DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.244e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.03847
In_3R_Mo	0.02435

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.9377	0.0847
In_3R_Mo	9.6999	0.0078

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1943 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	3.208e^-6	0.945	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	6.041e^-6	0.945	UPSTREAM CG8012 INTERGENIC
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	6.457e^-6	0.945	INTRON Doa
2R	16522079	2R_16522079_SNP [dm3] 2R_20634574_SNP [dm6]	C	A	7.699e^-6	0.945	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	8.333e^-6	0.945	INTRON Sh
2R	16522034	2R_16522034_SNP [dm3] 2R_20634529_SNP [dm6]	A	G	8.480e^-6	0.945	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	16522052	2R_16522052_SNP [dm3] 2R_20634547_SNP [dm6]	C	T	8.480e^-6	0.945	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	8.862e^-6	0.945	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	9.432e^-6	0.945	UTR_3_PRIME Sema-2a
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	1.018e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	1.049e^-5	0.945	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11798043	3L_11798043_SNP [dm3] 3L_11804943_SNP [dm6]	A	G	1.201e^-5	0.945	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19356813	3R_19356813_SNP [dm3] 3R_23531091_SNP [dm6]	A	T	1.365e^-5	0.945	UPSTREAM CG10175 INTERGENIC
3L	13927092	3L_13927092_SNP [dm3] 3L_13933992_SNP [dm6]	G	T	1.457e^-5	0.945	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	11467370	2R_11467370_INS [dm3] 2R_15579865_INS [dm6]	A	AAGTGAA	1.459e^-5	0.945	INTERGENIC
2L	20319073	2L_20319073_SNP [dm3] 2L_20319073_SNP [dm6]	C	G	1.555e^-5	0.945	INTRON spir
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	1.574e^-5	0.945	INTERGENIC
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	1.577e^-5	0.945	INTERGENIC	TF binding site mE1_TFBS_sens
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	1.592e^-5	0.945	INTRON alph
3R	4426920	3R_4426920_SNP [dm3] 3R_8601198_SNP [dm6]	C	A	1.634e^-5	0.945	INTRON 5-HT2B
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	1.712e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	11467404	2R_11467404_SNP [dm3] 2R_15579899_SNP [dm6]	C	G	1.719e^-5	0.945	INTERGENIC
2R	11467386	2R_11467386_SNP [dm3] 2R_15579881_SNP [dm6]	G	A	1.755e^-5	0.945	INTERGENIC
2R	7792376	2R_7792376_SNP [dm3] 2R_11904871_SNP [dm6]	C	A	1.923e^-5	0.945	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	1.941e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	16387040	3R_16387040_SNP [dm3] 3R_20561318_SNP [dm6]	A	T	1.942e^-5	0.945	START_GAINED CG5191 UTR_5_PRIME CG5191 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4289569	X_4289569_SNP [dm3] X_4395536_SNP [dm6]	C	T	1.998e^-5	0.945	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11467342	2R_11467342_SNP [dm3] 2R_15579837_SNP [dm6]	T	A	2.041e^-5	0.945	INTERGENIC
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	2.043e^-5	0.945	UPSTREAM dnc INTRON dnc
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	2.100e^-5	0.945	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	10310614	2L_10310614_SNP [dm3] 2L_10310614_SNP [dm6]	G	T	2.163e^-5	0.945	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	2.182e^-5	0.945	UTR_3_PRIME Sema-2a
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	2.194e^-5	0.945	INTRON klg
2R	11467331	2R_11467331_SNP [dm3] 2R_15579826_SNP [dm6]	G	T	2.343e^-5	0.945	INTERGENIC
2R	17504251	2R_17504251_SNP [dm3] 2R_21616746_SNP [dm6]	G	C	2.419e^-5	0.945	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	2.518e^-5	0.945	INTRON Sh
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	2.546e^-5	0.945	INTRON CG13579
3R	18740517	3R_18740517_SNP [dm3] 3R_22914795_SNP [dm6]	A	G	2.611e^-5	0.945	INTRON klg
X	5045284	X_5045284_SNP [dm3] X_5151251_SNP [dm6]	C	A	2.720e^-5	0.945	INTRON rg & 1 other
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	2.805e^-5	0.945	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2R	18887422	2R_18887422_SNP [dm3] 2R_22999899_SNP [dm6]	G	C	2.809e^-5	0.945	INTRON twi
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	2.832e^-5	0.945	INTERGENIC
3L	7722633	3L_7722633_SNP [dm3] 3L_7729533_SNP [dm6]	G	A	2.957e^-5	0.945	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	3.022e^-5	0.945	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7722478	3L_7722478_SNP [dm3] 3L_7729378_SNP [dm6]	G	A	3.067e^-5	0.945	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	3.085e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	7792377	2R_7792377_SNP [dm3] 2R_11904872_SNP [dm6]	T	A	3.104e^-5	0.945	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	3.126e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	3.127e^-5	0.945	INTRON dpr3
3R	23873095	3R_23873095_SNP [dm3] 3R_28047373_SNP [dm6]	T	C	3.129e^-5	0.945	UPSTREAM CG34362 INTRON CG34362
3L	7722600	3L_7722600_SNP [dm3] 3L_7729500_SNP [dm6]	T	G	3.195e^-5	0.945	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	3.267e^-5	0.945	INTERGENIC
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	3.312e^-5	0.945	INTRON dpr3
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	3.340e^-5	0.945	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	25437387	3R_25437387_SNP [dm3] 3R_29611665_SNP [dm6]	A	T	3.373e^-5	0.945	INTRON alph
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	3.505e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	19356833	3R_19356833_SNP [dm3] 3R_23531111_SNP [dm6]	T	G	3.508e^-5	0.945	UPSTREAM CG10175 INTERGENIC
2L	15370895	2L_15370895_SNP [dm3] 2L_15370895_SNP [dm6]	T	G	3.625e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	3.709e^-5	0.945	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7751483	2R_7751483_SNP [dm3] 2R_11863978_SNP [dm6]	G	C	3.807e^-5	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
X	19726924	X_19726924_INS [dm3] X_19832891_INS [dm6]	G	GG	3.814e^-5	0.945	UTR_3_PRIME pico
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	3.838e^-5	0.945	SYNONYMOUS_CODING CG9850
2L	7848509	2L_7848509_SNP [dm3] 2L_7848509_SNP [dm6]	T	G	3.875e^-5	0.945	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2L	14788646	2L_14788646_SNP [dm3] 2L_14788646_SNP [dm6]	T	C	3.964e^-5	0.945	INTERGENIC
X	19726949	X_19726949_SNP [dm3] X_19832916_SNP [dm6]	A	T	4.023e^-5	0.945	UTR_3_PRIME pico
3L	7720516	3L_7720516_SNP [dm3] 3L_7727416_SNP [dm6]	T	C	4.081e^-5	0.945	UPSTREAM CG7457 DOWNSTREAM CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	4.095e^-5	0.945	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	4.095e^-5	0.945	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	4.141e^-5	0.945	INTERGENIC
2R	11409462	2R_11409462_SNP [dm3] 2R_15521957_SNP [dm6]	G	A	4.251e^-5	0.945	INTRON Khc-73
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	4.257e^-5	0.945	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	4.285e^-5	0.945	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	4.339e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	4.368e^-5	0.945	INTERGENIC
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	4.374e^-5	0.945	INTRON Sema-2b
2L	713145	2L_713145_SNP [dm3] 2L_713145_SNP [dm6]	T	C	4.421e^-5	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	4.441e^-5	0.945	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5752313	2L_5752313_SNP [dm3] 2L_5752313_SNP [dm6]	T	A	4.459e^-5	0.945	INTRON CG11030
2L	13138840	2L_13138840_SNP [dm3] 2L_13138840_SNP [dm6]	A	G	4.465e^-5	0.945	INTERGENIC
3R	24201927	3R_24201927_SNP [dm3] 3R_28376205_SNP [dm6]	C	T	4.516e^-5	0.945	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	12376443	2L_12376443_SNP [dm3] 2L_12376443_SNP [dm6]	G	A	4.537e^-5	0.945	INTRON bru-2
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	4.572e^-5	0.945	INTRON CG6154
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	4.593e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	13656637	X_13656637_SNP [dm3] X_13762604_SNP [dm6]	T	G	4.613e^-5	0.945	UPSTREAM rdgB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26011590	3R_26011590_SNP [dm3] 3R_30185868_SNP [dm6]	C	T	4.617e^-5	0.945	SYNONYMOUS_CODING CG9747
2L	5752045	2L_5752045_SNP [dm3] 2L_5752045_SNP [dm6]	G	A	4.704e^-5	0.945	INTRON CG11030
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	4.777e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6495564	X_6495564_SNP [dm3] X_6601531_SNP [dm6]	T	C	4.831e^-5	0.945	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	4.970e^-5	0.945	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	6786077	2R_6786077_SNP [dm3] 2R_10898572_SNP [dm6]	G	A	5.002e^-5	0.945	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15372445	2L_15372445_SNP [dm3] 2L_15372445_SNP [dm6]	T	C	5.040e^-5	0.945	INTERGENIC
3R	24936038	3R_24936038_SNP [dm3] 3R_29110316_SNP [dm6]	G	A	5.094e^-5	0.945	SYNONYMOUS_CODING alpha-Man-Ib
2R	8929285	2R_8929285_SNP [dm3] 2R_13041780_SNP [dm6]	C	G	5.131e^-5	0.945	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2L	4213719	2L_4213719_SNP [dm3] 2L_4213719_SNP [dm6]	A	C	5.148e^-5	0.945	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	5.169e^-5	0.945	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	5.225e^-5	0.945	NON_SYNONYMOUS_CODING mbc
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	5.227e^-5	0.945	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
3R	26005517	3R_26005517_SNP [dm3] 3R_30179795_SNP [dm6]	G	A	5.229e^-5	0.945	UTR_3_PRIME CG15530 UPSTREAM Bet5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	7398509	2R_7398509_SNP [dm3] 2R_11511004_SNP [dm6]	T	C	5.254e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	5.299e^-5	0.945	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2R	12494568	2R_12494568_SNP [dm3] 2R_16607063_SNP [dm6]	G	A	5.304e^-5	0.945	UPSTREAM CG5065 INTERGENIC	TF binding site mE1_TFBS_cnc
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	5.325e^-5	0.945	INTRON fas
3R	25993011	3R_25993011_SNP [dm3] 3R_30167289_SNP [dm6]	A	T	5.338e^-5	0.945	UPSTREAM CG31030 INTRON CG31028
3R	1411485	3R_1411485_SNP [dm3] 3R_5585763_SNP [dm6]	G	T	5.384e^-5	0.945	NON_SYNONYMOUS_CODING CG2926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	5.419e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12415255	2L_12415255_SNP [dm3] 2L_12415255_SNP [dm6]	A	T	5.427e^-5	0.945	INTRON vir-1
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	5.550e^-5	0.945	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
3R	15166262	3R_15166262_SNP [dm3] 3R_19340540_SNP [dm6]	A	C	5.558e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7751507	2R_7751507_SNP [dm3] 2R_11864002_SNP [dm6]	A	T	5.592e^-5	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
3R	26807821	3R_26807821_SNP [dm3] 3R_30982099_SNP [dm6]	A	T	5.672e^-5	0.945	INTRON 5-HT7
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	5.739e^-5	0.945	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3R	24201923	3R_24201923_SNP [dm3] 3R_28376201_SNP [dm6]	T	C	5.781e^-5	0.945	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	15166245	3R_15166245_SNP [dm3] 3R_19340523_SNP [dm6]	T	A	5.801e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	5.990e^-5	0.945	INTRON bbg
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	6.002e^-5	0.945	DOWNSTREAM inv INTERGENIC
2L	5750890	2L_5750890_SNP [dm3] 2L_5750890_SNP [dm6]	C	T	6.005e^-5	0.945	INTRON CG11030	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	6.089e^-5	0.945	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19645313	2R_19645313_SNP [dm3] 2R_23757790_SNP [dm6]	G	T	6.323e^-5	0.945	SYNONYMOUS_CODING CG9850
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	6.347e^-5	0.945	INTRON CG13579
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	6.353e^-5	0.945	INTERGENIC
X	19726813	X_19726813_SNP [dm3] X_19832780_SNP [dm6]	A	T	6.578e^-5	0.945	UTR_3_PRIME pico
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	6.643e^-5	0.945	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	6.724e^-5	0.945	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	17503358	2R_17503358_SNP [dm3] 2R_21615853_SNP [dm6]	T	C	6.783e^-5	0.945	SYNONYMOUS_CODING CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	6.871e^-5	0.945	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2L	8657873	2L_8657873_SNP [dm3] 2L_8657873_SNP [dm6]	T	C	6.886e^-5	0.945	INTRON Sema-1a
X	9819021	X_9819021_SNP [dm3] X_9924988_SNP [dm6]	A	C	7.146e^-5	0.945	INTERGENIC
X	5388686	X_5388686_SNP [dm3] X_5494653_SNP [dm6]	C	A	7.193e^-5	0.945	SYNONYMOUS_CODING frma DOWNSTREAM SPR
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	7.366e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	19726815	X_19726815_INS [dm3] X_19832782_INS [dm6]	T	TGT	7.509e^-5	0.945	UTR_3_PRIME pico
2L	1951152	2L_1951152_SNP [dm3] 2L_1951152_SNP [dm6]	G	A	7.516e^-5	0.945	SYNONYMOUS_CODING erm	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11409464	2R_11409464_SNP [dm3] 2R_15521959_SNP [dm6]	G	C	7.588e^-5	0.945	INTRON Khc-73
3R	25990497	3R_25990497_SNP [dm3] 3R_30164775_SNP [dm6]	A	G	7.608e^-5	0.945	UTR_3_PRIME CG31030
3L	11700348	3L_11700348_SNP [dm3] 3L_11707248_SNP [dm6]	A	T	7.618e^-5	0.945	INTRON CG11658	TF binding site mE1_TFBS_cad
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	7.621e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6462293	2L_6462293_SNP [dm3] 2L_6462293_SNP [dm6]	A	C	7.799e^-5	0.945	INTRON CG16947
2L	16236466	2L_16236466_SNP [dm3] 2L_16236466_SNP [dm6]	T	C	7.860e^-5	0.945	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
3R	26008311	3R_26008311_SNP [dm3] 3R_30182589_SNP [dm6]	G	A	7.918e^-5	0.945	INTERGENIC
2L	12148324	2L_12148324_SNP [dm3] 2L_12148324_SNP [dm6]	C	T	7.963e^-5	0.945	INTRON CG31760
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	7.975e^-5	0.945	INTRON CG32365
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	8.079e^-5	0.945	DOWNSTREAM CR44629 & 1 other INTERGENIC
2L	18294858	2L_18294858_SNP [dm3] 2L_18294858_SNP [dm6]	G	T	8.273e^-5	0.945	UTR_5_PRIME CG5790 UPSTREAM CR43358	TF binding site mE1_TFBS_inv
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	8.320e^-5	0.945	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	8.385e^-5	0.945	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	8.434e^-5	0.945	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11700370	3L_11700370_SNP [dm3] 3L_11707270_SNP [dm6]	T	A	8.559e^-5	0.945	INTRON CG11658	TF binding site mE1_TFBS_cad
3R	25990599	3R_25990599_SNP [dm3] 3R_30164877_SNP [dm6]	G	A	8.685e^-5	0.945	UTR_3_PRIME CG31030
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	8.709e^-5	0.945	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18888654	2R_18888654_SNP [dm3] 2R_23001131_SNP [dm6]	C	G	8.760e^-5	0.945	INTRON twi
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	8.786e^-5	0.945	INTRON CG5888
3L	16720426	3L_16720426_SNP [dm3] 3L_16727326_SNP [dm6]	A	C	8.807e^-5	0.945	UTR_3_PRIME PGRP-SB1 DOWNSTREAM PGRP-SB2	TF binding site mE1_TFBS_cad
3R	16385603	3R_16385603_SNP [dm3] 3R_20559881_SNP [dm6]	A	G	8.844e^-5	0.945	UPSTREAM CG5191 DOWNSTREAM CG5180 INTRON CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13315972	2L_13315972_SNP [dm3] 2L_13315972_SNP [dm6]	C	G	8.851e^-5	0.945	INTRON CG43778
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	9.070e^-5	0.945	INTRON Ten-a
2L	2059331	2L_2059331_SNP [dm3] 2L_2059331_SNP [dm6]	T	A	9.076e^-5	0.945	UTR_3_PRIME dpr3
2R	18033646	2R_18033646_SNP [dm3] 2R_22146141_SNP [dm6]	C	T	9.161e^-5	0.945	INTRON a
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	9.220e^-5	0.945	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22553902	3R_22553902_INS [dm3] 3R_26728180_INS [dm6]	G	GAAGGGCGGCCAG...	9.228e^-5	0.945	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
2L	3964524	2L_3964524_SNP [dm3] 2L_3964524_SNP [dm6]	G	A	9.266e^-5	0.945	INTRON fred
2L	12415253	2L_12415253_SNP [dm3] 2L_12415253_SNP [dm6]	G	A	9.307e^-5	0.945	INTRON vir-1
X	3184944	X_3184944_SNP [dm3] X_3290911_SNP [dm6]	T	G	9.502e^-5	0.945	UPSTREAM dnc INTRON dnc
X	9414903	X_9414903_SNP [dm3] X_9520870_SNP [dm6]	A	T	9.513e^-5	0.945	INTRON CG32700
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	9.531e^-5	0.945	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	9.531e^-5	0.945	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4537361	X_4537361_SNP [dm3] X_4643328_SNP [dm6]	A	T	9.633e^-5	0.945	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5788962	X_5788962_SNP [dm3] X_5894929_SNP [dm6]	G	A	9.647e^-5	0.945	INTRON CR45668	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	16381179	3R_16381179_SNP [dm3] 3R_20555457_SNP [dm6]	G	C	9.681e^-5	0.945	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	9.720e^-5	0.945	UPSTREAM CG11112 INTRON Eaf
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	9.721e^-5	0.945	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	9.742e^-5	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	3873466	2R_3873466_SNP [dm3] 2R_7985961_SNP [dm6]	G	A	9.744e^-5	0.945	INTRON ACC
3R	19232074	3R_19232074_SNP [dm3] 3R_23406352_SNP [dm6]	C	T	9.770e^-5	0.945	SYNONYMOUS_CODING Ir94e
2L	12376418	2L_12376418_SNP [dm3] 2L_12376418_SNP [dm6]	A	C	9.809e^-5	0.945	INTRON bru-2
3R	14903018	3R_14903018_SNP [dm3] 3R_19077296_SNP [dm6]	A	G	9.912e^-5	0.945	INTRON cdi
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	1.000e^-4	0.945	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	1.008e^-4	0.945	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	1.013e^-4	0.945	INTERGENIC
2R	9484121	2R_9484121_SNP [dm3] 2R_13596616_SNP [dm6]	G	A	1.019e^-4	0.945	UPSTREAM S-Lap5 DOWNSTREAM CG6197 INTERGENIC	TF binding site mE1_TFBS_cad
X	17166838	X_17166838_SNP [dm3] X_17272805_SNP [dm6]	T	C	1.028e^-4	0.945	INTRON f	TF binding site mE1_TFBS_cad
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	1.029e^-4	0.945	INTRON a
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	1.036e^-4	0.945	DOWNSTREAM mbl INTRON mbl
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	1.055e^-4	0.945	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3R	3510580	3R_3510580_SNP [dm3] 3R_7684858_SNP [dm6]	G	A	1.058e^-4	0.945	INTRON Nlg1
2L	10421836	2L_10421836_SNP [dm3] 2L_10421836_SNP [dm6]	G	A	1.082e^-4	0.945	SYNONYMOUS_CODING pie	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9404566	3R_9404566_SNP [dm3] 3R_13578844_SNP [dm6]	T	A	1.083e^-4	0.945	INTERGENIC
2R	8326848	2R_8326848_SNP [dm3] 2R_12439343_SNP [dm6]	G	A	1.089e^-4	0.945	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26008416	3R_26008416_SNP [dm3] 3R_30182694_SNP [dm6]	C	A	1.094e^-4	0.945	INTERGENIC
2L	5856812	2L_5856812_SNP [dm3] 2L_5856812_SNP [dm6]	G	A	1.096e^-4	0.945	DOWNSTREAM TrissinR INTERGENIC
2R	3838924	2R_3838924_SNP [dm3] 2R_7951419_SNP [dm6]	C	T	1.098e^-4	0.945	UTR_3_PRIME CG30378 DOWNSTREAM CG11165 & 1 other INTRON CG14764	TF binding site BDTNP1_TFBS_twi
2L	6148861	2L_6148861_SNP [dm3] 2L_6148861_SNP [dm6]	T	C	1.102e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	12376403	2L_12376403_SNP [dm3] 2L_12376403_SNP [dm6]	A	G	1.124e^-4	0.945	INTRON bru-2
2L	12376415	2L_12376415_SNP [dm3] 2L_12376415_SNP [dm6]	G	A	1.124e^-4	0.945	INTRON bru-2
2L	13021327	2L_13021327_SNP [dm3] 2L_13021327_SNP [dm6]	T	A	1.129e^-4	0.945	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7751412	2R_7751412_SNP [dm3] 2R_11863907_SNP [dm6]	T	A	1.130e^-4	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
3L	9932862	3L_9932862_SNP [dm3] 3L_9939762_SNP [dm6]	C	T	1.133e^-4	0.945	INTRON CG34356
3R	25990623	3R_25990623_SNP [dm3] 3R_30164901_SNP [dm6]	A	C	1.139e^-4	0.945	UTR_3_PRIME CG31030
3R	26006362	3R_26006362_SNP [dm3] 3R_30180640_SNP [dm6]	C	A	1.140e^-4	0.945	SYNONYMOUS_CODING Bet5 DOWNSTREAM CG15530	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
X	22221983	X_22221983_SNP [dm3] X_22820147_SNP [dm6]	A	G	1.145e^-4	0.945	INTERGENIC
2L	7752263	2L_7752263_SNP [dm3] 2L_7752263_SNP [dm6]	G	A	1.147e^-4	0.945	UTR_3_PRIME CG7203 UPSTREAM CR45718
3L	12617519	3L_12617519_SNP [dm3] 3L_12624419_SNP [dm6]	G	A	1.152e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18888655	2R_18888655_SNP [dm3] 2R_23001132_SNP [dm6]	C	A	1.153e^-4	0.945	INTRON twi
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	1.153e^-4	0.945	INTRON CG32206
X	16972194	X_16972194_DEL [dm3] X_17078161_DEL [dm6]	TTTT	T	1.157e^-4	0.945	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	15166237	3R_15166237_SNP [dm3] 3R_19340515_SNP [dm6]	C	T	1.160e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	1.162e^-4	0.945	INTRON CG32085
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	1.162e^-4	0.945	DOWNSTREAM CG33460 INTRON CG33461
3L	7720649	3L_7720649_SNP [dm3] 3L_7727549_SNP [dm6]	C	A	1.166e^-4	0.945	DOWNSTREAM CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12039763	2R_12039763_SNP [dm3] 2R_16152258_SNP [dm6]	G	A	1.168e^-4	0.945	INTRON lbk	transposable element FlyBase
3R	26753407	3R_26753407_DEL [dm3] 3R_30927685_DEL [dm6]	TT	T	1.169e^-4	0.945	INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7525468	2R_7525468_SNP [dm3] 2R_11637963_SNP [dm6]	G	T	1.171e^-4	0.945	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	7405128	2L_7405128_SNP [dm3] 2L_7405128_SNP [dm6]	C	A	1.179e^-4	0.945	UPSTREAM CG5177 DOWNSTREAM CG5171 INTERGENIC
3R	22553871	3R_22553871_SNP [dm3] 3R_26728149_SNP [dm6]	C	T	1.187e^-4	0.945	UPSTREAM CG14245 INTRON CG14246	TF binding site mE1_TFBS_chinmo
2L	18293779	2L_18293779_DEL [dm3] 2L_18293779_DEL [dm6]	CTAC	C	1.189e^-4	0.945	DOWNSTREAM Sfp36F EXON CR43358
3R	24824591	3R_24824591_SNP [dm3] 3R_28998869_SNP [dm6]	A	G	1.192e^-4	0.945	INTRON wat
3R	14903010	3R_14903010_SNP [dm3] 3R_19077288_SNP [dm6]	A	T	1.194e^-4	0.945	INTRON cdi
2L	6953894	2L_6953894_SNP [dm3] 2L_6953894_SNP [dm6]	T	C	1.198e^-4	0.945	SYNONYMOUS_CODING SA DOWNSTREAM CG13775
3R	16894862	3R_16894862_SNP [dm3] 3R_21069140_SNP [dm6]	T	C	1.200e^-4	0.945	INTRON AnxB9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.205e^-4	0.945	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12376409	2L_12376409_SNP [dm3] 2L_12376409_SNP [dm6]	T	A	1.213e^-4	0.945	INTRON bru-2
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	1.216e^-4	0.945	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16494844	3L_16494844_SNP [dm3] 3L_16501744_SNP [dm6]	G	A	1.219e^-4	0.945	DOWNSTREAM CG43373 INTRON CG43373
3R	6489066	3R_6489066_SNP [dm3] 3R_10663344_SNP [dm6]	G	A	1.225e^-4	0.945	INTERGENIC
X	12845743	X_12845743_SNP [dm3] X_12951710_SNP [dm6]	G	A	1.229e^-4	0.945	INTRON hec
2L	2061137	2L_2061137_SNP [dm3] 2L_2061137_SNP [dm6]	G	T	1.234e^-4	0.945	INTRON dpr3
3L	17230888	3L_17230888_SNP [dm3] 3L_17237788_SNP [dm6]	A	T	1.238e^-4	0.945	DOWNSTREAM CG6512 INTRON Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18199313	3L_18199313_SNP [dm3] 3L_18206213_SNP [dm6]	T	C	1.241e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	7746068	2L_7746068_SNP [dm3] 2L_7746068_SNP [dm6]	T	A	1.252e^-4	0.945	INTERGENIC
3R	12991331	3R_12991331_SNP [dm3] 3R_17165609_SNP [dm6]	A	G	1.254e^-4	0.945	INTRON Mur89F
2R	12039752	2R_12039752_SNP [dm3] 2R_16152247_SNP [dm6]	A	T	1.270e^-4	0.945	INTRON lbk	transposable element FlyBase
X	16972229	X_16972229_SNP [dm3] X_17078196_SNP [dm6]	A	G	1.271e^-4	0.945	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	1.284e^-4	0.945	INTRON a
3R	24909995	3R_24909995_SNP [dm3] 3R_29084273_SNP [dm6]	C	T	1.287e^-4	0.945	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19009769	3L_19009769_SNP [dm3] 3L_19016669_SNP [dm6]	C	T	1.289e^-4	0.945	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24275701	3R_24275701_SNP [dm3] 3R_28449979_SNP [dm6]	A	G	1.297e^-4	0.945	INTRON beat-VI
3L	19012325	3L_19012325_SNP [dm3] 3L_19019225_SNP [dm6]	T	C	1.309e^-4	0.945	INTRON nkd
2R	17786082	2R_17786082_SNP [dm3] 2R_21898577_SNP [dm6]	G	A	1.316e^-4	0.945	INTRON Fili
3L	7720920	3L_7720920_SNP [dm3] 3L_7727820_SNP [dm6]	C	T	1.326e^-4	0.945	UTR_3_PRIME CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	1.327e^-4	0.945	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
2L	3084823	2L_3084823_SNP [dm3] 2L_3084823_SNP [dm6]	C	G	1.329e^-4	0.945	INTRON toc
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.337e^-4	0.945	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	23882029	3R_23882029_DEL [dm3] 3R_28056307_DEL [dm6]	TA	T	1.338e^-4	0.945	INTRON CG34362
2R	11409484	2R_11409484_SNP [dm3] 2R_15521979_SNP [dm6]	T	C	1.347e^-4	0.945	INTRON Khc-73
2L	1094324	2L_1094324_SNP [dm3] 2L_1094324_SNP [dm6]	A	G	1.367e^-4	0.945	INTRON CG4629
2R	15556068	2R_15556068_SNP [dm3] 2R_19668563_SNP [dm6]	C	T	1.368e^-4	0.945	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	19780270	X_19780270_SNP [dm3] X_19886237_SNP [dm6]	T	G	1.399e^-4	0.945	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	1.408e^-4	0.945	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
2L	2059733	2L_2059733_DEL [dm3] 2L_2059733_DEL [dm6]	CC	C	1.410e^-4	0.945	UTR_3_PRIME dpr3
2R	7751414	2R_7751414_DEL [dm3] 2R_11863909_DEL [dm6]	TTTAGCTTAAAAACCCCCAA...	A	1.425e^-4	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	1.428e^-4	0.945	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	12376511	2L_12376511_SNP [dm3] 2L_12376511_SNP [dm6]	G	A	1.440e^-4	0.945	INTRON bru-2
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.441e^-4	0.945	INTERGENIC
3L	12437771	3L_12437771_SNP [dm3] 3L_12444671_SNP [dm6]	A	C	1.450e^-4	0.945	INTERGENIC
3R	3077993	3R_3077993_SNP [dm3] 3R_7252271_SNP [dm6]	G	C	1.450e^-4	0.945	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
3L	17737149	3L_17737149_SNP [dm3] 3L_17744049_SNP [dm6]	C	G	1.452e^-4	0.945	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	1.456e^-4	0.945	UPSTREAM Mlp60A INTERGENIC
2L	7768696	2L_7768696_INS [dm3] 2L_7768696_INS [dm6]	T	TGAACGCATT	1.459e^-4	0.945	INTRON CG7191
3L	16874127	3L_16874127_SNP [dm3] 3L_16881027_SNP [dm6]	A	G	1.460e^-4	0.945	INTRON Lmpt
2R	12421758	2R_12421758_SNP [dm3] 2R_16534253_SNP [dm6]	C	G	1.465e^-4	0.945	UPSTREAM loopin-1 DOWNSTREAM Sema-2a INTERGENIC
2R	6055389	2R_6055389_SNP [dm3] 2R_10167884_SNP [dm6]	T	C	1.470e^-4	0.945	INTRON KCNQ
3R	23409676	3R_23409676_SNP [dm3] 3R_27583954_SNP [dm6]	T	C	1.470e^-4	0.945	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	1.470e^-4	0.945	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
