DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.299e^-9)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.0100874
In_3R_Mo	0.0009098

Kruskal-Wallis test

Covariate	χ²	p-value
In_2L_t	4.7055	0.0951
In_2R_NS	12.4882	0.0019
In_3R_Mo	7.2414	0.0268

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1586 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8023934	3L_8023934_SNP [dm3] 3L_8030834_SNP [dm6]	T	G	4.715e^-7	0.884	INTRON nmo
2R	13860330	2R_13860330_SNP [dm3] 2R_17972825_SNP [dm6]	T	C	1.576e^-6	1	INTERGENIC
3R	26676395	3R_26676395_DEL [dm3] 3R_30850673_DEL [dm6]	TT	G	2.982e^-6	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	672765	2L_672765_SNP [dm3] 2L_672765_SNP [dm6]	A	T	4.670e^-6	1	INTRON ds	TF binding site mE1_TFBS_HSA
2R	13860324	2R_13860324_SNP [dm3] 2R_17972819_SNP [dm6]	G	C	4.973e^-6	1	INTERGENIC
2L	20398927	2L_20398927_SNP [dm3] 2L_20398927_SNP [dm6]	T	A	5.916e^-6	1	INTRON CG10947
3L	4034312	3L_4034312_SNP [dm3] 3L_4034312_SNP [dm6]	G	T	8.235e^-6	1	NON_SYNONYMOUS_CODING Gr64e UTR_3_PRIME Gr64d DOWNSTREAM Gr64d EXON CR45042
3L	15186426	3L_15186426_SNP [dm3] 3L_15193326_SNP [dm6]	G	T	9.117e^-6	1	INTERGENIC
X	3705371	X_3705371_SNP [dm3] X_3811338_SNP [dm6]	T	C	9.883e^-6	1	UPSTREAM ec DOWNSTREAM fd3F INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13860417	2R_13860417_SNP [dm3] 2R_17972912_SNP [dm6]	G	A	1.018e^-5	1	INTERGENIC
3R	9698944	3R_9698944_SNP [dm3] 3R_13873222_SNP [dm6]	T	A	1.041e^-5	1	INTRON E5	TF binding site mE1_TFBS_cad
3L	1275927	3L_1275927_SNP [dm3] 3L_1275927_SNP [dm6]	T	G	1.046e^-5	1	UPSTREAM CG32333 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	13153157	X_13153157_SNP [dm3] X_13259124_SNP [dm6]	C	T	1.079e^-5	1	UTR_5_PRIME comt UPSTREAM CG15742 & 1 other
3L	10101968	3L_10101968_SNP [dm3] 3L_10108868_SNP [dm6]	T	C	1.125e^-5	1	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
3L	8744765	3L_8744765_SNP [dm3] 3L_8751665_SNP [dm6]	C	T	1.192e^-5	1	EXON CR44527	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3467760	3L_3467760_SNP [dm3] 3L_3467760_SNP [dm6]	G	T	1.247e^-5	1	NON_SYNONYMOUS_CODING CycJ UTR_3_PRIME CycJ DOWNSTREAM CG14971
3L	3468506	3L_3468506_SNP [dm3] 3L_3468506_SNP [dm6]	C	A	1.247e^-5	1	UTR_3_PRIME CG14971 DOWNSTREAM CycJ
2R	8717051	2R_8717051_SNP [dm3] 2R_12829546_SNP [dm6]	T	G	1.253e^-5	1	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	20401614	2L_20401614_SNP [dm3] 2L_20401614_SNP [dm6]	C	T	1.256e^-5	1	INTRON CG10947
3L	10101971	3L_10101971_DEL [dm3] 3L_10108871_DEL [dm6]	TT	T	1.265e^-5	1	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
2R	17366933	2R_17366933_SNP [dm3] 2R_21479428_SNP [dm6]	T	A	1.294e^-5	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
2L	21788039	2L_21788039_SNP [dm3] 2L_21788039_SNP [dm6]	T	C	1.330e^-5	1	INTRON CG31612	TF binding site mE1_TFBS_HSA transposable element FlyBase
2R	20514458	2R_20514458_SNP [dm3] 2R_24626935_SNP [dm6]	C	T	1.418e^-5	1	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19766626	3R_19766626_SNP [dm3] 3R_23940904_SNP [dm6]	C	T	1.436e^-5	1	INTRON Gdh
3L	1491832	3L_1491832_SNP [dm3] 3L_1491832_SNP [dm6]	G	A	1.510e^-5	1	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	672790	2L_672790_SNP [dm3] 2L_672790_SNP [dm6]	T	C	1.653e^-5	1	INTRON ds	TF binding site mE1_TFBS_HSA
3L	10101824	3L_10101824_INS [dm3] 3L_10108724_INS [dm6]	T	TTTATAAATT	1.697e^-5	1	INTRON dpr6
2R	13860309	2R_13860309_SNP [dm3] 2R_17972804_SNP [dm6]	T	C	1.717e^-5	1	INTERGENIC
2R	5643635	2R_5643635_SNP [dm3] 2R_9756130_SNP [dm6]	G	A	1.756e^-5	1	SYNONYMOUS_CODING trpl DOWNSTREAM CG1690
2L	1635286	2L_1635286_SNP [dm3] 2L_1635286_SNP [dm6]	T	C	1.768e^-5	1	INTERGENIC
3R	10245642	3R_10245642_SNP [dm3] 3R_14419920_SNP [dm6]	T	C	1.792e^-5	1	INTRON cv-c & 1 other
2L	13310562	2L_13310562_SNP [dm3] 2L_13310562_SNP [dm6]	T	C	1.861e^-5	1	INTRON CG43778
3R	19293255	3R_19293255_SNP [dm3] 3R_23467533_SNP [dm6]	T	G	1.920e^-5	1	INTRON CG4374
3R	17793294	3R_17793294_SNP [dm3] 3R_21967572_SNP [dm6]	G	C	2.146e^-5	1	INTRON Eip93F
2L	672766	2L_672766_SNP [dm3] 2L_672766_SNP [dm6]	A	G	2.247e^-5	1	INTRON ds	TF binding site mE1_TFBS_HSA
3L	10283129	3L_10283129_SNP [dm3] 3L_10290029_SNP [dm6]	C	A	2.497e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10464425	3R_10464425_SNP [dm3] 3R_14638703_SNP [dm6]	G	T	2.520e^-5	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16257345	3R_16257345_SNP [dm3] 3R_20431623_SNP [dm6]	A	G	2.569e^-5	1	INTRON Gfrl
3R	23358350	3R_23358350_SNP [dm3] 3R_27532628_SNP [dm6]	G	A	2.688e^-5	1	SYNONYMOUS_CODING CG12885	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8023719	3L_8023719_SNP [dm3] 3L_8030619_SNP [dm6]	T	C	2.706e^-5	1	INTRON nmo
3L	10283082	3L_10283082_SNP [dm3] 3L_10289982_SNP [dm6]	G	T	2.848e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8023762	3L_8023762_SNP [dm3] 3L_8030662_SNP [dm6]	A	G	2.856e^-5	1	INTRON nmo
X	5575305	X_5575305_SNP [dm3] X_5681272_SNP [dm6]	G	A	3.184e^-5	1	SYNONYMOUS_CODING Gr5a EXON CR44958	TF binding site mE1_TFBS_cad
3R	21073552	3R_21073552_SNP [dm3] 3R_25247830_SNP [dm6]	A	G	3.220e^-5	1	UPSTREAM Nup37 & 1 other INTRON Nup37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	10283073	3L_10283073_SNP [dm3] 3L_10289973_SNP [dm6]	G	T	3.334e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	11693202	2L_11693202_SNP [dm3] 2L_11693202_SNP [dm6]	T	C	3.336e^-5	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	13860423	2R_13860423_SNP [dm3] 2R_17972918_SNP [dm6]	T	C	3.438e^-5	1	INTERGENIC
X	10746102	X_10746102_DEL [dm3] X_10852069_DEL [dm6]	CTTGCATCAGTGC...	C	3.584e^-5	1	UTR_3_PRIME CG2202 DOWNSTREAM feo	TF binding site mE1_TFBS_cad
2L	13310536	2L_13310536_SNP [dm3] 2L_13310536_SNP [dm6]	G	A	3.696e^-5	1	INTRON CG43778
3R	10248180	3R_10248180_SNP [dm3] 3R_14422458_SNP [dm6]	C	G	3.727e^-5	1	DOWNSTREAM natalisin INTRON cv-c EXON CR44176
3R	26542582	3R_26542582_SNP [dm3] 3R_30716860_SNP [dm6]	G	A	3.790e^-5	1	INTERGENIC
3L	1491923	3L_1491923_SNP [dm3] 3L_1491923_SNP [dm6]	G	A	3.836e^-5	1	INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	14540205	3R_14540205_SNP [dm3] 3R_18714483_SNP [dm6]	A	G	3.900e^-5	1	SYNONYMOUS_CODING VAChT INTRON Cha
3L	12404074	3L_12404074_SNP [dm3] 3L_12410974_SNP [dm6]	A	T	4.197e^-5	1	INTRON CG32103
3R	24574649	3R_24574649_SNP [dm3] 3R_28748927_SNP [dm6]	G	A	4.251e^-5	1	UTR_3_PRIME CG10000	TF binding site mE1_TFBS_chinmo
3R	27200894	3R_27200894_SNP [dm3] 3R_31375172_SNP [dm6]	G	T	4.432e^-5	1	DOWNSTREAM gskt INTERGENIC
3R	15099260	3R_15099260_SNP [dm3] 3R_19273538_SNP [dm6]	C	A	4.573e^-5	1	INTERGENIC
3R	4918479	3R_4918479_SNP [dm3] 3R_9092757_SNP [dm6]	T	C	4.593e^-5	1	INTRON pum
2R	20524562	2R_20524562_INS [dm3] 2R_24637039_INS [dm6]	G	GTTCTAAGTTTTCATTG...	4.625e^-5	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2R	20524611	2R_20524611_SNP [dm3] 2R_24637088_SNP [dm6]	T	A	4.702e^-5	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	1269381	3L_1269381_SNP [dm3] 3L_1269381_SNP [dm6]	G	A	4.751e^-5	1	INTRON CG9134
3L	1273531	3L_1273531_SNP [dm3] 3L_1273531_SNP [dm6]	C	G	4.780e^-5	1	INTRON CG9134
3R	16138212	3R_16138212_SNP [dm3] 3R_20312490_SNP [dm6]	C	T	4.810e^-5	1	INTRON CG42668
3L	1273264	3L_1273264_SNP [dm3] 3L_1273264_SNP [dm6]	A	T	4.835e^-5	1	INTRON CG9134
3L	1273267	3L_1273267_SNP [dm3] 3L_1273267_SNP [dm6]	C	G	4.835e^-5	1	INTRON CG9134
3R	23630469	3R_23630469_DEL [dm3] 3R_27804747_DEL [dm6]	GG	G	5.018e^-5	1	INTRON CG34353
2L	13310557	2L_13310557_SNP [dm3] 2L_13310557_SNP [dm6]	A	T	5.030e^-5	1	INTRON CG43778
3L	21968130	3L_21968130_SNP [dm3] 3L_21975030_SNP [dm6]	G	A	5.316e^-5	1	INTRON CG7470
3L	1261305	3L_1261305_SNP [dm3] 3L_1261305_SNP [dm6]	A	G	5.319e^-5	1	INTRON CG9134
3R	26481688	3R_26481688_SNP [dm3] 3R_30655966_SNP [dm6]	T	G	5.323e^-5	1	INTERGENIC
3L	1491889	3L_1491889_SNP [dm3] 3L_1491889_SNP [dm6]	C	T	5.403e^-5	1	SYNONYMOUS_CODING CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1273263	3L_1273263_SNP [dm3] 3L_1273263_SNP [dm6]	G	C	5.473e^-5	1	INTRON CG9134
3L	10166386	3L_10166386_SNP [dm3] 3L_10173286_SNP [dm6]	C	T	5.504e^-5	1	INTRON dpr10
X	11822640	X_11822640_SNP [dm3] X_11928607_SNP [dm6]	A	G	5.710e^-5	1	SYNONYMOUS_CODING CG10362
2R	13860306	2R_13860306_SNP [dm3] 2R_17972801_SNP [dm6]	A	T	5.745e^-5	1	INTERGENIC
X	19777797	X_19777797_INS [dm3] X_19883764_INS [dm6]	C	CATAC	5.800e^-5	1	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	21908202	X_21908202_SNP [dm3] X_22506366_SNP [dm6]	A	G	5.862e^-5	1	INTRON l_1_G0196
2R	20524511	2R_20524511_DEL [dm3] 2R_24636988_DEL [dm6]	CT	C	5.964e^-5	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3R	23869287	3R_23869287_SNP [dm3] 3R_28043565_SNP [dm6]	A	T	6.023e^-5	1	INTRON CG34362
X	16010164	X_16010164_SNP [dm3] X_16116131_SNP [dm6]	T	A	6.213e^-5	1	INTERGENIC
3L	8796526	3L_8796526_SNP [dm3] 3L_8803426_SNP [dm6]	C	T	6.253e^-5	1	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
3L	1495747	3L_1495747_SNP [dm3] 3L_1495747_SNP [dm6]	C	T	6.298e^-5	1	INTRON CG12084	TF binding site BDTNP1_TFBS_dl
3L	17475875	3L_17475875_SNP [dm3] 3L_17482775_SNP [dm6]	C	T	6.334e^-5	1	INTRON CG6333
3L	9305767	3L_9305767_SNP [dm3] 3L_9312667_SNP [dm6]	C	T	6.349e^-5	1	INTERGENIC
2R	20213635	2R_20213635_SNP [dm3] 2R_24326112_SNP [dm6]	G	A	6.363e^-5	1	INTRON CR44810
3R	26481685	3R_26481685_SNP [dm3] 3R_30655963_SNP [dm6]	A	G	6.401e^-5	1	INTERGENIC
2L	11668299	2L_11668299_SNP [dm3] 2L_11668299_SNP [dm6]	G	A	6.451e^-5	1	INTERGENIC
2R	17840108	2R_17840108_SNP [dm3] 2R_21952603_SNP [dm6]	G	T	6.564e^-5	1	DOWNSTREAM CG13488 INTERGENIC	TF binding site mE1_TFBS_inv
2L	4609387	2L_4609387_DEL [dm3] 2L_4609387_DEL [dm6]	AT	G	6.645e^-5	1	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26633501	3R_26633501_SNP [dm3] 3R_30807779_SNP [dm6]	C	T	6.851e^-5	1	SYNONYMOUS_CODING dj-1beta UPSTREAM cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	7263113	2L_7263113_SNP [dm3] 2L_7263113_SNP [dm6]	G	C	6.895e^-5	1	INTRON Wnt4	TF binding site mE1_TFBS_cad
3L	13260162	3L_13260162_SNP [dm3] 3L_13267062_SNP [dm6]	T	C	6.914e^-5	1	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10901196	3L_10901196_SNP [dm3] 3L_10908096_SNP [dm6]	T	C	6.947e^-5	1	INTERGENIC
3L	5096637	3L_5096637_SNP [dm3] 3L_5096637_SNP [dm6]	C	A	6.998e^-5	1	INTERGENIC
X	16010160	X_16010160_SNP [dm3] X_16116127_SNP [dm6]	G	T	7.183e^-5	1	INTERGENIC
X	16010161	X_16010161_SNP [dm3] X_16116128_SNP [dm6]	T	A	7.183e^-5	1	INTERGENIC
2R	16381813	2R_16381813_INS [dm3] 2R_20494308_INS [dm6]	C	CATCC	7.194e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8259604	3L_8259604_INS [dm3] 3L_8266504_INS [dm6]	A	ATATA	7.264e^-5	1	INTRON Dscam4
3L	4599980	3L_4599980_SNP [dm3] 3L_4599980_SNP [dm6]	G	A	7.319e^-5	1	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5336233	X_5336233_SNP [dm3] X_5442200_SNP [dm6]	T	G	7.399e^-5	1	INTERGENIC
2L	609077	2L_609077_SNP [dm3] 2L_609077_SNP [dm6]	C	G	7.539e^-5	1	EXON CR43649
3L	16167921	3L_16167921_SNP [dm3] 3L_16174821_SNP [dm6]	A	G	7.569e^-5	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9380457	3R_9380457_SNP [dm3] 3R_13554735_SNP [dm6]	G	A	7.633e^-5	1	INTERGENIC
3R	972973	3R_972973_SNP [dm3] 3R_5147251_SNP [dm6]	T	C	7.648e^-5	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	14331432	3L_14331432_SNP [dm3] 3L_14338332_SNP [dm6]	A	G	7.826e^-5	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
3L	1495375	3L_1495375_SNP [dm3] 3L_1495375_SNP [dm6]	T	A	7.843e^-5	1	INTRON CG12084
2R	4224548	2R_4224548_SNP [dm3] 2R_8337043_SNP [dm6]	C	A	7.889e^-5	1	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	3705025	X_3705025_SNP [dm3] X_3810992_SNP [dm6]	T	C	7.909e^-5	1	UTR_3_PRIME fd3F UPSTREAM ec	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	2380396	3L_2380396_DEL [dm3] 3L_2380396_DEL [dm6]	AAACAAATTGCCGGCTTTCT...	A	7.921e^-5	1	INTRON CG45186
3L	16182760	3L_16182760_SNP [dm3] 3L_16189660_SNP [dm6]	T	C	7.987e^-5	1	INTERGENIC
2L	13310579	2L_13310579_SNP [dm3] 2L_13310579_SNP [dm6]	C	G	8.107e^-5	1	INTRON CG43778
3R	26676392	3R_26676392_SNP [dm3] 3R_30850670_SNP [dm6]	C	G	8.204e^-5	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9303266	2R_9303266_SNP [dm3] 2R_13415761_SNP [dm6]	C	A	8.262e^-5	1	INTRON CG42321	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9802590	3R_9802590_SNP [dm3] 3R_13976868_SNP [dm6]	A	G	8.320e^-5	1	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	19148478	2R_19148478_SNP [dm3] 2R_23260955_SNP [dm6]	G	A	8.644e^-5	1	INTERGENIC
2L	17503532	2L_17503532_SNP [dm3] 2L_17503532_SNP [dm6]	G	A	8.647e^-5	1	INTRON Dhc36C
3R	19739058	3R_19739058_SNP [dm3] 3R_23913336_SNP [dm6]	G	T	8.686e^-5	1	INTRON sba
3L	1273675	3L_1273675_SNP [dm3] 3L_1273675_SNP [dm6]	G	T	8.755e^-5	1	INTRON CG9134
3R	5015793	3R_5015793_SNP [dm3] 3R_9190071_SNP [dm6]	G	C	8.812e^-5	1	INTRON pum
2R	4549914	2R_4549914_SNP [dm3] 2R_8662409_SNP [dm6]	C	G	8.849e^-5	1	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	20524581	2R_20524581_SNP [dm3] 2R_24637058_SNP [dm6]	T	A	8.881e^-5	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3R	10223284	3R_10223284_SNP [dm3] 3R_14397562_SNP [dm6]	A	T	8.911e^-5	1	INTRON cv-c
2L	14884832	2L_14884832_SNP [dm3] 2L_14884832_SNP [dm6]	A	C	8.923e^-5	1	UPSTREAM CR45302 INTERGENIC
3R	23630559	3R_23630559_SNP [dm3] 3R_27804837_SNP [dm6]	C	T	9.055e^-5	1	INTRON CG34353
