DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.997e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	4.6515	0.0977

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2192 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	11484920	2L_11484920_SNP [dm3] 2L_11484920_SNP [dm6]	T	A	1.760e^-6	0.749	UTR_5_PRIME sala & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16990229	2R_16990229_DEL [dm3] 2R_21102724_DEL [dm6]	TA	T	3.539e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	16990210	2R_16990210_SNP [dm3] 2R_21102705_SNP [dm6]	T	C	3.686e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	16990214	2R_16990214_INS [dm3] 2R_21102709_INS [dm6]	T	TT	4.287e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	16990209	2R_16990209_SNP [dm3] 2R_21102704_SNP [dm6]	T	A	4.582e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	14765723	2R_14765723_SNP [dm3] 2R_18878218_SNP [dm6]	T	G	4.761e^-6	0.749	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8930441	2R_8930441_SNP [dm3] 2R_13042936_SNP [dm6]	A	G	5.346e^-6	0.749	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7454914	3L_7454914_SNP [dm3] 3L_7461814_SNP [dm6]	G	A	5.396e^-6	0.749	INTERGENIC
2R	16990222	2R_16990222_DEL [dm3] 2R_21102717_DEL [dm6]	TCA	T	5.680e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2R	16990233	2R_16990233_SNP [dm3] 2R_21102728_SNP [dm6]	C	A	6.903e^-6	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	17923393	X_17923393_SNP [dm3] X_18029360_SNP [dm6]	G	T	7.095e^-6	0.749	INTRON Sh
2R	15901191	2R_15901191_SNP [dm3] 2R_20013686_SNP [dm6]	T	A	9.237e^-6	0.749	UPSTREAM CR44629 INTERGENIC
2R	14928217	2R_14928217_SNP [dm3] 2R_19040712_SNP [dm6]	T	C	9.747e^-6	0.749	INTERGENIC
2R	19940705	2R_19940705_SNP [dm3] 2R_24053182_SNP [dm6]	T	C	1.011e^-5	0.749	DOWNSTREAM sei INTRON ppk29
2R	11155527	2R_11155527_SNP [dm3] 2R_15268022_SNP [dm6]	T	G	1.133e^-5	0.749	INTRON Trpm
3L	11039230	3L_11039230_SNP [dm3] 3L_11046130_SNP [dm6]	C	A	1.142e^-5	0.749	INTRON CG43693	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8930592	2R_8930592_SNP [dm3] 2R_13043087_SNP [dm6]	A	G	1.181e^-5	0.749	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16990219	2R_16990219_SNP [dm3] 2R_21102714_SNP [dm6]	G	T	1.199e^-5	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	9463981	2L_9463981_SNP [dm3] 2L_9463981_SNP [dm6]	A	G	1.235e^-5	0.749	UTR_3_PRIME numb DOWNSTREAM numb
2R	14765726	2R_14765726_SNP [dm3] 2R_18878221_SNP [dm6]	T	A	1.282e^-5	0.749	UPSTREAM sano INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	12748249	3R_12748249_SNP [dm3] 3R_16922527_SNP [dm6]	A	G	1.290e^-5	0.749	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21288769	3L_21288769_SNP [dm3] 3L_21295669_SNP [dm6]	T	C	1.321e^-5	0.749	SYNONYMOUS_CODING Cpr78Cb
3L	16835280	3L_16835280_SNP [dm3] 3L_16842180_SNP [dm6]	T	G	1.358e^-5	0.749	UPSTREAM TSG101 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8930527	2R_8930527_SNP [dm3] 2R_13043022_SNP [dm6]	G	A	1.367e^-5	0.749	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	12280030	2L_12280030_SNP [dm3] 2L_12280030_SNP [dm6]	C	A	1.451e^-5	0.749	INTRON aret
2R	17903954	2R_17903954_SNP [dm3] 2R_22016449_SNP [dm6]	G	A	1.470e^-5	0.749	INTRON CG34370
2R	21060294	2R_21060294_SNP [dm3] 2R_25172771_SNP [dm6]	A	T	1.486e^-5	0.749	UPSTREAM Sfp60F DOWNSTREAM PebII INTERGENIC
3R	12711921	3R_12711921_SNP [dm3] 3R_16886199_SNP [dm6]	G	A	1.540e^-5	0.749	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	11485082	2L_11485082_SNP [dm3] 2L_11485082_SNP [dm6]	G	T	1.591e^-5	0.749	INTRON CG43355 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7454870	3L_7454870_SNP [dm3] 3L_7461770_SNP [dm6]	C	A	1.621e^-5	0.749	INTERGENIC
2L	10131389	2L_10131389_SNP [dm3] 2L_10131389_SNP [dm6]	A	G	1.671e^-5	0.749	INTRON CG44153
2R	20758401	2R_20758401_SNP [dm3] 2R_24870878_SNP [dm6]	A	G	1.709e^-5	0.749	SYNONYMOUS_CODING Atf-2 DOWNSTREAM CG16896	TF binding site mE1_TFBS_sens
2L	8700458	2L_8700458_SNP [dm3] 2L_8700458_SNP [dm6]	G	A	1.774e^-5	0.749	UPSTREAM Hnf4 INTRON Hnf4
X	11519750	X_11519750_SNP [dm3] X_11625717_SNP [dm6]	C	G	1.777e^-5	0.749	INTRON Ptp10D
2L	9463006	2L_9463006_SNP [dm3] 2L_9463006_SNP [dm6]	T	G	1.829e^-5	0.749	UTR_3_PRIME numb
3R	10766286	3R_10766286_SNP [dm3] 3R_14940564_SNP [dm6]	G	C	1.866e^-5	0.749	INTERGENIC
X	2343871	X_2343871_SNP [dm3] X_2449838_SNP [dm6]	T	A	1.879e^-5	0.749	SYNONYMOUS_CODING z INTRON boi	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10862368	3L_10862368_SNP [dm3] 3L_10869268_SNP [dm6]	T	C	1.881e^-5	0.749	UPSTREAM tna INTRON tna
2L	7250035	2L_7250035_SNP [dm3] 2L_7250035_SNP [dm6]	A	G	1.882e^-5	0.749	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	4484475	2R_4484475_SNP [dm3] 2R_8596970_SNP [dm6]	T	A	1.899e^-5	0.749	DOWNSTREAM CG8735 INTERGENIC
2R	17299063	2R_17299063_SNP [dm3] 2R_21411558_SNP [dm6]	A	G	1.935e^-5	0.749	INTRON Sdc
2L	4046993	2L_4046993_DEL [dm3] 2L_4046993_DEL [dm6]	AATA	A	1.975e^-5	0.749	INTRON ed
X	11519899	X_11519899_DEL [dm3] X_11625866_DEL [dm6]	GG	G	2.042e^-5	0.749	INTRON Ptp10D
2R	3512030	2R_3512030_SNP [dm3] 2R_7624525_SNP [dm6]	A	C	2.051e^-5	0.749	INTRON CG43340
3L	366062	3L_366062_SNP [dm3] 3L_366062_SNP [dm6]	C	G	2.068e^-5	0.749	NON_SYNONYMOUS_CODING CG13884 DOWNSTREAM trh & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	22203666	X_22203666_SNP [dm3] X_22801830_SNP [dm6]	A	C	2.103e^-5	0.749	INTERGENIC
2L	12285936	2L_12285936_SNP [dm3] 2L_12285936_SNP [dm6]	T	C	2.133e^-5	0.749	INTRON aret
X	16153547	X_16153547_SNP [dm3] X_16259514_SNP [dm6]	G	A	2.141e^-5	0.749	INTERGENIC
3R	13838737	3R_13838737_SNP [dm3] 3R_18013015_SNP [dm6]	T	A	2.226e^-5	0.749	INTRON cpo	TF binding site mE1_TFBS_cad
3L	4778705	3L_4778705_SNP [dm3] 3L_4778705_SNP [dm6]	T	A	2.227e^-5	0.749	INTRON RhoGEF64C
3R	15833329	3R_15833329_SNP [dm3] 3R_20007607_SNP [dm6]	T	C	2.254e^-5	0.749	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15156150	2R_15156150_SNP [dm3] 2R_19268645_SNP [dm6]	T	G	2.319e^-5	0.749	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9929328	2R_9929328_SNP [dm3] 2R_14041823_SNP [dm6]	A	T	2.340e^-5	0.749	INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8995235	2L_8995235_SNP [dm3] 2L_8995235_SNP [dm6]	A	G	2.348e^-5	0.749	NON_SYNONYMOUS_CODING CG17906 UTR_3_PRIME alien DOWNSTREAM alien
2L	12285953	2L_12285953_SNP [dm3] 2L_12285953_SNP [dm6]	G	T	2.492e^-5	0.749	INTRON aret
2R	16990207	2R_16990207_SNP [dm3] 2R_21102702_SNP [dm6]	A	G	2.507e^-5	0.749	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
2L	1065052	2L_1065052_SNP [dm3] 2L_1065052_SNP [dm6]	G	C	2.536e^-5	0.749	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4271163	X_4271163_SNP [dm3] X_4377130_SNP [dm6]	C	T	2.552e^-5	0.749	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18004262	2R_18004262_SNP [dm3] 2R_22116757_SNP [dm6]	G	T	2.607e^-5	0.749	UPSTREAM Vrp1 DOWNSTREAM CG30281 INTRON Vrp1
X	11519769	X_11519769_SNP [dm3] X_11625736_SNP [dm6]	A	G	2.633e^-5	0.749	INTRON Ptp10D
3L	8992800	3L_8992800_SNP [dm3] 3L_8999700_SNP [dm6]	T	C	2.721e^-5	0.749	SYNONYMOUS_CODING CG5087	TF binding site mE1_TFBS_sens
X	11519749	X_11519749_SNP [dm3] X_11625716_SNP [dm6]	T	C	2.772e^-5	0.749	INTRON Ptp10D
3L	16877538	3L_16877538_SNP [dm3] 3L_16884438_SNP [dm6]	C	T	2.797e^-5	0.749	INTRON Lmpt
2L	8700469	2L_8700469_SNP [dm3] 2L_8700469_SNP [dm6]	A	G	2.848e^-5	0.749	UPSTREAM Hnf4 INTRON Hnf4
3L	11553725	3L_11553725_SNP [dm3] 3L_11560625_SNP [dm6]	G	C	2.856e^-5	0.749	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	6722741	X_6722741_SNP [dm3] X_6828708_SNP [dm6]	G	A	2.866e^-5	0.749	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo
3L	11553724	3L_11553724_SNP [dm3] 3L_11560624_SNP [dm6]	C	G	2.941e^-5	0.749	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	13598038	2R_13598038_SNP [dm3] 2R_17710533_SNP [dm6]	G	T	2.948e^-5	0.749	INTRON CG6424
3L	8425907	3L_8425907_SNP [dm3] 3L_8432807_SNP [dm6]	T	A	2.991e^-5	0.749	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
3L	9285110	3L_9285110_SNP [dm3] 3L_9292010_SNP [dm6]	G	T	3.056e^-5	0.749	INTERGENIC
3L	9674978	3L_9674978_SNP [dm3] 3L_9681878_SNP [dm6]	C	T	3.060e^-5	0.749	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
2R	17974312	2R_17974312_SNP [dm3] 2R_22086807_SNP [dm6]	G	A	3.072e^-5	0.749	SYNONYMOUS_CODING CG13502 INTRON CG13502
3L	8676356	3L_8676356_SNP [dm3] 3L_8683256_SNP [dm6]	C	A	3.082e^-5	0.749	INTERGENIC	regulatory region REDfly_CRMs
3L	9283356	3L_9283356_SNP [dm3] 3L_9290256_SNP [dm6]	G	A	3.173e^-5	0.749	INTERGENIC
X	11519775	X_11519775_INS [dm3] X_11625742_INS [dm6]	C	CATAC	3.184e^-5	0.749	INTRON Ptp10D
2R	3576103	2R_3576103_SNP [dm3] 2R_7688598_SNP [dm6]	G	T	3.252e^-5	0.749	INTRON CG1399
X	11519763	X_11519763_SNP [dm3] X_11625730_SNP [dm6]	A	T	3.262e^-5	0.749	INTRON Ptp10D
2R	11182596	2R_11182596_SNP [dm3] 2R_15295091_SNP [dm6]	T	A	3.273e^-5	0.749	UPSTREAM CR44241 INTRON Trpm
2R	11156265	2R_11156265_SNP [dm3] 2R_15268760_SNP [dm6]	G	T	3.277e^-5	0.749	INTRON Trpm
2R	20769293	2R_20769293_SNP [dm3] 2R_24881770_SNP [dm6]	T	C	3.355e^-5	0.749	UTR_5_PRIME NKAIN DOWNSTREAM CG44247 INTRON NKAIN EXON CR43466	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17315103	2R_17315103_SNP [dm3] 2R_21427598_SNP [dm6]	G	C	3.365e^-5	0.749	INTRON Sdc
2R	16290821	2R_16290821_SNP [dm3] 2R_20403316_SNP [dm6]	C	T	3.392e^-5	0.749	INTERGENIC
X	11519841	X_11519841_SNP [dm3] X_11625808_SNP [dm6]	A	T	3.436e^-5	0.749	INTRON Ptp10D
3R	14210174	3R_14210174_SNP [dm3] 3R_18384452_SNP [dm6]	G	T	3.438e^-5	0.749	SYNONYMOUS_CODING CG14309
2R	20758602	2R_20758602_SNP [dm3] 2R_24871079_SNP [dm6]	A	G	3.495e^-5	0.749	SYNONYMOUS_CODING Atf-2 DOWNSTREAM CG16896
X	2534152	X_2534152_SNP [dm3] X_2640119_SNP [dm6]	C	T	3.532e^-5	0.749	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12057599	3L_12057599_SNP [dm3] 3L_12064499_SNP [dm6]	T	C	3.539e^-5	0.749	INTRON rols
X	17923383	X_17923383_SNP [dm3] X_18029350_SNP [dm6]	T	C	3.552e^-5	0.749	INTRON Sh
3L	730003	3L_730003_SNP [dm3] 3L_730003_SNP [dm6]	C	G	3.555e^-5	0.749	INTERGENIC	TF binding site mE1_TFBS_inv
2R	2803110	2R_2803110_SNP [dm3] 2R_6915605_SNP [dm6]	A	C	3.763e^-5	0.769	INTRON CG30158
2R	20769158	2R_20769158_SNP [dm3] 2R_24881635_SNP [dm6]	A	G	3.771e^-5	0.769	START_GAINED NKAIN UTR_5_PRIME NKAIN DOWNSTREAM CG44247 INTRON NKAIN EXON CR43466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_zfh1
X	8173413	X_8173413_DEL [dm3] X_8279380_DEL [dm6]	GAAATGG	G	3.775e^-5	0.769	UTR_3_PRIME nAChRalpha3	TF binding site mE1_TFBS_HSA
3L	11035214	3L_11035214_SNP [dm3] 3L_11042114_SNP [dm6]	A	G	3.811e^-5	0.769	INTRON CG43693	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	17923339	X_17923339_SNP [dm3] X_18029306_SNP [dm6]	A	T	3.865e^-5	0.771	INTRON Sh
2R	20768944	2R_20768944_SNP [dm3] 2R_24881421_SNP [dm6]	G	A	4.057e^-5	0.8	UPSTREAM NKAIN DOWNSTREAM CG44247 INTRON CR43466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	11519745	X_11519745_SNP [dm3] X_11625712_SNP [dm6]	G	T	4.113e^-5	0.8	INTRON Ptp10D
2R	11587511	2R_11587511_SNP [dm3] 2R_15700006_SNP [dm6]	T	C	4.165e^-5	0.8	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16203613	2R_16203613_SNP [dm3] 2R_20316108_SNP [dm6]	G	A	4.248e^-5	0.8	DOWNSTREAM CR44642 INTRON CG13868	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7249869	2L_7249869_SNP [dm3] 2L_7249869_SNP [dm6]	C	T	4.363e^-5	0.8	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11155987	2R_11155987_SNP [dm3] 2R_15268482_SNP [dm6]	T	G	4.386e^-5	0.8	INTRON Trpm
2R	20758533	2R_20758533_SNP [dm3] 2R_24871010_SNP [dm6]	A	C	4.409e^-5	0.8	SYNONYMOUS_CODING Atf-2 DOWNSTREAM CG16896	TF binding site mE1_TFBS_sens
2R	20768854	2R_20768854_SNP [dm3] 2R_24881331_SNP [dm6]	T	G	4.494e^-5	0.8	UPSTREAM NKAIN DOWNSTREAM CG44247 EXON CR43466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	1203357	3L_1203357_SNP [dm3] 3L_1203357_SNP [dm6]	T	A	4.632e^-5	0.8	UTR_3_PRIME CG9119 UPSTREAM CG32335 INTRON mwh	TF binding site mE1_TFBS_cad
2R	8930603	2R_8930603_SNP [dm3] 2R_13043098_SNP [dm6]	T	C	4.673e^-5	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18402917	2L_18402917_SNP [dm3] 2L_18402917_SNP [dm6]	C	A	4.709e^-5	0.8	INTERGENIC
3R	18499410	3R_18499410_SNP [dm3] 3R_22673688_SNP [dm6]	G	C	4.731e^-5	0.8	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
X	4291059	X_4291059_DEL [dm3] X_4397026_DEL [dm6]	TGAAACCAATTTCGCCATAT...	T	4.749e^-5	0.8	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17883597	X_17883597_SNP [dm3] X_17989564_SNP [dm6]	C	A	4.758e^-5	0.8	INTRON Sh
X	4679388	X_4679388_SNP [dm3] X_4785355_SNP [dm6]	T	C	4.789e^-5	0.8	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo
3L	20945325	3L_20945325_SNP [dm3] 3L_20952225_SNP [dm6]	A	G	4.874e^-5	0.8	INTERGENIC
3L	23033953	3L_23033953_SNP [dm3] 3L_23040853_SNP [dm6]	T	A	4.882e^-5	0.8	DOWNSTREAM nrm INTERGENIC
3R	12533019	3R_12533019_SNP [dm3] 3R_16707297_SNP [dm6]	C	T	4.882e^-5	0.8	INTRON Ubx
2R	20767150	2R_20767150_SNP [dm3] 2R_24879627_SNP [dm6]	G	A	4.916e^-5	0.8	NON_SYNONYMOUS_CODING CG44247	TF binding site mE1_TFBS_chinmo
3L	16018905	3L_16018905_SNP [dm3] 3L_16025805_SNP [dm6]	C	A	4.926e^-5	0.8	INTRON Notum	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2R	17018976	2R_17018976_SNP [dm3] 2R_21131471_SNP [dm6]	C	T	4.931e^-5	0.8	SYNONYMOUS_CODING Magi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19164428	2R_19164428_SNP [dm3] 2R_23276905_SNP [dm6]	T	G	5.060e^-5	0.8	INTERGENIC
3L	21291410	3L_21291410_SNP [dm3] 3L_21298310_SNP [dm6]	G	A	5.162e^-5	0.8	UPSTREAM CG43702 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	730008	3L_730008_SNP [dm3] 3L_730008_SNP [dm6]	G	A	5.165e^-5	0.8	INTERGENIC	TF binding site mE1_TFBS_inv
2L	4023666	2L_4023666_SNP [dm3] 2L_4023666_SNP [dm6]	G	A	5.238e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9057956	2R_9057956_SNP [dm3] 2R_13170451_SNP [dm6]	C	T	5.258e^-5	0.8	SYNONYMOUS_CODING Spt-I UPSTREAM AGBE EXON CR45142
