DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.288e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.02297

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.8176	0.0545
In_3R_Mo	5.2853	0.0712

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1780 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	1.667e^-6	0.638	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	2566359	X_2566359_SNP [dm3] X_2672326_SNP [dm6]	C	T	3.233e^-6	0.638	INTRON sgg
3L	5186058	3L_5186058_SNP [dm3] 3L_5192958_SNP [dm6]	A	G	3.440e^-6	0.638	INTRON shep
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	3.447e^-6	0.638	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	3.623e^-6	0.638	INTERGENIC
3R	22515522	3R_22515522_SNP [dm3] 3R_26689800_SNP [dm6]	A	T	3.746e^-6	0.638	INTERGENIC
X	20005864	X_20005864_INS [dm3] X_20111831_INS [dm6]	C	CCACACTT	4.013e^-6	0.638	INTERGENIC
X	20005872	X_20005872_SNP [dm3] X_20111839_SNP [dm6]	C	A	4.019e^-6	0.638	INTERGENIC
2L	16214483	2L_16214483_SNP [dm3] 2L_16214483_SNP [dm6]	T	C	4.529e^-6	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	4.531e^-6	0.638	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13140384	2L_13140384_SNP [dm3] 2L_13140384_SNP [dm6]	T	C	4.896e^-6	0.638	INTERGENIC	transposable element FlyBase
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	4.926e^-6	0.638	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20006044	X_20006044_SNP [dm3] X_20112011_SNP [dm6]	A	C	5.019e^-6	0.638	INTERGENIC
2L	16214551	2L_16214551_SNP [dm3] 2L_16214551_SNP [dm6]	T	A	5.090e^-6	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9414903	X_9414903_SNP [dm3] X_9520870_SNP [dm6]	A	T	5.109e^-6	0.638	INTRON CG32700
3R	23976256	3R_23976256_INS [dm3] 3R_28150534_INS [dm6]	A	ACTTAAGTCCCGC...	8.321e^-6	0.974	INTRON CG34354
3L	14141383	3L_14141383_SNP [dm3] 3L_14148283_SNP [dm6]	A	C	1.033e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1589050	3L_1589050_SNP [dm3] 3L_1589050_SNP [dm6]	C	A	1.345e^-5	1	INTRON CG13917
2L	1094324	2L_1094324_SNP [dm3] 2L_1094324_SNP [dm6]	A	G	1.356e^-5	1	INTRON CG4629
3R	22515651	3R_22515651_SNP [dm3] 3R_26689929_SNP [dm6]	G	C	1.380e^-5	1	INTERGENIC
3L	11699174	3L_11699174_SNP [dm3] 3L_11706074_SNP [dm6]	C	T	1.401e^-5	1	INTRON CG11658
2L	8226548	2L_8226548_SNP [dm3] 2L_8226548_SNP [dm6]	G	A	1.431e^-5	1	SYNONYMOUS_CODING Pvr
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	1.440e^-5	1	INTRON RunxB
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	1.538e^-5	1	UPSTREAM CG11112 INTRON Eaf
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	1.573e^-5	1	INTRON dpr3
2R	16329167	2R_16329167_SNP [dm3] 2R_20441662_SNP [dm6]	G	C	1.588e^-5	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	3128297	2L_3128297_SNP [dm3] 2L_3128297_SNP [dm6]	A	T	1.686e^-5	1	UPSTREAM CG15403 INTRON toc
2R	18777705	2R_18777705_SNP [dm3] 2R_22890182_SNP [dm6]	T	C	1.696e^-5	1	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	18252585	3L_18252585_SNP [dm3] 3L_18259485_SNP [dm6]	G	T	1.791e^-5	1	INTERGENIC
X	15480600	X_15480600_SNP [dm3] X_15586567_SNP [dm6]	C	T	1.956e^-5	1	SYNONYMOUS_CODING CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	1.981e^-5	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
2L	16214728	2L_16214728_SNP [dm3] 2L_16214728_SNP [dm6]	C	A	2.011e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14969788	3R_14969788_DEL [dm3] 3R_19144066_DEL [dm6]	GAACG	G	2.040e^-5	1	INTRON Ppcs
3R	15166554	3R_15166554_SNP [dm3] 3R_19340832_SNP [dm6]	G	A	2.473e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	16214563	2L_16214563_SNP [dm3] 2L_16214563_SNP [dm6]	A	T	2.527e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20005882	X_20005882_SNP [dm3] X_20111849_SNP [dm6]	T	A	2.545e^-5	1	INTERGENIC
3R	22515669	3R_22515669_SNP [dm3] 3R_26689947_SNP [dm6]	G	C	2.573e^-5	1	INTERGENIC
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	2.587e^-5	1	SYNONYMOUS_CODING S-Lap2
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	2.592e^-5	1	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	2.608e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22515240	3R_22515240_SNP [dm3] 3R_26689518_SNP [dm6]	T	G	2.649e^-5	1	INTERGENIC
2L	1954687	2L_1954687_SNP [dm3] 2L_1954687_SNP [dm6]	G	A	2.705e^-5	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20005863	X_20005863_SNP [dm3] X_20111830_SNP [dm6]	A	T	2.713e^-5	1	INTERGENIC
3R	14969796	3R_14969796_SNP [dm3] 3R_19144074_SNP [dm6]	G	C	2.718e^-5	1	INTRON Ppcs
3R	14969810	3R_14969810_SNP [dm3] 3R_19144088_SNP [dm6]	G	C	2.718e^-5	1	INTRON Ppcs
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	2.769e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2L	21763436	2L_21763436_SNP [dm3] 2L_21763436_SNP [dm6]	A	T	2.854e^-5	1	INTRON CG31612
3R	22530137	3R_22530137_SNP [dm3] 3R_26704415_SNP [dm6]	A	G	2.855e^-5	1	INTRON amon
2L	21763435	2L_21763435_SNP [dm3] 2L_21763435_SNP [dm6]	A	T	2.878e^-5	1	INTRON CG31612
3L	6941033	3L_6941033_SNP [dm3] 3L_6947933_SNP [dm6]	T	G	2.968e^-5	1	INTRON tow
3L	12508494	3L_12508494_SNP [dm3] 3L_12515394_SNP [dm6]	T	A	2.988e^-5	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	14086396	3R_14086396_SNP [dm3] 3R_18260674_SNP [dm6]	A	C	3.145e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10693164	X_10693164_SNP [dm3] X_10799131_SNP [dm6]	A	G	3.316e^-5	1	INTRON Imp
3R	15166169	3R_15166169_SNP [dm3] 3R_19340447_SNP [dm6]	G	T	3.332e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	3.516e^-5	1	INTRON RunxB
3R	14448514	3R_14448514_SNP [dm3] 3R_18622792_SNP [dm6]	A	T	3.558e^-5	1	INTRON qin	TF binding site mE1_TFBS_inv
2R	8922291	2R_8922291_SNP [dm3] 2R_13034786_SNP [dm6]	G	A	3.611e^-5	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8921245	2R_8921245_SNP [dm3] 2R_13033740_SNP [dm6]	T	C	3.642e^-5	1	INTERGENIC
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	3.679e^-5	1	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	3.693e^-5	1	INTRON CG13917
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	3.888e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22530140	3R_22530140_INS [dm3] 3R_26704418_INS [dm6]	A	AA	3.948e^-5	1	INTRON amon
3L	8147928	3L_8147928_SNP [dm3] 3L_8154828_SNP [dm6]	T	C	4.034e^-5	1	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19650139	3R_19650139_SNP [dm3] 3R_23824417_SNP [dm6]	T	C	4.181e^-5	1	DOWNSTREAM CR43285 INTRON CG34355
3L	15234018	3L_15234018_SNP [dm3] 3L_15240918_SNP [dm6]	T	C	4.235e^-5	1	UTR_3_PRIME Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22530093	3R_22530093_SNP [dm3] 3R_26704371_SNP [dm6]	T	G	4.303e^-5	1	INTRON amon
X	2566309	X_2566309_DEL [dm3] X_2672276_DEL [dm6]	ATCATGACTAC...	G	4.362e^-5	1	INTRON sgg
3R	22530086	3R_22530086_SNP [dm3] 3R_26704364_SNP [dm6]	T	C	4.790e^-5	1	INTRON amon
3L	7641337	3L_7641337_SNP [dm3] 3L_7648237_SNP [dm6]	T	A	4.804e^-5	1	INTERGENIC
3R	19232134	3R_19232134_SNP [dm3] 3R_23406412_SNP [dm6]	T	A	4.852e^-5	1	SYNONYMOUS_CODING Ir94e	TF binding site mE1_TFBS_sens
2L	19915893	2L_19915893_INS [dm3] 2L_19915893_INS [dm6]	T	TCTTAACATTTTTGCATTT...	4.899e^-5	1	INTRON sick	TF binding site mE1_TFBS_bab1
3L	7468654	3L_7468654_SNP [dm3] 3L_7475554_SNP [dm6]	G	T	4.993e^-5	1	UPSTREAM CG43292 INTERGENIC
2L	10066335	2L_10066335_SNP [dm3] 2L_10066335_SNP [dm6]	A	G	5.009e^-5	1	SYNONYMOUS_CODING CG44153	TF binding site mE1_TFBS_chinmo
X	9414934	X_9414934_SNP [dm3] X_9520901_SNP [dm6]	C	T	5.087e^-5	1	INTRON CG32700
2L	12905651	2L_12905651_SNP [dm3] 2L_12905651_SNP [dm6]	C	G	5.090e^-5	1	INTERGENIC
2L	19009551	2L_19009551_SNP [dm3] 2L_19009551_SNP [dm6]	C	T	5.114e^-5	1	UPSTREAM snoRNA:Me28S-A2113 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	7725278	3L_7725278_SNP [dm3] 3L_7732178_SNP [dm6]	C	T	5.127e^-5	1	UTR_5_PRIME CG8492 INTRON CG32373
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	5.167e^-5	1	INTRON CG5888
X	20005862	X_20005862_SNP [dm3] X_20111829_SNP [dm6]	A	G	5.168e^-5	1	INTERGENIC
3L	15698985	3L_15698985_SNP [dm3] 3L_15705885_SNP [dm6]	G	T	5.284e^-5	1	INTERGENIC	TF binding site mE1_TFBS_sens
2R	8921288	2R_8921288_SNP [dm3] 2R_13033783_SNP [dm6]	A	G	5.375e^-5	1	INTERGENIC
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	5.386e^-5	1	UPSTREAM para INTERGENIC
2R	7638329	2R_7638329_SNP [dm3] 2R_11750824_SNP [dm6]	G	C	5.394e^-5	1	INTERGENIC
3R	19974098	3R_19974098_SNP [dm3] 3R_24148376_SNP [dm6]	T	G	5.399e^-5	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
3L	4306709	3L_4306709_SNP [dm3] 3L_4306709_SNP [dm6]	A	T	5.439e^-5	1	INTRON dyl
3R	19973970	3R_19973970_SNP [dm3] 3R_24148248_SNP [dm6]	G	A	5.503e^-5	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	17457918	2L_17457918_SNP [dm3] 2L_17457918_SNP [dm6]	T	A	5.617e^-5	1	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050
2R	17338366	2R_17338366_SNP [dm3] 2R_21450861_SNP [dm6]	C	G	5.649e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17338379	2R_17338379_SNP [dm3] 2R_21450874_SNP [dm6]	G	T	5.649e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24355067	3R_24355067_SNP [dm3] 3R_28529345_SNP [dm6]	G	T	5.705e^-5	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13087293	2L_13087293_SNP [dm3] 2L_13087293_SNP [dm6]	A	C	5.742e^-5	1	INTERGENIC
3R	22502604	3R_22502604_SNP [dm3] 3R_26676882_SNP [dm6]	A	G	5.851e^-5	1	INTRON beat-VII
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	5.908e^-5	1	DOWNSTREAM CR44629 & 1 other INTERGENIC
3L	5722080	3L_5722080_SNP [dm3] 3L_5728980_SNP [dm6]	G	C	5.993e^-5	1	INTRON sif
3R	22515674	3R_22515674_SNP [dm3] 3R_26689952_SNP [dm6]	A	T	6.057e^-5	1	INTERGENIC
3R	18740523	3R_18740523_SNP [dm3] 3R_22914801_SNP [dm6]	G	A	6.198e^-5	1	INTRON klg
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	6.234e^-5	1	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19974057	3R_19974057_SNP [dm3] 3R_24148335_SNP [dm6]	T	C	6.349e^-5	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
X	9414914	X_9414914_DEL [dm3] X_9520881_DEL [dm6]	AAATA	A	6.443e^-5	1	INTRON CG32700
3L	7869615	3L_7869615_SNP [dm3] 3L_7876515_SNP [dm6]	C	T	6.543e^-5	1	INTRON CG32365
3L	16716279	3L_16716279_SNP [dm3] 3L_16723179_SNP [dm6]	A	T	6.801e^-5	1	SYNONYMOUS_CODING Dab	TF binding site mE1_TFBS_cad
2R	3196806	2R_3196806_SNP [dm3] 2R_7309301_SNP [dm6]	T	A	6.845e^-5	1	INTERGENIC
3R	15166259	3R_15166259_SNP [dm3] 3R_19340537_SNP [dm6]	C	G	6.880e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	4244819	2L_4244819_SNP [dm3] 2L_4244819_SNP [dm6]	C	A	6.922e^-5	1	INTERGENIC
3R	27121028	3R_27121028_SNP [dm3] 3R_31295306_SNP [dm6]	A	C	6.991e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	20006135	X_20006135_SNP [dm3] X_20112102_SNP [dm6]	C	T	7.104e^-5	1	INTERGENIC
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	7.130e^-5	1	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
3R	19674559	3R_19674559_SNP [dm3] 3R_23848837_SNP [dm6]	C	T	7.161e^-5	1	SYNONYMOUS_CODING CG34355	TF binding site mE1_TFBS_cad
3L	9679873	3L_9679873_SNP [dm3] 3L_9686773_SNP [dm6]	T	A	7.217e^-5	1	DOWNSTREAM CG16719 INTRON CG6767
2R	7200898	2R_7200898_SNP [dm3] 2R_11313393_SNP [dm6]	C	T	7.221e^-5	1	INTRON nompA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	7.289e^-5	1	UPSTREAM para INTERGENIC
2L	7848509	2L_7848509_SNP [dm3] 2L_7848509_SNP [dm6]	T	G	7.335e^-5	1	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
2R	19277702	2R_19277702_SNP [dm3] 2R_23390179_SNP [dm6]	C	G	7.434e^-5	1	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	7.479e^-5	1	UPSTREAM para INTERGENIC
2L	13154339	2L_13154339_SNP [dm3] 2L_13154339_SNP [dm6]	A	C	7.513e^-5	1	INTERGENIC
3R	18142860	3R_18142860_DEL [dm3] 3R_22317138_DEL [dm6]	AA	A	7.514e^-5	1	INTRON CG34377
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	7.521e^-5	1	INTRON CG6154
2R	10943216	2R_10943216_SNP [dm3] 2R_15055711_SNP [dm6]	G	T	7.556e^-5	1	INTRON CG33467
3R	16890068	3R_16890068_SNP [dm3] 3R_21064346_SNP [dm6]	A	T	7.588e^-5	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3L	7864928	3L_7864928_SNP [dm3] 3L_7871828_SNP [dm6]	G	A	7.604e^-5	1	INTRON CG32365
3L	14635153	3L_14635153_SNP [dm3] 3L_14642053_SNP [dm6]	C	T	7.620e^-5	1	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10943206	2R_10943206_SNP [dm3] 2R_15055701_SNP [dm6]	G	A	7.636e^-5	1	INTRON CG33467
3L	11345778	3L_11345778_SNP [dm3] 3L_11352678_SNP [dm6]	T	G	7.678e^-5	1	INTERGENIC
2L	16197268	2L_16197268_SNP [dm3] 2L_16197268_SNP [dm6]	G	A	7.815e^-5	1	INTERGENIC
3L	13927092	3L_13927092_SNP [dm3] 3L_13933992_SNP [dm6]	G	T	7.912e^-5	1	SYNONYMOUS_CODING Gl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	7.924e^-5	1	UPSTREAM para INTERGENIC
2L	15370895	2L_15370895_SNP [dm3] 2L_15370895_SNP [dm6]	T	G	7.987e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1454151	3L_1454151_SNP [dm3] 3L_1454151_SNP [dm6]	A	G	8.021e^-5	1	INTRON Ptp61F
2R	3235030	2R_3235030_SNP [dm3] 2R_7347525_SNP [dm6]	T	C	8.023e^-5	1	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	8.085e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	8.093e^-5	1	NON_SYNONYMOUS_CODING mbc
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	8.228e^-5	1	SPLICE_SITE_REGION tow INTRON tow
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	8.266e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
X	15028010	X_15028010_SNP [dm3] X_15133977_SNP [dm6]	T	C	8.381e^-5	1	INTRON drd
3R	21234712	3R_21234712_SNP [dm3] 3R_25408990_SNP [dm6]	A	C	8.534e^-5	1	INTRON Fur1
2R	16951755	2R_16951755_SNP [dm3] 2R_21064250_SNP [dm6]	A	C	8.613e^-5	1	NON_SYNONYMOUS_CODING Cht12
2L	8965841	2L_8965841_SNP [dm3] 2L_8965841_SNP [dm6]	A	G	8.664e^-5	1	NON_SYNONYMOUS_CODING CG32984
2L	1105144	2L_1105144_SNP [dm3] 2L_1105144_SNP [dm6]	C	G	8.729e^-5	1	INTRON mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1845638	2L_1845638_SNP [dm3] 2L_1845638_SNP [dm6]	A	T	8.832e^-5	1	INTRON wry
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	8.853e^-5	1	INTRON kel
X	17251714	X_17251714_SNP [dm3] X_17357681_SNP [dm6]	A	T	8.923e^-5	1	INTERGENIC	TF binding site mE1_TFBS_Trl
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	8.923e^-5	1	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
3R	14085793	3R_14085793_INS [dm3] 3R_18260071_INS [dm6]	C	CGCCGGATTTC...	8.996e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	9033206	2R_9033206_SNP [dm3] 2R_13145701_SNP [dm6]	C	A	9.026e^-5	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
3R	15166262	3R_15166262_SNP [dm3] 3R_19340540_SNP [dm6]	A	C	9.184e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16214591	2L_16214591_SNP [dm3] 2L_16214591_SNP [dm6]	G	C	9.197e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9414881	X_9414881_SNP [dm3] X_9520848_SNP [dm6]	T	A	9.225e^-5	1	INTRON CG32700
2L	992670	2L_992670_DEL [dm3] 2L_992670_DEL [dm6]	AACAGTGGA	A	9.285e^-5	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22515663	3R_22515663_SNP [dm3] 3R_26689941_SNP [dm6]	G	A	9.486e^-5	1	INTERGENIC
2R	17929116	2R_17929116_SNP [dm3] 2R_22041611_SNP [dm6]	C	G	9.551e^-5	1	DOWNSTREAM PpD5 INTERGENIC
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	9.565e^-5	1	INTRON trol
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	9.574e^-5	1	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
X	17922062	X_17922062_SNP [dm3] X_18028029_SNP [dm6]	T	A	9.917e^-5	1	INTRON Sh & 1 other
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	9.918e^-5	1	UTR_3_PRIME CG42741 INTRON twi
2L	10258219	2L_10258219_SNP [dm3] 2L_10258219_SNP [dm6]	T	C	9.940e^-5	1	INTRON Pten
2R	6588378	2R_6588378_SNP [dm3] 2R_10700873_SNP [dm6]	T	C	1.000e^-4	1	INTRON stan
3L	12509254	3L_12509254_SNP [dm3] 3L_12516154_SNP [dm6]	A	T	1.000e^-4	1	INTRON tral	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	21345656	3R_21345656_SNP [dm3] 3R_25519934_SNP [dm6]	A	T	1.001e^-4	1	INTRON msi
2L	13824704	2L_13824704_SNP [dm3] 2L_13824704_SNP [dm6]	T	C	1.002e^-4	1	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20006063	X_20006063_SNP [dm3] X_20112030_SNP [dm6]	G	A	1.002e^-4	1	INTERGENIC
2R	17896538	2R_17896538_SNP [dm3] 2R_22009033_SNP [dm6]	A	G	1.003e^-4	1	INTRON CG34370
2L	5822828	2L_5822828_SNP [dm3] 2L_5822828_SNP [dm6]	T	A	1.020e^-4	1	INTERGENIC
3L	12847350	3L_12847350_SNP [dm3] 3L_12854250_SNP [dm6]	T	C	1.020e^-4	1	SYNONYMOUS_CODING Ent3
X	16428055	X_16428055_SNP [dm3] X_16534022_SNP [dm6]	C	T	1.026e^-4	1	UPSTREAM para INTERGENIC
X	9414837	X_9414837_DEL [dm3] X_9520804_DEL [dm6]	GC	G	1.026e^-4	1	INTRON CG32700
3L	4307576	3L_4307576_SNP [dm3] 3L_4307576_SNP [dm6]	T	C	1.029e^-4	1	UTR_5_PRIME dyl
2R	20589816	2R_20589816_SNP [dm3] 2R_24702293_SNP [dm6]	A	G	1.033e^-4	1	INTRON Mid1
2L	18151861	2L_18151861_SNP [dm3] 2L_18151861_SNP [dm6]	A	G	1.033e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Stat92E
3R	18740517	3R_18740517_SNP [dm3] 3R_22914795_SNP [dm6]	A	G	1.038e^-4	1	INTRON klg
3R	21234563	3R_21234563_SNP [dm3] 3R_25408841_SNP [dm6]	T	C	1.043e^-4	1	INTRON Fur1
2R	16538400	2R_16538400_SNP [dm3] 2R_20650895_SNP [dm6]	A	G	1.043e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.048e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.048e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	1.051e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	1.051e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	1.051e^-4	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	15163581	3R_15163581_SNP [dm3] 3R_19337859_SNP [dm6]	T	C	1.055e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	15166312	3R_15166312_SNP [dm3] 3R_19340590_SNP [dm6]	A	T	1.055e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	4306834	3L_4306834_SNP [dm3] 3L_4306834_SNP [dm6]	G	A	1.057e^-4	1	INTRON dyl
2R	17322607	2R_17322607_SNP [dm3] 2R_21435102_SNP [dm6]	C	T	1.061e^-4	1	INTRON Sdc
2L	5563305	2L_5563305_SNP [dm3] 2L_5563305_SNP [dm6]	A	G	1.063e^-4	1	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
2L	7088704	2L_7088704_SNP [dm3] 2L_7088704_SNP [dm6]	C	G	1.066e^-4	1	INTERGENIC	transposable element FlyBase
2R	6468279	2R_6468279_SNP [dm3] 2R_10580774_SNP [dm6]	A	T	1.068e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	15227505	3L_15227505_DEL [dm3] 3L_15234405_DEL [dm6]	CGCC	C	1.078e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	7720516	3L_7720516_SNP [dm3] 3L_7727416_SNP [dm6]	T	C	1.082e^-4	1	UPSTREAM CG7457 DOWNSTREAM CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16236466	2L_16236466_SNP [dm3] 2L_16236466_SNP [dm6]	T	C	1.087e^-4	1	SYNONYMOUS_CODING CG42817	TF binding site mE1_TFBS_sens
2L	3084823	2L_3084823_SNP [dm3] 2L_3084823_SNP [dm6]	C	G	1.089e^-4	1	INTRON toc
3L	10994091	3L_10994091_SNP [dm3] 3L_11000991_SNP [dm6]	A	C	1.103e^-4	1	DOWNSTREAM snoRNA:Me18S-G962 INTRON klu
X	20006040	X_20006040_SNP [dm3] X_20112007_SNP [dm6]	T	C	1.115e^-4	1	INTERGENIC
2L	4015849	2L_4015849_SNP [dm3] 2L_4015849_SNP [dm6]	A	T	1.117e^-4	1	INTERGENIC
2L	15949256	2L_15949256_SNP [dm3] 2L_15949256_SNP [dm6]	C	T	1.126e^-4	1	INTRON beat-Ib
3L	12508542	3L_12508542_SNP [dm3] 3L_12515442_SNP [dm6]	G	A	1.138e^-4	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	13140542	2L_13140542_SNP [dm3] 2L_13140542_SNP [dm6]	C	T	1.140e^-4	1	INTERGENIC
2R	3198025	2R_3198025_SNP [dm3] 2R_7310520_SNP [dm6]	A	C	1.165e^-4	1	UPSTREAM CG12164 INTERGENIC
2L	12607603	2L_12607603_SNP [dm3] 2L_12607603_SNP [dm6]	C	G	1.168e^-4	1	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11772957	2R_11772957_SNP [dm3] 2R_15885452_SNP [dm6]	T	C	1.174e^-4	1	SYNONYMOUS_CODING sli	TF binding site mE1_TFBS_sens
2L	5824641	2L_5824641_SNP [dm3] 2L_5824641_SNP [dm6]	A	C	1.178e^-4	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
2L	14959481	2L_14959481_SNP [dm3] 2L_14959481_SNP [dm6]	C	T	1.190e^-4	1	INTRON CG42313
3L	1588205	3L_1588205_SNP [dm3] 3L_1588205_SNP [dm6]	T	C	1.197e^-4	1	INTRON CG13917
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	1.199e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	16006275	3R_16006275_SNP [dm3] 3R_20180553_SNP [dm6]	A	G	1.208e^-4	1	INTERGENIC
3R	22530172	3R_22530172_SNP [dm3] 3R_26704450_SNP [dm6]	T	C	1.218e^-4	1	INTRON amon
3R	15166309	3R_15166309_INS [dm3] 3R_19340587_INS [dm6]	A	AA	1.224e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11680182	3L_11680182_SNP [dm3] 3L_11687082_SNP [dm6]	G	A	1.225e^-4	1	SYNONYMOUS_CODING Sug	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14228649	3R_14228649_SNP [dm3] 3R_18402927_SNP [dm6]	G	A	1.227e^-4	1	UPSTREAM koko & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
X	19228775	X_19228775_SNP [dm3] X_19334742_SNP [dm6]	C	T	1.232e^-4	1	INTRON nAChRalpha7
3R	10272102	3R_10272102_SNP [dm3] 3R_14446380_SNP [dm6]	C	A	1.232e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da
X	18392009	X_18392009_SNP [dm3] X_18497976_SNP [dm6]	T	C	1.236e^-4	1	SYNONYMOUS_CODING GalNAc-T2
X	2576386	X_2576386_SNP [dm3] X_2682353_SNP [dm6]	T	A	1.237e^-4	1	NON_SYNONYMOUS_CODING CG2652 UPSTREAM HLH3B DOWNSTREAM CR44470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7497990	2L_7497990_DEL [dm3] 2L_7497990_DEL [dm6]	TT	T	1.247e^-4	1	UTR_3_PRIME RapGAP1 UPSTREAM Obp28a
2L	18302498	2L_18302498_SNP [dm3] 2L_18302498_SNP [dm6]	G	A	1.250e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19330984	2L_19330984_SNP [dm3] 2L_19330984_SNP [dm6]	T	G	1.262e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12601069	X_12601069_SNP [dm3] X_12707036_SNP [dm6]	C	T	1.266e^-4	1	NON_SYNONYMOUS_CODING CG15725 INTRON Smr
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	1.267e^-4	1	INTRON CG13917
3L	11663862	3L_11663862_SNP [dm3] 3L_11670762_SNP [dm6]	A	G	1.272e^-4	1	INTRON CG32085
3R	15166328	3R_15166328_SNP [dm3] 3R_19340606_SNP [dm6]	G	A	1.274e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	18136452	2L_18136452_SNP [dm3] 2L_18136452_SNP [dm6]	G	A	1.274e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
2R	12039752	2R_12039752_SNP [dm3] 2R_16152247_SNP [dm6]	A	T	1.277e^-4	1	INTRON lbk	transposable element FlyBase
2L	17309448	2L_17309448_SNP [dm3] 2L_17309448_SNP [dm6]	G	A	1.278e^-4	1	INTERGENIC
3R	10114736	3R_10114736_SNP [dm3] 3R_14289014_SNP [dm6]	G	A	1.278e^-4	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19277488	2R_19277488_SNP [dm3] 2R_23389965_SNP [dm6]	A	T	1.290e^-4	1	DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13140524	2L_13140524_SNP [dm3] 2L_13140524_SNP [dm6]	T	C	1.291e^-4	1	INTERGENIC
X	16855642	X_16855642_SNP [dm3] X_16961609_SNP [dm6]	C	A	1.295e^-4	1	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22515239	3R_22515239_SNP [dm3] 3R_26689517_SNP [dm6]	G	T	1.298e^-4	1	INTERGENIC
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	1.306e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	6333686	X_6333686_SNP [dm3] X_6439653_SNP [dm6]	C	T	1.324e^-4	1	INTRON CG42340
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	1.327e^-4	1	INTRON Ptp61F
3L	6928979	3L_6928979_SNP [dm3] 3L_6935879_SNP [dm6]	G	T	1.332e^-4	1	UPSTREAM CR45414 EXON CR45415
3L	3598631	3L_3598631_SNP [dm3] 3L_3598631_SNP [dm6]	C	T	1.332e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_cad
3R	14394837	3R_14394837_SNP [dm3] 3R_18569115_SNP [dm6]	A	T	1.336e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9414877	X_9414877_SNP [dm3] X_9520844_SNP [dm6]	G	T	1.339e^-4	1	INTRON CG32700
3L	12058862	3L_12058862_SNP [dm3] 3L_12065762_SNP [dm6]	G	A	1.349e^-4	1	UPSTREAM rols INTERGENIC
2L	7417360	2L_7417360_INS [dm3] 2L_7417360_INS [dm6]	T	TTT	1.350e^-4	1	INTRON chm	TF binding site BDTNP1_TFBS_dl
3R	21345601	3R_21345601_INS [dm3] 3R_25519879_INS [dm6]	G	GAAAACTAG	1.354e^-4	1	INTRON msi
2R	6717711	2R_6717711_SNP [dm3] 2R_10830206_SNP [dm6]	G	T	1.357e^-4	1	INTRON CG12344
X	2097613	X_2097613_SNP [dm3] X_2203580_SNP [dm6]	C	T	1.358e^-4	1	SYNONYMOUS_CODING CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	1.362e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9639085	3L_9639085_SNP [dm3] 3L_9645985_SNP [dm6]	C	G	1.363e^-4	1	INTRON fry & 1 other
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	1.376e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15166285	3R_15166285_INS [dm3] 3R_19340563_INS [dm6]	T	TAGC	1.379e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	1.386e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18302517	2L_18302517_SNP [dm3] 2L_18302517_SNP [dm6]	G	A	1.391e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	1.398e^-4	1	INTRON dnt	TF binding site mE1_TFBS_cad
2R	19277469	2R_19277469_SNP [dm3] 2R_23389946_SNP [dm6]	A	G	1.406e^-4	1	SPLICE_SITE_REGION CG3530 DOWNSTREAM eIF2B-delta INTRON CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20006075	X_20006075_SNP [dm3] X_20112042_SNP [dm6]	T	G	1.409e^-4	1	INTERGENIC
3L	15287505	3L_15287505_DEL [dm3] 3L_15294405_DEL [dm6]	GGGCAAATGCAGAAATG...	G	1.412e^-4	1	INTERGENIC
3L	7614631	3L_7614631_SNP [dm3] 3L_7621531_SNP [dm6]	C	A	1.426e^-4	1	INTRON CG33275	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10705136	3L_10705136_SNP [dm3] 3L_10712036_SNP [dm6]	A	G	1.434e^-4	1	INTERGENIC
2L	5824551	2L_5824551_SNP [dm3] 2L_5824551_SNP [dm6]	A	T	1.441e^-4	1	START_GAINED TrissinR UTR_5_PRIME TrissinR UPSTREAM TrissinR
X	2574243	X_2574243_DEL [dm3] X_2680210_DEL [dm6]	GAA	G	1.445e^-4	1	UTR_3_PRIME HLH3B DOWNSTREAM sgg
2R	6786077	2R_6786077_SNP [dm3] 2R_10898572_SNP [dm6]	G	A	1.456e^-4	1	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3128751	2L_3128751_SNP [dm3] 2L_3128751_SNP [dm6]	C	A	1.459e^-4	1	UTR_5_PRIME CG15403 INTRON toc
3L	6939089	3L_6939089_SNP [dm3] 3L_6945989_SNP [dm6]	A	T	1.462e^-4	1	INTRON tow	TF binding site mE1_TFBS_Kr
3R	19973900	3R_19973900_SNP [dm3] 3R_24148178_SNP [dm6]	A	T	1.470e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	8972660	2L_8972660_SNP [dm3] 2L_8972660_SNP [dm6]	G	C	1.470e^-4	1	INTRON CG9541
2L	18132765	2L_18132765_SNP [dm3] 2L_18132765_SNP [dm6]	T	C	1.478e^-4	1	INTRON kel
2R	16522079	2R_16522079_SNP [dm3] 2R_20634574_SNP [dm6]	C	A	1.484e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
3R	15676428	3R_15676428_SNP [dm3] 3R_19850706_SNP [dm6]	C	A	1.494e^-4	1	INTRON CG4662
3R	20839829	3R_20839829_SNP [dm3] 3R_25014107_SNP [dm6]	C	T	1.497e^-4	1	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9033267	2R_9033267_SNP [dm3] 2R_13145762_SNP [dm6]	A	G	1.501e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	1.502e^-4	1	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4289569	X_4289569_SNP [dm3] X_4395536_SNP [dm6]	C	T	1.505e^-4	1	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20300848	3R_20300848_SNP [dm3] 3R_24475126_SNP [dm6]	A	G	1.512e^-4	1	INTERGENIC
2L	8082134	2L_8082134_SNP [dm3] 2L_8082134_SNP [dm6]	A	T	1.516e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082135	2L_8082135_SNP [dm3] 2L_8082135_SNP [dm6]	A	G	1.516e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	8922229	2R_8922229_SNP [dm3] 2R_13034724_SNP [dm6]	T	A	1.516e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2224434	X_2224434_SNP [dm3] X_2330401_SNP [dm6]	T	C	1.517e^-4	1	INTRON phl & 1 other
2L	21771735	2L_21771735_SNP [dm3] 2L_21771735_SNP [dm6]	C	A	1.522e^-4	1	INTRON CG31612
