DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.789e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.02533
In_2L_t	0.06862

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2158 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	5366433	3R_5366433_SNP [dm3] 3R_9540711_SNP [dm6]	A	T	9.782e^-7	0.625	SYNONYMOUS_CODING mura	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17618570	3R_17618570_SNP [dm3] 3R_21792848_SNP [dm6]	A	G	2.277e^-6	0.625	INTRON CASK	TF binding site mE1_TFBS_cad
3R	25210851	3R_25210851_SNP [dm3] 3R_29385129_SNP [dm6]	C	A	2.327e^-6	0.625	INTRON Ptp99A
3R	5443035	3R_5443035_SNP [dm3] 3R_9617313_SNP [dm6]	A	G	2.751e^-6	0.625	INTRON CG8312
X	13351507	X_13351507_SNP [dm3] X_13457474_SNP [dm6]	T	C	3.391e^-6	0.625	NON_SYNONYMOUS_CODING CG34324 INTRON Neto
3L	14212573	3L_14212573_SNP [dm3] 3L_14219473_SNP [dm6]	C	T	4.171e^-6	0.625	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5523009	3L_5523009_SNP [dm3] 3L_5529909_SNP [dm6]	A	T	4.328e^-6	0.625	UPSTREAM Lkr INTERGENIC
3L	23141225	3L_23141225_SNP [dm3] 3L_23148125_SNP [dm6]	C	T	4.771e^-6	0.625	NON_SYNONYMOUS_CODING CG32350
3L	16012418	3L_16012418_SNP [dm3] 3L_16019318_SNP [dm6]	C	T	4.883e^-6	0.625	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16233661	3R_16233661_SNP [dm3] 3R_20407939_SNP [dm6]	A	G	4.937e^-6	0.625	UPSTREAM CG10881 & 1 other INTRON Gfrl
3R	21681623	3R_21681623_SNP [dm3] 3R_25855901_SNP [dm6]	T	C	5.088e^-6	0.625	UPSTREAM CG5890 INTERGENIC
2R	12818569	2R_12818569_SNP [dm3] 2R_16931064_SNP [dm6]	T	C	5.169e^-6	0.625	INTRON Pkc53E
3R	25210781	3R_25210781_SNP [dm3] 3R_29385059_SNP [dm6]	C	T	5.263e^-6	0.625	INTRON Ptp99A
3R	25210808	3R_25210808_INS [dm3] 3R_29385086_INS [dm6]	C	CACC	5.276e^-6	0.625	INTRON Ptp99A
3R	21681629	3R_21681629_SNP [dm3] 3R_25855907_SNP [dm6]	C	G	5.276e^-6	0.625	UPSTREAM CG5890 INTERGENIC
3R	11543653	3R_11543653_SNP [dm3] 3R_15717931_SNP [dm6]	G	C	5.336e^-6	0.625	INTERGENIC
3R	21681620	3R_21681620_SNP [dm3] 3R_25855898_SNP [dm6]	A	G	6.260e^-6	0.664	UPSTREAM CG5890 INTERGENIC
3L	14079083	3L_14079083_SNP [dm3] 3L_14085983_SNP [dm6]	T	G	6.376e^-6	0.664	DOWNSTREAM CG8100 INTERGENIC
3R	17618547	3R_17618547_SNP [dm3] 3R_21792825_SNP [dm6]	C	A	6.904e^-6	0.681	INTRON CASK	TF binding site mE1_TFBS_cad
3L	14210678	3L_14210678_INS [dm3] 3L_14217578_INS [dm6]	T	TT	9.092e^-6	0.781	UPSTREAM CG7768 INTRON nuf
3L	4516597	3L_4516597_SNP [dm3] 3L_4516597_SNP [dm6]	G	C	9.490e^-6	0.781	INTRON Tie	TF binding site mE1_TFBS_inv
3L	23033953	3L_23033953_SNP [dm3] 3L_23040853_SNP [dm6]	T	A	1.034e^-5	0.781	DOWNSTREAM nrm INTERGENIC
2R	8294112	2R_8294112_SNP [dm3] 2R_12406607_SNP [dm6]	T	C	1.084e^-5	0.781	UTR_3_PRIME Cpr49Af DOWNSTREAM Cpr49Af
3R	5393507	3R_5393507_SNP [dm3] 3R_9567785_SNP [dm6]	G	A	1.086e^-5	0.781	SYNONYMOUS_CODING CG16789	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15363310	3R_15363310_SNP [dm3] 3R_19537588_SNP [dm6]	G	A	1.104e^-5	0.781	INTRON Dys
3L	17027644	3L_17027644_SNP [dm3] 3L_17034544_SNP [dm6]	G	A	1.105e^-5	0.781	UPSTREAM CR43250 INTERGENIC
3L	4700971	3L_4700971_SNP [dm3] 3L_4700971_SNP [dm6]	C	A	1.167e^-5	0.781	INTRON RhoGEF64C
3R	10373679	3R_10373679_SNP [dm3] 3R_14547957_SNP [dm6]	C	G	1.171e^-5	0.781	INTRON Pde6
3L	14291438	3L_14291438_SNP [dm3] 3L_14298338_SNP [dm6]	C	T	1.208e^-5	0.781	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	14079086	3L_14079086_SNP [dm3] 3L_14085986_SNP [dm6]	A	C	1.314e^-5	0.821	DOWNSTREAM CG8100 INTERGENIC
3L	3726865	3L_3726865_SNP [dm3] 3L_3726865_SNP [dm6]	T	C	1.358e^-5	0.822	INTRON CG32264
3R	11543738	3R_11543738_SNP [dm3] 3R_15718016_SNP [dm6]	C	T	1.414e^-5	0.829	INTERGENIC
3L	15943355	3L_15943355_SNP [dm3] 3L_15950255_SNP [dm6]	G	A	1.587e^-5	0.849	INTRON Pka-C3
3L	15055734	3L_15055734_SNP [dm3] 3L_15062634_SNP [dm6]	T	C	1.645e^-5	0.849	UPSTREAM CG13460 & 1 other INTRON Sytbeta
3L	14210674	3L_14210674_SNP [dm3] 3L_14217574_SNP [dm6]	C	T	1.847e^-5	0.849	UPSTREAM CG7768 INTRON nuf
2L	7484924	2L_7484924_SNP [dm3] 2L_7484924_SNP [dm6]	G	C	1.857e^-5	0.849	INTRON Ziz
3R	5648003	3R_5648003_SNP [dm3] 3R_9822281_SNP [dm6]	A	G	1.894e^-5	0.849	DOWNSTREAM CG34302 INTERGENIC
3R	21311871	3R_21311871_SNP [dm3] 3R_25486149_SNP [dm6]	C	T	1.912e^-5	0.849	UTR_3_PRIME Dhap-at DOWNSTREAM CG42488 & 1 other	TF binding site mE1_TFBS_cad
3L	1414405	3L_1414405_SNP [dm3] 3L_1414405_SNP [dm6]	C	T	1.957e^-5	0.849	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14210635	3L_14210635_DEL [dm3] 3L_14217535_DEL [dm6]	GTTCTCGGTTACTAG...	G	1.998e^-5	0.849	UPSTREAM CG7768 INTRON nuf
2L	16782112	2L_16782112_SNP [dm3] 2L_16782112_SNP [dm6]	T	C	2.009e^-5	0.849	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	13102906	3L_13102906_DEL [dm3] 3L_13109806_DEL [dm6]	ATGTCCGA	A	2.031e^-5	0.849	INTERGENIC
3L	23148368	3L_23148368_SNP [dm3] 3L_23155268_SNP [dm6]	A	C	2.033e^-5	0.849	INTERGENIC	transposable element FlyBase
X	8418184	X_8418184_SNP [dm3] X_8524151_SNP [dm6]	T	A	2.083e^-5	0.849	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12612853	3L_12612853_SNP [dm3] 3L_12619753_SNP [dm6]	A	C	2.097e^-5	0.849	SYNONYMOUS_CODING caup	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18819641	3L_18819641_SNP [dm3] 3L_18826541_SNP [dm6]	T	C	2.153e^-5	0.849	SYNONYMOUS_CODING Cat	TF binding site mE1_TFBS_chinmo
3R	10249528	3R_10249528_SNP [dm3] 3R_14423806_SNP [dm6]	A	G	2.162e^-5	0.849	INTRON cv-c
2R	12830616	2R_12830616_SNP [dm3] 2R_16943111_SNP [dm6]	T	C	2.195e^-5	0.849	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E	TF binding site mE1_TFBS_inv
2L	16782062	2L_16782062_SNP [dm3] 2L_16782062_SNP [dm6]	G	A	2.282e^-5	0.849	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2R	6058050	2R_6058050_SNP [dm3] 2R_10170545_SNP [dm6]	C	T	2.386e^-5	0.849	INTRON KCNQ
2L	16781974	2L_16781974_DEL [dm3] 2L_16781974_DEL [dm6]	GG	A	2.434e^-5	0.849	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3R	21681335	3R_21681335_INS [dm3] 3R_25855613_INS [dm6]	G	GTGTGCGAGG	2.438e^-5	0.849	UPSTREAM CG5890 INTERGENIC
3R	21681337	3R_21681337_INS [dm3] 3R_25855615_INS [dm6]	A	ATAAAATTATTTTGCCTT...	2.438e^-5	0.849	UPSTREAM CG5890 INTERGENIC
3R	11006745	3R_11006745_SNP [dm3] 3R_15181023_SNP [dm6]	G	C	2.444e^-5	0.849	UPSTREAM Mf INTRON Gyc88E & 1 other
2L	8262214	2L_8262214_SNP [dm3] 2L_8262214_SNP [dm6]	G	A	2.550e^-5	0.856	SYNONYMOUS_CODING Btk29A
3L	5523021	3L_5523021_SNP [dm3] 3L_5529921_SNP [dm6]	C	T	2.659e^-5	0.856	UPSTREAM Lkr INTERGENIC
3L	4701038	3L_4701038_SNP [dm3] 3L_4701038_SNP [dm6]	C	A	2.732e^-5	0.856	INTRON RhoGEF64C
X	12088885	X_12088885_SNP [dm3] X_12194852_SNP [dm6]	T	C	2.745e^-5	0.856	INTRON Ten-a
2L	3388550	2L_3388550_SNP [dm3] 2L_3388550_SNP [dm6]	T	G	2.818e^-5	0.856	UPSTREAM Sfp23F & 2 others INTERGENIC
3R	5445890	3R_5445890_SNP [dm3] 3R_9620168_SNP [dm6]	A	G	2.856e^-5	0.856	INTRON CG8312
2R	10228102	2R_10228102_INS [dm3] 2R_14340597_INS [dm6]	A	ACCCCTGCGAA...	2.874e^-5	0.856	INTRON Shroom
3R	5727434	3R_5727434_DEL [dm3] 3R_9901712_DEL [dm6]	TGT	T	2.907e^-5	0.856	INTRON Glut4EF
2L	16782103	2L_16782103_SNP [dm3] 2L_16782103_SNP [dm6]	T	A	2.957e^-5	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	23048784	3L_23048784_SNP [dm3] 3L_23055684_SNP [dm6]	T	C	2.992e^-5	0.856	INTERGENIC
3R	21486240	3R_21486240_SNP [dm3] 3R_25660518_SNP [dm6]	G	A	3.120e^-5	0.856	INTRON Tnks	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	4880023	2L_4880023_SNP [dm3] 2L_4880023_SNP [dm6]	G	A	3.122e^-5	0.856	INTRON Cf2
3L	5534674	3L_5534674_SNP [dm3] 3L_5541574_SNP [dm6]	T	G	3.206e^-5	0.856	INTRON CG10625
2R	16090909	2R_16090909_SNP [dm3] 2R_20203404_SNP [dm6]	C	A	3.249e^-5	0.856	INTERGENIC
2R	12968077	2R_12968077_SNP [dm3] 2R_17080572_SNP [dm6]	G	A	3.360e^-5	0.856	INTRON CG30460
3L	14210684	3L_14210684_SNP [dm3] 3L_14217584_SNP [dm6]	C	A	3.363e^-5	0.856	UPSTREAM CG7768 INTRON nuf
3L	4701154	3L_4701154_SNP [dm3] 3L_4701154_SNP [dm6]	C	A	3.501e^-5	0.856	INTRON RhoGEF64C
3L	15881100	3L_15881100_SNP [dm3] 3L_15888000_SNP [dm6]	A	G	3.650e^-5	0.856	INTRON pHCl
X	15068918	X_15068918_SNP [dm3] X_15174885_SNP [dm6]	A	T	3.699e^-5	0.856	UPSTREAM CG43737 INTERGENIC
X	3142787	X_3142787_INS [dm3] X_3248754_INS [dm6]	G	GCTG	3.706e^-5	0.856	CODON_INSERTION Pig1 UPSTREAM Sgs4 INTRON dnc
3R	5727398	3R_5727398_SNP [dm3] 3R_9901676_SNP [dm6]	T	C	3.791e^-5	0.856	INTRON Glut4EF
3L	16723767	3L_16723767_SNP [dm3] 3L_16730667_SNP [dm6]	A	T	3.862e^-5	0.856	INTRON Dbp73D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21751121	3R_21751121_SNP [dm3] 3R_25925399_SNP [dm6]	C	T	4.069e^-5	0.856	INTRON CCAP-R
2L	4341634	2L_4341634_SNP [dm3] 2L_4341634_SNP [dm6]	C	T	4.129e^-5	0.856	SYNONYMOUS_CODING Atet INTRON Atet	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5502830	2L_5502830_SNP [dm3] 2L_5502830_SNP [dm6]	A	G	4.182e^-5	0.856	INTERGENIC
3L	2680513	3L_2680513_SNP [dm3] 3L_2680513_SNP [dm6]	A	C	4.205e^-5	0.856	INTRON Fife
2R	13093069	2R_13093069_SNP [dm3] 2R_17205564_SNP [dm6]	A	T	4.294e^-5	0.856	NON_SYNONYMOUS_CODING CG43237
2L	5891814	2L_5891814_SNP [dm3] 2L_5891814_SNP [dm6]	T	A	4.483e^-5	0.856	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11533149	3R_11533149_SNP [dm3] 3R_15707427_SNP [dm6]	T	C	4.526e^-5	0.856	SYNONYMOUS_CODING CG5404
3L	4377238	3L_4377238_SNP [dm3] 3L_4377238_SNP [dm6]	A	T	4.596e^-5	0.856	DOWNSTREAM CR44360 INTRON DopEcR
3R	9884122	3R_9884122_SNP [dm3] 3R_14058400_SNP [dm6]	A	C	4.762e^-5	0.856	INTRON foxo
X	8098093	X_8098093_SNP [dm3] X_8204060_SNP [dm6]	T	G	4.869e^-5	0.856	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14866127	2L_14866127_SNP [dm3] 2L_14866127_SNP [dm6]	C	T	4.882e^-5	0.856	INTERGENIC
2L	10521858	2L_10521858_SNP [dm3] 2L_10521858_SNP [dm6]	T	C	5.045e^-5	0.856	INTERGENIC
3L	10930521	3L_10930521_DEL [dm3] 3L_10937421_DEL [dm6]	AAG	A	5.142e^-5	0.856	INTERGENIC
3L	10930525	3L_10930525_INS [dm3] 3L_10937425_INS [dm6]	T	TAATTAA	5.142e^-5	0.856	INTERGENIC
2R	19599322	2R_19599322_INS [dm3] 2R_23711799_INS [dm6]	T	TC	5.233e^-5	0.856	INTERGENIC
3L	23115613	3L_23115613_SNP [dm3] 3L_23122513_SNP [dm6]	G	A	5.317e^-5	0.856	INTERGENIC	transposable element FlyBase
3R	14093531	3R_14093531_SNP [dm3] 3R_18267809_SNP [dm6]	G	C	5.323e^-5	0.856	UTR_5_PRIME CG18599	TF binding site mE1_TFBS_run
3R	5942189	3R_5942189_SNP [dm3] 3R_10116467_SNP [dm6]	C	G	5.376e^-5	0.856	INTRON CG3940
2L	8263358	2L_8263358_DEL [dm3] 2L_8263358_DEL [dm6]	TT	T	5.391e^-5	0.856	INTRON Btk29A
3R	21751105	3R_21751105_INS [dm3] 3R_25925383_INS [dm6]	T	TATA	5.395e^-5	0.856	INTRON CCAP-R
X	4715234	X_4715234_SNP [dm3] X_4821201_SNP [dm6]	A	G	5.411e^-5	0.856	INTERGENIC
3L	4701112	3L_4701112_SNP [dm3] 3L_4701112_SNP [dm6]	T	C	5.440e^-5	0.856	INTRON RhoGEF64C
3L	9007740	3L_9007740_SNP [dm3] 3L_9014640_SNP [dm6]	G	A	5.477e^-5	0.856	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	5327683	3R_5327683_SNP [dm3] 3R_9501961_SNP [dm6]	A	G	5.527e^-5	0.856	INTRON RhoL	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	20225004	2R_20225004_SNP [dm3] 2R_24337481_SNP [dm6]	T	C	5.530e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17618513	3R_17618513_SNP [dm3] 3R_21792791_SNP [dm6]	A	C	5.758e^-5	0.856	INTRON CASK	TF binding site mE1_TFBS_cad
3R	11596080	3R_11596080_SNP [dm3] 3R_15770358_SNP [dm6]	A	T	5.836e^-5	0.856	INTERGENIC
2L	13313637	2L_13313637_SNP [dm3] 2L_13313637_SNP [dm6]	C	A	5.877e^-5	0.856	INTRON CG43778	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15886584	3L_15886584_SNP [dm3] 3L_15893484_SNP [dm6]	G	A	5.932e^-5	0.856	INTRON pHCl
X	17394889	X_17394889_SNP [dm3] X_17500856_SNP [dm6]	A	T	6.035e^-5	0.856	INTRON CG43658
3L	8504649	3L_8504649_SNP [dm3] 3L_8511549_SNP [dm6]	C	A	6.211e^-5	0.856	SYNONYMOUS_CODING CG6745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16103672	2R_16103672_SNP [dm3] 2R_20216167_SNP [dm6]	T	C	6.212e^-5	0.856	INTERGENIC
2R	16103673	2R_16103673_SNP [dm3] 2R_20216168_SNP [dm6]	C	T	6.212e^-5	0.856	INTERGENIC
3L	4516627	3L_4516627_SNP [dm3] 3L_4516627_SNP [dm6]	T	A	6.334e^-5	0.856	INTRON Tie	TF binding site mE1_TFBS_inv
3R	24205174	3R_24205174_SNP [dm3] 3R_28379452_SNP [dm6]	A	G	6.403e^-5	0.856	INTERGENIC
3L	7799372	3L_7799372_SNP [dm3] 3L_7806272_SNP [dm6]	T	G	6.411e^-5	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	10038759	3R_10038759_SNP [dm3] 3R_14213037_SNP [dm6]	T	A	6.427e^-5	0.856	INTRON Dop1R1
3L	7799375	3L_7799375_SNP [dm3] 3L_7806275_SNP [dm6]	C	T	6.439e^-5	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	12285953	2L_12285953_SNP [dm3] 2L_12285953_SNP [dm6]	G	T	6.448e^-5	0.856	INTRON aret
2L	16782100	2L_16782100_SNP [dm3] 2L_16782100_SNP [dm6]	A	C	6.530e^-5	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	7799380	3L_7799380_SNP [dm3] 3L_7806280_SNP [dm6]	G	A	6.715e^-5	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	11723243	2R_11723243_SNP [dm3] 2R_15835738_SNP [dm6]	T	A	6.779e^-5	0.856	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3R	25358644	3R_25358644_SNP [dm3] 3R_29532922_SNP [dm6]	A	G	6.881e^-5	0.856	INTERGENIC
3L	14210680	3L_14210680_SNP [dm3] 3L_14217580_SNP [dm6]	T	G	6.908e^-5	0.856	UPSTREAM CG7768 INTRON nuf
3L	9777329	3L_9777329_SNP [dm3] 3L_9784229_SNP [dm6]	T	G	6.935e^-5	0.856	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7992141	2L_7992141_DEL [dm3] 2L_7992141_DEL [dm6]	TCTAGAAACTAGATA...	T	7.041e^-5	0.856	UPSTREAM pes INTRON pes	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	15363302	3R_15363302_SNP [dm3] 3R_19537580_SNP [dm6]	G	T	7.047e^-5	0.856	INTRON Dys
2R	19603305	2R_19603305_SNP [dm3] 2R_23715782_SNP [dm6]	C	T	7.049e^-5	0.856	INTRON Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12090757	X_12090757_SNP [dm3] X_12196724_SNP [dm6]	T	A	7.063e^-5	0.856	INTRON Ten-a
3R	21289246	3R_21289246_SNP [dm3] 3R_25463524_SNP [dm6]	G	A	7.153e^-5	0.856	INTRON Fur1
2L	11589781	2L_11589781_SNP [dm3] 2L_11589781_SNP [dm6]	C	T	7.206e^-5	0.856	DOWNSTREAM CR44496 INTRON kek2