2R	17131939	2R_17131939_SNP [dm3] 2R_21244434_SNP [dm6]	A	G	5.282e^-5	0.8	INTRON ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1821284	2L_1821284_SNP [dm3] 2L_1821284_SNP [dm6]	G	A	5.296e^-5	0.8	NON_SYNONYMOUS_CODING CG31933
2R	20758995	2R_20758995_SNP [dm3] 2R_24871472_SNP [dm6]	C	T	5.418e^-5	0.8	UTR_3_PRIME CG16896 & 1 other
3R	14529680	3R_14529680_SNP [dm3] 3R_18703958_SNP [dm6]	G	C	5.439e^-5	0.8	INTERGENIC
3R	22602413	3R_22602413_SNP [dm3] 3R_26776691_SNP [dm6]	C	T	5.482e^-5	0.8	INTERGENIC
X	5035612	X_5035612_SNP [dm3] X_5141579_SNP [dm6]	T	A	5.517e^-5	0.8	INTRON rg & 1 other
3L	13358271	3L_13358271_SNP [dm3] 3L_13365171_SNP [dm6]	A	T	5.601e^-5	0.8	INTERGENIC
2R	19415394	2R_19415394_SNP [dm3] 2R_23527871_SNP [dm6]	T	C	5.603e^-5	0.8	UTR_3_PRIME mi & 1 other DOWNSTREAM bw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4478378	2R_4478378_SNP [dm3] 2R_8590873_SNP [dm6]	C	A	5.642e^-5	0.8	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	4271164	X_4271164_SNP [dm3] X_4377131_SNP [dm6]	A	G	5.744e^-5	0.8	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5214618	2R_5214618_SNP [dm3] 2R_9327113_SNP [dm6]	A	C	5.771e^-5	0.8	INTRON CG13954 & 1 other
2R	8930602	2R_8930602_SNP [dm3] 2R_13043097_SNP [dm6]	C	A	5.773e^-5	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8491994	2R_8491994_SNP [dm3] 2R_12604489_SNP [dm6]	G	T	5.854e^-5	0.8	INTRON Amph
3L	7454754	3L_7454754_SNP [dm3] 3L_7461654_SNP [dm6]	T	C	5.881e^-5	0.8	INTERGENIC
3R	8832717	3R_8832717_SNP [dm3] 3R_13006995_SNP [dm6]	G	T	5.896e^-5	0.8	NON_SYNONYMOUS_CODING CG7518	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19603722	X_19603722_SNP [dm3] X_19709689_SNP [dm6]	T	C	6.018e^-5	0.8	INTRON meso18E
3R	13317965	3R_13317965_SNP [dm3] 3R_17492243_SNP [dm6]	C	T	6.059e^-5	0.8	INTRON Dscam3
X	18900128	X_18900128_SNP [dm3] X_19006095_SNP [dm6]	C	T	6.087e^-5	0.8	INTRON CG43759	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8930554	2R_8930554_SNP [dm3] 2R_13043049_SNP [dm6]	A	C	6.105e^-5	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2L	8704257	2L_8704257_INS [dm3] 2L_8704257_INS [dm6]	TTAAA	GCGTTT	6.113e^-5	0.8	INTRON Hnf4 EXON CR44992
2R	8930886	2R_8930886_SNP [dm3] 2R_13043381_SNP [dm6]	C	A	6.115e^-5	0.8	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
3R	11399167	3R_11399167_DEL [dm3] 3R_15573445_DEL [dm6]	TCGACTACGCAT...	T	6.207e^-5	0.8	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11847311	2L_11847311_SNP [dm3] 2L_11847311_SNP [dm6]	G	A	6.222e^-5	0.8	SYNONYMOUS_CODING Mal-B1 INTRON Pde1c
3L	1369305	3L_1369305_SNP [dm3] 3L_1369305_SNP [dm6]	C	T	6.225e^-5	0.8	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	14296925	2R_14296925_SNP [dm3] 2R_18409420_SNP [dm6]	C	T	6.239e^-5	0.8	SYNONYMOUS_CODING GstE9 DOWNSTREAM GstE8 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8366683	2R_8366683_DEL [dm3] 2R_12479178_DEL [dm6]	TTTCGGGCGGATTCCGCGGA...	T	6.374e^-5	0.8	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo
2R	18626735	2R_18626735_SNP [dm3] 2R_22739230_SNP [dm6]	A	G	6.491e^-5	0.8	INTRON jbug
2L	20960912	2L_20960912_INS [dm3] 2L_20960912_INS [dm6]	T	TACAT	6.497e^-5	0.8	INTERGENIC
2R	15155977	2R_15155977_INS [dm3] 2R_19268472_INS [dm6]	A	ACATA	6.509e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	15359234	2L_15359234_SNP [dm3] 2L_15359234_SNP [dm6]	C	G	6.625e^-5	0.8	INTERGENIC
2R	8933808	2R_8933808_SNP [dm3] 2R_13046303_SNP [dm6]	C	G	6.696e^-5	0.8	UTR_3_PRIME CG13323 DOWNSTREAM CG13323
2L	9463848	2L_9463848_SNP [dm3] 2L_9463848_SNP [dm6]	T	A	6.704e^-5	0.8	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
3R	5883246	3R_5883246_SNP [dm3] 3R_10057524_SNP [dm6]	A	G	6.767e^-5	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18734745	X_18734745_SNP [dm3] X_18840712_SNP [dm6]	G	C	6.887e^-5	0.8	SYNONYMOUS_CODING Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13358274	3L_13358274_SNP [dm3] 3L_13365174_SNP [dm6]	T	C	6.921e^-5	0.8	INTERGENIC
3R	26412260	3R_26412260_SNP [dm3] 3R_30586538_SNP [dm6]	T	A	6.929e^-5	0.8	SYNONYMOUS_CODING CG9717
X	12990471	X_12990471_SNP [dm3] X_13096438_SNP [dm6]	A	T	6.956e^-5	0.8	UTR_3_PRIME CG43313 DOWNSTREAM CG2200	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20757233	2R_20757233_SNP [dm3] 2R_24869710_SNP [dm6]	T	C	7.042e^-5	0.8	UPSTREAM Atf-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5105154	2L_5105154_SNP [dm3] 2L_5105154_SNP [dm6]	A	G	7.116e^-5	0.8	INTRON Msp300
3L	7454751	3L_7454751_SNP [dm3] 3L_7461651_SNP [dm6]	T	C	7.216e^-5	0.8	INTERGENIC
3R	23017781	3R_23017781_SNP [dm3] 3R_27192059_SNP [dm6]	T	C	7.247e^-5	0.8	UTR_5_PRIME Ser	regulatory region REDfly_CRMs
2R	17693774	2R_17693774_SNP [dm3] 2R_21806269_SNP [dm6]	G	A	7.253e^-5	0.8	INTERGENIC	TF binding site mE1_TFBS_kn
2R	17114107	2R_17114107_SNP [dm3] 2R_21226602_SNP [dm6]	G	A	7.266e^-5	0.8	INTRON ASPP
2R	16173290	2R_16173290_SNP [dm3] 2R_20285785_SNP [dm6]	T	C	7.366e^-5	0.8	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20771384	2R_20771384_SNP [dm3] 2R_24883861_SNP [dm6]	A	T	7.424e^-5	0.8	UTR_3_PRIME NKAIN INTRON NKAIN
2R	16173632	2R_16173632_SNP [dm3] 2R_20286127_SNP [dm6]	T	C	7.433e^-5	0.8	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	11155944	2R_11155944_INS [dm3] 2R_15268439_INS [dm6]	G	GG	7.433e^-5	0.8	INTRON Trpm
3R	22943255	3R_22943255_SNP [dm3] 3R_27117533_SNP [dm6]	T	G	7.454e^-5	0.8	UPSTREAM CG6066 INTRON CG5880	TF binding site mE1_TFBS_cad
2R	11588069	2R_11588069_SNP [dm3] 2R_15700564_SNP [dm6]	G	A	7.469e^-5	0.8	START_GAINED CG42662 UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22887539	3R_22887539_SNP [dm3] 3R_27061817_SNP [dm6]	G	C	7.498e^-5	0.8	UPSTREAM CG34292 INTRON Nep5
2R	20758743	2R_20758743_SNP [dm3] 2R_24871220_SNP [dm6]	C	T	7.567e^-5	0.8	SYNONYMOUS_CODING Atf-2 DOWNSTREAM CG16896
3R	9230873	3R_9230873_SNP [dm3] 3R_13405151_SNP [dm6]	A	T	7.597e^-5	0.8	UTR_3_PRIME yellow-e2 UPSTREAM yellow-e3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	16102012	2R_16102012_SNP [dm3] 2R_20214507_SNP [dm6]	G	A	7.597e^-5	0.8	INTERGENIC
2R	19786008	2R_19786008_SNP [dm3] 2R_23898485_SNP [dm6]	T	A	7.614e^-5	0.8	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9948810	3L_9948810_SNP [dm3] 3L_9955710_SNP [dm6]	C	T	7.656e^-5	0.8	SYNONYMOUS_CODING CG34356
3L	8872769	3L_8872769_SNP [dm3] 3L_8879669_SNP [dm6]	T	C	7.657e^-5	0.8	INTRON dally
3R	23951706	3R_23951706_SNP [dm3] 3R_28125984_SNP [dm6]	C	T	7.657e^-5	0.8	INTERGENIC
2L	11554134	2L_11554134_SNP [dm3] 2L_11554134_SNP [dm6]	C	A	7.814e^-5	0.8	INTERGENIC
3R	23279980	3R_23279980_SNP [dm3] 3R_27454258_SNP [dm6]	G	A	7.822e^-5	0.8	INTERGENIC
2R	8930629	2R_8930629_SNP [dm3] 2R_13043124_SNP [dm6]	A	T	7.884e^-5	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14638631	2R_14638631_SNP [dm3] 2R_18751126_SNP [dm6]	G	C	7.898e^-5	0.8	SYNONYMOUS_CODING Hs3st-A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15239745	2R_15239745_SNP [dm3] 2R_19352240_SNP [dm6]	C	T	8.013e^-5	0.8	INTRON Rgk1
X	11519937	X_11519937_SNP [dm3] X_11625904_SNP [dm6]	C	T	8.060e^-5	0.8	INTRON Ptp10D
X	4878600	X_4878600_SNP [dm3] X_4984567_SNP [dm6]	T	A	8.093e^-5	0.8	INTRON CR44833	regulatory region REDfly_CRMs
2R	19581359	2R_19581359_SNP [dm3] 2R_23693836_SNP [dm6]	A	T	8.151e^-5	0.8	UPSTREAM angel INTRON CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	19610569	2R_19610569_SNP [dm3] 2R_23723046_SNP [dm6]	A	G	8.159e^-5	0.8	INTRON Sesn
2R	20757222	2R_20757222_SNP [dm3] 2R_24869699_SNP [dm6]	T	G	8.191e^-5	0.8	UPSTREAM Atf-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	6781249	3R_6781249_SNP [dm3] 3R_10955527_SNP [dm6]	T	A	8.272e^-5	0.8	INTERGENIC
2R	5256352	2R_5256352_SNP [dm3] 2R_9368847_SNP [dm6]	T	G	8.356e^-5	0.8	INTRON CG13954	TF binding site BDTNP1_TFBS_da
2R	16173650	2R_16173650_SNP [dm3] 2R_20286145_SNP [dm6]	T	C	8.390e^-5	0.8	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3R	26412140	3R_26412140_SNP [dm3] 3R_30586418_SNP [dm6]	T	G	8.427e^-5	0.8	SYNONYMOUS_CODING CG9717
3L	15176447	3L_15176447_SNP [dm3] 3L_15183347_SNP [dm6]	C	T	8.435e^-5	0.8	INTERGENIC
3L	11553737	3L_11553737_SNP [dm3] 3L_11560637_SNP [dm6]	A	T	8.442e^-5	0.8	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2L	4047586	2L_4047586_SNP [dm3] 2L_4047586_SNP [dm6]	C	T	8.536e^-5	0.8	INTRON ed
2L	18388556	2L_18388556_SNP [dm3] 2L_18388556_SNP [dm6]	C	T	8.671e^-5	0.8	SYNONYMOUS_CODING Fas3 INTRON Fas3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	8422709	X_8422709_SNP [dm3] X_8528676_SNP [dm6]	G	A	8.692e^-5	0.8	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7198068	2L_7198068_SNP [dm3] 2L_7198068_SNP [dm6]	C	A	8.859e^-5	0.8	INTRON CG4502
2L	20930350	2L_20930350_SNP [dm3] 2L_20930350_SNP [dm6]	G	A	8.879e^-5	0.8	SYNONYMOUS_CODING CG9270 DOWNSTREAM CR33319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15036686	2L_15036686_SNP [dm3] 2L_15036686_SNP [dm6]	C	T	8.940e^-5	0.8	SYNONYMOUS_CODING yellow-c UTR_3_PRIME CIAPIN1
2R	17059918	2R_17059918_SNP [dm3] 2R_21172413_SNP [dm6]	T	C	8.962e^-5	0.8	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad
3L	7455101	3L_7455101_SNP [dm3] 3L_7462001_SNP [dm6]	A	T	9.043e^-5	0.8	INTERGENIC
2R	19581288	2R_19581288_SNP [dm3] 2R_23693765_SNP [dm6]	A	G	9.069e^-5	0.8	UPSTREAM angel INTRON CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2L	19020846	2L_19020846_SNP [dm3] 2L_19020846_SNP [dm6]	C	T	9.078e^-5	0.8	UPSTREAM CR44184 INTERGENIC
2R	12278396	2R_12278396_SNP [dm3] 2R_16390891_SNP [dm6]	G	A	9.181e^-5	0.8	INTRON Sema-2b
3R	15833384	3R_15833384_SNP [dm3] 3R_20007662_SNP [dm6]	T	C	9.197e^-5	0.8	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	11092178	2L_11092178_SNP [dm3] 2L_11092178_SNP [dm6]	C	T	9.257e^-5	0.8	INTRON CG4705
3R	23379711	3R_23379711_SNP [dm3] 3R_27553989_SNP [dm6]	A	G	9.415e^-5	0.8	INTRON Klp98A
3L	8875006	3L_8875006_DEL [dm3] 3L_8881906_DEL [dm6]	CC	C	9.425e^-5	0.8	INTRON dally
2R	17059898	2R_17059898_SNP [dm3] 2R_21172393_SNP [dm6]	A	C	9.461e^-5	0.8	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad
3R	14209843	3R_14209843_SNP [dm3] 3R_18384121_SNP [dm6]	C	A	9.597e^-5	0.8	SYNONYMOUS_CODING CG14309
3L	1205038	3L_1205038_SNP [dm3] 3L_1205038_SNP [dm6]	T	A	9.604e^-5	0.8	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
X	4575007	X_4575007_SNP [dm3] X_4680974_SNP [dm6]	C	T	9.718e^-5	0.8	SYNONYMOUS_CODING Pp2C1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10698046	3R_10698046_SNP [dm3] 3R_14872324_SNP [dm6]	C	T	9.780e^-5	0.8	INTRON btsz
3L	11553814	3L_11553814_SNP [dm3] 3L_11560714_SNP [dm6]	A	T	9.787e^-5	0.8	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
X	2056263	X_2056263_SNP [dm3] X_2162230_SNP [dm6]	C	A	9.838e^-5	0.8	UTR_5_PRIME CG3630 UPSTREAM Cyp4d1
3L	3824237	3L_3824237_SNP [dm3] 3L_3824237_SNP [dm6]	T	A	9.867e^-5	0.8	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	4478293	2R_4478293_SNP [dm3] 2R_8590788_SNP [dm6]	C	A	9.930e^-5	0.8	INTRON CG14752	TF binding site mE1_TFBS_HSA
X	22140568	X_22140568_SNP [dm3] X_22738732_SNP [dm6]	G	A	1.003e^-4	0.8	INTRON CR44997	transposable element FlyBase
2R	17059879	2R_17059879_SNP [dm3] 2R_21172374_SNP [dm6]	C	A	1.005e^-4	0.8	SYNONYMOUS_CODING Xpd	TF binding site mE1_TFBS_cad
2R	8930567	2R_8930567_DEL [dm3] 2R_13043062_DEL [dm6]	GG	G	1.015e^-4	0.8	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
2R	16326295	2R_16326295_SNP [dm3] 2R_20438790_SNP [dm6]	A	T	1.015e^-4	0.8	INTRON CG12484
2R	16483757	2R_16483757_INS [dm3] 2R_20596252_INS [dm6]	T	TTTCACTCT	1.016e^-4	0.8	INTRON bl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	22140606	X_22140606_SNP [dm3] X_22738770_SNP [dm6]	A	C	1.019e^-4	0.8	INTRON CR44997	transposable element FlyBase
2R	14079412	2R_14079412_SNP [dm3] 2R_18191907_SNP [dm6]	T	G	1.020e^-4	0.8	INTRON CG33958
3R	10680671	3R_10680671_DEL [dm3] 3R_14854949_DEL [dm6]	CT	C	1.021e^-4	0.8	INTRON btsz	TF binding site BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	5219895	2R_5219895_SNP [dm3] 2R_9332390_SNP [dm6]	G	A	1.022e^-4	0.8	INTRON CG13954 & 1 other
3R	14649961	3R_14649961_SNP [dm3] 3R_18824239_SNP [dm6]	C	T	1.043e^-4	0.8	INTRON CG18208
3R	18499337	3R_18499337_SNP [dm3] 3R_22673615_SNP [dm6]	A	G	1.045e^-4	0.8	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	2842934	2L_2842934_SNP [dm3] 2L_2842934_SNP [dm6]	G	A	1.054e^-4	0.8	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
3R	27894396	3R_27894396_SNP [dm3] 3R_32068674_SNP [dm6]	C	A	1.054e^-4	0.8	UPSTREAM Map205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	20759763	2R_20759763_SNP [dm3] 2R_24872240_SNP [dm6]	G	A	1.058e^-4	0.8	SYNONYMOUS_CODING CG16896 DOWNSTREAM Atf-2	TF binding site mE1_TFBS_sens
2L	7198071	2L_7198071_DEL [dm3] 2L_7198071_DEL [dm6]	AAG	A	1.060e^-4	0.8	INTRON CG4502
3L	9192499	3L_9192499_SNP [dm3] 3L_9199399_SNP [dm6]	T	A	1.066e^-4	0.8	INTERGENIC
2L	11092246	2L_11092246_SNP [dm3] 2L_11092246_SNP [dm6]	C	T	1.070e^-4	0.8	SYNONYMOUS_CODING CG4705
3L	2316329	3L_2316329_SNP [dm3] 3L_2316329_SNP [dm6]	T	C	1.070e^-4	0.8	DOWNSTREAM CR45427 INTERGENIC
2L	18723008	2L_18723008_SNP [dm3] 2L_18723008_SNP [dm6]	G	A	1.070e^-4	0.8	INTRON CG10348
3R	22316793	3R_22316793_SNP [dm3] 3R_26491071_SNP [dm6]	A	T	1.088e^-4	0.8	INTRON plum
2R	19581297	2R_19581297_SNP [dm3] 2R_23693774_SNP [dm6]	C	A	1.094e^-4	0.8	UPSTREAM angel INTRON CG30183	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3L	21288867	3L_21288867_SNP [dm3] 3L_21295767_SNP [dm6]	G	A	1.095e^-4	0.8	NON_SYNONYMOUS_CODING Cpr78Cb DOWNSTREAM Edg78E
3R	13853703	3R_13853703_SNP [dm3] 3R_18027981_SNP [dm6]	C	T	1.102e^-4	0.8	INTERGENIC
3R	12532989	3R_12532989_SNP [dm3] 3R_16707267_SNP [dm6]	A	G	1.105e^-4	0.8	INTRON Ubx
2L	20849280	2L_20849280_SNP [dm3] 2L_20849280_SNP [dm6]	A	G	1.109e^-4	0.8	UPSTREAM CG14402 DOWNSTREAM CG31676 INTERGENIC
2R	20756904	2R_20756904_SNP [dm3] 2R_24869381_SNP [dm6]	A	G	1.111e^-4	0.8	UPSTREAM Atf-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12581731	3R_12581731_SNP [dm3] 3R_16756009_SNP [dm6]	G	T	1.112e^-4	0.8	INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9230737	3R_9230737_SNP [dm3] 3R_13405015_SNP [dm6]	T	C	1.113e^-4	0.8	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15273524	2R_15273524_INS [dm3] 2R_19386019_INS [dm6]	A	AGCT	1.114e^-4	0.8	INTRON CG10081