3L	8772272	3L_8772272_SNP [dm3] 3L_8779172_SNP [dm6]	C	T	9.109e^-5	1	INTRON Fhos	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8049389	3L_8049389_SNP [dm3] 3L_8056289_SNP [dm6]	A	T	9.122e^-5	1	INTRON bip1	TF binding site mE1_TFBS_Trl
X	2223195	X_2223195_SNP [dm3] X_2329162_SNP [dm6]	G	A	9.345e^-5	1	UPSTREAM CR33218 DOWNSTREAM CG2854 INTRON phl
2R	13860305	2R_13860305_SNP [dm3] 2R_17972800_SNP [dm6]	T	G	9.373e^-5	1	INTERGENIC
3L	4368138	3L_4368138_SNP [dm3] 3L_4368138_SNP [dm6]	A	C	9.375e^-5	1	UTR_3_PRIME DopEcR UPSTREAM CG11342 DOWNSTREAM DopEcR	TF binding site mE1_TFBS_sens
2R	6230773	2R_6230773_SNP [dm3] 2R_10343268_SNP [dm6]	C	T	9.482e^-5	1	INTRON CG42732
2L	8750335	2L_8750335_SNP [dm3] 2L_8750335_SNP [dm6]	T	A	9.841e^-5	1	INTERGENIC
2R	20524601	2R_20524601_DEL [dm3] 2R_24637078_DEL [dm6]	ACCA	A	9.854e^-5	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	19914141	2L_19914141_SNP [dm3] 2L_19914141_SNP [dm6]	A	C	9.886e^-5	1	UPSTREAM Victoria INTRON sick
3R	9802727	3R_9802727_SNP [dm3] 3R_13977005_SNP [dm6]	C	A	9.913e^-5	1	INTRON rdx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27167010	3R_27167010_SNP [dm3] 3R_31341288_SNP [dm6]	G	C	1.025e^-4	1	INTRON CG34347
3R	24818359	3R_24818359_SNP [dm3] 3R_28992637_SNP [dm6]	G	C	1.040e^-4	1	DOWNSTREAM wat INTERGENIC
2R	20524475	2R_20524475_DEL [dm3] 2R_24636952_DEL [dm6]	AGCTTTCCTCAGAAAATATT...	A	1.044e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3R	19293477	3R_19293477_SNP [dm3] 3R_23467755_SNP [dm6]	T	A	1.049e^-4	1	INTRON CG4374
2R	17327145	2R_17327145_INS [dm3] 2R_21439640_INS [dm6]	A	GTTTTTGGGGC...	1.054e^-4	1	INTRON Sdc
2R	9878533	2R_9878533_SNP [dm3] 2R_13991028_SNP [dm6]	C	T	1.066e^-4	1	UPSTREAM mam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12306506	2L_12306506_SNP [dm3] 2L_12306506_SNP [dm6]	C	T	1.068e^-4	1	INTRON aret
3L	4117018	3L_4117018_SNP [dm3] 3L_4117018_SNP [dm6]	A	G	1.070e^-4	1	INTRON Chd64
X	8013096	X_8013096_SNP [dm3] X_8119063_SNP [dm6]	T	C	1.079e^-4	1	UTR_3_PRIME CG1575 DOWNSTREAM CG2260
X	8013106	X_8013106_SNP [dm3] X_8119073_SNP [dm6]	G	C	1.079e^-4	1	UTR_3_PRIME CG1575 DOWNSTREAM CG2260
3L	12231734	3L_12231734_SNP [dm3] 3L_12238634_SNP [dm6]	A	C	1.087e^-4	1	INTRON app
3L	14326662	3L_14326662_SNP [dm3] 3L_14333562_SNP [dm6]	A	G	1.088e^-4	1	INTRON fz
X	5327494	X_5327494_SNP [dm3] X_5433461_SNP [dm6]	C	G	1.093e^-4	1	DOWNSTREAM CG15784 EXON CR44471	TF binding site mE1_TFBS_Trl
2R	4417169	2R_4417169_SNP [dm3] 2R_8529664_SNP [dm6]	C	T	1.095e^-4	1	INTRON mtt
3R	25918857	3R_25918857_SNP [dm3] 3R_30093135_SNP [dm6]	G	A	1.097e^-4	1	INTRON sima
2R	7055444	2R_7055444_SNP [dm3] 2R_11167939_SNP [dm6]	T	C	1.099e^-4	1	INTRON shn & 1 other
2R	4477951	2R_4477951_DEL [dm3] 2R_8590446_DEL [dm6]	AC	A	1.100e^-4	1	UPSTREAM CG14752 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11203292	2R_11203292_SNP [dm3] 2R_15315787_SNP [dm6]	C	T	1.108e^-4	1	NON_SYNONYMOUS_CODING mus210
3R	26638290	3R_26638290_SNP [dm3] 3R_30812568_SNP [dm6]	A	G	1.108e^-4	1	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	12349993	2R_12349993_SNP [dm3] 2R_16462488_SNP [dm6]	A	C	1.115e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8239469	2R_8239469_SNP [dm3] 2R_12351964_SNP [dm6]	A	G	1.139e^-4	1	SYNONYMOUS_CODING CG30047 DOWNSTREAM ana3	TF binding site BDTNP1_TFBS_prd
2L	7141794	2L_7141794_SNP [dm3] 2L_7141794_SNP [dm6]	A	T	1.140e^-4	1	UPSTREAM CR44612 INTRON Pvf3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	20873709	3R_20873709_SNP [dm3] 3R_25047987_SNP [dm6]	T	C	1.145e^-4	1	UTR_5_PRIME CG11790 DOWNSTREAM CG11786 INTRON CG11790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12203233	3L_12203233_SNP [dm3] 3L_12210133_SNP [dm6]	A	T	1.145e^-4	1	UTR_3_PRIME app INTRON app
3L	3724993	3L_3724993_SNP [dm3] 3L_3724993_SNP [dm6]	T	G	1.146e^-4	1	INTRON CG32264
3R	26677953	3R_26677953_SNP [dm3] 3R_30852231_SNP [dm6]	T	G	1.149e^-4	1	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	630398	3L_630398_SNP [dm3] 3L_630398_SNP [dm6]	T	A	1.152e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12237835	3L_12237835_DEL [dm3] 3L_12244735_DEL [dm6]	CAAGGAC	C	1.163e^-4	1	DOWNSTREAM CR43991 INTRON app
2L	3084981	2L_3084981_SNP [dm3] 2L_3084981_SNP [dm6]	A	G	1.163e^-4	1	INTRON toc
2R	4224129	2R_4224129_SNP [dm3] 2R_8336624_SNP [dm6]	A	C	1.164e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	5215833	X_5215833_SNP [dm3] X_5321800_SNP [dm6]	G	A	1.164e^-4	1	INTRON Rnp4F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10901215	3L_10901215_SNP [dm3] 3L_10908115_SNP [dm6]	G	A	1.165e^-4	1	INTERGENIC
3R	25448316	3R_25448316_SNP [dm3] 3R_29622594_SNP [dm6]	G	T	1.166e^-4	1	INTERGENIC
3R	25066762	3R_25066762_SNP [dm3] 3R_29241040_SNP [dm6]	A	C	1.169e^-4	1	UPSTREAM CG31427 INTRON CG31445
X	13148434	X_13148434_SNP [dm3] X_13254401_SNP [dm6]	A	T	1.173e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13232554	2L_13232554_SNP [dm3] 2L_13232554_SNP [dm6]	C	T	1.180e^-4	1	SYNONYMOUS_CODING Prosalpha6T	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	1273669	3L_1273669_SNP [dm3] 3L_1273669_SNP [dm6]	G	A	1.186e^-4	1	INTRON CG9134
X	8011549	X_8011549_SNP [dm3] X_8117516_SNP [dm6]	G	A	1.187e^-4	1	SYNONYMOUS_CODING CG1575	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	3007700	3R_3007700_SNP [dm3] 3R_7181978_SNP [dm6]	C	T	1.210e^-4	1	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3559061	3L_3559061_SNP [dm3] 3L_3559061_SNP [dm6]	A	G	1.213e^-4	1	INTRON Eip63E
3L	12813618	3L_12813618_SNP [dm3] 3L_12820518_SNP [dm6]	A	C	1.220e^-4	1	SYNONYMOUS_CODING CG42588
3L	16551309	3L_16551309_SNP [dm3] 3L_16558209_SNP [dm6]	T	A	1.225e^-4	1	DOWNSTREAM CG4229 INTERGENIC
2L	9587645	2L_9587645_SNP [dm3] 2L_9587645_SNP [dm6]	T	A	1.226e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14165617	3L_14165617_SNP [dm3] 3L_14172517_SNP [dm6]	T	A	1.227e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5192705	3L_5192705_SNP [dm3] 3L_5199605_SNP [dm6]	C	T	1.228e^-4	1	INTRON shep
3L	12229801	3L_12229801_SNP [dm3] 3L_12236701_SNP [dm6]	G	A	1.231e^-4	1	INTRON app	transposable element FlyBase
3L	8259570	3L_8259570_SNP [dm3] 3L_8266470_SNP [dm6]	T	C	1.261e^-4	1	INTRON Dscam4
3L	5424202	3L_5424202_SNP [dm3] 3L_5431102_SNP [dm6]	T	C	1.269e^-4	1	INTRON CG34391
3R	14914535	3R_14914535_SNP [dm3] 3R_19088813_SNP [dm6]	G	A	1.291e^-4	1	INTRON cdi
2L	9412206	2L_9412206_SNP [dm3] 2L_9412206_SNP [dm6]	G	A	1.293e^-4	1	INTRON Shawl
3R	21252050	3R_21252050_SNP [dm3] 3R_25426328_SNP [dm6]	T	C	1.300e^-4	1	INTRON Fur1
2R	13860357	2R_13860357_SNP [dm3] 2R_17972852_SNP [dm6]	C	A	1.305e^-4	1	INTERGENIC
3R	23378485	3R_23378485_SNP [dm3] 3R_27552763_SNP [dm6]	G	A	1.315e^-4	1	INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	17840115	2R_17840115_SNP [dm3] 2R_21952610_SNP [dm6]	T	A	1.320e^-4	1	DOWNSTREAM CG13488 INTERGENIC	TF binding site mE1_TFBS_inv
3L	4117080	3L_4117080_SNP [dm3] 3L_4117080_SNP [dm6]	C	T	1.335e^-4	1	INTRON Chd64
2R	17323532	2R_17323532_SNP [dm3] 2R_21436027_SNP [dm6]	A	G	1.336e^-4	1	INTRON Sdc
3R	4699462	3R_4699462_DEL [dm3] 3R_8873740_DEL [dm6]	CGAAAGGTGGAGCAAC...	C	1.339e^-4	1	INTRON pyd	TF binding site mE1_TFBS_cad
3R	17902791	3R_17902791_SNP [dm3] 3R_22077069_SNP [dm6]	G	A	1.351e^-4	1	INTRON how	TF binding site mE1_TFBS_kn
3L	9137312	3L_9137312_SNP [dm3] 3L_9144212_SNP [dm6]	C	A	1.354e^-4	1	NON_SYNONYMOUS_CODING nwk UTR_3_PRIME nwk UPSTREAM mir-4940	TF binding site mE1_TFBS_cad
3R	23378476	3R_23378476_SNP [dm3] 3R_27552754_SNP [dm6]	A	G	1.355e^-4	1	INTRON Klp98A	TF binding site mE1_TFBS_cad
3R	10247780	3R_10247780_DEL [dm3] 3R_14422058_DEL [dm6]	TT	T	1.357e^-4	1	DOWNSTREAM natalisin INTRON cv-c & 1 other
3R	7763372	3R_7763372_DEL [dm3] 3R_11937650_DEL [dm6]	AA	A	1.357e^-4	1	INTRON Cad87A
3L	12235734	3L_12235734_SNP [dm3] 3L_12242634_SNP [dm6]	G	T	1.368e^-4	1	INTRON app
3R	5095965	3R_5095965_SNP [dm3] 3R_9270243_SNP [dm6]	A	C	1.381e^-4	1	DOWNSTREAM Vps16A INTERGENIC
3L	13043471	3L_13043471_SNP [dm3] 3L_13050371_SNP [dm6]	C	G	1.390e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26673061	3R_26673061_SNP [dm3] 3R_30847339_SNP [dm6]	T	G	1.390e^-4	1	INTERGENIC
3L	16159064	3L_16159064_SNP [dm3] 3L_16165964_SNP [dm6]	A	G	1.392e^-4	1	INTERGENIC
3L	630500	3L_630500_SNP [dm3] 3L_630500_SNP [dm6]	T	C	1.394e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	21073563	3R_21073563_SNP [dm3] 3R_25247841_SNP [dm6]	T	C	1.402e^-4	1	UPSTREAM Nup37 & 1 other INTRON Nup37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3R	9786981	3R_9786981_SNP [dm3] 3R_13961259_SNP [dm6]	T	G	1.405e^-4	1	NON_SYNONYMOUS_CODING CG9925 DOWNSTREAM Ipp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	1016008	3R_1016008_SNP [dm3] 3R_5190286_SNP [dm6]	T	A	1.425e^-4	1	INTRON cno
2R	4477939	2R_4477939_SNP [dm3] 2R_8590434_SNP [dm6]	T	G	1.447e^-4	1	UPSTREAM CG14752 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	1021617	3R_1021617_SNP [dm3] 3R_5195895_SNP [dm6]	G	A	1.455e^-4	1	UPSTREAM snRNA:U4atac:82E INTRON cno
3L	3559043	3L_3559043_SNP [dm3] 3L_3559043_SNP [dm6]	A	T	1.464e^-4	1	INTRON Eip63E
2R	20524510	2R_20524510_SNP [dm3] 2R_24636987_SNP [dm6]	C	A	1.472e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	16063611	2L_16063611_SNP [dm3] 2L_16063611_SNP [dm6]	T	G	1.474e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3R	1937300	3R_1937300_DEL [dm3] 3R_6111578_DEL [dm6]	TATTTAGTACTTACAT...	T	1.480e^-4	1	UPSTREAM Obp83ef DOWNSTREAM Obp83g INTERGENIC	regulatory region REDfly_CRMs
3L	21968129	3L_21968129_SNP [dm3] 3L_21975029_SNP [dm6]	T	C	1.487e^-4	1	INTRON CG7470
3L	630534	3L_630534_SNP [dm3] 3L_630534_SNP [dm6]	A	G	1.494e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1008746	3R_1008746_SNP [dm3] 3R_5183024_SNP [dm6]	C	T	1.497e^-4	1	INTRON cno
X	20891594	X_20891594_SNP [dm3] X_21020567_SNP [dm6]	G	C	1.507e^-4	1	INTERGENIC
2L	672946	2L_672946_SNP [dm3] 2L_672946_SNP [dm6]	C	T	1.518e^-4	1	INTRON ds
3L	12235751	3L_12235751_SNP [dm3] 3L_12242651_SNP [dm6]	T	A	1.530e^-4	1	INTRON app
2L	16336002	2L_16336002_SNP [dm3] 2L_16336002_SNP [dm6]	T	C	1.543e^-4	1	SYNONYMOUS_CODING CG31817
3L	12231762	3L_12231762_SNP [dm3] 3L_12238662_SNP [dm6]	G	A	1.548e^-4	1	INTRON app
2R	15857574	2R_15857574_SNP [dm3] 2R_19970069_SNP [dm6]	C	T	1.554e^-4	1	INTERGENIC
3R	1021666	3R_1021666_SNP [dm3] 3R_5195944_SNP [dm6]	A	T	1.561e^-4	1	UPSTREAM snRNA:U4atac:82E INTRON cno
3L	15643061	3L_15643061_SNP [dm3] 3L_15649961_SNP [dm6]	C	A	1.562e^-4	1	UTR_5_PRIME Eig71Eb UPSTREAM Eig71Ea & 1 other DOWNSTREAM CG43083
2R	6873441	2R_6873441_SNP [dm3] 2R_10985936_SNP [dm6]	A	T	1.562e^-4	1	INTRON luna
2R	11184468	2R_11184468_SNP [dm3] 2R_15296963_SNP [dm6]	A	G	1.572e^-4	1	SYNONYMOUS_CODING CG8102 INTRON Trpm	TF binding site mE1_TFBS_cad
3R	9698947	3R_9698947_SNP [dm3] 3R_13873225_SNP [dm6]	G	T	1.599e^-4	1	INTRON E5	TF binding site mE1_TFBS_cad
3L	1546914	3L_1546914_SNP [dm3] 3L_1546914_SNP [dm6]	G	A	1.606e^-4	1	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	1019924	3R_1019924_INS [dm3] 3R_5194202_INS [dm6]	A	AGT	1.613e^-4	1	DOWNSTREAM snRNA:U4atac:82E INTRON cno
2L	11864611	2L_11864611_SNP [dm3] 2L_11864611_SNP [dm6]	C	T	1.620e^-4	1	INTRON Pde1c
3R	26079177	3R_26079177_SNP [dm3] 3R_30253455_SNP [dm6]	G	T	1.628e^-4	1	DOWNSTREAM CG9682 INTRON CG18404
2R	13380820	2R_13380820_SNP [dm3] 2R_17493315_SNP [dm6]	G	A	1.632e^-4	1	UPSTREAM CG30103 DOWNSTREAM NT5E-2 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	20873728	3R_20873728_SNP [dm3] 3R_25048006_SNP [dm6]	C	T	1.634e^-4	1	START_GAINED CG11790 UTR_5_PRIME CG11790 DOWNSTREAM CG11786 INTRON CG11790	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20115092	2L_20115092_SNP [dm3] 2L_20115092_SNP [dm6]	A	C	1.636e^-4	1	INTERGENIC
3R	4722975	3R_4722975_SNP [dm3] 3R_8897253_SNP [dm6]	A	G	1.649e^-4	1	INTRON pyd
2L	20115168	2L_20115168_SNP [dm3] 2L_20115168_SNP [dm6]	G	C	1.654e^-4	1	INTERGENIC
X	11786671	X_11786671_SNP [dm3] X_11892638_SNP [dm6]	A	T	1.654e^-4	1	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	4108246	2R_4108246_SNP [dm3] 2R_8220741_SNP [dm6]	G	C	1.654e^-4	1	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_inv
X	21908181	X_21908181_SNP [dm3] X_22506345_SNP [dm6]	C	A	1.663e^-4	1	INTRON l_1_G0196
3R	23630648	3R_23630648_SNP [dm3] 3R_27804926_SNP [dm6]	C	A	1.670e^-4	1	INTRON CG34353
3L	1269786	3L_1269786_SNP [dm3] 3L_1269786_SNP [dm6]	C	G	1.678e^-4	1	INTRON CG9134
2R	20524606	2R_20524606_DEL [dm3] 2R_24637083_DEL [dm6]	AAC	A	1.686e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	10113920	3L_10113920_SNP [dm3] 3L_10120820_SNP [dm6]	A	T	1.690e^-4	1	INTRON dpr6
2R	16774799	2R_16774799_SNP [dm3] 2R_20887294_SNP [dm6]	A	C	1.695e^-4	1	INTRON otp
2R	17244282	2R_17244282_SNP [dm3] 2R_21356777_SNP [dm6]	G	A	1.704e^-4	1	SYNONYMOUS_CODING cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11994145	2R_11994145_SNP [dm3] 2R_16106640_SNP [dm6]	G	A	1.715e^-4	1	UTR_3_PRIME Rho1 DOWNSTREAM Ric & 1 other	TF binding site mE1_TFBS_HSA
3R	22880174	3R_22880174_SNP [dm3] 3R_27054452_SNP [dm6]	T	C	1.721e^-4	1	INTRON RYa-R
2R	14888553	2R_14888553_SNP [dm3] 2R_19001048_SNP [dm6]	G	A	1.725e^-4	1	NON_SYNONYMOUS_CODING tn INTRON tn	TF binding site mE1_TFBS_HSA
3R	10246346	3R_10246346_SNP [dm3] 3R_14420624_SNP [dm6]	C	G	1.730e^-4	1	NON_SYNONYMOUS_CODING natalisin INTRON cv-c	TF binding site mE1_TFBS_cad
2L	19382509	2L_19382509_SNP [dm3] 2L_19382509_SNP [dm6]	T	C	1.740e^-4	1	DOWNSTREAM fon INTRON CG17350	TF binding site mE1_TFBS_cad
3L	17475903	3L_17475903_SNP [dm3] 3L_17482803_SNP [dm6]	T	A	1.754e^-4	1	INTRON CG6333
