DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.145e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.04709
In_3R_Mo	0.04223

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	5.5418	0.0626
In_3R_Mo	5.8002	0.055

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2443 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	20790627	3R_20790627_SNP [dm3] 3R_24964905_SNP [dm6]	G	A	5.394e^-7	0.326	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15644548	3R_15644548_SNP [dm3] 3R_19818826_SNP [dm6]	G	A	5.664e^-7	0.326	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6334946	2R_6334946_SNP [dm3] 2R_10447441_SNP [dm6]	G	A	6.905e^-7	0.326	INTRON Galphao
3R	15644534	3R_15644534_SNP [dm3] 3R_19818812_SNP [dm6]	G	A	7.992e^-7	0.326	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12316489	3L_12316489_SNP [dm3] 3L_12323389_SNP [dm6]	T	A	8.691e^-7	0.326	INTERGENIC
3R	26373792	3R_26373792_SNP [dm3] 3R_30548070_SNP [dm6]	C	T	1.198e^-6	0.347	INTRON tmod
3L	12324441	3L_12324441_SNP [dm3] 3L_12331341_SNP [dm6]	T	A	1.438e^-6	0.347	INTRON CG32105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12316555	3L_12316555_DEL [dm3] 3L_12323455_DEL [dm6]	AGTGTATTATAA...	A	1.612e^-6	0.347	INTERGENIC
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	1.665e^-6	0.347	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	10331313	3L_10331313_SNP [dm3] 3L_10338213_SNP [dm6]	T	C	1.859e^-6	0.349	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25839303	3R_25839303_SNP [dm3] 3R_30013581_SNP [dm6]	T	G	2.731e^-6	0.466	INTRON CG7920
3L	1741283	3L_1741283_SNP [dm3] 3L_1741283_SNP [dm6]	G	A	3.175e^-6	0.496	UPSTREAM Gk INTRON Gk
3R	18081003	3R_18081003_SNP [dm3] 3R_22255281_SNP [dm6]	C	G	3.703e^-6	0.534	INTRON SKIP
3R	25219905	3R_25219905_SNP [dm3] 3R_29394183_SNP [dm6]	T	G	4.184e^-6	0.561	INTRON Ptp99A
2L	4658980	2L_4658980_SNP [dm3] 2L_4658980_SNP [dm6]	T	A	5.050e^-6	0.599	INTERGENIC
2R	18974866	2R_18974866_SNP [dm3] 2R_23087343_SNP [dm6]	C	T	5.106e^-6	0.599	SYNONYMOUS_CODING CG13538
3R	16937461	3R_16937461_SNP [dm3] 3R_21111739_SNP [dm6]	C	T	5.809e^-6	0.607	UTR_5_PRIME Rab11 DOWNSTREAM rtet	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12852720	3L_12852720_SNP [dm3] 3L_12859620_SNP [dm6]	C	G	6.194e^-6	0.607	NON_SYNONYMOUS_CODING CG32107
X	12220236	X_12220236_SNP [dm3] X_12326203_SNP [dm6]	C	T	6.380e^-6	0.607	INTRON Ten-a
2R	15783263	2R_15783263_SNP [dm3] 2R_19895758_SNP [dm6]	C	T	6.471e^-6	0.607	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	10267180	3L_10267180_SNP [dm3] 3L_10274080_SNP [dm6]	G	T	7.305e^-6	0.652	NON_SYNONYMOUS_CODING Or67d
2L	15641230	2L_15641230_SNP [dm3] 2L_15641230_SNP [dm6]	A	T	8.525e^-6	0.658	INTERGENIC
2R	7366501	2R_7366501_SNP [dm3] 2R_11478996_SNP [dm6]	G	A	8.849e^-6	0.658	INTRON inv	TF binding site BDTNP1_TFBS_dl
3L	10267179	3L_10267179_SNP [dm3] 3L_10274079_SNP [dm6]	G	T	9.200e^-6	0.658	NON_SYNONYMOUS_CODING Or67d
3R	21085305	3R_21085305_SNP [dm3] 3R_25259583_SNP [dm6]	C	T	9.202e^-6	0.658	SYNONYMOUS_CODING CG11857 DOWNSTREAM Nup358	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5437901	3L_5437901_SNP [dm3] 3L_5444801_SNP [dm6]	G	A	9.320e^-6	0.658	INTERGENIC
3R	25221542	3R_25221542_SNP [dm3] 3R_29395820_SNP [dm6]	G	A	9.466e^-6	0.658	INTRON Ptp99A
3R	14342975	3R_14342975_SNP [dm3] 3R_18517253_SNP [dm6]	G	A	9.932e^-6	0.665	INTRON fru
3R	12798863	3R_12798863_SNP [dm3] 3R_16973141_SNP [dm6]	A	G	1.080e^-5	0.698	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	23911489	3R_23911489_SNP [dm3] 3R_28085767_SNP [dm6]	A	C	1.181e^-5	0.728	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi
X	15579895	X_15579895_SNP [dm3] X_15685862_SNP [dm6]	A	T	1.222e^-5	0.728	NON_SYNONYMOUS_CODING CG15599	TF binding site BDTNP1_TFBS_prd mE1_TFBS_sens
3R	23567387	3R_23567387_SNP [dm3] 3R_27741665_SNP [dm6]	A	G	1.287e^-5	0.728	INTRON Ets98B
3R	12397827	3R_12397827_SNP [dm3] 3R_16572105_SNP [dm6]	C	T	1.300e^-5	0.728	NON_SYNONYMOUS_CODING CG14891 DOWNSTREAM CG42342	TF binding site mE1_TFBS_sens
3R	7059551	3R_7059551_DEL [dm3] 3R_11233829_DEL [dm6]	ACACACA	A	1.320e^-5	0.728	INTRON Arfip	TF binding site mE1_TFBS_cad
2L	3004539	2L_3004539_SNP [dm3] 2L_3004539_SNP [dm6]	C	G	1.429e^-5	0.735	INTRON CG17265	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3L	18296807	3L_18296807_SNP [dm3] 3L_18303707_SNP [dm6]	A	G	1.576e^-5	0.735	SYNONYMOUS_CODING grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	18687667	3R_18687667_SNP [dm3] 3R_22861945_SNP [dm6]	A	G	1.595e^-5	0.735	INTERGENIC
3R	12798325	3R_12798325_SNP [dm3] 3R_16972603_SNP [dm6]	C	T	1.607e^-5	0.735	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4659205	2L_4659205_SNP [dm3] 2L_4659205_SNP [dm6]	T	G	1.655e^-5	0.735	INTERGENIC
3R	12800179	3R_12800179_SNP [dm3] 3R_16974457_SNP [dm6]	G	A	1.696e^-5	0.735	UPSTREAM VhaM9.7-d INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	25641019	3R_25641019_SNP [dm3] 3R_29815297_SNP [dm6]	A	G	1.707e^-5	0.735	SYNONYMOUS_CODING Vps16B DOWNSTREAM ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4683959	2L_4683959_SNP [dm3] 2L_4683959_SNP [dm6]	G	A	1.710e^-5	0.735	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8639953	2L_8639953_SNP [dm3] 2L_8639953_SNP [dm6]	A	G	1.724e^-5	0.735	INTRON Sema-1a	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	11345085	3L_11345085_SNP [dm3] 3L_11351985_SNP [dm6]	G	C	1.725e^-5	0.735	INTERGENIC
3R	14054537	3R_14054537_SNP [dm3] 3R_18228815_SNP [dm6]	T	C	1.853e^-5	0.735	DOWNSTREAM Mdh2 INTERGENIC
3R	12827097	3R_12827097_SNP [dm3] 3R_17001375_SNP [dm6]	A	G	1.884e^-5	0.735	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7039065	2R_7039065_SNP [dm3] 2R_11151560_SNP [dm6]	C	T	1.994e^-5	0.735	INTRON CG13229
3R	22084571	3R_22084571_SNP [dm3] 3R_26258849_SNP [dm6]	G	A	2.002e^-5	0.735	UPSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16436009	3L_16436009_SNP [dm3] 3L_16442909_SNP [dm6]	C	T	2.111e^-5	0.735	INTRON CG33158 & 1 other
2R	1092947	2R_1092947_SNP [dm3] 2R_5205442_SNP [dm6]	A	G	2.189e^-5	0.735	INTRON Nipped-A
2L	17467937	2L_17467937_SNP [dm3] 2L_17467937_SNP [dm6]	A	C	2.190e^-5	0.735	INTRON BicD	TF binding site mE1_TFBS_inv
3R	19691870	3R_19691870_SNP [dm3] 3R_23866148_SNP [dm6]	A	G	2.228e^-5	0.735	INTRON Pli	TF binding site BDTNP1_TFBS_dl
X	14523392	X_14523392_SNP [dm3] X_14629359_SNP [dm6]	A	T	2.249e^-5	0.735	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4623998	2R_4623998_DEL [dm3] 2R_8736493_DEL [dm6]	AA	G	2.253e^-5	0.735	UPSTREAM CG42615 INTRON CG8740
3R	27316346	3R_27316346_SNP [dm3] 3R_31490624_SNP [dm6]	C	T	2.262e^-5	0.735	UPSTREAM CR45572 INTERGENIC
2L	2994455	2L_2994455_SNP [dm3] 2L_2994455_SNP [dm6]	G	T	2.272e^-5	0.735	INTRON CG3558	TF binding site BDTNP1_TFBS_sna
3L	9816076	3L_9816076_SNP [dm3] 3L_9822976_SNP [dm6]	C	T	2.275e^-5	0.735	DOWNSTREAM Ilp5 INTRON CG43897
2R	15145286	2R_15145286_SNP [dm3] 2R_19257781_SNP [dm6]	T	G	2.338e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14666187	3L_14666187_SNP [dm3] 3L_14673087_SNP [dm6]	G	A	2.421e^-5	0.735	UTR_5_PRIME ome UPSTREAM CG43121 DOWNSTREAM tRNA:M3:70Fa	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14859736	3L_14859736_SNP [dm3] 3L_14866636_SNP [dm6]	T	C	2.465e^-5	0.735	SYNONYMOUS_CODING CG17839
2L	7070955	2L_7070955_SNP [dm3] 2L_7070955_SNP [dm6]	G	T	2.534e^-5	0.735	INTRON Pvf2	TF binding site mE1_TFBS_cad
3R	19147068	3R_19147068_SNP [dm3] 3R_23321346_SNP [dm6]	G	T	2.542e^-5	0.735	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11637298	3L_11637298_SNP [dm3] 3L_11644198_SNP [dm6]	T	C	2.575e^-5	0.735	NON_SYNONYMOUS_CODING CG6071
X	12220171	X_12220171_SNP [dm3] X_12326138_SNP [dm6]	A	C	2.668e^-5	0.735	INTRON Ten-a
3R	14959732	3R_14959732_SNP [dm3] 3R_19134010_SNP [dm6]	T	G	2.733e^-5	0.735	SYNONYMOUS_CODING Cyp12a5
X	10066928	X_10066928_SNP [dm3] X_10172895_SNP [dm6]	G	A	2.774e^-5	0.735	INTRON CG43902 & 1 other
3R	13937834	3R_13937834_SNP [dm3] 3R_18112112_SNP [dm6]	C	T	2.790e^-5	0.735	INTRON sr	TF binding site mE1_TFBS_HSA
3R	21533153	3R_21533153_SNP [dm3] 3R_25707431_SNP [dm6]	T	A	2.872e^-5	0.735	SYNONYMOUS_CODING LpR2 INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	19620722	2R_19620722_SNP [dm3] 2R_23733199_SNP [dm6]	T	C	2.875e^-5	0.735	UTR_3_PRIME Sesn DOWNSTREAM mir-4979 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14926445	3L_14926445_SNP [dm3] 3L_14933345_SNP [dm6]	G	A	2.889e^-5	0.735	INTRON DCX-EMAP
3R	18882288	3R_18882288_SNP [dm3] 3R_23056566_SNP [dm6]	G	A	2.961e^-5	0.735	INTRON CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14364898	3R_14364898_INS [dm3] 3R_18539176_INS [dm6]	A	ACCTTTCAT	2.968e^-5	0.735	INTRON fru
2R	15999431	2R_15999431_SNP [dm3] 2R_20111926_SNP [dm6]	T	C	2.983e^-5	0.735	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15644856	3R_15644856_SNP [dm3] 3R_19819134_SNP [dm6]	A	T	3.079e^-5	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9722580	3R_9722580_SNP [dm3] 3R_13896858_SNP [dm6]	G	T	3.104e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15644186	3R_15644186_SNP [dm3] 3R_19818464_SNP [dm6]	T	C	3.107e^-5	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	5388040	3L_5388040_INS [dm3] 3L_5394940_INS [dm6]	T	TAAT	3.115e^-5	0.735	INTERGENIC
3R	18779740	3R_18779740_SNP [dm3] 3R_22954018_SNP [dm6]	T	A	3.187e^-5	0.735	INTRON klg
3R	26038796	3R_26038796_SNP [dm3] 3R_30213074_SNP [dm6]	T	C	3.256e^-5	0.735	DOWNSTREAM CecB & 1 other EXON Cec2
2R	2852111	2R_2852111_SNP [dm3] 2R_6964606_SNP [dm6]	G	A	3.259e^-5	0.735	INTRON mim & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	12370358	3R_12370358_SNP [dm3] 3R_16544636_SNP [dm6]	T	A	3.289e^-5	0.735	INTRON CG42342	TF binding site BDTNP1_TFBS_da
X	5538276	X_5538276_SNP [dm3] X_5644243_SNP [dm6]	G	A	3.360e^-5	0.735	INTRON CG42492
3R	12360144	3R_12360144_SNP [dm3] 3R_16534422_SNP [dm6]	T	C	3.413e^-5	0.735	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26980216	3R_26980216_SNP [dm3] 3R_31154494_SNP [dm6]	C	A	3.472e^-5	0.735	INTRON Gycbeta100B