3L	16012366	3L_16012366_DEL [dm3] 3L_16019266_DEL [dm6]	TTTATTG	T	7.227e^-5	0.856	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012376	3L_16012376_SNP [dm3] 3L_16019276_SNP [dm6]	G	A	7.227e^-5	0.856	UPSTREAM CR43950 INTERGENIC	insulator Insulator_Class_II.mE01 silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	16012401	3L_16012401_SNP [dm3] 3L_16019301_SNP [dm6]	A	G	7.227e^-5	0.856	UPSTREAM CR43950 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18240799	3L_18240799_SNP [dm3] 3L_18247699_SNP [dm6]	C	T	7.236e^-5	0.856	INTERGENIC
3R	9859877	3R_9859877_SNP [dm3] 3R_14034155_SNP [dm6]	T	C	7.273e^-5	0.856	SPLICE_SITE_REGION CG3061 DOWNSTREAM CG9922 INTRON CG3061	TF binding site mE1_TFBS_sens
2L	1006364	2L_1006364_SNP [dm3] 2L_1006364_SNP [dm6]	G	A	7.284e^-5	0.856	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
3L	17244979	3L_17244979_SNP [dm3] 3L_17251879_SNP [dm6]	T	C	7.344e^-5	0.856	DOWNSTREAM CG6497 INTRON CR43870
3R	5727473	3R_5727473_SNP [dm3] 3R_9901751_SNP [dm6]	A	G	7.363e^-5	0.856	INTRON Glut4EF
2R	6790620	2R_6790620_SNP [dm3] 2R_10903115_SNP [dm6]	A	G	7.401e^-5	0.856	UPSTREAM CG12943 INTERGENIC
2R	19599223	2R_19599223_SNP [dm3] 2R_23711700_SNP [dm6]	T	A	7.423e^-5	0.856	INTERGENIC
3L	19127567	3L_19127567_SNP [dm3] 3L_19134467_SNP [dm6]	T	C	7.467e^-5	0.856	INTRON CG14082
2R	9143623	2R_9143623_SNP [dm3] 2R_13256118_SNP [dm6]	T	A	7.482e^-5	0.856	UPSTREAM CR44343 & 1 other INTERGENIC
2R	14534638	2R_14534638_INS [dm3] 2R_18647133_INS [dm6]	A	ACAGATTTGCGA...	7.537e^-5	0.856	INTRON SP2637
2R	14534649	2R_14534649_SNP [dm3] 2R_18647144_SNP [dm6]	C	G	7.537e^-5	0.856	INTRON SP2637
2L	6009884	2L_6009884_SNP [dm3] 2L_6009884_SNP [dm6]	C	T	7.552e^-5	0.856	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12089012	X_12089012_SNP [dm3] X_12194979_SNP [dm6]	C	A	7.617e^-5	0.856	INTRON Ten-a
2L	8263112	2L_8263112_SNP [dm3] 2L_8263112_SNP [dm6]	T	C	7.647e^-5	0.856	INTRON Btk29A
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	7.706e^-5	0.856	INTRON CG42340
2R	19883730	2R_19883730_SNP [dm3] 2R_23996207_SNP [dm6]	G	A	7.715e^-5	0.856	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14534683	2R_14534683_SNP [dm3] 2R_18647178_SNP [dm6]	T	C	7.738e^-5	0.856	INTRON SP2637
3L	8645748	3L_8645748_SNP [dm3] 3L_8652648_SNP [dm6]	G	A	7.802e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_sens
X	12098951	X_12098951_SNP [dm3] X_12204918_SNP [dm6]	G	T	7.842e^-5	0.856	INTRON Ten-a
3L	8390200	3L_8390200_SNP [dm3] 3L_8397100_SNP [dm6]	G	A	7.866e^-5	0.856	UPSTREAM CG7120 INTRON CG7120	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	13598038	2R_13598038_SNP [dm3] 2R_17710533_SNP [dm6]	G	T	7.947e^-5	0.856	INTRON CG6424
2R	20225005	2R_20225005_SNP [dm3] 2R_24337482_SNP [dm6]	A	T	8.008e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	16293730	2L_16293730_SNP [dm3] 2L_16293730_SNP [dm6]	A	T	8.097e^-5	0.856	UPSTREAM CG13258 & 2 others INTERGENIC
X	15070523	X_15070523_DEL [dm3] X_15176490_DEL [dm6]	CCGGCTTGCGTGTATT...	C	8.133e^-5	0.856	INTRON CG43737
3L	3137763	3L_3137763_SNP [dm3] 3L_3137763_SNP [dm6]	A	T	8.136e^-5	0.856	INTRON CG11537
3L	13123693	3L_13123693_SNP [dm3] 3L_13130593_SNP [dm6]	A	G	8.389e^-5	0.856	INTERGENIC
2L	16557567	2L_16557567_SNP [dm3] 2L_16557567_SNP [dm6]	T	A	8.402e^-5	0.856	INTRON CG42389
3L	4757923	3L_4757923_SNP [dm3] 3L_4757923_SNP [dm6]	T	C	8.449e^-5	0.856	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	4757926	3L_4757926_SNP [dm3] 3L_4757926_SNP [dm6]	T	C	8.449e^-5	0.856	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	7799352	3L_7799352_SNP [dm3] 3L_7806252_SNP [dm6]	C	T	8.475e^-5	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	12938764	3L_12938764_SNP [dm3] 3L_12945664_SNP [dm6]	A	G	8.634e^-5	0.856	INTERGENIC
3R	26297454	3R_26297454_SNP [dm3] 3R_30471732_SNP [dm6]	T	A	8.654e^-5	0.856	INTRON PH4alphaEFB
2L	9844799	2L_9844799_SNP [dm3] 2L_9844799_SNP [dm6]	C	T	8.795e^-5	0.856	INTRON nAChRalpha6
2L	3939669	2L_3939669_SNP [dm3] 2L_3939669_SNP [dm6]	C	A	9.217e^-5	0.856	INTRON fred
3L	16012549	3L_16012549_SNP [dm3] 3L_16019449_SNP [dm6]	T	G	9.281e^-5	0.856	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16293805	2L_16293805_SNP [dm3] 2L_16293805_SNP [dm6]	C	T	9.318e^-5	0.856	UPSTREAM CG13258 & 2 others INTERGENIC
X	12090730	X_12090730_SNP [dm3] X_12196697_SNP [dm6]	T	A	9.348e^-5	0.856	INTRON Ten-a
3L	11283497	3L_11283497_SNP [dm3] 3L_11290397_SNP [dm6]	A	G	9.368e^-5	0.856	INTRON CG6175
3R	24204667	3R_24204667_SNP [dm3] 3R_28378945_SNP [dm6]	C	T	9.377e^-5	0.856	INTERGENIC
2L	2503989	2L_2503989_SNP [dm3] 2L_2503989_SNP [dm6]	G	A	9.436e^-5	0.856	INTERGENIC
3R	17800501	3R_17800501_DEL [dm3] 3R_21974779_DEL [dm6]	CG	C	9.469e^-5	0.856	INTRON Eip93F
2R	14303713	2R_14303713_SNP [dm3] 2R_18416208_SNP [dm6]	G	C	9.474e^-5	0.856	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4709865	3L_4709865_SNP [dm3] 3L_4709865_SNP [dm6]	T	C	9.555e^-5	0.856	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4709870	3L_4709870_SNP [dm3] 3L_4709870_SNP [dm6]	A	C	9.555e^-5	0.856	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15167084	3R_15167084_SNP [dm3] 3R_19341362_SNP [dm6]	T	C	9.571e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6082646	X_6082646_SNP [dm3] X_6188613_SNP [dm6]	G	C	9.618e^-5	0.856	INTRON Ca-alpha1T
2R	19603112	2R_19603112_SNP [dm3] 2R_23715589_SNP [dm6]	T	C	9.669e^-5	0.856	INTRON Sesn	TF binding site BDTNP1_TFBS_dl
3R	7463792	3R_7463792_SNP [dm3] 3R_11638070_SNP [dm6]	G	C	9.715e^-5	0.856	UPSTREAM Csk INTRON Csk EXON CR44137
X	5449728	X_5449728_SNP [dm3] X_5555695_SNP [dm6]	C	A	9.716e^-5	0.856	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
X	5980847	X_5980847_SNP [dm3] X_6086814_SNP [dm6]	A	G	9.719e^-5	0.856	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12992010	3R_12992010_SNP [dm3] 3R_17166288_SNP [dm6]	A	T	9.750e^-5	0.856	INTRON Mur89F
3L	23076117	3L_23076117_SNP [dm3] 3L_23083017_SNP [dm6]	T	A	9.780e^-5	0.856	INTERGENIC
3R	20706983	3R_20706983_SNP [dm3] 3R_24881261_SNP [dm6]	G	A	9.836e^-5	0.856	UTR_3_PRIME CG11089 DOWNSTREAM CG31121
X	12391762	X_12391762_SNP [dm3] X_12497729_SNP [dm6]	T	G	9.854e^-5	0.856	INTRON CG2556 EXON snoRNA:Me18S-G894
2R	19607655	2R_19607655_SNP [dm3] 2R_23720132_SNP [dm6]	C	A	9.857e^-5	0.856	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
2R	15144577	2R_15144577_SNP [dm3] 2R_19257072_SNP [dm6]	G	A	9.987e^-5	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	12563416	2R_12563416_SNP [dm3] 2R_16675911_SNP [dm6]	C	A	1.016e^-4	0.856	INTRON CG30463
2L	14866140	2L_14866140_DEL [dm3] 2L_14866140_DEL [dm6]	TA	T	1.016e^-4	0.856	INTERGENIC
3R	12954681	3R_12954681_SNP [dm3] 3R_17128959_SNP [dm6]	C	T	1.019e^-4	0.856	SYNONYMOUS_CODING CG31265 DOWNSTREAM CG31269 & 1 other
3R	9882590	3R_9882590_SNP [dm3] 3R_14056868_SNP [dm6]	G	C	1.022e^-4	0.856	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
3L	16721057	3L_16721057_SNP [dm3] 3L_16727957_SNP [dm6]	A	C	1.025e^-4	0.856	NON_SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad
X	8789253	X_8789253_DEL [dm3] X_8895220_DEL [dm6]	CC	C	1.033e^-4	0.856	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13439981	2L_13439981_SNP [dm3] 2L_13439981_SNP [dm6]	C	T	1.036e^-4	0.856	DOWNSTREAM Tehao INTRON CG42784 EXON CR45683
3R	21279837	3R_21279837_SNP [dm3] 3R_25454115_SNP [dm6]	T	C	1.039e^-4	0.856	INTRON Fur1
3R	5194775	3R_5194775_SNP [dm3] 3R_9369053_SNP [dm6]	A	C	1.040e^-4	0.856	SPLICE_SITE_DONOR FER INTRON FER
2R	2121447	2R_2121447_SNP [dm3] 2R_6233942_SNP [dm6]	T	C	1.042e^-4	0.856	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	3142641	X_3142641_SNP [dm3] X_3248608_SNP [dm6]	T	A	1.050e^-4	0.856	UTR_3_PRIME Pig1 UPSTREAM Sgs4 INTRON dnc
2R	15797275	2R_15797275_SNP [dm3] 2R_19909770_SNP [dm6]	C	G	1.051e^-4	0.856	DOWNSTREAM CR44573 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10253807	3R_10253807_SNP [dm3] 3R_14428085_SNP [dm6]	A	T	1.055e^-4	0.856	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5386507	X_5386507_SNP [dm3] X_5492474_SNP [dm6]	C	T	1.060e^-4	0.856	UTR_3_PRIME SPR DOWNSTREAM frma	TF binding site mE1_TFBS_chinmo
3R	21279810	3R_21279810_INS [dm3] 3R_25454088_INS [dm6]	G	GCACTTATAAGTGTAAG...	1.061e^-4	0.856	INTRON Fur1
3L	9283163	3L_9283163_SNP [dm3] 3L_9290063_SNP [dm6]	G	A	1.066e^-4	0.856	INTERGENIC
3L	10244313	3L_10244313_SNP [dm3] 3L_10251213_SNP [dm6]	C	T	1.072e^-4	0.856	INTERGENIC
3L	4757942	3L_4757942_SNP [dm3] 3L_4757942_SNP [dm6]	G	A	1.077e^-4	0.856	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4758014	3L_4758014_SNP [dm3] 3L_4758014_SNP [dm6]	C	G	1.077e^-4	0.856	UTR_5_PRIME CG13711 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12769377	2R_12769377_SNP [dm3] 2R_16881872_SNP [dm6]	C	T	1.082e^-4	0.856	INTRON CG8910 & 1 other	TF binding site mE1_TFBS_inv
3R	20707001	3R_20707001_SNP [dm3] 3R_24881279_SNP [dm6]	T	A	1.099e^-4	0.856	UTR_3_PRIME CG11089 DOWNSTREAM CG31121
2R	17239478	2R_17239478_SNP [dm3] 2R_21351973_SNP [dm6]	G	A	1.102e^-4	0.856	INTERGENIC
3R	5362338	3R_5362338_SNP [dm3] 3R_9536616_SNP [dm6]	G	T	1.105e^-4	0.856	UTR_3_PRIME mura
3L	3006864	3L_3006864_SNP [dm3] 3L_3006864_SNP [dm6]	G	T	1.105e^-4	0.856	INTRON FMRFaR
3L	9007755	3L_9007755_SNP [dm3] 3L_9014655_SNP [dm6]	T	A	1.106e^-4	0.856	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15627004	2L_15627004_SNP [dm3] 2L_15627004_SNP [dm6]	A	G	1.107e^-4	0.856	INTERGENIC
3R	5390782	3R_5390782_SNP [dm3] 3R_9565060_SNP [dm6]	A	G	1.107e^-4	0.856	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_sens
3R	4035212	3R_4035212_SNP [dm3] 3R_8209490_SNP [dm6]	G	A	1.108e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3L	7799586	3L_7799586_SNP [dm3] 3L_7806486_SNP [dm6]	G	C	1.110e^-4	0.856	INTRON CG32369	TF binding site mE1_TFBS_Trl
2R	7697114	2R_7697114_INS [dm3] 2R_11809609_INS [dm6]	C	CG	1.117e^-4	0.856	INTRON ths
3R	5201127	3R_5201127_SNP [dm3] 3R_9375405_SNP [dm6]	C	T	1.129e^-4	0.856	UPSTREAM FER INTRON FER	regulatory region REDfly_CRMs
2L	10993441	2L_10993441_SNP [dm3] 2L_10993441_SNP [dm6]	G	A	1.136e^-4	0.856	SPLICE_SITE_REGION CG16833 INTRON CG16833
3L	10092919	3L_10092919_SNP [dm3] 3L_10099819_SNP [dm6]	C	T	1.138e^-4	0.856	SYNONYMOUS_CODING CG42826 INTRON dpr6
3L	13847045	3L_13847045_DEL [dm3] 3L_13853945_DEL [dm6]	TT	T	1.139e^-4	0.856	SPLICE_SITE_REGION Hml INTRON Hml	TF binding site mE1_TFBS_cad
2L	9857685	2L_9857685_DEL [dm3] 2L_9857685_DEL [dm6]	AA	A	1.148e^-4	0.856	INTRON nAChRalpha6
3L	4646055	3L_4646055_SNP [dm3] 3L_4646055_SNP [dm6]	G	A	1.149e^-4	0.856	SYNONYMOUS_CODING axo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5128367	3R_5128367_SNP [dm3] 3R_9302645_SNP [dm6]	G	A	1.150e^-4	0.856	INTRON CG8861
2L	2426767	2L_2426767_SNP [dm3] 2L_2426767_SNP [dm6]	A	G	1.162e^-4	0.856	DOWNSTREAM CR44912 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
X	11512730	X_11512730_SNP [dm3] X_11618697_SNP [dm6]	C	G	1.165e^-4	0.856	SYNONYMOUS_CODING Met	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9007750	3L_9007750_SNP [dm3] 3L_9014650_SNP [dm6]	A	G	1.166e^-4	0.856	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7533468	3L_7533468_SNP [dm3] 3L_7540368_SNP [dm6]	T	C	1.167e^-4	0.856	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf
2L	7511852	2L_7511852_SNP [dm3] 2L_7511852_SNP [dm6]	C	A	1.181e^-4	0.856	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	6009719	2L_6009719_SNP [dm3] 2L_6009719_SNP [dm6]	G	A	1.183e^-4	0.856	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18259131	3L_18259131_SNP [dm3] 3L_18266031_SNP [dm6]	A	G	1.190e^-4	0.856	INTERGENIC
2R	9330075	2R_9330075_SNP [dm3] 2R_13442570_SNP [dm6]	A	G	1.192e^-4	0.856	DOWNSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_cad
3L	15884162	3L_15884162_SNP [dm3] 3L_15891062_SNP [dm6]	A	G	1.199e^-4	0.856	INTRON pHCl
2R	19607651	2R_19607651_SNP [dm3] 2R_23720128_SNP [dm6]	T	G	1.205e^-4	0.856	UPSTREAM CG18128 DOWNSTREAM CR45325 INTRON Sesn
2L	5887410	2L_5887410_SNP [dm3] 2L_5887410_SNP [dm6]	T	G	1.208e^-4	0.856	UPSTREAM CR44578 DOWNSTREAM CR44577 & 1 other EXON CR44577
3L	12538816	3L_12538816_SNP [dm3] 3L_12545716_SNP [dm6]	T	C	1.211e^-4	0.856	INTRON sowah
2R	12314741	2R_12314741_SNP [dm3] 2R_16427236_SNP [dm6]	A	G	1.217e^-4	0.856	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6463606	3R_6463606_SNP [dm3] 3R_10637884_SNP [dm6]	T	C	1.220e^-4	0.856	INTRON hth
2L	8262607	2L_8262607_SNP [dm3] 2L_8262607_SNP [dm6]	A	G	1.227e^-4	0.856	SYNONYMOUS_CODING Btk29A UTR_5_PRIME Btk29A
3R	5047337	3R_5047337_DEL [dm3] 3R_9221615_DEL [dm6]	GTAA	G	1.231e^-4	0.856	INTRON pum	TF binding site BDTNP1_TFBS_dl
3L	1848323	3L_1848323_SNP [dm3] 3L_1848323_SNP [dm6]	T	A	1.233e^-4	0.856	INTERGENIC
2R	17092769	2R_17092769_SNP [dm3] 2R_21205264_SNP [dm6]	T	C	1.235e^-4	0.856	SYNONYMOUS_CODING Glycogenin INTRON CG44245
X	12383924	X_12383924_SNP [dm3] X_12489891_SNP [dm6]	A	G	1.240e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
2L	10050730	2L_10050730_SNP [dm3] 2L_10050730_SNP [dm6]	T	C	1.240e^-4	0.856	SYNONYMOUS_CODING CG33301 UPSTREAM CR44874
2R	14305822	2R_14305822_SNP [dm3] 2R_18418317_SNP [dm6]	C	T	1.248e^-4	0.856	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	15351004	3R_15351004_SNP [dm3] 3R_19525282_SNP [dm6]	T	G	1.252e^-4	0.856	NON_SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	373028	2L_373028_SNP [dm3] 2L_373028_SNP [dm6]	A	G	1.255e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5140120	3R_5140120_SNP [dm3] 3R_9314398_SNP [dm6]	T	C	1.267e^-4	0.856	INTRON CG8861
2R	18240112	2R_18240112_DEL [dm3] 2R_22352607_DEL [dm6]	GGG	A	1.275e^-4	0.856	INTRON Liprin-gamma
2R	14141249	2R_14141249_SNP [dm3] 2R_18253744_SNP [dm6]	C	T	1.286e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	5727404	3R_5727404_SNP [dm3] 3R_9901682_SNP [dm6]	A	T	1.287e^-4	0.856	INTRON Glut4EF
3R	14148860	3R_14148860_SNP [dm3] 3R_18323138_SNP [dm6]	C	G	1.292e^-4	0.856	INTRON CG31235
