DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.416e^-22)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2279 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	2474864	X_2474864_SNP [dm3] X_2580831_SNP [dm6]	T	C	5.445e^-8	0.056	UPSTREAM CG13759 & 1 other INTERGENIC
X	2474861	X_2474861_INS [dm3] X_2580828_INS [dm6]	A	ACGTG	5.996e^-8	0.056	UPSTREAM CG13759 & 1 other INTERGENIC
X	2706208	X_2706208_DEL [dm3] X_2812175_DEL [dm6]	CAAT	C	1.819e^-7	0.085	INTRON kirre
X	2706213	X_2706213_SNP [dm3] X_2812180_SNP [dm6]	C	T	1.819e^-7	0.085	INTRON kirre
2L	10137758	2L_10137758_SNP [dm3] 2L_10137758_SNP [dm6]	T	A	2.781e^-7	0.096	INTRON CG44153
X	2474802	X_2474802_INS [dm3] X_2580769_INS [dm6]	A	ATGTA	3.181e^-7	0.096	UPSTREAM CG13759 & 1 other INTERGENIC
X	2477618	X_2477618_SNP [dm3] X_2583585_SNP [dm6]	C	G	4.213e^-7	0.096	SYNONYMOUS_CODING CG13759 DOWNSTREAM CG13760	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17365836	3R_17365836_SNP [dm3] 3R_21540114_SNP [dm6]	A	T	4.333e^-7	0.096	INTERGENIC
2R	9269114	2R_9269114_SNP [dm3] 2R_13381609_SNP [dm6]	T	G	4.592e^-7	0.096	INTERGENIC
2L	10137806	2L_10137806_SNP [dm3] 2L_10137806_SNP [dm6]	G	T	1.393e^-6	0.248	INTRON CG44153
2R	9269124	2R_9269124_DEL [dm3] 2R_13381619_DEL [dm6]	TG	T	1.452e^-6	0.248	INTERGENIC
2L	10137798	2L_10137798_SNP [dm3] 2L_10137798_SNP [dm6]	C	A	1.710e^-6	0.251	INTRON CG44153
3R	16051186	3R_16051186_SNP [dm3] 3R_20225464_SNP [dm6]	C	A	1.740e^-6	0.251	INTRON Nlg4
3R	26027516	3R_26027516_SNP [dm3] 3R_30201794_SNP [dm6]	A	T	1.907e^-6	0.256	INTRON CG9743	TF binding site mE1_TFBS_inv
3R	14656152	3R_14656152_SNP [dm3] 3R_18830430_SNP [dm6]	G	T	2.145e^-6	0.256	INTRON CG18208
2R	9269137	2R_9269137_SNP [dm3] 2R_13381632_SNP [dm6]	T	A	2.183e^-6	0.256	INTERGENIC
3L	11443063	3L_11443063_DEL [dm3] 3L_11449963_DEL [dm6]	TTACCCTCAACC...	T	2.527e^-6	0.263	INTERGENIC
2R	15870314	2R_15870314_SNP [dm3] 2R_19982809_SNP [dm6]	A	T	2.633e^-6	0.263	INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
X	6408199	X_6408199_SNP [dm3] X_6514166_SNP [dm6]	C	T	2.672e^-6	0.263	INTRON CG42340
X	5449728	X_5449728_SNP [dm3] X_5555695_SNP [dm6]	C	A	2.804e^-6	0.263	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
3R	26027492	3R_26027492_SNP [dm3] 3R_30201770_SNP [dm6]	T	A	3.116e^-6	0.266	INTRON CG9743	TF binding site mE1_TFBS_inv
3L	2393411	3L_2393411_SNP [dm3] 3L_2393411_SNP [dm6]	G	A	3.349e^-6	0.266	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2836985	2L_2836985_SNP [dm3] 2L_2836985_SNP [dm6]	G	A	3.437e^-6	0.266	INTRON CG3119
2L	17366277	2L_17366277_SNP [dm3] 2L_17366277_SNP [dm6]	G	A	3.634e^-6	0.266	INTERGENIC
3R	9734838	3R_9734838_SNP [dm3] 3R_13909116_SNP [dm6]	T	C	3.924e^-6	0.266	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	24205174	3R_24205174_SNP [dm3] 3R_28379452_SNP [dm6]	A	G	3.954e^-6	0.266	INTERGENIC
2R	9269117	2R_9269117_DEL [dm3] 2R_13381612_DEL [dm6]	AAAGA	TCT	4.003e^-6	0.266	INTERGENIC
2L	5160237	2L_5160237_SNP [dm3] 2L_5160237_SNP [dm6]	C	G	4.270e^-6	0.266	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6960668	2R_6960668_SNP [dm3] 2R_11073163_SNP [dm6]	C	T	4.470e^-6	0.266	INTRON luna	TF binding site mE1_TFBS_HSA
3R	16761488	3R_16761488_SNP [dm3] 3R_20935766_SNP [dm6]	T	A	4.549e^-6	0.266	INTRON CG31191
2L	6515306	2L_6515306_SNP [dm3] 2L_6515306_SNP [dm6]	T	A	4.645e^-6	0.266	INTRON CG31637
2R	9269138	2R_9269138_SNP [dm3] 2R_13381633_SNP [dm6]	T	C	4.670e^-6	0.266	INTERGENIC
3R	7529701	3R_7529701_SNP [dm3] 3R_11703979_SNP [dm6]	T	G	4.684e^-6	0.266	UPSTREAM I-t INTERGENIC
3R	24206117	3R_24206117_SNP [dm3] 3R_28380395_SNP [dm6]	T	G	4.882e^-6	0.266	INTERGENIC
X	2470586	X_2470586_SNP [dm3] X_2576553_SNP [dm6]	C	G	5.114e^-6	0.266	UTR_3_PRIME Pdfr INTRON Pdfr
X	2470664	X_2470664_SNP [dm3] X_2576631_SNP [dm6]	C	A	5.114e^-6	0.266	UTR_3_PRIME Pdfr INTRON Pdfr
3R	19446955	3R_19446955_INS [dm3] 3R_23621233_INS [dm6]	C	CCACC	5.334e^-6	0.27	INTRON CG31145
3R	14196902	3R_14196902_SNP [dm3] 3R_18371180_SNP [dm6]	A	G	5.621e^-6	0.274	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3421142	X_3421142_SNP [dm3] X_3527109_SNP [dm6]	T	A	5.700e^-6	0.274	INTRON CG32791
2R	9269128	2R_9269128_SNP [dm3] 2R_13381623_SNP [dm6]	A	T	6.002e^-6	0.277	INTERGENIC
3R	16677292	3R_16677292_SNP [dm3] 3R_20851570_SNP [dm6]	T	A	6.106e^-6	0.277	DOWNSTREAM Ir93a & 1 other INTERGENIC
3L	7533576	3L_7533576_SNP [dm3] 3L_7540476_SNP [dm6]	C	T	6.333e^-6	0.277	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf
X	2698884	X_2698884_SNP [dm3] X_2804851_SNP [dm6]	A	C	6.343e^-6	0.277	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	15852928	2R_15852928_SNP [dm3] 2R_19965423_SNP [dm6]	G	T	6.797e^-6	0.283	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	19601009	2L_19601009_SNP [dm3] 2L_19601009_SNP [dm6]	C	A	6.986e^-6	0.283	INTRON CR44978 & 1 other
2L	10487587	2L_10487587_SNP [dm3] 2L_10487587_SNP [dm6]	A	G	7.016e^-6	0.283	INTRON CG7456	TF binding site mE1_TFBS_inv
2L	5160239	2L_5160239_SNP [dm3] 2L_5160239_SNP [dm6]	A	G	7.098e^-6	0.283	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11924188	3L_11924188_SNP [dm3] 3L_11931088_SNP [dm6]	T	C	8.100e^-6	0.316	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16299765	2R_16299765_SNP [dm3] 2R_20412260_SNP [dm6]	T	C	8.676e^-6	0.328	INTERGENIC
3L	2158707	3L_2158707_SNP [dm3] 3L_2158707_SNP [dm6]	A	C	8.902e^-6	0.328	NON_SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9269202	2R_9269202_SNP [dm3] 2R_13381697_SNP [dm6]	G	A	8.906e^-6	0.328	INTERGENIC
2R	9269155	2R_9269155_SNP [dm3] 2R_13381650_SNP [dm6]	T	C	1.013e^-5	0.359	INTERGENIC
X	7670790	X_7670790_SNP [dm3] X_7776757_SNP [dm6]	G	C	1.051e^-5	0.359	INTERGENIC
X	13370179	X_13370179_SNP [dm3] X_13476146_SNP [dm6]	T	G	1.074e^-5	0.359	INTRON Neto
2L	9853018	2L_9853018_SNP [dm3] 2L_9853018_SNP [dm6]	T	C	1.079e^-5	0.359	INTRON nAChRalpha6
3L	13009371	3L_13009371_SNP [dm3] 3L_13016271_SNP [dm6]	T	G	1.091e^-5	0.359	UPSTREAM MICAL-like DOWNSTREAM mRpL20 INTRON CG11267	TF binding site mE1_TFBS_sens
3L	12056934	3L_12056934_SNP [dm3] 3L_12063834_SNP [dm6]	T	G	1.092e^-5	0.359	INTRON rols
2R	9803780	2R_9803780_SNP [dm3] 2R_13916275_SNP [dm6]	G	A	1.136e^-5	0.361	INTRON shot
2L	12368143	2L_12368143_SNP [dm3] 2L_12368143_SNP [dm6]	C	T	1.138e^-5	0.361	INTRON bru-2
2L	12368223	2L_12368223_SNP [dm3] 2L_12368223_SNP [dm6]	T	A	1.155e^-5	0.361	INTRON bru-2
2L	8150892	2L_8150892_SNP [dm3] 2L_8150892_SNP [dm6]	C	A	1.207e^-5	0.364	INTRON CG8552 & 1 other
3L	18364980	3L_18364980_SNP [dm3] 3L_18371880_SNP [dm6]	C	T	1.224e^-5	0.364	INTERGENIC
3R	16761878	3R_16761878_SNP [dm3] 3R_20936156_SNP [dm6]	T	C	1.238e^-5	0.364	INTRON CG31191	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14372394	3L_14372394_SNP [dm3] 3L_14379294_SNP [dm6]	C	T	1.243e^-5	0.364	INTERGENIC
3L	9824838	3L_9824838_SNP [dm3] 3L_9831738_SNP [dm6]	A	T	1.337e^-5	0.383	INTRON CG43897
3L	15881100	3L_15881100_SNP [dm3] 3L_15888000_SNP [dm6]	A	G	1.356e^-5	0.383	INTRON pHCl
2R	17810174	2R_17810174_SNP [dm3] 2R_21922669_SNP [dm6]	C	T	1.384e^-5	0.383	INTRON Fili
3R	16761336	3R_16761336_SNP [dm3] 3R_20935614_SNP [dm6]	T	C	1.388e^-5	0.383	INTRON CG31191
3R	16763347	3R_16763347_SNP [dm3] 3R_20937625_SNP [dm6]	T	C	1.506e^-5	0.392	INTRON CG31191
3L	3263234	3L_3263234_SNP [dm3] 3L_3263234_SNP [dm6]	T	C	1.524e^-5	0.392	INTRON ckd
2L	6083755	2L_6083755_SNP [dm3] 2L_6083755_SNP [dm6]	T	A	1.527e^-5	0.392	INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2R	14762500	2R_14762500_SNP [dm3] 2R_18874995_SNP [dm6]	A	C	1.548e^-5	0.392	INTERGENIC
3R	9738831	3R_9738831_SNP [dm3] 3R_13913109_SNP [dm6]	C	T	1.551e^-5	0.392	INTERGENIC	TF binding site mE1_TFBS_inv
2R	9269197	2R_9269197_SNP [dm3] 2R_13381692_SNP [dm6]	A	G	1.553e^-5	0.392	INTERGENIC
3L	14372390	3L_14372390_SNP [dm3] 3L_14379290_SNP [dm6]	T	A	1.567e^-5	0.392	INTERGENIC
2L	10145612	2L_10145612_SNP [dm3] 2L_10145612_SNP [dm6]	A	G	1.606e^-5	0.395	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
3L	12853276	3L_12853276_SNP [dm3] 3L_12860176_SNP [dm6]	G	A	1.652e^-5	0.395	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8957546	X_8957546_SNP [dm3] X_9063513_SNP [dm6]	A	T	1.662e^-5	0.395	INTRON CG15365
3L	13009752	3L_13009752_SNP [dm3] 3L_13016652_SNP [dm6]	T	C	1.664e^-5	0.395	SYNONYMOUS_CODING CG11267 DOWNSTREAM mRpL20	TF binding site mE1_TFBS_sens
3L	9106134	3L_9106134_INS [dm3] 3L_9113034_INS [dm6]	A	AGCTGAAGGA	1.715e^-5	0.401	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	9866032	2R_9866032_INS [dm3] 2R_13978527_INS [dm6]	C	CA	1.735e^-5	0.401	INTRON CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9738642	3R_9738642_SNP [dm3] 3R_13912920_SNP [dm6]	T	G	1.753e^-5	0.401	INTERGENIC	TF binding site mE1_TFBS_inv
3L	3538043	3L_3538043_SNP [dm3] 3L_3538043_SNP [dm6]	C	T	1.778e^-5	0.402	INTRON Eip63E
3L	22650620	3L_22650620_SNP [dm3] 3L_22657520_SNP [dm6]	G	C	1.816e^-5	0.405	INTERGENIC
3L	11440886	3L_11440886_SNP [dm3] 3L_11447786_SNP [dm6]	T	C	1.871e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18844569	3L_18844569_SNP [dm3] 3L_18851469_SNP [dm6]	G	T	1.877e^-5	0.408	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12853279	3L_12853279_SNP [dm3] 3L_12860179_SNP [dm6]	A	G	1.891e^-5	0.408	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25931725	3R_25931725_SNP [dm3] 3R_30106003_SNP [dm6]	T	C	1.954e^-5	0.414	INTRON sima
3R	1024171	3R_1024171_SNP [dm3] 3R_5198449_SNP [dm6]	T	G	1.966e^-5	0.414	UPSTREAM cno INTRON cno	TF binding site mE1_TFBS_HSA
3L	11268973	3L_11268973_SNP [dm3] 3L_11275873_SNP [dm6]	T	A	2.008e^-5	0.418	INTERGENIC
X	4161266	X_4161266_SNP [dm3] X_4267233_SNP [dm6]	T	A	2.031e^-5	0.419	DOWNSTREAM CG12691 INTERGENIC
2R	15038134	2R_15038134_SNP [dm3] 2R_19150629_SNP [dm6]	T	A	2.082e^-5	0.422	INTRON ena	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	16448530	3L_16448530_INS [dm3] 3L_16455430_INS [dm6]	A	AGTTT	2.103e^-5	0.422	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14569437	3L_14569437_SNP [dm3] 3L_14576337_SNP [dm6]	A	G	2.117e^-5	0.422	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19274845	3L_19274845_SNP [dm3] 3L_19281745_SNP [dm6]	G	A	2.184e^-5	0.429	UTR_3_PRIME Gbs-76A UPSTREAM CG14089 DOWNSTREAM Gbs-76A
2L	9446064	2L_9446064_SNP [dm3] 2L_9446064_SNP [dm6]	T	C	2.197e^-5	0.429	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	9866385	3L_9866385_INS [dm3] 3L_9873285_INS [dm6]	T	TGTTCCAAGATT...	2.274e^-5	0.433	INTERGENIC
3L	4709865	3L_4709865_SNP [dm3] 3L_4709865_SNP [dm6]	T	C	2.297e^-5	0.433	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4709870	3L_4709870_SNP [dm3] 3L_4709870_SNP [dm6]	A	C	2.297e^-5	0.433	UTR_5_PRIME CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12813263	2L_12813263_SNP [dm3] 2L_12813263_SNP [dm6]	C	A	2.326e^-5	0.433	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12474784	2R_12474784_SNP [dm3] 2R_16587279_SNP [dm6]	A	C	2.332e^-5	0.433	UTR_3_PRIME CG8311 DOWNSTREAM RpLP2	TF binding site mE1_TFBS_cad
3L	9824836	3L_9824836_SNP [dm3] 3L_9831736_SNP [dm6]	T	G	2.373e^-5	0.435	INTRON CG43897
3R	14196891	3R_14196891_SNP [dm3] 3R_18371169_SNP [dm6]	T	G	2.388e^-5	0.435	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	12910742	X_12910742_SNP [dm3] X_13016709_SNP [dm6]	T	A	2.532e^-5	0.457	INTRON rad
4	987547	4_987547_SNP [dm3] 4_966921_SNP [dm6]	G	T	2.561e^-5	0.457	INTRON fuss
3L	11924175	3L_11924175_DEL [dm3] 3L_11931075_DEL [dm6]	TT	T	2.616e^-5	0.463	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	16677244	3R_16677244_SNP [dm3] 3R_20851522_SNP [dm6]	A	C	2.695e^-5	0.463	DOWNSTREAM Ir93a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	16677429	3R_16677429_DEL [dm3] 3R_20851707_DEL [dm6]	CTC	C	2.695e^-5	0.463	UTR_3_PRIME Ir93a DOWNSTREAM Ir93a & 1 other INTRAGENIC Ir93a INTERGENIC
3R	3901249	3R_3901249_SNP [dm3] 3R_8075527_SNP [dm6]	G	A	2.720e^-5	0.463	UPSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3R	2307244	3R_2307244_DEL [dm3] 3R_6481522_DEL [dm6]	AGTATTTGA	CAAC	2.726e^-5	0.463	INTRON CG15186
3L	12851997	3L_12851997_SNP [dm3] 3L_12858897_SNP [dm6]	C	A	2.758e^-5	0.463	NON_SYNONYMOUS_CODING CG32107
3R	16677242	3R_16677242_SNP [dm3] 3R_20851520_SNP [dm6]	G	A	2.762e^-5	0.463	DOWNSTREAM Ir93a & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25795598	3R_25795598_SNP [dm3] 3R_29969876_SNP [dm6]	C	G	2.811e^-5	0.464	UPSTREAM TkR99D INTERGENIC
3R	24666836	3R_24666836_SNP [dm3] 3R_28841114_SNP [dm6]	A	G	2.822e^-5	0.464	INTRON Apc
2L	13291983	2L_13291983_SNP [dm3] 2L_13291983_SNP [dm6]	C	T	2.870e^-5	0.468	INTRON CG31729
X	16155306	X_16155306_SNP [dm3] X_16261273_SNP [dm6]	T	C	2.985e^-5	0.475	INTERGENIC
3L	16448501	3L_16448501_SNP [dm3] 3L_16455401_SNP [dm6]	T	A	2.990e^-5	0.475	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13440131	X_13440131_SNP [dm3] X_13546098_SNP [dm6]	A	G	2.997e^-5	0.475	INTERGENIC
3L	14569458	3L_14569458_SNP [dm3] 3L_14576358_SNP [dm6]	A	G	3.011e^-5	0.475	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16677289	3R_16677289_SNP [dm3] 3R_20851567_SNP [dm6]	C	T	3.073e^-5	0.477	DOWNSTREAM Ir93a & 1 other INTERGENIC
2L	2630464	2L_2630464_SNP [dm3] 2L_2630464_SNP [dm6]	T	C	3.076e^-5	0.477	INTERGENIC
2L	7620260	2L_7620260_SNP [dm3] 2L_7620260_SNP [dm6]	T	A	3.114e^-5	0.479	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10209176	2R_10209176_SNP [dm3] 2R_14321671_SNP [dm6]	G	A	3.182e^-5	0.482	INTRON Shroom
2R	18938776	2R_18938776_SNP [dm3] 2R_23051253_SNP [dm6]	C	G	3.232e^-5	0.482	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	14955141	2R_14955141_SNP [dm3] 2R_19067636_SNP [dm6]	A	G	3.235e^-5	0.482	INTRON 5-HT1A
3L	9910603	3L_9910603_SNP [dm3] 3L_9917503_SNP [dm6]	A	G	3.237e^-5	0.482	INTRON CG34356
X	4287737	X_4287737_SNP [dm3] X_4393704_SNP [dm6]	T	C	3.301e^-5	0.485	INTRON CR32773
X	2540756	X_2540756_SNP [dm3] X_2646723_SNP [dm6]	C	G	3.341e^-5	0.485	UTR_5_PRIME sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24401316	3R_24401316_SNP [dm3] 3R_28575594_SNP [dm6]	T	G	3.345e^-5	0.485	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_sens