X	14955301	X_14955301_SNP [dm3] X_15061268_SNP [dm6]	A	T	1.523e^-4	1	INTRON hiw
2R	17042675	2R_17042675_SNP [dm3] 2R_21155170_SNP [dm6]	T	G	1.526e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	1.530e^-4	1	INTRON CG13579
X	22078695	X_22078695_SNP [dm3] X_22676859_SNP [dm6]	T	A	1.533e^-4	1	INTRON CR44997
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	1.566e^-4	1	UPSTREAM para INTERGENIC
X	2088787	X_2088787_SNP [dm3] X_2194754_SNP [dm6]	G	A	1.566e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	17308970	2L_17308970_SNP [dm3] 2L_17308970_SNP [dm6]	T	C	1.567e^-4	1	INTERGENIC
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	1.572e^-4	1	UPSTREAM dnc INTRON dnc
3L	1084010	3L_1084010_SNP [dm3] 3L_1084010_SNP [dm6]	C	T	1.572e^-4	1	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	16213421	2L_16213421_DEL [dm3] 2L_16213421_DEL [dm6]	GAG	G	1.587e^-4	1	DOWNSTREAM CG31819 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14022550	3L_14022550_SNP [dm3] 3L_14029450_SNP [dm6]	G	A	1.597e^-4	1	UPSTREAM ptip DOWNSTREAM endos INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8922111	2R_8922111_SNP [dm3] 2R_13034606_SNP [dm6]	C	G	1.604e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27122971	3R_27122971_SNP [dm3] 3R_31297249_SNP [dm6]	G	T	1.615e^-4	1	INTERGENIC
2L	5856812	2L_5856812_SNP [dm3] 2L_5856812_SNP [dm6]	G	A	1.624e^-4	1	DOWNSTREAM TrissinR INTERGENIC
3R	16006326	3R_16006326_SNP [dm3] 3R_20180604_SNP [dm6]	G	A	1.641e^-4	1	INTERGENIC
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	1.643e^-4	1	INTRON rgn
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	1.649e^-4	1	INTRON Pkc53E
3R	26120092	3R_26120092_SNP [dm3] 3R_30294370_SNP [dm6]	G	T	1.658e^-4	1	INTRON hdc
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	1.661e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3R	22530236	3R_22530236_SNP [dm3] 3R_26704514_SNP [dm6]	A	C	1.664e^-4	1	INTRON amon
2L	18134945	2L_18134945_SNP [dm3] 2L_18134945_SNP [dm6]	G	A	1.670e^-4	1	INTRON kel	TF binding site mE1_TFBS_cad
2R	16579314	2R_16579314_SNP [dm3] 2R_20691809_SNP [dm6]	C	A	1.670e^-4	1	UPSTREAM CR44659 INTERGENIC
3R	15166245	3R_15166245_SNP [dm3] 3R_19340523_SNP [dm6]	T	A	1.671e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	1.677e^-4	1	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18131398	2L_18131398_SNP [dm3] 2L_18131398_SNP [dm6]	T	C	1.682e^-4	1	SYNONYMOUS_CODING kel UTR_3_PRIME kel	TF binding site mE1_TFBS_HSA
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	1.692e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16006333	3R_16006333_SNP [dm3] 3R_20180611_SNP [dm6]	T	A	1.694e^-4	1	INTERGENIC
3R	1766247	3R_1766247_SNP [dm3] 3R_5940525_SNP [dm6]	C	A	1.696e^-4	1	INTRON CG34113
3L	11305284	3L_11305284_SNP [dm3] 3L_11312184_SNP [dm6]	A	G	1.699e^-4	1	NON_SYNONYMOUS_CODING CG7573
3R	19974117	3R_19974117_SNP [dm3] 3R_24148395_SNP [dm6]	T	C	1.704e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	3084820	2L_3084820_SNP [dm3] 2L_3084820_SNP [dm6]	G	A	1.706e^-4	1	INTRON toc
2L	2445360	2L_2445360_SNP [dm3] 2L_2445360_SNP [dm6]	G	A	1.710e^-4	1	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
2R	16579319	2R_16579319_SNP [dm3] 2R_20691814_SNP [dm6]	C	T	1.711e^-4	1	UPSTREAM CR44659 INTERGENIC
3R	20839824	3R_20839824_SNP [dm3] 3R_25014102_SNP [dm6]	G	A	1.728e^-4	1	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21345644	3R_21345644_SNP [dm3] 3R_25519922_SNP [dm6]	A	G	1.731e^-4	1	INTRON msi
X	16428015	X_16428015_SNP [dm3] X_16533982_SNP [dm6]	T	A	1.747e^-4	1	UPSTREAM para INTERGENIC
2L	12605463	2L_12605463_SNP [dm3] 2L_12605463_SNP [dm6]	A	G	1.752e^-4	1	INTRON nub
2L	17184878	2L_17184878_SNP [dm3] 2L_17184878_SNP [dm6]	G	A	1.755e^-4	1	INTERGENIC
3L	6940947	3L_6940947_SNP [dm3] 3L_6947847_SNP [dm6]	C	A	1.762e^-4	1	SYNONYMOUS_CODING tow
2L	18136954	2L_18136954_SNP [dm3] 2L_18136954_SNP [dm6]	A	T	1.774e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3964524	2L_3964524_SNP [dm3] 2L_3964524_SNP [dm6]	G	A	1.779e^-4	1	INTRON fred
2R	12565726	2R_12565726_SNP [dm3] 2R_16678221_SNP [dm6]	G	C	1.779e^-4	1	INTRON CG30463
2L	7536172	2L_7536172_SNP [dm3] 2L_7536172_SNP [dm6]	G	A	1.784e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1588334	3L_1588334_SNP [dm3] 3L_1588334_SNP [dm6]	A	C	1.812e^-4	1	INTRON CG13917
3R	14080050	3R_14080050_SNP [dm3] 3R_18254328_SNP [dm6]	T	A	1.815e^-4	1	INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
3L	9055731	3L_9055731_SNP [dm3] 3L_9062631_SNP [dm6]	C	T	1.825e^-4	1	INTRON Argk
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	1.829e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16698256	3L_16698256_SNP [dm3] 3L_16705156_SNP [dm6]	C	T	1.831e^-4	1	NON_SYNONYMOUS_CODING CG9692 UTR_5_PRIME CG9692 INTRON Lasp & 1 other
2R	14557484	2R_14557484_SNP [dm3] 2R_18669979_SNP [dm6]	T	C	1.837e^-4	1	INTRON edl
X	3714568	X_3714568_SNP [dm3] X_3820535_SNP [dm6]	A	G	1.859e^-4	1	DOWNSTREAM tRNA:CR32785 INTRON ec
2R	11161908	2R_11161908_SNP [dm3] 2R_15274403_SNP [dm6]	C	T	1.859e^-4	1	INTRON Trpm
3R	21345702	3R_21345702_SNP [dm3] 3R_25519980_SNP [dm6]	T	C	1.869e^-4	1	INTRON msi
X	16855408	X_16855408_SNP [dm3] X_16961375_SNP [dm6]	G	A	1.884e^-4	1	SYNONYMOUS_CODING CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18136475	2L_18136475_SNP [dm3] 2L_18136475_SNP [dm6]	G	A	1.892e^-4	1	INTRON kel	TF binding site BDTNP1_TFBS_dl
X	17166838	X_17166838_SNP [dm3] X_17272805_SNP [dm6]	T	C	1.899e^-4	1	INTRON f	TF binding site mE1_TFBS_cad
X	19204792	X_19204792_SNP [dm3] X_19310759_SNP [dm6]	A	T	1.900e^-4	1	UTR_3_PRIME out DOWNSTREAM out
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	1.905e^-4	1	INTRON CG13579
2R	17761830	2R_17761830_SNP [dm3] 2R_21874325_SNP [dm6]	A	T	1.908e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6333767	X_6333767_SNP [dm3] X_6439734_SNP [dm6]	C	T	1.919e^-4	1	INTRON CG42340
3R	24355061	3R_24355061_SNP [dm3] 3R_28529339_SNP [dm6]	G	A	1.933e^-4	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11795482	3L_11795482_SNP [dm3] 3L_11802382_SNP [dm6]	A	G	1.950e^-4	1	SYNONYMOUS_CODING CG42255 UPSTREAM tRNA:CR32093
2L	16497741	2L_16497741_SNP [dm3] 2L_16497741_SNP [dm6]	A	T	1.962e^-4	1	INTRON Tpr2
X	2096260	X_2096260_SNP [dm3] X_2202227_SNP [dm6]	C	T	1.964e^-4	1	UPSTREAM CR43637 INTRON Mct1 & 1 other
2R	12049529	2R_12049529_SNP [dm3] 2R_16162024_SNP [dm6]	T	C	1.965e^-4	1	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19726813	X_19726813_SNP [dm3] X_19832780_SNP [dm6]	A	T	1.983e^-4	1	UTR_3_PRIME pico
3R	10114753	3R_10114753_SNP [dm3] 3R_14289031_SNP [dm6]	G	T	1.992e^-4	1	UPSTREAM CG12207 DOWNSTREAM CR45596 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13723717	2L_13723717_SNP [dm3] 2L_13723717_SNP [dm6]	A	C	2.009e^-4	1	UPSTREAM CG9014 INTERGENIC
2L	13723719	2L_13723719_DEL [dm3] 2L_13723719_DEL [dm6]	CCT	A	2.009e^-4	1	UPSTREAM CG9014 INTERGENIC
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	2.014e^-4	1	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9032598	2R_9032598_SNP [dm3] 2R_13145093_SNP [dm6]	T	C	2.017e^-4	1	UTR_3_PRIME Ack-like INTRON Ack-like
2R	12090681	2R_12090681_SNP [dm3] 2R_16203176_SNP [dm6]	C	T	2.020e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	2.020e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
X	5047655	X_5047655_SNP [dm3] X_5153622_SNP [dm6]	T	A	2.025e^-4	1	INTRON rg & 1 other
X	19737547	X_19737547_SNP [dm3] X_19843514_SNP [dm6]	C	G	2.025e^-4	1	INTRON pico	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21346072	3R_21346072_SNP [dm3] 3R_25520350_SNP [dm6]	T	G	2.046e^-4	1	INTRON msi
2R	3288046	2R_3288046_SNP [dm3] 2R_7400541_SNP [dm6]	C	T	2.048e^-4	1	UPSTREAM CG11112 INTRON Eaf
2R	1429560	2R_1429560_SNP [dm3] 2R_5542055_SNP [dm6]	A	T	2.064e^-4	1	INTRON CG30438
X	6556940	X_6556940_SNP [dm3] X_6662907_SNP [dm6]	A	T	2.071e^-4	1	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15698415	3L_15698415_SNP [dm3] 3L_15705315_SNP [dm6]	A	G	2.073e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	3222589	X_3222589_SNP [dm3] X_3328556_SNP [dm6]	T	G	2.073e^-4	1	UPSTREAM dnc INTRON CR44886 & 1 other
X	13035336	X_13035336_SNP [dm3] X_13141303_SNP [dm6]	G	A	2.085e^-4	1	INTRON CG32645
2L	19330991	2L_19330991_SNP [dm3] 2L_19330991_SNP [dm6]	C	T	2.102e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	5061050	X_5061050_INS [dm3] X_5167017_INS [dm6]	T	TAT	2.113e^-4	1	INTRON rg & 1 other
2L	7984561	2L_7984561_SNP [dm3] 2L_7984561_SNP [dm6]	C	A	2.115e^-4	1	UTR_5_PRIME CG7231 UPSTREAM Snoo & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	17430389	X_17430389_SNP [dm3] X_17536356_SNP [dm6]	A	C	2.123e^-4	1	INTRON CG43658
3R	17684793	3R_17684793_SNP [dm3] 3R_21859071_SNP [dm6]	A	C	2.124e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18152506	2L_18152506_SNP [dm3] 2L_18152506_SNP [dm6]	T	G	2.140e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3R	4527664	3R_4527664_SNP [dm3] 3R_8701942_SNP [dm6]	A	T	2.145e^-4	1	INTERGENIC	enhancer FlyBase TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	8713316	2L_8713316_SNP [dm3] 2L_8713316_SNP [dm6]	T	C	2.157e^-4	1	SYNONYMOUS_CODING raw
3L	15625903	3L_15625903_INS [dm3] 3L_15632803_INS [dm6]	T	TT	2.158e^-4	1	SPLICE_SITE_REGION comm3 UTR_5_PRIME comm3 UPSTREAM comm3 INTRON comm3
3R	19721420	3R_19721420_SNP [dm3] 3R_23895698_SNP [dm6]	A	T	2.159e^-4	1	INTRON sba
3R	22530164	3R_22530164_SNP [dm3] 3R_26704442_SNP [dm6]	A	C	2.193e^-4	1	INTRON amon
X	17251717	X_17251717_SNP [dm3] X_17357684_SNP [dm6]	T	G	2.195e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	2.204e^-4	1	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	2.207e^-4	1	INTERGENIC
3R	18263625	3R_18263625_SNP [dm3] 3R_22437903_SNP [dm6]	A	G	2.221e^-4	1	INTERGENIC
3L	7468668	3L_7468668_DEL [dm3] 3L_7475568_DEL [dm6]	TTGCTAT	T	2.226e^-4	1	UTR_5_PRIME CG43292 UPSTREAM CG43292 INTRAGENIC CG43292 INTERGENIC
3R	12016296	3R_12016296_SNP [dm3] 3R_16190574_SNP [dm6]	G	A	2.231e^-4	1	INTRON sra
X	19726815	X_19726815_INS [dm3] X_19832782_INS [dm6]	T	TGT	2.247e^-4	1	UTR_3_PRIME pico
2R	8921289	2R_8921289_SNP [dm3] 2R_13033784_SNP [dm6]	A	G	2.249e^-4	1	INTERGENIC
2L	2445317	2L_2445317_DEL [dm3] 2L_2445317_DEL [dm6]	TGCAT	T	2.252e^-4	1	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
3L	9057419	3L_9057419_SNP [dm3] 3L_9064319_SNP [dm6]	T	C	2.256e^-4	1	INTRON Argk	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4015866	2L_4015866_SNP [dm3] 2L_4015866_SNP [dm6]	A	G	2.275e^-4	1	INTERGENIC
2R	12420001	2R_12420001_SNP [dm3] 2R_16532496_SNP [dm6]	A	G	2.287e^-4	1	UTR_3_PRIME Sema-2a
3L	15908842	3L_15908842_INS [dm3] 3L_15915742_INS [dm6]	A	ATAA	2.291e^-4	1	INTRON sff
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	2.292e^-4	1	INTERGENIC
3L	18098841	3L_18098841_INS [dm3] 3L_18105741_INS [dm6]	G	GAG	2.293e^-4	1	UTR_5_PRIME CG13698 UPSTREAM mRpS26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11523674	3L_11523674_SNP [dm3] 3L_11530574_SNP [dm6]	G	A	2.300e^-4	1	INTRON Mob2
2R	8922168	2R_8922168_SNP [dm3] 2R_13034663_SNP [dm6]	T	A	2.309e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2576332	X_2576332_SNP [dm3] X_2682299_SNP [dm6]	C	T	2.324e^-4	1	NON_SYNONYMOUS_CODING CG2652 UPSTREAM HLH3B DOWNSTREAM CR44470	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_slp1 mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21346062	3R_21346062_SNP [dm3] 3R_25520340_SNP [dm6]	C	G	2.335e^-4	1	INTRON msi
X	17922048	X_17922048_SNP [dm3] X_18028015_SNP [dm6]	A	T	2.339e^-4	1	INTRON Sh & 1 other
2R	16522034	2R_16522034_SNP [dm3] 2R_20634529_SNP [dm6]	A	G	2.344e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
2R	16522052	2R_16522052_SNP [dm3] 2R_20634547_SNP [dm6]	C	T	2.344e^-4	1	SYNONYMOUS_CODING rig	TF binding site mE1_TFBS_cad
3L	2662294	3L_2662294_SNP [dm3] 3L_2662294_SNP [dm6]	T	C	2.346e^-4	1	DOWNSTREAM CG33233 INTRON Fife & 1 other
3R	20300764	3R_20300764_SNP [dm3] 3R_24475042_SNP [dm6]	G	A	2.352e^-4	1	INTERGENIC
X	9414926	X_9414926_DEL [dm3] X_9520893_DEL [dm6]	TTC	T	2.359e^-4	1	INTRON CG32700
2R	11772921	2R_11772921_SNP [dm3] 2R_15885416_SNP [dm6]	A	C	2.393e^-4	1	SYNONYMOUS_CODING sli	TF binding site mE1_TFBS_sens
3R	12720506	3R_12720506_DEL [dm3] 3R_16894784_DEL [dm6]	CC	C	2.399e^-4	1	INTRON iab-8 & 1 other
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	2.416e^-4	1	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
3L	17966051	3L_17966051_SNP [dm3] 3L_17972951_SNP [dm6]	C	T	2.417e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	17966155	3L_17966155_SNP [dm3] 3L_17973055_SNP [dm6]	T	A	2.417e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	17968708	3L_17968708_SNP [dm3] 3L_17975608_SNP [dm6]	G	A	2.417e^-4	1	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15254318	3L_15254318_INS [dm3] 3L_15261218_INS [dm6]	T	TAAATCTAT	2.428e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16985991	2R_16985991_SNP [dm3] 2R_21098486_SNP [dm6]	T	C	2.432e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	5215978	2R_5215978_SNP [dm3] 2R_9328473_SNP [dm6]	A	T	2.433e^-4	1	INTRON CG13954 & 1 other
2L	12189316	2L_12189316_SNP [dm3] 2L_12189316_SNP [dm6]	T	C	2.437e^-4	1	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	2.437e^-4	1	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23478345	3R_23478345_SNP [dm3] 3R_27652623_SNP [dm6]	A	G	2.442e^-4	1	UPSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_bab1
3L	17681795	3L_17681795_SNP [dm3] 3L_17688695_SNP [dm6]	C	T	2.453e^-4	1	INTERGENIC
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	2.457e^-4	1	INTRON CG34362
2L	3861269	2L_3861269_SNP [dm3] 2L_3861269_SNP [dm6]	G	T	2.462e^-4	1	DOWNSTREAM CR44078 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15304197	3L_15304197_SNP [dm3] 3L_15311097_SNP [dm6]	A	G	2.466e^-4	1	UTR_3_PRIME CG7255
X	3184944	X_3184944_SNP [dm3] X_3290911_SNP [dm6]	T	G	2.483e^-4	1	UPSTREAM dnc INTRON dnc
X	17383065	X_17383065_SNP [dm3] X_17489032_SNP [dm6]	A	C	2.485e^-4	1	UTR_5_PRIME CG43658 INTRON CG43658
2R	18956721	2R_18956721_SNP [dm3] 2R_23069198_SNP [dm6]	A	C	2.487e^-4	1	UPSTREAM l_2_k09913 INTRON l_2_k09913
2L	7986739	2L_7986739_SNP [dm3] 2L_7986739_SNP [dm6]	C	A	2.491e^-4	1	UTR_3_PRIME CG7231 DOWNSTREAM pes
2R	20092704	2R_20092704_SNP [dm3] 2R_24205181_SNP [dm6]	G	T	2.495e^-4	1	UTR_3_PRIME CG11406 INTRON CG11406
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	2.496e^-4	1	INTRON Sh
2R	4199862	2R_4199862_DEL [dm3] 2R_8312357_DEL [dm6]	TCTCA	T	2.497e^-4	1	DOWNSTREAM CR44450 INTERGENIC
2L	21847668	2L_21847668_SNP [dm3] 2L_21847668_SNP [dm6]	C	T	2.499e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6571997	2L_6571997_SNP [dm3] 2L_6571997_SNP [dm6]	A	C	2.501e^-4	1	UTR_3_PRIME CG11319 INTRON CG11319
2L	12905521	2L_12905521_SNP [dm3] 2L_12905521_SNP [dm6]	G	A	2.504e^-4	1	INTERGENIC
X	2755744	X_2755744_INS [dm3] X_2861711_INS [dm6]	G	GG	2.504e^-4	1	INTRON kirre
X	6556860	X_6556860_SNP [dm3] X_6662827_SNP [dm6]	A	T	2.507e^-4	1	INTRON Ctr1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7125347	2R_7125347_SNP [dm3] 2R_11237842_SNP [dm6]	G	A	2.508e^-4	1	UPSTREAM CG34224 DOWNSTREAM CG13216 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22227453	3R_22227453_SNP [dm3] 3R_26401731_SNP [dm6]	A	T	2.509e^-4	1	DOWNSTREAM ppk15 INTERGENIC
2L	18137706	2L_18137706_SNP [dm3] 2L_18137706_SNP [dm6]	G	A	2.513e^-4	1	SYNONYMOUS_CODING kel DOWNSTREAM Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9638879	3L_9638879_SNP [dm3] 3L_9645779_SNP [dm6]	T	A	2.513e^-4	1	INTRON fry & 1 other
2L	19275768	2L_19275768_SNP [dm3] 2L_19275768_SNP [dm6]	C	G	2.521e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10699798	3L_10699798_SNP [dm3] 3L_10706698_SNP [dm6]	A	T	2.528e^-4	1	INTERGENIC
2L	18152648	2L_18152648_SNP [dm3] 2L_18152648_SNP [dm6]	A	G	2.529e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	6556928	X_6556928_SNP [dm3] X_6662895_SNP [dm6]	A	G	2.530e^-4	1	INTRON Ctr1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13648640	3R_13648640_SNP [dm3] 3R_17822918_SNP [dm6]	G	A	2.531e^-4	1	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3281850	2R_3281850_SNP [dm3] 2R_7394345_SNP [dm6]	G	T	2.535e^-4	1	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
X	2998649	X_2998649_SNP [dm3] X_3104616_SNP [dm6]	A	G	2.538e^-4	1	INTRON kirre
3L	7468703	3L_7468703_SNP [dm3] 3L_7475603_SNP [dm6]	T	C	2.547e^-4	1	UTR_5_PRIME CG43292
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	2.547e^-4	1	INTERGENIC
3R	21234687	3R_21234687_SNP [dm3] 3R_25408965_SNP [dm6]	C	G	2.549e^-4	1	INTRON Fur1
X	19727082	X_19727082_SNP [dm3] X_19833049_SNP [dm6]	G	A	2.557e^-4	1	UTR_3_PRIME pico
3R	23204767	3R_23204767_SNP [dm3] 3R_27379045_SNP [dm6]	A	T	2.560e^-4	1	UTR_3_PRIME side INTRON side
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	2.565e^-4	1	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	8243846	2L_8243846_SNP [dm3] 2L_8243846_SNP [dm6]	C	T	2.572e^-4	1	SYNONYMOUS_CODING CG43057 DOWNSTREAM CG8086 & 1 other
X	13656452	X_13656452_SNP [dm3] X_13762419_SNP [dm6]	C	A	2.573e^-4	1	UPSTREAM rdgB DOWNSTREAM Yp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2R	7392514	2R_7392514_SNP [dm3] 2R_11505009_SNP [dm6]	T	C	2.575e^-4	1	INTRON inv
X	22076525	X_22076525_SNP [dm3] X_22674689_SNP [dm6]	C	G	2.580e^-4	1	INTRON CR44997
X	12845227	X_12845227_SNP [dm3] X_12951194_SNP [dm6]	G	T	2.581e^-4	1	UTR_3_PRIME hec DOWNSTREAM fne
X	19726949	X_19726949_SNP [dm3] X_19832916_SNP [dm6]	A	T	2.582e^-4	1	UTR_3_PRIME pico
3R	14079773	3R_14079773_SNP [dm3] 3R_18254051_SNP [dm6]	A	G	2.583e^-4	1	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
3R	16890787	3R_16890787_SNP [dm3] 3R_21065065_SNP [dm6]	C	T	2.598e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
2L	7536173	2L_7536173_SNP [dm3] 2L_7536173_SNP [dm6]	T	C	2.601e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	7536177	2L_7536177_SNP [dm3] 2L_7536177_SNP [dm6]	G	A	2.601e^-4	1	INTRON RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	15043475	3L_15043475_INS [dm3] 3L_15050375_INS [dm6]	A	AG	2.608e^-4	1	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
2R	9970709	2R_9970709_SNP [dm3] 2R_14083204_SNP [dm6]	G	C	2.608e^-4	1	INTRON Prosap
2R	10926232	2R_10926232_SNP [dm3] 2R_15038727_SNP [dm6]	G	A	2.609e^-4	1	NON_SYNONYMOUS_CODING hbs
3L	18252601	3L_18252601_SNP [dm3] 3L_18259501_SNP [dm6]	T	C	2.640e^-4	1	INTERGENIC
3R	20681103	3R_20681103_SNP [dm3] 3R_24855381_SNP [dm6]	G	T	2.642e^-4	1	NON_SYNONYMOUS_CODING HdacX DOWNSTREAM nct
3R	4261680	3R_4261680_SNP [dm3] 3R_8435958_SNP [dm6]	C	G	2.647e^-4	1	INTRON CG45263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7722478	3L_7722478_SNP [dm3] 3L_7729378_SNP [dm6]	G	A	2.651e^-4	1	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	7392574	2R_7392574_SNP [dm3] 2R_11505069_SNP [dm6]	A	T	2.662e^-4	1	INTRON inv
3R	21345636	3R_21345636_SNP [dm3] 3R_25519914_SNP [dm6]	A	T	2.674e^-4	1	INTRON msi
2L	11093900	2L_11093900_SNP [dm3] 2L_11093900_SNP [dm6]	G	A	2.675e^-4	1	SYNONYMOUS_CODING CG4705	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18543969	2R_18543969_SNP [dm3] 2R_22656464_SNP [dm6]	G	A	2.677e^-4	1	SPLICE_SITE_REGION CG43326 & 1 other SYNONYMOUS_CODING CG43325 START_GAINED CG43326 UTR_5_PRIME CG43326 UPSTREAM CG43326 EXON CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15923628	2L_15923628_SNP [dm3] 2L_15923628_SNP [dm6]	A	T	2.682e^-4	1	INTRON beat-Ib & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14081436	3R_14081436_SNP [dm3] 3R_18255714_SNP [dm6]	C	T	2.689e^-4	1	SYNONYMOUS_CODING moi UTR_5_PRIME Tgs1 UPSTREAM Rpb4 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	20759308	3L_20759308_SNP [dm3] 3L_20766208_SNP [dm6]	T	C	2.700e^-4	1	INTERGENIC
3R	26079489	3R_26079489_SNP [dm3] 3R_30253767_SNP [dm6]	A	T	2.702e^-4	1	DOWNSTREAM CG9682 INTRON CG18404
3L	7861473	3L_7861473_SNP [dm3] 3L_7868373_SNP [dm6]	T	G	2.703e^-4	1	UPSTREAM CG32365 INTERGENIC
3R	18142656	3R_18142656_SNP [dm3] 3R_22316934_SNP [dm6]	A	G	2.704e^-4	1	INTRON CG34377
2R	4199856	2R_4199856_DEL [dm3] 2R_8312351_DEL [dm6]	AATA	A	2.707e^-4	1	DOWNSTREAM CR44450 INTERGENIC
X	5057492	X_5057492_DEL [dm3] X_5163459_DEL [dm6]	TATTGC	T	2.710e^-4	1	INTRON rg & 1 other
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	2.712e^-4	1	INTRON Pkc53E
X	16848545	X_16848545_DEL [dm3] X_16954512_DEL [dm6]	AAAA	A	2.712e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	2.713e^-4	1	INTRON Ncc69
3R	22147072	3R_22147072_SNP [dm3] 3R_26321350_SNP [dm6]	A	T	2.733e^-4	1	INTRON CG33970	TF binding site mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_zfh1
3R	24354944	3R_24354944_SNP [dm3] 3R_28529222_SNP [dm6]	A	T	2.734e^-4	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13140526	2L_13140526_SNP [dm3] 2L_13140526_SNP [dm6]	A	G	2.754e^-4	1	INTERGENIC
3L	15428999	3L_15428999_SNP [dm3] 3L_15435899_SNP [dm6]	C	A	2.755e^-4	1	INTERGENIC
3L	9658848	3L_9658848_SNP [dm3] 3L_9665748_SNP [dm6]	T	C	2.769e^-4	1	INTRON fry
2L	7743123	2L_7743123_SNP [dm3] 2L_7743123_SNP [dm6]	C	T	2.772e^-4	1	DOWNSTREAM CG7214 INTERGENIC
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	2.773e^-4	1	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15701737	3L_15701737_SNP [dm3] 3L_15708637_SNP [dm6]	T	C	2.788e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	19278570	2R_19278570_SNP [dm3] 2R_23391047_SNP [dm6]	G	A	2.803e^-4	1	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4646686	X_4646686_SNP [dm3] X_4752653_SNP [dm6]	T	C	2.804e^-4	1	INTERGENIC
3L	11414632	3L_11414632_SNP [dm3] 3L_11421532_SNP [dm6]	A	C	2.809e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19278549	2R_19278549_SNP [dm3] 2R_23391026_SNP [dm6]	G	A	2.815e^-4	1	SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22227371	3R_22227371_SNP [dm3] 3R_26401649_SNP [dm6]	G	A	2.815e^-4	1	DOWNSTREAM ppk15 INTERGENIC
3R	24352716	3R_24352716_SNP [dm3] 3R_28526994_SNP [dm6]	C	G	2.817e^-4	1	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20682878	3R_20682878_SNP [dm3] 3R_24857156_SNP [dm6]	G	C	2.818e^-4	1	SYNONYMOUS_CODING CG10899 UPSTREAM HdacX DOWNSTREAM ppk22
2R	19645317	2R_19645317_SNP [dm3] 2R_23757794_SNP [dm6]	A	G	2.818e^-4	1	SYNONYMOUS_CODING CG9850
2L	7595494	2L_7595494_SNP [dm3] 2L_7595494_SNP [dm6]	G	A	2.819e^-4	1	INTERGENIC
2R	1506136	2R_1506136_SNP [dm3] 2R_5618631_SNP [dm6]	C	A	2.821e^-4	1	INTERGENIC	transposable element FlyBase
X	19702893	X_19702893_SNP [dm3] X_19808860_SNP [dm6]	A	C	2.824e^-4	1	INTERGENIC
2R	18039551	2R_18039551_SNP [dm3] 2R_22152046_SNP [dm6]	G	T	2.825e^-4	1	INTRON a
2L	8964887	2L_8964887_SNP [dm3] 2L_8964887_SNP [dm6]	A	G	2.827e^-4	1	UPSTREAM CG32984 DOWNSTREAM CG32985 INTERGENIC
2R	3281852	2R_3281852_SNP [dm3] 2R_7394347_SNP [dm6]	C	A	2.835e^-4	1	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
3R	21345692	3R_21345692_SNP [dm3] 3R_25519970_SNP [dm6]	A	T	2.835e^-4	1	INTRON msi
2L	13766765	2L_13766765_SNP [dm3] 2L_13766765_SNP [dm6]	G	C	2.848e^-4	1	INTRON TM9SF4
2R	19502752	2R_19502752_SNP [dm3] 2R_23615229_SNP [dm6]	T	A	2.849e^-4	1	UPSTREAM CG4019 INTRON CG17664	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run
2R	6586463	2R_6586463_SNP [dm3] 2R_10698958_SNP [dm6]	G	A	2.852e^-4	1	INTRON stan
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	2.855e^-4	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7012275	2L_7012275_SNP [dm3] 2L_7012275_SNP [dm6]	A	T	2.856e^-4	1	UTR_5_PRIME CG43321	TF binding site BDTNP1_TFBS_dl
X	20563794	X_20563794_SNP [dm3] X_20692767_SNP [dm6]	A	G	2.859e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	24352835	3R_24352835_SNP [dm3] 3R_28527113_SNP [dm6]	A	G	2.864e^-4	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo
X	3861062	X_3861062_SNP [dm3] X_3967029_SNP [dm6]	T	C	2.865e^-4	1	SYNONYMOUS_CODING CG6428
3R	14080173	3R_14080173_SNP [dm3] 3R_18254451_SNP [dm6]	A	G	2.869e^-4	1	NON_SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
3L	11798043	3L_11798043_SNP [dm3] 3L_11804943_SNP [dm6]	A	G	2.871e^-4	1	SYNONYMOUS_CODING CG42255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	4208263	2L_4208263_INS [dm3] 2L_4208263_INS [dm6]	T	TCAG	2.875e^-4	1	INTRON ft	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13894150	3R_13894150_SNP [dm3] 3R_18068428_SNP [dm6]	G	A	2.879e^-4	1	INTERGENIC
3L	13372763	3L_13372763_SNP [dm3] 3L_13379663_SNP [dm6]	A	C	2.894e^-4	1	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	2.900e^-4	1	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	6448446	2R_6448446_SNP [dm3] 2R_10560941_SNP [dm6]	G	A	2.901e^-4	1	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	16890396	3R_16890396_SNP [dm3] 3R_21064674_SNP [dm6]	A	G	2.903e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	1094294	2L_1094294_SNP [dm3] 2L_1094294_SNP [dm6]	T	C	2.908e^-4	1	INTRON CG4629
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	2.923e^-4	1	INTRON fas
2L	8071926	2L_8071926_SNP [dm3] 2L_8071926_SNP [dm6]	T	A	2.925e^-4	1	UTR_3_PRIME MED20 UPSTREAM poe & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	5216176	2R_5216176_SNP [dm3] 2R_9328671_SNP [dm6]	C	T	2.926e^-4	1	INTRON CG13954 & 1 other
2R	19962112	2R_19962112_SNP [dm3] 2R_24074589_SNP [dm6]	G	C	2.927e^-4	1	UPSTREAM Mlp60A INTERGENIC
2L	16578277	2L_16578277_SNP [dm3] 2L_16578277_SNP [dm6]	T	C	2.943e^-4	1	INTRON CG42389
2L	2445336	2L_2445336_SNP [dm3] 2L_2445336_SNP [dm6]	G	A	2.943e^-4	1	INTRON dpp	enhancer FlyBase regulatory region REDfly_CRMs
2R	8922095	2R_8922095_INS [dm3] 2R_13034590_INS [dm6]	A	AGCG	2.946e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17290224	3L_17290224_DEL [dm3] 3L_17297124_DEL [dm6]	CC	C	2.949e^-4	1	INTERGENIC
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	2.974e^-4	1	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
2R	16985973	2R_16985973_SNP [dm3] 2R_21098468_SNP [dm6]	G	A	2.980e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	21876295	3R_21876295_SNP [dm3] 3R_26050573_SNP [dm6]	T	C	2.981e^-4	1	SYNONYMOUS_CODING Exo84 DOWNSTREAM gro	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12189822	2L_12189822_SNP [dm3] 2L_12189822_SNP [dm6]	C	G	2.984e^-4	1	INTRON aret
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	2.988e^-4	1	INTRON CG34114
2R	3633100	2R_3633100_SNP [dm3] 2R_7745595_SNP [dm6]	A	C	2.992e^-4	1	UPSTREAM CG30497 & 1 other INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2L	781017	2L_781017_SNP [dm3] 2L_781017_SNP [dm6]	T	C	2.992e^-4	1	UTR_5_PRIME Gr21a UPSTREAM Gr21a	TF binding site mE1_TFBS_chinmo
X	2998646	X_2998646_SNP [dm3] X_3104613_SNP [dm6]	C	T	2.994e^-4	1	INTRON kirre
2L	7198490	2L_7198490_SNP [dm3] 2L_7198490_SNP [dm6]	C	T	2.994e^-4	1	INTRON CG4502
2R	17338416	2R_17338416_SNP [dm3] 2R_21450911_SNP [dm6]	C	T	3.004e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20868911	X_20868911_SNP [dm3] X_20997884_SNP [dm6]	G	T	3.006e^-4	1	INTERGENIC
2R	16538402	2R_16538402_SNP [dm3] 2R_20650897_SNP [dm6]	A	G	3.008e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	11535453	2L_11535453_DEL [dm3] 2L_11535453_DEL [dm6]	TT	T	3.008e^-4	1	UPSTREAM CR42743 & 1 other INTERGENIC