2L	3942276	2L_3942276_SNP [dm3] 2L_3942276_SNP [dm6]	T	A	1.305e^-4	0.856	INTRON fred
3R	5272833	3R_5272833_SNP [dm3] 3R_9447111_SNP [dm6]	T	G	1.307e^-4	0.856	UTR_3_PRIME ps INTRON ps
3L	15033925	3L_15033925_SNP [dm3] 3L_15040825_SNP [dm6]	A	G	1.310e^-4	0.856	DOWNSTREAM Rpn12R INTRON Sytbeta	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	3543918	3R_3543918_SNP [dm3] 3R_7718196_SNP [dm6]	A	T	1.331e^-4	0.856	INTERGENIC
X	4271166	X_4271166_DEL [dm3] X_4377133_DEL [dm6]	TTC	T	1.335e^-4	0.856	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5386569	3R_5386569_SNP [dm3] 3R_9560847_SNP [dm6]	G	T	1.349e^-4	0.856	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	3111837	3L_3111837_SNP [dm3] 3L_3111837_SNP [dm6]	G	A	1.352e^-4	0.856	SYNONYMOUS_CODING CG45067 UPSTREAM CG45066
3L	23140729	3L_23140729_SNP [dm3] 3L_23147629_SNP [dm6]	C	G	1.352e^-4	0.856	DOWNSTREAM CG32350 INTERGENIC
3L	23140648	3L_23140648_SNP [dm3] 3L_23147548_SNP [dm6]	G	A	1.358e^-4	0.856	DOWNSTREAM CG32350 INTERGENIC	transposable element FlyBase
3R	5816818	3R_5816818_INS [dm3] 3R_9991096_INS [dm6]	A	ATCAGTAAAGGTCAAAGCTC...	1.359e^-4	0.856	UTR_3_PRIME Glut4EF
2R	20224971	2R_20224971_SNP [dm3] 2R_24337448_SNP [dm6]	T	G	1.360e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	15737389	3L_15737389_SNP [dm3] 3L_15744289_SNP [dm6]	G	A	1.362e^-4	0.856	INTERGENIC
2R	8931006	2R_8931006_SNP [dm3] 2R_13043501_SNP [dm6]	T	A	1.368e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h
3R	10183370	3R_10183370_SNP [dm3] 3R_14357648_SNP [dm6]	G	A	1.372e^-4	0.856	DOWNSTREAM CG31320 INTRON NK7.1
3R	15167088	3R_15167088_SNP [dm3] 3R_19341366_SNP [dm6]	T	C	1.372e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12383878	X_12383878_SNP [dm3] X_12489845_SNP [dm6]	T	C	1.375e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
3R	14059123	3R_14059123_SNP [dm3] 3R_18233401_SNP [dm6]	G	T	1.378e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
2L	1136937	2L_1136937_SNP [dm3] 2L_1136937_SNP [dm6]	A	G	1.380e^-4	0.856	INTRON CG4577	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10218393	2R_10218393_SNP [dm3] 2R_14330888_SNP [dm6]	A	C	1.392e^-4	0.856	INTRON Shroom
2L	1849559	2L_1849559_SNP [dm3] 2L_1849559_SNP [dm6]	T	C	1.403e^-4	0.856	INTRON wry
X	14685801	X_14685801_SNP [dm3] X_14791768_SNP [dm6]	C	T	1.404e^-4	0.856	NON_SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo
3R	17618700	3R_17618700_SNP [dm3] 3R_21792978_SNP [dm6]	T	A	1.406e^-4	0.856	INTRON CASK	TF binding site mE1_TFBS_cad
3L	2324621	3L_2324621_SNP [dm3] 3L_2324621_SNP [dm6]	A	T	1.410e^-4	0.856	INTRON MsR1
X	18468653	X_18468653_SNP [dm3] X_18574620_SNP [dm6]	A	C	1.411e^-4	0.856	INTERGENIC
X	5980826	X_5980826_SNP [dm3] X_6086793_SNP [dm6]	A	G	1.420e^-4	0.856	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5996662	2L_5996662_SNP [dm3] 2L_5996662_SNP [dm6]	T	C	1.430e^-4	0.856	INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16782277	2L_16782277_SNP [dm3] 2L_16782277_SNP [dm6]	A	G	1.441e^-4	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
X	16768263	X_16768263_SNP [dm3] X_16874230_SNP [dm6]	C	A	1.444e^-4	0.856	INTRON CG13003
3R	10263540	3R_10263540_SNP [dm3] 3R_14437818_SNP [dm6]	G	A	1.445e^-4	0.856	INTRON cv-c
2R	18241489	2R_18241489_SNP [dm3] 2R_22353984_SNP [dm6]	G	A	1.449e^-4	0.856	INTRON Liprin-gamma
3L	15710933	3L_15710933_SNP [dm3] 3L_15717833_SNP [dm6]	T	C	1.453e^-4	0.856	UTR_5_PRIME CG42570 DOWNSTREAM CG42571
3L	16012564	3L_16012564_SNP [dm3] 3L_16019464_SNP [dm6]	T	A	1.474e^-4	0.856	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10532690	3R_10532690_SNP [dm3] 3R_14706968_SNP [dm6]	T	C	1.474e^-4	0.856	INTRON kibra
3L	12971653	3L_12971653_DEL [dm3] 3L_12978553_DEL [dm6]	AA	A	1.482e^-4	0.856	INTERGENIC
2R	6715919	2R_6715919_SNP [dm3] 2R_10828414_SNP [dm6]	A	G	1.495e^-4	0.856	UTR_3_PRIME CG12344 DOWNSTREAM CG12325
2L	10050712	2L_10050712_SNP [dm3] 2L_10050712_SNP [dm6]	T	A	1.497e^-4	0.856	SYNONYMOUS_CODING CG33301 UPSTREAM CR44874
3L	3986843	3L_3986843_SNP [dm3] 3L_3986843_SNP [dm6]	T	C	1.497e^-4	0.856	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
3L	10241193	3L_10241193_SNP [dm3] 3L_10248093_SNP [dm6]	C	G	1.511e^-4	0.856	DOWNSTREAM CR44539 EXON CR44540
3L	23019124	3L_23019124_SNP [dm3] 3L_23026024_SNP [dm6]	T	A	1.511e^-4	0.856	NON_SYNONYMOUS_CODING nrm INTRON nrm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10224611	3R_10224611_SNP [dm3] 3R_14398889_SNP [dm6]	T	G	1.516e^-4	0.856	INTRON cv-c
2L	10849237	2L_10849237_SNP [dm3] 2L_10849237_SNP [dm6]	C	A	1.519e^-4	0.856	UPSTREAM porin & 1 other INTRON porin
X	18893116	X_18893116_SNP [dm3] X_18999083_SNP [dm6]	T	C	1.523e^-4	0.856	INTRON CG43759
3R	10183714	3R_10183714_SNP [dm3] 3R_14357992_SNP [dm6]	C	T	1.530e^-4	0.856	DOWNSTREAM CG31320 INTRON NK7.1
X	13270076	X_13270076_DEL [dm3] X_13376043_DEL [dm6]	TT	T	1.531e^-4	0.856	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	23073560	3L_23073560_SNP [dm3] 3L_23080460_SNP [dm6]	A	G	1.532e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	19599313	2R_19599313_SNP [dm3] 2R_23711790_SNP [dm6]	A	G	1.536e^-4	0.856	INTERGENIC
3L	15723844	3L_15723844_SNP [dm3] 3L_15730744_SNP [dm6]	G	T	1.546e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_z
3R	12035849	3R_12035849_SNP [dm3] 3R_16210127_SNP [dm6]	C	T	1.585e^-4	0.856	UPSTREAM CR45638 DOWNSTREAM CR45637 INTERGENIC
X	10061504	X_10061504_SNP [dm3] X_10167471_SNP [dm6]	T	A	1.585e^-4	0.856	INTRON CR44894 & 1 other
3L	848482	3L_848482_SNP [dm3] 3L_848482_SNP [dm6]	G	A	1.588e^-4	0.856	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5405158	X_5405158_SNP [dm3] X_5511125_SNP [dm6]	T	C	1.590e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3072152	X_3072152_SNP [dm3] X_3178119_SNP [dm6]	T	C	1.591e^-4	0.856	INTRON dnc
3L	6663436	3L_6663436_SNP [dm3] 3L_6670336_SNP [dm6]	G	T	1.592e^-4	0.856	INTERGENIC
X	22298530	X_22298530_SNP [dm3] X_22896694_SNP [dm6]	G	C	1.594e^-4	0.856	INTERGENIC	transposable element FlyBase
2L	8262442	2L_8262442_MNP [dm3] 2L_8262442_MNP [dm6]	TTAT	GGGG	1.599e^-4	0.856	INTRON Btk29A
3R	19948582	3R_19948582_SNP [dm3] 3R_24122860_SNP [dm6]	T	A	1.610e^-4	0.856	INTRON Rootletin	TF binding site mE1_TFBS_cad
3R	5390779	3R_5390779_SNP [dm3] 3R_9565057_SNP [dm6]	G	A	1.611e^-4	0.856	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_sens
2R	16175408	2R_16175408_SNP [dm3] 2R_20287903_SNP [dm6]	C	A	1.616e^-4	0.856	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2L	8898158	2L_8898158_SNP [dm3] 2L_8898158_SNP [dm6]	A	G	1.621e^-4	0.856	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	3650404	2R_3650404_SNP [dm3] 2R_7762899_SNP [dm6]	A	G	1.632e^-4	0.856	INTRON CG30497 & 1 other
3L	11924188	3L_11924188_SNP [dm3] 3L_11931088_SNP [dm6]	T	C	1.639e^-4	0.856	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19506344	3L_19506344_SNP [dm3] 3L_19513244_SNP [dm6]	C	T	1.641e^-4	0.856	INTERGENIC
2L	10100480	2L_10100480_SNP [dm3] 2L_10100480_SNP [dm6]	A	G	1.642e^-4	0.856	INTRON CG34109 & 1 other
3R	5727459	3R_5727459_SNP [dm3] 3R_9901737_SNP [dm6]	G	A	1.649e^-4	0.856	INTRON Glut4EF
3L	9013509	3L_9013509_SNP [dm3] 3L_9020409_SNP [dm6]	T	C	1.654e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	10690739	3L_10690739_SNP [dm3] 3L_10697639_SNP [dm6]	T	A	1.656e^-4	0.856	UPSTREAM NijA INTERGENIC
2R	4689704	2R_4689704_SNP [dm3] 2R_8802199_SNP [dm6]	C	G	1.658e^-4	0.856	INTRON sns	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10925044	3L_10925044_SNP [dm3] 3L_10931944_SNP [dm6]	T	G	1.658e^-4	0.856	INTERGENIC
3R	17370221	3R_17370221_SNP [dm3] 3R_21544499_SNP [dm6]	C	A	1.660e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	4880074	2L_4880074_SNP [dm3] 2L_4880074_SNP [dm6]	T	G	1.670e^-4	0.856	INTRON Cf2
2R	9145702	2R_9145702_SNP [dm3] 2R_13258197_SNP [dm6]	A	C	1.672e^-4	0.856	NON_SYNONYMOUS_CODING CG10799 DOWNSTREAM CG4716
2R	8307769	2R_8307769_SNP [dm3] 2R_12420264_SNP [dm6]	A	T	1.678e^-4	0.856	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	11129015	2R_11129015_SNP [dm3] 2R_15241510_SNP [dm6]	A	G	1.699e^-4	0.856	UTR_5_PRIME Fs
3L	5899376	3L_5899376_SNP [dm3] 3L_5906276_SNP [dm6]	T	G	1.702e^-4	0.856	SYNONYMOUS_CODING CG10486
2L	19968477	2L_19968477_SNP [dm3] 2L_19968477_SNP [dm6]	A	T	1.713e^-4	0.856	UPSTREAM Hf DOWNSTREAM CG43861 INTERGENIC
2L	16782267	2L_16782267_SNP [dm3] 2L_16782267_SNP [dm6]	C	A	1.715e^-4	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	18240827	3L_18240827_SNP [dm3] 3L_18247727_SNP [dm6]	C	G	1.719e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11060441	2L_11060441_SNP [dm3] 2L_11060441_SNP [dm6]	G	A	1.721e^-4	0.856	INTRON Samuel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	19602197	2R_19602197_DEL [dm3] 2R_23714674_DEL [dm6]	TC	T	1.722e^-4	0.856	SPLICE_SITE_REGION Sesn UTR_5_PRIME Sesn INTRON Sesn
2R	16812437	2R_16812437_SNP [dm3] 2R_20924932_SNP [dm6]	C	A	1.726e^-4	0.856	INTRON Rx
3L	13381400	3L_13381400_SNP [dm3] 3L_13388300_SNP [dm6]	A	C	1.729e^-4	0.856	UTR_3_PRIME Poc1 UPSTREAM CG10171
2L	9338417	2L_9338417_SNP [dm3] 2L_9338417_SNP [dm6]	T	C	1.735e^-4	0.856	INTRON Eaat1
3L	7799176	3L_7799176_SNP [dm3] 3L_7806076_SNP [dm6]	T	C	1.738e^-4	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	10973418	2L_10973418_SNP [dm3] 2L_10973418_SNP [dm6]	C	A	1.739e^-4	0.856	DOWNSTREAM abo & 1 other INTERGENIC
X	5980874	X_5980874_SNP [dm3] X_6086841_SNP [dm6]	A	G	1.740e^-4	0.856	SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12637185	2R_12637185_SNP [dm3] 2R_16749680_SNP [dm6]	G	A	1.746e^-4	0.856	UPSTREAM Acp53C14b DOWNSTREAM Acp53Ea INTERGENIC
X	3427591	X_3427591_SNP [dm3] X_3533558_SNP [dm6]	G	A	1.751e^-4	0.856	INTRON CG32791
2L	9551241	2L_9551241_SNP [dm3] 2L_9551241_SNP [dm6]	C	G	1.753e^-4	0.856	UPSTREAM jp INTRON jp
2R	19606910	2R_19606910_SNP [dm3] 2R_23719387_SNP [dm6]	A	T	1.773e^-4	0.856	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5980849	X_5980849_SNP [dm3] X_6086816_SNP [dm6]	C	T	1.783e^-4	0.856	NON_SYNONYMOUS_CODING raptor INTRON Mipp2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2860160	2L_2860160_SNP [dm3] 2L_2860160_SNP [dm6]	A	G	1.784e^-4	0.856	INTRON CG2991	TF binding site mE1_TFBS_inv
3L	8401137	3L_8401137_SNP [dm3] 3L_8408037_SNP [dm6]	T	A	1.784e^-4	0.856	DOWNSTREAM CG13667 INTRON Oseg1
X	12383914	X_12383914_SNP [dm3] X_12489881_SNP [dm6]	T	G	1.785e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
3L	12538817	3L_12538817_SNP [dm3] 3L_12545717_SNP [dm6]	C	T	1.786e^-4	0.856	INTRON sowah
2R	16990207	2R_16990207_SNP [dm3] 2R_21102702_SNP [dm6]	A	G	1.790e^-4	0.856	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
3L	23168727	3L_23168727_SNP [dm3] 3L_23175627_SNP [dm6]	A	C	1.790e^-4	0.856	INTRON CG34031	transposable element FlyBase
2R	20224965	2R_20224965_SNP [dm3] 2R_24337442_SNP [dm6]	A	T	1.790e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5771288	3L_5771288_SNP [dm3] 3L_5778188_SNP [dm6]	A	G	1.791e^-4	0.856	SYNONYMOUS_CODING Myt1 UPSTREAM vito
2L	9396746	2L_9396746_INS [dm3] 2L_9396746_INS [dm6]	C	CC	1.819e^-4	0.856	DOWNSTREAM CG4438 INTRON Shawl
X	6815446	X_6815446_SNP [dm3] X_6921413_SNP [dm6]	C	T	1.820e^-4	0.856	INTRON CG14431
2L	10973397	2L_10973397_SNP [dm3] 2L_10973397_SNP [dm6]	T	C	1.821e^-4	0.856	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
3R	4924743	3R_4924743_SNP [dm3] 3R_9099021_SNP [dm6]	A	T	1.824e^-4	0.856	INTRON pum
3R	10178376	3R_10178376_SNP [dm3] 3R_14352654_SNP [dm6]	G	T	1.829e^-4	0.856	INTRON NK7.1
3R	12918205	3R_12918205_SNP [dm3] 3R_17092483_SNP [dm6]	T	C	1.832e^-4	0.856	SYNONYMOUS_CODING cher DOWNSTREAM cal1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5798597	3R_5798597_SNP [dm3] 3R_9972875_SNP [dm6]	T	A	1.835e^-4	0.856	INTRON Glut4EF
X	6323061	X_6323061_DEL [dm3] X_6429028_DEL [dm6]	AAA	G	1.835e^-4	0.856	INTRON CG42340
3R	8400763	3R_8400763_SNP [dm3] 3R_12575041_SNP [dm6]	C	G	1.836e^-4	0.856	INTRON Octbeta2R
2L	9764699	2L_9764699_SNP [dm3] 2L_9764699_SNP [dm6]	C	G	1.838e^-4	0.856	DOWNSTREAM ppk18 INTRON und	TF binding site mE1_TFBS_cad
3L	17713204	3L_17713204_SNP [dm3] 3L_17720104_SNP [dm6]	G	T	1.839e^-4	0.856	UPSTREAM CheB74a INTRON Ccn	TF binding site mE1_TFBS_kn
2R	3700007	2R_3700007_SNP [dm3] 2R_7812502_SNP [dm6]	C	T	1.844e^-4	0.856	UPSTREAM CG1882 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6933454	3R_6933454_SNP [dm3] 3R_11107732_SNP [dm6]	A	T	1.850e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6083343	X_6083343_SNP [dm3] X_6189310_SNP [dm6]	G	T	1.853e^-4	0.856	INTRON Ca-alpha1T
X	5290043	X_5290043_SNP [dm3] X_5396010_SNP [dm6]	T	C	1.854e^-4	0.856	INTRON SK
3L	15047719	3L_15047719_SNP [dm3] 3L_15054619_SNP [dm6]	T	C	1.856e^-4	0.856	UPSTREAM CG13463 & 1 other INTRON Sytbeta
3L	15921193	3L_15921193_SNP [dm3] 3L_15928093_SNP [dm6]	T	G	1.858e^-4	0.856	SYNONYMOUS_CODING Pka-C3
3R	3856749	3R_3856749_SNP [dm3] 3R_8031027_SNP [dm6]	C	T	1.858e^-4	0.856	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
3R	15642999	3R_15642999_SNP [dm3] 3R_19817277_SNP [dm6]	G	A	1.867e^-4	0.856	INTRON bnl	TF binding site BDTNP1_TFBS_twi
3R	18409515	3R_18409515_SNP [dm3] 3R_22583793_SNP [dm6]	G	A	1.879e^-4	0.856	NON_SYNONYMOUS_CODING CG33107 UPSTREAM Dph5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	12314754	2R_12314754_SNP [dm3] 2R_16427249_SNP [dm6]	G	C	1.886e^-4	0.856	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20976353	3R_20976353_SNP [dm3] 3R_25150631_SNP [dm6]	G	A	1.886e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14388141	3L_14388141_SNP [dm3] 3L_14395041_SNP [dm6]	T	A	1.886e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	16360848	X_16360848_SNP [dm3] X_16466815_SNP [dm6]	A	G	1.887e^-4	0.856	INTRON para
2R	16175596	2R_16175596_SNP [dm3] 2R_20288091_SNP [dm6]	C	T	1.890e^-4	0.856	SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
X	6323085	X_6323085_SNP [dm3] X_6429052_SNP [dm6]	C	G	1.890e^-4	0.856	INTRON CG42340