2R	17742087	2R_17742087_SNP [dm3] 2R_21854582_SNP [dm6]	C	A	3.359e^-5	0.485	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	2446238	X_2446238_SNP [dm3] X_2552205_SNP [dm6]	C	T	3.484e^-5	0.498	UPSTREAM Pdfr INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	10212668	2R_10212668_SNP [dm3] 2R_14325163_SNP [dm6]	T	C	3.504e^-5	0.498	INTRON Shroom
2L	5160017	2L_5160017_SNP [dm3] 2L_5160017_SNP [dm6]	G	T	3.540e^-5	0.499	SYNONYMOUS_CODING Msp300 INTRON Msp300
2L	10076658	2L_10076658_SNP [dm3] 2L_10076658_SNP [dm6]	G	T	3.589e^-5	0.502	INTRON CG44153	TF binding site mE1_TFBS_cad
X	6408241	X_6408241_SNP [dm3] X_6514208_SNP [dm6]	A	G	3.689e^-5	0.51	INTRON CG42340
2L	11757717	2L_11757717_SNP [dm3] 2L_11757717_SNP [dm6]	T	C	3.697e^-5	0.51	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15880687	2R_15880687_INS [dm3] 2R_19993182_INS [dm6]	T	TCAT	3.738e^-5	0.512	INTERGENIC
2R	4656348	2R_4656348_SNP [dm3] 2R_8768843_SNP [dm6]	A	C	3.798e^-5	0.516	UPSTREAM CR44278 INTERGENIC
3R	14196623	3R_14196623_SNP [dm3] 3R_18370901_SNP [dm6]	A	G	3.908e^-5	0.527	INTRON gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10784214	3L_10784214_SNP [dm3] 3L_10791114_SNP [dm6]	T	G	3.940e^-5	0.527	INTERGENIC
X	6408227	X_6408227_SNP [dm3] X_6514194_SNP [dm6]	C	T	3.960e^-5	0.527	INTRON CG42340
2L	15175093	2L_15175093_SNP [dm3] 2L_15175093_SNP [dm6]	C	T	4.037e^-5	0.527	INTRON CG4168
X	8071641	X_8071641_SNP [dm3] X_8177608_SNP [dm6]	T	C	4.051e^-5	0.527	UPSTREAM slpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3L	10347013	3L_10347013_SNP [dm3] 3L_10353913_SNP [dm6]	T	A	4.058e^-5	0.527	INTRON CR44327
2R	19102647	2R_19102647_SNP [dm3] 2R_23215124_SNP [dm6]	C	A	4.077e^-5	0.527	INTERGENIC
X	6408274	X_6408274_SNP [dm3] X_6514241_SNP [dm6]	C	A	4.102e^-5	0.527	INTRON CG42340
2R	9269171	2R_9269171_SNP [dm3] 2R_13381666_SNP [dm6]	A	T	4.135e^-5	0.528	INTERGENIC
2R	14428255	2R_14428255_SNP [dm3] 2R_18540750_SNP [dm6]	G	A	4.200e^-5	0.529	INTRON Rgk2	TF binding site mE1_TFBS_chinmo
2L	10144951	2L_10144951_SNP [dm3] 2L_10144951_SNP [dm6]	C	A	4.225e^-5	0.529	UTR_5_PRIME CG4839 INTRON CG44153
2L	10487592	2L_10487592_SNP [dm3] 2L_10487592_SNP [dm6]	G	A	4.250e^-5	0.529	INTRON CG7456	TF binding site mE1_TFBS_inv
3L	1372029	3L_1372029_SNP [dm3] 3L_1372029_SNP [dm6]	T	C	4.285e^-5	0.529	INTRON Ptp61F & 1 other
3L	16448524	3L_16448524_SNP [dm3] 3L_16455424_SNP [dm6]	C	A	4.287e^-5	0.529	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16403012	2L_16403012_SNP [dm3] 2L_16403012_SNP [dm6]	C	A	4.350e^-5	0.53	INTRON CG5888
2L	16403201	2L_16403201_SNP [dm3] 2L_16403201_SNP [dm6]	A	G	4.350e^-5	0.53	INTRON CG5888
2L	3988429	2L_3988429_SNP [dm3] 2L_3988429_SNP [dm6]	C	T	4.442e^-5	0.537	INTRON fred
3L	13307763	3L_13307763_DEL [dm3] 3L_13314663_DEL [dm6]	TAGCGCTCAAGGGTTAAGCT...	T	4.531e^-5	0.54	INTERGENIC
3L	11178919	3L_11178919_SNP [dm3] 3L_11185819_SNP [dm6]	T	C	4.537e^-5	0.54	INTRON GlcAT-P
X	5918312	X_5918312_SNP [dm3] X_6024279_SNP [dm6]	T	C	4.551e^-5	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_D mE1_TFBS_HSA
X	13968673	X_13968673_DEL [dm3] X_14074640_DEL [dm6]	ACGGCGATTCAAGA...	A	4.581e^-5	0.54	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	3421091	X_3421091_SNP [dm3] X_3527058_SNP [dm6]	G	A	4.644e^-5	0.544	INTRON CG32791
X	20517983	X_20517983_SNP [dm3] X_20646956_SNP [dm6]	A	T	4.716e^-5	0.546	INTERGENIC
3L	10932506	3L_10932506_SNP [dm3] 3L_10939406_SNP [dm6]	A	C	4.749e^-5	0.546	INTERGENIC
2L	12368159	2L_12368159_INS [dm3] 2L_12368159_INS [dm6]	G	GCCTACTAAAATCACAAAGT...	4.757e^-5	0.546	INTRON bru-2
3L	9733963	3L_9733963_SNP [dm3] 3L_9740863_SNP [dm6]	T	A	4.775e^-5	0.546	UPSTREAM CR44348 INTRON CG42268
2L	10552102	2L_10552102_SNP [dm3] 2L_10552102_SNP [dm6]	A	T	4.923e^-5	0.546	INTRON Trim9	TF binding site mE1_TFBS_cad
X	17333337	X_17333337_SNP [dm3] X_17439304_SNP [dm6]	T	G	4.993e^-5	0.546	INTRON CG12994
3L	8675181	3L_8675181_SNP [dm3] 3L_8682081_SNP [dm6]	G	A	4.994e^-5	0.546	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	20005082	X_20005082_SNP [dm3] X_20111049_SNP [dm6]	T	C	5.035e^-5	0.546	UPSTREAM karr INTERGENIC	transposable element FlyBase
3R	25930717	3R_25930717_INS [dm3] 3R_30104995_INS [dm6]	T	TGTATAAATAGT...	5.052e^-5	0.546	INTRON sima
3R	11007534	3R_11007534_SNP [dm3] 3R_15181812_SNP [dm6]	C	T	5.060e^-5	0.546	UPSTREAM Mf INTRON Gyc88E
X	13478742	X_13478742_SNP [dm3] X_13584709_SNP [dm6]	G	T	5.064e^-5	0.546	INTRON Tango13
2R	9269131	2R_9269131_SNP [dm3] 2R_13381626_SNP [dm6]	T	C	5.101e^-5	0.546	INTERGENIC
3R	26027420	3R_26027420_SNP [dm3] 3R_30201698_SNP [dm6]	G	A	5.122e^-5	0.546	INTRON CG9743	TF binding site mE1_TFBS_inv
3L	11227601	3L_11227601_SNP [dm3] 3L_11234501_SNP [dm6]	C	T	5.160e^-5	0.546	SYNONYMOUS_CODING Ir68a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14569441	3L_14569441_SNP [dm3] 3L_14576341_SNP [dm6]	G	T	5.185e^-5	0.546	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	15890818	2R_15890818_SNP [dm3] 2R_20003313_SNP [dm6]	C	T	5.206e^-5	0.546	DOWNSTREAM CG16898 INTERGENIC
3R	15253312	3R_15253312_SNP [dm3] 3R_19427590_SNP [dm6]	T	G	5.233e^-5	0.546	INTRON CG31221
X	13968695	X_13968695_INS [dm3] X_14074662_INS [dm6]	A	ACTG	5.247e^-5	0.546	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	4811376	X_4811376_SNP [dm3] X_4917343_SNP [dm6]	G	A	5.269e^-5	0.546	NON_SYNONYMOUS_CODING CG4041	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_inv
2R	16337611	2R_16337611_SNP [dm3] 2R_20450106_SNP [dm6]	G	T	5.338e^-5	0.546	INTRON CG12484	TF binding site mE1_TFBS_inv
2R	10307166	2R_10307166_SNP [dm3] 2R_14419661_SNP [dm6]	G	C	5.343e^-5	0.546	UPSTREAM CG17386 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17741131	2R_17741131_SNP [dm3] 2R_21853626_SNP [dm6]	A	G	5.348e^-5	0.546	INTERGENIC	TF binding site mE1_TFBS_cad
X	14077525	X_14077525_SNP [dm3] X_14183492_SNP [dm6]	A	T	5.367e^-5	0.546	DOWNSTREAM CG11584 INTERGENIC
3R	11506117	3R_11506117_INS [dm3] 3R_15680395_INS [dm6]	A	ACA	5.387e^-5	0.546	INTRON pxb
3R	15253309	3R_15253309_SNP [dm3] 3R_19427587_SNP [dm6]	C	A	5.390e^-5	0.546	INTRON CG31221
X	12220280	X_12220280_SNP [dm3] X_12326247_SNP [dm6]	T	A	5.449e^-5	0.546	INTRON Ten-a
3L	19506344	3L_19506344_SNP [dm3] 3L_19513244_SNP [dm6]	C	T	5.525e^-5	0.546	INTERGENIC
3L	15889722	3L_15889722_SNP [dm3] 3L_15896622_SNP [dm6]	A	G	5.531e^-5	0.546	INTRON pHCl
2R	19128632	2R_19128632_DEL [dm3] 2R_23241109_DEL [dm6]	CTTTGCGGC	C	5.532e^-5	0.546	INTERGENIC
3L	15888330	3L_15888330_SNP [dm3] 3L_15895230_SNP [dm6]	T	C	5.537e^-5	0.546	INTRON pHCl
3L	24029578	3L_24029578_SNP [dm3] 3L_24036478_SNP [dm6]	A	G	5.607e^-5	0.546	DOWNSTREAM CG40045 INTERGENIC
2L	1840109	2L_1840109_SNP [dm3] 2L_1840109_SNP [dm6]	T	G	5.607e^-5	0.546	UPSTREAM CR44073 INTRON wry EXON CR44074	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10851996	2L_10851996_SNP [dm3] 2L_10851996_SNP [dm6]	G	A	5.621e^-5	0.546	UPSTREAM CG43129 INTRON CG43129
3L	7000813	3L_7000813_SNP [dm3] 3L_7007713_SNP [dm6]	C	A	5.697e^-5	0.551	INTRON Mp
3R	15253308	3R_15253308_SNP [dm3] 3R_19427586_SNP [dm6]	T	C	5.745e^-5	0.553	INTRON CG31221
3L	14726804	3L_14726804_SNP [dm3] 3L_14733704_SNP [dm6]	T	A	5.776e^-5	0.553	UPSTREAM CG13471 INTRON ome
2L	14385746	2L_14385746_SNP [dm3] 2L_14385746_SNP [dm6]	T	A	5.854e^-5	0.555	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3242594	2L_3242594_SNP [dm3] 2L_3242594_SNP [dm6]	G	T	5.873e^-5	0.555	INTERGENIC
X	14077531	X_14077531_SNP [dm3] X_14183498_SNP [dm6]	T	G	5.893e^-5	0.555	DOWNSTREAM CG11584 INTERGENIC
2L	9635801	2L_9635801_SNP [dm3] 2L_9635801_SNP [dm6]	C	A	6.127e^-5	0.568	INTRON Apoltp
X	18113865	X_18113865_SNP [dm3] X_18219832_SNP [dm6]	G	C	6.153e^-5	0.568	INTRON CG33639
3R	17825388	3R_17825388_SNP [dm3] 3R_21999666_SNP [dm6]	C	T	6.195e^-5	0.568	INTRON Eip93F
2R	13116722	2R_13116722_SNP [dm3] 2R_17229217_SNP [dm6]	A	G	6.201e^-5	0.568	INTRON mbl
2L	10604845	2L_10604845_SNP [dm3] 2L_10604845_SNP [dm6]	C	T	6.209e^-5	0.568	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
X	2439879	X_2439879_SNP [dm3] X_2545846_SNP [dm6]	G	A	6.214e^-5	0.568	UPSTREAM mir-4955 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	17200898	2L_17200898_SNP [dm3] 2L_17200898_SNP [dm6]	A	T	6.237e^-5	0.568	INTRON beat-IIIc	TF binding site mE1_TFBS_inv
3R	13386344	3R_13386344_SNP [dm3] 3R_17560622_SNP [dm6]	G	A	6.341e^-5	0.574	INTRON Hmx
X	12666180	X_12666180_SNP [dm3] X_12772147_SNP [dm6]	C	T	6.431e^-5	0.574	UTR_3_PRIME CG3812 & 1 other
2L	10486869	2L_10486869_SNP [dm3] 2L_10486869_SNP [dm6]	T	C	6.446e^-5	0.574	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
X	13478687	X_13478687_SNP [dm3] X_13584654_SNP [dm6]	G	C	6.454e^-5	0.574	INTRON Tango13
3R	5798597	3R_5798597_SNP [dm3] 3R_9972875_SNP [dm6]	T	A	6.490e^-5	0.574	INTRON Glut4EF
2R	17020158	2R_17020158_SNP [dm3] 2R_21132653_SNP [dm6]	C	A	6.502e^-5	0.574	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
3R	24693927	3R_24693927_SNP [dm3] 3R_28868205_SNP [dm6]	G	A	6.531e^-5	0.574	SYNONYMOUS_CODING spg	TF binding site mE1_TFBS_chinmo
2L	6314366	2L_6314366_SNP [dm3] 2L_6314366_SNP [dm6]	C	T	6.562e^-5	0.574	INTRON Ddr
3L	9106124	3L_9106124_DEL [dm3] 3L_9113024_DEL [dm6]	CCCTTTAA	C	6.617e^-5	0.574	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8988003	2L_8988003_SNP [dm3] 2L_8988003_SNP [dm6]	G	C	6.626e^-5	0.574	INTRON rost
3R	1026776	3R_1026776_SNP [dm3] 3R_5201054_SNP [dm6]	G	C	6.644e^-5	0.574	INTRON cno
3L	3535141	3L_3535141_SNP [dm3] 3L_3535141_SNP [dm6]	G	A	6.695e^-5	0.576	INTRON Eip63E
3R	3901162	3R_3901162_SNP [dm3] 3R_8075440_SNP [dm6]	C	A	6.725e^-5	0.576	UPSTREAM snoRNA:Me18S-G423 INTRON mAChR-B
3R	1027003	3R_1027003_SNP [dm3] 3R_5201281_SNP [dm6]	T	C	6.819e^-5	0.581	INTRON cno
3R	10261008	3R_10261008_SNP [dm3] 3R_14435286_SNP [dm6]	T	C	6.881e^-5	0.581	INTRON cv-c
3R	9733650	3R_9733650_SNP [dm3] 3R_13907928_SNP [dm6]	T	G	6.891e^-5	0.581	INTERGENIC
2L	16126955	2L_16126955_SNP [dm3] 2L_16126955_SNP [dm6]	G	C	6.934e^-5	0.581	INTERGENIC
2L	13515741	2L_13515741_SNP [dm3] 2L_13515741_SNP [dm6]	C	T	6.939e^-5	0.581	INTRON B4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	9157681	2L_9157681_SNP [dm3] 2L_9157681_SNP [dm6]	A	G	6.991e^-5	0.581	INTRON CG32982	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9088749	3L_9088749_SNP [dm3] 3L_9095649_SNP [dm6]	T	C	7.006e^-5	0.581	DOWNSTREAM CG32032 INTERGENIC
2L	10487784	2L_10487784_SNP [dm3] 2L_10487784_SNP [dm6]	T	C	7.089e^-5	0.586	SYNONYMOUS_CODING CG7456 UPSTREAM CG6144	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19485985	3R_19485985_SNP [dm3] 3R_23660263_SNP [dm6]	A	G	7.200e^-5	0.59	INTRON CG31145
3L	6617033	3L_6617033_SNP [dm3] 3L_6623933_SNP [dm6]	C	A	7.277e^-5	0.59	UPSTREAM GluRIA INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9446066	2L_9446066_SNP [dm3] 2L_9446066_SNP [dm6]	A	G	7.299e^-5	0.59	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	26409360	3R_26409360_SNP [dm3] 3R_30583638_SNP [dm6]	C	A	7.313e^-5	0.59	UTR_5_PRIME Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	12270206	2L_12270206_DEL [dm3] 2L_12270206_DEL [dm6]	AATTTATTCTA...	A	7.325e^-5	0.59	UPSTREAM aret INTRON aret
2L	14833767	2L_14833767_SNP [dm3] 2L_14833767_SNP [dm6]	A	C	7.344e^-5	0.59	INTERGENIC
2R	7638244	2R_7638244_SNP [dm3] 2R_11750739_SNP [dm6]	T	A	7.366e^-5	0.59	INTERGENIC
2R	14955111	2R_14955111_SNP [dm3] 2R_19067606_SNP [dm6]	G	A	7.449e^-5	0.593	INTRON 5-HT1A
2L	16126960	2L_16126960_SNP [dm3] 2L_16126960_SNP [dm6]	A	T	7.493e^-5	0.593	INTERGENIC
3L	22352739	3L_22352739_DEL [dm3] 3L_22359639_DEL [dm6]	TCCAGCT	C	7.521e^-5	0.593	INTRON Ten-m
2R	9269242	2R_9269242_SNP [dm3] 2R_13381737_SNP [dm6]	A	G	7.525e^-5	0.593	INTERGENIC
2L	1381370	2L_1381370_SNP [dm3] 2L_1381370_SNP [dm6]	T	A	7.583e^-5	0.594	UTR_3_PRIME lea UPSTREAM CR44898 EXON CR44897	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	14569271	3L_14569271_SNP [dm3] 3L_14576171_SNP [dm6]	T	G	7.605e^-5	0.594	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14865087	X_14865087_DEL [dm3] X_14971054_DEL [dm6]	AA	A	7.680e^-5	0.598	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	11268685	3L_11268685_SNP [dm3] 3L_11275585_SNP [dm6]	T	A	7.797e^-5	0.601	INTERGENIC
2R	13946850	2R_13946850_SNP [dm3] 2R_18059345_SNP [dm6]	A	G	7.815e^-5	0.601	UPSTREAM CR45314 INTERGENIC
3R	25930705	3R_25930705_DEL [dm3] 3R_30104983_DEL [dm6]	ATGGCAACGTA...	A	7.820e^-5	0.601	INTRON sima
X	22110962	X_22110962_DEL [dm3] X_22709126_DEL [dm6]	GG	G	7.911e^-5	0.605	INTRON CR44997	transposable element FlyBase
2L	7950065	2L_7950065_SNP [dm3] 2L_7950065_SNP [dm6]	A	T	7.935e^-5	0.605	INTRON Snoo
2L	3988425	2L_3988425_SNP [dm3] 2L_3988425_SNP [dm6]	T	C	7.980e^-5	0.605	INTRON fred
3R	25856125	3R_25856125_SNP [dm3] 3R_30030403_SNP [dm6]	T	A	8.007e^-5	0.605	INTRON Axn	TF binding site BDTNP1_TFBS_dl
3R	24229479	3R_24229479_SNP [dm3] 3R_28403757_SNP [dm6]	T	C	8.073e^-5	0.606	INTERGENIC
3L	12362652	3L_12362652_SNP [dm3] 3L_12369552_SNP [dm6]	C	A	8.088e^-5	0.606	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4637766	X_4637766_SNP [dm3] X_4743733_SNP [dm6]	C	A	8.115e^-5	0.606	INTERGENIC
3L	4710377	3L_4710377_DEL [dm3] 3L_4710377_DEL [dm6]	AG	A	8.136e^-5	0.606	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	257125	4_257125_SNP [dm3] 4_236499_SNP [dm6]	C	T	8.345e^-5	0.613	INTRON CG1674	TF binding site mE1_TFBS_kn
2L	10487631	2L_10487631_SNP [dm3] 2L_10487631_SNP [dm6]	G	T	8.408e^-5	0.613	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	7529814	3R_7529814_SNP [dm3] 3R_11704092_SNP [dm6]	G	C	8.415e^-5	0.613	NON_SYNONYMOUS_CODING I-t
X	4271818	X_4271818_SNP [dm3] X_4377785_SNP [dm6]	A	T	8.427e^-5	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	14570126	3L_14570126_SNP [dm3] 3L_14577026_SNP [dm6]	T	C	8.453e^-5	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26387922	3R_26387922_SNP [dm3] 3R_30562200_SNP [dm6]	C	T	8.491e^-5	0.613	UPSTREAM tmod INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	5620238	2L_5620238_SNP [dm3] 2L_5620238_SNP [dm6]	A	G	8.570e^-5	0.613	DOWNSTREAM Cyp6a16 EXON CR44796