3L	13372806	3L_13372806_SNP [dm3] 3L_13379706_SNP [dm6]	A	C	3.021e^-4	1	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23204759	3R_23204759_SNP [dm3] 3R_27379037_SNP [dm6]	A	T	3.023e^-4	1	UTR_3_PRIME side INTRON side
2L	8967918	2L_8967918_SNP [dm3] 2L_8967918_SNP [dm6]	G	A	3.026e^-4	1	NON_SYNONYMOUS_CODING CG18088 DOWNSTREAM CG32984
2R	12039763	2R_12039763_SNP [dm3] 2R_16152258_SNP [dm6]	G	A	3.030e^-4	1	INTRON lbk	transposable element FlyBase
3R	24334705	3R_24334705_SNP [dm3] 3R_28508983_SNP [dm6]	G	A	3.034e^-4	1	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15968569	3R_15968569_SNP [dm3] 3R_20142847_SNP [dm6]	C	T	3.037e^-4	1	INTERGENIC
3R	26036488	3R_26036488_SNP [dm3] 3R_30210766_SNP [dm6]	C	G	3.043e^-4	1	UPSTREAM CecA1 & 1 other DOWNSTREAM Anp INTERGENIC	regulatory region REDfly_CRMs
2L	12321185	2L_12321185_SNP [dm3] 2L_12321185_SNP [dm6]	G	T	3.045e^-4	1	INTERGENIC
X	10051818	X_10051818_SNP [dm3] X_10157785_SNP [dm6]	A	C	3.045e^-4	1	UPSTREAM CG43902 INTRON CR44894
3R	25903012	3R_25903012_SNP [dm3] 3R_30077290_SNP [dm6]	G	C	3.055e^-4	1	INTRON sima	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	6938113	3L_6938113_SNP [dm3] 3L_6945013_SNP [dm6]	T	A	3.063e^-4	1	INTRON tow	TF binding site mE1_TFBS_Kr
3L	9947631	3L_9947631_SNP [dm3] 3L_9954531_SNP [dm6]	T	C	3.065e^-4	1	INTRON CG34356
3R	14700044	3R_14700044_DEL [dm3] 3R_18874322_DEL [dm6]	CGT	C	3.068e^-4	1	INTERGENIC
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	3.068e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8922235	2R_8922235_SNP [dm3] 2R_13034730_SNP [dm6]	G	A	3.073e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12906088	2L_12906088_SNP [dm3] 2L_12906088_SNP [dm6]	A	C	3.077e^-4	1	INTERGENIC
3R	26852403	3R_26852403_SNP [dm3] 3R_31026681_SNP [dm6]	A	T	3.078e^-4	1	INTERGENIC
2L	19460810	2L_19460810_SNP [dm3] 2L_19460810_SNP [dm6]	G	C	3.078e^-4	1	INTERGENIC
3L	11700370	3L_11700370_SNP [dm3] 3L_11707270_SNP [dm6]	T	A	3.087e^-4	1	INTRON CG11658	TF binding site mE1_TFBS_cad
X	17356854	X_17356854_SNP [dm3] X_17462821_SNP [dm6]	A	C	3.089e^-4	1	INTRON CG43658
X	16972194	X_16972194_DEL [dm3] X_17078161_DEL [dm6]	TTTT	T	3.090e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	14229226	3R_14229226_SNP [dm3] 3R_18403504_SNP [dm6]	T	C	3.119e^-4	1	UTR_5_PRIME koko UPSTREAM CG12333 INTRON koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	7392459	2R_7392459_SNP [dm3] 2R_11504954_SNP [dm6]	T	C	3.124e^-4	1	INTRON inv
2R	8922093	2R_8922093_SNP [dm3] 2R_13034588_SNP [dm6]	A	G	3.141e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20006038	X_20006038_SNP [dm3] X_20112005_SNP [dm6]	C	T	3.141e^-4	1	INTERGENIC
X	14065969	X_14065969_SNP [dm3] X_14171936_SNP [dm6]	G	A	3.145e^-4	1	NON_SYNONYMOUS_CODING betaNACtes1 DOWNSTREAM CG12480
X	19726924	X_19726924_INS [dm3] X_19832891_INS [dm6]	G	GG	3.160e^-4	1	UTR_3_PRIME pico
3R	14081201	3R_14081201_SNP [dm3] 3R_18255479_SNP [dm6]	T	A	3.168e^-4	1	START_GAINED Ada2a & 1 other UTR_5_PRIME Ada2a & 1 other UPSTREAM moi & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9679860	3L_9679860_SNP [dm3] 3L_9686760_SNP [dm6]	T	C	3.170e^-4	1	DOWNSTREAM CG16719 INTRON CG6767
2L	7088173	2L_7088173_SNP [dm3] 2L_7088173_SNP [dm6]	A	G	3.170e^-4	1	INTERGENIC
X	3861092	X_3861092_SNP [dm3] X_3967059_SNP [dm6]	T	C	3.180e^-4	1	SYNONYMOUS_CODING CG6428
X	8069082	X_8069082_SNP [dm3] X_8175049_SNP [dm6]	T	C	3.189e^-4	1	INTRON slpr
2L	21763437	2L_21763437_INS [dm3] 2L_21763437_INS [dm6]	A	ATTAATTATTATTAT...	3.192e^-4	1	INTRON CG31612
2L	13824910	2L_13824910_SNP [dm3] 2L_13824910_SNP [dm6]	G	C	3.194e^-4	1	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16208480	2L_16208480_SNP [dm3] 2L_16208480_SNP [dm6]	T	G	3.198e^-4	1	INTERGENIC
2L	13917896	2L_13917896_SNP [dm3] 2L_13917896_SNP [dm6]	T	C	3.211e^-4	1	INTRON Ance-3
2R	1437389	2R_1437389_SNP [dm3] 2R_5549884_SNP [dm6]	A	G	3.214e^-4	1	DOWNSTREAM CG30438 INTERGENIC
2L	7417384	2L_7417384_SNP [dm3] 2L_7417384_SNP [dm6]	C	T	3.223e^-4	1	SYNONYMOUS_CODING chm	TF binding site BDTNP1_TFBS_dl
2L	13703817	2L_13703817_SNP [dm3] 2L_13703817_SNP [dm6]	A	G	3.229e^-4	1	INTRON CG31814
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	3.247e^-4	1	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12571249	2L_12571249_SNP [dm3] 2L_12571249_SNP [dm6]	C	T	3.248e^-4	1	UPSTREAM CR44598 EXON CR44597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8713016	2L_8713016_SNP [dm3] 2L_8713016_SNP [dm6]	A	T	3.254e^-4	1	SYNONYMOUS_CODING raw
2R	11361352	2R_11361352_SNP [dm3] 2R_15473847_SNP [dm6]	A	G	3.256e^-4	1	INTRON CG8180	TF binding site mE1_TFBS_chinmo
2L	6581670	2L_6581670_SNP [dm3] 2L_6581670_SNP [dm6]	T	A	3.259e^-4	1	INTRON CG11319
X	8242116	X_8242116_DEL [dm3] X_8348083_DEL [dm6]	AGGGGGA	A	3.261e^-4	1	INTRON nAChRalpha3
2L	780276	2L_780276_SNP [dm3] 2L_780276_SNP [dm6]	C	T	3.261e^-4	1	UPSTREAM Gr21a DOWNSTREAM CG13947 INTERGENIC
2R	4405229	2R_4405229_SNP [dm3] 2R_8517724_SNP [dm6]	A	T	3.264e^-4	1	INTRON mtt
X	17017301	X_17017301_SNP [dm3] X_17123268_SNP [dm6]	G	A	3.267e^-4	1	INTRON CG5004	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	16428005	X_16428005_SNP [dm3] X_16533972_SNP [dm6]	C	T	3.283e^-4	1	UPSTREAM para INTERGENIC
2L	8082110	2L_8082110_SNP [dm3] 2L_8082110_SNP [dm6]	T	C	3.287e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	2566553	X_2566553_INS [dm3] X_2672520_INS [dm6]	G	GCTTG	3.288e^-4	1	INTRON sgg
3L	10182815	3L_10182815_SNP [dm3] 3L_10189715_SNP [dm6]	C	A	3.292e^-4	1	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3R	15166237	3R_15166237_SNP [dm3] 3R_19340515_SNP [dm6]	C	T	3.295e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	14080866	3R_14080866_SNP [dm3] 3R_18255144_SNP [dm6]	T	C	3.295e^-4	1	NON_SYNONYMOUS_CODING Ada2a UPSTREAM moi & 1 other INTRON Rpb4	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3598903	3L_3598903_SNP [dm3] 3L_3598903_SNP [dm6]	A	T	3.304e^-4	1	INTRON Eip63E
2L	10420837	2L_10420837_SNP [dm3] 2L_10420837_SNP [dm6]	C	T	3.310e^-4	1	SYNONYMOUS_CODING pie DOWNSTREAM RfC3
2L	10586732	2L_10586732_SNP [dm3] 2L_10586732_SNP [dm6]	G	A	3.316e^-4	1	INTRON Trim9	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17149265	3R_17149265_SNP [dm3] 3R_21323543_SNP [dm6]	G	A	3.318e^-4	1	INTRON CG16791	TF binding site mE1_TFBS_cad
3R	9969241	3R_9969241_SNP [dm3] 3R_14143519_SNP [dm6]	T	C	3.321e^-4	1	INTERGENIC
2R	8922251	2R_8922251_SNP [dm3] 2R_13034746_SNP [dm6]	T	A	3.330e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12849024	3L_12849024_SNP [dm3] 3L_12855924_SNP [dm6]	C	T	3.331e^-4	1	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12058827	3L_12058827_SNP [dm3] 3L_12065727_SNP [dm6]	G	T	3.332e^-4	1	UPSTREAM rols INTERGENIC
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	3.341e^-4	1	INTRON CG34362
3R	19974699	3R_19974699_SNP [dm3] 3R_24148977_SNP [dm6]	A	G	3.351e^-4	1	UPSTREAM Slimp DOWNSTREAM p38c INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7988129	2L_7988129_SNP [dm3] 2L_7988129_SNP [dm6]	A	G	3.352e^-4	1	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad
3R	23204806	3R_23204806_SNP [dm3] 3R_27379084_SNP [dm6]	C	G	3.357e^-4	1	UTR_3_PRIME side INTRON side
2R	18033646	2R_18033646_SNP [dm3] 2R_22146141_SNP [dm6]	C	T	3.362e^-4	1	INTRON a
2R	3632204	2R_3632204_SNP [dm3] 2R_7744699_SNP [dm6]	C	T	3.367e^-4	1	INTRON CG30497 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2060689	2L_2060689_SNP [dm3] 2L_2060689_SNP [dm6]	C	G	3.375e^-4	1	INTRON dpr3
2L	13763347	2L_13763347_SNP [dm3] 2L_13763347_SNP [dm6]	C	T	3.383e^-4	1	INTRON TM9SF4
3L	11841981	3L_11841981_SNP [dm3] 3L_11848881_SNP [dm6]	G	C	3.387e^-4	1	INTERGENIC
2L	13154370	2L_13154370_SNP [dm3] 2L_13154370_SNP [dm6]	A	T	3.401e^-4	1	INTERGENIC
2L	17457895	2L_17457895_SNP [dm3] 2L_17457895_SNP [dm6]	T	A	3.408e^-4	1	NON_SYNONYMOUS_CODING CG18563 INTRON CG5050
X	2346929	X_2346929_DEL [dm3] X_2452896_DEL [dm6]	TCTT	T	3.408e^-4	1	INTRON boi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12306887	2L_12306887_DEL [dm3] 2L_12306887_DEL [dm6]	TAATTAT	T	3.426e^-4	1	INTRON aret
2R	10223841	2R_10223841_DEL [dm3] 2R_14336336_DEL [dm6]	TACTT	T	3.433e^-4	1	INTRON Shroom
2R	5591657	2R_5591657_SNP [dm3] 2R_9704152_SNP [dm6]	C	T	3.436e^-4	1	UPSTREAM CG30002 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2832881	2L_2832881_SNP [dm3] 2L_2832881_SNP [dm6]	C	T	3.442e^-4	1	INTERGENIC
2R	9484121	2R_9484121_SNP [dm3] 2R_13596616_SNP [dm6]	G	A	3.443e^-4	1	UPSTREAM S-Lap5 DOWNSTREAM CG6197 INTERGENIC	TF binding site mE1_TFBS_cad
3R	6876102	3R_6876102_SNP [dm3] 3R_11050380_SNP [dm6]	A	T	3.444e^-4	1	DOWNSTREAM CG34114 INTERGENIC
2L	22077405	2L_22077405_SNP [dm3] 2L_22077405_SNP [dm6]	A	G	3.460e^-4	1	INTERGENIC
3R	6991476	3R_6991476_SNP [dm3] 3R_11165754_SNP [dm6]	G	T	3.472e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3L	7695325	3L_7695325_SNP [dm3] 3L_7702225_SNP [dm6]	T	A	3.474e^-4	1	INTRON CG32373 & 1 other
X	16848533	X_16848533_SNP [dm3] X_16954500_SNP [dm6]	T	A	3.481e^-4	1	INTRON RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5045284	X_5045284_SNP [dm3] X_5151251_SNP [dm6]	C	A	3.506e^-4	1	INTRON rg & 1 other
3R	26120114	3R_26120114_SNP [dm3] 3R_30294392_SNP [dm6]	T	A	3.518e^-4	1	INTRON hdc
2L	2846513	2L_2846513_SNP [dm3] 2L_2846513_SNP [dm6]	A	T	3.537e^-4	1	SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
3R	26316081	3R_26316081_SNP [dm3] 3R_30490359_SNP [dm6]	T	G	3.545e^-4	1	DOWNSTREAM Jon99Fi INTRON PH4alphaSG2
2R	18673838	2R_18673838_SNP [dm3] 2R_22786333_SNP [dm6]	G	T	3.548e^-4	1	INTRON CG42260
2R	16951571	2R_16951571_SNP [dm3] 2R_21064066_SNP [dm6]	A	G	3.557e^-4	1	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	1565960	2R_1565960_SNP [dm3] 2R_5678455_SNP [dm6]	T	C	3.558e^-4	1	INTRON scaf
2R	17338403	2R_17338403_SNP [dm3] 2R_21450898_SNP [dm6]	T	C	3.561e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11700348	3L_11700348_SNP [dm3] 3L_11707248_SNP [dm6]	A	T	3.567e^-4	1	INTRON CG11658	TF binding site mE1_TFBS_cad
3L	18213404	3L_18213404_SNP [dm3] 3L_18220304_SNP [dm6]	T	C	3.591e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_zfh1
3L	13040774	3L_13040774_SNP [dm3] 3L_13047674_SNP [dm6]	T	C	3.595e^-4	1	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7722633	3L_7722633_SNP [dm3] 3L_7729533_SNP [dm6]	G	A	3.599e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	17356800	X_17356800_SNP [dm3] X_17462767_SNP [dm6]	C	T	3.612e^-4	1	INTRON CG43658
2R	17670215	2R_17670215_SNP [dm3] 2R_21782710_SNP [dm6]	A	T	3.613e^-4	1	INTERGENIC
3R	19327471	3R_19327471_SNP [dm3] 3R_23501749_SNP [dm6]	G	T	3.623e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12039758	2R_12039758_SNP [dm3] 2R_16152253_SNP [dm6]	A	T	3.625e^-4	1	INTRON lbk	transposable element FlyBase
2R	9311747	2R_9311747_SNP [dm3] 2R_13424242_SNP [dm6]	T	C	3.627e^-4	1	UTR_5_PRIME CG42321 UPSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA
3L	9691514	3L_9691514_SNP [dm3] 3L_9698414_SNP [dm6]	A	T	3.632e^-4	1	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	6409335	3R_6409335_DEL [dm3] 3R_10583613_DEL [dm6]	AGGAATTAACTA...	A	3.651e^-4	1	UTR_3_PRIME hth INTRON hth
X	21923850	X_21923850_SNP [dm3] X_22522014_SNP [dm6]	A	G	3.655e^-4	1	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3L	9054132	3L_9054132_SNP [dm3] 3L_9061032_SNP [dm6]	T	C	3.681e^-4	1	INTRON Argk
3L	15227390	3L_15227390_SNP [dm3] 3L_15234290_SNP [dm6]	C	T	3.682e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	18033575	2R_18033575_SNP [dm3] 2R_22146070_SNP [dm6]	G	A	3.688e^-4	1	INTRON a
2L	17424746	2L_17424746_SNP [dm3] 2L_17424746_SNP [dm6]	G	A	3.689e^-4	1	INTRON Dif
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	3.691e^-4	1	UPSTREAM dnc INTRON dnc
3R	20670573	3R_20670573_SNP [dm3] 3R_24844851_SNP [dm6]	C	A	3.692e^-4	1	INTRON Esp
3L	2662300	3L_2662300_SNP [dm3] 3L_2662300_SNP [dm6]	C	T	3.698e^-4	1	DOWNSTREAM CG33233 INTRON Fife & 1 other
2L	18286980	2L_18286980_SNP [dm3] 2L_18286980_SNP [dm6]	T	G	3.700e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1705417	2L_1705417_SNP [dm3] 2L_1705417_SNP [dm6]	C	T	3.702e^-4	1	SYNONYMOUS_CODING cpb DOWNSTREAM chinmo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17590772	3L_17590772_SNP [dm3] 3L_17597672_SNP [dm6]	C	A	3.704e^-4	1	NON_SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	11292861	2R_11292861_SNP [dm3] 2R_15405356_SNP [dm6]	C	A	3.716e^-4	1	DOWNSTREAM CR45020 INTRON CG43729
2L	10827161	2L_10827161_SNP [dm3] 2L_10827161_SNP [dm6]	C	T	3.717e^-4	1	UPSTREAM Nos INTRON Nos
2L	10068517	2L_10068517_SNP [dm3] 2L_10068517_SNP [dm6]	T	A	3.722e^-4	1	INTRON CG44153
2R	6586562	2R_6586562_SNP [dm3] 2R_10699057_SNP [dm6]	T	C	3.726e^-4	1	INTRON stan
2R	16133755	2R_16133755_SNP [dm3] 2R_20246250_SNP [dm6]	C	A	3.728e^-4	1	SPLICE_SITE_REGION ppk6 UPSTREAM CG11208 INTRON ppk6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	18421591	2R_18421591_DEL [dm3] 2R_22534086_DEL [dm6]	TAGAGAAGCTTT...	T	3.740e^-4	1	INTRON px
X	15028156	X_15028156_SNP [dm3] X_15134123_SNP [dm6]	C	G	3.742e^-4	1	INTRON drd
3R	16033899	3R_16033899_SNP [dm3] 3R_20208177_SNP [dm6]	C	A	3.752e^-4	1	DOWNSTREAM CG17199 INTRON Nlg4
3R	6991475	3R_6991475_SNP [dm3] 3R_11165753_SNP [dm6]	T	G	3.758e^-4	1	NON_SYNONYMOUS_CODING Ugt86Dg DOWNSTREAM Ugt86De
3L	9658759	3L_9658759_SNP [dm3] 3L_9665659_SNP [dm6]	A	G	3.766e^-4	1	SYNONYMOUS_CODING fry INTRON fry
3R	14079777	3R_14079777_SNP [dm3] 3R_18254055_SNP [dm6]	G	T	3.769e^-4	1	SYNONYMOUS_CODING Ada2a INTRON Rpb4	TF binding site mE1_TFBS_sens
2R	1146369	2R_1146369_SNP [dm3] 2R_5258864_SNP [dm6]	A	G	3.774e^-4	1	UPSTREAM d4 INTERGENIC	transposable element FlyBase
3R	5607387	3R_5607387_SNP [dm3] 3R_9781665_SNP [dm6]	T	A	3.782e^-4	1	INTRON CG12947 EXON CR31514	TF binding site mE1_TFBS_chinmo
3L	9932862	3L_9932862_SNP [dm3] 3L_9939762_SNP [dm6]	C	T	3.788e^-4	1	INTRON CG34356
2L	6854019	2L_6854019_SNP [dm3] 2L_6854019_SNP [dm6]	G	T	3.798e^-4	1	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19973964	3R_19973964_SNP [dm3] 3R_24148242_SNP [dm6]	G	A	3.801e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	506971	2L_506971_SNP [dm3] 2L_506971_SNP [dm6]	C	T	3.811e^-4	1	INTRON ush
3R	21345676	3R_21345676_SNP [dm3] 3R_25519954_SNP [dm6]	T	A	3.811e^-4	1	INTRON msi
2L	7769235	2L_7769235_SNP [dm3] 2L_7769235_SNP [dm6]	A	G	3.816e^-4	1	INTRON CG7191
3L	9684026	3L_9684026_SNP [dm3] 3L_9690926_SNP [dm6]	A	G	3.818e^-4	1	INTRON CG6767
3L	4687428	3L_4687428_SNP [dm3] 3L_4687428_SNP [dm6]	A	C	3.824e^-4	1	UPSTREAM axo DOWNSTREAM CG7514 INTERGENIC
2L	1947694	2L_1947694_SNP [dm3] 2L_1947694_SNP [dm6]	T	A	3.826e^-4	1	UPSTREAM CG33673 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10456258	2L_10456258_SNP [dm3] 2L_10456258_SNP [dm6]	T	C	3.828e^-4	1	UPSTREAM CG5322 INTRON CG5322
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	3.836e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	1885844	2L_1885844_SNP [dm3] 2L_1885844_SNP [dm6]	C	T	3.841e^-4	1	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	9991560	2L_9991560_SNP [dm3] 2L_9991560_SNP [dm6]	C	T	3.845e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1957972	2L_1957972_SNP [dm3] 2L_1957972_SNP [dm6]	G	A	3.847e^-4	1	INTRON erm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
X	3861056	X_3861056_SNP [dm3] X_3967023_SNP [dm6]	G	T	3.850e^-4	1	SYNONYMOUS_CODING CG6428
2R	12039778	2R_12039778_SNP [dm3] 2R_16152273_SNP [dm6]	A	T	3.868e^-4	1	INTRON lbk	transposable element FlyBase
X	5319912	X_5319912_SNP [dm3] X_5425879_SNP [dm6]	T	C	3.869e^-4	1	SYNONYMOUS_CODING CG4165	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5870652	2L_5870652_SNP [dm3] 2L_5870652_SNP [dm6]	T	C	3.871e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19465874	3R_19465874_SNP [dm3] 3R_23640152_SNP [dm6]	A	G	3.878e^-4	1	INTRON CG31145	TF binding site mE1_TFBS_inv
3L	7141877	3L_7141877_SNP [dm3] 3L_7148777_SNP [dm6]	G	A	3.887e^-4	1	INTRON corn	TF binding site mE1_TFBS_cad
3R	22125750	3R_22125750_SNP [dm3] 3R_26300028_SNP [dm6]	C	T	3.898e^-4	1	INTERGENIC
3L	677735	3L_677735_SNP [dm3] 3L_677735_SNP [dm6]	T	C	3.905e^-4	1	DOWNSTREAM CG17129 INTERGENIC
3R	22530297	3R_22530297_SNP [dm3] 3R_26704575_SNP [dm6]	A	G	3.916e^-4	1	INTRON amon
2R	12291285	2R_12291285_SNP [dm3] 2R_16403780_SNP [dm6]	T	C	3.933e^-4	1	INTRON Sema-2b
3R	23867969	3R_23867969_SNP [dm3] 3R_28042247_SNP [dm6]	G	C	3.933e^-4	1	INTRON CG34362
3L	12058933	3L_12058933_SNP [dm3] 3L_12065833_SNP [dm6]	T	A	3.934e^-4	1	UPSTREAM rols INTERGENIC
2L	19434656	2L_19434656_SNP [dm3] 2L_19434656_SNP [dm6]	C	T	3.936e^-4	1	INTRON Rab9	TF binding site mE1_TFBS_cad
2R	9970703	2R_9970703_SNP [dm3] 2R_14083198_SNP [dm6]	C	T	3.940e^-4	1	INTRON Prosap
X	6213947	X_6213947_SNP [dm3] X_6319914_SNP [dm6]	C	G	3.949e^-4	1	INTRON CG15894
2R	18066390	2R_18066390_SNP [dm3] 2R_22178885_SNP [dm6]	A	G	3.951e^-4	1	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
X	16855733	X_16855733_SNP [dm3] X_16961700_SNP [dm6]	G	T	3.958e^-4	1	INTRON CG9086	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15621829	3R_15621829_SNP [dm3] 3R_19796107_SNP [dm6]	T	A	3.975e^-4	1	INTRON bnl
3L	1584266	3L_1584266_SNP [dm3] 3L_1584266_SNP [dm6]	G	C	3.975e^-4	1	INTRON CG13917	TF binding site mE1_TFBS_HSA
3R	18443288	3R_18443288_SNP [dm3] 3R_22617566_SNP [dm6]	G	A	3.977e^-4	1	SYNONYMOUS_CODING CG31161 UPSTREAM mRpL45 DOWNSTREAM EF-G2	TF binding site mE1_TFBS_sens
2R	8551005	2R_8551005_INS [dm3] 2R_12663500_INS [dm6]	T	GAACCTA	3.978e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
2L	13913634	2L_13913634_SNP [dm3] 2L_13913634_SNP [dm6]	G	A	3.991e^-4	1	DOWNSTREAM Acyp INTERGENIC	TF binding site mE1_TFBS_cad
2L	2059782	2L_2059782_SNP [dm3] 2L_2059782_SNP [dm6]	C	G	3.997e^-4	1	UTR_3_PRIME dpr3
X	12874651	X_12874651_SNP [dm3] X_12980618_SNP [dm6]	T	G	4.006e^-4	1	INTERGENIC
2R	9859376	2R_9859376_SNP [dm3] 2R_13971871_SNP [dm6]	C	T	4.011e^-4	1	SYNONYMOUS_CODING CG18568 UPSTREAM St4
2R	18071244	2R_18071244_SNP [dm3] 2R_22183739_SNP [dm6]	A	T	4.013e^-4	1	NON_SYNONYMOUS_CODING MED16 UPSTREAM CG11170	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	19277830	2R_19277830_SNP [dm3] 2R_23390307_SNP [dm6]	G	T	4.024e^-4	1	SPLICE_SITE_REGION CG3530 SYNONYMOUS_CODING CG3530	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7985122	2L_7985122_SNP [dm3] 2L_7985122_SNP [dm6]	G	C	4.026e^-4	1	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	4.027e^-4	1	INTRON fas
3L	1939425	3L_1939425_SNP [dm3] 3L_1939425_SNP [dm6]	C	T	4.030e^-4	1	UPSTREAM CG5687 EXON CR44536
X	18414702	X_18414702_SNP [dm3] X_18520669_SNP [dm6]	A	T	4.046e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
3R	25341797	3R_25341797_SNP [dm3] 3R_29516075_SNP [dm6]	C	T	4.049e^-4	1	SYNONYMOUS_CODING CG2014	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4672372	2L_4672372_SNP [dm3] 2L_4672372_SNP [dm6]	T	A	4.049e^-4	1	INTERGENIC
X	9414967	X_9414967_SNP [dm3] X_9520934_SNP [dm6]	C	T	4.050e^-4	1	INTRON CG32700
3R	14080065	3R_14080065_SNP [dm3] 3R_18254343_SNP [dm6]	T	C	4.082e^-4	1	INTRON Rpb4 & 1 other	TF binding site mE1_TFBS_sens
3R	18162612	3R_18162612_SNP [dm3] 3R_22336890_SNP [dm6]	C	A	4.084e^-4	1	DOWNSTREAM CG5388 INTRON CG5388
2L	13315972	2L_13315972_SNP [dm3] 2L_13315972_SNP [dm6]	C	G	4.085e^-4	1	INTRON CG43778
2L	21847677	2L_21847677_SNP [dm3] 2L_21847677_SNP [dm6]	C	T	4.089e^-4	1	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9055396	3L_9055396_SNP [dm3] 3L_9062296_SNP [dm6]	C	G	4.090e^-4	1	SYNONYMOUS_CODING Argk UTR_5_PRIME Argk INTRON Argk
2R	16951559	2R_16951559_SNP [dm3] 2R_21064054_SNP [dm6]	A	C	4.102e^-4	1	NON_SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht8
2R	17348585	2R_17348585_DEL [dm3] 2R_21461080_DEL [dm6]	AA	A	4.105e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_twi
3R	16890133	3R_16890133_SNP [dm3] 3R_21064411_SNP [dm6]	C	T	4.108e^-4	1	UTR_5_PRIME Cortactin UPSTREAM AnxB9 INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5867586	2L_5867586_SNP [dm3] 2L_5867586_SNP [dm6]	C	T	4.124e^-4	1	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2385842	X_2385842_SNP [dm3] X_2491809_SNP [dm6]	T	G	4.128e^-4	1	INTRON trol	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	1073058	3L_1073058_SNP [dm3] 3L_1073058_SNP [dm6]	G	A	4.129e^-4	1	INTRON bab1
X	19443805	X_19443805_SNP [dm3] X_19549772_SNP [dm6]	G	A	4.130e^-4	1	INTERGENIC
2R	14537615	2R_14537615_SNP [dm3] 2R_18650110_SNP [dm6]	G	T	4.139e^-4	1	INTRON SP2637
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	4.140e^-4	1	INTERGENIC
2R	16191243	2R_16191243_SNP [dm3] 2R_20303738_SNP [dm6]	A	G	4.140e^-4	1	DOWNSTREAM CR44640 & 2 others INTERGENIC
3R	23417726	3R_23417726_SNP [dm3] 3R_27592004_SNP [dm6]	A	C	4.141e^-4	1	INTRON CG5639
3L	18882511	3L_18882511_SNP [dm3] 3L_18889411_SNP [dm6]	G	A	4.156e^-4	1	INTRON CG3961
2L	6309366	2L_6309366_SNP [dm3] 2L_6309366_SNP [dm6]	G	T	4.156e^-4	1	UTR_3_PRIME CG13984 UPSTREAM CG43922 INTRON Ddr	TF binding site mE1_TFBS_cad
2L	4424763	2L_4424763_SNP [dm3] 2L_4424763_SNP [dm6]	G	A	4.159e^-4	1	INTRON CG15431
X	8875168	X_8875168_SNP [dm3] X_8981135_SNP [dm6]	C	T	4.172e^-4	1	INTRON rdgA & 1 other
2R	18540092	2R_18540092_SNP [dm3] 2R_22652587_SNP [dm6]	T	G	4.173e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	18540095	2R_18540095_DEL [dm3] 2R_22652590_DEL [dm6]	TCA	T	4.173e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	10255162	2R_10255162_SNP [dm3] 2R_14367657_SNP [dm6]	A	G	4.176e^-4	1	UPSTREAM CG34443 DOWNSTREAM CG34184 INTRON CG34442
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	4.186e^-4	1	INTRON CG9850
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	4.201e^-4	1	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
2L	10937352	2L_10937352_SNP [dm3] 2L_10937352_SNP [dm6]	G	A	4.212e^-4	1	UTR_5_PRIME CG14072 UPSTREAM CG14072 INTRON dpr2
2L	8691500	2L_8691500_SNP [dm3] 2L_8691500_SNP [dm6]	G	T	4.212e^-4	1	UPSTREAM Hnf4 INTRON Hnf4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	15156112	3R_15156112_DEL [dm3] 3R_19330390_DEL [dm6]	GAGTAGC	A	4.223e^-4	1	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27118394	3R_27118394_SNP [dm3] 3R_31292672_SNP [dm6]	G	C	4.224e^-4	1	INTERGENIC
3L	13372801	3L_13372801_SNP [dm3] 3L_13379701_SNP [dm6]	C	T	4.233e^-4	1	DOWNSTREAM SNCF & 1 other INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4624631	2L_4624631_SNP [dm3] 2L_4624631_SNP [dm6]	C	G	4.246e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18293828	2L_18293828_INS [dm3] 2L_18293828_INS [dm6]	A	AA	4.254e^-4	1	DOWNSTREAM Sfp36F EXON CR43358
2R	7126244	2R_7126244_SNP [dm3] 2R_11238739_SNP [dm6]	C	T	4.255e^-4	1	SYNONYMOUS_CODING CG13216 DOWNSTREAM CG13215	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
4	456128	4_456128_SNP [dm3] 4_435502_SNP [dm6]	A	G	4.259e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8798718	3L_8798718_SNP [dm3] 3L_8805618_SNP [dm6]	C	T	4.260e^-4	1	DOWNSTREAM CG13312 INTRON CG34427	TF binding site mE1_TFBS_chinmo
X	4989929	X_4989929_SNP [dm3] X_5095896_SNP [dm6]	A	G	4.260e^-4	1	INTRON rg & 1 other
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	4.262e^-4	1	INTRON trol
3R	15166754	3R_15166754_SNP [dm3] 3R_19341032_SNP [dm6]	C	T	4.265e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3895277	2R_3895277_DEL [dm3] 2R_8007772_DEL [dm6]	CCATGTAC	C	4.265e^-4	1	INTRON Odc2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13926849	3R_13926849_SNP [dm3] 3R_18101127_SNP [dm6]	G	A	4.272e^-4	1	INTRON sr
2L	840916	2L_840916_INS [dm3] 2L_840916_INS [dm6]	A	AA	4.288e^-4	1	INTRON drongo
3R	20673939	3R_20673939_SNP [dm3] 3R_24848217_SNP [dm6]	A	T	4.293e^-4	1	NON_SYNONYMOUS_CODING Esp SPLICE_SITE_REGION Esp
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	4.307e^-4	1	UPSTREAM CG33225 INTERGENIC
3R	16407134	3R_16407134_SNP [dm3] 3R_20581412_SNP [dm6]	A	G	4.313e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407141	3R_16407141_SNP [dm3] 3R_20581419_SNP [dm6]	G	T	4.313e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407146	3R_16407146_SNP [dm3] 3R_20581424_SNP [dm6]	G	C	4.313e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	4.313e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
2L	8530374	2L_8530374_SNP [dm3] 2L_8530374_SNP [dm6]	T	C	4.322e^-4	1	INTRON CG17834	TF binding site mE1_TFBS_HSA
2R	12419991	2R_12419991_SNP [dm3] 2R_16532486_SNP [dm6]	A	G	4.334e^-4	1	UTR_3_PRIME Sema-2a
3L	15301641	3L_15301641_SNP [dm3] 3L_15308541_SNP [dm6]	C	A	4.337e^-4	1	INTRON CG7255
2R	11467748	2R_11467748_SNP [dm3] 2R_15580243_SNP [dm6]	A	G	4.340e^-4	1	INTERGENIC
2L	11244367	2L_11244367_SNP [dm3] 2L_11244367_SNP [dm6]	T	A	4.344e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11244375	2L_11244375_SNP [dm3] 2L_11244375_SNP [dm6]	A	C	4.344e^-4	1	INTRON ab	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8082112	2L_8082112_SNP [dm3] 2L_8082112_SNP [dm6]	G	A	4.346e^-4	1	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	16786743	2R_16786743_SNP [dm3] 2R_20899238_SNP [dm6]	T	C	4.355e^-4	1	DOWNSTREAM CR43160 INTRON otp	regulatory region REDfly_CRMs
2L	2515452	2L_2515452_SNP [dm3] 2L_2515452_SNP [dm6]	A	T	4.374e^-4	1	INTERGENIC
2L	11231768	2L_11231768_SNP [dm3] 2L_11231768_SNP [dm6]	T	C	4.380e^-4	1	INTRON ab
X	17956050	X_17956050_SNP [dm3] X_18062017_SNP [dm6]	C	G	4.392e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	16761375	X_16761375_SNP [dm3] X_16867342_SNP [dm6]	G	A	4.393e^-4	1	INTRON CG13003
2L	19818724	2L_19818724_SNP [dm3] 2L_19818724_SNP [dm6]	G	T	4.394e^-4	1	INTRON sick
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	4.396e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	4.396e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1589014	3L_1589014_SNP [dm3] 3L_1589014_SNP [dm6]	A	T	4.401e^-4	1	INTRON CG13917
2L	12874276	2L_12874276_SNP [dm3] 2L_12874276_SNP [dm6]	C	A	4.408e^-4	1	INTERGENIC
2L	14012018	2L_14012018_INS [dm3] 2L_14012018_INS [dm6]	A	AA	4.417e^-4	1	UPSTREAM bgm INTERGENIC
2R	10926273	2R_10926273_SNP [dm3] 2R_15038768_SNP [dm6]	G	A	4.420e^-4	1	SYNONYMOUS_CODING hbs
3R	21692538	3R_21692538_SNP [dm3] 3R_25866816_SNP [dm6]	G	A	4.428e^-4	1	UPSTREAM CG5890 INTRON CG5890
X	16972204	X_16972204_SNP [dm3] X_17078171_SNP [dm6]	A	G	4.429e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
X	16972215	X_16972215_INS [dm3] X_17078182_INS [dm6]	T	TATGCATT	4.429e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	18144077	3R_18144077_SNP [dm3] 3R_22318355_SNP [dm6]	G	A	4.432e^-4	1	SYNONYMOUS_CODING CG34377	TF binding site mE1_TFBS_chinmo
2L	18151360	2L_18151360_SNP [dm3] 2L_18151360_SNP [dm6]	T	C	4.432e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2L	8690270	2L_8690270_DEL [dm3] 2L_8690270_DEL [dm6]	TAAAAGT	T	4.444e^-4	1	INTRON Hnf4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2R	8922177	2R_8922177_SNP [dm3] 2R_13034672_SNP [dm6]	G	C	4.445e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	4.445e^-4	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
