_SNP [dm6]	A	G	3.076e^-4	1	DOWNSTREAM CG15766 INTERGENIC
3L	14761089	3L_14761089_SNP [dm3] 3L_14767989_SNP [dm6]	T	G	3.083e^-4	1	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
3R	12079727	3R_12079727_SNP [dm3] 3R_16254005_SNP [dm6]	T	G	3.083e^-4	1	INTRON tara	TF binding site BDTNP1_TFBS_twi
2L	19289931	2L_19289931_SNP [dm3] 2L_19289931_SNP [dm6]	T	A	3.084e^-4	1	INTERGENIC
3R	6946534	3R_6946534_SNP [dm3] 3R_11120812_SNP [dm6]	G	C	3.093e^-4	1	INTERGENIC
2L	15418892	2L_15418892_SNP [dm3] 2L_15418892_SNP [dm6]	A	T	3.096e^-4	1	UPSTREAM CG44869 INTERGENIC	TF binding site mE1_TFBS_HSA
X	16929734	X_16929734_SNP [dm3] X_17035701_SNP [dm6]	C	T	3.102e^-4	1	INTRON CG45002
2L	1122033	2L_1122033_SNP [dm3] 2L_1122033_SNP [dm6]	A	C	3.106e^-4	1	INTRON Pino
3L	12072545	3L_12072545_SNP [dm3] 3L_12079445_SNP [dm6]	G	A	3.107e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18114502	2L_18114502_SNP [dm3] 2L_18114502_SNP [dm6]	T	C	3.110e^-4	1	UPSTREAM CG15152 INTERGENIC
2R	9013009	2R_9013009_SNP [dm3] 2R_13125504_SNP [dm6]	C	T	3.114e^-4	1	INTRON CG13325
2R	17789469	2R_17789469_SNP [dm3] 2R_21901964_SNP [dm6]	A	T	3.122e^-4	1	INTRON Fili
X	18645726	X_18645726_SNP [dm3] X_18751693_SNP [dm6]	T	C	3.123e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	3.132e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	3.148e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14443894	3R_14443894_SNP [dm3] 3R_18618172_SNP [dm6]	C	A	3.149e^-4	1	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_sbb
3R	24444938	3R_24444938_SNP [dm3] 3R_28619216_SNP [dm6]	C	T	3.152e^-4	1	INTRON CG10011
3L	903992	3L_903992_SNP [dm3] 3L_903992_SNP [dm6]	C	G	3.152e^-4	1	DOWNSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	3.161e^-4	1	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
X	3851360	X_3851360_SNP [dm3] X_3957327_SNP [dm6]	T	C	3.162e^-4	1	SYNONYMOUS_CODING lva	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12028367	3L_12028367_SNP [dm3] 3L_12035267_SNP [dm6]	C	T	3.163e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
X	2779891	X_2779891_SNP [dm3] X_2885858_SNP [dm6]	A	G	3.165e^-4	1	NON_SYNONYMOUS_CODING CG14419 INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10068211	2L_10068211_SNP [dm3] 2L_10068211_SNP [dm6]	A	C	3.169e^-4	1	INTRON CG44153
2L	10003460	2L_10003460_SNP [dm3] 2L_10003460_SNP [dm6]	A	T	3.177e^-4	1	UPSTREAM SoYb & 2 others DOWNSTREAM CR44873 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Kr
2L	9831024	2L_9831024_SNP [dm3] 2L_9831024_SNP [dm6]	T	G	3.178e^-4	1	INTRON nAChRalpha6
2L	18985622	2L_18985622_SNP [dm3] 2L_18985622_SNP [dm6]	A	C	3.181e^-4	1	INTRON Swip-1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4427049	2L_4427049_SNP [dm3] 2L_4427049_SNP [dm6]	A	G	3.187e^-4	1	INTRON CG15431
2L	7768317	2L_7768317_SNP [dm3] 2L_7768317_SNP [dm6]	A	C	3.187e^-4	1	INTRON CG7191
3R	19832042	3R_19832042_DEL [dm3] 3R_24006320_DEL [dm6]	TT	T	3.191e^-4	1	INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9960163	2L_9960163_SNP [dm3] 2L_9960163_SNP [dm6]	G	T	3.194e^-4	1	UTR_3_PRIME CG5850 & 1 other UPSTREAM CR43683 DOWNSTREAM CG4658 & 1 other EXON CR44872
2R	12191859	2R_12191859_SNP [dm3] 2R_16304354_SNP [dm6]	G	A	3.195e^-4	1	EXON CR45232
3L	8879569	3L_8879569_SNP [dm3] 3L_8886469_SNP [dm6]	A	G	3.196e^-4	1	INTRON dally
X	4605192	X_4605192_SNP [dm3] X_4711159_SNP [dm6]	G	T	3.202e^-4	1	INTRON Proc-R
2R	7410569	2R_7410569_SNP [dm3] 2R_11523064_SNP [dm6]	C	A	3.202e^-4	1	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	13040891	3L_13040891_SNP [dm3] 3L_13047791_SNP [dm6]	G	C	3.211e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17933377	3L_17933377_SNP [dm3] 3L_17940277_SNP [dm6]	G	A	3.214e^-4	1	INTRON CG43174
2L	3854056	2L_3854056_SNP [dm3] 2L_3854056_SNP [dm6]	G	A	3.218e^-4	1	DOWNSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12163211	2L_12163211_INS [dm3] 2L_12163211_INS [dm6]	T	TTT	3.223e^-4	1	DOWNSTREAM CG31861 INTRON CG31760
2R	15986279	2R_15986279_SNP [dm3] 2R_20098774_SNP [dm6]	C	G	3.227e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12874125	2L_12874125_SNP [dm3] 2L_12874125_SNP [dm6]	C	A	3.232e^-4	1	INTERGENIC
2R	19957072	2R_19957072_SNP [dm3] 2R_24069549_SNP [dm6]	C	T	3.236e^-4	1	INTRON CG3209	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Kr mE1_TFBS_sens
X	13873530	X_13873530_SNP [dm3] X_13979497_SNP [dm6]	T	C	3.241e^-4	1	INTRON mamo
2R	15029918	2R_15029918_SNP [dm3] 2R_19142413_SNP [dm6]	T	A	3.243e^-4	1	INTRON ena	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	3558323	3L_3558323_SNP [dm3] 3L_3558323_SNP [dm6]	A	T	3.243e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	20320327	2R_20320327_SNP [dm3] 2R_24432804_SNP [dm6]	T	A	3.245e^-4	1	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	26793758	3R_26793758_SNP [dm3] 3R_30968036_SNP [dm6]	T	C	3.246e^-4	1	DOWNSTREAM 5-HT7 INTERGENIC
3R	8455877	3R_8455877_INS [dm3] 3R_12630155_INS [dm6]	T	TA	3.255e^-4	1	UTR_3_PRIME Snx3 UPSTREAM Not10 DOWNSTREAM Snx3
3L	14121729	3L_14121729_SNP [dm3] 3L_14128629_SNP [dm6]	C	T	3.263e^-4	1	INTRON Sox21b
2L	1965096	2L_1965096_SNP [dm3] 2L_1965096_SNP [dm6]	C	T	3.270e^-4	1	UPSTREAM tRNA:CR31942 INTRON erm	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18645729	X_18645729_SNP [dm3] X_18751696_SNP [dm6]	T	A	3.270e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	3.273e^-4	1	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
3R	23919794	3R_23919794_SNP [dm3] 3R_28094072_SNP [dm6]	A	C	3.277e^-4	1	INTERGENIC
3L	23934155	3L_23934155_SNP [dm3] 3L_23941055_SNP [dm6]	G	T	3.278e^-4	1	INTRON CG40470
2L	18120437	2L_18120437_SNP [dm3] 2L_18120437_SNP [dm6]	A	T	3.281e^-4	1	INTRON CG5758
3L	9088315	3L_9088315_SNP [dm3] 3L_9095215_SNP [dm6]	A	G	3.285e^-4	1	DOWNSTREAM CG32032 INTERGENIC
3L	11524541	3L_11524541_SNP [dm3] 3L_11531441_SNP [dm6]	C	T	3.299e^-4	1	INTRON Mob2
