DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.010e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.060538
In_2R_NS	0.005681

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	6.9916	0.0303
In_2R_NS	11.0145	0.0041
In_3R_K	5.6038	0.0607
In_3R_Mo	5.6429	0.0595

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2083 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	19412618	2L_19412618_SNP [dm3] 2L_19412618_SNP [dm6]	T	C	3.860e^-7	0.724	UPSTREAM Pax INTRON Pax
X	15009353	X_15009353_SNP [dm3] X_15115320_SNP [dm6]	T	C	8.278e^-7	0.756	SYNONYMOUS_CODING Cyp4s3
X	15009264	X_15009264_SNP [dm3] X_15115231_SNP [dm6]	C	G	1.209e^-6	0.756	NON_SYNONYMOUS_CODING Cyp4s3
2R	14012048	2R_14012048_SNP [dm3] 2R_18124543_SNP [dm6]	C	G	2.227e^-6	0.783	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
X	15453776	X_15453776_SNP [dm3] X_15559743_SNP [dm6]	C	A	2.332e^-6	0.783	INTERGENIC
X	16010164	X_16010164_SNP [dm3] X_16116131_SNP [dm6]	T	A	4.565e^-6	0.783	INTERGENIC
X	15009365	X_15009365_SNP [dm3] X_15115332_SNP [dm6]	C	T	4.841e^-6	0.783	SYNONYMOUS_CODING Cyp4s3
X	15009356	X_15009356_SNP [dm3] X_15115323_SNP [dm6]	C	T	5.061e^-6	0.783	SYNONYMOUS_CODING Cyp4s3
X	16010160	X_16010160_SNP [dm3] X_16116127_SNP [dm6]	G	T	5.430e^-6	0.783	INTERGENIC
X	16010161	X_16010161_SNP [dm3] X_16116128_SNP [dm6]	T	A	5.430e^-6	0.783	INTERGENIC
3R	10885534	3R_10885534_SNP [dm3] 3R_15059812_SNP [dm6]	G	A	5.468e^-6	0.783	INTRON dpr9
2R	14012035	2R_14012035_SNP [dm3] 2R_18124530_SNP [dm6]	C	T	6.387e^-6	0.783	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	1823977	2L_1823977_SNP [dm3] 2L_1823977_SNP [dm6]	G	A	7.448e^-6	0.783	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
X	16010168	X_16010168_SNP [dm3] X_16116135_SNP [dm6]	T	C	7.989e^-6	0.783	INTERGENIC
X	16010151	X_16010151_DEL [dm3] X_16116118_DEL [dm6]	TC	T	8.960e^-6	0.783	INTERGENIC
2L	7199181	2L_7199181_DEL [dm3] 2L_7199181_DEL [dm6]	CA	T	9.054e^-6	0.783	INTRON CG4502
X	19800301	X_19800301_SNP [dm3] X_19906268_SNP [dm6]	G	T	1.070e^-5	0.783	UTR_3_PRIME Hers
3R	12248271	3R_12248271_SNP [dm3] 3R_16422549_SNP [dm6]	T	C	1.110e^-5	0.783	INTERGENIC	regulatory region REDfly_CRMs
2L	1820129	2L_1820129_SNP [dm3] 2L_1820129_SNP [dm6]	G	C	1.168e^-5	0.783	INTERGENIC
3L	1277532	3L_1277532_SNP [dm3] 3L_1277532_SNP [dm6]	T	C	1.216e^-5	0.783	INTRON CG32333
2L	5934698	2L_5934698_SNP [dm3] 2L_5934698_SNP [dm6]	T	C	1.226e^-5	0.783	INTRON dsf	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	15009717	X_15009717_SNP [dm3] X_15115684_SNP [dm6]	G	A	1.253e^-5	0.783	SYNONYMOUS_CODING Cyp4s3
2R	14012123	2R_14012123_SNP [dm3] 2R_18124618_SNP [dm6]	C	T	1.309e^-5	0.783	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA
2L	1434480	2L_1434480_SNP [dm3] 2L_1434480_SNP [dm6]	G	T	1.314e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12250664	3R_12250664_SNP [dm3] 3R_16424942_SNP [dm6]	A	T	1.345e^-5	0.783	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	1820635	2L_1820635_SNP [dm3] 2L_1820635_SNP [dm6]	G	A	1.354e^-5	0.783	DOWNSTREAM CG31933 INTERGENIC
2L	1434481	2L_1434481_SNP [dm3] 2L_1434481_SNP [dm6]	A	G	1.364e^-5	0.783	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14809906	2R_14809906_SNP [dm3] 2R_18922401_SNP [dm6]	G	C	1.425e^-5	0.783	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18583911	2R_18583911_SNP [dm3] 2R_22696406_SNP [dm6]	T	G	1.430e^-5	0.783	INTRON robo
X	17505888	X_17505888_SNP [dm3] X_17611855_SNP [dm6]	C	A	1.463e^-5	0.783	INTERGENIC
2R	7374927	2R_7374927_SNP [dm3] 2R_11487422_SNP [dm6]	A	G	1.516e^-5	0.783	INTRON inv
3L	5983698	3L_5983698_SNP [dm3] 3L_5990598_SNP [dm6]	G	A	1.517e^-5	0.783	INTERGENIC
X	19795320	X_19795320_SNP [dm3] X_19901287_SNP [dm6]	C	T	1.552e^-5	0.783	NON_SYNONYMOUS_CODING Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	6840769	X_6840769_SNP [dm3] X_6946736_SNP [dm6]	C	T	1.556e^-5	0.783	INTRON CG14431
3R	12250654	3R_12250654_SNP [dm3] 3R_16424932_SNP [dm6]	A	G	1.565e^-5	0.783	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	19286329	2L_19286329_SNP [dm3] 2L_19286329_SNP [dm6]	G	T	1.633e^-5	0.783	INTERGENIC
3L	12238431	3L_12238431_DEL [dm3] 3L_12245331_DEL [dm6]	AATGGCCCGAA...	A	1.689e^-5	0.783	DOWNSTREAM CR43991 INTRON app
3L	10283129	3L_10283129_SNP [dm3] 3L_10290029_SNP [dm6]	C	A	1.710e^-5	0.783	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14879666	3L_14879666_SNP [dm3] 3L_14886566_SNP [dm6]	T	G	1.735e^-5	0.783	DOWNSTREAM CR44702 INTERGENIC
3R	10486695	3R_10486695_SNP [dm3] 3R_14660973_SNP [dm6]	C	T	1.761e^-5	0.783	UTR_3_PRIME Hexim DOWNSTREAM Rad17
2L	5923670	2L_5923670_SNP [dm3] 2L_5923670_SNP [dm6]	A	C	1.804e^-5	0.783	UPSTREAM CG9016 DOWNSTREAM bchs INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4104610	2L_4104610_SNP [dm3] 2L_4104610_SNP [dm6]	G	A	1.872e^-5	0.783	INTRON ed
X	16010144	X_16010144_SNP [dm3] X_16116111_SNP [dm6]	A	G	1.978e^-5	0.783	INTERGENIC
3R	12250650	3R_12250650_SNP [dm3] 3R_16424928_SNP [dm6]	T	A	2.006e^-5	0.783	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	16472261	2L_16472261_SNP [dm3] 2L_16472261_SNP [dm6]	G	T	2.014e^-5	0.783	SYNONYMOUS_CODING dac	TF binding site mE1_TFBS_cad
2R	18985930	2R_18985930_SNP [dm3] 2R_23098407_SNP [dm6]	A	C	2.027e^-5	0.783	INTERGENIC
X	19800262	X_19800262_SNP [dm3] X_19906229_SNP [dm6]	A	C	2.027e^-5	0.783	UTR_3_PRIME Hers
3L	2959712	3L_2959712_SNP [dm3] 3L_2959712_SNP [dm6]	A	T	2.034e^-5	0.783	DOWNSTREAM CG34025 & 1 other INTERGENIC
3R	9956564	3R_9956564_SNP [dm3] 3R_14130842_SNP [dm6]	T	A	2.133e^-5	0.783	SYNONYMOUS_CODING CG14356 DOWNSTREAM RpII140	TF binding site mE1_TFBS_cad
3R	6458723	3R_6458723_SNP [dm3] 3R_10633001_SNP [dm6]	A	G	2.165e^-5	0.783	INTRON hth	TF binding site mE1_TFBS_cad
3R	6456997	3R_6456997_SNP [dm3] 3R_10631275_SNP [dm6]	A	C	2.182e^-5	0.783	INTRON hth	TF binding site mE1_TFBS_cad
3R	9648695	3R_9648695_SNP [dm3] 3R_13822973_SNP [dm6]	G	C	2.191e^-5	0.783	INTERGENIC
X	15994868	X_15994868_DEL [dm3] X_16100835_DEL [dm6]	TT	T	2.233e^-5	0.783	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16751380	3L_16751380_SNP [dm3] 3L_16758280_SNP [dm6]	G	T	2.312e^-5	0.783	INTERGENIC
2L	17603404	2L_17603404_SNP [dm3] 2L_17603404_SNP [dm6]	T	G	2.394e^-5	0.783	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	12251001	3R_12251001_SNP [dm3] 3R_16425279_SNP [dm6]	A	G	2.394e^-5	0.783	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	8480063	2L_8480063_SNP [dm3] 2L_8480063_SNP [dm6]	C	G	2.423e^-5	0.783	INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19800303	X_19800303_SNP [dm3] X_19906270_SNP [dm6]	C	G	2.500e^-5	0.783	UTR_3_PRIME Hers
3R	25785297	3R_25785297_SNP [dm3] 3R_29959575_SNP [dm6]	G	C	2.502e^-5	0.783	INTRON TkR99D
2R	6207920	2R_6207920_SNP [dm3] 2R_10320415_SNP [dm6]	C	T	2.505e^-5	0.783	INTRON Ndg & 1 other
X	1539515	X_1539515_SNP [dm3] X_1645482_SNP [dm6]	G	A	2.592e^-5	0.797	DOWNSTREAM br INTRON Mur2B & 1 other
X	19800289	X_19800289_SNP [dm3] X_19906256_SNP [dm6]	T	A	2.674e^-5	0.809	UTR_3_PRIME Hers
2L	6009463	2L_6009463_SNP [dm3] 2L_6009463_SNP [dm6]	G	A	2.900e^-5	0.846	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
3L	21615063	3L_21615063_SNP [dm3] 3L_21621963_SNP [dm6]	A	T	2.988e^-5	0.846	SYNONYMOUS_CODING CG7166
3L	1817356	3L_1817356_SNP [dm3] 3L_1817356_SNP [dm6]	C	A	3.014e^-5	0.846	INTRON GV1
3L	10283149	3L_10283149_SNP [dm3] 3L_10290049_SNP [dm6]	C	T	3.105e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5736952	2L_5736952_SNP [dm3] 2L_5736952_SNP [dm6]	A	C	3.253e^-5	0.846	INTRON CG11030 & 1 other
2L	1792767	2L_1792767_SNP [dm3] 2L_1792767_SNP [dm6]	G	T	3.301e^-5	0.846	NON_SYNONYMOUS_CODING Gr22b UPSTREAM Gr22c DOWNSTREAM Gr22a	regulatory region REDfly_CRMs
2L	16170031	2L_16170031_SNP [dm3] 2L_16170031_SNP [dm6]	C	T	3.330e^-5	0.846	INTRON Ca-alpha1D
X	15009732	X_15009732_SNP [dm3] X_15115699_SNP [dm6]	G	A	3.408e^-5	0.846	SYNONYMOUS_CODING Cyp4s3
3R	27168511	3R_27168511_SNP [dm3] 3R_31342789_SNP [dm6]	T	A	3.502e^-5	0.846	INTRON CG34347
X	19800846	X_19800846_DEL [dm3] X_19906813_DEL [dm6]	TA	T	3.539e^-5	0.846	UTR_3_PRIME Hers DOWNSTREAM Hers	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4348757	2L_4348757_SNP [dm3] 2L_4348757_SNP [dm6]	C	T	3.607e^-5	0.846	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8718128	2R_8718128_SNP [dm3] 2R_12830623_SNP [dm6]	A	G	3.617e^-5	0.846	INTERGENIC
2L	13690722	2L_13690722_SNP [dm3] 2L_13690722_SNP [dm6]	G	A	3.674e^-5	0.846	INTRON CG31814
2L	5736943	2L_5736943_SNP [dm3] 2L_5736943_SNP [dm6]	G	T	3.690e^-5	0.846	SPLICE_SITE_REGION CG11147 INTRON CG11030 & 1 other
3R	10883642	3R_10883642_SNP [dm3] 3R_15057920_SNP [dm6]	A	G	3.702e^-5	0.846	INTRON dpr9
3L	16030080	3L_16030080_SNP [dm3] 3L_16036980_SNP [dm6]	G	A	3.805e^-5	0.846	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	17897118	X_17897118_SNP [dm3] X_18003085_SNP [dm6]	T	A	3.807e^-5	0.846	INTRON Sh
3L	5984163	3L_5984163_SNP [dm3] 3L_5991063_SNP [dm6]	A	G	3.836e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	6224157	X_6224157_SNP [dm3] X_6330124_SNP [dm6]	C	G	3.857e^-5	0.846	UPSTREAM CG42240 DOWNSTREAM CG15894 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12250667	3R_12250667_SNP [dm3] 3R_16424945_SNP [dm6]	G	A	3.894e^-5	0.846	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3L	4505054	3L_4505054_SNP [dm3] 3L_4505054_SNP [dm6]	C	T	3.994e^-5	0.846	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
X	10346166	X_10346166_SNP [dm3] X_10452133_SNP [dm6]	T	A	4.004e^-5	0.846	INTRON CG32683
X	1542845	X_1542845_SNP [dm3] X_1648812_SNP [dm6]	G	A	4.049e^-5	0.846	SYNONYMOUS_CODING br UTR_3_PRIME br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6458797	3R_6458797_SNP [dm3] 3R_10633075_SNP [dm6]	A	G	4.060e^-5	0.846	INTRON hth	TF binding site mE1_TFBS_cad
3R	25599748	3R_25599748_SNP [dm3] 3R_29774026_SNP [dm6]	T	A	4.073e^-5	0.846	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	17896711	X_17896711_SNP [dm3] X_18002678_SNP [dm6]	A	G	4.242e^-5	0.846	INTRON Sh
2L	3523392	2L_3523392_SNP [dm3] 2L_3523392_SNP [dm6]	A	T	4.281e^-5	0.846	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
X	6126797	X_6126797_INS [dm3] X_6232764_INS [dm6]	G	GCCAAA	4.307e^-5	0.846	UTR_3_PRIME CG14446
2L	1820226	2L_1820226_SNP [dm3] 2L_1820226_SNP [dm6]	T	A	4.440e^-5	0.846	INTERGENIC
X	15009726	X_15009726_SNP [dm3] X_15115693_SNP [dm6]	A	T	4.489e^-5	0.846	SYNONYMOUS_CODING Cyp4s3
2R	17760464	2R_17760464_SNP [dm3] 2R_21872959_SNP [dm6]	T	C	4.529e^-5	0.846	INTRON Fili	TF binding site mE1_TFBS_D
2L	9427305	2L_9427305_SNP [dm3] 2L_9427305_SNP [dm6]	A	T	4.531e^-5	0.846	UPSTREAM CG42847 DOWNSTREAM Mco1 INTRON Fbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18844373	2R_18844373_SNP [dm3] 2R_22956850_SNP [dm6]	G	T	4.532e^-5	0.846	DOWNSTREAM CR44780 INTERGENIC
X	16804970	X_16804970_SNP [dm3] X_16910937_SNP [dm6]	T	C	4.763e^-5	0.846	INTRON CR44754
X	8013096	X_8013096_SNP [dm3] X_8119063_SNP [dm6]	T	C	4.791e^-5	0.846	UTR_3_PRIME CG1575 DOWNSTREAM CG2260
X	8013106	X_8013106_SNP [dm3] X_8119073_SNP [dm6]	G	C	4.791e^-5	0.846	UTR_3_PRIME CG1575 DOWNSTREAM CG2260
3L	13260742	3L_13260742_SNP [dm3] 3L_13267642_SNP [dm6]	T	G	4.842e^-5	0.846	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23431307	3R_23431307_SNP [dm3] 3R_27605585_SNP [dm6]	G	T	4.852e^-5	0.846	INTRON dsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15594237	X_15594237_SNP [dm3] X_15700204_SNP [dm6]	T	A	4.907e^-5	0.846	UTR_3_PRIME CG9240 DOWNSTREAM CG8128
2L	5653846	2L_5653846_SNP [dm3] 2L_5653846_SNP [dm6]	T	G	4.927e^-5	0.846	INTRON CG31646
2L	3523508	2L_3523508_SNP [dm3] 2L_3523508_SNP [dm6]	G	C	4.984e^-5	0.846	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	12248340	3R_12248340_SNP [dm3] 3R_16422618_SNP [dm6]	C	G	5.030e^-5	0.846	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z
3R	6458776	3R_6458776_SNP [dm3] 3R_10633054_SNP [dm6]	G	A	5.112e^-5	0.846	INTRON hth	TF binding site mE1_TFBS_cad
3L	4504421	3L_4504421_SNP [dm3] 3L_4504421_SNP [dm6]	T	G	5.139e^-5	0.846	SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
X	10346133	X_10346133_SNP [dm3] X_10452100_SNP [dm6]	T	C	5.190e^-5	0.846	INTRON CG32683
X	6126795	X_6126795_INS [dm3] X_6232762_INS [dm6]	A	AGGAAG	5.395e^-5	0.846	UTR_3_PRIME CG14446
3R	23379843	3R_23379843_SNP [dm3] 3R_27554121_SNP [dm6]	T	C	5.451e^-5	0.846	INTRON Klp98A
2L	20878208	2L_20878208_SNP [dm3] 2L_20878208_SNP [dm6]	C	G	5.480e^-5	0.846	INTRON sky & 1 other	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	3811543	2L_3811543_SNP [dm3] 2L_3811543_SNP [dm6]	G	C	5.509e^-5	0.846	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3811546	2L_3811546_SNP [dm3] 2L_3811546_SNP [dm6]	C	T	5.509e^-5	0.846	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	952339	3R_952339_SNP [dm3] 3R_5126617_SNP [dm6]	A	C	5.555e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	3531355	X_3531355_SNP [dm3] X_3637322_SNP [dm6]	C	T	5.734e^-5	0.846	INTRON AstA-R1
2L	3523371	2L_3523371_SNP [dm3] 2L_3523371_SNP [dm6]	T	C	5.737e^-5	0.846	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
2L	6549778	2L_6549778_SNP [dm3] 2L_6549778_SNP [dm6]	G	C	5.741e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9427289	2L_9427289_SNP [dm3] 2L_9427289_SNP [dm6]	G	T	5.742e^-5	0.846	UPSTREAM CG42847 DOWNSTREAM Mco1 INTRON Fbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9738017	2R_9738017_SNP [dm3] 2R_13850512_SNP [dm6]	G	C	5.743e^-5	0.846	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
X	3531314	X_3531314_SNP [dm3] X_3637281_SNP [dm6]	G	A	5.750e^-5	0.846	INTRON AstA-R1
3L	1134966	3L_1134966_SNP [dm3] 3L_1134966_SNP [dm6]	G	A	5.853e^-5	0.846	INTERGENIC	regulatory region REDfly_CRMs
X	15596002	X_15596002_SNP [dm3] X_15701969_SNP [dm6]	T	C	5.860e^-5	0.846	UTR_3_PRIME Pis UPSTREAM CG9240
2R	8253150	2R_8253150_SNP [dm3] 2R_12365645_SNP [dm6]	T	G	5.880e^-5	0.846	INTRON CR33013