3L	8023975	3L_8023975_SNP [dm3] 3L_8030875_SNP [dm6]	T	A	1.767e^-4	1	INTRON nmo
3L	7410630	3L_7410630_SNP [dm3] 3L_7417530_SNP [dm6]	A	G	1.772e^-4	1	INTERGENIC
3R	26542596	3R_26542596_SNP [dm3] 3R_30716874_SNP [dm6]	G	T	1.775e^-4	1	INTERGENIC
3L	2221077	3L_2221077_SNP [dm3] 3L_2221077_SNP [dm6]	T	A	1.780e^-4	1	INTERGENIC
3R	22880159	3R_22880159_SNP [dm3] 3R_27054437_SNP [dm6]	C	A	1.780e^-4	1	INTRON RYa-R
2R	17189631	2R_17189631_SNP [dm3] 2R_21302126_SNP [dm6]	C	A	1.788e^-4	1	UTR_5_PRIME CG42672 INTRON CG42672
2R	18025394	2R_18025394_SNP [dm3] 2R_22137889_SNP [dm6]	A	C	1.791e^-4	1	UTR_5_PRIME a INTRON a
2L	2504784	2L_2504784_SNP [dm3] 2L_2504784_SNP [dm6]	C	T	1.800e^-4	1	INTERGENIC
3L	11593458	3L_11593458_SNP [dm3] 3L_11600358_SNP [dm6]	C	T	1.807e^-4	1	UPSTREAM CG14137 INTRON CG7368
2L	8179246	2L_8179246_SNP [dm3] 2L_8179246_SNP [dm6]	C	T	1.817e^-4	1	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12486724	2R_12486724_SNP [dm3] 2R_16599219_SNP [dm6]	T	C	1.836e^-4	1	SYNONYMOUS_CODING CG5089 INTRON CG8303
2R	4233611	2R_4233611_SNP [dm3] 2R_8346106_SNP [dm6]	C	T	1.837e^-4	1	INTRON pdm3	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	5444801	2L_5444801_SNP [dm3] 2L_5444801_SNP [dm6]	T	A	1.864e^-4	1	INTERGENIC
3L	10069838	3L_10069838_SNP [dm3] 3L_10076738_SNP [dm6]	C	G	1.869e^-4	1	INTRON dpr6
2L	12319998	2L_12319998_SNP [dm3] 2L_12319998_SNP [dm6]	G	A	1.871e^-4	1	INTERGENIC
3R	15226707	3R_15226707_SNP [dm3] 3R_19400985_SNP [dm6]	T	A	1.875e^-4	1	SYNONYMOUS_CODING Ino80	TF binding site mE1_TFBS_sens
3R	17059003	3R_17059003_SNP [dm3] 3R_21233281_SNP [dm6]	A	T	1.878e^-4	1	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	4549908	2R_4549908_SNP [dm3] 2R_8662403_SNP [dm6]	G	A	1.883e^-4	1	SYNONYMOUS_CODING ptc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11668007	2L_11668007_SNP [dm3] 2L_11668007_SNP [dm6]	T	C	1.884e^-4	1	INTERGENIC
2L	13359416	2L_13359416_SNP [dm3] 2L_13359416_SNP [dm6]	C	G	1.892e^-4	1	DOWNSTREAM CG9377 INTERGENIC
2R	18589434	2R_18589434_SNP [dm3] 2R_22701929_SNP [dm6]	A	G	1.895e^-4	1	SYNONYMOUS_CODING CG30259 UPSTREAM robo & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	12199717	2R_12199717_SNP [dm3] 2R_16312212_SNP [dm6]	G	A	1.895e^-4	1	INTRON Nox
2L	17472509	2L_17472509_SNP [dm3] 2L_17472509_SNP [dm6]	A	T	1.900e^-4	1	UTR_5_PRIME BicD UPSTREAM Sgt INTRON Sgt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18784738	3R_18784738_SNP [dm3] 3R_22959016_SNP [dm6]	A	G	1.903e^-4	1	INTRON klg
3L	5192582	3L_5192582_SNP [dm3] 3L_5199482_SNP [dm6]	C	T	1.909e^-4	1	INTRON shep
3L	19467253	3L_19467253_INS [dm3] 3L_19474153_INS [dm6]	A	AGA	1.918e^-4	1	DOWNSTREAM CG18294 INTERGENIC	TF binding site mE1_TFBS_inv
2L	614463	2L_614463_SNP [dm3] 2L_614463_SNP [dm6]	A	G	1.919e^-4	1	INTERGENIC
2R	13860492	2R_13860492_SNP [dm3] 2R_17972987_SNP [dm6]	G	A	1.922e^-4	1	INTERGENIC
3R	14779849	3R_14779849_SNP [dm3] 3R_18954127_SNP [dm6]	C	G	1.931e^-4	1	INTRON CG42613 & 1 other
2L	2478744	2L_2478744_SNP [dm3] 2L_2478744_SNP [dm6]	T	C	1.936e^-4	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2R	17071979	2R_17071979_SNP [dm3] 2R_21184474_SNP [dm6]	T	G	1.939e^-4	1	INTRON tud	TF binding site mE1_TFBS_sens
2R	15953421	2R_15953421_SNP [dm3] 2R_20065916_SNP [dm6]	T	C	1.940e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	11186478	X_11186478_SNP [dm3] X_11292445_SNP [dm6]	G	C	1.944e^-4	1	INTRON CG44422
X	6119437	X_6119437_SNP [dm3] X_6225404_SNP [dm6]	C	A	1.947e^-4	1	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2310576	3L_2310576_SNP [dm3] 3L_2310576_SNP [dm6]	C	T	1.954e^-4	1	INTERGENIC
X	11786647	X_11786647_SNP [dm3] X_11892614_SNP [dm6]	C	T	1.957e^-4	1	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	11786670	X_11786670_SNP [dm3] X_11892637_SNP [dm6]	G	A	1.957e^-4	1	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	11786684	X_11786684_SNP [dm3] X_11892651_SNP [dm6]	A	C	1.957e^-4	1	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	18218476	3L_18218476_SNP [dm3] 3L_18225376_SNP [dm6]	T	G	1.958e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3R	9698948	3R_9698948_SNP [dm3] 3R_13873226_SNP [dm6]	C	T	1.986e^-4	1	INTRON E5	TF binding site mE1_TFBS_cad
3L	2380465	3L_2380465_SNP [dm3] 3L_2380465_SNP [dm6]	G	A	1.999e^-4	1	INTRON CG45186
3R	23378488	3R_23378488_SNP [dm3] 3R_27552766_SNP [dm6]	T	C	2.001e^-4	1	INTRON Klp98A	TF binding site mE1_TFBS_cad
2L	11252871	2L_11252871_SNP [dm3] 2L_11252871_SNP [dm6]	C	T	2.022e^-4	1	INTRON ab
2R	9693005	2R_9693005_SNP [dm3] 2R_13805500_SNP [dm6]	A	C	2.024e^-4	1	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	9384896	3R_9384896_SNP [dm3] 3R_13559174_SNP [dm6]	C	T	2.026e^-4	1	INTERGENIC
2R	13774935	2R_13774935_SNP [dm3] 2R_17887430_SNP [dm6]	A	G	2.040e^-4	1	SYNONYMOUS_CODING PPO1 INTRON Elk
3R	8984860	3R_8984860_SNP [dm3] 3R_13159138_SNP [dm6]	T	G	2.042e^-4	1	INTRON timeout
3R	7739951	3R_7739951_DEL [dm3] 3R_11914229_DEL [dm6]	GC	G	2.044e^-4	1	INTRON Cad87A
3L	10102010	3L_10102010_SNP [dm3] 3L_10108910_SNP [dm6]	C	T	2.054e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_twi
3R	2219422	3R_2219422_DEL [dm3] 3R_6393700_DEL [dm6]	CC	C	2.060e^-4	1	INTRON Dmtn
3L	5264323	3L_5264323_DEL [dm3] 3L_5271223_DEL [dm6]	TCCATCAAGAGGTATATTCC...	T	2.072e^-4	1	INTRON shep
2L	15746171	2L_15746171_SNP [dm3] 2L_15746171_SNP [dm6]	A	C	2.079e^-4	1	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	7861154	2R_7861154_SNP [dm3] 2R_11973649_SNP [dm6]	C	T	2.091e^-4	1	SYNONYMOUS_CODING CG8290 INTRON CG8290
2L	7208784	2L_7208784_SNP [dm3] 2L_7208784_SNP [dm6]	C	T	2.105e^-4	1	INTRON CG13784
2R	16180324	2R_16180324_SNP [dm3] 2R_20292819_SNP [dm6]	A	C	2.109e^-4	1	UPSTREAM Cpr56F EXON CR44638	TF binding site BDTNP1_TFBS_prd
2L	609640	2L_609640_SNP [dm3] 2L_609640_SNP [dm6]	T	A	2.110e^-4	1	UPSTREAM CR43649 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2162765	3L_2162765_SNP [dm3] 3L_2162765_SNP [dm6]	A	T	2.119e^-4	1	INTRON CG15822
3L	2162775	3L_2162775_SNP [dm3] 3L_2162775_SNP [dm6]	C	T	2.119e^-4	1	INTRON CG15822
3L	2162760	3L_2162760_SNP [dm3] 3L_2162760_SNP [dm6]	G	T	2.130e^-4	1	INTRON CG15822
3R	23370517	3R_23370517_SNP [dm3] 3R_27544795_SNP [dm6]	A	G	2.139e^-4	1	NON_SYNONYMOUS_CODING Gr98c DOWNSTREAM Gr98b
3R	1016009	3R_1016009_SNP [dm3] 3R_5190287_SNP [dm6]	G	A	2.146e^-4	1	INTRON cno
2R	13965604	2R_13965604_SNP [dm3] 2R_18078099_SNP [dm6]	G	A	2.171e^-4	1	INTRON CG34386
3L	1274797	3L_1274797_SNP [dm3] 3L_1274797_SNP [dm6]	C	A	2.177e^-4	1	DOWNSTREAM CG9134 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3356179	3L_3356179_SNP [dm3] 3L_3356179_SNP [dm6]	T	C	2.178e^-4	1	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	3559123	3L_3559123_SNP [dm3] 3L_3559123_SNP [dm6]	G	A	2.179e^-4	1	INTRON Eip63E
3L	1697206	3L_1697206_SNP [dm3] 3L_1697206_SNP [dm6]	C	T	2.185e^-4	1	DOWNSTREAM CG12011 INTRON CG7991
3R	26011322	3R_26011322_SNP [dm3] 3R_30185600_SNP [dm6]	G	T	2.189e^-4	1	UTR_3_PRIME CG9747
2L	2678543	2L_2678543_SNP [dm3] 2L_2678543_SNP [dm6]	G	C	2.192e^-4	1	INTRON CG31690
3R	9793387	3R_9793387_SNP [dm3] 3R_13967665_SNP [dm6]	A	T	2.197e^-4	1	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	19343279	X_19343279_SNP [dm3] X_19449246_SNP [dm6]	G	C	2.198e^-4	1	INTRON kek5
3L	15019223	3L_15019223_SNP [dm3] 3L_15026123_SNP [dm6]	A	G	2.211e^-4	1	INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8796529	3L_8796529_SNP [dm3] 3L_8803429_SNP [dm6]	C	T	2.217e^-4	1	SYNONYMOUS_CODING CG34426 DOWNSTREAM CG32023
2L	4424756	2L_4424756_SNP [dm3] 2L_4424756_SNP [dm6]	C	A	2.224e^-4	1	INTRON CG15431
2L	20121867	2L_20121867_SNP [dm3] 2L_20121867_SNP [dm6]	C	T	2.225e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	16692402	X_16692402_SNP [dm3] X_16798369_SNP [dm6]	A	G	2.226e^-4	1	UTR_3_PRIME CG9132	TF binding site BDTNP1_TFBS_dl
3R	26678194	3R_26678194_SNP [dm3] 3R_30852472_SNP [dm6]	T	C	2.247e^-4	1	UTR_5_PRIME tll	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3093267	3R_3093267_SNP [dm3] 3R_7267545_SNP [dm6]	T	G	2.248e^-4	1	INTRON Syt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	4223968	2R_4223968_SNP [dm3] 2R_8336463_SNP [dm6]	T	G	2.250e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_Trl
2R	17331982	2R_17331982_SNP [dm3] 2R_21444477_SNP [dm6]	T	C	2.250e^-4	1	INTRON Sdc
X	9537990	X_9537990_SNP [dm3] X_9643957_SNP [dm6]	C	G	2.253e^-4	1	SPLICE_SITE_REGION l_1_G0232 SYNONYMOUS_CODING l_1_G0232 UTR_5_PRIME l_1_G0232	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21901344	X_21901344_SNP [dm3] X_22499508_SNP [dm6]	C	A	2.261e^-4	1	DOWNSTREAM l_1_G0196 INTRON l_1_G0196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8476424	2R_8476424_SNP [dm3] 2R_12588919_SNP [dm6]	C	A	2.262e^-4	1	UTR_5_PRIME Sin3A UPSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	18755160	3L_18755160_SNP [dm3] 3L_18762060_SNP [dm6]	A	C	2.263e^-4	1	INTRON ftz-f1
3R	17693774	3R_17693774_SNP [dm3] 3R_21868052_SNP [dm6]	T	G	2.292e^-4	1	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
2L	7209100	2L_7209100_SNP [dm3] 2L_7209100_SNP [dm6]	C	G	2.294e^-4	1	INTRON CG13784
2R	19144663	2R_19144663_SNP [dm3] 2R_23257140_SNP [dm6]	G	C	2.297e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	20513748	2R_20513748_SNP [dm3] 2R_24626225_SNP [dm6]	G	T	2.298e^-4	1	INTRON CG13594
3L	8625437	3L_8625437_SNP [dm3] 3L_8632337_SNP [dm6]	T	G	2.298e^-4	1	INTRON Zasp66 & 1 other
2L	12439969	2L_12439969_DEL [dm3] 2L_12439969_DEL [dm6]	CAAACAAC	C	2.301e^-4	1	UTR_3_PRIME Elf
2R	16726994	2R_16726994_SNP [dm3] 2R_20839489_SNP [dm6]	C	G	2.308e^-4	1	DOWNSTREAM CR44667 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	15121379	3R_15121379_INS [dm3] 3R_19295657_INS [dm6]	A	AATCTAAAAACAAATTTACT...	2.311e^-4	1	INTERGENIC
2R	17839777	2R_17839777_SNP [dm3] 2R_21952272_SNP [dm6]	C	T	2.313e^-4	1	SYNONYMOUS_CODING CG13488
3L	12231711	3L_12231711_SNP [dm3] 3L_12238611_SNP [dm6]	A	G	2.323e^-4	1	INTRON app
3L	12050996	3L_12050996_SNP [dm3] 3L_12057896_SNP [dm6]	T	C	2.370e^-4	1	INTRON rols
2R	4223969	2R_4223969_INS [dm3] 2R_8336464_INS [dm6]	T	TACGT	2.387e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_Trl
2R	16381674	2R_16381674_SNP [dm3] 2R_20494169_SNP [dm6]	G	C	2.388e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13098968	3L_13098968_SNP [dm3] 3L_13105868_SNP [dm6]	A	G	2.399e^-4	1	INTERGENIC
2R	4098934	2R_4098934_SNP [dm3] 2R_8211429_SNP [dm6]	G	T	2.411e^-4	1	INTRON LRP1	TF binding site mE1_TFBS_cad
2R	13897608	2R_13897608_SNP [dm3] 2R_18010103_SNP [dm6]	C	G	2.431e^-4	1	INTERGENIC
3R	21707456	3R_21707456_SNP [dm3] 3R_25881734_SNP [dm6]	C	A	2.431e^-4	1	UPSTREAM SppL & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2050816	2L_2050816_SNP [dm3] 2L_2050816_SNP [dm6]	G	A	2.435e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1697199	3L_1697199_SNP [dm3] 3L_1697199_SNP [dm6]	C	T	2.440e^-4	1	DOWNSTREAM CG12011 INTRON CG7991
3R	16877273	3R_16877273_SNP [dm3] 3R_21051551_SNP [dm6]	A	G	2.463e^-4	1	UTR_3_PRIME Mvl UPSTREAM CG17279 DOWNSTREAM Mvl
3L	15447158	3L_15447158_SNP [dm3] 3L_15454058_SNP [dm6]	T	C	2.464e^-4	1	INTERGENIC
2R	21099544	2R_21099544_SNP [dm3] 2R_25212021_SNP [dm6]	G	A	2.496e^-4	1	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	23379843	3R_23379843_SNP [dm3] 3R_27554121_SNP [dm6]	T	C	2.506e^-4	1	INTRON Klp98A
2R	17840094	2R_17840094_SNP [dm3] 2R_21952589_SNP [dm6]	A	T	2.509e^-4	1	DOWNSTREAM CG13488 INTERGENIC
3R	10415167	3R_10415167_SNP [dm3] 3R_14589445_SNP [dm6]	A	G	2.516e^-4	1	INTRON stumps	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16798106	X_16798106_SNP [dm3] X_16904073_SNP [dm6]	T	C	2.525e^-4	1	EXON CR44754
2R	11219686	2R_11219686_SNP [dm3] 2R_15332181_SNP [dm6]	C	G	2.535e^-4	1	UPSTREAM CR44371 INTRON Hr51
3R	9380418	3R_9380418_SNP [dm3] 3R_13554696_SNP [dm6]	T	A	2.539e^-4	1	INTERGENIC
3L	9845098	3L_9845098_SNP [dm3] 3L_9851998_SNP [dm6]	A	G	2.542e^-4	1	INTRON RasGAP1	TF binding site mE1_TFBS_cad
2L	13883661	2L_13883661_INS [dm3] 2L_13883661_INS [dm6]	G	GT	2.551e^-4	1	INTRON CenG1A
X	5076090	X_5076090_SNP [dm3] X_5182057_SNP [dm6]	G	A	2.552e^-4	1	SYNONYMOUS_CODING CG5062 INTRON rg & 1 other
3L	3558216	3L_3558216_SNP [dm3] 3L_3558216_SNP [dm6]	T	C	2.557e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sbb
3R	17516148	3R_17516148_INS [dm3] 3R_21690426_INS [dm6]	G	GG	2.557e^-4	1	INTRON CG31176	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8023974	3L_8023974_SNP [dm3] 3L_8030874_SNP [dm6]	T	C	2.563e^-4	1	INTRON nmo
3L	4069837	3L_4069837_SNP [dm3] 3L_4069837_SNP [dm6]	C	A	2.575e^-4	1	NON_SYNONYMOUS_CODING CG32259 INTRON wit
2L	19286705	2L_19286705_SNP [dm3] 2L_19286705_SNP [dm6]	A	G	2.581e^-4	1	INTERGENIC
3L	5139745	3L_5139745_SNP [dm3] 3L_5146645_SNP [dm6]	T	C	2.587e^-4	1	UPSTREAM CG10671 INTRON Aats-ala-m	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	9921396	2R_9921396_SNP [dm3] 2R_14033891_SNP [dm6]	A	G	2.595e^-4	1	INTRON mam
X	4291059	X_4291059_DEL [dm3] X_4397026_DEL [dm6]	TGAAACCAATTTCGCCATAT...	T	2.608e^-4	1	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4609467	2L_4609467_SNP [dm3] 2L_4609467_SNP [dm6]	C	G	2.616e^-4	1	INTRON dp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10666566	2R_10666566_SNP [dm3] 2R_14779061_SNP [dm6]	T	C	2.630e^-4	1	INTRON kn
2R	5083921	2R_5083921_DEL [dm3] 2R_9196416_DEL [dm6]	TT	T	2.633e^-4	1	INTRON unpg	TF binding site mE1_TFBS_cad