2L	15907602	2L_15907602_SNP [dm3] 2L_15907602_SNP [dm6]	T	C	8.585e^-5	0.613	INTRON beat-Ib
4	1118342	4_1118342_SNP [dm3] 4_1097716_SNP [dm6]	C	T	8.622e^-5	0.613	UPSTREAM sv INTRON sv	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16760731	3R_16760731_SNP [dm3] 3R_20935009_SNP [dm6]	G	T	8.640e^-5	0.613	INTRON CG31191
2L	17713552	2L_17713552_SNP [dm3] 2L_17713552_SNP [dm6]	T	G	8.677e^-5	0.613	INTRON CadN
X	14076277	X_14076277_SNP [dm3] X_14182244_SNP [dm6]	T	A	8.884e^-5	0.613	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6058250	2L_6058250_SNP [dm3] 2L_6058250_SNP [dm6]	A	G	8.892e^-5	0.613	SPLICE_SITE_REGION CG13995 INTRON CG13995	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14569238	3L_14569238_SNP [dm3] 3L_14576138_SNP [dm6]	T	G	8.905e^-5	0.613	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	2515649	X_2515649_DEL [dm3] X_2621616_DEL [dm6]	ATGCCGACGA	A	8.912e^-5	0.613	DOWNSTREAM brv3	TF binding site mE1_TFBS_chinmo
3L	14570134	3L_14570134_SNP [dm3] 3L_14577034_SNP [dm6]	G	A	8.960e^-5	0.613	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18195874	3L_18195874_SNP [dm3] 3L_18202774_SNP [dm6]	T	C	8.982e^-5	0.613	SYNONYMOUS_CODING CG7320	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6050947	3R_6050947_SNP [dm3] 3R_10225225_SNP [dm6]	T	C	9.062e^-5	0.613	SYNONYMOUS_CODING CG34107 UPSTREAM CG42795 & 1 other
3R	17825359	3R_17825359_SNP [dm3] 3R_21999637_SNP [dm6]	T	C	9.079e^-5	0.613	INTRON Eip93F
3L	589743	3L_589743_SNP [dm3] 3L_589743_SNP [dm6]	C	T	9.087e^-5	0.613	UPSTREAM Kah INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15076132	2L_15076132_SNP [dm3] 2L_15076132_SNP [dm6]	A	C	9.095e^-5	0.613	INTRON CG15270
2R	13483829	2R_13483829_SNP [dm3] 2R_17596324_SNP [dm6]	T	G	9.097e^-5	0.613	SYNONYMOUS_CODING CG11423 INTRON lack
3L	20123996	3L_20123996_SNP [dm3] 3L_20130896_SNP [dm6]	C	A	9.124e^-5	0.613	NON_SYNONYMOUS_CODING obst-J INTRON gig	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18737385	2R_18737385_SNP [dm3] 2R_22849862_SNP [dm6]	T	C	9.182e^-5	0.613	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3L	18188837	3L_18188837_SNP [dm3] 3L_18195737_SNP [dm6]	T	A	9.210e^-5	0.613	UPSTREAM CR45234 INTERGENIC
2L	4890187	2L_4890187_SNP [dm3] 2L_4890187_SNP [dm6]	C	A	9.220e^-5	0.613	NON_SYNONYMOUS_CODING CG15625	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
4	1162773	4_1162773_SNP [dm3] 4_1142147_SNP [dm6]	C	T	9.255e^-5	0.613	INTRON CG32017
X	14077273	X_14077273_SNP [dm3] X_14183240_SNP [dm6]	T	C	9.316e^-5	0.613	UTR_3_PRIME CG11584
X	6323115	X_6323115_SNP [dm3] X_6429082_SNP [dm6]	T	G	9.318e^-5	0.613	INTRON CG42340
3L	3275450	3L_3275450_SNP [dm3] 3L_3275450_SNP [dm6]	T	A	9.334e^-5	0.613	INTRON CG14960
3L	3275467	3L_3275467_SNP [dm3] 3L_3275467_SNP [dm6]	C	T	9.334e^-5	0.613	INTRON CG14960
2L	4505507	2L_4505507_SNP [dm3] 2L_4505507_SNP [dm6]	G	A	9.339e^-5	0.613	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24200331	3R_24200331_SNP [dm3] 3R_28374609_SNP [dm6]	A	T	9.346e^-5	0.613	INTERGENIC
2L	7484924	2L_7484924_SNP [dm3] 2L_7484924_SNP [dm6]	G	C	9.353e^-5	0.613	INTRON Ziz
2L	4023666	2L_4023666_SNP [dm3] 2L_4023666_SNP [dm6]	G	A	9.563e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4414760	2R_4414760_SNP [dm3] 2R_8527255_SNP [dm6]	A	C	9.572e^-5	0.622	INTRON mtt
X	8466203	X_8466203_SNP [dm3] X_8572170_SNP [dm6]	T	G	9.643e^-5	0.622	SYNONYMOUS_CODING spirit	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16428821	3L_16428821_SNP [dm3] 3L_16435721_SNP [dm6]	A	G	9.684e^-5	0.622	INTRON CG33158 & 1 other
3R	991612	3R_991612_SNP [dm3] 3R_5165890_SNP [dm6]	G	A	9.684e^-5	0.622	UTR_5_PRIME dpr16 INTRON dpr16	TF binding site mE1_TFBS_chinmo
2R	15869375	2R_15869375_SNP [dm3] 2R_19981870_SNP [dm6]	T	C	9.712e^-5	0.622	UPSTREAM CG8654 INTRON CG8654	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	8831523	2L_8831523_SNP [dm3] 2L_8831523_SNP [dm6]	G	T	9.740e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	19295765	2R_19295765_SNP [dm3] 2R_23408242_SNP [dm6]	C	T	9.746e^-5	0.622	INTERGENIC
3L	12851435	3L_12851435_SNP [dm3] 3L_12858335_SNP [dm6]	A	G	9.809e^-5	0.622	UTR_3_PRIME CG32107 DOWNSTREAM Ent3 INTRON CG32107
2L	11201812	2L_11201812_SNP [dm3] 2L_11201812_SNP [dm6]	C	G	9.816e^-5	0.622	INTRON Ca-beta
3L	9408807	3L_9408807_SNP [dm3] 3L_9415707_SNP [dm6]	G	A	9.876e^-5	0.622	DOWNSTREAM CG3982 INTRON CG3967
2L	7620113	2L_7620113_SNP [dm3] 2L_7620113_SNP [dm6]	G	A	9.891e^-5	0.622	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3R	9739012	3R_9739012_SNP [dm3] 3R_13913290_SNP [dm6]	C	G	9.946e^-5	0.622	INTERGENIC	TF binding site mE1_TFBS_inv
4	1118948	4_1118948_SNP [dm3] 4_1098322_SNP [dm6]	C	T	9.951e^-5	0.622	UPSTREAM sv INTRON sv	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12996453	X_12996453_SNP [dm3] X_13102420_SNP [dm6]	G	A	1.003e^-4	0.623	INTRON CG43313
3L	14570131	3L_14570131_SNP [dm3] 3L_14577031_SNP [dm6]	C	T	1.013e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17682564	2L_17682564_SNP [dm3] 2L_17682564_SNP [dm6]	T	C	1.014e^-4	0.623	INTRON CadN
3R	24051949	3R_24051949_SNP [dm3] 3R_28226227_SNP [dm6]	A	T	1.019e^-4	0.623	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13009531	3L_13009531_SNP [dm3] 3L_13016431_SNP [dm6]	G	A	1.023e^-4	0.623	SYNONYMOUS_CODING CG11267 DOWNSTREAM mRpL20	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	659233	2L_659233_SNP [dm3] 2L_659233_SNP [dm6]	G	A	1.027e^-4	0.623	INTRON ds	TF binding site mE1_TFBS_inv
2L	16620554	2L_16620554_SNP [dm3] 2L_16620554_SNP [dm6]	C	T	1.027e^-4	0.623	INTRON CG42389
3L	11393816	3L_11393816_DEL [dm3] 3L_11400716_DEL [dm6]	CCA	C	1.031e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11393821	3L_11393821_DEL [dm3] 3L_11400721_DEL [dm6]	TCAC	T	1.031e^-4	0.623	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15886544	2R_15886544_SNP [dm3] 2R_19999039_SNP [dm6]	G	A	1.033e^-4	0.623	INTERGENIC
2L	5160107	2L_5160107_SNP [dm3] 2L_5160107_SNP [dm6]	C	T	1.034e^-4	0.623	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	15801366	2L_15801366_SNP [dm3] 2L_15801366_SNP [dm6]	G	T	1.056e^-4	0.635	INTERGENIC
2L	15795897	2L_15795897_SNP [dm3] 2L_15795897_SNP [dm6]	C	T	1.069e^-4	0.637	INTERGENIC
2L	16126972	2L_16126972_SNP [dm3] 2L_16126972_SNP [dm6]	T	G	1.071e^-4	0.637	INTERGENIC
3R	10216408	3R_10216408_SNP [dm3] 3R_14390686_SNP [dm6]	C	A	1.073e^-4	0.637	DOWNSTREAM cv-c INTERGENIC
3R	14196642	3R_14196642_SNP [dm3] 3R_18370920_SNP [dm6]	A	G	1.077e^-4	0.637	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	3436675	2L_3436675_SNP [dm3] 2L_3436675_SNP [dm6]	A	T	1.077e^-4	0.637	INTERGENIC
X	4290756	X_4290756_SNP [dm3] X_4396723_SNP [dm6]	T	C	1.083e^-4	0.638	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10197991	2R_10197991_SNP [dm3] 2R_14310486_SNP [dm6]	C	T	1.098e^-4	0.638	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	24205759	3R_24205759_SNP [dm3] 3R_28380037_SNP [dm6]	T	C	1.099e^-4	0.638	INTERGENIC
3L	14333618	3L_14333618_SNP [dm3] 3L_14340518_SNP [dm6]	G	T	1.101e^-4	0.638	INTRON fz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7620112	2L_7620112_SNP [dm3] 2L_7620112_SNP [dm6]	G	C	1.106e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	16155320	X_16155320_SNP [dm3] X_16261287_SNP [dm6]	T	A	1.118e^-4	0.638	INTERGENIC
X	11226808	X_11226808_SNP [dm3] X_11332775_SNP [dm6]	C	A	1.120e^-4	0.638	SYNONYMOUS_CODING CG1657	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6874015	3L_6874015_DEL [dm3] 3L_6880915_DEL [dm6]	TAC	T	1.120e^-4	0.638	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4160882	X_4160882_SNP [dm3] X_4266849_SNP [dm6]	A	C	1.124e^-4	0.638	DOWNSTREAM CG12691 INTERGENIC
2R	18610843	2R_18610843_SNP [dm3] 2R_22723338_SNP [dm6]	G	T	1.127e^-4	0.638	INTRON jbug	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	4411246	3L_4411246_SNP [dm3] 3L_4411246_SNP [dm6]	G	T	1.127e^-4	0.638	INTRON DOR
2R	13666139	2R_13666139_SNP [dm3] 2R_17778634_SNP [dm6]	G	A	1.130e^-4	0.638	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	16162603	X_16162603_SNP [dm3] X_16268570_SNP [dm6]	C	T	1.138e^-4	0.638	NON_SYNONYMOUS_CODING kat80	TF binding site mE1_TFBS_sens
3L	2158494	3L_2158494_SNP [dm3] 3L_2158494_SNP [dm6]	G	A	1.138e^-4	0.638	SYNONYMOUS_CODING CG15822	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10920126	X_10920126_SNP [dm3] X_11026093_SNP [dm6]	C	T	1.145e^-4	0.638	INTRON CG42339
2R	17622146	2R_17622146_SNP [dm3] 2R_21734641_SNP [dm6]	T	A	1.147e^-4	0.638	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14865610	X_14865610_SNP [dm3] X_14971577_SNP [dm6]	G	T	1.152e^-4	0.638	UTR_5_PRIME eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14581245	3R_14581245_SNP [dm3] 3R_18755523_SNP [dm6]	A	T	1.158e^-4	0.638	INTRON CG14299
2R	19102766	2R_19102766_SNP [dm3] 2R_23215243_SNP [dm6]	A	G	1.160e^-4	0.638	INTERGENIC
X	16155272	X_16155272_SNP [dm3] X_16261239_SNP [dm6]	T	A	1.160e^-4	0.638	INTERGENIC
2L	7857813	2L_7857813_SNP [dm3] 2L_7857813_SNP [dm6]	G	C	1.161e^-4	0.638	SYNONYMOUS_CODING lectin-28C DOWNSTREAM TwdlE	TF binding site BDTNP1_TFBS_Med
2R	5301883	2R_5301883_SNP [dm3] 2R_9414378_SNP [dm6]	C	T	1.161e^-4	0.638	START_GAINED wun2 UTR_5_PRIME wun2 UPSTREAM wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	19550611	X_19550611_SNP [dm3] X_19656578_SNP [dm6]	T	G	1.167e^-4	0.638	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad
2R	4657160	2R_4657160_SNP [dm3] 2R_8769655_SNP [dm6]	C	T	1.167e^-4	0.638	UPSTREAM CR44278 INTERGENIC
2L	10486914	2L_10486914_SNP [dm3] 2L_10486914_SNP [dm6]	C	G	1.170e^-4	0.638	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
2L	17737890	2L_17737890_SNP [dm3] 2L_17737890_SNP [dm6]	G	A	1.170e^-4	0.638	INTRON CadN	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10200612	2R_10200612_SNP [dm3] 2R_14313107_SNP [dm6]	G	A	1.175e^-4	0.638	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4711874	3L_4711874_SNP [dm3] 3L_4711874_SNP [dm6]	C	A	1.177e^-4	0.638	INTRON RhoGEF64C
3R	24666757	3R_24666757_SNP [dm3] 3R_28841035_SNP [dm6]	T	C	1.178e^-4	0.638	INTRON Apc
X	18798335	X_18798335_SNP [dm3] X_18904302_SNP [dm6]	A	T	1.180e^-4	0.638	INTRON CG7378
2R	17269959	2R_17269959_SNP [dm3] 2R_21382454_SNP [dm6]	G	T	1.191e^-4	0.642	DOWNSTREAM CG10795 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	1031209	2L_1031209_SNP [dm3] 2L_1031209_SNP [dm6]	G	T	1.198e^-4	0.642	INTRON IA-2
3R	5802792	3R_5802792_SNP [dm3] 3R_9977070_SNP [dm6]	G	T	1.204e^-4	0.642	INTRON Glut4EF
X	8584866	X_8584866_SNP [dm3] X_8690833_SNP [dm6]	G	A	1.204e^-4	0.642	SYNONYMOUS_CODING Ogg1 UPSTREAM Ppt1 DOWNSTREAM CG11294	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	11723243	2R_11723243_SNP [dm3] 2R_15835738_SNP [dm6]	T	A	1.206e^-4	0.642	UPSTREAM Poxn INTRON tun	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
3L	17828876	3L_17828876_SNP [dm3] 3L_17835776_SNP [dm6]	T	A	1.213e^-4	0.642	UPSTREAM CG32189 INTRON Grd
3R	5390251	3R_5390251_SNP [dm3] 3R_9564529_SNP [dm6]	C	T	1.214e^-4	0.642	SYNONYMOUS_CODING Vps45 UPSTREAM CG9393	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9306449	2L_9306449_SNP [dm3] 2L_9306449_SNP [dm6]	A	T	1.217e^-4	0.642	INTERGENIC
3L	12836002	3L_12836002_INS [dm3] 3L_12842902_INS [dm6]	G	GG	1.226e^-4	0.642	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	5034942	3R_5034942_SNP [dm3] 3R_9209220_SNP [dm6]	G	C	1.234e^-4	0.642	INTRON pum	TF binding site mE1_TFBS_inv
3L	13008839	3L_13008839_SNP [dm3] 3L_13015739_SNP [dm6]	A	T	1.242e^-4	0.642	UPSTREAM CG11267 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
3R	14196634	3R_14196634_SNP [dm3] 3R_18370912_SNP [dm6]	A	C	1.249e^-4	0.642	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	8503709	2L_8503709_SNP [dm3] 2L_8503709_SNP [dm6]	T	C	1.249e^-4	0.642	INTRON Dh31
3L	9654669	3L_9654669_SNP [dm3] 3L_9661569_SNP [dm6]	T	C	1.251e^-4	0.642	INTRON fry	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16418588	2L_16418588_INS [dm3] 2L_16418588_INS [dm6]	A	AA	1.252e^-4	0.642	UPSTREAM snoRNA:Me28S-A2958 INTRON CG5888
3L	5774859	3L_5774859_SNP [dm3] 3L_5781759_SNP [dm6]	G	T	1.257e^-4	0.642	UTR_5_PRIME PGRP-LD UPSTREAM CR45026 INTRON PGRP-LD & 1 other
3R	5749832	3R_5749832_SNP [dm3] 3R_9924110_SNP [dm6]	T	C	1.259e^-4	0.642	INTRON Glut4EF
3L	13011277	3L_13011277_SNP [dm3] 3L_13018177_SNP [dm6]	A	T	1.259e^-4	0.642	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
3R	25897028	3R_25897028_INS [dm3] 3R_30071306_INS [dm6]	G	GCTG	1.259e^-4	0.642	INTRON sima
X	12302163	X_12302163_SNP [dm3] X_12408130_SNP [dm6]	G	A	1.262e^-4	0.642	SYNONYMOUS_CODING CG32651 UPSTREAM CG2574
3L	22284679	3L_22284679_SNP [dm3] 3L_22291579_SNP [dm6]	C	T	1.272e^-4	0.642	NON_SYNONYMOUS_CODING Aats-ile
3L	7848744	3L_7848744_SNP [dm3] 3L_7855644_SNP [dm6]	G	A	1.273e^-4	0.642	UPSTREAM Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	5522538	X_5522538_SNP [dm3] X_5628505_SNP [dm6]	C	T	1.273e^-4	0.642	UTR_3_PRIME CG42492
3L	8597118	3L_8597118_SNP [dm3] 3L_8604018_SNP [dm6]	C	T	1.274e^-4	0.642	UTR_5_PRIME CG5989 UPSTREAM CG6282	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	14460614	3R_14460614_INS [dm3] 3R_18634892_INS [dm6]	A	AA	1.277e^-4	0.642	INTRON qin & 1 other
3L	15055734	3L_15055734_SNP [dm3] 3L_15062634_SNP [dm6]	T	C	1.277e^-4	0.642	UPSTREAM CG13460 & 1 other INTRON Sytbeta
3L	3951507	3L_3951507_SNP [dm3] 3L_3951507_SNP [dm6]	T	C	1.284e^-4	0.644	INTRON CG14984
X	4662396	X_4662396_SNP [dm3] X_4768363_SNP [dm6]	C	T	1.299e^-4	0.648	DOWNSTREAM CG15472 INTERGENIC
3R	2307512	3R_2307512_SNP [dm3] 3R_6481790_SNP [dm6]	T	C	1.303e^-4	0.648	UPSTREAM CG15186 INTRON CG15186
3L	7533795	3L_7533795_SNP [dm3] 3L_7540695_SNP [dm6]	A	G	1.305e^-4	0.648	SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf & 1 other
2R	14955110	2R_14955110_SNP [dm3] 2R_19067605_SNP [dm6]	C	T	1.306e^-4	0.648	INTRON 5-HT1A
2R	16250072	2R_16250072_SNP [dm3] 2R_20362567_SNP [dm6]	G	T	1.317e^-4	0.652	INTERGENIC