3R	10183658	3R_10183658_SNP [dm3] 3R_14357936_SNP [dm6]	A	T	1.892e^-4	0.856	DOWNSTREAM CG31320 INTRON NK7.1
3L	15943604	3L_15943604_SNP [dm3] 3L_15950504_SNP [dm6]	C	A	1.896e^-4	0.856	INTRON Pka-C3
2R	10218404	2R_10218404_SNP [dm3] 2R_14330899_SNP [dm6]	A	T	1.898e^-4	0.856	INTRON Shroom
2L	19837070	2L_19837070_DEL [dm3] 2L_19837070_DEL [dm6]	GT	G	1.898e^-4	0.856	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9821577	X_9821577_SNP [dm3] X_9927544_SNP [dm6]	C	A	1.912e^-4	0.856	DOWNSTREAM Idgf4 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	23080222	3L_23080222_SNP [dm3] 3L_23087122_SNP [dm6]	A	G	1.914e^-4	0.856	INTERGENIC	transposable element FlyBase
X	12391756	X_12391756_SNP [dm3] X_12497723_SNP [dm6]	G	A	1.918e^-4	0.856	INTRON CG2556 EXON snoRNA:Me18S-G894
2R	16975830	2R_16975830_SNP [dm3] 2R_21088325_SNP [dm6]	A	C	1.921e^-4	0.856	DOWNSTREAM Rbpn-5 & 1 other INTRON Treh
3R	15604808	3R_15604808_SNP [dm3] 3R_19779086_SNP [dm6]	C	T	1.921e^-4	0.856	SYNONYMOUS_CODING CG11391	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14094242	3R_14094242_SNP [dm3] 3R_18268520_SNP [dm6]	T	C	1.938e^-4	0.856	INTRON CG18599
3L	8667579	3L_8667579_SNP [dm3] 3L_8674479_SNP [dm6]	C	T	1.943e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8992501	3L_8992501_SNP [dm3] 3L_8999401_SNP [dm6]	T	G	1.950e^-4	0.856	SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
3R	5390836	3R_5390836_SNP [dm3] 3R_9565114_SNP [dm6]	A	G	1.953e^-4	0.856	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_sens
2R	14640040	2R_14640040_SNP [dm3] 2R_18752535_SNP [dm6]	G	A	1.964e^-4	0.856	UTR_3_PRIME Hs3st-A
3L	8675181	3L_8675181_SNP [dm3] 3L_8682081_SNP [dm6]	G	A	1.965e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	4751644	3L_4751644_INS [dm3] 3L_4751644_INS [dm6]	G	GATCCAGCGG	1.968e^-4	0.856	DOWNSTREAM CG12493 INTRON RhoGEF64C
3R	4600226	3R_4600226_SNP [dm3] 3R_8774504_SNP [dm6]	C	A	1.969e^-4	0.856	UTR_3_PRIME Pif1B & 1 other DOWNSTREAM CG34301
2L	11305358	2L_11305358_SNP [dm3] 2L_11305358_SNP [dm6]	G	A	1.974e^-4	0.856	INTERGENIC
2R	7688455	2R_7688455_SNP [dm3] 2R_11800950_SNP [dm6]	C	T	1.974e^-4	0.856	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9827043	3R_9827043_SNP [dm3] 3R_14001321_SNP [dm6]	C	T	1.977e^-4	0.856	INTRON rdx	TF binding site mE1_TFBS_cad
3L	15937134	3L_15937134_SNP [dm3] 3L_15944034_SNP [dm6]	T	G	1.979e^-4	0.856	INTRON Pka-C3
3R	10253871	3R_10253871_SNP [dm3] 3R_14428149_SNP [dm6]	A	C	1.982e^-4	0.856	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5852814	3R_5852814_SNP [dm3] 3R_10027092_SNP [dm6]	G	A	1.984e^-4	0.856	INTRON Mical
2R	15587661	2R_15587661_SNP [dm3] 2R_19700156_SNP [dm6]	T	C	1.988e^-4	0.856	UTR_3_PRIME Obp56c UPSTREAM Obp56b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	23170479	3L_23170479_SNP [dm3] 3L_23177379_SNP [dm6]	A	G	1.994e^-4	0.856	INTRON CG34031	transposable element FlyBase
2L	18889752	2L_18889752_SNP [dm3] 2L_18889752_SNP [dm6]	G	A	2.002e^-4	0.856	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
2L	10973384	2L_10973384_SNP [dm3] 2L_10973384_SNP [dm6]	G	C	2.002e^-4	0.856	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
2L	319309	2L_319309_SNP [dm3] 2L_319309_SNP [dm6]	G	C	2.003e^-4	0.856	UPSTREAM CG11912 DOWNSTREAM CG11911 INTRON Plc21C
3R	5390686	3R_5390686_SNP [dm3] 3R_9564964_SNP [dm6]	C	T	2.008e^-4	0.856	SYNONYMOUS_CODING Vps45	TF binding site mE1_TFBS_sens
3R	5152390	3R_5152390_SNP [dm3] 3R_9326668_SNP [dm6]	G	T	2.008e^-4	0.856	INTRON CG8861
2R	3698055	2R_3698055_SNP [dm3] 2R_7810550_SNP [dm6]	A	G	2.009e^-4	0.856	SYNONYMOUS_CODING CG1550 DOWNSTREAM sax	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19599724	2R_19599724_SNP [dm3] 2R_23712201_SNP [dm6]	G	A	2.011e^-4	0.856	INTERGENIC
2R	8659047	2R_8659047_SNP [dm3] 2R_12771542_SNP [dm6]	G	A	2.015e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	12383903	X_12383903_SNP [dm3] X_12489870_SNP [dm6]	A	T	2.015e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
2R	2741373	2R_2741373_SNP [dm3] 2R_6853868_SNP [dm6]	T	G	2.017e^-4	0.856	INTERGENIC
X	22298874	X_22298874_SNP [dm3] X_22897038_SNP [dm6]	G	A	2.018e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	7697004	2R_7697004_SNP [dm3] 2R_11809499_SNP [dm6]	A	C	2.021e^-4	0.856	INTRON ths
2R	7697014	2R_7697014_DEL [dm3] 2R_11809509_DEL [dm6]	CATTAAATTTTCGCTTTA...	C	2.021e^-4	0.856	INTRON ths
2R	7697051	2R_7697051_SNP [dm3] 2R_11809546_SNP [dm6]	A	C	2.021e^-4	0.856	INTRON ths
2R	7697052	2R_7697052_INS [dm3] 2R_11809547_INS [dm6]	T	TTAC	2.021e^-4	0.856	INTRON ths
3L	848479	3L_848479_SNP [dm3] 3L_848479_SNP [dm6]	G	C	2.039e^-4	0.856	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4521824	X_4521824_SNP [dm3] X_4627791_SNP [dm6]	G	A	2.050e^-4	0.856	DOWNSTREAM peb INTRON CG12184
2L	2503516	2L_2503516_SNP [dm3] 2L_2503516_SNP [dm6]	C	A	2.052e^-4	0.856	INTERGENIC
3R	21289244	3R_21289244_SNP [dm3] 3R_25463522_SNP [dm6]	G	T	2.055e^-4	0.856	INTRON Fur1
3L	11586360	3L_11586360_SNP [dm3] 3L_11593260_SNP [dm6]	A	G	2.058e^-4	0.856	UPSTREAM CR45442 & 1 other DOWNSTREAM CR45443 & 1 other INTERGENIC
X	6081617	X_6081617_SNP [dm3] X_6187584_SNP [dm6]	A	T	2.062e^-4	0.856	INTRON Ca-alpha1T
2R	17074656	2R_17074656_SNP [dm3] 2R_21187151_SNP [dm6]	G	T	2.069e^-4	0.856	NON_SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
X	5290050	X_5290050_SNP [dm3] X_5396017_SNP [dm6]	A	C	2.070e^-4	0.856	INTRON SK
3L	12538813	3L_12538813_SNP [dm3] 3L_12545713_SNP [dm6]	C	T	2.079e^-4	0.856	INTRON sowah
3L	9006388	3L_9006388_SNP [dm3] 3L_9013288_SNP [dm6]	G	C	2.084e^-4	0.856	NON_SYNONYMOUS_CODING Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	15159634	2L_15159634_SNP [dm3] 2L_15159634_SNP [dm6]	G	C	2.090e^-4	0.856	EXON CR44771	TF binding site mE1_TFBS_cad
3L	10842341	3L_10842341_SNP [dm3] 3L_10849241_SNP [dm6]	T	C	2.092e^-4	0.856	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	16231815	3R_16231815_SNP [dm3] 3R_20406093_SNP [dm6]	T	A	2.097e^-4	0.856	DOWNSTREAM CG4335 INTRON Gfrl
3L	18364980	3L_18364980_SNP [dm3] 3L_18371880_SNP [dm6]	C	T	2.101e^-4	0.856	INTERGENIC
3L	14695826	3L_14695826_SNP [dm3] 3L_14702726_SNP [dm6]	G	A	2.102e^-4	0.856	INTRON ome
X	771004	X_771004_SNP [dm3] X_876971_SNP [dm6]	T	A	2.105e^-4	0.856	DOWNSTREAM CG11664 INTRON CG43867
X	14808199	X_14808199_SNP [dm3] X_14914166_SNP [dm6]	C	T	2.109e^-4	0.856	UPSTREAM CG12398 INTRON Flo2
2L	5801146	2L_5801146_SNP [dm3] 2L_5801146_SNP [dm6]	G	T	2.112e^-4	0.856	SYNONYMOUS_CODING CG14005 UPSTREAM CG9171	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13003025	3L_13003025_SNP [dm3] 3L_13009925_SNP [dm6]	T	C	2.113e^-4	0.856	DOWNSTREAM CG14117 INTRON CG11261
3R	10253271	3R_10253271_SNP [dm3] 3R_14427549_SNP [dm6]	C	T	2.131e^-4	0.856	NON_SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5386540	3R_5386540_SNP [dm3] 3R_9560818_SNP [dm6]	C	T	2.132e^-4	0.856	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2L	4880079	2L_4880079_SNP [dm3] 2L_4880079_SNP [dm6]	A	T	2.138e^-4	0.856	INTRON Cf2
2R	18500302	2R_18500302_SNP [dm3] 2R_22612797_SNP [dm6]	G	A	2.141e^-4	0.856	SPLICE_SITE_REGION CG4329 INTRON CG4329
2L	9551242	2L_9551242_SNP [dm3] 2L_9551242_SNP [dm6]	G	T	2.145e^-4	0.856	UPSTREAM jp INTRON jp
2R	19607409	2R_19607409_SNP [dm3] 2R_23719886_SNP [dm6]	C	A	2.146e^-4	0.856	START_GAINED CG18128 UTR_5_PRIME CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3L	19384110	3L_19384110_SNP [dm3] 3L_19391010_SNP [dm6]	C	T	2.153e^-4	0.856	DOWNSTREAM ms_3_76Ba INTRON CG32206	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3L	16137545	3L_16137545_SNP [dm3] 3L_16144445_SNP [dm6]	A	C	2.158e^-4	0.856	UPSTREAM CG5151 & 1 other INTRON CG5151
3R	4893888	3R_4893888_SNP [dm3] 3R_9068166_SNP [dm6]	T	A	2.167e^-4	0.856	UTR_3_PRIME pum	TF binding site mE1_TFBS_D
3L	9551695	3L_9551695_SNP [dm3] 3L_9558595_SNP [dm6]	T	C	2.172e^-4	0.856	INTRON CG42673
2L	6020191	2L_6020191_SNP [dm3] 2L_6020191_SNP [dm6]	A	G	2.184e^-4	0.856	UPSTREAM H2.0 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14865075	2L_14865075_SNP [dm3] 2L_14865075_SNP [dm6]	T	C	2.201e^-4	0.856	INTERGENIC
X	12383916	X_12383916_SNP [dm3] X_12489883_SNP [dm6]	G	A	2.202e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
2R	17158081	2R_17158081_SNP [dm3] 2R_21270576_SNP [dm6]	A	T	2.206e^-4	0.856	INTRON Rgk3
2L	2935970	2L_2935970_SNP [dm3] 2L_2935970_SNP [dm6]	G	T	2.213e^-4	0.856	INTRON lilli
3L	995863	3L_995863_SNP [dm3] 3L_995863_SNP [dm6]	G	T	2.217e^-4	0.856	DOWNSTREAM trio & 1 other INTERGENIC
3L	11548600	3L_11548600_SNP [dm3] 3L_11555500_SNP [dm6]	A	C	2.218e^-4	0.856	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18410670	2R_18410670_SNP [dm3] 2R_22523165_SNP [dm6]	C	T	2.218e^-4	0.856	INTRON px
3R	9537611	3R_9537611_SNP [dm3] 3R_13711889_SNP [dm6]	T	C	2.223e^-4	0.856	UPSTREAM primo-2 & 1 other DOWNSTREAM CR34044 INTERGENIC	TF binding site mE1_TFBS_cad
3L	18389273	3L_18389273_SNP [dm3] 3L_18396173_SNP [dm6]	C	T	2.232e^-4	0.856	INTERGENIC
X	6083284	X_6083284_SNP [dm3] X_6189251_SNP [dm6]	C	A	2.238e^-4	0.856	INTRON Ca-alpha1T
X	6079568	X_6079568_SNP [dm3] X_6185535_SNP [dm6]	C	A	2.254e^-4	0.856	INTRON Ca-alpha1T
2L	14970462	2L_14970462_SNP [dm3] 2L_14970462_SNP [dm6]	G	C	2.264e^-4	0.856	INTRON CG42313
3L	9252371	3L_9252371_SNP [dm3] 3L_9259271_SNP [dm6]	T	A	2.264e^-4	0.856	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25304125	3R_25304125_SNP [dm3] 3R_29478403_SNP [dm6]	G	C	2.266e^-4	0.856	UPSTREAM Ptp99A INTRON Ptp99A
X	6084413	X_6084413_SNP [dm3] X_6190380_SNP [dm6]	T	C	2.273e^-4	0.856	INTRON Ca-alpha1T
3R	5651025	3R_5651025_SNP [dm3] 3R_9825303_SNP [dm6]	C	G	2.276e^-4	0.856	UPSTREAM CR42858 DOWNSTREAM Teh1 INTERGENIC	TF binding site mE1_TFBS_cad
2R	16211890	2R_16211890_SNP [dm3] 2R_20324385_SNP [dm6]	C	A	2.278e^-4	0.856	SYNONYMOUS_CODING CG8920
X	15068920	X_15068920_SNP [dm3] X_15174887_SNP [dm6]	C	T	2.295e^-4	0.856	UPSTREAM CG43737 INTERGENIC
2L	2430940	2L_2430940_SNP [dm3] 2L_2430940_SNP [dm6]	T	C	2.297e^-4	0.856	INTRON dpp
X	6083332	X_6083332_SNP [dm3] X_6189299_SNP [dm6]	G	C	2.301e^-4	0.856	INTRON Ca-alpha1T
3L	16515603	3L_16515603_SNP [dm3] 3L_16522503_SNP [dm6]	T	A	2.304e^-4	0.856	INTRON CG43373
3L	18076083	3L_18076083_SNP [dm3] 3L_18082983_SNP [dm6]	A	G	2.310e^-4	0.856	INTRON CR43253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9883997	3R_9883997_SNP [dm3] 3R_14058275_SNP [dm6]	C	G	2.313e^-4	0.856	INTRON foxo
X	6082589	X_6082589_SNP [dm3] X_6188556_SNP [dm6]	G	A	2.314e^-4	0.856	INTRON Ca-alpha1T
3L	3986847	3L_3986847_SNP [dm3] 3L_3986847_SNP [dm6]	T	C	2.320e^-4	0.856	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	16975820	2R_16975820_SNP [dm3] 2R_21088315_SNP [dm6]	C	G	2.325e^-4	0.856	DOWNSTREAM Rbpn-5 & 1 other INTRON Treh
2R	13598243	2R_13598243_SNP [dm3] 2R_17710738_SNP [dm6]	C	T	2.329e^-4	0.856	INTRON CG6424
3L	23043782	3L_23043782_INS [dm3] 3L_23050682_INS [dm6]	C	CCCTCCAGAC	2.335e^-4	0.856	INTERGENIC	transposable element FlyBase
X	16055500	X_16055500_SNP [dm3] X_16161467_SNP [dm6]	G	A	2.346e^-4	0.856	INTERGENIC
3L	19509177	3L_19509177_SNP [dm3] 3L_19516077_SNP [dm6]	T	C	2.347e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	771000	X_771000_SNP [dm3] X_876967_SNP [dm6]	G	A	2.358e^-4	0.856	DOWNSTREAM CG11664 INTRON CG43867
X	4795783	X_4795783_SNP [dm3] X_4901750_SNP [dm6]	C	T	2.363e^-4	0.856	INTRON CG42594
X	16354339	X_16354339_SNP [dm3] X_16460306_SNP [dm6]	A	G	2.364e^-4	0.856	UTR_3_PRIME para
2L	3406977	2L_3406977_SNP [dm3] 2L_3406977_SNP [dm6]	G	A	2.365e^-4	0.856	SYNONYMOUS_CODING pgant2
X	6062347	X_6062347_SNP [dm3] X_6168314_SNP [dm6]	A	G	2.367e^-4	0.856	INTRON Ca-alpha1T
3R	11014505	3R_11014505_SNP [dm3] 3R_15188783_SNP [dm6]	T	C	2.367e^-4	0.856	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3322271	2L_3322271_SNP [dm3] 2L_3322271_SNP [dm6]	A	T	2.367e^-4	0.856	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18075893	3L_18075893_SNP [dm3] 3L_18082793_SNP [dm6]	G	A	2.369e^-4	0.856	INTRON CR43253	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9551237	2L_9551237_SNP [dm3] 2L_9551237_SNP [dm6]	A	C	2.372e^-4	0.856	UPSTREAM jp INTRON jp
3L	14407637	3L_14407637_SNP [dm3] 3L_14414537_SNP [dm6]	T	A	2.377e^-4	0.856	INTRON bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11169062	3L_11169062_SNP [dm3] 3L_11175962_SNP [dm6]	C	T	2.379e^-4	0.856	UTR_3_PRIME CG14142 DOWNSTREAM GlcAT-P	TF binding site mE1_TFBS_cad
3R	13912352	3R_13912352_SNP [dm3] 3R_18086630_SNP [dm6]	C	T	2.384e^-4	0.856	INTERGENIC
X	22298733	X_22298733_SNP [dm3] X_22896897_SNP [dm6]	A	T	2.385e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	13397108	3L_13397108_SNP [dm3] 3L_13404008_SNP [dm6]	A	G	2.385e^-4	0.856	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21681464	3R_21681464_SNP [dm3] 3R_25855742_SNP [dm6]	T	G	2.387e^-4	0.856	UPSTREAM CG5890 INTERGENIC
3R	9883898	3R_9883898_DEL [dm3] 3R_14058176_DEL [dm6]	CTAAATTCGATTCGAATCTA...	C	2.389e^-4	0.856	INTRON foxo
X	15069165	X_15069165_SNP [dm3] X_15175132_SNP [dm6]	A	T	2.391e^-4	0.856	UPSTREAM CG43737 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23952142	3R_23952142_SNP [dm3] 3R_28126420_SNP [dm6]	T	C	2.398e^-4	0.856	INTERGENIC
2L	5940324	2L_5940324_SNP [dm3] 2L_5940324_SNP [dm6]	A	T	2.400e^-4	0.856	DOWNSTREAM CR45288 INTERGENIC
3R	3983015	3R_3983015_SNP [dm3] 3R_8157293_SNP [dm6]	G	A	2.405e^-4	0.856	INTRON grn	TF binding site mE1_TFBS_Kr
3R	14662759	3R_14662759_SNP [dm3] 3R_18837037_SNP [dm6]	G	A	2.408e^-4	0.856	INTRON CG18208
2R	12665659	2R_12665659_SNP [dm3] 2R_16778154_SNP [dm6]	T	A	2.409e^-4	0.856	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22446117	3R_22446117_SNP [dm3] 3R_26620395_SNP [dm6]	C	A	2.412e^-4	0.856	DOWNSTREAM TwdlP & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15144507	3R_15144507_SNP [dm3] 3R_19318785_SNP [dm6]	T	C	2.422e^-4	0.856	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6815436	X_6815436_SNP [dm3] X_6921403_SNP [dm6]	T	A	2.426e^-4	0.856	INTRON CG14431