3L	2196419	3L_2196419_SNP [dm3] 3L_2196419_SNP [dm6]	A	G	1.115e^-4	0.8	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9418515	2L_9418515_SNP [dm3] 2L_9418515_SNP [dm6]	A	T	1.116e^-4	0.8	INTRON Mco1
3L	2208728	3L_2208728_SNP [dm3] 3L_2208728_SNP [dm6]	G	A	1.119e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_inv
2R	19940685	2R_19940685_SNP [dm3] 2R_24053162_SNP [dm6]	T	C	1.132e^-4	0.8	DOWNSTREAM sei INTRON ppk29
2R	16990227	2R_16990227_SNP [dm3] 2R_21102722_SNP [dm6]	C	A	1.132e^-4	0.8	INTRON ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_Trl
X	4271166	X_4271166_DEL [dm3] X_4377133_DEL [dm6]	TTC	T	1.133e^-4	0.8	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22878478	3R_22878478_INS [dm3] 3R_27052756_INS [dm6]	T	TT	1.133e^-4	0.8	INTRON RYa-R
2R	11587960	2R_11587960_SNP [dm3] 2R_15700455_SNP [dm6]	T	G	1.137e^-4	0.8	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9628186	2R_9628186_DEL [dm3] 2R_13740681_DEL [dm6]	ACAATA	A	1.138e^-4	0.8	INTRON fas
2R	12489109	2R_12489109_SNP [dm3] 2R_16601604_SNP [dm6]	A	G	1.149e^-4	0.8	INTRON CG8303
2L	4268760	2L_4268760_SNP [dm3] 2L_4268760_SNP [dm6]	G	C	1.152e^-4	0.8	INTERGENIC
3R	11221454	3R_11221454_SNP [dm3] 3R_15395732_SNP [dm6]	T	A	1.153e^-4	0.8	INTRON Rbp
3L	10505831	3L_10505831_INS [dm3] 3L_10512731_INS [dm6]	A	AA	1.154e^-4	0.8	INTRON A2bp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5883260	3R_5883260_SNP [dm3] 3R_10057538_SNP [dm6]	G	A	1.158e^-4	0.8	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11553804	3L_11553804_SNP [dm3] 3L_11560704_SNP [dm6]	T	A	1.166e^-4	0.8	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	10920954	2R_10920954_SNP [dm3] 2R_15033449_SNP [dm6]	A	T	1.171e^-4	0.8	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20930437	2L_20930437_SNP [dm3] 2L_20930437_SNP [dm6]	T	C	1.172e^-4	0.8	SYNONYMOUS_CODING CG9270 DOWNSTREAM CR33319	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1563731	2L_1563731_SNP [dm3] 2L_1563731_SNP [dm6]	T	C	1.176e^-4	0.8	INTRON haf	TF binding site mE1_TFBS_inv
2L	3164243	2L_3164243_SNP [dm3] 2L_3164243_SNP [dm6]	T	A	1.176e^-4	0.8	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14530149	3R_14530149_SNP [dm3] 3R_18704427_SNP [dm6]	A	G	1.185e^-4	0.8	INTERGENIC
2R	15260027	2R_15260027_SNP [dm3] 2R_19372522_SNP [dm6]	T	C	1.189e^-4	0.8	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
3L	5927372	3L_5927372_SNP [dm3] 3L_5934272_SNP [dm6]	C	A	1.189e^-4	0.8	NON_SYNONYMOUS_CODING CG33993
3L	2089168	3L_2089168_SNP [dm3] 3L_2089168_SNP [dm6]	G	C	1.189e^-4	0.8	UTR_3_PRIME sls INTRON sls & 1 other EXON CR42860
3L	5671409	3L_5671409_SNP [dm3] 3L_5678309_SNP [dm6]	A	T	1.191e^-4	0.8	UPSTREAM sif INTRON sif
3R	5942220	3R_5942220_SNP [dm3] 3R_10116498_SNP [dm6]	C	T	1.191e^-4	0.8	INTRON CG3940
3R	3098275	3R_3098275_SNP [dm3] 3R_7272553_SNP [dm6]	C	A	1.199e^-4	0.8	DOWNSTREAM rn & 1 other INTERGENIC
2R	10708678	2R_10708678_SNP [dm3] 2R_14821173_SNP [dm6]	C	A	1.206e^-4	0.8	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	9057667	2R_9057667_SNP [dm3] 2R_13170162_SNP [dm6]	C	T	1.211e^-4	0.8	SYNONYMOUS_CODING Spt-I EXON CR45142
3R	18423176	3R_18423176_SNP [dm3] 3R_22597454_SNP [dm6]	A	T	1.217e^-4	0.8	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9325289	3R_9325289_SNP [dm3] 3R_13499567_SNP [dm6]	A	T	1.218e^-4	0.8	INTERGENIC
2R	17804031	2R_17804031_SNP [dm3] 2R_21916526_SNP [dm6]	C	G	1.219e^-4	0.8	INTRON Fili
2R	12859039	2R_12859039_SNP [dm3] 2R_16971534_SNP [dm6]	T	C	1.225e^-4	0.8	EXON CR44377
2L	10049825	2L_10049825_SNP [dm3] 2L_10049825_SNP [dm6]	G	T	1.227e^-4	0.8	SYNONYMOUS_CODING CG33301	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11553742	3L_11553742_SNP [dm3] 3L_11560642_SNP [dm6]	C	G	1.231e^-4	0.8	INTRON Mob2	TF binding site BDTNP1_TFBS_dl
2R	10171349	2R_10171349_SNP [dm3] 2R_14283844_SNP [dm6]	G	C	1.233e^-4	0.8	INTRON Ih	TF binding site mE1_TFBS_cad
3L	12572188	3L_12572188_SNP [dm3] 3L_12579088_SNP [dm6]	C	T	1.234e^-4	0.8	INTERGENIC
2R	11478314	2R_11478314_SNP [dm3] 2R_15590809_SNP [dm6]	T	C	1.234e^-4	0.8	INTERGENIC
2L	16054881	2L_16054881_SNP [dm3] 2L_16054881_SNP [dm6]	G	A	1.238e^-4	0.8	INTRON beat-Ia
3L	18086876	3L_18086876_SNP [dm3] 3L_18093776_SNP [dm6]	C	T	1.247e^-4	0.8	INTRON CG13698
3L	21285905	3L_21285905_SNP [dm3] 3L_21292805_SNP [dm6]	A	T	1.250e^-4	0.8	UPSTREAM Cpr78Ca INTERGENIC
2L	5686897	2L_5686897_SNP [dm3] 2L_5686897_SNP [dm6]	T	A	1.250e^-4	0.8	INTERGENIC
3L	9674840	3L_9674840_SNP [dm3] 3L_9681740_SNP [dm6]	T	A	1.251e^-4	0.8	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
2L	18418014	2L_18418014_SNP [dm3] 2L_18418014_SNP [dm6]	G	A	1.253e^-4	0.8	INTERGENIC
2R	13750885	2R_13750885_SNP [dm3] 2R_17863380_SNP [dm6]	T	C	1.253e^-4	0.8	SYNONYMOUS_CODING thr
3L	6726353	3L_6726353_SNP [dm3] 3L_6733253_SNP [dm6]	C	A	1.256e^-4	0.8	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2471233	3L_2471233_SNP [dm3] 3L_2471233_SNP [dm6]	A	G	1.259e^-4	0.8	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	16176361	2R_16176361_SNP [dm3] 2R_20288856_SNP [dm6]	T	C	1.259e^-4	0.8	UTR_3_PRIME Cpr56F UPSTREAM CkIIbeta2 DOWNSTREAM CG34199	TF binding site mE1_TFBS_chinmo
X	14791967	X_14791967_SNP [dm3] X_14897934_SNP [dm6]	C	T	1.261e^-4	0.8	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3836762	2R_3836762_SNP [dm3] 2R_7949257_SNP [dm6]	T	A	1.264e^-4	0.8	UPSTREAM CG11165 INTRON CG14764	TF binding site BDTNP1_TFBS_da
3L	4919698	3L_4919698_SNP [dm3] 3L_4919698_SNP [dm6]	T	A	1.268e^-4	0.8	UTR_3_PRIME Rh50 DOWNSTREAM Rh50	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9392497	2L_9392497_SNP [dm3] 2L_9392497_SNP [dm6]	T	G	1.271e^-4	0.8	DOWNSTREAM Aldh INTRON Shawl
3R	11187373	3R_11187373_SNP [dm3] 3R_15361651_SNP [dm6]	C	A	1.277e^-4	0.8	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10697527	3R_10697527_SNP [dm3] 3R_14871805_SNP [dm6]	T	A	1.278e^-4	0.8	INTRON btsz
3L	2360785	3L_2360785_SNP [dm3] 3L_2360785_SNP [dm6]	G	A	1.280e^-4	0.8	NON_SYNONYMOUS_CODING CG13801
3L	1200713	3L_1200713_SNP [dm3] 3L_1200713_SNP [dm6]	G	A	1.293e^-4	0.805	UPSTREAM mwh INTERGENIC
2L	3928538	2L_3928538_SNP [dm3] 2L_3928538_SNP [dm6]	C	A	1.298e^-4	0.805	INTRON fred
X	15431705	X_15431705_SNP [dm3] X_15537672_SNP [dm6]	C	T	1.301e^-4	0.805	INTRON Ac13E
2L	805441	2L_805441_SNP [dm3] 2L_805441_SNP [dm6]	G	A	1.316e^-4	0.812	INTERGENIC
2R	5214619	2R_5214619_DEL [dm3] 2R_9327114_DEL [dm6]	AGATGGTGTTG...	A	1.333e^-4	0.813	INTRON CG13954 & 1 other
2R	9146737	2R_9146737_SNP [dm3] 2R_13259232_SNP [dm6]	C	T	1.337e^-4	0.813	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2R	10171279	2R_10171279_SNP [dm3] 2R_14283774_SNP [dm6]	C	T	1.342e^-4	0.813	INTRON Ih
2R	17315111	2R_17315111_SNP [dm3] 2R_21427606_SNP [dm6]	C	T	1.344e^-4	0.813	INTRON Sdc
X	2534099	X_2534099_SNP [dm3] X_2640066_SNP [dm6]	T	A	1.346e^-4	0.813	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	4896797	2L_4896797_SNP [dm3] 2L_4896797_SNP [dm6]	A	T	1.349e^-4	0.813	INTRON CG3036
2L	5617034	2L_5617034_DEL [dm3] 2L_5617034_DEL [dm6]	CT	C	1.355e^-4	0.813	INTRON CG14010	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11519834	X_11519834_SNP [dm3] X_11625801_SNP [dm6]	C	G	1.356e^-4	0.813	INTRON Ptp10D
3R	18423623	3R_18423623_DEL [dm3] 3R_22597901_DEL [dm6]	TT	T	1.378e^-4	0.813	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	15422147	X_15422147_SNP [dm3] X_15528114_SNP [dm6]	T	A	1.380e^-4	0.813	INTRON Ac13E
2R	11588292	2R_11588292_SNP [dm3] 2R_15700787_SNP [dm6]	T	A	1.380e^-4	0.813	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23379789	3R_23379789_SNP [dm3] 3R_27554067_SNP [dm6]	G	A	1.388e^-4	0.813	INTRON Klp98A
2L	19292235	2L_19292235_SNP [dm3] 2L_19292235_SNP [dm6]	T	G	1.390e^-4	0.813	INTERGENIC
2R	15273521	2R_15273521_MNP [dm3] 2R_19386016_MNP [dm6]	TAT	GTA	1.395e^-4	0.813	INTRON CG10081
3R	6972279	3R_6972279_SNP [dm3] 3R_11146557_SNP [dm6]	T	A	1.401e^-4	0.813	INTERGENIC
2R	15273527	2R_15273527_SNP [dm3] 2R_19386022_SNP [dm6]	T	C	1.401e^-4	0.813	INTRON CG10081
X	18329630	X_18329630_SNP [dm3] X_18435597_SNP [dm6]	C	T	1.403e^-4	0.813	DOWNSTREAM CG32548 INTERGENIC
2R	10224119	2R_10224119_SNP [dm3] 2R_14336614_SNP [dm6]	T	C	1.403e^-4	0.813	INTRON Shroom	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11489404	2L_11489404_SNP [dm3] 2L_11489404_SNP [dm6]	A	G	1.405e^-4	0.813	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20508385	3R_20508385_SNP [dm3] 3R_24682663_SNP [dm6]	T	C	1.406e^-4	0.813	INTRON slo
2R	11952311	2R_11952311_SNP [dm3] 2R_16064806_SNP [dm6]	C	T	1.409e^-4	0.813	DOWNSTREAM mir-137 INTERGENIC
3R	6458723	3R_6458723_SNP [dm3] 3R_10633001_SNP [dm6]	A	G	1.435e^-4	0.815	INTRON hth	TF binding site mE1_TFBS_cad
2R	14570239	2R_14570239_SNP [dm3] 2R_18682734_SNP [dm6]	A	G	1.436e^-4	0.815	SYNONYMOUS_CODING CG44434 UTR_5_PRIME CG44435
2R	9056584	2R_9056584_SNP [dm3] 2R_13169079_SNP [dm6]	C	T	1.437e^-4	0.815	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4047252	2L_4047252_SNP [dm3] 2L_4047252_SNP [dm6]	C	G	1.437e^-4	0.815	INTRON ed
2R	20771944	2R_20771944_DEL [dm3] 2R_24884421_DEL [dm6]	TTC	T	1.437e^-4	0.815	DOWNSTREAM NKAIN INTRON NKAIN
3R	11187358	3R_11187358_SNP [dm3] 3R_15361636_SNP [dm6]	T	A	1.440e^-4	0.815	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	18423626	3R_18423626_SNP [dm3] 3R_22597904_SNP [dm6]	T	A	1.444e^-4	0.815	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5469023	X_5469023_SNP [dm3] X_5574990_SNP [dm6]	A	T	1.447e^-4	0.815	INTERGENIC
2L	9463504	2L_9463504_SNP [dm3] 2L_9463504_SNP [dm6]	A	C	1.460e^-4	0.82	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	8864676	3R_8864676_SNP [dm3] 3R_13038954_SNP [dm6]	A	G	1.487e^-4	0.825	SYNONYMOUS_CODING CG11668 DOWNSTREAM ry
2R	14766161	2R_14766161_SNP [dm3] 2R_18878656_SNP [dm6]	T	G	1.491e^-4	0.825	INTRON sano	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19144785	2R_19144785_SNP [dm3] 2R_23257262_SNP [dm6]	T	A	1.492e^-4	0.825	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4047017	2L_4047017_SNP [dm3] 2L_4047017_SNP [dm6]	C	T	1.492e^-4	0.825	INTRON ed
2L	9464460	2L_9464460_SNP [dm3] 2L_9464460_SNP [dm6]	A	T	1.494e^-4	0.825	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15901279	2R_15901279_SNP [dm3] 2R_20013774_SNP [dm6]	G	A	1.499e^-4	0.825	UPSTREAM CR44629 INTERGENIC
2R	11587930	2R_11587930_SNP [dm3] 2R_15700425_SNP [dm6]	T	G	1.503e^-4	0.825	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23192304	3R_23192304_SNP [dm3] 3R_27366582_SNP [dm6]	G	A	1.508e^-4	0.825	DOWNSTREAM CR43476 INTRON CG42534
3R	26451562	3R_26451562_SNP [dm3] 3R_30625840_SNP [dm6]	T	C	1.510e^-4	0.825	UPSTREAM CR44136 INTERGENIC
X	5035471	X_5035471_SNP [dm3] X_5141438_SNP [dm6]	C	G	1.517e^-4	0.826	INTRON rg & 1 other
2R	11415377	2R_11415377_SNP [dm3] 2R_15527872_SNP [dm6]	G	C	1.533e^-4	0.826	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4567767	X_4567767_DEL [dm3] X_4673734_DEL [dm6]	CGTCAGACATTTTC...	C	1.534e^-4	0.826	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12748206	3R_12748206_SNP [dm3] 3R_16922484_SNP [dm6]	T	C	1.549e^-4	0.826	EXON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6208047	X_6208047_SNP [dm3] X_6314014_SNP [dm6]	T	C	1.552e^-4	0.826	INTRON CG15894
3R	24655197	3R_24655197_SNP [dm3] 3R_28829475_SNP [dm6]	A	G	1.555e^-4	0.826	INTRON WASp
2R	4478364	2R_4478364_SNP [dm3] 2R_8590859_SNP [dm6]	T	A	1.560e^-4	0.826	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9464441	2L_9464441_SNP [dm3] 2L_9464441_SNP [dm6]	G	T	1.564e^-4	0.826	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
3L	9283050	3L_9283050_SNP [dm3] 3L_9289950_SNP [dm6]	A	G	1.565e^-4	0.826	INTERGENIC
2R	15256421	2R_15256421_SNP [dm3] 2R_19368916_SNP [dm6]	G	A	1.569e^-4	0.826	INTRON CG9416
2L	16381665	2L_16381665_SNP [dm3] 2L_16381665_SNP [dm6]	T	A	1.574e^-4	0.826	INTERGENIC
3L	13868521	3L_13868521_INS [dm3] 3L_13875421_INS [dm6]	A	AA	1.574e^-4	0.826	INTRON dysc
3R	21411766	3R_21411766_SNP [dm3] 3R_25586044_SNP [dm6]	G	C	1.576e^-4	0.826	INTRON msi
3L	719844	3L_719844_SNP [dm3] 3L_719844_SNP [dm6]	C	T	1.597e^-4	0.826	INTERGENIC
3R	11187366	3R_11187366_SNP [dm3] 3R_15361644_SNP [dm6]	G	C	1.598e^-4	0.826	UTR_5_PRIME ldlCp UPSTREAM Trax	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17102795	2R_17102795_SNP [dm3] 2R_21215290_SNP [dm6]	C	G	1.611e^-4	0.826	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
X	17883851	X_17883851_SNP [dm3] X_17989818_SNP [dm6]	A	C	1.614e^-4	0.826	INTRON Sh
X	5862494	X_5862494_DEL [dm3] X_5968461_DEL [dm6]	AA	A	1.626e^-4	0.826	INTRON Grip
3R	13032601	3R_13032601_SNP [dm3] 3R_17206879_SNP [dm6]	C	T	1.631e^-4	0.826	INTERGENIC
2R	9056675	2R_9056675_SNP [dm3] 2R_13169170_SNP [dm6]	C	A	1.632e^-4	0.826	NON_SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20748905	2R_20748905_DEL [dm3] 2R_24861382_DEL [dm6]	ACGTTTCCCTA...	A	1.634e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23629817	3R_23629817_SNP [dm3] 3R_27804095_SNP [dm6]	C	A	1.635e^-4	0.826	INTRON CG34353
2L	6583789	2L_6583789_SNP [dm3] 2L_6583789_SNP [dm6]	C	G	1.639e^-4	0.826	INTRON CG11319
3R	11596080	3R_11596080_SNP [dm3] 3R_15770358_SNP [dm6]	A	T	1.639e^-4	0.826	INTERGENIC
2L	21014919	2L_21014919_SNP [dm3] 2L_21014919_SNP [dm6]	G	A	1.660e^-4	0.826	INTRON CG42238
3L	2026275	3L_2026275_SNP [dm3] 3L_2026275_SNP [dm6]	A	G	1.668e^-4	0.826	UPSTREAM CG34259 INTERGENIC
2R	9056728	2R_9056728_SNP [dm3] 2R_13169223_SNP [dm6]	C	T	1.669e^-4	0.826	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4628264	3L_4628264_SNP [dm3] 3L_4628264_SNP [dm6]	C	T	1.675e^-4	0.826	SYNONYMOUS_CODING Rpd3	TF binding site mE1_TFBS_sens
3L	1709337	3L_1709337_SNP [dm3] 3L_1709337_SNP [dm6]	T	C	1.683e^-4	0.826	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	10482709	2R_10482709_SNP [dm3] 2R_14595204_SNP [dm6]	G	C	1.685e^-4	0.826	UTR_3_PRIME CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