2R	14012011	2R_14012011_SNP [dm3] 2R_18124506_SNP [dm6]	A	T	5.886e^-5	0.846	UPSTREAM stau INTRON stau	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	1817385	3L_1817385_SNP [dm3] 3L_1817385_SNP [dm6]	G	T	5.987e^-5	0.846	INTRON GV1
2L	3811518	2L_3811518_SNP [dm3] 2L_3811518_SNP [dm6]	G	C	6.079e^-5	0.846	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	19645347	2R_19645347_SNP [dm3] 2R_23757824_SNP [dm6]	T	C	6.089e^-5	0.846	SYNONYMOUS_CODING CG9850
2L	7199166	2L_7199166_SNP [dm3] 2L_7199166_SNP [dm6]	T	C	6.116e^-5	0.846	INTRON CG4502
X	15595975	X_15595975_SNP [dm3] X_15701942_SNP [dm6]	A	G	6.130e^-5	0.846	UTR_3_PRIME Pis UPSTREAM CG9240
3L	1817387	3L_1817387_SNP [dm3] 3L_1817387_SNP [dm6]	A	G	6.190e^-5	0.846	INTRON GV1
2R	17760427	2R_17760427_DEL [dm3] 2R_21872922_DEL [dm6]	AA	A	6.210e^-5	0.846	INTRON Fili	TF binding site mE1_TFBS_D
2R	6207942	2R_6207942_SNP [dm3] 2R_10320437_SNP [dm6]	G	A	6.222e^-5	0.846	INTRON Ndg & 1 other
3R	9673226	3R_9673226_SNP [dm3] 3R_13847504_SNP [dm6]	C	G	6.228e^-5	0.846	INTERGENIC	TF binding site mE1_TFBS_cad
3R	8802272	3R_8802272_SNP [dm3] 3R_12976550_SNP [dm6]	G	T	6.234e^-5	0.846	INTRON CG7381
X	15454543	X_15454543_SNP [dm3] X_15560510_SNP [dm6]	A	C	6.260e^-5	0.846	INTERGENIC
3R	12250673	3R_12250673_SNP [dm3] 3R_16424951_SNP [dm6]	T	C	6.261e^-5	0.846	DOWNSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2R	14810342	2R_14810342_INS [dm3] 2R_18922837_INS [dm6]	A	AA	6.375e^-5	0.846	INTRON sano
3R	25198696	3R_25198696_SNP [dm3] 3R_29372974_SNP [dm6]	C	T	6.411e^-5	0.846	INTERGENIC
3L	1817369	3L_1817369_INS [dm3] 3L_1817369_INS [dm6]	A	AGCATATTACT...	6.421e^-5	0.846	INTRON GV1
3L	1817371	3L_1817371_INS [dm3] 3L_1817371_INS [dm6]	G	GA	6.421e^-5	0.846	INTRON GV1
2L	8630434	2L_8630434_SNP [dm3] 2L_8630434_SNP [dm6]	T	A	6.455e^-5	0.846	INTRON Sema-1a
3R	6454638	3R_6454638_SNP [dm3] 3R_10628916_SNP [dm6]	C	G	6.459e^-5	0.846	INTRON hth	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_inv
3R	27168486	3R_27168486_SNP [dm3] 3R_31342764_SNP [dm6]	G	T	6.490e^-5	0.846	INTRON CG34347
3R	26637144	3R_26637144_SNP [dm3] 3R_30811422_SNP [dm6]	T	A	6.623e^-5	0.846	INTRON cindr
2R	3015581	2R_3015581_SNP [dm3] 2R_7128076_SNP [dm6]	T	C	6.648e^-5	0.846	NON_SYNONYMOUS_CODING Cyp9b1 DOWNSTREAM esn
2L	20482401	2L_20482401_SNP [dm3] 2L_20482401_SNP [dm6]	A	G	6.680e^-5	0.846	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
X	10346171	X_10346171_SNP [dm3] X_10452138_SNP [dm6]	C	T	6.682e^-5	0.846	INTRON CG32683
2L	1820507	2L_1820507_SNP [dm3] 2L_1820507_SNP [dm6]	A	G	6.810e^-5	0.846	DOWNSTREAM CG31933 INTERGENIC
2L	5854938	2L_5854938_SNP [dm3] 2L_5854938_SNP [dm6]	A	C	6.866e^-5	0.846	INTRON TrissinR	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13260810	3L_13260810_SNP [dm3] 3L_13267710_SNP [dm6]	A	G	7.022e^-5	0.846	INTRON caps	TF binding site mE1_TFBS_HSA
3R	17352403	3R_17352403_SNP [dm3] 3R_21526681_SNP [dm6]	C	T	7.052e^-5	0.846	SYNONYMOUS_CODING CG7956 UTR_3_PRIME CG7956	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	19800280	X_19800280_INS [dm3] X_19906247_INS [dm6]	T	TAACT	7.177e^-5	0.846	UTR_3_PRIME Hers
X	15597575	X_15597575_SNP [dm3] X_15703542_SNP [dm6]	G	A	7.204e^-5	0.846	UPSTREAM CG8134 INTRON Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	4853031	2R_4853031_SNP [dm3] 2R_8965526_SNP [dm6]	C	T	7.448e^-5	0.846	UTR_5_PRIME CG8216
2L	2511261	2L_2511261_SNP [dm3] 2L_2511261_SNP [dm6]	A	T	7.461e^-5	0.846	INTERGENIC
X	3529167	X_3529167_SNP [dm3] X_3635134_SNP [dm6]	C	T	7.499e^-5	0.846	INTRON AstA-R1
2R	17760439	2R_17760439_SNP [dm3] 2R_21872934_SNP [dm6]	A	G	7.509e^-5	0.846	INTRON Fili	TF binding site mE1_TFBS_D
2L	10533640	2L_10533640_SNP [dm3] 2L_10533640_SNP [dm6]	T	G	7.585e^-5	0.846	UTR_3_PRIME CG18301 UPSTREAM CG18302
X	15594870	X_15594870_SNP [dm3] X_15700837_SNP [dm6]	C	G	7.649e^-5	0.846	DOWNSTREAM CG8128 & 1 other INTRON CG9240	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	27168523	3R_27168523_SNP [dm3] 3R_31342801_SNP [dm6]	A	G	7.659e^-5	0.846	INTRON CG34347
3L	335010	3L_335010_SNP [dm3] 3L_335010_SNP [dm6]	T	C	7.681e^-5	0.846	SYNONYMOUS_CODING mthl10 INTRON Ptpmeg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14867306	3L_14867306_INS [dm3] 3L_14874206_INS [dm6]	A	AA	7.715e^-5	0.846	INTRON CG17839
3R	6454302	3R_6454302_SNP [dm3] 3R_10628580_SNP [dm6]	G	A	7.806e^-5	0.846	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
X	15595199	X_15595199_SNP [dm3] X_15701166_SNP [dm6]	T	C	7.884e^-5	0.846	UTR_5_PRIME CG9240 DOWNSTREAM Pis	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17064659	3R_17064659_SNP [dm3] 3R_21238937_SNP [dm6]	C	T	7.920e^-5	0.846	INTERGENIC	regulatory region REDfly_CRMs
3R	16324118	3R_16324118_SNP [dm3] 3R_20498396_SNP [dm6]	T	C	7.923e^-5	0.846	INTERGENIC
3L	8505096	3L_8505096_SNP [dm3] 3L_8511996_SNP [dm6]	C	A	7.965e^-5	0.846	SYNONYMOUS_CODING CG6745 UPSTREAM CG6765	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8177594	2L_8177594_SNP [dm3] 2L_8177594_SNP [dm6]	C	T	8.071e^-5	0.846	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14376483	3R_14376483_SNP [dm3] 3R_18550761_SNP [dm6]	G	A	8.220e^-5	0.846	INTERGENIC
2L	20332205	2L_20332205_DEL [dm3] 2L_20332205_DEL [dm6]	CCAGG	C	8.280e^-5	0.846	INTRON spir
3R	25599768	3R_25599768_SNP [dm3] 3R_29774046_SNP [dm6]	A	G	8.371e^-5	0.846	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10486284	3R_10486284_SNP [dm3] 3R_14660562_SNP [dm6]	A	G	8.398e^-5	0.846	SYNONYMOUS_CODING Hexim DOWNSTREAM Rad17	TF binding site mE1_TFBS_HSA
3L	4935520	3L_4935520_SNP [dm3] 3L_4935520_SNP [dm6]	G	A	8.630e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20440366	3R_20440366_SNP [dm3] 3R_24614644_SNP [dm6]	G	T	8.701e^-5	0.846	INTRON mld
3R	10885525	3R_10885525_SNP [dm3] 3R_15059803_SNP [dm6]	G	T	8.755e^-5	0.846	INTRON dpr9
3R	23589227	3R_23589227_SNP [dm3] 3R_27763505_SNP [dm6]	C	G	8.779e^-5	0.846	INTERGENIC
3L	10283082	3L_10283082_SNP [dm3] 3L_10289982_SNP [dm6]	G	T	8.801e^-5	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8451470	2L_8451470_SNP [dm3] 2L_8451470_SNP [dm6]	G	C	8.818e^-5	0.846	START_GAINED fu12 UTR_5_PRIME fu12 UPSTREAM fu12 INTRON fu12
X	15595613	X_15595613_SNP [dm3] X_15701580_SNP [dm6]	A	T	8.870e^-5	0.846	UTR_3_PRIME Pis UPSTREAM CG9240	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	630500	3L_630500_SNP [dm3] 3L_630500_SNP [dm6]	T	C	8.878e^-5	0.846	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22786661	3R_22786661_SNP [dm3] 3R_26960939_SNP [dm6]	G	A	8.940e^-5	0.846	DOWNSTREAM Tsp97E INTERGENIC
2L	2868599	2L_2868599_SNP [dm3] 2L_2868599_SNP [dm6]	C	A	8.962e^-5	0.846	DOWNSTREAM CG31694 & 1 other INTERGENIC
3L	630534	3L_630534_SNP [dm3] 3L_630534_SNP [dm6]	A	G	9.020e^-5	0.846	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5728191	3L_5728191_SNP [dm3] 3L_5735091_SNP [dm6]	T	A	9.036e^-5	0.846	INTRON sif
2R	16936849	2R_16936849_SNP [dm3] 2R_21049344_SNP [dm6]	C	T	9.081e^-5	0.846	DOWNSTREAM shg INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3295841	3L_3295841_SNP [dm3] 3L_3295841_SNP [dm6]	C	A	9.138e^-5	0.846	INTRON CG12009	TF binding site mE1_TFBS_cad
2L	1822368	2L_1822368_SNP [dm3] 2L_1822368_SNP [dm6]	A	G	9.226e^-5	0.846	SYNONYMOUS_CODING CG31933
3R	16324107	3R_16324107_SNP [dm3] 3R_20498385_SNP [dm6]	C	T	9.287e^-5	0.846	INTERGENIC
3R	22855071	3R_22855071_SNP [dm3] 3R_27029349_SNP [dm6]	T	A	9.428e^-5	0.846	INTRON RYa-R
3L	11836180	3L_11836180_SNP [dm3] 3L_11843080_SNP [dm6]	G	C	9.503e^-5	0.846	INTERGENIC
2L	1635286	2L_1635286_SNP [dm3] 2L_1635286_SNP [dm6]	T	C	9.587e^-5	0.846	INTERGENIC
3R	4297207	3R_4297207_SNP [dm3] 3R_8471485_SNP [dm6]	T	A	9.612e^-5	0.846	INTRON CG45263
3R	17066637	3R_17066637_SNP [dm3] 3R_21240915_SNP [dm6]	T	C	9.689e^-5	0.846	INTERGENIC	regulatory region REDfly_CRMs
3R	27168481	3R_27168481_SNP [dm3] 3R_31342759_SNP [dm6]	T	A	9.759e^-5	0.846	INTRON CG34347
3R	25599786	3R_25599786_SNP [dm3] 3R_29774064_SNP [dm6]	C	G	9.770e^-5	0.846	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15592956	X_15592956_SNP [dm3] X_15698923_SNP [dm6]	G	C	9.790e^-5	0.846	INTRON CG8128
2R	13841581	2R_13841581_SNP [dm3] 2R_17954076_SNP [dm6]	T	C	9.797e^-5	0.846	UPSTREAM CR44418 INTERGENIC
2R	18999479	2R_18999479_SNP [dm3] 2R_23111956_SNP [dm6]	C	G	9.821e^-5	0.846	UPSTREAM CR44781 INTERGENIC
2R	4903164	2R_4903164_SNP [dm3] 2R_9015659_SNP [dm6]	T	G	9.833e^-5	0.846	NON_SYNONYMOUS_CODING CG13744	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	1539885	X_1539885_SNP [dm3] X_1645852_SNP [dm6]	C	A	9.882e^-5	0.846	DOWNSTREAM br INTRON Mur2B & 1 other	TF binding site BDTNP1_TFBS_dl
2R	6620059	2R_6620059_SNP [dm3] 2R_10732554_SNP [dm6]	C	T	9.891e^-5	0.846	UPSTREAM CG7220 INTRON CG7220
3R	8819686	3R_8819686_SNP [dm3] 3R_12993964_SNP [dm6]	G	C	9.928e^-5	0.846	SYNONYMOUS_CODING yellow-f2 UPSTREAM yellow-f
2L	5446460	2L_5446460_SNP [dm3] 2L_5446460_SNP [dm6]	A	C	9.946e^-5	0.846	INTERGENIC
2R	11484434	2R_11484434_SNP [dm3] 2R_15596929_SNP [dm6]	A	T	9.995e^-5	0.846	INTERGENIC
3L	2519792	3L_2519792_SNP [dm3] 3L_2519792_SNP [dm6]	T	C	1.002e^-4	0.846	INTRON Spn
X	15598496	X_15598496_SNP [dm3] X_15704463_SNP [dm6]	G	T	1.005e^-4	0.846	UPSTREAM Pis INTRON CG8134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5290610	3L_5290610_SNP [dm3] 3L_5297510_SNP [dm6]	A	G	1.014e^-4	0.846	INTERGENIC
X	17952269	X_17952269_SNP [dm3] X_18058236_SNP [dm6]	C	T	1.016e^-4	0.846	INTRON Sh
X	19496110	X_19496110_SNP [dm3] X_19602077_SNP [dm6]	A	T	1.018e^-4	0.846	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	17603402	2L_17603402_SNP [dm3] 2L_17603402_SNP [dm6]	T	C	1.019e^-4	0.846	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18894172	2R_18894172_INS [dm3] 2R_23006649_INS [dm6]	T	TCT	1.022e^-4	0.846	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	19271432	3R_19271432_SNP [dm3] 3R_23445710_SNP [dm6]	T	A	1.025e^-4	0.846	INTRON CG4374
X	11451834	X_11451834_SNP [dm3] X_11557801_SNP [dm6]	T	C	1.030e^-4	0.846	INTRON CG1572	TF binding site BDTNP1_TFBS_gt
3L	8503021	3L_8503021_SNP [dm3] 3L_8509921_SNP [dm6]	G	A	1.035e^-4	0.846	UPSTREAM CG6745 & 1 other INTERGENIC
X	15009385	X_15009385_SNP [dm3] X_15115352_SNP [dm6]	C	T	1.041e^-4	0.846	NON_SYNONYMOUS_CODING Cyp4s3
2L	3523215	2L_3523215_SNP [dm3] 2L_3523215_SNP [dm6]	G	A	1.047e^-4	0.846	SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
3R	10882379	3R_10882379_SNP [dm3] 3R_15056657_SNP [dm6]	G	A	1.050e^-4	0.846	UTR_3_PRIME dpr9
2R	3015489	2R_3015489_SNP [dm3] 2R_7127984_SNP [dm6]	G	A	1.054e^-4	0.846	UTR_3_PRIME Cyp9b1 DOWNSTREAM esn	transposable element FlyBase
2R	13653034	2R_13653034_SNP [dm3] 2R_17765529_SNP [dm6]	A	G	1.055e^-4	0.846	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20748515	X_20748515_SNP [dm3] X_20877488_SNP [dm6]	T	A	1.055e^-4	0.846	INTRON shakB
3R	19415407	3R_19415407_SNP [dm3] 3R_23589685_SNP [dm6]	T	C	1.058e^-4	0.846	NON_SYNONYMOUS_CODING CG10182 DOWNSTREAM CG33337
2L	3968355	2L_3968355_SNP [dm3] 2L_3968355_SNP [dm6]	C	A	1.061e^-4	0.846	INTRON fred	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	16568954	2R_16568954_SNP [dm3] 2R_20681449_SNP [dm6]	C	T	1.067e^-4	0.846	INTERGENIC
X	19800363	X_19800363_SNP [dm3] X_19906330_SNP [dm6]	A	T	1.070e^-4	0.846	UTR_3_PRIME Hers
2R	17347820	2R_17347820_SNP [dm3] 2R_21460315_SNP [dm6]	C	A	1.070e^-4	0.846	INTRON Sdc
3L	838109	3L_838109_SNP [dm3] 3L_838109_SNP [dm6]	A	T	1.071e^-4	0.846	UTR_5_PRIME CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	22855114	3R_22855114_SNP [dm3] 3R_27029392_SNP [dm6]	C	T	1.072e^-4	0.846	INTRON RYa-R
2R	16101867	2R_16101867_SNP [dm3] 2R_20214362_SNP [dm6]	G	A	1.078e^-4	0.846	INTERGENIC
2L	20884318	2L_20884318_SNP [dm3] 2L_20884318_SNP [dm6]	C	T	1.083e^-4	0.846	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23768127	3R_23768127_SNP [dm3] 3R_27942405_SNP [dm6]	G	A	1.087e^-4	0.846	DOWNSTREAM mfrn INTRON CG5514
2L	19368175	2L_19368175_SNP [dm3] 2L_19368175_SNP [dm6]	A	T	1.088e^-4	0.846	INTERGENIC
2R	17760448	2R_17760448_SNP [dm3] 2R_21872943_SNP [dm6]	T	A	1.090e^-4	0.846	INTRON Fili	TF binding site mE1_TFBS_D
3R	18548021	3R_18548021_SNP [dm3] 3R_22722299_SNP [dm6]	A	T	1.094e^-4	0.846	INTRON Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3950106	3L_3950106_SNP [dm3] 3L_3950106_SNP [dm6]	T	G	1.096e^-4	0.846	UPSTREAM CG14983 INTERGENIC
2R	16817896	2R_16817896_SNP [dm3] 2R_20930391_SNP [dm6]	T	C	1.096e^-4	0.846	INTRON Rx
2L	11666155	2L_11666155_SNP [dm3] 2L_11666155_SNP [dm6]	C	G	1.097e^-4	0.846	DOWNSTREAM CR44481 INTERGENIC
3L	1703948	3L_1703948_SNP [dm3] 3L_1703948_SNP [dm6]	G	T	1.099e^-4	0.846	INTRON CG7991	TF binding site mE1_TFBS_chinmo
X	8723226	X_8723226_SNP [dm3] X_8829193_SNP [dm6]	T	A	1.100e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17090408	3R_17090408_SNP [dm3] 3R_21264686_SNP [dm6]	G	T	1.104e^-4	0.846	SYNONYMOUS_CODING ETHR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18471586	3R_18471586_INS [dm3] 3R_22645864_INS [dm6]	G	TA	1.105e^-4	0.846	INTRON CG45058
3R	12251279	3R_12251279_SNP [dm3] 3R_16425557_SNP [dm6]	A	G	1.106e^-4	0.846	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3L	16418988	3L_16418988_INS [dm3] 3L_16425888_INS [dm6]	T	TATTGCT	1.123e^-4	0.846	INTRON CG33158 & 1 other
X	19774093	X_19774093_SNP [dm3] X_19880060_SNP [dm6]	C	A	1.126e^-4	0.846	INTRON Hers
X	6784221	X_6784221_SNP [dm3] X_6890188_SNP [dm6]	G	A	1.131e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	2006779	3L_2006779_SNP [dm3] 3L_2006779_SNP [dm6]	C	A	1.132e^-4	0.846	INTERGENIC
2R	6746459	2R_6746459_SNP [dm3] 2R_10858954_SNP [dm6]	C	A	1.134e^-4	0.846	UPSTREAM CR44302 INTRON CG30015
2R	6218568	2R_6218568_SNP [dm3] 2R_10331063_SNP [dm6]	C	T	1.136e^-4	0.846	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15754507	3L_15754507_SNP [dm3] 3L_15761407_SNP [dm6]	T	G	1.138e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_cad
3R	23431408	3R_23431408_SNP [dm3] 3R_27605686_SNP [dm6]	G	T	1.140e^-4	0.846	INTRON dsd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5629529	2L_5629529_SNP [dm3] 2L_5629529_SNP [dm6]	C	A	1.159e^-4	0.846	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	19881617	X_19881617_SNP [dm3] X_19987584_SNP [dm6]	A	T	1.161e^-4	0.846	INTERGENIC