3L	5147044	3L_5147044_SNP [dm3] 3L_5153944_SNP [dm6]	C	T	2.429e^-4	0.856	SYNONYMOUS_CODING Srp54k	TF binding site mE1_TFBS_sens
3R	23479106	3R_23479106_SNP [dm3] 3R_27653384_SNP [dm6]	T	A	2.431e^-4	0.856	DOWNSTREAM RpS10a INTRON tau
3L	7799451	3L_7799451_SNP [dm3] 3L_7806351_SNP [dm6]	T	G	2.432e^-4	0.856	INTRON CG32369	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12598371	3L_12598371_DEL [dm3] 3L_12605271_DEL [dm6]	TT	T	2.438e^-4	0.856	INTERGENIC
3R	19524372	3R_19524372_SNP [dm3] 3R_23698650_SNP [dm6]	C	A	2.438e^-4	0.856	DOWNSTREAM CG31468 INTRON prt	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	23513580	3R_23513580_SNP [dm3] 3R_27687858_SNP [dm6]	C	T	2.439e^-4	0.856	NON_SYNONYMOUS_CODING CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
2R	16290821	2R_16290821_SNP [dm3] 2R_20403316_SNP [dm6]	C	T	2.444e^-4	0.856	INTERGENIC
2L	8898160	2L_8898160_SNP [dm3] 2L_8898160_SNP [dm6]	T	C	2.445e^-4	0.856	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_Trl
X	13270068	X_13270068_SNP [dm3] X_13376035_SNP [dm6]	T	G	2.447e^-4	0.856	INTRON CG1640	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	9884110	3R_9884110_SNP [dm3] 3R_14058388_SNP [dm6]	A	T	2.450e^-4	0.856	INTRON foxo
X	6082587	X_6082587_SNP [dm3] X_6188554_SNP [dm6]	A	G	2.454e^-4	0.856	INTRON Ca-alpha1T
X	6082198	X_6082198_INS [dm3] X_6188165_INS [dm6]	G	GACCTG	2.461e^-4	0.856	INTRON Ca-alpha1T
2L	10963824	2L_10963824_SNP [dm3] 2L_10963824_SNP [dm6]	G	T	2.468e^-4	0.856	UTR_5_PRIME dpr2 INTRON dpr2	TF binding site mE1_TFBS_bab1
X	590706	X_590706_SNP [dm3] X_696673_SNP [dm6]	T	A	2.477e^-4	0.856	INTRON sdk
3R	10888210	3R_10888210_SNP [dm3] 3R_15062488_SNP [dm6]	A	T	2.479e^-4	0.856	INTRON dpr9
2L	4340377	2L_4340377_SNP [dm3] 2L_4340377_SNP [dm6]	G	A	2.483e^-4	0.856	INTRON Atet
3L	10480108	3L_10480108_SNP [dm3] 3L_10487008_SNP [dm6]	C	T	2.494e^-4	0.856	INTRON A2bp1
3L	8646763	3L_8646763_SNP [dm3] 3L_8653663_SNP [dm6]	C	T	2.495e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10224580	3R_10224580_SNP [dm3] 3R_14398858_SNP [dm6]	G	T	2.502e^-4	0.856	INTRON cv-c
2L	4880075	2L_4880075_SNP [dm3] 2L_4880075_SNP [dm6]	T	A	2.506e^-4	0.856	INTRON Cf2
3L	14119558	3L_14119558_SNP [dm3] 3L_14126458_SNP [dm6]	T	C	2.507e^-4	0.856	INTRON Sox21b
3R	10078309	3R_10078309_INS [dm3] 3R_14252587_INS [dm6]	T	TCCACTCCACTGCACTGTAC...	2.510e^-4	0.856	INTRON Aats-met
3L	4751647	3L_4751647_SNP [dm3] 3L_4751647_SNP [dm6]	T	C	2.512e^-4	0.856	DOWNSTREAM CG12493 INTRON RhoGEF64C
2L	16710494	2L_16710494_SNP [dm3] 2L_16710494_SNP [dm6]	C	T	2.517e^-4	0.856	INTRON CG31808
2L	12136891	2L_12136891_SNP [dm3] 2L_12136891_SNP [dm6]	G	T	2.517e^-4	0.856	INTERGENIC
2L	15617846	2L_15617846_SNP [dm3] 2L_15617846_SNP [dm6]	T	C	2.528e^-4	0.856	UTR_3_PRIME CG11865
3R	25153686	3R_25153686_SNP [dm3] 3R_29327964_SNP [dm6]	C	T	2.544e^-4	0.856	INTERGENIC
X	21847456	X_21847456_SNP [dm3] X_22445620_SNP [dm6]	C	A	2.551e^-4	0.856	INTRON CG14621
3R	19538543	3R_19538543_SNP [dm3] 3R_23712821_SNP [dm6]	T	G	2.569e^-4	0.856	UTR_3_PRIME CG10300 & 1 other
3L	14515950	3L_14515950_SNP [dm3] 3L_14522850_SNP [dm6]	C	A	2.570e^-4	0.856	INTRON bbg	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11551149	3L_11551149_INS [dm3] 3L_11558049_INS [dm6]	A	TTTTTT	2.570e^-4	0.856	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	19599214	2R_19599214_SNP [dm3] 2R_23711691_SNP [dm6]	A	G	2.576e^-4	0.856	INTERGENIC
3L	8070513	3L_8070513_SNP [dm3] 3L_8077413_SNP [dm6]	T	A	2.577e^-4	0.856	UTR_5_PRIME Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2R	19606898	2R_19606898_SNP [dm3] 2R_23719375_SNP [dm6]	G	T	2.590e^-4	0.856	SYNONYMOUS_CODING CG18128 DOWNSTREAM CR45325 INTRON Sesn	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12038586	3R_12038586_SNP [dm3] 3R_16212864_SNP [dm6]	G	A	2.592e^-4	0.856	UPSTREAM CR45642 INTERGENIC
2L	14866106	2L_14866106_SNP [dm3] 2L_14866106_SNP [dm6]	C	T	2.592e^-4	0.856	INTERGENIC
2L	6147546	2L_6147546_SNP [dm3] 2L_6147546_SNP [dm6]	C	T	2.594e^-4	0.856	INTERGENIC
3L	15922248	3L_15922248_DEL [dm3] 3L_15929148_DEL [dm6]	TT	T	2.598e^-4	0.856	INTRON Pka-C3
3L	15143625	3L_15143625_SNP [dm3] 3L_15150525_SNP [dm6]	A	G	2.603e^-4	0.856	START_GAINED FucTA UTR_5_PRIME FucTA INTRON FucTA
X	15068903	X_15068903_SNP [dm3] X_15174870_SNP [dm6]	A	T	2.603e^-4	0.856	UPSTREAM CG43737 INTERGENIC
X	12098928	X_12098928_SNP [dm3] X_12204895_SNP [dm6]	C	T	2.605e^-4	0.856	INTRON Ten-a
X	5522538	X_5522538_SNP [dm3] X_5628505_SNP [dm6]	C	T	2.607e^-4	0.856	UTR_3_PRIME CG42492
3L	7282989	3L_7282989_SNP [dm3] 3L_7289889_SNP [dm6]	A	T	2.619e^-4	0.856	INTRON unc-13-4A
2L	9765519	2L_9765519_SNP [dm3] 2L_9765519_SNP [dm6]	G	A	2.619e^-4	0.856	SYNONYMOUS_CODING ppk18 DOWNSTREAM und
3L	16720348	3L_16720348_SNP [dm3] 3L_16727248_SNP [dm6]	A	T	2.623e^-4	0.856	UTR_3_PRIME PGRP-SB2 DOWNSTREAM PGRP-SB1	TF binding site mE1_TFBS_cad
2L	9211281	2L_9211281_SNP [dm3] 2L_9211281_SNP [dm6]	G	A	2.623e^-4	0.856	INTRON tai
X	15068884	X_15068884_DEL [dm3] X_15174851_DEL [dm6]	ATTAC	CA	2.626e^-4	0.856	UPSTREAM CG43737 INTERGENIC
3R	9882385	3R_9882385_DEL [dm3] 3R_14056663_DEL [dm6]	ATAG	T	2.626e^-4	0.856	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	12383905	X_12383905_SNP [dm3] X_12489872_SNP [dm6]	G	A	2.628e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
2L	13507046	2L_13507046_INS [dm3] 2L_13507046_INS [dm6]	A	ATA	2.637e^-4	0.856	INTRON B4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15998536	2R_15998536_SNP [dm3] 2R_20111031_SNP [dm6]	C	G	2.641e^-4	0.856	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
2R	14636317	2R_14636317_SNP [dm3] 2R_18748812_SNP [dm6]	T	C	2.641e^-4	0.856	SYNONYMOUS_CODING Hs3st-A
3R	16231896	3R_16231896_SNP [dm3] 3R_20406174_SNP [dm6]	T	C	2.648e^-4	0.856	DOWNSTREAM CG4335 INTRON Gfrl
3R	16231427	3R_16231427_SNP [dm3] 3R_20405705_SNP [dm6]	G	A	2.649e^-4	0.856	DOWNSTREAM CG4335 INTRON Gfrl
3R	25360789	3R_25360789_SNP [dm3] 3R_29535067_SNP [dm6]	C	T	2.652e^-4	0.856	EXON CR43613	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4836547	X_4836547_SNP [dm3] X_4942514_SNP [dm6]	A	C	2.654e^-4	0.856	INTRON Ptp4E
2L	10973350	2L_10973350_SNP [dm3] 2L_10973350_SNP [dm6]	T	A	2.657e^-4	0.856	UTR_3_PRIME CG16743 DOWNSTREAM abo & 1 other
3L	10463187	3L_10463187_INS [dm3] 3L_10470087_INS [dm6]	T	TGTCCATCTTGCAGCT...	2.658e^-4	0.856	INTERGENIC
3R	10298011	3R_10298011_SNP [dm3] 3R_14472289_SNP [dm6]	G	A	2.667e^-4	0.856	INTRON cv-c
3L	7799050	3L_7799050_SNP [dm3] 3L_7805950_SNP [dm6]	G	C	2.669e^-4	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2L	749542	2L_749542_SNP [dm3] 2L_749542_SNP [dm6]	C	A	2.671e^-4	0.856	UPSTREAM GABA-B-R3 INTERGENIC
3L	18538851	3L_18538851_SNP [dm3] 3L_18545751_SNP [dm6]	G	A	2.674e^-4	0.856	INTERGENIC
X	4835487	X_4835487_SNP [dm3] X_4941454_SNP [dm6]	C	A	2.676e^-4	0.856	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6897802	2L_6897802_SNP [dm3] 2L_6897802_SNP [dm6]	G	A	2.682e^-4	0.856	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3R	5799837	3R_5799837_SNP [dm3] 3R_9974115_SNP [dm6]	T	G	2.685e^-4	0.856	INTRON Glut4EF
3L	13381438	3L_13381438_SNP [dm3] 3L_13388338_SNP [dm6]	T	C	2.688e^-4	0.856	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	10135758	3L_10135758_SNP [dm3] 3L_10142658_SNP [dm6]	A	T	2.691e^-4	0.856	INTERGENIC
3R	6902792	3R_6902792_SNP [dm3] 3R_11077070_SNP [dm6]	G	A	2.692e^-4	0.856	INTERGENIC
3L	8833833	3L_8833833_INS [dm3] 3L_8840733_INS [dm6]	A	AA	2.715e^-4	0.856	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23140728	3L_23140728_SNP [dm3] 3L_23147628_SNP [dm6]	A	C	2.715e^-4	0.856	DOWNSTREAM CG32350 INTERGENIC
2L	13313475	2L_13313475_SNP [dm3] 2L_13313475_SNP [dm6]	T	C	2.718e^-4	0.856	INTRON CG43778
3R	5822064	3R_5822064_SNP [dm3] 3R_9996342_SNP [dm6]	T	A	2.720e^-4	0.856	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23142670	3R_23142670_SNP [dm3] 3R_27316948_SNP [dm6]	T	C	2.721e^-4	0.856	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	6083304	X_6083304_SNP [dm3] X_6189271_SNP [dm6]	A	G	2.721e^-4	0.856	INTRON Ca-alpha1T
3R	16236103	3R_16236103_DEL [dm3] 3R_20410381_DEL [dm6]	GTT	C	2.737e^-4	0.856	INTRON Gfrl
3L	11142376	3L_11142376_SNP [dm3] 3L_11149276_SNP [dm6]	G	A	2.737e^-4	0.856	DOWNSTREAM CG6216 INTRON CG32082
3R	20976298	3R_20976298_SNP [dm3] 3R_25150576_SNP [dm6]	T	C	2.737e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15787218	2L_15787218_SNP [dm3] 2L_15787218_SNP [dm6]	T	A	2.744e^-4	0.856	SYNONYMOUS_CODING CG18109
2L	10051123	2L_10051123_SNP [dm3] 2L_10051123_SNP [dm6]	T	C	2.745e^-4	0.856	UTR_3_PRIME CG33301 UPSTREAM CR44874 DOWNSTREAM CG33301
X	15269693	X_15269693_SNP [dm3] X_15375660_SNP [dm6]	T	C	2.749e^-4	0.856	INTRON acj6
2L	10973434	2L_10973434_SNP [dm3] 2L_10973434_SNP [dm6]	A	G	2.752e^-4	0.856	DOWNSTREAM abo & 1 other INTERGENIC
3R	10428647	3R_10428647_SNP [dm3] 3R_14602925_SNP [dm6]	T	C	2.762e^-4	0.856	UPSTREAM stumps INTRON stumps
3L	9566611	3L_9566611_SNP [dm3] 3L_9573511_SNP [dm6]	A	C	2.763e^-4	0.856	INTRON CG42673
2L	6700388	2L_6700388_SNP [dm3] 2L_6700388_SNP [dm6]	C	T	2.768e^-4	0.856	SYNONYMOUS_CODING Tsp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	15943630	3L_15943630_SNP [dm3] 3L_15950530_SNP [dm6]	A	T	2.772e^-4	0.856	INTRON Pka-C3
3L	843290	3L_843290_SNP [dm3] 3L_843290_SNP [dm6]	G	A	2.775e^-4	0.856	UPSTREAM CG13889 INTRON Gr61a
2R	18560994	2R_18560994_SNP [dm3] 2R_22673489_SNP [dm6]	C	T	2.779e^-4	0.856	DOWNSTREAM RYBP EXON CR44761
3L	9247926	3L_9247926_SNP [dm3] 3L_9254826_SNP [dm6]	C	A	2.781e^-4	0.856	INTRON GluRIB
2L	19926884	2L_19926884_INS [dm3] 2L_19926884_INS [dm6]	A	AGA	2.790e^-4	0.856	INTRON sick
3R	5374385	3R_5374385_SNP [dm3] 3R_9548663_SNP [dm6]	C	A	2.790e^-4	0.856	INTRON mura EXON CR42549	TF binding site BDTNP1_TFBS_twi
3R	16915135	3R_16915135_SNP [dm3] 3R_21089413_SNP [dm6]	C	T	2.792e^-4	0.856	INTRON RhoGAP93B & 1 other
X	6082676	X_6082676_SNP [dm3] X_6188643_SNP [dm6]	C	A	2.803e^-4	0.856	INTRON Ca-alpha1T
3L	9716238	3L_9716238_SNP [dm3] 3L_9723138_SNP [dm6]	A	C	2.809e^-4	0.856	UTR_5_PRIME nbs UPSTREAM defl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	6082636	X_6082636_SNP [dm3] X_6188603_SNP [dm6]	C	T	2.816e^-4	0.856	INTRON Ca-alpha1T
3L	11393816	3L_11393816_DEL [dm3] 3L_11400716_DEL [dm6]	CCA	C	2.817e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11393821	3L_11393821_DEL [dm3] 3L_11400721_DEL [dm6]	TCAC	T	2.817e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18233212	3L_18233212_SNP [dm3] 3L_18240112_SNP [dm6]	T	G	2.819e^-4	0.856	INTERGENIC
X	6279531	X_6279531_SNP [dm3] X_6385498_SNP [dm6]	C	A	2.820e^-4	0.856	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	19601518	2R_19601518_SNP [dm3] 2R_23713995_SNP [dm6]	C	T	2.828e^-4	0.856	UTR_5_PRIME Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	3322277	2L_3322277_SNP [dm3] 2L_3322277_SNP [dm6]	G	A	2.832e^-4	0.856	INTRON CG8837	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17070879	3R_17070879_INS [dm3] 3R_21245157_INS [dm6]	T	TGCA	2.840e^-4	0.856	CODON_INSERTION CG5892
2R	3697480	2R_3697480_SNP [dm3] 2R_7809975_SNP [dm6]	T	A	2.842e^-4	0.856	UTR_3_PRIME sax DOWNSTREAM CG1550	TF binding site mE1_TFBS_cad
3L	3141280	3L_3141280_SNP [dm3] 3L_3141280_SNP [dm6]	A	G	2.845e^-4	0.856	INTRON CG11537	TF binding site mE1_TFBS_HSA
X	16579012	X_16579012_SNP [dm3] X_16684979_SNP [dm6]	A	G	2.846e^-4	0.856	UTR_3_PRIME Sep4
2L	16782293	2L_16782293_SNP [dm3] 2L_16782293_SNP [dm6]	G	A	2.848e^-4	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	18304678	3L_18304678_SNP [dm3] 3L_18311578_SNP [dm6]	A	G	2.858e^-4	0.856	INTERGENIC
X	4207971	X_4207971_SNP [dm3] X_4313938_SNP [dm6]	G	A	2.861e^-4	0.856	DOWNSTREAM mei-9 EXON CR44957
2L	17200898	2L_17200898_SNP [dm3] 2L_17200898_SNP [dm6]	A	T	2.862e^-4	0.856	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3L	994266	3L_994266_SNP [dm3] 3L_994266_SNP [dm6]	G	C	2.863e^-4	0.856	DOWNSTREAM Glut1 INTRON CG12038	TF binding site mE1_TFBS_cad
3R	17801012	3R_17801012_SNP [dm3] 3R_21975290_SNP [dm6]	T	A	2.869e^-4	0.856	INTRON Eip93F
3R	25129572	3R_25129572_SNP [dm3] 3R_29303850_SNP [dm6]	C	T	2.872e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19979829	2L_19979829_SNP [dm3] 2L_19979829_SNP [dm6]	C	T	2.876e^-4	0.856	DOWNSTREAM CR43620 INTRON CG43861
3L	5098943	3L_5098943_SNP [dm3] 3L_5098943_SNP [dm6]	A	G	2.881e^-4	0.856	EXON CR34047
2L	11395123	2L_11395123_SNP [dm3] 2L_11395123_SNP [dm6]	G	C	2.890e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3R	7520788	3R_7520788_SNP [dm3] 3R_11695066_SNP [dm6]	G	A	2.913e^-4	0.856	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5822034	3R_5822034_SNP [dm3] 3R_9996312_SNP [dm6]	G	A	2.914e^-4	0.856	NON_SYNONYMOUS_CODING Gr85a UPSTREAM Spn85F DOWNSTREAM Glut4EF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18304679	3L_18304679_SNP [dm3] 3L_18311579_SNP [dm6]	T	A	2.918e^-4	0.856	INTERGENIC
X	22298807	X_22298807_SNP [dm3] X_22896971_SNP [dm6]	C	T	2.921e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	10373078	3R_10373078_SNP [dm3] 3R_14547356_SNP [dm6]	G	T	2.928e^-4	0.856	INTRON Pde6
3L	8667656	3L_8667656_SNP [dm3] 3L_8674556_SNP [dm6]	A	T	2.935e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	5727478	3R_5727478_SNP [dm3] 3R_9901756_SNP [dm6]	G	C	2.938e^-4	0.856	INTRON Glut4EF
X	4263020	X_4263020_SNP [dm3] X_4368987_SNP [dm6]	C	T	2.938e^-4	0.856	SYNONYMOUS_CODING CG3626 UPSTREAM mir-983-1 & 2 others EXON CR43614	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4271164	X_4271164_SNP [dm3] X_4377131_SNP [dm6]	A	G	2.939e^-4	0.856	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10521817	2L_10521817_SNP [dm3] 2L_10521817_SNP [dm6]	A	T	2.941e^-4	0.856	INTERGENIC
2L	20125093	2L_20125093_SNP [dm3] 2L_20125093_SNP [dm6]	G	A	2.951e^-4	0.856	INTERGENIC