3L	12411573	3L_12411573_SNP [dm3] 3L_12418473_SNP [dm6]	A	G	3.532e^-5	0.735	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	19018025	3R_19018025_SNP [dm3] 3R_23192303_SNP [dm6]	G	T	3.745e^-5	0.735	INTRON cnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	12220280	X_12220280_SNP [dm3] X_12326247_SNP [dm6]	T	A	3.824e^-5	0.735	INTRON Ten-a
2R	2851580	2R_2851580_SNP [dm3] 2R_6964075_SNP [dm6]	G	A	3.914e^-5	0.735	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4659204	2L_4659204_SNP [dm3] 2L_4659204_SNP [dm6]	T	A	3.930e^-5	0.735	INTERGENIC
3R	14432061	3R_14432061_SNP [dm3] 3R_18606339_SNP [dm6]	C	A	3.983e^-5	0.735	INTRON qin & 1 other
2R	1111096	2R_1111096_SNP [dm3] 2R_5223591_SNP [dm6]	A	T	4.066e^-5	0.735	INTRON Nipped-A	TF binding site BDTNP1_TFBS_dl
3R	5965794	3R_5965794_SNP [dm3] 3R_10140072_SNP [dm6]	T	C	4.078e^-5	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26746465	3R_26746465_SNP [dm3] 3R_30920743_SNP [dm6]	A	G	4.095e^-5	0.735	UPSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	21401205	3R_21401205_SNP [dm3] 3R_25575483_SNP [dm6]	G	A	4.121e^-5	0.735	UPSTREAM msi INTRON msi
2L	1735417	2L_1735417_SNP [dm3] 2L_1735417_SNP [dm6]	G	A	4.137e^-5	0.735	INTRON CG17646
2R	2850872	2R_2850872_SNP [dm3] 2R_6963367_SNP [dm6]	C	T	4.169e^-5	0.735	INTRON mim & 1 other
3R	12832233	3R_12832233_SNP [dm3] 3R_17006511_SNP [dm6]	T	C	4.169e^-5	0.735	INTRON Irc
2R	9462616	2R_9462616_SNP [dm3] 2R_13575111_SNP [dm6]	T	A	4.173e^-5	0.735	UPSTREAM CG42808 EXON CR44365	TF binding site BDTNP1_TFBS_dl
3R	7059546	3R_7059546_DEL [dm3] 3R_11233824_DEL [dm6]	AA	A	4.181e^-5	0.735	INTRON Arfip	TF binding site mE1_TFBS_cad
3L	19304631	3L_19304631_SNP [dm3] 3L_19311531_SNP [dm6]	C	A	4.206e^-5	0.735	INTRON pip
3L	16337777	3L_16337777_SNP [dm3] 3L_16344677_SNP [dm6]	T	C	4.250e^-5	0.735	SYNONYMOUS_CODING CG4998	TF binding site mE1_TFBS_cad
3R	12832215	3R_12832215_SNP [dm3] 3R_17006493_SNP [dm6]	C	G	4.258e^-5	0.735	NON_SYNONYMOUS_CODING Irc
3R	15644194	3R_15644194_SNP [dm3] 3R_19818472_SNP [dm6]	G	T	4.350e^-5	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	12801507	3R_12801507_SNP [dm3] 3R_16975785_SNP [dm6]	T	G	4.378e^-5	0.735	DOWNSTREAM Actn3 & 1 other INTERGENIC
3L	14694762	3L_14694762_SNP [dm3] 3L_14701662_SNP [dm6]	T	C	4.388e^-5	0.735	NON_SYNONYMOUS_CODING CG17177 INTRON ome
3R	20353989	3R_20353989_SNP [dm3] 3R_24528267_SNP [dm6]	C	T	4.426e^-5	0.735	DOWNSTREAM CG13618 INTRON CG6607	TF binding site mE1_TFBS_cad
3L	6694619	3L_6694619_SNP [dm3] 3L_6701519_SNP [dm6]	T	A	4.442e^-5	0.735	INTRON SP1173
3R	5324296	3R_5324296_SNP [dm3] 3R_9498574_SNP [dm6]	T	A	4.466e^-5	0.735	UPSTREAM RhoL INTRON RhoL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	5897772	3L_5897772_SNP [dm3] 3L_5904672_SNP [dm6]	G	A	4.531e^-5	0.735	SYNONYMOUS_CODING CG10486 UTR_3_PRIME CG10486 UPSTREAM CG32413
3R	12828143	3R_12828143_SNP [dm3] 3R_17002421_SNP [dm6]	T	C	4.588e^-5	0.735	UPSTREAM Irc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8482438	2R_8482438_SNP [dm3] 2R_12594933_SNP [dm6]	G	A	4.630e^-5	0.735	INTRON Amph EXON CR43909
3R	12813089	3R_12813089_SNP [dm3] 3R_16987367_SNP [dm6]	G	A	4.658e^-5	0.735	UPSTREAM CG18622 INTRON CG18622
2R	16179002	2R_16179002_SNP [dm3] 2R_20291497_SNP [dm6]	T	C	4.668e^-5	0.735	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
X	14512568	X_14512568_SNP [dm3] X_14618535_SNP [dm6]	C	A	4.766e^-5	0.735	INTRON NetA
2L	1666208	2L_1666208_SNP [dm3] 2L_1666208_SNP [dm6]	C	T	4.798e^-5	0.735	INTRON chinmo
X	15368586	X_15368586_SNP [dm3] X_15474553_SNP [dm6]	A	C	4.823e^-5	0.735	INTRON CG9203	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Ubx
3R	18881992	3R_18881992_SNP [dm3] 3R_23056270_SNP [dm6]	G	A	4.863e^-5	0.735	START_GAINED CG17119 UTR_5_PRIME CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	4.922e^-5	0.735	INTRON eIF5B
3R	5980255	3R_5980255_SNP [dm3] 3R_10154533_SNP [dm6]	C	G	4.929e^-5	0.735	INTRON Invadolysin
3L	10823423	3L_10823423_SNP [dm3] 3L_10830323_SNP [dm6]	A	T	4.933e^-5	0.735	INTERGENIC
2R	6607533	2R_6607533_SNP [dm3] 2R_10720028_SNP [dm6]	C	T	4.957e^-5	0.735	SYNONYMOUS_CODING stan UTR_3_PRIME stan
3R	15736057	3R_15736057_SNP [dm3] 3R_19910335_SNP [dm6]	C	T	4.963e^-5	0.735	UPSTREAM RhoGAP92B & 1 other INTRON RhoGAP92B
3R	12828175	3R_12828175_SNP [dm3] 3R_17002453_SNP [dm6]	A	C	5.000e^-5	0.735	UPSTREAM Irc & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	19295627	3L_19295627_SNP [dm3] 3L_19302527_SNP [dm6]	G	C	5.043e^-5	0.735	UTR_3_PRIME pip INTRON pip	TF binding site mE1_TFBS_sens
3R	20353981	3R_20353981_SNP [dm3] 3R_24528259_SNP [dm6]	G	A	5.078e^-5	0.735	DOWNSTREAM CG13618 INTRON CG6607	TF binding site mE1_TFBS_cad
3L	1741408	3L_1741408_SNP [dm3] 3L_1741408_SNP [dm6]	C	T	5.090e^-5	0.735	UPSTREAM Gk INTRON Gk	TF binding site mE1_TFBS_cad
3R	22140023	3R_22140023_SNP [dm3] 3R_26314301_SNP [dm6]	G	T	5.110e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9769869	3R_9769869_SNP [dm3] 3R_13944147_SNP [dm6]	T	C	5.188e^-5	0.735	UPSTREAM Art9 DOWNSTREAM Art6 INTERGENIC	TF binding site mE1_TFBS_cad
3R	9914986	3R_9914986_SNP [dm3] 3R_14089264_SNP [dm6]	G	T	5.196e^-5	0.735	UPSTREAM Npc2b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
3L	19304658	3L_19304658_SNP [dm3] 3L_19311558_SNP [dm6]	C	T	5.204e^-5	0.735	INTRON pip
3R	9687975	3R_9687975_SNP [dm3] 3R_13862253_SNP [dm6]	C	A	5.288e^-5	0.735	INTERGENIC
3R	24272270	3R_24272270_SNP [dm3] 3R_28446548_SNP [dm6]	A	C	5.304e^-5	0.735	INTRON beat-VI
3R	12799990	3R_12799990_SNP [dm3] 3R_16974268_SNP [dm6]	T	A	5.352e^-5	0.735	UPSTREAM VhaM9.7-d INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22140378	3R_22140378_SNP [dm3] 3R_26314656_SNP [dm6]	A	T	5.359e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17606078	2L_17606078_SNP [dm3] 2L_17606078_SNP [dm6]	C	G	5.406e^-5	0.735	DOWNSTREAM CR44412 INTERGENIC
3R	12832005	3R_12832005_SNP [dm3] 3R_17006283_SNP [dm6]	C	A	5.528e^-5	0.735	SPLICE_SITE_REGION Irc INTRON Irc
3R	12832029	3R_12832029_SNP [dm3] 3R_17006307_SNP [dm6]	T	A	5.528e^-5	0.735	INTRON Irc
3R	12832033	3R_12832033_SNP [dm3] 3R_17006311_SNP [dm6]	G	A	5.528e^-5	0.735	INTRON Irc
3R	25523851	3R_25523851_SNP [dm3] 3R_29698129_SNP [dm6]	G	A	5.595e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6694613	3L_6694613_SNP [dm3] 3L_6701513_SNP [dm6]	C	T	5.614e^-5	0.735	INTRON SP1173
3R	27316282	3R_27316282_SNP [dm3] 3R_31490560_SNP [dm6]	A	C	5.694e^-5	0.735	UPSTREAM CR45572 INTERGENIC
2L	13140934	2L_13140934_SNP [dm3] 2L_13140934_SNP [dm6]	A	G	5.712e^-5	0.735	INTERGENIC
3R	26286637	3R_26286637_INS [dm3] 3R_30460915_INS [dm6]	A	ACTACTGTG	5.732e^-5	0.735	INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22132430	3R_22132430_SNP [dm3] 3R_26306708_SNP [dm6]	T	A	5.750e^-5	0.735	INTERGENIC
3L	19326589	3L_19326589_SNP [dm3] 3L_19333489_SNP [dm6]	C	T	5.849e^-5	0.735	INTRON pip
3L	10004732	3L_10004732_SNP [dm3] 3L_10011632_SNP [dm6]	A	T	5.871e^-5	0.735	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13471833	3R_13471833_DEL [dm3] 3R_17646111_DEL [dm6]	GTTTCAAAGCATCACGCCG...	G	5.896e^-5	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	9722502	3R_9722502_SNP [dm3] 3R_13896780_SNP [dm6]	C	T	5.912e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3391241	2L_3391241_SNP [dm3] 2L_3391241_SNP [dm6]	T	C	6.005e^-5	0.735	INTERGENIC
3R	15599531	3R_15599531_INS [dm3] 3R_19773809_INS [dm6]	A	AC	6.010e^-5	0.735	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
3L	19937672	3L_19937672_SNP [dm3] 3L_19944572_SNP [dm6]	T	G	6.084e^-5	0.735	INTRON Ac76E
3R	5970280	3R_5970280_SNP [dm3] 3R_10144558_SNP [dm6]	A	G	6.105e^-5	0.735	UPSTREAM Invadolysin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15599529	3R_15599529_SNP [dm3] 3R_19773807_SNP [dm6]	A	G	6.129e^-5	0.735	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
2R	16451834	2R_16451834_SNP [dm3] 2R_20564329_SNP [dm6]	G	T	6.156e^-5	0.735	SYNONYMOUS_CODING qsm
3L	12063851	3L_12063851_SNP [dm3] 3L_12070751_SNP [dm6]	G	T	6.164e^-5	0.735	INTRON Sema-5c
3L	14667232	3L_14667232_SNP [dm3] 3L_14674132_SNP [dm6]	A	G	6.237e^-5	0.735	UPSTREAM tRNA:M3:70Fb & 1 other DOWNSTREAM CG4914 INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA
2R	19187810	2R_19187810_SNP [dm3] 2R_23300287_SNP [dm6]	A	G	6.380e^-5	0.735	INTERGENIC
3R	7045147	3R_7045147_SNP [dm3] 3R_11219425_SNP [dm6]	A	G	6.438e^-5	0.735	NON_SYNONYMOUS_CODING CG6689 DOWNSTREAM CG6693	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	2305315	3L_2305315_SNP [dm3] 3L_2305315_SNP [dm6]	A	G	6.476e^-5	0.735	INTERGENIC
X	6833253	X_6833253_SNP [dm3] X_6939220_SNP [dm6]	C	T	6.478e^-5	0.735	INTRON CG14431
3L	10267208	3L_10267208_SNP [dm3] 3L_10274108_SNP [dm6]	A	T	6.481e^-5	0.735	INTRON Or67d
3R	12831638	3R_12831638_SNP [dm3] 3R_17005916_SNP [dm6]	C	A	6.624e^-5	0.735	SYNONYMOUS_CODING Irc
3R	12806674	3R_12806674_SNP [dm3] 3R_16980952_SNP [dm6]	A	G	6.631e^-5	0.735	INTRON Ahcy89E
3R	12328226	3R_12328226_SNP [dm3] 3R_16502504_SNP [dm6]	C	T	6.669e^-5	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13932249	X_13932249_SNP [dm3] X_14038216_SNP [dm6]	A	G	6.758e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27001617	3R_27001617_SNP [dm3] 3R_31175895_SNP [dm6]	C	G	6.763e^-5	0.735	INTRON Gycbeta100B
3L	10965318	3L_10965318_SNP [dm3] 3L_10972218_SNP [dm6]	T	G	6.810e^-5	0.735	UPSTREAM CG14147 INTERGENIC
2L	20636308	2L_20636308_SNP [dm3] 2L_20636308_SNP [dm6]	A	G	6.824e^-5	0.735	INTERGENIC	transposable element FlyBase
3R	22541698	3R_22541698_SNP [dm3] 3R_26715976_SNP [dm6]	A	G	6.848e^-5	0.735	UTR_3_PRIME CG6425	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	21030279	3R_21030279_SNP [dm3] 3R_25204557_SNP [dm6]	A	T	6.855e^-5	0.735	INTRON CG13654 & 1 other	TF binding site mE1_TFBS_cad
X	13040584	X_13040584_SNP [dm3] X_13146551_SNP [dm6]	T	C	6.865e^-5	0.735	INTRON CG32645
3R	13471956	3R_13471956_SNP [dm3] 3R_17646234_SNP [dm6]	T	A	6.877e^-5	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12798845	3R_12798845_INS [dm3] 3R_16973123_INS [dm6]	T	TT	6.962e^-5	0.735	UPSTREAM Abd-B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3R	22093692	3R_22093692_SNP [dm3] 3R_26267970_SNP [dm6]	G	T	7.046e^-5	0.735	UPSTREAM CG6154 INTRON CG6154