2R	9825719	2R_9825719_SNP [dm3] 2R_13938214_SNP [dm6]	C	G	2.633e^-4	1	INTRON shot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	630563	3L_630563_SNP [dm3] 3L_630563_SNP [dm6]	G	T	2.635e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2863255	2L_2863255_SNP [dm3] 2L_2863255_SNP [dm6]	G	T	2.657e^-4	1	INTRON CG2991	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	12203036	3L_12203036_SNP [dm3] 3L_12209936_SNP [dm6]	G	A	2.662e^-4	1	UTR_3_PRIME app INTRON app
2L	11667464	2L_11667464_SNP [dm3] 2L_11667464_SNP [dm6]	A	T	2.664e^-4	1	INTERGENIC
2R	13860263	2R_13860263_SNP [dm3] 2R_17972758_SNP [dm6]	G	A	2.672e^-4	1	INTERGENIC
2L	4462000	2L_4462000_SNP [dm3] 2L_4462000_SNP [dm6]	T	G	2.674e^-4	1	NON_SYNONYMOUS_CODING CG15443 DOWNSTREAM CG15435	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	18152978	2L_18152978_SNP [dm3] 2L_18152978_SNP [dm6]	G	A	2.678e^-4	1	UPSTREAM CG17681 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
3L	5360190	3L_5360190_SNP [dm3] 3L_5367090_SNP [dm6]	C	T	2.684e^-4	1	SYNONYMOUS_CODING Membrin UPSTREAM Uev1A DOWNSTREAM CG10635	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	9290417	2R_9290417_SNP [dm3] 2R_13402912_SNP [dm6]	C	T	2.687e^-4	1	INTERGENIC
X	3035065	X_3035065_SNP [dm3] X_3141032_SNP [dm6]	A	T	2.691e^-4	1	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	19946455	3L_19946455_SNP [dm3] 3L_19953355_SNP [dm6]	G	A	2.702e^-4	1	SYNONYMOUS_CODING CG42655 UPSTREAM CG33710 DOWNSTREAM CG42654 INTRON Ac76E
2L	13622121	2L_13622121_SNP [dm3] 2L_13622121_SNP [dm6]	C	T	2.710e^-4	1	INTRON kuz
3R	26864473	3R_26864473_DEL [dm3] 3R_31038751_DEL [dm6]	AA	A	2.714e^-4	1	UPSTREAM CanA1 INTERGENIC
3L	20495806	3L_20495806_SNP [dm3] 3L_20502706_SNP [dm6]	G	T	2.717e^-4	1	INTRON CG32425	transposable element FlyBase
2L	13622191	2L_13622191_DEL [dm3] 2L_13622191_DEL [dm6]	CTGCACAAAGATTCTCACTC...	C	2.721e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5360518	3L_5360518_SNP [dm3] 3L_5367418_SNP [dm6]	C	T	2.728e^-4	1	SYNONYMOUS_CODING CG10635 DOWNSTREAM Membrin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3L	5192224	3L_5192224_SNP [dm3] 3L_5199124_SNP [dm6]	T	G	2.744e^-4	1	INTRON shep
X	2223190	X_2223190_SNP [dm3] X_2329157_SNP [dm6]	G	C	2.753e^-4	1	DOWNSTREAM CG2854 INTRON phl
3R	15121385	3R_15121385_SNP [dm3] 3R_19295663_SNP [dm6]	A	T	2.761e^-4	1	INTERGENIC
3L	1495921	3L_1495921_SNP [dm3] 3L_1495921_SNP [dm6]	G	T	2.774e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl
3L	12235811	3L_12235811_SNP [dm3] 3L_12242711_SNP [dm6]	A	T	2.775e^-4	1	INTRON app
3L	12203215	3L_12203215_SNP [dm3] 3L_12210115_SNP [dm6]	T	A	2.783e^-4	1	UTR_3_PRIME app INTRON app
3R	4668100	3R_4668100_SNP [dm3] 3R_8842378_SNP [dm6]	T	C	2.795e^-4	1	INTRON pyd	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3131283	2L_3131283_SNP [dm3] 2L_3131283_SNP [dm6]	G	A	2.795e^-4	1	INTRON toc
2L	12667199	2L_12667199_SNP [dm3] 2L_12667199_SNP [dm6]	T	C	2.797e^-4	1	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8808668	2L_8808668_SNP [dm3] 2L_8808668_SNP [dm6]	C	A	2.798e^-4	1	INTERGENIC
3R	12174810	3R_12174810_SNP [dm3] 3R_16349088_SNP [dm6]	A	T	2.804e^-4	1	UTR_5_PRIME CG14879 UPSTREAM Manf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	9290456	2R_9290456_SNP [dm3] 2R_13402951_SNP [dm6]	G	T	2.807e^-4	1	INTERGENIC
2L	15371097	2L_15371097_SNP [dm3] 2L_15371097_SNP [dm6]	T	A	2.811e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10501225	X_10501225_SNP [dm3] X_10607192_SNP [dm6]	C	T	2.812e^-4	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	18995012	2R_18995012_SNP [dm3] 2R_23107489_SNP [dm6]	T	C	2.820e^-4	1	INTERGENIC
3L	5192539	3L_5192539_SNP [dm3] 3L_5199439_SNP [dm6]	G	A	2.823e^-4	1	INTRON shep
X	16010151	X_16010151_DEL [dm3] X_16116118_DEL [dm6]	TC	T	2.838e^-4	1	INTERGENIC
3L	630568	3L_630568_SNP [dm3] 3L_630568_SNP [dm6]	C	A	2.856e^-4	1	EXON CR43334	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	12532782	2R_12532782_SNP [dm3] 2R_16645277_SNP [dm6]	T	C	2.856e^-4	1	INTRON gprs	TF binding site mE1_TFBS_cad
3R	1003937	3R_1003937_SNP [dm3] 3R_5178215_SNP [dm6]	T	C	2.858e^-4	1	DOWNSTREAM cno INTRON cno
3R	14143900	3R_14143900_SNP [dm3] 3R_18318178_SNP [dm6]	G	A	2.860e^-4	1	INTRON CG31235
3R	5943854	3R_5943854_SNP [dm3] 3R_10118132_SNP [dm6]	A	G	2.868e^-4	1	INTRON CG3940
2L	15371090	2L_15371090_INS [dm3] 2L_15371090_INS [dm6]	A	AA	2.880e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	12199722	2R_12199722_SNP [dm3] 2R_16312217_SNP [dm6]	G	T	2.884e^-4	1	INTRON Nox
3R	17895420	3R_17895420_SNP [dm3] 3R_22069698_SNP [dm6]	T	C	2.904e^-4	1	INTRON how	TF binding site BDTNP1_TFBS_prd
2R	19851230	2R_19851230_SNP [dm3] 2R_23963707_SNP [dm6]	G	A	2.914e^-4	1	SYNONYMOUS_CODING Fmo-1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	13359369	2L_13359369_SNP [dm3] 2L_13359369_SNP [dm6]	C	A	2.915e^-4	1	DOWNSTREAM CG9377 INTERGENIC
3L	18358120	3L_18358120_SNP [dm3] 3L_18365020_SNP [dm6]	A	C	2.945e^-4	1	INTERGENIC
3R	5286843	3R_5286843_SNP [dm3] 3R_9461121_SNP [dm6]	T	G	2.946e^-4	1	UTR_3_PRIME CG16779 UPSTREAM GstZ2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	20510369	2R_20510369_SNP [dm3] 2R_24622846_SNP [dm6]	T	A	2.950e^-4	1	INTRON CG13594	TF binding site mE1_TFBS_chinmo
3L	8605063	3L_8605063_SNP [dm3] 3L_8611963_SNP [dm6]	T	C	2.964e^-4	1	INTRON CG6282
3L	12235697	3L_12235697_SNP [dm3] 3L_12242597_SNP [dm6]	A	C	2.970e^-4	1	INTRON app
2L	19452777	2L_19452777_SNP [dm3] 2L_19452777_SNP [dm6]	A	G	2.975e^-4	1	UTR_5_PRIME Top2 INTRON Top2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1373706	3L_1373706_SNP [dm3] 3L_1373706_SNP [dm6]	C	T	2.981e^-4	1	INTRON Ptp61F & 1 other
2R	17721025	2R_17721025_SNP [dm3] 2R_21833520_SNP [dm6]	A	G	2.983e^-4	1	UTR_5_PRIME CG34040 DOWNSTREAM CG4363
2R	17839804	2R_17839804_SNP [dm3] 2R_21952299_SNP [dm6]	T	A	2.983e^-4	1	SYNONYMOUS_CODING CG13488
3R	17647046	3R_17647046_SNP [dm3] 3R_21821324_SNP [dm6]	T	G	2.987e^-4	1	INTRON CASK	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17187431	3L_17187431_SNP [dm3] 3L_17194331_SNP [dm6]	A	G	2.987e^-4	1	INTRON Rbp6
3L	20539010	3L_20539010_SNP [dm3] 3L_20545910_SNP [dm6]	A	C	2.993e^-4	1	INTERGENIC
2R	4477480	2R_4477480_SNP [dm3] 2R_8589975_SNP [dm6]	G	C	2.997e^-4	1	UPSTREAM CG14752 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1496087	3L_1496087_SNP [dm3] 3L_1496087_SNP [dm6]	G	A	3.011e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	26328124	3R_26328124_SNP [dm3] 3R_30502402_SNP [dm6]	T	C	3.012e^-4	1	SYNONYMOUS_CODING CG31371
3R	24212126	3R_24212126_SNP [dm3] 3R_28386404_SNP [dm6]	C	T	3.020e^-4	1	INTERGENIC
3L	3558293	3L_3558293_DEL [dm3] 3L_3558293_DEL [dm6]	AATAAGGAC	A	3.022e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	5328688	2L_5328688_SNP [dm3] 2L_5328688_SNP [dm6]	T	C	3.029e^-4	1	START_GAINED CG14022 UTR_5_PRIME CG14022 DOWNSTREAM cype
3L	8023640	3L_8023640_SNP [dm3] 3L_8030540_SNP [dm6]	T	G	3.034e^-4	1	INTRON nmo
2L	20116120	2L_20116120_SNP [dm3] 2L_20116120_SNP [dm6]	C	T	3.047e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12440014	2L_12440014_DEL [dm3] 2L_12440014_DEL [dm6]	GAAG	G	3.047e^-4	1	UTR_3_PRIME Elf
3L	5192484	3L_5192484_SNP [dm3] 3L_5199384_SNP [dm6]	A	C	3.055e^-4	1	INTRON shep
2R	19157468	2R_19157468_SNP [dm3] 2R_23269945_SNP [dm6]	A	C	3.059e^-4	1	UPSTREAM CG13540 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18395964	3R_18395964_SNP [dm3] 3R_22570242_SNP [dm6]	G	C	3.060e^-4	1	UTR_5_PRIME CG33110
3L	4982564	3L_4982564_SNP [dm3] 3L_4982564_SNP [dm6]	T	C	3.064e^-4	1	DOWNSTREAM CR45685 INTRON Con	TF binding site mE1_TFBS_HSA
2L	9411309	2L_9411309_SNP [dm3] 2L_9411309_SNP [dm6]	G	A	3.089e^-4	1	INTRON Shawl
2L	10791423	2L_10791423_SNP [dm3] 2L_10791423_SNP [dm6]	G	C	3.094e^-4	1	UTR_3_PRIME CG31870 DOWNSTREAM CG31870 INTRON CG31869
2R	17839486	2R_17839486_SNP [dm3] 2R_21951981_SNP [dm6]	T	C	3.107e^-4	1	SYNONYMOUS_CODING CG13488
2R	16089900	2R_16089900_SNP [dm3] 2R_20202395_SNP [dm6]	G	A	3.108e^-4	1	INTERGENIC
3R	26542499	3R_26542499_DEL [dm3] 3R_30716777_DEL [dm6]	GATAG	G	3.110e^-4	1	INTERGENIC
2L	672959	2L_672959_SNP [dm3] 2L_672959_SNP [dm6]	A	G	3.117e^-4	1	INTRON ds
2L	16007792	2L_16007792_SNP [dm3] 2L_16007792_SNP [dm6]	G	A	3.118e^-4	1	INTRON beat-Ic	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4573725	2L_4573725_SNP [dm3] 2L_4573725_SNP [dm6]	G	T	3.120e^-4	1	INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3R	23405218	3R_23405218_SNP [dm3] 3R_27579496_SNP [dm6]	G	T	3.123e^-4	1	INTRON wdb	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
X	19617455	X_19617455_SNP [dm3] X_19723422_SNP [dm6]	C	G	3.131e^-4	1	SPLICE_SITE_REGION CG12531 INTRON CG12531
2L	13084299	2L_13084299_SNP [dm3] 2L_13084299_SNP [dm6]	T	G	3.137e^-4	1	INTERGENIC
2L	16063598	2L_16063598_SNP [dm3] 2L_16063598_SNP [dm6]	G	T	3.137e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	11781918	3L_11781918_SNP [dm3] 3L_11788818_SNP [dm6]	A	T	3.143e^-4	1	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11782042	3L_11782042_SNP [dm3] 3L_11788942_SNP [dm6]	C	A	3.143e^-4	1	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	4223959	2R_4223959_SNP [dm3] 2R_8336454_SNP [dm6]	T	C	3.151e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_Trl
2R	7754962	2R_7754962_SNP [dm3] 2R_11867457_SNP [dm6]	A	T	3.154e^-4	1	SPLICE_SITE_ACCEPTOR CR42532 DOWNSTREAM CG13185 INTRON CR42532
2L	19876498	2L_19876498_SNP [dm3] 2L_19876498_SNP [dm6]	C	T	3.161e^-4	1	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10826290	3R_10826290_SNP [dm3] 3R_15000568_SNP [dm6]	T	C	3.167e^-4	1	INTERGENIC
2L	2839667	2L_2839667_SNP [dm3] 2L_2839667_SNP [dm6]	C	G	3.171e^-4	1	UPSTREAM CG2975 DOWNSTREAM CR45342 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	12236396	3L_12236396_SNP [dm3] 3L_12243296_SNP [dm6]	C	T	3.179e^-4	1	INTRON app
2R	18207201	2R_18207201_SNP [dm3] 2R_22319696_SNP [dm6]	C	T	3.181e^-4	1	INTRON Gp150 EXON CR44756	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	994521	3R_994521_SNP [dm3] 3R_5168799_SNP [dm6]	A	C	3.184e^-4	1	INTRON dpr16	transposable element FlyBase
3R	5963026	3R_5963026_SNP [dm3] 3R_10137304_SNP [dm6]	A	C	3.188e^-4	1	INTRON tws
3R	18524444	3R_18524444_SNP [dm3] 3R_22698722_SNP [dm6]	A	G	3.207e^-4	1	SYNONYMOUS_CODING Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20403204	2L_20403204_SNP [dm3] 2L_20403204_SNP [dm6]	G	A	3.212e^-4	1	INTRON CG10947
X	5327312	X_5327312_DEL [dm3] X_5433279_DEL [dm6]	AGTGGGAACA	A	3.217e^-4	1	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	11563993	X_11563993_SNP [dm3] X_11669960_SNP [dm6]	A	C	3.237e^-4	1	INTRON Ptp10D
2R	17583058	2R_17583058_SNP [dm3] 2R_21695553_SNP [dm6]	G	A	3.240e^-4	1	SYNONYMOUS_CODING CngB	TF binding site mE1_TFBS_cad
2L	3821084	2L_3821084_SNP [dm3] 2L_3821084_SNP [dm6]	G	A	3.240e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3L	7620273	3L_7620273_SNP [dm3] 3L_7627173_SNP [dm6]	A	C	3.248e^-4	1	INTRON CG33275
2L	2504773	2L_2504773_SNP [dm3] 2L_2504773_SNP [dm6]	G	C	3.251e^-4	1	INTERGENIC
3R	9384908	3R_9384908_SNP [dm3] 3R_13559186_SNP [dm6]	C	A	3.264e^-4	1	INTERGENIC
3L	14331437	3L_14331437_SNP [dm3] 3L_14338337_SNP [dm6]	T	C	3.264e^-4	1	INTRON fz	TF binding site BDTNP1_TFBS_dl
2L	12667205	2L_12667205_SNP [dm3] 2L_12667205_SNP [dm6]	A	G	3.274e^-4	1	DOWNSTREAM CG15485 INTRON pdm2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	7762999	3R_7762999_SNP [dm3] 3R_11937277_SNP [dm6]	C	A	3.284e^-4	1	INTRON Cad87A
3R	19655274	3R_19655274_SNP [dm3] 3R_23829552_SNP [dm6]	A	T	3.293e^-4	1	INTRON CG34355
3L	10528661	3L_10528661_SNP [dm3] 3L_10535561_SNP [dm6]	C	T	3.304e^-4	1	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
2R	17564406	2R_17564406_SNP [dm3] 2R_21676901_SNP [dm6]	A	C	3.325e^-4	1	SYNONYMOUS_CODING CG30263	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13825871	2R_13825871_SNP [dm3] 2R_17938366_SNP [dm6]	A	T	3.368e^-4	1	INTERGENIC
2L	15578994	2L_15578994_SNP [dm3] 2L_15578994_SNP [dm6]	A	T	3.378e^-4	1	SYNONYMOUS_CODING kek3	TF binding site mE1_TFBS_chinmo
2R	9381136	2R_9381136_SNP [dm3] 2R_13493631_SNP [dm6]	A	G	3.378e^-4	1	INTRON bbc
2R	9638633	2R_9638633_SNP [dm3] 2R_13751128_SNP [dm6]	A	G	3.385e^-4	1	INTERGENIC
2L	16063623	2L_16063623_SNP [dm3] 2L_16063623_SNP [dm6]	A	C	3.385e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3R	12934982	3R_12934982_SNP [dm3] 3R_17109260_SNP [dm6]	C	T	3.390e^-4	1	INTRON cher
3L	12255953	3L_12255953_SNP [dm3] 3L_12262853_SNP [dm6]	C	G	3.395e^-4	1	INTRON app
2L	17922277	2L_17922277_SNP [dm3] 2L_17922277_SNP [dm6]	A	T	3.398e^-4	1	INTERGENIC
2L	15746092	2L_15746092_SNP [dm3] 2L_15746092_SNP [dm6]	A	C	3.403e^-4	1	UPSTREAM CR44974 INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
X	5336607	X_5336607_SNP [dm3] X_5442574_SNP [dm6]	C	T	3.404e^-4	1	INTERGENIC
2L	8914935	2L_8914935_SNP [dm3] 2L_8914935_SNP [dm6]	T	A	3.408e^-4	1	INTRON CG34398
3L	12229815	3L_12229815_SNP [dm3] 3L_12236715_SNP [dm6]	A	C	3.408e^-4	1	INTRON app	transposable element FlyBase
2R	13084934	2R_13084934_SNP [dm3] 2R_17197429_SNP [dm6]	C	G	3.414e^-4	1	DOWNSTREAM CG10950 INTERGENIC
3L	7620333	3L_7620333_SNP [dm3] 3L_7627233_SNP [dm6]	C	A	3.414e^-4	1	INTRON CG33275
2L	18161528	2L_18161528_SNP [dm3] 2L_18161528_SNP [dm6]	C	A	3.427e^-4	1	SYNONYMOUS_CODING CG42750
2R	13043853	2R_13043853_INS [dm3] 2R_17156348_INS [dm6]	G	GGACTCAGACCTCAG...	3.434e^-4	1	UTR_3_PRIME CG17290 DOWNSTREAM CG17287