3L	3141194	3L_3141194_SNP [dm3] 3L_3141194_SNP [dm6]	A	G	1.326e^-4	0.654	INTRON CG11537	TF binding site mE1_TFBS_HSA
3R	14196633	3R_14196633_SNP [dm3] 3R_18370911_SNP [dm6]	G	A	1.332e^-4	0.654	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2R	11764104	2R_11764104_SNP [dm3] 2R_15876599_SNP [dm6]	G	T	1.335e^-4	0.654	INTRON sli	TF binding site BDTNP1_TFBS_da
X	14149427	X_14149427_SNP [dm3] X_14255394_SNP [dm6]	G	A	1.339e^-4	0.654	DOWNSTREAM mud INTRON mud	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	16204201	2R_16204201_SNP [dm3] 2R_20316696_SNP [dm6]	C	T	1.343e^-4	0.654	UTR_5_PRIME CG13868 UPSTREAM CG13871 DOWNSTREAM CR44642
2L	11070869	2L_11070869_SNP [dm3] 2L_11070869_SNP [dm6]	G	A	1.344e^-4	0.654	UPSTREAM CG14915 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24904232	3R_24904232_SNP [dm3] 3R_29078510_SNP [dm6]	T	G	1.347e^-4	0.655	INTRON CG11873
3L	3528540	3L_3528540_SNP [dm3] 3L_3528540_SNP [dm6]	A	T	1.356e^-4	0.657	INTRON Eip63E
2L	9445602	2L_9445602_SNP [dm3] 2L_9445602_SNP [dm6]	A	C	1.363e^-4	0.659	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
3R	5995783	3R_5995783_SNP [dm3] 3R_10170061_SNP [dm6]	T	G	1.375e^-4	0.659	INTRON Best1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2R	9269238	2R_9269238_SNP [dm3] 2R_13381733_SNP [dm6]	G	A	1.379e^-4	0.659	INTERGENIC
2L	6314152	2L_6314152_SNP [dm3] 2L_6314152_SNP [dm6]	C	A	1.379e^-4	0.659	INTRON Ddr
2L	17494944	2L_17494944_SNP [dm3] 2L_17494944_SNP [dm6]	C	T	1.380e^-4	0.659	INTRON qua
3R	14196704	3R_14196704_SNP [dm3] 3R_18370982_SNP [dm6]	C	T	1.381e^-4	0.659	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	8466240	X_8466240_SNP [dm3] X_8572207_SNP [dm6]	G	A	1.383e^-4	0.659	SYNONYMOUS_CODING spirit	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9264485	2L_9264485_SNP [dm3] 2L_9264485_SNP [dm6]	T	C	1.390e^-4	0.66	INTRON Ggamma30A
3L	1738266	3L_1738266_SNP [dm3] 3L_1738266_SNP [dm6]	A	T	1.401e^-4	0.662	UPSTREAM Gk & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	15446169	3R_15446169_SNP [dm3] 3R_19620447_SNP [dm6]	G	T	1.402e^-4	0.662	INTRON CG6231
2R	10217373	2R_10217373_SNP [dm3] 2R_14329868_SNP [dm6]	T	C	1.407e^-4	0.663	INTRON Shroom	TF binding site mE1_TFBS_chinmo
X	17272223	X_17272223_SNP [dm3] X_17378190_SNP [dm6]	C	A	1.415e^-4	0.665	DOWNSTREAM CR43491 INTERGENIC
2R	13799722	2R_13799722_SNP [dm3] 2R_17912217_SNP [dm6]	A	T	1.425e^-4	0.667	INTRON Elk
3L	5774645	3L_5774645_SNP [dm3] 3L_5781545_SNP [dm6]	T	A	1.430e^-4	0.667	SPLICE_SITE_REGION PGRP-LD & 1 other UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM CR45026 INTRON PGRP-LD & 1 other
3R	12325242	3R_12325242_SNP [dm3] 3R_16499520_SNP [dm6]	G	A	1.431e^-4	0.667	UPSTREAM Gr89a INTRON decay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7330950	3L_7330950_SNP [dm3] 3L_7337850_SNP [dm6]	T	C	1.440e^-4	0.667	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5802465	3R_5802465_SNP [dm3] 3R_9976743_SNP [dm6]	G	C	1.441e^-4	0.667	INTRON Glut4EF
3R	26503512	3R_26503512_SNP [dm3] 3R_30677790_SNP [dm6]	G	T	1.445e^-4	0.667	INTERGENIC
3L	17915232	3L_17915232_SNP [dm3] 3L_17922132_SNP [dm6]	A	G	1.447e^-4	0.667	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4414288	3L_4414288_SNP [dm3] 3L_4414288_SNP [dm6]	T	G	1.447e^-4	0.667	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8466174	X_8466174_SNP [dm3] X_8572141_SNP [dm6]	A	C	1.460e^-4	0.671	SYNONYMOUS_CODING spirit	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1026783	3R_1026783_SNP [dm3] 3R_5201061_SNP [dm6]	A	T	1.468e^-4	0.673	INTRON cno
3L	8550711	3L_8550711_SNP [dm3] 3L_8557611_SNP [dm6]	G	C	1.491e^-4	0.679	UPSTREAM rhea INTRON rhea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8770561	X_8770561_SNP [dm3] X_8876528_SNP [dm6]	C	T	1.494e^-4	0.679	UPSTREAM Moe INTRON Moe
3L	14291438	3L_14291438_SNP [dm3] 3L_14298338_SNP [dm6]	C	T	1.495e^-4	0.679	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	2863051	3L_2863051_SNP [dm3] 3L_2863051_SNP [dm6]	A	T	1.503e^-4	0.679	INTRON CG43444
2L	17740421	2L_17740421_SNP [dm3] 2L_17740421_SNP [dm6]	A	G	1.506e^-4	0.679	INTRON CadN	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15445839	3R_15445839_DEL [dm3] 3R_19620117_DEL [dm6]	GT	A	1.512e^-4	0.679	INTRON CG6231
X	13301968	X_13301968_SNP [dm3] X_13407935_SNP [dm6]	G	T	1.516e^-4	0.679	INTRON GstT4
2R	18372002	2R_18372002_SNP [dm3] 2R_22484497_SNP [dm6]	A	T	1.520e^-4	0.679	SYNONYMOUS_CODING CG4554	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12798505	X_12798505_SNP [dm3] X_12904472_SNP [dm6]	C	T	1.521e^-4	0.679	SYNONYMOUS_CODING CG4404 UPSTREAM CG4407	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15951558	2L_15951558_SNP [dm3] 2L_15951558_SNP [dm6]	C	T	1.522e^-4	0.679	INTRON beat-Ib
2L	11201841	2L_11201841_SNP [dm3] 2L_11201841_SNP [dm6]	G	T	1.525e^-4	0.679	INTRON Ca-beta
3L	14569281	3L_14569281_SNP [dm3] 3L_14576181_SNP [dm6]	C	G	1.526e^-4	0.679	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	24198356	3R_24198356_SNP [dm3] 3R_28372634_SNP [dm6]	T	A	1.528e^-4	0.679	INTERGENIC
X	8172666	X_8172666_SNP [dm3] X_8278633_SNP [dm6]	A	G	1.533e^-4	0.68	UTR_3_PRIME nAChRalpha3
2L	1211385	2L_1211385_SNP [dm3] 2L_1211385_SNP [dm6]	C	T	1.539e^-4	0.681	INTERGENIC
X	4292951	X_4292951_SNP [dm3] X_4398918_SNP [dm6]	T	C	1.543e^-4	0.681	INTRON CR32773
3L	4710366	3L_4710366_SNP [dm3] 3L_4710366_SNP [dm6]	C	T	1.549e^-4	0.682	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1903202	3R_1903202_SNP [dm3] 3R_6077480_SNP [dm6]	A	G	1.556e^-4	0.683	NON_SYNONYMOUS_CODING Or83c
3L	5774228	3L_5774228_SNP [dm3] 3L_5781128_SNP [dm6]	C	T	1.567e^-4	0.685	START_GAINED PGRP-LD UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM PGRP-LD & 1 other INTRON PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9014070	3L_9014070_SNP [dm3] 3L_9020970_SNP [dm6]	A	C	1.572e^-4	0.685	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	9251214	3R_9251214_SNP [dm3] 3R_13425492_SNP [dm6]	A	G	1.576e^-4	0.685	UPSTREAM Act87E DOWNSTREAM CR45591 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26420331	3R_26420331_SNP [dm3] 3R_30594609_SNP [dm6]	C	T	1.578e^-4	0.685	INTRON CG2246
3L	9865312	3L_9865312_SNP [dm3] 3L_9872212_SNP [dm6]	T	C	1.581e^-4	0.685	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	12362610	3L_12362610_SNP [dm3] 3L_12369510_SNP [dm6]	T	C	1.582e^-4	0.685	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13168731	3R_13168731_SNP [dm3] 3R_17343009_SNP [dm6]	C	A	1.591e^-4	0.687	INTRON beat-IIa
3R	25921931	3R_25921931_SNP [dm3] 3R_30096209_SNP [dm6]	T	A	1.594e^-4	0.687	INTRON sima
3L	8146719	3L_8146719_SNP [dm3] 3L_8153619_SNP [dm6]	C	T	1.605e^-4	0.69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12858356	3L_12858356_SNP [dm3] 3L_12865256_SNP [dm6]	C	T	1.615e^-4	0.69	INTERGENIC
X	11627399	X_11627399_SNP [dm3] X_11733366_SNP [dm6]	T	A	1.620e^-4	0.69	UPSTREAM inaF-B INTRON CG15221 & 1 other
2L	3242629	2L_3242629_SNP [dm3] 2L_3242629_SNP [dm6]	G	A	1.621e^-4	0.69	INTERGENIC
3L	5774597	3L_5774597_DEL [dm3] 3L_5781497_DEL [dm6]	AA	A	1.627e^-4	0.69	UTR_5_PRIME PGRP-LD UTR_3_PRIME Pmi UPSTREAM PGRP-LD & 1 other INTRON PGRP-LD & 1 other
3R	5034883	3R_5034883_SNP [dm3] 3R_9209161_SNP [dm6]	G	C	1.628e^-4	0.69	INTRON pum	TF binding site mE1_TFBS_inv
3L	3913347	3L_3913347_SNP [dm3] 3L_3913347_SNP [dm6]	G	A	1.628e^-4	0.69	INTRON Eip63F-1
2L	14833714	2L_14833714_SNP [dm3] 2L_14833714_SNP [dm6]	G	T	1.641e^-4	0.69	INTERGENIC
3L	14569264	3L_14569264_SNP [dm3] 3L_14576164_SNP [dm6]	T	A	1.643e^-4	0.69	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14619014	X_14619014_SNP [dm3] X_14724981_SNP [dm6]	C	T	1.645e^-4	0.69	INTRON NetB
3L	19497511	3L_19497511_SNP [dm3] 3L_19504411_SNP [dm6]	C	T	1.646e^-4	0.69	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
X	8071826	X_8071826_SNP [dm3] X_8177793_SNP [dm6]	G	A	1.646e^-4	0.69	UPSTREAM slpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	9445837	2L_9445837_SNP [dm3] 2L_9445837_SNP [dm6]	A	C	1.653e^-4	0.69	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	3427818	X_3427818_SNP [dm3] X_3533785_SNP [dm6]	A	G	1.653e^-4	0.69	INTRON CG32791	TF binding site mE1_TFBS_inv
3L	11442984	3L_11442984_SNP [dm3] 3L_11449884_SNP [dm6]	C	T	1.662e^-4	0.69	INTERGENIC
3R	4882780	3R_4882780_SNP [dm3] 3R_9057058_SNP [dm6]	T	A	1.663e^-4	0.69	INTRON Kdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	16720890	3L_16720890_SNP [dm3] 3L_16727790_SNP [dm6]	A	T	1.668e^-4	0.69	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20557089	X_20557089_SNP [dm3] X_20686062_SNP [dm6]	G	T	1.668e^-4	0.69	UPSTREAM CR43862 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3275368	3L_3275368_SNP [dm3] 3L_3275368_SNP [dm6]	T	C	1.670e^-4	0.69	INTRON CG14960
3R	13168645	3R_13168645_SNP [dm3] 3R_17342923_SNP [dm6]	T	C	1.673e^-4	0.69	INTRON beat-IIa
2L	11334482	2L_11334482_INS [dm3] 2L_11334482_INS [dm6]	G	GG	1.679e^-4	0.69	INTERGENIC
X	11627415	X_11627415_SNP [dm3] X_11733382_SNP [dm6]	C	T	1.685e^-4	0.69	UPSTREAM inaF-B INTRON CG15221 & 1 other
X	8466365	X_8466365_INS [dm3] X_8572332_INS [dm6]	G	GG	1.686e^-4	0.69	INTRON spirit	TF binding site mE1_TFBS_chinmo
X	11226826	X_11226826_SNP [dm3] X_11332793_SNP [dm6]	C	T	1.699e^-4	0.693	SYNONYMOUS_CODING CG1657	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4271849	X_4271849_SNP [dm3] X_4377816_SNP [dm6]	C	T	1.699e^-4	0.693	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	11204652	3L_11204652_SNP [dm3] 3L_11211552_SNP [dm6]	G	A	1.709e^-4	0.694	NON_SYNONYMOUS_CODING CG7600 UPSTREAM Ube3a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	9442791	2L_9442791_SNP [dm3] 2L_9442791_SNP [dm6]	C	T	1.710e^-4	0.694	INTRON numb
2R	13794502	2R_13794502_SNP [dm3] 2R_17906997_SNP [dm6]	A	G	1.716e^-4	0.694	INTRON Elk
3L	6667587	3L_6667587_SNP [dm3] 3L_6674487_SNP [dm6]	G	A	1.718e^-4	0.694	INTERGENIC
X	14075676	X_14075676_SNP [dm3] X_14181643_SNP [dm6]	C	G	1.721e^-4	0.694	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
2L	8491660	2L_8491660_SNP [dm3] 2L_8491660_SNP [dm6]	C	T	1.724e^-4	0.694	DOWNSTREAM Dh31 & 1 other INTERGENIC
X	4271835	X_4271835_SNP [dm3] X_4377802_SNP [dm6]	T	A	1.732e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
2R	13116725	2R_13116725_SNP [dm3] 2R_17229220_SNP [dm6]	G	A	1.739e^-4	0.696	INTRON mbl
X	10264355	X_10264355_SNP [dm3] X_10370322_SNP [dm6]	C	T	1.741e^-4	0.696	INTRON CG17841
3L	6874011	3L_6874011_INS [dm3] 3L_6880911_INS [dm6]	T	TTTTA	1.743e^-4	0.696	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11627405	X_11627405_SNP [dm3] X_11733372_SNP [dm6]	G	T	1.750e^-4	0.696	UPSTREAM inaF-B INTRON CG15221 & 1 other
3R	10270462	3R_10270462_DEL [dm3] 3R_14444740_DEL [dm6]	CT	C	1.755e^-4	0.696	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7331186	3L_7331186_SNP [dm3] 3L_7338086_SNP [dm6]	C	T	1.755e^-4	0.696	NON_SYNONYMOUS_CODING eco	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5774065	3L_5774065_SNP [dm3] 3L_5780965_SNP [dm6]	C	T	1.758e^-4	0.696	SYNONYMOUS_CODING Pmi UTR_5_PRIME PGRP-LD UPSTREAM PGRP-LD & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11443062	3L_11443062_SNP [dm3] 3L_11449962_SNP [dm6]	T	A	1.762e^-4	0.696	INTERGENIC
2R	12105266	2R_12105266_SNP [dm3] 2R_16217761_SNP [dm6]	T	C	1.767e^-4	0.696	INTRON mrj	TF binding site BDTNP1_TFBS_da
2L	7950431	2L_7950431_INS [dm3] 2L_7950431_INS [dm6]	C	CC	1.787e^-4	0.699	INTRON Snoo
X	5996365	X_5996365_SNP [dm3] X_6102332_SNP [dm6]	T	C	1.793e^-4	0.699	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17731644	3L_17731644_SNP [dm3] 3L_17738544_SNP [dm6]	A	T	1.800e^-4	0.699	INTRON Ccn
2R	10200294	2R_10200294_SNP [dm3] 2R_14312789_SNP [dm6]	G	T	1.808e^-4	0.699	INTRON Shroom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8378664	2L_8378664_SNP [dm3] 2L_8378664_SNP [dm6]	C	T	1.808e^-4	0.699	NON_SYNONYMOUS_CODING Aats-ala DOWNSTREAM CG17294	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7273923	3L_7273923_SNP [dm3] 3L_7280823_SNP [dm6]	T	G	1.808e^-4	0.699	INTRON unc-13-4A
3L	2282635	3L_2282635_SNP [dm3] 3L_2282635_SNP [dm6]	G	C	1.812e^-4	0.699	UPSTREAM MsR2 INTERGENIC
2L	2828253	2L_2828253_SNP [dm3] 2L_2828253_SNP [dm6]	G	A	1.820e^-4	0.699	INTRON Duox
3L	7847664	3L_7847664_SNP [dm3] 3L_7854564_SNP [dm6]	C	G	1.822e^-4	0.699	UTR_5_PRIME Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12851980	3L_12851980_SNP [dm3] 3L_12858880_SNP [dm6]	G	A	1.823e^-4	0.699	SYNONYMOUS_CODING CG32107
2L	16126971	2L_16126971_SNP [dm3] 2L_16126971_SNP [dm6]	C	T	1.825e^-4	0.699	INTERGENIC
3L	11268534	3L_11268534_SNP [dm3] 3L_11275434_SNP [dm6]	T	A	1.825e^-4	0.699	UPSTREAM CR44720 INTERGENIC
2L	4345933	2L_4345933_SNP [dm3] 2L_4345933_SNP [dm6]	A	G	1.829e^-4	0.699	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
4	824977	4_824977_SNP [dm3] 4_804351_SNP [dm6]	G	C	1.829e^-4	0.699	UPSTREAM Sox102F INTRON Sox102F	transposable element FlyBase
3R	25341464	3R_25341464_SNP [dm3] 3R_29515742_SNP [dm6]	G	C	1.833e^-4	0.699	UTR_5_PRIME CG2014 UPSTREAM CG2014	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5385598	X_5385598_SNP [dm3] X_5491565_SNP [dm6]	A	C	1.836e^-4	0.699	SYNONYMOUS_CODING SPR	TF binding site mE1_TFBS_chinmo
X	14076188	X_14076188_SNP [dm3] X_14182155_SNP [dm6]	C	T	1.836e^-4	0.699	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2332475	3L_2332475_SNP [dm3] 3L_2332475_SNP [dm6]	G	C	1.843e^-4	0.699	INTRON MsR1
3L	14994551	3L_14994551_SNP [dm3] 3L_15001451_SNP [dm6]	A	T	1.846e^-4	0.699	UTR_3_PRIME Reck DOWNSTREAM Prosbeta2
3R	13168730	3R_13168730_SNP [dm3] 3R_17343008_SNP [dm6]	A	C	1.854e^-4	0.7	INTRON beat-IIa
2L	10521817	2L_10521817_SNP [dm3] 2L_10521817_SNP [dm6]	A	T	1.857e^-4	0.7	INTERGENIC
X	8634894	X_8634894_SNP [dm3] X_8740861_SNP [dm6]	A	G	1.858e^-4	0.7	INTERGENIC
X	20750388	X_20750388_SNP [dm3] X_20879361_SNP [dm6]	C	T	1.866e^-4	0.701	INTRON shakB
X	16108503	X_16108503_SNP [dm3] X_16214470_SNP [dm6]	G	T	1.873e^-4	0.701	INTRON disco	TF binding site mE1_TFBS_HSA
2R	13794474	2R_13794474_SNP [dm3] 2R_17906969_SNP [dm6]	G	T	1.873e^-4	0.701	INTRON Elk