3L	18296731	3L_18296731_SNP [dm3] 3L_18303631_SNP [dm6]	C	T	7.136e^-5	0.735	UTR_3_PRIME grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	8044259	2L_8044259_SNP [dm3] 2L_8044259_SNP [dm6]	A	T	7.189e^-5	0.735	INTRON CG7466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26373042	3R_26373042_SNP [dm3] 3R_30547320_SNP [dm6]	G	A	7.223e^-5	0.735	INTRON tmod
3L	18296810	3L_18296810_SNP [dm3] 3L_18303710_SNP [dm6]	C	A	7.258e^-5	0.735	SYNONYMOUS_CODING grim	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9686462	3R_9686462_DEL [dm3] 3R_13860740_DEL [dm6]	GT	G	7.294e^-5	0.735	INTERGENIC
2L	3577872	2L_3577872_DEL [dm3] 2L_3577872_DEL [dm6]	CTCAAACAAC	C	7.386e^-5	0.735	DOWNSTREAM sob INTERGENIC
X	16954828	X_16954828_SNP [dm3] X_17060795_SNP [dm6]	C	T	7.470e^-5	0.735	INTRON CG45002
3R	18986026	3R_18986026_SNP [dm3] 3R_23160304_SNP [dm6]	C	T	7.492e^-5	0.735	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC
3R	5965351	3R_5965351_SNP [dm3] 3R_10139629_SNP [dm6]	C	A	7.576e^-5	0.735	UTR_5_PRIME tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	18881832	3R_18881832_SNP [dm3] 3R_23056110_SNP [dm6]	C	T	7.614e^-5	0.735	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14601147	3R_14601147_DEL [dm3] 3R_18775425_DEL [dm6]	AATAATATGA	A	7.697e^-5	0.735	INTRON CG7720
3R	12801515	3R_12801515_SNP [dm3] 3R_16975793_SNP [dm6]	C	A	7.710e^-5	0.735	DOWNSTREAM Actn3 & 1 other INTERGENIC
3L	6252778	3L_6252778_SNP [dm3] 3L_6259678_SNP [dm6]	C	T	7.758e^-5	0.735	UTR_3_PRIME ImpL3 UPSTREAM CG10163
3R	22170297	3R_22170297_SNP [dm3] 3R_26344575_SNP [dm6]	A	G	7.787e^-5	0.735	NON_SYNONYMOUS_CODING CG6036 INTRON CG33970
3L	14669524	3L_14669524_SNP [dm3] 3L_14676424_SNP [dm6]	T	G	7.789e^-5	0.735	INTRON ome & 1 other
3R	26286638	3R_26286638_DEL [dm3] 3R_30460916_DEL [dm6]	TAGTACATA	T	7.822e^-5	0.735	INTRON CDase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	20438442	2R_20438442_SNP [dm3] 2R_24550919_SNP [dm6]	T	G	7.983e^-5	0.735	INTRON CG4622 & 1 other
3R	12813118	3R_12813118_SNP [dm3] 3R_16987396_SNP [dm6]	T	A	8.069e^-5	0.735	UPSTREAM CG18622 INTRON CG18622
X	13424855	X_13424855_SNP [dm3] X_13530822_SNP [dm6]	A	T	8.118e^-5	0.735	UPSTREAM CG44428 INTERGENIC
3L	12503722	3L_12503722_SNP [dm3] 3L_12510622_SNP [dm6]	T	C	8.168e^-5	0.735	SYNONYMOUS_CODING sti
3L	5194294	3L_5194294_SNP [dm3] 3L_5201194_SNP [dm6]	A	G	8.244e^-5	0.735	START_GAINED shep UTR_5_PRIME shep INTRON shep
3R	12328253	3R_12328253_SNP [dm3] 3R_16502531_SNP [dm6]	C	A	8.287e^-5	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12424254	3R_12424254_SNP [dm3] 3R_16598532_SNP [dm6]	A	C	8.357e^-5	0.735	INTRON CG10345
2L	5251728	2L_5251728_SNP [dm3] 2L_5251728_SNP [dm6]	A	T	8.363e^-5	0.735	INTRON tkv
2R	1114185	2R_1114185_SNP [dm3] 2R_5226680_SNP [dm6]	G	A	8.378e^-5	0.735	INTRON Nipped-A	transposable element FlyBase
2R	16394163	2R_16394163_SNP [dm3] 2R_20506658_SNP [dm6]	G	T	8.437e^-5	0.735	UPSTREAM CR44644 DOWNSTREAM Obp57a EXON CR44645
X	12220166	X_12220166_SNP [dm3] X_12326133_SNP [dm6]	T	G	8.439e^-5	0.735	INTRON Ten-a
X	11147920	X_11147920_INS [dm3] X_11253887_INS [dm6]	T	TT	8.492e^-5	0.735	INTRON CG44422
2R	16481630	2R_16481630_SNP [dm3] 2R_20594125_SNP [dm6]	C	A	8.501e^-5	0.735	INTRON bl
2L	6033356	2L_6033356_SNP [dm3] 2L_6033356_SNP [dm6]	T	A	8.510e^-5	0.735	NON_SYNONYMOUS_CODING CG9109	TF binding site mE1_TFBS_cad
3R	21068134	3R_21068134_SNP [dm3] 3R_25242412_SNP [dm6]	T	C	8.513e^-5	0.735	SYNONYMOUS_CODING CG11854 DOWNSTREAM to & 1 other
X	13040610	X_13040610_SNP [dm3] X_13146577_SNP [dm6]	G	A	8.519e^-5	0.735	INTRON CG32645
2L	1463852	2L_1463852_SNP [dm3] 2L_1463852_SNP [dm6]	T	A	8.621e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	1463853	2L_1463853_SNP [dm3] 2L_1463853_SNP [dm6]	T	C	8.621e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	14160217	2R_14160217_SNP [dm3] 2R_18272712_SNP [dm6]	A	T	8.646e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	19709313	X_19709313_SNP [dm3] X_19815280_SNP [dm6]	G	A	8.658e^-5	0.735	UPSTREAM skpC INTERGENIC
X	4564365	X_4564365_DEL [dm3] X_4670332_DEL [dm6]	CACGCAC	C	8.676e^-5	0.735	INTRON rap
3R	20559766	3R_20559766_SNP [dm3] 3R_24734044_SNP [dm6]	C	T	8.684e^-5	0.735	INTRON tok
3R	12831640	3R_12831640_SNP [dm3] 3R_17005918_SNP [dm6]	A	G	8.714e^-5	0.735	SYNONYMOUS_CODING Irc
2R	4107003	2R_4107003_SNP [dm3] 2R_8219498_SNP [dm6]	A	G	8.750e^-5	0.735	INTRON LRP1
3L	14667569	3L_14667569_SNP [dm3] 3L_14674469_SNP [dm6]	A	T	8.755e^-5	0.735	UPSTREAM tRNA:M3:70Fa DOWNSTREAM CG4914 & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	5026152	3R_5026152_SNP [dm3] 3R_9200430_SNP [dm6]	A	C	8.773e^-5	0.735	INTRON pum
3R	22507442	3R_22507442_SNP [dm3] 3R_26681720_SNP [dm6]	C	T	8.800e^-5	0.735	UTR_5_PRIME beat-VII
3R	12424249	3R_12424249_SNP [dm3] 3R_16598527_SNP [dm6]	C	T	8.801e^-5	0.735	INTRON CG10345
X	6833349	X_6833349_SNP [dm3] X_6939316_SNP [dm6]	A	G	9.041e^-5	0.735	INTRON CG14431
2R	17456116	2R_17456116_SNP [dm3] 2R_21568611_SNP [dm6]	A	G	9.069e^-5	0.735	INTRON CG10440	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	19179161	2R_19179161_SNP [dm3] 2R_23291638_SNP [dm6]	T	G	9.075e^-5	0.735	UPSTREAM CR44783 INTERGENIC
2R	4631880	2R_4631880_SNP [dm3] 2R_8744375_SNP [dm6]	C	T	9.082e^-5	0.735	INTRON CG8740 EXON CR44277
3R	17023753	3R_17023753_SNP [dm3] 3R_21198031_SNP [dm6]	G	T	9.138e^-5	0.735	INTRON SNF4Agamma
X	14512582	X_14512582_SNP [dm3] X_14618549_SNP [dm6]	C	T	9.234e^-5	0.735	INTRON NetA
3R	22416452	3R_22416452_SNP [dm3] 3R_26590730_SNP [dm6]	G	A	9.289e^-5	0.735	INTRON scrib
2R	4118436	2R_4118436_SNP [dm3] 2R_8230931_SNP [dm6]	T	A	9.355e^-5	0.735	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23907782	3R_23907782_SNP [dm3] 3R_28082060_SNP [dm6]	G	C	9.439e^-5	0.735	INTRON CG34362
2R	4108546	2R_4108546_SNP [dm3] 2R_8221041_SNP [dm6]	G	A	9.456e^-5	0.735	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1399880	2L_1399880_SNP [dm3] 2L_1399880_SNP [dm6]	T	C	9.468e^-5	0.735	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	4564518	X_4564518_SNP [dm3] X_4670485_SNP [dm6]	A	G	9.531e^-5	0.735	INTRON rap
3R	25260544	3R_25260544_SNP [dm3] 3R_29434822_SNP [dm6]	A	G	9.544e^-5	0.735	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10066977	X_10066977_SNP [dm3] X_10172944_SNP [dm6]	A	T	9.550e^-5	0.735	INTRON CG43902 & 1 other
3L	8766002	3L_8766002_SNP [dm3] 3L_8772902_SNP [dm6]	T	G	9.551e^-5	0.735	INTRON Fhos
2L	4889154	2L_4889154_SNP [dm3] 2L_4889154_SNP [dm6]	C	T	9.600e^-5	0.735	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1735438	2L_1735438_SNP [dm3] 2L_1735438_SNP [dm6]	C	T	9.701e^-5	0.735	INTRON CG17646
3L	11639223	3L_11639223_SNP [dm3] 3L_11646123_SNP [dm6]	G	C	9.791e^-5	0.735	UPSTREAM CG6071 DOWNSTREAM RIOK1 INTERGENIC
3R	19764484	3R_19764484_SNP [dm3] 3R_23938762_SNP [dm6]	A	G	9.801e^-5	0.735	UTR_5_PRIME Gdh INTRON Gdh	TF binding site mE1_TFBS_cad
3L	14665108	3L_14665108_SNP [dm3] 3L_14672008_SNP [dm6]	A	C	9.815e^-5	0.735	UTR_3_PRIME CG43121 UPSTREAM ome DOWNSTREAM dlp	TF binding site mE1_TFBS_bab1
3L	16355046	3L_16355046_SNP [dm3] 3L_16361946_SNP [dm6]	G	A	9.824e^-5	0.735	UPSTREAM Cpr72Ea & 1 other INTERGENIC
3L	13553054	3L_13553054_INS [dm3] 3L_13559954_INS [dm6]	C	CTAAC	9.832e^-5	0.735	INTRON bru-3
2L	18630849	2L_18630849_SNP [dm3] 2L_18630849_SNP [dm6]	T	A	9.848e^-5	0.735	INTRON MESR3
3R	17953441	3R_17953441_SNP [dm3] 3R_22127719_SNP [dm6]	G	C	9.896e^-5	0.735	INTRON CG42390
2L	13160317	2L_13160317_SNP [dm3] 2L_13160317_SNP [dm6]	A	C	9.939e^-5	0.735	UPSTREAM CG5204 DOWNSTREAM Pk34A INTERGENIC
3R	5965946	3R_5965946_SNP [dm3] 3R_10140224_SNP [dm6]	C	T	9.973e^-5	0.735	UTR_3_PRIME TAF1B UPSTREAM tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_Trl
2L	7068936	2L_7068936_SNP [dm3] 2L_7068936_SNP [dm6]	A	T	9.999e^-5	0.735	NON_SYNONYMOUS_CODING CG11289 DOWNSTREAM Pvf2	TF binding site mE1_TFBS_sens
3R	4673022	3R_4673022_SNP [dm3] 3R_8847300_SNP [dm6]	G	C	1.011e^-4	0.735	INTRON pyd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	7071139	2L_7071139_SNP [dm3] 2L_7071139_SNP [dm6]	A	G	1.011e^-4	0.735	INTRON Pvf2
2R	19616447	2R_19616447_SNP [dm3] 2R_23728924_SNP [dm6]	A	C	1.014e^-4	0.735	INTRON Sesn
3R	12837373	3R_12837373_SNP [dm3] 3R_17011651_SNP [dm6]	C	T	1.015e^-4	0.735	SYNONYMOUS_CODING CG8907	TF binding site mE1_TFBS_cad
3R	25742920	3R_25742920_SNP [dm3] 3R_29917198_SNP [dm6]	G	A	1.024e^-4	0.735	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3R	12808542	3R_12808542_SNP [dm3] 3R_16982820_SNP [dm6]	C	T	1.029e^-4	0.735	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26397091	3R_26397091_SNP [dm3] 3R_30571369_SNP [dm6]	G	T	1.035e^-4	0.735	SYNONYMOUS_CODING tmod INTRON tmod
3R	16937315	3R_16937315_SNP [dm3] 3R_21111593_SNP [dm6]	G	C	1.041e^-4	0.735	UTR_5_PRIME Rab11 DOWNSTREAM rtet INTRON Rab11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2R	1006333	2R_1006333_SNP [dm3] 2R_5118828_SNP [dm6]	T	C	1.055e^-4	0.735	INTRON gus
3L	10062952	3L_10062952_SNP [dm3] 3L_10069852_SNP [dm6]	G	A	1.061e^-4	0.735	INTRON dpr6	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12831005	3R_12831005_SNP [dm3] 3R_17005283_SNP [dm6]	C	T	1.064e^-4	0.735	NON_SYNONYMOUS_CODING Irc
2R	19618112	2R_19618112_SNP [dm3] 2R_23730589_SNP [dm6]	A	T	1.069e^-4	0.735	INTRON Sesn
3R	10288570	3R_10288570_INS [dm3] 3R_14462848_INS [dm6]	A	AA	1.076e^-4	0.735	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12394064	3R_12394064_SNP [dm3] 3R_16568342_SNP [dm6]	G	C	1.094e^-4	0.735	UTR_3_PRIME CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	23627502	3R_23627502_SNP [dm3] 3R_27801780_SNP [dm6]	T	G	1.097e^-4	0.735	INTRON CG34353
X	12550234	X_12550234_SNP [dm3] X_12656201_SNP [dm6]	C	T	1.097e^-4	0.735	INTRON CkIalpha
2R	17160702	2R_17160702_SNP [dm3] 2R_21273197_SNP [dm6]	A	G	1.099e^-4	0.735	INTRON Rgk3
3R	11115505	3R_11115505_SNP [dm3] 3R_15289783_SNP [dm6]	T	A	1.103e^-4	0.735	DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20360359	3R_20360359_SNP [dm3] 3R_24534637_SNP [dm6]	T	G	1.104e^-4	0.735	NON_SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_sens