X	16612621	X_16612621_SNP [dm3] X_16718588_SNP [dm6]	G	A	1.687e^-4	0.826	INTRON CG34325
X	5862686	X_5862686_SNP [dm3] X_5968653_SNP [dm6]	G	A	1.688e^-4	0.826	INTRON Grip
2R	9844167	2R_9844167_SNP [dm3] 2R_13956662_SNP [dm6]	T	G	1.696e^-4	0.826	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	20685769	3L_20685769_SNP [dm3] 3L_20692669_SNP [dm6]	C	A	1.700e^-4	0.826	UTR_3_PRIME kni	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	9236844	3L_9236844_SNP [dm3] 3L_9243744_SNP [dm6]	C	T	1.701e^-4	0.826	INTERGENIC
2R	17102870	2R_17102870_SNP [dm3] 2R_21215365_SNP [dm6]	T	C	1.712e^-4	0.826	UPSTREAM CG4302 DOWNSTREAM CG15661 INTERGENIC
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	1.715e^-4	0.826	INTRON Ih
2R	17323312	2R_17323312_SNP [dm3] 2R_21435807_SNP [dm6]	C	T	1.722e^-4	0.826	INTRON Sdc
2R	8930727	2R_8930727_SNP [dm3] 2R_13043222_SNP [dm6]	A	T	1.737e^-4	0.826	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2L	21011063	2L_21011063_SNP [dm3] 2L_21011063_SNP [dm6]	G	C	1.737e^-4	0.826	INTRON CG42238
X	8422841	X_8422841_SNP [dm3] X_8528808_SNP [dm6]	T	A	1.738e^-4	0.826	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12524150	3R_12524150_SNP [dm3] 3R_16698428_SNP [dm6]	T	C	1.743e^-4	0.826	INTRON Ubx	regulatory region REDfly_CRMs
2R	14540670	2R_14540670_SNP [dm3] 2R_18653165_SNP [dm6]	G	A	1.748e^-4	0.826	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18999479	2R_18999479_SNP [dm3] 2R_23111956_SNP [dm6]	C	G	1.763e^-4	0.826	UPSTREAM CR44781 INTERGENIC
3R	3092002	3R_3092002_DEL [dm3] 3R_7266280_DEL [dm6]	TT	T	1.767e^-4	0.826	UPSTREAM Gld INTRON Syt4	TF binding site BDTNP1_TFBS_twi
X	7467098	X_7467098_SNP [dm3] X_7573065_SNP [dm6]	G	T	1.770e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	4047575	2L_4047575_SNP [dm3] 2L_4047575_SNP [dm6]	A	T	1.783e^-4	0.826	INTRON ed
3L	19150473	3L_19150473_SNP [dm3] 3L_19157373_SNP [dm6]	T	G	1.784e^-4	0.826	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22878447	3R_22878447_SNP [dm3] 3R_27052725_SNP [dm6]	C	A	1.784e^-4	0.826	INTRON RYa-R
2R	20766227	2R_20766227_SNP [dm3] 2R_24878704_SNP [dm6]	C	T	1.785e^-4	0.826	SYNONYMOUS_CODING CG44247	TF binding site mE1_TFBS_chinmo
X	4679367	X_4679367_SNP [dm3] X_4785334_SNP [dm6]	A	G	1.789e^-4	0.826	SYNONYMOUS_CODING CG6978	TF binding site mE1_TFBS_chinmo
2L	3685407	2L_3685407_SNP [dm3] 2L_3685407_SNP [dm6]	T	A	1.794e^-4	0.826	INTRON CG34340
2L	4047583	2L_4047583_SNP [dm3] 2L_4047583_SNP [dm6]	C	A	1.802e^-4	0.826	INTRON ed
3R	22485667	3R_22485667_SNP [dm3] 3R_26659945_SNP [dm6]	C	T	1.803e^-4	0.826	INTRON beat-VII
3R	19705332	3R_19705332_INS [dm3] 3R_23879610_INS [dm6]	T	TATTATT	1.803e^-4	0.826	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	1838839	2R_1838839_DEL [dm3] 2R_5951334_DEL [dm6]	CTTCC	C	1.809e^-4	0.826	INTERGENIC
3R	14343791	3R_14343791_SNP [dm3] 3R_18518069_SNP [dm6]	C	T	1.813e^-4	0.826	INTRON fru
2L	21004487	2L_21004487_SNP [dm3] 2L_21004487_SNP [dm6]	C	G	1.817e^-4	0.826	INTRON CG42238	TF binding site mE1_TFBS_inv
2R	9056524	2R_9056524_SNP [dm3] 2R_13169019_SNP [dm6]	A	G	1.840e^-4	0.826	SYNONYMOUS_CODING Spt-I UPSTREAM GLaz EXON CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	20910216	2R_20910216_DEL [dm3] 2R_25022693_DEL [dm6]	TCCGCAATTCATACGGAGTA...	T	1.841e^-4	0.826	INTRON uzip	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	4290870	X_4290870_SNP [dm3] X_4396837_SNP [dm6]	T	C	1.847e^-4	0.826	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11395025	2L_11395025_SNP [dm3] 2L_11395025_SNP [dm6]	G	C	1.851e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
2R	19345973	2R_19345973_SNP [dm3] 2R_23458450_SNP [dm6]	G	A	1.861e^-4	0.826	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo
3L	2285397	3L_2285397_SNP [dm3] 3L_2285397_SNP [dm6]	G	C	1.869e^-4	0.826	INTRON MsR2
2R	20771481	2R_20771481_SNP [dm3] 2R_24883958_SNP [dm6]	A	T	1.872e^-4	0.826	UTR_3_PRIME NKAIN INTRON NKAIN
X	20738902	X_20738902_DEL [dm3] X_20867875_DEL [dm6]	TATTTA	T	1.883e^-4	0.826	DOWNSTREAM CG1314 INTRON shakB
2R	19000347	2R_19000347_SNP [dm3] 2R_23112824_SNP [dm6]	C	T	1.884e^-4	0.826	DOWNSTREAM CR44782 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22238643	X_22238643_INS [dm3] X_22836807_INS [dm6]	G	GCCTAT	1.902e^-4	0.826	UPSTREAM fog INTRON fog & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4047582	2L_4047582_SNP [dm3] 2L_4047582_SNP [dm6]	G	C	1.926e^-4	0.826	INTRON ed
3R	15833221	3R_15833221_SNP [dm3] 3R_20007499_SNP [dm6]	G	T	1.926e^-4	0.826	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	5884509	X_5884509_DEL [dm3] X_5990476_DEL [dm6]	CC	C	1.932e^-4	0.826	UTR_5_PRIME CG5966 INTRON CG5966
3R	21385631	3R_21385631_SNP [dm3] 3R_25559909_SNP [dm6]	G	C	1.936e^-4	0.826	INTRON msi
X	7801306	X_7801306_SNP [dm3] X_7907273_SNP [dm6]	A	G	1.936e^-4	0.826	SYNONYMOUS_CODING dpr14
X	7974124	X_7974124_SNP [dm3] X_8080091_SNP [dm6]	T	C	1.950e^-4	0.826	INTRON CG2254
2R	4478365	2R_4478365_SNP [dm3] 2R_8590860_SNP [dm6]	T	C	1.961e^-4	0.826	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	5941280	X_5941280_SNP [dm3] X_6047247_SNP [dm6]	G	A	1.966e^-4	0.826	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
2L	5105175	2L_5105175_SNP [dm3] 2L_5105175_SNP [dm6]	G	T	1.968e^-4	0.826	INTRON Msp300
3R	6791783	3R_6791783_SNP [dm3] 3R_10966061_SNP [dm6]	A	C	1.969e^-4	0.826	INTERGENIC
2L	14733438	2L_14733438_SNP [dm3] 2L_14733438_SNP [dm6]	G	C	1.976e^-4	0.826	UPSTREAM CR44857 INTERGENIC
2L	9396746	2L_9396746_INS [dm3] 2L_9396746_INS [dm6]	C	CC	1.977e^-4	0.826	DOWNSTREAM CG4438 INTRON Shawl
2R	17903806	2R_17903806_SNP [dm3] 2R_22016301_SNP [dm6]	A	G	1.988e^-4	0.826	INTRON CG34370
2R	20772038	2R_20772038_SNP [dm3] 2R_24884515_SNP [dm6]	C	T	1.998e^-4	0.826	DOWNSTREAM NKAIN INTRON NKAIN
3R	10217534	3R_10217534_SNP [dm3] 3R_14391812_SNP [dm6]	C	A	2.012e^-4	0.826	UTR_3_PRIME cv-c	TF binding site mE1_TFBS_bab1 mE1_TFBS_ttk mE1_TFBS_zfh1
3L	2285238	3L_2285238_SNP [dm3] 3L_2285238_SNP [dm6]	G	T	2.013e^-4	0.826	INTRON MsR2
3R	12592237	3R_12592237_SNP [dm3] 3R_16766515_SNP [dm6]	A	T	2.022e^-4	0.826	UPSTREAM tre-1 INTRON bxd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	8422802	X_8422802_SNP [dm3] X_8528769_SNP [dm6]	G	A	2.027e^-4	0.826	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17315472	2R_17315472_SNP [dm3] 2R_21427967_SNP [dm6]	G	T	2.031e^-4	0.826	INTRON Sdc
3R	20977622	3R_20977622_SNP [dm3] 3R_25151900_SNP [dm6]	A	T	2.037e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17320524	2R_17320524_SNP [dm3] 2R_21433019_SNP [dm6]	A	C	2.048e^-4	0.826	INTRON Sdc
3L	11014010	3L_11014010_SNP [dm3] 3L_11020910_SNP [dm6]	G	A	2.050e^-4	0.826	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15086012	2L_15086012_SNP [dm3] 2L_15086012_SNP [dm6]	C	G	2.054e^-4	0.826	INTRON CG15270
3L	8425631	3L_8425631_SNP [dm3] 3L_8432531_SNP [dm6]	T	C	2.058e^-4	0.826	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
2L	11230111	2L_11230111_SNP [dm3] 2L_11230111_SNP [dm6]	T	C	2.061e^-4	0.826	INTRON ab
2R	18626712	2R_18626712_SNP [dm3] 2R_22739207_SNP [dm6]	A	C	2.063e^-4	0.826	INTRON jbug
X	19510229	X_19510229_SNP [dm3] X_19616196_SNP [dm6]	G	T	2.066e^-4	0.826	UTR_5_PRIME CG14210 DOWNSTREAM Shawn & 3 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	9289732	2R_9289732_SNP [dm3] 2R_13402227_SNP [dm6]	T	C	2.080e^-4	0.826	INTERGENIC
X	17648417	X_17648417_SNP [dm3] X_17754384_SNP [dm6]	A	T	2.090e^-4	0.826	INTERGENIC
2R	17903812	2R_17903812_SNP [dm3] 2R_22016307_SNP [dm6]	A	G	2.115e^-4	0.826	INTRON CG34370
2L	9973184	2L_9973184_SNP [dm3] 2L_9973184_SNP [dm6]	A	T	2.115e^-4	0.826	INTERGENIC
3L	1205126	3L_1205126_SNP [dm3] 3L_1205126_SNP [dm6]	T	A	2.122e^-4	0.826	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2L	7250635	2L_7250635_SNP [dm3] 2L_7250635_SNP [dm6]	A	G	2.122e^-4	0.826	UTR_3_PRIME CG13786
X	17648409	X_17648409_SNP [dm3] X_17754376_SNP [dm6]	G	A	2.129e^-4	0.826	INTERGENIC
3L	9285056	3L_9285056_SNP [dm3] 3L_9291956_SNP [dm6]	A	T	2.136e^-4	0.826	INTERGENIC
2R	11587869	2R_11587869_SNP [dm3] 2R_15700364_SNP [dm6]	C	T	2.137e^-4	0.826	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3556637	3L_3556637_SNP [dm3] 3L_3556637_SNP [dm6]	T	A	2.137e^-4	0.826	INTRON Eip63E	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	12279995	2L_12279995_SNP [dm3] 2L_12279995_SNP [dm6]	T	G	2.140e^-4	0.826	INTRON aret
2L	12280010	2L_12280010_SNP [dm3] 2L_12280010_SNP [dm6]	T	C	2.140e^-4	0.826	INTRON aret
X	12532285	X_12532285_SNP [dm3] X_12638252_SNP [dm6]	T	A	2.144e^-4	0.826	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	9183809	2L_9183809_SNP [dm3] 2L_9183809_SNP [dm6]	C	G	2.149e^-4	0.826	INTRON tai	TF binding site mE1_TFBS_HSA
2R	20765172	2R_20765172_SNP [dm3] 2R_24877649_SNP [dm6]	A	G	2.152e^-4	0.826	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5317766	2R_5317766_SNP [dm3] 2R_9430261_SNP [dm6]	A	T	2.155e^-4	0.826	INTRON Pdk
3R	9230798	3R_9230798_SNP [dm3] 3R_13405076_SNP [dm6]	A	G	2.157e^-4	0.826	UPSTREAM yellow-e3 DOWNSTREAM yellow-e2 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	17806099	2R_17806099_SNP [dm3] 2R_21918594_SNP [dm6]	C	T	2.162e^-4	0.826	INTRON Fili
3L	3749255	3L_3749255_MNP [dm3] 3L_3749255_MNP [dm6]	AAAA	TCGG	2.164e^-4	0.826	INTRON CG32264
2R	4160845	2R_4160845_SNP [dm3] 2R_8273340_SNP [dm6]	G	T	2.168e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	22208166	X_22208166_DEL [dm3] X_22806330_DEL [dm6]	TCA	T	2.174e^-4	0.826	DOWNSTREAM CR45464 INTERGENIC
2L	10442905	2L_10442905_DEL [dm3] 2L_10442905_DEL [dm6]	TG	T	2.176e^-4	0.826	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17022312	2R_17022312_SNP [dm3] 2R_21134807_SNP [dm6]	C	T	2.179e^-4	0.826	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5670524	3L_5670524_SNP [dm3] 3L_5677424_SNP [dm6]	C	A	2.187e^-4	0.826	INTRON sif	TF binding site mE1_TFBS_inv
2R	18999312	2R_18999312_SNP [dm3] 2R_23111789_SNP [dm6]	A	G	2.193e^-4	0.826	UPSTREAM CR44781 INTERGENIC
3R	12726802	3R_12726802_SNP [dm3] 3R_16901080_SNP [dm6]	C	T	2.195e^-4	0.826	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17246039	3R_17246039_SNP [dm3] 3R_21420317_SNP [dm6]	G	A	2.195e^-4	0.826	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15720621	2R_15720621_SNP [dm3] 2R_19833116_SNP [dm6]	G	A	2.197e^-4	0.826	DOWNSTREAM Toll-7 INTERGENIC
2R	3981957	2R_3981957_SNP [dm3] 2R_8094452_SNP [dm6]	G	C	2.199e^-4	0.826	INTRON CG8713	TF binding site BDTNP1_TFBS_sna
2L	1821225	2L_1821225_SNP [dm3] 2L_1821225_SNP [dm6]	A	G	2.200e^-4	0.826	DOWNSTREAM CG31933 INTERGENIC
3L	2392244	3L_2392244_SNP [dm3] 3L_2392244_SNP [dm6]	A	C	2.203e^-4	0.826	INTRON CG45186
X	917886	X_917886_SNP [dm3] X_1023853_SNP [dm6]	T	A	2.203e^-4	0.826	INTRON su_w[a]_ & 2 others
3L	2209241	3L_2209241_SNP [dm3] 3L_2209241_SNP [dm6]	T	G	2.207e^-4	0.826	INTERGENIC
3R	14454613	3R_14454613_INS [dm3] 3R_18628891_INS [dm6]	A	AA	2.211e^-4	0.826	UPSTREAM tRNA:CR31228 DOWNSTREAM CG14301 INTRON qin
2L	19286070	2L_19286070_SNP [dm3] 2L_19286070_SNP [dm6]	A	G	2.211e^-4	0.826	INTERGENIC
X	8681510	X_8681510_SNP [dm3] X_8787477_SNP [dm6]	G	T	2.214e^-4	0.826	INTRON Lim1
X	14904069	X_14904069_SNP [dm3] X_15010036_SNP [dm6]	A	T	2.216e^-4	0.826	DOWNSTREAM hiw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11180595	2R_11180595_SNP [dm3] 2R_15293090_SNP [dm6]	G	A	2.216e^-4	0.826	INTRON Trpm	TF binding site BDTNP1_TFBS_twi
3L	7721506	3L_7721506_SNP [dm3] 3L_7728406_SNP [dm6]	C	A	2.218e^-4	0.826	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	10451653	2L_10451653_SNP [dm3] 2L_10451653_SNP [dm6]	C	T	2.219e^-4	0.826	SYNONYMOUS_CODING ppk10
2L	4767559	2L_4767559_SNP [dm3] 2L_4767559_SNP [dm6]	C	T	2.220e^-4	0.826	INTRON CG15630
2L	6583784	2L_6583784_INS [dm3] 2L_6583784_INS [dm6]	A	CC	2.220e^-4	0.826	INTRON CG11319
2L	9973180	2L_9973180_INS [dm3] 2L_9973180_INS [dm6]	T	TCGGGGCACTA...	2.221e^-4	0.826	INTERGENIC
2L	10180856	2L_10180856_SNP [dm3] 2L_10180856_SNP [dm6]	C	T	2.223e^-4	0.826	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11092085	2L_11092085_SNP [dm3] 2L_11092085_SNP [dm6]	A	C	2.223e^-4	0.826	SYNONYMOUS_CODING CG4705
2L	12280033	2L_12280033_SNP [dm3] 2L_12280033_SNP [dm6]	A	G	2.229e^-4	0.826	INTRON aret
3L	5927397	3L_5927397_SNP [dm3] 3L_5934297_SNP [dm6]	G	A	2.232e^-4	0.826	SYNONYMOUS_CODING CG33993
X	12532280	X_12532280_SNP [dm3] X_12638247_SNP [dm6]	A	T	2.246e^-4	0.826	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2R	16766867	2R_16766867_SNP [dm3] 2R_20879362_SNP [dm6]	T	G	2.249e^-4	0.826	UPSTREAM Cib2 DOWNSTREAM Ipk1 INTERGENIC
2L	801712	2L_801712_DEL [dm3] 2L_801712_DEL [dm6]	CCTTCCTAG	C	2.253e^-4	0.826	INTERGENIC
3R	17638276	3R_17638276_SNP [dm3] 3R_21812554_SNP [dm6]	T	C	2.257e^-4	0.826	INTRON CASK
3L	5055069	3L_5055069_SNP [dm3] 3L_5055069_SNP [dm6]	G	A	2.265e^-4	0.826	INTRON Con
3R	23564238	3R_23564238_SNP [dm3] 3R_27738516_SNP [dm6]	C	T	2.271e^-4	0.826	INTRON Ets98B
X	12532220	X_12532220_SNP [dm3] X_12638187_SNP [dm6]	A	C	2.276e^-4	0.826	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	2901372	2L_2901372_SNP [dm3] 2L_2901372_SNP [dm6]	C	A	2.277e^-4	0.826	INTRON lilli
2L	9464032	2L_9464032_SNP [dm3] 2L_9464032_SNP [dm6]	G	A	2.279e^-4	0.826	UTR_3_PRIME numb DOWNSTREAM numb
3R	6538179	3R_6538179_SNP [dm3] 3R_10712457_SNP [dm6]	C	T	2.279e^-4	0.826	INTERGENIC
3R	27586049	3R_27586049_SNP [dm3] 3R_31760327_SNP [dm6]	G	T	2.279e^-4	0.826	NON_SYNONYMOUS_CODING Smvt DOWNSTREAM CR44263	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22878445	3R_22878445_SNP [dm3] 3R_27052723_SNP [dm6]	T	G	2.282e^-4	0.826	INTRON RYa-R
2R	7208560	2R_7208560_SNP [dm3] 2R_11321055_SNP [dm6]	G	A	2.298e^-4	0.826	SYNONYMOUS_CODING Or47b
2L	19286136	2L_19286136_SNP [dm3] 2L_19286136_SNP [dm6]	A	T	2.302e^-4	0.826	INTERGENIC
3L	2465503	3L_2465503_SNP [dm3] 3L_2465503_SNP [dm6]	A	T	2.328e^-4	0.826	SYNONYMOUS_CODING CG45186 DOWNSTREAM CG45186
2L	2852279	2L_2852279_SNP [dm3] 2L_2852279_SNP [dm6]	T	C	2.338e^-4	0.826	INTRON CG3104