3L	2810106	3L_2810106_SNP [dm3] 3L_2810106_SNP [dm6]	G	T	3.446e^-4	1	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	4476274	2R_4476274_SNP [dm3] 2R_8588769_SNP [dm6]	T	C	3.449e^-4	1	INTERGENIC
3R	24212229	3R_24212229_SNP [dm3] 3R_28386507_SNP [dm6]	C	T	3.449e^-4	1	INTERGENIC
3R	26079189	3R_26079189_SNP [dm3] 3R_30253467_SNP [dm6]	T	C	3.458e^-4	1	DOWNSTREAM CG9682 INTRON CG18404
2R	17956160	2R_17956160_SNP [dm3] 2R_22068655_SNP [dm6]	A	C	3.481e^-4	1	SYNONYMOUS_CODING Snp DOWNSTREAM CG44249
2R	19636117	2R_19636117_SNP [dm3] 2R_23748594_SNP [dm6]	A	T	3.482e^-4	1	DOWNSTREAM CG13560 & 1 other INTERGENIC
3L	22814171	3L_22814171_SNP [dm3] 3L_22821071_SNP [dm6]	C	T	3.487e^-4	1	INTRON jim
3R	23630129	3R_23630129_SNP [dm3] 3R_27804407_SNP [dm6]	C	T	3.490e^-4	1	SYNONYMOUS_CODING CG34353
3R	21073544	3R_21073544_SNP [dm3] 3R_25247822_SNP [dm6]	C	A	3.498e^-4	1	UPSTREAM Nup37 & 1 other INTRON Nup37	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	19855030	2L_19855030_SNP [dm3] 2L_19855030_SNP [dm6]	C	A	3.501e^-4	1	INTRON sick
3L	12813580	3L_12813580_SNP [dm3] 3L_12820480_SNP [dm6]	A	T	3.506e^-4	1	NON_SYNONYMOUS_CODING CG42588
2L	2072512	2L_2072512_SNP [dm3] 2L_2072512_SNP [dm6]	C	G	3.507e^-4	1	INTRON dpr3	TF binding site mE1_TFBS_chinmo
X	2030897	X_2030897_SNP [dm3] X_2136864_SNP [dm6]	A	C	3.509e^-4	1	UPSTREAM ph-p INTRON ph-p	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	11781916	3L_11781916_SNP [dm3] 3L_11788816_SNP [dm6]	A	C	3.514e^-4	1	INTRON Pi3K68D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23411639	3R_23411639_SNP [dm3] 3R_27585917_SNP [dm6]	T	A	3.517e^-4	1	UTR_3_PRIME raps DOWNSTREAM CG5639
3R	23411642	3R_23411642_SNP [dm3] 3R_27585920_SNP [dm6]	G	C	3.517e^-4	1	UTR_3_PRIME raps DOWNSTREAM CG5639
3L	17485970	3L_17485970_SNP [dm3] 3L_17492870_SNP [dm6]	A	C	3.521e^-4	1	INTRON Oatp74D
2R	16916259	2R_16916259_SNP [dm3] 2R_21028754_SNP [dm6]	G	A	3.522e^-4	1	DOWNSTREAM CR45148 INTERGENIC
3R	10255986	3R_10255986_SNP [dm3] 3R_14430264_SNP [dm6]	C	T	3.535e^-4	1	INTRON cv-c
3R	4723234	3R_4723234_SNP [dm3] 3R_8897512_SNP [dm6]	G	A	3.538e^-4	1	INTRON pyd
2L	15110646	2L_15110646_SNP [dm3] 2L_15110646_SNP [dm6]	A	C	3.546e^-4	1	INTRON CG15269	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	20645260	X_20645260_SNP [dm3] X_20774233_SNP [dm6]	A	G	3.547e^-4	1	INTRON shakB
X	16010240	X_16010240_SNP [dm3] X_16116207_SNP [dm6]	T	A	3.557e^-4	1	INTERGENIC
3R	24916423	3R_24916423_SNP [dm3] 3R_29090701_SNP [dm6]	C	T	3.559e^-4	1	INTRON CG11873	TF binding site mE1_TFBS_HSA
3L	12836013	3L_12836013_SNP [dm3] 3L_12842913_SNP [dm6]	T	A	3.568e^-4	1	UTR_5_PRIME CG10960	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	12723854	2L_12723854_SNP [dm3] 2L_12723854_SNP [dm6]	A	G	3.578e^-4	1	SYNONYMOUS_CODING MRP	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_sens
2L	20115807	2L_20115807_SNP [dm3] 2L_20115807_SNP [dm6]	A	G	3.579e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	10104097	2L_10104097_SNP [dm3] 2L_10104097_SNP [dm6]	G	C	3.580e^-4	1	INTRON CG44153 & 1 other
X	11786492	X_11786492_SNP [dm3] X_11892459_SNP [dm6]	C	T	3.584e^-4	1	INTRON sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	13260810	3L_13260810_SNP [dm3] 3L_13267710_SNP [dm6]	A	G	3.592e^-4	1	INTRON caps	TF binding site mE1_TFBS_HSA
2L	1929929	2L_1929929_SNP [dm3] 2L_1929929_SNP [dm6]	G	T	3.595e^-4	1	INTRON CG7337
2L	5230411	2L_5230411_SNP [dm3] 2L_5230411_SNP [dm6]	G	A	3.612e^-4	1	INTRON tkv
X	3031051	X_3031051_SNP [dm3] X_3137018_SNP [dm6]	C	T	3.613e^-4	1	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	9642435	3R_9642435_SNP [dm3] 3R_13816713_SNP [dm6]	C	A	3.624e^-4	1	DOWNSTREAM CR43641 EXON CR43642	TF binding site mE1_TFBS_HSA
3L	7620345	3L_7620345_SNP [dm3] 3L_7627245_SNP [dm6]	A	T	3.631e^-4	1	INTRON CG33275
3R	23405031	3R_23405031_DEL [dm3] 3R_27579309_DEL [dm6]	AATCGCTGAAAATTTAA...	A	3.635e^-4	1	INTRON wdb
3R	19050273	3R_19050273_SNP [dm3] 3R_23224551_SNP [dm6]	T	G	3.635e^-4	1	INTRON cnc
2L	16063710	2L_16063710_SNP [dm3] 2L_16063710_SNP [dm6]	A	G	3.642e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
2R	16566471	2R_16566471_SNP [dm3] 2R_20678966_SNP [dm6]	C	T	3.654e^-4	1	INTERGENIC
3R	16047614	3R_16047614_SNP [dm3] 3R_20221892_SNP [dm6]	T	C	3.655e^-4	1	INTRON Nlg4
3R	16877262	3R_16877262_SNP [dm3] 3R_21051540_SNP [dm6]	A	C	3.667e^-4	1	UTR_3_PRIME Mvl UPSTREAM CG17279 DOWNSTREAM Mvl
3L	1373719	3L_1373719_SNP [dm3] 3L_1373719_SNP [dm6]	G	A	3.680e^-4	1	INTRON Ptp61F & 1 other
X	13368305	X_13368305_SNP [dm3] X_13474272_SNP [dm6]	G	A	3.691e^-4	1	INTRON Neto
2L	8179360	2L_8179360_SNP [dm3] 2L_8179360_SNP [dm6]	C	A	3.695e^-4	1	SYNONYMOUS_CODING Piezo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	8940109	X_8940109_SNP [dm3] X_9046076_SNP [dm6]	A	G	3.721e^-4	1	INTRON CR43836 & 1 other
X	5336231	X_5336231_SNP [dm3] X_5442198_SNP [dm6]	C	T	3.724e^-4	1	INTERGENIC
2R	4111112	2R_4111112_SNP [dm3] 2R_8223607_SNP [dm6]	C	G	3.730e^-4	1	SPLICE_SITE_REGION LRP1 INTRON LRP1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26021430	3R_26021430_SNP [dm3] 3R_30195708_SNP [dm6]	C	T	3.740e^-4	1	DOWNSTREAM CG9743 INTRON CG15531
3R	3093210	3R_3093210_DEL [dm3] 3R_7267488_DEL [dm6]	TAAC	GCT	3.750e^-4	1	INTRON Syt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8743678	3L_8743678_INS [dm3] 3L_8750578_INS [dm6]	A	AG	3.752e^-4	1	UPSTREAM CG13306 DOWNSTREAM CR44527 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	5787705	2L_5787705_SNP [dm3] 2L_5787705_SNP [dm6]	C	G	3.785e^-4	1	INTRON CG9171
2R	9692816	2R_9692816_SNP [dm3] 2R_13805311_SNP [dm6]	A	C	3.797e^-4	1	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	9518044	3L_9518044_SNP [dm3] 3L_9524944_SNP [dm6]	A	G	3.808e^-4	1	INTRON CG33700
2R	18152109	2R_18152109_SNP [dm3] 2R_22264604_SNP [dm6]	G	A	3.819e^-4	1	INTRON dve
3R	23411640	3R_23411640_SNP [dm3] 3R_27585918_SNP [dm6]	G	T	3.825e^-4	1	UTR_3_PRIME raps DOWNSTREAM CG5639
3R	8984859	3R_8984859_SNP [dm3] 3R_13159137_SNP [dm6]	A	T	3.826e^-4	1	INTRON timeout
X	8378939	X_8378939_SNP [dm3] X_8484906_SNP [dm6]	T	C	3.865e^-4	1	DOWNSTREAM otu & 1 other INTERGENIC
3R	26079465	3R_26079465_SNP [dm3] 3R_30253743_SNP [dm6]	A	T	3.869e^-4	1	DOWNSTREAM CG9682 INTRON CG18404
3R	24027117	3R_24027117_SNP [dm3] 3R_28201395_SNP [dm6]	T	G	3.871e^-4	1	INTRON CG34354
3L	8625419	3L_8625419_SNP [dm3] 3L_8632319_SNP [dm6]	G	T	3.874e^-4	1	INTRON Zasp66 & 1 other
3L	8625439	3L_8625439_SNP [dm3] 3L_8632339_SNP [dm6]	C	G	3.874e^-4	1	INTRON Zasp66 & 1 other
2L	14884834	2L_14884834_SNP [dm3] 2L_14884834_SNP [dm6]	C	A	3.876e^-4	1	UPSTREAM CR45302 INTERGENIC
2R	12486775	2R_12486775_SNP [dm3] 2R_16599270_SNP [dm6]	C	G	3.877e^-4	1	SYNONYMOUS_CODING CG5089 INTRON CG8303
3R	26644336	3R_26644336_SNP [dm3] 3R_30818614_SNP [dm6]	G	A	3.894e^-4	1	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20514579	2R_20514579_SNP [dm3] 2R_24627056_SNP [dm6]	C	T	3.894e^-4	1	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6592570	2R_6592570_SNP [dm3] 2R_10705065_SNP [dm6]	C	A	3.912e^-4	1	UPSTREAM stan INTRON stan
X	5214770	X_5214770_SNP [dm3] X_5320737_SNP [dm6]	G	A	3.914e^-4	1	SYNONYMOUS_CODING Rnp4F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	1496069	3L_1496069_INS [dm3] 3L_1496069_INS [dm6]	A	ACATACATGCATGTATCAGC...	3.917e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	2496907	2R_2496907_SNP [dm3] 2R_6609402_SNP [dm6]	C	G	3.924e^-4	1	INTRON jing	transposable element FlyBase
3L	9922376	3L_9922376_SNP [dm3] 3L_9929276_SNP [dm6]	A	G	3.925e^-4	1	INTRON CG34356
2R	4155474	2R_4155474_SNP [dm3] 2R_8267969_SNP [dm6]	A	G	3.931e^-4	1	SYNONYMOUS_CODING CG30371 UPSTREAM CG30375	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10883642	3R_10883642_SNP [dm3] 3R_15057920_SNP [dm6]	A	G	3.958e^-4	1	INTRON dpr9
3R	24413337	3R_24413337_SNP [dm3] 3R_28587615_SNP [dm6]	A	T	3.964e^-4	1	EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7620358	3L_7620358_SNP [dm3] 3L_7627258_SNP [dm6]	A	C	3.965e^-4	1	INTRON CG33275
3L	15703464	3L_15703464_SNP [dm3] 3L_15710364_SNP [dm6]	C	A	3.975e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12229804	3L_12229804_SNP [dm3] 3L_12236704_SNP [dm6]	A	T	3.982e^-4	1	INTRON app	transposable element FlyBase
3R	24818382	3R_24818382_SNP [dm3] 3R_28992660_SNP [dm6]	G	A	4.018e^-4	1	DOWNSTREAM wat INTERGENIC
3R	25921443	3R_25921443_SNP [dm3] 3R_30095721_SNP [dm6]	C	T	4.019e^-4	1	INTRON sima
2R	4451520	2R_4451520_SNP [dm3] 2R_8564015_SNP [dm6]	T	G	4.025e^-4	1	DOWNSTREAM Cyp6a14 INTERGENIC
2R	19137924	2R_19137924_SNP [dm3] 2R_23250401_SNP [dm6]	C	A	4.061e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	8232116	2L_8232116_SNP [dm3] 2L_8232116_SNP [dm6]	G	T	4.075e^-4	1	INTRON Pvr
3R	26677797	3R_26677797_SNP [dm3] 3R_30852075_SNP [dm6]	C	A	4.077e^-4	1	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2L	12306492	2L_12306492_SNP [dm3] 2L_12306492_SNP [dm6]	G	C	4.088e^-4	1	INTRON aret
3R	19735340	3R_19735340_SNP [dm3] 3R_23909618_SNP [dm6]	T	C	4.101e^-4	1	INTRON sba
3R	23411643	3R_23411643_SNP [dm3] 3R_27585921_SNP [dm6]	T	A	4.103e^-4	1	UTR_3_PRIME raps DOWNSTREAM CG5639
X	16558087	X_16558087_SNP [dm3] X_16664054_SNP [dm6]	T	C	4.116e^-4	1	SYNONYMOUS_CODING CG15865 INTRON r	TF binding site mE1_TFBS_chinmo
3R	4748035	3R_4748035_INS [dm3] 3R_8922313_INS [dm6]	T	TT	4.125e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20868358	3L_20868358_DEL [dm3] 3L_20875258_DEL [dm6]	TT	T	4.131e^-4	1	INTRON CG32432
3L	8625413	3L_8625413_SNP [dm3] 3L_8632313_SNP [dm6]	A	C	4.136e^-4	1	INTRON Zasp66 & 1 other
3R	24030822	3R_24030822_DEL [dm3] 3R_28205100_DEL [dm6]	AA	T	4.143e^-4	1	INTRON CG34354
3L	12836357	3L_12836357_SNP [dm3] 3L_12843257_SNP [dm6]	A	G	4.143e^-4	1	UPSTREAM CG10960 DOWNSTREAM CG10948 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	17854227	2R_17854227_SNP [dm3] 2R_21966722_SNP [dm6]	A	T	4.148e^-4	1	INTRON ppk9
2R	9375551	2R_9375551_SNP [dm3] 2R_13488046_SNP [dm6]	G	T	4.149e^-4	1	SYNONYMOUS_CODING bbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20440363	3R_20440363_SNP [dm3] 3R_24614641_SNP [dm6]	G	T	4.165e^-4	1	INTRON mld
3R	14539218	3R_14539218_SNP [dm3] 3R_18713496_SNP [dm6]	G	A	4.170e^-4	1	SYNONYMOUS_CODING VAChT INTRON Cha	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4224092	2R_4224092_SNP [dm3] 2R_8336587_SNP [dm6]	G	T	4.174e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20520113	2R_20520113_SNP [dm3] 2R_24632590_SNP [dm6]	C	T	4.184e^-4	1	SYNONYMOUS_CODING Cyp9c1 INTRON CG13594 EXON CR43787	TF binding site mE1_TFBS_cad
3L	7620344	3L_7620344_SNP [dm3] 3L_7627244_SNP [dm6]	T	C	4.190e^-4	1	INTRON CG33275
3R	17305737	3R_17305737_SNP [dm3] 3R_21480015_SNP [dm6]	A	C	4.192e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17839827	2R_17839827_SNP [dm3] 2R_21952322_SNP [dm6]	G	A	4.193e^-4	1	NON_SYNONYMOUS_CODING CG13488
3L	6876508	3L_6876508_SNP [dm3] 3L_6883408_SNP [dm6]	C	T	4.198e^-4	1	EXON CR45416
3L	4738937	3L_4738937_SNP [dm3] 3L_4738937_SNP [dm6]	T	C	4.207e^-4	1	INTRON RhoGEF64C
3L	11024476	3L_11024476_SNP [dm3] 3L_11031376_SNP [dm6]	T	A	4.219e^-4	1	INTERGENIC
2R	19138914	2R_19138914_SNP [dm3] 2R_23251391_SNP [dm6]	C	G	4.220e^-4	1	INTERGENIC
3R	20440366	3R_20440366_SNP [dm3] 3R_24614644_SNP [dm6]	G	T	4.224e^-4	1	INTRON mld
3L	2985986	3L_2985986_SNP [dm3] 3L_2985986_SNP [dm6]	C	T	4.230e^-4	1	INTERGENIC
2R	19138696	2R_19138696_SNP [dm3] 2R_23251173_SNP [dm6]	A	T	4.245e^-4	1	INTERGENIC
3R	5963027	3R_5963027_SNP [dm3] 3R_10137305_SNP [dm6]	A	C	4.254e^-4	1	INTRON tws
3R	15226755	3R_15226755_SNP [dm3] 3R_19401033_SNP [dm6]	G	T	4.258e^-4	1	SYNONYMOUS_CODING Ino80	TF binding site mE1_TFBS_sens
2R	18994938	2R_18994938_DEL [dm3] 2R_23107415_DEL [dm6]	GAATGAAATTAAG...	G	4.264e^-4	1	INTERGENIC
3L	6507382	3L_6507382_SNP [dm3] 3L_6514282_SNP [dm6]	A	T	4.266e^-4	1	INTRON sfl
3L	1909764	3L_1909764_SNP [dm3] 3L_1909764_SNP [dm6]	T	C	4.271e^-4	1	INTRON CG1887
3L	12231756	3L_12231756_SNP [dm3] 3L_12238656_SNP [dm6]	T	C	4.289e^-4	1	INTRON app
3L	12547617	3L_12547617_SNP [dm3] 3L_12554517_SNP [dm6]	T	C	4.291e^-4	1	INTRON sowah
X	5022419	X_5022419_SNP [dm3] X_5128386_SNP [dm6]	A	G	4.345e^-4	1	INTRON rg & 1 other
3L	11630940	3L_11630940_SNP [dm3] 3L_11637840_SNP [dm6]	G	A	4.357e^-4	1	INTRON CG32091
2L	14103706	2L_14103706_SNP [dm3] 2L_14103706_SNP [dm6]	A	C	4.357e^-4	1	UPSTREAM CG16879 INTERGENIC
3R	17059292	3R_17059292_SNP [dm3] 3R_21233570_SNP [dm6]	G	T	4.360e^-4	1	INTRON e	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19439721	3R_19439721_SNP [dm3] 3R_23613999_SNP [dm6]	C	A	4.364e^-4	1	INTRON CG31145
X	12942322	X_12942322_SNP [dm3] X_13048289_SNP [dm6]	A	C	4.365e^-4	1	INTRON rad
3R	24582240	3R_24582240_SNP [dm3] 3R_28756518_SNP [dm6]	T	A	4.368e^-4	1	NON_SYNONYMOUS_CODING CG9997 DOWNSTREAM aqrs	TF binding site BDTNP1_TFBS_bcd
2L	7208670	2L_7208670_SNP [dm3] 2L_7208670_SNP [dm6]	T	A	4.370e^-4	1	INTRON CG13784
3L	8153438	3L_8153438_SNP [dm3] 3L_8160338_SNP [dm6]	T	G	4.376e^-4	1	UTR_3_PRIME CG13675 UPSTREAM CG43886
2R	12342782	2R_12342782_DEL [dm3] 2R_16455277_DEL [dm6]	TATGGTTAT	T	4.388e^-4	1	INTERGENIC
2L	16063632	2L_16063632_SNP [dm3] 2L_16063632_SNP [dm6]	A	G	4.389e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3L	8259584	3L_8259584_SNP [dm3] 3L_8266484_SNP [dm6]	A	G	4.398e^-4	1	INTRON Dscam4
3R	6823768	3R_6823768_SNP [dm3] 3R_10998046_SNP [dm6]	C	G	4.405e^-4	1	INTRON CG34114
3L	9305828	3L_9305828_SNP [dm3] 3L_9312728_SNP [dm6]	G	A	4.420e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14374799	2R_14374799_SNP [dm3] 2R_18487294_SNP [dm6]	T	G	4.429e^-4	1	INTRON CG30116