3R	12783964	3R_12783964_SNP [dm3] 3R_16958242_SNP [dm6]	C	G	1.106e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3L	14666712	3L_14666712_SNP [dm3] 3L_14673612_SNP [dm6]	T	G	1.113e^-4	0.735	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21284069	3R_21284069_SNP [dm3] 3R_25458347_SNP [dm6]	T	G	1.116e^-4	0.735	INTRON Fur1
3L	14667594	3L_14667594_INS [dm3] 3L_14674494_INS [dm6]	A	ATTTGCA	1.120e^-4	0.735	UPSTREAM tRNA:M3:70Fa DOWNSTREAM CG4914 & 1 other INTRON ome	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3R	14411931	3R_14411931_SNP [dm3] 3R_18586209_SNP [dm6]	A	T	1.122e^-4	0.735	INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12328232	3R_12328232_SNP [dm3] 3R_16502510_SNP [dm6]	T	C	1.127e^-4	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12316367	3L_12316367_SNP [dm3] 3L_12323267_SNP [dm6]	A	T	1.127e^-4	0.735	INTERGENIC
3R	14409556	3R_14409556_SNP [dm3] 3R_18583834_SNP [dm6]	G	A	1.133e^-4	0.735	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12360170	3R_12360170_SNP [dm3] 3R_16534448_SNP [dm6]	G	A	1.135e^-4	0.735	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	20353980	3R_20353980_SNP [dm3] 3R_24528258_SNP [dm6]	G	T	1.137e^-4	0.735	DOWNSTREAM CG13618 INTRON CG6607	TF binding site mE1_TFBS_cad
3R	27075746	3R_27075746_SNP [dm3] 3R_31250024_SNP [dm6]	A	T	1.138e^-4	0.735	INTRON qless
2L	7070936	2L_7070936_SNP [dm3] 2L_7070936_SNP [dm6]	G	A	1.145e^-4	0.735	SYNONYMOUS_CODING Pvf2	TF binding site mE1_TFBS_cad
2L	5484892	2L_5484892_SNP [dm3] 2L_5484892_SNP [dm6]	G	A	1.147e^-4	0.735	INTERGENIC
3L	10931659	3L_10931659_SNP [dm3] 3L_10938559_SNP [dm6]	G	C	1.149e^-4	0.735	INTERGENIC
3R	22081511	3R_22081511_SNP [dm3] 3R_26255789_SNP [dm6]	A	G	1.151e^-4	0.735	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
3R	12799292	3R_12799292_SNP [dm3] 3R_16973570_SNP [dm6]	G	A	1.171e^-4	0.735	INTERGENIC
2R	18975147	2R_18975147_SNP [dm3] 2R_23087624_SNP [dm6]	A	G	1.176e^-4	0.735	NON_SYNONYMOUS_CODING CG13538
3L	9815242	3L_9815242_SNP [dm3] 3L_9822142_SNP [dm6]	G	A	1.183e^-4	0.735	INTRON CG43897
2R	1387589	2R_1387589_SNP [dm3] 2R_5500084_SNP [dm6]	G	A	1.186e^-4	0.735	INTRON CG30438
X	13040657	X_13040657_SNP [dm3] X_13146624_SNP [dm6]	A	G	1.189e^-4	0.735	INTRON CG32645
X	2948733	X_2948733_SNP [dm3] X_3054700_SNP [dm6]	A	G	1.195e^-4	0.735	INTRON kirre
2L	19696287	2L_19696287_SNP [dm3] 2L_19696287_SNP [dm6]	T	C	1.196e^-4	0.735	INTRON Lar
X	8437324	X_8437324_SNP [dm3] X_8543291_SNP [dm6]	C	T	1.200e^-4	0.735	INTRON Nrg
3R	11115220	3R_11115220_SNP [dm3] 3R_15289498_SNP [dm6]	C	T	1.205e^-4	0.735	DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	5068710	3L_5068710_SNP [dm3] 3L_5068710_SNP [dm6]	C	G	1.206e^-4	0.735	INTRON Con
2L	4675968	2L_4675968_SNP [dm3] 2L_4675968_SNP [dm6]	G	C	1.207e^-4	0.735	INTERGENIC
3R	13637036	3R_13637036_SNP [dm3] 3R_17811314_SNP [dm6]	G	A	1.213e^-4	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3L	12583096	3L_12583096_INS [dm3] 3L_12589996_INS [dm6]	T	TTT	1.220e^-4	0.735	INTRON ara	TF binding site BDTNP1_TFBS_twi
3R	5324264	3R_5324264_SNP [dm3] 3R_9498542_SNP [dm6]	A	T	1.223e^-4	0.735	UPSTREAM RhoL INTRON RhoL	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	5894907	2R_5894907_SNP [dm3] 2R_10007402_SNP [dm6]	C	G	1.227e^-4	0.735	INTRON Pka-R2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20359388	3R_20359388_SNP [dm3] 3R_24533666_SNP [dm6]	C	T	1.230e^-4	0.735	NON_SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_cad
3L	16536877	3L_16536877_SNP [dm3] 3L_16543777_SNP [dm6]	T	C	1.232e^-4	0.735	UPSTREAM CG43373 DOWNSTREAM CG13033 INTERGENIC
3L	14695153	3L_14695153_SNP [dm3] 3L_14702053_SNP [dm6]	C	T	1.234e^-4	0.735	UPSTREAM CG17177 INTRON ome
3R	20638221	3R_20638221_SNP [dm3] 3R_24812499_SNP [dm6]	T	G	1.248e^-4	0.735	INTRON CG5807	TF binding site mE1_TFBS_zfh1
3L	16350214	3L_16350214_SNP [dm3] 3L_16357114_SNP [dm6]	C	G	1.249e^-4	0.735	UPSTREAM CG45057 INTRON CG45057
2R	1393578	2R_1393578_SNP [dm3] 2R_5506073_SNP [dm6]	T	A	1.251e^-4	0.735	INTRON CG30438 & 1 other
3R	12783955	3R_12783955_SNP [dm3] 3R_16958233_SNP [dm6]	A	C	1.251e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	12812912	3R_12812912_SNP [dm3] 3R_16987190_SNP [dm6]	C	A	1.254e^-4	0.735	UPSTREAM CG18622 INTRON CG18622
2L	2538948	2L_2538948_SNP [dm3] 2L_2538948_SNP [dm6]	T	A	1.261e^-4	0.735	INTERGENIC
3L	10381019	3L_10381019_SNP [dm3] 3L_10387919_SNP [dm6]	G	A	1.265e^-4	0.735	DOWNSTREAM CR45245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	15588108	X_15588108_SNP [dm3] X_15694075_SNP [dm6]	A	G	1.270e^-4	0.735	UPSTREAM CR45526 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12776877	3R_12776877_SNP [dm3] 3R_16951155_SNP [dm6]	A	T	1.274e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	14431866	X_14431866_SNP [dm3] X_14537833_SNP [dm6]	A	C	1.285e^-4	0.735	INTERGENIC
3R	21067848	3R_21067848_SNP [dm3] 3R_25242126_SNP [dm6]	C	A	1.311e^-4	0.735	NON_SYNONYMOUS_CODING CG11854 SPLICE_SITE_REGION CG11854 DOWNSTREAM to & 1 other
2L	2093907	2L_2093907_INS [dm3] 2L_2093907_INS [dm6]	A	AA	1.322e^-4	0.735	INTRON dpr3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13668527	3R_13668527_SNP [dm3] 3R_17842805_SNP [dm6]	G	A	1.329e^-4	0.735	INTRON tinc
3R	6396582	3R_6396582_SNP [dm3] 3R_10570860_SNP [dm6]	A	G	1.332e^-4	0.735	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	12801288	3R_12801288_SNP [dm3] 3R_16975566_SNP [dm6]	A	G	1.333e^-4	0.735	UTR_3_PRIME VhaM9.7-d DOWNSTREAM Actn3	TF binding site mE1_TFBS_HSA
2R	12225273	2R_12225273_SNP [dm3] 2R_16337768_SNP [dm6]	A	G	1.334e^-4	0.735	UPSTREAM Hmgs INTRON Hmgs
3R	25742646	3R_25742646_SNP [dm3] 3R_29916924_SNP [dm6]	G	A	1.339e^-4	0.735	INTRON trp
3L	14664980	3L_14664980_SNP [dm3] 3L_14671880_SNP [dm6]	G	A	1.341e^-4	0.735	UPSTREAM ome DOWNSTREAM CG43121 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13471470	3R_13471470_DEL [dm3] 3R_17645748_DEL [dm6]	TTGTATATTTTTGAACAGAG...	CTTTTAAA	1.346e^-4	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	17080807	3R_17080807_SNP [dm3] 3R_21255085_SNP [dm6]	G	T	1.352e^-4	0.735	INTRON ETHR
2L	3283035	2L_3283035_SNP [dm3] 2L_3283035_SNP [dm6]	G	A	1.357e^-4	0.735	INTERGENIC
3R	13937211	3R_13937211_SNP [dm3] 3R_18111489_SNP [dm6]	T	C	1.359e^-4	0.735	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12328247	3R_12328247_SNP [dm3] 3R_16502525_SNP [dm6]	T	A	1.363e^-4	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7069911	3L_7069911_SNP [dm3] 3L_7076811_SNP [dm6]	A	T	1.374e^-4	0.735	INTRON CG8641
3L	20554501	3L_20554501_SNP [dm3] 3L_20561401_SNP [dm6]	A	T	1.375e^-4	0.735	INTERGENIC
3R	21430560	3R_21430560_DEL [dm3] 3R_25604838_DEL [dm6]	GGTTATTAGATCCTAACATT...	G	1.376e^-4	0.735	UTR_3_PRIME msi INTRON ymp
3L	19308687	3L_19308687_SNP [dm3] 3L_19315587_SNP [dm6]	A	C	1.383e^-4	0.735	INTRON pip	TF binding site BDTNP1_TFBS_da
2R	14160219	2R_14160219_SNP [dm3] 2R_18272714_SNP [dm6]	A	T	1.390e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	16891250	X_16891250_SNP [dm3] X_16997217_SNP [dm6]	A	G	1.392e^-4	0.735	INTRON CG45002
3L	5819000	3L_5819000_SNP [dm3] 3L_5825900_SNP [dm6]	T	C	1.399e^-4	0.735	INTRON vn
3R	13471913	3R_13471913_SNP [dm3] 3R_17646191_SNP [dm6]	T	C	1.402e^-4	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
4	1047278	4_1047278_SNP [dm3] 4_1026652_SNP [dm6]	G	C	1.406e^-4	0.735	INTRON PlexA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	14491291	3R_14491291_SNP [dm3] 3R_18665569_SNP [dm6]	C	T	1.415e^-4	0.735	NON_SYNONYMOUS_CODING CG31231 DOWNSTREAM Gos28	TF binding site mE1_TFBS_cad
3R	22088803	3R_22088803_SNP [dm3] 3R_26263081_SNP [dm6]	A	G	1.423e^-4	0.735	INTRON CG6154
3R	12832039	3R_12832039_SNP [dm3] 3R_17006317_SNP [dm6]	C	A	1.426e^-4	0.735	INTRON Irc
2R	1386475	2R_1386475_SNP [dm3] 2R_5498970_SNP [dm6]	A	T	1.434e^-4	0.735	INTRON CG30438
3R	26930100	3R_26930100_SNP [dm3] 3R_31104378_SNP [dm6]	G	A	1.443e^-4	0.735	INTERGENIC
3L	6694604	3L_6694604_SNP [dm3] 3L_6701504_SNP [dm6]	A	G	1.444e^-4	0.735	INTRON SP1173
3R	26991867	3R_26991867_SNP [dm3] 3R_31166145_SNP [dm6]	G	A	1.446e^-4	0.735	INTRON Gycbeta100B & 1 other
3L	14538264	3L_14538264_SNP [dm3] 3L_14545164_SNP [dm6]	G	A	1.454e^-4	0.735	INTRON CG9238	TF binding site BDTNP1_TFBS_z
3L	15170368	3L_15170368_INS [dm3] 3L_15177268_INS [dm6]	T	TT	1.462e^-4	0.735	INTERGENIC
3L	8394709	3L_8394709_SNP [dm3] 3L_8401609_SNP [dm6]	A	C	1.487e^-4	0.735	SYNONYMOUS_CODING CG7120 DOWNSTREAM mkg-p & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	25742689	3R_25742689_SNP [dm3] 3R_29916967_SNP [dm6]	G	A	1.491e^-4	0.735	SYNONYMOUS_CODING trp UTR_3_PRIME trp
2L	5117968	2L_5117968_SNP [dm3] 2L_5117968_SNP [dm6]	A	G	1.495e^-4	0.735	INTRON Msp300
3R	23627499	3R_23627499_SNP [dm3] 3R_27801777_SNP [dm6]	A	C	1.497e^-4	0.735	INTRON CG34353
3R	12780046	3R_12780046_SNP [dm3] 3R_16954324_SNP [dm6]	T	G	1.497e^-4	0.735	INTRON Abd-B	TF binding site mE1_TFBS_cad
X	6833373	X_6833373_SNP [dm3] X_6939340_SNP [dm6]	G	C	1.498e^-4	0.735	INTRON CG14431
3L	8089099	3L_8089099_SNP [dm3] 3L_8095999_SNP [dm6]	C	A	1.499e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
3R	22997258	3R_22997258_SNP [dm3] 3R_27171536_SNP [dm6]	C	T	1.516e^-4	0.735	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
3L	14670540	3L_14670540_SNP [dm3] 3L_14677440_SNP [dm6]	C	A	1.518e^-4	0.735	NON_SYNONYMOUS_CODING CG4914 INTRON ome
2L	17707051	2L_17707051_SNP [dm3] 2L_17707051_SNP [dm6]	A	T	1.521e^-4	0.735	DOWNSTREAM CG43231 INTRON CadN
3L	2684422	3L_2684422_SNP [dm3] 3L_2684422_SNP [dm6]	C	A	1.524e^-4	0.735	INTRON Fife
3L	14717842	3L_14717842_SNP [dm3] 3L_14724742_SNP [dm6]	C	T	1.525e^-4	0.735	INTRON ome
3R	12786997	3R_12786997_SNP [dm3] 3R_16961275_SNP [dm6]	T	A	1.525e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	2244943	2L_2244943_SNP [dm3] 2L_2244943_SNP [dm6]	C	G	1.528e^-4	0.735	UTR_3_PRIME CG4267 UPSTREAM CR42859 DOWNSTREAM CG4267