X	18723292	X_18723292_SNP [dm3] X_18829259_SNP [dm6]	T	A	2.342e^-4	0.826	UTR_3_PRIME CG42450
2R	20753838	2R_20753838_SNP [dm3] 2R_24866315_SNP [dm6]	C	A	2.345e^-4	0.826	INTERGENIC
3L	8142652	3L_8142652_SNP [dm3] 3L_8149552_SNP [dm6]	G	C	2.352e^-4	0.826	INTRON CG13676
3R	19973835	3R_19973835_SNP [dm3] 3R_24148113_SNP [dm6]	A	G	2.356e^-4	0.826	SYNONYMOUS_CODING Slimp DOWNSTREAM Kal1 & 1 other	TF binding site mE1_TFBS_sens
2R	10920927	2R_10920927_SNP [dm3] 2R_15033422_SNP [dm6]	A	G	2.359e^-4	0.826	INTRON hbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15886474	3L_15886474_SNP [dm3] 3L_15893374_SNP [dm6]	T	C	2.366e^-4	0.826	INTRON pHCl
X	13528352	X_13528352_SNP [dm3] X_13634319_SNP [dm6]	G	A	2.370e^-4	0.826	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12333152	2L_12333152_SNP [dm3] 2L_12333152_SNP [dm6]	A	G	2.371e^-4	0.826	INTERGENIC
2R	12038770	2R_12038770_SNP [dm3] 2R_16151265_SNP [dm6]	C	T	2.380e^-4	0.826	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8745170	2L_8745170_SNP [dm3] 2L_8745170_SNP [dm6]	G	T	2.383e^-4	0.826	INTERGENIC
X	4795783	X_4795783_SNP [dm3] X_4901750_SNP [dm6]	C	T	2.386e^-4	0.826	INTRON CG42594
2R	14764007	2R_14764007_INS [dm3] 2R_18876502_INS [dm6]	A	ATAAGA	2.391e^-4	0.826	INTERGENIC
3L	7872487	3L_7872487_SNP [dm3] 3L_7879387_SNP [dm6]	G	C	2.393e^-4	0.826	INTRON CG32365
X	19603687	X_19603687_SNP [dm3] X_19709654_SNP [dm6]	C	T	2.399e^-4	0.826	INTRON meso18E
2L	9392483	2L_9392483_SNP [dm3] 2L_9392483_SNP [dm6]	G	T	2.400e^-4	0.826	DOWNSTREAM Aldh INTRON Shawl
2R	16817827	2R_16817827_SNP [dm3] 2R_20930322_SNP [dm6]	A	T	2.417e^-4	0.826	INTRON Rx
3L	5058713	3L_5058713_SNP [dm3] 3L_5058713_SNP [dm6]	C	T	2.423e^-4	0.826	INTRON Con
2L	3928559	2L_3928559_DEL [dm3] 2L_3928559_DEL [dm6]	TATATGTAT	T	2.428e^-4	0.826	INTRON fred
2R	14281270	2R_14281270_SNP [dm3] 2R_18393765_SNP [dm6]	T	A	2.432e^-4	0.826	NON_SYNONYMOUS_CODING Idgf5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	20767373	2R_20767373_SNP [dm3] 2R_24879850_SNP [dm6]	T	A	2.436e^-4	0.826	UTR_3_PRIME CG44247
2R	20765639	2R_20765639_SNP [dm3] 2R_24878116_SNP [dm6]	G	A	2.446e^-4	0.826	INTRON CG44247	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19164453	2R_19164453_SNP [dm3] 2R_23276930_SNP [dm6]	C	T	2.452e^-4	0.826	INTERGENIC
2L	13876886	2L_13876886_SNP [dm3] 2L_13876886_SNP [dm6]	A	T	2.454e^-4	0.826	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd
3L	8851064	3L_8851064_SNP [dm3] 3L_8857964_SNP [dm6]	A	C	2.458e^-4	0.826	INTRON dally
X	4101523	X_4101523_SNP [dm3] X_4207490_SNP [dm6]	C	T	2.461e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1205036	3L_1205036_SNP [dm3] 3L_1205036_SNP [dm6]	T	C	2.462e^-4	0.826	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
X	18734667	X_18734667_SNP [dm3] X_18840634_SNP [dm6]	C	G	2.464e^-4	0.826	SYNONYMOUS_CODING Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1432587	2L_1432587_SNP [dm3] 2L_1432587_SNP [dm6]	T	C	2.468e^-4	0.826	UPSTREAM snRNA:U3:22A INTERGENIC
3L	2470533	3L_2470533_SNP [dm3] 3L_2470533_SNP [dm6]	T	C	2.472e^-4	0.826	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10994847	3L_10994847_INS [dm3] 3L_11001747_INS [dm6]	T	TGGTTT	2.476e^-4	0.826	UPSTREAM snoRNA:Me18S-G962 INTRON klu
X	18212097	X_18212097_SNP [dm3] X_18318064_SNP [dm6]	T	A	2.476e^-4	0.826	INTRON CG6023
2R	16988646	2R_16988646_SNP [dm3] 2R_21101141_SNP [dm6]	G	A	2.477e^-4	0.826	NON_SYNONYMOUS_CODING CG34396 UPSTREAM ktub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	11898847	3L_11898847_SNP [dm3] 3L_11905747_SNP [dm6]	G	A	2.482e^-4	0.826	INTRON CG44837
3L	1205689	3L_1205689_DEL [dm3] 3L_1205689_DEL [dm6]	ACGA	A	2.485e^-4	0.826	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14864436	2L_14864436_SNP [dm3] 2L_14864436_SNP [dm6]	T	A	2.495e^-4	0.826	INTERGENIC
2R	17904144	2R_17904144_SNP [dm3] 2R_22016639_SNP [dm6]	C	T	2.498e^-4	0.826	INTRON CG34370
2L	12184989	2L_12184989_SNP [dm3] 2L_12184989_SNP [dm6]	T	G	2.501e^-4	0.826	INTRON aret
2L	12184992	2L_12184992_SNP [dm3] 2L_12184992_SNP [dm6]	T	A	2.501e^-4	0.826	INTRON aret
3L	7721563	3L_7721563_SNP [dm3] 3L_7728463_SNP [dm6]	T	C	2.509e^-4	0.826	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2L	4048892	2L_4048892_SNP [dm3] 2L_4048892_SNP [dm6]	T	A	2.513e^-4	0.826	INTRON ed
2R	11156269	2R_11156269_SNP [dm3] 2R_15268764_SNP [dm6]	T	C	2.514e^-4	0.826	INTRON Trpm
3R	15240427	3R_15240427_SNP [dm3] 3R_19414705_SNP [dm6]	C	G	2.518e^-4	0.826	INTRON CG31221
3L	7088758	3L_7088758_SNP [dm3] 3L_7095658_SNP [dm6]	A	T	2.519e^-4	0.826	INTRON form3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	8351860	2L_8351860_SNP [dm3] 2L_8351860_SNP [dm6]	G	A	2.521e^-4	0.826	UPSTREAM Mur29B DOWNSTREAM CG7778 INTERGENIC
2L	9776924	2L_9776924_SNP [dm3] 2L_9776924_SNP [dm6]	C	T	2.526e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11386527	2L_11386527_SNP [dm3] 2L_11386527_SNP [dm6]	A	G	2.528e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
3R	22878443	3R_22878443_SNP [dm3] 3R_27052721_SNP [dm6]	C	A	2.539e^-4	0.826	INTRON RYa-R
3L	16401587	3L_16401587_SNP [dm3] 3L_16408487_SNP [dm6]	C	G	2.540e^-4	0.826	UPSTREAM fax INTRON fax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	11489408	2L_11489408_SNP [dm3] 2L_11489408_SNP [dm6]	C	A	2.546e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	1674304	3L_1674304_SNP [dm3] 3L_1674304_SNP [dm6]	C	A	2.550e^-4	0.826	UPSTREAM CG7991 INTERGENIC
3L	15284967	3L_15284967_SNP [dm3] 3L_15291867_SNP [dm6]	G	C	2.561e^-4	0.826	INTERGENIC
X	22151346	X_22151346_SNP [dm3] X_22749510_SNP [dm6]	T	C	2.586e^-4	0.826	INTRON CR44997
2L	11091907	2L_11091907_SNP [dm3] 2L_11091907_SNP [dm6]	G	T	2.588e^-4	0.826	DOWNSTREAM CG16854 INTRON CG4705
2L	1821224	2L_1821224_SNP [dm3] 2L_1821224_SNP [dm6]	A	T	2.594e^-4	0.826	DOWNSTREAM CG31933 INTERGENIC
3R	13809795	3R_13809795_SNP [dm3] 3R_17984073_SNP [dm6]	C	T	2.595e^-4	0.826	INTRON cpo
X	5497334	X_5497334_SNP [dm3] X_5603301_SNP [dm6]	A	G	2.598e^-4	0.826	INTRON Vsx1
2R	4008186	2R_4008186_SNP [dm3] 2R_8120681_SNP [dm6]	C	T	2.599e^-4	0.826	INTRON Asap
3L	5474195	3L_5474195_SNP [dm3] 3L_5481095_SNP [dm6]	A	T	2.602e^-4	0.826	SYNONYMOUS_CODING CG4835
2R	5317377	2R_5317377_SNP [dm3] 2R_9429872_SNP [dm6]	G	A	2.602e^-4	0.826	INTRON Pdk
3L	11795096	3L_11795096_SNP [dm3] 3L_11801996_SNP [dm6]	A	T	2.603e^-4	0.826	UTR_3_PRIME CG42255 UPSTREAM tRNA:CR32093
3R	27180875	3R_27180875_SNP [dm3] 3R_31355153_SNP [dm6]	C	G	2.616e^-4	0.826	INTRON CG34347
2L	9558609	2L_9558609_SNP [dm3] 2L_9558609_SNP [dm6]	G	C	2.617e^-4	0.826	INTRON jp
X	13528208	X_13528208_INS [dm3] X_13634175_INS [dm6]	T	TATT	2.618e^-4	0.826	INTRON NFAT	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20763573	2R_20763573_SNP [dm3] 2R_24876050_SNP [dm6]	A	C	2.622e^-4	0.826	UPSTREAM CG44247 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	14198993	2R_14198993_SNP [dm3] 2R_18311488_SNP [dm6]	G	A	2.624e^-4	0.826	UPSTREAM Tango8 INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18286320	2R_18286320_SNP [dm3] 2R_22398815_SNP [dm6]	A	G	2.627e^-4	0.826	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	11092179	2L_11092179_SNP [dm3] 2L_11092179_SNP [dm6]	T	G	2.631e^-4	0.826	INTRON CG4705
2L	11092189	2L_11092189_SNP [dm3] 2L_11092189_SNP [dm6]	T	C	2.631e^-4	0.826	INTRON CG4705
3R	7467118	3R_7467118_SNP [dm3] 3R_11641396_SNP [dm6]	G	A	2.635e^-4	0.826	INTRON Csk
X	18212307	X_18212307_SNP [dm3] X_18318274_SNP [dm6]	A	T	2.636e^-4	0.826	INTRON CG6023
3R	22993699	3R_22993699_SNP [dm3] 3R_27167977_SNP [dm6]	G	T	2.639e^-4	0.826	DOWNSTREAM spn-D INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11188653	3R_11188653_SNP [dm3] 3R_15362931_SNP [dm6]	C	A	2.643e^-4	0.826	NON_SYNONYMOUS_CODING CG6171 UTR_3_PRIME CG6171 DOWNSTREAM CG34404 & 1 other
X	16612166	X_16612166_SNP [dm3] X_16718133_SNP [dm6]	A	G	2.645e^-4	0.826	INTRON CG34325
3R	18760788	3R_18760788_SNP [dm3] 3R_22935066_SNP [dm6]	G	C	2.646e^-4	0.826	INTRON klg
3L	2470520	3L_2470520_SNP [dm3] 3L_2470520_SNP [dm6]	T	C	2.648e^-4	0.826	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	2285235	3L_2285235_SNP [dm3] 3L_2285235_SNP [dm6]	A	G	2.649e^-4	0.826	INTRON MsR2
3L	2285263	3L_2285263_SNP [dm3] 3L_2285263_SNP [dm6]	C	G	2.649e^-4	0.826	INTRON MsR2
2L	1821238	2L_1821238_SNP [dm3] 2L_1821238_SNP [dm6]	G	A	2.651e^-4	0.826	DOWNSTREAM CG31933 INTERGENIC
2L	6894222	2L_6894222_SNP [dm3] 2L_6894222_SNP [dm6]	A	G	2.655e^-4	0.826	INTRON Nlg2
3L	8300383	3L_8300383_INS [dm3] 3L_8307283_INS [dm6]	C	CAGCC	2.658e^-4	0.826	UTR_3_PRIME BI-1 UPSTREAM Gr66a	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	21407180	3L_21407180_SNP [dm3] 3L_21414080_SNP [dm6]	G	A	2.660e^-4	0.826	INTRON rgn	TF binding site mE1_TFBS_cad
2L	17865190	2L_17865190_SNP [dm3] 2L_17865190_SNP [dm6]	G	T	2.662e^-4	0.826	INTRON CadN2
X	15413923	X_15413923_SNP [dm3] X_15519890_SNP [dm6]	C	T	2.663e^-4	0.826	INTRON Ac13E
X	3532494	X_3532494_SNP [dm3] X_3638461_SNP [dm6]	G	A	2.666e^-4	0.826	INTRON AstA-R1
2R	14323311	2R_14323311_SNP [dm3] 2R_18435806_SNP [dm6]	G	A	2.667e^-4	0.826	INTRON CG30118	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17805498	2R_17805498_DEL [dm3] 2R_21917993_DEL [dm6]	TG	A	2.683e^-4	0.826	INTRON Fili
2L	13701765	2L_13701765_SNP [dm3] 2L_13701765_SNP [dm6]	A	C	2.692e^-4	0.826	INTRON CG31814
2R	8367956	2R_8367956_SNP [dm3] 2R_12480451_SNP [dm6]	G	A	2.695e^-4	0.826	INTRON Dh44-R2
3L	14494415	3L_14494415_SNP [dm3] 3L_14501315_SNP [dm6]	A	G	2.701e^-4	0.826	INTRON bbg	TF binding site BDTNP1_TFBS_prd
2R	19597776	2R_19597776_SNP [dm3] 2R_23710253_SNP [dm6]	A	G	2.714e^-4	0.826	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10481689	X_10481689_SNP [dm3] X_10587656_SNP [dm6]	A	G	2.717e^-4	0.826	INTERGENIC
3L	2285260	3L_2285260_SNP [dm3] 3L_2285260_SNP [dm6]	G	A	2.718e^-4	0.826	INTRON MsR2
3L	16451501	3L_16451501_SNP [dm3] 3L_16458401_SNP [dm6]	A	T	2.721e^-4	0.826	INTRON CG33158
X	13684530	X_13684530_DEL [dm3] X_13790497_DEL [dm6]	GAGTTGG	G	2.737e^-4	0.826	INTRON inaE
3L	6437734	3L_6437734_SNP [dm3] 3L_6444634_SNP [dm6]	G	A	2.739e^-4	0.826	INTRON CG42747
2L	11092191	2L_11092191_SNP [dm3] 2L_11092191_SNP [dm6]	T	C	2.740e^-4	0.826	INTRON CG4705
2R	10511999	2R_10511999_SNP [dm3] 2R_14624494_SNP [dm6]	G	A	2.740e^-4	0.826	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17043911	2R_17043911_SNP [dm3] 2R_21156406_SNP [dm6]	A	T	2.741e^-4	0.826	INTRON CG30389
2R	7687111	2R_7687111_SNP [dm3] 2R_11799606_SNP [dm6]	A	T	2.743e^-4	0.826	INTRON ths	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4478386	2R_4478386_SNP [dm3] 2R_8590881_SNP [dm6]	A	T	2.759e^-4	0.826	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10238635	3R_10238635_SNP [dm3] 3R_14412913_SNP [dm6]	T	A	2.762e^-4	0.826	INTRON cv-c
3L	16490079	3L_16490079_SNP [dm3] 3L_16496979_SNP [dm6]	C	T	2.777e^-4	0.826	UPSTREAM CG42514 & 1 other DOWNSTREAM CG33158 INTRON CG43373
2R	18392673	2R_18392673_SNP [dm3] 2R_22505168_SNP [dm6]	G	A	2.777e^-4	0.826	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	7721525	3L_7721525_SNP [dm3] 3L_7728425_SNP [dm6]	G	T	2.783e^-4	0.826	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
X	7800540	X_7800540_SNP [dm3] X_7906507_SNP [dm6]	A	C	2.786e^-4	0.826	SYNONYMOUS_CODING dpr14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	1294173	2R_1294173_SNP [dm3] 2R_5406668_SNP [dm6]	C	A	2.790e^-4	0.826	INTERGENIC	transposable element FlyBase
X	2534119	X_2534119_SNP [dm3] X_2640086_SNP [dm6]	T	A	2.798e^-4	0.826	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2008229	3L_2008229_INS [dm3] 3L_2008229_INS [dm6]	A	AGA	2.801e^-4	0.826	DOWNSTREAM CR44535 INTERGENIC
2R	20582568	2R_20582568_SNP [dm3] 2R_24695045_SNP [dm6]	T	C	2.804e^-4	0.826	UPSTREAM ST6Gal DOWNSTREAM Mid1 INTERGENIC
2R	15598059	2R_15598059_SNP [dm3] 2R_19710554_SNP [dm6]	G	T	2.808e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
3L	10340015	3L_10340015_MNP [dm3] 3L_10346915_MNP [dm6]	AATGT	TTGTC	2.812e^-4	0.826	INTERGENIC
3R	10238614	3R_10238614_SNP [dm3] 3R_14412892_SNP [dm6]	G	T	2.815e^-4	0.826	INTRON cv-c
2R	2790728	2R_2790728_SNP [dm3] 2R_6903223_SNP [dm6]	T	C	2.816e^-4	0.826	INTRON CG30158	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14928251	2R_14928251_SNP [dm3] 2R_19040746_SNP [dm6]	C	T	2.817e^-4	0.826	INTERGENIC
2R	12489069	2R_12489069_SNP [dm3] 2R_16601564_SNP [dm6]	C	A	2.823e^-4	0.826	INTRON CG8303
2L	3441803	2L_3441803_SNP [dm3] 2L_3441803_SNP [dm6]	G	A	2.826e^-4	0.826	INTERGENIC
2R	17419471	2R_17419471_SNP [dm3] 2R_21531966_SNP [dm6]	C	T	2.831e^-4	0.826	INTRON Egfr EXON CR44725
2L	19286157	2L_19286157_SNP [dm3] 2L_19286157_SNP [dm6]	A	T	2.831e^-4	0.826	INTERGENIC
2R	16482014	2R_16482014_SNP [dm3] 2R_20594509_SNP [dm6]	T	G	2.837e^-4	0.826	INTRON bl
X	2011421	X_2011421_SNP [dm3] X_2117388_SNP [dm6]	T	G	2.844e^-4	0.826	SYNONYMOUS_CODING ph-d	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11376979	2L_11376979_SNP [dm3] 2L_11376979_SNP [dm6]	T	C	2.848e^-4	0.826	INTERGENIC	regulatory region REDfly_CRMs
3L	21995881	3L_21995881_SNP [dm3] 3L_22002781_SNP [dm6]	G	A	2.848e^-4	0.826	INTERGENIC
X	9112282	X_9112282_SNP [dm3] X_9218249_SNP [dm6]	G	A	2.858e^-4	0.826	SYNONYMOUS_CODING t DOWNSTREAM CG15369
2R	14072021	2R_14072021_SNP [dm3] 2R_18184516_SNP [dm6]	C	T	2.861e^-4	0.826	UTR_3_PRIME CG33958 UPSTREAM CG5721	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9862093	2L_9862093_SNP [dm3] 2L_9862093_SNP [dm6]	A	G	2.864e^-4	0.826	INTRON nAChRalpha6
3R	23283722	3R_23283722_SNP [dm3] 3R_27458000_SNP [dm6]	A	G	2.869e^-4	0.826	INTERGENIC
3L	5058738	3L_5058738_SNP [dm3] 3L_5058738_SNP [dm6]	T	A	2.873e^-4	0.826	INTRON Con
2L	12204818	2L_12204818_SNP [dm3] 2L_12204818_SNP [dm6]	A	T	2.877e^-4	0.826	INTRON aret
2R	17330442	2R_17330442_SNP [dm3] 2R_21442937_SNP [dm6]	C	A	2.881e^-4	0.826	INTRON Sdc
2R	14162349	2R_14162349_SNP [dm3] 2R_18274844_SNP [dm6]	A	G	2.888e^-4	0.826	DOWNSTREAM Ote INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5609758	2L_5609758_SNP [dm3] 2L_5609758_SNP [dm6]	A	G	2.888e^-4	0.826	INTRON CG14010