2L	15759067	2L_15759067_SNP [dm3] 2L_15759067_SNP [dm6]	T	C	4.434e^-4	1	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14188033	3L_14188033_SNP [dm3] 3L_14194933_SNP [dm6]	C	T	4.455e^-4	1	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23404979	3R_23404979_SNP [dm3] 3R_27579257_SNP [dm6]	A	G	4.457e^-4	1	INTRON wdb
2R	6188106	2R_6188106_SNP [dm3] 2R_10300601_SNP [dm6]	G	T	4.457e^-4	1	UPSTREAM CAP INTRON CAP	TF binding site mE1_TFBS_HSA
3R	26864207	3R_26864207_SNP [dm3] 3R_31038485_SNP [dm6]	A	G	4.458e^-4	1	UPSTREAM CanA1 INTERGENIC
3L	20538960	3L_20538960_SNP [dm3] 3L_20545860_SNP [dm6]	C	T	4.461e^-4	1	INTERGENIC
3R	8054971	3R_8054971_DEL [dm3] 3R_12229249_DEL [dm6]	TACATGAGCACATATGTGT...	T	4.483e^-4	1	UPSTREAM CG3916 INTERGENIC
2R	18994953	2R_18994953_SNP [dm3] 2R_23107430_SNP [dm6]	A	G	4.486e^-4	1	INTERGENIC
3L	11104563	3L_11104563_SNP [dm3] 3L_11111463_SNP [dm6]	G	A	4.494e^-4	1	SYNONYMOUS_CODING CG7638 DOWNSTREAM Sod	TF binding site mE1_TFBS_HSA
2L	12251938	2L_12251938_SNP [dm3] 2L_12251938_SNP [dm6]	A	C	4.495e^-4	1	INTRON aret	TF binding site BDTNP1_TFBS_twi
2R	17709120	2R_17709120_SNP [dm3] 2R_21821615_SNP [dm6]	T	G	4.509e^-4	1	SYNONYMOUS_CODING CG13492	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15172373	3L_15172373_SNP [dm3] 3L_15179273_SNP [dm6]	G	T	4.510e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	17929184	3L_17929184_SNP [dm3] 3L_17936084_SNP [dm6]	T	C	4.516e^-4	1	DOWNSTREAM CG43173 INTRON CG43174
2R	6592622	2R_6592622_SNP [dm3] 2R_10705117_SNP [dm6]	G	C	4.541e^-4	1	UPSTREAM stan INTRON stan
3L	5193033	3L_5193033_SNP [dm3] 3L_5199933_SNP [dm6]	A	C	4.544e^-4	1	INTRON shep
2L	20124155	2L_20124155_SNP [dm3] 2L_20124155_SNP [dm6]	T	A	4.546e^-4	1	INTERGENIC
3L	16168239	3L_16168239_SNP [dm3] 3L_16175139_SNP [dm6]	G	C	4.547e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7975808	3L_7975808_SNP [dm3] 3L_7982708_SNP [dm6]	A	C	4.550e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2805620	2L_2805620_SNP [dm3] 2L_2805620_SNP [dm6]	G	A	4.552e^-4	1	INTRON daw	TF binding site mE1_TFBS_Trl
3R	10374579	3R_10374579_SNP [dm3] 3R_14548857_SNP [dm6]	T	G	4.555e^-4	1	INTRON Pde6
3L	10109138	3L_10109138_INS [dm3] 3L_10116038_INS [dm6]	G	GATTACATTAAG...	4.563e^-4	1	INTRON dpr6
3R	26677807	3R_26677807_SNP [dm3] 3R_30852085_SNP [dm6]	G	C	4.566e^-4	1	UPSTREAM tll INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	1496078	3L_1496078_INS [dm3] 3L_1496078_INS [dm6]	T	TGC	4.572e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1496084	3L_1496084_SNP [dm3] 3L_1496084_SNP [dm6]	C	T	4.572e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	6092894	X_6092894_SNP [dm3] X_6198861_SNP [dm6]	A	G	4.575e^-4	1	UPSTREAM CG32751 DOWNSTREAM CG43090 INTERGENIC
3R	22908575	3R_22908575_SNP [dm3] 3R_27082853_SNP [dm6]	A	T	4.575e^-4	1	DOWNSTREAM Cpr97Ea & 1 other INTERGENIC	TF binding site mE1_TFBS_D
3R	25918811	3R_25918811_DEL [dm3] 3R_30093089_DEL [dm6]	CA	C	4.601e^-4	1	INTRON sima
2R	14615970	2R_14615970_SNP [dm3] 2R_18728465_SNP [dm6]	T	C	4.604e^-4	1	INTRON Hs3st-A & 1 other
3R	23635987	3R_23635987_SNP [dm3] 3R_27810265_SNP [dm6]	C	A	4.608e^-4	1	INTRON CG34353
2L	1065052	2L_1065052_SNP [dm3] 2L_1065052_SNP [dm6]	G	C	4.616e^-4	1	INTRON S	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6632257	2R_6632257_SNP [dm3] 2R_10744752_SNP [dm6]	G	A	4.618e^-4	1	INTRON CG33144
2R	4476504	2R_4476504_SNP [dm3] 2R_8588999_SNP [dm6]	T	C	4.619e^-4	1	INTERGENIC
2L	4556482	2L_4556482_SNP [dm3] 2L_4556482_SNP [dm6]	G	A	4.623e^-4	1	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19386664	3L_19386664_SNP [dm3] 3L_19393564_SNP [dm6]	T	A	4.636e^-4	1	INTRON CG32206
3R	18680270	3R_18680270_SNP [dm3] 3R_22854548_SNP [dm6]	C	G	4.660e^-4	1	INTERGENIC
3L	12229097	3L_12229097_SNP [dm3] 3L_12235997_SNP [dm6]	C	G	4.661e^-4	1	INTRON app
3L	12042415	3L_12042415_INS [dm3] 3L_12049315_INS [dm6]	T	TAT	4.672e^-4	1	INTRON rols
2L	3821190	2L_3821190_SNP [dm3] 2L_3821190_SNP [dm6]	C	T	4.680e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23480003	3R_23480003_SNP [dm3] 3R_27654281_SNP [dm6]	C	T	4.687e^-4	1	DOWNSTREAM RpS10a INTRON tau	TF binding site mE1_TFBS_inv
2R	10626278	2R_10626278_SNP [dm3] 2R_14738773_SNP [dm6]	G	C	4.696e^-4	1	DOWNSTREAM CG12858 EXON CR43428	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6592563	2R_6592563_SNP [dm3] 2R_10705058_SNP [dm6]	A	G	4.701e^-4	1	UPSTREAM stan INTRON stan
3R	2981896	3R_2981896_SNP [dm3] 3R_7156174_SNP [dm6]	C	G	4.704e^-4	1	UPSTREAM MAGE INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20116889	2L_20116889_SNP [dm3] 2L_20116889_SNP [dm6]	G	C	4.705e^-4	1	INTERGENIC	transposable element FlyBase
X	3529167	X_3529167_SNP [dm3] X_3635134_SNP [dm6]	C	T	4.713e^-4	1	INTRON AstA-R1
2R	6620059	2R_6620059_SNP [dm3] 2R_10732554_SNP [dm6]	C	T	4.723e^-4	1	UPSTREAM CG7220 INTRON CG7220
2L	15819585	2L_15819585_SNP [dm3] 2L_15819585_SNP [dm6]	A	T	4.728e^-4	1	INTERGENIC
3L	8426216	3L_8426216_SNP [dm3] 3L_8433116_SNP [dm6]	A	T	4.745e^-4	1	UTR_3_PRIME Unr DOWNSTREAM Unr & 1 other
2L	3337611	2L_3337611_SNP [dm3] 2L_3337611_SNP [dm6]	G	A	4.748e^-4	1	SYNONYMOUS_CODING E23	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11631323	3R_11631323_SNP [dm3] 3R_15805601_SNP [dm6]	G	A	4.764e^-4	1	INTRON alpha-Man-IIb
2R	15952676	2R_15952676_SNP [dm3] 2R_20065171_SNP [dm6]	C	T	4.767e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4112379	2R_4112379_SNP [dm3] 2R_8224874_SNP [dm6]	T	C	4.772e^-4	1	NON_SYNONYMOUS_CODING LRP1
2L	11016965	2L_11016965_INS [dm3] 2L_11016965_INS [dm6]	CA	TTAT	4.773e^-4	1	UPSTREAM CG14913 DOWNSTREAM Acp32CD INTRON Samuel
3L	1483447	3L_1483447_SNP [dm3] 3L_1483447_SNP [dm6]	C	T	4.782e^-4	1	INTRON stet	TF binding site mE1_TFBS_cad
3R	26542188	3R_26542188_SNP [dm3] 3R_30716466_SNP [dm6]	G	A	4.786e^-4	1	INTERGENIC
2R	11219586	2R_11219586_SNP [dm3] 2R_15332081_SNP [dm6]	C	T	4.789e^-4	1	UPSTREAM CR44371 INTRON Hr51
3L	8801562	3L_8801562_SNP [dm3] 3L_8808462_SNP [dm6]	T	C	4.792e^-4	1	UPSTREAM CG13308 DOWNSTREAM CG32024 INTERGENIC
2R	16485469	2R_16485469_SNP [dm3] 2R_20597964_SNP [dm6]	G	A	4.802e^-4	1	INTRON bl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17638714	X_17638714_SNP [dm3] X_17744681_SNP [dm6]	G	A	4.812e^-4	1	INTRON CG42684	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	10635473	3R_10635473_SNP [dm3] 3R_14809751_SNP [dm6]	C	T	4.816e^-4	1	SYNONYMOUS_CODING btsz INTRON btsz	TF binding site mE1_TFBS_cad
3L	12239779	3L_12239779_SNP [dm3] 3L_12246679_SNP [dm6]	G	T	4.829e^-4	1	UPSTREAM CR43991 INTRON app
2R	5643744	2R_5643744_SNP [dm3] 2R_9756239_SNP [dm6]	G	T	4.830e^-4	1	DOWNSTREAM CG1690 INTRON trpl
3R	15395077	3R_15395077_SNP [dm3] 3R_19569355_SNP [dm6]	G	C	4.836e^-4	1	UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	15953075	2R_15953075_SNP [dm3] 2R_20065570_SNP [dm6]	T	A	4.838e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	11822973	X_11822973_SNP [dm3] X_11928940_SNP [dm6]	T	C	4.839e^-4	1	SYNONYMOUS_CODING CG10362
3R	1021665	3R_1021665_SNP [dm3] 3R_5195943_SNP [dm6]	C	G	4.853e^-4	1	UPSTREAM snRNA:U4atac:82E INTRON cno
3L	11427570	3L_11427570_SNP [dm3] 3L_11434470_SNP [dm6]	A	C	4.856e^-4	1	DOWNSTREAM CG6149 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	614456	2L_614456_SNP [dm3] 2L_614456_SNP [dm6]	C	T	4.870e^-4	1	INTERGENIC
3R	1929573	3R_1929573_SNP [dm3] 3R_6103851_SNP [dm6]	G	C	4.871e^-4	1	DOWNSTREAM CR44929 INTRON CR44929	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3R	26542625	3R_26542625_INS [dm3] 3R_30716903_INS [dm6]	A	AGGCTA	4.872e^-4	1	INTERGENIC
2L	17117912	2L_17117912_SNP [dm3] 2L_17117912_SNP [dm6]	A	C	4.872e^-4	1	INTERGENIC
X	17481576	X_17481576_SNP [dm3] X_17587543_SNP [dm6]	G	A	4.885e^-4	1	INTRON CG12991
2L	21359194	2L_21359194_SNP [dm3] 2L_21359194_SNP [dm6]	A	G	4.892e^-4	1	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
3L	5192231	3L_5192231_SNP [dm3] 3L_5199131_SNP [dm6]	T	C	4.893e^-4	1	INTRON shep
2R	10947893	2R_10947893_SNP [dm3] 2R_15060388_SNP [dm6]	A	G	4.900e^-4	1	INTERGENIC
3R	10464800	3R_10464800_SNP [dm3] 3R_14639078_SNP [dm6]	G	A	4.911e^-4	1	INTRON CG7886 & 1 other
3R	26328121	3R_26328121_SNP [dm3] 3R_30502399_SNP [dm6]	T	C	4.917e^-4	1	SPLICE_SITE_REGION CG31371 SYNONYMOUS_CODING CG31371
X	1773591	X_1773591_SNP [dm3] X_1879558_SNP [dm6]	G	T	4.939e^-4	1	SPLICE_SITE_REGION CG14818 UTR_5_PRIME CG14818 UPSTREAM CG14806 DOWNSTREAM CG14805	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	15829462	2L_15829462_SNP [dm3] 2L_15829462_SNP [dm6]	A	T	4.939e^-4	1	INTERGENIC
2R	19136953	2R_19136953_SNP [dm3] 2R_23249430_SNP [dm6]	A	C	4.941e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	10456608	2L_10456608_INS [dm3] 2L_10456608_INS [dm6]	A	ACCAGACTTATACAACA...	4.955e^-4	1	UPSTREAM CG5322 INTRON CG5322
X	14695565	X_14695565_SNP [dm3] X_14801532_SNP [dm6]	G	C	4.964e^-4	1	INTRON rut
X	14695570	X_14695570_SNP [dm3] X_14801537_SNP [dm6]	A	C	4.964e^-4	1	INTRON rut
X	6119409	X_6119409_SNP [dm3] X_6225376_SNP [dm6]	T	G	4.986e^-4	1	UPSTREAM sqh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18194714	2L_18194714_SNP [dm3] 2L_18194714_SNP [dm6]	C	T	4.986e^-4	1	INTRON CG42750	TF binding site BDTNP1_TFBS_hb
3R	10464821	3R_10464821_SNP [dm3] 3R_14639099_SNP [dm6]	T	A	4.988e^-4	1	INTRON CG7886 & 1 other
3L	1168685	3L_1168685_SNP [dm3] 3L_1168685_SNP [dm6]	T	C	4.988e^-4	1	INTRON bab2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	23377405	3R_23377405_SNP [dm3] 3R_27551683_SNP [dm6]	A	G	4.998e^-4	1	SYNONYMOUS_CODING Klp98A	TF binding site mE1_TFBS_cad
3L	10102222	3L_10102222_SNP [dm3] 3L_10109122_SNP [dm6]	G	A	4.999e^-4	1	INTRON dpr6	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16010204	X_16010204_SNP [dm3] X_16116171_SNP [dm6]	A	G	5.000e^-4	1	INTERGENIC
3R	9698686	3R_9698686_SNP [dm3] 3R_13872964_SNP [dm6]	A	T	5.012e^-4	1	INTRON E5
2L	19286203	2L_19286203_SNP [dm3] 2L_19286203_SNP [dm6]	T	A	5.018e^-4	1	INTERGENIC
3R	11631178	3R_11631178_SNP [dm3] 3R_15805456_SNP [dm6]	G	C	5.024e^-4	1	INTRON alpha-Man-IIb
2L	17943685	2L_17943685_SNP [dm3] 2L_17943685_SNP [dm6]	G	A	5.024e^-4	1	INTERGENIC
2L	5765611	2L_5765611_SNP [dm3] 2L_5765611_SNP [dm6]	C	A	5.026e^-4	1	INTRON obst-E
2R	1577720	2R_1577720_SNP [dm3] 2R_5690215_SNP [dm6]	G	A	5.030e^-4	1	INTRON scaf
X	13147347	X_13147347_SNP [dm3] X_13253314_SNP [dm6]	A	T	5.030e^-4	1	INTRON mew
3L	14063447	3L_14063447_SNP [dm3] 3L_14070347_SNP [dm6]	C	G	5.035e^-4	1	UTR_3_PRIME CG32138
3R	19921333	3R_19921333_DEL [dm3] 3R_24095611_DEL [dm6]	CTGAC	C	5.037e^-4	1	INTRON 4EHP
2R	4149105	2R_4149105_SNP [dm3] 2R_8261600_SNP [dm6]	G	A	5.041e^-4	1	UPSTREAM CG2291 INTERGENIC
3L	17905094	3L_17905094_SNP [dm3] 3L_17911994_SNP [dm6]	G	C	5.043e^-4	1	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9793028	3R_9793028_SNP [dm3] 3R_13967306_SNP [dm6]	G	C	5.045e^-4	1	UTR_3_PRIME rdx DOWNSTREAM rdx & 1 other	TF binding site BDTNP1_TFBS_z
3R	23378430	3R_23378430_SNP [dm3] 3R_27552708_SNP [dm6]	A	G	5.068e^-4	1	SYNONYMOUS_CODING Klp98A	TF binding site mE1_TFBS_cad
3L	12228757	3L_12228757_INS [dm3] 3L_12235657_INS [dm6]	G	GTTGCTG	5.069e^-4	1	INTRON app
2L	2478655	2L_2478655_SNP [dm3] 2L_2478655_SNP [dm6]	G	A	5.076e^-4	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	3558308	3L_3558308_SNP [dm3] 3L_3558308_SNP [dm6]	T	A	5.096e^-4	1	INTRON Eip63E	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1697198	3L_1697198_SNP [dm3] 3L_1697198_SNP [dm6]	A	G	5.096e^-4	1	DOWNSTREAM CG12011 INTRON CG7991
X	11785967	X_11785967_SNP [dm3] X_11891934_SNP [dm6]	A	G	5.101e^-4	1	UTR_5_PRIME sicily UPSTREAM sicily	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8340351	2L_8340351_SNP [dm3] 2L_8340351_SNP [dm6]	C	A	5.102e^-4	1	INTRON CG14274
2R	8615251	2R_8615251_SNP [dm3] 2R_12727746_SNP [dm6]	T	A	5.131e^-4	1	INTRON CG42663
2R	15012857	2R_15012857_SNP [dm3] 2R_19125352_SNP [dm6]	T	A	5.146e^-4	1	UPSTREAM CG15117 INTRON CG15117
3R	26272232	3R_26272232_SNP [dm3] 3R_30446510_SNP [dm6]	A	G	5.155e^-4	1	INTRON aralar1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	10870192	X_10870192_SNP [dm3] X_10976159_SNP [dm6]	T	A	5.157e^-4	1	INTRON CG42339
3L	2826623	3L_2826623_SNP [dm3] 3L_2826623_SNP [dm6]	G	A	5.158e^-4	1	INTRON CG43444
3L	1495498	3L_1495498_SNP [dm3] 3L_1495498_SNP [dm6]	G	T	5.192e^-4	1	INTRON CG12084
2L	3821183	2L_3821183_SNP [dm3] 2L_3821183_SNP [dm6]	T	C	5.194e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2486925	2L_2486925_SNP [dm3] 2L_2486925_SNP [dm6]	C	A	5.200e^-4	1	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	1764446	X_1764446_SNP [dm3] X_1870413_SNP [dm6]	A	G	5.209e^-4	1	SYNONYMOUS_CODING CG14803	TF binding site mE1_TFBS_chinmo
3R	9380486	3R_9380486_SNP [dm3] 3R_13554764_SNP [dm6]	C	T	5.214e^-4	1	INTERGENIC
3L	13260742	3L_13260742_SNP [dm3] 3L_13267642_SNP [dm6]	T	G	5.214e^-4	1	INTRON caps	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14695595	X_14695595_SNP [dm3] X_14801562_SNP [dm6]	G	A	5.217e^-4	1	INTRON rut
2L	21359183	2L_21359183_SNP [dm3] 2L_21359183_SNP [dm6]	A	G	5.223e^-4	1	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
X	5230388	X_5230388_DEL [dm3] X_5336355_DEL [dm6]	GA	G	5.230e^-4	1	INTERGENIC
2L	14884336	2L_14884336_SNP [dm3] 2L_14884336_SNP [dm6]	C	A	5.248e^-4	1	UPSTREAM Mst35Bb & 1 other INTERGENIC
2R	11466712	2R_11466712_SNP [dm3] 2R_15579207_SNP [dm6]	T	A	5.251e^-4	1	INTERGENIC