2L	13747714	2L_13747714_SNP [dm3] 2L_13747714_SNP [dm6]	T	C	1.885e^-4	0.703	UPSTREAM mir-1002 DOWNSTREAM mir-968 INTRON CR44846 & 1 other
3R	1058383	3R_1058383_SNP [dm3] 3R_5232661_SNP [dm6]	C	T	1.891e^-4	0.703	NON_SYNONYMOUS_CODING Mms19 UPSTREAM Kat60	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	16159560	X_16159560_SNP [dm3] X_16265527_SNP [dm6]	G	A	1.893e^-4	0.703	SYNONYMOUS_CODING CG12507
3R	7463792	3R_7463792_SNP [dm3] 3R_11638070_SNP [dm6]	G	C	1.896e^-4	0.703	UPSTREAM Csk INTRON Csk EXON CR44137
2L	3407678	2L_3407678_SNP [dm3] 2L_3407678_SNP [dm6]	G	A	1.898e^-4	0.703	SYNONYMOUS_CODING pgant2
3L	3348952	3L_3348952_SNP [dm3] 3L_3348952_SNP [dm6]	C	T	1.911e^-4	0.707	INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8376056	X_8376056_SNP [dm3] X_8482023_SNP [dm6]	G	A	1.914e^-4	0.707	INTRON CG33223 & 1 other	TF binding site mE1_TFBS_chinmo
2L	12186999	2L_12186999_SNP [dm3] 2L_12186999_SNP [dm6]	T	A	1.923e^-4	0.709	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7245201	2L_7245201_SNP [dm3] 2L_7245201_SNP [dm6]	G	A	1.928e^-4	0.709	INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	16127155	2L_16127155_SNP [dm3] 2L_16127155_SNP [dm6]	G	T	1.934e^-4	0.709	INTERGENIC
3L	18446551	3L_18446551_INS [dm3] 3L_18453451_INS [dm6]	T	TT	1.935e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13043216	X_13043216_SNP [dm3] X_13149183_SNP [dm6]	T	C	1.945e^-4	0.709	INTRON CG32645
3L	14569253	3L_14569253_SNP [dm3] 3L_14576153_SNP [dm6]	A	C	1.948e^-4	0.709	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	3420400	X_3420400_DEL [dm3] X_3526367_DEL [dm6]	ACA	A	1.948e^-4	0.709	INTRON CG32791
3L	15889772	3L_15889772_SNP [dm3] 3L_15896672_SNP [dm6]	G	A	1.957e^-4	0.709	INTRON pHCl
3L	7844460	3L_7844460_SNP [dm3] 3L_7851360_SNP [dm6]	T	C	1.960e^-4	0.709	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	13168735	3R_13168735_SNP [dm3] 3R_17343013_SNP [dm6]	T	C	1.960e^-4	0.709	INTRON beat-IIa
X	14076193	X_14076193_SNP [dm3] X_14182160_SNP [dm6]	A	G	1.961e^-4	0.709	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15416677	3R_15416677_SNP [dm3] 3R_19590955_SNP [dm6]	C	T	1.965e^-4	0.709	SPLICE_SITE_REGION Dys INTRON Dys	TF binding site mE1_TFBS_cad
3R	6933224	3R_6933224_SNP [dm3] 3R_11107502_SNP [dm6]	A	T	1.969e^-4	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	11991859	2R_11991859_SNP [dm3] 2R_16104354_SNP [dm6]	C	G	1.976e^-4	0.71	INTRON Rho1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	3197945	X_3197945_SNP [dm3] X_3303912_SNP [dm6]	A	T	1.987e^-4	0.712	INTRON dnc
2L	3131813	2L_3131813_SNP [dm3] 2L_3131813_SNP [dm6]	C	T	1.990e^-4	0.712	INTRON toc
2R	14303713	2R_14303713_SNP [dm3] 2R_18416208_SNP [dm6]	G	C	2.022e^-4	0.715	SYNONYMOUS_CODING Dp1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9445497	2L_9445497_SNP [dm3] 2L_9445497_SNP [dm6]	C	T	2.022e^-4	0.715	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	14948758	3R_14948758_SNP [dm3] 3R_19123036_SNP [dm6]	G	A	2.025e^-4	0.715	INTRON CG6040
3R	1025034	3R_1025034_SNP [dm3] 3R_5199312_SNP [dm6]	G	T	2.027e^-4	0.715	INTRON cno	TF binding site mE1_TFBS_HSA
2L	5159968	2L_5159968_SNP [dm3] 2L_5159968_SNP [dm6]	T	A	2.031e^-4	0.715	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
3L	16796815	3L_16796815_SNP [dm3] 3L_16803715_SNP [dm6]	G	C	2.034e^-4	0.715	INTRON CG9674	TF binding site mE1_TFBS_cad
3L	11228487	3L_11228487_SNP [dm3] 3L_11235387_SNP [dm6]	A	G	2.034e^-4	0.715	INTRON Ir68a
3L	10374680	3L_10374680_SNP [dm3] 3L_10381580_SNP [dm6]	T	C	2.036e^-4	0.715	INTERGENIC
X	20005044	X_20005044_SNP [dm3] X_20111011_SNP [dm6]	T	A	2.039e^-4	0.715	UPSTREAM karr INTERGENIC
X	14075954	X_14075954_SNP [dm3] X_14181921_SNP [dm6]	G	C	2.039e^-4	0.715	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
2R	10310793	2R_10310793_SNP [dm3] 2R_14423288_SNP [dm6]	G	A	2.045e^-4	0.715	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1057249	2L_1057249_SNP [dm3] 2L_1057249_SNP [dm6]	G	A	2.046e^-4	0.715	INTRON S	TF binding site mE1_TFBS_sens
2L	5661957	2L_5661957_SNP [dm3] 2L_5661957_SNP [dm6]	G	T	2.047e^-4	0.715	UPSTREAM Hsp60C EXON CR44821
3L	5586307	3L_5586307_SNP [dm3] 3L_5593207_SNP [dm6]	A	G	2.059e^-4	0.717	UPSTREAM spo INTRON CG10592	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5388665	3R_5388665_SNP [dm3] 3R_9562943_SNP [dm6]	G	A	2.060e^-4	0.717	SYNONYMOUS_CODING CG9393 UPSTREAM Vps45
2R	14955446	2R_14955446_SNP [dm3] 2R_19067941_SNP [dm6]	T	A	2.073e^-4	0.72	INTRON 5-HT1A
3L	9106098	3L_9106098_INS [dm3] 3L_9112998_INS [dm6]	T	TTGT	2.078e^-4	0.721	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7533761	3L_7533761_SNP [dm3] 3L_7540661_SNP [dm6]	C	G	2.092e^-4	0.721	NON_SYNONYMOUS_CODING CG32374 UPSTREAM CG16998 DOWNSTREAM lqf & 1 other
3L	14353750	3L_14353750_SNP [dm3] 3L_14360650_SNP [dm6]	C	A	2.099e^-4	0.721	INTRON fz
2L	6040811	2L_6040811_SNP [dm3] 2L_6040811_SNP [dm6]	A	G	2.101e^-4	0.721	SYNONYMOUS_CODING CG31643 DOWNSTREAM ade2
X	3426860	X_3426860_SNP [dm3] X_3532827_SNP [dm6]	T	G	2.102e^-4	0.721	INTRON CG32791
3R	25009702	3R_25009702_SNP [dm3] 3R_29183980_SNP [dm6]	A	G	2.107e^-4	0.721	INTRON CG14509
X	21048622	X_21048622_SNP [dm3] X_21177595_SNP [dm6]	A	G	2.107e^-4	0.721	INTERGENIC	transposable element FlyBase
2L	11761399	2L_11761399_SNP [dm3] 2L_11761399_SNP [dm6]	C	T	2.109e^-4	0.721	INTERGENIC
2R	10208955	2R_10208955_SNP [dm3] 2R_14321450_SNP [dm6]	C	A	2.110e^-4	0.721	INTRON Shroom	TF binding site mE1_TFBS_cad
3R	15253299	3R_15253299_SNP [dm3] 3R_19427577_SNP [dm6]	G	T	2.120e^-4	0.722	INTRON CG31221
3L	10370723	3L_10370723_SNP [dm3] 3L_10377623_SNP [dm6]	C	T	2.124e^-4	0.722	INTERGENIC
2L	12471851	2L_12471851_SNP [dm3] 2L_12471851_SNP [dm6]	A	T	2.125e^-4	0.722	INTRON bun
2R	15742992	2R_15742992_SNP [dm3] 2R_19855487_SNP [dm6]	T	C	2.132e^-4	0.723	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	14074230	X_14074230_SNP [dm3] X_14180197_SNP [dm6]	G	T	2.136e^-4	0.723	UPSTREAM CG11584 INTERGENIC
2L	16067499	2L_16067499_SNP [dm3] 2L_16067499_SNP [dm6]	C	G	2.144e^-4	0.725	INTRON beat-Ia
3R	26420121	3R_26420121_SNP [dm3] 3R_30594399_SNP [dm6]	C	T	2.163e^-4	0.729	INTRON CG2246
3L	11828839	3L_11828839_SNP [dm3] 3L_11835739_SNP [dm6]	G	T	2.172e^-4	0.729	NON_SYNONYMOUS_CODING CG43064	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	7246470	2L_7246470_SNP [dm3] 2L_7246470_SNP [dm6]	C	T	2.174e^-4	0.729	INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9435920	2L_9435920_SNP [dm3] 2L_9435920_SNP [dm6]	C	A	2.175e^-4	0.729	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like DOWNSTREAM scat	TF binding site BDTNP1_TFBS_dl
2L	17737024	2L_17737024_SNP [dm3] 2L_17737024_SNP [dm6]	A	G	2.180e^-4	0.729	INTRON CadN	TF binding site BDTNP1_TFBS_twi
2L	3106024	2L_3106024_SNP [dm3] 2L_3106024_SNP [dm6]	A	T	2.190e^-4	0.729	INTRON toc	TF binding site mE1_TFBS_Trl
3L	5775282	3L_5775282_SNP [dm3] 3L_5782182_SNP [dm6]	A	C	2.190e^-4	0.729	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi
2L	4749581	2L_4749581_SNP [dm3] 2L_4749581_SNP [dm6]	C	A	2.191e^-4	0.729	INTRON CG15630
2L	6240317	2L_6240317_SNP [dm3] 2L_6240317_SNP [dm6]	C	G	2.195e^-4	0.729	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	16763134	3R_16763134_SNP [dm3] 3R_20937412_SNP [dm6]	C	T	2.196e^-4	0.729	INTRON CG31191
3R	25919173	3R_25919173_SNP [dm3] 3R_30093451_SNP [dm6]	T	C	2.207e^-4	0.73	INTRON sima
X	5629238	X_5629238_SNP [dm3] X_5735205_SNP [dm6]	C	G	2.207e^-4	0.73	DOWNSTREAM CG15773 INTRON CG32758	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25935293	3R_25935293_SNP [dm3] 3R_30109571_SNP [dm6]	A	C	2.223e^-4	0.732	NON_SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7861748	2L_7861748_SNP [dm3] 2L_7861748_SNP [dm6]	C	T	2.228e^-4	0.732	UPSTREAM TwdlE INTERGENIC
2L	1381255	2L_1381255_DEL [dm3] 2L_1381255_DEL [dm6]	TGGTTGATTT	T	2.228e^-4	0.732	UTR_3_PRIME lea EXON CR44898 & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9211281	2L_9211281_SNP [dm3] 2L_9211281_SNP [dm6]	G	A	2.231e^-4	0.732	INTRON tai
X	5449785	X_5449785_SNP [dm3] X_5555752_SNP [dm6]	G	A	2.240e^-4	0.732	INTRON Vsx2	TF binding site mE1_TFBS_Kr
2R	19316592	2R_19316592_SNP [dm3] 2R_23429069_SNP [dm6]	C	T	2.246e^-4	0.732	INTRON CG9815
X	8770571	X_8770571_SNP [dm3] X_8876538_SNP [dm6]	C	T	2.246e^-4	0.732	UPSTREAM Moe INTRON Moe
X	8830537	X_8830537_SNP [dm3] X_8936504_SNP [dm6]	G	C	2.250e^-4	0.732	INTRON rdgA
X	14864989	X_14864989_DEL [dm3] X_14970956_DEL [dm6]	AC	G	2.253e^-4	0.732	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	17998888	3L_17998888_SNP [dm3] 3L_18005788_SNP [dm6]	G	A	2.255e^-4	0.732	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14569260	3L_14569260_SNP [dm3] 3L_14576160_SNP [dm6]	G	A	2.261e^-4	0.732	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	25068827	3R_25068827_SNP [dm3] 3R_29243105_SNP [dm6]	G	A	2.262e^-4	0.732	INTRON CG31445
3L	1189871	3L_1189871_SNP [dm3] 3L_1189871_SNP [dm6]	C	T	2.263e^-4	0.732	DOWNSTREAM Trh INTRON CG13912	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12029784	X_12029784_INS [dm3] X_12135751_INS [dm6]	G	GA	2.272e^-4	0.733	INTRON Ten-a
X	3421272	X_3421272_DEL [dm3] X_3527239_DEL [dm6]	CAAC	TG	2.277e^-4	0.733	INTRON CG32791
X	4611805	X_4611805_SNP [dm3] X_4717772_SNP [dm6]	T	C	2.280e^-4	0.733	INTRON Proc-R
3R	9252241	3R_9252241_SNP [dm3] 3R_13426519_SNP [dm6]	A	T	2.285e^-4	0.734	UTR_5_PRIME Act87E UPSTREAM CR45591 INTRON Act87E	TF binding site BDTNP1_TFBS_twi
2R	18610692	2R_18610692_SNP [dm3] 2R_22723187_SNP [dm6]	T	G	2.289e^-4	0.734	INTRON jbug
3L	7531616	3L_7531616_SNP [dm3] 3L_7538516_SNP [dm6]	T	A	2.298e^-4	0.734	UTR_3_PRIME lqf DOWNSTREAM CG16998 & 1 other
3L	16017395	3L_16017395_SNP [dm3] 3L_16024295_SNP [dm6]	G	A	2.309e^-4	0.734	INTRON Notum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14619015	X_14619015_SNP [dm3] X_14724982_SNP [dm6]	T	C	2.312e^-4	0.734	INTRON NetB
3R	9268999	3R_9268999_SNP [dm3] 3R_13443277_SNP [dm6]	G	C	2.313e^-4	0.734	EXON CR45679
2R	10617505	2R_10617505_DEL [dm3] 2R_14730000_DEL [dm6]	AGTCGGCTTCTA...	A	2.314e^-4	0.734	INTERGENIC
3L	13011348	3L_13011348_SNP [dm3] 3L_13018248_SNP [dm6]	G	A	2.320e^-4	0.734	UPSTREAM ste14 & 1 other DOWNSTREAM CR45445 INTERGENIC
3R	9252628	3R_9252628_SNP [dm3] 3R_13426906_SNP [dm6]	A	G	2.322e^-4	0.734	SYNONYMOUS_CODING Act87E UPSTREAM CR45591	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2521677	3L_2521677_SNP [dm3] 3L_2521677_SNP [dm6]	T	C	2.334e^-4	0.734	INTRON Spn
3R	25688112	3R_25688112_SNP [dm3] 3R_29862390_SNP [dm6]	T	C	2.336e^-4	0.734	UPSTREAM CG15514 & 2 others INTRON RpS8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9803515	2R_9803515_DEL [dm3] 2R_13916010_DEL [dm6]	ATGA	A	2.337e^-4	0.734	INTRON shot
3R	9734624	3R_9734624_SNP [dm3] 3R_13908902_SNP [dm6]	A	G	2.344e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_slp1
2R	10225123	2R_10225123_SNP [dm3] 2R_14337618_SNP [dm6]	A	T	2.346e^-4	0.734	INTRON Shroom	TF binding site mE1_TFBS_HSA
3R	3760114	3R_3760114_SNP [dm3] 3R_7934392_SNP [dm6]	T	G	2.359e^-4	0.734	UTR_3_PRIME dsx DOWNSTREAM dsx INTRON dsx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10552117	3L_10552117_SNP [dm3] 3L_10559017_SNP [dm6]	G	A	2.368e^-4	0.734	UTR_5_PRIME CG6527 INTRON A2bp1
3L	4708668	3L_4708668_SNP [dm3] 3L_4708668_SNP [dm6]	T	G	2.369e^-4	0.734	DOWNSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13013942	3L_13013942_DEL [dm3] 3L_13020842_DEL [dm6]	AT	A	2.373e^-4	0.734	INTRON AdenoK
X	19551288	X_19551288_SNP [dm3] X_19657255_SNP [dm6]	A	T	2.374e^-4	0.734	NON_SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13030302	2R_13030302_SNP [dm3] 2R_17142797_SNP [dm6]	T	C	2.374e^-4	0.734	DOWNSTREAM snoRNA:U3:54Aa INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2L	8066813	2L_8066813_SNP [dm3] 2L_8066813_SNP [dm6]	A	G	2.377e^-4	0.734	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
3L	15898098	3L_15898098_SNP [dm3] 3L_15904998_SNP [dm6]	G	A	2.379e^-4	0.734	INTRON sff
3L	20123198	3L_20123198_SNP [dm3] 3L_20130098_SNP [dm6]	T	G	2.386e^-4	0.734	DOWNSTREAM obst-J INTRON gig	TF binding site BDTNP1_TFBS_twi
3R	19427180	3R_19427180_SNP [dm3] 3R_23601458_SNP [dm6]	G	C	2.387e^-4	0.734	UPSTREAM tRNA:CR31143 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14864363	X_14864363_INS [dm3] X_14970330_INS [dm6]	T	TTGAAT	2.391e^-4	0.734	INTRON eag
2L	3236091	2L_3236091_SNP [dm3] 2L_3236091_SNP [dm6]	A	C	2.398e^-4	0.734	INTERGENIC
3L	8580150	3L_8580150_SNP [dm3] 3L_8587050_SNP [dm6]	A	G	2.402e^-4	0.734	INTRON CG43078	TF binding site mE1_TFBS_chinmo
2L	15573675	2L_15573675_SNP [dm3] 2L_15573675_SNP [dm6]	A	T	2.404e^-4	0.734	INTRON kek3
X	2446874	X_2446874_SNP [dm3] X_2552841_SNP [dm6]	G	C	2.405e^-4	0.734	INTRON Pdfr	TF binding site mE1_TFBS_chinmo
2R	17739689	2R_17739689_SNP [dm3] 2R_21852184_SNP [dm6]	T	C	2.412e^-4	0.734	INTERGENIC	TF binding site mE1_TFBS_cad
X	14863668	X_14863668_SNP [dm3] X_14969635_SNP [dm6]	C	G	2.412e^-4	0.734	INTRON eag
X	6323182	X_6323182_SNP [dm3] X_6429149_SNP [dm6]	T	A	2.414e^-4	0.734	INTRON CG42340
X	16520461	X_16520461_SNP [dm3] X_16626428_SNP [dm6]	G	A	2.416e^-4	0.734	INTRON Rok	TF binding site BDTNP1_TFBS_twi
2L	4371265	2L_4371265_SNP [dm3] 2L_4371265_SNP [dm6]	T	C	2.419e^-4	0.734	UPSTREAM Traf4 INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
3R	21409120	3R_21409120_SNP [dm3] 3R_25583398_SNP [dm6]	T	G	2.425e^-4	0.734	UPSTREAM CG4582 INTRON msi
2R	13033739	2R_13033739_SNP [dm3] 2R_17146234_SNP [dm6]	G	A	2.433e^-4	0.734	DOWNSTREAM tRNA:CR30235 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	7280098	3L_7280098_DEL [dm3] 3L_7286998_DEL [dm6]	TTT	T	2.440e^-4	0.734	INTRON unc-13-4A
X	20755098	X_20755098_SNP [dm3] X_20884071_SNP [dm6]	A	T	2.448e^-4	0.734	INTRON shakB
3R	17372739	3R_17372739_SNP [dm3] 3R_21547017_SNP [dm6]	A	G	2.449e^-4	0.734	INTERGENIC
3L	11686765	3L_11686765_SNP [dm3] 3L_11693665_SNP [dm6]	C	G	2.451e^-4	0.734	DOWNSTREAM CG14135 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3427804	X_3427804_INS [dm3] X_3533771_INS [dm6]	T	TATTAACCATTGTT...	2.452e^-4	0.734	INTRON CG32791	TF binding site mE1_TFBS_inv