3R	13492332	3R_13492332_SNP [dm3] 3R_17666610_SNP [dm6]	T	G	3.306e^-4	1	UPSTREAM CR45045 INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19054164	X_19054164_SNP [dm3] X_19160131_SNP [dm6]	C	T	3.314e^-4	1	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	22003134	2L_22003134_SNP [dm3] 2L_22003134_SNP [dm6]	G	A	3.316e^-4	1	INTERGENIC	transposable element FlyBase
X	9066658	X_9066658_SNP [dm3] X_9172625_SNP [dm6]	A	G	3.317e^-4	1	UTR_3_PRIME mei-P26 DOWNSTREAM mei-P26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7027702	3R_7027702_SNP [dm3] 3R_11201980_SNP [dm6]	T	C	3.320e^-4	1	INTRON cu
2R	3896561	2R_3896561_SNP [dm3] 2R_8009056_SNP [dm6]	T	A	3.321e^-4	1	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
2L	8707580	2L_8707580_SNP [dm3] 2L_8707580_SNP [dm6]	T	A	3.340e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
2L	18107420	2L_18107420_SNP [dm3] 2L_18107420_SNP [dm6]	G	T	3.346e^-4	1	INTERGENIC
3R	16047165	3R_16047165_SNP [dm3] 3R_20221443_SNP [dm6]	C	G	3.347e^-4	1	INTRON Nlg4
2R	11155749	2R_11155749_SNP [dm3] 2R_15268244_SNP [dm6]	T	C	3.350e^-4	1	INTRON Trpm
3L	10810658	3L_10810658_SNP [dm3] 3L_10817558_SNP [dm6]	G	A	3.360e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3L	7105140	3L_7105140_INS [dm3] 3L_7112040_INS [dm6]	A	AA	3.371e^-4	1	INTRON form3
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	3.379e^-4	1	INTRON CG32206
3L	12750501	3L_12750501_SNP [dm3] 3L_12757401_SNP [dm6]	G	A	3.382e^-4	1	NON_SYNONYMOUS_CODING CG32113
3L	13198710	3L_13198710_SNP [dm3] 3L_13205610_SNP [dm6]	T	A	3.387e^-4	1	INTERGENIC
2L	4689627	2L_4689627_SNP [dm3] 2L_4689627_SNP [dm6]	A	G	3.393e^-4	1	SYNONYMOUS_CODING CG3251 DOWNSTREAM Elba3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10256294	2R_10256294_SNP [dm3] 2R_14368789_SNP [dm6]	C	T	3.414e^-4	1	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
3L	9705247	3L_9705247_SNP [dm3] 3L_9712147_SNP [dm6]	T	C	3.437e^-4	1	SYNONYMOUS_CODING SH3PX1	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	3.451e^-4	1	INTRON Ncc69
2L	11411831	2L_11411831_SNP [dm3] 2L_11411831_SNP [dm6]	G	C	3.475e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	18353309	3L_18353309_SNP [dm3] 3L_18360209_SNP [dm6]	T	G	3.476e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	12477370	2L_12477370_SNP [dm3] 2L_12477370_SNP [dm6]	A	C	3.486e^-4	1	INTRON bun
3L	5982507	3L_5982507_SNP [dm3] 3L_5989407_SNP [dm6]	G	T	3.495e^-4	1	INTERGENIC
3L	10261195	3L_10261195_SNP [dm3] 3L_10268095_SNP [dm6]	A	T	3.496e^-4	1	UPSTREAM can INTERGENIC	regulatory region REDfly_CRMs
2L	10545173	2L_10545173_SNP [dm3] 2L_10545173_SNP [dm6]	T	A	3.497e^-4	1	UTR_5_PRIME Trim9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14121702	3L_14121702_SNP [dm3] 3L_14128602_SNP [dm6]	T	C	3.514e^-4	1	INTRON Sox21b
2L	18078855	2L_18078855_SNP [dm3] 2L_18078855_SNP [dm6]	C	A	3.517e^-4	1	INTRON Arr1	TF binding site mE1_TFBS_chinmo
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	3.523e^-4	1	INTRON CG3009
2R	10736149	2R_10736149_SNP [dm3] 2R_14848644_SNP [dm6]	A	C	3.524e^-4	1	UTR_3_PRIME SMC2 UPSTREAM CG10209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4891727	2L_4891727_SNP [dm3] 2L_4891727_SNP [dm6]	G	A	3.530e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10534968	3R_10534968_SNP [dm3] 3R_14709246_SNP [dm6]	C	A	3.531e^-4	1	INTRON kibra
2L	2704947	2L_2704947_SNP [dm3] 2L_2704947_SNP [dm6]	C	G	3.544e^-4	1	NON_SYNONYMOUS_CODING CG31690	TF binding site BDTNP1_TFBS_twi
2L	7768306	2L_7768306_SNP [dm3] 2L_7768306_SNP [dm6]	G	T	3.563e^-4	1	INTRON CG7191
3L	2956506	3L_2956506_SNP [dm3] 3L_2956506_SNP [dm6]	G	C	3.576e^-4	1	INTRON Shab	TF binding site mE1_TFBS_chinmo
3R	8830472	3R_8830472_SNP [dm3] 3R_13004750_SNP [dm6]	A	G	3.579e^-4	1	SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3117419	2L_3117419_SNP [dm3] 2L_3117419_SNP [dm6]	G	T	3.592e^-4	1	INTRON toc
3R	4423569	3R_4423569_SNP [dm3] 3R_8597847_SNP [dm6]	T	A	3.614e^-4	1	INTRON 5-HT2B
2L	10052663	2L_10052663_SNP [dm3] 2L_10052663_SNP [dm6]	A	T	3.620e^-4	1	UPSTREAM CR44875 DOWNSTREAM CR44874 INTERGENIC
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	3.630e^-4	1	INTERGENIC
2L	18972604	2L_18972604_SNP [dm3] 2L_18972604_SNP [dm6]	G	A	3.632e^-4	1	SPLICE_SITE_REGION CG10639 SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
2L	18972610	2L_18972610_SNP [dm3] 2L_18972610_SNP [dm6]	T	C	3.632e^-4	1	SYNONYMOUS_CODING CG10639 DOWNSTREAM Tango6	TF binding site mE1_TFBS_cad
3L	9901343	3L_9901343_SNP [dm3] 3L_9908243_SNP [dm6]	G	A	3.635e^-4	1	INTRON CG34356
3L	8743216	3L_8743216_SNP [dm3] 3L_8750116_SNP [dm6]	C	A	3.635e^-4	1	UPSTREAM CG13306 INTERGENIC
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	3.636e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	21099496	3R_21099496_SNP [dm3] 3R_25273774_SNP [dm6]	A	C	3.651e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	6525267	3R_6525267_SNP [dm3] 3R_10699545_SNP [dm6]	C	T	3.654e^-4	1	UPSTREAM pug DOWNSTREAM CG14683 INTRON pug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	11759566	3L_11759566_INS [dm3] 3L_11766466_INS [dm6]	C	CA	3.655e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	25092137	3R_25092137_SNP [dm3] 3R_29266415_SNP [dm6]	T	C	3.668e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	3.680e^-4	1	INTRON nAChRalpha6
X	8735244	X_8735244_SNP [dm3] X_8841211_SNP [dm6]	T	G	3.681e^-4	1	INTRON CG12075
2L	4291786	2L_4291786_SNP [dm3] 2L_4291786_SNP [dm6]	A	C	3.692e^-4	1	INTRON tutl
2L	10288766	2L_10288766_SNP [dm3] 2L_10288766_SNP [dm6]	A	C	3.697e^-4	1	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
2R	11340718	2R_11340718_SNP [dm3] 2R_15453213_SNP [dm6]	A	C	3.698e^-4	1	INTRON CG43729
2R	4395559	2R_4395559_SNP [dm3] 2R_8508054_SNP [dm6]	C	A	3.701e^-4	1	INTRON mtt