3L	19323490	3L_19323490_SNP [dm3] 3L_19330390_SNP [dm6]	A	T	1.530e^-4	0.735	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19696205	2R_19696205_SNP [dm3] 2R_23808682_SNP [dm6]	G	T	1.532e^-4	0.735	SYNONYMOUS_CODING Ssrp UPSTREAM CG5543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	10066814	X_10066814_SNP [dm3] X_10172781_SNP [dm6]	C	T	1.533e^-4	0.735	INTRON CG43902 & 1 other
X	9997863	X_9997863_SNP [dm3] X_10103830_SNP [dm6]	G	A	1.537e^-4	0.735	INTRON RhoU
2R	19230341	2R_19230341_SNP [dm3] 2R_23342818_SNP [dm6]	T	A	1.551e^-4	0.735	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8543987	3R_8543987_SNP [dm3] 3R_12718265_SNP [dm6]	G	A	1.553e^-4	0.735	INTRON Men
3R	11115174	3R_11115174_SNP [dm3] 3R_15289452_SNP [dm6]	C	T	1.561e^-4	0.735	DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	11115185	3R_11115185_SNP [dm3] 3R_15289463_SNP [dm6]	G	T	1.561e^-4	0.735	DOWNSTREAM CG45218 INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	1113741	2R_1113741_SNP [dm3] 2R_5226236_SNP [dm6]	A	G	1.571e^-4	0.735	INTRON Nipped-A
3R	13962434	3R_13962434_SNP [dm3] 3R_18136712_SNP [dm6]	T	C	1.571e^-4	0.735	INTERGENIC
2R	766763	2R_766763_SNP [dm3] 2R_4879258_SNP [dm6]	C	T	1.574e^-4	0.735	INTERGENIC	transposable element FlyBase
3R	12821834	3R_12821834_SNP [dm3] 3R_16996112_SNP [dm6]	C	T	1.574e^-4	0.735	UPSTREAM CG3534 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	13961115	2R_13961115_SNP [dm3] 2R_18073610_SNP [dm6]	C	T	1.576e^-4	0.735	UPSTREAM CR45022 INTRON CG34386
3R	14410079	3R_14410079_SNP [dm3] 3R_18584357_SNP [dm6]	T	G	1.577e^-4	0.735	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14050803	2L_14050803_SNP [dm3] 2L_14050803_SNP [dm6]	C	T	1.578e^-4	0.735	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	13254716	3L_13254716_DEL [dm3] 3L_13261616_DEL [dm6]	CAT	C	1.579e^-4	0.735	INTRON caps
2L	19403053	2L_19403053_SNP [dm3] 2L_19403053_SNP [dm6]	C	T	1.583e^-4	0.735	DOWNSTREAM Pax & 1 other INTRON Pax	TF binding site mE1_TFBS_chinmo mE1_TFBS_Kr
3R	23177900	3R_23177900_SNP [dm3] 3R_27352178_SNP [dm6]	G	T	1.589e^-4	0.735	INTRON CG42534
3L	19386874	3L_19386874_SNP [dm3] 3L_19393774_SNP [dm6]	A	T	1.601e^-4	0.735	INTRON CG32206
3L	19305928	3L_19305928_SNP [dm3] 3L_19312828_SNP [dm6]	G	A	1.607e^-4	0.735	INTRON pip	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	23483179	3R_23483179_SNP [dm3] 3R_27657457_SNP [dm6]	A	T	1.608e^-4	0.735	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
2R	19676351	2R_19676351_SNP [dm3] 2R_23788828_SNP [dm6]	G	A	1.608e^-4	0.735	INTRON CG9850
3R	13471671	3R_13471671_DEL [dm3] 3R_17645949_DEL [dm6]	AT	A	1.611e^-4	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	20502274	3R_20502274_SNP [dm3] 3R_24676552_SNP [dm6]	A	G	1.620e^-4	0.735	INTRON slo
X	13986527	X_13986527_MNP [dm3] X_14092494_MNP [dm6]	TGA	CAT	1.623e^-4	0.735	INTERGENIC
X	13986531	X_13986531_SNP [dm3] X_14092498_SNP [dm6]	T	C	1.623e^-4	0.735	INTERGENIC
3R	12812853	3R_12812853_SNP [dm3] 3R_16987131_SNP [dm6]	C	T	1.623e^-4	0.735	UPSTREAM CG18622 INTRON CG18622
2R	14667899	2R_14667899_SNP [dm3] 2R_18780394_SNP [dm6]	G	C	1.623e^-4	0.735	INTERGENIC
3L	14695095	3L_14695095_SNP [dm3] 3L_14701995_SNP [dm6]	C	A	1.627e^-4	0.735	UPSTREAM CG17177 INTRON ome
2L	16470902	2L_16470902_SNP [dm3] 2L_16470902_SNP [dm6]	A	C	1.631e^-4	0.735	INTRON dac	regulatory region REDfly_CRMs
3L	19298153	3L_19298153_SNP [dm3] 3L_19305053_SNP [dm6]	A	G	1.633e^-4	0.735	DOWNSTREAM pip INTRON pip
3L	16013819	3L_16013819_SNP [dm3] 3L_16020719_SNP [dm6]	T	A	1.636e^-4	0.735	EXON CR43949	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12806321	3R_12806321_SNP [dm3] 3R_16980599_SNP [dm6]	T	G	1.637e^-4	0.735	INTRON Ahcy89E
3R	21923631	3R_21923631_SNP [dm3] 3R_26097909_SNP [dm6]	G	A	1.639e^-4	0.735	INTRON dys	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc
2R	9462550	2R_9462550_SNP [dm3] 2R_13575045_SNP [dm6]	C	T	1.644e^-4	0.735	UPSTREAM CG42808 EXON CR44365	TF binding site BDTNP1_TFBS_dl
3L	16335469	3L_16335469_SNP [dm3] 3L_16342369_SNP [dm6]	C	A	1.645e^-4	0.735	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7047399	3R_7047399_SNP [dm3] 3R_11221677_SNP [dm6]	T	G	1.646e^-4	0.735	UPSTREAM RpL3 & 2 others DOWNSTREAM CR31144 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA
3R	13470919	3R_13470919_SNP [dm3] 3R_17645197_SNP [dm6]	G	T	1.649e^-4	0.735	UTR_3_PRIME CG43175 UPSTREAM tRNA:CR31578 DOWNSTREAM tRNA:CR31568	TF binding site mE1_TFBS_cad
3R	4610726	3R_4610726_SNP [dm3] 3R_8785004_SNP [dm6]	G	A	1.650e^-4	0.735	UPSTREAM Pif1A INTRON Pif1B & 1 other
3R	12834562	3R_12834562_SNP [dm3] 3R_17008840_SNP [dm6]	A	G	1.652e^-4	0.735	START_GAINED CG8907 UTR_5_PRIME CG8907 INTRON CG8907
2L	6834423	2L_6834423_SNP [dm3] 2L_6834423_SNP [dm6]	A	G	1.653e^-4	0.735	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	12811162	3R_12811162_SNP [dm3] 3R_16985440_SNP [dm6]	G	C	1.656e^-4	0.735	INTRON CG18622
3R	22092944	3R_22092944_SNP [dm3] 3R_26267222_SNP [dm6]	A	G	1.663e^-4	0.735	INTRON CG6154
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	1.665e^-4	0.735	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25845433	3R_25845433_SNP [dm3] 3R_30019711_SNP [dm6]	C	T	1.669e^-4	0.735	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
3L	9252877	3L_9252877_SNP [dm3] 3L_9259777_SNP [dm6]	T	C	1.670e^-4	0.735	INTRON GluRIB
3R	4905328	3R_4905328_SNP [dm3] 3R_9079606_SNP [dm6]	T	G	1.670e^-4	0.735	INTRON pum
3R	12826863	3R_12826863_SNP [dm3] 3R_17001141_SNP [dm6]	T	A	1.678e^-4	0.735	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	6608655	2L_6608655_SNP [dm3] 2L_6608655_SNP [dm6]	A	T	1.680e^-4	0.735	INTERGENIC
2R	19881135	2R_19881135_DEL [dm3] 2R_23993612_DEL [dm6]	TG	T	1.684e^-4	0.735	UPSTREAM mir-1009 INTRON CG3860
2R	19256876	2R_19256876_SNP [dm3] 2R_23369353_SNP [dm6]	C	T	1.684e^-4	0.735	SYNONYMOUS_CODING Ice1	TF binding site mE1_TFBS_cad
3R	9999212	3R_9999212_SNP [dm3] 3R_14173490_SNP [dm6]	G	T	1.687e^-4	0.735	UTR_3_PRIME Dop1R1
3R	20373574	3R_20373574_SNP [dm3] 3R_24547852_SNP [dm6]	T	G	1.689e^-4	0.735	INTRON Esyt2	TF binding site mE1_TFBS_bab1
3R	25742643	3R_25742643_SNP [dm3] 3R_29916921_SNP [dm6]	A	G	1.699e^-4	0.735	INTRON trp
2L	2538503	2L_2538503_SNP [dm3] 2L_2538503_SNP [dm6]	T	A	1.711e^-4	0.735	INTERGENIC
2L	10049241	2L_10049241_SNP [dm3] 2L_10049241_SNP [dm6]	C	T	1.711e^-4	0.735	UPSTREAM CG33301 INTERGENIC
X	12550252	X_12550252_SNP [dm3] X_12656219_SNP [dm6]	T	C	1.713e^-4	0.735	INTRON CkIalpha
X	12550253	X_12550253_INS [dm3] X_12656220_INS [dm6]	G	GCAGTGTTGCGTTACCATAT...	1.713e^-4	0.735	INTRON CkIalpha
3L	3534866	3L_3534866_SNP [dm3] 3L_3534866_SNP [dm6]	G	C	1.713e^-4	0.735	INTRON Eip63E
2R	10828394	2R_10828394_SNP [dm3] 2R_14940889_SNP [dm6]	A	T	1.715e^-4	0.735	DOWNSTREAM Lap1 INTERGENIC
2L	8534230	2L_8534230_SNP [dm3] 2L_8534230_SNP [dm6]	A	G	1.715e^-4	0.735	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
X	15368565	X_15368565_SNP [dm3] X_15474532_SNP [dm6]	G	T	1.715e^-4	0.735	INTRON CG9203	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_Ubx
3R	23345915	3R_23345915_SNP [dm3] 3R_27520193_SNP [dm6]	A	G	1.716e^-4	0.735	UPSTREAM CG12885 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	13637022	3R_13637022_SNP [dm3] 3R_17811300_SNP [dm6]	A	C	1.716e^-4	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	11090263	3R_11090263_SNP [dm3] 3R_15264541_SNP [dm6]	G	T	1.724e^-4	0.735	SPLICE_SITE_REGION Set SYNONYMOUS_CODING Set	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	14133450	3R_14133450_SNP [dm3] 3R_18307728_SNP [dm6]	A	G	1.729e^-4	0.735	INTRON PKD	TF binding site mE1_TFBS_HSA
X	8758556	X_8758556_SNP [dm3] X_8864523_SNP [dm6]	C	A	1.730e^-4	0.735	INTRON CG12075
3R	12831106	3R_12831106_SNP [dm3] 3R_17005384_SNP [dm6]	A	C	1.736e^-4	0.735	INTRON Irc
2L	17374696	2L_17374696_SNP [dm3] 2L_17374696_SNP [dm6]	G	T	1.739e^-4	0.735	SYNONYMOUS_CODING Lrch	TF binding site mE1_TFBS_cad
2L	6608525	2L_6608525_SNP [dm3] 2L_6608525_SNP [dm6]	T	A	1.740e^-4	0.735	INTERGENIC
2R	8482134	2R_8482134_SNP [dm3] 2R_12594629_SNP [dm6]	A	G	1.743e^-4	0.735	UPSTREAM CR45279 INTRON Amph EXON CR43909	TF binding site BDTNP1_TFBS_dl
3R	6943487	3R_6943487_SNP [dm3] 3R_11117765_SNP [dm6]	A	G	1.743e^-4	0.735	INTERGENIC
2R	19618202	2R_19618202_SNP [dm3] 2R_23730679_SNP [dm6]	C	T	1.746e^-4	0.735	INTRON Sesn
3L	16336798	3L_16336798_INS [dm3] 3L_16343698_INS [dm6]	T	TGCCATTAGGAAA...	1.747e^-4	0.735	INTRON CG4998	TF binding site mE1_TFBS_cad
3R	12785585	3R_12785585_SNP [dm3] 3R_16959863_SNP [dm6]	C	G	1.747e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16335395	3L_16335395_SNP [dm3] 3L_16342295_SNP [dm6]	C	A	1.752e^-4	0.735	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	5376062	3R_5376062_SNP [dm3] 3R_9550340_SNP [dm6]	C	A	1.753e^-4	0.735	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5181777	3L_5181777_SNP [dm3] 3L_5188677_SNP [dm6]	C	G	1.770e^-4	0.735	INTRON shep	TF binding site BDTNP1_TFBS_twi
3L	2578238	3L_2578238_SNP [dm3] 3L_2578238_SNP [dm6]	A	C	1.772e^-4	0.735	INTRON msn
2L	5742791	2L_5742791_SNP [dm3] 2L_5742791_SNP [dm6]	A	G	1.776e^-4	0.735	INTRON CG11030
2L	7068643	2L_7068643_SNP [dm3] 2L_7068643_SNP [dm6]	G	T	1.779e^-4	0.735	DOWNSTREAM Pvf2 INTRON CG11289	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19311012	3L_19311012_SNP [dm3] 3L_19317912_SNP [dm6]	C	G	1.785e^-4	0.735	INTRON pip
3R	25845467	3R_25845467_INS [dm3] 3R_30019745_INS [dm6]	G	GCT	1.799e^-4	0.735	INTRON Mgat2	TF binding site mE1_TFBS_chinmo
3L	9876156	3L_9876156_SNP [dm3] 3L_9883056_SNP [dm6]	C	G	1.799e^-4	0.735	NON_SYNONYMOUS_CODING CG34382	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25742654	3R_25742654_SNP [dm3] 3R_29916932_SNP [dm6]	G	C	1.801e^-4	0.735	INTRON trp
2R	19674764	2R_19674764_SNP [dm3] 2R_23787241_SNP [dm6]	C	A	1.803e^-4	0.735	INTRON CG9850
3R	12786757	3R_12786757_SNP [dm3] 3R_16961035_SNP [dm6]	C	T	1.806e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	15485612	2L_15485612_SNP [dm3] 2L_15485612_SNP [dm6]	A	T	1.809e^-4	0.735	DOWNSTREAM CR45293 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10172960	3R_10172960_INS [dm3] 3R_14347238_INS [dm6]	T	TTG	1.809e^-4	0.735	INTRON NK7.1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2323525	2L_2323525_SNP [dm3] 2L_2323525_SNP [dm6]	C	A	1.811e^-4	0.735	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3R	18234102	3R_18234102_SNP [dm3] 3R_22408380_SNP [dm6]	C	T	1.811e^-4	0.735	SYNONYMOUS_CODING CG13855 DOWNSTREAM CG13850