2R	13687632	2R_13687632_SNP [dm3] 2R_17800127_SNP [dm6]	T	A	2.901e^-4	0.826	UTR_3_PRIME Dhit DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16243985	2R_16243985_INS [dm3] 2R_20356480_INS [dm6]	T	AA	2.902e^-4	0.826	INTERGENIC
3L	12613959	3L_12613959_SNP [dm3] 3L_12620859_SNP [dm6]	A	C	2.904e^-4	0.826	UTR_3_PRIME caup	TF binding site mE1_TFBS_cad
X	6901385	X_6901385_SNP [dm3] X_7007352_SNP [dm6]	C	A	2.919e^-4	0.826	INTRON Inx7
3R	10224537	3R_10224537_SNP [dm3] 3R_14398815_SNP [dm6]	C	G	2.927e^-4	0.826	INTRON cv-c
X	2534095	X_2534095_DEL [dm3] X_2640062_DEL [dm6]	CGT	C	2.931e^-4	0.826	INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5058715	3L_5058715_INS [dm3] 3L_5058715_INS [dm6]	T	TTT	2.933e^-4	0.826	INTRON Con
3L	5058711	3L_5058711_SNP [dm3] 3L_5058711_SNP [dm6]	T	A	2.939e^-4	0.826	INTRON Con
2L	12185274	2L_12185274_SNP [dm3] 2L_12185274_SNP [dm6]	C	A	2.940e^-4	0.826	INTRON aret
X	14237461	X_14237461_SNP [dm3] X_14343428_SNP [dm6]	G	A	2.942e^-4	0.826	INTRON dpr8
3L	11030702	3L_11030702_SNP [dm3] 3L_11037602_SNP [dm6]	A	T	2.945e^-4	0.826	INTRON CG43693	TF binding site mE1_TFBS_sens
3R	15242808	3R_15242808_SNP [dm3] 3R_19417086_SNP [dm6]	T	C	2.950e^-4	0.826	INTRON CG31221
2L	14865125	2L_14865125_SNP [dm3] 2L_14865125_SNP [dm6]	A	C	2.952e^-4	0.826	INTERGENIC
3R	17238114	3R_17238114_SNP [dm3] 3R_21412392_SNP [dm6]	C	T	2.952e^-4	0.826	INTRON lbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	26412137	3R_26412137_SNP [dm3] 3R_30586415_SNP [dm6]	A	G	2.952e^-4	0.826	SYNONYMOUS_CODING CG9717
X	2460216	X_2460216_SNP [dm3] X_2566183_SNP [dm6]	C	T	2.954e^-4	0.826	INTRON Pdfr
3L	2285232	3L_2285232_SNP [dm3] 3L_2285232_SNP [dm6]	T	G	2.956e^-4	0.826	INTRON MsR2
2L	11489409	2L_11489409_SNP [dm3] 2L_11489409_SNP [dm6]	T	A	2.959e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10481766	X_10481766_SNP [dm3] X_10587733_SNP [dm6]	T	C	2.967e^-4	0.826	INTERGENIC
3L	4925387	3L_4925387_SNP [dm3] 3L_4925387_SNP [dm6]	A	G	2.970e^-4	0.826	INTERGENIC
3L	2007379	3L_2007379_SNP [dm3] 3L_2007379_SNP [dm6]	A	G	2.971e^-4	0.826	INTERGENIC
2L	14863695	2L_14863695_SNP [dm3] 2L_14863695_SNP [dm6]	T	G	2.974e^-4	0.826	INTERGENIC
3R	3856749	3R_3856749_SNP [dm3] 3R_8031027_SNP [dm6]	C	T	2.981e^-4	0.826	UPSTREAM CG2747 INTRON CG10903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_Ubx
2R	16175402	2R_16175402_SNP [dm3] 2R_20287897_SNP [dm6]	C	T	2.988e^-4	0.826	NON_SYNONYMOUS_CODING CG34199 UPSTREAM CG16868 DOWNSTREAM Cpr56F
3L	4642832	3L_4642832_SNP [dm3] 3L_4642832_SNP [dm6]	A	G	2.999e^-4	0.826	INTRON axo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8323320	3L_8323320_SNP [dm3] 3L_8330220_SNP [dm6]	T	A	3.001e^-4	0.826	UTR_3_PRIME CG34462
X	2016831	X_2016831_SNP [dm3] X_2122798_SNP [dm6]	A	T	3.005e^-4	0.826	INTRON ph-d	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
2L	4485111	2L_4485111_SNP [dm3] 2L_4485111_SNP [dm6]	T	C	3.008e^-4	0.826	SYNONYMOUS_CODING dp
3R	12917545	3R_12917545_SNP [dm3] 3R_17091823_SNP [dm6]	G	A	3.008e^-4	0.826	UTR_3_PRIME cal1 & 1 other
X	10278776	X_10278776_SNP [dm3] X_10384743_SNP [dm6]	A	G	3.010e^-4	0.826	SYNONYMOUS_CODING Psf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Ubx
2L	15359216	2L_15359216_SNP [dm3] 2L_15359216_SNP [dm6]	T	A	3.016e^-4	0.826	INTERGENIC
3L	7721503	3L_7721503_SNP [dm3] 3L_7728403_SNP [dm6]	T	G	3.018e^-4	0.826	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
2R	17944752	2R_17944752_SNP [dm3] 2R_22057247_SNP [dm6]	C	T	3.023e^-4	0.826	SYNONYMOUS_CODING CG13500	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12008938	2R_12008938_SNP [dm3] 2R_16121433_SNP [dm6]	G	A	3.028e^-4	0.826	SYNONYMOUS_CODING Jhe	TF binding site BDTNP1_TFBS_bcd
2R	7208536	2R_7208536_SNP [dm3] 2R_11321031_SNP [dm6]	C	A	3.032e^-4	0.826	SYNONYMOUS_CODING Or47b
3L	10875196	3L_10875196_SNP [dm3] 3L_10882096_SNP [dm6]	C	T	3.035e^-4	0.826	UTR_5_PRIME CG6409 UPSTREAM CG7949 & 1 other
X	426369	X_426369_SNP [dm3] X_532336_SNP [dm6]	G	A	3.038e^-4	0.826	INTRON Appl	TF binding site mE1_TFBS_sens
3L	2470333	3L_2470333_SNP [dm3] 3L_2470333_SNP [dm6]	G	C	3.038e^-4	0.826	INTRON CG45186	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	22243042	X_22243042_SNP [dm3] X_22841206_SNP [dm6]	C	T	3.039e^-4	0.826	INTRON fog & 1 other
2L	7249853	2L_7249853_SNP [dm3] 2L_7249853_SNP [dm6]	G	A	3.041e^-4	0.826	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2975050	3L_2975050_SNP [dm3] 3L_2975050_SNP [dm6]	T	A	3.046e^-4	0.826	DOWNSTREAM CR44530 INTERGENIC
3R	5939048	3R_5939048_SNP [dm3] 3R_10113326_SNP [dm6]	A	G	3.048e^-4	0.826	INTRON CG3940	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2L	16317713	2L_16317713_SNP [dm3] 2L_16317713_SNP [dm6]	C	T	3.051e^-4	0.826	INTRON cact	TF binding site BDTNP1_TFBS_twi
3R	15108638	3R_15108638_DEL [dm3] 3R_19282916_DEL [dm6]	TGGAATT	T	3.056e^-4	0.826	INTERGENIC
2R	8930324	2R_8930324_SNP [dm3] 2R_13042819_SNP [dm6]	T	C	3.065e^-4	0.826	INTERGENIC	enhancer mE1_CBP_Enhancers silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12192804	X_12192804_SNP [dm3] X_12298771_SNP [dm6]	C	T	3.072e^-4	0.826	INTRON Ten-a
3R	12726731	3R_12726731_SNP [dm3] 3R_16901009_SNP [dm6]	T	G	3.072e^-4	0.826	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	14865999	2L_14865999_SNP [dm3] 2L_14865999_SNP [dm6]	A	G	3.073e^-4	0.826	INTERGENIC
3L	1062890	3L_1062890_SNP [dm3] 3L_1062890_SNP [dm6]	T	G	3.073e^-4	0.826	INTRON bab1
2R	13774364	2R_13774364_SNP [dm3] 2R_17886859_SNP [dm6]	A	C	3.076e^-4	0.826	DOWNSTREAM PPO1 INTRON Elk	regulatory region REDfly_CRMs
2L	12241905	2L_12241905_INS [dm3] 2L_12241905_INS [dm6]	T	TGATA	3.078e^-4	0.826	INTRON aret	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	3142254	X_3142254_SNP [dm3] X_3248221_SNP [dm6]	A	G	3.079e^-4	0.826	DOWNSTREAM Pig1 INTRON dnc
3L	4476424	3L_4476424_SNP [dm3] 3L_4476424_SNP [dm6]	A	C	3.086e^-4	0.826	INTERGENIC
3R	17443066	3R_17443066_SNP [dm3] 3R_21617344_SNP [dm6]	T	A	3.088e^-4	0.826	INTRON InR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	17648405	X_17648405_SNP [dm3] X_17754372_SNP [dm6]	G	A	3.090e^-4	0.826	INTERGENIC
2L	15744795	2L_15744795_SNP [dm3] 2L_15744795_SNP [dm6]	G	A	3.091e^-4	0.826	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
2R	4478318	2R_4478318_SNP [dm3] 2R_8590813_SNP [dm6]	A	G	3.092e^-4	0.826	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8689093	3L_8689093_SNP [dm3] 3L_8695993_SNP [dm6]	A	C	3.094e^-4	0.826	INTERGENIC
3R	23134456	3R_23134456_SNP [dm3] 3R_27308734_SNP [dm6]	C	T	3.100e^-4	0.826	SYNONYMOUS_CODING CG3339
3L	2008574	3L_2008574_SNP [dm3] 3L_2008574_SNP [dm6]	T	C	3.105e^-4	0.826	DOWNSTREAM CR44535 INTERGENIC
3L	21935182	3L_21935182_SNP [dm3] 3L_21942082_SNP [dm6]	C	G	3.107e^-4	0.826	UPSTREAM CG14562 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Ubx
3L	4379842	3L_4379842_SNP [dm3] 3L_4379842_SNP [dm6]	G	A	3.110e^-4	0.826	UPSTREAM DopEcR INTRON DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1191953	3L_1191953_SNP [dm3] 3L_1191953_SNP [dm6]	C	T	3.111e^-4	0.826	SYNONYMOUS_CODING Trh
3L	5474777	3L_5474777_SNP [dm3] 3L_5481677_SNP [dm6]	A	C	3.122e^-4	0.826	SYNONYMOUS_CODING CG4835
2R	18327514	2R_18327514_SNP [dm3] 2R_22440009_SNP [dm6]	A	C	3.123e^-4	0.826	INTERGENIC
2R	19603556	2R_19603556_SNP [dm3] 2R_23716033_SNP [dm6]	C	A	3.131e^-4	0.826	INTRON Sesn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17599677	2R_17599677_SNP [dm3] 2R_21712172_SNP [dm6]	A	G	3.132e^-4	0.826	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3864430	3L_3864430_SNP [dm3] 3L_3864430_SNP [dm6]	G	A	3.143e^-4	0.826	UPSTREAM CR45379 INTERGENIC
X	2050333	X_2050333_SNP [dm3] X_2156300_SNP [dm6]	G	C	3.146e^-4	0.826	UPSTREAM wapl INTRON wapl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	3007657	3L_3007657_SNP [dm3] 3L_3007657_SNP [dm6]	A	T	3.151e^-4	0.826	INTRON FMRFaR
3R	27894718	3R_27894718_INS [dm3] 3R_32068996_INS [dm6]	T	TT	3.153e^-4	0.826	UPSTREAM Map205	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	17773467	3R_17773467_SNP [dm3] 3R_21947745_SNP [dm6]	G	A	3.153e^-4	0.826	INTERGENIC
3R	23243934	3R_23243934_SNP [dm3] 3R_27418212_SNP [dm6]	G	A	3.157e^-4	0.826	INTRON side
3R	25127538	3R_25127538_DEL [dm3] 3R_29301816_DEL [dm6]	TCTGTTTTCTGAATT...	T	3.160e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3889666	2L_3889666_SNP [dm3] 2L_3889666_SNP [dm6]	G	T	3.162e^-4	0.826	SYNONYMOUS_CODING capu UTR_5_PRIME capu UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_kn mE1_TFBS_ttk
2L	14866127	2L_14866127_SNP [dm3] 2L_14866127_SNP [dm6]	C	T	3.162e^-4	0.826	INTERGENIC
2R	3281096	2R_3281096_SNP [dm3] 2R_7393591_SNP [dm6]	T	C	3.164e^-4	0.826	UTR_3_PRIME CG1707 UPSTREAM Gr43a
X	5889151	X_5889151_SNP [dm3] X_5995118_SNP [dm6]	C	A	3.166e^-4	0.826	INTERGENIC
2R	9147190	2R_9147190_SNP [dm3] 2R_13259685_SNP [dm6]	G	A	3.175e^-4	0.826	UPSTREAM CG42319 INTERGENIC
X	12582760	X_12582760_SNP [dm3] X_12688727_SNP [dm6]	C	A	3.175e^-4	0.826	NON_SYNONYMOUS_CODING Smr	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2325185	3L_2325185_SNP [dm3] 3L_2325185_SNP [dm6]	T	A	3.179e^-4	0.826	INTRON MsR1
3L	3007824	3L_3007824_SNP [dm3] 3L_3007824_SNP [dm6]	T	A	3.181e^-4	0.826	INTRON FMRFaR
2R	12278454	2R_12278454_SNP [dm3] 2R_16390949_SNP [dm6]	G	C	3.192e^-4	0.826	INTRON Sema-2b
3R	21385713	3R_21385713_SNP [dm3] 3R_25559991_SNP [dm6]	A	C	3.195e^-4	0.826	INTRON msi
3L	5057113	3L_5057113_SNP [dm3] 3L_5057113_SNP [dm6]	G	A	3.195e^-4	0.826	INTRON Con
3L	9236199	3L_9236199_SNP [dm3] 3L_9243099_SNP [dm6]	G	A	3.195e^-4	0.826	INTERGENIC
2L	1822829	2L_1822829_SNP [dm3] 2L_1822829_SNP [dm6]	T	A	3.204e^-4	0.826	NON_SYNONYMOUS_CODING CG31933
2R	4478320	2R_4478320_SNP [dm3] 2R_8590815_SNP [dm6]	A	T	3.210e^-4	0.826	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12489074	2R_12489074_SNP [dm3] 2R_16601569_SNP [dm6]	T	G	3.211e^-4	0.826	INTRON CG8303
2L	7249849	2L_7249849_SNP [dm3] 2L_7249849_SNP [dm6]	G	A	3.216e^-4	0.826	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6334672	X_6334672_DEL [dm3] X_6440639_DEL [dm6]	TT	T	3.227e^-4	0.826	INTRON CG42340
3R	6967267	3R_6967267_SNP [dm3] 3R_11141545_SNP [dm6]	G	A	3.227e^-4	0.826	INTERGENIC
X	14791985	X_14791985_DEL [dm3] X_14897952_DEL [dm6]	ACTTCATTTGGACAA...	A	3.228e^-4	0.826	INTRON Flo2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13144428	3R_13144428_SNP [dm3] 3R_17318706_SNP [dm6]	C	A	3.232e^-4	0.826	INTERGENIC
2R	15815486	2R_15815486_SNP [dm3] 2R_19927981_SNP [dm6]	A	T	3.237e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3R	16330099	3R_16330099_SNP [dm3] 3R_20504377_SNP [dm6]	T	C	3.237e^-4	0.826	UPSTREAM MtnB & 1 other INTERGENIC
3L	4738937	3L_4738937_SNP [dm3] 3L_4738937_SNP [dm6]	T	C	3.240e^-4	0.826	INTRON RhoGEF64C
2R	11081343	2R_11081343_SNP [dm3] 2R_15193838_SNP [dm6]	T	A	3.242e^-4	0.826	UPSTREAM Sfp51E DOWNSTREAM CG43829 INTERGENIC
3L	9544901	3L_9544901_SNP [dm3] 3L_9551801_SNP [dm6]	G	T	3.248e^-4	0.826	INTRON CG42673
2L	14863444	2L_14863444_SNP [dm3] 2L_14863444_SNP [dm6]	C	T	3.262e^-4	0.826	INTERGENIC
3L	13341293	3L_13341293_SNP [dm3] 3L_13348193_SNP [dm6]	A	G	3.263e^-4	0.826	UPSTREAM CG17687 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12341650	2L_12341650_SNP [dm3] 2L_12341650_SNP [dm6]	G	T	3.265e^-4	0.826	INTERGENIC
2R	10480476	2R_10480476_SNP [dm3] 2R_14592971_SNP [dm6]	G	A	3.266e^-4	0.826	SYNONYMOUS_CODING CG12869	TF binding site mE1_TFBS_cad
2R	11464415	2R_11464415_SNP [dm3] 2R_15576910_SNP [dm6]	T	C	3.266e^-4	0.826	INTERGENIC
3L	8029662	3L_8029662_SNP [dm3] 3L_8036562_SNP [dm6]	A	G	3.271e^-4	0.826	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3R	23360847	3R_23360847_SNP [dm3] 3R_27535125_SNP [dm6]	G	T	3.272e^-4	0.826	DOWNSTREAM CR44289 INTERGENIC
3R	18115174	3R_18115174_SNP [dm3] 3R_22289452_SNP [dm6]	C	G	3.276e^-4	0.826	INTRON SKIP
3R	12726736	3R_12726736_SNP [dm3] 3R_16901014_SNP [dm6]	A	T	3.276e^-4	0.826	INTRON iab-8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	17794722	3L_17794722_SNP [dm3] 3L_17801622_SNP [dm6]	A	C	3.276e^-4	0.826	DOWNSTREAM CG5589 INTRON NUCB1
2L	7005925	2L_7005925_SNP [dm3] 2L_7005925_SNP [dm6]	C	T	3.278e^-4	0.826	INTRON uif	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	995664	3L_995664_INS [dm3] 3L_995664_INS [dm6]	T	TTTAATTA	3.284e^-4	0.826	UTR_3_PRIME CG12038 DOWNSTREAM trio
3R	12566314	3R_12566314_SNP [dm3] 3R_16740592_SNP [dm6]	A	G	3.288e^-4	0.826	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
2L	4896786	2L_4896786_SNP [dm3] 2L_4896786_SNP [dm6]	C	T	3.288e^-4	0.826	INTRON CG3036
2L	14866140	2L_14866140_DEL [dm3] 2L_14866140_DEL [dm6]	TA	T	3.288e^-4	0.826	INTERGENIC
2L	9558318	2L_9558318_SNP [dm3] 2L_9558318_SNP [dm6]	C	T	3.289e^-4	0.826	INTRON jp
2L	15493856	2L_15493856_SNP [dm3] 2L_15493856_SNP [dm6]	A	T	3.297e^-4	0.827	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	6393469	X_6393469_SNP [dm3] X_6499436_SNP [dm6]	T	C	3.318e^-4	0.83	INTRON CG42340
3R	21403291	3R_21403291_SNP [dm3] 3R_25577569_SNP [dm6]	G	A	3.320e^-4	0.83	INTRON msi
2L	12242198	2L_12242198_SNP [dm3] 2L_12242198_SNP [dm6]	C	T	3.322e^-4	0.83	INTRON aret	TF binding site mE1_TFBS_HSA
2R	4478369	2R_4478369_MNP [dm3] 2R_8590864_MNP [dm6]	TTT	CGG	3.330e^-4	0.83	INTRON CG14752	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19786024	2R_19786024_SNP [dm3] 2R_23898501_SNP [dm6]	T	C	3.335e^-4	0.83	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7250218	2L_7250218_SNP [dm3] 2L_7250218_SNP [dm6]	T	G	3.340e^-4	0.83	UPSTREAM Ndae1 DOWNSTREAM CG13786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	7799619	X_7799619_SNP [dm3] X_7905586_SNP [dm6]	T	C	3.351e^-4	0.83	UTR_3_PRIME dpr14 DOWNSTREAM dpr14
X	18734727	X_18734727_SNP [dm3] X_18840694_SNP [dm6]	A	G	3.351e^-4	0.83	SYNONYMOUS_CODING Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	16834961	X_16834961_SNP [dm3] X_16940928_SNP [dm6]	T	C	3.354e^-4	0.83	UPSTREAM wus DOWNSTREAM CG13001 INTERGENIC
3R	21403258	3R_21403258_SNP [dm3] 3R_25577536_SNP [dm6]	C	A	3.354e^-4	0.83	INTRON msi