3L	11924175	3L_11924175_DEL [dm3] 3L_11931075_DEL [dm6]	TT	T	2.954e^-4	0.856	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18746416	3R_18746416_SNP [dm3] 3R_22920694_SNP [dm6]	G	A	2.956e^-4	0.856	INTRON klg
3L	3136956	3L_3136956_SNP [dm3] 3L_3136956_SNP [dm6]	C	A	2.959e^-4	0.856	INTRON CG11537
2R	16693003	2R_16693003_SNP [dm3] 2R_20805498_SNP [dm6]	C	T	2.961e^-4	0.856	INTERGENIC
X	4271163	X_4271163_SNP [dm3] X_4377130_SNP [dm6]	C	T	2.964e^-4	0.856	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3528577	2L_3528577_SNP [dm3] 2L_3528577_SNP [dm6]	G	T	2.965e^-4	0.856	NON_SYNONYMOUS_CODING Spindly DOWNSTREAM CG8852
3L	11168943	3L_11168943_SNP [dm3] 3L_11175843_SNP [dm6]	A	G	2.969e^-4	0.856	UTR_3_PRIME CG14142	TF binding site mE1_TFBS_cad
3L	12999796	3L_12999796_DEL [dm3] 3L_13006696_DEL [dm6]	GTGTGTAA	G	2.970e^-4	0.856	UPSTREAM CG11263 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2L	4345933	2L_4345933_SNP [dm3] 2L_4345933_SNP [dm6]	A	G	2.971e^-4	0.856	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	992138	3L_992138_INS [dm3] 3L_992138_INS [dm6]	T	TGAT	2.978e^-4	0.856	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
3L	12853414	3L_12853414_SNP [dm3] 3L_12860314_SNP [dm6]	A	G	2.980e^-4	0.856	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3R	7264890	3R_7264890_SNP [dm3] 3R_11439168_SNP [dm6]	C	G	2.981e^-4	0.856	INTRON CG17230 & 1 other
3R	17070868	3R_17070868_SNP [dm3] 3R_21245146_SNP [dm6]	C	T	2.989e^-4	0.856	SYNONYMOUS_CODING CG5892
3R	23297480	3R_23297480_SNP [dm3] 3R_27471758_SNP [dm6]	C	G	2.996e^-4	0.856	INTERGENIC
2R	14303689	2R_14303689_SNP [dm3] 2R_18416184_SNP [dm6]	C	T	3.003e^-4	0.856	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	7905787	X_7905787_SNP [dm3] X_8011754_SNP [dm6]	A	C	3.012e^-4	0.856	INTRON Tbh
3R	9882250	3R_9882250_SNP [dm3] 3R_14056528_SNP [dm6]	A	G	3.017e^-4	0.856	UPSTREAM foxo INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	13120802	3L_13120802_SNP [dm3] 3L_13127702_SNP [dm6]	G	A	3.022e^-4	0.856	INTERGENIC
X	3899151	X_3899151_SNP [dm3] X_4005118_SNP [dm6]	A	G	3.024e^-4	0.856	INTERGENIC
2R	3700336	2R_3700336_SNP [dm3] 2R_7812831_SNP [dm6]	G	T	3.025e^-4	0.856	UTR_5_PRIME CG1882 UPSTREAM CG1550 & 1 other INTRON CG1882	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3700977	2R_3700977_SNP [dm3] 2R_7813472_SNP [dm6]	G	A	3.025e^-4	0.856	SYNONYMOUS_CODING CG1882	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13506731	2L_13506731_SNP [dm3] 2L_13506731_SNP [dm6]	T	C	3.027e^-4	0.856	INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13044291	3L_13044291_SNP [dm3] 3L_13051191_SNP [dm6]	C	T	3.028e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6082210	X_6082210_SNP [dm3] X_6188177_SNP [dm6]	A	C	3.030e^-4	0.856	INTRON Ca-alpha1T
3L	909465	3L_909465_SNP [dm3] 3L_909465_SNP [dm6]	T	C	3.038e^-4	0.856	SYNONYMOUS_CODING nerfin-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11083889	2R_11083889_SNP [dm3] 2R_15196384_SNP [dm6]	G	C	3.042e^-4	0.856	INTERGENIC
X	5290044	X_5290044_SNP [dm3] X_5396011_SNP [dm6]	G	A	3.047e^-4	0.856	INTRON SK
X	5290049	X_5290049_SNP [dm3] X_5396016_SNP [dm6]	A	G	3.047e^-4	0.856	INTRON SK
X	6323133	X_6323133_SNP [dm3] X_6429100_SNP [dm6]	A	C	3.054e^-4	0.856	INTRON CG42340
3L	17909708	3L_17909708_SNP [dm3] 3L_17916608_SNP [dm6]	A	G	3.059e^-4	0.856	INTERGENIC
3L	15922245	3L_15922245_SNP [dm3] 3L_15929145_SNP [dm6]	T	C	3.059e^-4	0.856	INTRON Pka-C3
3R	13906764	3R_13906764_SNP [dm3] 3R_18081042_SNP [dm6]	A	C	3.060e^-4	0.856	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11051435	X_11051435_SNP [dm3] X_11157402_SNP [dm6]	C	T	3.063e^-4	0.856	SYNONYMOUS_CODING CG32668 INTRON Dlic	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11051447	X_11051447_SNP [dm3] X_11157414_SNP [dm6]	G	A	3.063e^-4	0.856	SYNONYMOUS_CODING CG32668 INTRON Dlic	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11051474	X_11051474_SNP [dm3] X_11157441_SNP [dm6]	G	A	3.063e^-4	0.856	SYNONYMOUS_CODING CG32668 INTRON Dlic	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10880752	3R_10880752_INS [dm3] 3R_15055030_INS [dm6]	T	TT	3.070e^-4	0.856	UTR_3_PRIME dpr9
3L	13559486	3L_13559486_SNP [dm3] 3L_13566386_SNP [dm6]	C	T	3.072e^-4	0.856	INTRON bru-3
X	12098932	X_12098932_SNP [dm3] X_12204899_SNP [dm6]	T	A	3.084e^-4	0.856	INTRON Ten-a
3L	10244311	3L_10244311_SNP [dm3] 3L_10251211_SNP [dm6]	A	G	3.091e^-4	0.856	INTERGENIC
3L	11548603	3L_11548603_SNP [dm3] 3L_11555503_SNP [dm6]	G	T	3.098e^-4	0.856	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20225058	2R_20225058_SNP [dm3] 2R_24337535_SNP [dm6]	A	C	3.098e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18101884	3R_18101884_SNP [dm3] 3R_22276162_SNP [dm6]	G	C	3.098e^-4	0.856	INTRON SKIP
3R	7020793	3R_7020793_SNP [dm3] 3R_11195071_SNP [dm6]	T	C	3.099e^-4	0.856	INTERGENIC
2R	9072796	2R_9072796_SNP [dm3] 2R_13185291_SNP [dm6]	T	C	3.099e^-4	0.856	UPSTREAM CG17724 DOWNSTREAM Kdm4B INTRON CG17724 & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	23081885	3L_23081885_SNP [dm3] 3L_23088785_SNP [dm6]	C	A	3.112e^-4	0.856	INTERGENIC	transposable element FlyBase
X	6082561	X_6082561_SNP [dm3] X_6188528_SNP [dm6]	G	C	3.115e^-4	0.856	INTRON Ca-alpha1T
2R	17662332	2R_17662332_SNP [dm3] 2R_21774827_SNP [dm6]	G	A	3.116e^-4	0.856	UTR_3_PRIME CG4021
2L	5941683	2L_5941683_SNP [dm3] 2L_5941683_SNP [dm6]	G	T	3.118e^-4	0.856	UPSTREAM CR45289 DOWNSTREAM Sfp26Ad INTERGENIC
3L	17701434	3L_17701434_SNP [dm3] 3L_17708334_SNP [dm6]	C	T	3.119e^-4	0.856	INTRON Ccn
3L	2148204	3L_2148204_SNP [dm3] 3L_2148204_SNP [dm6]	A	G	3.121e^-4	0.856	INTRON zormin
3L	12663205	3L_12663205_SNP [dm3] 3L_12670105_SNP [dm6]	G	C	3.123e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5949837	2L_5949837_SNP [dm3] 2L_5949837_SNP [dm6]	G	A	3.133e^-4	0.856	UTR_5_PRIME CG9044 DOWNSTREAM Gpdh	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	12592528	2L_12592528_SNP [dm3] 2L_12592528_SNP [dm6]	T	G	3.148e^-4	0.856	INTRON nub
3R	10688960	3R_10688960_SNP [dm3] 3R_14863238_SNP [dm6]	G	A	3.149e^-4	0.856	INTRON btsz
2L	12244994	2L_12244994_SNP [dm3] 2L_12244994_SNP [dm6]	T	G	3.154e^-4	0.856	INTRON aret
3R	5389990	3R_5389990_SNP [dm3] 3R_9564268_SNP [dm6]	C	T	3.158e^-4	0.856	SYNONYMOUS_CODING Vps45 UPSTREAM CG9393	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
2R	12819689	2R_12819689_SNP [dm3] 2R_16932184_SNP [dm6]	C	G	3.160e^-4	0.856	INTRON Pkc53E
2R	9144355	2R_9144355_SNP [dm3] 2R_13256850_SNP [dm6]	T	C	3.166e^-4	0.856	SYNONYMOUS_CODING CG4716
3L	7799054	3L_7799054_SNP [dm3] 3L_7805954_SNP [dm6]	A	G	3.170e^-4	0.856	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	9193712	3L_9193712_SNP [dm3] 3L_9200612_SNP [dm6]	C	A	3.181e^-4	0.856	INTERGENIC
3R	18062401	3R_18062401_SNP [dm3] 3R_22236679_SNP [dm6]	A	T	3.188e^-4	0.856	INTRON SKIP
2R	19602537	2R_19602537_INS [dm3] 2R_23715014_INS [dm6]	C	CA	3.199e^-4	0.856	INTRON Sesn
3R	2591251	3R_2591251_SNP [dm3] 3R_6765529_SNP [dm6]	T	G	3.200e^-4	0.856	DOWNSTREAM Ama EXON CR44930	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11395112	2L_11395112_DEL [dm3] 2L_11395112_DEL [dm6]	AT	A	3.207e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3R	5798902	3R_5798902_SNP [dm3] 3R_9973180_SNP [dm6]	A	T	3.209e^-4	0.856	INTRON Glut4EF
3L	10491723	3L_10491723_SNP [dm3] 3L_10498623_SNP [dm6]	G	A	3.218e^-4	0.856	INTRON A2bp1
3R	13396662	3R_13396662_SNP [dm3] 3R_17570940_SNP [dm6]	G	A	3.227e^-4	0.856	INTERGENIC
3R	12208748	3R_12208748_SNP [dm3] 3R_16383026_SNP [dm6]	G	C	3.245e^-4	0.856	INTRON ss	regulatory region REDfly_CRMs
3R	25878882	3R_25878882_INS [dm3] 3R_30053160_INS [dm6]	A	AACA	3.251e^-4	0.856	DOWNSTREAM CR44046	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8386486	3L_8386486_SNP [dm3] 3L_8393386_SNP [dm6]	G	C	3.253e^-4	0.856	SYNONYMOUS_CODING Jon66Cii	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5959014	3R_5959014_SNP [dm3] 3R_10133292_SNP [dm6]	C	A	3.260e^-4	0.856	UTR_5_PRIME tws INTRON tws	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	8150892	2L_8150892_SNP [dm3] 2L_8150892_SNP [dm6]	C	A	3.278e^-4	0.856	INTRON CG8552 & 1 other
3R	3139044	3R_3139044_SNP [dm3] 3R_7313322_SNP [dm6]	G	T	3.279e^-4	0.856	UPSTREAM CR44334 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3045739	X_3045739_DEL [dm3] X_3151706_DEL [dm6]	CTCAAAT	A	3.281e^-4	0.856	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6793106	2R_6793106_SNP [dm3] 2R_10905601_SNP [dm6]	G	A	3.284e^-4	0.856	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16175402	2R_16175402_SNP [dm3] 2R_20287897_SNP [dm6]	C	T	3.291e^-4	0.856	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
2L	8798983	2L_8798983_SNP [dm3] 2L_8798983_SNP [dm6]	C	T	3.296e^-4	0.856	INTERGENIC
2L	8898277	2L_8898277_SNP [dm3] 2L_8898277_SNP [dm6]	C	T	3.302e^-4	0.856	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	17461837	2R_17461837_SNP [dm3] 2R_21574332_SNP [dm6]	G	T	3.305e^-4	0.856	INTRON CG10440
2L	10431979	2L_10431979_SNP [dm3] 2L_10431979_SNP [dm6]	C	T	3.309e^-4	0.856	SYNONYMOUS_CODING TfIIB DOWNSTREAM CG5337	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16767291	2R_16767291_DEL [dm3] 2R_20879786_DEL [dm6]	AA	A	3.318e^-4	0.856	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2L	16702168	2L_16702168_DEL [dm3] 2L_16702168_DEL [dm6]	TACA	T	3.321e^-4	0.856	EXON CR43670	TF binding site mE1_TFBS_sens
2L	3530559	2L_3530559_SNP [dm3] 2L_3530559_SNP [dm6]	T	A	3.326e^-4	0.856	UPSTREAM Che-13 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_zfh1
2L	2084489	2L_2084489_SNP [dm3] 2L_2084489_SNP [dm6]	C	G	3.329e^-4	0.856	DOWNSTREAM CR44055 INTRON dpr3
2L	2084510	2L_2084510_SNP [dm3] 2L_2084510_SNP [dm6]	A	T	3.329e^-4	0.856	DOWNSTREAM CR44055 INTRON dpr3
3L	9425671	3L_9425671_SNP [dm3] 3L_9432571_SNP [dm6]	G	A	3.349e^-4	0.856	INTRON MTF-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14094271	3R_14094271_SNP [dm3] 3R_18268549_SNP [dm6]	A	G	3.351e^-4	0.856	INTRON CG18599
3R	4320818	3R_4320818_SNP [dm3] 3R_8495096_SNP [dm6]	C	T	3.354e^-4	0.856	INTERGENIC
3R	5444931	3R_5444931_SNP [dm3] 3R_9619209_SNP [dm6]	C	A	3.354e^-4	0.856	INTRON CG8312
3L	2393411	3L_2393411_SNP [dm3] 3L_2393411_SNP [dm6]	G	A	3.361e^-4	0.856	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7698023	2R_7698023_DEL [dm3] 2R_11810518_DEL [dm6]	AGCGCCAGCAGCAACA...	A	3.364e^-4	0.856	CODON_DELETION ths
3R	13570378	3R_13570378_SNP [dm3] 3R_17744656_SNP [dm6]	G	C	3.375e^-4	0.856	INTRON TyrRII	TF binding site mE1_TFBS_cad
2R	14972746	2R_14972746_INS [dm3] 2R_19085241_INS [dm6]	T	TT	3.375e^-4	0.856	INTRON 5-HT1A
3L	992140	3L_992140_SNP [dm3] 3L_992140_SNP [dm6]	C	T	3.383e^-4	0.856	UTR_3_PRIME Glut1 DOWNSTREAM Glut1
2R	20217580	2R_20217580_SNP [dm3] 2R_24330057_SNP [dm6]	T	A	3.415e^-4	0.856	EXON CR44810	TF binding site mE1_TFBS_Trl
3R	11015110	3R_11015110_SNP [dm3] 3R_15189388_SNP [dm6]	C	A	3.417e^-4	0.856	NON_SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12563469	2R_12563469_SNP [dm3] 2R_16675964_SNP [dm6]	T	C	3.418e^-4	0.856	INTRON CG30463
3L	13689804	3L_13689804_SNP [dm3] 3L_13696704_SNP [dm6]	T	A	3.418e^-4	0.856	INTRON bru-3
3R	16236058	3R_16236058_INS [dm3] 3R_20410336_INS [dm6]	T	TATTCATACAAAAATATGTG...	3.418e^-4	0.856	INTRON Gfrl
3R	16236062	3R_16236062_SNP [dm3] 3R_20410340_SNP [dm6]	T	C	3.418e^-4	0.856	INTRON Gfrl
3L	18538852	3L_18538852_SNP [dm3] 3L_18545752_SNP [dm6]	C	T	3.448e^-4	0.856	INTERGENIC
2R	15687083	2R_15687083_SNP [dm3] 2R_19799578_SNP [dm6]	T	C	3.448e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	990355	3L_990355_SNP [dm3] 3L_990355_SNP [dm6]	A	C	3.453e^-4	0.856	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	11649876	3R_11649876_DEL [dm3] 3R_15824154_DEL [dm6]	GCAAG	G	3.471e^-4	0.856	UTR_3_PRIME rec DOWNSTREAM rec & 1 other
2R	18500303	2R_18500303_SNP [dm3] 2R_22612798_SNP [dm6]	A	G	3.475e^-4	0.856	SPLICE_SITE_REGION CG4329 INTRON CG4329
2R	11083839	2R_11083839_SNP [dm3] 2R_15196334_SNP [dm6]	T	G	3.478e^-4	0.856	INTERGENIC
3R	21750735	3R_21750735_SNP [dm3] 3R_25925013_SNP [dm6]	G	A	3.479e^-4	0.856	INTRON CCAP-R
3R	20840357	3R_20840357_SNP [dm3] 3R_25014635_SNP [dm6]	G	C	3.483e^-4	0.856	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9502181	3L_9502181_INS [dm3] 3L_9509081_INS [dm6]	C	CC	3.499e^-4	0.856	DOWNSTREAM RpS9 INTRON CG3408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23952118	3R_23952118_SNP [dm3] 3R_28126396_SNP [dm6]	G	C	3.505e^-4	0.856	INTERGENIC
X	12383913	X_12383913_SNP [dm3] X_12489880_SNP [dm6]	G	T	3.505e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
3L	12135158	3L_12135158_SNP [dm3] 3L_12142058_SNP [dm6]	T	C	3.511e^-4	0.856	SYNONYMOUS_CODING RhoGAP68F
3L	9197547	3L_9197547_SNP [dm3] 3L_9204447_SNP [dm6]	G	C	3.513e^-4	0.856	NON_SYNONYMOUS_CODING Slc45-1	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	15889722	3L_15889722_SNP [dm3] 3L_15896622_SNP [dm6]	A	G	3.513e^-4	0.856	INTRON pHCl
2R	12563467	2R_12563467_SNP [dm3] 2R_16675962_SNP [dm6]	T	G	3.514e^-4	0.856	INTRON CG30463
3L	996409	3L_996409_SNP [dm3] 3L_996409_SNP [dm6]	T	C	3.514e^-4	0.856	UTR_3_PRIME trio DOWNSTREAM CG12038 & 1 other
2R	4469539	2R_4469539_SNP [dm3] 2R_8582034_SNP [dm6]	A	C	3.515e^-4	0.856	NON_SYNONYMOUS_CODING CG42326	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9519746	2R_9519746_SNP [dm3] 2R_13632241_SNP [dm6]	G	T	3.520e^-4	0.856	INTRON fas
2L	4880052	2L_4880052_DEL [dm3] 2L_4880052_DEL [dm6]	GGTACTGATTGATCG...	G	3.526e^-4	0.856	INTRON Cf2
3R	10039195	3R_10039195_SNP [dm3] 3R_14213473_SNP [dm6]	G	C	3.529e^-4	0.856	INTRON Dop1R1
3R	5881791	3R_5881791_SNP [dm3] 3R_10056069_SNP [dm6]	T	C	3.532e^-4	0.856	NON_SYNONYMOUS_CODING Npc2d
3R	7520807	3R_7520807_SNP [dm3] 3R_11695085_SNP [dm6]	C	T	3.533e^-4	0.856	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520825	3R_7520825_SNP [dm3] 3R_11695103_SNP [dm6]	T	A	3.533e^-4	0.856	UPSTREAM Fer3 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16559053	2R_16559053_SNP [dm3] 2R_20671548_SNP [dm6]	G	A	3.535e^-4	0.856	SYNONYMOUS_CODING CG30152 UPSTREAM CG30152 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18468759	X_18468759_DEL [dm3] X_18574726_DEL [dm6]	AAATAATAGAATAGAATAAA...	A	3.537e^-4	0.856	INTERGENIC