2L	10310599	2L_10310599_SNP [dm3] 2L_10310599_SNP [dm6]	T	G	1.470e^-4	0.945	UTR_5_PRIME Cdk5alpha DOWNSTREAM CG5385	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	1.474e^-4	0.945	INTRON bbg
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	1.478e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2346945	X_2346945_SNP [dm3] X_2452912_SNP [dm6]	T	G	1.481e^-4	0.945	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	1.484e^-4	0.945	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
2R	12952688	2R_12952688_SNP [dm3] 2R_17065183_SNP [dm6]	G	A	1.486e^-4	0.945	NON_SYNONYMOUS_CODING CG6967 DOWNSTREAM CG30460	TF binding site mE1_TFBS_sens
2L	18293869	2L_18293869_SNP [dm3] 2L_18293869_SNP [dm6]	G	A	1.489e^-4	0.945	UPSTREAM CG5790 EXON CR43358
3R	25762270	3R_25762270_SNP [dm3] 3R_29936548_SNP [dm6]	G	A	1.491e^-4	0.945	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12039758	2R_12039758_SNP [dm3] 2R_16152253_SNP [dm6]	A	T	1.494e^-4	0.945	INTRON lbk	transposable element FlyBase
X	22076525	X_22076525_SNP [dm3] X_22674689_SNP [dm6]	C	G	1.495e^-4	0.945	INTRON CR44997
X	16082807	X_16082807_SNP [dm3] X_16188774_SNP [dm6]	C	T	1.495e^-4	0.945	INTERGENIC
3R	21800050	3R_21800050_SNP [dm3] 3R_25974328_SNP [dm6]	C	G	1.509e^-4	0.945	INTRON CG42261
3R	16385054	3R_16385054_SNP [dm3] 3R_20559332_SNP [dm6]	T	G	1.510e^-4	0.945	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8921245	2R_8921245_SNP [dm3] 2R_13033740_SNP [dm6]	T	C	1.511e^-4	0.945	INTERGENIC
2L	10469127	2L_10469127_SNP [dm3] 2L_10469127_SNP [dm6]	A	T	1.522e^-4	0.945	INTRON RluA-1
3R	23409883	3R_23409883_SNP [dm3] 3R_27584161_SNP [dm6]	A	G	1.524e^-4	0.945	SYNONYMOUS_CODING raps	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16804312	3L_16804312_SNP [dm3] 3L_16811212_SNP [dm6]	T	C	1.524e^-4	0.945	INTRON nudC & 1 other
3R	25993034	3R_25993034_SNP [dm3] 3R_30167312_SNP [dm6]	T	G	1.529e^-4	0.945	UPSTREAM CG31030 INTRON CG31028
X	16722617	X_16722617_SNP [dm3] X_16828584_SNP [dm6]	A	G	1.530e^-4	0.945	UPSTREAM CG13004 INTRON CG13004
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	1.530e^-4	0.945	INTRON phl & 1 other
2R	7800808	2R_7800808_SNP [dm3] 2R_11913303_SNP [dm6]	C	A	1.531e^-4	0.945	UPSTREAM CG13183 INTERGENIC
2R	15903616	2R_15903616_SNP [dm3] 2R_20016111_SNP [dm6]	T	G	1.533e^-4	0.945	DOWNSTREAM CR44630 INTERGENIC
3R	26008294	3R_26008294_SNP [dm3] 3R_30182572_SNP [dm6]	T	G	1.535e^-4	0.945	INTERGENIC
2L	2863634	2L_2863634_INS [dm3] 2L_2863634_INS [dm6]	A	AA	1.542e^-4	0.945	INTRON CG2991	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12437900	3L_12437900_SNP [dm3] 3L_12444800_SNP [dm6]	C	A	1.552e^-4	0.945	INTERGENIC
3R	14394837	3R_14394837_SNP [dm3] 3R_18569115_SNP [dm6]	A	T	1.554e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	1.564e^-4	0.945	INTERGENIC
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	1.579e^-4	0.945	INTRON CG1461
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	1.583e^-4	0.945	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3784831	2L_3784831_INS [dm3] 2L_3784831_INS [dm6]	GT	TCC	1.585e^-4	0.945	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	1.588e^-4	0.945	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	1.597e^-4	0.945	UPSTREAM CG33225 INTERGENIC
2R	7256496	2R_7256496_SNP [dm3] 2R_11368991_SNP [dm6]	G	A	1.599e^-4	0.945	SYNONYMOUS_CODING CG13204	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15370909	2L_15370909_SNP [dm3] 2L_15370909_SNP [dm6]	C	A	1.600e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	20357306	2R_20357306_SNP [dm3] 2R_24469783_SNP [dm6]	T	C	1.604e^-4	0.945	INTRON CG13579
2R	9442529	2R_9442529_SNP [dm3] 2R_13555024_SNP [dm6]	C	T	1.618e^-4	0.945	UPSTREAM link INTRON Roe1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	1.619e^-4	0.945	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	506971	2L_506971_SNP [dm3] 2L_506971_SNP [dm6]	C	T	1.626e^-4	0.945	INTRON ush
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	1.631e^-4	0.945	INTRON fas
3R	3078001	3R_3078001_SNP [dm3] 3R_7252279_SNP [dm6]	C	A	1.640e^-4	0.945	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
2L	12415207	2L_12415207_SNP [dm3] 2L_12415207_SNP [dm6]	A	G	1.640e^-4	0.945	INTRON vir-1
2L	4203691	2L_4203691_SNP [dm3] 2L_4203691_SNP [dm6]	T	G	1.645e^-4	0.945	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	1.651e^-4	0.945	INTRON Hnf4 & 1 other
X	18363771	X_18363771_SNP [dm3] X_18469738_SNP [dm6]	C	T	1.672e^-4	0.945	INTRON CG32547
3R	22530093	3R_22530093_SNP [dm3] 3R_26704371_SNP [dm6]	T	G	1.674e^-4	0.945	INTRON amon
X	8414123	X_8414123_INS [dm3] X_8520090_INS [dm6]	T	TC	1.683e^-4	0.945	INTRON Nrg
X	2567894	X_2567894_SNP [dm3] X_2673861_SNP [dm6]	C	A	1.687e^-4	0.945	INTRON sgg
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	1.687e^-4	0.945	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	1.698e^-4	0.945	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2L	6148846	2L_6148846_SNP [dm3] 2L_6148846_SNP [dm6]	T	G	1.698e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	1.709e^-4	0.945	UPSTREAM dnc INTRON dnc
2L	712504	2L_712504_SNP [dm3] 2L_712504_SNP [dm6]	G	A	1.709e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12425748	2R_12425748_SNP [dm3] 2R_16538243_SNP [dm6]	G	A	1.711e^-4	0.945	INTERGENIC
3R	16041686	3R_16041686_SNP [dm3] 3R_20215964_SNP [dm6]	T	G	1.725e^-4	0.945	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	1.731e^-4	0.945	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	23410172	3R_23410172_SNP [dm3] 3R_27584450_SNP [dm6]	C	A	1.733e^-4	0.945	INTRON raps	TF binding site mE1_TFBS_chinmo
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	1.735e^-4	0.945	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	1.741e^-4	0.945	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	1.742e^-4	0.945	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16722636	X_16722636_SNP [dm3] X_16828603_SNP [dm6]	A	G	1.746e^-4	0.945	UPSTREAM CG13004 INTRON CG13004
3R	21802552	3R_21802552_SNP [dm3] 3R_25976830_SNP [dm6]	C	G	1.752e^-4	0.945	INTRON CG42261
X	16082816	X_16082816_SNP [dm3] X_16188783_SNP [dm6]	G	C	1.755e^-4	0.945	INTERGENIC
3L	19016396	3L_19016396_SNP [dm3] 3L_19023296_SNP [dm6]	C	A	1.766e^-4	0.945	INTRON nkd	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
2L	18295289	2L_18295289_SNP [dm3] 2L_18295289_SNP [dm6]	C	T	1.768e^-4	0.945	SYNONYMOUS_CODING CG5790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14395022	3R_14395022_SNP [dm3] 3R_18569300_SNP [dm6]	G	A	1.784e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2R	19629168	2R_19629168_SNP [dm3] 2R_23741645_SNP [dm6]	A	G	1.793e^-4	0.945	INTRON egl
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	1.794e^-4	0.945	INTRON fas
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	1.794e^-4	0.945	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2R	11467368	2R_11467368_INS [dm3] 2R_15579863_INS [dm6]	T	TTAAGATG	1.800e^-4	0.945	INTERGENIC
3L	11854074	3L_11854074_SNP [dm3] 3L_11860974_SNP [dm6]	G	C	1.803e^-4	0.945	INTRON CG44837
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	1.812e^-4	0.945	INTRON lilli
3R	26927768	3R_26927768_SNP [dm3] 3R_31102046_SNP [dm6]	C	T	1.813e^-4	0.945	UPSTREAM CG15553 INTERGENIC
2L	13021373	2L_13021373_SNP [dm3] 2L_13021373_SNP [dm6]	A	G	1.815e^-4	0.945	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13021375	2L_13021375_SNP [dm3] 2L_13021375_SNP [dm6]	T	G	1.815e^-4	0.945	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	1.825e^-4	0.945	INTRON Ten-a
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	1.837e^-4	0.945	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	12376428	2L_12376428_DEL [dm3] 2L_12376428_DEL [dm6]	AA	A	1.842e^-4	0.945	INTRON bru-2
3R	3875419	3R_3875419_SNP [dm3] 3R_8049697_SNP [dm6]	T	C	1.848e^-4	0.945	UTR_5_PRIME CG43061 DOWNSTREAM CG43618 INTRON CG43060
3R	24756686	3R_24756686_SNP [dm3] 3R_28930964_SNP [dm6]	A	C	1.857e^-4	0.945	INTRON CG14521
3L	15457366	3L_15457366_SNP [dm3] 3L_15464266_SNP [dm6]	A	G	1.868e^-4	0.945	INTERGENIC
3R	3077871	3R_3077871_SNP [dm3] 3R_7252149_SNP [dm6]	A	T	1.875e^-4	0.945	UTR_3_PRIME Gld UPSTREAM Obp84a DOWNSTREAM CG10050
2L	712537	2L_712537_SNP [dm3] 2L_712537_SNP [dm6]	C	A	1.879e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1454151	3L_1454151_SNP [dm3] 3L_1454151_SNP [dm6]	A	G	1.880e^-4	0.945	INTRON Ptp61F
3R	25992932	3R_25992932_SNP [dm3] 3R_30167210_SNP [dm6]	A	G	1.880e^-4	0.945	SYNONYMOUS_CODING CG31028 UPSTREAM CG31030	TF binding site BDTNP1_TFBS_twi
3R	14228649	3R_14228649_SNP [dm3] 3R_18402927_SNP [dm6]	G	A	1.882e^-4	0.945	UPSTREAM koko & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.882e^-4	0.945	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.882e^-4	0.945	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	13021316	2L_13021316_SNP [dm3] 2L_13021316_SNP [dm6]	C	A	1.885e^-4	0.945	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9222216	X_9222216_SNP [dm3] X_9328183_SNP [dm6]	T	C	1.886e^-4	0.945	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7751475	2R_7751475_SNP [dm3] 2R_11863970_SNP [dm6]	G	A	1.890e^-4	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
3R	18343321	3R_18343321_SNP [dm3] 3R_22517599_SNP [dm6]	T	A	1.900e^-4	0.945	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	11409504	2R_11409504_SNP [dm3] 2R_15521999_SNP [dm6]	T	C	1.911e^-4	0.945	SPLICE_SITE_REGION Khc-73 INTRON Khc-73
3L	11853204	3L_11853204_SNP [dm3] 3L_11860104_SNP [dm6]	A	C	1.913e^-4	0.945	INTRON CG44837
2L	18293786	2L_18293786_SNP [dm3] 2L_18293786_SNP [dm6]	C	T	1.919e^-4	0.945	DOWNSTREAM Sfp36F EXON CR43358
2L	18293815	2L_18293815_SNP [dm3] 2L_18293815_SNP [dm6]	A	G	1.919e^-4	0.945	DOWNSTREAM Sfp36F EXON CR43358
X	12814167	X_12814167_INS [dm3] X_12920134_INS [dm6]	C	CCTCCCCCCAC...	1.922e^-4	0.945	INTRON fne
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	1.925e^-4	0.945	INTRON msi
2L	10822766	2L_10822766_SNP [dm3] 2L_10822766_SNP [dm6]	C	A	1.929e^-4	0.945	DOWNSTREAM CG17134 INTRON Nos
3R	19231414	3R_19231414_SNP [dm3] 3R_23405692_SNP [dm6]	G	A	1.954e^-4	0.945	NON_SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2R	7400335	2R_7400335_INS [dm3] 2R_11512830_INS [dm6]	G	GGTT	1.961e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4238713	2L_4238713_SNP [dm3] 2L_4238713_SNP [dm6]	C	T	1.976e^-4	0.945	INTERGENIC
3R	23477306	3R_23477306_INS [dm3] 3R_27651584_INS [dm6]	A	ATGCCTAGG	1.982e^-4	0.945	FRAME_SHIFT tau UPSTREAM tau INTRON tau	TF binding site mE1_TFBS_bab1
2R	17504641	2R_17504641_SNP [dm3] 2R_21617136_SNP [dm6]	A	G	2.002e^-4	0.945	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Ubx
2L	6146061	2L_6146061_SNP [dm3] 2L_6146061_SNP [dm6]	G	T	2.007e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	2.014e^-4	0.945	INTRON lilli	TF binding site mE1_TFBS_Trl
3R	22901000	3R_22901000_SNP [dm3] 3R_27075278_SNP [dm6]	A	T	2.026e^-4	0.945	UPSTREAM CG14257 INTERGENIC
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	2.032e^-4	0.945	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7751467	2R_7751467_SNP [dm3] 2R_11863962_SNP [dm6]	T	A	2.033e^-4	0.945	UPSTREAM CG42531 & 1 other INTERGENIC
2R	8278143	2R_8278143_SNP [dm3] 2R_12390638_SNP [dm6]	A	C	2.038e^-4	0.945	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC
2L	8712877	2L_8712877_SNP [dm3] 2L_8712877_SNP [dm6]	G	A	2.041e^-4	0.945	NON_SYNONYMOUS_CODING raw
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	2.053e^-4	0.945	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	2.055e^-4	0.945	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16046822	2R_16046822_SNP [dm3] 2R_20159317_SNP [dm6]	G	A	2.055e^-4	0.945	INTERGENIC
2R	14537615	2R_14537615_SNP [dm3] 2R_18650110_SNP [dm6]	G	T	2.066e^-4	0.945	INTRON SP2637
2L	8025385	2L_8025385_SNP [dm3] 2L_8025385_SNP [dm6]	T	G	2.071e^-4	0.945	SYNONYMOUS_CODING Tg
2R	17504259	2R_17504259_SNP [dm3] 2R_21616754_SNP [dm6]	T	A	2.071e^-4	0.945	UTR_5_PRIME CG18870 DOWNSTREAM clt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23872531	3R_23872531_SNP [dm3] 3R_28046809_SNP [dm6]	G	A	2.074e^-4	0.945	UPSTREAM CG34362 INTRON CG34362
2L	16520614	2L_16520614_DEL [dm3] 2L_16520614_DEL [dm6]	TTT	T	2.077e^-4	0.945	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	5824647	2L_5824647_DEL [dm3] 2L_5824647_DEL [dm6]	AATCATTAAATGCA...	A	2.079e^-4	0.945	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	2.084e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2346914	X_2346914_SNP [dm3] X_2452881_SNP [dm6]	A	C	2.093e^-4	0.945	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20844269	3R_20844269_SNP [dm3] 3R_25018547_SNP [dm6]	T	C	2.094e^-4	0.945	SYNONYMOUS_CODING tnc
2R	15479395	2R_15479395_SNP [dm3] 2R_19591890_SNP [dm6]	C	A	2.096e^-4	0.945	INTRON sm
2R	15899920	2R_15899920_SNP [dm3] 2R_20012415_SNP [dm6]	T	C	2.099e^-4	0.945	INTERGENIC
2L	18145382	2L_18145382_SNP [dm3] 2L_18145382_SNP [dm6]	G	T	2.103e^-4	0.945	INTRON Socs36E EXON CR44478	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	2567945	X_2567945_SNP [dm3] X_2673912_SNP [dm6]	T	A	2.110e^-4	0.945	NON_SYNONYMOUS_CODING sgg INTRON sgg
2L	5915303	2L_5915303_SNP [dm3] 2L_5915303_SNP [dm6]	T	C	2.113e^-4	0.945	SYNONYMOUS_CODING bchs
2L	6891432	2L_6891432_SNP [dm3] 2L_6891432_SNP [dm6]	C	T	2.114e^-4	0.945	INTRON Nlg2
2L	1212154	2L_1212154_SNP [dm3] 2L_1212154_SNP [dm6]	A	C	2.117e^-4	0.945	INTERGENIC
3R	18060259	3R_18060259_SNP [dm3] 3R_22234537_SNP [dm6]	C	G	2.130e^-4	0.945	INTRON SKIP
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	2.139e^-4	0.945	INTRON kel
2R	7798323	2R_7798323_SNP [dm3] 2R_11910818_SNP [dm6]	T	G	2.142e^-4	0.945	INTRON CG13183
2R	15899966	2R_15899966_DEL [dm3] 2R_20012461_DEL [dm6]	TGG	T	2.142e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_run
4	494445	4_494445_SNP [dm3] 4_473819_SNP [dm6]	G	A	2.144e^-4	0.945	INTRON Asator
4	442912	4_442912_SNP [dm3] 4_422286_SNP [dm6]	C	T	2.166e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19619527	2R_19619527_SNP [dm3] 2R_23732004_SNP [dm6]	G	C	2.170e^-4	0.945	INTRON Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7595398	2L_7595398_SNP [dm3] 2L_7595398_SNP [dm6]	T	A	2.179e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1953784	2L_1953784_SNP [dm3] 2L_1953784_SNP [dm6]	A	G	2.183e^-4	0.945	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	11437670	2R_11437670_SNP [dm3] 2R_15550165_SNP [dm6]	C	T	2.189e^-4	0.945	UPSTREAM CG8192 INTERGENIC	TF binding site mE1_TFBS_Trl
4	439136	4_439136_SNP [dm3] 4_418510_SNP [dm6]	C	T	2.190e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	13006565	3R_13006565_SNP [dm3] 3R_17180843_SNP [dm6]	G	A	2.191e^-4	0.945	INTRON Mur89F
3R	21272578	3R_21272578_SNP [dm3] 3R_25446856_SNP [dm6]	A	G	2.208e^-4	0.945	INTRON Fur1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	6972776	2L_6972776_SNP [dm3] 2L_6972776_SNP [dm6]	C	A	2.217e^-4	0.945	DOWNSTREAM uif EXON CR43142
X	16972204	X_16972204_SNP [dm3] X_17078171_SNP [dm6]	A	G	2.220e^-4	0.945	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
X	16972215	X_16972215_INS [dm3] X_17078182_INS [dm6]	T	TATGCATT	2.220e^-4	0.945	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
2L	14009809	2L_14009809_SNP [dm3] 2L_14009809_SNP [dm6]	A	C	2.225e^-4	0.945	DOWNSTREAM CG42692 & 1 other INTERGENIC
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	2.227e^-4	0.945	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	4239247	2L_4239247_SNP [dm3] 2L_4239247_SNP [dm6]	C	A	2.231e^-4	0.945	DOWNSTREAM CR45720 INTERGENIC
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	2.232e^-4	0.945	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	711140	2L_711140_SNP [dm3] 2L_711140_SNP [dm6]	A	C	2.243e^-4	0.945	INTRON ds & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19277239	3L_19277239_SNP [dm3] 3L_19284139_SNP [dm6]	G	A	2.245e^-4	0.945	NON_SYNONYMOUS_CODING Gbs-76A	TF binding site mE1_TFBS_cad
2R	12764640	2R_12764640_SNP [dm3] 2R_16877135_SNP [dm6]	A	G	2.248e^-4	0.945	SYNONYMOUS_CODING CG8910	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	2.248e^-4	0.945	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	2.255e^-4	0.945	SYNONYMOUS_CODING kel UTR_3_PRIME kel
2R	5340729	2R_5340729_SNP [dm3] 2R_9453224_SNP [dm6]	C	A	2.255e^-4	0.945	DOWNSTREAM CG33758 INTRON Camta
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	2.263e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	2.268e^-4	0.945	INTRON beat-VII
3R	16385328	3R_16385328_SNP [dm3] 3R_20559606_SNP [dm6]	A	T	2.270e^-4	0.945	UTR_3_PRIME CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	11244378	2L_11244378_SNP [dm3] 2L_11244378_SNP [dm6]	A	T	2.273e^-4	0.945	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	2.273e^-4	0.945	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	2.278e^-4	0.945	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	3861269	2L_3861269_SNP [dm3] 2L_3861269_SNP [dm6]	G	T	2.289e^-4	0.945	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5045283	X_5045283_SNP [dm3] X_5151250_SNP [dm6]	A	G	2.290e^-4	0.945	INTRON rg & 1 other
3L	18197148	3L_18197148_SNP [dm3] 3L_18204048_SNP [dm6]	A	T	2.292e^-4	0.945	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	2.297e^-4	0.945	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
X	17429647	X_17429647_SNP [dm3] X_17535614_SNP [dm6]	T	A	2.319e^-4	0.945	INTRON CG43658
3L	11094710	3L_11094710_SNP [dm3] 3L_11101610_SNP [dm6]	C	T	2.324e^-4	0.945	SYNONYMOUS_CODING Elo68beta DOWNSTREAM Elo68alpha
3R	25762240	3R_25762240_SNP [dm3] 3R_29936518_SNP [dm6]	G	A	2.324e^-4	0.945	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16383076	3R_16383076_SNP [dm3] 3R_20557354_SNP [dm6]	T	C	2.331e^-4	0.945	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	2.332e^-4	0.945	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	4624631	2L_4624631_SNP [dm3] 2L_4624631_SNP [dm6]	C	G	2.334e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16041639	3R_16041639_SNP [dm3] 3R_20215917_SNP [dm6]	G	C	2.345e^-4	0.945	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2R	5340714	2R_5340714_SNP [dm3] 2R_9453209_SNP [dm6]	G	C	2.348e^-4	0.945	DOWNSTREAM CG33758 INTRON Camta
3R	22548129	3R_22548129_SNP [dm3] 3R_26722407_SNP [dm6]	G	C	2.356e^-4	0.945	SYNONYMOUS_CODING CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	21221973	3L_21221973_SNP [dm3] 3L_21228873_SNP [dm6]	C	A	2.367e^-4	0.945	INTRON Eip78C
2L	10469082	2L_10469082_SNP [dm3] 2L_10469082_SNP [dm6]	G	A	2.372e^-4	0.945	INTRON RluA-1
2L	2441559	2L_2441559_SNP [dm3] 2L_2441559_SNP [dm6]	T	C	2.382e^-4	0.945	INTRON dpp	regulatory region REDfly_CRMs
2L	10871948	2L_10871948_INS [dm3] 2L_10871948_INS [dm6]	T	TT	2.386e^-4	0.945	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2L	18288396	2L_18288396_SNP [dm3] 2L_18288396_SNP [dm6]	A	G	2.388e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	7399725	2R_7399725_SNP [dm3] 2R_11512220_SNP [dm6]	G	C	2.396e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12990834	3R_12990834_SNP [dm3] 3R_17165112_SNP [dm6]	T	A	2.400e^-4	0.945	INTRON Mur89F
2L	12353527	2L_12353527_SNP [dm3] 2L_12353527_SNP [dm6]	G	A	2.401e^-4	0.945	INTRON bru-2
3L	11853225	3L_11853225_SNP [dm3] 3L_11860125_SNP [dm6]	A	C	2.415e^-4	0.945	INTRON CG44837
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	2.417e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	11474564	2R_11474564_SNP [dm3] 2R_15587059_SNP [dm6]	T	C	2.420e^-4	0.945	INTERGENIC
2L	4955214	2L_4955214_SNP [dm3] 2L_4955214_SNP [dm6]	A	G	2.435e^-4	0.945	UPSTREAM Marcal1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	6321928	2R_6321928_SNP [dm3] 2R_10434423_SNP [dm6]	C	T	2.436e^-4	0.945	SPLICE_SITE_REGION RanBPM INTRON RanBPM
X	13035336	X_13035336_SNP [dm3] X_13141303_SNP [dm6]	G	A	2.447e^-4	0.945	INTRON CG32645
3R	19625641	3R_19625641_SNP [dm3] 3R_23799919_SNP [dm6]	G	A	2.450e^-4	0.945	SYNONYMOUS_CODING mbc
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	2.451e^-4	0.945	INTERGENIC
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	2.457e^-4	0.945	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	406009	X_406009_SNP [dm3] X_511976_SNP [dm6]	T	C	2.462e^-4	0.945	UTR_3_PRIME elav INTRON arg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23829125	3R_23829125_SNP [dm3] 3R_28003403_SNP [dm6]	G	A	2.464e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6381153	X_6381153_SNP [dm3] X_6487120_SNP [dm6]	G	T	2.474e^-4	0.945	INTRON CG42340
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	2.482e^-4	0.945	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	16579314	2R_16579314_SNP [dm3] 2R_20691809_SNP [dm6]	C	A	2.489e^-4	0.945	UPSTREAM CR44659 INTERGENIC
3R	14221887	3R_14221887_SNP [dm3] 3R_18396165_SNP [dm6]	C	A	2.490e^-4	0.945	UPSTREAM CG44009 INTRON Vha100-2	TF binding site BDTNP1_TFBS_dl
3R	26013975	3R_26013975_SNP [dm3] 3R_30188253_SNP [dm6]	G	C	2.493e^-4	0.945	INTRON CG9747
2L	715934	2L_715934_SNP [dm3] 2L_715934_SNP [dm6]	A	C	2.494e^-4	0.945	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	712475	2L_712475_SNP [dm3] 2L_712475_SNP [dm6]	A	G	2.497e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22549192	3R_22549192_SNP [dm3] 3R_26723470_SNP [dm6]	T	C	2.510e^-4	0.945	INTRON CG6420
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	2.510e^-4	0.945	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	3862928	X_3862928_SNP [dm3] X_3968895_SNP [dm6]	T	G	2.519e^-4	0.945	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	14022550	3L_14022550_SNP [dm3] 3L_14029450_SNP [dm6]	G	A	2.531e^-4	0.945	UPSTREAM ptip DOWNSTREAM endos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	2.533e^-4	0.945	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	2.545e^-4	0.945	INTRON mbc
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	2.556e^-4	0.945	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	2.556e^-4	0.945	INTRON CG15465 & 1 other
2L	14009807	2L_14009807_SNP [dm3] 2L_14009807_SNP [dm6]	T	A	2.559e^-4	0.945	DOWNSTREAM CG42692 & 1 other INTERGENIC
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	2.567e^-4	0.945	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19110189	2R_19110189_SNP [dm3] 2R_23222666_SNP [dm6]	C	A	2.568e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	19110190	2R_19110190_SNP [dm3] 2R_23222667_SNP [dm6]	A	C	2.568e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4040248	2L_4040248_SNP [dm3] 2L_4040248_SNP [dm6]	T	G	2.569e^-4	0.945	INTRON ed
3R	26656881	3R_26656881_SNP [dm3] 3R_30831159_SNP [dm6]	T	C	2.569e^-4	0.945	INTRON CG15544
2R	19545653	2R_19545653_SNP [dm3] 2R_23658130_SNP [dm6]	A	G	2.569e^-4	0.945	INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3071939	2R_3071939_SNP [dm3] 2R_7184434_SNP [dm6]	G	C	2.570e^-4	0.945	SYNONYMOUS_CODING CG30384 INTRON pk	TF binding site mE1_TFBS_chinmo
3L	2868383	3L_2868383_SNP [dm3] 3L_2868383_SNP [dm6]	A	C	2.570e^-4	0.945	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	13677731	X_13677731_SNP [dm3] X_13783698_SNP [dm6]	C	T	2.572e^-4	0.945	UPSTREAM inaE DOWNSTREAM CG11103 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2662300	3L_2662300_SNP [dm3] 3L_2662300_SNP [dm6]	C	T	2.573e^-4	0.945	DOWNSTREAM CG33233 INTRON Fife & 1 other
3R	25463591	3R_25463591_SNP [dm3] 3R_29637869_SNP [dm6]	C	T	2.576e^-4	0.945	INTRON Dop1R2
3L	1326592	3L_1326592_SNP [dm3] 3L_1326592_SNP [dm6]	A	G	2.584e^-4	0.945	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	2.585e^-4	0.945	INTRON CG34114
3R	11344730	3R_11344730_SNP [dm3] 3R_15519008_SNP [dm6]	T	C	2.592e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25739953	3R_25739953_SNP [dm3] 3R_29914231_SNP [dm6]	A	G	2.600e^-4	0.945	SYNONYMOUS_CODING Capa DOWNSTREAM trp
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	2.605e^-4	0.945	UPSTREAM Ndae1 INTRON Ndae1
2L	6008968	2L_6008968_SNP [dm3] 2L_6008968_SNP [dm6]	T	G	2.628e^-4	0.945	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2R	16848237	2R_16848237_SNP [dm3] 2R_20960732_SNP [dm6]	G	A	2.634e^-4	0.945	UTR_5_PRIME hbn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	11414632	3L_11414632_SNP [dm3] 3L_11421532_SNP [dm6]	A	C	2.639e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14389610	2L_14389610_SNP [dm3] 2L_14389610_SNP [dm6]	A	G	2.644e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	18293802	2L_18293802_SNP [dm3] 2L_18293802_SNP [dm6]	A	C	2.648e^-4	0.945	DOWNSTREAM Sfp36F EXON CR43358
2L	18293810	2L_18293810_SNP [dm3] 2L_18293810_SNP [dm6]	T	C	2.648e^-4	0.945	DOWNSTREAM Sfp36F EXON CR43358
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	2.649e^-4	0.945	INTRON CG34362
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	2.655e^-4	0.945	DOWNSTREAM CG6481 & 1 other INTRON Bx
2L	12321185	2L_12321185_SNP [dm3] 2L_12321185_SNP [dm6]	G	T	2.655e^-4	0.945	INTERGENIC
3R	26241284	3R_26241284_SNP [dm3] 3R_30415562_SNP [dm6]	G	A	2.657e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	1420811	3L_1420811_SNP [dm3] 3L_1420811_SNP [dm6]	A	G	2.664e^-4	0.945	DOWNSTREAM CG9173 INTRON Ptp61F
3R	27037106	3R_27037106_SNP [dm3] 3R_31211384_SNP [dm6]	T	C	2.682e^-4	0.945	SYNONYMOUS_CODING Zwilch UPSTREAM chp
3R	26036488	3R_26036488_SNP [dm3] 3R_30210766_SNP [dm6]	C	G	2.685e^-4	0.945	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	2.690e^-4	0.945	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
2L	3084820	2L_3084820_SNP [dm3] 2L_3084820_SNP [dm6]	G	A	2.699e^-4	0.945	INTRON toc
3L	16717120	3L_16717120_SNP [dm3] 3L_16724020_SNP [dm6]	T	C	2.702e^-4	0.945	UTR_3_PRIME Dab UPSTREAM CG13031 DOWNSTREAM CG13026
3R	24879885	3R_24879885_SNP [dm3] 3R_29054163_SNP [dm6]	C	G	2.703e^-4	0.945	UPSTREAM CG11843 DOWNSTREAM CG11842 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15080457	3R_15080457_SNP [dm3] 3R_19254735_SNP [dm6]	T	C	2.704e^-4	0.945	INTERGENIC
3R	4426896	3R_4426896_SNP [dm3] 3R_8601174_SNP [dm6]	G	C	2.709e^-4	0.945	INTRON 5-HT2B
2R	9502337	2R_9502337_SNP [dm3] 2R_13614832_SNP [dm6]	T	C	2.709e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23889911	3R_23889911_SNP [dm3] 3R_28064189_SNP [dm6]	G	A	2.711e^-4	0.945	INTRON CG34362
2R	11393016	2R_11393016_SNP [dm3] 2R_15505511_SNP [dm6]	C	A	2.718e^-4	0.945	SYNONYMOUS_CODING Ir52c
2L	1953771	2L_1953771_SNP [dm3] 2L_1953771_SNP [dm6]	C	A	2.724e^-4	0.945	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1446757	3R_1446757_SNP [dm3] 3R_5621035_SNP [dm6]	G	A	2.730e^-4	0.945	INTRON Spec2	TF binding site mE1_TFBS_inv