2R	16329169	2R_16329169_SNP [dm3] 2R_20441664_SNP [dm6]	T	A	4.455e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2L	18152675	2L_18152675_SNP [dm3] 2L_18152675_SNP [dm6]	T	C	4.456e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
2L	10856497	2L_10856497_SNP [dm3] 2L_10856497_SNP [dm6]	C	T	4.456e^-4	1	UTR_5_PRIME Dnz1 DOWNSTREAM ial	TF binding site mE1_TFBS_cad
2R	8551008	2R_8551008_SNP [dm3] 2R_12663503_SNP [dm6]	T	C	4.457e^-4	1	UPSTREAM nemy INTRON nemy	TF binding site mE1_TFBS_cad
3L	12058816	3L_12058816_SNP [dm3] 3L_12065716_SNP [dm6]	A	T	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058819	3L_12058819_SNP [dm3] 3L_12065719_SNP [dm6]	T	A	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058834	3L_12058834_SNP [dm3] 3L_12065734_SNP [dm6]	G	A	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058842	3L_12058842_INS [dm3] 3L_12065742_INS [dm6]	A	AA	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058928	3L_12058928_SNP [dm3] 3L_12065828_SNP [dm6]	T	A	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058939	3L_12058939_SNP [dm3] 3L_12065839_SNP [dm6]	C	T	4.467e^-4	1	UPSTREAM rols INTERGENIC
3L	12058948	3L_12058948_SNP [dm3] 3L_12065848_SNP [dm6]	G	A	4.467e^-4	1	UPSTREAM rols INTERGENIC
2L	7988252	2L_7988252_SNP [dm3] 2L_7988252_SNP [dm6]	A	T	4.476e^-4	1	SYNONYMOUS_CODING pes	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6588389	2R_6588389_SNP [dm3] 2R_10700884_SNP [dm6]	T	C	4.483e^-4	1	INTRON stan
3L	7860206	3L_7860206_SNP [dm3] 3L_7867106_SNP [dm6]	A	T	4.487e^-4	1	INTRON Pdp1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25295758	3R_25295758_SNP [dm3] 3R_29470036_SNP [dm6]	A	T	4.502e^-4	1	INTRON Ptp99A
X	2386476	X_2386476_SNP [dm3] X_2492443_SNP [dm6]	C	G	4.509e^-4	1	INTRON trol
3R	23976300	3R_23976300_SNP [dm3] 3R_28150578_SNP [dm6]	A	T	4.509e^-4	1	INTRON CG34354
3L	10640765	3L_10640765_SNP [dm3] 3L_10647665_SNP [dm6]	G	A	4.511e^-4	1	INTRON CG32066
3R	15634363	3R_15634363_SNP [dm3] 3R_19808641_SNP [dm6]	G	A	4.512e^-4	1	INTRON bnl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9446178	2L_9446178_SNP [dm3] 2L_9446178_SNP [dm6]	G	C	4.520e^-4	1	INTRON numb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6525758	X_6525758_DEL [dm3] X_6631725_DEL [dm6]	TAT	T	4.524e^-4	1	INTRON pigs	TF binding site mE1_TFBS_HSA
3R	10271552	3R_10271552_SNP [dm3] 3R_14445830_SNP [dm6]	G	A	4.527e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12090511	2R_12090511_INS [dm3] 2R_16203006_INS [dm6]	G	CA	4.560e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2R	3281880	2R_3281880_SNP [dm3] 2R_7394375_SNP [dm6]	G	A	4.569e^-4	1	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
2R	4629530	2R_4629530_SNP [dm3] 2R_8742025_SNP [dm6]	C	A	4.571e^-4	1	INTRON CG8740
X	2386428	X_2386428_SNP [dm3] X_2492395_SNP [dm6]	C	A	4.580e^-4	1	SYNONYMOUS_CODING trol
3L	7893963	3L_7893963_SNP [dm3] 3L_7900863_SNP [dm6]	C	T	4.589e^-4	1	SYNONYMOUS_CODING pbl INTRON pbl
2L	2846493	2L_2846493_SNP [dm3] 2L_2846493_SNP [dm6]	C	A	4.590e^-4	1	NON_SYNONYMOUS_CODING CG3117 UPSTREAM CG18557
X	4840888	X_4840888_SNP [dm3] X_4946855_SNP [dm6]	A	C	4.596e^-4	1	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	9019587	2L_9019587_SNP [dm3] 2L_9019587_SNP [dm6]	A	T	4.610e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8922092	2R_8922092_SNP [dm3] 2R_13034587_SNP [dm6]	C	T	4.614e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	9019572	2L_9019572_SNP [dm3] 2L_9019572_SNP [dm6]	T	A	4.616e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19689514	3R_19689514_SNP [dm3] 3R_23863792_SNP [dm6]	C	T	4.623e^-4	1	INTRON Pli	TF binding site BDTNP1_TFBS_twi
3L	5593884	3L_5593884_SNP [dm3] 3L_5600784_SNP [dm6]	A	G	4.629e^-4	1	DOWNSTREAM CG10590 INTERGENIC
X	9449377	X_9449377_SNP [dm3] X_9555344_SNP [dm6]	C	T	4.630e^-4	1	UTR_3_PRIME RpS28b DOWNSTREAM CG15317 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7064890	2L_7064890_SNP [dm3] 2L_7064890_SNP [dm6]	C	T	4.631e^-4	1	SYNONYMOUS_CODING Nuf2 DOWNSTREAM Sem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	16889961	3R_16889961_SNP [dm3] 3R_21064239_SNP [dm6]	A	G	4.633e^-4	1	INTRON Cortactin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7413297	2R_7413297_SNP [dm3] 2R_11525792_SNP [dm6]	T	A	4.637e^-4	1	INTRON en	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13343954	2L_13343954_SNP [dm3] 2L_13343954_SNP [dm6]	G	T	4.637e^-4	1	INTERGENIC
X	19779148	X_19779148_SNP [dm3] X_19885115_SNP [dm6]	C	G	4.639e^-4	1	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	10256346	2R_10256346_SNP [dm3] 2R_14368841_SNP [dm6]	C	T	4.670e^-4	1	UPSTREAM CG34444 DOWNSTREAM CG34442 INTRON CG34443
3L	18879899	3L_18879899_SNP [dm3] 3L_18886799_SNP [dm6]	A	T	4.679e^-4	1	INTRON CG3961	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	10035790	3R_10035790_SNP [dm3] 3R_14210068_SNP [dm6]	A	C	4.683e^-4	1	INTRON Dop1R1
X	3171080	X_3171080_SNP [dm3] X_3277047_SNP [dm6]	T	C	4.687e^-4	1	INTRON dnc
X	17166930	X_17166930_SNP [dm3] X_17272897_SNP [dm6]	G	A	4.700e^-4	1	SYNONYMOUS_CODING f	TF binding site mE1_TFBS_cad
2L	18423949	2L_18423949_SNP [dm3] 2L_18423949_SNP [dm6]	G	A	4.703e^-4	1	INTERGENIC
2L	2069373	2L_2069373_SNP [dm3] 2L_2069373_SNP [dm6]	A	C	4.705e^-4	1	INTRON dpr3
X	19782474	X_19782474_SNP [dm3] X_19888441_SNP [dm6]	C	T	4.709e^-4	1	UTR_5_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17755325	2R_17755325_SNP [dm3] 2R_21867820_SNP [dm6]	G	A	4.714e^-4	1	UPSTREAM comr INTERGENIC
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	4.715e^-4	1	INTRON CG13917
2R	3189164	2R_3189164_SNP [dm3] 2R_7301659_SNP [dm6]	C	T	4.716e^-4	1	DOWNSTREAM pwn INTERGENIC
2R	20168423	2R_20168423_SNP [dm3] 2R_24280900_SNP [dm6]	T	C	4.723e^-4	1	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24355040	3R_24355040_SNP [dm3] 3R_28529318_SNP [dm6]	A	T	4.731e^-4	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3762534	2L_3762534_SNP [dm3] 2L_3762534_SNP [dm6]	T	G	4.758e^-4	1	SYNONYMOUS_CODING CG43707	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22215088	3R_22215088_SNP [dm3] 3R_26389366_SNP [dm6]	C	T	4.773e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	15949291	2L_15949291_SNP [dm3] 2L_15949291_SNP [dm6]	T	C	4.781e^-4	1	INTRON beat-Ib
2R	13253731	2R_13253731_SNP [dm3] 2R_17366226_SNP [dm6]	C	A	4.785e^-4	1	DOWNSTREAM mbl INTRON mbl
3L	9657652	3L_9657652_SNP [dm3] 3L_9664552_SNP [dm6]	T	C	4.789e^-4	1	INTRON fry
3R	17197123	3R_17197123_SNP [dm3] 3R_21371401_SNP [dm6]	G	A	4.795e^-4	1	UTR_3_PRIME mod_mdg4_ DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3L	12138718	3L_12138718_SNP [dm3] 3L_12145618_SNP [dm6]	T	C	4.802e^-4	1	UPSTREAM Nrx-IV INTRON CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	12138738	3L_12138738_DEL [dm3] 3L_12145638_DEL [dm6]	AAATGTAG	A	4.802e^-4	1	UPSTREAM Nrx-IV INTRON CG5642	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	7813071	2R_7813071_SNP [dm3] 2R_11925566_SNP [dm6]	G	T	4.809e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	4.814e^-4	1	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
2L	7196069	2L_7196069_SNP [dm3] 2L_7196069_SNP [dm6]	A	C	4.818e^-4	1	INTRON CG4502
2L	4015863	2L_4015863_DEL [dm3] 2L_4015863_DEL [dm6]	CA	C	4.818e^-4	1	INTERGENIC
2L	4843728	2L_4843728_SNP [dm3] 2L_4843728_SNP [dm6]	T	C	4.822e^-4	1	SYNONYMOUS_CODING mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	4.826e^-4	1	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	8935771	2R_8935771_SNP [dm3] 2R_13048266_SNP [dm6]	T	C	4.839e^-4	1	DOWNSTREAM CG13324 INTERGENIC
3R	15754290	3R_15754290_SNP [dm3] 3R_19928568_SNP [dm6]	T	A	4.840e^-4	1	NON_SYNONYMOUS_CODING CG4459 DOWNSTREAM Hs6st	TF binding site mE1_TFBS_cad
2L	3215286	2L_3215286_SNP [dm3] 2L_3215286_SNP [dm6]	T	C	4.844e^-4	1	INTERGENIC
3R	10035925	3R_10035925_SNP [dm3] 3R_14210203_SNP [dm6]	C	T	4.845e^-4	1	INTRON Dop1R1
2L	8972265	2L_8972265_SNP [dm3] 2L_8972265_SNP [dm6]	C	A	4.847e^-4	1	SYNONYMOUS_CODING CG9541
2L	18290344	2L_18290344_SNP [dm3] 2L_18290344_SNP [dm6]	A	G	4.850e^-4	1	DOWNSTREAM CR44696 & 1 other INTERGENIC
2R	19388304	2R_19388304_SNP [dm3] 2R_23500781_SNP [dm6]	C	A	4.854e^-4	1	DOWNSTREAM CG13558 INTERGENIC
2L	6853914	2L_6853914_SNP [dm3] 2L_6853914_SNP [dm6]	T	C	4.854e^-4	1	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12522351	3L_12522351_DEL [dm3] 3L_12529251_DEL [dm6]	AAAA	G	4.859e^-4	1	SPLICE_SITE_REGION nst INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14789039	2R_14789039_SNP [dm3] 2R_18901534_SNP [dm6]	C	T	4.859e^-4	1	INTRON sano
3L	6941426	3L_6941426_SNP [dm3] 3L_6948326_SNP [dm6]	A	C	4.867e^-4	1	SYNONYMOUS_CODING tow
X	2998619	X_2998619_SNP [dm3] X_3104586_SNP [dm6]	C	G	4.871e^-4	1	INTRON kirre
2L	14562508	2L_14562508_SNP [dm3] 2L_14562508_SNP [dm6]	A	G	4.882e^-4	1	DOWNSTREAM CG3473 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	18414673	X_18414673_SNP [dm3] X_18520640_SNP [dm6]	A	C	4.893e^-4	1	DOWNSTREAM CG6481 & 1 other INTRON Bx
X	7943668	X_7943668_SNP [dm3] X_8049635_SNP [dm6]	G	A	4.899e^-4	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	5824647	2L_5824647_DEL [dm3] 2L_5824647_DEL [dm6]	AATCATTAAATGCA...	A	4.899e^-4	1	UTR_5_PRIME TrissinR UPSTREAM TrissinR
X	22074159	X_22074159_SNP [dm3] X_22672323_SNP [dm6]	A	T	4.899e^-4	1	INTRON CR44997	transposable element FlyBase
3L	14335728	3L_14335728_SNP [dm3] 3L_14342628_SNP [dm6]	C	G	4.901e^-4	1	INTRON fz
2L	6125762	2L_6125762_SNP [dm3] 2L_6125762_SNP [dm6]	G	A	4.901e^-4	1	DOWNSTREAM WDR79 INTRON Arpc4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	15965144	2L_15965144_SNP [dm3] 2L_15965144_SNP [dm6]	G	A	4.904e^-4	1	INTERGENIC
2R	10925555	2R_10925555_SNP [dm3] 2R_15038050_SNP [dm6]	C	G	4.905e^-4	1	NON_SYNONYMOUS_CODING hbs
X	8827294	X_8827294_SNP [dm3] X_8933261_SNP [dm6]	A	G	4.912e^-4	1	INTRON rdgA
2L	16735383	2L_16735383_SNP [dm3] 2L_16735383_SNP [dm6]	T	C	4.917e^-4	1	SYNONYMOUS_CODING glu
2L	4413397	2L_4413397_SNP [dm3] 2L_4413397_SNP [dm6]	A	G	4.927e^-4	1	INTRON CG15431
2L	13931020	2L_13931020_SNP [dm3] 2L_13931020_SNP [dm6]	T	C	4.930e^-4	1	SYNONYMOUS_CODING CG42711 INTRON Ance-3
3L	3136804	3L_3136804_SNP [dm3] 3L_3136804_SNP [dm6]	A	G	4.930e^-4	1	INTRON CG11537
3L	3136820	3L_3136820_SNP [dm3] 3L_3136820_SNP [dm6]	C	T	4.930e^-4	1	INTRON CG11537
X	2088714	X_2088714_DEL [dm3] X_2194681_DEL [dm6]	GGGAAAG	G	4.931e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	12155220	2L_12155220_SNP [dm3] 2L_12155220_SNP [dm6]	A	T	4.939e^-4	1	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15914361	2R_15914361_SNP [dm3] 2R_20026856_SNP [dm6]	C	T	4.943e^-4	1	INTERGENIC
3R	24354313	3R_24354313_SNP [dm3] 3R_28528591_SNP [dm6]	C	T	4.943e^-4	1	NON_SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7767806	2L_7767806_SNP [dm3] 2L_7767806_SNP [dm6]	A	G	4.944e^-4	1	INTRON CG7191
2R	7250374	2R_7250374_SNP [dm3] 2R_11362869_SNP [dm6]	A	C	4.948e^-4	1	DOWNSTREAM san INTRON Gr47b	TF binding site mE1_TFBS_sens
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	4.953e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11018016	X_11018016_SNP [dm3] X_11123983_SNP [dm6]	T	C	4.956e^-4	1	START_GAINED CG11122 UTR_5_PRIME CG11122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25915078	3R_25915078_SNP [dm3] 3R_30089356_SNP [dm6]	C	T	4.959e^-4	1	INTRON sima
2L	4244916	2L_4244916_SNP [dm3] 2L_4244916_SNP [dm6]	C	A	4.964e^-4	1	INTERGENIC
3L	18087169	3L_18087169_SNP [dm3] 3L_18094069_SNP [dm6]	A	G	4.967e^-4	1	INTRON CG13698
3L	14048096	3L_14048096_SNP [dm3] 3L_14054996_SNP [dm6]	A	G	4.990e^-4	1	INTRON CG32138	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	11771320	2L_11771320_SNP [dm3] 2L_11771320_SNP [dm6]	T	C	5.003e^-4	1	INTERGENIC
2L	4413400	2L_4413400_SNP [dm3] 2L_4413400_SNP [dm6]	A	T	5.008e^-4	1	INTRON CG15431
2L	14959561	2L_14959561_SNP [dm3] 2L_14959561_SNP [dm6]	C	G	5.023e^-4	1	INTRON CG42313
2R	18081607	2R_18081607_SNP [dm3] 2R_22194102_SNP [dm6]	A	G	5.025e^-4	1	UPSTREAM Swim INTRON Swim
X	10069111	X_10069111_SNP [dm3] X_10175078_SNP [dm6]	A	G	5.028e^-4	1	INTRON CG43902 & 1 other
2R	12090757	2R_12090757_SNP [dm3] 2R_16203252_SNP [dm6]	G	A	5.029e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	6175693	2L_6175693_SNP [dm3] 2L_6175693_SNP [dm6]	A	G	5.039e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19085335	2R_19085335_SNP [dm3] 2R_23197812_SNP [dm6]	G	C	5.042e^-4	1	INTRON CG34371
X	2996148	X_2996148_SNP [dm3] X_3102115_SNP [dm6]	C	A	5.050e^-4	1	INTRON kirre
3R	24330942	3R_24330942_SNP [dm3] 3R_28505220_SNP [dm6]	T	A	5.054e^-4	1	INTRON Dhc98D
2R	12833710	2R_12833710_SNP [dm3] 2R_16946205_SNP [dm6]	G	A	5.058e^-4	1	DOWNSTREAM CG34190 INTRON CG15614
2R	1566133	2R_1566133_SNP [dm3] 2R_5678628_SNP [dm6]	G	C	5.071e^-4	1	INTRON scaf	transposable element FlyBase
2R	18540101	2R_18540101_SNP [dm3] 2R_22652596_SNP [dm6]	A	T	5.075e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2L	4424756	2L_4424756_SNP [dm3] 2L_4424756_SNP [dm6]	C	A	5.077e^-4	1	INTRON CG15431
3R	18859874	3R_18859874_SNP [dm3] 3R_23034152_SNP [dm6]	G	A	5.086e^-4	1	INTRON CG13833
3R	22393235	3R_22393235_SNP [dm3] 3R_26567513_SNP [dm6]	G	A	5.089e^-4	1	SYNONYMOUS_CODING scrib	TF binding site mE1_TFBS_bab1
3L	7646760	3L_7646760_SNP [dm3] 3L_7653660_SNP [dm6]	C	T	5.091e^-4	1	SYNONYMOUS_CODING CG7492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	3861396	X_3861396_SNP [dm3] X_3967363_SNP [dm6]	A	T	5.097e^-4	1	INTRON CG6428
2L	7394687	2L_7394687_SNP [dm3] 2L_7394687_SNP [dm6]	C	T	5.099e^-4	1	INTRON CG5160
2L	19072315	2L_19072315_SNP [dm3] 2L_19072315_SNP [dm6]	G	A	5.099e^-4	1	INTRON CG17572
2L	8718404	2L_8718404_SNP [dm3] 2L_8718404_SNP [dm6]	C	T	5.100e^-4	1	INTRON raw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7721525	3L_7721525_SNP [dm3] 3L_7728425_SNP [dm6]	G	T	5.101e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	2996147	X_2996147_SNP [dm3] X_3102114_SNP [dm6]	A	C	5.111e^-4	1	INTRON kirre
3L	9058205	3L_9058205_SNP [dm3] 3L_9065105_SNP [dm6]	A	T	5.119e^-4	1	INTRON Argk	TF binding site mE1_TFBS_bab1
2L	4456741	2L_4456741_SNP [dm3] 2L_4456741_SNP [dm6]	T	C	5.125e^-4	1	UTR_5_PRIME Gs1l DOWNSTREAM RpL27A & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	5.133e^-4	1	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	1587821	3L_1587821_SNP [dm3] 3L_1587821_SNP [dm6]	G	T	5.144e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3R	19974330	3R_19974330_SNP [dm3] 3R_24148608_SNP [dm6]	G	A	5.149e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
2R	12090765	2R_12090765_DEL [dm3] 2R_16203260_DEL [dm6]	TGCATC	T	5.152e^-4	1	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
3R	25927653	3R_25927653_SNP [dm3] 3R_30101931_SNP [dm6]	T	A	5.153e^-4	1	INTRON sima
3L	8799241	3L_8799241_SNP [dm3] 3L_8806141_SNP [dm6]	G	A	5.157e^-4	1	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17308642	2L_17308642_SNP [dm3] 2L_17308642_SNP [dm6]	A	G	5.157e^-4	1	INTERGENIC
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	5.166e^-4	1	INTRON a
3R	24762630	3R_24762630_SNP [dm3] 3R_28936908_SNP [dm6]	C	G	5.172e^-4	1	INTRON CG14521
3R	20842907	3R_20842907_SNP [dm3] 3R_25017185_SNP [dm6]	A	G	5.179e^-4	1	SYNONYMOUS_CODING tnc
X	15892531	X_15892531_SNP [dm3] X_15998498_SNP [dm6]	C	T	5.189e^-4	1	SYNONYMOUS_CODING CG8939	TF binding site mE1_TFBS_sens
X	3184937	X_3184937_DEL [dm3] X_3290904_DEL [dm6]	AA	G	5.191e^-4	1	UPSTREAM dnc INTRON dnc
2R	7392547	2R_7392547_SNP [dm3] 2R_11505042_SNP [dm6]	T	G	5.204e^-4	1	INTRON inv
2R	15328077	2R_15328077_SNP [dm3] 2R_19440572_SNP [dm6]	T	G	5.208e^-4	1	SYNONYMOUS_CODING Spt5	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8326848	2R_8326848_SNP [dm3] 2R_12439343_SNP [dm6]	G	A	5.227e^-4	1	INTRON Dyb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1954616	2L_1954616_SNP [dm3] 2L_1954616_SNP [dm6]	G	A	5.234e^-4	1	UPSTREAM erm INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20564174	X_20564174_SNP [dm3] X_20693147_SNP [dm6]	A	G	5.244e^-4	1	INTRON run	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
X	7738236	X_7738236_SNP [dm3] X_7844203_SNP [dm6]	T	C	5.246e^-4	1	INTERGENIC
2R	15251873	2R_15251873_SNP [dm3] 2R_19364368_SNP [dm6]	A	G	5.261e^-4	1	SYNONYMOUS_CODING CG10051	TF binding site mE1_TFBS_cad
3L	3136815	3L_3136815_SNP [dm3] 3L_3136815_SNP [dm6]	A	T	5.263e^-4	1	INTRON CG11537
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	5.264e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16890695	3R_16890695_SNP [dm3] 3R_21064973_SNP [dm6]	T	C	5.275e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3R	16006328	3R_16006328_SNP [dm3] 3R_20180606_SNP [dm6]	A	G	5.276e^-4	1	INTERGENIC
3R	25111269	3R_25111269_SNP [dm3] 3R_29285547_SNP [dm6]	A	T	5.277e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	3281896	2R_3281896_SNP [dm3] 2R_7394391_SNP [dm6]	G	T	5.280e^-4	1	UPSTREAM CR44201 INTRON CG1707	transposable element FlyBase
3L	11523709	3L_11523709_SNP [dm3] 3L_11530609_SNP [dm6]	C	A	5.284e^-4	1	INTRON Mob2
3L	4702100	3L_4702100_SNP [dm3] 3L_4702100_SNP [dm6]	C	T	5.284e^-4	1	INTRON RhoGEF64C
3L	4702105	3L_4702105_SNP [dm3] 3L_4702105_SNP [dm6]	A	G	5.284e^-4	1	INTRON RhoGEF64C
2L	19317949	2L_19317949_SNP [dm3] 2L_19317949_SNP [dm6]	G	T	5.292e^-4	1	INTERGENIC
3R	15160639	3R_15160639_SNP [dm3] 3R_19334917_SNP [dm6]	T	A	5.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19974446	3R_19974446_SNP [dm3] 3R_24148724_SNP [dm6]	A	C	5.295e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	6853913	2L_6853913_SNP [dm3] 2L_6853913_SNP [dm6]	A	T	5.295e^-4	1	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9673433	3L_9673433_SNP [dm3] 3L_9680333_SNP [dm6]	C	T	5.297e^-4	1	SYNONYMOUS_CODING CG16717 UPSTREAM alphaTub67C	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20802214	2L_20802214_SNP [dm3] 2L_20802214_SNP [dm6]	T	C	5.307e^-4	1	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	15927274	2L_15927274_SNP [dm3] 2L_15927274_SNP [dm6]	A	G	5.314e^-4	1	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	7595398	2L_7595398_SNP [dm3] 2L_7595398_SNP [dm6]	T	A	5.329e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26954226	3R_26954226_SNP [dm3] 3R_31128504_SNP [dm6]	C	T	5.351e^-4	1	SYNONYMOUS_CODING CG15556
X	17956002	X_17956002_SNP [dm3] X_18061969_SNP [dm6]	C	G	5.356e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
X	17956020	X_17956020_SNP [dm3] X_18061987_SNP [dm6]	T	C	5.356e^-4	1	INTRON Sh	TF binding site BDTNP1_TFBS_twi
3R	22365651	3R_22365651_SNP [dm3] 3R_26539929_SNP [dm6]	G	A	5.359e^-4	1	INTRON scrib	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	4839904	X_4839904_INS [dm3] X_4945871_INS [dm6]	T	TTTTT	5.370e^-4	1	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15914407	2R_15914407_SNP [dm3] 2R_20026902_SNP [dm6]	T	C	5.371e^-4	1	INTERGENIC
3R	23478352	3R_23478352_SNP [dm3] 3R_27652630_SNP [dm6]	T	C	5.372e^-4	1	UPSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_bab1
3L	9332280	3L_9332280_SNP [dm3] 3L_9339180_SNP [dm6]	T	C	5.373e^-4	1	DOWNSTREAM PGRP-LA INTRON PGRP-LC
2R	15734934	2R_15734934_SNP [dm3] 2R_19847429_SNP [dm6]	T	G	5.374e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	9414923	X_9414923_SNP [dm3] X_9520890_SNP [dm6]	A	C	5.383e^-4	1	INTRON CG32700
3R	17755562	3R_17755562_SNP [dm3] 3R_21929840_SNP [dm6]	T	C	5.385e^-4	1	INTERGENIC
3L	17737149	3L_17737149_SNP [dm3] 3L_17744049_SNP [dm6]	C	G	5.387e^-4	1	INTRON Ccn	TF binding site BDTNP1_TFBS_twi
3R	16890210	3R_16890210_SNP [dm3] 3R_21064488_SNP [dm6]	G	A	5.388e^-4	1	UPSTREAM AnxB9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
X	5724765	X_5724765_SNP [dm3] X_5830732_SNP [dm6]	A	G	5.388e^-4	1	INTRON CG15765
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	5.389e^-4	1	INTRON rgn
2L	18131807	2L_18131807_SNP [dm3] 2L_18131807_SNP [dm6]	T	G	5.391e^-4	1	SYNONYMOUS_CODING kel UTR_3_PRIME kel
3L	18841288	3L_18841288_SNP [dm3] 3L_18848188_SNP [dm6]	A	G	5.407e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	4308579	3L_4308579_SNP [dm3] 3L_4308579_SNP [dm6]	A	T	5.407e^-4	1	UPSTREAM dyl INTERGENIC
X	20030360	X_20030360_SNP [dm3] X_20136327_SNP [dm6]	G	C	5.407e^-4	1	NON_SYNONYMOUS_CODING CG15322	TF binding site mE1_TFBS_chinmo
2L	7767774	2L_7767774_SNP [dm3] 2L_7767774_SNP [dm6]	C	T	5.409e^-4	1	INTRON CG7191
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	5.438e^-4	1	UTR_3_PRIME CG30289 UPSTREAM CG30288
X	13542255	X_13542255_DEL [dm3] X_13648222_DEL [dm6]	TG	T	5.443e^-4	1	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10236467	X_10236467_DEL [dm3] X_10342434_DEL [dm6]	TTCGAGA	T	5.453e^-4	1	INTRON CG43740
2R	11409462	2R_11409462_SNP [dm3] 2R_15521957_SNP [dm6]	G	A	5.457e^-4	1	INTRON Khc-73
2L	2846920	2L_2846920_DEL [dm3] 2L_2846920_DEL [dm6]	GACTCTT	G	5.469e^-4	1	CODON_DELETION CG3117 UPSTREAM CG2983
2L	10342291	2L_10342291_SNP [dm3] 2L_10342291_SNP [dm6]	A	T	5.473e^-4	1	SPLICE_SITE_REGION CG31715 SYNONYMOUS_CODING CG31715 UPSTREAM Sps2 DOWNSTREAM SamDC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2L	13329125	2L_13329125_SNP [dm3] 2L_13329125_SNP [dm6]	C	A	5.473e^-4	1	INTRON CG43778
X	16972229	X_16972229_SNP [dm3] X_17078196_SNP [dm6]	A	G	5.480e^-4	1	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_zfh1
3R	25906205	3R_25906205_SNP [dm3] 3R_30080483_SNP [dm6]	G	A	5.501e^-4	1	INTRON sima
3R	17684813	3R_17684813_SNP [dm3] 3R_21859091_SNP [dm6]	C	T	5.516e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1517452	2R_1517452_DEL [dm3] 2R_5629947_DEL [dm6]	GAAACTGTTGGGTCATGCAG...	G	5.530e^-4	1	INTERGENIC	transposable element FlyBase
3R	23796479	3R_23796479_SNP [dm3] 3R_27970757_SNP [dm6]	C	T	5.531e^-4	1	INTRON betaTub97EF
3R	16029360	3R_16029360_SNP [dm3] 3R_20203638_SNP [dm6]	G	A	5.534e^-4	1	INTERGENIC
X	3861424	X_3861424_INS [dm3] X_3967391_INS [dm6]	A	ACACA	5.536e^-4	1	SPLICE_SITE_REGION CG6428 INTRON CG6428
3R	25437389	3R_25437389_SNP [dm3] 3R_29611667_SNP [dm6]	T	G	5.547e^-4	1	INTRON alph
3L	8780313	3L_8780313_SNP [dm3] 3L_8787213_SNP [dm6]	C	T	5.556e^-4	1	NON_SYNONYMOUS_CODING Fhos DOWNSTREAM CG5804 INTRON Fhos	TF binding site BDTNP1_TFBS_dl
3L	4537343	3L_4537343_SNP [dm3] 3L_4537343_SNP [dm6]	T	G	5.559e^-4	1	NON_SYNONYMOUS_CODING CG11353
3R	17755608	3R_17755608_SNP [dm3] 3R_21929886_SNP [dm6]	A	C	5.560e^-4	1	INTERGENIC
2L	10368919	2L_10368919_SNP [dm3] 2L_10368919_SNP [dm6]	G	T	5.561e^-4	1	DOWNSTREAM CG5056 INTRON rho-5	TF binding site mE1_TFBS_cad
3L	8799242	3L_8799242_SNP [dm3] 3L_8806142_SNP [dm6]	T	C	5.562e^-4	1	NON_SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12155222	2L_12155222_SNP [dm3] 2L_12155222_SNP [dm6]	G	A	5.571e^-4	1	INTRON CG31760	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2433253	2L_2433253_SNP [dm3] 2L_2433253_SNP [dm6]	T	C	5.580e^-4	1	INTRON dpp
2L	20852790	2L_20852790_SNP [dm3] 2L_20852790_SNP [dm6]	C	T	5.580e^-4	1	SYNONYMOUS_CODING twit	TF binding site mE1_TFBS_cad
3R	15166341	3R_15166341_SNP [dm3] 3R_19340619_SNP [dm6]	A	G	5.585e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7274930	3L_7274930_SNP [dm3] 3L_7281830_SNP [dm6]	C	G	5.594e^-4	1	INTRON unc-13-4A
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	5.596e^-4	1	INTRON trol
3L	9696908	3L_9696908_SNP [dm3] 3L_9703808_SNP [dm6]	C	A	5.612e^-4	1	UPSTREAM CG16711 & 1 other INTERGENIC
2R	8922240	2R_8922240_SNP [dm3] 2R_13034735_SNP [dm6]	A	G	5.624e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17910166	3R_17910166_SNP [dm3] 3R_22084444_SNP [dm6]	T	A	5.626e^-4	1	DOWNSTREAM CG13408 & 1 other INTERGENIC
3L	9332338	3L_9332338_SNP [dm3] 3L_9339238_SNP [dm6]	G	A	5.634e^-4	1	DOWNSTREAM PGRP-LA INTRON PGRP-LC
3L	16329824	3L_16329824_SNP [dm3] 3L_16336724_SNP [dm6]	T	A	5.636e^-4	1	INTERGENIC
X	12814167	X_12814167_INS [dm3] X_12920134_INS [dm6]	C	CCTCCCCCCAC...	5.647e^-4	1	INTRON fne
2R	8922212	2R_8922212_SNP [dm3] 2R_13034707_SNP [dm6]	C	T	5.651e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22096050	3R_22096050_SNP [dm3] 3R_26270328_SNP [dm6]	G	T	5.670e^-4	1	INTRON CG6154
2R	10794243	2R_10794243_SNP [dm3] 2R_14906738_SNP [dm6]	A	G	5.672e^-4	1	UPSTREAM CG10249 INTRON CG10249
2R	10926231	2R_10926231_SNP [dm3] 2R_15038726_SNP [dm6]	T	C	5.676e^-4	1	SYNONYMOUS_CODING hbs
X	12614932	X_12614932_SNP [dm3] X_12720899_SNP [dm6]	C	T	5.676e^-4	1	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6854020	2L_6854020_SNP [dm3] 2L_6854020_SNP [dm6]	C	A	5.682e^-4	1	UPSTREAM l_2_k09022 DOWNSTREAM Rca1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25906252	3R_25906252_SNP [dm3] 3R_30080530_SNP [dm6]	C	T	5.694e^-4	1	INTRON sima
2R	7250361	2R_7250361_SNP [dm3] 2R_11362856_SNP [dm6]	T	A	5.703e^-4	1	DOWNSTREAM san INTRON Gr47b	TF binding site mE1_TFBS_sens
3R	21946932	3R_21946932_SNP [dm3] 3R_26121210_SNP [dm6]	G	A	5.705e^-4	1	INTRON CG31324

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.551e^-2)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01302

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_Mo	10.9652	0.0042

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1711 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	18885211	2R_18885211_SNP [dm3] 2R_22997688_SNP [dm6]	A	C	5.958e^-7	0.683	INTRON twi & 1 other
X	16559445	X_16559445_SNP [dm3] X_16665412_SNP [dm6]	A	T	2.433e^-6	0.683	UPSTREAM CG15865 INTRON r
2R	17042676	2R_17042676_SNP [dm3] 2R_21155171_SNP [dm6]	G	C	2.498e^-6	0.683	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16559450	X_16559450_SNP [dm3] X_16665417_SNP [dm6]	T	C	3.161e^-6	0.683	UPSTREAM CG15865 INTRON r
X	16559448	X_16559448_SNP [dm3] X_16665415_SNP [dm6]	T	A	3.279e^-6	0.683	UPSTREAM CG15865 INTRON r
2R	8438153	2R_8438153_SNP [dm3] 2R_12550648_SNP [dm6]	G	A	3.399e^-6	0.683	INTRON fra	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16559414	X_16559414_SNP [dm3] X_16665381_SNP [dm6]	C	T	3.907e^-6	0.683	UPSTREAM CG15865 INTRON r
X	16559459	X_16559459_SNP [dm3] X_16665426_SNP [dm6]	G	A	4.350e^-6	0.683	UPSTREAM CG15865 INTRON r
2R	9523811	2R_9523811_SNP [dm3] 2R_13636306_SNP [dm6]	G	A	4.524e^-6	0.683	INTRON fas
3L	13040774	3L_13040774_SNP [dm3] 3L_13047674_SNP [dm6]	T	C	4.569e^-6	0.683	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4484066	X_4484066_INS [dm3] X_4590033_INS [dm6]	A	AAA	4.718e^-6	0.683	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	5691071	3L_5691071_SNP [dm3] 3L_5697971_SNP [dm6]	T	C	4.884e^-6	0.683	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	20355730	2R_20355730_SNP [dm3] 2R_24468207_SNP [dm6]	C	T	5.106e^-6	0.683	INTRON CG13579
X	16559458	X_16559458_SNP [dm3] X_16665425_SNP [dm6]	C	A	5.800e^-6	0.683	UPSTREAM CG15865 INTRON r
X	16559447	X_16559447_SNP [dm3] X_16665414_SNP [dm6]	G	C	5.884e^-6	0.683	UPSTREAM CG15865 INTRON r
X	16559537	X_16559537_INS [dm3] X_16665504_INS [dm6]	A	AGA	6.230e^-6	0.683	INTRON r
3R	21099451	3R_21099451_SNP [dm3] 3R_25273729_SNP [dm6]	C	T	6.378e^-6	0.683	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3L	5752965	3L_5752965_SNP [dm3] 3L_5759865_SNP [dm6]	C	T	6.558e^-6	0.683	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17769771	2R_17769771_SNP [dm3] 2R_21882266_SNP [dm6]	T	C	7.599e^-6	0.738	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_sens