2L	12692474	2L_12692474_SNP [dm3] 2L_12692474_SNP [dm6]	T	C	3.710e^-4	1	UPSTREAM CG6153 INTRON CG5525	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	9854407	3L_9854407_SNP [dm3] 3L_9861307_SNP [dm6]	A	T	3.718e^-4	1	SYNONYMOUS_CODING iPLA2-VIA
2R	16555886	2R_16555886_SNP [dm3] 2R_20668381_SNP [dm6]	T	A	3.736e^-4	1	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	12846468	2L_12846468_SNP [dm3] 2L_12846468_SNP [dm6]	A	T	3.739e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12761173	2R_12761173_SNP [dm3] 2R_16873668_SNP [dm6]	G	A	3.742e^-4	1	UTR_3_PRIME CG6429 UPSTREAM CG6435 DOWNSTREAM CG6421
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	3.755e^-4	1	INTRON stan
2L	3765598	2L_3765598_SNP [dm3] 2L_3765598_SNP [dm6]	T	C	3.760e^-4	1	UPSTREAM CG43707 INTRON CG43707 & 1 other
2L	18120494	2L_18120494_SNP [dm3] 2L_18120494_SNP [dm6]	G	A	3.770e^-4	1	INTRON CG5758
3L	6151958	3L_6151958_SNP [dm3] 3L_6158858_SNP [dm6]	A	C	3.772e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
2R	15987709	2R_15987709_SNP [dm3] 2R_20100204_SNP [dm6]	T	A	3.776e^-4	1	INTERGENIC
2R	17769699	2R_17769699_SNP [dm3] 2R_21882194_SNP [dm6]	G	C	3.783e^-4	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16555888	2R_16555888_DEL [dm3] 2R_20668383_DEL [dm6]	ATAAAACCTTTTACATTTAG...	A	3.789e^-4	1	UTR_3_PRIME exu INTRON exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	16047181	3R_16047181_SNP [dm3] 3R_20221459_SNP [dm6]	G	T	3.790e^-4	1	INTRON Nlg4
2R	1312975	2R_1312975_SNP [dm3] 2R_5425470_SNP [dm6]	A	C	3.793e^-4	1	INTRON laccase2	transposable element FlyBase
2L	7074793	2L_7074793_SNP [dm3] 2L_7074793_SNP [dm6]	A	G	3.796e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17785404	2R_17785404_SNP [dm3] 2R_21897899_SNP [dm6]	C	T	3.799e^-4	1	INTRON Fili
3L	13198725	3L_13198725_INS [dm3] 3L_13205625_INS [dm6]	A	ATATTA	3.800e^-4	1	INTERGENIC
3L	14329504	3L_14329504_SNP [dm3] 3L_14336404_SNP [dm6]	G	A	3.801e^-4	1	INTRON fz
2L	2841038	2L_2841038_SNP [dm3] 2L_2841038_SNP [dm6]	A	G	3.802e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
3R	22065395	3R_22065395_SNP [dm3] 3R_26239673_SNP [dm6]	G	A	3.806e^-4	1	INTRON CR42745
2L	5686453	2L_5686453_SNP [dm3] 2L_5686453_SNP [dm6]	T	C	3.806e^-4	1	INTERGENIC
2L	5686446	2L_5686446_SNP [dm3] 2L_5686446_SNP [dm6]	C	A	3.808e^-4	1	INTERGENIC
3R	24762692	3R_24762692_SNP [dm3] 3R_28936970_SNP [dm6]	C	T	3.809e^-4	1	INTRON CG14521
2R	7414162	2R_7414162_SNP [dm3] 2R_11526657_SNP [dm6]	A	G	3.815e^-4	1	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	6790331	X_6790331_SNP [dm3] X_6896298_SNP [dm6]	C	T	3.817e^-4	1	INTERGENIC
3L	2804614	3L_2804614_SNP [dm3] 3L_2804614_SNP [dm6]	C	T	3.819e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	13198606	3L_13198606_SNP [dm3] 3L_13205506_SNP [dm6]	A	G	3.821e^-4	1	INTERGENIC
3L	13198624	3L_13198624_SNP [dm3] 3L_13205524_SNP [dm6]	A	C	3.821e^-4	1	INTERGENIC
3L	6152023	3L_6152023_SNP [dm3] 3L_6158923_SNP [dm6]	A	T	3.826e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
2R	7918080	2R_7918080_SNP [dm3] 2R_12030575_SNP [dm6]	C	A	3.828e^-4	1	SYNONYMOUS_CODING pds5	TF binding site mE1_TFBS_HSA
3R	3900934	3R_3900934_SNP [dm3] 3R_8075212_SNP [dm6]	C	T	3.828e^-4	1	UPSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3L	9855279	3L_9855279_SNP [dm3] 3L_9862179_SNP [dm6]	G	T	3.828e^-4	1	NON_SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	3.834e^-4	1	UPSTREAM dnc INTRON dnc
2L	18972596	2L_18972596_SNP [dm3] 2L_18972596_SNP [dm6]	A	G	3.845e^-4	1	SPLICE_SITE_REGION CG10639 DOWNSTREAM Tango6 INTRON CG10639	TF binding site mE1_TFBS_cad
2L	5138295	2L_5138295_SNP [dm3] 2L_5138295_SNP [dm6]	C	T	3.853e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	7655307	3L_7655307_SNP [dm3] 3L_7662207_SNP [dm6]	C	T	3.854e^-4	1	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_sens
2L	13832476	2L_13832476_SNP [dm3] 2L_13832476_SNP [dm6]	G	A	3.870e^-4	1	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	3559739	3L_3559739_SNP [dm3] 3L_3559739_SNP [dm6]	A	G	3.872e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2R	15985334	2R_15985334_SNP [dm3] 2R_20097829_SNP [dm6]	T	C	3.879e^-4	1	INTERGENIC
3L	17461019	3L_17461019_SNP [dm3] 3L_17467919_SNP [dm6]	G	A	3.880e^-4	1	INTERGENIC
X	21831443	X_21831443_SNP [dm3] X_22429608_SNP [dm6]	A	G	3.885e^-4	1	INTERGENIC	transposable element FlyBase
X	16163210	X_16163210_SNP [dm3] X_16269177_SNP [dm6]	G	A	3.887e^-4	1	SYNONYMOUS_CODING kat80
3L	5986307	3L_5986307_SNP [dm3] 3L_5993207_SNP [dm6]	A	C	3.891e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18844566	3L_18844566_SNP [dm3] 3L_18851466_SNP [dm6]	C	T	3.903e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	3.905e^-4	1	INTERGENIC
2L	2841011	2L_2841011_SNP [dm3] 2L_2841011_SNP [dm6]	G	C	3.915e^-4	1	SYNONYMOUS_CODING CG2975 UPSTREAM CR45342
3L	4306390	3L_4306390_SNP [dm3] 3L_4306390_SNP [dm6]	A	T	3.925e^-4	1	INTRON dyl
3L	1589050	3L_1589050_SNP [dm3] 3L_1589050_SNP [dm6]	C	A	3.930e^-4	1	INTRON CG13917
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	3.933e^-4	1	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	21122546	X_21122546_SNP [dm3] X_21251519_SNP [dm6]	T	A	3.935e^-4	1	UPSTREAM CG1722 INTRON CG32521
3R	20844486	3R_20844486_SNP [dm3] 3R_25018764_SNP [dm6]	G	A	3.937e^-4	1	NON_SYNONYMOUS_CODING tnc
2L	12859179	2L_12859179_SNP [dm3] 2L_12859179_SNP [dm6]	A	G	3.939e^-4	1	INTERGENIC
2L	8767452	2L_8767452_SNP [dm3] 2L_8767452_SNP [dm6]	G	A	3.946e^-4	1	SYNONYMOUS_CODING CG9463
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.946e^-4	1	INTRON CG43729
3R	16134519	3R_16134519_SNP [dm3] 3R_20308797_SNP [dm6]	C	T	3.950e^-4	1	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	15985361	2R_15985361_SNP [dm3] 2R_20097856_SNP [dm6]	G	A	3.974e^-4	1	INTERGENIC
X	5221846	X_5221846_SNP [dm3] X_5327813_SNP [dm6]	A	G	3.987e^-4	1	SYNONYMOUS_CODING CG3309	TF binding site mE1_TFBS_chinmo