3R	24201922	3R_24201922_SNP [dm3] 3R_28376200_SNP [dm6]	G	A	2.734e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_sbb
2L	18150399	2L_18150399_SNP [dm3] 2L_18150399_SNP [dm6]	T	G	2.739e^-4	0.945	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	874821	3L_874821_SNP [dm3] 3L_874821_SNP [dm6]	C	T	2.762e^-4	0.945	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	2.767e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	5427735	2R_5427735_SNP [dm3] 2R_9540230_SNP [dm6]	A	G	2.773e^-4	0.945	UTR_3_PRIME brp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12076920	3R_12076920_SNP [dm3] 3R_16251198_SNP [dm6]	C	G	2.787e^-4	0.945	INTRON tara	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	2.795e^-4	0.945	INTRON dpr3
2L	6148729	2L_6148729_DEL [dm3] 2L_6148729_DEL [dm6]	AC	A	2.808e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
4	504402	4_504402_DEL [dm3] 4_483776_DEL [dm6]	GG	G	2.817e^-4	0.945	UTR_5_PRIME Asator INTRON Asator
3L	8065900	3L_8065900_SNP [dm3] 3L_8072800_SNP [dm6]	A	T	2.822e^-4	0.945	INTRON Ect4
2L	5849407	2L_5849407_SNP [dm3] 2L_5849407_SNP [dm6]	T	A	2.824e^-4	0.945	INTRON TrissinR
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	2.827e^-4	0.945	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
X	16776237	X_16776237_SNP [dm3] X_16882204_SNP [dm6]	T	C	2.830e^-4	0.945	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1438916	2R_1438916_INS [dm3] 2R_5551411_INS [dm6]	A	AAGATT	2.844e^-4	0.945	INTERGENIC	transposable element FlyBase
3R	13649188	3R_13649188_SNP [dm3] 3R_17823466_SNP [dm6]	A	G	2.845e^-4	0.945	INTRON tinc
2L	10871924	2L_10871924_SNP [dm3] 2L_10871924_SNP [dm6]	T	A	2.848e^-4	0.945	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
X	3184937	X_3184937_DEL [dm3] X_3290904_DEL [dm6]	AA	G	2.849e^-4	0.945	UPSTREAM dnc INTRON dnc
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	2.863e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	2.864e^-4	0.945	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4213428	2L_4213428_SNP [dm3] 2L_4213428_SNP [dm6]	G	A	2.866e^-4	0.945	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23877951	3R_23877951_SNP [dm3] 3R_28052229_SNP [dm6]	G	T	2.868e^-4	0.945	INTRON CG34362
3L	14630278	3L_14630278_SNP [dm3] 3L_14637178_SNP [dm6]	A	C	2.876e^-4	0.945	INTRON dlp	TF binding site BDTNP1_TFBS_dl
2L	8708346	2L_8708346_SNP [dm3] 2L_8708346_SNP [dm6]	C	T	2.878e^-4	0.945	DOWNSTREAM CG9314 INTRON Hnf4
2L	6020479	2L_6020479_SNP [dm3] 2L_6020479_SNP [dm6]	T	C	2.881e^-4	0.945	UPSTREAM CG13996 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18414658	X_18414658_SNP [dm3] X_18520625_SNP [dm6]	A	T	2.886e^-4	0.945	DOWNSTREAM CG6481 & 1 other INTRON Bx
X	5605481	X_5605481_SNP [dm3] X_5711448_SNP [dm6]	C	G	2.890e^-4	0.945	INTRON CG33080	TF binding site mE1_TFBS_ftz_f1
3L	1361603	3L_1361603_DEL [dm3] 3L_1361603_DEL [dm6]	CTATTTCCAAGC...	C	2.897e^-4	0.945	INTRON Ptp61F
2L	2439159	2L_2439159_SNP [dm3] 2L_2439159_SNP [dm6]	T	C	2.898e^-4	0.945	INTRON dpp	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	6027654	2L_6027654_SNP [dm3] 2L_6027654_SNP [dm6]	T	G	2.903e^-4	0.945	INTRON CG9109
X	5701676	X_5701676_SNP [dm3] X_5807643_SNP [dm6]	T	C	2.904e^-4	0.945	INTERGENIC
3R	22520123	3R_22520123_SNP [dm3] 3R_26694401_SNP [dm6]	A	C	2.906e^-4	0.945	UPSTREAM TwdlQ INTERGENIC
3R	22520127	3R_22520127_SNP [dm3] 3R_26694405_SNP [dm6]	C	T	2.906e^-4	0.945	UPSTREAM TwdlQ INTERGENIC
2R	11437594	2R_11437594_SNP [dm3] 2R_15550089_SNP [dm6]	G	A	2.909e^-4	0.945	UPSTREAM CG8192 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	1089084	2L_1089084_SNP [dm3] 2L_1089084_SNP [dm6]	G	A	2.919e^-4	0.945	INTRON CG4629
2L	18141904	2L_18141904_SNP [dm3] 2L_18141904_SNP [dm6]	G	A	2.925e^-4	0.945	SYNONYMOUS_CODING Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7829730	2R_7829730_SNP [dm3] 2R_11942225_SNP [dm6]	C	T	2.929e^-4	0.945	INTRON CG13188
X	19780246	X_19780246_INS [dm3] X_19886213_INS [dm6]	G	GG	2.935e^-4	0.945	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	5045191	X_5045191_SNP [dm3] X_5151158_SNP [dm6]	T	A	2.947e^-4	0.945	INTRON rg & 1 other
3R	20844011	3R_20844011_SNP [dm3] 3R_25018289_SNP [dm6]	A	T	2.951e^-4	0.945	NON_SYNONYMOUS_CODING tnc
2L	2433253	2L_2433253_SNP [dm3] 2L_2433253_SNP [dm6]	T	C	2.955e^-4	0.945	INTRON dpp
2L	12376550	2L_12376550_SNP [dm3] 2L_12376550_SNP [dm6]	G	C	2.960e^-4	0.945	INTRON bru-2
X	16723338	X_16723338_SNP [dm3] X_16829305_SNP [dm6]	C	T	2.964e^-4	0.945	INTRON CG13004
X	10069111	X_10069111_SNP [dm3] X_10175078_SNP [dm6]	A	G	2.971e^-4	0.945	INTRON CG43902 & 1 other
X	2346939	X_2346939_SNP [dm3] X_2452906_SNP [dm6]	C	T	2.976e^-4	0.945	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26031253	3R_26031253_SNP [dm3] 3R_30205531_SNP [dm6]	A	C	2.982e^-4	0.945	DOWNSTREAM RpS7 INTERGENIC
3L	6641171	3L_6641171_SNP [dm3] 3L_6648071_SNP [dm6]	A	G	2.984e^-4	0.945	INTERGENIC
2L	10871925	2L_10871925_SNP [dm3] 2L_10871925_SNP [dm6]	T	A	2.994e^-4	0.945	UPSTREAM CR45454 DOWNSTREAM CR45453 INTERGENIC
2L	1089672	2L_1089672_SNP [dm3] 2L_1089672_SNP [dm6]	T	C	2.999e^-4	0.945	INTRON CG4629	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16702525	3R_16702525_SNP [dm3] 3R_20876803_SNP [dm6]	C	T	3.002e^-4	0.945	UPSTREAM TotZ INTERGENIC
3R	1398410	3R_1398410_SNP [dm3] 3R_5572688_SNP [dm6]	G	T	3.003e^-4	0.945	INTRON CRMP
2L	1953779	2L_1953779_INS [dm3] 2L_1953779_INS [dm6]	G	GCGG	3.008e^-4	0.945	INTRON erm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18282399	2L_18282399_SNP [dm3] 2L_18282399_SNP [dm6]	T	A	3.010e^-4	0.945	INTERGENIC
X	12290477	X_12290477_SNP [dm3] X_12396444_SNP [dm6]	C	A	3.012e^-4	0.945	INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	3.012e^-4	0.945	SYNONYMOUS_CODING S-Lap2
2R	7798461	2R_7798461_SNP [dm3] 2R_11910956_SNP [dm6]	A	T	3.015e^-4	0.945	INTRON CG13183
3L	1879245	3L_1879245_SNP [dm3] 3L_1879245_SNP [dm6]	C	T	3.019e^-4	0.945	INTRON CG13937
3R	15166754	3R_15166754_SNP [dm3] 3R_19341032_SNP [dm6]	C	T	3.022e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24813324	3R_24813324_SNP [dm3] 3R_28987602_SNP [dm6]	G	A	3.025e^-4	0.945	INTERGENIC
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	3.025e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	3.025e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	3.025e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	3.025e^-4	0.945	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	15214865	3R_15214865_SNP [dm3] 3R_19389143_SNP [dm6]	C	T	3.027e^-4	0.945	SYNONYMOUS_CODING CG3734 INTRON Ino80	TF binding site mE1_TFBS_sens
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	3.034e^-4	0.945	INTERGENIC
3R	1420779	3R_1420779_DEL [dm3] 3R_5595057_DEL [dm6]	TAAGT	T	3.040e^-4	0.945	UTR_3_PRIME Vha26 DOWNSTREAM kra & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2L	12302704	2L_12302704_SNP [dm3] 2L_12302704_SNP [dm6]	G	A	3.040e^-4	0.945	INTRON aret
3L	751446	3L_751446_SNP [dm3] 3L_751446_SNP [dm6]	T	A	3.040e^-4	0.945	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13015100	3R_13015100_SNP [dm3] 3R_17189378_SNP [dm6]	T	C	3.044e^-4	0.945	INTRON Mur89F	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15558860	2R_15558860_SNP [dm3] 2R_19671355_SNP [dm6]	A	G	3.047e^-4	0.945	SPLICE_SITE_REGION isopeptidase-T-3 INTRON isopeptidase-T-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	6496009	X_6496009_SNP [dm3] X_6601976_SNP [dm6]	G	A	3.055e^-4	0.945	UPSTREAM pigs INTRON pigs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	18350403	X_18350403_SNP [dm3] X_18456370_SNP [dm6]	C	T	3.056e^-4	0.945	INTRON CG32547	TF binding site mE1_TFBS_h mE1_TFBS_HSA
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	3.056e^-4	0.945	INTRON CG9541
3R	26960276	3R_26960276_SNP [dm3] 3R_31134554_SNP [dm6]	C	T	3.070e^-4	0.945	START_GAINED Gycbeta100B UTR_5_PRIME Gycbeta100B
2L	8226548	2L_8226548_SNP [dm3] 2L_8226548_SNP [dm6]	G	A	3.075e^-4	0.945	SYNONYMOUS_CODING Pvr
3R	22549189	3R_22549189_SNP [dm3] 3R_26723467_SNP [dm6]	A	T	3.085e^-4	0.945	INTRON CG6420
3R	24743357	3R_24743357_SNP [dm3] 3R_28917635_SNP [dm6]	A	T	3.090e^-4	0.945	NON_SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7010930	2L_7010930_SNP [dm3] 2L_7010930_SNP [dm6]	A	T	3.090e^-4	0.945	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	3.090e^-4	0.945	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	3.091e^-4	0.945	INTERGENIC
X	19780254	X_19780254_SNP [dm3] X_19886221_SNP [dm6]	T	A	3.093e^-4	0.945	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2567599	X_2567599_SNP [dm3] X_2673566_SNP [dm6]	A	C	3.100e^-4	0.945	SYNONYMOUS_CODING sgg	TF binding site mE1_TFBS_chinmo
2R	7695074	2R_7695074_SNP [dm3] 2R_11807569_SNP [dm6]	A	G	3.102e^-4	0.945	INTRON ths
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	3.102e^-4	0.945	INTRON bbg
2R	1380767	2R_1380767_SNP [dm3] 2R_5493262_SNP [dm6]	T	A	3.123e^-4	0.945	INTRON CG30440
X	411374	X_411374_SNP [dm3] X_517341_SNP [dm6]	T	A	3.130e^-4	0.945	UTR_3_PRIME elav INTRON arg
2R	11580802	2R_11580802_SNP [dm3] 2R_15693297_SNP [dm6]	T	C	3.132e^-4	0.945	UPSTREAM CG33460 INTRON CG30087 EXON CR44372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
4	495389	4_495389_SNP [dm3] 4_474763_SNP [dm6]	A	G	3.132e^-4	0.945	SYNONYMOUS_CODING Asator UTR_3_PRIME Asator
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	3.139e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2224279	X_2224279_SNP [dm3] X_2330246_SNP [dm6]	A	G	3.154e^-4	0.945	INTRON phl EXON CR33218
X	2224288	X_2224288_SNP [dm3] X_2330255_SNP [dm6]	C	G	3.154e^-4	0.945	INTRON phl EXON CR33218
3R	25741397	3R_25741397_SNP [dm3] 3R_29915675_SNP [dm6]	A	G	3.168e^-4	0.945	SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24166357	3R_24166357_SNP [dm3] 3R_28340635_SNP [dm6]	T	C	3.180e^-4	0.945	SYNONYMOUS_CODING Moca-cyp UTR_5_PRIME Moca-cyp UPSTREAM Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7341713	2L_7341713_SNP [dm3] 2L_7341713_SNP [dm6]	A	T	3.183e^-4	0.945	INTRON Wnt6
2L	20879404	2L_20879404_SNP [dm3] 2L_20879404_SNP [dm6]	C	A	3.185e^-4	0.945	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA
3R	14352489	3R_14352489_SNP [dm3] 3R_18526767_SNP [dm6]	C	A	3.190e^-4	0.945	INTRON fru
3L	11699174	3L_11699174_SNP [dm3] 3L_11706074_SNP [dm6]	C	T	3.191e^-4	0.945	INTRON CG11658
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	3.206e^-4	0.945	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
2L	18293849	2L_18293849_SNP [dm3] 2L_18293849_SNP [dm6]	T	A	3.207e^-4	0.945	UPSTREAM CG5790 EXON CR43358
2R	11474494	2R_11474494_SNP [dm3] 2R_15586989_SNP [dm6]	A	G	3.213e^-4	0.945	INTERGENIC
2R	11779645	2R_11779645_SNP [dm3] 2R_15892140_SNP [dm6]	A	G	3.215e^-4	0.945	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	3.218e^-4	0.945	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	26935989	3R_26935989_SNP [dm3] 3R_31110267_SNP [dm6]	T	C	3.221e^-4	0.945	INTERGENIC
3R	14394850	3R_14394850_SNP [dm3] 3R_18569128_SNP [dm6]	C	A	3.229e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25992266	3R_25992266_SNP [dm3] 3R_30166544_SNP [dm6]	C	T	3.229e^-4	0.945	UPSTREAM CG31030 DOWNSTREAM CG31028 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3784836	2L_3784836_SNP [dm3] 2L_3784836_SNP [dm6]	A	T	3.231e^-4	0.945	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3R	25992182	3R_25992182_SNP [dm3] 3R_30166460_SNP [dm6]	C	T	3.231e^-4	0.945	UPSTREAM CG31030 DOWNSTREAM CG31028 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8658073	2L_8658073_SNP [dm3] 2L_8658073_SNP [dm6]	T	C	3.239e^-4	0.945	INTRON Sema-1a
X	17166930	X_17166930_SNP [dm3] X_17272897_SNP [dm6]	G	A	3.240e^-4	0.945	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad
2R	3633100	2R_3633100_SNP [dm3] 2R_7745595_SNP [dm6]	A	C	3.243e^-4	0.945	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	17309768	2L_17309768_SNP [dm3] 2L_17309768_SNP [dm6]	C	T	3.245e^-4	0.945	INTERGENIC
2L	4301848	2L_4301848_SNP [dm3] 2L_4301848_SNP [dm6]	C	G	3.245e^-4	0.945	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2441521	2L_2441521_SNP [dm3] 2L_2441521_SNP [dm6]	G	A	3.247e^-4	0.945	INTRON dpp	regulatory region REDfly_CRMs
2L	3784808	2L_3784808_SNP [dm3] 2L_3784808_SNP [dm6]	G	A	3.248e^-4	0.945	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
X	10286224	X_10286224_SNP [dm3] X_10392191_SNP [dm6]	A	T	3.249e^-4	0.945	INTRON flw
3R	23881837	3R_23881837_SNP [dm3] 3R_28056115_SNP [dm6]	T	G	3.251e^-4	0.945	INTRON CG34362
2L	1885844	2L_1885844_SNP [dm3] 2L_1885844_SNP [dm6]	C	T	3.254e^-4	0.945	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12039778	2R_12039778_SNP [dm3] 2R_16152273_SNP [dm6]	A	T	3.262e^-4	0.945	INTRON lbk	transposable element FlyBase
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	3.275e^-4	0.945	INTERGENIC
3R	18172870	3R_18172870_SNP [dm3] 3R_22347148_SNP [dm6]	A	T	3.283e^-4	0.945	INTERGENIC
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	3.287e^-4	0.945	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	3.288e^-4	0.945	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2L	2164943	2L_2164943_SNP [dm3] 2L_2164943_SNP [dm6]	T	C	3.291e^-4	0.945	INTRON aop	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	23301717	3R_23301717_SNP [dm3] 3R_27475995_SNP [dm6]	A	G	3.292e^-4	0.945	INTERGENIC
3L	3799408	3L_3799408_SNP [dm3] 3L_3799408_SNP [dm6]	C	T	3.293e^-4	0.945	INTRON CG32264
3R	14976110	3R_14976110_SNP [dm3] 3R_19150388_SNP [dm6]	G	A	3.298e^-4	0.945	DOWNSTREAM CR44107 INTRON CG5835
2L	8619912	2L_8619912_INS [dm3] 2L_8619912_INS [dm6]	A	AGTA	3.299e^-4	0.945	UPSTREAM tRNA:CR31602 INTRON Sema-1a
3R	14713575	3R_14713575_SNP [dm3] 3R_18887853_SNP [dm6]	C	T	3.300e^-4	0.945	INTERGENIC
2R	19241264	2R_19241264_SNP [dm3] 2R_23353741_SNP [dm6]	C	T	3.300e^-4	0.945	UPSTREAM CG30409 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15914361	2R_15914361_SNP [dm3] 2R_20026856_SNP [dm6]	C	T	3.304e^-4	0.945	INTERGENIC
X	16723313	X_16723313_SNP [dm3] X_16829280_SNP [dm6]	T	A	3.307e^-4	0.945	INTRON CG13004
X	16723314	X_16723314_SNP [dm3] X_16829281_SNP [dm6]	G	C	3.307e^-4	0.945	INTRON CG13004
4	404139	4_404139_SNP [dm3] 4_383513_SNP [dm6]	C	G	3.309e^-4	0.945	INTRON Lin29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
2R	20356073	2R_20356073_SNP [dm3] 2R_24468550_SNP [dm6]	T	C	3.311e^-4	0.945	INTRON CG13579
X	16878191	X_16878191_DEL [dm3] X_16984158_DEL [dm6]	AG	A	3.316e^-4	0.945	INTRON CG45002
2R	14859714	2R_14859714_SNP [dm3] 2R_18972209_SNP [dm6]	G	C	3.322e^-4	0.945	UPSTREAM Topors INTRON CG15107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	12529304	3L_12529304_SNP [dm3] 3L_12536204_SNP [dm6]	A	C	3.325e^-4	0.945	DOWNSTREAM CG10688 INTRON CG4069	TF binding site mE1_TFBS_cad
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	3.328e^-4	0.945	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	16751325	X_16751325_SNP [dm3] X_16857292_SNP [dm6]	A	T	3.336e^-4	0.945	INTRON CG13003
3L	12486748	3L_12486748_DEL [dm3] 3L_12493648_DEL [dm6]	AA	A	3.340e^-4	0.945	DOWNSTREAM CR45682 INTRON CG10657
X	3862895	X_3862895_SNP [dm3] X_3968862_SNP [dm6]	T	C	3.341e^-4	0.945	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	8713016	2L_8713016_SNP [dm3] 2L_8713016_SNP [dm6]	A	T	3.349e^-4	0.945	SYNONYMOUS_CODING raw
2L	13021469	2L_13021469_SNP [dm3] 2L_13021469_SNP [dm6]	A	G	3.363e^-4	0.945	UPSTREAM A16 DOWNSTREAM CG9932 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15474997	X_15474997_SNP [dm3] X_15580964_SNP [dm6]	C	A	3.376e^-4	0.945	UTR_3_PRIME CG9215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10456258	2L_10456258_SNP [dm3] 2L_10456258_SNP [dm6]	T	C	3.386e^-4	0.945	UPSTREAM CG5322 INTRON CG5322
3R	12689075	3R_12689075_SNP [dm3] 3R_16863353_SNP [dm6]	A	G	3.398e^-4	0.945	INTRON iab-8
2R	12699783	2R_12699783_SNP [dm3] 2R_16812278_SNP [dm6]	T	A	3.401e^-4	0.945	EXON CR44379
X	2689961	X_2689961_DEL [dm3] X_2795928_DEL [dm6]	AGAAT	A	3.402e^-4	0.945	INTRON kirre & 1 other	regulatory region REDfly_CRMs
3L	11798442	3L_11798442_SNP [dm3] 3L_11805342_SNP [dm6]	G	A	3.404e^-4	0.945	SYNONYMOUS_CODING CG42255
2L	18143454	2L_18143454_SNP [dm3] 2L_18143454_SNP [dm6]	A	G	3.409e^-4	0.945	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4375694	3L_4375694_SNP [dm3] 3L_4375694_SNP [dm6]	T	C	3.426e^-4	0.945	INTRON DopEcR
2L	10549254	2L_10549254_SNP [dm3] 2L_10549254_SNP [dm6]	C	T	3.429e^-4	0.945	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9510649	3L_9510649_SNP [dm3] 3L_9517549_SNP [dm6]	C	T	3.431e^-4	0.945	INTRON CG33700
2R	9523880	2R_9523880_SNP [dm3] 2R_13636375_SNP [dm6]	G	A	3.433e^-4	0.945	INTRON fas
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	3.438e^-4	0.945	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	3.438e^-4	0.945	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	3.438e^-4	0.945	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	26754871	3R_26754871_SNP [dm3] 3R_30929149_SNP [dm6]	T	C	3.445e^-4	0.945	SYNONYMOUS_CODING Ptx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	17858853	2L_17858853_SNP [dm3] 2L_17858853_SNP [dm6]	A	G	3.448e^-4	0.945	INTRON CadN2
3L	15698985	3L_15698985_SNP [dm3] 3L_15705885_SNP [dm6]	G	T	3.449e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_sens
3R	6856799	3R_6856799_SNP [dm3] 3R_11031077_SNP [dm6]	G	T	3.449e^-4	0.945	INTRON CG34114
2L	14009811	2L_14009811_SNP [dm3] 2L_14009811_SNP [dm6]	T	A	3.451e^-4	0.945	DOWNSTREAM CG42692 & 1 other INTERGENIC
3L	14417953	3L_14417953_SNP [dm3] 3L_14424853_SNP [dm6]	A	T	3.451e^-4	0.945	INTRON bbg
3L	18197253	3L_18197253_SNP [dm3] 3L_18204153_SNP [dm6]	C	G	3.456e^-4	0.945	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25994203	3R_25994203_SNP [dm3] 3R_30168481_SNP [dm6]	T	A	3.458e^-4	0.945	NON_SYNONYMOUS_CODING CG31028	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	3.463e^-4	0.945	INTRON Ncc69
2R	18540092	2R_18540092_SNP [dm3] 2R_22652587_SNP [dm6]	T	G	3.463e^-4	0.945	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	18540095	2R_18540095_DEL [dm3] 2R_22652590_DEL [dm6]	TCA	T	3.463e^-4	0.945	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	22515239	3R_22515239_SNP [dm3] 3R_26689517_SNP [dm6]	G	T	3.467e^-4	0.945	INTERGENIC
3R	26009192	3R_26009192_SNP [dm3] 3R_30183470_SNP [dm6]	T	C	3.468e^-4	0.945	DOWNSTREAM CR44262 INTERGENIC
3R	26001353	3R_26001353_SNP [dm3] 3R_30175631_SNP [dm6]	C	A	3.471e^-4	0.945	DOWNSTREAM CG1983 INTERGENIC	regulatory region REDfly_CRMs
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	3.475e^-4	0.945	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	3.475e^-4	0.945	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	25741376	3R_25741376_SNP [dm3] 3R_29915654_SNP [dm6]	G	A	3.477e^-4	0.945	NON_SYNONYMOUS_CODING trp UTR_3_PRIME trp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16388576	3R_16388576_SNP [dm3] 3R_20562854_SNP [dm6]	T	G	3.477e^-4	0.945	SYNONYMOUS_CODING CG10877 INTRON CG5191	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7375228	2R_7375228_SNP [dm3] 2R_11487723_SNP [dm6]	T	C	3.480e^-4	0.945	INTRON inv
X	12146986	X_12146986_SNP [dm3] X_12252953_SNP [dm6]	G	C	3.488e^-4	0.945	INTRON Ten-a
2R	20357006	2R_20357006_SNP [dm3] 2R_24469483_SNP [dm6]	A	G	3.497e^-4	0.945	INTRON CG13579
2R	15903566	2R_15903566_SNP [dm3] 2R_20016061_SNP [dm6]	C	G	3.508e^-4	0.945	DOWNSTREAM CR44630 INTERGENIC
2R	1487348	2R_1487348_SNP [dm3] 2R_5599843_SNP [dm6]	T	A	3.511e^-4	0.945	INTERGENIC	transposable element FlyBase
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	3.513e^-4	0.945	UPSTREAM para INTERGENIC
2R	16151711	2R_16151711_SNP [dm3] 2R_20264206_SNP [dm6]	T	C	3.519e^-4	0.945	UPSTREAM plu & 1 other DOWNSTREAM CR43812 INTRON RpS18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8935771	2R_8935771_SNP [dm3] 2R_13048266_SNP [dm6]	T	C	3.522e^-4	0.945	DOWNSTREAM CG13324 INTERGENIC
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	3.529e^-4	0.945	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
3L	656304	3L_656304_SNP [dm3] 3L_656304_SNP [dm6]	A	C	3.541e^-4	0.945	SYNONYMOUS_CODING Rev1
3R	18063306	3R_18063306_SNP [dm3] 3R_22237584_SNP [dm6]	G	A	3.544e^-4	0.945	INTRON SKIP
3R	16385063	3R_16385063_SNP [dm3] 3R_20559341_SNP [dm6]	C	T	3.554e^-4	0.945	SYNONYMOUS_CODING CG5180 DOWNSTREAM CG15922	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	10287152	2R_10287152_SNP [dm3] 2R_14399647_SNP [dm6]	T	C	3.555e^-4	0.945	INTERGENIC
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	3.556e^-4	0.945	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2L	18151861	2L_18151861_SNP [dm3] 2L_18151861_SNP [dm6]	A	G	3.562e^-4	0.945	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
3R	12993292	3R_12993292_SNP [dm3] 3R_17167570_SNP [dm6]	T	A	3.568e^-4	0.945	INTRON Mur89F
3R	24764078	3R_24764078_SNP [dm3] 3R_28938356_SNP [dm6]	C	T	3.570e^-4	0.945	INTRON CG14521
3R	15163581	3R_15163581_SNP [dm3] 3R_19337859_SNP [dm6]	T	C	3.575e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	3.581e^-4	0.945	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
3R	25990477	3R_25990477_SNP [dm3] 3R_30164755_SNP [dm6]	T	C	3.591e^-4	0.945	UTR_3_PRIME CG31030
2L	7768681	2L_7768681_SNP [dm3] 2L_7768681_SNP [dm6]	A	T	3.596e^-4	0.945	INTRON CG7191
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	3.614e^-4	0.945	UPSTREAM CG5890 INTRON CG5890
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	3.614e^-4	0.945	INTRON CG9850
2R	15556019	2R_15556019_SNP [dm3] 2R_19668514_SNP [dm6]	A	G	3.617e^-4	0.945	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	3.617e^-4	0.945	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
3R	27037235	3R_27037235_SNP [dm3] 3R_31211513_SNP [dm6]	G	A	3.619e^-4	0.945	SYNONYMOUS_CODING Zwilch UPSTREAM chp
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	3.621e^-4	0.945	UTR_3_PRIME dpr3
2R	8326829	2R_8326829_SNP [dm3] 2R_12439324_SNP [dm6]	A	G	3.633e^-4	0.945	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14903320	3R_14903320_SNP [dm3] 3R_19077598_SNP [dm6]	G	A	3.634e^-4	0.945	INTRON cdi
2R	7786950	2R_7786950_SNP [dm3] 2R_11899445_SNP [dm6]	G	T	3.637e^-4	0.945	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12246796	2L_12246796_SNP [dm3] 2L_12246796_SNP [dm6]	A	G	3.643e^-4	0.945	INTRON aret
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	3.644e^-4	0.945	INTERGENIC
2R	17505265	2R_17505265_SNP [dm3] 2R_21617760_SNP [dm6]	A	G	3.648e^-4	0.945	SYNONYMOUS_CODING clt UPSTREAM CG18870	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	22901013	3R_22901013_SNP [dm3] 3R_27075291_SNP [dm6]	T	A	3.648e^-4	0.945	UPSTREAM CG14257 INTERGENIC
X	16723326	X_16723326_SNP [dm3] X_16829293_SNP [dm6]	T	C	3.652e^-4	0.945	INTRON CG13004
2R	7410569	2R_7410569_SNP [dm3] 2R_11523064_SNP [dm6]	C	A	3.663e^-4	0.945	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	19660044	2R_19660044_SNP [dm3] 2R_23772521_SNP [dm6]	C	T	3.672e^-4	0.945	INTRON CG9850
2L	7768714	2L_7768714_SNP [dm3] 2L_7768714_SNP [dm6]	T	A	3.674e^-4	0.945	INTRON CG7191
2L	4156739	2L_4156739_SNP [dm3] 2L_4156739_SNP [dm6]	C	T	3.676e^-4	0.945	INTERGENIC
3R	19399942	3R_19399942_SNP [dm3] 3R_23574220_SNP [dm6]	C	T	3.680e^-4	0.945	INTRON beat-IV	TF binding site mE1_TFBS_chinmo
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	3.680e^-4	0.945	INTRON bbg
3R	27036961	3R_27036961_SNP [dm3] 3R_31211239_SNP [dm6]	G	A	3.688e^-4	0.945	SYNONYMOUS_CODING Zwilch UPSTREAM chp
3R	24764127	3R_24764127_SNP [dm3] 3R_28938405_SNP [dm6]	T	C	3.693e^-4	0.945	INTRON CG14521
2R	17929116	2R_17929116_SNP [dm3] 2R_22041611_SNP [dm6]	C	G	3.700e^-4	0.945	DOWNSTREAM PpD5 INTERGENIC
X	2620098	X_2620098_SNP [dm3] X_2726065_SNP [dm6]	T	A	3.703e^-4	0.945	NON_SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16383064	3R_16383064_SNP [dm3] 3R_20557342_SNP [dm6]	A	T	3.714e^-4	0.945	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	16383098	3R_16383098_SNP [dm3] 3R_20557376_SNP [dm6]	C	T	3.714e^-4	0.945	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
3R	16383118	3R_16383118_SNP [dm3] 3R_20557396_SNP [dm6]	C	T	3.714e^-4	0.945	UPSTREAM CG5180 INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16383611	3R_16383611_SNP [dm3] 3R_20557889_SNP [dm6]	A	T	3.714e^-4	0.945	UPSTREAM CG5180 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	16384146	3R_16384146_SNP [dm3] 3R_20558424_SNP [dm6]	A	G	3.714e^-4	0.945	SYNONYMOUS_CODING CG5180 UPSTREAM att-ORFA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	21045695	3L_21045695_INS [dm3] 3L_21052595_INS [dm6]	T	TTTT	3.721e^-4	0.945	INTRON siz	TF binding site BDTNP1_TFBS_dl
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	3.725e^-4	0.945	INTRON blow	TF binding site mE1_TFBS_chinmo
2R	6785385	2R_6785385_SNP [dm3] 2R_10897880_SNP [dm6]	G	T	3.726e^-4	0.945	UTR_5_PRIME CG7712 DOWNSTREAM Rpb5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
3R	14910846	3R_14910846_SNP [dm3] 3R_19085124_SNP [dm6]	A	G	3.742e^-4	0.945	INTRON cdi
3R	18338824	3R_18338824_SNP [dm3] 3R_22513102_SNP [dm6]	G	A	3.749e^-4	0.945	SYNONYMOUS_CODING Octbeta1R
2L	18132912	2L_18132912_SNP [dm3] 2L_18132912_SNP [dm6]	C	G	3.755e^-4	0.945	INTRON kel	TF binding site mE1_TFBS_cad
3R	3492384	3R_3492384_SNP [dm3] 3R_7666662_SNP [dm6]	T	C	3.763e^-4	0.945	INTRON Nlg1
2L	2441562	2L_2441562_SNP [dm3] 2L_2441562_SNP [dm6]	C	T	3.777e^-4	0.945	INTRON dpp	regulatory region REDfly_CRMs
3R	12991309	3R_12991309_SNP [dm3] 3R_17165587_SNP [dm6]	A	G	3.779e^-4	0.945	INTRON Mur89F
3L	16494889	3L_16494889_SNP [dm3] 3L_16501789_SNP [dm6]	C	T	3.797e^-4	0.945	DOWNSTREAM CG43373 INTRON CG43373
X	16723233	X_16723233_SNP [dm3] X_16829200_SNP [dm6]	A	G	3.798e^-4	0.945	INTRON CG13004
2R	6784055	2R_6784055_SNP [dm3] 2R_10896550_SNP [dm6]	A	G	3.809e^-4	0.945	SYNONYMOUS_CODING CG12942 DOWNSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	3.812e^-4	0.945	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22586607	3L_22586607_SNP [dm3] 3L_22593507_SNP [dm6]	A	G	3.822e^-4	0.945	INTRON CG14459
X	16723329	X_16723329_SNP [dm3] X_16829296_SNP [dm6]	A	C	3.823e^-4	0.945	INTRON CG13004
2L	712457	2L_712457_SNP [dm3] 2L_712457_SNP [dm6]	G	A	3.830e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	3.830e^-4	0.945	INTRON CG17600
2R	18540093	2R_18540093_SNP [dm3] 2R_22652588_SNP [dm6]	G	T	3.832e^-4	0.945	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	16883520	3R_16883520_SNP [dm3] 3R_21057798_SNP [dm6]	C	T	3.838e^-4	0.945	SYNONYMOUS_CODING Mvl	TF binding site mE1_TFBS_sens
3L	3009694	3L_3009694_SNP [dm3] 3L_3009694_SNP [dm6]	A	C	3.849e^-4	0.945	SYNONYMOUS_CODING FMRFaR