X	12749031	X_12749031_SNP [dm3] X_12854998_SNP [dm6]	C	A	2.454e^-4	0.734	DOWNSTREAM CG4661 INTRON Pde9
2L	3574190	2L_3574190_SNP [dm3] 2L_3574190_SNP [dm6]	C	T	2.455e^-4	0.734	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	6860071	3R_6860071_SNP [dm3] 3R_11034349_SNP [dm6]	T	C	2.456e^-4	0.734	INTRON CG34114
2R	16921396	2R_16921396_SNP [dm3] 2R_21033891_SNP [dm6]	A	C	2.458e^-4	0.734	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9280891	2L_9280891_SNP [dm3] 2L_9280891_SNP [dm6]	T	C	2.464e^-4	0.735	INTRON Ggamma30A
2R	15891156	2R_15891156_SNP [dm3] 2R_20003651_SNP [dm6]	T	C	2.475e^-4	0.737	UTR_3_PRIME CG16898
2R	17740332	2R_17740332_SNP [dm3] 2R_21852827_SNP [dm6]	C	T	2.484e^-4	0.737	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	589755	3L_589755_SNP [dm3] 3L_589755_SNP [dm6]	C	T	2.488e^-4	0.737	UPSTREAM Kah INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4271824	X_4271824_SNP [dm3] X_4377791_SNP [dm6]	T	G	2.493e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	8182069	X_8182069_SNP [dm3] X_8288036_SNP [dm6]	A	T	2.502e^-4	0.737	INTRON nAChRalpha3
3L	7845372	3L_7845372_SNP [dm3] 3L_7852272_SNP [dm6]	A	T	2.508e^-4	0.737	INTRON Pdp1
3R	20128758	3R_20128758_SNP [dm3] 3R_24303036_SNP [dm6]	G	A	2.516e^-4	0.737	INTRON crb
X	14077556	X_14077556_SNP [dm3] X_14183523_SNP [dm6]	T	A	2.518e^-4	0.737	DOWNSTREAM CG11584 INTERGENIC
3L	9247296	3L_9247296_SNP [dm3] 3L_9254196_SNP [dm6]	A	C	2.518e^-4	0.737	INTRON GluRIB
X	8071623	X_8071623_SNP [dm3] X_8177590_SNP [dm6]	G	C	2.520e^-4	0.737	UPSTREAM slpr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
2R	9286449	2R_9286449_SNP [dm3] 2R_13398944_SNP [dm6]	C	A	2.520e^-4	0.737	SYNONYMOUS_CODING CG4744	TF binding site mE1_TFBS_cad
3R	14196912	3R_14196912_SNP [dm3] 3R_18371190_SNP [dm6]	T	C	2.523e^-4	0.737	INTRON gl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9550550	3L_9550550_SNP [dm3] 3L_9557450_SNP [dm6]	C	T	2.525e^-4	0.737	INTRON CG42673
2R	7033067	2R_7033067_SNP [dm3] 2R_11145562_SNP [dm6]	A	G	2.534e^-4	0.737	UPSTREAM CG13231 INTRON CG13229	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16619032	2L_16619032_SNP [dm3] 2L_16619032_SNP [dm6]	A	C	2.536e^-4	0.737	INTRON CG42389	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	14948752	3R_14948752_SNP [dm3] 3R_19123030_SNP [dm6]	T	C	2.541e^-4	0.737	INTRON CG6040
3R	3760113	3R_3760113_SNP [dm3] 3R_7934391_SNP [dm6]	T	G	2.548e^-4	0.737	UTR_3_PRIME dsx DOWNSTREAM dsx INTRON dsx	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17809823	2R_17809823_SNP [dm3] 2R_21922318_SNP [dm6]	C	T	2.552e^-4	0.737	INTRON Fili
3L	9909647	3L_9909647_SNP [dm3] 3L_9916547_SNP [dm6]	C	T	2.552e^-4	0.737	INTRON CG34356
2L	14833734	2L_14833734_SNP [dm3] 2L_14833734_SNP [dm6]	C	T	2.558e^-4	0.737	INTERGENIC
3L	8911243	3L_8911243_SNP [dm3] 3L_8918143_SNP [dm6]	T	G	2.560e^-4	0.737	INTRON Tsp66E
2L	13747733	2L_13747733_SNP [dm3] 2L_13747733_SNP [dm6]	C	T	2.566e^-4	0.737	UPSTREAM mir-1002 DOWNSTREAM mir-968 INTRON CR44846 & 1 other
2R	17019984	2R_17019984_SNP [dm3] 2R_21132479_SNP [dm6]	C	T	2.571e^-4	0.737	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo
2L	12812522	2L_12812522_SNP [dm3] 2L_12812522_SNP [dm6]	C	T	2.573e^-4	0.737	INTERGENIC
2R	13131340	2R_13131340_SNP [dm3] 2R_17243835_SNP [dm6]	G	A	2.576e^-4	0.737	INTRON mbl	TF binding site mE1_TFBS_inv
3L	22127300	3L_22127300_SNP [dm3] 3L_22134200_SNP [dm6]	C	T	2.582e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	4177766	3L_4177766_SNP [dm3] 3L_4177766_SNP [dm6]	G	A	2.583e^-4	0.737	UTR_5_PRIME Teh4 INTRON CG18675	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24891571	3R_24891571_INS [dm3] 3R_29065849_INS [dm6]	T	TT	2.584e^-4	0.737	INTRON CG11873	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19102648	2R_19102648_SNP [dm3] 2R_23215125_SNP [dm6]	A	C	2.591e^-4	0.737	INTERGENIC
3L	17698275	3L_17698275_SNP [dm3] 3L_17705175_SNP [dm6]	T	G	2.591e^-4	0.737	INTRON Ccn
3L	2478045	3L_2478045_SNP [dm3] 3L_2478045_SNP [dm6]	G	A	2.597e^-4	0.737	SYNONYMOUS_CODING Cyp4d20 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13047454	3L_13047454_SNP [dm3] 3L_13054354_SNP [dm6]	A	C	2.601e^-4	0.737	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	18253711	X_18253711_SNP [dm3] X_18359678_SNP [dm6]	G	A	2.601e^-4	0.737	INTRON CG6106
2R	7651320	2R_7651320_SNP [dm3] 2R_11763815_SNP [dm6]	A	G	2.604e^-4	0.737	INTRON ths
2L	4502132	2L_4502132_SNP [dm3] 2L_4502132_SNP [dm6]	T	A	2.614e^-4	0.738	SPLICE_SITE_REGION dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	22329941	3L_22329941_SNP [dm3] 3L_22336841_SNP [dm6]	T	C	2.623e^-4	0.738	INTRON Ten-m
X	5108448	X_5108448_SNP [dm3] X_5214415_SNP [dm6]	T	C	2.625e^-4	0.738	INTRON CG15465 & 1 other
2L	12703968	2L_12703968_SNP [dm3] 2L_12703968_SNP [dm6]	A	G	2.625e^-4	0.738	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3R	20128799	3R_20128799_SNP [dm3] 3R_24303077_SNP [dm6]	G	C	2.629e^-4	0.738	INTRON crb
2R	9803607	2R_9803607_SNP [dm3] 2R_13916102_SNP [dm6]	T	G	2.637e^-4	0.739	INTRON shot
3L	5772498	3L_5772498_SNP [dm3] 3L_5779398_SNP [dm6]	C	T	2.645e^-4	0.739	SYNONYMOUS_CODING Myt1 UPSTREAM PGRP-LD & 1 other DOWNSTREAM CR45026	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6375241	3L_6375241_SNP [dm3] 3L_6382141_SNP [dm6]	A	T	2.645e^-4	0.739	INTERGENIC
X	4321990	X_4321990_SNP [dm3] X_4427957_SNP [dm6]	A	G	2.654e^-4	0.739	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	7280104	3L_7280104_SNP [dm3] 3L_7287004_SNP [dm6]	T	A	2.660e^-4	0.739	INTRON unc-13-4A
X	11218527	X_11218527_SNP [dm3] X_11324494_SNP [dm6]	A	G	2.667e^-4	0.739	UTR_3_PRIME l_1_10Bb UPSTREAM CG1657	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	5034948	3R_5034948_SNP [dm3] 3R_9209226_SNP [dm6]	T	C	2.678e^-4	0.739	INTRON pum	TF binding site mE1_TFBS_inv
X	12228771	X_12228771_SNP [dm3] X_12334738_SNP [dm6]	A	C	2.680e^-4	0.739	UTR_3_PRIME Ten-a
X	12797576	X_12797576_SNP [dm3] X_12903543_SNP [dm6]	C	T	2.682e^-4	0.739	UPSTREAM CG4407 DOWNSTREAM CG4404 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15885043	2L_15885043_SNP [dm3] 2L_15885043_SNP [dm6]	G	A	2.685e^-4	0.739	INTERGENIC
2L	16062770	2L_16062770_SNP [dm3] 2L_16062770_SNP [dm6]	G	T	2.685e^-4	0.739	INTRON beat-Ia
2L	7060575	2L_7060575_SNP [dm3] 2L_7060575_SNP [dm6]	T	A	2.686e^-4	0.739	SYNONYMOUS_CODING CG31907 INTRON Mnn1
2L	18567309	2L_18567309_SNP [dm3] 2L_18567309_SNP [dm6]	T	G	2.689e^-4	0.739	INTRON Pde11
2L	15990279	2L_15990279_INS [dm3] 2L_15990279_INS [dm6]	C	CAT	2.693e^-4	0.739	DOWNSTREAM CR43412 INTERGENIC
2R	7338833	2R_7338833_SNP [dm3] 2R_11451328_SNP [dm6]	G	A	2.693e^-4	0.739	UTR_3_PRIME qvr UPSTREAM E_Pc_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	10849237	2L_10849237_SNP [dm3] 2L_10849237_SNP [dm6]	C	A	2.699e^-4	0.739	UPSTREAM porin & 1 other INTRON porin
3L	17773344	3L_17773344_SNP [dm3] 3L_17780244_SNP [dm6]	T	C	2.712e^-4	0.739	INTERGENIC
2L	4673493	2L_4673493_SNP [dm3] 2L_4673493_SNP [dm6]	C	A	2.719e^-4	0.739	INTERGENIC
2L	8789442	2L_8789442_SNP [dm3] 2L_8789442_SNP [dm6]	C	G	2.720e^-4	0.739	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4654370	3L_4654370_DEL [dm3] 3L_4654370_DEL [dm6]	AAAGTGGG	A	2.723e^-4	0.739	INTRON axo
3L	4654379	3L_4654379_INS [dm3] 3L_4654379_INS [dm6]	T	TGCATACCCC	2.723e^-4	0.739	INTRON axo
3L	4654381	3L_4654381_SNP [dm3] 3L_4654381_SNP [dm6]	T	C	2.723e^-4	0.739	INTRON axo
3L	1190231	3L_1190231_SNP [dm3] 3L_1190231_SNP [dm6]	C	T	2.725e^-4	0.739	SYNONYMOUS_CODING CG13912 DOWNSTREAM Trh	TF binding site mE1_TFBS_cad
X	20751285	X_20751285_SNP [dm3] X_20880258_SNP [dm6]	A	T	2.729e^-4	0.739	INTRON shakB	transposable element FlyBase
2R	10202943	2R_10202943_SNP [dm3] 2R_14315438_SNP [dm6]	T	C	2.732e^-4	0.739	NON_SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad
3L	18188801	3L_18188801_SNP [dm3] 3L_18195701_SNP [dm6]	C	A	2.738e^-4	0.74	UPSTREAM CR45234 INTERGENIC
3R	26922360	3R_26922360_SNP [dm3] 3R_31096638_SNP [dm6]	G	T	2.748e^-4	0.742	INTRON CG11317
3L	10121972	3L_10121972_SNP [dm3] 3L_10128872_SNP [dm6]	A	T	2.766e^-4	0.745	INTRON dpr6	TF binding site mE1_TFBS_inv
4	1045310	4_1045310_SNP [dm3] 4_1024684_SNP [dm6]	T	A	2.772e^-4	0.745	INTRON PlexA	transposable element FlyBase
3R	11677033	3R_11677033_SNP [dm3] 3R_15851311_SNP [dm6]	T	C	2.784e^-4	0.745	SYNONYMOUS_CODING cv-d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
3L	14570093	3L_14570093_SNP [dm3] 3L_14576993_SNP [dm6]	T	A	2.787e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9014380	3L_9014380_SNP [dm3] 3L_9021280_SNP [dm6]	T	G	2.790e^-4	0.745	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	19427185	3R_19427185_SNP [dm3] 3R_23601463_SNP [dm6]	G	A	2.790e^-4	0.745	UPSTREAM tRNA:CR31143 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	22297089	X_22297089_SNP [dm3] X_22895253_SNP [dm6]	G	T	2.803e^-4	0.745	INTERGENIC
2L	3520474	2L_3520474_SNP [dm3] 2L_3520474_SNP [dm6]	A	G	2.804e^-4	0.745	SYNONYMOUS_CODING CG8851 UPSTREAM CG3213	TF binding site mE1_TFBS_cad
2R	18737409	2R_18737409_SNP [dm3] 2R_22849886_SNP [dm6]	C	T	2.806e^-4	0.745	SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
X	4418322	X_4418322_SNP [dm3] X_4524289_SNP [dm6]	C	T	2.808e^-4	0.745	INTRON CR32773
2L	7455711	2L_7455711_SNP [dm3] 2L_7455711_SNP [dm6]	C	A	2.811e^-4	0.745	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19668356	X_19668356_SNP [dm3] X_19774323_SNP [dm6]	G	T	2.812e^-4	0.745	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	8258233	2L_8258233_SNP [dm3] 2L_8258233_SNP [dm6]	A	G	2.817e^-4	0.745	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	insulator Insulator_Class_II.mE01
2L	8258238	2L_8258238_SNP [dm3] 2L_8258238_SNP [dm6]	T	A	2.817e^-4	0.745	UPSTREAM CG8086 DOWNSTREAM Btk29A & 1 other INTERGENIC	insulator Insulator_Class_II.mE01
3R	1068907	3R_1068907_SNP [dm3] 3R_5243185_SNP [dm6]	C	T	2.820e^-4	0.745	UTR_3_PRIME CG12163 INTRON CG12163
3R	1009109	3R_1009109_SNP [dm3] 3R_5183387_SNP [dm6]	C	T	2.826e^-4	0.745	INTRON cno
X	14076421	X_14076421_SNP [dm3] X_14182388_SNP [dm6]	C	T	2.837e^-4	0.745	SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
2L	11761770	2L_11761770_SNP [dm3] 2L_11761770_SNP [dm6]	G	C	2.839e^-4	0.745	INTERGENIC
3R	24035562	3R_24035562_SNP [dm3] 3R_28209840_SNP [dm6]	G	T	2.840e^-4	0.745	INTRON CG34354	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9905433	3L_9905433_SNP [dm3] 3L_9912333_SNP [dm6]	A	G	2.843e^-4	0.745	INTRON CG34356
2L	15076122	2L_15076122_SNP [dm3] 2L_15076122_SNP [dm6]	A	T	2.846e^-4	0.745	INTRON CG15270
3R	14735925	3R_14735925_SNP [dm3] 3R_18910203_SNP [dm6]	C	T	2.866e^-4	0.745	UTR_3_PRIME EndoA DOWNSTREAM CG14291
2L	10853827	2L_10853827_SNP [dm3] 2L_10853827_SNP [dm6]	T	G	2.867e^-4	0.745	DOWNSTREAM Dnz1 INTRON CG43129	TF binding site mE1_TFBS_chinmo
X	16159111	X_16159111_SNP [dm3] X_16265078_SNP [dm6]	A	T	2.872e^-4	0.745	DOWNSTREAM CG12507 INTERGENIC
X	5618710	X_5618710_SNP [dm3] X_5724677_SNP [dm6]	T	A	2.873e^-4	0.745	INTRON CG32758
2L	7974791	2L_7974791_SNP [dm3] 2L_7974791_SNP [dm6]	A	C	2.875e^-4	0.745	INTRON Snoo
3R	16052755	3R_16052755_SNP [dm3] 3R_20227033_SNP [dm6]	T	A	2.881e^-4	0.745	INTRON Nlg4
2L	5736260	2L_5736260_SNP [dm3] 2L_5736260_SNP [dm6]	G	A	2.881e^-4	0.745	SYNONYMOUS_CODING CG11147 INTRON CG11030	TF binding site mE1_TFBS_HSA
2R	10274725	2R_10274725_SNP [dm3] 2R_14387220_SNP [dm6]	G	A	2.883e^-4	0.745	INTERGENIC
2R	10209519	2R_10209519_DEL [dm3] 2R_14322014_DEL [dm6]	AA	A	2.884e^-4	0.745	INTRON Shroom	TF binding site BDTNP1_TFBS_twi
2R	15317551	2R_15317551_SNP [dm3] 2R_19430046_SNP [dm6]	A	G	2.884e^-4	0.745	SYNONYMOUS_CODING CalpA DOWNSTREAM CalpA & 1 other
2L	7973978	2L_7973978_DEL [dm3] 2L_7973978_DEL [dm6]	TT	T	2.893e^-4	0.745	INTRON Snoo
2L	7973984	2L_7973984_INS [dm3] 2L_7973984_INS [dm6]	G	GGG	2.893e^-4	0.745	INTRON Snoo
2L	11392995	2L_11392995_SNP [dm3] 2L_11392995_SNP [dm6]	C	A	2.897e^-4	0.745	UPSTREAM CR43681 INTERGENIC	regulatory region REDfly_CRMs
X	16253853	X_16253853_SNP [dm3] X_16359820_SNP [dm6]	G	C	2.906e^-4	0.747	NON_SYNONYMOUS_CODING Gpi1 UPSTREAM U2af50	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_zfh1
3L	12737178	3L_12737178_SNP [dm3] 3L_12744078_SNP [dm6]	G	T	2.910e^-4	0.747	SYNONYMOUS_CODING CG32112
2L	15797854	2L_15797854_DEL [dm3] 2L_15797854_DEL [dm6]	TTACCAT	T	2.917e^-4	0.747	INTERGENIC
2L	9030849	2L_9030849_SNP [dm3] 2L_9030849_SNP [dm6]	C	T	2.923e^-4	0.747	INTRON CG9582 & 1 other
3R	14948775	3R_14948775_SNP [dm3] 3R_19123053_SNP [dm6]	A	G	2.924e^-4	0.747	INTRON CG6040
X	8129723	X_8129723_SNP [dm3] X_8235690_SNP [dm6]	G	A	2.933e^-4	0.748	SYNONYMOUS_CODING sdt	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14964931	3L_14964931_INS [dm3] 3L_14971831_INS [dm6]	A	AA	2.952e^-4	0.752	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl
3L	17773349	3L_17773349_SNP [dm3] 3L_17780249_SNP [dm6]	G	C	2.969e^-4	0.753	INTERGENIC
2L	4673507	2L_4673507_SNP [dm3] 2L_4673507_SNP [dm6]	T	C	2.971e^-4	0.753	INTERGENIC
2L	7246077	2L_7246077_SNP [dm3] 2L_7246077_SNP [dm6]	T	C	2.973e^-4	0.753	UPSTREAM Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15167998	2L_15167998_SNP [dm3] 2L_15167998_SNP [dm6]	A	C	2.975e^-4	0.753	INTRON CG4168
X	10920151	X_10920151_SNP [dm3] X_11026118_SNP [dm6]	T	C	2.977e^-4	0.753	INTRON CG42339
2L	2818539	2L_2818539_SNP [dm3] 2L_2818539_SNP [dm6]	C	T	2.988e^-4	0.753	SYNONYMOUS_CODING Duox	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13441747	2L_13441747_SNP [dm3] 2L_13441747_SNP [dm6]	C	G	2.988e^-4	0.753	INTRON CG42784 EXON CR45683
2R	14142331	2R_14142331_SNP [dm3] 2R_18254826_SNP [dm6]	C	A	2.994e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3714180	3L_3714180_SNP [dm3] 3L_3714180_SNP [dm6]	T	C	2.995e^-4	0.753	SYNONYMOUS_CODING CG43089 DOWNSTREAM CG32264
3L	18188803	3L_18188803_SNP [dm3] 3L_18195703_SNP [dm6]	T	C	3.000e^-4	0.753	UPSTREAM CR45234 INTERGENIC
2R	17635773	2R_17635773_SNP [dm3] 2R_21748268_SNP [dm6]	G	T	3.001e^-4	0.753	INTERGENIC