X	16559535	X_16559535_SNP [dm3] X_16665502_SNP [dm6]	A	T	7.961e^-6	0.738	INTRON r
X	4586105	X_4586105_SNP [dm3] X_4692072_SNP [dm6]	A	G	8.268e^-6	0.738	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	2379424	X_2379424_SNP [dm3] X_2485391_SNP [dm6]	T	A	9.482e^-6	0.808	INTRON trol
X	2380690	X_2380690_SNP [dm3] X_2486657_SNP [dm6]	G	A	1.040e^-5	0.812	INTRON trol
X	12156780	X_12156780_SNP [dm3] X_12262747_SNP [dm6]	C	T	1.040e^-5	0.812	INTRON Ten-a
2R	7200219	2R_7200219_SNP [dm3] 2R_11312714_SNP [dm6]	G	A	1.203e^-5	0.902	SYNONYMOUS_CODING nompA	TF binding site mE1_TFBS_cad
X	7943668	X_7943668_SNP [dm3] X_8049635_SNP [dm6]	G	A	1.426e^-5	1	UTR_3_PRIME fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3L	5691107	3L_5691107_SNP [dm3] 3L_5698007_SNP [dm6]	G	A	1.505e^-5	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9679860	3L_9679860_SNP [dm3] 3L_9686760_SNP [dm6]	T	C	1.544e^-5	1	DOWNSTREAM CG16719 INTRON CG6767
X	2088787	X_2088787_SNP [dm3] X_2194754_SNP [dm6]	G	A	1.676e^-5	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24938744	3R_24938744_SNP [dm3] 3R_29113022_SNP [dm6]	C	T	1.678e^-5	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17338355	2R_17338355_SNP [dm3] 2R_21450850_SNP [dm6]	A	T	1.735e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2899342	2L_2899342_SNP [dm3] 2L_2899342_SNP [dm6]	A	T	1.749e^-5	1	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	13832476	2L_13832476_SNP [dm3] 2L_13832476_SNP [dm6]	G	A	1.785e^-5	1	SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	4643969	2L_4643969_SNP [dm3] 2L_4643969_SNP [dm6]	A	T	1.879e^-5	1	NON_SYNONYMOUS_CODING CG15635
3L	9679873	3L_9679873_SNP [dm3] 3L_9686773_SNP [dm6]	T	A	2.046e^-5	1	DOWNSTREAM CG16719 INTRON CG6767
3R	24938524	3R_24938524_SNP [dm3] 3R_29112802_SNP [dm6]	C	T	2.179e^-5	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
X	4585949	X_4585949_SNP [dm3] X_4691916_SNP [dm6]	C	T	2.185e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	5440005	X_5440005_SNP [dm3] X_5545972_SNP [dm6]	G	A	2.330e^-5	1	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22094037	3R_22094037_SNP [dm3] 3R_26268315_SNP [dm6]	T	C	2.352e^-5	1	INTRON CG6154
3L	4579867	3L_4579867_DEL [dm3] 3L_4579867_DEL [dm6]	GATATTC	A	2.437e^-5	1	INTRON CG42540
3R	23338855	3R_23338855_SNP [dm3] 3R_27513133_SNP [dm6]	G	A	2.553e^-5	1	INTERGENIC
X	2380763	X_2380763_SNP [dm3] X_2486730_SNP [dm6]	A	C	2.645e^-5	1	INTRON trol
X	16108180	X_16108180_SNP [dm3] X_16214147_SNP [dm6]	T	A	2.788e^-5	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11523674	3L_11523674_SNP [dm3] 3L_11530574_SNP [dm6]	G	A	2.818e^-5	1	INTRON Mob2
2R	15903063	2R_15903063_SNP [dm3] 2R_20015558_SNP [dm6]	A	C	2.882e^-5	1	DOWNSTREAM CR44629 & 1 other INTERGENIC
2L	4891727	2L_4891727_SNP [dm3] 2L_4891727_SNP [dm6]	G	A	2.899e^-5	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4585905	X_4585905_DEL [dm3] X_4691872_DEL [dm6]	AATAT	C	2.920e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3L	18353698	3L_18353698_SNP [dm3] 3L_18360598_SNP [dm6]	G	C	2.925e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	13041033	3L_13041033_SNP [dm3] 3L_13047933_SNP [dm6]	A	G	2.930e^-5	1	UTR_3_PRIME CG11279 DOWNSTREAM CG11279
3L	1586236	3L_1586236_SNP [dm3] 3L_1586236_SNP [dm6]	A	T	2.984e^-5	1	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	22082470	3R_22082470_SNP [dm3] 3R_26256748_SNP [dm6]	T	G	2.994e^-5	1	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18887422	2R_18887422_SNP [dm3] 2R_22999899_SNP [dm6]	G	C	3.122e^-5	1	INTRON twi
X	3922668	X_3922668_SNP [dm3] X_4028635_SNP [dm6]	A	C	3.216e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16710183	X_16710183_SNP [dm3] X_16816150_SNP [dm6]	C	A	3.289e^-5	1	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	13832377	2L_13832377_SNP [dm3] 2L_13832377_SNP [dm6]	T	G	3.425e^-5	1	NON_SYNONYMOUS_CODING DNApol-gamma35 UTR_3_PRIME CG33649 UPSTREAM RpII33 DOWNSTREAM Orc5	TF binding site mE1_TFBS_sens
3L	1122497	3L_1122497_SNP [dm3] 3L_1122497_SNP [dm6]	G	T	3.426e^-5	1	INTERGENIC
3R	12725010	3R_12725010_SNP [dm3] 3R_16899288_SNP [dm6]	A	C	3.565e^-5	1	INTRON iab-8	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	3029583	3L_3029583_SNP [dm3] 3L_3029583_SNP [dm6]	C	G	3.800e^-5	1	INTERGENIC
3R	12723450	3R_12723450_SNP [dm3] 3R_16897728_SNP [dm6]	C	T	3.838e^-5	1	INTRON iab-8 EXON CR43617	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18353309	3L_18353309_SNP [dm3] 3L_18360209_SNP [dm6]	T	G	3.844e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3L	5690084	3L_5690084_SNP [dm3] 3L_5696984_SNP [dm6]	G	T	3.851e^-5	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18421669	2R_18421669_SNP [dm3] 2R_22534164_SNP [dm6]	C	T	3.926e^-5	1	INTRON px
3R	21099496	3R_21099496_SNP [dm3] 3R_25273774_SNP [dm6]	A	C	4.121e^-5	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	8494498	2L_8494498_DEL [dm3] 2L_8494498_DEL [dm6]	GG	G	4.133e^-5	1	DOWNSTREAM Bace INTRON Dh31
X	12156782	X_12156782_SNP [dm3] X_12262749_SNP [dm6]	C	T	4.213e^-5	1	INTRON Ten-a
2L	19359010	2L_19359010_SNP [dm3] 2L_19359010_SNP [dm6]	G	A	4.299e^-5	1	INTRON dnt	TF binding site mE1_TFBS_cad
3R	18341500	3R_18341500_SNP [dm3] 3R_22515778_SNP [dm6]	C	A	4.357e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
X	10693164	X_10693164_SNP [dm3] X_10799131_SNP [dm6]	A	G	4.423e^-5	1	INTRON Imp
X	4584663	X_4584663_SNP [dm3] X_4690630_SNP [dm6]	G	T	4.460e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4557679	X_4557679_SNP [dm3] X_4663646_SNP [dm6]	A	C	4.469e^-5	1	INTRON CG3009
2L	2833210	2L_2833210_SNP [dm3] 2L_2833210_SNP [dm6]	G	A	4.492e^-5	1	INTERGENIC
2L	17316656	2L_17316656_SNP [dm3] 2L_17316656_SNP [dm6]	A	G	4.496e^-5	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4891709	2L_4891709_SNP [dm3] 2L_4891709_SNP [dm6]	G	A	4.525e^-5	1	UPSTREAM CG3036 DOWNSTREAM CG15625 EXON CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22227453	3R_22227453_SNP [dm3] 3R_26401731_SNP [dm6]	A	T	4.547e^-5	1	DOWNSTREAM ppk15 INTERGENIC
3R	23480594	3R_23480594_SNP [dm3] 3R_27654872_SNP [dm6]	T	C	4.664e^-5	1	INTRON tau	TF binding site mE1_TFBS_inv
X	12156761	X_12156761_SNP [dm3] X_12262728_SNP [dm6]	A	G	4.695e^-5	1	INTRON Ten-a
X	10051818	X_10051818_SNP [dm3] X_10157785_SNP [dm6]	A	C	4.777e^-5	1	UPSTREAM CG43902 INTRON CR44894
2R	18421591	2R_18421591_DEL [dm3] 2R_22534086_DEL [dm6]	TAGAGAAGCTTT...	T	4.846e^-5	1	INTRON px
3L	4159506	3L_4159506_SNP [dm3] 3L_4159506_SNP [dm6]	T	A	4.884e^-5	1	INTRON nab	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	16331071	3L_16331071_SNP [dm3] 3L_16337971_SNP [dm6]	C	A	4.955e^-5	1	INTERGENIC
3R	22082647	3R_22082647_SNP [dm3] 3R_26256925_SNP [dm6]	G	A	4.955e^-5	1	SPLICE_SITE_REGION Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	5.103e^-5	1	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20094722	2R_20094722_SNP [dm3] 2R_24207199_SNP [dm6]	A	T	5.108e^-5	1	UPSTREAM CG11406 INTRON CG11406
3R	22227371	3R_22227371_SNP [dm3] 3R_26401649_SNP [dm6]	G	A	5.167e^-5	1	DOWNSTREAM ppk15 INTERGENIC
3L	12750309	3L_12750309_SNP [dm3] 3L_12757209_SNP [dm6]	C	G	5.272e^-5	1	NON_SYNONYMOUS_CODING CG32113
X	3184892	X_3184892_SNP [dm3] X_3290859_SNP [dm6]	G	A	5.272e^-5	1	UPSTREAM dnc INTRON dnc
2L	16520481	2L_16520481_SNP [dm3] 2L_16520481_SNP [dm6]	T	C	5.300e^-5	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
X	14260644	X_14260644_DEL [dm3] X_14366611_DEL [dm6]	CTGAGTTTT	C	5.358e^-5	1	INTRON dpr8
X	6790350	X_6790350_INS [dm3] X_6896317_INS [dm6]	A	TCGTTGTG	5.361e^-5	1	INTERGENIC
3R	22215088	3R_22215088_SNP [dm3] 3R_26389366_SNP [dm6]	C	T	5.420e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
3L	6478162	3L_6478162_SNP [dm3] 3L_6485062_SNP [dm6]	G	A	5.492e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
X	4585945	X_4585945_SNP [dm3] X_4691912_SNP [dm6]	C	T	5.541e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
3R	22091412	3R_22091412_SNP [dm3] 3R_26265690_SNP [dm6]	A	G	5.587e^-5	1	INTRON CG6154
3L	6478219	3L_6478219_SNP [dm3] 3L_6485119_SNP [dm6]	G	C	5.620e^-5	1	UTR_3_PRIME CG42747	TF binding site mE1_TFBS_cad
3R	15168659	3R_15168659_SNP [dm3] 3R_19342937_SNP [dm6]	G	T	6.001e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	9367233	3L_9367233_INS [dm3] 3L_9374133_INS [dm6]	A	ACTATATA	6.012e^-5	1	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	11567729	3L_11567729_SNP [dm3] 3L_11574629_SNP [dm6]	G	A	6.078e^-5	1	UTR_5_PRIME CG33490 DOWNSTREAM CG33489
2L	12556090	2L_12556090_SNP [dm3] 2L_12556090_SNP [dm6]	T	C	6.160e^-5	1	INTERGENIC
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	6.494e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9991603	2L_9991603_SNP [dm3] 2L_9991603_SNP [dm6]	A	C	6.678e^-5	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3008150	3L_3008150_SNP [dm3] 3L_3008150_SNP [dm6]	T	C	6.709e^-5	1	INTRON FMRFaR
2R	17477719	2R_17477719_SNP [dm3] 2R_21590214_SNP [dm6]	A	G	6.769e^-5	1	UPSTREAM CG33225 INTERGENIC
X	20867430	X_20867430_SNP [dm3] X_20996403_SNP [dm6]	C	T	7.185e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19973970	3R_19973970_SNP [dm3] 3R_24148248_SNP [dm6]	G	A	7.238e^-5	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2R	18888654	2R_18888654_SNP [dm3] 2R_23001131_SNP [dm6]	C	G	7.268e^-5	1	INTRON twi
2R	6556000	2R_6556000_SNP [dm3] 2R_10668495_SNP [dm6]	A	C	7.289e^-5	1	INTERGENIC
3L	4579889	3L_4579889_SNP [dm3] 3L_4579889_SNP [dm6]	C	T	7.390e^-5	1	INTRON CG42540
3L	4579893	3L_4579893_SNP [dm3] 3L_4579893_SNP [dm6]	C	T	7.390e^-5	1	INTRON CG42540
3R	21946932	3R_21946932_SNP [dm3] 3R_26121210_SNP [dm6]	G	A	7.398e^-5	1	INTRON CG31324
3L	11854273	3L_11854273_SNP [dm3] 3L_11861173_SNP [dm6]	C	T	7.455e^-5	1	INTRON CG44837
X	3184863	X_3184863_SNP [dm3] X_3290830_SNP [dm6]	G	A	7.494e^-5	1	UPSTREAM dnc INTRON dnc
X	4483686	X_4483686_SNP [dm3] X_4589653_SNP [dm6]	C	G	7.495e^-5	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	15968569	3R_15968569_SNP [dm3] 3R_20142847_SNP [dm6]	C	T	7.500e^-5	1	INTERGENIC
2L	19331018	2L_19331018_SNP [dm3] 2L_19331018_SNP [dm6]	A	T	7.507e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16985991	2R_16985991_SNP [dm3] 2R_21098486_SNP [dm6]	T	C	7.547e^-5	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	1504828	2R_1504828_SNP [dm3] 2R_5617323_SNP [dm6]	C	G	7.599e^-5	1	INTERGENIC
X	16559400	X_16559400_SNP [dm3] X_16665367_SNP [dm6]	A	G	7.632e^-5	1	UPSTREAM CG15865 INTRON r
X	16559402	X_16559402_SNP [dm3] X_16665369_SNP [dm6]	A	T	7.632e^-5	1	UPSTREAM CG15865 INTRON r
3L	750457	3L_750457_SNP [dm3] 3L_750457_SNP [dm6]	C	A	7.643e^-5	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
3R	14046639	3R_14046639_SNP [dm3] 3R_18220917_SNP [dm6]	G	T	7.671e^-5	1	SYNONYMOUS_CODING CG7988 UPSTREAM CG7183 DOWNSTREAM mTerf5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	22070682	3R_22070682_SNP [dm3] 3R_26244960_SNP [dm6]	T	C	7.762e^-5	1	INTRON CR42745
3L	3029602	3L_3029602_SNP [dm3] 3L_3029602_SNP [dm6]	C	T	7.768e^-5	1	INTERGENIC
3L	1589050	3L_1589050_SNP [dm3] 3L_1589050_SNP [dm6]	C	A	7.794e^-5	1	INTRON CG13917
2R	16946718	2R_16946718_SNP [dm3] 2R_21059213_SNP [dm6]	G	A	7.838e^-5	1	UTR_3_PRIME cpa DOWNSTREAM CG15653
3L	10471210	3L_10471210_SNP [dm3] 3L_10478110_SNP [dm6]	G	C	7.893e^-5	1	INTERGENIC
2L	10985975	2L_10985975_SNP [dm3] 2L_10985975_SNP [dm6]	T	C	7.903e^-5	1	NON_SYNONYMOUS_CODING piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16440261	2L_16440261_SNP [dm3] 2L_16440261_SNP [dm6]	A	G	7.932e^-5	1	INTRON CG5888
2L	4843699	2L_4843699_SNP [dm3] 2L_4843699_SNP [dm6]	A	G	8.056e^-5	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843704	2L_4843704_SNP [dm3] 2L_4843704_SNP [dm6]	G	C	8.056e^-5	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	4843706	2L_4843706_SNP [dm3] 2L_4843706_SNP [dm6]	T	C	8.056e^-5	1	INTRON mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	16698650	3L_16698650_SNP [dm3] 3L_16705550_SNP [dm6]	T	C	8.066e^-5	1	SYNONYMOUS_CODING CG9692 INTRON Lasp & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13824704	2L_13824704_SNP [dm3] 2L_13824704_SNP [dm6]	T	C	8.185e^-5	1	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2255871	3L_2255871_SNP [dm3] 3L_2255871_SNP [dm6]	C	T	8.210e^-5	1	UTR_5_PRIME CG1275 INTRON CG1275	TF binding site mE1_TFBS_chinmo
3L	7722478	3L_7722478_SNP [dm3] 3L_7729378_SNP [dm6]	G	A	8.217e^-5	1	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	14704160	2R_14704160_SNP [dm3] 2R_18816655_SNP [dm6]	C	T	8.236e^-5	1	UPSTREAM CG15096 INTERGENIC
3L	11523709	3L_11523709_SNP [dm3] 3L_11530609_SNP [dm6]	C	A	8.423e^-5	1	INTRON Mob2
X	12156697	X_12156697_DEL [dm3] X_12262664_DEL [dm6]	TT	T	8.502e^-5	1	INTRON Ten-a
X	16559391	X_16559391_SNP [dm3] X_16665358_SNP [dm6]	A	T	8.528e^-5	1	UPSTREAM CG15865 INTRON r
3L	6941023	3L_6941023_SNP [dm3] 3L_6947923_SNP [dm6]	C	T	8.552e^-5	1	SPLICE_SITE_REGION tow INTRON tow
X	21896150	X_21896150_SNP [dm3] X_22494314_SNP [dm6]	A	G	8.683e^-5	1	INTRON l_1_G0196
2R	11333214	2R_11333214_SNP [dm3] 2R_15445709_SNP [dm6]	G	A	8.711e^-5	1	INTRON CG43729
3R	19974098	3R_19974098_SNP [dm3] 3R_24148376_SNP [dm6]	T	G	8.720e^-5	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2R	7099547	2R_7099547_SNP [dm3] 2R_11212042_SNP [dm6]	G	A	8.932e^-5	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22235658	3R_22235658_SNP [dm3] 3R_26409936_SNP [dm6]	G	A	8.934e^-5	1	INTERGENIC
3R	22235671	3R_22235671_SNP [dm3] 3R_26409949_SNP [dm6]	G	A	8.934e^-5	1	INTERGENIC
3R	26569118	3R_26569118_SNP [dm3] 3R_30743396_SNP [dm6]	G	C	9.041e^-5	1	SYNONYMOUS_CODING CG15543	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13331374	3L_13331374_SNP [dm3] 3L_13338274_SNP [dm6]	A	T	9.098e^-5	1	INTERGENIC
X	2097613	X_2097613_SNP [dm3] X_2203580_SNP [dm6]	C	T	9.190e^-5	1	SYNONYMOUS_CODING CG18031 INTRON Mct1	TF binding site mE1_TFBS_chinmo
3L	8614101	3L_8614101_SNP [dm3] 3L_8621001_SNP [dm6]	A	T	9.209e^-5	1	SYNONYMOUS_CODING S-Lap2
2R	20315930	2R_20315930_SNP [dm3] 2R_24428407_SNP [dm6]	T	C	9.231e^-5	1	UPSTREAM prom INTERGENIC
3L	4131450	3L_4131450_SNP [dm3] 3L_4131450_SNP [dm6]	G	T	9.261e^-5	1	INTRON ens
3L	2663892	3L_2663892_SNP [dm3] 3L_2663892_SNP [dm6]	T	G	9.334e^-5	1	DOWNSTREAM CG33234 INTRON Fife
X	4585943	X_4585943_SNP [dm3] X_4691910_SNP [dm6]	G	A	9.431e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	4584155	X_4584155_SNP [dm3] X_4690122_SNP [dm6]	G	A	9.446e^-5	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16985973	2R_16985973_SNP [dm3] 2R_21098468_SNP [dm6]	G	A	9.449e^-5	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3R	18341692	3R_18341692_SNP [dm3] 3R_22515970_SNP [dm6]	T	C	9.467e^-5	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	insulator Insulator_Class_II.mE01 regulatory region REDfly_CRMs
2L	19317924	2L_19317924_SNP [dm3] 2L_19317924_SNP [dm6]	T	A	9.586e^-5	1	INTERGENIC
3R	11828964	3R_11828964_SNP [dm3] 3R_16003242_SNP [dm6]	C	T	9.687e^-5	1	SYNONYMOUS_CODING srp UTR_3_PRIME srp	TF binding site mE1_TFBS_cad
X	6790363	X_6790363_SNP [dm3] X_6896330_SNP [dm6]	C	T	9.824e^-5	1	INTERGENIC
2L	2899341	2L_2899341_SNP [dm3] 2L_2899341_SNP [dm6]	A	G	9.857e^-5	1	INTRON lilli	TF binding site mE1_TFBS_Trl
3L	14417513	3L_14417513_SNP [dm3] 3L_14424413_SNP [dm6]	T	C	9.863e^-5	1	INTRON bbg
3R	15663123	3R_15663123_SNP [dm3] 3R_19837401_SNP [dm6]	G	A	9.867e^-5	1	UPSTREAM bnl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1073058	3L_1073058_SNP [dm3] 3L_1073058_SNP [dm6]	G	A	9.931e^-5	1	INTRON bab1
2L	13698582	2L_13698582_SNP [dm3] 2L_13698582_SNP [dm6]	C	T	9.983e^-5	1	INTRON CG31814
X	16559389	X_16559389_SNP [dm3] X_16665356_SNP [dm6]	T	C	1.004e^-4	1	UPSTREAM CG15865 INTRON r
X	17863857	X_17863857_SNP [dm3] X_17969824_SNP [dm6]	A	C	1.027e^-4	1	INTRON Sh
3R	16407134	3R_16407134_SNP [dm3] 3R_20581412_SNP [dm6]	A	G	1.028e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407141	3R_16407141_SNP [dm3] 3R_20581419_SNP [dm6]	G	T	1.028e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
3R	16407146	3R_16407146_SNP [dm3] 3R_20581424_SNP [dm6]	G	C	1.028e^-4	1	DOWNSTREAM Srp14 & 1 other INTRON CG34008
2L	18147696	2L_18147696_SNP [dm3] 2L_18147696_SNP [dm6]	T	C	1.032e^-4	1	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18888655	2R_18888655_SNP [dm3] 2R_23001132_SNP [dm6]	C	A	1.032e^-4	1	INTRON twi
3L	1706503	3L_1706503_SNP [dm3] 3L_1706503_SNP [dm6]	C	A	1.032e^-4	1	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14615291	3R_14615291_SNP [dm3] 3R_18789569_SNP [dm6]	A	C	1.034e^-4	1	INTRON CG7720	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11838561	3R_11838561_INS [dm3] 3R_16012839_INS [dm6]	T	TTTGGGT	1.037e^-4	1	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
3R	19974057	3R_19974057_SNP [dm3] 3R_24148335_SNP [dm6]	T	C	1.041e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	2899331	2L_2899331_SNP [dm3] 2L_2899331_SNP [dm6]	C	G	1.044e^-4	1	INTRON lilli
2R	18976864	2R_18976864_SNP [dm3] 2R_23089341_SNP [dm6]	T	C	1.046e^-4	1	DOWNSTREAM CG9876 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18341886	3R_18341886_SNP [dm3] 3R_22516164_SNP [dm6]	T	C	1.049e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	18341934	3R_18341934_SNP [dm3] 3R_22516212_SNP [dm6]	C	T	1.049e^-4	1	DOWNSTREAM Octbeta1R INTRON Octbeta1R	regulatory region REDfly_CRMs
2L	10267822	2L_10267822_SNP [dm3] 2L_10267822_SNP [dm6]	T	C	1.072e^-4	1	SYNONYMOUS_CODING CG4953
2R	3288141	2R_3288141_INS [dm3] 2R_7400636_INS [dm6]	A	AT	1.085e^-4	1	UPSTREAM CG11112 INTRON Eaf
2L	9966334	2L_9966334_SNP [dm3] 2L_9966334_SNP [dm6]	T	C	1.085e^-4	1	SYNONYMOUS_CODING Dref UPSTREAM RpL13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	11827789	3R_11827789_SNP [dm3] 3R_16002067_SNP [dm6]	A	C	1.086e^-4	1	INTRON srp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	888405	3L_888405_SNP [dm3] 3L_888405_SNP [dm6]	A	T	1.093e^-4	1	NON_SYNONYMOUS_CODING CG32479 START_GAINED CG32479 UTR_5_PRIME CG32479
3R	22231164	3R_22231164_INS [dm3] 3R_26405442_INS [dm6]	A	ATT	1.097e^-4	1	INTERGENIC
X	13431787	X_13431787_SNP [dm3] X_13537754_SNP [dm6]	T	C	1.097e^-4	1	INTERGENIC
3R	6977431	3R_6977431_SNP [dm3] 3R_11151709_SNP [dm6]	T	C	1.099e^-4	1	UTR_3_PRIME Ugt86Di DOWNSTREAM Ugt86Di
3R	27209976	3R_27209976_SNP [dm3] 3R_31384254_SNP [dm6]	A	G	1.102e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	4090400	X_4090400_SNP [dm3] X_4196367_SNP [dm6]	G	A	1.104e^-4	1	INTRON Fas2
3R	19974446	3R_19974446_SNP [dm3] 3R_24148724_SNP [dm6]	A	C	1.122e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
3L	15043475	3L_15043475_INS [dm3] 3L_15050375_INS [dm6]	A	AG	1.131e^-4	1	UTR_3_PRIME CG12310 UPSTREAM CG43678 & 1 other DOWNSTREAM CG43679 INTRON Sytbeta
3L	21381065	3L_21381065_SNP [dm3] 3L_21387965_SNP [dm6]	G	T	1.132e^-4	1	INTRON rgn
2R	19659108	2R_19659108_SNP [dm3] 2R_23771585_SNP [dm6]	G	A	1.138e^-4	1	INTRON CG9850
X	4574376	X_4574376_SNP [dm3] X_4680343_SNP [dm6]	A	T	1.139e^-4	1	UTR_3_PRIME Pp2C1 UPSTREAM rap DOWNSTREAM Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4484210	X_4484210_SNP [dm3] X_4590177_SNP [dm6]	T	C	1.143e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	19973900	3R_19973900_SNP [dm3] 3R_24148178_SNP [dm6]	A	T	1.153e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
X	19780164	X_19780164_SNP [dm3] X_19886131_SNP [dm6]	A	T	1.154e^-4	1	UTR_3_PRIME amn INTRON Hers	TF binding site mE1_TFBS_Trl
X	4865181	X_4865181_SNP [dm3] X_4971148_SNP [dm6]	A	T	1.154e^-4	1	INTRON CR44833	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18673838	2R_18673838_SNP [dm3] 2R_22786333_SNP [dm6]	G	T	1.158e^-4	1	INTRON CG42260
X	5057492	X_5057492_DEL [dm3] X_5163459_DEL [dm6]	TATTGC	T	1.165e^-4	1	INTRON rg & 1 other
X	4587346	X_4587346_SNP [dm3] X_4693313_SNP [dm6]	A	G	1.166e^-4	1	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19317934	2L_19317934_SNP [dm3] 2L_19317934_SNP [dm6]	C	A	1.173e^-4	1	INTERGENIC
2L	3765598	2L_3765598_SNP [dm3] 2L_3765598_SNP [dm6]	T	C	1.174e^-4	1	UPSTREAM CG43707 INTRON CG43707 & 1 other
3L	4516388	3L_4516388_SNP [dm3] 3L_4516388_SNP [dm6]	A	C	1.179e^-4	1	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	17911898	X_17911898_SNP [dm3] X_18017865_SNP [dm6]	T	A	1.190e^-4	1	INTRON Sh
X	16108185	X_16108185_SNP [dm3] X_16214152_SNP [dm6]	T	C	1.203e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	1.213e^-4	1	DOWNSTREAM Diedel2 INTRON alph
2L	13274788	2L_13274788_SNP [dm3] 2L_13274788_SNP [dm6]	C	T	1.216e^-4	1	SYNONYMOUS_CODING CG44085 INTRON CG44085
3L	3598631	3L_3598631_SNP [dm3] 3L_3598631_SNP [dm6]	C	T	1.225e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_cad
2L	8707580	2L_8707580_SNP [dm3] 2L_8707580_SNP [dm6]	T	A	1.227e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
X	3184944	X_3184944_SNP [dm3] X_3290911_SNP [dm6]	T	G	1.233e^-4	1	UPSTREAM dnc INTRON dnc
2R	18032534	2R_18032534_SNP [dm3] 2R_22145029_SNP [dm6]	A	T	1.240e^-4	1	INTRON a
2L	6125762	2L_6125762_SNP [dm3] 2L_6125762_SNP [dm6]	G	A	1.241e^-4	1	DOWNSTREAM WDR79 INTRON Arpc4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8396430	3L_8396430_SNP [dm3] 3L_8403330_SNP [dm6]	C	T	1.252e^-4	1	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057
3L	750430	3L_750430_SNP [dm3] 3L_750430_SNP [dm6]	A	G	1.254e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
X	4669683	X_4669683_SNP [dm3] X_4775650_SNP [dm6]	C	T	1.256e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15277392	3L_15277392_SNP [dm3] 3L_15284292_SNP [dm6]	T	C	1.268e^-4	1	INTERGENIC
X	4586084	X_4586084_DEL [dm3] X_4692051_DEL [dm6]	TT	T	1.276e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	4586128	X_4586128_SNP [dm3] X_4692095_SNP [dm6]	C	T	1.276e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
2R	9886112	2R_9886112_SNP [dm3] 2R_13998607_SNP [dm6]	G	A	1.291e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
2R	9886432	2R_9886432_SNP [dm3] 2R_13998927_SNP [dm6]	T	C	1.291e^-4	1	INTRON mam	TF binding site BDTNP1_TFBS_dl
3L	4131327	3L_4131327_SNP [dm3] 3L_4131327_SNP [dm6]	T	A	1.313e^-4	1	INTRON ens
2L	6285680	2L_6285680_SNP [dm3] 2L_6285680_SNP [dm6]	G	T	1.319e^-4	1	INTRON Ddr
X	2379467	X_2379467_SNP [dm3] X_2485434_SNP [dm6]	G	A	1.333e^-4	1	INTRON trol
X	16739664	X_16739664_SNP [dm3] X_16845631_SNP [dm6]	A	C	1.333e^-4	1	UTR_3_PRIME CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7105140	3L_7105140_INS [dm3] 3L_7112040_INS [dm6]	A	AA	1.335e^-4	1	INTRON form3
3R	15168638	3R_15168638_SNP [dm3] 3R_19342916_SNP [dm6]	T	A	1.337e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	19557710	2R_19557710_SNP [dm3] 2R_23670187_SNP [dm6]	T	G	1.359e^-4	1	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6827467	2L_6827467_SNP [dm3] 2L_6827467_SNP [dm6]	C	A	1.368e^-4	1	INTRON sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	22231585	X_22231585_SNP [dm3] X_22829749_SNP [dm6]	G	A	1.370e^-4	1	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	7813069	2R_7813069_SNP [dm3] 2R_11925564_SNP [dm6]	T	A	1.370e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
2R	17042675	2R_17042675_SNP [dm3] 2R_21155170_SNP [dm6]	T	G	1.373e^-4	1	NON_SYNONYMOUS_CODING CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7768306	2L_7768306_SNP [dm3] 2L_7768306_SNP [dm6]	G	T	1.380e^-4	1	INTRON CG7191
X	2088714	X_2088714_DEL [dm3] X_2194681_DEL [dm6]	GGGAAAG	G	1.381e^-4	1	UTR_5_PRIME Mct1 UPSTREAM CG14053 INTRON Mct1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20431701	X_20431701_SNP [dm3] X_20560674_SNP [dm6]	A	C	1.394e^-4	1	INTRON RunxB
3R	21099328	3R_21099328_SNP [dm3] 3R_25273606_SNP [dm6]	G	A	1.399e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
3L	4131490	3L_4131490_SNP [dm3] 3L_4131490_SNP [dm6]	T	C	1.401e^-4	1	INTRON ens
X	19443880	X_19443880_SNP [dm3] X_19549847_SNP [dm6]	A	T	1.404e^-4	1	INTERGENIC
2L	9487625	2L_9487625_SNP [dm3] 2L_9487625_SNP [dm6]	G	C	1.406e^-4	1	INTERGENIC
3R	19974699	3R_19974699_SNP [dm3] 3R_24148977_SNP [dm6]	A	G	1.420e^-4	1	UPSTREAM Slimp DOWNSTREAM p38c INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11333645	2R_11333645_SNP [dm3] 2R_15446140_SNP [dm6]	G	A	1.426e^-4	1	INTRON CG43729
2L	8412283	2L_8412283_SNP [dm3] 2L_8412283_SNP [dm6]	T	C	1.430e^-4	1	UTR_3_PRIME CG13398 UPSTREAM CG13397 DOWNSTREAM CG13398
2R	1425325	2R_1425325_SNP [dm3] 2R_5537820_SNP [dm6]	T	A	1.435e^-4	1	INTRON CG30438	transposable element FlyBase
3L	16964282	3L_16964282_SNP [dm3] 3L_16971182_SNP [dm6]	A	C	1.438e^-4	1	INTRON Exn
2L	2061144	2L_2061144_SNP [dm3] 2L_2061144_SNP [dm6]	C	A	1.445e^-4	1	INTRON dpr3
3R	23867938	3R_23867938_SNP [dm3] 3R_28042216_SNP [dm6]	T	C	1.449e^-4	1	INTRON CG34362
3R	18162612	3R_18162612_SNP [dm3] 3R_22336890_SNP [dm6]	C	A	1.449e^-4	1	DOWNSTREAM CG5388 INTRON CG5388
3L	18875496	3L_18875496_SNP [dm3] 3L_18882396_SNP [dm6]	T	C	1.455e^-4	1	UTR_5_PRIME CG3961 INTRON CG3961
2R	13709439	2R_13709439_SNP [dm3] 2R_17821934_SNP [dm6]	C	G	1.459e^-4	1	INTRON grh	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi transposable element FlyBase
3R	26516895	3R_26516895_SNP [dm3] 3R_30691173_SNP [dm6]	A	T	1.464e^-4	1	NON_SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
3L	11109297	3L_11109297_SNP [dm3] 3L_11116197_SNP [dm6]	G	T	1.472e^-4	1	SYNONYMOUS_CODING fd68A
3R	16407317	3R_16407317_SNP [dm3] 3R_20581595_SNP [dm6]	C	T	1.496e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	12898733	2L_12898733_SNP [dm3] 2L_12898733_SNP [dm6]	C	T	1.498e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17769504	2R_17769504_SNP [dm3] 2R_21881999_SNP [dm6]	G	A	1.502e^-4	1	SYNONYMOUS_CODING PpN58A INTRON Fili	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16134519	3R_16134519_SNP [dm3] 3R_20308797_SNP [dm6]	C	T	1.503e^-4	1	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	12829433	2R_12829433_SNP [dm3] 2R_16941928_SNP [dm6]	C	T	1.513e^-4	1	INTRON Pkc53E
2R	10719573	2R_10719573_SNP [dm3] 2R_14832068_SNP [dm6]	G	A	1.530e^-4	1	UPSTREAM CG10205 INTERGENIC
X	16108171	X_16108171_SNP [dm3] X_16214138_SNP [dm6]	G	A	1.530e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7722633	3L_7722633_SNP [dm3] 3L_7729533_SNP [dm6]	G	A	1.541e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	4587037	X_4587037_SNP [dm3] X_4693004_SNP [dm6]	T	C	1.550e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	2096260	X_2096260_SNP [dm3] X_2202227_SNP [dm6]	C	T	1.552e^-4	1	UPSTREAM CR43637 INTRON Mct1 & 1 other
3R	22236063	3R_22236063_SNP [dm3] 3R_26410341_SNP [dm6]	T	G	1.570e^-4	1	INTERGENIC
3R	19974330	3R_19974330_SNP [dm3] 3R_24148608_SNP [dm6]	G	A	1.570e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
X	10051883	X_10051883_SNP [dm3] X_10157850_SNP [dm6]	G	C	1.583e^-4	1	UPSTREAM CG43902 INTRON CR44894
3R	16407364	3R_16407364_SNP [dm3] 3R_20581642_SNP [dm6]	A	T	1.599e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
3R	19974117	3R_19974117_SNP [dm3] 3R_24148395_SNP [dm6]	T	C	1.600e^-4	1	NON_SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2L	12905530	2L_12905530_DEL [dm3] 2L_12905530_DEL [dm6]	CTATATATACTTTACATTAT...	C	1.611e^-4	1	INTERGENIC