3R	1491726	3R_1491726_SNP [dm3] 3R_5666004_SNP [dm6]	T	A	3.862e^-4	0.945	DOWNSTREAM CG1109 INTRON Xe7
3R	5720631	3R_5720631_SNP [dm3] 3R_9894909_SNP [dm6]	A	G	3.871e^-4	0.945	INTRON Glut4EF	TF binding site mE1_TFBS_inv
X	5701703	X_5701703_SNP [dm3] X_5807670_SNP [dm6]	A	G	3.873e^-4	0.945	INTERGENIC
2R	11394210	2R_11394210_SNP [dm3] 2R_15506705_SNP [dm6]	C	A	3.875e^-4	0.945	NON_SYNONYMOUS_CODING Ir52d DOWNSTREAM Ir52c	TF binding site mE1_TFBS_HSA
X	5489798	X_5489798_SNP [dm3] X_5595765_SNP [dm6]	A	T	3.877e^-4	0.945	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	22516932	3R_22516932_SNP [dm3] 3R_26691210_SNP [dm6]	G	A	3.878e^-4	0.945	INTERGENIC
3L	16718294	3L_16718294_SNP [dm3] 3L_16725194_SNP [dm6]	C	T	3.878e^-4	0.945	SYNONYMOUS_CODING CG13031 UTR_3_PRIME CG13026 DOWNSTREAM Dab & 1 other
2L	4109437	2L_4109437_SNP [dm3] 2L_4109437_SNP [dm6]	C	T	3.881e^-4	0.945	INTRON ed
2R	7410324	2R_7410324_INS [dm3] 2R_11522819_INS [dm6]	T	TAATT	3.881e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3R	18132668	3R_18132668_SNP [dm3] 3R_22306946_SNP [dm6]	G	A	3.884e^-4	0.945	INTERGENIC
3R	3002145	3R_3002145_SNP [dm3] 3R_7176423_SNP [dm6]	G	T	3.890e^-4	0.945	INTRON sas
2L	14009761	2L_14009761_SNP [dm3] 2L_14009761_SNP [dm6]	G	C	3.892e^-4	0.945	DOWNSTREAM CG42692 & 1 other INTERGENIC
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	3.895e^-4	0.945	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	3.904e^-4	0.945	INTRON Ptp61F
2L	7341740	2L_7341740_SNP [dm3] 2L_7341740_SNP [dm6]	C	T	3.911e^-4	0.945	INTRON Wnt6
X	12146987	X_12146987_SNP [dm3] X_12252954_SNP [dm6]	C	T	3.912e^-4	0.945	INTRON Ten-a
2R	15451813	2R_15451813_SNP [dm3] 2R_19564308_SNP [dm6]	A	T	3.916e^-4	0.945	DOWNSTREAM tRNA:CR33535 INTRON sm
2L	12892011	2L_12892011_SNP [dm3] 2L_12892011_SNP [dm6]	A	G	3.916e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	712511	2L_712511_SNP [dm3] 2L_712511_SNP [dm6]	A	G	3.916e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11587085	X_11587085_SNP [dm3] X_11693052_SNP [dm6]	C	A	3.923e^-4	0.945	UTR_3_PRIME bif INTRON bif
3L	19632370	3L_19632370_SNP [dm3] 3L_19639270_SNP [dm6]	T	G	3.934e^-4	0.945	UTR_3_PRIME CG8786 DOWNSTREAM CG8786 INTRON CG8786
3R	21870529	3R_21870529_SNP [dm3] 3R_26044807_SNP [dm6]	T	A	3.934e^-4	0.945	INTRON gro
2R	10746708	2R_10746708_SNP [dm3] 2R_14859203_SNP [dm6]	G	A	3.955e^-4	0.945	UPSTREAM CG33506 INTRON U3-55K	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3R	26241310	3R_26241310_SNP [dm3] 3R_30415588_SNP [dm6]	G	T	3.962e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	26002248	3R_26002248_SNP [dm3] 3R_30176526_SNP [dm6]	G	A	3.962e^-4	0.945	SYNONYMOUS_CODING CG1983
2L	1362830	2L_1362830_SNP [dm3] 2L_1362830_SNP [dm6]	A	G	3.963e^-4	0.945	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10465280	2R_10465280_SNP [dm3] 2R_14577775_SNP [dm6]	C	T	3.964e^-4	0.945	INTRON ttv
X	16723252	X_16723252_SNP [dm3] X_16829219_SNP [dm6]	T	C	3.966e^-4	0.945	INTRON CG13004
2R	7414162	2R_7414162_SNP [dm3] 2R_11526657_SNP [dm6]	A	G	3.967e^-4	0.945	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5444736	X_5444736_SNP [dm3] X_5550703_SNP [dm6]	A	G	3.991e^-4	0.945	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	1491751	3R_1491751_SNP [dm3] 3R_5666029_SNP [dm6]	A	G	4.006e^-4	0.945	DOWNSTREAM CG1109 INTRON Xe7
X	994868	X_994868_INS [dm3] X_1100835_INS [dm6]	T	TTT	4.009e^-4	0.945	INTRON CG3655
2L	18308852	2L_18308852_SNP [dm3] 2L_18308852_SNP [dm6]	T	G	4.011e^-4	0.945	UPSTREAM CR44694 & 1 other DOWNSTREAM CG43354 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	5045193	X_5045193_SNP [dm3] X_5151160_SNP [dm6]	C	T	4.031e^-4	0.945	INTRON rg & 1 other
2R	11161908	2R_11161908_SNP [dm3] 2R_15274403_SNP [dm6]	C	T	4.032e^-4	0.945	INTRON Trpm
2R	1490196	2R_1490196_SNP [dm3] 2R_5602691_SNP [dm6]	G	C	4.035e^-4	0.945	DOWNSTREAM Fis1 INTERGENIC
3L	13372801	3L_13372801_SNP [dm3] 3L_13379701_SNP [dm6]	C	T	4.036e^-4	0.945	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16721435	X_16721435_SNP [dm3] X_16827402_SNP [dm6]	G	A	4.039e^-4	0.945	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
X	16721444	X_16721444_SNP [dm3] X_16827411_SNP [dm6]	G	T	4.039e^-4	0.945	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3R	26848424	3R_26848424_SNP [dm3] 3R_31022702_SNP [dm6]	A	T	4.047e^-4	0.945	INTERGENIC
2R	1487151	2R_1487151_SNP [dm3] 2R_5599646_SNP [dm6]	C	G	4.048e^-4	0.945	INTERGENIC	transposable element FlyBase
X	18414671	X_18414671_SNP [dm3] X_18520638_SNP [dm6]	C	T	4.061e^-4	0.945	DOWNSTREAM CG6481 & 1 other INTRON Bx
3L	19273852	3L_19273852_SNP [dm3] 3L_19280752_SNP [dm6]	C	G	4.064e^-4	0.945	NON_SYNONYMOUS_CODING CG14089 DOWNSTREAM CG14086 & 1 other
2L	4864962	2L_4864962_SNP [dm3] 2L_4864962_SNP [dm6]	A	T	4.065e^-4	0.945	INTRON pog
3R	25722177	3R_25722177_SNP [dm3] 3R_29896455_SNP [dm6]	G	A	4.068e^-4	0.945	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1382459	3R_1382459_SNP [dm3] 3R_5556737_SNP [dm6]	A	T	4.072e^-4	0.945	DOWNSTREAM Pi4KIIalpha INTRON Snm1
X	14155398	X_14155398_SNP [dm3] X_14261365_SNP [dm6]	C	T	4.077e^-4	0.945	START_GAINED CG1461 UTR_5_PRIME CG1461
2R	3238036	2R_3238036_SNP [dm3] 2R_7350531_SNP [dm6]	G	T	4.078e^-4	0.945	INTRON Dscam1	TF binding site mE1_TFBS_inv
2R	16579319	2R_16579319_SNP [dm3] 2R_20691814_SNP [dm6]	C	T	4.086e^-4	0.945	UPSTREAM CR44659 INTERGENIC
3L	17695073	3L_17695073_SNP [dm3] 3L_17701973_SNP [dm6]	G	T	4.095e^-4	0.945	INTRON Ccn
2R	15556045	2R_15556045_SNP [dm3] 2R_19668540_SNP [dm6]	A	T	4.102e^-4	0.945	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	22076954	X_22076954_SNP [dm3] X_22675118_SNP [dm6]	C	A	4.103e^-4	0.945	INTRON CR44997
2R	8876181	2R_8876181_SNP [dm3] 2R_12988676_SNP [dm6]	T	C	4.104e^-4	0.945	INTERGENIC
2L	6972780	2L_6972780_SNP [dm3] 2L_6972780_SNP [dm6]	T	C	4.107e^-4	0.945	DOWNSTREAM uif EXON CR43142
3R	26643613	3R_26643613_SNP [dm3] 3R_30817891_SNP [dm6]	G	C	4.119e^-4	0.945	SYNONYMOUS_CODING cindr UTR_5_PRIME cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17653159	3L_17653159_SNP [dm3] 3L_17660059_SNP [dm6]	C	G	4.121e^-4	0.945	UTR_3_PRIME Crtc
X	20893183	X_20893183_SNP [dm3] X_21022156_SNP [dm6]	G	T	4.124e^-4	0.945	INTERGENIC
2L	7010936	2L_7010936_SNP [dm3] 2L_7010936_SNP [dm6]	T	C	4.126e^-4	0.945	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11698270	3L_11698270_SNP [dm3] 3L_11705170_SNP [dm6]	A	C	4.137e^-4	0.945	INTRON CG11658
2L	2163913	2L_2163913_SNP [dm3] 2L_2163913_SNP [dm6]	G	C	4.144e^-4	0.945	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7409989	2R_7409989_SNP [dm3] 2R_11522484_SNP [dm6]	C	A	4.145e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12105589	2R_12105589_SNP [dm3] 2R_16218084_SNP [dm6]	T	C	4.145e^-4	0.945	INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	14940951	3L_14940951_SNP [dm3] 3L_14947851_SNP [dm6]	T	C	4.157e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	26014969	3R_26014969_SNP [dm3] 3R_30189247_SNP [dm6]	A	T	4.172e^-4	0.945	INTRON CG9747
2L	9317870	2L_9317870_SNP [dm3] 2L_9317870_SNP [dm6]	A	C	4.176e^-4	0.945	INTERGENIC
3R	4621627	3R_4621627_SNP [dm3] 3R_8795905_SNP [dm6]	C	T	4.178e^-4	0.945	SYNONYMOUS_CODING Ir85a INTRON Pif1A & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6716855	X_6716855_SNP [dm3] X_6822822_SNP [dm6]	C	G	4.181e^-4	0.945	UTR_3_PRIME CG4542 UPSTREAM Atx-1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8375336	X_8375336_SNP [dm3] X_8481303_SNP [dm6]	A	T	4.196e^-4	0.945	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	16385606	3R_16385606_SNP [dm3] 3R_20559884_SNP [dm6]	T	G	4.202e^-4	0.945	UPSTREAM CG5191 DOWNSTREAM CG5180 INTRON CG15922	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7375425	2R_7375425_SNP [dm3] 2R_11487920_SNP [dm6]	G	T	4.205e^-4	0.945	INTRON inv
3L	13372806	3L_13372806_SNP [dm3] 3L_13379706_SNP [dm6]	A	C	4.209e^-4	0.945	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	12940092	X_12940092_SNP [dm3] X_13046059_SNP [dm6]	T	G	4.211e^-4	0.945	INTRON rad
2L	4292056	2L_4292056_SNP [dm3] 2L_4292056_SNP [dm6]	A	G	4.212e^-4	0.945	INTRON tutl
2R	10794243	2R_10794243_SNP [dm3] 2R_14906738_SNP [dm6]	A	G	4.225e^-4	0.945	UPSTREAM CG10249 INTRON CG10249
3L	6073059	3L_6073059_SNP [dm3] 3L_6079959_SNP [dm6]	A	C	4.233e^-4	0.945	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8414135	X_8414135_SNP [dm3] X_8520102_SNP [dm6]	G	C	4.235e^-4	0.945	INTRON Nrg
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	4.242e^-4	0.945	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	4.256e^-4	0.945	INTERGENIC
2R	16450315	2R_16450315_SNP [dm3] 2R_20562810_SNP [dm6]	A	T	4.264e^-4	0.945	UPSTREAM Mgat1 DOWNSTREAM qsm & 1 other INTRON CG43308	TF binding site BDTNP1_TFBS_dl
2L	6055306	2L_6055306_SNP [dm3] 2L_6055306_SNP [dm6]	G	T	4.267e^-4	0.945	INTRON CG13995	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9199189	3L_9199189_SNP [dm3] 3L_9206089_SNP [dm6]	A	T	4.269e^-4	0.945	INTRON Slc45-1
2L	4238225	2L_4238225_SNP [dm3] 2L_4238225_SNP [dm6]	C	T	4.274e^-4	0.945	INTERGENIC
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	4.276e^-4	0.945	INTERGENIC
X	16775760	X_16775760_SNP [dm3] X_16881727_SNP [dm6]	A	C	4.287e^-4	0.945	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo
2R	17266675	2R_17266675_SNP [dm3] 2R_21379170_SNP [dm6]	T	A	4.312e^-4	0.945	START_GAINED cv-2 UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17266688	2R_17266688_SNP [dm3] 2R_21379183_SNP [dm6]	T	A	4.312e^-4	0.945	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17266711	2R_17266711_SNP [dm3] 2R_21379206_SNP [dm6]	A	C	4.312e^-4	0.945	UTR_5_PRIME cv-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12607407	2R_12607407_SNP [dm3] 2R_16719902_SNP [dm6]	C	T	4.314e^-4	0.945	INTRON CG30463
2L	5913141	2L_5913141_SNP [dm3] 2L_5913141_SNP [dm6]	C	T	4.315e^-4	0.945	SYNONYMOUS_CODING bchs
3R	1379128	3R_1379128_SNP [dm3] 3R_5553406_SNP [dm6]	C	T	4.317e^-4	0.945	SYNONYMOUS_CODING Pcmt
2R	6535925	2R_6535925_SNP [dm3] 2R_10648420_SNP [dm6]	G	T	4.322e^-4	0.945	NON_SYNONYMOUS_CODING Elp2 SPLICE_SITE_REGION Elp2 UPSTREAM CG12934
2R	12398317	2R_12398317_SNP [dm3] 2R_16510812_SNP [dm6]	A	G	4.335e^-4	0.945	INTRON Sema-2a
2R	16041945	2R_16041945_SNP [dm3] 2R_20154440_SNP [dm6]	C	G	4.338e^-4	0.945	INTERGENIC
2R	11981573	2R_11981573_SNP [dm3] 2R_16094068_SNP [dm6]	A	C	4.338e^-4	0.945	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7126244	2R_7126244_SNP [dm3] 2R_11238739_SNP [dm6]	C	T	4.344e^-4	0.945	SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
2L	1212161	2L_1212161_SNP [dm3] 2L_1212161_SNP [dm6]	A	T	4.345e^-4	0.945	INTERGENIC
2L	12170118	2L_12170118_SNP [dm3] 2L_12170118_SNP [dm6]	A	G	4.352e^-4	0.945	UTR_3_PRIME CG31760 UPSTREAM CG17217
3R	19399978	3R_19399978_SNP [dm3] 3R_23574256_SNP [dm6]	G	T	4.356e^-4	0.945	INTRON beat-IV	TF binding site mE1_TFBS_chinmo
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	4.383e^-4	0.945	NON_SYNONYMOUS_CODING CG32984
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	4.384e^-4	0.945	INTRON CG32365
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	4.387e^-4	0.945	INTRON CG34362
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	4.394e^-4	0.945	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19017886	3L_19017886_SNP [dm3] 3L_19024786_SNP [dm6]	T	G	4.396e^-4	0.945	INTRON nkd
X	16721471	X_16721471_SNP [dm3] X_16827438_SNP [dm6]	A	T	4.400e^-4	0.945	SYNONYMOUS_CODING CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	4.413e^-4	0.945	INTERGENIC
2L	15430333	2L_15430333_INS [dm3] 2L_15430333_INS [dm6]	G	GCTG	4.442e^-4	0.945	INTERGENIC
X	17488728	X_17488728_SNP [dm3] X_17594695_SNP [dm6]	T	C	4.443e^-4	0.945	INTRON CG12991
2L	6780327	2L_6780327_SNP [dm3] 2L_6780327_SNP [dm6]	C	T	4.446e^-4	0.945	INTRON nrv1
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	4.459e^-4	0.945	INTRON CG5758
2R	14704160	2R_14704160_SNP [dm3] 2R_18816655_SNP [dm6]	C	T	4.461e^-4	0.945	UPSTREAM CG15096 INTERGENIC
3R	19178688	3R_19178688_SNP [dm3] 3R_23352966_SNP [dm6]	A	G	4.462e^-4	0.945	SYNONYMOUS_CODING DNApol-epsilon	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24275909	3R_24275909_SNP [dm3] 3R_28450187_SNP [dm6]	G	A	4.463e^-4	0.945	INTRON beat-VI
2L	15373318	2L_15373318_SNP [dm3] 2L_15373318_SNP [dm6]	C	T	4.470e^-4	0.945	INTERGENIC
3L	13951120	3L_13951120_SNP [dm3] 3L_13958020_SNP [dm6]	G	T	4.471e^-4	0.945	INTRON CG32137	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	19650139	3R_19650139_SNP [dm3] 3R_23824417_SNP [dm6]	T	C	4.473e^-4	0.945	DOWNSTREAM CR43285 INTRON CG34355
2L	712527	2L_712527_SNP [dm3] 2L_712527_SNP [dm6]	G	C	4.485e^-4	0.945	INTRON ds & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18540101	2R_18540101_SNP [dm3] 2R_22652596_SNP [dm6]	A	T	4.489e^-4	0.945	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3R	16383883	3R_16383883_SNP [dm3] 3R_20558161_SNP [dm6]	G	A	4.492e^-4	0.945	UPSTREAM CG5180 & 1 other INTRON CG5180	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_cad
2L	4078683	2L_4078683_SNP [dm3] 2L_4078683_SNP [dm6]	A	T	4.499e^-4	0.945	INTRON ed
3L	7721525	3L_7721525_SNP [dm3] 3L_7728425_SNP [dm6]	G	T	4.508e^-4	0.945	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3R	25504313	3R_25504313_SNP [dm3] 3R_29678591_SNP [dm6]	G	T	4.514e^-4	0.945	SYNONYMOUS_CODING Cap-D2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9573196	2R_9573196_SNP [dm3] 2R_13685691_SNP [dm6]	A	G	4.529e^-4	0.945	INTRON fas
2L	11037968	2L_11037968_SNP [dm3] 2L_11037968_SNP [dm6]	G	A	4.532e^-4	0.945	INTRON Samuel	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	18329522	X_18329522_SNP [dm3] X_18435489_SNP [dm6]	A	G	4.537e^-4	0.945	DOWNSTREAM CG32548 INTERGENIC
2R	11603812	2R_11603812_SNP [dm3] 2R_15716307_SNP [dm6]	T	C	4.543e^-4	0.945	INTERGENIC
2L	8708377	2L_8708377_SNP [dm3] 2L_8708377_SNP [dm6]	G	A	4.544e^-4	0.945	DOWNSTREAM CG9314 INTRON Hnf4
2L	7426865	2L_7426865_SNP [dm3] 2L_7426865_SNP [dm6]	A	G	4.546e^-4	0.945	UPSTREAM CG5261 DOWNSTREAM mir-275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	24264948	3R_24264948_SNP [dm3] 3R_28439226_SNP [dm6]	C	A	4.550e^-4	0.945	INTRON beat-VI
2R	6468279	2R_6468279_SNP [dm3] 2R_10580774_SNP [dm6]	A	T	4.553e^-4	0.945	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4491420	X_4491420_SNP [dm3] X_4597387_SNP [dm6]	A	G	4.554e^-4	0.945	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
4	469871	4_469871_SNP [dm3] 4_449245_SNP [dm6]	C	T	4.555e^-4	0.945	INTRON CaMKI	transposable element FlyBase
2R	5933544	2R_5933544_SNP [dm3] 2R_10046039_SNP [dm6]	T	C	4.558e^-4	0.945	DOWNSTREAM CR44295 INTRON oys
2L	10461467	2L_10461467_SNP [dm3] 2L_10461467_SNP [dm6]	C	T	4.568e^-4	0.945	SYNONYMOUS_CODING LM408	TF binding site mE1_TFBS_cad
3R	26713118	3R_26713118_SNP [dm3] 3R_30887396_SNP [dm6]	C	T	4.568e^-4	0.945	INTRON Sap-r
3L	10699798	3L_10699798_SNP [dm3] 3L_10706698_SNP [dm6]	A	T	4.577e^-4	0.945	INTERGENIC
2R	13535330	2R_13535330_SNP [dm3] 2R_17647825_SNP [dm6]	G	A	4.580e^-4	0.945	SYNONYMOUS_CODING CCHa1-R
2L	6854019	2L_6854019_SNP [dm3] 2L_6854019_SNP [dm6]	G	T	4.580e^-4	0.945	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	23828744	3R_23828744_SNP [dm3] 3R_28003022_SNP [dm6]	A	T	4.585e^-4	0.945	INTERGENIC
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	4.588e^-4	0.945	UTR_3_PRIME CG42741 INTRON twi
3R	16041784	3R_16041784_SNP [dm3] 3R_20216062_SNP [dm6]	G	C	4.589e^-4	0.945	INTRON Nlg4	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
X	15178810	X_15178810_SNP [dm3] X_15284777_SNP [dm6]	G	T	4.591e^-4	0.945	INTERGENIC
X	21912767	X_21912767_SNP [dm3] X_22510931_SNP [dm6]	C	G	4.593e^-4	0.945	INTERGENIC	transposable element FlyBase
3R	14080866	3R_14080866_SNP [dm3] 3R_18255144_SNP [dm6]	T	C	4.593e^-4	0.945	NON_SYNONYMOUS_CODING Ada2a UPSTREAM moi & 1 other INTRON Rpb4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5291423	3R_5291423_SNP [dm3] 3R_9465701_SNP [dm6]	C	T	4.595e^-4	0.945	UTR_3_PRIME CG16779
3L	16569904	3L_16569904_SNP [dm3] 3L_16576804_SNP [dm6]	C	A	4.599e^-4	0.945	UTR_3_PRIME mbf1 DOWNSTREAM nxf2 & 1 other
2R	1743648	2R_1743648_SNP [dm3] 2R_5856143_SNP [dm6]	G	A	4.600e^-4	0.945	INTRON dpr12	TF binding site mE1_TFBS_chinmo
2L	14857029	2L_14857029_SNP [dm3] 2L_14857029_SNP [dm6]	T	C	4.601e^-4	0.945	INTERGENIC
X	4277398	X_4277398_SNP [dm3] X_4383365_SNP [dm6]	A	C	4.601e^-4	0.945	DOWNSTREAM CG12688 INTERGENIC
3R	14229618	3R_14229618_SNP [dm3] 3R_18403896_SNP [dm6]	C	T	4.603e^-4	0.945	SPLICE_SITE_REGION koko SYNONYMOUS_CODING koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	4.606e^-4	0.945	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9115336	X_9115336_SNP [dm3] X_9221303_SNP [dm6]	G	A	4.618e^-4	0.945	SYNONYMOUS_CODING t
2R	10897814	2R_10897814_SNP [dm3] 2R_15010309_SNP [dm6]	A	G	4.619e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_kn mE1_TFBS_Trl
3R	6874535	3R_6874535_SNP [dm3] 3R_11048813_SNP [dm6]	T	G	4.621e^-4	0.945	UTR_3_PRIME CG34114
3R	15083796	3R_15083796_SNP [dm3] 3R_19258074_SNP [dm6]	C	A	4.624e^-4	0.945	SYNONYMOUS_CODING CG14280	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17442555	2R_17442555_SNP [dm3] 2R_21555050_SNP [dm6]	C	A	4.628e^-4	0.945	SPLICE_SITE_REGION Egfr SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_HSA
2L	1945801	2L_1945801_DEL [dm3] 2L_1945801_DEL [dm6]	AT	A	4.636e^-4	0.945	UPSTREAM CG15357 DOWNSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs
3R	20299426	3R_20299426_SNP [dm3] 3R_24473704_SNP [dm6]	A	G	4.638e^-4	0.945	INTERGENIC
3R	27118394	3R_27118394_SNP [dm3] 3R_31292672_SNP [dm6]	G	C	4.643e^-4	0.945	INTERGENIC
2L	14847815	2L_14847815_SNP [dm3] 2L_14847815_SNP [dm6]	G	A	4.650e^-4	0.945	INTRON CG15279
3R	24752213	3R_24752213_SNP [dm3] 3R_28926491_SNP [dm6]	G	T	4.651e^-4	0.945	INTRON CG14521
3R	24752216	3R_24752216_SNP [dm3] 3R_28926494_SNP [dm6]	T	C	4.651e^-4	0.945	INTRON CG14521
3R	24752226	3R_24752226_SNP [dm3] 3R_28926504_SNP [dm6]	G	A	4.651e^-4	0.945	INTRON CG14521
3R	22410810	3R_22410810_SNP [dm3] 3R_26585088_SNP [dm6]	C	G	4.652e^-4	0.945	SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11522641	2R_11522641_SNP [dm3] 2R_15635136_SNP [dm6]	C	A	4.657e^-4	0.945	INTRON CG42524
2L	5517653	2L_5517653_SNP [dm3] 2L_5517653_SNP [dm6]	C	T	4.664e^-4	0.945	UPSTREAM CG14020 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	26928757	3R_26928757_SNP [dm3] 3R_31103035_SNP [dm6]	T	C	4.665e^-4	0.945	INTERGENIC
2R	12398479	2R_12398479_SNP [dm3] 2R_16510974_SNP [dm6]	C	T	4.672e^-4	0.945	INTRON Sema-2a
3R	22402628	3R_22402628_SNP [dm3] 3R_26576906_SNP [dm6]	C	T	4.676e^-4	0.945	UTR_3_PRIME scrib INTRON scrib
3L	14635153	3L_14635153_SNP [dm3] 3L_14642053_SNP [dm6]	C	T	4.682e^-4	0.945	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7361418	2R_7361418_SNP [dm3] 2R_11473913_SNP [dm6]	A	C	4.683e^-4	0.945	UPSTREAM inv INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6907442	2L_6907442_SNP [dm3] 2L_6907442_SNP [dm6]	G	A	4.686e^-4	0.945	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18063190	3R_18063190_SNP [dm3] 3R_22237468_SNP [dm6]	C	T	4.698e^-4	0.945	INTRON SKIP
4	404293	4_404293_SNP [dm3] 4_383667_SNP [dm6]	G	A	4.712e^-4	0.945	INTRON Lin29	TF binding site BDTNP1_TFBS_dl
3R	1363842	3R_1363842_SNP [dm3] 3R_5538120_SNP [dm6]	G	T	4.715e^-4	0.945	SYNONYMOUS_CODING Itp-r83A
2R	11392356	2R_11392356_SNP [dm3] 2R_15504851_SNP [dm6]	A	G	4.721e^-4	0.945	SYNONYMOUS_CODING Ir52c
2R	9198667	2R_9198667_SNP [dm3] 2R_13311162_SNP [dm6]	A	G	4.721e^-4	0.945	INTERGENIC
3R	22806269	3R_22806269_SNP [dm3] 3R_26980547_SNP [dm6]	A	G	4.738e^-4	0.945	UTR_5_PRIME CG14253 INTRON CG14253	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12175989	2R_12175989_SNP [dm3] 2R_16288484_SNP [dm6]	C	G	4.741e^-4	0.945	SYNONYMOUS_CODING CG30099 UPSTREAM CG30324 & 1 other DOWNSTREAM CR43730	TF binding site mE1_TFBS_cad
2R	15556101	2R_15556101_SNP [dm3] 2R_19668596_SNP [dm6]	G	C	4.741e^-4	0.945	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	14201253	3L_14201253_SNP [dm3] 3L_14208153_SNP [dm6]	A	T	4.741e^-4	0.945	INTRON nuf
2R	15773845	2R_15773845_SNP [dm3] 2R_19886340_SNP [dm6]	T	G	4.743e^-4	0.945	INTERGENIC
3L	16112935	3L_16112935_SNP [dm3] 3L_16119835_SNP [dm6]	A	G	4.750e^-4	0.945	INTRON Taf4	TF binding site mE1_TFBS_cad
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	4.752e^-4	0.945	UPSTREAM para INTERGENIC
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	4.753e^-4	0.945	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
2R	11409467	2R_11409467_SNP [dm3] 2R_15521962_SNP [dm6]	A	C	4.756e^-4	0.945	INTRON Khc-73
2L	9943545	2L_9943545_SNP [dm3] 2L_9943545_SNP [dm6]	C	T	4.759e^-4	0.945	DOWNSTREAM CG4619 INTRON CG5853
2R	13505970	2R_13505970_SNP [dm3] 2R_17618465_SNP [dm6]	C	A	4.771e^-4	0.945	UPSTREAM CG44403 INTRON CG10936
2R	7411648	2R_7411648_SNP [dm3] 2R_11524143_SNP [dm6]	G	A	4.780e^-4	0.945	UTR_3_PRIME en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	4.782e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18139105	2L_18139105_SNP [dm3] 2L_18139105_SNP [dm6]	C	T	4.785e^-4	0.945	UTR_3_PRIME Socs36E
X	4277407	X_4277407_SNP [dm3] X_4383374_SNP [dm6]	A	T	4.788e^-4	0.945	DOWNSTREAM CG12688 INTERGENIC
3L	7734162	3L_7734162_SNP [dm3] 3L_7741062_SNP [dm6]	C	T	4.793e^-4	0.945	INTRON CG32373 & 1 other
2R	7200898	2R_7200898_SNP [dm3] 2R_11313393_SNP [dm6]	C	T	4.802e^-4	0.945	INTRON nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16310448	3L_16310448_SNP [dm3] 3L_16317348_SNP [dm6]	C	A	4.805e^-4	0.945	UPSTREAM Nplp3 INTERGENIC
2R	16857925	2R_16857925_SNP [dm3] 2R_20970420_SNP [dm6]	A	G	4.810e^-4	0.945	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19633165	3L_19633165_SNP [dm3] 3L_19640065_SNP [dm6]	T	G	4.817e^-4	0.945	SYNONYMOUS_CODING CG8786 DOWNSTREAM CG8786
3L	8046505	3L_8046505_SNP [dm3] 3L_8053405_SNP [dm6]	T	C	4.817e^-4	0.945	UTR_3_PRIME nmo DOWNSTREAM nmo & 1 other
2L	7012001	2L_7012001_SNP [dm3] 2L_7012001_SNP [dm6]	T	A	4.819e^-4	0.945	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11779661	2R_11779661_SNP [dm3] 2R_15892156_SNP [dm6]	A	G	4.827e^-4	0.945	INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6459600	2L_6459600_SNP [dm3] 2L_6459600_SNP [dm6]	G	A	4.828e^-4	0.945	SYNONYMOUS_CODING CG16947 DOWNSTREAM frj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	17584374	3L_17584374_SNP [dm3] 3L_17591274_SNP [dm6]	T	G	4.829e^-4	0.945	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
3L	12598163	3L_12598163_SNP [dm3] 3L_12605063_SNP [dm6]	A	G	4.831e^-4	0.945	INTERGENIC
3R	19231933	3R_19231933_SNP [dm3] 3R_23406211_SNP [dm6]	T	C	4.833e^-4	0.945	SYNONYMOUS_CODING Ir94e
2R	18540103	2R_18540103_SNP [dm3] 2R_22652598_SNP [dm6]	A	T	4.833e^-4	0.945	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	5340732	2R_5340732_SNP [dm3] 2R_9453227_SNP [dm6]	A	T	4.850e^-4	0.946	DOWNSTREAM CG33758 INTRON Camta
X	12906573	X_12906573_SNP [dm3] X_13012540_SNP [dm6]	T	A	4.851e^-4	0.946	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	4.868e^-4	0.946	INTERGENIC
X	6790498	X_6790498_SNP [dm3] X_6896465_SNP [dm6]	C	T	4.868e^-4	0.946	INTERGENIC
3R	20844128	3R_20844128_SNP [dm3] 3R_25018406_SNP [dm6]	A	G	4.871e^-4	0.946	SYNONYMOUS_CODING tnc
3L	9332208	3L_9332208_SNP [dm3] 3L_9339108_SNP [dm6]	A	G	4.887e^-4	0.946	DOWNSTREAM PGRP-LA INTRON PGRP-LC
4	495786	4_495786_INS [dm3] 4_475160_INS [dm6]	T	TT	4.893e^-4	0.946	INTRON Asator
3R	14903097	3R_14903097_SNP [dm3] 3R_19077375_SNP [dm6]	C	A	4.901e^-4	0.946	INTRON cdi
X	16082836	X_16082836_SNP [dm3] X_16188803_SNP [dm6]	T	C	4.910e^-4	0.946	INTERGENIC
3R	12993250	3R_12993250_SNP [dm3] 3R_17167528_SNP [dm6]	A	G	4.911e^-4	0.946	INTRON Mur89F
3R	26026168	3R_26026168_SNP [dm3] 3R_30200446_SNP [dm6]	C	A	4.915e^-4	0.946	INTRON CG9743	TF binding site mE1_TFBS_chinmo
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	4.919e^-4	0.946	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8062919	3L_8062919_SNP [dm3] 3L_8069819_SNP [dm6]	T	C	4.920e^-4	0.946	SYNONYMOUS_CODING CG42591 UPSTREAM CG42590 INTRON Ect4	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	19372708	2L_19372708_SNP [dm3] 2L_19372708_SNP [dm6]	C	A	4.932e^-4	0.946	UTR_3_PRIME CG17349
2R	17043683	2R_17043683_SNP [dm3] 2R_21156178_SNP [dm6]	A	T	4.938e^-4	0.946	INTRON CG30389
2L	12475436	2L_12475436_SNP [dm3] 2L_12475436_SNP [dm6]	C	T	4.940e^-4	0.946	INTRON bun
2L	3470929	2L_3470929_SNP [dm3] 2L_3470929_SNP [dm6]	T	C	4.950e^-4	0.946	SYNONYMOUS_CODING CG31776 UPSTREAM CG3238
2L	19377878	2L_19377878_SNP [dm3] 2L_19377878_SNP [dm6]	G	A	4.955e^-4	0.946	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	9183181	2R_9183181_SNP [dm3] 2R_13295676_SNP [dm6]	C	T	4.956e^-4	0.946	START_GAINED Dh31-R UTR_5_PRIME Dh31-R
3R	23877918	3R_23877918_SNP [dm3] 3R_28052196_SNP [dm6]	A	C	4.964e^-4	0.946	INTRON CG34362
3R	14971862	3R_14971862_SNP [dm3] 3R_19146140_SNP [dm6]	G	A	4.966e^-4	0.946	INTRON Ppcs
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	4.966e^-4	0.946	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
2R	12940966	2R_12940966_SNP [dm3] 2R_17053461_SNP [dm6]	G	T	4.969e^-4	0.946	UPSTREAM fat-spondin INTRON CG9646
3R	1400086	3R_1400086_DEL [dm3] 3R_5574364_DEL [dm6]	GGG	G	4.975e^-4	0.946	INTRON CRMP	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	16753169	X_16753169_SNP [dm3] X_16859136_SNP [dm6]	G	C	4.995e^-4	0.946	INTRON CG13003
2L	5911226	2L_5911226_SNP [dm3] 2L_5911226_SNP [dm6]	C	G	5.001e^-4	0.946	SYNONYMOUS_CODING bchs UPSTREAM CG14000
3R	10982030	3R_10982030_SNP [dm3] 3R_15156308_SNP [dm6]	A	C	5.002e^-4	0.946	INTRON Gyc88E
3L	7580515	3L_7580515_SNP [dm3] 3L_7587415_SNP [dm6]	G	A	5.010e^-4	0.946	DOWNSTREAM CG14838 INTERGENIC
3L	3799403	3L_3799403_SNP [dm3] 3L_3799403_SNP [dm6]	A	G	5.018e^-4	0.946	INTRON CG32264
X	21879809	X_21879809_SNP [dm3] X_22477973_SNP [dm6]	A	T	5.021e^-4	0.946	UPSTREAM CG12576 INTRON CG12576
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	5.022e^-4	0.946	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	5.025e^-4	0.946	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16785887	2R_16785887_SNP [dm3] 2R_20898382_SNP [dm6]	T	C	5.030e^-4	0.946	UPSTREAM otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1420684	3L_1420684_SNP [dm3] 3L_1420684_SNP [dm6]	G	A	5.036e^-4	0.946	DOWNSTREAM CG9173 INTRON Ptp61F
X	7941708	X_7941708_SNP [dm3] X_8047675_SNP [dm6]	T	G	5.042e^-4	0.946	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11496739	2L_11496739_SNP [dm3] 2L_11496739_SNP [dm6]	C	A	5.052e^-4	0.946	DOWNSTREAM CG6488 INTERGENIC