2R	10927894	2R_10927894_SNP [dm3] 2R_15040389_SNP [dm6]	G	T	3.010e^-4	0.753	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10211484	2R_10211484_SNP [dm3] 2R_14323979_SNP [dm6]	A	T	3.016e^-4	0.753	INTRON Shroom
3L	17909009	3L_17909009_SNP [dm3] 3L_17915909_SNP [dm6]	A	T	3.022e^-4	0.753	INTERGENIC	transposable element FlyBase
3L	17909057	3L_17909057_SNP [dm3] 3L_17915957_SNP [dm6]	G	A	3.022e^-4	0.753	INTERGENIC	transposable element FlyBase
3R	15253241	3R_15253241_SNP [dm3] 3R_19427519_SNP [dm6]	C	T	3.028e^-4	0.753	INTRON CG31221
2L	9445495	2L_9445495_SNP [dm3] 2L_9445495_SNP [dm6]	T	C	3.030e^-4	0.753	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11393813	3L_11393813_SNP [dm3] 3L_11400713_SNP [dm6]	T	C	3.039e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4414287	3L_4414287_SNP [dm3] 3L_4414287_SNP [dm6]	T	C	3.040e^-4	0.753	UPSTREAM DOR INTRON DOR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10222026	2R_10222026_SNP [dm3] 2R_14334521_SNP [dm6]	T	A	3.046e^-4	0.753	INTRON Shroom	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17535142	2L_17535142_SNP [dm3] 2L_17535142_SNP [dm6]	G	C	3.058e^-4	0.753	INTERGENIC
X	19668575	X_19668575_SNP [dm3] X_19774542_SNP [dm6]	T	C	3.059e^-4	0.753	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	7739189	3R_7739189_SNP [dm3] 3R_11913467_SNP [dm6]	C	T	3.068e^-4	0.753	INTRON Cad87A
2L	10076646	2L_10076646_SNP [dm3] 2L_10076646_SNP [dm6]	G	A	3.071e^-4	0.753	INTRON CG44153	TF binding site mE1_TFBS_cad
3R	1024056	3R_1024056_SNP [dm3] 3R_5198334_SNP [dm6]	A	C	3.080e^-4	0.753	UPSTREAM cno INTRON cno	TF binding site mE1_TFBS_HSA
2L	12555156	2L_12555156_SNP [dm3] 2L_12555156_SNP [dm6]	T	C	3.080e^-4	0.753	INTERGENIC
3R	11000086	3R_11000086_DEL [dm3] 3R_15174364_DEL [dm6]	AG	A	3.086e^-4	0.753	DOWNSTREAM Mf INTRON Mf & 1 other
3L	15482967	3L_15482967_SNP [dm3] 3L_15489867_SNP [dm6]	C	T	3.095e^-4	0.753	INTERGENIC
3R	10872931	3R_10872931_DEL [dm3] 3R_15047209_DEL [dm6]	AA	G	3.096e^-4	0.753	INTERGENIC
2L	2836887	2L_2836887_SNP [dm3] 2L_2836887_SNP [dm6]	C	T	3.096e^-4	0.753	INTRON CG3119
2L	11201815	2L_11201815_SNP [dm3] 2L_11201815_SNP [dm6]	C	T	3.100e^-4	0.753	INTRON Ca-beta
2L	10960295	2L_10960295_SNP [dm3] 2L_10960295_SNP [dm6]	T	A	3.103e^-4	0.753	INTRON dpr2
3R	18790418	3R_18790418_SNP [dm3] 3R_22964696_SNP [dm6]	T	C	3.105e^-4	0.753	UPSTREAM CR43655 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15991352	2L_15991352_SNP [dm3] 2L_15991352_SNP [dm6]	G	A	3.107e^-4	0.753	INTERGENIC
3L	4710349	3L_4710349_SNP [dm3] 3L_4710349_SNP [dm6]	A	G	3.111e^-4	0.753	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4710350	3L_4710350_DEL [dm3] 3L_4710350_DEL [dm6]	TAGAT	T	3.111e^-4	0.753	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4710363	3L_4710363_SNP [dm3] 3L_4710363_SNP [dm6]	G	A	3.111e^-4	0.753	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11929196	2L_11929196_SNP [dm3] 2L_11929196_SNP [dm6]	A	C	3.120e^-4	0.753	UPSTREAM Pde1c INTERGENIC
3L	1184558	3L_1184558_SNP [dm3] 3L_1184558_SNP [dm6]	C	A	3.126e^-4	0.753	INTERGENIC
2L	7812417	2L_7812417_SNP [dm3] 2L_7812417_SNP [dm6]	C	A	3.127e^-4	0.753	INTRON LanB1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16426808	2R_16426808_SNP [dm3] 2R_20539303_SNP [dm6]	C	G	3.132e^-4	0.753	UTR_5_PRIME CG13427 DOWNSTREAM CG13428	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6816570	3L_6816570_SNP [dm3] 3L_6823470_SNP [dm6]	T	C	3.134e^-4	0.753	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21643201	3R_21643201_SNP [dm3] 3R_25817479_SNP [dm6]	T	C	3.135e^-4	0.753	DOWNSTREAM CG14354 INTERGENIC
2L	7973971	2L_7973971_SNP [dm3] 2L_7973971_SNP [dm6]	C	A	3.137e^-4	0.753	INTRON Snoo
X	18260224	X_18260224_SNP [dm3] X_18366191_SNP [dm6]	A	G	3.141e^-4	0.753	UPSTREAM CrebB INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15797275	2R_15797275_SNP [dm3] 2R_19909770_SNP [dm6]	C	G	3.149e^-4	0.753	DOWNSTREAM CR44573 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11765623	2R_11765623_SNP [dm3] 2R_15878118_SNP [dm6]	T	A	3.152e^-4	0.753	INTRON sli
2R	11081590	2R_11081590_SNP [dm3] 2R_15194085_SNP [dm6]	A	C	3.153e^-4	0.753	UTR_3_PRIME CG43829 UPSTREAM Sfp51E
3L	14569245	3L_14569245_SNP [dm3] 3L_14576145_SNP [dm6]	A	C	3.153e^-4	0.753	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10208973	2R_10208973_SNP [dm3] 2R_14321468_SNP [dm6]	A	T	3.163e^-4	0.754	INTRON Shroom	TF binding site mE1_TFBS_cad
3R	25935459	3R_25935459_SNP [dm3] 3R_30109737_SNP [dm6]	C	T	3.168e^-4	0.754	SYNONYMOUS_CODING sima INTRON sima	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2828328	2L_2828328_SNP [dm3] 2L_2828328_SNP [dm6]	G	A	3.169e^-4	0.754	INTRON Duox
3R	26419982	3R_26419982_SNP [dm3] 3R_30594260_SNP [dm6]	A	G	3.176e^-4	0.755	INTRON CG2246
3R	25929573	3R_25929573_SNP [dm3] 3R_30103851_SNP [dm6]	G	A	3.192e^-4	0.757	INTRON sima
3R	15416641	3R_15416641_SNP [dm3] 3R_19590919_SNP [dm6]	T	A	3.194e^-4	0.757	INTRON Dys	TF binding site mE1_TFBS_cad
3L	14570091	3L_14570091_SNP [dm3] 3L_14576991_SNP [dm6]	C	G	3.199e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4659920	2L_4659920_SNP [dm3] 2L_4659920_SNP [dm6]	G	C	3.205e^-4	0.758	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10486881	2L_10486881_SNP [dm3] 2L_10486881_SNP [dm6]	A	G	3.210e^-4	0.758	SYNONYMOUS_CODING CG7456	TF binding site mE1_TFBS_inv
2L	17512463	2L_17512463_SNP [dm3] 2L_17512463_SNP [dm6]	T	G	3.223e^-4	0.76	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_chinmo
2L	14833847	2L_14833847_DEL [dm3] 2L_14833847_DEL [dm6]	TTTATATGCATTAATCATCG...	T	3.237e^-4	0.763	INTERGENIC
2L	1057236	2L_1057236_SNP [dm3] 2L_1057236_SNP [dm6]	G	A	3.245e^-4	0.763	INTRON S	TF binding site mE1_TFBS_sens
3L	12836005	3L_12836005_SNP [dm3] 3L_12842905_SNP [dm6]	C	A	3.253e^-4	0.763	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	12994399	X_12994399_SNP [dm3] X_13100366_SNP [dm6]	T	C	3.262e^-4	0.763	INTRON CG43313
3R	26297414	3R_26297414_SNP [dm3] 3R_30471692_SNP [dm6]	C	A	3.262e^-4	0.763	INTRON PH4alphaEFB
2R	7528120	2R_7528120_SNP [dm3] 2R_11640615_SNP [dm6]	C	T	3.271e^-4	0.763	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	5386569	3R_5386569_SNP [dm3] 3R_9560847_SNP [dm6]	G	T	3.273e^-4	0.763	DOWNSTREAM CG9393 INTRON MBD-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	17397527	2L_17397527_SNP [dm3] 2L_17397527_SNP [dm6]	A	G	3.285e^-4	0.763	INTRON CLIP-190
X	19550326	X_19550326_SNP [dm3] X_19656293_SNP [dm6]	G	A	3.291e^-4	0.763	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	10901909	3R_10901909_INS [dm3] 3R_15076187_INS [dm6]	G	GAAT	3.296e^-4	0.763	UTR_5_PRIME dpr9
3L	11594175	3L_11594175_SNP [dm3] 3L_11601075_SNP [dm6]	A	G	3.300e^-4	0.763	UPSTREAM CG7368 INTRON CG7368
3L	9733960	3L_9733960_SNP [dm3] 3L_9740860_SNP [dm6]	C	T	3.302e^-4	0.763	UPSTREAM CR44348 INTRON CG42268
X	15860204	X_15860204_SNP [dm3] X_15966171_SNP [dm6]	G	C	3.307e^-4	0.763	UPSTREAM mir-927 INTRON mmd
3L	6744783	3L_6744783_SNP [dm3] 3L_6751683_SNP [dm6]	T	C	3.310e^-4	0.763	INTRON velo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8728842	2R_8728842_SNP [dm3] 2R_12841337_SNP [dm6]	C	T	3.325e^-4	0.763	SYNONYMOUS_CODING Cyp9h1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15991353	2L_15991353_SNP [dm3] 2L_15991353_SNP [dm6]	T	A	3.326e^-4	0.763	INTERGENIC
3L	10669992	3L_10669992_SNP [dm3] 3L_10676892_SNP [dm6]	T	G	3.328e^-4	0.763	INTRON simj	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4248450	3R_4248450_SNP [dm3] 3R_8422728_SNP [dm6]	G	A	3.328e^-4	0.763	INTRON CG45263
X	16579012	X_16579012_SNP [dm3] X_16684979_SNP [dm6]	A	G	3.331e^-4	0.763	UTR_3_PRIME Sep4
2R	18938603	2R_18938603_SNP [dm3] 2R_23051080_SNP [dm6]	A	T	3.331e^-4	0.763	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	10920111	X_10920111_SNP [dm3] X_11026078_SNP [dm6]	C	T	3.334e^-4	0.763	INTRON CG42339
3R	11452704	3R_11452704_SNP [dm3] 3R_15626982_SNP [dm6]	C	T	3.336e^-4	0.763	INTERGENIC
3R	1028334	3R_1028334_SNP [dm3] 3R_5202612_SNP [dm6]	A	C	3.350e^-4	0.763	INTRON cno
3L	14242342	3L_14242342_DEL [dm3] 3L_14249242_DEL [dm6]	TCATTCTA	T	3.351e^-4	0.763	INTERGENIC
3L	11269143	3L_11269143_SNP [dm3] 3L_11276043_SNP [dm6]	G	A	3.352e^-4	0.763	INTERGENIC
3R	26421089	3R_26421089_SNP [dm3] 3R_30595367_SNP [dm6]	A	G	3.353e^-4	0.763	INTRON CG2246
2R	10609276	2R_10609276_SNP [dm3] 2R_14721771_SNP [dm6]	C	T	3.355e^-4	0.763	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10214956	2R_10214956_SNP [dm3] 2R_14327451_SNP [dm6]	G	A	3.355e^-4	0.763	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26419983	3R_26419983_SNP [dm3] 3R_30594261_SNP [dm6]	A	T	3.355e^-4	0.763	INTRON CG2246
2R	9781071	2R_9781071_SNP [dm3] 2R_13893566_SNP [dm6]	G	C	3.362e^-4	0.763	SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10112003	3L_10112003_SNP [dm3] 3L_10118903_SNP [dm6]	C	T	3.362e^-4	0.763	INTRON dpr6
2L	16619019	2L_16619019_SNP [dm3] 2L_16619019_SNP [dm6]	T	A	3.371e^-4	0.765	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
3L	10097946	3L_10097946_SNP [dm3] 3L_10104846_SNP [dm6]	G	T	3.380e^-4	0.765	INTRON dpr6
3R	10216370	3R_10216370_SNP [dm3] 3R_14390648_SNP [dm6]	A	G	3.385e^-4	0.765	INTERGENIC
2R	2482348	2R_2482348_SNP [dm3] 2R_6594843_SNP [dm6]	G	T	3.395e^-4	0.765	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	5385595	X_5385595_SNP [dm3] X_5491562_SNP [dm6]	C	T	3.396e^-4	0.765	SYNONYMOUS_CODING SPR	TF binding site mE1_TFBS_chinmo
X	21048590	X_21048590_SNP [dm3] X_21177563_SNP [dm6]	C	T	3.398e^-4	0.765	INTERGENIC	transposable element FlyBase
X	16655738	X_16655738_SNP [dm3] X_16761705_SNP [dm6]	G	T	3.399e^-4	0.765	INTRON if
X	19549624	X_19549624_SNP [dm3] X_19655591_SNP [dm6]	G	A	3.408e^-4	0.765	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_chinmo
X	20005279	X_20005279_SNP [dm3] X_20111246_SNP [dm6]	G	C	3.411e^-4	0.765	UPSTREAM karr INTERGENIC	transposable element FlyBase
2R	7719578	2R_7719578_SNP [dm3] 2R_11832073_SNP [dm6]	A	G	3.414e^-4	0.765	INTRON Sobp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19906003	3R_19906003_SNP [dm3] 3R_24080281_SNP [dm6]	T	A	3.416e^-4	0.765	INTRON 4EHP
2L	3526459	2L_3526459_SNP [dm3] 2L_3526459_SNP [dm6]	T	C	3.416e^-4	0.765	SYNONYMOUS_CODING CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA
2L	17350053	2L_17350053_SNP [dm3] 2L_17350053_SNP [dm6]	T	C	3.421e^-4	0.765	INTERGENIC
X	12739308	X_12739308_SNP [dm3] X_12845275_SNP [dm6]	C	T	3.436e^-4	0.765	INTRON Pde9
3L	17893879	3L_17893879_SNP [dm3] 3L_17900779_SNP [dm6]	G	A	3.436e^-4	0.765	SYNONYMOUS_CODING Prestin
X	6297192	X_6297192_SNP [dm3] X_6403159_SNP [dm6]	G	A	3.442e^-4	0.765	INTERGENIC
2L	17421603	2L_17421603_SNP [dm3] 2L_17421603_SNP [dm6]	G	A	3.444e^-4	0.765	INTRON Dif
X	4290759	X_4290759_SNP [dm3] X_4396726_SNP [dm6]	C	T	3.446e^-4	0.765	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12387354	2L_12387354_SNP [dm3] 2L_12387354_SNP [dm6]	T	A	3.453e^-4	0.765	INTRON bru-2
2L	12387355	2L_12387355_SNP [dm3] 2L_12387355_SNP [dm6]	C	T	3.453e^-4	0.765	INTRON bru-2
X	16023566	X_16023566_SNP [dm3] X_16129533_SNP [dm6]	A	T	3.456e^-4	0.765	INTRON disco-r
3L	16720869	3L_16720869_SNP [dm3] 3L_16727769_SNP [dm6]	G	A	3.468e^-4	0.766	SYNONYMOUS_CODING PGRP-SB1 DOWNSTREAM PGRP-SB2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19485945	3R_19485945_SNP [dm3] 3R_23660223_SNP [dm6]	G	T	3.470e^-4	0.766	INTRON CG31145
3L	12853414	3L_12853414_SNP [dm3] 3L_12860314_SNP [dm6]	A	G	3.473e^-4	0.766	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
3L	9905137	3L_9905137_SNP [dm3] 3L_9912037_SNP [dm6]	C	A	3.476e^-4	0.766	INTRON CG34356
X	6408454	X_6408454_SNP [dm3] X_6514421_SNP [dm6]	G	A	3.484e^-4	0.766	INTRON CG42340
2R	7641239	2R_7641239_SNP [dm3] 2R_11753734_SNP [dm6]	A	G	3.485e^-4	0.766	INTERGENIC
X	8147887	X_8147887_SNP [dm3] X_8253854_SNP [dm6]	C	T	3.500e^-4	0.766	INTRON CG1632
2R	12863477	2R_12863477_SNP [dm3] 2R_16975972_SNP [dm6]	G	A	3.505e^-4	0.766	INTRON Cbp53E
X	12795062	X_12795062_SNP [dm3] X_12901029_SNP [dm6]	A	T	3.512e^-4	0.766	UTR_5_PRIME CG32649 DOWNSTREAM CG4407	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	4276322	X_4276322_SNP [dm3] X_4382289_SNP [dm6]	C	T	3.517e^-4	0.766	UTR_3_PRIME CG12688
2L	8385672	2L_8385672_SNP [dm3] 2L_8385672_SNP [dm6]	C	T	3.538e^-4	0.766	UPSTREAM CG13384 INTRON CG13384	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24722062	3R_24722062_SNP [dm3] 3R_28896340_SNP [dm6]	T	G	3.540e^-4	0.766	INTRON Doa
3R	13785416	3R_13785416_SNP [dm3] 3R_17959694_SNP [dm6]	T	C	3.542e^-4	0.766	INTRON cpo
2R	10214982	2R_10214982_SNP [dm3] 2R_14327477_SNP [dm6]	A	G	3.542e^-4	0.766	INTRON Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10144015	2L_10144015_SNP [dm3] 2L_10144015_SNP [dm6]	G	C	3.544e^-4	0.766	UPSTREAM CG4839 INTRON CG44153
X	8154132	X_8154132_SNP [dm3] X_8260099_SNP [dm6]	G	A	3.550e^-4	0.766	INTRON CG1632
3L	11334761	3L_11334761_SNP [dm3] 3L_11341661_SNP [dm6]	C	A	3.551e^-4	0.766	UPSTREAM CR45250 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	16798106	X_16798106_SNP [dm3] X_16904073_SNP [dm6]	T	C	3.558e^-4	0.766	EXON CR44754
X	17663659	X_17663659_SNP [dm3] X_17769626_SNP [dm6]	G	A	3.562e^-4	0.766	INTRON unc-4	TF binding site BDTNP1_TFBS_dl
2L	8903702	2L_8903702_SNP [dm3] 2L_8903702_SNP [dm6]	T	A	3.566e^-4	0.766	INTRON CG34398
2L	7857694	2L_7857694_SNP [dm3] 2L_7857694_SNP [dm6]	C	T	3.570e^-4	0.766	SYNONYMOUS_CODING lectin-28C DOWNSTREAM TwdlE
X	8959169	X_8959169_SNP [dm3] X_9065136_SNP [dm6]	G	C	3.575e^-4	0.766	INTRON CG15365	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17734819	2R_17734819_INS [dm3] 2R_21847314_INS [dm6]	A	ATTTAAGACAAA...	3.582e^-4	0.766	INTERGENIC
2L	5160089	2L_5160089_SNP [dm3] 2L_5160089_SNP [dm6]	T	G	3.597e^-4	0.766	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_sens
2L	15076130	2L_15076130_SNP [dm3] 2L_15076130_SNP [dm6]	T	C	3.602e^-4	0.766	INTRON CG15270
3R	24194442	3R_24194442_SNP [dm3] 3R_28368720_SNP [dm6]	C	T	3.604e^-4	0.766	INTERGENIC
3L	14714030	3L_14714030_SNP [dm3] 3L_14720930_SNP [dm6]	T	C	3.606e^-4	0.766	INTRON ome