3R	9645452	3R_9645452_SNP [dm3] 3R_13819730_SNP [dm6]	G	A	1.174e^-4	0.846	INTERGENIC
X	5076090	X_5076090_SNP [dm3] X_5182057_SNP [dm6]	G	A	1.176e^-4	0.846	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
2L	19368211	2L_19368211_SNP [dm3] 2L_19368211_SNP [dm6]	C	T	1.180e^-4	0.846	INTERGENIC
X	1464511	X_1464511_SNP [dm3] X_1570478_SNP [dm6]	G	C	1.183e^-4	0.846	INTRON Mur2B
X	19436752	X_19436752_INS [dm3] X_19542719_INS [dm6]	T	TCCTATAATAAAGT...	1.189e^-4	0.846	INTRON CG32532
X	3531353	X_3531353_SNP [dm3] X_3637320_SNP [dm6]	C	T	1.191e^-4	0.846	INTRON AstA-R1
2L	8477987	2L_8477987_SNP [dm3] 2L_8477987_SNP [dm6]	T	A	1.192e^-4	0.846	UTR_3_PRIME CheA29a UPSTREAM d INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	20440363	3R_20440363_SNP [dm3] 3R_24614641_SNP [dm6]	G	T	1.215e^-4	0.846	INTRON mld
3R	1748544	3R_1748544_SNP [dm3] 3R_5922822_SNP [dm6]	G	A	1.216e^-4	0.846	INTRON CG34113
2R	6216351	2R_6216351_SNP [dm3] 2R_10328846_SNP [dm6]	C	T	1.217e^-4	0.846	SYNONYMOUS_CODING CG42732 INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8630426	2L_8630426_SNP [dm3] 2L_8630426_SNP [dm6]	T	C	1.233e^-4	0.846	INTRON Sema-1a
3R	6451211	3R_6451211_SNP [dm3] 3R_10625489_SNP [dm6]	G	A	1.244e^-4	0.846	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	11644934	2L_11644934_SNP [dm3] 2L_11644934_SNP [dm6]	A	G	1.252e^-4	0.846	UTR_3_PRIME CG6614 DOWNSTREAM CG6614
3R	25198520	3R_25198520_SNP [dm3] 3R_29372798_SNP [dm6]	G	A	1.253e^-4	0.846	INTERGENIC
2L	1823975	2L_1823975_SNP [dm3] 2L_1823975_SNP [dm6]	G	A	1.259e^-4	0.846	UPSTREAM CG31933 DOWNSTREAM CG31664 INTERGENIC
3R	25599595	3R_25599595_SNP [dm3] 3R_29773873_SNP [dm6]	T	C	1.259e^-4	0.846	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14278660	2R_14278660_SNP [dm3] 2R_18391155_SNP [dm6]	C	A	1.261e^-4	0.846	UPSTREAM CG15068 DOWNSTREAM CG15065 INTERGENIC
3R	3111964	3R_3111964_SNP [dm3] 3R_7286242_SNP [dm6]	T	C	1.262e^-4	0.846	SYNONYMOUS_CODING RacGAP84C UPSTREAM CR44333 INTRON rn	TF binding site mE1_TFBS_chinmo
2R	16929659	2R_16929659_SNP [dm3] 2R_21042154_SNP [dm6]	C	T	1.264e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19799374	X_19799374_SNP [dm3] X_19905341_SNP [dm6]	C	T	1.265e^-4	0.846	UTR_3_PRIME Hers
2R	6184421	2R_6184421_SNP [dm3] 2R_10296916_SNP [dm6]	T	A	1.270e^-4	0.846	SYNONYMOUS_CODING CAP INTRON CAP
3L	12031038	3L_12031038_SNP [dm3] 3L_12037938_SNP [dm6]	C	G	1.273e^-4	0.846	INTRON rols
3R	25598024	3R_25598024_SNP [dm3] 3R_29772302_SNP [dm6]	A	T	1.273e^-4	0.846	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	15597400	X_15597400_SNP [dm3] X_15703367_SNP [dm6]	A	G	1.280e^-4	0.846	UPSTREAM CG8134 INTRON Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	15595950	X_15595950_DEL [dm3] X_15701917_DEL [dm6]	TT	T	1.299e^-4	0.846	UTR_3_PRIME Pis UPSTREAM CG9240	TF binding site mE1_TFBS_HSA
2R	16929355	2R_16929355_SNP [dm3] 2R_21041850_SNP [dm6]	A	G	1.302e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15456466	X_15456466_SNP [dm3] X_15562433_SNP [dm6]	C	T	1.308e^-4	0.846	INTERGENIC
3R	21753757	3R_21753757_SNP [dm3] 3R_25928035_SNP [dm6]	A	C	1.312e^-4	0.846	INTRON CCAP-R
3R	27168498	3R_27168498_SNP [dm3] 3R_31342776_SNP [dm6]	T	C	1.313e^-4	0.846	INTRON CG34347
3R	967173	3R_967173_SNP [dm3] 3R_5141451_SNP [dm6]	A	T	1.313e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9738013	2R_9738013_SNP [dm3] 2R_13850508_SNP [dm6]	A	G	1.315e^-4	0.846	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	5096217	2L_5096217_SNP [dm3] 2L_5096217_SNP [dm6]	T	A	1.316e^-4	0.846	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
X	16361990	X_16361990_SNP [dm3] X_16467957_SNP [dm6]	G	A	1.319e^-4	0.846	INTRON para	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17542096	3L_17542096_SNP [dm3] 3L_17548996_SNP [dm6]	T	C	1.320e^-4	0.846	SYNONYMOUS_CODING Jon74E UPSTREAM CG7542
2L	1544073	2L_1544073_SNP [dm3] 2L_1544073_SNP [dm6]	C	T	1.321e^-4	0.846	INTERGENIC
X	19774156	X_19774156_SNP [dm3] X_19880123_SNP [dm6]	G	T	1.327e^-4	0.846	INTRON Hers
X	15597998	X_15597998_SNP [dm3] X_15703965_SNP [dm6]	G	A	1.330e^-4	0.846	UPSTREAM CG8134 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	14655058	3L_14655058_SNP [dm3] 3L_14661958_SNP [dm6]	G	A	1.332e^-4	0.846	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8717051	2R_8717051_SNP [dm3] 2R_12829546_SNP [dm6]	T	G	1.334e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	1134964	3L_1134964_SNP [dm3] 3L_1134964_SNP [dm6]	A	C	1.334e^-4	0.846	INTERGENIC	regulatory region REDfly_CRMs
X	5258313	X_5258313_SNP [dm3] X_5364280_SNP [dm6]	G	A	1.341e^-4	0.846	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23873603	3R_23873603_SNP [dm3] 3R_28047881_SNP [dm6]	T	C	1.349e^-4	0.846	INTRON CG34362
3L	12836357	3L_12836357_SNP [dm3] 3L_12843257_SNP [dm6]	A	G	1.363e^-4	0.846	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19277850	3R_19277850_SNP [dm3] 3R_23452128_SNP [dm6]	C	A	1.364e^-4	0.846	INTRON CG4374	TF binding site BDTNP1_TFBS_dl
2R	16136141	2R_16136141_SNP [dm3] 2R_20248636_SNP [dm6]	A	G	1.368e^-4	0.846	SYNONYMOUS_CODING CG9864	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13646342	X_13646342_SNP [dm3] X_13752309_SNP [dm6]	G	T	1.370e^-4	0.846	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17320976	2R_17320976_SNP [dm3] 2R_21433471_SNP [dm6]	G	C	1.370e^-4	0.846	INTRON Sdc
3L	781367	3L_781367_SNP [dm3] 3L_781367_SNP [dm6]	G	T	1.378e^-4	0.846	INTERGENIC
2L	14292630	2L_14292630_SNP [dm3] 2L_14292630_SNP [dm6]	G	A	1.379e^-4	0.846	DOWNSTREAM CR43639 & 1 other INTRON wb	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	630563	3L_630563_SNP [dm3] 3L_630563_SNP [dm6]	G	T	1.381e^-4	0.846	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10101185	3L_10101185_SNP [dm3] 3L_10108085_SNP [dm6]	G	A	1.385e^-4	0.846	INTRON dpr6
3R	9645153	3R_9645153_SNP [dm3] 3R_13819431_SNP [dm6]	T	G	1.386e^-4	0.846	INTERGENIC
3L	5984173	3L_5984173_SNP [dm3] 3L_5991073_SNP [dm6]	A	G	1.389e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4348763	2L_4348763_SNP [dm3] 2L_4348763_SNP [dm6]	T	A	1.391e^-4	0.846	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	19719329	2R_19719329_SNP [dm3] 2R_23831806_SNP [dm6]	T	A	1.391e^-4	0.846	INTRON CG5549
3L	2007379	3L_2007379_SNP [dm3] 3L_2007379_SNP [dm6]	A	G	1.401e^-4	0.846	INTERGENIC
2R	8587713	2R_8587713_SNP [dm3] 2R_12700208_SNP [dm6]	A	C	1.404e^-4	0.846	UTR_5_PRIME wuc
2L	19412629	2L_19412629_SNP [dm3] 2L_19412629_SNP [dm6]	T	G	1.417e^-4	0.846	UPSTREAM Pax INTRON Pax
3L	3267412	3L_3267412_SNP [dm3] 3L_3267412_SNP [dm6]	C	T	1.418e^-4	0.846	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16940321	2R_16940321_SNP [dm3] 2R_21052816_SNP [dm6]	C	T	1.419e^-4	0.846	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	24376157	3R_24376157_SNP [dm3] 3R_28550435_SNP [dm6]	G	C	1.429e^-4	0.846	INTERGENIC
X	15594069	X_15594069_SNP [dm3] X_15700036_SNP [dm6]	C	A	1.436e^-4	0.846	DOWNSTREAM CG9240 & 1 other INTERGENIC
X	3529170	X_3529170_SNP [dm3] X_3635137_SNP [dm6]	G	C	1.438e^-4	0.846	INTRON AstA-R1
2R	6353309	2R_6353309_SNP [dm3] 2R_10465804_SNP [dm6]	A	C	1.443e^-4	0.846	DOWNSTREAM Caf1-105 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23911905	3R_23911905_SNP [dm3] 3R_28086183_SNP [dm6]	C	T	1.443e^-4	0.846	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16823367	2R_16823367_SNP [dm3] 2R_20935862_SNP [dm6]	C	G	1.454e^-4	0.846	INTRON Rx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17262325	X_17262325_SNP [dm3] X_17368292_SNP [dm6]	A	G	1.454e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15179468	3L_15179468_SNP [dm3] 3L_15186368_SNP [dm6]	T	C	1.456e^-4	0.846	INTERGENIC
3L	2006698	3L_2006698_SNP [dm3] 3L_2006698_SNP [dm6]	G	C	1.464e^-4	0.846	INTERGENIC
X	15594715	X_15594715_SNP [dm3] X_15700682_SNP [dm6]	G	A	1.470e^-4	0.846	SYNONYMOUS_CODING CG9240 DOWNSTREAM CG8128 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	9707870	3R_9707870_SNP [dm3] 3R_13882148_SNP [dm6]	T	C	1.473e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12283044	2L_12283044_SNP [dm3] 2L_12283044_SNP [dm6]	A	T	1.474e^-4	0.846	INTRON aret
3L	4521821	3L_4521821_SNP [dm3] 3L_4521821_SNP [dm6]	G	A	1.480e^-4	0.846	INTRON Tie
3R	12251251	3R_12251251_DEL [dm3] 3R_16425529_DEL [dm6]	TATGCACACCTCCGTATGT...	T	1.485e^-4	0.846	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
3R	22889481	3R_22889481_SNP [dm3] 3R_27063759_SNP [dm6]	T	G	1.488e^-4	0.846	UTR_5_PRIME Nep5 DOWNSTREAM CG34292
3L	14879014	3L_14879014_SNP [dm3] 3L_14885914_SNP [dm6]	A	T	1.494e^-4	0.846	INTRON CR44702
3L	9966310	3L_9966310_SNP [dm3] 3L_9973210_SNP [dm6]	C	G	1.499e^-4	0.846	NON_SYNONYMOUS_CODING CG42455 UTR_5_PRIME vnc	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3L	9862884	3L_9862884_SNP [dm3] 3L_9869784_SNP [dm6]	A	C	1.502e^-4	0.846	SYNONYMOUS_CODING CG8108	TF binding site mE1_TFBS_cad
3L	5384544	3L_5384544_SNP [dm3] 3L_5391444_SNP [dm6]	C	A	1.511e^-4	0.846	INTERGENIC
2R	16817840	2R_16817840_SNP [dm3] 2R_20930335_SNP [dm6]	A	T	1.511e^-4	0.846	INTRON Rx
3R	9645493	3R_9645493_SNP [dm3] 3R_13819771_SNP [dm6]	T	G	1.515e^-4	0.846	INTERGENIC
2L	19338361	2L_19338361_SNP [dm3] 2L_19338361_SNP [dm6]	T	A	1.518e^-4	0.846	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17116523	2R_17116523_SNP [dm3] 2R_21229018_SNP [dm6]	T	G	1.522e^-4	0.846	INTRON ASPP
X	17556599	X_17556599_SNP [dm3] X_17662566_SNP [dm6]	A	G	1.536e^-4	0.846	SYNONYMOUS_CODING beta-Spec	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	630568	3L_630568_SNP [dm3] 3L_630568_SNP [dm6]	C	A	1.550e^-4	0.846	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15594030	X_15594030_SNP [dm3] X_15699997_SNP [dm6]	T	A	1.551e^-4	0.846	UTR_3_PRIME CG8128 DOWNSTREAM CG9240
2L	14292637	2L_14292637_SNP [dm3] 2L_14292637_SNP [dm6]	G	A	1.552e^-4	0.846	DOWNSTREAM CR43639 & 1 other INTRON wb	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7500266	2L_7500266_SNP [dm3] 2L_7500266_SNP [dm6]	A	G	1.556e^-4	0.846	SYNONYMOUS_CODING RapGAP1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3531333	X_3531333_SNP [dm3] X_3637300_SNP [dm6]	C	A	1.557e^-4	0.846	INTRON AstA-R1
2R	6221865	2R_6221865_SNP [dm3] 2R_10334360_SNP [dm6]	G	T	1.559e^-4	0.846	INTRON CG42732
3L	10101236	3L_10101236_SNP [dm3] 3L_10108136_SNP [dm6]	A	T	1.559e^-4	0.846	INTRON dpr6
2R	9305419	2R_9305419_SNP [dm3] 2R_13417914_SNP [dm6]	A	G	1.560e^-4	0.846	DOWNSTREAM CG42321 INTRON CG42321
3L	4487581	3L_4487581_SNP [dm3] 3L_4487581_SNP [dm6]	T	C	1.561e^-4	0.846	SPLICE_SITE_REGION CG13722 SYNONYMOUS_CODING CG13722
3R	15155827	3R_15155827_SNP [dm3] 3R_19330105_SNP [dm6]	T	C	1.565e^-4	0.846	INTRON CR43258 EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10875060	2R_10875060_SNP [dm3] 2R_14987555_SNP [dm6]	A	G	1.566e^-4	0.846	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10737422	3R_10737422_SNP [dm3] 3R_14911700_SNP [dm6]	T	C	1.567e^-4	0.846	INTERGENIC
3R	9646380	3R_9646380_SNP [dm3] 3R_13820658_SNP [dm6]	T	G	1.568e^-4	0.846	INTERGENIC
2L	8421378	2L_8421378_SNP [dm3] 2L_8421378_SNP [dm6]	C	G	1.569e^-4	0.846	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17949918	X_17949918_SNP [dm3] X_18055885_SNP [dm6]	A	T	1.586e^-4	0.853	INTRON Sh
X	10345724	X_10345724_SNP [dm3] X_10451691_SNP [dm6]	C	A	1.594e^-4	0.854	INTRON CG32683
X	15597094	X_15597094_SNP [dm3] X_15703061_SNP [dm6]	A	G	1.607e^-4	0.856	NON_SYNONYMOUS_CODING Pis INTRON Pis	TF binding site BDTNP1_TFBS_dl
X	15009089	X_15009089_SNP [dm3] X_15115056_SNP [dm6]	A	G	1.610e^-4	0.856	SYNONYMOUS_CODING Cyp4s3
X	15593694	X_15593694_SNP [dm3] X_15699661_SNP [dm6]	G	A	1.614e^-4	0.856	SYNONYMOUS_CODING CG8128 DOWNSTREAM CG9240	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10882679	3R_10882679_SNP [dm3] 3R_15056957_SNP [dm6]	G	A	1.621e^-4	0.856	UTR_3_PRIME dpr9
X	15594532	X_15594532_SNP [dm3] X_15700499_SNP [dm6]	C	G	1.623e^-4	0.856	SYNONYMOUS_CODING CG9240 DOWNSTREAM CG8128 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26060102	3R_26060102_SNP [dm3] 3R_30234380_SNP [dm6]	G	T	1.630e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18266556	X_18266556_SNP [dm3] X_18372523_SNP [dm6]	G	A	1.633e^-4	0.856	INTRON CrebB	TF binding site BDTNP1_TFBS_dl
2L	7141794	2L_7141794_SNP [dm3] 2L_7141794_SNP [dm6]	A	T	1.635e^-4	0.856	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3523492	2L_3523492_SNP [dm3] 2L_3523492_SNP [dm6]	A	G	1.641e^-4	0.856	NON_SYNONYMOUS_CODING Sr-CIV DOWNSTREAM CG8851
X	3526793	X_3526793_SNP [dm3] X_3632760_SNP [dm6]	T	A	1.646e^-4	0.856	INTRON AstA-R1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15556033	2R_15556033_SNP [dm3] 2R_19668528_SNP [dm6]	A	T	1.651e^-4	0.856	INTRON hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D
X	19496140	X_19496140_SNP [dm3] X_19602107_SNP [dm6]	T	A	1.668e^-4	0.856	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18851687	2R_18851687_SNP [dm3] 2R_22964164_SNP [dm6]	T	G	1.670e^-4	0.856	INTERGENIC
2R	12173487	2R_12173487_SNP [dm3] 2R_16285982_SNP [dm6]	T	C	1.672e^-4	0.856	SYNONYMOUS_CODING CG9068 EXON CR43728
3L	10283141	3L_10283141_SNP [dm3] 3L_10290041_SNP [dm6]	T	A	1.682e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15595998	X_15595998_SNP [dm3] X_15701965_SNP [dm6]	A	T	1.687e^-4	0.856	UTR_3_PRIME Pis UPSTREAM CG9240
2L	13879131	2L_13879131_SNP [dm3] 2L_13879131_SNP [dm6]	C	A	1.690e^-4	0.856	UTR_5_PRIME CenG1A INTRON CenG1A	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	15594333	X_15594333_SNP [dm3] X_15700300_SNP [dm6]	T	A	1.694e^-4	0.856	UTR_3_PRIME CG9240 DOWNSTREAM CG8128
3L	13490382	3L_13490382_SNP [dm3] 3L_13497282_SNP [dm6]	T	C	1.703e^-4	0.856	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10562819	3L_10562819_SNP [dm3] 3L_10569719_SNP [dm6]	A	C	1.711e^-4	0.856	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	17066967	3R_17066967_SNP [dm3] 3R_21241245_SNP [dm6]	A	G	1.720e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs