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	3.992e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12590420	3L_12590420_SNP [dm3] 3L_12597320_SNP [dm6]	T	A	4.006e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
2L	5137894	2L_5137894_SNP [dm3] 2L_5137894_SNP [dm6]	T	C	4.007e^-4	1	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	18121830	2L_18121830_DEL [dm3] 2L_18121830_DEL [dm6]	ATAA	A	4.009e^-4	1	UPSTREAM CG5758 INTRON CG5758
X	14155154	X_14155154_SNP [dm3] X_14261121_SNP [dm6]	T	G	4.011e^-4	1	UPSTREAM CG1461 INTERGENIC
2R	15987695	2R_15987695_SNP [dm3] 2R_20100190_SNP [dm6]	C	T	4.018e^-4	1	INTERGENIC
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	4.067e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25468633	3R_25468633_SNP [dm3] 3R_29642911_SNP [dm6]	G	A	4.068e^-4	1	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	20948453	3R_20948453_SNP [dm3] 3R_25122731_SNP [dm6]	G	A	4.079e^-4	1	UTR_5_PRIME CG31108 & 1 other UPSTREAM vig2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3R	22091445	3R_22091445_SNP [dm3] 3R_26265723_SNP [dm6]	C	A	4.095e^-4	1	INTRON CG6154
2L	8972903	2L_8972903_SNP [dm3] 2L_8972903_SNP [dm6]	G	T	4.116e^-4	1	INTRON CG9541
2R	6458734	2R_6458734_SNP [dm3] 2R_10571229_SNP [dm6]	A	T	4.118e^-4	1	INTRON psq	TF binding site mE1_TFBS_HSA
3R	18988124	3R_18988124_SNP [dm3] 3R_23162402_SNP [dm6]	T	A	4.126e^-4	1	INTERGENIC
3L	14331642	3L_14331642_INS [dm3] 3L_14338542_INS [dm6]	C	CGCACAGCC	4.126e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5686444	2L_5686444_SNP [dm3] 2L_5686444_SNP [dm6]	C	T	4.130e^-4	1	INTERGENIC
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	4.137e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	4.137e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	27231677	3R_27231677_SNP [dm3] 3R_31405955_SNP [dm6]	A	G	4.149e^-4	1	SPLICE_SITE_REGION Gprk2 UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	11348354	3L_11348354_SNP [dm3] 3L_11355254_SNP [dm6]	C	G	4.162e^-4	1	INTERGENIC
3L	14428794	3L_14428794_SNP [dm3] 3L_14435694_SNP [dm6]	C	A	4.167e^-4	1	INTRON bbg
3L	14428796	3L_14428796_INS [dm3] 3L_14435696_INS [dm6]	T	AG	4.167e^-4	1	INTRON bbg
3R	26754871	3R_26754871_SNP [dm3] 3R_30929149_SNP [dm6]	T	C	4.178e^-4	1	SYNONYMOUS_CODING Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17086994	2R_17086994_SNP [dm3] 2R_21199489_SNP [dm6]	T	C	4.181e^-4	1	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	4.187e^-4	1	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	4.204e^-4	1	INTRON hdc
2R	16274530	2R_16274530_SNP [dm3] 2R_20387025_SNP [dm6]	C	T	4.213e^-4	1	INTERGENIC
3L	7277882	3L_7277882_SNP [dm3] 3L_7284782_SNP [dm6]	A	G	4.213e^-4	1	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14022197	3L_14022197_SNP [dm3] 3L_14029097_SNP [dm6]	G	A	4.224e^-4	1	UTR_5_PRIME ptip DOWNSTREAM endos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	7485024	3L_7485024_SNP [dm3] 3L_7491924_SNP [dm6]	G	A	4.241e^-4	1	NON_SYNONYMOUS_CODING Cyp316a1
3R	20524608	3R_20524608_SNP [dm3] 3R_24698886_SNP [dm6]	T	C	4.264e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
2L	18113290	2L_18113290_SNP [dm3] 2L_18113290_SNP [dm6]	C	T	4.265e^-4	1	UPSTREAM CG44476 INTERGENIC
2L	18113291	2L_18113291_SNP [dm3] 2L_18113291_SNP [dm6]	A	T	4.265e^-4	1	UPSTREAM CG44476 INTERGENIC
2L	4891709	2L_4891709_SNP [dm3] 2L_4891709_SNP [dm6]	G	A	4.267e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	4.273e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18169120	2L_18169120_SNP [dm3] 2L_18169120_SNP [dm6]	A	C	4.274e^-4	1	INTRON CG42750	TF binding site mE1_TFBS_inv
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	4.280e^-4	1	UPSTREAM para INTERGENIC
2R	3693060	2R_3693060_SNP [dm3] 2R_7805555_SNP [dm6]	T	G	4.285e^-4	1	UTR_5_PRIME Nop17l UPSTREAM sax INTRON Nop17l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	11328433	2R_11328433_SNP [dm3] 2R_15440928_SNP [dm6]	G	A	4.286e^-4	1	INTRON CG43729
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	4.289e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12835585	2L_12835585_SNP [dm3] 2L_12835585_SNP [dm6]	G	C	4.302e^-4	1	INTERGENIC
3L	2804644	3L_2804644_SNP [dm3] 3L_2804644_SNP [dm6]	T	C	4.304e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	12846442	2L_12846442_SNP [dm3] 2L_12846442_SNP [dm6]	C	A	4.305e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	10267822	2L_10267822_SNP [dm3] 2L_10267822_SNP [dm6]	T	C	4.307e^-4	1	SYNONYMOUS_CODING CG4953
X	11291774	X_11291774_DEL [dm3] X_11397741_DEL [dm6]	TAAT	T	4.308e^-4	1	INTRON dlg1	TF binding site BDTNP1_TFBS_dl
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	4.308e^-4	1	INTRON Eip63E
X	21845742	X_21845742_SNP [dm3] X_22443906_SNP [dm6]	A	T	4.314e^-4	1	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx mE1_TFBS_zfh1
2L	9561278	2L_9561278_SNP [dm3] 2L_9561278_SNP [dm6]	C	T	4.319e^-4	1	UPSTREAM jp INTRON jp
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	4.321e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1025131	2L_1025131_SNP [dm3] 2L_1025131_SNP [dm6]	C	T	4.322e^-4	1	DOWNSTREAM CG4375 INTRON IA-2
3L	6152004	3L_6152004_SNP [dm3] 3L_6158904_SNP [dm6]	G	T	4.324e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
3L	13040867	3L_13040867_SNP [dm3] 3L_13047767_SNP [dm6]	C	T	4.327e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1598601	2L_1598601_SNP [dm3] 2L_1598601_SNP [dm6]	A	G	4.343e^-4	1	INTRON haf & 1 other
3R	15168638	3R_15168638_SNP [dm3] 3R_19342916_SNP [dm6]	T	A	4.344e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	4.352e^-4	1	INTERGENIC
3L	17589916	3L_17589916_SNP [dm3] 3L_17596816_SNP [dm6]	C	T	4.359e^-4	1	INTRON Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	18590288	3L_18590288_SNP [dm3] 3L_18597188_SNP [dm6]	G	A	4.367e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2R	9092961	2R_9092961_SNP [dm3] 2R_13205456_SNP [dm6]	C	A	4.375e^-4	1	UPSTREAM lat INTRON lat & 1 other	TF binding site BDTNP1_TFBS_dl