3L	9550554	3L_9550554_SNP [dm3] 3L_9557454_SNP [dm6]	A	G	3.609e^-4	0.766	INTRON CG42673
X	14076914	X_14076914_SNP [dm3] X_14182881_SNP [dm6]	A	G	3.611e^-4	0.766	NON_SYNONYMOUS_CODING CG11584	TF binding site mE1_TFBS_chinmo
X	16108522	X_16108522_DEL [dm3] X_16214489_DEL [dm6]	CA	C	3.633e^-4	0.766	INTRON disco	TF binding site mE1_TFBS_HSA
3L	1382066	3L_1382066_SNP [dm3] 3L_1382066_SNP [dm6]	G	A	3.633e^-4	0.766	INTRON Ptp61F & 1 other
2R	14136685	2R_14136685_SNP [dm3] 2R_18249180_SNP [dm6]	A	G	3.638e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	17350043	2L_17350043_SNP [dm3] 2L_17350043_SNP [dm6]	C	A	3.639e^-4	0.766	INTERGENIC
3L	17893882	3L_17893882_SNP [dm3] 3L_17900782_SNP [dm6]	C	A	3.640e^-4	0.766	SYNONYMOUS_CODING Prestin
3L	4710383	3L_4710383_DEL [dm3] 3L_4710383_DEL [dm6]	CAATTCAATTATTC...	C	3.648e^-4	0.766	UPSTREAM CG13712 INTRON RhoGEF64C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8253674	3L_8253674_SNP [dm3] 3L_8260574_SNP [dm6]	T	G	3.648e^-4	0.766	INTRON Dscam4
X	14865109	X_14865109_SNP [dm3] X_14971076_SNP [dm6]	C	T	3.651e^-4	0.766	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	1961931	3L_1961931_SNP [dm3] 3L_1961931_SNP [dm6]	A	G	3.654e^-4	0.766	SYNONYMOUS_CODING mv
2R	10211064	2R_10211064_SNP [dm3] 2R_14323559_SNP [dm6]	T	C	3.657e^-4	0.766	INTRON Shroom
X	14075980	X_14075980_DEL [dm3] X_14181947_DEL [dm6]	GCTG	G	3.660e^-4	0.766	CODON_DELETION CG11584	TF binding site mE1_TFBS_chinmo
3L	14568570	3L_14568570_SNP [dm3] 3L_14575470_SNP [dm6]	C	T	3.663e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
3L	11069413	3L_11069413_SNP [dm3] 3L_11076313_SNP [dm6]	A	G	3.672e^-4	0.766	SYNONYMOUS_CODING CG7839	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16956668	X_16956668_DEL [dm3] X_17062635_DEL [dm6]	AA	T	3.676e^-4	0.766	INTRON CG45002
3R	14735967	3R_14735967_SNP [dm3] 3R_18910245_SNP [dm6]	A	T	3.680e^-4	0.766	UTR_3_PRIME EndoA DOWNSTREAM CG14291
2L	8960507	2L_8960507_SNP [dm3] 2L_8960507_SNP [dm6]	G	A	3.682e^-4	0.766	SYNONYMOUS_CODING CG9525
X	20598715	X_20598715_INS [dm3] X_20727688_INS [dm6]	A	AACACCAT	3.683e^-4	0.766	INTERGENIC
2R	14955093	2R_14955093_SNP [dm3] 2R_19067588_SNP [dm6]	A	T	3.689e^-4	0.766	INTRON 5-HT1A
3L	15888691	3L_15888691_DEL [dm3] 3L_15895591_DEL [dm6]	TC	T	3.689e^-4	0.766	INTRON pHCl
3R	19485980	3R_19485980_SNP [dm3] 3R_23660258_SNP [dm6]	A	G	3.700e^-4	0.766	INTRON CG31145
X	14863131	X_14863131_SNP [dm3] X_14969098_SNP [dm6]	A	G	3.701e^-4	0.766	INTRON eag
2L	3527277	2L_3527277_SNP [dm3] 2L_3527277_SNP [dm6]	A	G	3.701e^-4	0.766	UTR_3_PRIME CG8852 DOWNSTREAM Spindly	TF binding site mE1_TFBS_HSA
X	12795454	X_12795454_SNP [dm3] X_12901421_SNP [dm6]	T	C	3.705e^-4	0.766	UTR_3_PRIME CG4407 UPSTREAM CG32649	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	6408252	X_6408252_SNP [dm3] X_6514219_SNP [dm6]	T	C	3.721e^-4	0.766	INTRON CG42340
2L	1034104	2L_1034104_SNP [dm3] 2L_1034104_SNP [dm6]	G	T	3.721e^-4	0.766	NON_SYNONYMOUS_CODING IA-2
X	14763162	X_14763162_SNP [dm3] X_14869129_SNP [dm6]	A	C	3.727e^-4	0.766	INTRON Flo2 & 1 other
2L	10960233	2L_10960233_SNP [dm3] 2L_10960233_SNP [dm6]	T	G	3.728e^-4	0.766	INTRON dpr2
3R	24200084	3R_24200084_SNP [dm3] 3R_28374362_SNP [dm6]	C	G	3.733e^-4	0.766	INTERGENIC
X	10920124	X_10920124_SNP [dm3] X_11026091_SNP [dm6]	T	A	3.733e^-4	0.766	INTRON CG42339
3L	6874037	3L_6874037_SNP [dm3] 3L_6880937_SNP [dm6]	G	T	3.734e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	995440	3R_995440_SNP [dm3] 3R_5169718_SNP [dm6]	G	A	3.736e^-4	0.766	UTR_3_PRIME dpr16
3R	9659953	3R_9659953_SNP [dm3] 3R_13834231_SNP [dm6]	T	A	3.744e^-4	0.766	UTR_3_PRIME Nsf2 DOWNSTREAM Nsf2	TF binding site mE1_TFBS_bab1
3R	989087	3R_989087_SNP [dm3] 3R_5163365_SNP [dm6]	G	T	3.748e^-4	0.766	INTRON dpr16
3L	11451414	3L_11451414_SNP [dm3] 3L_11458314_SNP [dm6]	T	C	3.752e^-4	0.766	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3R	24721833	3R_24721833_SNP [dm3] 3R_28896111_SNP [dm6]	A	G	3.772e^-4	0.766	INTRON Doa
3L	18615202	3L_18615202_SNP [dm3] 3L_18622102_SNP [dm6]	C	G	3.773e^-4	0.766	START_GAINED not UTR_5_PRIME not UPSTREAM bora	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	17243971	X_17243971_SNP [dm3] X_17349938_SNP [dm6]	C	T	3.780e^-4	0.766	INTERGENIC
3L	11695068	3L_11695068_INS [dm3] 3L_11701968_INS [dm6]	C	CCCCTCAAC	3.785e^-4	0.766	INTRON CG11658
X	3417537	X_3417537_SNP [dm3] X_3523504_SNP [dm6]	T	C	3.785e^-4	0.766	DOWNSTREAM CR44999 INTRON CG32791
3R	24404245	3R_24404245_SNP [dm3] 3R_28578523_SNP [dm6]	A	G	3.786e^-4	0.766	INTERGENIC	regulatory region REDfly_CRMs
2R	7880201	2R_7880201_SNP [dm3] 2R_11992696_SNP [dm6]	T	G	3.793e^-4	0.766	DOWNSTREAM CG8298 EXON CR45319
3R	27232146	3R_27232146_SNP [dm3] 3R_31406424_SNP [dm6]	T	A	3.797e^-4	0.766	UPSTREAM CG11337 INTRON Gprk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	6163922	2R_6163922_SNP [dm3] 2R_10276417_SNP [dm6]	G	T	3.803e^-4	0.766	START_GAINED CAP UTR_5_PRIME CAP INTRON CAP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	7950062	2L_7950062_INS [dm3] 2L_7950062_INS [dm6]	T	TC	3.804e^-4	0.766	INTRON Snoo
3L	12835970	3L_12835970_INS [dm3] 3L_12842870_INS [dm6]	A	AGA	3.818e^-4	0.766	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	4076183	X_4076183_SNP [dm3] X_4182150_SNP [dm6]	T	A	3.820e^-4	0.766	INTRON Fas2
3R	6069486	3R_6069486_SNP [dm3] 3R_10243764_SNP [dm6]	T	G	3.833e^-4	0.766	NON_SYNONYMOUS_CODING CG42795
3R	24687132	3R_24687132_SNP [dm3] 3R_28861410_SNP [dm6]	C	T	3.835e^-4	0.766	INTRON spg	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11451413	3L_11451413_SNP [dm3] 3L_11458313_SNP [dm6]	C	T	3.838e^-4	0.766	UTR_5_PRIME CG12289 UPSTREAM CG7551	TF binding site BDTNP1_TFBS_sna
3L	1697267	3L_1697267_SNP [dm3] 3L_1697267_SNP [dm6]	C	A	3.840e^-4	0.766	DOWNSTREAM CG12011 INTRON CG7991
3L	14569306	3L_14569306_SNP [dm3] 3L_14576206_SNP [dm6]	A	G	3.841e^-4	0.766	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	17716176	3L_17716176_SNP [dm3] 3L_17723076_SNP [dm6]	T	G	3.844e^-4	0.766	DOWNSTREAM CG6052 INTRON Ccn
2L	13291809	2L_13291809_SNP [dm3] 2L_13291809_SNP [dm6]	G	A	3.846e^-4	0.766	INTRON CG31729
2L	8066816	2L_8066816_SNP [dm3] 2L_8066816_SNP [dm6]	C	A	3.853e^-4	0.766	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad
3R	6865437	3R_6865437_SNP [dm3] 3R_11039715_SNP [dm6]	T	G	3.854e^-4	0.766	INTRON CG34114	TF binding site mE1_TFBS_inv
3L	9910431	3L_9910431_SNP [dm3] 3L_9917331_SNP [dm6]	C	T	3.855e^-4	0.766	INTRON CG34356
3L	14572741	3L_14572741_SNP [dm3] 3L_14579641_SNP [dm6]	T	A	3.856e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10093553	3L_10093553_SNP [dm3] 3L_10100453_SNP [dm6]	G	C	3.857e^-4	0.766	NON_SYNONYMOUS_CODING CG42826 INTRON dpr6
3R	13785405	3R_13785405_SNP [dm3] 3R_17959683_SNP [dm6]	C	T	3.864e^-4	0.766	INTRON cpo
3L	18385564	3L_18385564_SNP [dm3] 3L_18392464_SNP [dm6]	T	C	3.882e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	7111957	3R_7111957_SNP [dm3] 3R_11286235_SNP [dm6]	G	C	3.882e^-4	0.766	INTRON CR31386
3L	11219433	3L_11219433_SNP [dm3] 3L_11226333_SNP [dm6]	G	A	3.887e^-4	0.766	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13208431	2L_13208431_SNP [dm3] 2L_13208431_SNP [dm6]	A	C	3.896e^-4	0.766	SYNONYMOUS_CODING Pect
3L	17723143	3L_17723143_SNP [dm3] 3L_17730043_SNP [dm6]	C	T	3.916e^-4	0.766	UPSTREAM CG6052 INTRON Ccn
3R	995453	3R_995453_SNP [dm3] 3R_5169731_SNP [dm6]	C	A	3.918e^-4	0.766	UTR_3_PRIME dpr16
3L	4628906	3L_4628906_SNP [dm3] 3L_4628906_SNP [dm6]	A	C	3.919e^-4	0.766	DOWNSTREAM axo INTRON Rpd3	TF binding site mE1_TFBS_sens
2L	2430940	2L_2430940_SNP [dm3] 2L_2430940_SNP [dm6]	T	C	3.932e^-4	0.766	INTRON dpp
3L	12853231	3L_12853231_SNP [dm3] 3L_12860131_SNP [dm6]	T	C	3.938e^-4	0.766	SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20096808	3L_20096808_SNP [dm3] 3L_20103708_SNP [dm6]	C	T	3.938e^-4	0.766	UTR_5_PRIME CG14186 UPSTREAM CR44679	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	2422346	2L_2422346_SNP [dm3] 2L_2422346_SNP [dm6]	A	T	3.943e^-4	0.766	SYNONYMOUS_CODING CG9886	TF binding site mE1_TFBS_chinmo
3L	2352837	3L_2352837_SNP [dm3] 3L_2352837_SNP [dm6]	G	T	3.943e^-4	0.766	INTERGENIC
2L	12388222	2L_12388222_SNP [dm3] 2L_12388222_SNP [dm6]	G	A	3.951e^-4	0.766	INTRON bru-2
X	15424641	X_15424641_SNP [dm3] X_15530608_SNP [dm6]	A	G	3.959e^-4	0.766	INTRON Ac13E
X	15424643	X_15424643_INS [dm3] X_15530610_INS [dm6]	A	AT	3.959e^-4	0.766	INTRON Ac13E
X	15424647	X_15424647_SNP [dm3] X_15530614_SNP [dm6]	C	T	3.959e^-4	0.766	INTRON Ac13E
X	15424650	X_15424650_SNP [dm3] X_15530617_SNP [dm6]	A	T	3.959e^-4	0.766	INTRON Ac13E
X	15424673	X_15424673_SNP [dm3] X_15530640_SNP [dm6]	C	T	3.959e^-4	0.766	INTRON Ac13E
2R	19287983	2R_19287983_SNP [dm3] 2R_23400460_SNP [dm6]	C	T	3.968e^-4	0.766	SYNONYMOUS_CODING CG3520	TF binding site mE1_TFBS_chinmo
2L	12385828	2L_12385828_DEL [dm3] 2L_12385828_DEL [dm6]	AA	A	3.972e^-4	0.766	INTRON bru-2
2L	14833726	2L_14833726_SNP [dm3] 2L_14833726_SNP [dm6]	C	A	3.980e^-4	0.766	INTERGENIC
2L	10685153	2L_10685153_SNP [dm3] 2L_10685153_SNP [dm6]	T	C	3.982e^-4	0.766	UPSTREAM CG7299 DOWNSTREAM CG7296 INTERGENIC
X	8961588	X_8961588_SNP [dm3] X_9067555_SNP [dm6]	C	T	3.982e^-4	0.766	UTR_5_PRIME CG15365
X	16171795	X_16171795_SNP [dm3] X_16277762_SNP [dm6]	A	G	3.987e^-4	0.766	UPSTREAM eas DOWNSTREAM Prosalpha4 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	16173540	X_16173540_SNP [dm3] X_16279507_SNP [dm6]	A	C	3.987e^-4	0.766	UTR_5_PRIME eas INTRON eas	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	9022687	3R_9022687_DEL [dm3] 3R_13196965_DEL [dm6]	GA	G	3.988e^-4	0.766	INTERGENIC
2L	7973965	2L_7973965_SNP [dm3] 2L_7973965_SNP [dm6]	T	C	3.999e^-4	0.766	INTRON Snoo
X	17764479	X_17764479_SNP [dm3] X_17870446_SNP [dm6]	G	A	4.003e^-4	0.766	INTRON mnb	TF binding site BDTNP1_TFBS_da
X	17764485	X_17764485_SNP [dm3] X_17870452_SNP [dm6]	A	C	4.003e^-4	0.766	INTRON mnb	TF binding site BDTNP1_TFBS_da
2L	6408720	2L_6408720_SNP [dm3] 2L_6408720_SNP [dm6]	T	A	4.007e^-4	0.766	INTRON CG42368	TF binding site mE1_TFBS_inv
2R	7022251	2R_7022251_DEL [dm3] 2R_11134746_DEL [dm6]	GC	G	4.008e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	20598688	X_20598688_SNP [dm3] X_20727661_SNP [dm6]	C	A	4.011e^-4	0.766	INTERGENIC
3R	25871921	3R_25871921_SNP [dm3] 3R_30046199_SNP [dm6]	T	C	4.011e^-4	0.766	UPSTREAM CG7943 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	21643193	3R_21643193_DEL [dm3] 3R_25817471_DEL [dm6]	TGCAAGA	T	4.023e^-4	0.766	DOWNSTREAM CG14354 INTERGENIC
X	14346658	X_14346658_SNP [dm3] X_14452625_SNP [dm6]	T	G	4.026e^-4	0.766	INTRON dpr8
X	17623279	X_17623279_SNP [dm3] X_17729246_SNP [dm6]	C	A	4.031e^-4	0.766	INTRON CG42684
2L	12813157	2L_12813157_SNP [dm3] 2L_12813157_SNP [dm6]	C	T	4.033e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7799176	3L_7799176_SNP [dm3] 3L_7806076_SNP [dm6]	T	C	4.034e^-4	0.766	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
2R	19721302	2R_19721302_SNP [dm3] 2R_23833779_SNP [dm6]	G	A	4.038e^-4	0.766	INTRON CG5549	TF binding site mE1_TFBS_chinmo
3L	23054575	3L_23054575_SNP [dm3] 3L_23061475_SNP [dm6]	C	T	4.046e^-4	0.766	INTERGENIC
2L	3988452	2L_3988452_SNP [dm3] 2L_3988452_SNP [dm6]	T	C	4.053e^-4	0.766	INTRON fred
3R	1009112	3R_1009112_SNP [dm3] 3R_5183390_SNP [dm6]	A	G	4.060e^-4	0.766	INTRON cno
3L	2495813	3L_2495813_SNP [dm3] 3L_2495813_SNP [dm6]	G	A	4.061e^-4	0.766	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26420019	3R_26420019_SNP [dm3] 3R_30594297_SNP [dm6]	A	G	4.066e^-4	0.766	INTRON CG2246
3L	9252399	3L_9252399_SNP [dm3] 3L_9259299_SNP [dm6]	T	A	4.066e^-4	0.766	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15033953	2R_15033953_SNP [dm3] 2R_19146448_SNP [dm6]	T	G	4.071e^-4	0.766	INTRON ena	TF binding site mE1_TFBS_inv
X	3427814	X_3427814_SNP [dm3] X_3533781_SNP [dm6]	G	A	4.073e^-4	0.766	INTRON CG32791	TF binding site mE1_TFBS_inv
3R	6789221	3R_6789221_SNP [dm3] 3R_10963499_SNP [dm6]	G	C	4.081e^-4	0.766	INTERGENIC
3L	12024436	3L_12024436_SNP [dm3] 3L_12031336_SNP [dm6]	C	A	4.084e^-4	0.766	INTRON rols
2R	12284227	2R_12284227_DEL [dm3] 2R_16396722_DEL [dm6]	AA	A	4.094e^-4	0.766	INTRON Sema-2b
3R	24731811	3R_24731811_SNP [dm3] 3R_28906089_SNP [dm6]	C	T	4.094e^-4	0.766	SYNONYMOUS_CODING Doa INTRON Doa	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	16173962	X_16173962_SNP [dm3] X_16279929_SNP [dm6]	A	T	4.099e^-4	0.766	UTR_5_PRIME eas INTRON eas	TF binding site BDTNP1_TFBS_dl
2L	16402924	2L_16402924_SNP [dm3] 2L_16402924_SNP [dm6]	G	T	4.100e^-4	0.766	INTRON CG5888
3L	17667767	3L_17667767_SNP [dm3] 3L_17674667_SNP [dm6]	T	C	4.106e^-4	0.766	INTRON CG34251
2L	12610321	2L_12610321_SNP [dm3] 2L_12610321_SNP [dm6]	G	C	4.107e^-4	0.766	DOWNSTREAM Ref2 INTRON nub	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9014378	3L_9014378_SNP [dm3] 3L_9021278_SNP [dm6]	T	A	4.112e^-4	0.766	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
X	11869314	X_11869314_SNP [dm3] X_11975281_SNP [dm6]	A	G	4.115e^-4	0.766	INTRON cac
2L	8795437	2L_8795437_SNP [dm3] 2L_8795437_SNP [dm6]	G	A	4.116e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	13425608	3R_13425608_SNP [dm3] 3R_17599886_SNP [dm6]	A	G	4.119e^-4	0.766	INTERGENIC
2L	9332156	2L_9332156_SNP [dm3] 2L_9332156_SNP [dm6]	T	C	4.119e^-4	0.766	DOWNSTREAM Cks30A INTERGENIC
2R	19296137	2R_19296137_SNP [dm3] 2R_23408614_SNP [dm6]	C	G	4.119e^-4	0.766	INTERGENIC
3R	5388327	3R_5388327_SNP [dm3] 3R_9562605_SNP [dm6]	A	G	4.123e^-4	0.766	INTRON CG9393	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10405095	3L_10405095_SNP [dm3] 3L_10411995_SNP [dm6]	C	A	4.126e^-4	0.766	UPSTREAM CR44543 & 1 other EXON CR43990
3L	10694897	3L_10694897_SNP [dm3] 3L_10701797_SNP [dm6]	T	A	4.133e^-4	0.766	INTERGENIC
X	16060556	X_16060556_DEL [dm3] X_16166523_DEL [dm6]	AA	A	4.151e^-4	0.766	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens

By genomic position
Variant impact
Gene name

pc_Surv_MeHg_15 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results