3R	21284045	3R_21284045_SNP [dm3] 3R_25458323_SNP [dm6]	T	G	1.818e^-4	0.735	INTRON Fur1
3R	22092990	3R_22092990_SNP [dm3] 3R_26267268_SNP [dm6]	G	A	1.819e^-4	0.735	INTRON CG6154
3R	12834939	3R_12834939_SNP [dm3] 3R_17009217_SNP [dm6]	T	G	1.827e^-4	0.735	INTRON CG8907
X	12154891	X_12154891_SNP [dm3] X_12260858_SNP [dm6]	C	T	1.834e^-4	0.735	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12550242	X_12550242_INS [dm3] X_12656209_INS [dm6]	T	TGGCTTGATAATGCACACG...	1.834e^-4	0.735	INTRON CkIalpha
3L	12726317	3L_12726317_INS [dm3] 3L_12733217_INS [dm6]	T	TGGGTTCTCAT...	1.836e^-4	0.735	DOWNSTREAM SmD1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2639163	3L_2639163_SNP [dm3] 3L_2639163_SNP [dm6]	G	A	1.837e^-4	0.735	SYNONYMOUS_CODING MEP-1 UTR_3_PRIME CG42245	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	16460098	2R_16460098_SNP [dm3] 2R_20572593_SNP [dm6]	T	A	1.839e^-4	0.735	INTRON qsm
3L	9691512	3L_9691512_DEL [dm3] 3L_9698412_DEL [dm6]	TAAT	T	1.842e^-4	0.735	UTR_5_PRIME UbcD4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	5223908	3R_5223908_SNP [dm3] 3R_9398186_SNP [dm6]	C	T	1.845e^-4	0.735	UPSTREAM Or85f INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11575711	2R_11575711_SNP [dm3] 2R_15688206_SNP [dm6]	G	T	1.848e^-4	0.735	NON_SYNONYMOUS_CODING Cep89 SPLICE_SITE_REGION Cep89 DOWNSTREAM Ranbp11	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12779278	3R_12779278_SNP [dm3] 3R_16953556_SNP [dm6]	C	T	1.851e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8581784	3L_8581784_SNP [dm3] 3L_8588684_SNP [dm6]	T	C	1.852e^-4	0.735	SYNONYMOUS_CODING CG43078	TF binding site mE1_TFBS_chinmo
3R	5378286	3R_5378286_SNP [dm3] 3R_9552564_SNP [dm6]	T	A	1.861e^-4	0.735	UPSTREAM CR42549 & 1 other INTRON RnpS1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11974712	2R_11974712_SNP [dm3] 2R_16087207_SNP [dm6]	A	C	1.864e^-4	0.735	SYNONYMOUS_CODING Dg INTRON Dg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	20353191	3R_20353191_INS [dm3] 3R_24527469_INS [dm6]	A	AA	1.864e^-4	0.735	UTR_3_PRIME CG13618 UPSTREAM CG6607
3R	12806409	3R_12806409_SNP [dm3] 3R_16980687_SNP [dm6]	G	C	1.872e^-4	0.735	INTRON Ahcy89E
2R	13385702	2R_13385702_SNP [dm3] 2R_17498197_SNP [dm6]	A	T	1.879e^-4	0.735	INTERGENIC
3L	19204498	3L_19204498_SNP [dm3] 3L_19211398_SNP [dm6]	C	T	1.879e^-4	0.735	INTRON fz2	TF binding site mE1_TFBS_Kr
2L	17091801	2L_17091801_DEL [dm3] 2L_17091801_DEL [dm6]	AA	A	1.895e^-4	0.735	INTERGENIC
2L	19696347	2L_19696347_SNP [dm3] 2L_19696347_SNP [dm6]	C	A	1.896e^-4	0.735	INTRON Lar
3R	6608465	3R_6608465_SNP [dm3] 3R_10782743_SNP [dm6]	C	T	1.898e^-4	0.735	NON_SYNONYMOUS_CODING mRpL37 UPSTREAM CG42633
2L	7068435	2L_7068435_SNP [dm3] 2L_7068435_SNP [dm6]	G	T	1.910e^-4	0.735	SYNONYMOUS_CODING CG11289	TF binding site mE1_TFBS_sens
2R	7860454	2R_7860454_SNP [dm3] 2R_11972949_SNP [dm6]	T	C	1.913e^-4	0.735	SYNONYMOUS_CODING CG8290	TF binding site mE1_TFBS_cad
2R	17160710	2R_17160710_SNP [dm3] 2R_21273205_SNP [dm6]	A	G	1.919e^-4	0.735	INTRON Rgk3
3L	14695165	3L_14695165_SNP [dm3] 3L_14702065_SNP [dm6]	A	C	1.926e^-4	0.735	UPSTREAM CG17177 INTRON ome
3R	12824985	3R_12824985_SNP [dm3] 3R_16999263_SNP [dm6]	T	C	1.930e^-4	0.735	SYNONYMOUS_CODING CG3534 DOWNSTREAM CG16941
3R	6992369	3R_6992369_SNP [dm3] 3R_11166647_SNP [dm6]	T	C	1.937e^-4	0.735	SYNONYMOUS_CODING Ugt86De UPSTREAM Ugt86Dg
2R	12879250	2R_12879250_SNP [dm3] 2R_16991745_SNP [dm6]	G	T	1.939e^-4	0.735	INTRON Cbp53E
X	14523866	X_14523866_INS [dm3] X_14629833_INS [dm6]	G	GTGGGACATACGGACAG...	1.939e^-4	0.735	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8648497	3L_8648497_INS [dm3] 3L_8655397_INS [dm6]	T	TTGT	1.939e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad
3R	5966322	3R_5966322_SNP [dm3] 3R_10140600_SNP [dm6]	T	C	1.944e^-4	0.735	UTR_3_PRIME TAF1B UPSTREAM tws	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8534236	2L_8534236_SNP [dm3] 2L_8534236_SNP [dm6]	T	C	1.945e^-4	0.735	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
2L	15641349	2L_15641349_SNP [dm3] 2L_15641349_SNP [dm6]	G	T	1.953e^-4	0.735	INTERGENIC
3R	8184983	3R_8184983_SNP [dm3] 3R_12359261_SNP [dm6]	A	T	1.955e^-4	0.735	UPSTREAM CG4115 INTERGENIC
2R	5858102	2R_5858102_SNP [dm3] 2R_9970597_SNP [dm6]	A	T	1.965e^-4	0.735	UTR_3_PRIME Adam UPSTREAM CG12134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	11089703	3R_11089703_SNP [dm3] 3R_15263981_SNP [dm6]	C	G	1.965e^-4	0.735	UPSTREAM Su_var_3-9 & 1 other INTRON Set	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
2L	16540938	2L_16540938_SNP [dm3] 2L_16540938_SNP [dm6]	A	G	1.968e^-4	0.735	INTERGENIC
2L	6514429	2L_6514429_SNP [dm3] 2L_6514429_SNP [dm6]	G	C	1.972e^-4	0.735	INTRON CG31637
3R	25074681	3R_25074681_SNP [dm3] 3R_29248959_SNP [dm6]	C	G	1.972e^-4	0.735	UPSTREAM SP1029 INTRON SP1029
2L	2576954	2L_2576954_SNP [dm3] 2L_2576954_SNP [dm6]	T	A	1.977e^-4	0.735	UTR_5_PRIME insv UPSTREAM insv & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	20318594	3R_20318594_SNP [dm3] 3R_24492872_SNP [dm6]	T	G	1.981e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3R	18337632	3R_18337632_SNP [dm3] 3R_22511910_SNP [dm6]	T	C	1.982e^-4	0.735	INTRON Octbeta1R	regulatory region REDfly_CRMs
X	12550247	X_12550247_SNP [dm3] X_12656214_SNP [dm6]	G	A	1.990e^-4	0.735	INTRON CkIalpha
3R	26795888	3R_26795888_SNP [dm3] 3R_30970166_SNP [dm6]	A	G	1.990e^-4	0.735	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5538348	X_5538348_SNP [dm3] X_5644315_SNP [dm6]	C	T	2.000e^-4	0.735	INTRON CG42492
3R	23570618	3R_23570618_SNP [dm3] 3R_27744896_SNP [dm6]	G	A	2.006e^-4	0.735	INTRON Ets98B
2R	19616449	2R_19616449_SNP [dm3] 2R_23728926_SNP [dm6]	G	T	2.011e^-4	0.735	INTRON Sesn
3R	4905278	3R_4905278_SNP [dm3] 3R_9079556_SNP [dm6]	T	C	2.014e^-4	0.735	INTRON pum
3R	4905280	3R_4905280_SNP [dm3] 3R_9079558_SNP [dm6]	T	G	2.014e^-4	0.735	INTRON pum
3L	19386838	3L_19386838_SNP [dm3] 3L_19393738_SNP [dm6]	A	G	2.019e^-4	0.735	INTRON CG32206
3R	4905296	3R_4905296_SNP [dm3] 3R_9079574_SNP [dm6]	A	G	2.023e^-4	0.735	INTRON pum
2R	19187798	2R_19187798_SNP [dm3] 2R_23300275_SNP [dm6]	G	C	2.025e^-4	0.735	INTERGENIC
3R	20764452	3R_20764452_DEL [dm3] 3R_24938730_DEL [dm6]	TT	T	2.026e^-4	0.735	UTR_3_PRIME ssh UPSTREAM Osbp DOWNSTREAM ssh	TF binding site BDTNP1_TFBS_dl
3R	17080784	3R_17080784_SNP [dm3] 3R_21255062_SNP [dm6]	C	T	2.036e^-4	0.735	INTRON ETHR
3R	13471319	3R_13471319_SNP [dm3] 3R_17645597_SNP [dm6]	C	G	2.037e^-4	0.735	UPSTREAM tRNA:CR31578 & 2 others DOWNSTREAM CG43175 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	22180979	3R_22180979_SNP [dm3] 3R_26355257_SNP [dm6]	C	T	2.041e^-4	0.735	UPSTREAM CG33970 INTRON CG33970
X	7797412	X_7797412_SNP [dm3] X_7903379_SNP [dm6]	C	T	2.050e^-4	0.735	DOWNSTREAM dpr14 INTRON bys	TF binding site mE1_TFBS_sens
2L	13151492	2L_13151492_SNP [dm3] 2L_13151492_SNP [dm6]	T	C	2.052e^-4	0.735	INTERGENIC
2L	6514392	2L_6514392_SNP [dm3] 2L_6514392_SNP [dm6]	T	C	2.053e^-4	0.735	INTRON CG31637
X	12225261	X_12225261_SNP [dm3] X_12331228_SNP [dm6]	C	T	2.056e^-4	0.735	UTR_3_PRIME Ten-a
2R	17606847	2R_17606847_SNP [dm3] 2R_21719342_SNP [dm6]	G	A	2.060e^-4	0.735	SYNONYMOUS_CODING Tango11 DOWNSTREAM CG30398	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	16175647	3L_16175647_SNP [dm3] 3L_16182547_SNP [dm6]	T	C	2.061e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12827280	3R_12827280_SNP [dm3] 3R_17001558_SNP [dm6]	T	A	2.066e^-4	0.735	SYNONYMOUS_CODING CG16941	TF binding site mE1_TFBS_sens
3R	25668684	3R_25668684_SNP [dm3] 3R_29842962_SNP [dm6]	T	G	2.069e^-4	0.735	INTRON Cad99C
3R	13472202	3R_13472202_SNP [dm3] 3R_17646480_SNP [dm6]	A	G	2.077e^-4	0.735	DOWNSTREAM tRNA:CR31578 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	4762102	2L_4762102_SNP [dm3] 2L_4762102_SNP [dm6]	G	A	2.078e^-4	0.735	UPSTREAM CG42523 INTRON CG15630
3L	9815771	3L_9815771_SNP [dm3] 3L_9822671_SNP [dm6]	A	T	2.086e^-4	0.735	DOWNSTREAM Ilp5 INTRON CG43897
X	2978642	X_2978642_SNP [dm3] X_3084609_SNP [dm6]	T	C	2.095e^-4	0.735	INTRON kirre	TF binding site BDTNP1_TFBS_prd
3R	18506824	3R_18506824_SNP [dm3] 3R_22681102_SNP [dm6]	A	G	2.098e^-4	0.735	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	7664432	3R_7664432_SNP [dm3] 3R_11838710_SNP [dm6]	C	T	2.099e^-4	0.735	INTRON CG6959
3R	12831108	3R_12831108_SNP [dm3] 3R_17005386_SNP [dm6]	A	T	2.103e^-4	0.735	INTRON Irc
3R	22366722	3R_22366722_SNP [dm3] 3R_26541000_SNP [dm6]	G	T	2.105e^-4	0.735	INTRON scrib
3L	14665093	3L_14665093_SNP [dm3] 3L_14671993_SNP [dm6]	T	C	2.111e^-4	0.735	UTR_3_PRIME CG43121 UPSTREAM ome DOWNSTREAM dlp	TF binding site mE1_TFBS_bab1
3R	16812050	3R_16812050_SNP [dm3] 3R_20986328_SNP [dm6]	C	A	2.114e^-4	0.735	UTR_5_PRIME Calx DOWNSTREAM CG43446 INTRON Calx
3R	23483176	3R_23483176_SNP [dm3] 3R_27657454_SNP [dm6]	C	G	2.119e^-4	0.735	UTR_3_PRIME Mlc1 UPSTREAM tau DOWNSTREAM Mlc1
3R	21067901	3R_21067901_SNP [dm3] 3R_25242179_SNP [dm6]	A	T	2.122e^-4	0.735	DOWNSTREAM to & 1 other INTRON CG11854
3L	8765778	3L_8765778_SNP [dm3] 3L_8772678_SNP [dm6]	G	A	2.128e^-4	0.735	INTRON Fhos
3R	15644497	3R_15644497_SNP [dm3] 3R_19818775_SNP [dm6]	C	A	2.129e^-4	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1411505	3L_1411505_SNP [dm3] 3L_1411505_SNP [dm6]	A	C	2.131e^-4	0.735	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	10800271	3R_10800271_SNP [dm3] 3R_14974549_SNP [dm6]	G	C	2.136e^-4	0.735	INTERGENIC
3R	22141652	3R_22141652_SNP [dm3] 3R_26315930_SNP [dm6]	C	T	2.137e^-4	0.735	INTERGENIC
2R	11811174	2R_11811174_SNP [dm3] 2R_15923669_SNP [dm6]	G	A	2.146e^-4	0.735	SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
3R	15341382	3R_15341382_SNP [dm3] 3R_19515660_SNP [dm6]	T	C	2.147e^-4	0.735	INTRON Dys
2R	18943886	2R_18943886_SNP [dm3] 2R_23056363_SNP [dm6]	A	T	2.150e^-4	0.735	INTRON CG44252