3L	13381418	3L_13381418_SNP [dm3] 3L_13388318_SNP [dm6]	T	C	3.539e^-4	0.856	UTR_3_PRIME Poc1 UPSTREAM CG10171
2L	7168480	2L_7168480_SNP [dm3] 2L_7168480_SNP [dm6]	A	T	3.556e^-4	0.856	INTERGENIC
2L	5510419	2L_5510419_SNP [dm3] 2L_5510419_SNP [dm6]	G	A	3.564e^-4	0.856	INTERGENIC
3R	5449864	3R_5449864_SNP [dm3] 3R_9624142_SNP [dm6]	T	A	3.571e^-4	0.856	NON_SYNONYMOUS_CODING CG8312	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11047670	2L_11047670_SNP [dm3] 2L_11047670_SNP [dm6]	G	A	3.571e^-4	0.856	INTRON Samuel
X	19058352	X_19058352_SNP [dm3] X_19164319_SNP [dm6]	G	A	3.582e^-4	0.856	SYNONYMOUS_CODING RhoGAP18B
2L	7510067	2L_7510067_SNP [dm3] 2L_7510067_SNP [dm6]	A	T	3.583e^-4	0.856	INTRON RapGAP1
3L	15320777	3L_15320777_SNP [dm3] 3L_15327677_SNP [dm6]	A	C	3.587e^-4	0.856	INTERGENIC
3L	9627046	3L_9627046_SNP [dm3] 3L_9633946_SNP [dm6]	G	A	3.592e^-4	0.856	INTRON fry	TF binding site mE1_TFBS_cad
3L	8401047	3L_8401047_SNP [dm3] 3L_8407947_SNP [dm6]	T	A	3.597e^-4	0.856	SYNONYMOUS_CODING Oseg1 DOWNSTREAM CG13667
3R	16821526	3R_16821526_SNP [dm3] 3R_20995804_SNP [dm6]	A	T	3.601e^-4	0.856	INTRON Calx
3R	16822628	3R_16822628_SNP [dm3] 3R_20996906_SNP [dm6]	G	A	3.604e^-4	0.856	INTRON Calx
3L	14210805	3L_14210805_SNP [dm3] 3L_14217705_SNP [dm6]	G	C	3.609e^-4	0.856	UPSTREAM CG7768 INTRON nuf
3R	3981111	3R_3981111_SNP [dm3] 3R_8155389_SNP [dm6]	T	A	3.609e^-4	0.856	INTRON grn
3R	16915137	3R_16915137_SNP [dm3] 3R_21089415_SNP [dm6]	T	A	3.609e^-4	0.856	INTRON RhoGAP93B & 1 other
2R	9143690	2R_9143690_SNP [dm3] 2R_13256185_SNP [dm6]	C	A	3.623e^-4	0.856	UPSTREAM CR44343 & 1 other INTERGENIC
X	20850296	X_20850296_SNP [dm3] X_20979269_SNP [dm6]	G	A	3.624e^-4	0.856	DOWNSTREAM CG44426 INTERGENIC
3L	13131722	3L_13131722_SNP [dm3] 3L_13138622_SNP [dm6]	T	C	3.630e^-4	0.856	INTERGENIC
3R	24204534	3R_24204534_SNP [dm3] 3R_28378812_SNP [dm6]	C	T	3.630e^-4	0.856	INTERGENIC
2R	6793103	2R_6793103_SNP [dm3] 2R_10905598_SNP [dm6]	A	T	3.631e^-4	0.856	DOWNSTREAM CG12943 INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9269114	2R_9269114_SNP [dm3] 2R_13381609_SNP [dm6]	T	G	3.634e^-4	0.856	INTERGENIC
2L	8795437	2L_8795437_SNP [dm3] 2L_8795437_SNP [dm6]	G	A	3.640e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	15253011	3R_15253011_SNP [dm3] 3R_19427289_SNP [dm6]	G	T	3.642e^-4	0.856	INTRON CG31221
3L	13002363	3L_13002363_SNP [dm3] 3L_13009263_SNP [dm6]	C	A	3.645e^-4	0.856	UTR_3_PRIME CG14117 DOWNSTREAM CG11261
3R	5123499	3R_5123499_SNP [dm3] 3R_9297777_SNP [dm6]	C	T	3.646e^-4	0.856	INTRON CG8861
2L	10845051	2L_10845051_SNP [dm3] 2L_10845051_SNP [dm6]	A	G	3.652e^-4	0.856	UPSTREAM CG17140 DOWNSTREAM Porin2 INTRON CG17139 & 1 other
2R	14769838	2R_14769838_SNP [dm3] 2R_18882333_SNP [dm6]	T	C	3.661e^-4	0.856	INTRON sano
2L	16177192	2L_16177192_SNP [dm3] 2L_16177192_SNP [dm6]	T	C	3.662e^-4	0.856	SYNONYMOUS_CODING Ca-alpha1D
3L	9398764	3L_9398764_SNP [dm3] 3L_9405664_SNP [dm6]	C	T	3.672e^-4	0.856	SYNONYMOUS_CODING Cpr67B DOWNSTREAM CG4022	TF binding site mE1_TFBS_sens
3R	19365790	3R_19365790_SNP [dm3] 3R_23540068_SNP [dm6]	T	A	3.676e^-4	0.856	INTERGENIC
2R	12666752	2R_12666752_SNP [dm3] 2R_16779247_SNP [dm6]	G	T	3.689e^-4	0.856	UPSTREAM resilin DOWNSTREAM Vkor INTERGENIC
X	18734745	X_18734745_SNP [dm3] X_18840712_SNP [dm6]	G	C	3.694e^-4	0.856	SYNONYMOUS_CODING Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18019897	3R_18019897_SNP [dm3] 3R_22194175_SNP [dm6]	G	C	3.696e^-4	0.856	DOWNSTREAM CR45224 INTRON SKIP	TF binding site mE1_TFBS_cad
3L	15884213	3L_15884213_SNP [dm3] 3L_15891113_SNP [dm6]	C	A	3.699e^-4	0.856	INTRON pHCl
3R	5942220	3R_5942220_SNP [dm3] 3R_10116498_SNP [dm6]	C	T	3.713e^-4	0.856	INTRON CG3940
3L	591741	3L_591741_SNP [dm3] 3L_591741_SNP [dm6]	T	C	3.722e^-4	0.856	INTERGENIC
2R	18372002	2R_18372002_SNP [dm3] 2R_22484497_SNP [dm6]	A	T	3.723e^-4	0.856	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15696990	3R_15696990_SNP [dm3] 3R_19871268_SNP [dm6]	A	G	3.731e^-4	0.856	INTRON CG4562	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11395116	2L_11395116_SNP [dm3] 2L_11395116_SNP [dm6]	T	G	3.731e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
2L	3388542	2L_3388542_SNP [dm3] 2L_3388542_SNP [dm6]	C	A	3.744e^-4	0.856	UPSTREAM Sfp23F & 2 others INTERGENIC
X	8069329	X_8069329_SNP [dm3] X_8175296_SNP [dm6]	G	A	3.753e^-4	0.856	SPLICE_SITE_REGION slpr INTRON slpr
3R	2637304	3R_2637304_DEL [dm3] 3R_6811582_DEL [dm6]	TTAGAA	T	3.754e^-4	0.856	INTRON CR42651	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
3L	9627055	3L_9627055_SNP [dm3] 3L_9633955_SNP [dm6]	G	A	3.758e^-4	0.856	INTRON fry	TF binding site mE1_TFBS_cad
2L	16781440	2L_16781440_SNP [dm3] 2L_16781440_SNP [dm6]	A	C	3.758e^-4	0.856	INTRON Mhc
2L	16782575	2L_16782575_SNP [dm3] 2L_16782575_SNP [dm6]	T	A	3.765e^-4	0.856	INTRON Mhc	TF binding site mE1_TFBS_chinmo
3L	4710296	3L_4710296_SNP [dm3] 3L_4710296_SNP [dm6]	A	C	3.766e^-4	0.856	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4751652	3L_4751652_SNP [dm3] 3L_4751652_SNP [dm6]	G	A	3.772e^-4	0.856	DOWNSTREAM CG12493 INTRON RhoGEF64C
3R	17619164	3R_17619164_SNP [dm3] 3R_21793442_SNP [dm6]	T	A	3.778e^-4	0.856	INTRON CASK	TF binding site mE1_TFBS_cad
3R	16236235	3R_16236235_INS [dm3] 3R_20410513_INS [dm6]	A	AGTATA	3.782e^-4	0.856	INTRON Gfrl
3L	4694242	3L_4694242_SNP [dm3] 3L_4694242_SNP [dm6]	A	T	3.789e^-4	0.856	UTR_3_PRIME CG15876 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14168901	3R_14168901_SNP [dm3] 3R_18343179_SNP [dm6]	A	C	3.797e^-4	0.856	INTRON CG15803
3R	13924914	3R_13924914_SNP [dm3] 3R_18099192_SNP [dm6]	T	C	3.804e^-4	0.856	INTRON sr
2R	12563474	2R_12563474_SNP [dm3] 2R_16675969_SNP [dm6]	T	A	3.807e^-4	0.856	INTRON CG30463
2L	10962098	2L_10962098_SNP [dm3] 2L_10962098_SNP [dm6]	C	A	3.809e^-4	0.856	INTRON dpr2
3R	10253269	3R_10253269_SNP [dm3] 3R_14427547_SNP [dm6]	T	A	3.813e^-4	0.856	SYNONYMOUS_CODING cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9362077	2L_9362077_SNP [dm3] 2L_9362077_SNP [dm6]	T	A	3.816e^-4	0.856	INTERGENIC
2R	14166263	2R_14166263_SNP [dm3] 2R_18278758_SNP [dm6]	T	C	3.818e^-4	0.856	UTR_3_PRIME pen-2 & 1 other DOWNSTREAM sbb & 1 other
3R	23952125	3R_23952125_SNP [dm3] 3R_28126403_SNP [dm6]	G	T	3.820e^-4	0.856	INTERGENIC
3R	23952128	3R_23952128_DEL [dm3] 3R_28126406_DEL [dm6]	TT	T	3.820e^-4	0.856	INTERGENIC
3R	23952136	3R_23952136_SNP [dm3] 3R_28126414_SNP [dm6]	A	G	3.820e^-4	0.856	INTERGENIC
3R	23952137	3R_23952137_INS [dm3] 3R_28126415_INS [dm6]	T	TA	3.820e^-4	0.856	INTERGENIC
3R	23952153	3R_23952153_SNP [dm3] 3R_28126431_SNP [dm6]	A	T	3.820e^-4	0.856	INTERGENIC
3L	6671352	3L_6671352_SNP [dm3] 3L_6678252_SNP [dm6]	G	T	3.828e^-4	0.856	INTERGENIC
2L	11047668	2L_11047668_SNP [dm3] 2L_11047668_SNP [dm6]	T	A	3.830e^-4	0.856	INTRON Samuel
2R	11587511	2R_11587511_SNP [dm3] 2R_15700006_SNP [dm6]	T	C	3.831e^-4	0.856	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3887588	2L_3887588_SNP [dm3] 2L_3887588_SNP [dm6]	C	T	3.834e^-4	0.856	SYNONYMOUS_CODING capu INTRON capu
X	22298977	X_22298977_SNP [dm3] X_22897141_SNP [dm6]	G	A	3.835e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	14920898	2R_14920898_SNP [dm3] 2R_19033393_SNP [dm6]	C	T	3.837e^-4	0.856	UPSTREAM 5-HT1B INTERGENIC
3R	12992004	3R_12992004_SNP [dm3] 3R_17166282_SNP [dm6]	G	C	3.844e^-4	0.856	INTRON Mur89F
X	22298666	X_22298666_SNP [dm3] X_22896830_SNP [dm6]	G	T	3.846e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	14093822	3R_14093822_SNP [dm3] 3R_18268100_SNP [dm6]	C	A	3.852e^-4	0.856	INTRON CG18599	TF binding site mE1_TFBS_HSA mE1_TFBS_run
3R	21683915	3R_21683915_SNP [dm3] 3R_25858193_SNP [dm6]	C	T	3.867e^-4	0.856	INTRON CG5890
3L	12235524	3L_12235524_SNP [dm3] 3L_12242424_SNP [dm6]	G	A	3.868e^-4	0.856	INTRON app
2L	18811826	2L_18811826_SNP [dm3] 2L_18811826_SNP [dm6]	C	T	3.878e^-4	0.856	UPSTREAM CG10570 & 3 others INTERGENIC
3L	11047405	3L_11047405_SNP [dm3] 3L_11054305_SNP [dm6]	C	A	3.880e^-4	0.856	UTR_5_PRIME CG7888
2R	12876091	2R_12876091_SNP [dm3] 2R_16988586_SNP [dm6]	C	T	3.883e^-4	0.856	INTRON Cbp53E
3L	8699375	3L_8699375_SNP [dm3] 3L_8706275_SNP [dm6]	C	T	3.891e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
X	6062180	X_6062180_SNP [dm3] X_6168147_SNP [dm6]	G	C	3.909e^-4	0.856	INTRON Ca-alpha1T
X	6062182	X_6062182_SNP [dm3] X_6168149_SNP [dm6]	G	T	3.909e^-4	0.856	INTRON Ca-alpha1T
2L	5949821	2L_5949821_SNP [dm3] 2L_5949821_SNP [dm6]	C	G	3.911e^-4	0.856	SPLICE_SITE_REGION CG9044 DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2L	8798781	2L_8798781_INS [dm3] 2L_8798781_INS [dm6]	G	AATAGAAAT	3.913e^-4	0.856	INTERGENIC
3L	13024222	3L_13024222_SNP [dm3] 3L_13031122_SNP [dm6]	T	A	3.913e^-4	0.856	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
X	4835430	X_4835430_SNP [dm3] X_4941397_SNP [dm6]	C	T	3.916e^-4	0.856	INTRON Ptp4E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	14767929	2L_14767929_INS [dm3] 2L_14767929_INS [dm6]	T	TTTAT	3.924e^-4	0.856	DOWNSTREAM CG4701 INTERGENIC
X	5035853	X_5035853_SNP [dm3] X_5141820_SNP [dm6]	T	G	3.932e^-4	0.856	INTRON rg & 1 other
2L	6020821	2L_6020821_SNP [dm3] 2L_6020821_SNP [dm6]	C	G	3.932e^-4	0.856	UPSTREAM CG13996 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	13024099	3L_13024099_SNP [dm3] 3L_13030999_SNP [dm6]	A	G	3.933e^-4	0.856	INTRON CG17672	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	5123507	3R_5123507_SNP [dm3] 3R_9297785_SNP [dm6]	C	T	3.935e^-4	0.856	INTRON CG8861
3L	15946266	3L_15946266_SNP [dm3] 3L_15953166_SNP [dm6]	G	C	3.937e^-4	0.856	UPSTREAM Pka-C3 INTRON Pka-C3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	9409138	3L_9409138_SNP [dm3] 3L_9416038_SNP [dm6]	T	C	3.942e^-4	0.856	SYNONYMOUS_CODING CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
X	8097831	X_8097831_SNP [dm3] X_8203798_SNP [dm6]	T	A	3.943e^-4	0.856	INTRON sdt
2L	10849235	2L_10849235_SNP [dm3] 2L_10849235_SNP [dm6]	A	G	3.943e^-4	0.856	UPSTREAM porin & 1 other INTRON porin
2L	12681612	2L_12681612_SNP [dm3] 2L_12681612_SNP [dm6]	G	A	3.948e^-4	0.856	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
2L	8801402	2L_8801402_SNP [dm3] 2L_8801402_SNP [dm6]	C	G	3.948e^-4	0.856	INTERGENIC
X	18426484	X_18426484_SNP [dm3] X_18532451_SNP [dm6]	T	C	3.957e^-4	0.856	INTRON Bx
3R	16236071	3R_16236071_SNP [dm3] 3R_20410349_SNP [dm6]	T	G	3.957e^-4	0.856	INTRON Gfrl
3R	10038739	3R_10038739_SNP [dm3] 3R_14213017_SNP [dm6]	A	T	3.974e^-4	0.856	INTRON Dop1R1
3L	13381440	3L_13381440_SNP [dm3] 3L_13388340_SNP [dm6]	G	T	3.983e^-4	0.856	UTR_3_PRIME Poc1 UPSTREAM CG10171
3L	4410596	3L_4410596_SNP [dm3] 3L_4410596_SNP [dm6]	T	A	3.983e^-4	0.856	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	23337364	3R_23337364_SNP [dm3] 3R_27511642_SNP [dm6]	C	G	3.990e^-4	0.856	INTERGENIC
X	2610450	X_2610450_SNP [dm3] X_2716417_SNP [dm6]	A	G	3.997e^-4	0.856	NON_SYNONYMOUS_CODING CG2694	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8934580	2L_8934580_SNP [dm3] 2L_8934580_SNP [dm6]	C	G	4.003e^-4	0.856	UPSTREAM Tsp29Fa DOWNSTREAM CG34398 INTRON Tsp29Fa
3L	23115622	3L_23115622_SNP [dm3] 3L_23122522_SNP [dm6]	T	C	4.009e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	16559107	2R_16559107_SNP [dm3] 2R_20671602_SNP [dm6]	C	T	4.013e^-4	0.856	SYNONYMOUS_CODING CG30152 UPSTREAM exu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12314763	2R_12314763_SNP [dm3] 2R_16427258_SNP [dm6]	C	A	4.015e^-4	0.856	INTRON Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12383823	X_12383823_SNP [dm3] X_12489790_SNP [dm6]	C	A	4.016e^-4	0.856	UPSTREAM Lsp1alpha DOWNSTREAM Cpr11A INTERGENIC
3L	7800181	3L_7800181_SNP [dm3] 3L_7807081_SNP [dm6]	G	C	4.023e^-4	0.856	INTRON CG32369	TF binding site mE1_TFBS_sens
2R	15687746	2R_15687746_SNP [dm3] 2R_19800241_SNP [dm6]	T	C	4.035e^-4	0.856	INTERGENIC
3L	15974738	3L_15974738_SNP [dm3] 3L_15981638_SNP [dm6]	C	A	4.036e^-4	0.856	UTR_3_PRIME CG17027 INTRON brm	TF binding site mE1_TFBS_cad
X	8770561	X_8770561_SNP [dm3] X_8876528_SNP [dm6]	C	T	4.040e^-4	0.856	UPSTREAM Moe INTRON Moe
2R	9148478	2R_9148478_SNP [dm3] 2R_13260973_SNP [dm6]	G	T	4.044e^-4	0.856	INTRON CG42319
3R	5264910	3R_5264910_SNP [dm3] 3R_9439188_SNP [dm6]	A	T	4.050e^-4	0.856	INTRON ps
3L	16008400	3L_16008400_SNP [dm3] 3L_16015300_SNP [dm6]	T	C	4.051e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	3111729	3L_3111729_SNP [dm3] 3L_3111729_SNP [dm6]	C	T	4.051e^-4	0.856	UPSTREAM CG45066 INTRON CG45067
2L	10962109	2L_10962109_DEL [dm3] 2L_10962109_DEL [dm6]	ACCCA	A	4.053e^-4	0.856	INTRON dpr2
3R	12991039	3R_12991039_SNP [dm3] 3R_17165317_SNP [dm6]	C	G	4.054e^-4	0.856	INTRON Mur89F
3R	4359960	3R_4359960_SNP [dm3] 3R_8534238_SNP [dm6]	A	C	4.064e^-4	0.856	INTERGENIC
2R	14988863	2R_14988863_SNP [dm3] 2R_19101358_SNP [dm6]	A	C	4.079e^-4	0.856	INTRON 5-HT1A
2R	12674005	2R_12674005_SNP [dm3] 2R_16786500_SNP [dm6]	T	A	4.081e^-4	0.856	UPSTREAM CG5522 INTRON CG5522	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12876070	2R_12876070_SNP [dm3] 2R_16988565_SNP [dm6]	G	T	4.082e^-4	0.856	INTRON Cbp53E
X	5449785	X_5449785_SNP [dm3] X_5555752_SNP [dm6]	G	A	4.082e^-4	0.856	INTRON Vsx2	TF binding site mE1_TFBS_Kr
3R	15668247	3R_15668247_SNP [dm3] 3R_19842525_SNP [dm6]	A	C	4.090e^-4	0.856	DOWNSTREAM CG31459 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22279197	3R_22279197_DEL [dm3] 3R_26453475_DEL [dm6]	AGTGATCGT	A	4.090e^-4	0.856	INTRON CG5447
X	12452583	X_12452583_SNP [dm3] X_12558550_SNP [dm6]	A	C	4.095e^-4	0.856	INTRON CG43921
2R	16009810	2R_16009810_SNP [dm3] 2R_20122305_SNP [dm6]	T	C	4.096e^-4	0.856	INTERGENIC
2R	9798926	2R_9798926_SNP [dm3] 2R_13911421_SNP [dm6]	C	G	4.099e^-4	0.856	UPSTREAM shot INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15921217	3L_15921217_SNP [dm3] 3L_15928117_SNP [dm6]	A	G	4.104e^-4	0.856	SYNONYMOUS_CODING Pka-C3