3R	25598019	3R_25598019_SNP [dm3] 3R_29772297_SNP [dm6]	G	A	1.727e^-4	0.856	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	8799512	3R_8799512_SNP [dm3] 3R_12973790_SNP [dm6]	C	T	1.735e^-4	0.856	UTR_5_PRIME CG7381 INTRON CG7381
3L	12836174	3L_12836174_SNP [dm3] 3L_12843074_SNP [dm6]	G	T	1.737e^-4	0.856	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15163361	2L_15163361_SNP [dm3] 2L_15163361_SNP [dm6]	C	T	1.744e^-4	0.856	UTR_3_PRIME CG4168
3L	14662419	3L_14662419_SNP [dm3] 3L_14669319_SNP [dm6]	C	T	1.745e^-4	0.856	SYNONYMOUS_CODING dlp
2R	17790802	2R_17790802_SNP [dm3] 2R_21903297_SNP [dm6]	A	T	1.747e^-4	0.856	INTRON Fili	TF binding site mE1_TFBS_cad
X	15009071	X_15009071_SNP [dm3] X_15115038_SNP [dm6]	A	G	1.752e^-4	0.856	SYNONYMOUS_CODING Cyp4s3
3R	14650451	3R_14650451_SNP [dm3] 3R_18824729_SNP [dm6]	G	T	1.759e^-4	0.856	INTRON CG18208
3R	23869287	3R_23869287_SNP [dm3] 3R_28043565_SNP [dm6]	A	T	1.764e^-4	0.856	INTRON CG34362
2L	9427256	2L_9427256_SNP [dm3] 2L_9427256_SNP [dm6]	C	T	1.769e^-4	0.856	SPLICE_SITE_REGION Fbp2 SYNONYMOUS_CODING Fbp2 UPSTREAM CG42847 DOWNSTREAM Mco1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15954125	2R_15954125_SNP [dm3] 2R_20066620_SNP [dm6]	C	T	1.773e^-4	0.856	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	2985922	3L_2985922_SNP [dm3] 3L_2985922_SNP [dm6]	G	C	1.777e^-4	0.856	INTERGENIC
3R	26676395	3R_26676395_DEL [dm3] 3R_30850673_DEL [dm6]	TT	G	1.789e^-4	0.856	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8801996	3R_8801996_SNP [dm3] 3R_12976274_SNP [dm6]	G	A	1.793e^-4	0.856	INTRON CG7381
2L	15512277	2L_15512277_SNP [dm3] 2L_15512277_SNP [dm6]	T	C	1.794e^-4	0.856	INTERGENIC
3L	8151897	3L_8151897_SNP [dm3] 3L_8158797_SNP [dm6]	G	A	1.795e^-4	0.856	UTR_5_PRIME CG42445 DOWNSTREAM CG43886
X	15594850	X_15594850_SNP [dm3] X_15700817_SNP [dm6]	G	A	1.797e^-4	0.856	DOWNSTREAM CG8128 & 1 other INTRON CG9240	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	1562936	2L_1562936_SNP [dm3] 2L_1562936_SNP [dm6]	A	T	1.800e^-4	0.856	INTRON haf	TF binding site mE1_TFBS_inv
3R	17055256	3R_17055256_SNP [dm3] 3R_21229534_SNP [dm6]	G	C	1.800e^-4	0.856	DOWNSTREAM e & 1 other INTERGENIC
3R	17055260	3R_17055260_SNP [dm3] 3R_21229538_SNP [dm6]	A	G	1.800e^-4	0.856	DOWNSTREAM e & 1 other INTERGENIC
2L	4986531	2L_4986531_SNP [dm3] 2L_4986531_SNP [dm6]	G	C	1.800e^-4	0.856	SYNONYMOUS_CODING CG34126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9427304	2L_9427304_SNP [dm3] 2L_9427304_SNP [dm6]	A	G	1.801e^-4	0.856	UPSTREAM CG42847 DOWNSTREAM Mco1 INTRON Fbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15596930	X_15596930_SNP [dm3] X_15702897_SNP [dm6]	T	C	1.815e^-4	0.856	UTR_3_PRIME Pis INTRON Pis	TF binding site BDTNP1_TFBS_dl
3L	11314329	3L_11314329_SNP [dm3] 3L_11321229_SNP [dm6]	G	A	1.822e^-4	0.856	NON_SYNONYMOUS_CODING CG6168
X	6270900	X_6270900_SNP [dm3] X_6376867_SNP [dm6]	A	G	1.830e^-4	0.856	INTERGENIC
3L	13490810	3L_13490810_SNP [dm3] 3L_13497710_SNP [dm6]	T	A	1.834e^-4	0.856	INTRON Tgi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7840981	3L_7840981_SNP [dm3] 3L_7847881_SNP [dm6]	T	A	1.835e^-4	0.856	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5258167	X_5258167_SNP [dm3] X_5364134_SNP [dm6]	A	T	1.841e^-4	0.856	INTRON SK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	19407740	2L_19407740_SNP [dm3] 2L_19407740_SNP [dm6]	G	A	1.841e^-4	0.856	INTRON Pax
3R	23959546	3R_23959546_SNP [dm3] 3R_28133824_SNP [dm6]	C	T	1.843e^-4	0.856	INTERGENIC
2L	996753	2L_996753_SNP [dm3] 2L_996753_SNP [dm6]	G	C	1.844e^-4	0.856	INTERGENIC
X	15592991	X_15592991_SNP [dm3] X_15698958_SNP [dm6]	C	T	1.847e^-4	0.856	INTRON CG8128
2L	7138091	2L_7138091_SNP [dm3] 2L_7138091_SNP [dm6]	C	A	1.855e^-4	0.856	INTRON Pvf3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13569319	3R_13569319_SNP [dm3] 3R_17743597_SNP [dm6]	C	T	1.866e^-4	0.856	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19799155	X_19799155_SNP [dm3] X_19905122_SNP [dm6]	A	C	1.866e^-4	0.856	UTR_3_PRIME Hers
3L	13023176	3L_13023176_SNP [dm3] 3L_13030076_SNP [dm6]	C	T	1.871e^-4	0.856	INTRON CG17672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3R	9676353	3R_9676353_SNP [dm3] 3R_13850631_SNP [dm6]	G	C	1.883e^-4	0.856	INTERGENIC
3R	6445576	3R_6445576_DEL [dm3] 3R_10619854_DEL [dm6]	GG	G	1.886e^-4	0.856	INTRON hth	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	4220898	2L_4220898_SNP [dm3] 2L_4220898_SNP [dm6]	T	C	1.892e^-4	0.856	INTRON ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	21011789	3R_21011789_INS [dm3] 3R_25186067_INS [dm6]	A	AGG	1.892e^-4	0.856	INTRON lobo & 1 other
X	15594559	X_15594559_SNP [dm3] X_15700526_SNP [dm6]	A	G	1.898e^-4	0.856	SYNONYMOUS_CODING CG9240 DOWNSTREAM CG8128 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3217056	2R_3217056_SNP [dm3] 2R_7329551_SNP [dm6]	T	C	1.902e^-4	0.856	SYNONYMOUS_CODING Dscam1 INTRON CR45129
2L	6009545	2L_6009545_SNP [dm3] 2L_6009545_SNP [dm6]	T	C	1.907e^-4	0.856	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2R	19353243	2R_19353243_INS [dm3] 2R_23465720_INS [dm6]	T	TGTGTGTGTGTGTGT...	1.909e^-4	0.856	INTRON CG43795
3R	6324501	3R_6324501_SNP [dm3] 3R_10498779_SNP [dm6]	A	T	1.911e^-4	0.856	INTERGENIC
3R	6460178	3R_6460178_SNP [dm3] 3R_10634456_SNP [dm6]	T	A	1.912e^-4	0.856	INTRON hth	TF binding site mE1_TFBS_chinmo
2R	16017948	2R_16017948_SNP [dm3] 2R_20130443_SNP [dm6]	G	T	1.915e^-4	0.856	INTERGENIC
3R	13876493	3R_13876493_SNP [dm3] 3R_18050771_SNP [dm6]	C	G	1.919e^-4	0.856	INTRON htl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	781396	3L_781396_SNP [dm3] 3L_781396_SNP [dm6]	T	C	1.921e^-4	0.856	INTERGENIC
3R	21062835	3R_21062835_DEL [dm3] 3R_25237113_DEL [dm6]	TTA	T	1.922e^-4	0.856	UPSTREAM CG11852 INTERGENIC
3R	6440922	3R_6440922_SNP [dm3] 3R_10615200_SNP [dm6]	G	A	1.930e^-4	0.857	UPSTREAM hth INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26573969	3R_26573969_SNP [dm3] 3R_30748247_SNP [dm6]	T	A	1.935e^-4	0.857	INTERGENIC
X	3531137	X_3531137_SNP [dm3] X_3637104_SNP [dm6]	A	G	1.937e^-4	0.857	INTRON AstA-R1
X	3529719	X_3529719_SNP [dm3] X_3635686_SNP [dm6]	C	T	1.953e^-4	0.86	INTRON AstA-R1
3L	1275927	3L_1275927_SNP [dm3] 3L_1275927_SNP [dm6]	T	G	1.955e^-4	0.86	UPSTREAM CG32333 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	9599883	3R_9599883_SNP [dm3] 3R_13774161_SNP [dm6]	T	A	1.959e^-4	0.86	INTRON CG9297
X	20706312	X_20706312_SNP [dm3] X_20835285_SNP [dm6]	A	T	1.966e^-4	0.861	INTRON shakB
3R	6402460	3R_6402460_SNP [dm3] 3R_10576738_SNP [dm6]	A	G	1.973e^-4	0.861	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2007444	3L_2007444_DEL [dm3] 3L_2007444_DEL [dm6]	AAAT	G	1.974e^-4	0.861	INTERGENIC
3R	6324589	3R_6324589_SNP [dm3] 3R_10498867_SNP [dm6]	G	T	1.989e^-4	0.861	INTERGENIC
2L	3554762	2L_3554762_SNP [dm3] 2L_3554762_SNP [dm6]	C	T	1.998e^-4	0.861	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	3811557	2L_3811557_SNP [dm3] 2L_3811557_SNP [dm6]	A	G	2.002e^-4	0.861	DOWNSTREAM Reph INTRON CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	8802960	3R_8802960_SNP [dm3] 3R_12977238_SNP [dm6]	C	T	2.009e^-4	0.861	UTR_5_PRIME CG7381 UPSTREAM CG7091
3L	16456744	3L_16456744_SNP [dm3] 3L_16463644_SNP [dm6]	G	A	2.017e^-4	0.861	INTRON CG33158	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23911909	3R_23911909_SNP [dm3] 3R_28086187_SNP [dm6]	G	A	2.020e^-4	0.861	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22809487	3R_22809487_SNP [dm3] 3R_26983765_SNP [dm6]	T	G	2.030e^-4	0.861	INTRON CG14253
X	6527488	X_6527488_SNP [dm3] X_6633455_SNP [dm6]	C	G	2.041e^-4	0.861	UPSTREAM CG14443 INTRON pigs	TF binding site mE1_TFBS_HSA
2R	16940411	2R_16940411_SNP [dm3] 2R_21052906_SNP [dm6]	A	G	2.046e^-4	0.861	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17221636	X_17221636_SNP [dm3] X_17327603_SNP [dm6]	G	A	2.046e^-4	0.861	INTERGENIC
2R	13841432	2R_13841432_SNP [dm3] 2R_17953927_SNP [dm6]	G	C	2.051e^-4	0.861	UPSTREAM CR44418 INTERGENIC
X	4141956	X_4141956_SNP [dm3] X_4247923_SNP [dm6]	C	A	2.052e^-4	0.861	UPSTREAM CG43135 DOWNSTREAM CG43134 INTERGENIC
3R	10225129	3R_10225129_SNP [dm3] 3R_14399407_SNP [dm6]	A	G	2.062e^-4	0.861	INTRON cv-c
2R	4460918	2R_4460918_SNP [dm3] 2R_8573413_SNP [dm6]	G	C	2.063e^-4	0.861	UTR_3_PRIME CG42326	TF binding site mE1_TFBS_cad
3R	11005303	3R_11005303_SNP [dm3] 3R_15179581_SNP [dm6]	G	T	2.063e^-4	0.861	UPSTREAM Mf INTRON Gyc88E & 1 other
2L	6009064	2L_6009064_SNP [dm3] 2L_6009064_SNP [dm6]	C	A	2.067e^-4	0.861	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
2L	9427314	2L_9427314_DEL [dm3] 2L_9427314_DEL [dm6]	CA	T	2.070e^-4	0.861	UPSTREAM CG42847 DOWNSTREAM Mco1 INTRON Fbp2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17895863	3R_17895863_SNP [dm3] 3R_22070141_SNP [dm6]	C	T	2.073e^-4	0.861	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	9895693	X_9895693_SNP [dm3] X_10001660_SNP [dm6]	T	C	2.074e^-4	0.861	UTR_3_PRIME CG32694 INTRON CG32694
2R	16940276	2R_16940276_SNP [dm3] 2R_21052771_SNP [dm6]	A	C	2.078e^-4	0.861	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6746469	2R_6746469_SNP [dm3] 2R_10858964_SNP [dm6]	C	A	2.080e^-4	0.861	UPSTREAM CR44302 INTRON CG30015
X	14824069	X_14824069_SNP [dm3] X_14930036_SNP [dm6]	G	C	2.083e^-4	0.861	UTR_5_PRIME Flo2 UPSTREAM Flo2 INTRON Flo2
3R	9914219	3R_9914219_SNP [dm3] 3R_14088497_SNP [dm6]	C	A	2.086e^-4	0.861	DOWNSTREAM foxo INTERGENIC	TF binding site mE1_TFBS_bab1
3R	24504202	3R_24504202_SNP [dm3] 3R_28678480_SNP [dm6]	A	G	2.092e^-4	0.861	INTRON CG9990
3L	1496073	3L_1496073_SNP [dm3] 3L_1496073_SNP [dm6]	G	A	2.092e^-4	0.861	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	16317067	2R_16317067_SNP [dm3] 2R_20429562_SNP [dm6]	C	T	2.094e^-4	0.861	UTR_5_PRIME CG12484
X	15598072	X_15598072_SNP [dm3] X_15704039_SNP [dm6]	C	T	2.099e^-4	0.862	UPSTREAM CG8134 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	8830883	3L_8830883_SNP [dm3] 3L_8837783_SNP [dm6]	A	G	2.113e^-4	0.863	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	7859332	3R_7859332_SNP [dm3] 3R_12033610_SNP [dm6]	C	T	2.113e^-4	0.863	SYNONYMOUS_CODING ssp5	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	9647880	3R_9647880_SNP [dm3] 3R_13822158_SNP [dm6]	A	T	2.122e^-4	0.863	INTERGENIC
X	3121892	X_3121892_SNP [dm3] X_3227859_SNP [dm6]	T	C	2.123e^-4	0.863	INTRON dnc
X	14212578	X_14212578_SNP [dm3] X_14318545_SNP [dm6]	T	C	2.131e^-4	0.863	INTERGENIC
3R	18680217	3R_18680217_DEL [dm3] 3R_22854495_DEL [dm6]	GTGCTGG	G	2.132e^-4	0.863	INTERGENIC
2L	14182077	2L_14182077_SNP [dm3] 2L_14182077_SNP [dm6]	C	T	2.136e^-4	0.863	INTERGENIC
2L	1006624	2L_1006624_SNP [dm3] 2L_1006624_SNP [dm6]	G	T	2.140e^-4	0.863	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3L	10541784	3L_10541784_SNP [dm3] 3L_10548684_SNP [dm6]	G	A	2.148e^-4	0.864	INTRON A2bp1
X	16671503	X_16671503_SNP [dm3] X_16777470_SNP [dm6]	C	T	2.160e^-4	0.866	INTRON if	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	10345167	X_10345167_SNP [dm3] X_10451134_SNP [dm6]	T	C	2.165e^-4	0.866	INTRON CG32683
2L	19286479	2L_19286479_SNP [dm3] 2L_19286479_SNP [dm6]	A	G	2.167e^-4	0.866	INTERGENIC
3R	10851249	3R_10851249_SNP [dm3] 3R_15025527_SNP [dm6]	G	A	2.185e^-4	0.868	INTERGENIC
2L	12761464	2L_12761464_SNP [dm3] 2L_12761464_SNP [dm6]	G	T	2.191e^-4	0.868	NON_SYNONYMOUS_CODING CG15483
2R	6155149	2R_6155149_SNP [dm3] 2R_10267644_SNP [dm6]	A	G	2.201e^-4	0.868	INTRON CG12910
2R	11484429	2R_11484429_SNP [dm3] 2R_15596924_SNP [dm6]	G	A	2.217e^-4	0.868	INTERGENIC
2L	3857303	2L_3857303_SNP [dm3] 2L_3857303_SNP [dm6]	G	A	2.217e^-4	0.868	UPSTREAM CR45450 INTERGENIC	TF binding site mE1_TFBS_sens
3L	12885004	3L_12885004_SNP [dm3] 3L_12891904_SNP [dm6]	A	G	2.219e^-4	0.868	SYNONYMOUS_CODING CG43894 UPSTREAM CG14118 DOWNSTREAM CG43894
3L	19698877	3L_19698877_SNP [dm3] 3L_19705777_SNP [dm6]	T	A	2.224e^-4	0.868	INTRON serp
2L	8480191	2L_8480191_SNP [dm3] 2L_8480191_SNP [dm6]	C	A	2.226e^-4	0.868	INTRON d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	14662356	3L_14662356_SNP [dm3] 3L_14669256_SNP [dm6]	C	T	2.237e^-4	0.868	INTRON dlp
2R	14086525	2R_14086525_SNP [dm3] 2R_18199020_SNP [dm6]	A	T	2.240e^-4	0.868	INTERGENIC
2R	14784037	2R_14784037_SNP [dm3] 2R_18896532_SNP [dm6]	C	G	2.241e^-4	0.868	INTRON sano
3R	15181121	3R_15181121_SNP [dm3] 3R_19355399_SNP [dm6]	G	A	2.244e^-4	0.868	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	8756013	2L_8756013_SNP [dm3] 2L_8756013_SNP [dm6]	C	A	2.245e^-4	0.868	INTERGENIC
3L	12238465	3L_12238465_SNP [dm3] 3L_12245365_SNP [dm6]	T	C	2.246e^-4	0.868	DOWNSTREAM CR43991 INTRON app
2L	4348889	2L_4348889_SNP [dm3] 2L_4348889_SNP [dm6]	A	G	2.247e^-4	0.868	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4599980	3L_4599980_SNP [dm3] 3L_4599980_SNP [dm6]	G	A	2.258e^-4	0.868	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5396356	X_5396356_SNP [dm3] X_5502323_SNP [dm6]	T	C	2.260e^-4	0.868	SYNONYMOUS_CODING CG4151	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	11836103	3L_11836103_SNP [dm3] 3L_11843003_SNP [dm6]	A	T	2.263e^-4	0.868	INTERGENIC
2R	12980044	2R_12980044_SNP [dm3] 2R_17092539_SNP [dm6]	A	C	2.284e^-4	0.868	UPSTREAM Sply DOWNSTREAM GstS1 INTRON CG6984	TF binding site mE1_TFBS_Ubx
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	2.292e^-4	0.868	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13836530	2R_13836530_SNP [dm3] 2R_17949025_SNP [dm6]	G	A	2.295e^-4	0.868	INTERGENIC
3L	16443907	3L_16443907_SNP [dm3] 3L_16450807_SNP [dm6]	C	A	2.297e^-4	0.868	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19278785	3R_19278785_SNP [dm3] 3R_23453063_SNP [dm6]	C	T	2.301e^-4	0.868	INTRON CG4374
X	19435668	X_19435668_SNP [dm3] X_19541635_SNP [dm6]	G	A	2.303e^-4	0.868	INTRON CG32532
3R	10885549	3R_10885549_SNP [dm3] 3R_15059827_SNP [dm6]	G	A	2.312e^-4	0.868	INTRON dpr9
3L	3277677	3L_3277677_SNP [dm3] 3L_3277677_SNP [dm6]	C	T	2.318e^-4	0.868	INTERGENIC