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	5.057e^-4	0.946	INTRON twin
2R	17338366	2R_17338366_SNP [dm3] 2R_21450861_SNP [dm6]	C	G	5.058e^-4	0.946	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17338379	2R_17338379_SNP [dm3] 2R_21450874_SNP [dm6]	G	T	5.058e^-4	0.946	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10182815	3L_10182815_SNP [dm3] 3L_10189715_SNP [dm6]	C	A	5.061e^-4	0.946	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	11594100	2R_11594100_SNP [dm3] 2R_15706595_SNP [dm6]	G	A	5.070e^-4	0.946	INTERGENIC
2R	12419989	2R_12419989_SNP [dm3] 2R_16532484_SNP [dm6]	C	G	5.073e^-4	0.946	UTR_3_PRIME Sema-2a

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.585e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.004521

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	12.7328	0.0017

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1885 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	2.554e^-7	0.479	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	1.534e^-6	0.968	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	2.282e^-6	0.968	INTRON fas
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	6.543e^-6	0.968	INTRON kibra
2R	9774945	2R_9774945_SNP [dm3] 2R_13887440_SNP [dm6]	G	T	8.140e^-6	0.968	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
3L	11854273	3L_11854273_SNP [dm3] 3L_11861173_SNP [dm6]	C	T	9.687e^-6	0.968	INTRON CG44837
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	1.106e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.129e^-5	0.968	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
2L	4864962	2L_4864962_SNP [dm3] 2L_4864962_SNP [dm6]	A	T	1.159e^-5	0.968	INTRON pog
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	1.213e^-5	0.968	INTRON Ten-a
2R	9774963	2R_9774963_SNP [dm3] 2R_13887458_SNP [dm6]	A	G	1.242e^-5	0.968	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	9561278	2L_9561278_SNP [dm3] 2L_9561278_SNP [dm6]	C	T	1.292e^-5	0.968	UPSTREAM jp INTRON jp
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	1.323e^-5	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	1.449e^-5	0.968	INTERGENIC
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	1.538e^-5	0.968	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	1.575e^-5	0.968	INTERGENIC
2R	9502337	2R_9502337_SNP [dm3] 2R_13614832_SNP [dm6]	T	C	1.604e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	1.649e^-5	0.968	UPSTREAM jp INTRON jp
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	1.682e^-5	0.968	INTRON lilli
2L	8246765	2L_8246765_SNP [dm3] 2L_8246765_SNP [dm6]	G	A	1.734e^-5	0.968	SPLICE_SITE_REGION CG8086 SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	1.803e^-5	0.968	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	1.876e^-5	0.968	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18363771	X_18363771_SNP [dm3] X_18469738_SNP [dm6]	C	T	1.922e^-5	0.968	INTRON CG32547
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	2.074e^-5	0.968	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
2R	18887422	2R_18887422_SNP [dm3] 2R_22999899_SNP [dm6]	G	C	2.077e^-5	0.968	INTRON twi
2L	4624624	2L_4624624_SNP [dm3] 2L_4624624_SNP [dm6]	G	A	2.145e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.153e^-5	0.968	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	26755944	3R_26755944_SNP [dm3] 3R_30930222_SNP [dm6]	G	T	2.228e^-5	0.968	UTR_3_PRIME Ptx1 DOWNSTREAM Ptx1
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	2.452e^-5	0.968	INTRON CG13579
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	2.553e^-5	0.968	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	19009769	3L_19009769_SNP [dm3] 3L_19016669_SNP [dm6]	C	T	2.585e^-5	0.968	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	2.613e^-5	0.968	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	2.777e^-5	0.968	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	2.779e^-5	0.968	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	2.789e^-5	0.968	UPSTREAM CG15865 INTRON r
3R	12993292	3R_12993292_SNP [dm3] 3R_17167570_SNP [dm6]	T	A	2.790e^-5	0.968	INTRON Mur89F
3L	3525107	3L_3525107_SNP [dm3] 3L_3525107_SNP [dm6]	G	A	2.883e^-5	0.968	INTRON Eip63E
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	2.894e^-5	0.968	UPSTREAM CG33225 INTERGENIC
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	3.119e^-5	0.968	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	3.148e^-5	0.968	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	3.204e^-5	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	3.296e^-5	0.968	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	3.390e^-5	0.968	DOWNSTREAM CR44026 INTRON baz
2L	9570077	2L_9570077_DEL [dm3] 2L_9570077_DEL [dm6]	ATTAATAGTTGA...	A	3.445e^-5	0.968	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	3.519e^-5	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	5993439	2L_5993439_SNP [dm3] 2L_5993439_SNP [dm6]	C	A	3.585e^-5	0.968	INTRON lid	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16710183	X_16710183_SNP [dm3] X_16816150_SNP [dm6]	C	A	3.633e^-5	0.968	UPSTREAM CG4829 & 1 other INTRON CG4829
2R	11333214	2R_11333214_SNP [dm3] 2R_15445709_SNP [dm6]	G	A	3.643e^-5	0.968	INTRON CG43729
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	3.775e^-5	0.968	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	3.804e^-5	0.968	NON_SYNONYMOUS_CODING mbc
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	3.810e^-5	0.968	INTRON lilli	TF binding site mE1_TFBS_Trl
2R	8275209	2R_8275209_SNP [dm3] 2R_12387704_SNP [dm6]	C	T	3.901e^-5	0.968	INTRON Cpr49Ac
2R	1504828	2R_1504828_SNP [dm3] 2R_5617323_SNP [dm6]	C	G	4.326e^-5	0.968	INTERGENIC
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	4.336e^-5	0.968	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9222879	X_9222879_SNP [dm3] X_9328846_SNP [dm6]	G	A	4.339e^-5	0.968	DOWNSTREAM CG34450 INTRON CG34449
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	4.431e^-5	0.968	INTRON Sh
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	4.468e^-5	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	4.483e^-5	0.968	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	4.518e^-5	0.968	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	9561128	2L_9561128_SNP [dm3] 2L_9561128_SNP [dm6]	T	C	4.518e^-5	0.968	UPSTREAM jp INTRON jp
2L	9563147	2L_9563147_SNP [dm3] 2L_9563147_SNP [dm6]	C	G	4.565e^-5	0.968	INTRON jp
2R	7398017	2R_7398017_SNP [dm3] 2R_11510512_SNP [dm6]	G	T	4.669e^-5	0.968	DOWNSTREAM inv INTERGENIC
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	4.681e^-5	0.968	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
2L	9561194	2L_9561194_DEL [dm3] 2L_9561194_DEL [dm6]	TCGCAAAGT	T	4.767e^-5	0.968	UPSTREAM jp INTRON jp
2L	9561223	2L_9561223_SNP [dm3] 2L_9561223_SNP [dm6]	C	A	4.767e^-5	0.968	UPSTREAM jp INTRON jp
3L	1897452	3L_1897452_SNP [dm3] 3L_1897452_SNP [dm6]	T	C	4.773e^-5	0.968	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
2L	9561442	2L_9561442_SNP [dm3] 2L_9561442_SNP [dm6]	C	A	4.829e^-5	0.968	INTRON jp
3L	5752965	3L_5752965_SNP [dm3] 3L_5759865_SNP [dm6]	C	T	4.889e^-5	0.968	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6790363	X_6790363_SNP [dm3] X_6896330_SNP [dm6]	C	T	4.970e^-5	0.968	INTERGENIC
2R	10301914	2R_10301914_SNP [dm3] 2R_14414409_SNP [dm6]	A	G	5.028e^-5	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	5.083e^-5	0.968	INTRON CG34362
X	16559445	X_16559445_SNP [dm3] X_16665412_SNP [dm6]	A	T	5.281e^-5	0.968	UPSTREAM CG15865 INTRON r
X	2326589	X_2326589_SNP [dm3] X_2432556_SNP [dm6]	G	C	5.281e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	5.305e^-5	0.968	DOWNSTREAM CG8086 & 1 other INTRON CG43057
X	12146582	X_12146582_SNP [dm3] X_12252549_SNP [dm6]	G	A	5.329e^-5	0.968	INTRON Ten-a
X	2326700	X_2326700_SNP [dm3] X_2432667_SNP [dm6]	T	C	5.330e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	16178110	X_16178110_SNP [dm3] X_16284077_SNP [dm6]	A	G	5.378e^-5	0.968	SYNONYMOUS_CODING eas UTR_3_PRIME eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	14976110	3R_14976110_SNP [dm3] 3R_19150388_SNP [dm6]	G	A	5.387e^-5	0.968	DOWNSTREAM CR44107 INTRON CG5835
2R	9204972	2R_9204972_SNP [dm3] 2R_13317467_SNP [dm6]	T	G	5.390e^-5	0.968	INTERGENIC
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	5.454e^-5	0.968	UPSTREAM CG11112 INTRON Eaf
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	5.494e^-5	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	5.680e^-5	0.968	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	5.896e^-5	0.968	INTERGENIC
2L	13832476	2L_13832476_SNP [dm3] 2L_13832476_SNP [dm6]	G	A	6.003e^-5	0.968	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	21923107	X_21923107_SNP [dm3] X_22521271_SNP [dm6]	A	C	6.147e^-5	0.968	INTRON CG17600
2R	9204973	2R_9204973_SNP [dm3] 2R_13317468_SNP [dm6]	G	C	6.168e^-5	0.968	INTERGENIC
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	6.221e^-5	0.968	INTRON Ten-a
2L	9706602	2L_9706602_SNP [dm3] 2L_9706602_SNP [dm6]	G	T	6.284e^-5	0.968	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	16559447	X_16559447_SNP [dm3] X_16665414_SNP [dm6]	G	C	6.383e^-5	0.968	UPSTREAM CG15865 INTRON r
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	6.387e^-5	0.968	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	6.461e^-5	0.968	INTRON bbg
X	14156611	X_14156611_SNP [dm3] X_14262578_SNP [dm6]	T	A	6.483e^-5	0.968	INTRON CG1461
X	2088787	X_2088787_SNP [dm3] X_2194754_SNP [dm6]	G	A	6.495e^-5	0.968	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	6.611e^-5	0.968	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3525033	3L_3525033_SNP [dm3] 3L_3525033_SNP [dm6]	G	T	6.627e^-5	0.968	INTRON Eip63E
X	16559459	X_16559459_SNP [dm3] X_16665426_SNP [dm6]	G	A	6.730e^-5	0.968	UPSTREAM CG15865 INTRON r
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	6.737e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	6.741e^-5	0.968	UPSTREAM CG8997 & 1 other INTRON CenG1A
3R	12993250	3R_12993250_SNP [dm3] 3R_17167528_SNP [dm6]	A	G	6.759e^-5	0.968	INTRON Mur89F
X	3862928	X_3862928_SNP [dm3] X_3968895_SNP [dm6]	T	G	6.832e^-5	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	4813097	2L_4813097_SNP [dm3] 2L_4813097_SNP [dm6]	C	T	6.833e^-5	0.968	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9562350	2L_9562350_SNP [dm3] 2L_9562350_SNP [dm6]	G	A	6.878e^-5	0.968	INTRON jp
X	4537361	X_4537361_SNP [dm3] X_4643328_SNP [dm6]	A	T	6.922e^-5	0.968	INTRON CG3081 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	6.932e^-5	0.968	UTR_3_PRIME Sema-2a
2L	5903120	2L_5903120_SNP [dm3] 2L_5903120_SNP [dm6]	C	T	6.992e^-5	0.968	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9564272	2L_9564272_SNP [dm3] 2L_9564272_SNP [dm6]	G	A	7.185e^-5	0.968	INTRON jp
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	7.242e^-5	0.968	INTRON trol
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	7.245e^-5	0.968	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	7410324	2R_7410324_INS [dm3] 2R_11522819_INS [dm6]	T	TAATT	7.334e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	891801	3L_891801_SNP [dm3] 3L_891801_SNP [dm6]	A	T	7.351e^-5	0.968	DOWNSTREAM snoRNA:CG32479-a INTRON CG32479	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14085797	2L_14085797_SNP [dm3] 2L_14085797_SNP [dm6]	A	T	7.409e^-5	0.968	INTRON nAChRalpha5
2R	7410419	2R_7410419_INS [dm3] 2R_11522914_INS [dm6]	T	TGTT	7.411e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	16520481	2L_16520481_SNP [dm3] 2L_16520481_SNP [dm6]	T	C	7.423e^-5	0.968	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	7.435e^-5	0.968	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	7.531e^-5	0.968	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	7.531e^-5	0.968	INTRON mam	TF binding site BDTNP1_TFBS_dl
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	7.764e^-5	0.968	INTRON Sh
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	7.801e^-5	0.968	INTRON CG43729
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	7.812e^-5	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	7.848e^-5	0.968	INTRON bbg
2L	6780327	2L_6780327_SNP [dm3] 2L_6780327_SNP [dm6]	C	T	7.881e^-5	0.968	INTRON nrv1
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	7.882e^-5	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2R	7829730	2R_7829730_SNP [dm3] 2R_11942225_SNP [dm6]	C	T	8.008e^-5	0.968	INTRON CG13188
2R	11298188	2R_11298188_SNP [dm3] 2R_15410683_SNP [dm6]	C	T	8.030e^-5	0.968	INTRON CG43729
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	8.154e^-5	0.968	INTRON CG43729
2L	16569974	2L_16569974_SNP [dm3] 2L_16569974_SNP [dm6]	G	A	8.207e^-5	0.968	INTRON CG42389
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	8.389e^-5	0.968	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	8.457e^-5	0.968	INTRON CG34362
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	8.569e^-5	0.968	INTRON FMRFaR
2R	17403730	2R_17403730_SNP [dm3] 2R_21516225_SNP [dm6]	C	T	8.584e^-5	0.968	SYNONYMOUS_CODING MESK2 DOWNSTREAM CG10494
X	16559458	X_16559458_SNP [dm3] X_16665425_SNP [dm6]	C	A	8.621e^-5	0.968	UPSTREAM CG15865 INTRON r
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	8.660e^-5	0.968	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3525092	3L_3525092_SNP [dm3] 3L_3525092_SNP [dm6]	A	T	8.759e^-5	0.968	INTRON Eip63E
X	16559535	X_16559535_SNP [dm3] X_16665502_SNP [dm6]	A	T	8.925e^-5	0.968	INTRON r
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	8.932e^-5	0.968	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	11333645	2R_11333645_SNP [dm3] 2R_15446140_SNP [dm6]	G	A	9.063e^-5	0.968	INTRON CG43729
2R	7157615	2R_7157615_SNP [dm3] 2R_11270110_SNP [dm6]	C	G	9.146e^-5	0.968	NON_SYNONYMOUS_CODING Cpr47Ef	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	9.192e^-5	0.968	INTRON CG9850
2L	6125762	2L_6125762_SNP [dm3] 2L_6125762_SNP [dm6]	G	A	9.210e^-5	0.968	DOWNSTREAM WDR79 INTRON Arpc4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20827205	3R_20827205_SNP [dm3] 3R_25001483_SNP [dm6]	A	G	9.217e^-5	0.968	SYNONYMOUS_CODING tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	9.236e^-5	0.968	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	9.274e^-5	0.968	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20489173	2R_20489173_SNP [dm3] 2R_24601650_SNP [dm6]	A	T	9.629e^-5	0.968	UTR_3_PRIME CG3548 UPSTREAM CG3565	TF binding site mE1_TFBS_chinmo
3L	891246	3L_891246_SNP [dm3] 3L_891246_SNP [dm6]	A	T	9.828e^-5	0.968	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	9.930e^-5	0.968	INTERGENIC
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	9.943e^-5	0.968	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7722478	3L_7722478_SNP [dm3] 3L_7729378_SNP [dm6]	G	A	9.952e^-5	0.968	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	8153986	2R_8153986_SNP [dm3] 2R_12266481_SNP [dm6]	G	T	9.970e^-5	0.968	INTRON Cam
X	16559450	X_16559450_SNP [dm3] X_16665417_SNP [dm6]	T	C	1.001e^-4	0.968	UPSTREAM CG15865 INTRON r
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	1.012e^-4	0.968	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8743216	3L_8743216_SNP [dm3] 3L_8750116_SNP [dm6]	C	A	1.016e^-4	0.968	UPSTREAM CG13306 INTERGENIC
2R	16547265	2R_16547265_SNP [dm3] 2R_20659760_SNP [dm6]	C	T	1.021e^-4	0.968	INTRON Lrt
3R	14265909	3R_14265909_SNP [dm3] 3R_18440187_SNP [dm6]	C	G	1.033e^-4	0.968	INTRON fru
X	21923143	X_21923143_SNP [dm3] X_22521307_SNP [dm6]	C	T	1.033e^-4	0.968	INTRON CG17600
2L	10071129	2L_10071129_INS [dm3] 2L_10071129_INS [dm6]	T	TTC	1.040e^-4	0.968	INTRON CG44153
2R	7410446	2R_7410446_SNP [dm3] 2R_11522941_SNP [dm6]	T	A	1.045e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	1.048e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13845685	2L_13845685_SNP [dm3] 2L_13845685_SNP [dm6]	T	A	1.049e^-4	0.968	UPSTREAM CG8997 INTRON CenG1A
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	1.057e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	1.057e^-4	0.968	INTERGENIC
2R	17147895	2R_17147895_SNP [dm3] 2R_21260390_SNP [dm6]	C	T	1.077e^-4	0.968	INTRON Rgk3
2R	19629168	2R_19629168_SNP [dm3] 2R_23741645_SNP [dm6]	A	G	1.077e^-4	0.968	INTRON egl
2L	9562873	2L_9562873_SNP [dm3] 2L_9562873_SNP [dm6]	T	A	1.091e^-4	0.968	INTRON jp
2L	6462293	2L_6462293_SNP [dm3] 2L_6462293_SNP [dm6]	A	C	1.092e^-4	0.968	INTRON CG16947
2R	9687752	2R_9687752_SNP [dm3] 2R_13800247_SNP [dm6]	C	T	1.098e^-4	0.968	INTRON Cpr50Cb
2R	17758700	2R_17758700_SNP [dm3] 2R_21871195_SNP [dm6]	G	T	1.100e^-4	0.968	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2L	13832377	2L_13832377_SNP [dm3] 2L_13832377_SNP [dm6]	T	G	1.104e^-4	0.968	NON_SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	1.105e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	14046639	3R_14046639_SNP [dm3] 3R_18220917_SNP [dm6]	G	T	1.105e^-4	0.968	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9705962	2L_9705962_SNP [dm3] 2L_9705962_SNP [dm6]	A	G	1.124e^-4	0.968	UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2R	10301889	2R_10301889_SNP [dm3] 2R_14414384_SNP [dm6]	T	C	1.135e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301898	2R_10301898_SNP [dm3] 2R_14414393_SNP [dm6]	C	T	1.135e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301899	2R_10301899_SNP [dm3] 2R_14414394_SNP [dm6]	A	C	1.135e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	10301900	2R_10301900_DEL [dm3] 2R_14414395_DEL [dm6]	AAACATTGCAA...	A	1.135e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
X	19853005	X_19853005_SNP [dm3] X_19958972_SNP [dm6]	C	T	1.144e^-4	0.968	UPSTREAM CG43784 INTRON CG12655
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	1.152e^-4	0.968	INTERGENIC
2R	14499147	2R_14499147_SNP [dm3] 2R_18611642_SNP [dm6]	C	T	1.155e^-4	0.968	UTR_5_PRIME GEFmeso DOWNSTREAM CG42697	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.160e^-4	0.968	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5978376	2L_5978376_SNP [dm3] 2L_5978376_SNP [dm6]	A	C	1.171e^-4	0.968	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	12993252	3R_12993252_SNP [dm3] 3R_17167530_SNP [dm6]	T	G	1.172e^-4	0.968	INTRON Mur89F
2L	4624631	2L_4624631_SNP [dm3] 2L_4624631_SNP [dm6]	C	G	1.175e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1596582	3L_1596582_SNP [dm3] 3L_1596582_SNP [dm6]	C	G	1.180e^-4	0.968	SYNONYMOUS_CODING CG13917	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9564663	2L_9564663_SNP [dm3] 2L_9564663_SNP [dm6]	A	C	1.195e^-4	0.968	INTRON jp
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	1.198e^-4	0.968	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	1451924	X_1451924_SNP [dm3] X_1557891_SNP [dm6]	G	C	1.203e^-4	0.968	DOWNSTREAM snmRNA:400 INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	9562984	2L_9562984_SNP [dm3] 2L_9562984_SNP [dm6]	G	A	1.213e^-4	0.968	INTRON jp
2L	9562988	2L_9562988_SNP [dm3] 2L_9562988_SNP [dm6]	G	T	1.213e^-4	0.968	INTRON jp
2R	3561534	2R_3561534_SNP [dm3] 2R_7674029_SNP [dm6]	C	T	1.217e^-4	0.968	UPSTREAM CG12107 INTRON mRpL52	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14239084	X_14239084_SNP [dm3] X_14345051_SNP [dm6]	C	T	1.228e^-4	0.968	INTRON dpr8
2R	7792376	2R_7792376_SNP [dm3] 2R_11904871_SNP [dm6]	C	A	1.232e^-4	0.968	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
2R	11583145	2R_11583145_SNP [dm3] 2R_15695640_SNP [dm6]	T	C	1.238e^-4	0.968	DOWNSTREAM CG33460 INTRON CG33461
2L	5455480	2L_5455480_SNP [dm3] 2L_5455480_SNP [dm6]	T	A	1.244e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	1.244e^-4	0.968	UTR_3_PRIME Sema-2a
2L	6192122	2L_6192122_SNP [dm3] 2L_6192122_SNP [dm6]	G	A	1.252e^-4	0.968	INTRON CG34380
3L	722590	3L_722590_SNP [dm3] 3L_722590_SNP [dm6]	A	T	1.267e^-4	0.968	INTERGENIC
3L	7722633	3L_7722633_SNP [dm3] 3L_7729533_SNP [dm6]	G	A	1.277e^-4	0.968	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	1.280e^-4	0.968	INTRON Atf3
X	12146592	X_12146592_DEL [dm3] X_12252559_DEL [dm6]	GGGAGGGAGCG...	G	1.303e^-4	0.968	INTRON Ten-a
3L	11348360	3L_11348360_SNP [dm3] 3L_11355260_SNP [dm6]	A	G	1.303e^-4	0.968	INTERGENIC
2L	2899377	2L_2899377_SNP [dm3] 2L_2899377_SNP [dm6]	C	A	1.312e^-4	0.968	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	9564765	2L_9564765_INS [dm3] 2L_9564765_INS [dm6]	T	TTAGCTACACA...	1.312e^-4	0.968	INTRON jp
2L	9564767	2L_9564767_DEL [dm3] 2L_9564767_DEL [dm6]	GTTAAATTACAATAC...	G	1.312e^-4	0.968	INTRON jp
3R	26643613	3R_26643613_SNP [dm3] 3R_30817891_SNP [dm6]	G	C	1.331e^-4	0.968	SYNONYMOUS_CODING cindr UTR_5_PRIME cindr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16634383	2R_16634383_SNP [dm3] 2R_20746878_SNP [dm6]	T	C	1.346e^-4	0.968	INTRON dpr
X	3862895	X_3862895_SNP [dm3] X_3968862_SNP [dm6]	T	C	1.356e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3L	16964282	3L_16964282_SNP [dm3] 3L_16971182_SNP [dm6]	A	C	1.357e^-4	0.968	INTRON Exn
2L	5455481	2L_5455481_SNP [dm3] 2L_5455481_SNP [dm6]	A	T	1.360e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16082807	X_16082807_SNP [dm3] X_16188774_SNP [dm6]	C	T	1.370e^-4	0.968	INTERGENIC
X	4865181	X_4865181_SNP [dm3] X_4971148_SNP [dm6]	A	T	1.377e^-4	0.968	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7796168	2R_7796168_SNP [dm3] 2R_11908663_SNP [dm6]	G	A	1.381e^-4	0.968	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16721288	X_16721288_SNP [dm3] X_16827255_SNP [dm6]	T	A	1.401e^-4	0.968	UTR_3_PRIME CG13004 DOWNSTREAM CG4829	TF binding site mE1_TFBS_chinmo
3L	14503567	3L_14503567_SNP [dm3] 3L_14510467_SNP [dm6]	C	G	1.404e^-4	0.968	UPSTREAM bbg INTRON bbg
3R	13325766	3R_13325766_DEL [dm3] 3R_17500044_DEL [dm6]	ACACACACA	A	1.407e^-4	0.968	INTRON Dscam3
2L	7010936	2L_7010936_SNP [dm3] 2L_7010936_SNP [dm6]	T	C	1.418e^-4	0.968	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	16875167	X_16875167_SNP [dm3] X_16981134_SNP [dm6]	G	A	1.421e^-4	0.968	INTRON CG45002
2R	15556068	2R_15556068_SNP [dm3] 2R_19668563_SNP [dm6]	C	T	1.438e^-4	0.968	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	1.443e^-4	0.968	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	1.448e^-4	0.968	INTRON fas
X	22221983	X_22221983_SNP [dm3] X_22820147_SNP [dm6]	A	G	1.450e^-4	0.968	INTERGENIC
2R	15782706	2R_15782706_SNP [dm3] 2R_19895201_SNP [dm6]	A	G	1.452e^-4	0.968	INTERGENIC
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	1.453e^-4	0.968	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
X	16082816	X_16082816_SNP [dm3] X_16188783_SNP [dm6]	G	C	1.457e^-4	0.968	INTERGENIC
2L	21903648	2L_21903648_SNP [dm3] 2L_21903648_SNP [dm6]	A	C	1.473e^-4	0.968	NON_SYNONYMOUS_CODING CG1421
2R	15899966	2R_15899966_DEL [dm3] 2R_20012461_DEL [dm6]	TGG	T	1.478e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_run
3R	3272472	3R_3272472_SNP [dm3] 3R_7446750_SNP [dm6]	T	C	1.489e^-4	0.968	INTERGENIC
2R	10301988	2R_10301988_SNP [dm3] 2R_14414483_SNP [dm6]	A	G	1.489e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	22499072	3R_22499072_SNP [dm3] 3R_26673350_SNP [dm6]	A	G	1.500e^-4	0.968	INTRON beat-VII
2L	7074793	2L_7074793_SNP [dm3] 2L_7074793_SNP [dm6]	A	G	1.502e^-4	0.968	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	1.502e^-4	0.968	INTRON Hs3st-A
2R	6458965	2R_6458965_SNP [dm3] 2R_10571460_SNP [dm6]	A	G	1.516e^-4	0.968	INTRON psq
X	4585460	X_4585460_SNP [dm3] X_4691427_SNP [dm6]	G	C	1.517e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	1.522e^-4	0.968	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
2R	20985269	2R_20985269_SNP [dm3] 2R_25097746_SNP [dm6]	T	A	1.524e^-4	0.968	INTRON lov	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2515493	3L_2515493_SNP [dm3] 3L_2515493_SNP [dm6]	C	T	1.525e^-4	0.968	INTRON Spn
3L	7428020	3L_7428020_SNP [dm3] 3L_7434920_SNP [dm6]	G	C	1.526e^-4	0.968	UTR_5_PRIME Rac2 INTRON CG42458	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9563176	2L_9563176_SNP [dm3] 2L_9563176_SNP [dm6]	G	A	1.529e^-4	0.968	INTRON jp
3L	3029583	3L_3029583_SNP [dm3] 3L_3029583_SNP [dm6]	C	G	1.536e^-4	0.968	INTERGENIC
3L	11854901	3L_11854901_SNP [dm3] 3L_11861801_SNP [dm6]	C	T	1.548e^-4	0.968	INTRON CG44837
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	1.550e^-4	0.968	DOWNSTREAM CR44629 & 1 other INTERGENIC
2R	10304139	2R_10304139_DEL [dm3] 2R_14416634_DEL [dm6]	AA	A	1.551e^-4	0.968	INTERGENIC
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	1.565e^-4	0.968	INTRON dpr3
X	16559537	X_16559537_INS [dm3] X_16665504_INS [dm6]	A	AGA	1.574e^-4	0.968	INTRON r
3R	26570744	3R_26570744_SNP [dm3] 3R_30745022_SNP [dm6]	A	T	1.574e^-4	0.968	NON_SYNONYMOUS_CODING Npc2g DOWNSTREAM CG15543 & 1 other	TF binding site mE1_TFBS_cad
3L	3598903	3L_3598903_SNP [dm3] 3L_3598903_SNP [dm6]	A	T	1.583e^-4	0.968	INTRON Eip63E
2L	9565650	2L_9565650_SNP [dm3] 2L_9565650_SNP [dm6]	C	T	1.587e^-4	0.968	UPSTREAM jp INTRON jp
3L	702297	3L_702297_SNP [dm3] 3L_702297_SNP [dm6]	C	T	1.588e^-4	0.968	INTERGENIC
X	16559414	X_16559414_SNP [dm3] X_16665381_SNP [dm6]	C	T	1.588e^-4	0.968	UPSTREAM CG15865 INTRON r
2L	4813088	2L_4813088_SNP [dm3] 2L_4813088_SNP [dm6]	A	C	1.588e^-4	0.968	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5769391	2L_5769391_SNP [dm3] 2L_5769391_SNP [dm6]	T	C	1.594e^-4	0.968	SYNONYMOUS_CODING CG9171 UPSTREAM CR31912	TF binding site mE1_TFBS_cad
3L	7722600	3L_7722600_SNP [dm3] 3L_7729500_SNP [dm6]	T	G	1.599e^-4	0.968	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	9943545	2L_9943545_SNP [dm3] 2L_9943545_SNP [dm6]	C	T	1.604e^-4	0.968	DOWNSTREAM CG4619 INTRON CG5853
3L	16544102	3L_16544102_SNP [dm3] 3L_16551002_SNP [dm6]	T	C	1.606e^-4	0.968	INTERGENIC
2L	5901812	2L_5901812_SNP [dm3] 2L_5901812_SNP [dm6]	A	C	1.618e^-4	0.968	INTERGENIC
X	20867430	X_20867430_SNP [dm3] X_20996403_SNP [dm6]	C	T	1.628e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	1.636e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9686227	3L_9686227_SNP [dm3] 3L_9693127_SNP [dm6]	G	A	1.649e^-4	0.968	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
X	2326605	X_2326605_SNP [dm3] X_2432572_SNP [dm6]	A	G	1.651e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	9560618	2L_9560618_SNP [dm3] 2L_9560618_SNP [dm6]	C	T	1.655e^-4	0.968	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad
2R	7409989	2R_7409989_SNP [dm3] 2R_11522484_SNP [dm6]	C	A	1.657e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9562235	2L_9562235_SNP [dm3] 2L_9562235_SNP [dm6]	A	T	1.666e^-4	0.968	INTRON jp