2L	11368632	2L_11368632_SNP [dm3] 2L_11368632_SNP [dm6]	A	T	4.381e^-4	1	SYNONYMOUS_CODING salr	TF binding site mE1_TFBS_cad
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	4.387e^-4	1	INTRON Pkc53E
3L	5251481	3L_5251481_SNP [dm3] 3L_5258381_SNP [dm6]	A	G	4.392e^-4	1	INTRON shep
3L	18589881	3L_18589881_SNP [dm3] 3L_18596781_SNP [dm6]	C	T	4.429e^-4	1	EXON CR45389
2R	11338512	2R_11338512_SNP [dm3] 2R_15451007_SNP [dm6]	G	T	4.432e^-4	1	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22087551	3R_22087551_SNP [dm3] 3R_26261829_SNP [dm6]	A	G	4.449e^-4	1	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
2R	7929380	2R_7929380_SNP [dm3] 2R_12041875_SNP [dm6]	G	A	4.451e^-4	1	SYNONYMOUS_CODING RpIII128
3R	20524605	3R_20524605_SNP [dm3] 3R_24698883_SNP [dm6]	A	G	4.461e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
3R	3346247	3R_3346247_SNP [dm3] 3R_7520525_SNP [dm6]	C	T	4.466e^-4	1	SYNONYMOUS_CODING alpha-Est7	TF binding site mE1_TFBS_cad
2L	1598587	2L_1598587_SNP [dm3] 2L_1598587_SNP [dm6]	T	G	4.473e^-4	1	INTRON haf & 1 other
3L	2804728	3L_2804728_SNP [dm3] 3L_2804728_SNP [dm6]	C	A	4.489e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	16116755	X_16116755_SNP [dm3] X_16222722_SNP [dm6]	T	A	4.498e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	10126712	2L_10126712_SNP [dm3] 2L_10126712_SNP [dm6]	C	T	4.499e^-4	1	DOWNSTREAM CG34109 INTRON CG44153
3L	23255363	3L_23255363_SNP [dm3] 3L_23262263_SNP [dm6]	T	A	4.523e^-4	1	INTRON nAChRalpha4
3R	14661124	3R_14661124_SNP [dm3] 3R_18835402_SNP [dm6]	T	C	4.527e^-4	1	INTRON CG18208
3L	12027623	3L_12027623_SNP [dm3] 3L_12034523_SNP [dm6]	G	T	4.548e^-4	1	INTRON rols
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	4.556e^-4	1	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	3048640	2L_3048640_SNP [dm3] 2L_3048640_SNP [dm6]	G	A	4.562e^-4	1	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	10549665	2L_10549665_SNP [dm3] 2L_10549665_SNP [dm6]	T	A	4.565e^-4	1	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	6129868	2L_6129868_SNP [dm3] 2L_6129868_SNP [dm6]	G	A	4.567e^-4	1	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	4.568e^-4	1	UPSTREAM para INTERGENIC
2R	8452930	2R_8452930_SNP [dm3] 2R_12565425_SNP [dm6]	G	C	4.572e^-4	1	UPSTREAM CG33775 & 1 other INTERGENIC
3L	6151965	3L_6151965_SNP [dm3] 3L_6158865_SNP [dm6]	G	T	4.576e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
2R	17969920	2R_17969920_SNP [dm3] 2R_22082415_SNP [dm6]	T	C	4.581e^-4	1	SYNONYMOUS_CODING Synj	TF binding site mE1_TFBS_cad
3R	7807066	3R_7807066_SNP [dm3] 3R_11981344_SNP [dm6]	G	A	4.584e^-4	1	SYNONYMOUS_CODING CG12224 UPSTREAM CG18547	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20524591	3R_20524591_SNP [dm3] 3R_24698869_SNP [dm6]	C	T	4.585e^-4	1	INTRON slo	TF binding site BDTNP1_TFBS_dl
3L	22008056	3L_22008056_SNP [dm3] 3L_22014956_SNP [dm6]	G	T	4.586e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15197949	2R_15197949_DEL [dm3] 2R_19310444_DEL [dm6]	TT	T	4.598e^-4	1	DOWNSTREAM Rgk1 INTRON EndoB	TF binding site mE1_TFBS_sens
2L	19365731	2L_19365731_SNP [dm3] 2L_19365731_SNP [dm6]	A	G	4.607e^-4	1	DOWNSTREAM CG13086 INTERGENIC
2L	21912065	2L_21912065_SNP [dm3] 2L_21912065_SNP [dm6]	C	T	4.617e^-4	1	INTERGENIC	transposable element FlyBase
2R	15914255	2R_15914255_SNP [dm3] 2R_20026750_SNP [dm6]	C	T	4.618e^-4	1	INTERGENIC
3L	11766718	3L_11766718_SNP [dm3] 3L_11773618_SNP [dm6]	A	G	4.625e^-4	1	DOWNSTREAM mir-956 & 2 others INTERGENIC
2L	12846461	2L_12846461_SNP [dm3] 2L_12846461_SNP [dm6]	A	T	4.634e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	23882029	3R_23882029_DEL [dm3] 3R_28056307_DEL [dm6]	TA	T	4.639e^-4	1	INTRON CG34362
2L	7275096	2L_7275096_SNP [dm3] 2L_7275096_SNP [dm6]	C	G	4.648e^-4	1	INTRON Wnt4	TF binding site BDTNP1_TFBS_da
3R	7806687	3R_7806687_SNP [dm3] 3R_11980965_SNP [dm6]	A	G	4.654e^-4	1	UPSTREAM CG18547 INTRON CG12224	TF binding site mE1_TFBS_Trl
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	4.660e^-4	1	INTRON CG34362
X	10399343	X_10399343_SNP [dm3] X_10505310_SNP [dm6]	T	C	4.663e^-4	1	INTRON spri
2L	16633942	2L_16633942_SNP [dm3] 2L_16633942_SNP [dm6]	C	T	4.668e^-4	1	INTRON CG42389
X	18645733	X_18645733_SNP [dm3] X_18751700_SNP [dm6]	C	A	4.668e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4128751	X_4128751_SNP [dm3] X_4234718_SNP [dm6]	C	A	4.675e^-4	1	INTERGENIC
3L	9679873	3L_9679873_SNP [dm3] 3L_9686773_SNP [dm6]	T	A	4.677e^-4	1	DOWNSTREAM CG16719 INTRON CG6767
3R	15665958	3R_15665958_SNP [dm3] 3R_19840236_SNP [dm6]	G	A	4.685e^-4	1	UPSTREAM CG31459 INTERGENIC
2R	16792011	2R_16792011_SNP [dm3] 2R_20904506_SNP [dm6]	A	T	4.686e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26639252	3R_26639252_SNP [dm3] 3R_30813530_SNP [dm6]	G	A	4.693e^-4	1	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	6463109	3L_6463109_SNP [dm3] 3L_6470009_SNP [dm6]	A	G	4.694e^-4	1	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4685558	3L_4685558_SNP [dm3] 3L_4685558_SNP [dm6]	C	A	4.698e^-4	1	INTRON axo
2R	14499147	2R_14499147_SNP [dm3] 2R_18611642_SNP [dm6]	C	T	4.701e^-4	1	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4891830	2L_4891830_DEL [dm3] 2L_4891830_DEL [dm6]	AA	A	4.706e^-4	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8218424	3R_8218424_SNP [dm3] 3R_12392702_SNP [dm6]	A	G	4.706e^-4	1	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 INTRON CG34402 & 1 other	TF binding site mE1_TFBS_cad
2L	1787163	2L_1787163_SNP [dm3] 2L_1787163_SNP [dm6]	G	C	4.707e^-4	1	INTERGENIC
3L	16963541	3L_16963541_SNP [dm3] 3L_16970441_SNP [dm6]	G	A	4.710e^-4	1	UTR_5_PRIME Exn
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	4.713e^-4	1	INTRON CG7120
3R	8894635	3R_8894635_SNP [dm3] 3R_13068913_SNP [dm6]	A	G	4.725e^-4	1	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12556090	2L_12556090_SNP [dm3] 2L_12556090_SNP [dm6]	T	C	4.734e^-4	1	INTERGENIC