3R	19117595	3R_19117595_SNP [dm3] 3R_23291873_SNP [dm6]	A	G	2.318e^-4	0.868	SYNONYMOUS_CODING pnt	TF binding site BDTNP1_TFBS_dl
3R	22857117	3R_22857117_SNP [dm3] 3R_27031395_SNP [dm6]	A	T	2.321e^-4	0.868	INTRON RYa-R
X	9199444	X_9199444_SNP [dm3] X_9305411_SNP [dm6]	C	A	2.324e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	10148492	X_10148492_SNP [dm3] X_10254459_SNP [dm6]	T	A	2.325e^-4	0.868	INTRON Hk
2R	7754176	2R_7754176_SNP [dm3] 2R_11866671_SNP [dm6]	G	A	2.330e^-4	0.868	UPSTREAM CR42532 & 1 other INTERGENIC
2L	19337944	2L_19337944_SNP [dm3] 2L_19337944_SNP [dm6]	G	A	2.332e^-4	0.868	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16145613	3R_16145613_SNP [dm3] 3R_20319891_SNP [dm6]	A	C	2.342e^-4	0.868	SYNONYMOUS_CODING CG42668
3R	20313090	3R_20313090_SNP [dm3] 3R_24487368_SNP [dm6]	A	G	2.354e^-4	0.868	INTRON nAChRalpha2
3L	11315748	3L_11315748_SNP [dm3] 3L_11322648_SNP [dm6]	A	G	2.365e^-4	0.868	UPSTREAM CG6168 & 1 other DOWNSTREAM CR44721 INTERGENIC
3L	17588621	3L_17588621_SNP [dm3] 3L_17595521_SNP [dm6]	G	A	2.369e^-4	0.868	INTRON Eip74EF
X	2886878	X_2886878_SNP [dm3] X_2992845_SNP [dm6]	A	C	2.370e^-4	0.868	INTRON kirre
X	3531805	X_3531805_SNP [dm3] X_3637772_SNP [dm6]	A	G	2.372e^-4	0.868	INTRON AstA-R1
3R	25038198	3R_25038198_SNP [dm3] 3R_29212476_SNP [dm6]	G	T	2.373e^-4	0.868	INTERGENIC
2L	4337428	2L_4337428_SNP [dm3] 2L_4337428_SNP [dm6]	A	G	2.375e^-4	0.868	INTRON Atet	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13123257	3L_13123257_SNP [dm3] 3L_13130157_SNP [dm6]	G	A	2.377e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14655149	3L_14655149_SNP [dm3] 3L_14662049_SNP [dm6]	T	C	2.380e^-4	0.868	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17759801	2R_17759801_SNP [dm3] 2R_21872296_SNP [dm6]	A	T	2.381e^-4	0.868	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10509194	2L_10509194_SNP [dm3] 2L_10509194_SNP [dm6]	C	T	2.400e^-4	0.868	SYNONYMOUS_CODING CG7384	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16494487	X_16494487_SNP [dm3] X_16600454_SNP [dm6]	G	T	2.417e^-4	0.868	SYNONYMOUS_CODING Nup153	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	24497553	3R_24497553_SNP [dm3] 3R_28671831_SNP [dm6]	C	T	2.418e^-4	0.868	SYNONYMOUS_CODING CG9989	TF binding site mE1_TFBS_bab1
2R	16593225	2R_16593225_SNP [dm3] 2R_20705720_SNP [dm6]	T	A	2.421e^-4	0.868	INTRON dpr
2R	8908341	2R_8908341_SNP [dm3] 2R_13020836_SNP [dm6]	T	C	2.429e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_cad
3R	13810961	3R_13810961_SNP [dm3] 3R_17985239_SNP [dm6]	G	A	2.434e^-4	0.868	INTRON cpo
2R	10028466	2R_10028466_SNP [dm3] 2R_14140961_SNP [dm6]	C	T	2.437e^-4	0.868	UPSTREAM Prosap INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_ttk mE1_TFBS_Ubx
3L	3295925	3L_3295925_SNP [dm3] 3L_3295925_SNP [dm6]	A	G	2.442e^-4	0.868	INTRON CG12009	TF binding site mE1_TFBS_cad
3L	1235074	3L_1235074_SNP [dm3] 3L_1235074_SNP [dm6]	G	A	2.447e^-4	0.868	SYNONYMOUS_CODING CG33966 UPSTREAM CR45747 & 1 other
2R	18811028	2R_18811028_SNP [dm3] 2R_22923505_SNP [dm6]	G	A	2.452e^-4	0.868	SYNONYMOUS_CODING Nup214	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1697199	3L_1697199_SNP [dm3] 3L_1697199_SNP [dm6]	C	T	2.453e^-4	0.868	DOWNSTREAM CG12011 INTRON CG7991
3L	19339440	3L_19339440_SNP [dm3] 3L_19346340_SNP [dm6]	C	A	2.457e^-4	0.868	INTRON CG32206
3R	20932398	3R_20932398_SNP [dm3] 3R_25106676_SNP [dm6]	A	G	2.476e^-4	0.868	SYNONYMOUS_CODING CG34027
3L	11667166	3L_11667166_SNP [dm3] 3L_11674066_SNP [dm6]	C	T	2.488e^-4	0.868	INTRON CG32085
3R	17476859	3R_17476859_SNP [dm3] 3R_21651137_SNP [dm6]	G	A	2.493e^-4	0.868	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	21753780	3R_21753780_SNP [dm3] 3R_25928058_SNP [dm6]	G	A	2.509e^-4	0.868	INTRON CCAP-R
X	17258360	X_17258360_SNP [dm3] X_17364327_SNP [dm6]	T	G	2.516e^-4	0.868	INTERGENIC
3R	8234973	3R_8234973_SNP [dm3] 3R_12409251_SNP [dm6]	T	A	2.516e^-4	0.868	SPLICE_SITE_REGION CG5196 UTR_5_PRIME CG5196 INTRON CG5196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18570567	2R_18570567_SNP [dm3] 2R_22683062_SNP [dm6]	G	A	2.523e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_sens
2L	6024046	2L_6024046_SNP [dm3] 2L_6024046_SNP [dm6]	T	G	2.526e^-4	0.868	NON_SYNONYMOUS_CODING CG9107	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7198071	2L_7198071_DEL [dm3] 2L_7198071_DEL [dm6]	AAG	A	2.538e^-4	0.868	INTRON CG4502
3R	24153907	3R_24153907_SNP [dm3] 3R_28328185_SNP [dm6]	C	G	2.557e^-4	0.868	UTR_5_PRIME larp INTRON larp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	20748353	X_20748353_SNP [dm3] X_20877326_SNP [dm6]	C	G	2.558e^-4	0.868	INTRON shakB
2L	5629522	2L_5629522_SNP [dm3] 2L_5629522_SNP [dm6]	A	T	2.560e^-4	0.868	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	9506515	X_9506515_SNP [dm3] X_9612482_SNP [dm6]	T	A	2.581e^-4	0.868	INTRON CG42797	TF binding site mE1_TFBS_cad
3R	13810871	3R_13810871_SNP [dm3] 3R_17985149_SNP [dm6]	A	G	2.589e^-4	0.868	INTRON cpo
2L	6235859	2L_6235859_SNP [dm3] 2L_6235859_SNP [dm6]	T	A	2.596e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
X	15595823	X_15595823_SNP [dm3] X_15701790_SNP [dm6]	T	C	2.599e^-4	0.868	UTR_3_PRIME Pis UPSTREAM CG9240	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5027206	X_5027206_INS [dm3] X_5133173_INS [dm6]	C	CG	2.601e^-4	0.868	DOWNSTREAM Rpn13R INTRON rg & 1 other
2L	7199328	2L_7199328_SNP [dm3] 2L_7199328_SNP [dm6]	C	T	2.609e^-4	0.868	INTRON CG4502
3L	9535147	3L_9535147_SNP [dm3] 3L_9542047_SNP [dm6]	C	G	2.611e^-4	0.868	DOWNSTREAM Ir67a INTERGENIC
X	20706365	X_20706365_SNP [dm3] X_20835338_SNP [dm6]	T	C	2.635e^-4	0.868	INTRON shakB
3L	14879679	3L_14879679_SNP [dm3] 3L_14886579_SNP [dm6]	G	T	2.636e^-4	0.868	DOWNSTREAM CR44702 INTERGENIC
X	15597417	X_15597417_DEL [dm3] X_15703384_DEL [dm6]	CTCAATTGGGTTGGAC...	C	2.645e^-4	0.868	UPSTREAM CG8134 INTRON Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	19411341	2L_19411341_SNP [dm3] 2L_19411341_SNP [dm6]	G	A	2.655e^-4	0.868	UPSTREAM Pax INTRON Pax	insulator Insulator_Class_I.mE01
2R	13134494	2R_13134494_SNP [dm3] 2R_17246989_SNP [dm6]	C	T	2.663e^-4	0.868	SYNONYMOUS_CODING CG12699 UPSTREAM CG18469 INTRON mbl
2R	6154838	2R_6154838_SNP [dm3] 2R_10267333_SNP [dm6]	A	G	2.671e^-4	0.868	INTRON CG12910	TF binding site BDTNP1_TFBS_da
2L	5096216	2L_5096216_SNP [dm3] 2L_5096216_SNP [dm6]	G	T	2.676e^-4	0.868	UPSTREAM CG4230 DOWNSTREAM CG5828 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12251092	3R_12251092_SNP [dm3] 3R_16425370_SNP [dm6]	T	C	2.676e^-4	0.868	UPSTREAM tRNA:CR31497 INTERGENIC	regulatory region REDfly_CRMs
2L	14182073	2L_14182073_SNP [dm3] 2L_14182073_SNP [dm6]	G	C	2.679e^-4	0.868	INTERGENIC
3R	20172246	3R_20172246_SNP [dm3] 3R_24346524_SNP [dm6]	C	T	2.680e^-4	0.868	UTR_3_PRIME CG5746	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8502965	3L_8502965_SNP [dm3] 3L_8509865_SNP [dm6]	C	T	2.682e^-4	0.868	UPSTREAM CG6745 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	4768326	3R_4768326_DEL [dm3] 3R_8942604_DEL [dm6]	AAA	A	2.686e^-4	0.868	DOWNSTREAM CG11964 & 1 other INTRON skap
X	17506965	X_17506965_SNP [dm3] X_17612932_SNP [dm6]	G	C	2.691e^-4	0.868	INTERGENIC
2R	16815995	2R_16815995_SNP [dm3] 2R_20928490_SNP [dm6]	G	T	2.698e^-4	0.868	INTRON Rx
2L	11077544	2L_11077544_SNP [dm3] 2L_11077544_SNP [dm6]	A	G	2.699e^-4	0.868	INTRON AstC
2L	20884362	2L_20884362_SNP [dm3] 2L_20884362_SNP [dm6]	A	G	2.704e^-4	0.868	INTRON sky & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	13841411	2R_13841411_DEL [dm3] 2R_17953906_DEL [dm6]	CT	C	2.714e^-4	0.868	UPSTREAM CR44418 INTERGENIC
3L	2007562	3L_2007562_SNP [dm3] 3L_2007562_SNP [dm6]	C	T	2.716e^-4	0.868	INTERGENIC
2L	8188066	2L_8188066_SNP [dm3] 2L_8188066_SNP [dm6]	G	A	2.716e^-4	0.868	SYNONYMOUS_CODING Piezo
2L	4473096	2L_4473096_SNP [dm3] 2L_4473096_SNP [dm6]	C	A	2.716e^-4	0.868	UTR_5_PRIME ine INTRON ine
3L	11315373	3L_11315373_SNP [dm3] 3L_11322273_SNP [dm6]	A	T	2.718e^-4	0.868	UPSTREAM CG6168 INTERGENIC
X	17949758	X_17949758_SNP [dm3] X_18055725_SNP [dm6]	G	A	2.724e^-4	0.868	INTRON Sh
X	16010240	X_16010240_SNP [dm3] X_16116207_SNP [dm6]	T	A	2.733e^-4	0.868	INTERGENIC
3L	10283251	3L_10283251_SNP [dm3] 3L_10290151_SNP [dm6]	G	A	2.736e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10562857	3L_10562857_DEL [dm3] 3L_10569757_DEL [dm6]	AGAGCAAAA	A	2.741e^-4	0.868	INTRON A2bp1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	15597651	X_15597651_SNP [dm3] X_15703618_SNP [dm6]	T	C	2.748e^-4	0.868	NON_SYNONYMOUS_CODING Pis UPSTREAM CG8134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	6220476	2R_6220476_SNP [dm3] 2R_10332971_SNP [dm6]	A	G	2.771e^-4	0.868	INTRON CG42732
3R	10001653	3R_10001653_SNP [dm3] 3R_14175931_SNP [dm6]	A	G	2.771e^-4	0.868	UTR_3_PRIME Dop1R1
3R	25599958	3R_25599958_SNP [dm3] 3R_29774236_SNP [dm6]	A	C	2.772e^-4	0.868	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10543723	X_10543723_SNP [dm3] X_10649690_SNP [dm6]	G	C	2.774e^-4	0.868	INTRON X11Lbeta
2R	16954615	2R_16954615_SNP [dm3] 2R_21067110_SNP [dm6]	T	A	2.792e^-4	0.868	UPSTREAM Cht4 DOWNSTREAM Cht9 INTERGENIC	TF binding site mE1_TFBS_cad
3R	14398821	3R_14398821_SNP [dm3] 3R_18573099_SNP [dm6]	G	A	2.794e^-4	0.868	UTR_5_PRIME fray & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3R	14363523	3R_14363523_SNP [dm3] 3R_18537801_SNP [dm6]	C	T	2.798e^-4	0.868	INTRON fru
2R	13806730	2R_13806730_SNP [dm3] 2R_17919225_SNP [dm6]	G	T	2.801e^-4	0.868	INTRON Elk
X	15594439	X_15594439_SNP [dm3] X_15700406_SNP [dm6]	C	T	2.804e^-4	0.868	SYNONYMOUS_STOP CG9240 DOWNSTREAM CG8128	TF binding site mE1_TFBS_HSA
3R	24828165	3R_24828165_SNP [dm3] 3R_29002443_SNP [dm6]	A	T	2.806e^-4	0.868	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12982242	2L_12982242_SNP [dm3] 2L_12982242_SNP [dm6]	T	G	2.807e^-4	0.868	DOWNSTREAM Vha68-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15598315	X_15598315_SNP [dm3] X_15704282_SNP [dm6]	C	G	2.814e^-4	0.868	NON_SYNONYMOUS_CODING CG8134 UPSTREAM Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7424570	3R_7424570_SNP [dm3] 3R_11598848_SNP [dm6]	A	G	2.816e^-4	0.868	INTRON Jupiter
3L	2597659	3L_2597659_SNP [dm3] 3L_2597659_SNP [dm6]	T	C	2.823e^-4	0.868	SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_sens
2R	17125733	2R_17125733_SNP [dm3] 2R_21238228_SNP [dm6]	G	T	2.824e^-4	0.868	INTRON ASPP
X	18984399	X_18984399_SNP [dm3] X_19090366_SNP [dm6]	A	T	2.825e^-4	0.868	INTERGENIC
3R	20932442	3R_20932442_SNP [dm3] 3R_25106720_SNP [dm6]	C	T	2.825e^-4	0.868	NON_SYNONYMOUS_CODING CG34027
X	17972961	X_17972961_INS [dm3] X_18078928_INS [dm6]	C	CTC	2.827e^-4	0.868	UTR_3_PRIME CG7536 DOWNSTREAM CG7536 & 1 other
3R	4749553	3R_4749553_SNP [dm3] 3R_8923831_SNP [dm6]	A	T	2.828e^-4	0.868	INTRON pyd
X	15597506	X_15597506_SNP [dm3] X_15703473_SNP [dm6]	G	A	2.828e^-4	0.868	UPSTREAM CG8134 INTRON Pis	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	15009119	X_15009119_SNP [dm3] X_15115086_SNP [dm6]	A	G	2.834e^-4	0.868	SYNONYMOUS_CODING Cyp4s3
3R	969064	3R_969064_SNP [dm3] 3R_5143342_SNP [dm6]	C	T	2.838e^-4	0.868	INTERGENIC
X	20746355	X_20746355_SNP [dm3] X_20875328_SNP [dm6]	G	A	2.840e^-4	0.868	DOWNSTREAM CR11235 INTRON shakB
X	6793563	X_6793563_SNP [dm3] X_6899530_SNP [dm6]	A	T	2.842e^-4	0.868	INTERGENIC
3L	21902772	3L_21902772_SNP [dm3] 3L_21909672_SNP [dm6]	C	A	2.842e^-4	0.868	INTRON mub	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17759800	2R_17759800_SNP [dm3] 2R_21872295_SNP [dm6]	T	C	2.862e^-4	0.868	UTR_5_PRIME Fili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	19413311	2L_19413311_SNP [dm3] 2L_19413311_SNP [dm6]	A	T	2.875e^-4	0.868	INTRON Pax	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3259111	X_3259111_SNP [dm3] X_3365078_SNP [dm6]	T	C	2.880e^-4	0.868	INTERGENIC
X	20719262	X_20719262_SNP [dm3] X_20848235_SNP [dm6]	T	G	2.881e^-4	0.868	INTRON shakB
2L	6235851	2L_6235851_SNP [dm3] 2L_6235851_SNP [dm6]	G	C	2.882e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
2L	15389872	2L_15389872_SNP [dm3] 2L_15389872_SNP [dm6]	G	T	2.890e^-4	0.868	INTERGENIC
X	20706245	X_20706245_SNP [dm3] X_20835218_SNP [dm6]	T	A	2.900e^-4	0.868	INTRON shakB
3L	11667149	3L_11667149_INS [dm3] 3L_11674049_INS [dm6]	T	AA	2.907e^-4	0.868	INTRON CG32085
2L	20899886	2L_20899886_SNP [dm3] 2L_20899886_SNP [dm6]	C	T	2.915e^-4	0.868	INTRON sky & 1 other
3R	24580278	3R_24580278_SNP [dm3] 3R_28754556_SNP [dm6]	T	C	2.941e^-4	0.868	DOWNSTREAM CG9997 INTERGENIC	TF binding site mE1_TFBS_inv
3R	982525	3R_982525_SNP [dm3] 3R_5156803_SNP [dm6]	C	T	2.949e^-4	0.868	INTRON dpr16
2L	1822182	2L_1822182_SNP [dm3] 2L_1822182_SNP [dm6]	A	G	2.955e^-4	0.868	SYNONYMOUS_CODING CG31933
2R	14894658	2R_14894658_SNP [dm3] 2R_19007153_SNP [dm6]	C	T	2.956e^-4	0.868	INTRON tn
2R	17676154	2R_17676154_SNP [dm3] 2R_21788649_SNP [dm6]	T	G	2.956e^-4	0.868	DOWNSTREAM lox2 INTERGENIC
2R	14373897	2R_14373897_SNP [dm3] 2R_18486392_SNP [dm6]	A	C	2.963e^-4	0.868	INTRON CG30116
2R	16705130	2R_16705130_SNP [dm3] 2R_20817625_SNP [dm6]	A	G	2.964e^-4	0.868	INTERGENIC
2L	1635284	2L_1635284_SNP [dm3] 2L_1635284_SNP [dm6]	G	T	2.965e^-4	0.868	INTERGENIC
2R	17760585	2R_17760585_SNP [dm3] 2R_21873080_SNP [dm6]	C	G	2.970e^-4	0.868	INTRON Fili
X	15346837	X_15346837_SNP [dm3] X_15452804_SNP [dm6]	G	A	2.971e^-4	0.868	UTR_3_PRIME Ahcy13 UPSTREAM CG11655 DOWNSTREAM Ahcy13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	3529187	X_3529187_INS [dm3] X_3635154_INS [dm6]	C	CC	2.984e^-4	0.868	INTRON AstA-R1
2L	8756017	2L_8756017_SNP [dm3] 2L_8756017_SNP [dm6]	T	A	2.984e^-4	0.868	INTERGENIC
X	20748514	X_20748514_SNP [dm3] X_20877487_SNP [dm6]	T	A	2.987e^-4	0.868	INTRON shakB
3L	4487599	3L_4487599_SNP [dm3] 3L_4487599_SNP [dm6]	T	G	2.995e^-4	0.868	INTRON CG13722
3R	15181003	3R_15181003_SNP [dm3] 3R_19355281_SNP [dm6]	G	T	2.999e^-4	0.868	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	21011782	3R_21011782_DEL [dm3] 3R_25186060_DEL [dm6]	AAATG	A	3.007e^-4	0.868	INTRON lobo & 1 other