X	19504976	X_19504976_SNP [dm3] X_19610943_SNP [dm6]	C	G	3.365e^-4	0.832	UTR_3_PRIME CG14207 UPSTREAM Tyler & 1 other
X	6656678	X_6656678_SNP [dm3] X_6762645_SNP [dm6]	G	A	3.373e^-4	0.832	SYNONYMOUS_CODING CG14438
3R	10224611	3R_10224611_SNP [dm3] 3R_14398889_SNP [dm6]	T	G	3.391e^-4	0.832	INTRON cv-c
X	5003761	X_5003761_SNP [dm3] X_5109728_SNP [dm6]	C	A	3.394e^-4	0.832	INTRON rg & 1 other
3R	23990088	3R_23990088_DEL [dm3] 3R_28164366_DEL [dm6]	CGCC	C	3.403e^-4	0.832	INTRON CG34354
3L	1674310	3L_1674310_DEL [dm3] 3L_1674310_DEL [dm6]	TT	T	3.416e^-4	0.832	UPSTREAM CG7991 INTERGENIC
3R	26982428	3R_26982428_SNP [dm3] 3R_31156706_SNP [dm6]	A	G	3.430e^-4	0.832	INTRON Gycbeta100B
3L	9951470	3L_9951470_SNP [dm3] 3L_9958370_SNP [dm6]	G	A	3.434e^-4	0.832	INTRON CG34356
2L	12205140	2L_12205140_SNP [dm3] 2L_12205140_SNP [dm6]	T	C	3.438e^-4	0.832	UPSTREAM aret INTRON aret
2L	14865075	2L_14865075_SNP [dm3] 2L_14865075_SNP [dm6]	T	C	3.444e^-4	0.832	INTERGENIC
2R	13381480	2R_13381480_SNP [dm3] 2R_17493975_SNP [dm6]	G	T	3.445e^-4	0.832	SYNONYMOUS_CODING CG30103 DOWNSTREAM NT5E-2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19587122	2R_19587122_SNP [dm3] 2R_23699599_SNP [dm6]	A	G	3.450e^-4	0.832	UTR_3_PRIME CG4091 DOWNSTREAM mRpL43	TF binding site mE1_TFBS_HSA
2L	11489507	2L_11489507_SNP [dm3] 2L_11489507_SNP [dm6]	A	G	3.457e^-4	0.832	INTERGENIC
2L	1821234	2L_1821234_SNP [dm3] 2L_1821234_SNP [dm6]	C	G	3.462e^-4	0.832	DOWNSTREAM CG31933 INTERGENIC
X	16824187	X_16824187_SNP [dm3] X_16930154_SNP [dm6]	C	T	3.468e^-4	0.832	INTRON CG4928
3R	19309941	3R_19309941_SNP [dm3] 3R_23484219_SNP [dm6]	T	C	3.475e^-4	0.832	SYNONYMOUS_CODING Ir94g DOWNSTREAM Ir94f
2L	7259938	2L_7259938_SNP [dm3] 2L_7259938_SNP [dm6]	C	T	3.475e^-4	0.832	INTRON Wnt4
X	5448852	X_5448852_SNP [dm3] X_5554819_SNP [dm6]	A	T	3.476e^-4	0.832	INTRON Vsx2	TF binding site mE1_TFBS_cnc
2R	13380839	2R_13380839_SNP [dm3] 2R_17493334_SNP [dm6]	C	T	3.477e^-4	0.832	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
X	16154780	X_16154780_SNP [dm3] X_16260747_SNP [dm6]	T	A	3.478e^-4	0.832	INTERGENIC
2R	17328420	2R_17328420_SNP [dm3] 2R_21440915_SNP [dm6]	A	G	3.484e^-4	0.832	INTRON Sdc
2L	15493861	2L_15493861_SNP [dm3] 2L_15493861_SNP [dm6]	A	G	3.488e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14821929	2R_14821929_SNP [dm3] 2R_18934424_SNP [dm6]	G	A	3.489e^-4	0.832	INTRON sano
3L	2196389	3L_2196389_SNP [dm3] 3L_2196389_SNP [dm6]	C	T	3.492e^-4	0.832	UPSTREAM CG8960 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15155931	2R_15155931_SNP [dm3] 2R_19268426_SNP [dm6]	T	A	3.493e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12314968	2L_12314968_SNP [dm3] 2L_12314968_SNP [dm6]	A	T	3.493e^-4	0.832	DOWNSTREAM CR45282 INTERGENIC
3L	13440198	3L_13440198_SNP [dm3] 3L_13447098_SNP [dm6]	G	T	3.494e^-4	0.832	DOWNSTREAM CG10732 INTRON CG10732	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2285264	3L_2285264_SNP [dm3] 3L_2285264_SNP [dm6]	G	A	3.501e^-4	0.832	INTRON MsR2
2L	2249190	2L_2249190_SNP [dm3] 2L_2249190_SNP [dm6]	C	A	3.510e^-4	0.832	INTERGENIC
2L	3882165	2L_3882165_SNP [dm3] 2L_3882165_SNP [dm6]	G	C	3.511e^-4	0.832	INTRON capu
3L	8070513	3L_8070513_SNP [dm3] 3L_8077413_SNP [dm6]	T	A	3.517e^-4	0.832	UTR_5_PRIME Ect4 INTRON Ect4	TF binding site mE1_TFBS_Trl
2L	7113595	2L_7113595_SNP [dm3] 2L_7113595_SNP [dm6]	A	G	3.528e^-4	0.832	INTRON Pvf3
2R	20767055	2R_20767055_SNP [dm3] 2R_24879532_SNP [dm6]	C	G	3.529e^-4	0.832	NON_SYNONYMOUS_CODING CG44247	TF binding site mE1_TFBS_chinmo
3L	10819374	3L_10819374_SNP [dm3] 3L_10826274_SNP [dm6]	C	A	3.533e^-4	0.832	DOWNSTREAM CR45246 INTERGENIC
2R	13838051	2R_13838051_SNP [dm3] 2R_17950546_SNP [dm6]	T	A	3.543e^-4	0.832	INTERGENIC
2R	9056641	2R_9056641_SNP [dm3] 2R_13169136_SNP [dm6]	C	G	3.548e^-4	0.832	SYNONYMOUS_CODING Spt-I EXON CR45142	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15744872	2L_15744872_SNP [dm3] 2L_15744872_SNP [dm6]	A	G	3.553e^-4	0.832	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
2R	18395134	2R_18395134_SNP [dm3] 2R_22507629_SNP [dm6]	G	A	3.571e^-4	0.832	INTRON px	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	10482470	2R_10482470_SNP [dm3] 2R_14594965_SNP [dm6]	C	T	3.574e^-4	0.832	SYNONYMOUS_CODING CG12869 DOWNSTREAM RpI1	TF binding site mE1_TFBS_cad
3L	12661327	3L_12661327_SNP [dm3] 3L_12668227_SNP [dm6]	G	A	3.574e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15471992	2L_15471992_SNP [dm3] 2L_15471992_SNP [dm6]	C	T	3.582e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22878471	3R_22878471_SNP [dm3] 3R_27052749_SNP [dm6]	C	T	3.596e^-4	0.832	INTRON RYa-R
2R	9843218	2R_9843218_INS [dm3] 2R_13955713_INS [dm6]	A	AT	3.600e^-4	0.832	UPSTREAM AGO1 DOWNSTREAM mRpL53 & 1 other INTRON AGO1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	13528399	X_13528399_DEL [dm3] X_13634366_DEL [dm6]	AA	A	3.605e^-4	0.832	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5934944	X_5934944_SNP [dm3] X_6040911_SNP [dm6]	C	T	3.609e^-4	0.832	INTRON CG5937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15493857	2L_15493857_SNP [dm3] 2L_15493857_SNP [dm6]	T	G	3.630e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17263951	3R_17263951_SNP [dm3] 3R_21438229_SNP [dm6]	G	A	3.640e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_cnc
2R	9078693	2R_9078693_SNP [dm3] 2R_13191188_SNP [dm6]	T	G	3.650e^-4	0.832	INTRON Kdm4B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	12532222	X_12532222_SNP [dm3] X_12638189_SNP [dm6]	G	T	3.656e^-4	0.832	INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2R	15035166	2R_15035166_SNP [dm3] 2R_19147661_SNP [dm6]	T	G	3.656e^-4	0.832	INTRON ena	TF binding site mE1_TFBS_HSA
2R	20748879	2R_20748879_SNP [dm3] 2R_24861356_SNP [dm6]	C	T	3.664e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	21457268	3R_21457268_SNP [dm3] 3R_25631546_SNP [dm6]	A	T	3.664e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2208703	3L_2208703_SNP [dm3] 3L_2208703_SNP [dm6]	A	C	3.665e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
2L	10454546	2L_10454546_SNP [dm3] 2L_10454546_SNP [dm6]	A	G	3.671e^-4	0.832	SYNONYMOUS_CODING CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16243995	2R_16243995_SNP [dm3] 2R_20356490_SNP [dm6]	A	G	3.686e^-4	0.832	INTERGENIC
2R	16418057	2R_16418057_SNP [dm3] 2R_20530552_SNP [dm6]	T	A	3.693e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19692322	2R_19692322_SNP [dm3] 2R_23804799_SNP [dm6]	C	T	3.702e^-4	0.832	UPSTREAM CG5539 INTRON CG13561	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5708990	2L_5708990_SNP [dm3] 2L_5708990_SNP [dm6]	G	T	3.712e^-4	0.832	UPSTREAM CG7236 INTRON CG7236
2L	12606363	2L_12606363_SNP [dm3] 2L_12606363_SNP [dm6]	C	A	3.723e^-4	0.832	INTRON nub	TF binding site BDTNP1_TFBS_da
3L	2014834	3L_2014834_SNP [dm3] 3L_2014834_SNP [dm6]	G	A	3.725e^-4	0.832	INTERGENIC
2R	6064191	2R_6064191_SNP [dm3] 2R_10176686_SNP [dm6]	T	C	3.732e^-4	0.832	INTRON KCNQ
2R	20757841	2R_20757841_SNP [dm3] 2R_24870318_SNP [dm6]	A	G	3.733e^-4	0.832	NON_SYNONYMOUS_CODING Atf-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	11494332	3R_11494332_SNP [dm3] 3R_15668610_SNP [dm6]	T	C	3.738e^-4	0.832	INTRON pxb EXON CR43849	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	18212169	X_18212169_SNP [dm3] X_18318136_SNP [dm6]	G	A	3.740e^-4	0.832	INTRON CG6023
2R	5474427	2R_5474427_SNP [dm3] 2R_9586922_SNP [dm6]	G	A	3.741e^-4	0.832	UPSTREAM RpL31 & 1 other DOWNSTREAM Updo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9147036	2R_9147036_SNP [dm3] 2R_13259531_SNP [dm6]	A	T	3.746e^-4	0.832	UPSTREAM CG42319 INTERGENIC	transposable element FlyBase
3L	3553268	3L_3553268_SNP [dm3] 3L_3553268_SNP [dm6]	T	A	3.750e^-4	0.832	INTRON Eip63E
X	12814846	X_12814846_SNP [dm3] X_12920813_SNP [dm6]	A	T	3.753e^-4	0.832	INTRON fne
3L	4924712	3L_4924712_SNP [dm3] 3L_4924712_SNP [dm6]	C	A	3.754e^-4	0.832	INTERGENIC
2L	1563753	2L_1563753_SNP [dm3] 2L_1563753_SNP [dm6]	G	A	3.770e^-4	0.832	INTRON haf	TF binding site mE1_TFBS_inv
X	15426930	X_15426930_SNP [dm3] X_15532897_SNP [dm6]	C	G	3.770e^-4	0.832	INTRON Ac13E
2R	5293223	2R_5293223_SNP [dm3] 2R_9405718_SNP [dm6]	G	T	3.788e^-4	0.832	INTRON wun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4046425	2L_4046425_SNP [dm3] 2L_4046425_SNP [dm6]	T	A	3.799e^-4	0.832	INTRON ed
3L	4925116	3L_4925116_SNP [dm3] 3L_4925116_SNP [dm6]	C	T	3.803e^-4	0.832	INTERGENIC
2R	11732104	2R_11732104_SNP [dm3] 2R_15844599_SNP [dm6]	G	A	3.803e^-4	0.832	SYNONYMOUS_CODING CG8249 INTRON tun	TF binding site mE1_TFBS_sens
X	13684547	X_13684547_SNP [dm3] X_13790514_SNP [dm6]	G	C	3.816e^-4	0.832	NON_SYNONYMOUS_CODING CG10993 INTRON inaE
X	4271230	X_4271230_SNP [dm3] X_4377197_SNP [dm6]	C	G	3.828e^-4	0.832	DOWNSTREAM CR45484 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2143432	3L_2143432_SNP [dm3] 3L_2143432_SNP [dm6]	C	T	3.829e^-4	0.832	INTRON zormin
2R	13093069	2R_13093069_SNP [dm3] 2R_17205564_SNP [dm6]	A	T	3.831e^-4	0.832	NON_SYNONYMOUS_CODING CG43237
2L	17493010	2L_17493010_SNP [dm3] 2L_17493010_SNP [dm6]	T	A	3.831e^-4	0.832	UPSTREAM qua INTRON qua
3R	22962340	3R_22962340_SNP [dm3] 3R_27136618_SNP [dm6]	T	A	3.847e^-4	0.832	INTRON CG6051
2L	11634648	2L_11634648_DEL [dm3] 2L_11634648_DEL [dm6]	TCCGTCCAACTTCGT...	T	3.850e^-4	0.832	INTERGENIC	TF binding site mE1_TFBS_inv
2L	9464474	2L_9464474_SNP [dm3] 2L_9464474_SNP [dm6]	A	G	3.860e^-4	0.832	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1
2L	20867394	2L_20867394_SNP [dm3] 2L_20867394_SNP [dm6]	G	A	3.864e^-4	0.832	UTR_3_PRIME CG9338 UPSTREAM CG31675 DOWNSTREAM CG9338	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	10442813	2L_10442813_SNP [dm3] 2L_10442813_SNP [dm6]	T	A	3.868e^-4	0.832	UPSTREAM CR45375 INTRON loh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	10511986	2R_10511986_SNP [dm3] 2R_14624481_SNP [dm6]	C	T	3.877e^-4	0.832	DOWNSTREAM snoRNA:Me28S-G2703a & 3 others EXON Uhg5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2088883	3L_2088883_SNP [dm3] 3L_2088883_SNP [dm6]	G	A	3.878e^-4	0.832	UTR_3_PRIME sls INTRON sls & 1 other EXON CR42860	TF binding site mE1_TFBS_HSA
3L	4610687	3L_4610687_SNP [dm3] 3L_4610687_SNP [dm6]	T	C	3.879e^-4	0.832	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25252360	3R_25252360_SNP [dm3] 3R_29426638_SNP [dm6]	T	G	3.884e^-4	0.832	INTRON Ptp99A
2L	7663399	2L_7663399_SNP [dm3] 2L_7663399_SNP [dm6]	A	G	3.885e^-4	0.832	INTRON Slob
2L	7805150	2L_7805150_SNP [dm3] 2L_7805150_SNP [dm6]	T	C	3.890e^-4	0.832	NON_SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	21292727	3L_21292727_SNP [dm3] 3L_21299627_SNP [dm6]	C	G	3.891e^-4	0.832	UPSTREAM Cpr78Cc DOWNSTREAM CG43702 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna
2R	12873991	2R_12873991_SNP [dm3] 2R_16986486_SNP [dm6]	A	G	3.907e^-4	0.832	INTRON Cbp53E
2L	8052379	2L_8052379_SNP [dm3] 2L_8052379_SNP [dm6]	G	A	3.914e^-4	0.832	SYNONYMOUS_CODING CG7466
2L	11092161	2L_11092161_SNP [dm3] 2L_11092161_SNP [dm6]	C	T	3.919e^-4	0.832	INTRON CG4705
2L	7250696	2L_7250696_SNP [dm3] 2L_7250696_SNP [dm6]	A	G	3.926e^-4	0.832	UTR_3_PRIME CG13786
2L	14328422	2L_14328422_SNP [dm3] 2L_14328422_SNP [dm6]	T	C	3.929e^-4	0.832	UPSTREAM ms_2_34Fe DOWNSTREAM wb INTERGENIC
3L	7799372	3L_7799372_SNP [dm3] 3L_7806272_SNP [dm6]	T	G	3.933e^-4	0.832	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
X	440971	X_440971_DEL [dm3] X_546938_DEL [dm6]	GTTTAGCTGA	G	3.933e^-4	0.832	INTRON Appl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12748073	3R_12748073_SNP [dm3] 3R_16922351_SNP [dm6]	G	A	3.940e^-4	0.832	INTRON iab-8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8366488	2R_8366488_SNP [dm3] 2R_12478983_SNP [dm6]	C	A	3.943e^-4	0.832	INTRON Dh44-R2
2R	16902863	2R_16902863_SNP [dm3] 2R_21015358_SNP [dm6]	C	G	3.952e^-4	0.832	SYNONYMOUS_CODING CG9346 DOWNSTREAM CG3295
2L	1091326	2L_1091326_SNP [dm3] 2L_1091326_SNP [dm6]	A	G	3.962e^-4	0.832	INTRON CG4629
3R	20709279	3R_20709279_SNP [dm3] 3R_24883557_SNP [dm6]	A	C	3.968e^-4	0.832	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1662995	2R_1662995_SNP [dm3] 2R_5775490_SNP [dm6]	T	A	3.969e^-4	0.832	INTRON ZnT41F
2L	4266417	2L_4266417_SNP [dm3] 2L_4266417_SNP [dm6]	G	T	3.970e^-4	0.832	INTERGENIC
2R	20053813	2R_20053813_SNP [dm3] 2R_24166290_SNP [dm6]	T	G	3.971e^-4	0.832	UPSTREAM CG3328 INTRON CG3328
3R	16692765	3R_16692765_SNP [dm3] 3R_20867043_SNP [dm6]	C	T	3.975e^-4	0.832	UPSTREAM CG3822 INTERGENIC
X	8422811	X_8422811_SNP [dm3] X_8528778_SNP [dm6]	T	C	3.978e^-4	0.832	SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8731799	2L_8731799_SNP [dm3] 2L_8731799_SNP [dm6]	T	C	3.981e^-4	0.832	INTRON raw
2R	17326825	2R_17326825_SNP [dm3] 2R_21439320_SNP [dm6]	A	G	3.982e^-4	0.832	INTRON Sdc
2L	11092228	2L_11092228_SNP [dm3] 2L_11092228_SNP [dm6]	A	T	3.994e^-4	0.832	SYNONYMOUS_CODING CG4705
2L	11857399	2L_11857399_SNP [dm3] 2L_11857399_SNP [dm6]	T	C	3.994e^-4	0.832	INTRON Pde1c
2L	9460410	2L_9460410_SNP [dm3] 2L_9460410_SNP [dm6]	T	C	3.997e^-4	0.832	INTRON numb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	2802216	2R_2802216_SNP [dm3] 2R_6914711_SNP [dm6]	C	T	4.002e^-4	0.832	SYNONYMOUS_CODING CG30158
3L	18150792	3L_18150792_SNP [dm3] 3L_18157692_SNP [dm6]	A	C	4.003e^-4	0.832	INTRON CG13699
X	13528359	X_13528359_SNP [dm3] X_13634326_SNP [dm6]	A	G	4.007e^-4	0.832	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2479024	X_2479024_SNP [dm3] X_2584991_SNP [dm6]	T	A	4.007e^-4	0.832	SPLICE_SITE_REGION CG13760 UPSTREAM wds INTRON CG13760	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2842937	2L_2842937_SNP [dm3] 2L_2842937_SNP [dm6]	A	G	4.012e^-4	0.832	SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2L	2017331	2L_2017331_SNP [dm3] 2L_2017331_SNP [dm6]	C	T	4.016e^-4	0.832	UPSTREAM CG4238 INTRON CG4238
2R	19224676	2R_19224676_SNP [dm3] 2R_23337153_SNP [dm6]	G	T	4.020e^-4	0.832	INTERGENIC
3R	17636337	3R_17636337_SNP [dm3] 3R_21810615_SNP [dm6]	T	A	4.021e^-4	0.832	INTRON CASK
2L	19302647	2L_19302647_SNP [dm3] 2L_19302647_SNP [dm6]	C	T	4.025e^-4	0.832	INTERGENIC