3R	26638602	3R_26638602_SNP [dm3] 3R_30812880_SNP [dm6]	G	C	5.252e^-4	1	INTRON cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16072193	3L_16072193_SNP [dm3] 3L_16079093_SNP [dm6]	A	G	5.256e^-4	1	UTR_3_PRIME Mbs INTRON Mbs	TF binding site BDTNP1_TFBS_dl
3L	1496073	3L_1496073_SNP [dm3] 3L_1496073_SNP [dm6]	G	A	5.268e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5192276	3L_5192276_INS [dm3] 3L_5199176_INS [dm6]	C	CTTAAGTAACC...	5.270e^-4	1	INTRON shep
3R	9384672	3R_9384672_SNP [dm3] 3R_13558950_SNP [dm6]	A	G	5.272e^-4	1	INTERGENIC
3L	15023393	3L_15023393_SNP [dm3] 3L_15030293_SNP [dm6]	C	T	5.273e^-4	1	INTRON Sytbeta
2R	6592511	2R_6592511_SNP [dm3] 2R_10705006_SNP [dm6]	A	G	5.279e^-4	1	UPSTREAM stan INTRON stan
3L	20538962	3L_20538962_SNP [dm3] 3L_20545862_SNP [dm6]	G	A	5.280e^-4	1	INTERGENIC
3L	20538964	3L_20538964_DEL [dm3] 3L_20545864_DEL [dm6]	ATGGTTTTT	A	5.280e^-4	1	INTERGENIC
3L	20538979	3L_20538979_DEL [dm3] 3L_20545879_DEL [dm6]	TGCCTAGTCTTCCCTTC...	G	5.280e^-4	1	INTERGENIC
3L	20539000	3L_20539000_DEL [dm3] 3L_20545900_DEL [dm6]	AC	A	5.280e^-4	1	INTERGENIC
3L	1488581	3L_1488581_SNP [dm3] 3L_1488581_SNP [dm6]	T	A	5.280e^-4	1	UPSTREAM CR43701 & 1 other INTRON stet
3L	21968126	3L_21968126_SNP [dm3] 3L_21975026_SNP [dm6]	T	A	5.290e^-4	1	INTRON CG7470
3R	21959455	3R_21959455_SNP [dm3] 3R_26133733_SNP [dm6]	T	C	5.296e^-4	1	INTRON CG6142
2L	7206690	2L_7206690_SNP [dm3] 2L_7206690_SNP [dm6]	G	A	5.296e^-4	1	SYNONYMOUS_CODING CG13784 UTR_3_PRIME CG13784	TF binding site mE1_TFBS_sens
X	2056263	X_2056263_SNP [dm3] X_2162230_SNP [dm6]	C	A	5.297e^-4	1	UTR_5_PRIME CG3630 UPSTREAM Cyp4d1
2R	15952895	2R_15952895_SNP [dm3] 2R_20065390_SNP [dm6]	A	G	5.297e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	13622293	2L_13622293_SNP [dm3] 2L_13622293_SNP [dm6]	C	T	5.306e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	15943536	2R_15943536_SNP [dm3] 2R_20056031_SNP [dm6]	A	T	5.309e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12594845	2L_12594845_SNP [dm3] 2L_12594845_SNP [dm6]	C	A	5.318e^-4	1	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18025452	2R_18025452_SNP [dm3] 2R_22137947_SNP [dm6]	T	A	5.320e^-4	1	UTR_5_PRIME a UPSTREAM CG11269 INTRON a
3L	11878803	3L_11878803_SNP [dm3] 3L_11885703_SNP [dm6]	C	T	5.327e^-4	1	INTRON CG44837
X	15055163	X_15055163_SNP [dm3] X_15161130_SNP [dm6]	T	C	5.330e^-4	1	INTRON CG9095
2R	4224105	2R_4224105_SNP [dm3] 2R_8336600_SNP [dm6]	T	C	5.331e^-4	1	INTRON pdm3	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11103562	3L_11103562_INS [dm3] 3L_11110462_INS [dm6]	G	GG	5.344e^-4	1	UPSTREAM CG34012 INTRON CG7638	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12532802	2R_12532802_SNP [dm3] 2R_16645297_SNP [dm6]	C	T	5.355e^-4	1	INTRON gprs	TF binding site mE1_TFBS_cad
2L	7273120	2L_7273120_SNP [dm3] 2L_7273120_SNP [dm6]	C	G	5.368e^-4	1	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3R	25611860	3R_25611860_SNP [dm3] 3R_29786138_SNP [dm6]	G	A	5.375e^-4	1	INTRON kay
2L	20395538	2L_20395538_SNP [dm3] 2L_20395538_SNP [dm6]	C	T	5.382e^-4	1	INTRON CG10947
2R	6592595	2R_6592595_SNP [dm3] 2R_10705090_SNP [dm6]	C	T	5.385e^-4	1	UPSTREAM stan INTRON stan
3L	9674978	3L_9674978_SNP [dm3] 3L_9681878_SNP [dm6]	C	T	5.389e^-4	1	DOWNSTREAM CG16717 INTRON alphaTub67C	TF binding site mE1_TFBS_cad
X	1801804	X_1801804_SNP [dm3] X_1907771_SNP [dm6]	C	T	5.395e^-4	1	UTR_5_PRIME Edem1 UPSTREAM mip130 INTRON Edem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3L	1475320	3L_1475320_SNP [dm3] 3L_1475320_SNP [dm6]	T	G	5.396e^-4	1	UPSTREAM Ptp61F DOWNSTREAM stet INTERGENIC
3R	10464404	3R_10464404_SNP [dm3] 3R_14638682_SNP [dm6]	T	C	5.397e^-4	1	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20181276	2R_20181276_SNP [dm3] 2R_24293753_SNP [dm6]	C	G	5.403e^-4	1	UPSTREAM CG3394 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20115333	2L_20115333_SNP [dm3] 2L_20115333_SNP [dm6]	C	T	5.403e^-4	1	INTERGENIC
2R	20382101	2R_20382101_SNP [dm3] 2R_24494578_SNP [dm6]	A	T	5.415e^-4	1	UTR_5_PRIME Crtp UPSTREAM CG13590
3L	12236546	3L_12236546_SNP [dm3] 3L_12243446_SNP [dm6]	T	G	5.415e^-4	1	INTRON app
2L	21359178	2L_21359178_SNP [dm3] 2L_21359178_SNP [dm6]	G	A	5.433e^-4	1	DOWNSTREAM Tsp39D INTERGENIC	transposable element FlyBase
2L	18188454	2L_18188454_SNP [dm3] 2L_18188454_SNP [dm6]	T	A	5.436e^-4	1	INTRON CG42750
3R	18598206	3R_18598206_DEL [dm3] 3R_22772484_DEL [dm6]	ATTATTTAAA	A	5.443e^-4	1	UPSTREAM CG43095 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_kn
2R	10545101	2R_10545101_SNP [dm3] 2R_14657596_SNP [dm6]	A	G	5.452e^-4	1	INTRON Adgf-E
3R	21959599	3R_21959599_SNP [dm3] 3R_26133877_SNP [dm6]	A	G	5.457e^-4	1	INTRON CG6142
2R	20217667	2R_20217667_SNP [dm3] 2R_24330144_SNP [dm6]	G	A	5.468e^-4	1	EXON CR44810	TF binding site mE1_TFBS_Trl
3L	1496076	3L_1496076_SNP [dm3] 3L_1496076_SNP [dm6]	C	T	5.473e^-4	1	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	17913328	2R_17913328_SNP [dm3] 2R_22025823_SNP [dm6]	T	A	5.478e^-4	1	INTRON CG34370
3L	9008592	3L_9008592_SNP [dm3] 3L_9015492_SNP [dm6]	C	T	5.497e^-4	1	INTRON Doc2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15864235	2R_15864235_SNP [dm3] 2R_19976730_SNP [dm6]	G	T	5.498e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10879458	2R_10879458_SNP [dm3] 2R_14991953_SNP [dm6]	C	G	5.509e^-4	1	DOWNSTREAM CG10265 & 1 other INTRON CG7639	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4337346	3L_4337346_SNP [dm3] 3L_4337346_SNP [dm6]	G	A	5.513e^-4	1	INTRON Cip4
2L	11666757	2L_11666757_SNP [dm3] 2L_11666757_SNP [dm6]	C	G	5.519e^-4	1	DOWNSTREAM CR44481 INTERGENIC
2R	6820664	2R_6820664_SNP [dm3] 2R_10933159_SNP [dm6]	T	G	5.519e^-4	1	INTERGENIC
3L	8023513	3L_8023513_SNP [dm3] 3L_8030413_SNP [dm6]	C	T	5.526e^-4	1	INTRON nmo
3R	23635030	3R_23635030_DEL [dm3] 3R_27809308_DEL [dm6]	GACGGCTTCG	G	5.533e^-4	1	INTRON CG34353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7110178	2L_7110178_SNP [dm3] 2L_7110178_SNP [dm6]	A	G	5.535e^-4	1	INTRON Pvf3
3R	16990390	3R_16990390_SNP [dm3] 3R_21164668_SNP [dm6]	G	T	5.556e^-4	1	NON_SYNONYMOUS_CODING CG5810 DOWNSTREAM Snmp1 INTRON SNF4Agamma
3L	20539004	3L_20539004_MNP [dm3] 3L_20545904_MNP [dm6]	TCGT	AAAA	5.558e^-4	1	INTERGENIC
2L	12405123	2L_12405123_SNP [dm3] 2L_12405123_SNP [dm6]	G	A	5.559e^-4	1	UPSTREAM vir-1 INTRON vir-1
2L	8806222	2L_8806222_SNP [dm3] 2L_8806222_SNP [dm6]	A	G	5.566e^-4	1	INTERGENIC
3L	7990091	3L_7990091_SNP [dm3] 3L_7996991_SNP [dm6]	G	T	5.567e^-4	1	INTRON nmo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11608290	2R_11608290_SNP [dm3] 2R_15720785_SNP [dm6]	C	A	5.582e^-4	1	INTERGENIC
X	21908112	X_21908112_SNP [dm3] X_22506276_SNP [dm6]	A	G	5.586e^-4	1	INTRON l_1_G0196
2L	3972161	2L_3972161_SNP [dm3] 2L_3972161_SNP [dm6]	C	T	5.593e^-4	1	INTRON fred
2R	9965993	2R_9965993_SNP [dm3] 2R_14078488_SNP [dm6]	C	T	5.593e^-4	1	INTRON Prosap
2R	16754514	2R_16754514_INS [dm3] 2R_20867009_INS [dm6]	G	CACAAT	5.599e^-4	1	UTR_3_PRIME CG15227
3R	23404799	3R_23404799_SNP [dm3] 3R_27579077_SNP [dm6]	C	A	5.599e^-4	1	INTRON wdb
3L	3141281	3L_3141281_SNP [dm3] 3L_3141281_SNP [dm6]	G	A	5.599e^-4	1	INTRON CG11537	TF binding site mE1_TFBS_HSA
2L	11667600	2L_11667600_SNP [dm3] 2L_11667600_SNP [dm6]	C	G	5.601e^-4	1	INTERGENIC
2R	7859605	2R_7859605_SNP [dm3] 2R_11972100_SNP [dm6]	G	A	5.605e^-4	1	SYNONYMOUS_CODING CG8290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	20062910	3L_20062910_SNP [dm3] 3L_20069810_SNP [dm6]	G	T	5.625e^-4	1	INTRON sNPF-R	TF binding site BDTNP1_TFBS_twi
3R	10241073	3R_10241073_SNP [dm3] 3R_14415351_SNP [dm6]	A	G	5.625e^-4	1	INTRON cv-c	TF binding site BDTNP1_TFBS_twi
2L	8914393	2L_8914393_SNP [dm3] 2L_8914393_SNP [dm6]	T	C	5.629e^-4	1	INTRON CG34398
3R	994449	3R_994449_INS [dm3] 3R_5168727_INS [dm6]	C	CCTTGGGC	5.631e^-4	1	INTRON dpr16	transposable element FlyBase
3R	24474267	3R_24474267_SNP [dm3] 3R_28648545_SNP [dm6]	C	G	5.636e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4369767	2L_4369767_SNP [dm3] 2L_4369767_SNP [dm6]	G	A	5.638e^-4	1	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
X	15052475	X_15052475_SNP [dm3] X_15158442_SNP [dm6]	T	G	5.638e^-4	1	INTRON CG9095
3R	15525891	3R_15525891_INS [dm3] 3R_19700169_INS [dm6]	G	GTAGCT	5.638e^-4	1	INTERGENIC
3L	2162128	3L_2162128_SNP [dm3] 3L_2162128_SNP [dm6]	T	C	5.639e^-4	1	INTRON CG15822
2L	11666754	2L_11666754_SNP [dm3] 2L_11666754_SNP [dm6]	A	T	5.647e^-4	1	DOWNSTREAM CR44481 INTERGENIC
2R	4108369	2R_4108369_SNP [dm3] 2R_8220864_SNP [dm6]	C	T	5.651e^-4	1	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	4665450	2R_4665450_SNP [dm3] 2R_8777945_SNP [dm6]	G	T	5.651e^-4	1	INTERGENIC
3L	16418829	3L_16418829_SNP [dm3] 3L_16425729_SNP [dm6]	C	T	5.654e^-4	1	INTRON CG33158 & 1 other
X	5640422	X_5640422_SNP [dm3] X_5746389_SNP [dm6]	A	T	5.658e^-4	1	UPSTREAM IntS6 INTRON IntS6	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	17307898	3R_17307898_SNP [dm3] 3R_21482176_SNP [dm6]	T	A	5.661e^-4	1	UPSTREAM CG7922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
3R	9314105	3R_9314105_SNP [dm3] 3R_13488383_SNP [dm6]	T	C	5.664e^-4	1	INTERGENIC
2R	11164277	2R_11164277_SNP [dm3] 2R_15276772_SNP [dm6]	A	G	5.686e^-4	1	INTRON Trpm
2L	19855337	2L_19855337_DEL [dm3] 2L_19855337_DEL [dm6]	AT	A	5.689e^-4	1	INTRON sick
2R	13860415	2R_13860415_SNP [dm3] 2R_17972910_SNP [dm6]	A	G	5.695e^-4	1	INTERGENIC
2R	12098079	2R_12098079_SNP [dm3] 2R_16210574_SNP [dm6]	A	C	5.700e^-4	1	UPSTREAM mrj INTRON mrj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10686669	3R_10686669_SNP [dm3] 3R_14860947_SNP [dm6]	G	T	5.702e^-4	1	INTRON btsz
3L	12232387	3L_12232387_SNP [dm3] 3L_12239287_SNP [dm6]	A	T	5.704e^-4	1	INTRON app
3L	9227176	3L_9227176_SNP [dm3] 3L_9234076_SNP [dm6]	G	T	5.707e^-4	1	INTERGENIC
3R	12174677	3R_12174677_SNP [dm3] 3R_16348955_SNP [dm6]	T	A	5.709e^-4	1	UTR_5_PRIME CG14879 UPSTREAM Manf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1485190	3L_1485190_SNP [dm3] 3L_1485190_SNP [dm6]	C	T	5.710e^-4	1	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	17770038	2R_17770038_SNP [dm3] 2R_21882533_SNP [dm6]	G	T	5.710e^-4	1	UTR_5_PRIME PpN58A UPSTREAM Fili INTRON Fili
3R	4780226	3R_4780226_SNP [dm3] 3R_8954504_SNP [dm6]	A	G	5.711e^-4	1	INTRON CG11966
X	14169801	X_14169801_SNP [dm3] X_14275768_SNP [dm6]	A	G	5.711e^-4	1	NON_SYNONYMOUS_CODING na	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19427764	X_19427764_SNP [dm3] X_19533731_SNP [dm6]	A	G	5.718e^-4	1	INTRON CG32532	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8919861	2R_8919861_SNP [dm3] 2R_13032356_SNP [dm6]	G	T	5.720e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	10501309	X_10501309_SNP [dm3] X_10607276_SNP [dm6]	G	A	5.729e^-4	1	SYNONYMOUS_CODING CG43347	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	23378495	3R_23378495_SNP [dm3] 3R_27552773_SNP [dm6]	A	C	5.733e^-4	1	SPLICE_SITE_REGION Klp98A INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	11485771	2R_11485771_SNP [dm3] 2R_15598266_SNP [dm6]	G	A	5.735e^-4	1	INTERGENIC
2L	4233626	2L_4233626_SNP [dm3] 2L_4233626_SNP [dm6]	A	G	5.735e^-4	1	INTERGENIC
3R	5044133	3R_5044133_SNP [dm3] 3R_9218411_SNP [dm6]	G	T	5.737e^-4	1	INTRON pum	TF binding site mE1_TFBS_HSA
3L	8558654	3L_8558654_SNP [dm3] 3L_8565554_SNP [dm6]	G	A	5.738e^-4	1	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	21462031	3R_21462031_SNP [dm3] 3R_25636309_SNP [dm6]	A	C	5.738e^-4	1	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11193707	2R_11193707_SNP [dm3] 2R_15306202_SNP [dm6]	C	T	5.742e^-4	1	INTRON Trpm
3R	10116797	3R_10116797_SNP [dm3] 3R_14291075_SNP [dm6]	T	A	5.742e^-4	1	INTRON CG12207
2R	12532773	2R_12532773_SNP [dm3] 2R_16645268_SNP [dm6]	C	A	5.746e^-4	1	INTRON gprs	TF binding site mE1_TFBS_cad
3R	23378443	3R_23378443_SNP [dm3] 3R_27552721_SNP [dm6]	A	G	5.751e^-4	1	SPLICE_SITE_REGION Klp98A INTRON Klp98A	TF binding site mE1_TFBS_cad
3R	23490478	3R_23490478_SNP [dm3] 3R_27664756_SNP [dm6]	C	A	5.754e^-4	1	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2L	19452748	2L_19452748_SNP [dm3] 2L_19452748_SNP [dm6]	G	A	5.761e^-4	1	UTR_5_PRIME Top2 INTRON Top2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4360057	2L_4360057_SNP [dm3] 2L_4360057_SNP [dm6]	G	A	5.770e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	13167385	2R_13167385_SNP [dm3] 2R_17279880_SNP [dm6]	A	G	5.770e^-4	1	INTRON mbl
2R	12919673	2R_12919673_DEL [dm3] 2R_17032168_DEL [dm6]	TTCTCTTTTAAACTTTT...	T	5.770e^-4	1	DOWNSTREAM CG43327 & 1 other INTRON RhoGEF2
X	6100642	X_6100642_DEL [dm3] X_6206609_DEL [dm6]	TT	T	5.773e^-4	1	INTERGENIC
3L	3792814	3L_3792814_SNP [dm3] 3L_3792814_SNP [dm6]	G	A	5.775e^-4	1	INTRON CG32264
2R	17188973	2R_17188973_SNP [dm3] 2R_21301468_SNP [dm6]	C	T	5.794e^-4	1	UPSTREAM CG42672 INTRON CG42672
X	17609496	X_17609496_SNP [dm3] X_17715463_SNP [dm6]	T	A	5.795e^-4	1	INTRON CG42684
X	16010144	X_16010144_SNP [dm3] X_16116111_SNP [dm6]	A	G	5.796e^-4	1	INTERGENIC
3L	3544105	3L_3544105_SNP [dm3] 3L_3544105_SNP [dm6]	G	A	5.806e^-4	1	INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10392098	2R_10392098_SNP [dm3] 2R_14504593_SNP [dm6]	C	A	5.810e^-4	1	UPSTREAM Asx INTRON Asx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	5192718	3L_5192718_SNP [dm3] 3L_5199618_SNP [dm6]	T	C	5.813e^-4	1	INTRON shep