3R	3389382	3R_3389382_SNP [dm3] 3R_7563660_SNP [dm6]	A	T	3.009e^-4	0.868	INTERGENIC
2R	4831727	2R_4831727_SNP [dm3] 2R_8944222_SNP [dm6]	C	T	3.013e^-4	0.868	DOWNSTREAM CG8230 EXON CR44274
2L	8450620	2L_8450620_SNP [dm3] 2L_8450620_SNP [dm6]	G	A	3.014e^-4	0.868	SYNONYMOUS_CODING fu12	TF binding site mE1_TFBS_HSA
2L	8721801	2L_8721801_SNP [dm3] 2L_8721801_SNP [dm6]	A	T	3.016e^-4	0.868	INTRON raw
3R	4748006	3R_4748006_SNP [dm3] 3R_8922284_SNP [dm6]	T	C	3.018e^-4	0.868	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2999972	3L_2999972_SNP [dm3] 3L_2999972_SNP [dm6]	G	T	3.018e^-4	0.868	INTERGENIC
3L	19916906	3L_19916906_SNP [dm3] 3L_19923806_SNP [dm6]	C	T	3.020e^-4	0.868	START_GAINED CG7770 UTR_5_PRIME CG7770 UPSTREAM Su_z_12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4504519	3L_4504519_SNP [dm3] 3L_4504519_SNP [dm6]	A	C	3.029e^-4	0.868	NON_SYNONYMOUS_CODING NT1	TF binding site mE1_TFBS_cad
3L	1697206	3L_1697206_SNP [dm3] 3L_1697206_SNP [dm6]	C	T	3.033e^-4	0.868	DOWNSTREAM CG12011 INTRON CG7991
X	6383545	X_6383545_DEL [dm3] X_6489512_DEL [dm6]	AA	A	3.036e^-4	0.868	INTRON CG42340
X	17708761	X_17708761_SNP [dm3] X_17814728_SNP [dm6]	A	T	3.050e^-4	0.868	DOWNSTREAM OdsH INTERGENIC
2L	15154624	2L_15154624_DEL [dm3] 2L_15154624_DEL [dm6]	AAGGGCGCAGGACGT...	A	3.055e^-4	0.868	INTERGENIC
3R	20932416	3R_20932416_DEL [dm3] 3R_25106694_DEL [dm6]	GTTCAACGCTTTCAAT...	C	3.055e^-4	0.868
3L	11996356	3L_11996356_SNP [dm3] 3L_12003256_SNP [dm6]	G	A	3.056e^-4	0.868	UTR_5_PRIME CG6928 UPSTREAM Pop2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	3531454	X_3531454_SNP [dm3] X_3637421_SNP [dm6]	A	T	3.057e^-4	0.868	INTRON AstA-R1
2L	15512311	2L_15512311_SNP [dm3] 2L_15512311_SNP [dm6]	T	A	3.059e^-4	0.868	INTERGENIC
2L	8331148	2L_8331148_SNP [dm3] 2L_8331148_SNP [dm6]	C	T	3.060e^-4	0.868	INTRON CG14275
3L	3426702	3L_3426702_SNP [dm3] 3L_3426702_SNP [dm6]	G	A	3.071e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26574076	3R_26574076_SNP [dm3] 3R_30748354_SNP [dm6]	C	T	3.074e^-4	0.868	INTERGENIC
X	17949973	X_17949973_SNP [dm3] X_18055940_SNP [dm6]	G	A	3.080e^-4	0.868	INTRON Sh
X	13153086	X_13153086_SNP [dm3] X_13259053_SNP [dm6]	T	C	3.086e^-4	0.868	UTR_5_PRIME comt UPSTREAM CG15742 & 1 other
X	17897149	X_17897149_SNP [dm3] X_18003116_SNP [dm6]	A	G	3.087e^-4	0.868	INTRON Sh
3R	9925674	3R_9925674_SNP [dm3] 3R_14099952_SNP [dm6]	A	G	3.091e^-4	0.868	UTR_3_PRIME PK1-R DOWNSTREAM PK1-R
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	3.096e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19069219	3R_19069219_SNP [dm3] 3R_23243497_SNP [dm6]	A	T	3.097e^-4	0.868	INTRON CG4467	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8450856	2L_8450856_SNP [dm3] 2L_8450856_SNP [dm6]	A	C	3.107e^-4	0.868	SYNONYMOUS_CODING fu12
2R	14373920	2R_14373920_SNP [dm3] 2R_18486415_SNP [dm6]	G	C	3.112e^-4	0.868	INTRON CG30116
3L	15440598	3L_15440598_SNP [dm3] 3L_15447498_SNP [dm6]	G	A	3.114e^-4	0.868	INTERGENIC
X	12662789	X_12662789_SNP [dm3] X_12768756_SNP [dm6]	A	T	3.118e^-4	0.868	INTRON CG3812
3R	24376403	3R_24376403_SNP [dm3] 3R_28550681_SNP [dm6]	G	A	3.126e^-4	0.868	INTERGENIC
2R	2626413	2R_2626413_SNP [dm3] 2R_6738908_SNP [dm6]	C	G	3.140e^-4	0.868	INTRON l_2_01289
3L	11454265	3L_11454265_SNP [dm3] 3L_11461165_SNP [dm6]	G	A	3.143e^-4	0.868	INTERGENIC
X	17262295	X_17262295_SNP [dm3] X_17368262_SNP [dm6]	A	G	3.148e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17676178	2R_17676178_DEL [dm3] 2R_21788673_DEL [dm6]	CG	C	3.149e^-4	0.868	DOWNSTREAM lox2 INTERGENIC
2L	5937206	2L_5937206_SNP [dm3] 2L_5937206_SNP [dm6]	T	A	3.154e^-4	0.868	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17676181	2R_17676181_SNP [dm3] 2R_21788676_SNP [dm6]	T	G	3.157e^-4	0.868	DOWNSTREAM lox2 INTERGENIC
3R	25700407	3R_25700407_SNP [dm3] 3R_29874685_SNP [dm6]	T	C	3.160e^-4	0.868	UTR_3_PRIME CG34133
X	3531907	X_3531907_SNP [dm3] X_3637874_SNP [dm6]	C	T	3.161e^-4	0.868	INTRON AstA-R1
3L	2990499	3L_2990499_SNP [dm3] 3L_2990499_SNP [dm6]	G	T	3.186e^-4	0.868	INTERGENIC
3R	11644156	3R_11644156_DEL [dm3] 3R_15818434_DEL [dm6]	AG	A	3.194e^-4	0.868	INTRON alpha-Man-IIb
2R	6325027	2R_6325027_SNP [dm3] 2R_10437522_SNP [dm6]	G	A	3.194e^-4	0.868	UPSTREAM Galphao & 1 other DOWNSTREAM RanBPM INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	15884055	2L_15884055_SNP [dm3] 2L_15884055_SNP [dm6]	A	C	3.211e^-4	0.868	UPSTREAM CG44475 INTERGENIC
2L	20903956	2L_20903956_SNP [dm3] 2L_20903956_SNP [dm6]	G	T	3.212e^-4	0.868	INTRON sky & 1 other
3L	5618818	3L_5618818_SNP [dm3] 3L_5625718_SNP [dm6]	A	C	3.215e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19506514	2L_19506514_SNP [dm3] 2L_19506514_SNP [dm6]	C	G	3.217e^-4	0.868	INTRON CG10188
2R	6876366	2R_6876366_DEL [dm3] 2R_10988861_DEL [dm6]	TG	T	3.217e^-4	0.868	INTRON luna
X	18404822	X_18404822_SNP [dm3] X_18510789_SNP [dm6]	C	T	3.219e^-4	0.868	INTRON Ggt-1	TF binding site mE1_TFBS_cnc
3L	14514283	3L_14514283_SNP [dm3] 3L_14521183_SNP [dm6]	C	A	3.229e^-4	0.868	INTRON bbg & 1 other
2R	16930121	2R_16930121_SNP [dm3] 2R_21042616_SNP [dm6]	A	G	3.239e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1278708	3L_1278708_SNP [dm3] 3L_1278708_SNP [dm6]	C	T	3.240e^-4	0.868	INTRON CG32333
3L	3782523	3L_3782523_SNP [dm3] 3L_3782523_SNP [dm6]	A	G	3.243e^-4	0.868	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	1003937	3R_1003937_SNP [dm3] 3R_5178215_SNP [dm6]	T	C	3.256e^-4	0.868	DOWNSTREAM cno INTRON cno
3R	6727126	3R_6727126_SNP [dm3] 3R_10901404_SNP [dm6]	C	T	3.258e^-4	0.868	INTERGENIC
X	16010204	X_16010204_SNP [dm3] X_16116171_SNP [dm6]	A	G	3.275e^-4	0.868	INTERGENIC
2R	14624776	2R_14624776_SNP [dm3] 2R_18737271_SNP [dm6]	A	T	3.282e^-4	0.868	INTRON Hs3st-A	TF binding site mE1_TFBS_kn
2R	14624779	2R_14624779_SNP [dm3] 2R_18737274_SNP [dm6]	C	T	3.282e^-4	0.868	INTRON Hs3st-A	TF binding site mE1_TFBS_kn
X	6863588	X_6863588_SNP [dm3] X_6969555_SNP [dm6]	G	T	3.283e^-4	0.868	UPSTREAM CG32732 & 1 other DOWNSTREAM CG14431 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6330954	X_6330954_SNP [dm3] X_6436921_SNP [dm6]	A	C	3.287e^-4	0.868	INTRON CG42340
2R	9254019	2R_9254019_SNP [dm3] 2R_13366514_SNP [dm6]	C	T	3.288e^-4	0.868	INTERGENIC
2R	7675125	2R_7675125_DEL [dm3] 2R_11787620_DEL [dm6]	TT	T	3.289e^-4	0.868	DOWNSTREAM Ir48c INTRON ths
2R	12741249	2R_12741249_SNP [dm3] 2R_16853744_SNP [dm6]	G	T	3.289e^-4	0.868	SPLICE_SITE_REGION IntS8 DOWNSTREAM Fen1 INTRON IntS8	TF binding site mE1_TFBS_cad
X	6181094	X_6181094_SNP [dm3] X_6287061_SNP [dm6]	C	T	3.299e^-4	0.868	SYNONYMOUS_CODING Top3beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	12361698	2R_12361698_SNP [dm3] 2R_16474193_SNP [dm6]	T	C	3.306e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	13821217	2R_13821217_SNP [dm3] 2R_17933712_SNP [dm6]	T	A	3.324e^-4	0.868	INTERGENIC
3R	15180998	3R_15180998_SNP [dm3] 3R_19355276_SNP [dm6]	G	A	3.330e^-4	0.868	DOWNSTREAM CG43203 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	10882763	3R_10882763_SNP [dm3] 3R_15057041_SNP [dm6]	A	T	3.332e^-4	0.868	UTR_3_PRIME dpr9
2L	20899246	2L_20899246_SNP [dm3] 2L_20899246_SNP [dm6]	C	T	3.333e^-4	0.868	INTRON sky & 1 other
2R	15040853	2R_15040853_SNP [dm3] 2R_19153348_SNP [dm6]	T	G	3.334e^-4	0.868	INTRON ena	TF binding site mE1_TFBS_sens
3R	18210537	3R_18210537_SNP [dm3] 3R_22384815_SNP [dm6]	C	G	3.338e^-4	0.868	NON_SYNONYMOUS_CODING CG43343	TF binding site mE1_TFBS_HSA
3R	6423034	3R_6423034_SNP [dm3] 3R_10597312_SNP [dm6]	T	G	3.341e^-4	0.868	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5568900	3L_5568900_SNP [dm3] 3L_5575800_SNP [dm6]	C	T	3.344e^-4	0.868	UPSTREAM Msr-110 INTRON Msr-110
3R	22808000	3R_22808000_SNP [dm3] 3R_26982278_SNP [dm6]	C	A	3.347e^-4	0.868	INTRON CG14253
2L	13937463	2L_13937463_SNP [dm3] 2L_13937463_SNP [dm6]	G	A	3.347e^-4	0.868	INTRON Ance-3
X	19774157	X_19774157_SNP [dm3] X_19880124_SNP [dm6]	G	T	3.358e^-4	0.868	INTRON Hers
3L	12836358	3L_12836358_SNP [dm3] 3L_12843258_SNP [dm6]	A	T	3.363e^-4	0.868	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	711638	2R_711638_SNP [dm3] 2R_4824133_SNP [dm6]	C	T	3.366e^-4	0.868	UTR_5_PRIME CG17528	TF binding site mE1_TFBS_zfh1
X	3144122	X_3144122_SNP [dm3] X_3250089_SNP [dm6]	C	A	3.370e^-4	0.868	NON_SYNONYMOUS_CODING Sgs4 UPSTREAM Pig1 INTRON dnc	regulatory region REDfly_CRMs
X	19496086	X_19496086_SNP [dm3] X_19602053_SNP [dm6]	C	A	3.373e^-4	0.868	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	7519110	3L_7519110_SNP [dm3] 3L_7526010_SNP [dm6]	G	A	3.377e^-4	0.868	INTRON ltl
3R	22687864	3R_22687864_SNP [dm3] 3R_26862142_SNP [dm6]	A	G	3.383e^-4	0.868	SYNONYMOUS_CODING Lerp UPSTREAM mir-1012	TF binding site BDTNP1_TFBS_dl
3R	16580308	3R_16580308_SNP [dm3] 3R_20754586_SNP [dm6]	C	A	3.391e^-4	0.868	DOWNSTREAM CG42322 INTRON CG42322
2R	6154475	2R_6154475_SNP [dm3] 2R_10266970_SNP [dm6]	C	A	3.393e^-4	0.868	SYNONYMOUS_CODING CG12910 INTRON CG12910	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	17066617	3R_17066617_SNP [dm3] 3R_21240895_SNP [dm6]	T	C	3.398e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs
3R	17066593	3R_17066593_SNP [dm3] 3R_21240871_SNP [dm6]	C	T	3.400e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs
3R	9779168	3R_9779168_SNP [dm3] 3R_13953446_SNP [dm6]	A	T	3.406e^-4	0.868	INTERGENIC
2R	4896736	2R_4896736_SNP [dm3] 2R_9009231_SNP [dm6]	G	A	3.410e^-4	0.868	SPLICE_SITE_REGION CG8172 UTR_5_PRIME CG8172 INTRON CG8172	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19799747	X_19799747_SNP [dm3] X_19905714_SNP [dm6]	C	T	3.412e^-4	0.868	UTR_3_PRIME Hers
X	19774401	X_19774401_SNP [dm3] X_19880368_SNP [dm6]	C	A	3.415e^-4	0.868	INTRON Hers
2L	3215780	2L_3215780_SNP [dm3] 2L_3215780_SNP [dm6]	G	T	3.417e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9738043	2R_9738043_SNP [dm3] 2R_13850538_SNP [dm6]	T	A	3.421e^-4	0.868	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	7141760	2L_7141760_SNP [dm3] 2L_7141760_SNP [dm6]	T	C	3.421e^-4	0.868	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	13879991	2L_13879991_SNP [dm3] 2L_13879991_SNP [dm6]	T	A	3.421e^-4	0.868	INTRON CenG1A	TF binding site mE1_TFBS_HSA
X	15597929	X_15597929_SNP [dm3] X_15703896_SNP [dm6]	G	A	3.423e^-4	0.868	UPSTREAM CG8134 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	5934218	2L_5934218_SNP [dm3] 2L_5934218_SNP [dm6]	T	C	3.423e^-4	0.868	INTRON dsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	27161865	3R_27161865_SNP [dm3] 3R_31336143_SNP [dm6]	A	C	3.424e^-4	0.868	INTRON CG34347
3R	13078971	3R_13078971_SNP [dm3] 3R_17253249_SNP [dm6]	G	A	3.425e^-4	0.868	DOWNSTREAM CG44259 INTRON beat-IIb
X	17505896	X_17505896_SNP [dm3] X_17611863_SNP [dm6]	G	T	3.451e^-4	0.868	INTERGENIC
3L	2597053	3L_2597053_SNP [dm3] 3L_2597053_SNP [dm6]	C	A	3.452e^-4	0.868	SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19509996	2L_19509996_SNP [dm3] 2L_19509996_SNP [dm6]	C	T	3.452e^-4	0.868	SYNONYMOUS_CODING CG10186 DOWNSTREAM CG10186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14373794	2R_14373794_SNP [dm3] 2R_18486289_SNP [dm6]	T	C	3.453e^-4	0.868	INTRON CG30116
3L	11669823	3L_11669823_SNP [dm3] 3L_11676723_SNP [dm6]	C	A	3.454e^-4	0.868	INTRON CG32085
2L	19387442	2L_19387442_SNP [dm3] 2L_19387442_SNP [dm6]	T	A	3.460e^-4	0.868	INTRON CG17549
2L	4590721	2L_4590721_SNP [dm3] 2L_4590721_SNP [dm6]	T	A	3.461e^-4	0.868	INTRON dp
2L	1701887	2L_1701887_SNP [dm3] 2L_1701887_SNP [dm6]	C	T	3.461e^-4	0.868	UTR_3_PRIME chinmo
X	5816080	X_5816080_SNP [dm3] X_5922047_SNP [dm6]	T	G	3.462e^-4	0.868	INTRON CG3726
3R	1127632	3R_1127632_SNP [dm3] 3R_5301910_SNP [dm6]	C	A	3.464e^-4	0.868	DOWNSTREAM Tim17b1 INTRON mtd
3L	13748380	3L_13748380_SNP [dm3] 3L_13755280_SNP [dm6]	G	A	3.476e^-4	0.868	INTRON bru-3
3L	17665322	3L_17665322_SNP [dm3] 3L_17672222_SNP [dm6]	T	C	3.487e^-4	0.868	INTRON CG34251
3L	1134989	3L_1134989_SNP [dm3] 3L_1134989_SNP [dm6]	G	T	3.492e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs
2L	17603373	2L_17603373_SNP [dm3] 2L_17603373_SNP [dm6]	C	G	3.493e^-4	0.868	UTR_3_PRIME Sytalpha	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8454055	3L_8454055_SNP [dm3] 3L_8460955_SNP [dm6]	C	T	3.493e^-4	0.868	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15375861	2L_15375861_SNP [dm3] 2L_15375861_SNP [dm6]	C	T	3.498e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	14760717	2L_14760717_SNP [dm3] 2L_14760717_SNP [dm6]	A	G	3.499e^-4	0.868	UPSTREAM CG4691 INTERGENIC
X	19496109	X_19496109_SNP [dm3] X_19602076_SNP [dm6]	A	T	3.501e^-4	0.868	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	16136117	2R_16136117_SNP [dm3] 2R_20248612_SNP [dm6]	G	A	3.510e^-4	0.868	SYNONYMOUS_CODING CG9864 UPSTREAM ppk6	TF binding site mE1_TFBS_cad
X	5022545	X_5022545_SNP [dm3] X_5128512_SNP [dm6]	T	A	3.512e^-4	0.868	INTRON rg & 1 other
X	15739594	X_15739594_SNP [dm3] X_15845561_SNP [dm6]	A	C	3.514e^-4	0.868	INTRON CG8578
3R	9599078	3R_9599078_SNP [dm3] 3R_13773356_SNP [dm6]	A	T	3.518e^-4	0.868	INTRON CG9297
2L	2764095	2L_2764095_SNP [dm3] 2L_2764095_SNP [dm6]	G	A	3.528e^-4	0.868	UTR_3_PRIME CG3077 DOWNSTREAM Trn-SR
2L	20413895	2L_20413895_SNP [dm3] 2L_20413895_SNP [dm6]	T	G	3.533e^-4	0.868	INTRON CG10947	transposable element FlyBase
2R	16817827	2R_16817827_SNP [dm3] 2R_20930322_SNP [dm6]	A	T	3.537e^-4	0.868	INTRON Rx
X	10148498	X_10148498_SNP [dm3] X_10254465_SNP [dm6]	G	A	3.539e^-4	0.868	INTRON Hk
3R	1016009	3R_1016009_SNP [dm3] 3R_5190287_SNP [dm6]	G	A	3.540e^-4	0.868	INTRON cno
2R	8253161	2R_8253161_SNP [dm3] 2R_12365656_SNP [dm6]	T	G	3.542e^-4	0.868	INTRON CR33013
X	2231612	X_2231612_SNP [dm3] X_2337579_SNP [dm6]	A	T	3.545e^-4	0.868	INTRON phl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11312685	3L_11312685_SNP [dm3] 3L_11319585_SNP [dm6]	A	C	3.553e^-4	0.868	DOWNSTREAM CG6168 INTERGENIC
3R	22687402	3R_22687402_SNP [dm3] 3R_26861680_SNP [dm6]	C	G	3.558e^-4	0.868	SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