2R	8277585	2R_8277585_SNP [dm3] 2R_12390080_SNP [dm6]	C	A	1.666e^-4	0.968	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	1.681e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	14089089	2L_14089089_SNP [dm3] 2L_14089089_SNP [dm6]	T	C	1.685e^-4	0.968	INTRON nAChRalpha5
3R	22227453	3R_22227453_SNP [dm3] 3R_26401731_SNP [dm6]	A	T	1.691e^-4	0.968	DOWNSTREAM ppk15 INTERGENIC
2R	15899920	2R_15899920_SNP [dm3] 2R_20012415_SNP [dm6]	T	C	1.697e^-4	0.968	INTERGENIC
2L	9564582	2L_9564582_SNP [dm3] 2L_9564582_SNP [dm6]	G	A	1.697e^-4	0.968	INTRON jp
X	22231583	X_22231583_SNP [dm3] X_22829747_SNP [dm6]	G	T	1.698e^-4	0.968	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	13006565	3R_13006565_SNP [dm3] 3R_17180843_SNP [dm6]	G	A	1.711e^-4	0.968	INTRON Mur89F
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	1.712e^-4	0.968	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	8990059	2R_8990059_SNP [dm3] 2R_13102554_SNP [dm6]	T	G	1.719e^-4	0.968	INTERGENIC
2L	6891432	2L_6891432_SNP [dm3] 2L_6891432_SNP [dm6]	C	T	1.721e^-4	0.968	INTRON Nlg2
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	1.722e^-4	0.968	UPSTREAM para INTERGENIC
3R	26540342	3R_26540342_SNP [dm3] 3R_30714620_SNP [dm6]	C	T	1.737e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7812848	2R_7812848_SNP [dm3] 2R_11925343_SNP [dm6]	A	G	1.745e^-4	0.968	INTERGENIC
3R	21394096	3R_21394096_SNP [dm3] 3R_25568374_SNP [dm6]	A	T	1.756e^-4	0.968	INTRON msi
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	1.756e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6148846	2L_6148846_SNP [dm3] 2L_6148846_SNP [dm6]	T	G	1.757e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8179682	X_8179682_SNP [dm3] X_8285649_SNP [dm6]	C	T	1.765e^-4	0.968	SYNONYMOUS_CODING nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.768e^-4	0.968	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26540316	3R_26540316_SNP [dm3] 3R_30714594_SNP [dm6]	A	C	1.769e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12146727	X_12146727_SNP [dm3] X_12252694_SNP [dm6]	G	A	1.776e^-4	0.968	INTRON Ten-a
X	4585531	X_4585531_INS [dm3] X_4691498_INS [dm6]	G	GAGTGTGTG	1.779e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1411485	3R_1411485_SNP [dm3] 3R_5585763_SNP [dm6]	G	T	1.784e^-4	0.968	NON_SYNONYMOUS_CODING CG2926	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23867969	3R_23867969_SNP [dm3] 3R_28042247_SNP [dm6]	G	C	1.784e^-4	0.968	INTRON CG34362
2L	7746751	2L_7746751_SNP [dm3] 2L_7746751_SNP [dm6]	C	T	1.789e^-4	0.968	UPSTREAM CG7211 INTERGENIC
2L	9562250	2L_9562250_SNP [dm3] 2L_9562250_SNP [dm6]	G	A	1.808e^-4	0.968	INTRON jp
3R	26540317	3R_26540317_SNP [dm3] 3R_30714595_SNP [dm6]	G	A	1.814e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5913141	2L_5913141_SNP [dm3] 2L_5913141_SNP [dm6]	C	T	1.823e^-4	0.968	SYNONYMOUS_CODING bchs
2R	17682858	2R_17682858_SNP [dm3] 2R_21795353_SNP [dm6]	G	T	1.827e^-4	0.968	INTERGENIC
3R	3875419	3R_3875419_SNP [dm3] 3R_8049697_SNP [dm6]	T	C	1.833e^-4	0.968	UTR_5_PRIME CG43061 DOWNSTREAM CG43618 INTRON CG43060
2L	8236804	2L_8236804_SNP [dm3] 2L_8236804_SNP [dm6]	C	A	1.835e^-4	0.968	INTRON Pvr
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	1.860e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	7411383	2R_7411383_SNP [dm3] 2R_11523878_SNP [dm6]	T	G	1.872e^-4	0.968	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2326545	X_2326545_SNP [dm3] X_2432512_SNP [dm6]	G	T	1.882e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9560523	2L_9560523_SNP [dm3] 2L_9560523_SNP [dm6]	T	A	1.885e^-4	0.968	UPSTREAM jp INTRON jp	TF binding site mE1_TFBS_cad
3L	3471715	3L_3471715_SNP [dm3] 3L_3471715_SNP [dm6]	G	A	1.895e^-4	0.968	UTR_3_PRIME CG32267 UPSTREAM CG14971 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22227371	3R_22227371_SNP [dm3] 3R_26401649_SNP [dm6]	G	A	1.902e^-4	0.968	DOWNSTREAM ppk15 INTERGENIC
2L	5455478	2L_5455478_SNP [dm3] 2L_5455478_SNP [dm6]	T	A	1.902e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7411648	2R_7411648_SNP [dm3] 2R_11524143_SNP [dm6]	G	A	1.915e^-4	0.968	UTR_3_PRIME en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21477110	3R_21477110_SNP [dm3] 3R_25651388_SNP [dm6]	A	G	1.915e^-4	0.968	UPSTREAM mir-92b DOWNSTREAM jigr1 INTERGENIC	TF binding site mE1_TFBS_cad
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	1.917e^-4	0.968	INTRON hdc
2L	18175546	2L_18175546_SNP [dm3] 2L_18175546_SNP [dm6]	T	C	1.920e^-4	0.968	INTRON CG42750
2L	19329736	2L_19329736_SNP [dm3] 2L_19329736_SNP [dm6]	T	G	1.920e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5691071	3L_5691071_SNP [dm3] 3L_5697971_SNP [dm6]	T	C	1.925e^-4	0.968	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4585372	X_4585372_SNP [dm3] X_4691339_SNP [dm6]	C	G	1.925e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17318619	X_17318619_SNP [dm3] X_17424586_SNP [dm6]	A	G	1.928e^-4	0.968	INTRON CG12994 & 1 other
X	17318628	X_17318628_SNP [dm3] X_17424595_SNP [dm6]	T	C	1.928e^-4	0.968	INTRON CG12994 & 1 other
X	4484066	X_4484066_INS [dm3] X_4590033_INS [dm6]	A	AAA	1.930e^-4	0.968	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10979565	3L_10979565_SNP [dm3] 3L_10986465_SNP [dm6]	G	A	1.943e^-4	0.968	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23338855	3R_23338855_SNP [dm3] 3R_27513133_SNP [dm6]	G	A	1.952e^-4	0.968	INTERGENIC
2L	5135986	2L_5135986_SNP [dm3] 2L_5135986_SNP [dm6]	C	A	1.953e^-4	0.968	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	16520614	2L_16520614_DEL [dm3] 2L_16520614_DEL [dm6]	TTT	T	1.957e^-4	0.968	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	1.961e^-4	0.968	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2L	5135959	2L_5135959_SNP [dm3] 2L_5135959_SNP [dm6]	C	G	1.968e^-4	0.968	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	1.973e^-4	0.968	INTRON rgn
3R	25548762	3R_25548762_SNP [dm3] 3R_29723040_SNP [dm6]	A	C	1.978e^-4	0.968	UPSTREAM Pcd DOWNSTREAM CG15506 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA
2R	7410213	2R_7410213_INS [dm3] 2R_11522708_INS [dm6]	A	AA	1.979e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14389610	2L_14389610_SNP [dm3] 2L_14389610_SNP [dm6]	A	G	2.000e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7796195	2R_7796195_SNP [dm3] 2R_11908690_SNP [dm6]	T	G	2.005e^-4	0.968	INTRON CG13183	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	6790498	X_6790498_SNP [dm3] X_6896465_SNP [dm6]	C	T	2.010e^-4	0.968	INTERGENIC
2R	11086275	2R_11086275_SNP [dm3] 2R_15198770_SNP [dm6]	A	T	2.012e^-4	0.968	DOWNSTREAM GPHR INTERGENIC
3R	18858959	3R_18858959_SNP [dm3] 3R_23033237_SNP [dm6]	G	C	2.020e^-4	0.968	DOWNSTREAM CG13833 INTERGENIC
2R	9198667	2R_9198667_SNP [dm3] 2R_13311162_SNP [dm6]	A	G	2.031e^-4	0.968	INTERGENIC
3L	10964916	3L_10964916_SNP [dm3] 3L_10971816_SNP [dm6]	A	T	2.038e^-4	0.968	UPSTREAM CG14147 INTERGENIC
3L	16718429	3L_16718429_SNP [dm3] 3L_16725329_SNP [dm6]	G	C	2.041e^-4	0.968	UTR_3_PRIME CG13026 & 1 other DOWNSTREAM Dab & 1 other
X	4584286	X_4584286_SNP [dm3] X_4690253_SNP [dm6]	A	G	2.045e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18888654	2R_18888654_SNP [dm3] 2R_23001131_SNP [dm6]	C	G	2.052e^-4	0.968	INTRON twi
X	4584116	X_4584116_INS [dm3] X_4690083_INS [dm6]	A	AA	2.053e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6461108	2L_6461108_SNP [dm3] 2L_6461108_SNP [dm6]	T	C	2.055e^-4	0.968	INTRON CG16947
2L	13868072	2L_13868072_SNP [dm3] 2L_13868072_SNP [dm6]	T	C	2.063e^-4	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15451813	2R_15451813_SNP [dm3] 2R_19564308_SNP [dm6]	A	T	2.063e^-4	0.968	DOWNSTREAM tRNA:CR33535 INTRON sm
3R	26619006	3R_26619006_SNP [dm3] 3R_30793284_SNP [dm6]	G	T	2.064e^-4	0.968	SYNONYMOUS_CODING wts	TF binding site mE1_TFBS_chinmo
2L	9570049	2L_9570049_SNP [dm3] 2L_9570049_SNP [dm6]	C	G	2.064e^-4	0.968	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14903018	3R_14903018_SNP [dm3] 3R_19077296_SNP [dm6]	A	G	2.069e^-4	0.968	INTRON cdi
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	2.078e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16621768	2R_16621768_SNP [dm3] 2R_20734263_SNP [dm6]	T	C	2.079e^-4	0.968	INTRON dpr
3R	15968569	3R_15968569_SNP [dm3] 3R_20142847_SNP [dm6]	C	T	2.085e^-4	0.968	INTERGENIC
X	11569144	X_11569144_SNP [dm3] X_11675111_SNP [dm6]	T	A	2.088e^-4	0.968	INTRON Ptp10D	TF binding site mE1_TFBS_cad
2R	18151215	2R_18151215_SNP [dm3] 2R_22263710_SNP [dm6]	A	T	2.089e^-4	0.968	INTRON dve
3R	26540328	3R_26540328_SNP [dm3] 3R_30714606_SNP [dm6]	T	A	2.090e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9564350	2L_9564350_SNP [dm3] 2L_9564350_SNP [dm6]	C	A	2.093e^-4	0.968	INTRON jp
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	2.097e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	9557217	2L_9557217_SNP [dm3] 2L_9557217_SNP [dm6]	T	C	2.097e^-4	0.968	INTRON jp
X	2620098	X_2620098_SNP [dm3] X_2726065_SNP [dm6]	T	A	2.100e^-4	0.968	NON_SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	2.101e^-4	0.968	INTRON Wnt6
2R	7792377	2R_7792377_SNP [dm3] 2R_11904872_SNP [dm6]	T	A	2.109e^-4	0.968	UPSTREAM MCPH1 INTRON CG13183	TF binding site mE1_TFBS_inv
2L	6055306	2L_6055306_SNP [dm3] 2L_6055306_SNP [dm6]	G	T	2.111e^-4	0.968	INTRON CG13995	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	2.120e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	18038349	X_18038349_SNP [dm3] X_18144316_SNP [dm6]	T	A	2.125e^-4	0.968	INTERGENIC
3L	19012325	3L_19012325_SNP [dm3] 3L_19019225_SNP [dm6]	T	C	2.153e^-4	0.968	INTRON nkd
3L	13078953	3L_13078953_SNP [dm3] 3L_13085853_SNP [dm6]	G	T	2.160e^-4	0.968	DOWNSTREAM CG17300 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19852773	X_19852773_SNP [dm3] X_19958740_SNP [dm6]	G	T	2.167e^-4	0.968	SYNONYMOUS_CODING CG12655 UPSTREAM CG43784
2R	11335948	2R_11335948_SNP [dm3] 2R_15448443_SNP [dm6]	C	T	2.172e^-4	0.968	INTRON CG43729
3L	20268644	3L_20268644_SNP [dm3] 3L_20275544_SNP [dm6]	C	T	2.178e^-4	0.968	UPSTREAM CG17122 INTRON gogo	TF binding site mE1_TFBS_HSA
2L	9564351	2L_9564351_SNP [dm3] 2L_9564351_SNP [dm6]	A	T	2.185e^-4	0.968	INTRON jp
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	2.191e^-4	0.968	INTERGENIC
X	5663357	X_5663357_DEL [dm3] X_5769324_DEL [dm6]	AAAGT	A	2.205e^-4	0.968	INTRON CG42699 & 1 other
2R	17962080	2R_17962080_SNP [dm3] 2R_22074575_SNP [dm6]	T	C	2.209e^-4	0.968	SYNONYMOUS_CODING CG2921	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	9524715	X_9524715_SNP [dm3] X_9630682_SNP [dm6]	C	T	2.215e^-4	0.968	SYNONYMOUS_CODING l_1_G0232	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	2.217e^-4	0.968	UPSTREAM para INTERGENIC
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	2.219e^-4	0.968	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	1244920	2R_1244920_SNP [dm3] 2R_5357415_SNP [dm6]	T	C	2.220e^-4	0.968	INTERGENIC
3L	14418084	3L_14418084_SNP [dm3] 3L_14424984_SNP [dm6]	G	A	2.225e^-4	0.968	INTRON bbg
3R	16407317	3R_16407317_SNP [dm3] 3R_20581595_SNP [dm6]	C	T	2.226e^-4	0.968	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	2.238e^-4	0.968	INTERGENIC
2R	8326865	2R_8326865_INS [dm3] 2R_12439360_INS [dm6]	A	ATCTG	2.242e^-4	0.968	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7010930	2L_7010930_SNP [dm3] 2L_7010930_SNP [dm6]	A	T	2.252e^-4	0.968	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	9749386	3L_9749386_SNP [dm3] 3L_9756286_SNP [dm6]	G	A	2.253e^-4	0.968	INTRON CG42268
X	10415064	X_10415064_SNP [dm3] X_10521031_SNP [dm6]	A	C	2.268e^-4	0.968	INTRON spri
2L	6854019	2L_6854019_SNP [dm3] 2L_6854019_SNP [dm6]	G	T	2.272e^-4	0.968	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	2.274e^-4	0.968	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10979725	3L_10979725_SNP [dm3] 3L_10986625_SNP [dm6]	A	T	2.275e^-4	0.968	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	2326591	X_2326591_SNP [dm3] X_2432558_SNP [dm6]	A	G	2.297e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	19413659	2R_19413659_SNP [dm3] 2R_23526136_SNP [dm6]	C	T	2.299e^-4	0.968	SYNONYMOUS_CODING mi	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	2.302e^-4	0.968	UPSTREAM para INTERGENIC
2R	1437389	2R_1437389_SNP [dm3] 2R_5549884_SNP [dm6]	A	G	2.309e^-4	0.968	DOWNSTREAM CG30438 INTERGENIC
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	2.310e^-4	0.968	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	26540318	3R_26540318_DEL [dm3] 3R_30714596_DEL [dm6]	ACT	A	2.316e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26540322	3R_26540322_DEL [dm3] 3R_30714600_DEL [dm6]	GAT	G	2.316e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8921245	2R_8921245_SNP [dm3] 2R_13033740_SNP [dm6]	T	C	2.319e^-4	0.968	INTERGENIC
3R	16030828	3R_16030828_SNP [dm3] 3R_20205106_SNP [dm6]	C	T	2.335e^-4	0.968	INTRON Nlg4	TF binding site mE1_TFBS_Trl
2L	18175558	2L_18175558_SNP [dm3] 2L_18175558_SNP [dm6]	G	A	2.337e^-4	0.968	INTRON CG42750
2L	2917542	2L_2917542_SNP [dm3] 2L_2917542_SNP [dm6]	T	A	2.338e^-4	0.968	INTRON lilli	TF binding site BDTNP1_TFBS_twi
2L	12475436	2L_12475436_SNP [dm3] 2L_12475436_SNP [dm6]	C	T	2.341e^-4	0.968	INTRON bun
2L	9564348	2L_9564348_SNP [dm3] 2L_9564348_SNP [dm6]	T	G	2.343e^-4	0.968	INTRON jp
X	9222916	X_9222916_SNP [dm3] X_9328883_SNP [dm6]	T	A	2.347e^-4	0.968	DOWNSTREAM CG34450 INTRON CG34449
3L	3843896	3L_3843896_SNP [dm3] 3L_3843896_SNP [dm6]	A	G	2.352e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11339784	2R_11339784_SNP [dm3] 2R_15452279_SNP [dm6]	T	A	2.353e^-4	0.968	INTRON CG43729
2R	11340059	2R_11340059_SNP [dm3] 2R_15452554_SNP [dm6]	T	C	2.353e^-4	0.968	INTRON CG43729
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	2.353e^-4	0.968	UTR_3_PRIME CG42741 INTRON twi
X	1453165	X_1453165_SNP [dm3] X_1559132_SNP [dm6]	A	T	2.362e^-4	0.968	UPSTREAM snmRNA:400 INTRON Mur2B
3R	12993278	3R_12993278_SNP [dm3] 3R_17167556_SNP [dm6]	C	T	2.375e^-4	0.968	INTRON Mur89F
2L	18420946	2L_18420946_SNP [dm3] 2L_18420946_SNP [dm6]	C	T	2.395e^-4	0.968	INTERGENIC
2L	18175547	2L_18175547_SNP [dm3] 2L_18175547_SNP [dm6]	G	A	2.396e^-4	0.968	INTRON CG42750
2R	12521556	2R_12521556_SNP [dm3] 2R_16634051_SNP [dm6]	T	C	2.401e^-4	0.968	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12514978	X_12514978_SNP [dm3] X_12620945_SNP [dm6]	T	C	2.405e^-4	0.968	UTR_3_PRIME CG11085
2R	10301877	2R_10301877_SNP [dm3] 2R_14414372_SNP [dm6]	T	A	2.425e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
X	15673819	X_15673819_SNP [dm3] X_15779786_SNP [dm6]	T	G	2.426e^-4	0.968	NON_SYNONYMOUS_CODING CG43673 DOWNSTREAM Efhc1.1
3L	8207850	3L_8207850_SNP [dm3] 3L_8214750_SNP [dm6]	T	C	2.428e^-4	0.968	UPSTREAM CG8012 INTERGENIC
3L	7988490	3L_7988490_SNP [dm3] 3L_7995390_SNP [dm6]	T	A	2.447e^-4	0.968	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9560910	2L_9560910_SNP [dm3] 2L_9560910_SNP [dm6]	A	C	2.448e^-4	0.968	UPSTREAM jp INTRON jp
3L	14415161	3L_14415161_SNP [dm3] 3L_14422061_SNP [dm6]	G	T	2.452e^-4	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	2.453e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	2.458e^-4	0.968	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	2.458e^-4	0.968	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	2.462e^-4	0.968	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2060601	2L_2060601_SNP [dm3] 2L_2060601_SNP [dm6]	G	A	2.468e^-4	0.968	INTRON dpr3
3R	26540356	3R_26540356_SNP [dm3] 3R_30714634_SNP [dm6]	A	C	2.468e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6953271	2L_6953271_SNP [dm3] 2L_6953271_SNP [dm6]	T	C	2.469e^-4	0.968	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
3L	19257198	3L_19257198_DEL [dm3] 3L_19264098_DEL [dm6]	TAA	T	2.479e^-4	0.968	UTR_5_PRIME Max UPSTREAM CG9666 & 1 other INTRON CG9666 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	2.485e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	9564637	2L_9564637_SNP [dm3] 2L_9564637_SNP [dm6]	A	T	2.493e^-4	0.968	INTRON jp
2L	12874276	2L_12874276_SNP [dm3] 2L_12874276_SNP [dm6]	C	A	2.493e^-4	0.968	INTERGENIC
3L	6938113	3L_6938113_SNP [dm3] 3L_6945013_SNP [dm6]	T	A	2.493e^-4	0.968	INTRON tow	TF binding site mE1_TFBS_Kr
2R	7199515	2R_7199515_SNP [dm3] 2R_11312010_SNP [dm6]	C	A	2.496e^-4	0.968	SYNONYMOUS_CODING nompA DOWNSTREAM CG43114	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17784989	2R_17784989_SNP [dm3] 2R_21897484_SNP [dm6]	T	A	2.498e^-4	0.968	INTRON Fili
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	2.501e^-4	0.968	INTRON trol
3L	14517401	3L_14517401_INS [dm3] 3L_14524301_INS [dm6]	A	AA	2.511e^-4	0.968	INTRON bbg
X	4585380	X_4585380_SNP [dm3] X_4691347_SNP [dm6]	C	G	2.520e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2326607	X_2326607_SNP [dm3] X_2432574_SNP [dm6]	A	G	2.521e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	16407134	3R_16407134_SNP [dm3] 3R_20581412_SNP [dm6]	A	G	2.526e^-4	0.968	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407141	3R_16407141_SNP [dm3] 3R_20581419_SNP [dm6]	G	T	2.526e^-4	0.968	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407146	3R_16407146_SNP [dm3] 3R_20581424_SNP [dm6]	G	C	2.526e^-4	0.968	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	24189722	3R_24189722_SNP [dm3] 3R_28364000_SNP [dm6]	T	C	2.536e^-4	0.968	INTERGENIC
3L	6879604	3L_6879604_SNP [dm3] 3L_6886504_SNP [dm6]	A	G	2.538e^-4	0.968	INTERGENIC
2L	9556251	2L_9556251_SNP [dm3] 2L_9556251_SNP [dm6]	T	C	2.538e^-4	0.968	UTR_5_PRIME jp
3L	10699798	3L_10699798_SNP [dm3] 3L_10706698_SNP [dm6]	A	T	2.543e^-4	0.968	INTERGENIC
2L	14085639	2L_14085639_SNP [dm3] 2L_14085639_SNP [dm6]	G	T	2.544e^-4	0.968	INTRON nAChRalpha5
3R	24924588	3R_24924588_SNP [dm3] 3R_29098866_SNP [dm6]	C	G	2.551e^-4	0.968	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	17177414	3L_17177414_SNP [dm3] 3L_17184314_SNP [dm6]	T	G	2.560e^-4	0.968	INTRON Rbp6
2R	11604781	2R_11604781_SNP [dm3] 2R_15717276_SNP [dm6]	C	T	2.566e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21918175	X_21918175_SNP [dm3] X_22516339_SNP [dm6]	A	G	2.570e^-4	0.968	INTRON CG17600
2R	19117745	2R_19117745_SNP [dm3] 2R_23230222_SNP [dm6]	G	T	2.581e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16785887	2R_16785887_SNP [dm3] 2R_20898382_SNP [dm6]	T	C	2.585e^-4	0.968	UPSTREAM otp INTRON otp EXON CR43160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10807748	2R_10807748_SNP [dm3] 2R_14920243_SNP [dm6]	T	C	2.587e^-4	0.968	INTRON CG10249	TF binding site mE1_TFBS_cnc
2R	14912751	2R_14912751_SNP [dm3] 2R_19025246_SNP [dm6]	G	C	2.592e^-4	0.968	INTRON 5-HT1B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11340711	2R_11340711_SNP [dm3] 2R_15453206_SNP [dm6]	C	A	2.594e^-4	0.968	INTRON CG43729
X	11115274	X_11115274_SNP [dm3] X_11221241_SNP [dm6]	C	T	2.617e^-4	0.968	UTR_3_PRIME CG44422
2L	18175543	2L_18175543_DEL [dm3] 2L_18175543_DEL [dm6]	TA	T	2.624e^-4	0.968	INTRON CG42750
2L	21909546	2L_21909546_DEL [dm3] 2L_21909546_DEL [dm6]	ACATCGACAGACG...	A	2.629e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	2.638e^-4	0.968	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26540331	3R_26540331_SNP [dm3] 3R_30714609_SNP [dm6]	C	A	2.643e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	2.647e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5959385	2L_5959385_INS [dm3] 2L_5959385_INS [dm6]	T	TTAA	2.654e^-4	0.968	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	2.656e^-4	0.968	INTRON a
3L	15859835	3L_15859835_INS [dm3] 3L_15866735_INS [dm6]	G	GG	2.673e^-4	0.968	INTRON pHCl
2L	5903361	2L_5903361_SNP [dm3] 2L_5903361_SNP [dm6]	A	G	2.701e^-4	0.968	UTR_3_PRIME CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3470498	2R_3470498_SNP [dm3] 2R_7582993_SNP [dm6]	C	G	2.702e^-4	0.968	INTRON blow	TF binding site mE1_TFBS_chinmo
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	2.703e^-4	0.968	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
X	4491420	X_4491420_SNP [dm3] X_4597387_SNP [dm6]	A	G	2.703e^-4	0.968	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	2.704e^-4	0.968	INTRON Sh
3L	1326592	3L_1326592_SNP [dm3] 3L_1326592_SNP [dm6]	A	G	2.713e^-4	0.968	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10851472	2L_10851472_SNP [dm3] 2L_10851472_SNP [dm6]	G	C	2.731e^-4	0.968	SYNONYMOUS_CODING CG43129 UTR_5_PRIME CG43129 UPSTREAM porin	TF binding site BDTNP1_TFBS_dl
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	2.739e^-4	0.968	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17783808	2R_17783808_SNP [dm3] 2R_21896303_SNP [dm6]	G	C	2.741e^-4	0.968	INTRON Fili	TF binding site BDTNP1_TFBS_twi
3R	16030909	3R_16030909_SNP [dm3] 3R_20205187_SNP [dm6]	C	T	2.744e^-4	0.968	INTRON Nlg4
2R	11326862	2R_11326862_SNP [dm3] 2R_15439357_SNP [dm6]	C	T	2.749e^-4	0.968	INTRON CG43729
3R	13821503	3R_13821503_SNP [dm3] 3R_17995781_SNP [dm6]	T	A	2.750e^-4	0.968	INTRON cpo
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	2.751e^-4	0.968	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
3R	11344730	3R_11344730_SNP [dm3] 3R_15519008_SNP [dm6]	T	C	2.752e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	2.756e^-4	0.968	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	2.757e^-4	0.968	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19567824	2R_19567824_SNP [dm3] 2R_23680301_SNP [dm6]	C	A	2.759e^-4	0.968	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
2L	9562904	2L_9562904_SNP [dm3] 2L_9562904_SNP [dm6]	T	C	2.765e^-4	0.968	INTRON jp
2L	6780312	2L_6780312_DEL [dm3] 2L_6780312_DEL [dm6]	TT	T	2.769e^-4	0.968	INTRON nrv1
2L	15430333	2L_15430333_INS [dm3] 2L_15430333_INS [dm6]	G	GCTG	2.771e^-4	0.968	INTERGENIC
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	2.774e^-4	0.968	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	9562876	2L_9562876_SNP [dm3] 2L_9562876_SNP [dm6]	A	T	2.776e^-4	0.968	INTRON jp
3R	16407364	3R_16407364_SNP [dm3] 3R_20581642_SNP [dm6]	A	T	2.785e^-4	0.968	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	2.785e^-4	0.968	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2R	7814430	2R_7814430_SNP [dm3] 2R_11926925_SNP [dm6]	T	C	2.785e^-4	0.968	INTERGENIC
2L	16569937	2L_16569937_SNP [dm3] 2L_16569937_SNP [dm6]	A	G	2.790e^-4	0.968	INTRON CG42389
X	22231644	X_22231644_SNP [dm3] X_22829808_SNP [dm6]	C	T	2.799e^-4	0.968	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	6907442	2L_6907442_SNP [dm3] 2L_6907442_SNP [dm6]	G	A	2.800e^-4	0.968	SYNONYMOUS_CODING CG13773 UPSTREAM Rat1 DOWNSTREAM Nlg2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	19545653	2R_19545653_SNP [dm3] 2R_23658130_SNP [dm6]	A	G	2.815e^-4	0.968	INTRON Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17241092	X_17241092_SNP [dm3] X_17347059_SNP [dm6]	C	A	2.819e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_sbb
3R	19292339	3R_19292339_SNP [dm3] 3R_23466617_SNP [dm6]	A	T	2.829e^-4	0.968	INTRON CG4374
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	2.829e^-4	0.968	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12845743	X_12845743_SNP [dm3] X_12951710_SNP [dm6]	G	A	2.831e^-4	0.968	INTRON hec
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	2.834e^-4	0.968	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	2.834e^-4	0.968	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	2.859e^-4	0.968	INTRON a
2L	5455458	2L_5455458_SNP [dm3] 2L_5455458_SNP [dm6]	T	G	2.859e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9523880	2R_9523880_SNP [dm3] 2R_13636375_SNP [dm6]	G	A	2.866e^-4	0.968	INTRON fas
2R	11325802	2R_11325802_SNP [dm3] 2R_15438297_SNP [dm6]	A	G	2.874e^-4	0.968	INTRON CG43729
2R	20348742	2R_20348742_SNP [dm3] 2R_24461219_SNP [dm6]	G	T	2.877e^-4	0.968	INTRON CG13579
2R	1897288	2R_1897288_DEL [dm3] 2R_6009783_DEL [dm6]	AATCAAAACA	T	2.880e^-4	0.968	INTRON Src42A
2R	17769474	2R_17769474_SNP [dm3] 2R_21881969_SNP [dm6]	C	T	2.880e^-4	0.968	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	2.893e^-4	0.968	INTRON CG32206
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	2.897e^-4	0.968	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
3R	15165831	3R_15165831_DEL [dm3] 3R_19340109_DEL [dm6]	AA	A	2.903e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	9578728	2L_9578728_SNP [dm3] 2L_9578728_SNP [dm6]	T	C	2.904e^-4	0.968	UTR_3_PRIME CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2R	18888655	2R_18888655_SNP [dm3] 2R_23001132_SNP [dm6]	C	A	2.923e^-4	0.968	INTRON twi
X	8647672	X_8647672_SNP [dm3] X_8753639_SNP [dm6]	C	T	2.928e^-4	0.968	INTERGENIC
2R	17785404	2R_17785404_SNP [dm3] 2R_21897899_SNP [dm6]	C	T	2.935e^-4	0.968	INTRON Fili
2L	18127038	2L_18127038_SNP [dm3] 2L_18127038_SNP [dm6]	A	C	2.940e^-4	0.968	INTRON CG5758
X	8647666	X_8647666_SNP [dm3] X_8753633_SNP [dm6]	T	C	2.985e^-4	0.968	INTERGENIC
2R	17784944	2R_17784944_SNP [dm3] 2R_21897439_SNP [dm6]	T	A	2.988e^-4	0.968	INTRON Fili
3R	22887606	3R_22887606_SNP [dm3] 3R_27061884_SNP [dm6]	A	G	3.000e^-4	0.968	UPSTREAM CG34292 INTRON Nep5
3R	22887607	3R_22887607_SNP [dm3] 3R_27061885_SNP [dm6]	T	A	3.000e^-4	0.968	UPSTREAM CG34292 INTRON Nep5
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	3.002e^-4	0.968	INTRON CG13579
X	4584394	X_4584394_SNP [dm3] X_4690361_SNP [dm6]	A	T	3.007e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	3.034e^-4	0.968	DOWNSTREAM Bace INTRON Dh31
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	3.048e^-4	0.968	INTRON kirre
2L	21909561	2L_21909561_DEL [dm3] 2L_21909561_DEL [dm6]	ATC	A	3.052e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14642148	2L_14642148_SNP [dm3] 2L_14642148_SNP [dm6]	A	G	3.066e^-4	0.968	INTRON osp
2L	14642152	2L_14642152_SNP [dm3] 2L_14642152_SNP [dm6]	C	G	3.066e^-4	0.968	INTRON osp
2L	10089177	2L_10089177_SNP [dm3] 2L_10089177_SNP [dm6]	T	C	3.074e^-4	0.968	INTRON CG44153
3L	8233448	3L_8233448_SNP [dm3] 3L_8240348_SNP [dm6]	T	G	3.079e^-4	0.968	NON_SYNONYMOUS_CODING CG7213 UPSTREAM Dscam4 INTRON Dscam4
X	14459846	X_14459846_SNP [dm3] X_14565813_SNP [dm6]	T	C	3.080e^-4	0.968	INTERGENIC
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	3.081e^-4	0.968	INTRON fas
2L	7746068	2L_7746068_SNP [dm3] 2L_7746068_SNP [dm6]	T	A	3.083e^-4	0.968	INTERGENIC
2L	11185606	2L_11185606_SNP [dm3] 2L_11185606_SNP [dm6]	T	C	3.106e^-4	0.968	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	6973023	3R_6973023_SNP [dm3] 3R_11147301_SNP [dm6]	T	C	3.106e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9566266	2L_9566266_SNP [dm3] 2L_9566266_SNP [dm6]	T	A	3.110e^-4	0.968	UPSTREAM jp INTRON jp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	3.110e^-4	0.968	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	9562632	2L_9562632_DEL [dm3] 2L_9562632_DEL [dm6]	CGACTATGCACTTACAC...	C	3.112e^-4	0.968	INTRON jp