2R	6993126	2R_6993126_SNP [dm3] 2R_11105621_SNP [dm6]	G	C	4.737e^-4	1	INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	15116107	3L_15116107_SNP [dm3] 3L_15123007_SNP [dm6]	G	A	4.759e^-4	1	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
3R	17004153	3R_17004153_INS [dm3] 3R_21178431_INS [dm6]	T	TT	4.760e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6553247	2L_6553247_SNP [dm3] 2L_6553247_SNP [dm6]	G	A	4.761e^-4	1	DOWNSTREAM CR44776 INTERGENIC
3R	21945895	3R_21945895_SNP [dm3] 3R_26120173_SNP [dm6]	T	G	4.778e^-4	1	INTRON CG31324
3R	27209881	3R_27209881_SNP [dm3] 3R_31384159_SNP [dm6]	C	T	4.778e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
3R	15169853	3R_15169853_SNP [dm3] 3R_19344131_SNP [dm6]	G	T	4.782e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	13295168	2L_13295168_SNP [dm3] 2L_13295168_SNP [dm6]	C	G	4.784e^-4	1	UPSTREAM CG31729 INTRON CG31729
2L	15884936	2L_15884936_SNP [dm3] 2L_15884936_SNP [dm6]	T	G	4.794e^-4	1	INTERGENIC
2R	18032521	2R_18032521_SNP [dm3] 2R_22145016_SNP [dm6]	C	A	4.800e^-4	1	INTRON a
2L	16634381	2L_16634381_SNP [dm3] 2L_16634381_SNP [dm6]	A	G	4.803e^-4	1	INTRON CG42389
2R	16621768	2R_16621768_SNP [dm3] 2R_20734263_SNP [dm6]	T	C	4.814e^-4	1	INTRON dpr
X	17911850	X_17911850_SNP [dm3] X_18017817_SNP [dm6]	A	G	4.819e^-4	1	INTRON Sh
3R	20435089	3R_20435089_DEL [dm3] 3R_24609367_DEL [dm6]	ATGTA	A	4.820e^-4	1	INTRON mld
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	4.822e^-4	1	INTRON FMRFaR
X	4587465	X_4587465_SNP [dm3] X_4693432_SNP [dm6]	T	C	4.823e^-4	1	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7902023	2R_7902023_SNP [dm3] 2R_12014518_SNP [dm6]	T	A	4.825e^-4	1	UPSTREAM CR44306 INTRON otk
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	4.826e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3048492	2L_3048492_SNP [dm3] 2L_3048492_SNP [dm6]	G	A	4.839e^-4	1	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	9965747	2L_9965747_SNP [dm3] 2L_9965747_SNP [dm6]	C	T	4.845e^-4	1	INTRON Dref
2L	6866863	2L_6866863_SNP [dm3] 2L_6866863_SNP [dm6]	C	G	4.857e^-4	1	INTRON Nha1
2R	7813342	2R_7813342_SNP [dm3] 2R_11925837_SNP [dm6]	C	T	4.866e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	10399345	X_10399345_SNP [dm3] X_10505312_SNP [dm6]	G	T	4.874e^-4	1	INTRON spri
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	4.876e^-4	1	UTR_3_PRIME dpr3
X	4411912	X_4411912_SNP [dm3] X_4517879_SNP [dm6]	C	T	4.879e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE
2L	16147473	2L_16147473_SNP [dm3] 2L_16147473_SNP [dm6]	C	T	4.888e^-4	1	INTERGENIC
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	4.898e^-4	1	INTRON CAP
3R	14608265	3R_14608265_SNP [dm3] 3R_18782543_SNP [dm6]	T	G	4.903e^-4	1	INTRON CG7720
X	16847578	X_16847578_SNP [dm3] X_16953545_SNP [dm6]	T	C	4.913e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6940595	3R_6940595_SNP [dm3] 3R_11114873_SNP [dm6]	A	T	4.915e^-4	1	SYNONYMOUS_CODING CG6629
3L	11412367	3L_11412367_SNP [dm3] 3L_11419267_SNP [dm6]	T	G	4.915e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11412379	3L_11412379_SNP [dm3] 3L_11419279_SNP [dm6]	G	A	4.915e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17004194	3R_17004194_SNP [dm3] 3R_21178472_SNP [dm6]	A	G	4.916e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11338518	2R_11338518_SNP [dm3] 2R_15451013_SNP [dm6]	C	A	4.919e^-4	1	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3366140	3R_3366140_SNP [dm3] 3R_7540418_SNP [dm6]	G	A	4.924e^-4	1	SYNONYMOUS_CODING alpha-Est3 UTR_3_PRIME alpha-Est3
3L	5429977	3L_5429977_SNP [dm3] 3L_5436877_SNP [dm6]	T	G	4.929e^-4	1	INTRON CG34391
2L	12846438	2L_12846438_SNP [dm3] 2L_12846438_SNP [dm6]	T	A	4.933e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18645720	X_18645720_SNP [dm3] X_18751687_SNP [dm6]	A	G	4.936e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26001227	3R_26001227_SNP [dm3] 3R_30175505_SNP [dm6]	G	A	4.943e^-4	1	UPSTREAM Mlc2 DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
3L	10372043	3L_10372043_INS [dm3] 3L_10378943_INS [dm6]	A	AGTAA	4.967e^-4	1	INTERGENIC
2R	16126046	2R_16126046_SNP [dm3] 2R_20238541_SNP [dm6]	C	T	4.969e^-4	1	UTR_3_PRIME CG11099 & 1 other
X	17028037	X_17028037_SNP [dm3] X_17134004_SNP [dm6]	A	T	4.971e^-4	1	INTRON CG5004
2L	12571249	2L_12571249_SNP [dm3] 2L_12571249_SNP [dm6]	C	T	4.975e^-4	1	UPSTREAM CR44598 EXON CR44597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13685428	X_13685428_SNP [dm3] X_13791395_SNP [dm6]	A	T	4.975e^-4	1	UPSTREAM CG10993 INTRON inaE
2R	17469435	2R_17469435_SNP [dm3] 2R_21581930_SNP [dm6]	C	G	4.977e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21999446	2L_21999446_SNP [dm3] 2L_21999446_SNP [dm6]	G	A	4.982e^-4	1	DOWNSTREAM CR44916 INTERGENIC	transposable element FlyBase
2L	2899377	2L_2899377_SNP [dm3] 2L_2899377_SNP [dm6]	C	A	4.985e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	3458375	3R_3458375_SNP [dm3] 3R_7632653_SNP [dm6]	T	G	5.011e^-4	1	INTRON CG34127
2R	15914103	2R_15914103_SNP [dm3] 2R_20026598_SNP [dm6]	A	T	5.019e^-4	1	INTERGENIC
3L	24002365	3L_24002365_SNP [dm3] 3L_24009265_SNP [dm6]	T	A	5.021e^-4	1	DOWNSTREAM CR40053 INTERGENIC
2R	17145109	2R_17145109_SNP [dm3] 2R_21257604_SNP [dm6]	C	A	5.022e^-4	1	UTR_5_PRIME Rgk3 INTRON Rgk3
2R	11348742	2R_11348742_SNP [dm3] 2R_15461237_SNP [dm6]	C	A	5.034e^-4	1	INTRON CG43729	TF binding site mE1_TFBS_HSA
2R	17784989	2R_17784989_SNP [dm3] 2R_21897484_SNP [dm6]	T	A	5.036e^-4	1	INTRON Fili
2L	7398225	2L_7398225_SNP [dm3] 2L_7398225_SNP [dm6]	T	A	5.045e^-4	1	INTRON CG5160
2R	9032598	2R_9032598_SNP [dm3] 2R_13145093_SNP [dm6]	T	C	5.056e^-4	1	UTR_3_PRIME Ack-like INTRON Ack-like
2R	17771405	2R_17771405_SNP [dm3] 2R_21883900_SNP [dm6]	T	C	5.064e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	5.072e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3470385	3L_3470385_SNP [dm3] 3L_3470385_SNP [dm6]	T	C	5.078e^-4	1	SPLICE_SITE_REGION CG14971 INTRON CG14971