3R	13290057	3R_13290057_SNP [dm3] 3R_17464335_SNP [dm6]	C	A	3.558e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
2L	19933728	2L_19933728_SNP [dm3] 2L_19933728_SNP [dm6]	T	G	3.566e^-4	0.868	INTRON sick EXON CR45183
2R	13167053	2R_13167053_SNP [dm3] 2R_17279548_SNP [dm6]	G	A	3.573e^-4	0.868	INTRON mbl
2R	8717045	2R_8717045_SNP [dm3] 2R_12829540_SNP [dm6]	G	C	3.576e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	14376471	3R_14376471_DEL [dm3] 3R_18550749_DEL [dm6]	GCGAT	G	3.577e^-4	0.868	INTERGENIC
3R	17058833	3R_17058833_SNP [dm3] 3R_21233111_SNP [dm6]	C	T	3.599e^-4	0.868	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	2591797	3L_2591797_SNP [dm3] 3L_2591797_SNP [dm6]	C	A	3.605e^-4	0.868	INTRON dos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1817451	3L_1817451_SNP [dm3] 3L_1817451_SNP [dm6]	A	C	3.613e^-4	0.868	INTRON GV1
3R	16440684	3R_16440684_SNP [dm3] 3R_20614962_SNP [dm6]	T	C	3.618e^-4	0.868	NON_SYNONYMOUS_CODING CG15923	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14374799	2R_14374799_SNP [dm3] 2R_18487294_SNP [dm6]	T	G	3.620e^-4	0.868	INTRON CG30116
2R	6153835	2R_6153835_SNP [dm3] 2R_10266330_SNP [dm6]	T	A	3.630e^-4	0.868	UTR_5_PRIME CG12910 UPSTREAM CG12910 INTRON CG12910
2L	14182087	2L_14182087_SNP [dm3] 2L_14182087_SNP [dm6]	T	G	3.633e^-4	0.868	INTERGENIC
3L	15020950	3L_15020950_SNP [dm3] 3L_15027850_SNP [dm6]	T	C	3.638e^-4	0.868	INTRON Sytbeta
2L	10094736	2L_10094736_SNP [dm3] 2L_10094736_SNP [dm6]	G	A	3.647e^-4	0.868	INTRON CG44153 & 1 other
2R	16707357	2R_16707357_SNP [dm3] 2R_20819852_SNP [dm6]	T	C	3.649e^-4	0.868	INTERGENIC
2L	6009788	2L_6009788_SNP [dm3] 2L_6009788_SNP [dm6]	T	A	3.649e^-4	0.868	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21288867	3L_21288867_SNP [dm3] 3L_21295767_SNP [dm6]	G	A	3.664e^-4	0.868	NON_SYNONYMOUS_CODING Cpr78Cb DOWNSTREAM Edg78E
2L	15166526	2L_15166526_SNP [dm3] 2L_15166526_SNP [dm6]	A	G	3.670e^-4	0.868	SYNONYMOUS_CODING CG4168
2L	7805150	2L_7805150_SNP [dm3] 2L_7805150_SNP [dm6]	T	C	3.674e^-4	0.868	NON_SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	6234180	2R_6234180_SNP [dm3] 2R_10346675_SNP [dm6]	T	C	3.679e^-4	0.868	INTRON CG42732
2L	5734413	2L_5734413_SNP [dm3] 2L_5734413_SNP [dm6]	G	A	3.680e^-4	0.868	SYNONYMOUS_CODING CG11147 INTRON CG11030
3R	7516121	3R_7516121_SNP [dm3] 3R_11690399_SNP [dm6]	C	G	3.682e^-4	0.868	UTR_3_PRIME CG18765 UPSTREAM CG6908	TF binding site mE1_TFBS_cnc
3L	11667068	3L_11667068_SNP [dm3] 3L_11673968_SNP [dm6]	A	G	3.687e^-4	0.868	INTRON CG32085
3R	24131826	3R_24131826_SNP [dm3] 3R_28306104_SNP [dm6]	A	G	3.692e^-4	0.868	INTERGENIC
2R	9254287	2R_9254287_SNP [dm3] 2R_13366782_SNP [dm6]	T	A	3.705e^-4	0.868	INTERGENIC
3R	994449	3R_994449_INS [dm3] 3R_5168727_INS [dm6]	C	CCTTGGGC	3.713e^-4	0.868	INTRON dpr16	transposable element FlyBase
3L	2995403	3L_2995403_SNP [dm3] 3L_2995403_SNP [dm6]	G	T	3.719e^-4	0.868	NON_SYNONYMOUS_CODING CG2113
3L	3267402	3L_3267402_SNP [dm3] 3L_3267402_SNP [dm6]	T	C	3.724e^-4	0.868	INTRON ckd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	6158022	2R_6158022_SNP [dm3] 2R_10270517_SNP [dm6]	C	A	3.726e^-4	0.868	INTRON CAP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_inv
2L	7626221	2L_7626221_DEL [dm3] 2L_7626221_DEL [dm6]	GAATTTTC	G	3.726e^-4	0.868	INTERGENIC
2R	12668173	2R_12668173_SNP [dm3] 2R_16780668_SNP [dm6]	C	T	3.727e^-4	0.868	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	6414719	3R_6414719_INS [dm3] 3R_10588997_INS [dm6]	G	GACTGGGG	3.728e^-4	0.868	INTRON hth
2R	16112393	2R_16112393_SNP [dm3] 2R_20224888_SNP [dm6]	G	A	3.729e^-4	0.868	INTERGENIC
3R	982539	3R_982539_DEL [dm3] 3R_5156817_DEL [dm6]	TGGGGCAACCCCCTATACTA...	T	3.737e^-4	0.868	INTRON dpr16
X	3531017	X_3531017_SNP [dm3] X_3636984_SNP [dm6]	A	C	3.740e^-4	0.868	INTRON AstA-R1
2R	15542842	2R_15542842_SNP [dm3] 2R_19655337_SNP [dm6]	C	T	3.741e^-4	0.868	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	16443826	3L_16443826_SNP [dm3] 3L_16450726_SNP [dm6]	C	T	3.748e^-4	0.868	SYNONYMOUS_CODING dsx-c73A INTRON CG33158	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4473278	2L_4473278_SNP [dm3] 2L_4473278_SNP [dm6]	T	C	3.750e^-4	0.868	UPSTREAM ine INTRON ine
X	15592740	X_15592740_SNP [dm3] X_15698707_SNP [dm6]	C	T	3.755e^-4	0.868	INTRON CG8128
2L	12182714	2L_12182714_DEL [dm3] 2L_12182714_DEL [dm6]	AAAATGAACGGGCATTTAAC...	A	3.758e^-4	0.868	INTRON aret
3L	12971754	3L_12971754_SNP [dm3] 3L_12978654_SNP [dm6]	T	C	3.763e^-4	0.868	INTERGENIC
2L	17950099	2L_17950099_SNP [dm3] 2L_17950099_SNP [dm6]	A	C	3.763e^-4	0.868	DOWNSTREAM CR44397 INTRON CR44398
3L	12636470	3L_12636470_SNP [dm3] 3L_12643370_SNP [dm6]	A	T	3.767e^-4	0.868	INTRON CR32111	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	15687350	X_15687350_SNP [dm3] X_15793317_SNP [dm6]	G	A	3.769e^-4	0.868	SYNONYMOUS_CODING Rhp DOWNSTREAM CG8974
2L	8421745	2L_8421745_SNP [dm3] 2L_8421745_SNP [dm6]	T	A	3.770e^-4	0.868	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2605535	3L_2605535_SNP [dm3] 3L_2605535_SNP [dm6]	G	A	3.770e^-4	0.868	INTRON Pxn	TF binding site mE1_TFBS_chinmo
2R	19357001	2R_19357001_SNP [dm3] 2R_23469478_SNP [dm6]	G	T	3.776e^-4	0.868	DOWNSTREAM Or59b INTRON CG43795
3R	10410243	3R_10410243_SNP [dm3] 3R_14584521_SNP [dm6]	T	G	3.778e^-4	0.868	INTRON stumps
3R	16036527	3R_16036527_SNP [dm3] 3R_20210805_SNP [dm6]	C	T	3.779e^-4	0.868	INTRON Nlg4
3R	25599756	3R_25599756_SNP [dm3] 3R_29774034_SNP [dm6]	G	A	3.780e^-4	0.868	INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	10093219	X_10093219_DEL [dm3] X_10199186_DEL [dm6]	TCTATCGCCCCT...	T	3.786e^-4	0.868	INTRON CR44894
X	3529727	X_3529727_SNP [dm3] X_3635694_SNP [dm6]	C	A	3.795e^-4	0.868	INTRON AstA-R1
2L	19377622	2L_19377622_SNP [dm3] 2L_19377622_SNP [dm6]	T	C	3.817e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1451557	3L_1451557_SNP [dm3] 3L_1451557_SNP [dm6]	G	C	3.818e^-4	0.868	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo
X	15592925	X_15592925_INS [dm3] X_15698892_INS [dm6]	A	AAATA	3.825e^-4	0.868	INTRON CG8128
3R	10001581	3R_10001581_SNP [dm3] 3R_14175859_SNP [dm6]	C	T	3.835e^-4	0.868	UTR_3_PRIME Dop1R1
3L	11949768	3L_11949768_SNP [dm3] 3L_11956668_SNP [dm6]	G	C	3.836e^-4	0.868	SYNONYMOUS_CODING CG7248 DOWNSTREAM CG11570
3L	12238460	3L_12238460_SNP [dm3] 3L_12245360_SNP [dm6]	T	A	3.843e^-4	0.868	DOWNSTREAM CR43991 INTRON app
3R	22810508	3R_22810508_SNP [dm3] 3R_26984786_SNP [dm6]	A	G	3.851e^-4	0.868	SYNONYMOUS_CODING CG14253 DOWNSTREAM CG31075	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4210957	2L_4210957_SNP [dm3] 2L_4210957_SNP [dm6]	A	G	3.859e^-4	0.868	INTRON ft
X	15592868	X_15592868_SNP [dm3] X_15698835_SNP [dm6]	G	A	3.872e^-4	0.868	SYNONYMOUS_CODING CG8128
3L	1931804	3L_1931804_SNP [dm3] 3L_1931804_SNP [dm6]	C	A	3.872e^-4	0.868	INTRON Dbx
3L	1692768	3L_1692768_SNP [dm3] 3L_1692768_SNP [dm6]	T	G	3.877e^-4	0.868	INTRON CG7991	TF binding site mE1_TFBS_cad
2L	4348798	2L_4348798_SNP [dm3] 2L_4348798_SNP [dm6]	G	A	3.884e^-4	0.868	UPSTREAM CR44699 DOWNSTREAM CR44697 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7861154	2R_7861154_SNP [dm3] 2R_11973649_SNP [dm6]	C	T	3.896e^-4	0.868	SYNONYMOUS_CODING CG8290 INTRON CG8290
3L	2002059	3L_2002059_SNP [dm3] 3L_2002059_SNP [dm6]	T	C	3.898e^-4	0.868	INTERGENIC
2R	8590756	2R_8590756_SNP [dm3] 2R_12703251_SNP [dm6]	C	G	3.899e^-4	0.868	INTERGENIC
2L	10075140	2L_10075140_SNP [dm3] 2L_10075140_SNP [dm6]	A	G	3.901e^-4	0.868	INTRON CG44153
X	3530787	X_3530787_SNP [dm3] X_3636754_SNP [dm6]	C	T	3.906e^-4	0.868	INTRON AstA-R1
3R	9647091	3R_9647091_SNP [dm3] 3R_13821369_SNP [dm6]	A	G	3.908e^-4	0.868	INTERGENIC
X	3142641	X_3142641_SNP [dm3] X_3248608_SNP [dm6]	T	A	3.909e^-4	0.868	UTR_3_PRIME Pig1 UPSTREAM Sgs4 INTRON dnc
2L	4241052	2L_4241052_SNP [dm3] 2L_4241052_SNP [dm6]	G	A	3.919e^-4	0.868	UPSTREAM CR44058 & 1 other INTERGENIC
3L	11667110	3L_11667110_INS [dm3] 3L_11674010_INS [dm6]	T	GGAAC	3.921e^-4	0.868	INTRON CG32085
3R	26773016	3R_26773016_SNP [dm3] 3R_30947294_SNP [dm6]	T	A	3.923e^-4	0.868	INTERGENIC
3L	20959770	3L_20959770_SNP [dm3] 3L_20966670_SNP [dm6]	G	A	3.932e^-4	0.868	SYNONYMOUS_CODING CG12983 DOWNSTREAM CG33287
X	16874951	X_16874951_SNP [dm3] X_16980918_SNP [dm6]	T	G	3.934e^-4	0.868	INTRON CG45002
2L	9431918	2L_9431918_SNP [dm3] 2L_9431918_SNP [dm6]	T	C	3.936e^-4	0.868	UPSTREAM FucTB INTRON scat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	17591309	2L_17591309_SNP [dm3] 2L_17591309_SNP [dm6]	A	G	3.941e^-4	0.868	UPSTREAM Sytalpha DOWNSTREAM CG6870 & 1 other INTERGENIC
2R	9013649	2R_9013649_SNP [dm3] 2R_13126144_SNP [dm6]	G	T	3.941e^-4	0.868	DOWNSTREAM CG13325 INTERGENIC
3L	2595336	3L_2595336_SNP [dm3] 3L_2595336_SNP [dm6]	G	A	3.941e^-4	0.868	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182	TF binding site mE1_TFBS_cad
3L	15169601	3L_15169601_SNP [dm3] 3L_15176501_SNP [dm6]	G	T	3.951e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15413482	3R_15413482_DEL [dm3] 3R_19587760_DEL [dm6]	ACA	A	3.951e^-4	0.868	INTRON Dys
3R	974014	3R_974014_SNP [dm3] 3R_5148292_SNP [dm6]	G	A	3.953e^-4	0.868	INTERGENIC
2L	4917468	2L_4917468_SNP [dm3] 2L_4917468_SNP [dm6]	G	A	3.958e^-4	0.868	INTRON hoe1
2R	15687242	2R_15687242_SNP [dm3] 2R_19799737_SNP [dm6]	T	C	3.958e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11669888	3L_11669888_SNP [dm3] 3L_11676788_SNP [dm6]	C	T	3.963e^-4	0.868	INTRON CG32085
X	17896759	X_17896759_SNP [dm3] X_18002726_SNP [dm6]	A	G	3.967e^-4	0.868	INTRON Sh
3R	1015556	3R_1015556_SNP [dm3] 3R_5189834_SNP [dm6]	C	A	3.969e^-4	0.868	INTRON cno
X	5258697	X_5258697_SNP [dm3] X_5364664_SNP [dm6]	G	A	3.969e^-4	0.868	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
X	5258689	X_5258689_SNP [dm3] X_5364656_SNP [dm6]	T	C	3.970e^-4	0.868	UPSTREAM SK INTRON SK	TF binding site BDTNP1_TFBS_dl
3L	11836060	3L_11836060_SNP [dm3] 3L_11842960_SNP [dm6]	C	T	3.971e^-4	0.868	INTERGENIC
2L	18982430	2L_18982430_SNP [dm3] 2L_18982430_SNP [dm6]	A	C	3.988e^-4	0.868	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17897191	X_17897191_SNP [dm3] X_18003158_SNP [dm6]	A	G	4.000e^-4	0.868	INTRON Sh
X	10345129	X_10345129_SNP [dm3] X_10451096_SNP [dm6]	C	T	4.007e^-4	0.868	INTRON CG32683
3L	17574361	3L_17574361_SNP [dm3] 3L_17581261_SNP [dm6]	C	T	4.012e^-4	0.868	INTRON Eip74EF
3L	1543202	3L_1543202_SNP [dm3] 3L_1543202_SNP [dm6]	C	G	4.017e^-4	0.868	SPLICE_SITE_REGION CG7852 INTRON CG7852
2R	13198675	2R_13198675_SNP [dm3] 2R_17311170_SNP [dm6]	T	G	4.021e^-4	0.868	INTRON mbl
2L	1784087	2L_1784087_SNP [dm3] 2L_1784087_SNP [dm6]	A	T	4.022e^-4	0.868	NON_SYNONYMOUS_CODING Gr22e	TF binding site mE1_TFBS_cad
2R	9738042	2R_9738042_SNP [dm3] 2R_13850537_SNP [dm6]	A	T	4.026e^-4	0.868	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	3254514	3R_3254514_SNP [dm3] 3R_7428792_SNP [dm6]	C	T	4.028e^-4	0.868	INTERGENIC
3R	10097042	3R_10097042_SNP [dm3] 3R_14271320_SNP [dm6]	G	A	4.035e^-4	0.868	SYNONYMOUS_CODING trx	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8449605	3L_8449605_SNP [dm3] 3L_8456505_SNP [dm6]	T	C	4.043e^-4	0.868	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	9506516	X_9506516_SNP [dm3] X_9612483_SNP [dm6]	C	T	4.044e^-4	0.868	INTRON CG42797	TF binding site mE1_TFBS_cad
3R	11475046	3R_11475046_SNP [dm3] 3R_15649324_SNP [dm6]	T	C	4.046e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	6457708	3R_6457708_SNP [dm3] 3R_10631986_SNP [dm6]	A	T	4.047e^-4	0.868	INTRON hth	TF binding site mE1_TFBS_cad
2L	8420729	2L_8420729_SNP [dm3] 2L_8420729_SNP [dm6]	A	G	4.055e^-4	0.868	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7022212	2R_7022212_SNP [dm3] 2R_11134707_SNP [dm6]	G	A	4.063e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	14702089	X_14702089_DEL [dm3] X_14808056_DEL [dm6]	TTT	T	4.077e^-4	0.868	INTRON rut
3L	8232151	3L_8232151_INS [dm3] 3L_8239051_INS [dm6]	T	TGTT	4.077e^-4	0.868	INTRON CG7213 & 1 other
2L	14174299	2L_14174299_SNP [dm3] 2L_14174299_SNP [dm6]	G	A	4.078e^-4	0.868	INTRON CG43333
X	9182815	X_9182815_SNP [dm3] X_9288782_SNP [dm6]	T	G	4.098e^-4	0.868	INTRON lz
3L	15021018	3L_15021018_SNP [dm3] 3L_15027918_SNP [dm6]	T	A	4.107e^-4	0.868	INTRON Sytbeta
2L	1822536	2L_1822536_SNP [dm3] 2L_1822536_SNP [dm6]	C	G	4.111e^-4	0.868	SYNONYMOUS_CODING CG31933
2L	2383132	2L_2383132_SNP [dm3] 2L_2383132_SNP [dm6]	G	T	4.113e^-4	0.868	UPSTREAM CG9870 DOWNSTREAM Eogt INTERGENIC
3R	1016008	3R_1016008_SNP [dm3] 3R_5190286_SNP [dm6]	T	A	4.129e^-4	0.868	INTRON cno
3R	25785266	3R_25785266_SNP [dm3] 3R_29959544_SNP [dm6]	G	A	4.130e^-4	0.868	INTRON TkR99D
2L	19360749	2L_19360749_SNP [dm3] 2L_19360749_SNP [dm6]	G	T	4.130e^-4	0.868	INTRON dnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2597646	3L_2597646_SNP [dm3] 3L_2597646_SNP [dm6]	A	C	4.144e^-4	0.868	NON_SYNONYMOUS_CODING CG12182 DOWNSTREAM CG16984	TF binding site mE1_TFBS_sens
2L	5765611	2L_5765611_SNP [dm3] 2L_5765611_SNP [dm6]	C	A	4.149e^-4	0.868	INTRON obst-E
2R	14373819	2R_14373819_SNP [dm3] 2R_18486314_SNP [dm6]	C	A	4.150e^-4	0.868	INTRON CG30116
3R	7824414	3R_7824414_SNP [dm3] 3R_11998692_SNP [dm6]	A	G	4.152e^-4	0.868	UPSTREAM Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6220913	2R_6220913_SNP [dm3] 2R_10333408_SNP [dm6]	A	T	4.167e^-4	0.868	INTRON CG42732
X	4841614	X_4841614_SNP [dm3] X_4947581_SNP [dm6]	G	T	4.174e^-4	0.868	INTRON Ptp4E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	17221588	X_17221588_SNP [dm3] X_17327555_SNP [dm6]	G	T	4.187e^-4	0.868	INTERGENIC
2R	6142442	2R_6142442_SNP [dm3] 2R_10254937_SNP [dm6]	G	A	4.201e^-4	0.868	UTR_3_PRIME CG12913
2R	13841363	2R_13841363_SNP [dm3] 2R_17953858_SNP [dm6]	T	C	4.214e^-4	0.868	UPSTREAM CR44418 INTERGENIC
3L	2815109	3L_2815109_SNP [dm3] 3L_2815109_SNP [dm6]	A	G	4.218e^-4	0.868	INTRON CG43444
3R	12235759	3R_12235759_SNP [dm3] 3R_16410037_SNP [dm6]	C	A	4.218e^-4	0.868	INTERGENIC
X	20706295	X_20706295_SNP [dm3] X_20835268_SNP [dm6]	A	G	4.220e^-4	0.868	INTRON shakB
2R	3531878	2R_3531878_SNP [dm3] 2R_7644373_SNP [dm6]	G	T	4.221e^-4	0.868	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