X	22231583	X_22231583_SNP [dm3] X_22829747_SNP [dm6]	G	T	1.621e^-4	1	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	22236058	3R_22236058_SNP [dm3] 3R_26410336_SNP [dm6]	G	A	1.627e^-4	1	INTERGENIC
2R	4945353	2R_4945353_SNP [dm3] 2R_9057848_SNP [dm6]	G	C	1.627e^-4	1	INTRON CG13743
3R	19974237	3R_19974237_SNP [dm3] 3R_24148515_SNP [dm6]	C	T	1.638e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM p38c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Ubx
X	15673819	X_15673819_SNP [dm3] X_15779786_SNP [dm6]	T	G	1.645e^-4	1	NON_SYNONYMOUS_CODING CG43673 DOWNSTREAM Efhc1.1
X	6927637	X_6927637_SNP [dm3] X_7033604_SNP [dm6]	A	C	1.652e^-4	1	INTRON CG12541	TF binding site BDTNP1_TFBS_twi
2R	19127148	2R_19127148_SNP [dm3] 2R_23239625_SNP [dm6]	T	G	1.654e^-4	1	INTERGENIC
3R	20352479	3R_20352479_SNP [dm3] 3R_24526757_SNP [dm6]	G	A	1.660e^-4	1	NON_SYNONYMOUS_CODING CG13618
X	4669688	X_4669688_INS [dm3] X_4775655_INS [dm6]	G	GCACACA	1.660e^-4	1	UPSTREAM CR45515 DOWNSTREAM CG2871 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6533066	X_6533066_DEL [dm3] X_6639033_DEL [dm6]	TTT	T	1.669e^-4	1	INTRON pigs
3R	6986476	3R_6986476_SNP [dm3] 3R_11160754_SNP [dm6]	A	T	1.671e^-4	1	UPSTREAM CG4757 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22087373	3R_22087373_SNP [dm3] 3R_26261651_SNP [dm6]	T	A	1.682e^-4	1	UPSTREAM Ald DOWNSTREAM CR44321 INTERGENIC
2L	10061186	2L_10061186_SNP [dm3] 2L_10061186_SNP [dm6]	C	G	1.696e^-4	1	INTRON Spn31A
2R	7813063	2R_7813063_SNP [dm3] 2R_11925558_SNP [dm6]	A	C	1.700e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_run
3R	22091445	3R_22091445_SNP [dm3] 3R_26265723_SNP [dm6]	C	A	1.701e^-4	1	INTRON CG6154
2R	16272089	2R_16272089_SNP [dm3] 2R_20384584_SNP [dm6]	C	T	1.705e^-4	1	INTERGENIC
2L	4891283	2L_4891283_SNP [dm3] 2L_4891283_SNP [dm6]	T	C	1.706e^-4	1	UPSTREAM CG3036 DOWNSTREAM CR45716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	7866646	3L_7866646_SNP [dm3] 3L_7873546_SNP [dm6]	C	T	1.716e^-4	1	INTRON CG32365
3R	19756304	3R_19756304_SNP [dm3] 3R_23930582_SNP [dm6]	A	G	1.718e^-4	1	SYNONYMOUS_CODING Rpt2 DOWNSTREAM CG31142	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7655307	3L_7655307_SNP [dm3] 3L_7662207_SNP [dm6]	C	T	1.718e^-4	1	SYNONYMOUS_CODING Ank2 INTRON CG32373 & 2 others	TF binding site mE1_TFBS_sens
2L	12538137	2L_12538137_SNP [dm3] 2L_12538137_SNP [dm6]	A	G	1.742e^-4	1	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
3R	16407390	3R_16407390_SNP [dm3] 3R_20581668_SNP [dm6]	C	T	1.743e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
2L	12538131	2L_12538131_SNP [dm3] 2L_12538131_SNP [dm6]	C	T	1.749e^-4	1	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
3L	7936394	3L_7936394_SNP [dm3] 3L_7943294_SNP [dm6]	C	A	1.769e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	1.787e^-4	1	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	22236096	3R_22236096_SNP [dm3] 3R_26410374_SNP [dm6]	C	A	1.791e^-4	1	INTERGENIC
2R	18880237	2R_18880237_SNP [dm3] 2R_22992714_SNP [dm6]	A	T	1.799e^-4	1	DOWNSTREAM CG9896 INTRON twi
2L	6259168	2L_6259168_SNP [dm3] 2L_6259168_SNP [dm6]	T	A	1.803e^-4	1	INTRON Ddr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10230572	3R_10230572_SNP [dm3] 3R_14404850_SNP [dm6]	T	A	1.810e^-4	1	INTRON cv-c	TF binding site mE1_TFBS_inv
2L	7768317	2L_7768317_SNP [dm3] 2L_7768317_SNP [dm6]	A	C	1.822e^-4	1	INTRON CG7191
3L	10810654	3L_10810654_SNP [dm3] 3L_10817554_SNP [dm6]	A	G	1.823e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3R	10304650	3R_10304650_SNP [dm3] 3R_14478928_SNP [dm6]	G	A	1.849e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	19973964	3R_19973964_SNP [dm3] 3R_24148242_SNP [dm6]	G	A	1.856e^-4	1	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
3L	5472352	3L_5472352_SNP [dm3] 3L_5479252_SNP [dm6]	G	C	1.858e^-4	1	UPSTREAM CG4835 INTERGENIC
3R	22094080	3R_22094080_SNP [dm3] 3R_26268358_SNP [dm6]	A	T	1.859e^-4	1	INTRON CG6154
X	4586002	X_4586002_SNP [dm3] X_4691969_SNP [dm6]	T	C	1.860e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	16739593	X_16739593_SNP [dm3] X_16845560_SNP [dm6]	T	A	1.861e^-4	1	UTR_3_PRIME CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	5394522	X_5394522_SNP [dm3] X_5500489_SNP [dm6]	T	G	1.866e^-4	1	SYNONYMOUS_CODING CG32762 UPSTREAM CG4151	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	6973023	3R_6973023_SNP [dm3] 3R_11147301_SNP [dm6]	T	C	1.879e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12750501	3L_12750501_SNP [dm3] 3L_12757401_SNP [dm6]	G	A	1.884e^-4	1	NON_SYNONYMOUS_CODING CG32113
2L	13275214	2L_13275214_INS [dm3] 2L_13275214_INS [dm6]	T	TT	1.888e^-4	1	INTRON CG44085	TF binding site BDTNP1_TFBS_twi
X	16740696	X_16740696_SNP [dm3] X_16846663_SNP [dm6]	G	C	1.890e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21945721	3R_21945721_SNP [dm3] 3R_26119999_SNP [dm6]	G	A	1.896e^-4	1	INTRON CG31324
X	4587040	X_4587040_SNP [dm3] X_4693007_SNP [dm6]	A	T	1.914e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	11575799	3L_11575799_SNP [dm3] 3L_11582699_SNP [dm6]	G	T	1.921e^-4	1	NON_SYNONYMOUS_CODING CG32086 UPSTREAM CG33269
3R	27231677	3R_27231677_SNP [dm3] 3R_31405955_SNP [dm6]	A	G	1.946e^-4	1	SPLICE_SITE_REGION Gprk2 UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3L	16275881	3L_16275881_SNP [dm3] 3L_16282781_SNP [dm6]	T	G	1.948e^-4	1	UPSTREAM CG13049 DOWNSTREAM CG13048 INTERGENIC
2L	19305247	2L_19305247_SNP [dm3] 2L_19305247_SNP [dm6]	T	A	1.951e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16559395	X_16559395_SNP [dm3] X_16665362_SNP [dm6]	C	T	1.952e^-4	1	UPSTREAM CG15865 INTRON r
2R	17979845	2R_17979845_SNP [dm3] 2R_22092340_SNP [dm6]	A	T	1.962e^-4	1	NON_SYNONYMOUS_CODING CG11073 UPSTREAM CG44163 INTRON CG11073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18159836	2L_18159836_SNP [dm3] 2L_18159836_SNP [dm6]	C	T	1.967e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3L	12508494	3L_12508494_SNP [dm3] 3L_12515394_SNP [dm6]	T	A	1.970e^-4	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	10810655	3L_10810655_SNP [dm3] 3L_10817555_SNP [dm6]	T	C	1.980e^-4	1	DOWNSTREAM CR45247 INTERGENIC
X	4586184	X_4586184_INS [dm3] X_4692151_INS [dm6]	C	CAT	1.996e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl
X	17863833	X_17863833_SNP [dm3] X_17969800_SNP [dm6]	C	G	1.998e^-4	1	INTRON Sh
2L	4891285	2L_4891285_SNP [dm3] 2L_4891285_SNP [dm6]	G	A	1.999e^-4	1	UPSTREAM CG3036 DOWNSTREAM CR45716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	12146696	X_12146696_SNP [dm3] X_12252663_SNP [dm6]	T	C	2.011e^-4	1	INTRON Ten-a
2R	19629168	2R_19629168_SNP [dm3] 2R_23741645_SNP [dm6]	A	G	2.016e^-4	1	INTRON egl
2L	5455480	2L_5455480_SNP [dm3] 2L_5455480_SNP [dm6]	T	A	2.017e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19443877	X_19443877_SNP [dm3] X_19549844_SNP [dm6]	A	T	2.018e^-4	1	INTERGENIC
3R	25806332	3R_25806332_SNP [dm3] 3R_29980610_SNP [dm6]	C	A	2.019e^-4	1	INTERGENIC
3R	26218551	3R_26218551_SNP [dm3] 3R_30392829_SNP [dm6]	T	A	2.021e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1588322	3L_1588322_INS [dm3] 3L_1588322_INS [dm6]	G	GAGTTAATGG	2.025e^-4	1	INTRON CG13917
2R	9068107	2R_9068107_SNP [dm3] 2R_13180602_SNP [dm6]	T	G	2.030e^-4	1	INTRON CG17724 & 2 others
3L	10810658	3L_10810658_SNP [dm3] 3L_10817558_SNP [dm6]	G	A	2.034e^-4	1	DOWNSTREAM CR45247 INTERGENIC
3R	21099335	3R_21099335_SNP [dm3] 3R_25273613_SNP [dm6]	G	T	2.034e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2L	5455481	2L_5455481_SNP [dm3] 2L_5455481_SNP [dm6]	A	T	2.035e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8707391	2L_8707391_SNP [dm3] 2L_8707391_SNP [dm6]	G	A	2.036e^-4	1	UTR_3_PRIME CG9314 INTRON Hnf4
2R	3693060	2R_3693060_SNP [dm3] 2R_7805555_SNP [dm6]	T	G	2.036e^-4	1	UTR_5_PRIME Nop17l UPSTREAM sax INTRON Nop17l	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	14124820	X_14124820_SNP [dm3] X_14230787_SNP [dm6]	A	G	2.038e^-4	1	SYNONYMOUS_CODING CG42271	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	22082619	3R_22082619_SNP [dm3] 3R_26256897_SNP [dm6]	T	C	2.040e^-4	1	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1897452	3L_1897452_SNP [dm3] 3L_1897452_SNP [dm6]	T	C	2.046e^-4	1	INTRON CG1887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
X	2815585	X_2815585_SNP [dm3] X_2921552_SNP [dm6]	G	A	2.046e^-4	1	SYNONYMOUS_CODING CG3588 INTRON kirre	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	3784878	2L_3784878_INS [dm3] 2L_3784878_INS [dm6]	T	TT	2.049e^-4	1	UPSTREAM CG31960 & 1 other DOWNSTREAM bowl INTERGENIC
X	22231406	X_22231406_SNP [dm3] X_22829570_SNP [dm6]	C	A	2.057e^-4	1	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	20937907	3L_20937907_DEL [dm3] 3L_20944807_DEL [dm6]	TCT	T	2.070e^-4	1	INTRON fng	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14642148	2L_14642148_SNP [dm3] 2L_14642148_SNP [dm6]	A	G	2.076e^-4	1	INTRON osp
2L	14642152	2L_14642152_SNP [dm3] 2L_14642152_SNP [dm6]	C	G	2.076e^-4	1	INTRON osp
X	4483689	X_4483689_SNP [dm3] X_4589656_SNP [dm6]	A	C	2.078e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	26193238	3R_26193238_SNP [dm3] 3R_30367516_SNP [dm6]	T	C	2.081e^-4	1	UTR_3_PRIME hdc
X	16427972	X_16427972_SNP [dm3] X_16533939_SNP [dm6]	A	C	2.082e^-4	1	UPSTREAM para INTERGENIC
3L	11523693	3L_11523693_INS [dm3] 3L_11530593_INS [dm6]	A	AAA	2.094e^-4	1	INTRON Mob2
3R	19340495	3R_19340495_SNP [dm3] 3R_23514773_SNP [dm6]	T	C	2.098e^-4	1	NON_SYNONYMOUS_CODING Irk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18899323	2R_18899323_SNP [dm3] 2R_23011800_SNP [dm6]	T	A	2.105e^-4	1	UTR_3_PRIME CG42741 INTRON twi
X	3743187	X_3743187_SNP [dm3] X_3849154_SNP [dm6]	A	T	2.111e^-4	1	INTRON ec
3L	14761089	3L_14761089_SNP [dm3] 3L_14767989_SNP [dm6]	T	G	2.124e^-4	1	SYNONYMOUS_CODING CG17173 DOWNSTREAM CG9384
2L	16520519	2L_16520519_SNP [dm3] 2L_16520519_SNP [dm6]	T	C	2.125e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Trl
2R	9523822	2R_9523822_SNP [dm3] 2R_13636317_SNP [dm6]	T	C	2.130e^-4	1	INTRON fas
2L	4891261	2L_4891261_SNP [dm3] 2L_4891261_SNP [dm6]	G	C	2.131e^-4	1	UTR_3_PRIME CG15625 UPSTREAM CG3036 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	3896562	2R_3896562_SNP [dm3] 2R_8009057_SNP [dm6]	C	T	2.160e^-4	1	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
3L	1588341	3L_1588341_INS [dm3] 3L_1588341_INS [dm6]	T	TTCTAGAAACTTTAT...	2.175e^-4	1	INTRON CG13917
3L	19374798	3L_19374798_SNP [dm3] 3L_19381698_SNP [dm6]	C	A	2.178e^-4	1	INTRON CG32206
X	22019690	X_22019690_INS [dm3] X_22617854_INS [dm6]	T	TAGA	2.179e^-4	1	INTRON Cda4	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4984014	3L_4984014_SNP [dm3] 3L_4984014_SNP [dm6]	T	C	2.182e^-4	1	INTRON Con
2R	20586215	2R_20586215_SNP [dm3] 2R_24698692_SNP [dm6]	C	T	2.186e^-4	1	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2R	3487358	2R_3487358_SNP [dm3] 2R_7599853_SNP [dm6]	C	T	2.193e^-4	1	INTRON CG1358	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9874410	2R_9874410_SNP [dm3] 2R_13986905_SNP [dm6]	C	G	2.194e^-4	1	UTR_3_PRIME RN-tre DOWNSTREAM RN-tre INTRON RN-tre
2L	4198308	2L_4198308_SNP [dm3] 2L_4198308_SNP [dm6]	A	G	2.194e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4584320	X_4584320_DEL [dm3] X_4690287_DEL [dm6]	TAAAG	A	2.197e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10814069	2R_10814069_SNP [dm3] 2R_14926564_SNP [dm6]	T	C	2.205e^-4	1	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4015849	2L_4015849_SNP [dm3] 2L_4015849_SNP [dm6]	A	T	2.212e^-4	1	INTERGENIC
3R	23867940	3R_23867940_SNP [dm3] 3R_28042218_SNP [dm6]	G	T	2.215e^-4	1	INTRON CG34362
3R	20517771	3R_20517771_DEL [dm3] 3R_24692049_DEL [dm6]	TT	T	2.226e^-4	1	INTRON slo
3R	22094070	3R_22094070_SNP [dm3] 3R_26268348_SNP [dm6]	A	T	2.244e^-4	1	INTRON CG6154
3L	12072545	3L_12072545_SNP [dm3] 3L_12079445_SNP [dm6]	G	A	2.249e^-4	1	INTRON Sema-5c	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9300002	3L_9300002_SNP [dm3] 3L_9306902_SNP [dm6]	A	T	2.251e^-4	1	INTERGENIC
3L	1588344	3L_1588344_SNP [dm3] 3L_1588344_SNP [dm6]	C	T	2.251e^-4	1	INTRON CG13917
3L	9686316	3L_9686316_SNP [dm3] 3L_9693216_SNP [dm6]	G	A	2.276e^-4	1	INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Trl
3L	12750458	3L_12750458_SNP [dm3] 3L_12757358_SNP [dm6]	G	A	2.280e^-4	1	SYNONYMOUS_CODING CG32113
3R	20715549	3R_20715549_SNP [dm3] 3R_24889827_SNP [dm6]	A	T	2.287e^-4	1	INTRON CG31121
3L	1586233	3L_1586233_SNP [dm3] 3L_1586233_SNP [dm6]	C	G	2.298e^-4	1	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	10450397	2L_10450397_SNP [dm3] 2L_10450397_SNP [dm6]	T	C	2.305e^-4	1	SYNONYMOUS_CODING ppk10 DOWNSTREAM loh
3L	21382431	3L_21382431_SNP [dm3] 3L_21389331_SNP [dm6]	T	A	2.311e^-4	1	INTRON rgn
3L	2804614	3L_2804614_SNP [dm3] 3L_2804614_SNP [dm6]	C	T	2.337e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	19388517	3R_19388517_SNP [dm3] 3R_23562795_SNP [dm6]	G	A	2.337e^-4	1	INTRON beat-IV	TF binding site mE1_TFBS_HSA
2L	11176248	2L_11176248_SNP [dm3] 2L_11176248_SNP [dm6]	T	A	2.338e^-4	1	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl
X	16138515	X_16138515_SNP [dm3] X_16244482_SNP [dm6]	A	G	2.338e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	3896561	2R_3896561_SNP [dm3] 2R_8009056_SNP [dm6]	T	A	2.348e^-4	1	UTR_3_PRIME Odc2 DOWNSTREAM CG14762
3R	16407332	3R_16407332_SNP [dm3] 3R_20581610_SNP [dm6]	C	T	2.351e^-4	1	UPSTREAM CG34008 DOWNSTREAM Srp14 & 1 other INTERGENIC
3R	7087172	3R_7087172_SNP [dm3] 3R_11261450_SNP [dm6]	T	A	2.358e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17042880	2R_17042880_SNP [dm3] 2R_21155375_SNP [dm6]	T	C	2.363e^-4	1	INTRON CG30389	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10230873	3R_10230873_SNP [dm3] 3R_14405151_SNP [dm6]	G	C	2.372e^-4	1	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	19377938	2L_19377938_SNP [dm3] 2L_19377938_SNP [dm6]	C	T	2.380e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18387547	3R_18387547_SNP [dm3] 3R_22561825_SNP [dm6]	G	A	2.390e^-4	1	INTRON CG5278
3R	22236059	3R_22236059_SNP [dm3] 3R_26410337_SNP [dm6]	T	A	2.392e^-4	1	INTERGENIC
2L	8287922	2L_8287922_SNP [dm3] 2L_8287922_SNP [dm6]	A	T	2.416e^-4	1	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4306709	3L_4306709_SNP [dm3] 3L_4306709_SNP [dm6]	A	T	2.417e^-4	1	INTRON dyl
2R	12829435	2R_12829435_SNP [dm3] 2R_16941930_SNP [dm6]	G	A	2.418e^-4	1	INTRON Pkc53E
X	16011874	X_16011874_SNP [dm3] X_16117841_SNP [dm6]	C	G	2.429e^-4	1	DOWNSTREAM disco-r INTERGENIC
2R	1565993	2R_1565993_SNP [dm3] 2R_5678488_SNP [dm6]	G	A	2.432e^-4	1	INTRON scaf
3L	15218952	3L_15218952_SNP [dm3] 3L_15225852_SNP [dm6]	C	T	2.440e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2R	18032521	2R_18032521_SNP [dm3] 2R_22145016_SNP [dm6]	C	A	2.442e^-4	1	INTRON a
X	3923088	X_3923088_SNP [dm3] X_4029055_SNP [dm6]	T	A	2.448e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7582417	X_7582417_SNP [dm3] X_7688384_SNP [dm6]	A	G	2.463e^-4	1	SPLICE_SITE_REGION CHES-1-like INTRON CHES-1-like	TF binding site mE1_TFBS_chinmo
2L	5455478	2L_5455478_SNP [dm3] 2L_5455478_SNP [dm6]	T	A	2.463e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17967512	2R_17967512_SNP [dm3] 2R_22080007_SNP [dm6]	T	A	2.465e^-4	1	UPSTREAM Synj DOWNSTREAM GlcT-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11586940	2R_11586940_DEL [dm3] 2R_15699435_DEL [dm6]	CC	C	2.474e^-4	1	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11697347	3L_11697347_SNP [dm3] 3L_11704247_SNP [dm6]	T	G	2.483e^-4	1	INTRON CG11658
X	3768305	X_3768305_SNP [dm3] X_3874272_SNP [dm6]	G	C	2.486e^-4	1	INTRON CG2930	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15986737	2R_15986737_SNP [dm3] 2R_20099232_SNP [dm6]	G	A	2.488e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12751016	3L_12751016_SNP [dm3] 3L_12757916_SNP [dm6]	G	T	2.491e^-4	1	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_inv
X	3862928	X_3862928_SNP [dm3] X_3968895_SNP [dm6]	T	G	2.495e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	9808634	2L_9808634_SNP [dm3] 2L_9808634_SNP [dm6]	C	A	2.510e^-4	1	INTRON nAChRalpha6
2R	14281565	2R_14281565_SNP [dm3] 2R_18394060_SNP [dm6]	A	G	2.510e^-4	1	SYNONYMOUS_CODING Idgf5	TF binding site mE1_TFBS_inv
X	15481923	X_15481923_SNP [dm3] X_15587890_SNP [dm6]	G	A	2.514e^-4	1	SYNONYMOUS_CODING CG8105 INTRON CG9220	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22236064	3R_22236064_SNP [dm3] 3R_26410342_SNP [dm6]	A	G	2.520e^-4	1	INTERGENIC
3R	25679482	3R_25679482_SNP [dm3] 3R_29853760_SNP [dm6]	C	T	2.523e^-4	1	SYNONYMOUS_CODING Cad99C DOWNSTREAM dgt1	TF binding site mE1_TFBS_cad
2L	3883143	2L_3883143_SNP [dm3] 2L_3883143_SNP [dm6]	C	T	2.524e^-4	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7034012	2L_7034012_DEL [dm3] 2L_7034012_DEL [dm6]	GAAT	C	2.549e^-4	1	INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17193102	2L_17193102_SNP [dm3] 2L_17193102_SNP [dm6]	C	T	2.552e^-4	1	INTRON beat-IIIc
2L	14055419	2L_14055419_SNP [dm3] 2L_14055419_SNP [dm6]	A	C	2.561e^-4	1	INTRON nAChRalpha5
3R	10530682	3R_10530682_SNP [dm3] 3R_14704960_SNP [dm6]	G	A	2.565e^-4	1	INTRON kibra
3L	3598903	3L_3598903_SNP [dm3] 3L_3598903_SNP [dm6]	A	T	2.566e^-4	1	INTRON Eip63E
3R	19650210	3R_19650210_SNP [dm3] 3R_23824488_SNP [dm6]	T	C	2.569e^-4	1	DOWNSTREAM CR43285 INTRON CG34355
X	4557427	X_4557427_SNP [dm3] X_4663394_SNP [dm6]	G	A	2.572e^-4	1	INTRON CG3009
2L	1995068	2L_1995068_SNP [dm3] 2L_1995068_SNP [dm6]	C	T	2.574e^-4	1	INTERGENIC
X	4587298	X_4587298_DEL [dm3] X_4693265_DEL [dm6]	AAGCCCTGA	A	2.579e^-4	1	INTRON ctp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12484249	3L_12484249_SNP [dm3] 3L_12491149_SNP [dm6]	T	A	2.580e^-4	1	UPSTREAM CG10660 & 1 other DOWNSTREAM CG10657 EXON CR45681	TF binding site mE1_TFBS_Trl
3L	2804644	3L_2804644_SNP [dm3] 3L_2804644_SNP [dm6]	T	C	2.588e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	8346483	X_8346483_SNP [dm3] X_8452450_SNP [dm6]	T	G	2.591e^-4	1	INTRON org-1	TF binding site mE1_TFBS_cad
X	4950988	X_4950988_SNP [dm3] X_5056955_SNP [dm6]	A	T	2.598e^-4	1	INTRON CR44833 & 1 other
2L	10643492	2L_10643492_SNP [dm3] 2L_10643492_SNP [dm6]	T	G	2.605e^-4	1	UTR_3_PRIME CG31872 UPSTREAM CG18284
2L	9458221	2L_9458221_SNP [dm3] 2L_9458221_SNP [dm6]	C	G	2.616e^-4	1	INTRON numb
X	1162897	X_1162897_SNP [dm3] X_1268864_SNP [dm6]	G	A	2.620e^-4	1	INTRON Atf3
2R	17856409	2R_17856409_SNP [dm3] 2R_21968904_SNP [dm6]	G	A	2.633e^-4	1	INTRON ppk9
2L	10073097	2L_10073097_SNP [dm3] 2L_10073097_SNP [dm6]	C	A	2.634e^-4	1	INTRON CG44153	TF binding site mE1_TFBS_inv
4	133360	4_133360_SNP [dm3] 4_112734_SNP [dm6]	C	A	2.641e^-4	1	UTR_3_PRIME pan
3L	4131587	3L_4131587_SNP [dm3] 3L_4131587_SNP [dm6]	C	T	2.660e^-4	1	INTRON ens
X	11527001	X_11527001_SNP [dm3] X_11632968_SNP [dm6]	C	A	2.680e^-4	1	INTRON Ptp10D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17076891	X_17076891_SNP [dm3] X_17182858_SNP [dm6]	A	G	2.682e^-4	1	DOWNSTREAM CR44026 INTRON baz
X	12156753	X_12156753_SNP [dm3] X_12262720_SNP [dm6]	C	T	2.685e^-4	1	INTRON Ten-a
3L	5689685	3L_5689685_SNP [dm3] 3L_5696585_SNP [dm6]	G	C	2.689e^-4	1	UTR_5_PRIME sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12069886	X_12069886_SNP [dm3] X_12175853_SNP [dm6]	G	A	2.714e^-4	1	DOWNSTREAM CG1924 INTRON Ten-a
2L	12874276	2L_12874276_SNP [dm3] 2L_12874276_SNP [dm6]	C	A	2.715e^-4	1	INTERGENIC
2L	8243896	2L_8243896_SNP [dm3] 2L_8243896_SNP [dm6]	T	C	2.733e^-4	1	DOWNSTREAM CG8086 & 1 other INTRON CG43057
3L	16335959	3L_16335959_SNP [dm3] 3L_16342859_SNP [dm6]	C	G	2.739e^-4	1	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
2R	1437389	2R_1437389_SNP [dm3] 2R_5549884_SNP [dm6]	A	G	2.742e^-4	1	DOWNSTREAM CG30438 INTERGENIC
2R	19199779	2R_19199779_SNP [dm3] 2R_23312256_SNP [dm6]	C	T	2.747e^-4	1	DOWNSTREAM HP1Lcsd INTERGENIC	TF binding site mE1_TFBS_inv
2R	17145109	2R_17145109_SNP [dm3] 2R_21257604_SNP [dm6]	C	A	2.750e^-4	1	UTR_5_PRIME Rgk3 INTRON Rgk3
2L	1928428	2L_1928428_SNP [dm3] 2L_1928428_SNP [dm6]	C	T	2.753e^-4	1	UTR_5_PRIME CG7337 INTRON CG7337
2L	2899376	2L_2899376_SNP [dm3] 2L_2899376_SNP [dm6]	G	T	2.762e^-4	1	INTRON lilli	TF binding site mE1_TFBS_Trl
2L	20799488	2L_20799488_SNP [dm3] 2L_20799488_SNP [dm6]	A	G	2.769e^-4	1	INTRON CG9328	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	12212420	2L_12212420_SNP [dm3] 2L_12212420_SNP [dm6]	A	C	2.778e^-4	1	INTRON aret
3R	22094057	3R_22094057_SNP [dm3] 3R_26268335_SNP [dm6]	T	A	2.781e^-4	1	INTRON CG6154
3R	23480649	3R_23480649_SNP [dm3] 3R_27654927_SNP [dm6]	T	G	2.788e^-4	1	INTRON tau
X	5057537	X_5057537_DEL [dm3] X_5163504_DEL [dm6]	TGTATCATTC	A	2.790e^-4	1	INTRON rg & 1 other
3L	9376007	3L_9376007_SNP [dm3] 3L_9382907_SNP [dm6]	C	T	2.791e^-4	1	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	888403	3L_888403_SNP [dm3] 3L_888403_SNP [dm6]	G	A	2.792e^-4	1	SYNONYMOUS_CODING CG32479 UTR_5_PRIME CG32479
3R	21884905	3R_21884905_SNP [dm3] 3R_26059183_SNP [dm6]	T	C	2.800e^-4	1	UPSTREAM CG14550 & 2 others INTRON RpL34a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
X	18071021	X_18071021_SNP [dm3] X_18176988_SNP [dm6]	C	T	2.807e^-4	1	UPSTREAM Frq2 INTERGENIC
2R	11779335	2R_11779335_SNP [dm3] 2R_15891830_SNP [dm6]	G	A	2.808e^-4	1	UPSTREAM sli INTRON sli	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2L	4891301	2L_4891301_SNP [dm3] 2L_4891301_SNP [dm6]	C	T	2.823e^-4	1	UPSTREAM CG3036 DOWNSTREAM CR45716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	6501892	2L_6501892_SNP [dm3] 2L_6501892_SNP [dm6]	C	T	2.825e^-4	1	INTRON CG31637
3L	2515493	3L_2515493_SNP [dm3] 3L_2515493_SNP [dm6]	C	T	2.836e^-4	1	INTRON Spn
3R	8083034	3R_8083034_SNP [dm3] 3R_12257312_SNP [dm6]	A	T	2.840e^-4	1	DOWNSTREAM CG3942 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2877508	2L_2877508_SNP [dm3] 2L_2877508_SNP [dm6]	A	T	2.841e^-4	1	UPSTREAM CG31950 DOWNSTREAM CG8814 INTRON Prx6005	TF binding site BDTNP1_TFBS_dl
2R	11409462	2R_11409462_SNP [dm3] 2R_15521957_SNP [dm6]	G	A	2.845e^-4	1	INTRON Khc-73
2L	18159829	2L_18159829_SNP [dm3] 2L_18159829_SNP [dm6]	T	A	2.852e^-4	1	UTR_3_PRIME CG42750 UPSTREAM CG7200 DOWNSTREAM CG42750
3R	21099515	3R_21099515_SNP [dm3] 3R_25273793_SNP [dm6]	T	C	2.863e^-4	1	UPSTREAM CG11878 DOWNSTREAM CG11889 & 1 other INTERGENIC
2R	16538400	2R_16538400_SNP [dm3] 2R_20650895_SNP [dm6]	A	G	2.864e^-4	1	INTRON Lrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	6790331	X_6790331_SNP [dm3] X_6896298_SNP [dm6]	C	T	2.864e^-4	1	INTERGENIC
3L	16337612	3L_16337612_SNP [dm3] 3L_16344512_SNP [dm6]	G	A	2.865e^-4	1	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
2R	18032528	2R_18032528_INS [dm3] 2R_22145023_INS [dm6]	G	GG	2.867e^-4	1	INTRON a
3L	16330018	3L_16330018_SNP [dm3] 3L_16336918_SNP [dm6]	G	A	2.872e^-4	1	INTERGENIC
3R	21105432	3R_21105432_SNP [dm3] 3R_25279710_SNP [dm6]	T	A	2.874e^-4	1	SYNONYMOUS_CODING CG10514	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	17267435	3L_17267435_SNP [dm3] 3L_17274335_SNP [dm6]	A	G	2.875e^-4	1	DOWNSTREAM CR45436 INTERGENIC
3L	7279132	3L_7279132_SNP [dm3] 3L_7286032_SNP [dm6]	A	G	2.899e^-4	1	INTRON unc-13-4A
3L	4685533	3L_4685533_SNP [dm3] 3L_4685533_SNP [dm6]	C	T	2.900e^-4	1	INTRON axo
3L	7732844	3L_7732844_SNP [dm3] 3L_7739744_SNP [dm6]	C	A	2.902e^-4	1	INTRON CG32373 & 1 other
2L	8707098	2L_8707098_SNP [dm3] 2L_8707098_SNP [dm6]	C	T	2.914e^-4	1	SYNONYMOUS_CODING CG9314 INTRON Hnf4
2R	18540129	2R_18540129_SNP [dm3] 2R_22652624_SNP [dm6]	C	A	2.914e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3L	13187247	3L_13187247_SNP [dm3] 3L_13194147_SNP [dm6]	T	A	2.919e^-4	1	INTERGENIC
2R	18540103	2R_18540103_SNP [dm3] 2R_22652598_SNP [dm6]	A	T	2.924e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
X	2933131	X_2933131_SNP [dm3] X_3039098_SNP [dm6]	A	G	2.934e^-4	1	INTRON kirre
3L	18844566	3L_18844566_SNP [dm3] 3L_18851466_SNP [dm6]	C	T	2.944e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2379381	X_2379381_SNP [dm3] X_2485348_SNP [dm6]	A	C	2.957e^-4	1	INTRON trol
2L	13698551	2L_13698551_SNP [dm3] 2L_13698551_SNP [dm6]	T	C	2.964e^-4	1	INTRON CG31814
3L	20888774	3L_20888774_SNP [dm3] 3L_20895674_SNP [dm6]	C	G	2.966e^-4	1	DOWNSTREAM Sfp77F INTERGENIC
3R	6975544	3R_6975544_SNP [dm3] 3R_11149822_SNP [dm6]	T	A	2.972e^-4	1	INTERGENIC
2L	6780312	2L_6780312_DEL [dm3] 2L_6780312_DEL [dm6]	TT	T	2.972e^-4	1	INTRON nrv1
X	14260721	X_14260721_SNP [dm3] X_14366688_SNP [dm6]	T	A	2.976e^-4	1	INTRON dpr8
3L	10234282	3L_10234282_SNP [dm3] 3L_10241182_SNP [dm6]	C	A	2.979e^-4	1	DOWNSTREAM CR45403 INTERGENIC
2R	11298188	2R_11298188_SNP [dm3] 2R_15410683_SNP [dm6]	C	T	2.980e^-4	1	INTRON CG43729
X	21911065	X_21911065_SNP [dm3] X_22509229_SNP [dm6]	T	G	2.984e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	25086603	3R_25086603_SNP [dm3] 3R_29260881_SNP [dm6]	G	A	2.989e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	15987820	2R_15987820_SNP [dm3] 2R_20100315_SNP [dm6]	G	C	2.996e^-4	1	INTERGENIC
3L	3007694	3L_3007694_SNP [dm3] 3L_3007694_SNP [dm6]	T	A	2.997e^-4	1	INTRON FMRFaR
2R	11333634	2R_11333634_SNP [dm3] 2R_15446129_SNP [dm6]	C	T	3.001e^-4	1	INTRON CG43729
2R	10256346	2R_10256346_SNP [dm3] 2R_14368841_SNP [dm6]	C	T	3.001e^-4	1	UPSTREAM CG34444 DOWNSTREAM CG34442 INTRON CG34443
3R	24355067	3R_24355067_SNP [dm3] 3R_28529345_SNP [dm6]	G	T	3.015e^-4	1	SYNONYMOUS_CODING Ppn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16428036	X_16428036_SNP [dm3] X_16534003_SNP [dm6]	G	A	3.017e^-4	1	UPSTREAM para INTERGENIC
X	9405621	X_9405621_SNP [dm3] X_9511588_SNP [dm6]	G	C	3.030e^-4	1	NON_SYNONYMOUS_CODING CG34028 INTRON CG32700
X	20431732	X_20431732_SNP [dm3] X_20560705_SNP [dm6]	A	C	3.037e^-4	1	INTRON RunxB
2L	12571249	2L_12571249_SNP [dm3] 2L_12571249_SNP [dm6]	C	T	3.050e^-4	1	UPSTREAM CR44598 EXON CR44597	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9523825	2R_9523825_SNP [dm3] 2R_13636320_SNP [dm6]	A	G	3.054e^-4	1	INTRON fas
2L	8670150	2L_8670150_SNP [dm3] 2L_8670150_SNP [dm6]	G	A	3.064e^-4	1	UTR_3_PRIME Sema-1a DOWNSTREAM Sema-1a
3R	26534479	3R_26534479_DEL [dm3] 3R_30708757_DEL [dm6]	ATA	A	3.066e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21923850	X_21923850_SNP [dm3] X_22522014_SNP [dm6]	A	G	3.072e^-4	1	INTRON CG17600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
3R	21845174	3R_21845174_DEL [dm3] 3R_26019452_DEL [dm6]	GACTTAATGTA...	T	3.077e^-4	1	UPSTREAM CR43643 INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	20317045	2R_20317045_SNP [dm3] 2R_24429522_SNP [dm6]	T	C	3.077e^-4	1	DOWNSTREAM CG15873 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7722600	3L_7722600_SNP [dm3] 3L_7729500_SNP [dm6]	T	G	3.079e^-4	1	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	17471547	2R_17471547_SNP [dm3] 2R_21584042_SNP [dm6]	G	A	3.099e^-4	1	SYNONYMOUS_CODING CG30222
X	5321325	X_5321325_SNP [dm3] X_5427292_SNP [dm6]	C	G	3.099e^-4	1	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