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	3.123e^-4	0.968	INTERGENIC
3R	24824591	3R_24824591_SNP [dm3] 3R_28998869_SNP [dm6]	A	G	3.124e^-4	0.968	INTRON wat
X	12146757	X_12146757_SNP [dm3] X_12252724_SNP [dm6]	G	A	3.127e^-4	0.968	INTRON Ten-a
3R	10272102	3R_10272102_SNP [dm3] 3R_14446380_SNP [dm6]	C	A	3.130e^-4	0.968	INTRON cv-c	TF binding site BDTNP1_TFBS_da
2L	6809267	2L_6809267_SNP [dm3] 2L_6809267_SNP [dm6]	T	A	3.134e^-4	0.968	INTERGENIC
X	3862709	X_3862709_SNP [dm3] X_3968676_SNP [dm6]	A	G	3.143e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	14495169	3L_14495169_SNP [dm3] 3L_14502069_SNP [dm6]	T	C	3.149e^-4	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3L	888447	3L_888447_SNP [dm3] 3L_888447_SNP [dm6]	C	A	3.150e^-4	0.968	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
X	14461944	X_14461944_INS [dm3] X_14567911_INS [dm6]	T	TAT	3.162e^-4	0.968	INTERGENIC
3L	3426791	3L_3426791_SNP [dm3] 3L_3426791_SNP [dm6]	G	T	3.162e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	3426808	3L_3426808_SNP [dm3] 3L_3426808_SNP [dm6]	C	T	3.162e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3426811	3L_3426811_SNP [dm3] 3L_3426811_SNP [dm6]	C	T	3.162e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	22231585	X_22231585_SNP [dm3] X_22829749_SNP [dm6]	G	A	3.162e^-4	0.968	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	21800050	3R_21800050_SNP [dm3] 3R_25974328_SNP [dm6]	C	G	3.168e^-4	0.968	INTRON CG42261
2L	9564312	2L_9564312_SNP [dm3] 2L_9564312_SNP [dm6]	C	T	3.171e^-4	0.968	INTRON jp
2L	9561932	2L_9561932_SNP [dm3] 2L_9561932_SNP [dm6]	C	G	3.179e^-4	0.968	INTRON jp
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	3.179e^-4	0.968	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	15166262	3R_15166262_SNP [dm3] 3R_19340540_SNP [dm6]	A	C	3.183e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	23867962	3R_23867962_SNP [dm3] 3R_28042240_SNP [dm6]	G	A	3.183e^-4	0.968	INTRON CG34362
2R	8987524	2R_8987524_SNP [dm3] 2R_13100019_SNP [dm6]	A	G	3.192e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	2379381	X_2379381_SNP [dm3] X_2485348_SNP [dm6]	A	C	3.200e^-4	0.968	INTRON trol
3R	19356813	3R_19356813_SNP [dm3] 3R_23531091_SNP [dm6]	A	T	3.201e^-4	0.968	UPSTREAM CG10175 INTERGENIC
X	4191002	X_4191002_SNP [dm3] X_4296969_SNP [dm6]	G	C	3.204e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3006543	3L_3006543_SNP [dm3] 3L_3006543_SNP [dm6]	C	A	3.205e^-4	0.968	INTRON FMRFaR
2L	10267319	2L_10267319_SNP [dm3] 2L_10267319_SNP [dm6]	T	G	3.210e^-4	0.968	DOWNSTREAM Mob3 INTRON CG4953
3L	18353309	3L_18353309_SNP [dm3] 3L_18360209_SNP [dm6]	T	G	3.215e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2R	17967512	2R_17967512_SNP [dm3] 2R_22080007_SNP [dm6]	T	A	3.223e^-4	0.968	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4587230	X_4587230_SNP [dm3] X_4693197_SNP [dm6]	A	T	3.226e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	4587238	X_4587238_DEL [dm3] X_4693205_DEL [dm6]	ATGATTAGCTTTA...	A	3.226e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	891244	3L_891244_SNP [dm3] 3L_891244_SNP [dm6]	G	C	3.242e^-4	0.968	UPSTREAM snoRNA:CG32479-a DOWNSTREAM snoRNA:CG32479-b INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16924698	3L_16924698_SNP [dm3] 3L_16931598_SNP [dm6]	A	C	3.249e^-4	0.968	SYNONYMOUS_CODING CG11905 INTRON CG11905	TF binding site mE1_TFBS_chinmo
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	3.270e^-4	0.968	INTRON twi & 1 other
2R	20356107	2R_20356107_SNP [dm3] 2R_24468584_SNP [dm6]	G	C	3.270e^-4	0.968	INTRON CG13579
2R	7200326	2R_7200326_SNP [dm3] 2R_11312821_SNP [dm6]	G	A	3.279e^-4	0.968	INTRON nompA	TF binding site mE1_TFBS_cad
2L	4891727	2L_4891727_SNP [dm3] 2L_4891727_SNP [dm6]	G	A	3.308e^-4	0.968	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16977044	3R_16977044_SNP [dm3] 3R_21151322_SNP [dm6]	T	C	3.309e^-4	0.968	INTRON SNF4Agamma
2R	1425325	2R_1425325_SNP [dm3] 2R_5537820_SNP [dm6]	T	A	3.309e^-4	0.968	INTRON CG30438	transposable element FlyBase
2L	6500877	2L_6500877_SNP [dm3] 2L_6500877_SNP [dm6]	G	T	3.310e^-4	0.968	INTRON CG31637
2L	18149841	2L_18149841_SNP [dm3] 2L_18149841_SNP [dm6]	G	A	3.311e^-4	0.968	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	6853904	2L_6853904_SNP [dm3] 2L_6853904_SNP [dm6]	T	A	3.314e^-4	0.968	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11337069	2R_11337069_SNP [dm3] 2R_15449564_SNP [dm6]	C	T	3.315e^-4	0.968	INTRON CG43729
2L	18159156	2L_18159156_INS [dm3] 2L_18159156_INS [dm6]	A	ACTTAAGTATTTTACTATTC...	3.323e^-4	0.968	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
2L	16571130	2L_16571130_SNP [dm3] 2L_16571130_SNP [dm6]	A	G	3.325e^-4	0.968	INTRON CG42389
2R	16555528	2R_16555528_SNP [dm3] 2R_20668023_SNP [dm6]	A	T	3.326e^-4	0.968	UTR_3_PRIME exu UPSTREAM Fem-1 DOWNSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	4168784	X_4168784_SNP [dm3] X_4274751_SNP [dm6]	C	T	3.333e^-4	0.968	DOWNSTREAM CR45483 INTERGENIC
2L	9561228	2L_9561228_DEL [dm3] 2L_9561228_DEL [dm6]	TT	T	3.341e^-4	0.968	UPSTREAM jp INTRON jp
X	21845350	X_21845350_SNP [dm3] X_22443514_SNP [dm6]	A	T	3.351e^-4	0.968	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	17076851	X_17076851_DEL [dm3] X_17182818_DEL [dm6]	TACTCAGATAAGT...	T	3.351e^-4	0.968	DOWNSTREAM CR44026 INTRON baz
2L	9564189	2L_9564189_SNP [dm3] 2L_9564189_SNP [dm6]	T	C	3.360e^-4	0.968	INTRON jp
2L	12369027	2L_12369027_SNP [dm3] 2L_12369027_SNP [dm6]	A	C	3.365e^-4	0.968	UPSTREAM bru-2 INTRON bru-2
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	3.369e^-4	0.968	INTRON CG5888
3L	4416371	3L_4416371_SNP [dm3] 3L_4416371_SNP [dm6]	G	A	3.373e^-4	0.968	INTRON DOR
2R	20356066	2R_20356066_SNP [dm3] 2R_24468543_SNP [dm6]	A	G	3.375e^-4	0.968	INTRON CG13579
X	2097613	X_2097613_SNP [dm3] X_2203580_SNP [dm6]	C	T	3.378e^-4	0.968	SYNONYMOUS_CODING CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3R	19231470	3R_19231470_SNP [dm3] 3R_23405748_SNP [dm6]	T	C	3.386e^-4	0.968	SYNONYMOUS_CODING Ir94e DOWNSTREAM Ir94d
2L	12167319	2L_12167319_SNP [dm3] 2L_12167319_SNP [dm6]	C	T	3.388e^-4	0.968	SPLICE_SITE_REGION CG31760 SYNONYMOUS_CODING CG31760 DOWNSTREAM ZnT33D
2L	17282274	2L_17282274_SNP [dm3] 2L_17282274_SNP [dm6]	G	C	3.396e^-4	0.968	INTERGENIC
3L	11663799	3L_11663799_DEL [dm3] 3L_11670699_DEL [dm6]	AA	A	3.410e^-4	0.968	INTRON CG32085
2R	8987454	2R_8987454_SNP [dm3] 2R_13099949_SNP [dm6]	A	C	3.413e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2767054	2L_2767054_SNP [dm3] 2L_2767054_SNP [dm6]	A	C	3.414e^-4	0.968	SYNONYMOUS_CODING aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2148476	3L_2148476_SNP [dm3] 3L_2148476_SNP [dm6]	C	G	3.416e^-4	0.968	INTRON zormin
2L	9563896	2L_9563896_SNP [dm3] 2L_9563896_SNP [dm6]	T	A	3.417e^-4	0.968	INTRON jp
3L	9525707	3L_9525707_SNP [dm3] 3L_9532607_SNP [dm6]	A	C	3.420e^-4	0.968	INTERGENIC
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	3.440e^-4	0.968	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	3.441e^-4	0.968	INTRON ppk9
3L	10362565	3L_10362565_SNP [dm3] 3L_10369465_SNP [dm6]	A	G	3.446e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
2R	7460073	2R_7460073_DEL [dm3] 2R_11572568_DEL [dm6]	AGAAAATCACAAATAATAAT...	A	3.448e^-4	0.968	INTERGENIC
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	3.450e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	22231406	X_22231406_SNP [dm3] X_22829570_SNP [dm6]	C	A	3.453e^-4	0.968	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	701734	3L_701734_SNP [dm3] 3L_701734_SNP [dm6]	A	G	3.465e^-4	0.968	INTERGENIC
X	4582275	X_4582275_SNP [dm3] X_4688242_SNP [dm6]	T	A	3.482e^-4	0.968	UTR_5_PRIME ctp INTRON ctp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24741850	3R_24741850_SNP [dm3] 3R_28916128_SNP [dm6]	G	T	3.483e^-4	0.968	INTRON Doa
3L	14495168	3L_14495168_SNP [dm3] 3L_14502068_SNP [dm6]	T	C	3.487e^-4	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_prd
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	3.502e^-4	0.968	INTRON twin
2R	16621779	2R_16621779_SNP [dm3] 2R_20734274_SNP [dm6]	C	T	3.502e^-4	0.968	INTRON dpr
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	3.503e^-4	0.968	INTERGENIC
3R	18858941	3R_18858941_DEL [dm3] 3R_23033219_DEL [dm6]	ATGGAACGCTTTTAA...	A	3.506e^-4	0.968	DOWNSTREAM CG13833 INTERGENIC
2R	1312975	2R_1312975_SNP [dm3] 2R_5425470_SNP [dm6]	A	C	3.510e^-4	0.968	INTRON laccase2	transposable element FlyBase
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	3.511e^-4	0.968	INTRON Spn31A
X	12665890	X_12665890_SNP [dm3] X_12771857_SNP [dm6]	C	G	3.511e^-4	0.968	UTR_3_PRIME CG3812 & 1 other DOWNSTREAM CG3812
3L	12615122	3L_12615122_SNP [dm3] 3L_12622022_SNP [dm6]	T	A	3.511e^-4	0.968	DOWNSTREAM caup INTERGENIC
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	3.516e^-4	0.968	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	10449548	2L_10449548_SNP [dm3] 2L_10449548_SNP [dm6]	T	C	3.518e^-4	0.968	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
2L	18293779	2L_18293779_DEL [dm3] 2L_18293779_DEL [dm6]	CTAC	C	3.521e^-4	0.968	DOWNSTREAM Sfp36F EXON CR43358
3R	12990834	3R_12990834_SNP [dm3] 3R_17165112_SNP [dm6]	T	A	3.530e^-4	0.968	INTRON Mur89F
X	3862729	X_3862729_SNP [dm3] X_3968696_SNP [dm6]	T	C	3.531e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	19567345	2R_19567345_DEL [dm3] 2R_23679822_DEL [dm6]	CC	C	3.534e^-4	0.968	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
3L	11348354	3L_11348354_SNP [dm3] 3L_11355254_SNP [dm6]	C	G	3.541e^-4	0.968	INTERGENIC
2L	9561445	2L_9561445_SNP [dm3] 2L_9561445_SNP [dm6]	A	T	3.542e^-4	0.968	INTRON jp
2R	14620466	2R_14620466_SNP [dm3] 2R_18732961_SNP [dm6]	C	T	3.547e^-4	0.968	INTRON Hs3st-A
X	2088714	X_2088714_DEL [dm3] X_2194681_DEL [dm6]	GGGAAAG	G	3.548e^-4	0.968	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12993357	3R_12993357_SNP [dm3] 3R_17167635_SNP [dm6]	G	C	3.550e^-4	0.968	INTRON Mur89F
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	3.555e^-4	0.968	INTRON nkd
2L	2822204	2L_2822204_SNP [dm3] 2L_2822204_SNP [dm6]	T	G	3.565e^-4	0.968	INTRON Duox
2L	10267309	2L_10267309_SNP [dm3] 2L_10267309_SNP [dm6]	C	T	3.569e^-4	0.968	DOWNSTREAM Mob3 INTRON CG4953
3L	5172756	3L_5172756_SNP [dm3] 3L_5179656_SNP [dm6]	G	A	3.577e^-4	0.968	INTRON shep
2L	11018907	2L_11018907_SNP [dm3] 2L_11018907_SNP [dm6]	A	T	3.586e^-4	0.968	DOWNSTREAM CG14913 INTRON Samuel
2L	10068211	2L_10068211_SNP [dm3] 2L_10068211_SNP [dm6]	A	C	3.594e^-4	0.968	INTRON CG44153
3L	18590294	3L_18590294_SNP [dm3] 3L_18597194_SNP [dm6]	C	T	3.598e^-4	0.968	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
2R	9198664	2R_9198664_SNP [dm3] 2R_13311159_SNP [dm6]	C	A	3.601e^-4	0.968	INTERGENIC
2L	5556045	2L_5556045_SNP [dm3] 2L_5556045_SNP [dm6]	G	T	3.610e^-4	0.968	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2R	20967396	2R_20967396_SNP [dm3] 2R_25079873_SNP [dm6]	C	T	3.611e^-4	0.968	INTRON gol	regulatory region REDfly_CRMs
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	3.623e^-4	0.968	INTRON Mp
2L	5978045	2L_5978045_SNP [dm3] 2L_5978045_SNP [dm6]	T	G	3.626e^-4	0.968	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3458707	X_3458707_SNP [dm3] X_3564674_SNP [dm6]	A	T	3.642e^-4	0.968	INTRON CG32791 & 1 other
2L	9565635	2L_9565635_SNP [dm3] 2L_9565635_SNP [dm6]	G	T	3.643e^-4	0.968	UPSTREAM jp INTRON jp
X	17939905	X_17939905_SNP [dm3] X_18045872_SNP [dm6]	A	G	3.647e^-4	0.968	SYNONYMOUS_CODING CG15373 INTRON Sh
2R	14675993	2R_14675993_SNP [dm3] 2R_18788488_SNP [dm6]	C	T	3.651e^-4	0.968	INTRON CG15080
3R	19625266	3R_19625266_SNP [dm3] 3R_23799544_SNP [dm6]	T	C	3.668e^-4	0.968	INTRON mbc
2L	18113306	2L_18113306_SNP [dm3] 2L_18113306_SNP [dm6]	A	C	3.670e^-4	0.968	UPSTREAM CG44476 INTERGENIC
3R	20948453	3R_20948453_SNP [dm3] 3R_25122731_SNP [dm6]	G	A	3.671e^-4	0.968	UTR_5_PRIME CG31108 & 1 other UPSTREAM vig2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA
X	16178011	X_16178011_SNP [dm3] X_16283978_SNP [dm6]	T	C	3.676e^-4	0.968	SYNONYMOUS_CODING eas UTR_3_PRIME eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	3.680e^-4	0.968	INTRON Pkc53E
3L	11412367	3L_11412367_SNP [dm3] 3L_11419267_SNP [dm6]	T	G	3.682e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11412379	3L_11412379_SNP [dm3] 3L_11419279_SNP [dm6]	G	A	3.682e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25087870	3R_25087870_SNP [dm3] 3R_29262148_SNP [dm6]	G	C	3.687e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7012001	2L_7012001_SNP [dm3] 2L_7012001_SNP [dm6]	T	A	3.688e^-4	0.968	UPSTREAM CG43321 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14156606	X_14156606_SNP [dm3] X_14262573_SNP [dm6]	T	C	3.694e^-4	0.968	INTRON CG1461
2L	6953244	2L_6953244_SNP [dm3] 2L_6953244_SNP [dm6]	T	C	3.695e^-4	0.968	SYNONYMOUS_CODING SA	TF binding site mE1_TFBS_sens
X	4584429	X_4584429_SNP [dm3] X_4690396_SNP [dm6]	T	G	3.700e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16921396	3L_16921396_SNP [dm3] 3L_16928296_SNP [dm6]	A	C	3.717e^-4	0.968	UPSTREAM CG13023 DOWNSTREAM CG11905 INTERGENIC
2R	15775929	2R_15775929_SNP [dm3] 2R_19888424_SNP [dm6]	C	T	3.717e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4040248	2L_4040248_SNP [dm3] 2L_4040248_SNP [dm6]	T	G	3.726e^-4	0.968	INTRON ed
2L	5428862	2L_5428862_SNP [dm3] 2L_5428862_SNP [dm6]	G	T	3.732e^-4	0.968	INTERGENIC
2R	7414162	2R_7414162_SNP [dm3] 2R_11526657_SNP [dm6]	A	G	3.735e^-4	0.968	SYNONYMOUS_CODING en	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13076952	3L_13076952_SNP [dm3] 3L_13083852_SNP [dm6]	C	A	3.741e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	25738543	3R_25738543_SNP [dm3] 3R_29912821_SNP [dm6]	C	T	3.743e^-4	0.968	UTR_3_PRIME CG31036 DOWNSTREAM Capa
2R	4945353	2R_4945353_SNP [dm3] 2R_9057848_SNP [dm6]	G	C	3.746e^-4	0.968	INTRON CG13743
X	21122548	X_21122548_SNP [dm3] X_21251521_SNP [dm6]	C	G	3.748e^-4	0.968	UPSTREAM CG1722 INTRON CG32521
2R	11335891	2R_11335891_DEL [dm3] 2R_15448386_DEL [dm6]	TGGCTAATGGTT...	T	3.748e^-4	0.968	INTRON CG43729
3R	24215969	3R_24215969_SNP [dm3] 3R_28390247_SNP [dm6]	G	T	3.775e^-4	0.968	INTERGENIC
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	3.781e^-4	0.968	UPSTREAM dnc INTRON dnc
X	4583641	X_4583641_DEL [dm3] X_4689608_DEL [dm6]	TT	T	3.783e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26103096	3R_26103096_SNP [dm3] 3R_30277374_SNP [dm6]	T	G	3.785e^-4	0.968	UPSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13954250	2L_13954250_SNP [dm3] 2L_13954250_SNP [dm6]	A	T	3.789e^-4	0.968	INTRON Ance-3	TF binding site mE1_TFBS_HSA
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	3.789e^-4	0.968	UPSTREAM para INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	3.790e^-4	0.968	SYNONYMOUS_CODING S-Lap2
X	19780164	X_19780164_SNP [dm3] X_19886131_SNP [dm6]	A	T	3.792e^-4	0.968	UTR_3_PRIME amn INTRON Hers	TF binding site mE1_TFBS_Trl
2L	9562460	2L_9562460_SNP [dm3] 2L_9562460_SNP [dm6]	T	A	3.793e^-4	0.968	INTRON jp
3L	11923037	3L_11923037_SNP [dm3] 3L_11929937_SNP [dm6]	G	A	3.803e^-4	0.968	INTRON CG44837 & 1 other	TF binding site mE1_TFBS_cad
2R	20320274	2R_20320274_SNP [dm3] 2R_24432751_SNP [dm6]	G	A	3.804e^-4	0.968	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20354982	2R_20354982_SNP [dm3] 2R_24467459_SNP [dm6]	C	T	3.808e^-4	0.968	INTRON CG13579
3R	16407332	3R_16407332_SNP [dm3] 3R_20581610_SNP [dm6]	C	T	3.812e^-4	0.968	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	9594679	2L_9594679_SNP [dm3] 2L_9594679_SNP [dm6]	C	T	3.820e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs
X	13173568	X_13173568_MNP [dm3] X_13279535_MNP [dm6]	CCT	TTG	3.828e^-4	0.968	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl
2R	19541122	2R_19541122_SNP [dm3] 2R_23653599_SNP [dm6]	A	C	3.831e^-4	0.968	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	22287072	X_22287072_SNP [dm3] X_22885236_SNP [dm6]	G	C	3.837e^-4	0.968	UTR_3_PRIME CG42346
2R	20320271	2R_20320271_SNP [dm3] 2R_24432748_SNP [dm6]	A	C	3.841e^-4	0.968	UPSTREAM Pgam5-2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	3.842e^-4	0.968	INTRON CG6154
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	3.876e^-4	0.968	UPSTREAM para INTERGENIC
3L	11927648	3L_11927648_SNP [dm3] 3L_11934548_SNP [dm6]	T	C	3.882e^-4	0.968	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9562102	2L_9562102_SNP [dm3] 2L_9562102_SNP [dm6]	C	G	3.884e^-4	0.968	INTRON jp
2R	11327929	2R_11327929_SNP [dm3] 2R_15440424_SNP [dm6]	G	T	3.887e^-4	0.968	INTRON CG43729
2L	6404915	2L_6404915_SNP [dm3] 2L_6404915_SNP [dm6]	G	C	3.891e^-4	0.968	INTRON CG42368
3L	3559739	3L_3559739_SNP [dm3] 3L_3559739_SNP [dm6]	A	G	3.895e^-4	0.968	INTRON Eip63E	TF binding site mE1_TFBS_bab1
2R	17912572	2R_17912572_INS [dm3] 2R_22025067_INS [dm6]	T	TGGGT	3.900e^-4	0.968	INTRON CG34370
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	3.911e^-4	0.968	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11202187	2R_11202187_SNP [dm3] 2R_15314682_SNP [dm6]	A	C	3.923e^-4	0.968	SYNONYMOUS_CODING mus210
2L	18139644	2L_18139644_SNP [dm3] 2L_18139644_SNP [dm6]	G	A	3.931e^-4	0.968	SYNONYMOUS_CODING Socs36E UTR_3_PRIME Socs36E	TF binding site mE1_TFBS_cad
2R	7410569	2R_7410569_SNP [dm3] 2R_11523064_SNP [dm6]	C	A	3.938e^-4	0.968	DOWNSTREAM en INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	8278092	2R_8278092_SNP [dm3] 2R_12390587_SNP [dm6]	T	C	3.940e^-4	0.968	DOWNSTREAM Cpr49Ad & 1 other INTERGENIC
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	3.945e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4584320	X_4584320_DEL [dm3] X_4690287_DEL [dm6]	TAAAG	A	3.948e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7751483	2R_7751483_SNP [dm3] 2R_11863978_SNP [dm6]	G	C	3.954e^-4	0.968	UPSTREAM CG42531 & 1 other INTERGENIC
X	9222216	X_9222216_SNP [dm3] X_9328183_SNP [dm6]	T	C	3.955e^-4	0.968	SYNONYMOUS_CODING CG34449 UTR_3_PRIME CG34449 DOWNSTREAM CG34450	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	6790331	X_6790331_SNP [dm3] X_6896298_SNP [dm6]	C	T	3.960e^-4	0.968	INTERGENIC
2L	3830340	2L_3830340_SNP [dm3] 2L_3830340_SNP [dm6]	G	C	3.962e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	3.962e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	10294253	2R_10294253_SNP [dm3] 2R_14406748_SNP [dm6]	T	G	3.972e^-4	0.968	INTERGENIC
2L	15321695	2L_15321695_SNP [dm3] 2L_15321695_SNP [dm6]	C	T	3.979e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16782948	2R_16782948_SNP [dm3] 2R_20895443_SNP [dm6]	T	C	3.996e^-4	0.968	INTRON otp
2R	16783273	2R_16783273_SNP [dm3] 2R_20895768_SNP [dm6]	G	A	3.996e^-4	0.968	SYNONYMOUS_CODING otp
3L	13870930	3L_13870930_SNP [dm3] 3L_13877830_SNP [dm6]	G	C	3.998e^-4	0.968	INTRON dysc
2R	10302024	2R_10302024_SNP [dm3] 2R_14414519_SNP [dm6]	C	G	4.003e^-4	0.968	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
3L	23280379	3L_23280379_SNP [dm3] 3L_23287279_SNP [dm6]	C	T	4.007e^-4	0.968	UTR_3_PRIME nAChRalpha4
3R	25738476	3R_25738476_SNP [dm3] 3R_29912754_SNP [dm6]	A	G	4.019e^-4	0.968	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
2R	11335783	2R_11335783_SNP [dm3] 2R_15448278_SNP [dm6]	G	A	4.020e^-4	0.968	INTRON CG43729
2L	14226156	2L_14226156_SNP [dm3] 2L_14226156_SNP [dm6]	A	T	4.024e^-4	0.968	INTRON Dyrk2	TF binding site BDTNP1_TFBS_da
3R	16407390	3R_16407390_SNP [dm3] 3R_20581668_SNP [dm6]	C	T	4.033e^-4	0.968	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
3R	26540351	3R_26540351_SNP [dm3] 3R_30714629_SNP [dm6]	T	A	4.034e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11055598	2R_11055598_SNP [dm3] 2R_15168093_SNP [dm6]	G	A	4.037e^-4	0.968	INTRON igl
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	4.040e^-4	0.968	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	4.041e^-4	0.968	INTRON Ncc69
2L	6148861	2L_6148861_SNP [dm3] 2L_6148861_SNP [dm6]	T	C	4.051e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2171225	2L_2171225_SNP [dm3] 2L_2171225_SNP [dm6]	T	A	4.052e^-4	0.968	INTRON aop	regulatory region REDfly_CRMs
X	8163430	X_8163430_SNP [dm3] X_8269397_SNP [dm6]	A	G	4.053e^-4	0.968	SYNONYMOUS_CODING CG1632 DOWNSTREAM Corp	TF binding site mE1_TFBS_chinmo
3L	21028618	3L_21028618_SNP [dm3] 3L_21035518_SNP [dm6]	T	C	4.053e^-4	0.968	INTRON siz	TF binding site BDTNP1_TFBS_dl
X	14236111	X_14236111_SNP [dm3] X_14342078_SNP [dm6]	A	G	4.054e^-4	0.968	INTRON dpr8
3L	13903325	3L_13903325_MNP [dm3] 3L_13910225_MNP [dm6]	AAT	GCA	4.056e^-4	0.968	INTRON Rgl	TF binding site mE1_TFBS_cad
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	4.058e^-4	0.968	INTRON CG13917
X	8647604	X_8647604_SNP [dm3] X_8753571_SNP [dm6]	T	A	4.069e^-4	0.968	INTERGENIC
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	4.074e^-4	0.968	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
2L	5973994	2L_5973994_SNP [dm3] 2L_5973994_SNP [dm6]	A	C	4.076e^-4	0.968	INTRON chic
2L	599421	2L_599421_SNP [dm3] 2L_599421_SNP [dm6]	T	C	4.078e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2L	13868123	2L_13868123_SNP [dm3] 2L_13868123_SNP [dm6]	T	A	4.084e^-4	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11927865	3L_11927865_SNP [dm3] 3L_11934765_SNP [dm6]	C	T	4.085e^-4	0.968	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
2L	8707098	2L_8707098_SNP [dm3] 2L_8707098_SNP [dm6]	C	T	4.098e^-4	0.968	SYNONYMOUS_CODING CG9314 INTRON Hnf4
X	7612623	X_7612623_SNP [dm3] X_7718590_SNP [dm6]	C	G	4.109e^-4	0.968	UPSTREAM CG15478 INTERGENIC
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	4.111e^-4	0.968	UTR_5_PRIME CG5160
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	4.113e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14495474	3L_14495474_SNP [dm3] 3L_14502374_SNP [dm6]	G	T	4.115e^-4	0.968	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2R	11333386	2R_11333386_SNP [dm3] 2R_15445881_SNP [dm6]	G	C	4.128e^-4	0.968	INTRON CG43729
2L	21649211	2L_21649211_INS [dm3] 2L_21649211_INS [dm6]	T	TCATT	4.144e^-4	0.968	INTERGENIC	transposable element FlyBase
X	21920508	X_21920508_INS [dm3] X_22518672_INS [dm6]	C	CC	4.146e^-4	0.968	INTRON CG17600
2L	6148729	2L_6148729_DEL [dm3] 2L_6148729_DEL [dm6]	AC	A	4.155e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15039037	2R_15039037_SNP [dm3] 2R_19151532_SNP [dm6]	T	C	4.155e^-4	0.968	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5137890	2L_5137890_SNP [dm3] 2L_5137890_SNP [dm6]	A	G	4.163e^-4	0.968	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	9556526	2L_9556526_SNP [dm3] 2L_9556526_SNP [dm6]	G	A	4.166e^-4	0.968	INTRON jp
3L	2255871	3L_2255871_SNP [dm3] 3L_2255871_SNP [dm6]	C	T	4.177e^-4	0.968	UTR_5_PRIME CG1275 INTRON CG1275	TF binding site mE1_TFBS_chinmo
4	160805	4_160805_DEL [dm3] 4_140179_DEL [dm6]	TTT	T	4.187e^-4	0.968	DOWNSTREAM CG32000 INTRON CG32000
X	1453233	X_1453233_SNP [dm3] X_1559200_SNP [dm6]	A	T	4.189e^-4	0.968	UPSTREAM snmRNA:400 INTRON Mur2B
3L	922601	3L_922601_SNP [dm3] 3L_922601_SNP [dm6]	C	T	4.199e^-4	0.968	INTRON Glut1
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	4.202e^-4	0.968	INTRON klg
2L	5556044	2L_5556044_SNP [dm3] 2L_5556044_SNP [dm6]	A	G	4.208e^-4	0.968	SPLICE_SITE_REGION GluRIIA DOWNSTREAM CG14017 INTRON GluRIIA
2L	6424633	2L_6424633_SNP [dm3] 2L_6424633_SNP [dm6]	T	C	4.213e^-4	0.968	SYNONYMOUS_CODING Fic	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	21684013	2L_21684013_SNP [dm3] 2L_21684013_SNP [dm6]	C	G	4.218e^-4	0.968	UPSTREAM CG31619 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	6536014	2R_6536014_SNP [dm3] 2R_10648509_SNP [dm6]	C	T	4.224e^-4	0.968	SYNONYMOUS_CODING Elp2 UPSTREAM CG12934
2R	10302666	2R_10302666_SNP [dm3] 2R_14415161_SNP [dm6]	G	A	4.229e^-4	0.968	INTERGENIC
3L	18197251	3L_18197251_SNP [dm3] 3L_18204151_SNP [dm6]	T	A	4.235e^-4	0.968	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
X	20265769	X_20265769_SNP [dm3] X_20394742_SNP [dm6]	G	T	4.236e^-4	0.968	UTR_5_PRIME HERC2 UPSTREAM Syx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	4.244e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26241261	3R_26241261_SNP [dm3] 3R_30415539_SNP [dm6]	C	T	4.245e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	4.256e^-4	0.968	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	4.256e^-4	0.968	INTRON CG15465 & 1 other
2L	13846614	2L_13846614_SNP [dm3] 2L_13846614_SNP [dm6]	T	G	4.258e^-4	0.968	UPSTREAM CG7916 INTRON CenG1A
2L	20680453	2L_20680453_SNP [dm3] 2L_20680453_SNP [dm6]	C	T	4.261e^-4	0.968	NON_SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6790274	X_6790274_SNP [dm3] X_6896241_SNP [dm6]	C	T	4.264e^-4	0.968	INTERGENIC
2L	5455460	2L_5455460_SNP [dm3] 2L_5455460_SNP [dm6]	C	T	4.268e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14260644	X_14260644_DEL [dm3] X_14366611_DEL [dm6]	CTGAGTTTT	C	4.283e^-4	0.968	INTRON dpr8
2L	5901886	2L_5901886_SNP [dm3] 2L_5901886_SNP [dm6]	T	A	4.288e^-4	0.968	INTERGENIC
2L	10851481	2L_10851481_SNP [dm3] 2L_10851481_SNP [dm6]	C	T	4.293e^-4	0.968	SYNONYMOUS_CODING CG43129 UTR_5_PRIME CG43129 UPSTREAM porin	TF binding site BDTNP1_TFBS_dl
X	7458118	X_7458118_SNP [dm3] X_7564085_SNP [dm6]	G	C	4.296e^-4	0.968	UPSTREAM CR44502 INTERGENIC
2R	20354983	2R_20354983_SNP [dm3] 2R_24467460_SNP [dm6]	C	T	4.299e^-4	0.968	INTRON CG13579
3R	6489509	3R_6489509_SNP [dm3] 3R_10663787_SNP [dm6]	T	C	4.305e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_sens
X	20867389	X_20867389_SNP [dm3] X_20996362_SNP [dm6]	G	A	4.308e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9223510	X_9223510_SNP [dm3] X_9329477_SNP [dm6]	G	A	4.308e^-4	0.968	SYNONYMOUS_CODING CG34450 INTRON CG34449
2R	18540129	2R_18540129_SNP [dm3] 2R_22652624_SNP [dm6]	C	A	4.318e^-4	0.968	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	6556027	2R_6556027_SNP [dm3] 2R_10668522_SNP [dm6]	T	C	4.322e^-4	0.968	INTERGENIC
3R	14903010	3R_14903010_SNP [dm3] 3R_19077288_SNP [dm6]	A	T	4.328e^-4	0.968	INTRON cdi
2L	21959468	2L_21959468_SNP [dm3] 2L_21959468_SNP [dm6]	A	G	4.333e^-4	0.968	DOWNSTREAM CR44804 & 1 other INTERGENIC
2L	16520519	2L_16520519_SNP [dm3] 2L_16520519_SNP [dm6]	T	C	4.339e^-4	0.968	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	18540103	2R_18540103_SNP [dm3] 2R_22652598_SNP [dm6]	A	T	4.340e^-4	0.968	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3L	19633165	3L_19633165_SNP [dm3] 3L_19640065_SNP [dm6]	T	G	4.343e^-4	0.968	SYNONYMOUS_CODING CG8786 DOWNSTREAM CG8786