3L	15168822	3L_15168822_DEL [dm3] 3L_15175722_DEL [dm6]	CC	C	4.223e^-4	0.868	INTERGENIC
3L	1040066	3L_1040066_SNP [dm3] 3L_1040066_SNP [dm6]	A	G	4.224e^-4	0.868	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19773802	X_19773802_DEL [dm3] X_19879769_DEL [dm6]	AA	A	4.224e^-4	0.868	INTRON Hers
3R	9645488	3R_9645488_SNP [dm3] 3R_13819766_SNP [dm6]	C	G	4.234e^-4	0.868	INTERGENIC
X	15351601	X_15351601_SNP [dm3] X_15457568_SNP [dm6]	T	C	4.243e^-4	0.868	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_chinmo
X	21808525	X_21808525_SNP [dm3] X_22406690_SNP [dm6]	G	A	4.248e^-4	0.868	INTERGENIC
3R	26410576	3R_26410576_SNP [dm3] 3R_30584854_SNP [dm6]	T	G	4.257e^-4	0.868	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1697198	3L_1697198_SNP [dm3] 3L_1697198_SNP [dm6]	A	G	4.260e^-4	0.868	DOWNSTREAM CG12011 INTRON CG7991
X	13588811	X_13588811_SNP [dm3] X_13694778_SNP [dm6]	T	C	4.263e^-4	0.868	INTRON CG9940 & 1 other
3R	10125953	3R_10125953_SNP [dm3] 3R_14300231_SNP [dm6]	A	T	4.267e^-4	0.868	INTRON CG12207	TF binding site mE1_TFBS_cad
3R	5695237	3R_5695237_SNP [dm3] 3R_9869515_SNP [dm6]	A	T	4.267e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	19286400	2L_19286400_SNP [dm3] 2L_19286400_SNP [dm6]	G	T	4.272e^-4	0.868	INTERGENIC
3L	8503218	3L_8503218_SNP [dm3] 3L_8510118_SNP [dm6]	A	C	4.275e^-4	0.868	NON_SYNONYMOUS_CODING CG6745 UPSTREAM ZC3H3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9595996	3R_9595996_SNP [dm3] 3R_13770274_SNP [dm6]	A	G	4.278e^-4	0.868	INTRON Cht5	insulator Insulator_Class_II.mE01
3L	9552871	3L_9552871_SNP [dm3] 3L_9559771_SNP [dm6]	G	A	4.295e^-4	0.868	INTRON CG42673
X	16964875	X_16964875_SNP [dm3] X_17070842_SNP [dm6]	T	C	4.301e^-4	0.868	SYNONYMOUS_CODING CG8949	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3174703	X_3174703_SNP [dm3] X_3280670_SNP [dm6]	T	C	4.301e^-4	0.868	SYNONYMOUS_CODING dnc UTR_5_PRIME dnc INTRON dnc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13807235	2R_13807235_SNP [dm3] 2R_17919730_SNP [dm6]	C	T	4.302e^-4	0.868	INTRON Elk
2L	7141780	2L_7141780_SNP [dm3] 2L_7141780_SNP [dm6]	T	G	4.314e^-4	0.868	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4521456	3L_4521456_SNP [dm3] 3L_4521456_SNP [dm6]	T	G	4.314e^-4	0.868	INTRON Tie
3L	11672080	3L_11672080_SNP [dm3] 3L_11678980_SNP [dm6]	G	T	4.315e^-4	0.868	INTRON CG32085
3R	22618935	3R_22618935_SNP [dm3] 3R_26793213_SNP [dm6]	A	G	4.322e^-4	0.868	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10556460	2L_10556460_SNP [dm3] 2L_10556460_SNP [dm6]	G	A	4.325e^-4	0.868	INTRON Trim9
X	17222062	X_17222062_SNP [dm3] X_17328029_SNP [dm6]	A	C	4.336e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1006620	2L_1006620_SNP [dm3] 2L_1006620_SNP [dm6]	T	C	4.338e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	19415361	3R_19415361_SNP [dm3] 3R_23589639_SNP [dm6]	C	G	4.341e^-4	0.868	SYNONYMOUS_CODING CG10182 DOWNSTREAM CG33337
3R	18765647	3R_18765647_SNP [dm3] 3R_22939925_SNP [dm6]	A	G	4.346e^-4	0.868	INTRON klg
X	1532236	X_1532236_SNP [dm3] X_1638203_SNP [dm6]	C	A	4.347e^-4	0.868	INTRON Mur2B & 1 other
2L	1874901	2L_1874901_SNP [dm3] 2L_1874901_SNP [dm6]	T	A	4.351e^-4	0.868	INTRON CG31663
3R	26581994	3R_26581994_SNP [dm3] 3R_30756272_SNP [dm6]	T	A	4.352e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18808387	2R_18808387_SNP [dm3] 2R_22920864_SNP [dm6]	A	G	4.353e^-4	0.868	SYNONYMOUS_CODING Nup214
3R	17575630	3R_17575630_SNP [dm3] 3R_21749908_SNP [dm6]	T	C	4.354e^-4	0.868	UPSTREAM CG31233 DOWNSTREAM CG31343 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16714408	2L_16714408_SNP [dm3] 2L_16714408_SNP [dm6]	C	T	4.362e^-4	0.868	INTRON CG31808
2L	6597580	2L_6597580_SNP [dm3] 2L_6597580_SNP [dm6]	G	T	4.364e^-4	0.868	INTRON CG11319
X	17896722	X_17896722_SNP [dm3] X_18002689_SNP [dm6]	A	G	4.374e^-4	0.868	INTRON Sh
X	4141940	X_4141940_SNP [dm3] X_4247907_SNP [dm6]	G	A	4.377e^-4	0.868	UPSTREAM CG43135 DOWNSTREAM CG43134 INTERGENIC
3L	1454647	3L_1454647_SNP [dm3] 3L_1454647_SNP [dm6]	G	A	4.380e^-4	0.868	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	10345085	X_10345085_SNP [dm3] X_10451052_SNP [dm6]	C	A	4.381e^-4	0.868	INTRON CG32683
X	20748517	X_20748517_SNP [dm3] X_20877490_SNP [dm6]	C	G	4.381e^-4	0.868	INTRON shakB
3R	9598774	3R_9598774_SNP [dm3] 3R_13773052_SNP [dm6]	C	A	4.390e^-4	0.868	INTRON CG9297
2R	9759941	2R_9759941_SNP [dm3] 2R_13872436_SNP [dm6]	G	C	4.397e^-4	0.868	NON_SYNONYMOUS_CODING shot	TF binding site mE1_TFBS_cad
X	6320117	X_6320117_SNP [dm3] X_6426084_SNP [dm6]	A	G	4.397e^-4	0.868	INTRON CG42340
X	2390974	X_2390974_SNP [dm3] X_2496941_SNP [dm6]	A	C	4.402e^-4	0.868	INTRON trol	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22225903	X_22225903_SNP [dm3] X_22824067_SNP [dm6]	A	T	4.412e^-4	0.868	DOWNSTREAM fog INTERGENIC	transposable element FlyBase
3L	11949891	3L_11949891_SNP [dm3] 3L_11956791_SNP [dm6]	T	C	4.414e^-4	0.868	UTR_3_PRIME CG11570 DOWNSTREAM CG7248
3L	22751578	3L_22751578_SNP [dm3] 3L_22758478_SNP [dm6]	G	A	4.416e^-4	0.868	INTRON SPoCk
2L	13954792	2L_13954792_SNP [dm3] 2L_13954792_SNP [dm6]	T	A	4.425e^-4	0.868	SYNONYMOUS_CODING Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13608555	X_13608555_SNP [dm3] X_13714522_SNP [dm6]	T	C	4.426e^-4	0.868	DOWNSTREAM NnaD INTRON CG9940 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23907213	3R_23907213_SNP [dm3] 3R_28081491_SNP [dm6]	A	G	4.436e^-4	0.868	INTRON CG34362
3L	15183103	3L_15183103_SNP [dm3] 3L_15190003_SNP [dm6]	C	T	4.436e^-4	0.868	UPSTREAM CR44562 INTERGENIC
X	3530710	X_3530710_SNP [dm3] X_3636677_SNP [dm6]	C	G	4.440e^-4	0.868	INTRON AstA-R1
2L	9551413	2L_9551413_SNP [dm3] 2L_9551413_SNP [dm6]	G	A	4.441e^-4	0.868	UPSTREAM jp INTRON jp
2L	9598213	2L_9598213_SNP [dm3] 2L_9598213_SNP [dm6]	A	C	4.444e^-4	0.868	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	20909072	2L_20909072_SNP [dm3] 2L_20909072_SNP [dm6]	A	G	4.449e^-4	0.868	INTRON sky & 1 other
3R	9691751	3R_9691751_SNP [dm3] 3R_13866029_SNP [dm6]	G	T	4.450e^-4	0.868	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	630491	3L_630491_SNP [dm3] 3L_630491_SNP [dm6]	C	A	4.463e^-4	0.868	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10095186	3L_10095186_INS [dm3] 3L_10102086_INS [dm6]	A	AGCACAA	4.472e^-4	0.868	INTRON dpr6
2R	18893922	2R_18893922_SNP [dm3] 2R_23006399_SNP [dm6]	C	T	4.479e^-4	0.868	INTRON twi
X	3531761	X_3531761_SNP [dm3] X_3637728_SNP [dm6]	A	T	4.485e^-4	0.868	INTRON AstA-R1
3L	7990091	3L_7990091_SNP [dm3] 3L_7996991_SNP [dm6]	G	T	4.489e^-4	0.868	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3643182	3L_3643182_DEL [dm3] 3L_3643182_DEL [dm6]	GCAGCT	G	4.492e^-4	0.868	INTRON dar1
3R	22246639	3R_22246639_SNP [dm3] 3R_26420917_SNP [dm6]	C	T	4.496e^-4	0.868	INTERGENIC
X	10345595	X_10345595_SNP [dm3] X_10451562_SNP [dm6]	A	C	4.503e^-4	0.868	INTRON CG32683
X	15594799	X_15594799_SNP [dm3] X_15700766_SNP [dm6]	G	A	4.504e^-4	0.868	SYNONYMOUS_CODING CG9240 DOWNSTREAM CG8128 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	15933761	2R_15933761_SNP [dm3] 2R_20046256_SNP [dm6]	A	T	4.506e^-4	0.868	INTERGENIC
3L	3426699	3L_3426699_SNP [dm3] 3L_3426699_SNP [dm6]	T	C	4.512e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	17578434	X_17578434_SNP [dm3] X_17684401_SNP [dm6]	A	G	4.521e^-4	0.868	SPLICE_SITE_REGION chas INTRON chas
2L	1582939	2L_1582939_DEL [dm3] 2L_1582939_DEL [dm6]	AAGTCA	A	4.523e^-4	0.868	INTRON haf
3R	22786660	3R_22786660_SNP [dm3] 3R_26960938_SNP [dm6]	T	C	4.529e^-4	0.868	DOWNSTREAM Tsp97E INTERGENIC
3R	9898116	3R_9898116_SNP [dm3] 3R_14072394_SNP [dm6]	C	G	4.530e^-4	0.868	INTRON foxo
2R	7506702	2R_7506702_SNP [dm3] 2R_11619197_SNP [dm6]	A	G	4.536e^-4	0.868	UPSTREAM Egm DOWNSTREAM CG9005 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	8490663	3L_8490663_SNP [dm3] 3L_8497563_SNP [dm6]	T	G	4.536e^-4	0.868	INTRON CG43163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1483506	X_1483506_SNP [dm3] X_1589473_SNP [dm6]	C	T	4.539e^-4	0.868	INTRON br & 1 other
X	15594188	X_15594188_SNP [dm3] X_15700155_SNP [dm6]	A	T	4.542e^-4	0.868	DOWNSTREAM CG9240 & 1 other INTERGENIC
2L	20397470	2L_20397470_SNP [dm3] 2L_20397470_SNP [dm6]	G	A	4.546e^-4	0.868	INTRON CG10947	TF binding site mE1_TFBS_inv
X	3158647	X_3158647_SNP [dm3] X_3264614_SNP [dm6]	G	C	4.560e^-4	0.868	INTRON dnc
2R	9737983	2R_9737983_SNP [dm3] 2R_13850478_SNP [dm6]	C	A	4.560e^-4	0.868	NON_SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
2L	8188134	2L_8188134_DEL [dm3] 2L_8188134_DEL [dm6]	AG	A	4.562e^-4	0.868	INTRON Piezo
3L	760293	3L_760293_SNP [dm3] 3L_760293_SNP [dm6]	C	T	4.568e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	18327269	3R_18327269_SNP [dm3] 3R_22501547_SNP [dm6]	G	A	4.568e^-4	0.868	INTRON Octbeta1R	regulatory region REDfly_CRMs
2R	7362755	2R_7362755_SNP [dm3] 2R_11475250_SNP [dm6]	G	A	4.572e^-4	0.868	UTR_5_PRIME inv UPSTREAM inv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12237835	3L_12237835_DEL [dm3] 3L_12244735_DEL [dm6]	CAAGGAC	C	4.574e^-4	0.868	DOWNSTREAM CR43991 INTRON app
2R	6467692	2R_6467692_SNP [dm3] 2R_10580187_SNP [dm6]	T	A	4.583e^-4	0.868	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_HSA
3L	4503898	3L_4503898_SNP [dm3] 3L_4503898_SNP [dm6]	A	G	4.584e^-4	0.868	DOWNSTREAM NT1 INTRON NT1
3L	2758132	3L_2758132_SNP [dm3] 3L_2758132_SNP [dm6]	G	T	4.587e^-4	0.868	INTRON Mrtf	TF binding site BDTNP1_TFBS_twi
3L	838074	3L_838074_SNP [dm3] 3L_838074_SNP [dm6]	C	G	4.590e^-4	0.868	UTR_5_PRIME CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	17897205	X_17897205_INS [dm3] X_18003172_INS [dm6]	T	TAAAT	4.597e^-4	0.868	INTRON Sh
3L	2007580	3L_2007580_INS [dm3] 3L_2007580_INS [dm6]	T	TGTAATCAAGAACT...	4.601e^-4	0.868	INTERGENIC
X	19496114	X_19496114_MNP [dm3] X_19602081_MNP [dm6]	TTCAA	AAGCT	4.603e^-4	0.868	UPSTREAM CG14220 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	1793761	2L_1793761_SNP [dm3] 2L_1793761_SNP [dm6]	A	G	4.605e^-4	0.868	SYNONYMOUS_CODING Gr22a UPSTREAM Gr22b
2R	17760304	2R_17760304_SNP [dm3] 2R_21872799_SNP [dm6]	C	G	4.620e^-4	0.868	INTRON Fili	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	19371647	2L_19371647_SNP [dm3] 2L_19371647_SNP [dm6]	C	T	4.638e^-4	0.868	INTRON CG17349
3R	22687404	3R_22687404_SNP [dm3] 3R_26861682_SNP [dm6]	C	T	4.647e^-4	0.868	NON_SYNONYMOUS_CODING Lerp UPSTREAM mir-1012
X	14575758	X_14575758_SNP [dm3] X_14681725_SNP [dm6]	G	A	4.648e^-4	0.868	DOWNSTREAM CG5321 INTERGENIC
3R	27144140	3R_27144140_SNP [dm3] 3R_31318418_SNP [dm6]	C	G	4.649e^-4	0.868	INTRON CG34347
3L	838180	3L_838180_SNP [dm3] 3L_838180_SNP [dm6]	T	C	4.658e^-4	0.868	SYNONYMOUS_CODING CG13887 UPSTREAM CG13901	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3R	22073006	3R_22073006_SNP [dm3] 3R_26247284_SNP [dm6]	A	T	4.662e^-4	0.868	INTRON CR42745
3R	15158133	3R_15158133_SNP [dm3] 3R_19332411_SNP [dm6]	G	C	4.663e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	10561817	3L_10561817_SNP [dm3] 3L_10568717_SNP [dm6]	T	A	4.668e^-4	0.868	INTRON A2bp1
X	14824025	X_14824025_INS [dm3] X_14929992_INS [dm6]	A	AA	4.668e^-4	0.868	UTR_5_PRIME Flo2 UPSTREAM Flo2 INTRON Flo2
X	6158105	X_6158105_SNP [dm3] X_6264072_SNP [dm6]	A	T	4.668e^-4	0.868	INTRON schlank
X	3532391	X_3532391_SNP [dm3] X_3638358_SNP [dm6]	T	C	4.671e^-4	0.868	INTRON AstA-R1
2L	1432486	2L_1432486_SNP [dm3] 2L_1432486_SNP [dm6]	G	A	4.676e^-4	0.868	UPSTREAM snRNA:U3:22A INTERGENIC
2R	11184468	2R_11184468_SNP [dm3] 2R_15296963_SNP [dm6]	A	G	4.676e^-4	0.868	SYNONYMOUS_CODING CG8102 INTRON Trpm	TF binding site mE1_TFBS_cad
3R	1001377	3R_1001377_SNP [dm3] 3R_5175655_SNP [dm6]	T	G	4.678e^-4	0.868	NON_SYNONYMOUS_CODING cno UTR_3_PRIME cno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6354020	2R_6354020_SNP [dm3] 2R_10466515_SNP [dm6]	A	T	4.680e^-4	0.868	SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8896796	2R_8896796_SNP [dm3] 2R_13009291_SNP [dm6]	G	T	4.685e^-4	0.868	INTERGENIC
2R	3531894	2R_3531894_SNP [dm3] 2R_7644389_SNP [dm6]	G	T	4.687e^-4	0.868	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	6009533	2L_6009533_SNP [dm3] 2L_6009533_SNP [dm6]	C	T	4.689e^-4	0.868	SYNONYMOUS_CODING CG9098	TF binding site mE1_TFBS_chinmo
3L	1453340	3L_1453340_SNP [dm3] 3L_1453340_SNP [dm6]	G	T	4.691e^-4	0.868	INTRON Ptp61F
3R	6448520	3R_6448520_SNP [dm3] 3R_10622798_SNP [dm6]	T	G	4.691e^-4	0.868	INTRON hth	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12496619	X_12496619_SNP [dm3] X_12602586_SNP [dm6]	T	A	4.697e^-4	0.868	INTRON Sec16	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	6423030	3R_6423030_DEL [dm3] 3R_10597308_DEL [dm6]	AA	A	4.697e^-4	0.868	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	19916902	3L_19916902_SNP [dm3] 3L_19923802_SNP [dm6]	C	G	4.699e^-4	0.868	UTR_5_PRIME CG7770 UPSTREAM Su_z_12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	17576482	X_17576482_SNP [dm3] X_17682449_SNP [dm6]	C	G	4.709e^-4	0.868	UTR_5_PRIME chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14373748	2R_14373748_SNP [dm3] 2R_18486243_SNP [dm6]	C	G	4.709e^-4	0.868	INTRON CG30116
2L	8188139	2L_8188139_SNP [dm3] 2L_8188139_SNP [dm6]	C	A	4.710e^-4	0.868	INTRON Piezo
2L	16055215	2L_16055215_SNP [dm3] 2L_16055215_SNP [dm6]	G	A	4.712e^-4	0.868	INTRON beat-Ia
3R	9560715	3R_9560715_SNP [dm3] 3R_13734993_SNP [dm6]	G	A	4.714e^-4	0.868	UPSTREAM CG34383 INTRON CG34383
3L	15443874	3L_15443874_SNP [dm3] 3L_15450774_SNP [dm6]	T	G	4.716e^-4	0.868	INTERGENIC
2L	19387456	2L_19387456_SNP [dm3] 2L_19387456_SNP [dm6]	A	G	4.725e^-4	0.868	INTRON CG17549
2R	7834807	2R_7834807_INS [dm3] 2R_11947302_INS [dm6]	T	TT	4.729e^-4	0.868	INTRON CG13188
3R	926074	3R_926074_SNP [dm3] 3R_5100352_SNP [dm6]	A	C	4.731e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	974187	3R_974187_SNP [dm3] 3R_5148465_SNP [dm6]	T	A	4.734e^-4	0.868	INTERGENIC

By genomic position
Variant impact
Gene name

pc_Surv_MeHg_0_CAFF phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results