3L	10761601	3L_10761601_INS [dm3] 3L_10768501_INS [dm6]	C	CC	2.157e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	11114951	3R_11114951_SNP [dm3] 3R_15289229_SNP [dm6]	T	C	2.164e^-4	0.735	SYNONYMOUS_CODING Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3R	5966158	3R_5966158_SNP [dm3] 3R_10140436_SNP [dm6]	A	G	2.165e^-4	0.735	UTR_3_PRIME TAF1B UPSTREAM tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_Trl
2R	15999413	2R_15999413_SNP [dm3] 2R_20111908_SNP [dm6]	C	T	2.168e^-4	0.735	SYNONYMOUS_CODING 18w	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13664001	3R_13664001_SNP [dm3] 3R_17838279_SNP [dm6]	G	A	2.168e^-4	0.735	INTRON tinc	TF binding site mE1_TFBS_inv
3R	6727178	3R_6727178_SNP [dm3] 3R_10901456_SNP [dm6]	C	T	2.170e^-4	0.735	INTERGENIC
X	6833322	X_6833322_SNP [dm3] X_6939289_SNP [dm6]	C	G	2.170e^-4	0.735	INTRON CG14431
2L	22558371	2L_22558371_SNP [dm3] 2L_22665639_SNP [dm6]	G	A	2.171e^-4	0.735	INTRON CG40006
3L	16350365	3L_16350365_SNP [dm3] 3L_16357265_SNP [dm6]	A	T	2.179e^-4	0.735	UPSTREAM CG45057 INTRON CG45057
2R	19665781	2R_19665781_SNP [dm3] 2R_23778258_SNP [dm6]	G	T	2.190e^-4	0.735	INTRON CG9850
3L	19300290	3L_19300290_SNP [dm3] 3L_19307190_SNP [dm6]	T	C	2.191e^-4	0.735	DOWNSTREAM pip INTRON pip
3R	11570542	3R_11570542_SNP [dm3] 3R_15744820_SNP [dm6]	C	T	2.197e^-4	0.735	SYNONYMOUS_CODING CG4520
3R	7048123	3R_7048123_INS [dm3] 3R_11222401_INS [dm6]	A	ATAA	2.200e^-4	0.735	UPSTREAM snoRNA:Me18S-C1096 & 2 others DOWNSTREAM CR31144 INTRON RpL3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	5980253	3R_5980253_SNP [dm3] 3R_10154531_SNP [dm6]	T	C	2.205e^-4	0.735	INTRON Invadolysin
2L	1735478	2L_1735478_SNP [dm3] 2L_1735478_SNP [dm6]	G	A	2.206e^-4	0.735	INTRON CG17646
3L	8165585	3L_8165585_SNP [dm3] 3L_8172485_SNP [dm6]	G	A	2.209e^-4	0.735	INTRON RecQ4	TF binding site BDTNP1_TFBS_twi
3L	14538279	3L_14538279_SNP [dm3] 3L_14545179_SNP [dm6]	G	T	2.209e^-4	0.735	INTRON CG9238	TF binding site BDTNP1_TFBS_z
2R	1435993	2R_1435993_SNP [dm3] 2R_5548488_SNP [dm6]	A	T	2.216e^-4	0.735	SYNONYMOUS_CODING CG30438
X	18396379	X_18396379_SNP [dm3] X_18502346_SNP [dm6]	A	G	2.217e^-4	0.735	NON_SYNONYMOUS_CODING Wnt5	TF binding site mE1_TFBS_cad
3R	5966410	3R_5966410_SNP [dm3] 3R_10140688_SNP [dm6]	G	T	2.226e^-4	0.735	UTR_3_PRIME TAF1B UPSTREAM tws	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	4957205	2L_4957205_SNP [dm3] 2L_4957205_SNP [dm6]	A	G	2.227e^-4	0.735	SYNONYMOUS_CODING Marcal1
3R	11113772	3R_11113772_SNP [dm3] 3R_15288050_SNP [dm6]	C	T	2.234e^-4	0.735	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	11113829	3R_11113829_SNP [dm3] 3R_15288107_SNP [dm6]	A	T	2.234e^-4	0.735	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	16872227	3L_16872227_SNP [dm3] 3L_16879127_SNP [dm6]	C	T	2.234e^-4	0.735	UTR_3_PRIME CG32170 INTRON Lmpt
X	14512563	X_14512563_SNP [dm3] X_14618530_SNP [dm6]	A	G	2.236e^-4	0.735	INTRON NetA
2R	4614782	2R_4614782_SNP [dm3] 2R_8727277_SNP [dm6]	C	T	2.243e^-4	0.735	SYNONYMOUS_CODING gcl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19304751	3L_19304751_SNP [dm3] 3L_19311651_SNP [dm6]	C	G	2.244e^-4	0.735	SYNONYMOUS_CODING pip INTRON pip
2L	15641190	2L_15641190_SNP [dm3] 2L_15641190_SNP [dm6]	T	G	2.248e^-4	0.735	INTERGENIC
3L	2432525	3L_2432525_SNP [dm3] 3L_2432525_SNP [dm6]	G	T	2.252e^-4	0.735	INTRON CG45186
2L	8673133	2L_8673133_SNP [dm3] 2L_8673133_SNP [dm6]	T	C	2.253e^-4	0.735	UTR_5_PRIME Glt UPSTREAM Glt	TF binding site mE1_TFBS_cad
3L	20356579	3L_20356579_SNP [dm3] 3L_20363479_SNP [dm6]	G	C	2.255e^-4	0.735	NON_SYNONYMOUS_CODING Toll-9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12324605	3L_12324605_SNP [dm3] 3L_12331505_SNP [dm6]	C	T	2.261e^-4	0.735	INTRON CG32105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26040443	3R_26040443_SNP [dm3] 3R_30214721_SNP [dm6]	A	G	2.276e^-4	0.735	UPSTREAM CecB INTERGENIC
3R	22760213	3R_22760213_SNP [dm3] 3R_26934491_SNP [dm6]	A	C	2.276e^-4	0.735	INTRON sda
3R	18178226	3R_18178226_SNP [dm3] 3R_22352504_SNP [dm6]	G	T	2.277e^-4	0.735	INTRON rdhB
2R	5863722	2R_5863722_SNP [dm3] 2R_9976217_SNP [dm6]	G	C	2.278e^-4	0.735	DOWNSTREAM CR43948 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1812188	X_1812188_SNP [dm3] X_1918155_SNP [dm6]	T	G	2.278e^-4	0.735	SYNONYMOUS_CODING mip130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	7071497	2L_7071497_SNP [dm3] 2L_7071497_SNP [dm6]	G	T	2.279e^-4	0.735	INTRON Pvf2
3L	14668574	3L_14668574_SNP [dm3] 3L_14675474_SNP [dm6]	T	A	2.284e^-4	0.735	INTRON ome & 1 other
3R	16932108	3R_16932108_SNP [dm3] 3R_21106386_SNP [dm6]	A	T	2.287e^-4	0.735	SYNONYMOUS_CODING Sec15	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8636963	2L_8636963_SNP [dm3] 2L_8636963_SNP [dm6]	A	G	2.296e^-4	0.735	INTRON Sema-1a
3R	11528217	3R_11528217_SNP [dm3] 3R_15702495_SNP [dm6]	C	T	2.304e^-4	0.735	INTERGENIC
3L	8192412	3L_8192412_SNP [dm3] 3L_8199312_SNP [dm6]	G	C	2.305e^-4	0.735	SYNONYMOUS_CODING CG8005 UTR_3_PRIME CG8005	TF binding site mE1_TFBS_sens
3L	7071286	3L_7071286_SNP [dm3] 3L_7078186_SNP [dm6]	T	G	2.309e^-4	0.735	UPSTREAM CG8641 INTERGENIC
3R	10163217	3R_10163217_SNP [dm3] 3R_14337495_SNP [dm6]	C	A	2.317e^-4	0.735	INTRON NK7.1
2L	1241905	2L_1241905_SNP [dm3] 2L_1241905_SNP [dm6]	T	C	2.322e^-4	0.735	SYNONYMOUS_CODING CG5397
3R	19264620	3R_19264620_SNP [dm3] 3R_23438898_SNP [dm6]	T	C	2.337e^-4	0.735	INTRON CG4374
X	19779389	X_19779389_INS [dm3] X_19885356_INS [dm6]	T	TTT	2.338e^-4	0.735	DOWNSTREAM amn INTRON Hers	TF binding site BDTNP1_TFBS_dl
3L	6088698	3L_6088698_DEL [dm3] 3L_6095598_DEL [dm6]	GT	G	2.339e^-4	0.735	UPSTREAM CG10467 INTRON loj
2R	10424396	2R_10424396_INS [dm3] 2R_14536891_INS [dm6]	T	TGAAAT	2.345e^-4	0.735	INTRON ttv
2R	13186187	2R_13186187_SNP [dm3] 2R_17298682_SNP [dm6]	A	G	2.347e^-4	0.735	INTRON mbl
2L	4200242	2L_4200242_SNP [dm3] 2L_4200242_SNP [dm6]	G	A	2.354e^-4	0.735	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3736450	2L_3736450_SNP [dm3] 2L_3736450_SNP [dm6]	C	A	2.355e^-4	0.735	INTRON CG10019
2R	6240050	2R_6240050_SNP [dm3] 2R_10352545_SNP [dm6]	G	A	2.364e^-4	0.735	SYNONYMOUS_CODING CG43178 UTR_3_PRIME CG43171 & 1 other UPSTREAM CG43172 & 2 others INTRON CG42732
2L	4200245	2L_4200245_SNP [dm3] 2L_4200245_SNP [dm6]	T	C	2.364e^-4	0.735	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7632932	2L_7632932_SNP [dm3] 2L_7632932_SNP [dm6]	A	T	2.365e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	17562984	3R_17562984_SNP [dm3] 3R_21737262_SNP [dm6]	T	A	2.367e^-4	0.735	NON_SYNONYMOUS_CODING CG42870 UPSTREAM Sfp93F & 1 other
3L	12181418	3L_12181418_SNP [dm3] 3L_12188318_SNP [dm6]	G	T	2.380e^-4	0.735	UPSTREAM Est-6 DOWNSTREAM CG6910 INTERGENIC	regulatory region REDfly_CRMs
3R	12806404	3R_12806404_SNP [dm3] 3R_16980682_SNP [dm6]	G	A	2.381e^-4	0.735	INTRON Ahcy89E
3L	14666932	3L_14666932_SNP [dm3] 3L_14673832_SNP [dm6]	T	C	2.382e^-4	0.735	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	11106783	3R_11106783_SNP [dm3] 3R_15281061_SNP [dm6]	T	G	2.383e^-4	0.735	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	4118379	2R_4118379_SNP [dm3] 2R_8230874_SNP [dm6]	C	T	2.386e^-4	0.735	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4905273	3R_4905273_SNP [dm3] 3R_9079551_SNP [dm6]	G	T	2.388e^-4	0.735	INTRON pum
3L	14695160	3L_14695160_SNP [dm3] 3L_14702060_SNP [dm6]	C	T	2.391e^-4	0.735	UPSTREAM CG17177 INTRON ome
X	13040684	X_13040684_DEL [dm3] X_13146651_DEL [dm6]	ATTCTGAATCAAAGTTTACT...	A	2.396e^-4	0.735	INTRON CG32645
3R	968557	3R_968557_SNP [dm3] 3R_5142835_SNP [dm6]	C	T	2.397e^-4	0.735	INTERGENIC
3L	19140648	3L_19140648_SNP [dm3] 3L_19147548_SNP [dm6]	C	G	2.400e^-4	0.735	UPSTREAM fz2 INTRON fz2
2R	5895735	2R_5895735_SNP [dm3] 2R_10008230_SNP [dm6]	G	A	2.404e^-4	0.735	INTRON Pka-R2
2R	5895733	2R_5895733_SNP [dm3] 2R_10008228_SNP [dm6]	T	C	2.404e^-4	0.735	INTRON Pka-R2
2L	5540115	2L_5540115_SNP [dm3] 2L_5540115_SNP [dm6]	A	G	2.411e^-4	0.735	SPLICE_SITE_REGION Hel25E UPSTREAM CG14015 INTRON Hel25E	TF binding site mE1_TFBS_sens
3R	3788119	3R_3788119_SNP [dm3] 3R_7962397_SNP [dm6]	A	C	2.411e^-4	0.735	UTR_5_PRIME dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl
2L	5485059	2L_5485059_SNP [dm3] 2L_5485059_SNP [dm6]	A	T	2.415e^-4	0.735	INTERGENIC
X	12226604	X_12226604_SNP [dm3] X_12332571_SNP [dm6]	G	T	2.417e^-4	0.735	UTR_3_PRIME Ten-a DOWNSTREAM Ten-a
3R	12786767	3R_12786767_SNP [dm3] 3R_16961045_SNP [dm6]	C	G	2.420e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	12233462	X_12233462_SNP [dm3] X_12339429_SNP [dm6]	T	A	2.423e^-4	0.735	INTERGENIC
X	14890256	X_14890256_SNP [dm3] X_14996223_SNP [dm6]	C	T	2.423e^-4	0.735	SYNONYMOUS_CODING eag
3L	5677997	3L_5677997_SNP [dm3] 3L_5684897_SNP [dm6]	T	C	2.423e^-4	0.735	INTRON sif
2L	3349731	2L_3349731_SNP [dm3] 2L_3349731_SNP [dm6]	A	T	2.429e^-4	0.735	INTRON E23
3R	25742649	3R_25742649_SNP [dm3] 3R_29916927_SNP [dm6]	A	T	2.436e^-4	0.735	INTRON trp
3L	7864443	3L_7864443_SNP [dm3] 3L_7871343_SNP [dm6]	G	C	2.436e^-4	0.735	INTRON CG32365
3R	17167400	3R_17167400_SNP [dm3] 3R_21341678_SNP [dm6]	G	T	2.438e^-4	0.735	INTRON CG16791	TF binding site BDTNP1_TFBS_da
X	12239925	X_12239925_SNP [dm3] X_12345892_SNP [dm6]	G	A	2.442e^-4	0.735	INTERGENIC
3R	22096692	3R_22096692_SNP [dm3] 3R_26270970_SNP [dm6]	G	A	2.446e^-4	0.735	INTRON CG6154
3R	12382630	3R_12382630_SNP [dm3] 3R_16556908_SNP [dm6]	T	C	2.463e^-4	0.735	INTRON CG42342
2R	6274744	2R_6274744_SNP [dm3] 2R_10387239_SNP [dm6]	A	G	2.468e^-4	0.735	INTRON CG42732
3L	19106253	3L_19106253_SNP [dm3] 3L_19113153_SNP [dm6]	A	T	2.470e^-4	0.735	INTRON CG14082	TF binding site mE1_TFBS_inv
3L	13553047	3L_13553047_SNP [dm3] 3L_13559947_SNP [dm6]	T	C	2.471e^-4	0.735	INTRON bru-3
3R	9913700	3R_9913700_SNP [dm3] 3R_14087978_SNP [dm6]	T	G	2.472e^-4	0.735	UTR_3_PRIME foxo
3R	9774699	3R_9774699_SNP [dm3] 3R_13948977_SNP [dm6]	G	A	2.474e^-4	0.735	NON_SYNONYMOUS_CODING CG31517	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19497545	3L_19497545_SNP [dm3] 3L_19504445_SNP [dm6]	C	T	2.481e^-4	0.735	UPSTREAM CG9452 DOWNSTREAM CR45731 INTERGENIC
3R	25159253	3R_25159253_SNP [dm3] 3R_29333531_SNP [dm6]	A	T	2.489e^-4	0.735	INTERGENIC