3R	12993451	3R_12993451_SNP [dm3] 3R_17167729_SNP [dm6]	C	T	4.349e^-4	0.968	INTRON Mur89F
2R	8996870	2R_8996870_SNP [dm3] 2R_13109365_SNP [dm6]	C	A	4.357e^-4	0.968	INTERGENIC
X	16108230	X_16108230_SNP [dm3] X_16214197_SNP [dm6]	T	C	4.370e^-4	0.968	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7426865	2L_7426865_SNP [dm3] 2L_7426865_SNP [dm6]	A	G	4.385e^-4	0.968	UPSTREAM CG5261 DOWNSTREAM mir-275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	9570241	2L_9570241_SNP [dm3] 2L_9570241_SNP [dm6]	G	A	4.390e^-4	0.968	UPSTREAM CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	18197248	3L_18197248_SNP [dm3] 3L_18204148_SNP [dm6]	C	G	4.399e^-4	0.968	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17042402	2R_17042402_SNP [dm3] 2R_21154897_SNP [dm6]	T	C	4.407e^-4	0.968	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16691200	X_16691200_SNP [dm3] X_16797167_SNP [dm6]	C	T	4.418e^-4	0.968	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
2R	5395543	2R_5395543_SNP [dm3] 2R_9508038_SNP [dm6]	C	T	4.427e^-4	0.968	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
2L	22158338	2L_22158338_SNP [dm3] 2L_22158338_SNP [dm6]	T	C	4.434e^-4	0.968	INTRON CG42748
3R	21394032	3R_21394032_SNP [dm3] 3R_25568310_SNP [dm6]	T	C	4.441e^-4	0.968	INTRON msi
3L	10471210	3L_10471210_SNP [dm3] 3L_10478110_SNP [dm6]	G	C	4.456e^-4	0.968	INTERGENIC
2L	6026190	2L_6026190_SNP [dm3] 2L_6026190_SNP [dm6]	T	G	4.456e^-4	0.968	INTRON CG9109
3R	8427241	3R_8427241_SNP [dm3] 3R_12601519_SNP [dm6]	A	T	4.462e^-4	0.968	INTERGENIC
2L	4891709	2L_4891709_SNP [dm3] 2L_4891709_SNP [dm6]	G	A	4.463e^-4	0.968	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4267830	2L_4267830_SNP [dm3] 2L_4267830_SNP [dm6]	C	T	4.469e^-4	0.968	INTERGENIC
3R	16765447	3R_16765447_SNP [dm3] 3R_20939725_SNP [dm6]	A	C	4.471e^-4	0.968	INTRON CG31191
2R	10926354	2R_10926354_SNP [dm3] 2R_15038849_SNP [dm6]	T	A	4.480e^-4	0.968	INTRON hbs
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	4.487e^-4	0.968	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	12360800	X_12360800_INS [dm3] X_12466767_INS [dm6]	T	TT	4.488e^-4	0.968	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	4.492e^-4	0.968	INTRON CG13917
2L	9706636	2L_9706636_SNP [dm3] 2L_9706636_SNP [dm6]	A	G	4.493e^-4	0.968	SPLICE_SITE_REGION pelo UPSTREAM CG31710 INTRON pelo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9685859	3L_9685859_SNP [dm3] 3L_9692759_SNP [dm6]	T	C	4.497e^-4	0.968	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
2R	3009959	2R_3009959_SNP [dm3] 2R_7122454_SNP [dm6]	C	A	4.498e^-4	0.968	INTRON esn
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	4.509e^-4	0.968	INTERGENIC
3L	8112862	3L_8112862_SNP [dm3] 3L_8119762_SNP [dm6]	G	A	4.512e^-4	0.968	SYNONYMOUS_CODING msk
X	3338941	X_3338941_SNP [dm3] X_3444908_SNP [dm6]	A	C	4.516e^-4	0.968	INTRON CR44999 & 1 other
X	4582882	X_4582882_SNP [dm3] X_4688849_SNP [dm6]	C	G	4.518e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	9705679	2L_9705679_SNP [dm3] 2L_9705679_SNP [dm6]	G	A	4.521e^-4	0.968	INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10534968	3R_10534968_SNP [dm3] 3R_14709246_SNP [dm6]	C	A	4.522e^-4	0.968	INTRON kibra
3R	2516245	3R_2516245_SNP [dm3] 3R_6690523_SNP [dm6]	G	C	4.522e^-4	0.968	UPSTREAM Ccp84Af DOWNSTREAM Ccp84Ae INTERGENIC
X	4224549	X_4224549_SNP [dm3] X_4330516_SNP [dm6]	G	A	4.526e^-4	0.968	INTRON norpA
2L	5447943	2L_5447943_SNP [dm3] 2L_5447943_SNP [dm6]	T	A	4.526e^-4	0.968	INTERGENIC
3L	12849024	3L_12849024_SNP [dm3] 3L_12855924_SNP [dm6]	C	T	4.534e^-4	0.968	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11327910	2R_11327910_SNP [dm3] 2R_15440405_SNP [dm6]	T	C	4.544e^-4	0.968	INTRON CG43729
3L	4720661	3L_4720661_SNP [dm3] 3L_4720661_SNP [dm6]	A	C	4.565e^-4	0.968	INTRON RhoGEF64C	TF binding site mE1_TFBS_inv
X	3862711	X_3862711_SNP [dm3] X_3968678_SNP [dm6]	A	G	4.572e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	3784878	2L_3784878_INS [dm3] 2L_3784878_INS [dm6]	T	TT	4.574e^-4	0.968	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
3L	19632370	3L_19632370_SNP [dm3] 3L_19639270_SNP [dm6]	T	G	4.575e^-4	0.968	UTR_3_PRIME CG8786 DOWNSTREAM CG8786 INTRON CG8786
3R	6947386	3R_6947386_SNP [dm3] 3R_11121664_SNP [dm6]	G	A	4.580e^-4	0.968	INTERGENIC
X	4583645	X_4583645_SNP [dm3] X_4689612_SNP [dm6]	A	G	4.584e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	4.585e^-4	0.968	INTRON kel
X	21886733	X_21886733_SNP [dm3] X_22484897_SNP [dm6]	A	T	4.585e^-4	0.968	INTRON Cp110	transposable element FlyBase
2L	6853914	2L_6853914_SNP [dm3] 2L_6853914_SNP [dm6]	T	C	4.586e^-4	0.968	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	4.590e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25738308	3R_25738308_SNP [dm3] 3R_29912586_SNP [dm6]	T	C	4.591e^-4	0.968	SYNONYMOUS_CODING CG31036 DOWNSTREAM Capa
X	15178810	X_15178810_SNP [dm3] X_15284777_SNP [dm6]	G	T	4.594e^-4	0.968	INTERGENIC
3R	6430470	3R_6430470_SNP [dm3] 3R_10604748_SNP [dm6]	A	C	4.600e^-4	0.968	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13692860	2L_13692860_SNP [dm3] 2L_13692860_SNP [dm6]	T	C	4.604e^-4	0.968	INTRON CG31814
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	4.605e^-4	0.968	SYNONYMOUS_CODING CG9850
2L	6503233	2L_6503233_SNP [dm3] 2L_6503233_SNP [dm6]	A	T	4.606e^-4	0.968	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13948608	2L_13948608_SNP [dm3] 2L_13948608_SNP [dm6]	T	C	4.607e^-4	0.968	INTRON Ance-3
3R	26241284	3R_26241284_SNP [dm3] 3R_30415562_SNP [dm6]	G	A	4.610e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	18150399	2L_18150399_SNP [dm3] 2L_18150399_SNP [dm6]	T	G	4.658e^-4	0.968	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	7902125	2R_7902125_SNP [dm3] 2R_12014620_SNP [dm6]	G	T	4.672e^-4	0.968	UPSTREAM CR44306 INTRON otk
2L	6190421	2L_6190421_INS [dm3] 2L_6190421_INS [dm6]	G	GG	4.672e^-4	0.968	INTRON CG34380	TF binding site BDTNP1_TFBS_twi
2L	7848509	2L_7848509_SNP [dm3] 2L_7848509_SNP [dm6]	T	G	4.673e^-4	0.968	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
X	1454133	X_1454133_SNP [dm3] X_1560100_SNP [dm6]	C	A	4.690e^-4	0.968	INTRON Mur2B
3L	1583226	3L_1583226_SNP [dm3] 3L_1583226_SNP [dm6]	T	C	4.693e^-4	0.968	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19780270	X_19780270_SNP [dm3] X_19886237_SNP [dm6]	T	G	4.698e^-4	0.968	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4587157	X_4587157_SNP [dm3] X_4693124_SNP [dm6]	G	T	4.699e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	7595398	2L_7595398_SNP [dm3] 2L_7595398_SNP [dm6]	T	A	4.700e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6853913	2L_6853913_SNP [dm3] 2L_6853913_SNP [dm6]	A	T	4.704e^-4	0.968	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18173290	2L_18173290_SNP [dm3] 2L_18173290_SNP [dm6]	T	C	4.717e^-4	0.968	INTRON CG42750
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	4.717e^-4	0.968	INTERGENIC
X	22019690	X_22019690_INS [dm3] X_22617854_INS [dm6]	T	TAGA	4.719e^-4	0.968	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5518096	2L_5518096_SNP [dm3] 2L_5518096_SNP [dm6]	C	A	4.723e^-4	0.968	SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna
3R	14086585	3R_14086585_SNP [dm3] 3R_18260863_SNP [dm6]	T	C	4.723e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18197253	3L_18197253_SNP [dm3] 3L_18204153_SNP [dm6]	C	G	4.724e^-4	0.968	DOWNSTREAM CG7320 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6285680	2L_6285680_SNP [dm3] 2L_6285680_SNP [dm6]	G	T	4.725e^-4	0.968	INTRON Ddr
2R	18150878	2R_18150878_SNP [dm3] 2R_22263373_SNP [dm6]	G	A	4.727e^-4	0.968	SYNONYMOUS_CODING dve
2L	9562254	2L_9562254_SNP [dm3] 2L_9562254_SNP [dm6]	T	A	4.734e^-4	0.968	INTRON jp
2R	17042880	2R_17042880_SNP [dm3] 2R_21155375_SNP [dm6]	T	C	4.747e^-4	0.968	INTRON CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15556045	2R_15556045_SNP [dm3] 2R_19668540_SNP [dm6]	A	T	4.764e^-4	0.968	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	20315930	2R_20315930_SNP [dm3] 2R_24428407_SNP [dm6]	T	C	4.764e^-4	0.968	UPSTREAM prom INTERGENIC
3R	17004182	3R_17004182_SNP [dm3] 3R_21178460_SNP [dm6]	G	C	4.767e^-4	0.968	INTRON SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14503606	3L_14503606_DEL [dm3] 3L_14510506_DEL [dm6]	TACTAGGC	T	4.778e^-4	0.968	UPSTREAM bbg INTRON bbg
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	4.780e^-4	0.968	INTERGENIC
2L	1997060	2L_1997060_DEL [dm3] 2L_1997060_DEL [dm6]	CTTACAACCCAG...	C	4.781e^-4	0.968	DOWNSTREAM CG33543 INTERGENIC
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	4.782e^-4	0.968	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5976901	2L_5976901_SNP [dm3] 2L_5976901_SNP [dm6]	C	T	4.790e^-4	0.968	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6971023	3R_6971023_SNP [dm3] 3R_11145301_SNP [dm6]	A	G	4.799e^-4	0.968	UPSTREAM CheA86a INTERGENIC
X	1453997	X_1453997_SNP [dm3] X_1559964_SNP [dm6]	G	T	4.804e^-4	0.968	INTRON Mur2B
2L	10065464	2L_10065464_SNP [dm3] 2L_10065464_SNP [dm6]	C	T	4.807e^-4	0.968	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2L	10065473	2L_10065473_SNP [dm3] 2L_10065473_SNP [dm6]	T	C	4.807e^-4	0.968	INTRON CG44153	TF binding site mE1_TFBS_chinmo
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	4.809e^-4	0.968	INTRON Pkc53E
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	4.810e^-4	0.968	INTRON Sema-2b
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	4.816e^-4	0.968	UPSTREAM CG5758 INTERGENIC
2L	14085986	2L_14085986_SNP [dm3] 2L_14085986_SNP [dm6]	G	A	4.821e^-4	0.968	INTRON nAChRalpha5
2R	18463285	2R_18463285_SNP [dm3] 2R_22575780_SNP [dm6]	C	T	4.836e^-4	0.968	INTRON dnr1
2L	4291786	2L_4291786_SNP [dm3] 2L_4291786_SNP [dm6]	A	C	4.836e^-4	0.968	INTRON tutl
2L	4684942	2L_4684942_SNP [dm3] 2L_4684942_SNP [dm6]	A	T	4.844e^-4	0.968	SYNONYMOUS_CODING CG11929 UPSTREAM Bsg25A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1586236	3L_1586236_SNP [dm3] 3L_1586236_SNP [dm6]	A	T	4.844e^-4	0.968	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	6853910	2L_6853910_SNP [dm3] 2L_6853910_SNP [dm6]	T	A	4.848e^-4	0.968	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12723393	3R_12723393_SNP [dm3] 3R_16897671_SNP [dm6]	T	A	4.851e^-4	0.968	INTRON iab-8 EXON CR43617	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	4.852e^-4	0.968	INTRON CR44833 & 1 other
2R	15782709	2R_15782709_SNP [dm3] 2R_19895204_SNP [dm6]	C	A	4.853e^-4	0.968	INTERGENIC
2L	4660439	2L_4660439_SNP [dm3] 2L_4660439_SNP [dm6]	C	A	4.867e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20970443	2R_20970443_SNP [dm3] 2R_25082920_SNP [dm6]	G	A	4.868e^-4	0.968	INTRON gol	TF binding site mE1_TFBS_Kr
X	19853145	X_19853145_SNP [dm3] X_19959112_SNP [dm6]	A	T	4.878e^-4	0.968	UPSTREAM CG43784 INTRON CG12655
2L	6509035	2L_6509035_SNP [dm3] 2L_6509035_SNP [dm6]	G	A	4.885e^-4	0.968	UPSTREAM CR44775 INTRON CG31637	TF binding site BDTNP1_TFBS_hb
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	4.889e^-4	0.968	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9570373	2L_9570373_SNP [dm3] 2L_9570373_SNP [dm6]	A	G	4.892e^-4	0.968	UTR_5_PRIME CG3838 INTRON CG3838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26540332	3R_26540332_DEL [dm3] 3R_30714610_DEL [dm6]	TT	T	4.893e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20868412	3L_20868412_SNP [dm3] 3L_20875312_SNP [dm6]	C	T	4.902e^-4	0.968	INTRON CG32432
3L	20869853	3L_20869853_SNP [dm3] 3L_20876753_SNP [dm6]	A	G	4.902e^-4	0.968	INTRON CG32432
2L	12583547	2L_12583547_DEL [dm3] 2L_12583547_DEL [dm6]	TCATATATTATATATTATAT...	T	4.906e^-4	0.968	DOWNSTREAM CR44596 & 1 other INTERGENIC EXON CR44595
3R	14608265	3R_14608265_SNP [dm3] 3R_18782543_SNP [dm6]	T	G	4.924e^-4	0.968	INTRON CG7720
2L	11179435	2L_11179435_SNP [dm3] 2L_11179435_SNP [dm6]	T	C	4.931e^-4	0.968	SYNONYMOUS_CODING CG4788 INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11530618	2R_11530618_DEL [dm3] 2R_15643113_DEL [dm6]	AATA	A	4.940e^-4	0.968	INTRON CG42524
2L	9562010	2L_9562010_SNP [dm3] 2L_9562010_SNP [dm6]	A	C	4.940e^-4	0.968	INTRON jp
X	16710218	X_16710218_SNP [dm3] X_16816185_SNP [dm6]	C	G	4.950e^-4	0.968	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	6870684	3R_6870684_SNP [dm3] 3R_11044962_SNP [dm6]	G	A	4.950e^-4	0.968	INTRON CG34114
2R	16780036	2R_16780036_SNP [dm3] 2R_20892531_SNP [dm6]	T	G	4.955e^-4	0.968	INTRON otp
3L	7891199	3L_7891199_SNP [dm3] 3L_7898099_SNP [dm6]	A	G	4.956e^-4	0.968	SYNONYMOUS_CODING pbl
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	4.958e^-4	0.968	INTRON CG34114
2L	9469554	2L_9469554_DEL [dm3] 2L_9469554_DEL [dm6]	ACC	G	4.967e^-4	0.968	UPSTREAM CR43769 INTERGENIC
2R	6468279	2R_6468279_SNP [dm3] 2R_10580774_SNP [dm6]	A	T	4.989e^-4	0.968	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7426280	2L_7426280_SNP [dm3] 2L_7426280_SNP [dm6]	T	C	4.992e^-4	0.968	UPSTREAM CG5261 DOWNSTREAM mir-275 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	16758302	X_16758302_SNP [dm3] X_16864269_SNP [dm6]	C	G	4.993e^-4	0.968	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
2L	3883058	2L_3883058_DEL [dm3] 2L_3883058_DEL [dm6]	GAGAAC	A	4.999e^-4	0.968	INTRON capu	TF binding site mE1_TFBS_HSA
2R	11339848	2R_11339848_SNP [dm3] 2R_15452343_SNP [dm6]	C	A	5.004e^-4	0.968	INTRON CG43729
2R	11339849	2R_11339849_SNP [dm3] 2R_15452344_SNP [dm6]	G	C	5.004e^-4	0.968	INTRON CG43729
2L	18113662	2L_18113662_SNP [dm3] 2L_18113662_SNP [dm6]	A	T	5.015e^-4	0.968	UPSTREAM CG44476 & 1 other INTERGENIC	transposable element FlyBase
2R	12049488	2R_12049488_SNP [dm3] 2R_16161983_SNP [dm6]	A	C	5.019e^-4	0.968	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3009694	3L_3009694_SNP [dm3] 3L_3009694_SNP [dm6]	A	C	5.021e^-4	0.968	SYNONYMOUS_CODING FMRFaR
2L	5455489	2L_5455489_SNP [dm3] 2L_5455489_SNP [dm6]	C	A	5.025e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4177354	X_4177354_DEL [dm3] X_4283321_DEL [dm6]	GG	G	5.033e^-4	0.968	INTERGENIC
2L	13851792	2L_13851792_SNP [dm3] 2L_13851792_SNP [dm6]	C	G	5.034e^-4	0.968	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	5.036e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	5.052e^-4	0.968	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11927827	3L_11927827_SNP [dm3] 3L_11934727_SNP [dm6]	C	T	5.061e^-4	0.968	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_twi
X	1182405	X_1182405_SNP [dm3] X_1288372_SNP [dm6]	T	C	5.062e^-4	0.968	SYNONYMOUS_CODING CG32812	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	5.062e^-4	0.968	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	5.063e^-4	0.968	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	5.067e^-4	0.968	INTRON CG34377
2R	17153328	2R_17153328_SNP [dm3] 2R_21265823_SNP [dm6]	A	G	5.068e^-4	0.968	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
X	11527001	X_11527001_SNP [dm3] X_11632968_SNP [dm6]	C	A	5.076e^-4	0.968	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6192237	2L_6192237_SNP [dm3] 2L_6192237_SNP [dm6]	C	A	5.079e^-4	0.968	INTRON CG34380
2R	7410502	2R_7410502_SNP [dm3] 2R_11522997_SNP [dm6]	A	G	5.083e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	9190781	3L_9190781_SNP [dm3] 3L_9197681_SNP [dm6]	C	A	5.084e^-4	0.968	INTERGENIC
3L	7877186	3L_7877186_SNP [dm3] 3L_7884086_SNP [dm6]	T	C	5.089e^-4	0.968	INTRON CG32365
3L	888379	3L_888379_SNP [dm3] 3L_888379_SNP [dm6]	T	G	5.097e^-4	0.968	NON_SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	4793774	3R_4793774_SNP [dm3] 3R_8968052_SNP [dm6]	C	T	5.100e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_cad
2R	6434437	2R_6434437_DEL [dm3] 2R_10546932_DEL [dm6]	TGT	G	5.100e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18925254	2R_18925254_SNP [dm3] 2R_23037731_SNP [dm6]	C	A	5.103e^-4	0.968	INTRON twi & 1 other
3R	22806269	3R_22806269_SNP [dm3] 3R_26980547_SNP [dm6]	A	G	5.108e^-4	0.968	UTR_5_PRIME CG14253 INTRON CG14253	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4089029	3L_4089029_SNP [dm3] 3L_4089029_SNP [dm6]	A	T	5.109e^-4	0.968	SYNONYMOUS_CODING CG14989 UPSTREAM CG14989 & 1 other
2R	10723638	2R_10723638_SNP [dm3] 2R_14836133_SNP [dm6]	G	A	5.115e^-4	0.968	INTERGENIC
2R	2921034	2R_2921034_SNP [dm3] 2R_7033529_SNP [dm6]	G	A	5.122e^-4	0.968	UPSTREAM Tsp42Eh DOWNSTREAM Tsp42Eg INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21915159	2L_21915159_SNP [dm3] 2L_21915159_SNP [dm6]	T	A	5.123e^-4	0.968	NON_SYNONYMOUS_CODING CG31600
2R	16782558	2R_16782558_SNP [dm3] 2R_20895053_SNP [dm6]	G	A	5.126e^-4	0.968	INTRON otp	TF binding site BDTNP1_TFBS_da
X	10241496	X_10241496_SNP [dm3] X_10347463_SNP [dm6]	G	A	5.134e^-4	0.968	NON_SYNONYMOUS_CODING CG43740 UTR_3_PRIME CG43740 UPSTREAM snoRNA:U3:9B
2R	11981573	2R_11981573_SNP [dm3] 2R_16094068_SNP [dm6]	A	C	5.138e^-4	0.968	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17961891	2R_17961891_SNP [dm3] 2R_22074386_SNP [dm6]	A	C	5.138e^-4	0.968	NON_SYNONYMOUS_CODING CG2921 UPSTREAM CG11474	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18768582	2R_18768582_SNP [dm3] 2R_22881059_SNP [dm6]	T	A	5.142e^-4	0.968	UTR_3_PRIME PIP5K59B DOWNSTREAM CG3501
2L	5897520	2L_5897520_SNP [dm3] 2L_5897520_SNP [dm6]	C	A	5.143e^-4	0.968	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13692743	2L_13692743_SNP [dm3] 2L_13692743_SNP [dm6]	T	C	5.143e^-4	0.968	INTRON CG31814
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	5.151e^-4	0.968	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	5.155e^-4	0.968	INTRON CG34377
3R	22235658	3R_22235658_SNP [dm3] 3R_26409936_SNP [dm6]	G	A	5.160e^-4	0.968	INTERGENIC
3R	22235671	3R_22235671_SNP [dm3] 3R_26409949_SNP [dm6]	G	A	5.160e^-4	0.968	INTERGENIC
3R	16134519	3R_16134519_SNP [dm3] 3R_20308797_SNP [dm6]	C	T	5.160e^-4	0.968	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6866863	2L_6866863_SNP [dm3] 2L_6866863_SNP [dm6]	C	G	5.171e^-4	0.968	INTRON Nha1
3R	17154780	3R_17154780_SNP [dm3] 3R_21329058_SNP [dm6]	G	C	5.182e^-4	0.968	INTRON CG16791	TF binding site BDTNP1_TFBS_dl
3R	1420779	3R_1420779_DEL [dm3] 3R_5595057_DEL [dm6]	TAAGT	T	5.183e^-4	0.968	UTR_3_PRIME Vha26 DOWNSTREAM kra & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21099496	3R_21099496_SNP [dm3] 3R_25273774_SNP [dm6]	A	C	5.183e^-4	0.968	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3R	22541817	3R_22541817_DEL [dm3] 3R_26716095_DEL [dm6]	TGAC	T	5.191e^-4	0.968	INTRON CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7102590	X_7102590_SNP [dm3] X_7208557_SNP [dm6]	A	G	5.194e^-4	0.968	INTRON CR44357 & 1 other	TF binding site mE1_TFBS_chinmo
3L	14009340	3L_14009340_SNP [dm3] 3L_14016240_SNP [dm6]	G	A	5.199e^-4	0.968	SYNONYMOUS_CODING upSET	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14335728	3L_14335728_SNP [dm3] 3L_14342628_SNP [dm6]	C	G	5.201e^-4	0.968	INTRON fz
X	4128751	X_4128751_SNP [dm3] X_4234718_SNP [dm6]	C	A	5.203e^-4	0.968	INTERGENIC
3R	25240868	3R_25240868_INS [dm3] 3R_29415146_INS [dm6]	G	GG	5.209e^-4	0.968	INTRON Ptp99A
3L	2868383	3L_2868383_SNP [dm3] 3L_2868383_SNP [dm6]	A	C	5.210e^-4	0.968	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	3646379	3L_3646379_INS [dm3] 3L_3646379_INS [dm6]	A	AGCA	5.217e^-4	0.968		TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27131359	3R_27131359_SNP [dm3] 3R_31305637_SNP [dm6]	A	G	5.218e^-4	0.968	UPSTREAM CG11340 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	5.219e^-4	0.968	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2R	11437670	2R_11437670_SNP [dm3] 2R_15550165_SNP [dm6]	C	T	5.219e^-4	0.968	UPSTREAM CG8192 INTERGENIC	TF binding site mE1_TFBS_Trl
X	12069886	X_12069886_SNP [dm3] X_12175853_SNP [dm6]	G	A	5.224e^-4	0.968	DOWNSTREAM CG1924 INTRON Ten-a
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	5.225e^-4	0.968	INTRON trol
2R	16516586	2R_16516586_SNP [dm3] 2R_20629081_SNP [dm6]	A	G	5.227e^-4	0.968	SYNONYMOUS_CODING Rcd6 DOWNSTREAM CG16742	TF binding site mE1_TFBS_chinmo
2R	18001195	2R_18001195_SNP [dm3] 2R_22113690_SNP [dm6]	G	T	5.237e^-4	0.968	UPSTREAM Vrp1 INTRON Vrp1 & 1 other
2L	7447268	2L_7447268_SNP [dm3] 2L_7447268_SNP [dm6]	C	T	5.240e^-4	0.968	NON_SYNONYMOUS_CODING santa-maria
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	5.244e^-4	0.968	INTRON CG3009
3L	14333956	3L_14333956_SNP [dm3] 3L_14340856_SNP [dm6]	A	G	5.245e^-4	0.968	INTRON fz	TF binding site BDTNP1_TFBS_dl
2R	10943216	2R_10943216_SNP [dm3] 2R_15055711_SNP [dm6]	G	T	5.245e^-4	0.968	INTRON CG33467
2L	7405703	2L_7405703_SNP [dm3] 2L_7405703_SNP [dm6]	A	G	5.246e^-4	0.968	SYNONYMOUS_CODING CG5177
2R	3288046	2R_3288046_SNP [dm3] 2R_7400541_SNP [dm6]	C	T	5.252e^-4	0.968	UPSTREAM CG11112 INTRON Eaf
2L	5959378	2L_5959378_SNP [dm3] 2L_5959378_SNP [dm6]	A	T	5.252e^-4	0.968	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	5959379	2L_5959379_INS [dm3] 2L_5959379_INS [dm6]	C	CAAAAAGTTGTTG...	5.252e^-4	0.968	UPSTREAM Vm26Ac DOWNSTREAM Vm26Aa INTERGENIC
2L	9007919	2L_9007919_INS [dm3] 2L_9007919_INS [dm6]	G	GCACTTGCACACC...	5.252e^-4	0.968	INTERGENIC
3R	21290468	3R_21290468_SNP [dm3] 3R_25464746_SNP [dm6]	A	C	5.255e^-4	0.968	INTRON Fur1
2L	2670725	2L_2670725_SNP [dm3] 2L_2670725_SNP [dm6]	T	A	5.262e^-4	0.968	UPSTREAM Gr23a INTRON Gr23a	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	4692879	2L_4692879_SNP [dm3] 2L_4692879_SNP [dm6]	T	A	5.262e^-4	0.968	INTERGENIC
2R	17140588	2R_17140588_SNP [dm3] 2R_21253083_SNP [dm6]	T	G	5.268e^-4	0.968	INTERGENIC
2R	18032528	2R_18032528_INS [dm3] 2R_22145023_INS [dm6]	G	GG	5.276e^-4	0.968	INTRON a
2L	5518131	2L_5518131_SNP [dm3] 2L_5518131_SNP [dm6]	A	C	5.278e^-4	0.968	NON_SYNONYMOUS_CODING CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_sna
3R	18387636	3R_18387636_SNP [dm3] 3R_22561914_SNP [dm6]	T	A	5.283e^-4	0.968	INTRON CG5278
X	2331288	X_2331288_SNP [dm3] X_2437255_SNP [dm6]	C	T	5.284e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	1453982	X_1453982_DEL [dm3] X_1559949_DEL [dm6]	TTT	T	5.284e^-4	0.968	INTRON Mur2B
X	1453996	X_1453996_SNP [dm3] X_1559963_SNP [dm6]	T	A	5.284e^-4	0.968	INTRON Mur2B
X	1454038	X_1454038_SNP [dm3] X_1560005_SNP [dm6]	G	T	5.284e^-4	0.968	INTRON Mur2B
2L	13692634	2L_13692634_SNP [dm3] 2L_13692634_SNP [dm6]	A	T	5.289e^-4	0.968	INTRON CG31814
3L	18353698	3L_18353698_SNP [dm3] 3L_18360598_SNP [dm6]	G	C	5.302e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23032748	3R_23032748_SNP [dm3] 3R_27207026_SNP [dm6]	A	G	5.304e^-4	0.968	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27667718	3R_27667718_SNP [dm3] 3R_31841996_SNP [dm6]	T	A	5.304e^-4	0.968	UTR_3_PRIME RhoGAP100F
X	19975403	X_19975403_SNP [dm3] X_20081370_SNP [dm6]	G	T	5.305e^-4	0.968	INTERGENIC
2R	20970606	2R_20970606_SNP [dm3] 2R_25083083_SNP [dm6]	A	C	5.305e^-4	0.968	INTRON gol
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	5.323e^-4	0.968	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	6706251	2L_6706251_SNP [dm3] 2L_6706251_SNP [dm6]	C	T	5.323e^-4	0.968	INTRON Tsp
3R	21802552	3R_21802552_SNP [dm3] 3R_25976830_SNP [dm6]	C	G	5.325e^-4	0.968	INTRON CG42261
2L	9564356	2L_9564356_SNP [dm3] 2L_9564356_SNP [dm6]	G	T	5.331e^-4	0.968	INTRON jp
X	3522536	X_3522536_SNP [dm3] X_3628503_SNP [dm6]	C	A	5.331e^-4	0.968	INTRON AstA-R1
2R	18017568	2R_18017568_SNP [dm3] 2R_22130063_SNP [dm6]	A	G	5.355e^-4	0.968	NON_SYNONYMOUS_CODING NtR DOWNSTREAM CG34205	TF binding site BDTNP1_TFBS_twi
X	17911850	X_17911850_SNP [dm3] X_18017817_SNP [dm6]	A	G	5.355e^-4	0.968	INTRON Sh
2L	4203691	2L_4203691_SNP [dm3] 2L_4203691_SNP [dm6]	T	G	5.356e^-4	0.968	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_sens
2R	6180650	2R_6180650_INS [dm3] 2R_10293145_INS [dm6]	C	TG	5.364e^-4	0.968	INTRON CAP
X	7912430	X_7912430_SNP [dm3] X_8018397_SNP [dm6]	G	A	5.384e^-4	0.968	INTRON Tbh
3R	25986697	3R_25986697_SNP [dm3] 3R_30160975_SNP [dm6]	A	G	5.385e^-4	0.968	UPSTREAM CG11498 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	2346945	X_2346945_SNP [dm3] X_2452912_SNP [dm6]	T	G	5.386e^-4	0.968	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4591249	X_4591249_SNP [dm3] X_4697216_SNP [dm6]	T	G	5.387e^-4	0.968	INTRON ctp
2R	7400633	2R_7400633_SNP [dm3] 2R_11513128_SNP [dm6]	G	A	5.390e^-4	0.968	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16782351	2R_16782351_INS [dm3] 2R_20894846_INS [dm6]	T	TGT	5.393e^-4	0.968	INTRON otp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Trl
3R	13387842	3R_13387842_SNP [dm3] 3R_17562120_SNP [dm6]	T	C	5.394e^-4	0.968	INTRON Hmx	TF binding site mE1_TFBS_sens
3L	10571850	3L_10571850_SNP [dm3] 3L_10578750_SNP [dm6]	G	T	5.401e^-4	0.968	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7786950	2R_7786950_SNP [dm3] 2R_11899445_SNP [dm6]	G	T	5.404e^-4	0.968	UPSTREAM Zip48C INTRON MCPH1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23882029	3R_23882029_DEL [dm3] 3R_28056307_DEL [dm6]	TA	T	5.406e^-4	0.968	INTRON CG34362
2L	16569902	2L_16569902_SNP [dm3] 2L_16569902_SNP [dm6]	A	T	5.412e^-4	0.968	INTRON CG42389
2L	7143208	2L_7143208_SNP [dm3] 2L_7143208_SNP [dm6]	T	A	5.414e^-4	0.968	INTRON Pvf3 EXON CR44612	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5517607	2L_5517607_SNP [dm3] 2L_5517607_SNP [dm6]	T	G	5.414e^-4	0.968	UPSTREAM CG14020 INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	19780246	X_19780246_INS [dm3] X_19886213_INS [dm6]	G	GG	5.425e^-4	0.968	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	5.433e^-4	0.968	INTRON CG13917
2R	10943206	2R_10943206_SNP [dm3] 2R_15055701_SNP [dm6]	G	A	5.439e^-4	0.968	INTRON CG33467
X	9223038	X_9223038_SNP [dm3] X_9329005_SNP [dm6]	A	T	5.441e^-4	0.968	DOWNSTREAM CG34450 INTRON CG34449
2L	1718112	2L_1718112_SNP [dm3] 2L_1718112_SNP [dm6]	A	G	5.445e^-4	0.968	SYNONYMOUS_CODING Rim2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14780487	2L_14780487_SNP [dm3] 2L_14780487_SNP [dm6]	T	G	5.446e^-4	0.968	INTERGENIC
X	3862697	X_3862697_SNP [dm3] X_3968664_SNP [dm6]	C	A	5.448e^-4	0.968	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	8563566	3L_8563566_SNP [dm3] 3L_8570466_SNP [dm6]	C	T	5.448e^-4	0.968	UTR_3_PRIME rhea DOWNSTREAM CR43910 INTRON rhea
2L	18293821	2L_18293821_SNP [dm3] 2L_18293821_SNP [dm6]	G	A	5.466e^-4	0.968	DOWNSTREAM Sfp36F EXON CR43358
2L	6505574	2L_6505574_SNP [dm3] 2L_6505574_SNP [dm6]	A	G	5.471e^-4	0.968	INTRON CG31637

By genomic position
Variant impact
Gene name

Femur_Length_T2 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results