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	5.082e^-4	1	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3L	14016472	3L_14016472_SNP [dm3] 3L_14023372_SNP [dm6]	T	C	5.088e^-4	1	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo
2L	1113957	2L_1113957_INS [dm3] 2L_1113957_INS [dm6]	C	TTCTCCCTAAGATACTTACC...	5.100e^-4	1	UTR_3_PRIME CG14340 DOWNSTREAM Pino
3R	7802006	3R_7802006_SNP [dm3] 3R_11976284_SNP [dm6]	T	G	5.103e^-4	1	SYNONYMOUS_CODING CG10005	TF binding site mE1_TFBS_sens
2L	21909561	2L_21909561_DEL [dm3] 2L_21909561_DEL [dm6]	ATC	A	5.112e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	5.114e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17753204	2L_17753204_SNP [dm3] 2L_17753204_SNP [dm6]	G	A	5.118e^-4	1	UPSTREAM CadN INTRON CadN	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	11109297	3L_11109297_SNP [dm3] 3L_11116197_SNP [dm6]	G	T	5.126e^-4	1	SYNONYMOUS_CODING fd68A
X	10398719	X_10398719_SNP [dm3] X_10504686_SNP [dm6]	A	T	5.131e^-4	1	INTRON spri
2L	7450249	2L_7450249_SNP [dm3] 2L_7450249_SNP [dm6]	A	G	5.142e^-4	1	UTR_5_PRIME santa-maria INTRON santa-maria
3R	17978728	3R_17978728_SNP [dm3] 3R_22153006_SNP [dm6]	T	G	5.149e^-4	1	INTRON SKIP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu
2L	17116482	2L_17116482_INS [dm3] 2L_17116482_INS [dm6]	T	TATAGAT	5.153e^-4	1	INTERGENIC
3L	9854401	3L_9854401_SNP [dm3] 3L_9861301_SNP [dm6]	T	C	5.154e^-4	1	SYNONYMOUS_CODING iPLA2-VIA
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	5.154e^-4	1	INTRON CG44153
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	5.161e^-4	1	INTRON FMRFaR
X	4530158	X_4530158_SNP [dm3] X_4636125_SNP [dm6]	A	C	5.163e^-4	1	UPSTREAM pon & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5986085	2L_5986085_INS [dm3] 2L_5986085_INS [dm6]	G	GCAAGTCTACAT...	5.164e^-4	1	UPSTREAM ifc DOWNSTREAM eIF-4a INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb
3R	2516245	3R_2516245_SNP [dm3] 3R_6690523_SNP [dm6]	G	C	5.168e^-4	1	UPSTREAM Ccp84Af DOWNSTREAM Ccp84Ae INTERGENIC
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	5.196e^-4	1	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26090208	3R_26090208_SNP [dm3] 3R_30264486_SNP [dm6]	G	A	5.200e^-4	1	INTERGENIC
3R	24709199	3R_24709199_INS [dm3] 3R_28883477_INS [dm6]	G	GG	5.207e^-4	1	UPSTREAM CG14526 DOWNSTREAM CG14527 INTRON CG33203
3R	15968569	3R_15968569_SNP [dm3] 3R_20142847_SNP [dm6]	C	T	5.211e^-4	1	INTERGENIC
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	5.220e^-4	1	NON_SYNONYMOUS_CODING mbc
2L	1092808	2L_1092808_SNP [dm3] 2L_1092808_SNP [dm6]	T	A	5.224e^-4	1	INTRON CG4629
3L	9856174	3L_9856174_SNP [dm3] 3L_9863074_SNP [dm6]	A	G	5.225e^-4	1	SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
3R	25993276	3R_25993276_SNP [dm3] 3R_30167554_SNP [dm6]	G	T	5.228e^-4	1	INTRON CG31028
X	14155398	X_14155398_SNP [dm3] X_14261365_SNP [dm6]	C	T	5.254e^-4	1	START_GAINED CG1461 UTR_5_PRIME CG1461
2L	18988367	2L_18988367_SNP [dm3] 2L_18988367_SNP [dm6]	A	G	5.258e^-4	1	NON_SYNONYMOUS_CODING CG15170 DOWNSTREAM CG15168	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5885556	2L_5885556_SNP [dm3] 2L_5885556_SNP [dm6]	T	C	5.273e^-4	1	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
2R	20322304	2R_20322304_SNP [dm3] 2R_24434781_SNP [dm6]	A	C	5.273e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12949526	3R_12949526_SNP [dm3] 3R_17123804_SNP [dm6]	T	C	5.277e^-4	1	UPSTREAM CG45079 INTRON cher
2L	8716564	2L_8716564_SNP [dm3] 2L_8716564_SNP [dm6]	T	C	5.279e^-4	1	INTRON raw
3L	20844872	3L_20844872_SNP [dm3] 3L_20851772_SNP [dm6]	G	A	5.287e^-4	1	INTRON CG32432
3L	888379	3L_888379_SNP [dm3] 3L_888379_SNP [dm6]	T	G	5.300e^-4	1	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	3048367	2L_3048367_SNP [dm3] 2L_3048367_SNP [dm6]	G	C	5.329e^-4	1	NON_SYNONYMOUS_CODING v_2_k05816 UPSTREAM snRNA:U5:23D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3048463	2L_3048463_SNP [dm3] 2L_3048463_SNP [dm6]	C	T	5.329e^-4	1	UPSTREAM snRNA:U5:23D INTRON v_2_k05816	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	5.331e^-4	1	INTRON CG34377
2R	1504828	2R_1504828_SNP [dm3] 2R_5617323_SNP [dm6]	C	G	5.337e^-4	1	INTERGENIC
3L	12028250	3L_12028250_SNP [dm3] 3L_12035150_SNP [dm6]	T	A	5.343e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
2L	10119597	2L_10119597_SNP [dm3] 2L_10119597_SNP [dm6]	C	T	5.346e^-4	1	INTRON CG44153 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	17687082	3L_17687082_SNP [dm3] 3L_17693982_SNP [dm6]	C	A	5.348e^-4	1	INTRON Ccn
2L	8767419	2L_8767419_SNP [dm3] 2L_8767419_SNP [dm6]	A	G	5.348e^-4	1	SYNONYMOUS_CODING CG9463
3R	8218422	3R_8218422_SNP [dm3] 3R_12392700_SNP [dm6]	A	G	5.353e^-4	1	UTR_5_PRIME CG10096 UTR_3_PRIME CG10097 INTRON CG34402 & 1 other	TF binding site mE1_TFBS_cad
3R	19828346	3R_19828346_SNP [dm3] 3R_24002624_SNP [dm6]	G	T	5.361e^-4	1	INTRON KrT95D
2L	7399009	2L_7399009_SNP [dm3] 2L_7399009_SNP [dm6]	C	T	5.365e^-4	1	UPSTREAM CR44079 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4678286	2L_4678286_SNP [dm3] 2L_4678286_SNP [dm6]	C	T	5.365e^-4	1	INTERGENIC
3L	12751016	3L_12751016_SNP [dm3] 3L_12757916_SNP [dm6]	G	T	5.371e^-4	1	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
X	15546949	X_15546949_SNP [dm3] X_15652916_SNP [dm6]	G	T	5.391e^-4	1	INTERGENIC
3L	5982580	3L_5982580_SNP [dm3] 3L_5989480_SNP [dm6]	T	A	5.405e^-4	1	INTERGENIC
2L	18169117	2L_18169117_SNP [dm3] 2L_18169117_SNP [dm6]	A	T	5.409e^-4	1	INTRON CG42750	TF binding site mE1_TFBS_inv
3L	3539779	3L_3539779_SNP [dm3] 3L_3539779_SNP [dm6]	C	T	5.410e^-4	1	INTRON Eip63E