2R	1767587	2R_1767587_SNP [dm3] 2R_5880082_SNP [dm6]	C	T	4.028e^-4	0.832	UTR_5_PRIME CG44438
2L	6311533	2L_6311533_SNP [dm3] 2L_6311533_SNP [dm6]	A	G	4.030e^-4	0.832	INTRON Ddr
2R	19717831	2R_19717831_SNP [dm3] 2R_23830308_SNP [dm6]	A	G	4.034e^-4	0.832	INTRON CG5549
3L	16401690	3L_16401690_SNP [dm3] 3L_16408590_SNP [dm6]	C	A	4.038e^-4	0.832	UPSTREAM fax INTRON fax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	14686048	X_14686048_SNP [dm3] X_14792015_SNP [dm6]	A	G	4.040e^-4	0.832	SYNONYMOUS_CODING rut INTRON rut	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8440751	2R_8440751_SNP [dm3] 2R_12553246_SNP [dm6]	C	T	4.042e^-4	0.832	INTRON fra
3R	10512019	3R_10512019_SNP [dm3] 3R_14686297_SNP [dm6]	C	T	4.055e^-4	0.832	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14366514	2R_14366514_SNP [dm3] 2R_18479009_SNP [dm6]	A	G	4.062e^-4	0.832	INTRON CG30116
2L	11489423	2L_11489423_SNP [dm3] 2L_11489423_SNP [dm6]	A	C	4.068e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26454197	3R_26454197_SNP [dm3] 3R_30628475_SNP [dm6]	T	C	4.073e^-4	0.832	SYNONYMOUS_CODING CG2267
X	18928673	X_18928673_SNP [dm3] X_19034640_SNP [dm6]	G	A	4.074e^-4	0.832	INTERGENIC
3L	2008226	3L_2008226_SNP [dm3] 3L_2008226_SNP [dm6]	G	T	4.080e^-4	0.832	DOWNSTREAM CR44535 INTERGENIC
2L	2409829	2L_2409829_SNP [dm3] 2L_2409829_SNP [dm6]	T	A	4.083e^-4	0.832	UTR_3_PRIME VGlut DOWNSTREAM CG18641
2L	11489513	2L_11489513_SNP [dm3] 2L_11489513_SNP [dm6]	A	T	4.083e^-4	0.832	INTERGENIC
3L	10718334	3L_10718334_SNP [dm3] 3L_10725234_SNP [dm6]	C	A	4.085e^-4	0.832	INTERGENIC
3R	17773486	3R_17773486_SNP [dm3] 3R_21947764_SNP [dm6]	A	C	4.090e^-4	0.832	INTERGENIC
3R	11187174	3R_11187174_SNP [dm3] 3R_15361452_SNP [dm6]	C	A	4.100e^-4	0.832	UPSTREAM Trax INTRON ldlCp
2L	9649060	2L_9649060_SNP [dm3] 2L_9649060_SNP [dm6]	C	T	4.105e^-4	0.832	SYNONYMOUS_CODING Apoltp
3R	9704646	3R_9704646_SNP [dm3] 3R_13878924_SNP [dm6]	G	A	4.108e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19071105	2L_19071105_SNP [dm3] 2L_19071105_SNP [dm6]	G	A	4.108e^-4	0.832	DOWNSTREAM CG17572 INTERGENIC
X	17168239	X_17168239_SNP [dm3] X_17274206_SNP [dm6]	T	G	4.109e^-4	0.832	INTRON f
X	16270023	X_16270023_SNP [dm3] X_16375990_SNP [dm6]	T	C	4.112e^-4	0.832	SYNONYMOUS_CODING Fur2	TF binding site mE1_TFBS_sens
3R	22892726	3R_22892726_SNP [dm3] 3R_27067004_SNP [dm6]	G	A	4.113e^-4	0.832	INTRON spz	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16465142	2L_16465142_SNP [dm3] 2L_16465142_SNP [dm6]	G	A	4.118e^-4	0.832	INTERGENIC	regulatory region REDfly_CRMs
3L	24137856	3L_24137856_SNP [dm3] 3L_24144756_SNP [dm6]	T	A	4.124e^-4	0.832	INTRON Snap25
2L	9175945	2L_9175945_SNP [dm3] 2L_9175945_SNP [dm6]	A	C	4.128e^-4	0.832	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	11415358	2R_11415358_INS [dm3] 2R_15527853_INS [dm6]	A	AA	4.133e^-4	0.832	INTRON Khc-73	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24701664	3R_24701664_SNP [dm3] 3R_28875942_SNP [dm6]	G	C	4.135e^-4	0.832	SYNONYMOUS_CODING CG14528 DOWNSTREAM CG14529 INTRON CG33203	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9464758	2L_9464758_SNP [dm3] 2L_9464758_SNP [dm6]	T	C	4.135e^-4	0.832	DOWNSTREAM numb INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	4675511	X_4675511_SNP [dm3] X_4781478_SNP [dm6]	G	T	4.138e^-4	0.832	DOWNSTREAM CG15471 INTERGENIC
3L	5354400	3L_5354400_SNP [dm3] 3L_5361300_SNP [dm6]	A	C	4.141e^-4	0.832	INTRON CG4769	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	2901399	2L_2901399_SNP [dm3] 2L_2901399_SNP [dm6]	G	C	4.144e^-4	0.832	INTRON lilli
3L	18150762	3L_18150762_SNP [dm3] 3L_18157662_SNP [dm6]	C	A	4.146e^-4	0.832	INTRON CG13699
3L	4706223	3L_4706223_SNP [dm3] 3L_4706223_SNP [dm6]	G	A	4.159e^-4	0.832	INTRON RhoGEF64C
2L	14862906	2L_14862906_SNP [dm3] 2L_14862906_SNP [dm6]	A	T	4.163e^-4	0.832	INTERGENIC
X	8422788	X_8422788_SNP [dm3] X_8528755_SNP [dm6]	T	C	4.166e^-4	0.832	NON_SYNONYMOUS_CODING PIP82 INTRON Nrg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10686669	3R_10686669_SNP [dm3] 3R_14860947_SNP [dm6]	G	T	4.175e^-4	0.832	INTRON btsz
2R	8930943	2R_8930943_SNP [dm3] 2R_13043438_SNP [dm6]	C	A	4.182e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_h
2R	11588037	2R_11588037_SNP [dm3] 2R_15700532_SNP [dm6]	A	C	4.188e^-4	0.832	START_GAINED CG42662 UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13687918	2R_13687918_INS [dm3] 2R_17800413_INS [dm6]	C	CGCACAC	4.191e^-4	0.832	UTR_3_PRIME Dhit UPSTREAM grh DOWNSTREAM CR45270	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	10183473	2R_10183473_DEL [dm3] 2R_14295968_DEL [dm6]	AAACAA	A	4.194e^-4	0.832	DOWNSTREAM Ih INTRON Ih
2R	19597639	2R_19597639_SNP [dm3] 2R_23710116_SNP [dm6]	A	G	4.197e^-4	0.832	UPSTREAM l_2_not DOWNSTREAM CR45326 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	11588304	2R_11588304_SNP [dm3] 2R_15700799_SNP [dm6]	G	A	4.197e^-4	0.832	START_GAINED CG42662 UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2625616	2L_2625616_SNP [dm3] 2L_2625616_SNP [dm6]	G	C	4.205e^-4	0.832	EXON CR45705
2R	16107065	2R_16107065_SNP [dm3] 2R_20219560_SNP [dm6]	G	A	4.207e^-4	0.832	INTERGENIC
3R	12566331	3R_12566331_SNP [dm3] 3R_16740609_SNP [dm6]	C	T	4.212e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad
3R	25514631	3R_25514631_SNP [dm3] 3R_29688909_SNP [dm6]	G	A	4.213e^-4	0.832	INTRON Obp99c
2L	1563742	2L_1563742_SNP [dm3] 2L_1563742_SNP [dm6]	T	C	4.216e^-4	0.832	INTRON haf	TF binding site mE1_TFBS_inv
2R	10634070	2R_10634070_SNP [dm3] 2R_14746565_SNP [dm6]	C	A	4.229e^-4	0.832	UTR_3_PRIME Dro UPSTREAM AttA DOWNSTREAM Dro
2R	8365810	2R_8365810_SNP [dm3] 2R_12478305_SNP [dm6]	A	G	4.232e^-4	0.832	INTRON Dh44-R2
3R	11998893	3R_11998893_SNP [dm3] 3R_16173171_SNP [dm6]	A	G	4.232e^-4	0.832	INTRON CG8925	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15156086	2R_15156086_SNP [dm3] 2R_19268581_SNP [dm6]	A	G	4.233e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8367019	2R_8367019_SNP [dm3] 2R_12479514_SNP [dm6]	G	T	4.238e^-4	0.832	INTRON Dh44-R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2035760	X_2035760_SNP [dm3] X_2141727_SNP [dm6]	C	T	4.245e^-4	0.832	UPSTREAM CG3835 INTRON CG3835	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2R	19695281	2R_19695281_SNP [dm3] 2R_23807758_SNP [dm6]	G	A	4.253e^-4	0.832	SYNONYMOUS_CODING Ssrp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17599658	2R_17599658_SNP [dm3] 2R_21712153_SNP [dm6]	C	T	4.253e^-4	0.832	UPSTREAM CG30403 INTRON HmgD	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3891257	2L_3891257_SNP [dm3] 2L_3891257_SNP [dm6]	G	A	4.261e^-4	0.832	INTRON capu
3L	21289537	3L_21289537_SNP [dm3] 3L_21296437_SNP [dm6]	A	C	4.268e^-4	0.832	UTR_3_PRIME Cpr78Cb DOWNSTREAM Edg78E	TF binding site mE1_TFBS_sens
X	7318960	X_7318960_SNP [dm3] X_7424927_SNP [dm6]	G	A	4.270e^-4	0.832	UPSTREAM CG15036 DOWNSTREAM CG32726 INTERGENIC
X	17168271	X_17168271_SNP [dm3] X_17274238_SNP [dm6]	G	C	4.289e^-4	0.832	INTRON f
X	22164099	X_22164099_SNP [dm3] X_22762263_SNP [dm6]	G	A	4.292e^-4	0.832	INTRON CR44997
2R	9146968	2R_9146968_SNP [dm3] 2R_13259463_SNP [dm6]	T	C	4.292e^-4	0.832	UPSTREAM CG42319 DOWNSTREAM CG10799 INTERGENIC
2R	16479579	2R_16479579_SNP [dm3] 2R_20592074_SNP [dm6]	G	A	4.293e^-4	0.832	INTRON bl
3L	21404771	3L_21404771_SNP [dm3] 3L_21411671_SNP [dm6]	C	T	4.295e^-4	0.832	INTRON rgn
2R	10174793	2R_10174793_SNP [dm3] 2R_14287288_SNP [dm6]	C	A	4.302e^-4	0.832	NON_SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	3532484	X_3532484_SNP [dm3] X_3638451_SNP [dm6]	G	A	4.302e^-4	0.832	INTRON AstA-R1
2R	14762345	2R_14762345_SNP [dm3] 2R_18874840_SNP [dm6]	C	A	4.305e^-4	0.832	INTERGENIC
2L	3164276	2L_3164276_INS [dm3] 2L_3164276_INS [dm6]	T	TATTT	4.306e^-4	0.832	DOWNSTREAM CR31953 INTRON Hydr2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	20973775	3R_20973775_SNP [dm3] 3R_25148053_SNP [dm6]	A	T	4.308e^-4	0.832	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8110970	3L_8110970_SNP [dm3] 3L_8117870_SNP [dm6]	C	T	4.309e^-4	0.832	SYNONYMOUS_CODING msk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10834458	3L_10834458_SNP [dm3] 3L_10841358_SNP [dm6]	G	A	4.311e^-4	0.832	INTERGENIC
3L	1204917	3L_1204917_SNP [dm3] 3L_1204917_SNP [dm6]	G	A	4.314e^-4	0.832	UPSTREAM CG9119 INTRON mwh	TF binding site mE1_TFBS_cad
2L	19342037	2L_19342037_SNP [dm3] 2L_19342037_SNP [dm6]	C	G	4.319e^-4	0.832	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6583733	2L_6583733_SNP [dm3] 2L_6583733_SNP [dm6]	A	G	4.322e^-4	0.832	INTRON CG11319
2R	20771452	2R_20771452_SNP [dm3] 2R_24883929_SNP [dm6]	A	G	4.326e^-4	0.832	UTR_3_PRIME NKAIN INTRON NKAIN
2L	14863160	2L_14863160_SNP [dm3] 2L_14863160_SNP [dm6]	G	A	4.331e^-4	0.832	INTERGENIC
3L	9959242	3L_9959242_DEL [dm3] 3L_9966142_DEL [dm6]	GA	G	4.342e^-4	0.832	UTR_3_PRIME CG34356 DOWNSTREAM CG6685 & 1 other	TF binding site mE1_TFBS_kn
3R	10685984	3R_10685984_SNP [dm3] 3R_14860262_SNP [dm6]	C	T	4.349e^-4	0.832	INTRON btsz
2R	9147240	2R_9147240_SNP [dm3] 2R_13259735_SNP [dm6]	G	T	4.356e^-4	0.832	UPSTREAM CG42319 INTERGENIC
2R	20750471	2R_20750471_DEL [dm3] 2R_24862948_DEL [dm6]	TCGTAGT	T	4.370e^-4	0.832	INTERGENIC
3L	11508029	3L_11508029_SNP [dm3] 3L_11514929_SNP [dm6]	C	A	4.371e^-4	0.832	SYNONYMOUS_CODING CG7512
3R	17841204	3R_17841204_SNP [dm3] 3R_22015482_SNP [dm6]	A	G	4.375e^-4	0.832	SPLICE_SITE_REGION CG6332 DOWNSTREAM Eip93F & 1 other INTRON CG6332	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
X	13528388	X_13528388_SNP [dm3] X_13634355_SNP [dm6]	A	T	4.389e^-4	0.832	INTRON NFAT	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14867764	2L_14867764_SNP [dm3] 2L_14867764_SNP [dm6]	A	G	4.396e^-4	0.832	INTERGENIC
2L	3441828	2L_3441828_SNP [dm3] 2L_3441828_SNP [dm6]	A	G	4.406e^-4	0.832	INTERGENIC
2R	6680784	2R_6680784_SNP [dm3] 2R_10793279_SNP [dm6]	T	A	4.406e^-4	0.832	DOWNSTREAM mthl13 INTRON CG33144
2L	2625703	2L_2625703_SNP [dm3] 2L_2625703_SNP [dm6]	G	C	4.408e^-4	0.832	EXON CR45705
3R	17036486	3R_17036486_SNP [dm3] 3R_21210764_SNP [dm6]	C	T	4.411e^-4	0.832	INTRON SNF4Agamma
2L	15045504	2L_15045504_SNP [dm3] 2L_15045504_SNP [dm6]	C	T	4.412e^-4	0.832	SYNONYMOUS_CODING ck
2R	13798050	2R_13798050_SNP [dm3] 2R_17910545_SNP [dm6]	G	A	4.413e^-4	0.832	INTRON Elk
3R	26359169	3R_26359169_SNP [dm3] 3R_30533447_SNP [dm6]	C	T	4.413e^-4	0.832	SYNONYMOUS_CODING tmod
X	16343280	X_16343280_SNP [dm3] X_16449247_SNP [dm6]	A	C	4.424e^-4	0.832	UTR_5_PRIME Rbp2 UPSTREAM CG34015 INTRON Rbp2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6162696	2R_6162696_SNP [dm3] 2R_10275191_SNP [dm6]	T	C	4.431e^-4	0.832	UPSTREAM CAP INTRON CAP
3R	25507532	3R_25507532_SNP [dm3] 3R_29681810_SNP [dm6]	G	C	4.434e^-4	0.832	UPSTREAM Gycalpha99B INTRON CG7582	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	21276512	3L_21276512_SNP [dm3] 3L_21283412_SNP [dm6]	T	C	4.434e^-4	0.832	NON_SYNONYMOUS_CODING CG12974	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22788216	3R_22788216_SNP [dm3] 3R_26962494_SNP [dm6]	T	A	4.436e^-4	0.832	INTRON Tsp97E
2R	19792628	2R_19792628_SNP [dm3] 2R_23905105_SNP [dm6]	G	A	4.440e^-4	0.832	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
X	22163482	X_22163482_SNP [dm3] X_22761646_SNP [dm6]	C	T	4.441e^-4	0.832	INTRON CR44997
2R	21059656	2R_21059656_SNP [dm3] 2R_25172133_SNP [dm6]	C	G	4.444e^-4	0.832	DOWNSTREAM Sfp60F INTERGENIC	TF binding site mE1_TFBS_Kr
3L	8861095	3L_8861095_SNP [dm3] 3L_8867995_SNP [dm6]	T	A	4.457e^-4	0.832	INTRON dally
3L	8491255	3L_8491255_SNP [dm3] 3L_8498155_SNP [dm6]	A	T	4.458e^-4	0.832	INTRON CG43163	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19692312	2R_19692312_SNP [dm3] 2R_23804789_SNP [dm6]	T	C	4.458e^-4	0.832	UPSTREAM CG5539 INTRON CG13561	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3749249	3L_3749249_SNP [dm3] 3L_3749249_SNP [dm6]	G	T	4.460e^-4	0.832	INTRON CG32264
2R	11588172	2R_11588172_SNP [dm3] 2R_15700667_SNP [dm6]	C	T	4.460e^-4	0.832	UTR_5_PRIME CG42662 UTR_3_PRIME CG30080 UPSTREAM CG42662 INTRON CG30080 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5384213	3R_5384213_SNP [dm3] 3R_9558491_SNP [dm6]	C	G	4.465e^-4	0.832	SYNONYMOUS_CODING AP-1mu DOWNSTREAM CG8199	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	2209161	3L_2209161_SNP [dm3] 3L_2209161_SNP [dm6]	A	G	4.467e^-4	0.832	INTERGENIC
3R	21849756	3R_21849756_SNP [dm3] 3R_26024034_SNP [dm6]	T	C	4.468e^-4	0.832	UTR_3_PRIME E_spl_m4-BFM DOWNSTREAM E_spl_m3-HLH	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6583788	2L_6583788_SNP [dm3] 2L_6583788_SNP [dm6]	G	A	4.480e^-4	0.832	INTRON CG11319
3L	10339989	3L_10339989_SNP [dm3] 3L_10346889_SNP [dm6]	A	G	4.484e^-4	0.832	INTERGENIC
2L	15392601	2L_15392601_SNP [dm3] 2L_15392601_SNP [dm6]	T	C	4.486e^-4	0.832	INTERGENIC
2R	8418279	2R_8418279_SNP [dm3] 2R_12530774_SNP [dm6]	C	G	4.488e^-4	0.832	INTRON fra	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	5161915	3L_5161915_SNP [dm3] 3L_5168815_SNP [dm6]	A	T	4.489e^-4	0.832	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	22234330	X_22234330_SNP [dm3] X_22832494_SNP [dm6]	A	G	4.490e^-4	0.832	DOWNSTREAM mir-2491 INTRON fog & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13978268	2R_13978268_SNP [dm3] 2R_18090763_SNP [dm6]	G	A	4.490e^-4	0.832	INTRON CG34386
X	5862291	X_5862291_SNP [dm3] X_5968258_SNP [dm6]	C	T	4.491e^-4	0.832	INTRON Grip
3R	15348229	3R_15348229_INS [dm3] 3R_19522507_INS [dm6]	A	AA	4.491e^-4	0.832	INTRON Dys
3R	12713230	3R_12713230_SNP [dm3] 3R_16887508_SNP [dm6]	G	A	4.502e^-4	0.832	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	21293167	3L_21293167_SNP [dm3] 3L_21300067_SNP [dm6]	T	A	4.513e^-4	0.832	UPSTREAM Cpr78Cc INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19075061	2L_19075061_SNP [dm3] 2L_19075061_SNP [dm6]	C	T	4.514e^-4	0.832	UPSTREAM CG17572 EXON CR33315	TF binding site BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

pc_Surv_MeHg_5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results