X	22300105	X_22300105_SNP [dm3] X_22898269_SNP [dm6]	T	A	4.105e^-4	0.856	INTERGENIC	transposable element FlyBase
2R	19366115	2R_19366115_DEL [dm3] 2R_23478592_DEL [dm6]	ACAATG	A	4.109e^-4	0.856	INTRON CG43795
3L	12776073	3L_12776073_SNP [dm3] 3L_12782973_SNP [dm6]	C	T	4.111e^-4	0.856	SYNONYMOUS_CODING CG17666 UPSTREAM CG17666	TF binding site mE1_TFBS_sens
2R	19599197	2R_19599197_SNP [dm3] 2R_23711674_SNP [dm6]	A	C	4.112e^-4	0.856	INTERGENIC
3L	4410601	3L_4410601_SNP [dm3] 3L_4410601_SNP [dm6]	T	C	4.114e^-4	0.856	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	4377231	3L_4377231_SNP [dm3] 3L_4377231_SNP [dm6]	G	A	4.119e^-4	0.856	DOWNSTREAM CR44360 INTRON DopEcR
3L	11444323	3L_11444323_SNP [dm3] 3L_11451223_SNP [dm6]	C	G	4.119e^-4	0.856	INTERGENIC
3R	9884092	3R_9884092_SNP [dm3] 3R_14058370_SNP [dm6]	G	T	4.129e^-4	0.856	INTRON foxo
2R	18675231	2R_18675231_SNP [dm3] 2R_22787726_SNP [dm6]	C	G	4.130e^-4	0.856	INTRON CG42260
X	12099128	X_12099128_SNP [dm3] X_12205095_SNP [dm6]	T	G	4.130e^-4	0.856	INTRON Ten-a
2R	15678838	2R_15678838_SNP [dm3] 2R_19791333_SNP [dm6]	C	A	4.134e^-4	0.856	INTERGENIC
3L	7625155	3L_7625155_SNP [dm3] 3L_7632055_SNP [dm6]	G	T	4.140e^-4	0.856	INTRON CG33275
3L	15932373	3L_15932373_SNP [dm3] 3L_15939273_SNP [dm6]	G	A	4.141e^-4	0.856	INTRON Pka-C3
3L	2324617	3L_2324617_SNP [dm3] 3L_2324617_SNP [dm6]	C	A	4.149e^-4	0.856	INTRON MsR1
3R	5390251	3R_5390251_SNP [dm3] 3R_9564529_SNP [dm6]	C	T	4.154e^-4	0.856	SYNONYMOUS_CODING Vps45 UPSTREAM CG9393	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6008764	2L_6008764_SNP [dm3] 2L_6008764_SNP [dm6]	G	A	4.159e^-4	0.856	SYNONYMOUS_CODING CG9098
2R	18675227	2R_18675227_DEL [dm3] 2R_22787722_DEL [dm6]	AG	A	4.163e^-4	0.856	INTRON CG42260
2R	18675230	2R_18675230_SNP [dm3] 2R_22787725_SNP [dm6]	A	T	4.163e^-4	0.856	INTRON CG42260
2R	18675234	2R_18675234_MNP [dm3] 2R_22787729_MNP [dm6]	GTA	ACC	4.163e^-4	0.856	INTRON CG42260
3L	13015036	3L_13015036_SNP [dm3] 3L_13021936_SNP [dm6]	T	A	4.165e^-4	0.856	UPSTREAM AdenoK INTRON AdenoK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	23138497	3L_23138497_SNP [dm3] 3L_23145397_SNP [dm6]	T	G	4.168e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	17909009	3L_17909009_SNP [dm3] 3L_17915909_SNP [dm6]	A	T	4.190e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	17909057	3L_17909057_SNP [dm3] 3L_17915957_SNP [dm6]	G	A	4.190e^-4	0.856	INTERGENIC	transposable element FlyBase
X	21134503	X_21134503_INS [dm3] X_21263476_INS [dm6]	T	TACCACC	4.202e^-4	0.856	INTRON CG32521
X	799808	X_799808_SNP [dm3] X_905775_SNP [dm6]	G	C	4.202e^-4	0.856	INTRON CG43867	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	805039	X_805039_SNP [dm3] X_911006_SNP [dm6]	C	T	4.202e^-4	0.856	INTRON CG43867	TF binding site BDTNP1_TFBS_twi
X	6062202	X_6062202_SNP [dm3] X_6168169_SNP [dm6]	G	C	4.211e^-4	0.856	INTRON Ca-alpha1T
3L	14695816	3L_14695816_SNP [dm3] 3L_14702716_SNP [dm6]	T	A	4.211e^-4	0.856	INTRON ome
2L	18527617	2L_18527617_SNP [dm3] 2L_18527617_SNP [dm6]	T	C	4.215e^-4	0.856	SYNONYMOUS_CODING CG10211	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23476266	3R_23476266_SNP [dm3] 3R_27650544_SNP [dm6]	T	G	4.216e^-4	0.856	DOWNSTREAM tau INTRON tau
2R	3299398	2R_3299398_SNP [dm3] 2R_7411893_SNP [dm6]	A	C	4.223e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10689560	3R_10689560_SNP [dm3] 3R_14863838_SNP [dm6]	G	C	4.234e^-4	0.856	INTRON btsz
3L	9715634	3L_9715634_SNP [dm3] 3L_9722534_SNP [dm6]	T	A	4.238e^-4	0.856	SYNONYMOUS_CODING nbs UPSTREAM defl	TF binding site mE1_TFBS_sens
2L	9948307	2L_9948307_SNP [dm3] 2L_9948307_SNP [dm6]	G	C	4.247e^-4	0.856	UPSTREAM CG5853 INTERGENIC	TF binding site mE1_TFBS_inv
3R	22735697	3R_22735697_SNP [dm3] 3R_26909975_SNP [dm6]	A	G	4.251e^-4	0.856	SYNONYMOUS_CODING T48 DOWNSTREAM Ets97D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20840478	3R_20840478_SNP [dm3] 3R_25014756_SNP [dm6]	G	A	4.252e^-4	0.856	NON_SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	5827073	3L_5827073_SNP [dm3] 3L_5833973_SNP [dm6]	T	C	4.257e^-4	0.856	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	5413763	2R_5413763_SNP [dm3] 2R_9526258_SNP [dm6]	A	G	4.259e^-4	0.856	INTRON brp
3L	12853483	3L_12853483_SNP [dm3] 3L_12860383_SNP [dm6]	A	G	4.260e^-4	0.856	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3L	14445486	3L_14445486_SNP [dm3] 3L_14452386_SNP [dm6]	C	A	4.265e^-4	0.856	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5123504	3R_5123504_SNP [dm3] 3R_9297782_SNP [dm6]	A	G	4.265e^-4	0.856	INTRON CG8861
2R	3650622	2R_3650622_SNP [dm3] 2R_7763117_SNP [dm6]	G	A	4.266e^-4	0.856	INTRON CG30497 & 1 other
3L	2674287	3L_2674287_SNP [dm3] 3L_2674287_SNP [dm6]	G	A	4.276e^-4	0.856	INTRON Fife
3L	9409008	3L_9409008_SNP [dm3] 3L_9415908_SNP [dm6]	A	G	4.284e^-4	0.856	UTR_3_PRIME CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	4.284e^-4	0.856	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16990214	2R_16990214_INS [dm3] 2R_21102709_INS [dm6]	T	TT	4.292e^-4	0.856	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	4208104	X_4208104_SNP [dm3] X_4314071_SNP [dm6]	A	G	4.301e^-4	0.856	DOWNSTREAM mei-9 INTRON CR44957
3R	7461443	3R_7461443_SNP [dm3] 3R_11635721_SNP [dm6]	C	T	4.302e^-4	0.856	SYNONYMOUS_CODING Csk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19402895	2R_19402895_SNP [dm3] 2R_23515372_SNP [dm6]	G	A	4.302e^-4	0.856	INTERGENIC
2R	7371094	2R_7371094_SNP [dm3] 2R_11483589_SNP [dm6]	G	A	4.305e^-4	0.856	INTRON inv
2L	3388543	2L_3388543_SNP [dm3] 2L_3388543_SNP [dm6]	C	T	4.321e^-4	0.856	UPSTREAM Sfp23F & 2 others INTERGENIC
X	12088850	X_12088850_SNP [dm3] X_12194817_SNP [dm6]	C	A	4.332e^-4	0.856	INTRON Ten-a
3L	2201262	3L_2201262_SNP [dm3] 3L_2201262_SNP [dm6]	G	A	4.335e^-4	0.856	INTERGENIC
X	22298618	X_22298618_INS [dm3] X_22896782_INS [dm6]	T	TTC	4.335e^-4	0.856	INTERGENIC	transposable element FlyBase
3R	12961233	3R_12961233_SNP [dm3] 3R_17135511_SNP [dm6]	G	A	4.337e^-4	0.856	UPSTREAM CG5246 DOWNSTREAM CG31267 INTERGENIC
3L	13606619	3L_13606619_SNP [dm3] 3L_13613519_SNP [dm6]	G	A	4.338e^-4	0.856	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	6151071	2L_6151071_SNP [dm3] 2L_6151071_SNP [dm6]	C	T	4.341e^-4	0.856	UPSTREAM Muc26B INTERGENIC
3R	5364556	3R_5364556_SNP [dm3] 3R_9538834_SNP [dm6]	G	A	4.344e^-4	0.856	UTR_3_PRIME mura	TF binding site mE1_TFBS_cad
3R	25167563	3R_25167563_SNP [dm3] 3R_29341841_SNP [dm6]	A	T	4.346e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11778517	X_11778517_SNP [dm3] X_11884484_SNP [dm6]	G	A	4.346e^-4	0.856	UTR_5_PRIME CG10353 INTRON CG10353
X	4715301	X_4715301_SNP [dm3] X_4821268_SNP [dm6]	T	C	4.354e^-4	0.856	INTERGENIC
3L	23076052	3L_23076052_SNP [dm3] 3L_23082952_SNP [dm6]	C	G	4.360e^-4	0.856	INTERGENIC
2R	6120712	2R_6120712_SNP [dm3] 2R_10233207_SNP [dm6]	T	C	4.361e^-4	0.856	SYNONYMOUS_CODING Hr46 UTR_5_PRIME Hr46 UTR_3_PRIME CG12912 DOWNSTREAM CG12912 INTRON Hr46	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	15107292	2R_15107292_SNP [dm3] 2R_19219787_SNP [dm6]	G	A	4.363e^-4	0.856	INTRON hppy
3L	21293167	3L_21293167_SNP [dm3] 3L_21300067_SNP [dm6]	T	A	4.363e^-4	0.856	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10224592	3R_10224592_SNP [dm3] 3R_14398870_SNP [dm6]	G	A	4.365e^-4	0.856	INTRON cv-c
2R	15797218	2R_15797218_SNP [dm3] 2R_19909713_SNP [dm6]	G	C	4.382e^-4	0.856	DOWNSTREAM CR44573 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5930457	2L_5930457_SNP [dm3] 2L_5930457_SNP [dm6]	A	C	4.383e^-4	0.856	INTRON dsf
2R	15693889	2R_15693889_SNP [dm3] 2R_19806384_SNP [dm6]	A	C	4.384e^-4	0.856	INTERGENIC
3R	6278429	3R_6278429_SNP [dm3] 3R_10452707_SNP [dm6]	C	T	4.402e^-4	0.856	INTERGENIC
3L	23081955	3L_23081955_SNP [dm3] 3L_23088855_SNP [dm6]	G	A	4.403e^-4	0.856	INTERGENIC	transposable element FlyBase
3L	3137754	3L_3137754_SNP [dm3] 3L_3137754_SNP [dm6]	A	C	4.417e^-4	0.856	INTRON CG11537
3R	25030243	3R_25030243_SNP [dm3] 3R_29204521_SNP [dm6]	C	G	4.418e^-4	0.856	UPSTREAM CG14508 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7719578	2R_7719578_SNP [dm3] 2R_11832073_SNP [dm6]	A	G	4.419e^-4	0.856	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11199708	3L_11199708_SNP [dm3] 3L_11206608_SNP [dm6]	G	A	4.423e^-4	0.856	UTR_3_PRIME Ube3a UPSTREAM Plod	TF binding site mE1_TFBS_cad
3L	9824838	3L_9824838_SNP [dm3] 3L_9831738_SNP [dm6]	A	T	4.427e^-4	0.856	INTRON CG43897
3R	25167560	3R_25167560_SNP [dm3] 3R_29341838_SNP [dm6]	A	C	4.430e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13912366	3R_13912366_SNP [dm3] 3R_18086644_SNP [dm6]	A	T	4.440e^-4	0.856	INTERGENIC
3L	23141535	3L_23141535_SNP [dm3] 3L_23148435_SNP [dm6]	G	T	4.441e^-4	0.856	SYNONYMOUS_CODING CG32350
3L	9283279	3L_9283279_SNP [dm3] 3L_9290179_SNP [dm6]	C	G	4.446e^-4	0.856	INTERGENIC
2R	12819239	2R_12819239_SNP [dm3] 2R_16931734_SNP [dm6]	A	G	4.456e^-4	0.856	INTRON Pkc53E
3L	23170142	3L_23170142_SNP [dm3] 3L_23177042_SNP [dm6]	G	T	4.457e^-4	0.856	INTRON CG34031	transposable element FlyBase
X	3426860	X_3426860_SNP [dm3] X_3532827_SNP [dm6]	T	G	4.458e^-4	0.856	INTRON CG32791
3R	5648105	3R_5648105_SNP [dm3] 3R_9822383_SNP [dm6]	C	A	4.462e^-4	0.856	DOWNSTREAM CG34302 INTERGENIC
3L	9948936	3L_9948936_SNP [dm3] 3L_9955836_SNP [dm6]	C	T	4.462e^-4	0.856	INTRON CG34356
2R	16020141	2R_16020141_SNP [dm3] 2R_20132636_SNP [dm6]	C	T	4.467e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24204039	3R_24204039_SNP [dm3] 3R_28378317_SNP [dm6]	G	A	4.470e^-4	0.856	INTERGENIC
3L	8399533	3L_8399533_SNP [dm3] 3L_8406433_SNP [dm6]	G	C	4.474e^-4	0.856	NON_SYNONYMOUS_CODING CG13667 DOWNSTREAM Oseg1	TF binding site mE1_TFBS_sens
3R	14059169	3R_14059169_SNP [dm3] 3R_18233447_SNP [dm6]	A	C	4.486e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3L	16012539	3L_16012539_SNP [dm3] 3L_16019439_SNP [dm6]	T	C	4.490e^-4	0.856	DOWNSTREAM CR43949 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19985987	2L_19985987_SNP [dm3] 2L_19985987_SNP [dm6]	G	C	4.491e^-4	0.856	INTRON CG43861
3L	8504896	3L_8504896_SNP [dm3] 3L_8511796_SNP [dm6]	T	C	4.491e^-4	0.856	NON_SYNONYMOUS_CODING CG6745 UPSTREAM CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4410589	3L_4410589_SNP [dm3] 3L_4410589_SNP [dm6]	T	G	4.493e^-4	0.856	INTRON DOR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	10243415	3L_10243415_SNP [dm3] 3L_10250315_SNP [dm6]	T	C	4.497e^-4	0.856	INTERGENIC
3L	14212392	3L_14212392_SNP [dm3] 3L_14219292_SNP [dm6]	C	A	4.499e^-4	0.856	UPSTREAM nuf DOWNSTREAM CG7768 INTRON nuf	TF binding site mE1_TFBS_HSA
X	4085836	X_4085836_SNP [dm3] X_4191803_SNP [dm6]	G	A	4.505e^-4	0.856	INTRON Fas2
3R	17995580	3R_17995580_SNP [dm3] 3R_22169858_SNP [dm6]	T	G	4.505e^-4	0.856	INTRON SKIP
3L	14569458	3L_14569458_SNP [dm3] 3L_14576358_SNP [dm6]	A	G	4.515e^-4	0.856	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13026040	3L_13026040_SNP [dm3] 3L_13032940_SNP [dm6]	T	C	4.522e^-4	0.856	INTRON CG17672 EXON CR45157	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	1848310	3L_1848310_SNP [dm3] 3L_1848310_SNP [dm6]	A	C	4.526e^-4	0.856	INTERGENIC
3L	5089169	3L_5089169_DEL [dm3] 3L_5089169_DEL [dm6]	ATACTCTTTTAACTCATTCA...	A	4.529e^-4	0.856	INTERGENIC
3R	10038916	3R_10038916_SNP [dm3] 3R_14213194_SNP [dm6]	A	G	4.536e^-4	0.856	INTRON Dop1R1
2L	17640267	2L_17640267_SNP [dm3] 2L_17640267_SNP [dm6]	A	T	4.543e^-4	0.856	INTERGENIC
X	21847448	X_21847448_SNP [dm3] X_22445612_SNP [dm6]	T	C	4.544e^-4	0.856	INTRON CG14621
2R	19601252	2R_19601252_SNP [dm3] 2R_23713729_SNP [dm6]	G	A	4.548e^-4	0.856	UPSTREAM Sesn INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4377232	3L_4377232_SNP [dm3] 3L_4377232_SNP [dm6]	C	A	4.560e^-4	0.856	DOWNSTREAM CR44360 INTRON DopEcR
3L	12519071	3L_12519071_SNP [dm3] 3L_12525971_SNP [dm6]	A	T	4.560e^-4	0.856	DOWNSTREAM ver INTRON eIF-2beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13570318	3R_13570318_SNP [dm3] 3R_17744596_SNP [dm6]	C	A	4.569e^-4	0.856	INTRON TyrRII	TF binding site mE1_TFBS_cad
3L	9627306	3L_9627306_SNP [dm3] 3L_9634206_SNP [dm6]	C	A	4.572e^-4	0.856	INTRON fry
2L	9558609	2L_9558609_SNP [dm3] 2L_9558609_SNP [dm6]	G	C	4.575e^-4	0.856	INTRON jp
2L	19963674	2L_19963674_SNP [dm3] 2L_19963674_SNP [dm6]	C	A	4.577e^-4	0.856	SYNONYMOUS_CODING CG16772 UPSTREAM CG10680 DOWNSTREAM CR45701
2R	17745867	2R_17745867_SNP [dm3] 2R_21858362_SNP [dm6]	C	G	4.580e^-4	0.856	INTERGENIC
2R	9959091	2R_9959091_SNP [dm3] 2R_14071586_SNP [dm6]	G	A	4.583e^-4	0.856	INTRON Prosap
3L	9714404	3L_9714404_SNP [dm3] 3L_9721304_SNP [dm6]	C	T	4.585e^-4	0.856	SYNONYMOUS_CODING nbs UTR_3_PRIME nbs DOWNSTREAM CG14174	TF binding site mE1_TFBS_HSA
X	10110446	X_10110446_SNP [dm3] X_10216413_SNP [dm6]	T	G	4.589e^-4	0.856	UTR_3_PRIME l_1_G0230 INTRON CG2962
X	808504	X_808504_SNP [dm3] X_914471_SNP [dm6]	G	A	4.593e^-4	0.856	INTRON CG43867
2R	15998641	2R_15998641_SNP [dm3] 2R_20111136_SNP [dm6]	A	C	4.606e^-4	0.856	UPSTREAM 18w INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3L	13024912	3L_13024912_SNP [dm3] 3L_13031812_SNP [dm6]	C	T	4.608e^-4	0.856	DOWNSTREAM CR45157 INTRON CG17672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	16017395	3L_16017395_SNP [dm3] 3L_16024295_SNP [dm6]	G	A	4.614e^-4	0.856	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10471000	3L_10471000_SNP [dm3] 3L_10477900_SNP [dm6]	G	T	4.616e^-4	0.856	INTERGENIC
3L	9252365	3L_9252365_SNP [dm3] 3L_9259265_SNP [dm6]	G	A	4.624e^-4	0.856	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	15361140	3R_15361140_SNP [dm3] 3R_19535418_SNP [dm6]	G	C	4.631e^-4	0.856	INTRON Dys
2R	19167711	2R_19167711_SNP [dm3] 2R_23280188_SNP [dm6]	G	A	4.631e^-4	0.856	INTERGENIC	TF binding site mE1_TFBS_inv

By genomic position
Variant impact
Gene name

pc_Surv_MeHg_10_CAFF phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results