2L	4891300	2L_4891300_SNP [dm3] 2L_4891300_SNP [dm6]	G	T	3.099e^-4	1	UPSTREAM CG3036 DOWNSTREAM CR45716 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18189871	3R_18189871_SNP [dm3] 3R_22364149_SNP [dm6]	G	C	3.103e^-4	1	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
2R	12009189	2R_12009189_SNP [dm3] 2R_16121684_SNP [dm6]	C	T	3.107e^-4	1	NON_SYNONYMOUS_CODING Jhe
2R	7148668	2R_7148668_SNP [dm3] 2R_11261163_SNP [dm6]	A	T	3.112e^-4	1	UTR_3_PRIME Cpr47Ed
2R	7148694	2R_7148694_SNP [dm3] 2R_11261189_SNP [dm6]	A	G	3.112e^-4	1	UTR_3_PRIME Cpr47Ed
3L	7381549	3L_7381549_SNP [dm3] 3L_7388449_SNP [dm6]	T	C	3.126e^-4	1	UPSTREAM CG8564 INTERGENIC
2R	16294511	2R_16294511_SNP [dm3] 2R_20407006_SNP [dm6]	A	T	3.126e^-4	1	INTERGENIC
2L	7338067	2L_7338067_SNP [dm3] 2L_7338067_SNP [dm6]	G	C	3.139e^-4	1	INTRON Wnt6
2L	6503233	2L_6503233_SNP [dm3] 2L_6503233_SNP [dm6]	A	T	3.143e^-4	1	INTRON CG31637	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4198265	2L_4198265_SNP [dm3] 2L_4198265_SNP [dm6]	A	G	3.144e^-4	1	UPSTREAM CG3714 DOWNSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9082986	2L_9082986_SNP [dm3] 2L_9082986_SNP [dm6]	T	A	3.157e^-4	1	INTERGENIC
2L	9085238	2L_9085238_SNP [dm3] 2L_9085238_SNP [dm6]	A	T	3.157e^-4	1	INTRON Toll-4
2R	17437306	2R_17437306_SNP [dm3] 2R_21549801_SNP [dm6]	A	C	3.161e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	13061333	3L_13061333_SNP [dm3] 3L_13068233_SNP [dm6]	C	T	3.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	22224836	X_22224836_SNP [dm3] X_22823000_SNP [dm6]	T	A	3.171e^-4	1	INTERGENIC	transposable element FlyBase
3L	16336139	3L_16336139_SNP [dm3] 3L_16343039_SNP [dm6]	T	C	3.172e^-4	1	SYNONYMOUS_CODING CG4998 INTRON CG4998	TF binding site mE1_TFBS_cad
2L	13824910	2L_13824910_SNP [dm3] 2L_13824910_SNP [dm6]	G	C	3.176e^-4	1	SYNONYMOUS_CODING tam DOWNSTREAM b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8708393	2L_8708393_SNP [dm3] 2L_8708393_SNP [dm6]	T	A	3.178e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
2L	8246765	2L_8246765_SNP [dm3] 2L_8246765_SNP [dm6]	G	A	3.179e^-4	1	SPLICE_SITE_REGION CG8086 SYNONYMOUS_CODING CG8086 INTRON CG8086
2R	20316757	2R_20316757_SNP [dm3] 2R_24429234_SNP [dm6]	A	G	3.184e^-4	1	UPSTREAM prom DOWNSTREAM CG15873 INTERGENIC
3R	19759001	3R_19759001_SNP [dm3] 3R_23933279_SNP [dm6]	A	T	3.184e^-4	1	SYNONYMOUS_CODING RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl
X	9954599	X_9954599_SNP [dm3] X_10060566_SNP [dm6]	C	T	3.190e^-4	1	SYNONYMOUS_CODING CG15312	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22231644	X_22231644_SNP [dm3] X_22829808_SNP [dm6]	C	T	3.197e^-4	1	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	11759566	3L_11759566_INS [dm3] 3L_11766466_INS [dm6]	C	CA	3.198e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	5753139	3L_5753139_SNP [dm3] 3L_5760039_SNP [dm6]	C	T	3.199e^-4	1	SYNONYMOUS_CODING Ubp64E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8391972	3L_8391972_SNP [dm3] 3L_8398872_SNP [dm6]	A	T	3.208e^-4	1	INTRON CG7120
3L	12383562	3L_12383562_SNP [dm3] 3L_12390462_SNP [dm6]	T	C	3.211e^-4	1	INTRON Ncc69
2R	17153328	2R_17153328_SNP [dm3] 2R_21265823_SNP [dm6]	A	G	3.213e^-4	1	SYNONYMOUS_CODING CG30391 DOWNSTREAM CG30393 INTRON Rgk3
3R	27209881	3R_27209881_SNP [dm3] 3R_31384159_SNP [dm6]	C	T	3.230e^-4	1	UPSTREAM CG1607 INTRON CG1607	TF binding site mE1_TFBS_Trl
2L	4843728	2L_4843728_SNP [dm3] 2L_4843728_SNP [dm6]	T	C	3.236e^-4	1	SYNONYMOUS_CODING mxt	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2804764	3L_2804764_SNP [dm3] 3L_2804764_SNP [dm6]	T	C	3.237e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb
X	16740697	X_16740697_SNP [dm3] X_16846664_SNP [dm6]	A	C	3.238e^-4	1	INTRON CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17408013	2R_17408013_SNP [dm3] 2R_21520508_SNP [dm6]	T	A	3.251e^-4	1	UTR_3_PRIME CG30289 UPSTREAM CG30288
3R	23417726	3R_23417726_SNP [dm3] 3R_27592004_SNP [dm6]	A	C	3.260e^-4	1	INTRON CG5639
3L	12028219	3L_12028219_SNP [dm3] 3L_12035119_SNP [dm6]	G	A	3.269e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
2L	1787163	2L_1787163_SNP [dm3] 2L_1787163_SNP [dm6]	G	C	3.270e^-4	1	INTERGENIC
3R	21914562	3R_21914562_SNP [dm3] 3R_26088840_SNP [dm6]	T	G	3.276e^-4	1	INTRON dys	regulatory region REDfly_CRMs
2R	17469435	2R_17469435_SNP [dm3] 2R_21581930_SNP [dm6]	C	G	3.278e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20265769	X_20265769_SNP [dm3] X_20394742_SNP [dm6]	G	T	3.285e^-4	1	UTR_5_PRIME HERC2 UPSTREAM Syx16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	26387912	3R_26387912_DEL [dm3] 3R_30562190_DEL [dm6]	AA	A	3.292e^-4	1	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	10126712	2L_10126712_SNP [dm3] 2L_10126712_SNP [dm6]	C	T	3.293e^-4	1	DOWNSTREAM CG34109 INTRON CG44153
2L	7768234	2L_7768234_SNP [dm3] 2L_7768234_SNP [dm6]	A	T	3.295e^-4	1	INTRON CG7191
X	4483691	X_4483691_SNP [dm3] X_4589658_SNP [dm6]	C	G	3.298e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	12522276	3L_12522276_SNP [dm3] 3L_12529176_SNP [dm6]	G	T	3.307e^-4	1	SYNONYMOUS_CODING nst	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	3886745	3L_3886745_SNP [dm3] 3L_3886745_SNP [dm6]	C	T	3.310e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	19853005	X_19853005_SNP [dm3] X_19958972_SNP [dm6]	C	T	3.313e^-4	1	UPSTREAM CG43784 INTRON CG12655
3R	26719975	3R_26719975_SNP [dm3] 3R_30894253_SNP [dm6]	C	A	3.328e^-4	1	NON_SYNONYMOUS_CODING Cyp4c3	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21945796	3R_21945796_SNP [dm3] 3R_26120074_SNP [dm6]	A	C	3.340e^-4	1	INTRON CG31324
X	18392009	X_18392009_SNP [dm3] X_18497976_SNP [dm6]	T	C	3.344e^-4	1	SYNONYMOUS_CODING GalNAc-T2
X	9175953	X_9175953_SNP [dm3] X_9281920_SNP [dm6]	G	A	3.351e^-4	1	INTRON c11.1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	19625870	3R_19625870_SNP [dm3] 3R_23800148_SNP [dm6]	G	A	3.351e^-4	1	NON_SYNONYMOUS_CODING mbc
X	5321473	X_5321473_SNP [dm3] X_5427440_SNP [dm6]	G	A	3.353e^-4	1	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
3L	7864830	3L_7864830_SNP [dm3] 3L_7871730_SNP [dm6]	G	A	3.356e^-4	1	INTRON CG32365
3R	20303184	3R_20303184_SNP [dm3] 3R_24477462_SNP [dm6]	T	G	3.358e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12905521	2L_12905521_SNP [dm3] 2L_12905521_SNP [dm6]	G	A	3.358e^-4	1	INTERGENIC
3R	20032684	3R_20032684_SNP [dm3] 3R_24206962_SNP [dm6]	G	A	3.362e^-4	1	INTRON twin
2L	7451999	2L_7451999_SNP [dm3] 2L_7451999_SNP [dm6]	G	A	3.380e^-4	1	UPSTREAM santa-maria DOWNSTREAM Gr28a INTERGENIC	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	25435061	3R_25435061_DEL [dm3] 3R_29609339_DEL [dm6]	CCT	C	3.385e^-4	1	DOWNSTREAM Diedel2 INTRON alph
3R	19388363	3R_19388363_SNP [dm3] 3R_23562641_SNP [dm6]	A	T	3.398e^-4	1	INTRON beat-IV
3R	19388370	3R_19388370_SNP [dm3] 3R_23562648_SNP [dm6]	G	C	3.398e^-4	1	INTRON beat-IV
2L	4015866	2L_4015866_SNP [dm3] 2L_4015866_SNP [dm6]	A	G	3.403e^-4	1	INTERGENIC
2L	10061183	2L_10061183_SNP [dm3] 2L_10061183_SNP [dm6]	A	T	3.403e^-4	1	INTRON Spn31A
X	21008141	X_21008141_SNP [dm3] X_21137114_SNP [dm6]	A	G	3.404e^-4	1	NON_SYNONYMOUS_CODING CG34120
2R	10256306	2R_10256306_SNP [dm3] 2R_14368801_SNP [dm6]	C	A	3.416e^-4	1	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
2R	18880235	2R_18880235_SNP [dm3] 2R_22992712_SNP [dm6]	T	G	3.456e^-4	1	DOWNSTREAM CG9896 INTRON twi
3L	11625989	3L_11625989_SNP [dm3] 3L_11632889_SNP [dm6]	C	G	3.463e^-4	1	INTRON CG32091 EXON CR45158
3L	2804728	3L_2804728_SNP [dm3] 3L_2804728_SNP [dm6]	C	A	3.470e^-4	1	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
X	2386428	X_2386428_SNP [dm3] X_2492395_SNP [dm6]	C	A	3.473e^-4	1	SYNONYMOUS_CODING trol
3L	4131313	3L_4131313_SNP [dm3] 3L_4131313_SNP [dm6]	A	G	3.480e^-4	1	INTRON ens
X	5114420	X_5114420_SNP [dm3] X_5220387_SNP [dm6]	T	G	3.482e^-4	1	INTRON CG15465 & 1 other
X	5114428	X_5114428_SNP [dm3] X_5220395_SNP [dm6]	T	C	3.482e^-4	1	INTRON CG15465 & 1 other
2L	5978004	2L_5978004_SNP [dm3] 2L_5978004_SNP [dm6]	C	G	3.482e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	11700686	X_11700686_SNP [dm3] X_11806653_SNP [dm6]	T	A	3.498e^-4	1	UPSTREAM Hsc70-3 INTRON Hsc70-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	17229571	2L_17229571_SNP [dm3] 2L_17229571_SNP [dm6]	G	T	3.513e^-4	1	INTRON beat-IIIc
2L	9960163	2L_9960163_SNP [dm3] 2L_9960163_SNP [dm6]	G	T	3.513e^-4	1	UTR_3_PRIME CG5850 & 1 other UPSTREAM CR43683 DOWNSTREAM CG4658 & 1 other EXON CR44872
3R	21235098	3R_21235098_SNP [dm3] 3R_25409376_SNP [dm6]	C	A	3.518e^-4	1	INTRON Fur1
2L	8708339	2L_8708339_SNP [dm3] 2L_8708339_SNP [dm6]	T	G	3.519e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
2L	12847604	2L_12847604_SNP [dm3] 2L_12847604_SNP [dm6]	T	C	3.524e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7157690	3R_7157690_SNP [dm3] 3R_11331968_SNP [dm6]	A	T	3.526e^-4	1	UPSTREAM pros INTRON pros	TF binding site mE1_TFBS_chinmo
X	3184937	X_3184937_DEL [dm3] X_3290904_DEL [dm6]	AA	G	3.528e^-4	1	UPSTREAM dnc INTRON dnc
3L	15968214	3L_15968214_SNP [dm3] 3L_15975114_SNP [dm6]	T	C	3.529e^-4	1	UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3R	26652339	3R_26652339_DEL [dm3] 3R_30826617_DEL [dm6]	TT	T	3.535e^-4	1	UTR_3_PRIME cindr DOWNSTREAM cindr INTRON cindr
2L	15564138	2L_15564138_SNP [dm3] 2L_15564138_SNP [dm6]	C	A	3.553e^-4	1	INTRON kek3
2L	10067877	2L_10067877_SNP [dm3] 2L_10067877_SNP [dm6]	C	T	3.562e^-4	1	INTRON CG44153
3L	6389756	3L_6389756_SNP [dm3] 3L_6396656_SNP [dm6]	G	A	3.574e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	2515188	X_2515188_SNP [dm3] X_2621155_SNP [dm6]	G	A	3.574e^-4	1	SYNONYMOUS_CODING Seipin DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26090218	3R_26090218_SNP [dm3] 3R_30264496_SNP [dm6]	G	T	3.586e^-4	1	INTERGENIC
2R	16324100	2R_16324100_SNP [dm3] 2R_20436595_SNP [dm6]	T	G	3.611e^-4	1	INTRON CG12484
2L	17184878	2L_17184878_SNP [dm3] 2L_17184878_SNP [dm6]	G	A	3.613e^-4	1	INTERGENIC
X	16757061	X_16757061_SNP [dm3] X_16863028_SNP [dm6]	G	A	3.617e^-4	1	INTRON CG13003
X	16427989	X_16427989_SNP [dm3] X_16533956_SNP [dm6]	A	T	3.617e^-4	1	UPSTREAM para INTERGENIC
3L	767537	3L_767537_SNP [dm3] 3L_767537_SNP [dm6]	C	T	3.618e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	8242576	X_8242576_SNP [dm3] X_8348543_SNP [dm6]	A	G	3.626e^-4	1	INTRON nAChRalpha3
2L	18293779	2L_18293779_DEL [dm3] 2L_18293779_DEL [dm6]	CTAC	C	3.630e^-4	1	DOWNSTREAM Sfp36F EXON CR43358
2L	2086030	2L_2086030_SNP [dm3] 2L_2086030_SNP [dm6]	A	G	3.642e^-4	1	INTRON dpr3
2R	18540101	2R_18540101_SNP [dm3] 2R_22652596_SNP [dm6]	A	T	3.652e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2L	16520614	2L_16520614_DEL [dm3] 2L_16520614_DEL [dm6]	TTT	T	3.652e^-4	1	UPSTREAM CG5953 INTRON CG5953	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	19228806	X_19228806_INS [dm3] X_19334773_INS [dm6]	T	TTGTTAACAAAA...	3.653e^-4	1	INTRON nAChRalpha7
3L	16337918	3L_16337918_SNP [dm3] 3L_16344818_SNP [dm6]	C	T	3.654e^-4	1	UTR_3_PRIME CG4998	TF binding site mE1_TFBS_cad
2L	19915893	2L_19915893_INS [dm3] 2L_19915893_INS [dm6]	T	TCTTAACATTTTTGCATTT...	3.654e^-4	1	INTRON sick	TF binding site mE1_TFBS_bab1
X	17274549	X_17274549_SNP [dm3] X_17380516_SNP [dm6]	G	T	3.656e^-4	1	INTERGENIC
X	5321328	X_5321328_SNP [dm3] X_5427295_SNP [dm6]	A	C	3.657e^-4	1	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
2L	18145615	2L_18145615_SNP [dm3] 2L_18145615_SNP [dm6]	A	G	3.658e^-4	1	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18159798	2L_18159798_SNP [dm3] 2L_18159798_SNP [dm6]	T	C	3.668e^-4	1	UPSTREAM CG7200 DOWNSTREAM CG42750 INTERGENIC
X	2386476	X_2386476_SNP [dm3] X_2492443_SNP [dm6]	C	G	3.682e^-4	1	INTRON trol
2R	17969761	2R_17969761_SNP [dm3] 2R_22082256_SNP [dm6]	G	A	3.683e^-4	1	SYNONYMOUS_CODING Synj	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23227281	3R_23227281_SNP [dm3] 3R_27401559_SNP [dm6]	A	G	3.689e^-4	1	INTRON side
3R	19721420	3R_19721420_SNP [dm3] 3R_23895698_SNP [dm6]	A	T	3.697e^-4	1	INTRON sba
X	4587230	X_4587230_SNP [dm3] X_4693197_SNP [dm6]	A	T	3.699e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	4587238	X_4587238_DEL [dm3] X_4693205_DEL [dm6]	ATGATTAGCTTTA...	A	3.699e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2L	20680453	2L_20680453_SNP [dm3] 2L_20680453_SNP [dm6]	C	T	3.704e^-4	1	NON_SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13415946	3L_13415946_SNP [dm3] 3L_13422846_SNP [dm6]	G	C	3.705e^-4	1	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
3L	5827494	3L_5827494_SNP [dm3] 3L_5834394_SNP [dm6]	G	T	3.706e^-4	1	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17096895	2R_17096895_SNP [dm3] 2R_21209390_SNP [dm6]	T	C	3.713e^-4	1	UTR_3_PRIME Glycogenin INTRON CG44245 & 1 other
3L	10979565	3L_10979565_SNP [dm3] 3L_10986465_SNP [dm6]	G	A	3.720e^-4	1	INTRON klu	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4583727	X_4583727_SNP [dm3] X_4689694_SNP [dm6]	C	G	3.728e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15287574	3L_15287574_SNP [dm3] 3L_15294474_SNP [dm6]	G	T	3.729e^-4	1	INTERGENIC
X	5321327	X_5321327_SNP [dm3] X_5427294_SNP [dm6]	G	C	3.736e^-4	1	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
2L	8703882	2L_8703882_DEL [dm3] 2L_8703882_DEL [dm6]	AA	A	3.738e^-4	1	INTRON Hnf4 EXON CR44992
3L	10571850	3L_10571850_SNP [dm3] 3L_10578750_SNP [dm6]	G	T	3.741e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7578188	3L_7578188_SNP [dm3] 3L_7585088_SNP [dm6]	G	A	3.772e^-4	1	SYNONYMOUS_CODING CG14838
2L	11511270	2L_11511270_SNP [dm3] 2L_11511270_SNP [dm6]	G	A	3.773e^-4	1	SYNONYMOUS_CODING CG6509	TF binding site mE1_TFBS_cad
3L	1588334	3L_1588334_SNP [dm3] 3L_1588334_SNP [dm6]	A	C	3.773e^-4	1	INTRON CG13917
3R	3715966	3R_3715966_INS [dm3] 3R_7890244_INS [dm6]	A	ACATAC	3.793e^-4	1	DOWNSTREAM CG10092 INTRON mRpS9
3L	7866215	3L_7866215_SNP [dm3] 3L_7873115_SNP [dm6]	A	G	3.796e^-4	1	INTRON CG32365	TF binding site mE1_TFBS_kn
3R	17004131	3R_17004131_SNP [dm3] 3R_21178409_SNP [dm6]	A	T	3.799e^-4	1	INTRON SNF4Agamma	TF binding site mE1_TFBS_chinmo
2R	7200326	2R_7200326_SNP [dm3] 2R_11312821_SNP [dm6]	G	A	3.802e^-4	1	INTRON nompA	TF binding site mE1_TFBS_cad
2R	12660175	2R_12660175_SNP [dm3] 2R_16772670_SNP [dm6]	C	T	3.804e^-4	1	UTR_5_PRIME unc-104 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9181087	X_9181087_SNP [dm3] X_9287054_SNP [dm6]	A	G	3.814e^-4	1	INTRON lz
2L	5455489	2L_5455489_SNP [dm3] 2L_5455489_SNP [dm6]	C	A	3.818e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22082444	3R_22082444_SNP [dm3] 3R_26256722_SNP [dm6]	A	G	3.818e^-4	1	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8979803	2L_8979803_INS [dm3] 2L_8979803_INS [dm6]	T	TT	3.829e^-4	1	UPSTREAM CG18662 INTRON CG13101
3L	11922899	3L_11922899_SNP [dm3] 3L_11929799_SNP [dm6]	C	T	3.843e^-4	1	INTRON CG44837 & 1 other
3L	12360208	3L_12360208_SNP [dm3] 3L_12367108_SNP [dm6]	T	A	3.847e^-4	1	INTERGENIC
3R	20681103	3R_20681103_SNP [dm3] 3R_24855381_SNP [dm6]	G	T	3.849e^-4	1	NON_SYNONYMOUS_CODING HdacX DOWNSTREAM nct
3L	21379467	3L_21379467_DEL [dm3] 3L_21386367_DEL [dm6]	TGCTCGGCCTGCCCGTGT...	AAA	3.853e^-4	1	INTRON rgn
2R	12660192	2R_12660192_SNP [dm3] 2R_16772687_SNP [dm6]	G	A	3.857e^-4	1	UPSTREAM unc-104 DOWNSTREAM Sod2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12660306	2R_12660306_SNP [dm3] 2R_16772801_SNP [dm6]	G	A	3.857e^-4	1	UTR_3_PRIME Sod2 UPSTREAM unc-104 DOWNSTREAM Sod2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	4491420	X_4491420_SNP [dm3] X_4597387_SNP [dm6]	A	G	3.861e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13696763	3L_13696763_SNP [dm3] 3L_13703663_SNP [dm6]	C	G	3.868e^-4	1	INTRON bru-3
X	15869534	X_15869534_SNP [dm3] X_15975501_SNP [dm6]	C	T	3.871e^-4	1	INTRON Or13a
3L	11759557	3L_11759557_INS [dm3] 3L_11766457_INS [dm6]	C	CAGGGAC	3.878e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
2R	14103868	2R_14103868_SNP [dm3] 2R_18216363_SNP [dm6]	C	G	3.880e^-4	1	INTERGENIC
2L	18820414	2L_18820414_SNP [dm3] 2L_18820414_SNP [dm6]	C	T	3.899e^-4	1	SYNONYMOUS_CODING CG17324	TF binding site mE1_TFBS_cad
3L	12590420	3L_12590420_SNP [dm3] 3L_12597320_SNP [dm6]	T	A	3.900e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sens
X	18414244	X_18414244_SNP [dm3] X_18520211_SNP [dm6]	A	G	3.903e^-4	1	UTR_3_PRIME Aats-his DOWNSTREAM CG6481 INTRON Bx
2L	9991560	2L_9991560_SNP [dm3] 2L_9991560_SNP [dm6]	C	T	3.910e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3862895	X_3862895_SNP [dm3] X_3968862_SNP [dm6]	T	C	3.912e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	21945895	3R_21945895_SNP [dm3] 3R_26120173_SNP [dm6]	T	G	3.912e^-4	1	INTRON CG31324
2L	8066510	2L_8066510_SNP [dm3] 2L_8066510_SNP [dm6]	C	T	3.917e^-4	1	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
X	4645841	X_4645841_SNP [dm3] X_4751808_SNP [dm6]	G	A	3.918e^-4	1	INTERGENIC
2R	19557689	2R_19557689_SNP [dm3] 2R_23670166_SNP [dm6]	T	C	3.920e^-4	1	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11078119	2L_11078119_SNP [dm3] 2L_11078119_SNP [dm6]	C	A	3.928e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
3L	9640427	3L_9640427_SNP [dm3] 3L_9647327_SNP [dm6]	C	G	3.939e^-4	1	INTRON fry & 1 other
3L	9640444	3L_9640444_SNP [dm3] 3L_9647344_SNP [dm6]	G	C	3.939e^-4	1	INTRON fry & 1 other
3L	5690147	3L_5690147_SNP [dm3] 3L_5697047_SNP [dm6]	C	G	3.948e^-4	1	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12735704	3L_12735704_SNP [dm3] 3L_12742604_SNP [dm6]	A	G	3.957e^-4	1	UTR_5_PRIME CG32112 INTRON CG32112
3R	7157619	3R_7157619_SNP [dm3] 3R_11331897_SNP [dm6]	C	A	3.967e^-4	1	UPSTREAM pros INTRON pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	8707553	2L_8707553_SNP [dm3] 2L_8707553_SNP [dm6]	T	G	3.977e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
2L	18149841	2L_18149841_SNP [dm3] 2L_18149841_SNP [dm6]	G	A	3.979e^-4	1	INTRON Socs36E	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3L	7064001	3L_7064001_SNP [dm3] 3L_7070901_SNP [dm6]	C	A	3.982e^-4	1	INTRON CG8641
X	16108230	X_16108230_SNP [dm3] X_16214197_SNP [dm6]	T	C	3.987e^-4	1	INTRON disco	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8922634	2R_8922634_SNP [dm3] 2R_13035129_SNP [dm6]	A	G	3.989e^-4	1	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10017488	X_10017488_SNP [dm3] X_10123455_SNP [dm6]	G	A	3.992e^-4	1	UPSTREAM snoRNA:Me18S-A627 INTRON CR44894 & 1 other
2L	1464965	2L_1464965_SNP [dm3] 2L_1464965_SNP [dm6]	A	G	3.997e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	7398285	2L_7398285_SNP [dm3] 2L_7398285_SNP [dm6]	C	T	4.010e^-4	1	UTR_5_PRIME CG5160
X	8174534	X_8174534_SNP [dm3] X_8280501_SNP [dm6]	G	A	4.018e^-4	1	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	4.018e^-4	1	INTRON CG4998	TF binding site mE1_TFBS_cad
X	16428055	X_16428055_SNP [dm3] X_16534022_SNP [dm6]	C	T	4.031e^-4	1	UPSTREAM para INTERGENIC
2R	4559876	2R_4559876_SNP [dm3] 2R_8672371_SNP [dm6]	C	G	4.037e^-4	1	UTR_5_PRIME Acsl INTRON Acsl
2R	8297163	2R_8297163_SNP [dm3] 2R_12409658_SNP [dm6]	C	A	4.051e^-4	1	UTR_3_PRIME CG30050 UPSTREAM CG33626
3R	6845327	3R_6845327_SNP [dm3] 3R_11019605_SNP [dm6]	G	A	4.056e^-4	1	INTRON CG34114
2R	18674004	2R_18674004_SNP [dm3] 2R_22786499_SNP [dm6]	A	G	4.068e^-4	1	INTRON CG42260
X	4484232	X_4484232_SNP [dm3] X_4590199_SNP [dm6]	C	T	4.070e^-4	1	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	9855279	3L_9855279_SNP [dm3] 3L_9862179_SNP [dm6]	G	T	4.073e^-4	1	NON_SYNONYMOUS_CODING iPLA2-VIA	TF binding site mE1_TFBS_sens
3L	9688872	3L_9688872_SNP [dm3] 3L_9695772_SNP [dm6]	C	A	4.097e^-4	1	UPSTREAM CG6767 DOWNSTREAM CR45121 INTRON CG6767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	1409254	2R_1409254_SNP [dm3] 2R_5521749_SNP [dm6]	T	G	4.102e^-4	1	INTRON CG30438
2R	11437670	2R_11437670_SNP [dm3] 2R_15550165_SNP [dm6]	C	T	4.106e^-4	1	UPSTREAM CG8192 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	4306390	3L_4306390_SNP [dm3] 3L_4306390_SNP [dm6]	A	T	4.124e^-4	1	INTRON dyl
2L	12905651	2L_12905651_SNP [dm3] 2L_12905651_SNP [dm6]	C	G	4.126e^-4	1	INTERGENIC
3L	19469509	3L_19469509_SNP [dm3] 3L_19476409_SNP [dm6]	C	T	4.126e^-4	1	UTR_3_PRIME CG32213 UPSTREAM CG18294 DOWNSTREAM CR32207 INTRON CR32207
3R	24924570	3R_24924570_SNP [dm3] 3R_29098848_SNP [dm6]	G	A	4.139e^-4	1	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12794076	2R_12794076_SNP [dm3] 2R_16906571_SNP [dm6]	A	G	4.148e^-4	1	INTERGENIC
X	4128751	X_4128751_SNP [dm3] X_4234718_SNP [dm6]	C	A	4.149e^-4	1	INTERGENIC
X	16740552	X_16740552_SNP [dm3] X_16846519_SNP [dm6]	A	T	4.157e^-4	1	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
2L	13732369	2L_13732369_SNP [dm3] 2L_13732369_SNP [dm6]	T	G	4.157e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_Med
2R	11133382	2R_11133382_SNP [dm3] 2R_15245877_SNP [dm6]	C	A	4.159e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7181683	X_7181683_SNP [dm3] X_7287650_SNP [dm6]	C	T	4.161e^-4	1	DOWNSTREAM unc-119 INTRON CR44357 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_sens mE1_TFBS_Ubx
2R	8452930	2R_8452930_SNP [dm3] 2R_12565425_SNP [dm6]	G	C	4.169e^-4	1	UPSTREAM CG33775 & 1 other INTERGENIC
2R	11340875	2R_11340875_SNP [dm3] 2R_15453370_SNP [dm6]	C	T	4.172e^-4	1	INTRON CG43729
2R	11934212	2R_11934212_SNP [dm3] 2R_16046707_SNP [dm6]	C	G	4.184e^-4	1	UTR_3_PRIME SP2353 UPSTREAM CG8405 DOWNSTREAM SP2353	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	18108231	2L_18108231_SNP [dm3] 2L_18108231_SNP [dm6]	A	G	4.186e^-4	1	INTERGENIC
3L	17679944	3L_17679944_SNP [dm3] 3L_17686844_SNP [dm6]	C	T	4.196e^-4	1	INTERGENIC
2R	17666417	2R_17666417_SNP [dm3] 2R_21778912_SNP [dm6]	C	G	4.196e^-4	1	INTERGENIC
2R	1517452	2R_1517452_DEL [dm3] 2R_5629947_DEL [dm6]	GAAACTGTTGGGTCATGCAG...	G	4.202e^-4	1	INTERGENIC	transposable element FlyBase
2L	17309448	2L_17309448_SNP [dm3] 2L_17309448_SNP [dm6]	G	A	4.209e^-4	1	INTERGENIC
3R	18384046	3R_18384046_SNP [dm3] 3R_22558324_SNP [dm6]	A	G	4.212e^-4	1	DOWNSTREAM CG5278 INTERGENIC
3R	21345601	3R_21345601_INS [dm3] 3R_25519879_INS [dm6]	G	GAAAACTAG	4.213e^-4	1	INTRON msi
X	4583793	X_4583793_SNP [dm3] X_4689760_SNP [dm6]	A	T	4.216e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	8112862	3L_8112862_SNP [dm3] 3L_8119762_SNP [dm6]	G	A	4.218e^-4	1	SYNONYMOUS_CODING msk
2R	12761283	2R_12761283_SNP [dm3] 2R_16873778_SNP [dm6]	G	T	4.222e^-4	1	START_GAINED CG6435 UTR_5_PRIME CG6435 DOWNSTREAM CG6421 & 2 others
X	4581171	X_4581171_SNP [dm3] X_4687138_SNP [dm6]	A	G	4.227e^-4	1	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Ubx
3L	12750461	3L_12750461_SNP [dm3] 3L_12757361_SNP [dm6]	C	T	4.233e^-4	1	SYNONYMOUS_CODING CG32113
3L	12737265	3L_12737265_SNP [dm3] 3L_12744165_SNP [dm6]	C	T	4.242e^-4	1	SYNONYMOUS_CODING CG32112
3R	18611535	3R_18611535_SNP [dm3] 3R_22785813_SNP [dm6]	A	G	4.242e^-4	1	INTRON CG7029	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16428037	X_16428037_SNP [dm3] X_16534004_SNP [dm6]	A	T	4.252e^-4	1	UPSTREAM para INTERGENIC
3R	26516912	3R_26516912_SNP [dm3] 3R_30691190_SNP [dm6]	A	C	4.255e^-4	1	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad
X	4587157	X_4587157_SNP [dm3] X_4693124_SNP [dm6]	G	T	4.256e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	8179682	X_8179682_SNP [dm3] X_8285649_SNP [dm6]	C	T	4.256e^-4	1	SYNONYMOUS_CODING nAChRalpha3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16134462	3R_16134462_SNP [dm3] 3R_20308740_SNP [dm6]	A	C	4.264e^-4	1	UPSTREAM CG42668 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11337069	2R_11337069_SNP [dm3] 2R_15449564_SNP [dm6]	C	T	4.276e^-4	1	INTRON CG43729
X	19228775	X_19228775_SNP [dm3] X_19334742_SNP [dm6]	C	T	4.276e^-4	1	INTRON nAChRalpha7
3L	18590294	3L_18590294_SNP [dm3] 3L_18597194_SNP [dm6]	C	T	4.279e^-4	1	UPSTREAM CR45390 DOWNSTREAM CR45389 INTERGENIC
X	4869517	X_4869517_SNP [dm3] X_4975484_SNP [dm6]	C	A	4.281e^-4	1	INTRON CR44833
3L	11663805	3L_11663805_SNP [dm3] 3L_11670705_SNP [dm6]	G	A	4.286e^-4	1	INTRON CG32085
2L	9560973	2L_9560973_SNP [dm3] 2L_9560973_SNP [dm6]	T	C	4.286e^-4	1	UPSTREAM jp INTRON jp
2R	20355319	2R_20355319_SNP [dm3] 2R_24467796_SNP [dm6]	T	C	4.287e^-4	1	INTRON CG13579
3L	1388936	3L_1388936_SNP [dm3] 3L_1388936_SNP [dm6]	G	A	4.296e^-4	1	INTRON Ptp61F
3L	11648455	3L_11648455_SNP [dm3] 3L_11655355_SNP [dm6]	C	T	4.308e^-4	1	INTRON CG32085
2L	5901812	2L_5901812_SNP [dm3] 2L_5901812_SNP [dm6]	A	C	4.317e^-4	1	INTERGENIC
2R	7460073	2R_7460073_DEL [dm3] 2R_11572568_DEL [dm6]	AGAAAATCACAAATAATAAT...	A	4.322e^-4	1	INTERGENIC
3R	14229618	3R_14229618_SNP [dm3] 3R_18403896_SNP [dm6]	C	T	4.324e^-4	1	SPLICE_SITE_REGION koko SYNONYMOUS_CODING koko	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	2100514	X_2100514_SNP [dm3] X_2206481_SNP [dm6]	T	C	4.327e^-4	1	INTRON msta
3L	4131317	3L_4131317_SNP [dm3] 3L_4131317_SNP [dm6]	C	A	4.328e^-4	1	INTRON ens
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	4.329e^-4	1	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4580114	X_4580114_SNP [dm3] X_4686081_SNP [dm6]	T	C	4.333e^-4	1	NON_SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19317940	2L_19317940_SNP [dm3] 2L_19317940_SNP [dm6]	T	G	4.343e^-4	1	INTERGENIC
X	6368890	X_6368890_SNP [dm3] X_6474857_SNP [dm6]	C	T	4.359e^-4	1	INTRON CG42340
2L	12157015	2L_12157015_DEL [dm3] 2L_12157015_DEL [dm6]	TATACTGA	T	4.362e^-4	1	INTRON CG31760
3L	12058827	3L_12058827_SNP [dm3] 3L_12065727_SNP [dm6]	G	T	4.370e^-4	1	UPSTREAM rols INTERGENIC
3L	3007611	3L_3007611_DEL [dm3] 3L_3007611_DEL [dm6]	CGTTCTGTGTTTGTTAC...	A	4.377e^-4	1	INTRON FMRFaR
X	10051933	X_10051933_SNP [dm3] X_10157900_SNP [dm6]	T	A	4.395e^-4	1	UPSTREAM CG43902 INTRON CR44894
3R	21851605	3R_21851605_SNP [dm3] 3R_26025883_SNP [dm6]	T	G	4.415e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26540342	3R_26540342_SNP [dm3] 3R_30714620_SNP [dm6]	C	T	4.415e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4131615	3L_4131615_SNP [dm3] 3L_4131615_SNP [dm6]	T	A	4.419e^-4	1	INTRON ens
2L	8708346	2L_8708346_SNP [dm3] 2L_8708346_SNP [dm6]	C	T	4.429e^-4	1	DOWNSTREAM CG9314 INTRON Hnf4
2R	20356107	2R_20356107_SNP [dm3] 2R_24468584_SNP [dm6]	G	C	4.445e^-4	1	INTRON CG13579
3L	11663799	3L_11663799_DEL [dm3] 3L_11670699_DEL [dm6]	AA	A	4.468e^-4	1	INTRON CG32085
3L	16337635	3L_16337635_SNP [dm3] 3L_16344535_SNP [dm6]	G	A	4.479e^-4	1	NON_SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
X	19679764	X_19679764_SNP [dm3] X_19785731_SNP [dm6]	G	T	4.505e^-4	1	DOWNSTREAM CR44885 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
X	7978741	X_7978741_SNP [dm3] X_8084708_SNP [dm6]	C	T	4.508e^-4	1	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18540092	2R_18540092_SNP [dm3] 2R_22652587_SNP [dm6]	T	G	4.518e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
2R	18540095	2R_18540095_DEL [dm3] 2R_22652590_DEL [dm6]	TCA	T	4.518e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
X	14258992	X_14258992_SNP [dm3] X_14364959_SNP [dm6]	T	A	4.527e^-4	1	INTRON dpr8	TF binding site mE1_TFBS_chinmo
2R	7099514	2R_7099514_SNP [dm3] 2R_11212009_SNP [dm6]	G	A	4.528e^-4	1	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	6975815	3R_6975815_INS [dm3] 3R_11150093_INS [dm6]	A	AA	4.534e^-4	1	DOWNSTREAM Ugt86Di INTERGENIC