2L	14487302	2L_14487302_SNP [dm3] 2L_14487302_SNP [dm6]	G	A	5.821e^-4	1	DOWNSTREAM CR44731 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	17839310	2R_17839310_SNP [dm3] 2R_21951805_SNP [dm6]	A	G	5.823e^-4	1	INTRON CG13488
3L	5360539	3L_5360539_SNP [dm3] 3L_5367439_SNP [dm6]	C	T	5.828e^-4	1	SYNONYMOUS_CODING CG10635 DOWNSTREAM Membrin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	16507905	2L_16507905_SNP [dm3] 2L_16507905_SNP [dm6]	T	C	5.836e^-4	1	DOWNSTREAM CG5953 & 1 other INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	10851249	3R_10851249_SNP [dm3] 3R_15025527_SNP [dm6]	G	A	5.837e^-4	1	INTERGENIC
3R	22401884	3R_22401884_SNP [dm3] 3R_26576162_SNP [dm6]	T	C	5.847e^-4	1	INTRON scrib
3L	6507485	3L_6507485_SNP [dm3] 3L_6514385_SNP [dm6]	C	T	5.850e^-4	1	INTRON sfl
2L	16335874	2L_16335874_SNP [dm3] 2L_16335874_SNP [dm6]	T	C	5.851e^-4	1	NON_SYNONYMOUS_CODING CG31817
2L	13622295	2L_13622295_SNP [dm3] 2L_13622295_SNP [dm6]	C	A	5.861e^-4	1	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8625461	3L_8625461_SNP [dm3] 3L_8632361_SNP [dm6]	T	C	5.866e^-4	1	INTRON Zasp66 & 1 other
3R	947005	3R_947005_SNP [dm3] 3R_5121283_SNP [dm6]	A	T	5.897e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16462741	2R_16462741_SNP [dm3] 2R_20575236_SNP [dm6]	G	T	5.906e^-4	1	INTRON qsm
3L	9456505	3L_9456505_SNP [dm3] 3L_9463405_SNP [dm6]	T	A	5.908e^-4	1	UTR_5_PRIME CG44838	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	20538959	3L_20538959_SNP [dm3] 3L_20545859_SNP [dm6]	G	T	5.909e^-4	1	INTERGENIC
3R	27208848	3R_27208848_SNP [dm3] 3R_31383126_SNP [dm6]	G	A	5.915e^-4	1	INTRON CG1607
2R	20566550	2R_20566550_SNP [dm3] 2R_24679027_SNP [dm6]	C	G	5.919e^-4	1	INTRON Mmp1
2L	18159156	2L_18159156_INS [dm3] 2L_18159156_INS [dm6]	A	ACTTAAGTATTTTACTATTC...	5.928e^-4	1	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
3R	3093226	3R_3093226_SNP [dm3] 3R_7267504_SNP [dm6]	A	C	5.929e^-4	1	INTRON Syt4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
2R	15953069	2R_15953069_SNP [dm3] 2R_20065564_SNP [dm6]	A	C	5.931e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	23328998	3R_23328998_SNP [dm3] 3R_27503276_SNP [dm6]	A	T	5.945e^-4	1	UPSTREAM CG5402 INTERGENIC
X	16933857	X_16933857_SNP [dm3] X_17039824_SNP [dm6]	A	C	5.946e^-4	1	INTRON CG45002
3R	9314450	3R_9314450_SNP [dm3] 3R_13488728_SNP [dm6]	T	G	5.960e^-4	1	INTERGENIC
3L	2036586	3L_2036586_SNP [dm3] 3L_2036586_SNP [dm6]	T	C	5.966e^-4	1	DOWNSTREAM CG42355 INTERGENIC
X	3529170	X_3529170_SNP [dm3] X_3635137_SNP [dm6]	G	C	5.981e^-4	1	INTRON AstA-R1
2R	17839685	2R_17839685_SNP [dm3] 2R_21952180_SNP [dm6]	T	C	6.000e^-4	1	SYNONYMOUS_CODING CG13488
2L	17922292	2L_17922292_SNP [dm3] 2L_17922292_SNP [dm6]	T	A	6.003e^-4	1	INTERGENIC
2L	18192471	2L_18192471_SNP [dm3] 2L_18192471_SNP [dm6]	A	G	6.009e^-4	1	INTRON CG42750
3L	8873937	3L_8873937_SNP [dm3] 3L_8880837_SNP [dm6]	T	A	6.033e^-4	1	INTRON dally
3R	18753240	3R_18753240_SNP [dm3] 3R_22927518_SNP [dm6]	T	C	6.052e^-4	1	INTRON klg
3L	14318197	3L_14318197_SNP [dm3] 3L_14325097_SNP [dm6]	A	G	6.084e^-4	1	INTRON fz & 1 other
2R	6080723	2R_6080723_SNP [dm3] 2R_10193218_SNP [dm6]	T	C	6.094e^-4	1	UPSTREAM KCNQ INTERGENIC	TF binding site mE1_TFBS_inv
3L	11593454	3L_11593454_SNP [dm3] 3L_11600354_SNP [dm6]	T	C	6.097e^-4	1	UPSTREAM CG14137 INTRON CG7368
3R	24892744	3R_24892744_SNP [dm3] 3R_29067022_SNP [dm6]	A	G	6.100e^-4	1	INTRON CG11873
2R	17340973	2R_17340973_SNP [dm3] 2R_21453468_SNP [dm6]	G	A	6.110e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1489140	3L_1489140_SNP [dm3] 3L_1489140_SNP [dm6]	G	A	6.126e^-4	1	DOWNSTREAM CR43701 & 1 other INTRON stet	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12532764	2R_12532764_SNP [dm3] 2R_16645259_SNP [dm6]	G	T	6.148e^-4	1	SPLICE_SITE_REGION gprs INTRON gprs	TF binding site mE1_TFBS_cad
3L	16168237	3L_16168237_SNP [dm3] 3L_16175137_SNP [dm6]	T	C	6.149e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27665465	3R_27665465_SNP [dm3] 3R_31839743_SNP [dm6]	T	A	6.156e^-4	1	INTRON RhoGAP100F
X	2834616	X_2834616_SNP [dm3] X_2940583_SNP [dm6]	A	T	6.159e^-4	1	UPSTREAM CG14421 DOWNSTREAM CG14420 INTRON kirre
X	1801987	X_1801987_SNP [dm3] X_1907954_SNP [dm6]	A	G	6.159e^-4	1	UTR_5_PRIME Edem1 UPSTREAM mip130 & 1 other INTRON Edem1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	9303632	2R_9303632_SNP [dm3] 2R_13416127_SNP [dm6]	A	T	6.161e^-4	1	INTRON CG42321	TF binding site mE1_TFBS_HSA
X	19776793	X_19776793_SNP [dm3] X_19882760_SNP [dm6]	C	A	6.161e^-4	1	INTRON Hers	TF binding site BDTNP1_TFBS_da
X	3531232	X_3531232_SNP [dm3] X_3637199_SNP [dm6]	T	C	6.180e^-4	1	INTRON AstA-R1
2L	12441088	2L_12441088_SNP [dm3] 2L_12441088_SNP [dm6]	A	T	6.181e^-4	1	UTR_3_PRIME Elf DOWNSTREAM Oatp33Ea & 1 other
2R	19148438	2R_19148438_MNP [dm3] 2R_23260915_MNP [dm6]	TCCCATTA	GTAATGGG	6.206e^-4	1	INTERGENIC
3R	9604613	3R_9604613_DEL [dm3] 3R_13778891_DEL [dm6]	AGCATAACCCTAA...	A	6.232e^-4	1	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10545147	2R_10545147_SNP [dm3] 2R_14657642_SNP [dm6]	T	A	6.233e^-4	1	INTRON Adgf-E
2L	1399455	2L_1399455_SNP [dm3] 2L_1399455_SNP [dm6]	A	G	6.235e^-4	1	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4443438	3R_4443438_SNP [dm3] 3R_8617716_SNP [dm6]	C	T	6.235e^-4	1	INTRON 5-HT2B
2R	7640013	2R_7640013_SNP [dm3] 2R_11752508_SNP [dm6]	C	T	6.245e^-4	1	INTERGENIC
3L	13203769	3L_13203769_INS [dm3] 3L_13210669_INS [dm6]	A	AA	6.248e^-4	1	UPSTREAM tRNA:CR32129 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11434998	3L_11434998_DEL [dm3] 3L_11441898_DEL [dm6]	TTTACTA	T	6.257e^-4	1	INTERGENIC
3L	5671409	3L_5671409_SNP [dm3] 3L_5678309_SNP [dm6]	A	T	6.260e^-4	1	UPSTREAM sif INTRON sif
3R	23178719	3R_23178719_SNP [dm3] 3R_27352997_SNP [dm6]	C	T	6.265e^-4	1	INTRON CG42534
2R	13653034	2R_13653034_SNP [dm3] 2R_17765529_SNP [dm6]	A	G	6.266e^-4	1	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	19387044	3L_19387044_SNP [dm3] 3L_19393944_SNP [dm6]	A	T	6.270e^-4	1	INTRON CG32206
X	17481570	X_17481570_DEL [dm3] X_17587537_DEL [dm6]	GGCTT	CA	6.276e^-4	1	INTRON CG12991
2L	18158959	2L_18158959_SNP [dm3] 2L_18158959_SNP [dm6]	G	T	6.277e^-4	1	UTR_5_PRIME CG7200 UPSTREAM CG7200 DOWNSTREAM CG42750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Ubx
2R	13382791	2R_13382791_SNP [dm3] 2R_17495286_SNP [dm6]	G	A	6.279e^-4	1	SYNONYMOUS_CODING CG30103	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	21905836	X_21905836_SNP [dm3] X_22504000_SNP [dm6]	T	A	6.282e^-4	1	DOWNSTREAM l_1_G0196 INTRON l_1_G0196
3R	11141542	3R_11141542_SNP [dm3] 3R_15315820_SNP [dm6]	A	G	6.286e^-4	1	UPSTREAM CG14866 DOWNSTREAM Tm2 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	937406	3L_937406_DEL [dm3] 3L_937406_DEL [dm6]	TACTTCTGT	G	6.292e^-4	1	INTRON Glut1
3L	937416	3L_937416_SNP [dm3] 3L_937416_SNP [dm6]	C	A	6.292e^-4	1	INTRON Glut1
2R	17839762	2R_17839762_SNP [dm3] 2R_21952257_SNP [dm6]	G	A	6.293e^-4	1	SYNONYMOUS_CODING CG13488
2R	20516536	2R_20516536_SNP [dm3] 2R_24629013_SNP [dm6]	T	A	6.311e^-4	1	UPSTREAM snoRNA:Me18S-G393 INTRON CG13594
2R	17367028	2R_17367028_SNP [dm3] 2R_21479523_SNP [dm6]	T	C	6.313e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	23411647	3R_23411647_INS [dm3] 3R_27585925_INS [dm6]	G	GTAAATACTCATAG...	6.314e^-4	1	UTR_3_PRIME raps DOWNSTREAM CG5639
3R	25921450	3R_25921450_SNP [dm3] 3R_30095728_SNP [dm6]	G	A	6.318e^-4	1	INTRON sima
2L	16063704	2L_16063704_SNP [dm3] 2L_16063704_SNP [dm6]	A	G	6.318e^-4	1	INTRON beat-Ia	TF binding site BDTNP1_TFBS_twi
3R	26486703	3R_26486703_SNP [dm3] 3R_30660981_SNP [dm6]	A	G	6.322e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
3L	2161834	3L_2161834_SNP [dm3] 3L_2161834_SNP [dm6]	G	A	6.324e^-4	1	UTR_5_PRIME CG15822
2R	17331645	2R_17331645_SNP [dm3] 2R_21444140_SNP [dm6]	A	T	6.342e^-4	1	INTRON Sdc
3R	4748006	3R_4748006_SNP [dm3] 3R_8922284_SNP [dm6]	T	C	6.346e^-4	1	INTRON pyd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1249877	3L_1249877_SNP [dm3] 3L_1249877_SNP [dm6]	G	A	6.352e^-4	1	SYNONYMOUS_CODING Sac1 UPSTREAM CG9129	TF binding site mE1_TFBS_sens
3L	10284203	3L_10284203_SNP [dm3] 3L_10291103_SNP [dm6]	T	A	6.353e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10838913	3R_10838913_SNP [dm3] 3R_15013191_SNP [dm6]	G	T	6.357e^-4	1	INTERGENIC
2L	11667556	2L_11667556_SNP [dm3] 2L_11667556_SNP [dm6]	C	G	6.374e^-4	1	INTERGENIC
2R	20312847	2R_20312847_SNP [dm3] 2R_24425324_SNP [dm6]	T	A	6.375e^-4	1	UPSTREAM CG42383 INTRON prom	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18703834	3R_18703834_SNP [dm3] 3R_22878112_SNP [dm6]	G	A	6.382e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	9415436	2L_9415436_SNP [dm3] 2L_9415436_SNP [dm6]	G	A	6.385e^-4	1	UPSTREAM Shawl INTERGENIC
3R	19293431	3R_19293431_SNP [dm3] 3R_23467709_SNP [dm6]	A	T	6.388e^-4	1	INTRON CG4374
2R	10545103	2R_10545103_SNP [dm3] 2R_14657598_SNP [dm6]	G	C	6.392e^-4	1	INTRON Adgf-E
2L	7250700	2L_7250700_SNP [dm3] 2L_7250700_SNP [dm6]	A	T	6.393e^-4	1	UTR_3_PRIME CG13786
X	10921653	X_10921653_SNP [dm3] X_11027620_SNP [dm6]	C	T	6.412e^-4	1	INTRON CG42339
2L	1274043	2L_1274043_SNP [dm3] 2L_1274043_SNP [dm6]	G	A	6.426e^-4	1	INTRON robo3
2L	1274050	2L_1274050_SNP [dm3] 2L_1274050_SNP [dm6]	G	A	6.426e^-4	1	INTRON robo3
2R	15260027	2R_15260027_SNP [dm3] 2R_19372522_SNP [dm6]	T	C	6.432e^-4	1	INTRON CG9416	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11193656	2R_11193656_SNP [dm3] 2R_15306151_SNP [dm6]	A	C	6.437e^-4	1	INTRON Trpm
2R	6820546	2R_6820546_SNP [dm3] 2R_10933041_SNP [dm6]	A	T	6.442e^-4	1	INTERGENIC
3R	11631348	3R_11631348_SNP [dm3] 3R_15805626_SNP [dm6]	G	A	6.454e^-4	1	INTRON alpha-Man-IIb
3L	12231774	3L_12231774_SNP [dm3] 3L_12238674_SNP [dm6]	T	G	6.454e^-4	1	INTRON app
2R	11118940	2R_11118940_INS [dm3] 2R_15231435_INS [dm6]	T	TT	6.462e^-4	1	INTRON Fs EXON CR44370
3R	24782284	3R_24782284_SNP [dm3] 3R_28956562_SNP [dm6]	A	G	6.464e^-4	1	INTRON CG14521
3R	10414283	3R_10414283_SNP [dm3] 3R_14588561_SNP [dm6]	T	A	6.472e^-4	1	INTRON stumps	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10522955	3L_10522955_SNP [dm3] 3L_10529855_SNP [dm6]	T	G	6.473e^-4	1	INTRON A2bp1
2L	7271925	2L_7271925_SNP [dm3] 2L_7271925_SNP [dm6]	T	C	6.480e^-4	1	INTRON Wnt4
3L	19387043	3L_19387043_SNP [dm3] 3L_19393943_SNP [dm6]	G	T	6.485e^-4	1	INTRON CG32206
2L	13091197	2L_13091197_SNP [dm3] 2L_13091197_SNP [dm6]	T	C	6.486e^-4	1	DOWNSTREAM CR44197 INTERGENIC
3L	13357037	3L_13357037_SNP [dm3] 3L_13363937_SNP [dm6]	G	A	6.489e^-4	1	INTERGENIC
X	8900380	X_8900380_SNP [dm3] X_9006347_SNP [dm6]	G	A	6.491e^-4	1	INTRON rdgA & 1 other
2R	14999300	2R_14999300_SNP [dm3] 2R_19111795_SNP [dm6]	T	C	6.495e^-4	1	INTRON 5-HT1A	TF binding site BDTNP1_TFBS_twi
3R	14552254	3R_14552254_SNP [dm3] 3R_18726532_SNP [dm6]	T	C	6.512e^-4	1	UPSTREAM CG7714 INTRON Cha
X	13148355	X_13148355_SNP [dm3] X_13254322_SNP [dm6]	T	G	6.512e^-4	1	INTRON mew	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16142887	2R_16142887_SNP [dm3] 2R_20255382_SNP [dm6]	T	A	6.514e^-4	1	UPSTREAM CG9864 INTRON Ate1
2R	17367054	2R_17367054_SNP [dm3] 2R_21479549_SNP [dm6]	A	C	6.517e^-4	1	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3L	5084368	3L_5084368_SNP [dm3] 3L_5084368_SNP [dm6]	G	A	6.518e^-4	1	INTERGENIC
2R	20691775	2R_20691775_SNP [dm3] 2R_24804252_SNP [dm6]	T	C	6.521e^-4	1	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site mE1_TFBS_chinmo
3R	10872725	3R_10872725_SNP [dm3] 3R_15047003_SNP [dm6]	C	T	6.524e^-4	1	INTERGENIC
3R	25529847	3R_25529847_SNP [dm3] 3R_29704125_SNP [dm6]	T	C	6.538e^-4	1	INTERGENIC
2R	12532792	2R_12532792_SNP [dm3] 2R_16645287_SNP [dm6]	T	A	6.543e^-4	1	INTRON gprs	TF binding site mE1_TFBS_cad
2L	7250535	2L_7250535_SNP [dm3] 2L_7250535_SNP [dm6]	A	G	6.548e^-4	1	DOWNSTREAM CG13786 INTERGENIC
3R	26199104	3R_26199104_SNP [dm3] 3R_30373382_SNP [dm6]	T	C	6.558e^-4	1	DOWNSTREAM hdc INTERGENIC
X	19702135	X_19702135_SNP [dm3] X_19808102_SNP [dm6]	C	T	6.558e^-4	1	INTERGENIC
2L	18006992	2L_18006992_SNP [dm3] 2L_18006992_SNP [dm6]	A	G	6.569e^-4	1	SYNONYMOUS_CODING CG5693 UPSTREAM CG42659 & 2 others	TF binding site mE1_TFBS_inv
2L	12441397	2L_12441397_DEL [dm3] 2L_12441397_DEL [dm6]	TAAT	T	6.583e^-4	1	DOWNSTREAM Oatp33Ea & 1 other INTERGENIC
2R	17733170	2R_17733170_SNP [dm3] 2R_21845665_SNP [dm6]	A	T	6.585e^-4	1	INTERGENIC
3L	12823020	3L_12823020_SNP [dm3] 3L_12829920_SNP [dm6]	G	A	6.594e^-4	1	INTRON CG10960
3L	4738929	3L_4738929_SNP [dm3] 3L_4738929_SNP [dm6]	A	G	6.609e^-4	1	INTRON RhoGEF64C
3R	1941776	3R_1941776_SNP [dm3] 3R_6116054_SNP [dm6]	G	A	6.622e^-4	1	INTERGENIC
2L	9878212	2L_9878212_SNP [dm3] 2L_9878212_SNP [dm6]	A	G	6.632e^-4	1	INTRON nAChRalpha6
3R	7342050	3R_7342050_SNP [dm3] 3R_11516328_SNP [dm6]	G	C	6.640e^-4	1	INTERGENIC
X	784993	X_784993_SNP [dm3] X_890960_SNP [dm6]	G	C	6.649e^-4	1	INTRON CG43867
2R	11181117	2R_11181117_SNP [dm3] 2R_15293612_SNP [dm6]	G	A	6.676e^-4	1	DOWNSTREAM CR44241 INTRON Trpm	TF binding site BDTNP1_TFBS_twi
X	3352289	X_3352289_DEL [dm3] X_3458256_DEL [dm6]	TT	T	6.685e^-4	1	DOWNSTREAM CG16782 INTRON CR44999
3R	19964175	3R_19964175_SNP [dm3] 3R_24138453_SNP [dm6]	A	G	6.686e^-4	1	DOWNSTREAM Sec10 INTRON Npc2f	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12239661	3L_12239661_SNP [dm3] 3L_12246561_SNP [dm6]	C	A	6.687e^-4	1	UPSTREAM CR43991 INTRON app
2R	17322717	2R_17322717_SNP [dm3] 2R_21435212_SNP [dm6]	G	A	6.688e^-4	1	INTRON Sdc

By genomic position
Variant impact
Gene name

pc_Surv_MeHg_0 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results