X	8418424	X_8418424_SNP [dm3] X_8524391_SNP [dm6]	T	G	5.426e^-4	1	DOWNSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	13936986	X_13936986_SNP [dm3] X_14042953_SNP [dm6]	C	T	5.432e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8606344	3L_8606344_DEL [dm3] 3L_8613244_DEL [dm6]	AT	G	5.434e^-4	1	INTRON CG6282
3R	7818140	3R_7818140_SNP [dm3] 3R_11992418_SNP [dm6]	T	C	5.437e^-4	1	INTRON mfas	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20325065	2R_20325065_SNP [dm3] 2R_24437542_SNP [dm6]	A	T	5.441e^-4	1	INTERGENIC
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	5.458e^-4	1	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
2L	7768203	2L_7768203_SNP [dm3] 2L_7768203_SNP [dm6]	T	A	5.463e^-4	1	INTRON CG7191
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	5.476e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
X	5708904	X_5708904_DEL [dm3] X_5814871_DEL [dm6]	AA	A	5.476e^-4	1	UTR_3_PRIME CG15766
3L	1582426	3L_1582426_SNP [dm3] 3L_1582426_SNP [dm6]	C	T	5.477e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
2L	10091543	2L_10091543_SNP [dm3] 2L_10091543_SNP [dm6]	C	A	5.481e^-4	1	UTR_3_PRIME CG13133 INTRON CG44153	TF binding site mE1_TFBS_chinmo
3L	9350114	3L_9350114_SNP [dm3] 3L_9357014_SNP [dm6]	G	A	5.482e^-4	1	INTRON UGP
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	5.489e^-4	1	INTRON CG34362
2R	17086781	2R_17086781_SNP [dm3] 2R_21199276_SNP [dm6]	C	T	5.490e^-4	1	UTR_3_PRIME Lapsyn	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	18882511	3L_18882511_SNP [dm3] 3L_18889411_SNP [dm6]	G	A	5.494e^-4	1	INTRON CG3961
3R	3350485	3R_3350485_SNP [dm3] 3R_7524763_SNP [dm6]	G	A	5.496e^-4	1	NON_SYNONYMOUS_CODING alpha-Est6	TF binding site mE1_TFBS_cad
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	5.502e^-4	1	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3558349	3L_3558349_DEL [dm3] 3L_3558349_DEL [dm6]	ATAATA	A	5.504e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	4476865	X_4476865_SNP [dm3] X_4582832_SNP [dm6]	G	T	5.509e^-4	1	INTRON CR32773
2L	902061	2L_902061_SNP [dm3] 2L_902061_SNP [dm6]	G	A	5.520e^-4	1	UPSTREAM snRNA:U1:21D DOWNSTREAM Lsp1beta INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	486931	2L_486931_SNP [dm3] 2L_486931_SNP [dm6]	T	C	5.543e^-4	1	INTRON ush	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	22226314	3R_22226314_SNP [dm3] 3R_26400592_SNP [dm6]	G	A	5.558e^-4	1	INTERGENIC
3L	2515493	3L_2515493_SNP [dm3] 3L_2515493_SNP [dm6]	C	T	5.560e^-4	1	INTRON Spn
3R	18189894	3R_18189894_SNP [dm3] 3R_22364172_SNP [dm6]	T	A	5.573e^-4	1	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	5.579e^-4	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
3L	10810654	3L_10810654_SNP [dm3] 3L_10817554_SNP [dm6]	A	G	5.583e^-4	1	DOWNSTREAM CR45247 INTERGENIC
2L	9999890	2L_9999890_SNP [dm3] 2L_9999890_SNP [dm6]	G	A	5.584e^-4	1	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	5.584e^-4	1	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
2R	18894862	2R_18894862_SNP [dm3] 2R_23007339_SNP [dm6]	G	A	5.585e^-4	1	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	21909546	2L_21909546_DEL [dm3] 2L_21909546_DEL [dm6]	ACATCGACAGACG...	A	5.591e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7278223	3L_7278223_SNP [dm3] 3L_7285123_SNP [dm6]	T	G	5.606e^-4	1	UTR_5_PRIME unc-13-4A	TF binding site mE1_TFBS_cad
2R	17345021	2R_17345021_SNP [dm3] 2R_21457516_SNP [dm6]	T	C	5.606e^-4	1	INTRON Sdc
X	10399341	X_10399341_INS [dm3] X_10505308_INS [dm6]	G	GT	5.608e^-4	1	INTRON spri
3L	2022803	3L_2022803_SNP [dm3] 3L_2022803_SNP [dm6]	G	T	5.615e^-4	1	NON_SYNONYMOUS_CODING CG42356 UPSTREAM CG42357
X	4607747	X_4607747_SNP [dm3] X_4713714_SNP [dm6]	T	C	5.615e^-4	1	INTRON Proc-R
2L	9999887	2L_9999887_SNP [dm3] 2L_9999887_SNP [dm6]	G	A	5.617e^-4	1	SYNONYMOUS_CODING SoYb INTRON CG31875	TF binding site mE1_TFBS_sens
3R	3318857	3R_3318857_SNP [dm3] 3R_7493135_SNP [dm6]	T	C	5.619e^-4	1	NON_SYNONYMOUS_CODING CG42656 DOWNSTREAM alpha-Est9 INTRON alpha-Est10
X	4586184	X_4586184_INS [dm3] X_4692151_INS [dm6]	C	CAT	5.623e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	5518131	2L_5518131_SNP [dm3] 2L_5518131_SNP [dm6]	A	C	5.630e^-4	1	NON_SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna
X	4605208	X_4605208_DEL [dm3] X_4711175_DEL [dm6]	AGTCCAAA	A	5.634e^-4	1	INTRON Proc-R
3L	3598631	3L_3598631_SNP [dm3] 3L_3598631_SNP [dm6]	C	T	5.635e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_cad
3L	13514396	3L_13514396_SNP [dm3] 3L_13521296_SNP [dm6]	C	T	5.641e^-4	1	DOWNSTREAM bru-3 INTERGENIC
3R	23530109	3R_23530109_SNP [dm3] 3R_27704387_SNP [dm6]	C	T	5.644e^-4	1	SPLICE_SITE_REGION CG12428 DOWNSTREAM btz INTRON CG12428	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22125750	3R_22125750_SNP [dm3] 3R_26300028_SNP [dm6]	C	T	5.651e^-4	1	INTERGENIC
2L	3154003	2L_3154003_SNP [dm3] 2L_3154003_SNP [dm6]	T	C	5.654e^-4	1	INTRON Mad
3R	20715549	3R_20715549_SNP [dm3] 3R_24889827_SNP [dm6]	A	T	5.657e^-4	1	INTRON CG31121
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	5.657e^-4	1	INTRON Sh
3R	20341124	3R_20341124_SNP [dm3] 3R_24515402_SNP [dm6]	C	A	5.660e^-4	1	UTR_5_PRIME CG13617 UPSTREAM CG13617 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23480594	3R_23480594_SNP [dm3] 3R_27654872_SNP [dm6]	T	C	5.664e^-4	1	INTRON tau	TF binding site mE1_TFBS_inv
2L	15979183	2L_15979183_SNP [dm3] 2L_15979183_SNP [dm6]	C	T	5.665e^-4	1	UPSTREAM CG10839 INTERGENIC
2R	7929416	2R_7929416_SNP [dm3] 2R_12041911_SNP [dm6]	G	C	5.674e^-4	1	SYNONYMOUS_CODING RpIII128
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	5.678e^-4	1	INTERGENIC
3L	3585273	3L_3585273_SNP [dm3] 3L_3585273_SNP [dm6]	C	T	5.678e^-4	1	INTRON Eip63E
3L	8396430	3L_8396430_SNP [dm3] 3L_8403330_SNP [dm6]	C	T	5.679e^-4	1	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057
2R	17967512	2R_17967512_SNP [dm3] 2R_22080007_SNP [dm6]	T	A	5.688e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Tibia_Length_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results