3L	12028228	3L_12028228_SNP [dm3] 3L_12035128_SNP [dm6]	A	G	4.538e^-4	1	INTRON rols	TF binding site BDTNP1_TFBS_twi
3L	10218139	3L_10218139_SNP [dm3] 3L_10225039_SNP [dm6]	A	G	4.540e^-4	1	UTR_5_PRIME scramb1	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26540316	3R_26540316_SNP [dm3] 3R_30714594_SNP [dm6]	A	C	4.545e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7240823	2L_7240823_SNP [dm3] 2L_7240823_SNP [dm6]	T	C	4.548e^-4	1	UPSTREAM Ndae1 INTRON Ndae1
3R	22236021	3R_22236021_SNP [dm3] 3R_26410299_SNP [dm6]	G	A	4.551e^-4	1	INTERGENIC
3R	18062192	3R_18062192_SNP [dm3] 3R_22236470_SNP [dm6]	C	T	4.552e^-4	1	INTRON SKIP
3L	15082122	3L_15082122_SNP [dm3] 3L_15089022_SNP [dm6]	A	T	4.554e^-4	1	UPSTREAM cp309 INTRON cp309
3L	19012372	3L_19012372_SNP [dm3] 3L_19019272_SNP [dm6]	G	A	4.560e^-4	1	INTRON nkd
2L	6953773	2L_6953773_SNP [dm3] 2L_6953773_SNP [dm6]	C	T	4.590e^-4	1	DOWNSTREAM CG13775 INTRON SA
X	4581721	X_4581721_SNP [dm3] X_4687688_SNP [dm6]	G	C	4.595e^-4	1	UPSTREAM ctp & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22017980	3R_22017980_SNP [dm3] 3R_26192258_SNP [dm6]	A	G	4.596e^-4	1	INTERGENIC
2R	3095531	2R_3095531_SNP [dm3] 2R_7208026_SNP [dm6]	T	A	4.605e^-4	1	INTRON pk
3L	9367303	3L_9367303_SNP [dm3] 3L_9374203_SNP [dm6]	T	C	4.611e^-4	1	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	9367310	3L_9367310_DEL [dm3] 3L_9374210_DEL [dm6]	GAAG	G	4.611e^-4	1	UTR_5_PRIME Hsp22 UTR_3_PRIME Hsp67Bb DOWNSTREAM Hsp67Bb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14495480	3L_14495480_SNP [dm3] 3L_14502380_SNP [dm6]	A	G	4.615e^-4	1	INTRON bbg	TF binding site BDTNP1_TFBS_prd
X	3862759	X_3862759_SNP [dm3] X_3968726_SNP [dm6]	T	G	4.646e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	18139109	3R_18139109_SNP [dm3] 3R_22313387_SNP [dm6]	C	G	4.652e^-4	1	INTRON CG34377
2L	9991545	2L_9991545_SNP [dm3] 2L_9991545_SNP [dm6]	T	A	4.656e^-4	1	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12849024	3L_12849024_SNP [dm3] 3L_12855924_SNP [dm6]	C	T	4.657e^-4	1	SYNONYMOUS_CODING Ent3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13890637	3L_13890637_SNP [dm3] 3L_13897537_SNP [dm6]	A	T	4.666e^-4	1	INTRON dysc
2R	9032800	2R_9032800_SNP [dm3] 2R_13145295_SNP [dm6]	G	T	4.667e^-4	1	UTR_3_PRIME Ack-like DOWNSTREAM Ack-like INTRON Ack-like
X	15469983	X_15469983_SNP [dm3] X_15575950_SNP [dm6]	T	C	4.668e^-4	1	UPSTREAM betaNACtes5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA transposable element FlyBase
X	3862729	X_3862729_SNP [dm3] X_3968696_SNP [dm6]	T	C	4.672e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	17354180	2L_17354180_SNP [dm3] 2L_17354180_SNP [dm6]	T	C	4.695e^-4	1	UPSTREAM CR44345 EXON CR43239
2R	11335891	2R_11335891_DEL [dm3] 2R_15448386_DEL [dm6]	TGGCTAATGGTT...	T	4.697e^-4	1	INTRON CG43729
X	4260599	X_4260599_SNP [dm3] X_4366566_SNP [dm6]	T	A	4.713e^-4	1	UTR_5_PRIME CG3626 UPSTREAM mir-982 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	12750606	3L_12750606_SNP [dm3] 3L_12757506_SNP [dm6]	C	T	4.713e^-4	1	SPLICE_SITE_REGION CG32113 INTRON CG32113
3R	11344730	3R_11344730_SNP [dm3] 3R_15519008_SNP [dm6]	T	C	4.714e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13276064	2L_13276064_SNP [dm3] 2L_13276064_SNP [dm6]	T	C	4.715e^-4	1	INTRON CG44085	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	4.716e^-4	1	INTRON slo
3L	12731159	3L_12731159_SNP [dm3] 3L_12738059_SNP [dm6]	C	T	4.724e^-4	1	SYNONYMOUS_CODING Ptp69D
2L	12905480	2L_12905480_SNP [dm3] 2L_12905480_SNP [dm6]	A	C	4.728e^-4	1	INTERGENIC
3L	11759534	3L_11759534_SNP [dm3] 3L_11766434_SNP [dm6]	T	G	4.733e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	16032579	3R_16032579_SNP [dm3] 3R_20206857_SNP [dm6]	T	A	4.739e^-4	1	INTRON Nlg4	TF binding site mE1_TFBS_HSA
2R	11339584	2R_11339584_SNP [dm3] 2R_15452079_SNP [dm6]	G	C	4.741e^-4	1	INTRON CG43729
2L	5455460	2L_5455460_SNP [dm3] 2L_5455460_SNP [dm6]	C	T	4.746e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18107876	2L_18107876_SNP [dm3] 2L_18107876_SNP [dm6]	C	T	4.751e^-4	1	INTERGENIC
X	8756443	X_8756443_SNP [dm3] X_8862410_SNP [dm6]	G	A	4.762e^-4	1	INTRON CG12075	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	22673625	3R_22673625_SNP [dm3] 3R_26847903_SNP [dm6]	A	T	4.766e^-4	1	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	7074793	2L_7074793_SNP [dm3] 2L_7074793_SNP [dm6]	A	G	4.792e^-4	1	INTRON Pvf2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3389438	3R_3389438_SNP [dm3] 3R_7563716_SNP [dm6]	G	A	4.793e^-4	1	INTERGENIC
2R	19537420	2R_19537420_SNP [dm3] 2R_23649897_SNP [dm6]	A	T	4.795e^-4	1	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6503339	2L_6503339_SNP [dm3] 2L_6503339_SNP [dm6]	A	T	4.796e^-4	1	INTRON CG31637	TF binding site mE1_TFBS_Trl
2L	19122982	2L_19122982_SNP [dm3] 2L_19122982_SNP [dm6]	A	G	4.806e^-4	1	INTRON l_2_37Cc	regulatory region REDfly_CRMs
2L	19122992	2L_19122992_SNP [dm3] 2L_19122992_SNP [dm6]	A	T	4.806e^-4	1	INTRON l_2_37Cc	regulatory region REDfly_CRMs
X	10873423	X_10873423_SNP [dm3] X_10979390_SNP [dm6]	T	C	4.817e^-4	1	INTRON CG42339
X	2326700	X_2326700_SNP [dm3] X_2432667_SNP [dm6]	T	C	4.817e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	1524591	2R_1524591_SNP [dm3] 2R_5637086_SNP [dm6]	T	G	4.820e^-4	1	INTERGENIC	transposable element FlyBase
3R	17217821	3R_17217821_SNP [dm3] 3R_21392099_SNP [dm6]	G	T	4.827e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	8297194	2R_8297194_SNP [dm3] 2R_12409689_SNP [dm6]	T	A	4.831e^-4	1	UTR_3_PRIME CG30050 UPSTREAM CG33626
2L	6329123	2L_6329123_SNP [dm3] 2L_6329123_SNP [dm6]	T	G	4.835e^-4	1	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19009769	3L_19009769_SNP [dm3] 3L_19016669_SNP [dm6]	C	T	4.841e^-4	1	INTRON nkd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4952153	2R_4952153_SNP [dm3] 2R_9064648_SNP [dm6]	T	A	4.844e^-4	1	INTRON ana	regulatory region REDfly_CRMs
3L	7891199	3L_7891199_SNP [dm3] 3L_7898099_SNP [dm6]	A	G	4.863e^-4	1	SYNONYMOUS_CODING pbl
2L	7017799	2L_7017799_SNP [dm3] 2L_7017799_SNP [dm6]	G	C	4.865e^-4	1	NON_SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
2L	7017813	2L_7017813_SNP [dm3] 2L_7017813_SNP [dm6]	A	T	4.871e^-4	1	SYNONYMOUS_CODING ade3 DOWNSTREAM ade3	TF binding site mE1_TFBS_chinmo
X	16428002	X_16428002_SNP [dm3] X_16533969_SNP [dm6]	T	C	4.877e^-4	1	UPSTREAM para INTERGENIC
2L	11078120	2L_11078120_SNP [dm3] 2L_11078120_SNP [dm6]	A	T	4.885e^-4	1	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
X	3956159	X_3956159_SNP [dm3] X_4062126_SNP [dm6]	T	C	4.896e^-4	1	INTERGENIC
3L	15847816	3L_15847816_SNP [dm3] 3L_15854716_SNP [dm6]	A	G	4.908e^-4	1	INTRON pHCl
2L	19754969	2L_19754969_SNP [dm3] 2L_19754969_SNP [dm6]	A	C	4.914e^-4	1	INTRON CG10631	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14417413	3L_14417413_SNP [dm3] 3L_14424313_SNP [dm6]	C	T	4.922e^-4	1	INTRON bbg
2R	16337769	2R_16337769_SNP [dm3] 2R_20450264_SNP [dm6]	G	A	4.923e^-4	1	INTRON CG12484
2R	16274612	2R_16274612_SNP [dm3] 2R_20387107_SNP [dm6]	C	G	4.931e^-4	1	INTERGENIC
X	20867480	X_20867480_SNP [dm3] X_20996453_SNP [dm6]	A	C	4.932e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	13851785	2L_13851785_SNP [dm3] 2L_13851785_SNP [dm6]	G	A	4.932e^-4	1	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9376003	3L_9376003_SNP [dm3] 3L_9382903_SNP [dm6]	G	A	4.943e^-4	1	DOWNSTREAM Hsp23 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3646379	3L_3646379_INS [dm3] 3L_3646379_INS [dm6]	A	AGCA	4.948e^-4	1		TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	16922093	2R_16922093_SNP [dm3] 2R_21034588_SNP [dm6]	T	C	4.952e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3007980	3L_3007980_SNP [dm3] 3L_3007980_SNP [dm6]	G	A	4.956e^-4	1	INTRON FMRFaR
3R	26843385	3R_26843385_SNP [dm3] 3R_31017663_SNP [dm6]	C	G	4.967e^-4	1	UPSTREAM 5-HT7 INTERGENIC
2L	5978045	2L_5978045_SNP [dm3] 2L_5978045_SNP [dm6]	T	G	4.976e^-4	1	INTRON chic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	20867485	X_20867485_SNP [dm3] X_20996458_SNP [dm6]	A	G	4.979e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10301917	2R_10301917_SNP [dm3] 2R_14414412_SNP [dm6]	C	T	4.987e^-4	1	DOWNSTREAM Sin1 INTERGENIC	TF binding site mE1_TFBS_cad
2L	16040036	2L_16040036_SNP [dm3] 2L_16040036_SNP [dm6]	T	A	5.003e^-4	1	UTR_3_PRIME beat-Ic
X	8346544	X_8346544_SNP [dm3] X_8452511_SNP [dm6]	C	T	5.006e^-4	1	INTRON org-1	TF binding site mE1_TFBS_cad
2L	4813097	2L_4813097_SNP [dm3] 2L_4813097_SNP [dm6]	C	T	5.007e^-4	1	UTR_5_PRIME CG15629	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	3862730	X_3862730_SNP [dm3] X_3968697_SNP [dm6]	T	A	5.023e^-4	1	UPSTREAM CR45481 & 1 other DOWNSTREAM CG6414 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2R	17338366	2R_17338366_SNP [dm3] 2R_21450861_SNP [dm6]	C	G	5.025e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17338379	2R_17338379_SNP [dm3] 2R_21450874_SNP [dm6]	G	T	5.025e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5827518	3L_5827518_SNP [dm3] 3L_5834418_SNP [dm6]	A	C	5.025e^-4	1	INTRON vn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	5321430	X_5321430_SNP [dm3] X_5427397_SNP [dm6]	C	T	5.028e^-4	1	UPSTREAM CG16756 DOWNSTREAM CG4165 INTERGENIC
2L	8707347	2L_8707347_SNP [dm3] 2L_8707347_SNP [dm6]	A	G	5.030e^-4	1	UTR_3_PRIME CG9314 INTRON Hnf4
2R	1429560	2R_1429560_SNP [dm3] 2R_5542055_SNP [dm6]	A	T	5.038e^-4	1	INTRON CG30438
2L	10267319	2L_10267319_SNP [dm3] 2L_10267319_SNP [dm6]	T	G	5.043e^-4	1	DOWNSTREAM Mob3 INTRON CG4953
2R	17788418	2R_17788418_DEL [dm3] 2R_21900913_DEL [dm6]	AC	G	5.057e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17788422	2R_17788422_DEL [dm3] 2R_21900917_DEL [dm6]	AC	A	5.057e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13966886	3L_13966886_SNP [dm3] 3L_13973786_SNP [dm6]	A	T	5.057e^-4	1	UPSTREAM Hsc70-1 & 1 other DOWNSTREAM Nxf3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8673595	3L_8673595_SNP [dm3] 3L_8680495_SNP [dm6]	C	A	5.077e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	17025221	X_17025221_SNP [dm3] X_17131188_SNP [dm6]	A	T	5.080e^-4	1	INTRON CG5004
X	10733557	X_10733557_SNP [dm3] X_10839524_SNP [dm6]	A	G	5.085e^-4	1	SYNONYMOUS_CODING CG15210 INTRON sbr
3L	736461	3L_736461_SNP [dm3] 3L_736461_SNP [dm6]	G	C	5.093e^-4	1	DOWNSTREAM CR43785 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	6976364	3R_6976364_SNP [dm3] 3R_11150642_SNP [dm6]	G	A	5.108e^-4	1	DOWNSTREAM Ugt86Di INTERGENIC
X	16739826	X_16739826_SNP [dm3] X_16845793_SNP [dm6]	G	T	5.109e^-4	1	UTR_3_PRIME CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14783283	2R_14783283_SNP [dm3] 2R_18895778_SNP [dm6]	T	C	5.110e^-4	1	INTRON sano
3R	24938638	3R_24938638_SNP [dm3] 3R_29112916_SNP [dm6]	A	C	5.111e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22066062	3R_22066062_SNP [dm3] 3R_26240340_SNP [dm6]	T	C	5.111e^-4	1	INTRON CR42745
X	4582275	X_4582275_SNP [dm3] X_4688242_SNP [dm6]	T	A	5.115e^-4	1	UTR_5_PRIME ctp INTRON ctp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24154175	3R_24154175_SNP [dm3] 3R_28328453_SNP [dm6]	A	G	5.119e^-4	1	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	11930628	2R_11930628_SNP [dm3] 2R_16043123_SNP [dm6]	A	C	5.138e^-4	1	SYNONYMOUS_CODING SP2353
X	2933170	X_2933170_SNP [dm3] X_3039137_SNP [dm6]	C	A	5.148e^-4	1	INTRON kirre
2L	21909561	2L_21909561_DEL [dm3] 2L_21909561_DEL [dm6]	ATC	A	5.149e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8448438	3L_8448438_SNP [dm3] 3L_8455338_SNP [dm6]	C	G	5.158e^-4	1	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12158610	X_12158610_DEL [dm3] X_12264577_DEL [dm6]	TT	T	5.159e^-4	1	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2991978	3L_2991978_SNP [dm3] 3L_2991978_SNP [dm6]	T	C	5.163e^-4	1	INTERGENIC
3L	6151958	3L_6151958_SNP [dm3] 3L_6158858_SNP [dm6]	A	C	5.170e^-4	1	UPSTREAM Cpr65Ay INTERGENIC
X	16756831	X_16756831_SNP [dm3] X_16862798_SNP [dm6]	T	C	5.174e^-4	1	INTRON CG13003
2R	9203081	2R_9203081_SNP [dm3] 2R_13315576_SNP [dm6]	G	A	5.176e^-4	1	INTERGENIC
2L	4040248	2L_4040248_SNP [dm3] 2L_4040248_SNP [dm6]	T	G	5.179e^-4	1	INTRON ed
2R	16985889	2R_16985889_SNP [dm3] 2R_21098384_SNP [dm6]	G	A	5.182e^-4	1	SYNONYMOUS_CODING CG34396 INTRON CG34396	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	16294534	2R_16294534_SNP [dm3] 2R_20407029_SNP [dm6]	A	C	5.187e^-4	1	INTERGENIC
3R	10230835	3R_10230835_SNP [dm3] 3R_14405113_SNP [dm6]	T	C	5.197e^-4	1	SYNONYMOUS_CODING cv-c INTRON cv-c	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10541957	3L_10541957_SNP [dm3] 3L_10548857_SNP [dm6]	A	T	5.211e^-4	1	INTRON A2bp1
2L	12088992	2L_12088992_SNP [dm3] 2L_12088992_SNP [dm6]	G	T	5.217e^-4	1	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20266128	X_20266128_SNP [dm3] X_20395101_SNP [dm6]	C	A	5.232e^-4	1	SYNONYMOUS_CODING HERC2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17692847	3L_17692847_SNP [dm3] 3L_17699747_SNP [dm6]	G	A	5.237e^-4	1	INTRON Ccn
X	21918175	X_21918175_SNP [dm3] X_22516339_SNP [dm6]	A	G	5.244e^-4	1	INTRON CG17600
3L	17267264	3L_17267264_SNP [dm3] 3L_17274164_SNP [dm6]	A	G	5.245e^-4	1	DOWNSTREAM CR45436 INTERGENIC
X	12596695	X_12596695_SNP [dm3] X_12702662_SNP [dm6]	T	G	5.256e^-4	1	INTRON Smr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19650182	3R_19650182_DEL [dm3] 3R_23824460_DEL [dm6]	GG	G	5.264e^-4	1	DOWNSTREAM CR43285 INTRON CG34355
X	12906144	X_12906144_DEL [dm3] X_13012111_DEL [dm6]	GTGTGTGTGTGTGTG...	G	5.269e^-4	1	INTRON rad	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14103864	2R_14103864_SNP [dm3] 2R_18216359_SNP [dm6]	T	A	5.270e^-4	1	INTERGENIC
3R	11838197	3R_11838197_SNP [dm3] 3R_16012475_SNP [dm6]	G	A	5.274e^-4	1	UTR_5_PRIME GATAe INTRON GATAe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	16871645	2R_16871645_SNP [dm3] 2R_20984140_SNP [dm6]	G	A	5.283e^-4	1	UTR_3_PRIME CG15651 DOWNSTREAM CG9313
3R	22458075	3R_22458075_SNP [dm3] 3R_26632353_SNP [dm6]	T	C	5.285e^-4	1	SYNONYMOUS_CODING TwdlN	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12314632	2R_12314632_SNP [dm3] 2R_16427127_SNP [dm6]	C	A	5.287e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12314653	2R_12314653_DEL [dm3] 2R_16427148_DEL [dm6]	CC	C	5.287e^-4	1	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16848592	X_16848592_SNP [dm3] X_16954559_SNP [dm6]	A	G	5.295e^-4	1	SYNONYMOUS_CODING RhoGAP15B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18152648	2L_18152648_SNP [dm3] 2L_18152648_SNP [dm6]	A	G	5.298e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	8391974	3L_8391974_SNP [dm3] 3L_8398874_SNP [dm6]	G	A	5.300e^-4	1	INTRON CG7120
2R	16274512	2R_16274512_SNP [dm3] 2R_20387007_SNP [dm6]	G	C	5.306e^-4	1	INTERGENIC
3R	19329137	3R_19329137_SNP [dm3] 3R_23503415_SNP [dm6]	A	G	5.311e^-4	1	INTERGENIC
3L	9854407	3L_9854407_SNP [dm3] 3L_9861307_SNP [dm6]	A	T	5.311e^-4	1	SYNONYMOUS_CODING iPLA2-VIA
2L	11072516	2L_11072516_SNP [dm3] 2L_11072516_SNP [dm6]	G	A	5.314e^-4	1	DOWNSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	17788421	2R_17788421_SNP [dm3] 2R_21900916_SNP [dm6]	C	T	5.318e^-4	1	INTRON Fili	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13189909	3R_13189909_SNP [dm3] 3R_17364187_SNP [dm6]	C	A	5.332e^-4	1	INTRON beat-IIa
X	19780254	X_19780254_SNP [dm3] X_19886221_SNP [dm6]	T	A	5.334e^-4	1	UTR_3_PRIME amn INTRON Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	1351384	2L_1351384_SNP [dm3] 2L_1351384_SNP [dm6]	A	T	5.351e^-4	1	DOWNSTREAM CG5556 INTERGENIC
2L	9871649	2L_9871649_SNP [dm3] 2L_9871649_SNP [dm6]	G	T	5.353e^-4	1	INTRON nAChRalpha6
2L	16633942	2L_16633942_SNP [dm3] 2L_16633942_SNP [dm6]	C	T	5.355e^-4	1	INTRON CG42389
2R	18925254	2R_18925254_SNP [dm3] 2R_23037731_SNP [dm6]	C	A	5.372e^-4	1	INTRON twi & 1 other
2R	14620448	2R_14620448_SNP [dm3] 2R_18732943_SNP [dm6]	T	A	5.374e^-4	1	INTRON Hs3st-A
3R	21346062	3R_21346062_SNP [dm3] 3R_25520340_SNP [dm6]	C	G	5.379e^-4	1	INTRON msi
X	12501292	X_12501292_SNP [dm3] X_12607259_SNP [dm6]	T	G	5.384e^-4	1	UTR_3_PRIME Sec16 INTRON Sec16	TF binding site mE1_TFBS_cad
3L	8660703	3L_8660703_SNP [dm3] 3L_8667603_SNP [dm6]	T	A	5.387e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	12146740	X_12146740_SNP [dm3] X_12252707_SNP [dm6]	G	A	5.395e^-4	1	INTRON Ten-a
2L	10268048	2L_10268048_SNP [dm3] 2L_10268048_SNP [dm6]	G	T	5.407e^-4	1	SYNONYMOUS_CODING CG4953 UPSTREAM CG4957
3L	16336687	3L_16336687_SNP [dm3] 3L_16343587_SNP [dm6]	C	T	5.408e^-4	1	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	17207502	2L_17207502_SNP [dm3] 2L_17207502_SNP [dm6]	G	T	5.413e^-4	1	INTRON beat-IIIc
2R	17790271	2R_17790271_SNP [dm3] 2R_21902766_SNP [dm6]	A	G	5.432e^-4	1	INTRON Fili
3R	21914352	3R_21914352_SNP [dm3] 3R_26088630_SNP [dm6]	A	C	5.433e^-4	1	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	19463999	X_19463999_SNP [dm3] X_19569966_SNP [dm6]	T	C	5.435e^-4	1	UTR_3_PRIME Tao DOWNSTREAM car & 1 other
3L	11759438	3L_11759438_SNP [dm3] 3L_11766338_SNP [dm6]	T	G	5.440e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3L	11759447	3L_11759447_SNP [dm3] 3L_11766347_SNP [dm6]	A	T	5.440e^-4	1	UPSTREAM CG6024 DOWNSTREAM Muc68D INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sbb mE1_TFBS_Trl
3R	9278642	3R_9278642_SNP [dm3] 3R_13452920_SNP [dm6]	T	C	5.451e^-4	1	INTRON CG14372
3L	6426913	3L_6426913_SNP [dm3] 3L_6433813_SNP [dm6]	T	A	5.453e^-4	1	INTRON CG42747
3L	1182806	3L_1182806_SNP [dm3] 3L_1182806_SNP [dm6]	T	G	5.453e^-4	1	INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	16082816	X_16082816_SNP [dm3] X_16188783_SNP [dm6]	G	C	5.463e^-4	1	INTERGENIC
2R	5215978	2R_5215978_SNP [dm3] 2R_9328473_SNP [dm6]	A	T	5.470e^-4	1	INTRON CG13954 & 1 other
2L	12644697	2L_12644697_SNP [dm3] 2L_12644697_SNP [dm6]	T	C	5.486e^-4	1	INTRON Ref2
2L	3883138	2L_3883138_SNP [dm3] 2L_3883138_SNP [dm6]	G	C	5.487e^-4	1	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22065448	3R_22065448_INS [dm3] 3R_26239726_INS [dm6]	T	TT	5.487e^-4	1	INTRON CR42745
3L	14506265	3L_14506265_SNP [dm3] 3L_14513165_SNP [dm6]	A	G	5.489e^-4	1	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_bab1
2R	18880240	2R_18880240_SNP [dm3] 2R_22992717_SNP [dm6]	T	A	5.495e^-4	1	DOWNSTREAM CG9896 INTRON twi
3R	14228649	3R_14228649_SNP [dm3] 3R_18402927_SNP [dm6]	G	A	5.495e^-4	1	UPSTREAM koko & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	11930437	2R_11930437_SNP [dm3] 2R_16042932_SNP [dm6]	C	T	5.501e^-4	1	INTRON SP2353
2R	16951755	2R_16951755_SNP [dm3] 2R_21064250_SNP [dm6]	A	C	5.512e^-4	1	NON_SYNONYMOUS_CODING Cht12
3R	10596293	3R_10596293_SNP [dm3] 3R_14770571_SNP [dm6]	C	T	5.524e^-4	1	INTRON jvl
3L	5722080	3L_5722080_SNP [dm3] 3L_5728980_SNP [dm6]	G	C	5.525e^-4	1	INTRON sif
3L	14117522	3L_14117522_SNP [dm3] 3L_14124422_SNP [dm6]	C	T	5.525e^-4	1	INTRON Sox21b
3R	26054512	3R_26054512_SNP [dm3] 3R_30228790_SNP [dm6]	G	A	5.526e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	22175150	3R_22175150_SNP [dm3] 3R_26349428_SNP [dm6]	T	C	5.535e^-4	1	INTRON CG33970
2R	18033072	2R_18033072_SNP [dm3] 2R_22145567_SNP [dm6]	T	A	5.558e^-4	1	INTRON a
3L	3022471	3L_3022471_SNP [dm3] 3L_3022471_SNP [dm6]	T	C	5.563e^-4	1	INTERGENIC
X	14453592	X_14453592_SNP [dm3] X_14559559_SNP [dm6]	T	A	5.567e^-4	1	INTERGENIC
2L	21909546	2L_21909546_DEL [dm3] 2L_21909546_DEL [dm6]	ACATCGACAGACG...	A	5.576e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14642124	2L_14642124_SNP [dm3] 2L_14642124_SNP [dm6]	A	T	5.583e^-4	1	INTRON osp
3R	24938256	3R_24938256_SNP [dm3] 3R_29112534_SNP [dm6]	G	A	5.607e^-4	1	UTR_5_PRIME alpha-Man-Ib UPSTREAM CG11876	TF binding site BDTNP1_TFBS_dl
3R	24938651	3R_24938651_INS [dm3] 3R_29112929_INS [dm6]	A	ATAT	5.607e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24938653	3R_24938653_SNP [dm3] 3R_29112931_SNP [dm6]	G	T	5.607e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24938658	3R_24938658_INS [dm3] 3R_29112936_INS [dm6]	T	TTATATTCTAT...	5.607e^-4	1	UPSTREAM CG11876 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20867581	X_20867581_SNP [dm3] X_20996554_SNP [dm6]	T	C	5.610e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA transposable element FlyBase
2L	18174670	2L_18174670_SNP [dm3] 2L_18174670_SNP [dm6]	T	A	5.612e^-4	1	INTRON CG42750
2R	18870961	2R_18870961_SNP [dm3] 2R_22983438_SNP [dm6]	T	G	5.622e^-4	1	NON_SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16996968	3R_16996968_SNP [dm3] 3R_21171246_SNP [dm6]	T	A	5.623e^-4	1	INTRON SNF4Agamma
2R	16329175	2R_16329175_SNP [dm3] 2R_20441670_SNP [dm6]	T	C	5.626e^-4	1	INTRON CG12484	TF binding site BDTNP1_TFBS_twi
2R	18857990	2R_18857990_SNP [dm3] 2R_22970467_SNP [dm6]	T	A	5.628e^-4	1	INTERGENIC
X	4578529	X_4578529_SNP [dm3] X_4684496_SNP [dm6]	T	C	5.629e^-4	1	INTRON Pp2C1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5395530	2R_5395530_SNP [dm3] 2R_9508025_SNP [dm6]	A	C	5.646e^-4	1	UTR_5_PRIME brp INTRON brp	TF binding site mE1_TFBS_Trl
3R	18343476	3R_18343476_DEL [dm3] 3R_22517754_DEL [dm6]	TTG	C	5.648e^-4	1	UTR_3_PRIME Octbeta1R DOWNSTREAM Octbeta1R
2R	19656775	2R_19656775_SNP [dm3] 2R_23769252_SNP [dm6]	G	A	5.648e^-4	1	INTRON CG9850
2L	3066934	2L_3066934_SNP [dm3] 2L_3066934_SNP [dm6]	T	C	5.649e^-4	1	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12058936	3L_12058936_SNP [dm3] 3L_12065836_SNP [dm6]	A	T	5.654e^-4	1	UPSTREAM rols INTERGENIC
X	4582882	X_4582882_SNP [dm3] X_4688849_SNP [dm6]	C	G	5.660e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	13006565	3R_13006565_SNP [dm3] 3R_17180843_SNP [dm6]	G	A	5.674e^-4	1	INTRON Mur89F
X	4584286	X_4584286_SNP [dm3] X_4690253_SNP [dm6]	A	G	5.675e^-4	1	INTRON ctp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27231355	3R_27231355_SNP [dm3] 3R_31405633_SNP [dm6]	A	C	5.676e^-4	1	UTR_5_PRIME Gprk2 UPSTREAM CG11337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16527657	2L_16527657_SNP [dm3] 2L_16527657_SNP [dm6]	G	A	5.688e^-4	1	SYNONYMOUS_CODING CG5953 DOWNSTREAM mir-4943	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4560120	X_4560120_SNP [dm3] X_4666087_SNP [dm6]	T	A	5.692e^-4	1	INTRON CG3009
2R	17416408	2R_17416408_SNP [dm3] 2R_21528903_SNP [dm6]	C	T	5.702e^-4	1	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24480773	3R_24480773_SNP [dm3] 3R_28655051_SNP [dm6]	G	C	5.702e^-4	1	INTERGENIC
X	4578962	X_4578962_SNP [dm3] X_4684929_SNP [dm6]	G	A	5.705e^-4	1	INTRON Pp2C1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12644011	2L_12644011_DEL [dm3] 2L_12644011_DEL [dm6]	TA	T	5.708e^-4	1	INTRON Ref2
2L	12644014	2L_12644014_SNP [dm3] 2L_12644014_SNP [dm6]	G	A	5.708e^-4	1	INTRON Ref2
2L	9458180	2L_9458180_SNP [dm3] 2L_9458180_SNP [dm6]	G	A	5.712e^-4	1	INTRON numb
3R	24444938	3R_24444938_SNP [dm3] 3R_28619216_SNP [dm6]	C	T	5.713e^-4	1	INTRON CG10011
2L	19122991	2L_19122991_SNP [dm3] 2L_19122991_SNP [dm6]	T	A	5.715e^-4	1	INTRON l_2_37Cc	regulatory region REDfly_CRMs
3L	12508542	3L_12508542_SNP [dm3] 3L_12515442_SNP [dm6]	G	A	5.720e^-4	1	UTR_5_PRIME tral UPSTREAM sti & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	750498	3L_750498_SNP [dm3] 3L_750498_SNP [dm6]	T	C	5.732e^-4	1	INTRON hng3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco
2R	17959791	2R_17959791_SNP [dm3] 2R_22072286_SNP [dm6]	G	A	5.745e^-4	1	SYNONYMOUS_CODING CG11474 UPSTREAM CG11475	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5885556	2L_5885556_SNP [dm3] 2L_5885556_SNP [dm6]	T	C	5.749e^-4	1	UPSTREAM Sfp26Ac & 1 other DOWNSTREAM CG43185 INTERGENIC
2L	13846146	2L_13846146_SNP [dm3] 2L_13846146_SNP [dm6]	T	C	5.762e^-4	1	UPSTREAM CG8997 & 1 other INTRON CenG1A
2L	5903120	2L_5903120_SNP [dm3] 2L_5903120_SNP [dm6]	C	T	5.767e^-4	1	DOWNSTREAM CG9021 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18893732	2R_18893732_SNP [dm3] 2R_23006209_SNP [dm6]	C	T	5.778e^-4	1	INTRON twi
3L	12086473	3L_12086473_INS [dm3] 3L_12093373_INS [dm6]	G	GCACCG	5.787e^-4	1	INTERGENIC
X	19443805	X_19443805_SNP [dm3] X_19549772_SNP [dm6]	G	A	5.796e^-4	1	INTERGENIC
3R	13189904	3R_13189904_SNP [dm3] 3R_17364182_SNP [dm6]	T	G	5.799e^-4	1	INTRON beat-IIa
3R	7109145	3R_7109145_SNP [dm3] 3R_11283423_SNP [dm6]	A	T	5.800e^-4	1	INTRON CR31386
2L	8703991	2L_8703991_SNP [dm3] 2L_8703991_SNP [dm6]	T	C	5.807e^-4	1	INTRON Hnf4 & 1 other
X	21923143	X_21923143_SNP [dm3] X_22521307_SNP [dm6]	C	T	5.832e^-4	1	INTRON CG17600
3R	21914392	3R_21914392_SNP [dm3] 3R_26088670_SNP [dm6]	G	T	5.838e^-4	1	INTRON dys	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	4406980	2L_4406980_SNP [dm3] 2L_4406980_SNP [dm6]	G	C	5.843e^-4	1	NON_SYNONYMOUS_CODING CG15431	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	15168647	3R_15168647_SNP [dm3] 3R_19342925_SNP [dm6]	C	T	5.845e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	12596555	X_12596555_SNP [dm3] X_12702522_SNP [dm6]	G	A	5.868e^-4	1	INTRON Smr	TF binding site mE1_TFBS_HSA
3L	8898247	3L_8898247_SNP [dm3] 3L_8905147_SNP [dm6]	A	G	5.871e^-4	1	UPSTREAM TrpA1 DOWNSTREAM mfr INTERGENIC
2R	10256294	2R_10256294_SNP [dm3] 2R_14368789_SNP [dm6]	C	T	5.874e^-4	1	SYNONYMOUS_CODING CG34443 UPSTREAM CG34444 DOWNSTREAM CG34442
2L	4020813	2L_4020813_SNP [dm3] 2L_4020813_SNP [dm6]	C	A	5.903e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	7848509	2L_7848509_SNP [dm3] 2L_7848509_SNP [dm6]	T	G	5.913e^-4	1	SYNONYMOUS_CODING CG14535	TF binding site mE1_TFBS_cad
X	21845350	X_21845350_SNP [dm3] X_22443514_SNP [dm6]	A	T	5.915e^-4	1	UPSTREAM CG14621 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	5669142	2R_5669142_SNP [dm3] 2R_9781637_SNP [dm6]	C	A	5.916e^-4	1	INTRON CG1688	TF binding site mE1_TFBS_inv
2L	18901724	2L_18901724_SNP [dm3] 2L_18901724_SNP [dm6]	C	T	5.918e^-4	1	INTERGENIC
3L	17491244	3L_17491244_SNP [dm3] 3L_17498144_SNP [dm6]	C	G	5.920e^-4	1	INTRON Oatp74D
X	15182840	X_15182840_SNP [dm3] X_15288807_SNP [dm6]	C	T	5.923e^-4	1	UPSTREAM CR44663 INTERGENIC
3L	7075560	3L_7075560_SNP [dm3] 3L_7082460_SNP [dm6]	A	T	5.933e^-4	1	INTERGENIC
X	15110269	X_15110269_SNP [dm3] X_15216236_SNP [dm6]	G	T	5.936e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	18540093	2R_18540093_SNP [dm3] 2R_22652588_SNP [dm6]	G	T	5.937e^-4	1	UTR_3_PRIME nsr & 1 other DOWNSTREAM nsr
3L	12601951	3L_12601951_SNP [dm3] 3L_12608851_SNP [dm6]	T	A	5.937e^-4	1	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	18119439	2L_18119439_SNP [dm3] 2L_18119439_SNP [dm6]	T	A	5.944e^-4	1	UPSTREAM CG5758 INTERGENIC
2L	2835873	2L_2835873_INS [dm3] 2L_2835873_INS [dm6]	C	CC	5.953e^-4	1	DOWNSTREAM CG3119 INTRON CG3119
2L	18132702	2L_18132702_SNP [dm3] 2L_18132702_SNP [dm6]	T	G	5.959e^-4	1	INTRON kel
2R	9536314	2R_9536314_SNP [dm3] 2R_13648809_SNP [dm6]	C	T	5.964e^-4	1	INTRON fas
3R	10231023	3R_10231023_SNP [dm3] 3R_14405301_SNP [dm6]	T	C	5.964e^-4	1	UTR_5_PRIME cv-c INTRON cv-c	TF binding site mE1_TFBS_inv
3L	14296064	3L_14296064_SNP [dm3] 3L_14302964_SNP [dm6]	C	A	5.968e^-4	1	INTRON fz
2L	4301848	2L_4301848_SNP [dm3] 2L_4301848_SNP [dm6]	C	G	5.985e^-4	1	INTRON tutl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Femur_Length_T1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results