2L	17249506	2L_17249506_SNP [dm3] 2L_17249506_SNP [dm6]	C	T	2.489e^-4	0.735	INTRON beat-IIIc
2L	13151460	2L_13151460_SNP [dm3] 2L_13151460_SNP [dm6]	C	T	2.498e^-4	0.735	INTERGENIC
3R	15763014	3R_15763014_SNP [dm3] 3R_19937292_SNP [dm6]	A	G	2.498e^-4	0.735	SYNONYMOUS_CODING Hs6st
3R	21573559	3R_21573559_SNP [dm3] 3R_25747837_SNP [dm6]	G	A	2.511e^-4	0.735	INTRON LpR1
3R	11057823	3R_11057823_SNP [dm3] 3R_15232101_SNP [dm6]	T	G	2.512e^-4	0.735	UPSTREAM CR43471 DOWNSTREAM tefu & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	12797661	3R_12797661_SNP [dm3] 3R_16971939_SNP [dm6]	T	C	2.514e^-4	0.735	UTR_5_PRIME Abd-B	TF binding site BDTNP1_TFBS_prd
3R	26382434	3R_26382434_SNP [dm3] 3R_30556712_SNP [dm6]	A	T	2.514e^-4	0.735	NON_SYNONYMOUS_CODING CG34155 INTRON tmod
2L	4641057	2L_4641057_SNP [dm3] 2L_4641057_SNP [dm6]	C	T	2.516e^-4	0.735	UPSTREAM BG642163 INTERGENIC
2R	17758573	2R_17758573_SNP [dm3] 2R_21871068_SNP [dm6]	G	A	2.522e^-4	0.735	UPSTREAM Fili INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
3R	12831703	3R_12831703_SNP [dm3] 3R_17005981_SNP [dm6]	T	A	2.522e^-4	0.735	SYNONYMOUS_CODING Irc
3R	12831804	3R_12831804_SNP [dm3] 3R_17006082_SNP [dm6]	A	T	2.533e^-4	0.735	INTRON Irc
3R	25100402	3R_25100402_SNP [dm3] 3R_29274680_SNP [dm6]	C	A	2.535e^-4	0.735	INTERGENIC	regulatory region REDfly_CRMs
2R	6285969	2R_6285969_SNP [dm3] 2R_10398464_SNP [dm6]	A	T	2.542e^-4	0.735	INTRON CG42732
2L	8534221	2L_8534221_SNP [dm3] 2L_8534221_SNP [dm6]	C	T	2.547e^-4	0.735	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
3R	7676883	3R_7676883_SNP [dm3] 3R_11851161_SNP [dm6]	T	A	2.548e^-4	0.735	INTRON CG6959	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	5251727	2L_5251727_SNP [dm3] 2L_5251727_SNP [dm6]	A	G	2.549e^-4	0.735	INTRON tkv
3R	19253405	3R_19253405_SNP [dm3] 3R_23427683_SNP [dm6]	T	C	2.552e^-4	0.735	INTRON CG4374
3R	23209746	3R_23209746_SNP [dm3] 3R_27384024_SNP [dm6]	C	A	2.554e^-4	0.735	INTRON side
2L	12838507	2L_12838507_SNP [dm3] 2L_12838507_SNP [dm6]	A	G	2.559e^-4	0.735	INTERGENIC
2R	17844115	2R_17844115_SNP [dm3] 2R_21956610_SNP [dm6]	A	T	2.561e^-4	0.735	INTERGENIC
3R	21589033	3R_21589033_SNP [dm3] 3R_25763311_SNP [dm6]	T	A	2.566e^-4	0.735	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	5965640	3R_5965640_DEL [dm3] 3R_10139918_DEL [dm6]	CACCTCTTTC	C	2.583e^-4	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12677099	2R_12677099_SNP [dm3] 2R_16789594_SNP [dm6]	T	C	2.583e^-4	0.735	SYNONYMOUS_CODING CG5522
3R	20810155	3R_20810155_SNP [dm3] 3R_24984433_SNP [dm6]	C	G	2.587e^-4	0.735	UTR_5_PRIME tnc
3R	25582445	3R_25582445_SNP [dm3] 3R_29756723_SNP [dm6]	G	C	2.587e^-4	0.735	INTRON CR44953
3R	15644496	3R_15644496_SNP [dm3] 3R_19818774_SNP [dm6]	C	T	2.591e^-4	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	15643699	2L_15643699_SNP [dm3] 2L_15643699_SNP [dm6]	A	G	2.593e^-4	0.735	DOWNSTREAM CG4587 INTERGENIC
2R	4837880	2R_4837880_SNP [dm3] 2R_8950375_SNP [dm6]	A	T	2.595e^-4	0.735	NON_SYNONYMOUS_CODING CG8229 INTRON CG33199	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	15589777	3R_15589777_SNP [dm3] 3R_19764055_SNP [dm6]	A	T	2.599e^-4	0.735	INTRON GluClalpha
3R	15589778	3R_15589778_SNP [dm3] 3R_19764056_SNP [dm6]	A	T	2.599e^-4	0.735	INTRON GluClalpha
3R	23730871	3R_23730871_SNP [dm3] 3R_27905149_SNP [dm6]	G	A	2.600e^-4	0.735	UTR_5_PRIME CG34353	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26593185	3R_26593185_SNP [dm3] 3R_30767463_SNP [dm6]	T	G	2.614e^-4	0.735	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17160492	2R_17160492_SNP [dm3] 2R_21272987_SNP [dm6]	A	G	2.614e^-4	0.735	INTRON Rgk3
3L	11912456	3L_11912456_SNP [dm3] 3L_11919356_SNP [dm6]	A	C	2.620e^-4	0.735	INTRON CG44837	TF binding site mE1_TFBS_HSA
3R	12786779	3R_12786779_SNP [dm3] 3R_16961057_SNP [dm6]	A	G	2.625e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11636896	3L_11636896_SNP [dm3] 3L_11643796_SNP [dm6]	C	T	2.625e^-4	0.735	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
2R	19179217	2R_19179217_SNP [dm3] 2R_23291694_SNP [dm6]	T	A	2.644e^-4	0.735	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6572465	2R_6572465_SNP [dm3] 2R_10684960_SNP [dm6]	T	G	2.645e^-4	0.735	INTRON stan
2R	19311562	2R_19311562_DEL [dm3] 2R_23424039_DEL [dm6]	GACCTGAA	TTT	2.651e^-4	0.735	INTRON CG9815
3R	7949219	3R_7949219_SNP [dm3] 3R_12123497_SNP [dm6]	C	T	2.655e^-4	0.735	SYNONYMOUS_CODING CG4702	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	9870855	3L_9870855_SNP [dm3] 3L_9877755_SNP [dm6]	A	T	2.659e^-4	0.735	INTERGENIC
2R	8484652	2R_8484652_SNP [dm3] 2R_12597147_SNP [dm6]	C	T	2.660e^-4	0.735	INTRON Amph
3L	19319875	3L_19319875_SNP [dm3] 3L_19326775_SNP [dm6]	C	T	2.662e^-4	0.735	INTRON pip
3R	27073476	3R_27073476_DEL [dm3] 3R_31247754_DEL [dm6]	GTAGCTGGG	G	2.663e^-4	0.735	INTRON qless
X	6105094	X_6105094_SNP [dm3] X_6211061_SNP [dm6]	G	A	2.663e^-4	0.735	INTERGENIC
3R	23026103	3R_23026103_SNP [dm3] 3R_27200381_SNP [dm6]	G	T	2.665e^-4	0.735	INTERGENIC	regulatory region REDfly_CRMs
X	10232820	X_10232820_SNP [dm3] X_10338787_SNP [dm6]	C	G	2.672e^-4	0.735	INTRON CG43740
3L	14717917	3L_14717917_SNP [dm3] 3L_14724817_SNP [dm6]	G	T	2.673e^-4	0.735	INTRON ome
3R	18768825	3R_18768825_SNP [dm3] 3R_22943103_SNP [dm6]	G	T	2.684e^-4	0.735	INTRON klg
2R	7608962	2R_7608962_SNP [dm3] 2R_11721457_SNP [dm6]	G	C	2.691e^-4	0.735	INTRON pyr
3R	12834866	3R_12834866_SNP [dm3] 3R_17009144_SNP [dm6]	T	A	2.693e^-4	0.735	INTRON CG8907
3R	20502162	3R_20502162_SNP [dm3] 3R_24676440_SNP [dm6]	A	T	2.695e^-4	0.735	INTRON slo
3R	24573266	3R_24573266_INS [dm3] 3R_28747544_INS [dm6]	T	TG	2.707e^-4	0.735	DOWNSTREAM CG10000 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14112680	3L_14112680_SNP [dm3] 3L_14119580_SNP [dm6]	A	G	2.712e^-4	0.735	INTRON Sox21b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	2323474	2L_2323474_SNP [dm3] 2L_2323474_SNP [dm6]	G	C	2.722e^-4	0.735	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3L	16330800	3L_16330800_INS [dm3] 3L_16337700_INS [dm6]	T	TAATAATAATAATAATAATA...	2.722e^-4	0.735	INTERGENIC
3R	15589697	3R_15589697_DEL [dm3] 3R_19763975_DEL [dm6]	TATTACACAAAAAATTATTT...	C	2.726e^-4	0.735	INTRON GluClalpha
3L	16053454	3L_16053454_SNP [dm3] 3L_16060354_SNP [dm6]	G	A	2.731e^-4	0.735	INTRON Mbs
3R	11094128	3R_11094128_SNP [dm3] 3R_15268406_SNP [dm6]	A	T	2.732e^-4	0.735	UTR_5_PRIME CG14864 UPSTREAM Zip88E INTRON CG14864	TF binding site BDTNP1_TFBS_dl
2L	20840263	2L_20840263_SNP [dm3] 2L_20840263_SNP [dm6]	G	A	2.739e^-4	0.735	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sbb
3R	20764523	3R_20764523_SNP [dm3] 3R_24938801_SNP [dm6]	G	C	2.740e^-4	0.735	UTR_3_PRIME ssh UPSTREAM Osbp DOWNSTREAM ssh	TF binding site BDTNP1_TFBS_dl
3L	6085461	3L_6085461_SNP [dm3] 3L_6092361_SNP [dm6]	C	T	2.742e^-4	0.735	SYNONYMOUS_CODING CG10469 DOWNSTREAM CG13293 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8648501	3L_8648501_SNP [dm3] 3L_8655401_SNP [dm6]	A	G	2.750e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_cad
2R	11969008	2R_11969008_SNP [dm3] 2R_16081503_SNP [dm6]	A	G	2.750e^-4	0.735	UTR_3_PRIME Dg DOWNSTREAM Dg
X	5538753	X_5538753_SNP [dm3] X_5644720_SNP [dm6]	A	C	2.760e^-4	0.735	INTRON CG42492
2R	19179231	2R_19179231_SNP [dm3] 2R_23291708_SNP [dm6]	G	T	2.763e^-4	0.735	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	11843343	3L_11843343_SNP [dm3] 3L_11850243_SNP [dm6]	A	G	2.767e^-4	0.735	DOWNSTREAM CG44837 INTERGENIC
3R	8543895	3R_8543895_SNP [dm3] 3R_12718173_SNP [dm6]	A	G	2.770e^-4	0.735	INTRON Men
3L	16353975	3L_16353975_DEL [dm3] 3L_16360875_DEL [dm6]	GTGGTACACAAATCAGGG...	G	2.774e^-4	0.735	INTRON CG45057
3L	16872642	3L_16872642_SNP [dm3] 3L_16879542_SNP [dm6]	T	A	2.775e^-4	0.735	DOWNSTREAM CG32170 INTRON Lmpt
X	14414233	X_14414233_SNP [dm3] X_14520200_SNP [dm6]	T	A	2.781e^-4	0.735	DOWNSTREAM CR44110 INTERGENIC
2R	13183269	2R_13183269_SNP [dm3] 2R_17295764_SNP [dm6]	A	T	2.783e^-4	0.735	INTRON mbl
3R	3789415	3R_3789415_SNP [dm3] 3R_7963693_SNP [dm6]	A	G	2.789e^-4	0.735	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3R	23124046	3R_23124046_SNP [dm3] 3R_27298324_SNP [dm6]	C	T	2.792e^-4	0.735	SPLICE_SITE_REGION CG3339 INTRON CG3339	TF binding site mE1_TFBS_chinmo
3R	15736141	3R_15736141_SNP [dm3] 3R_19910419_SNP [dm6]	A	T	2.799e^-4	0.735	UPSTREAM RhoGAP92B & 1 other INTRON RhoGAP92B	TF binding site mE1_TFBS_HSA
3R	23245365	3R_23245365_SNP [dm3] 3R_27419643_SNP [dm6]	G	A	2.801e^-4	0.735	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11681210	2R_11681210_SNP [dm3] 2R_15793705_SNP [dm6]	G	A	2.802e^-4	0.735	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	13538554	3L_13538554_SNP [dm3] 3L_13545454_SNP [dm6]	G	C	2.802e^-4	0.735	INTRON bru-3	TF binding site mE1_TFBS_cad
3R	16777873	3R_16777873_SNP [dm3] 3R_20952151_SNP [dm6]	G	A	2.804e^-4	0.735	INTRON Atpalpha	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	12921149	3R_12921149_SNP [dm3] 3R_17095427_SNP [dm6]	G	T	2.805e^-4	0.735	UTR_5_PRIME cher INTRON cher
3L	14538233	3L_14538233_SNP [dm3] 3L_14545133_SNP [dm6]	G	T	2.805e^-4	0.735	INTRON CG9238	TF binding site BDTNP1_TFBS_z
3R	4284419	3R_4284419_SNP [dm3] 3R_8458697_SNP [dm6]	A	C	2.809e^-4	0.735	INTRON CG45263
3R	4905271	3R_4905271_SNP [dm3] 3R_9079549_SNP [dm6]	C	A	2.813e^-4	0.735	INTRON pum
3R	12804492	3R_12804492_SNP [dm3] 3R_16978770_SNP [dm6]	A	G	2.830e^-4	0.735	UPSTREAM Actn3 INTRON Ahcy89E
3R	21480712	3R_21480712_SNP [dm3] 3R_25654990_SNP [dm6]	G	A	2.839e^-4	0.735	SYNONYMOUS_CODING Tnks	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25592934	3R_25592934_SNP [dm3] 3R_29767212_SNP [dm6]	C	T	2.839e^-4	0.735	SYNONYMOUS_CODING kay	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11636240	3L_11636240_SNP [dm3] 3L_11643140_SNP [dm6]	C	T	2.839e^-4	0.735	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM CG32091
3R	12831875	3R_12831875_SNP [dm3] 3R_17006153_SNP [dm6]	T	A	2.840e^-4	0.735	SYNONYMOUS_CODING Irc
3R	23849203	3R_23849203_SNP [dm3] 3R_28023481_SNP [dm6]	G	T	2.849e^-4	0.735	INTERGENIC
3R	22134402	3R_22134402_SNP [dm3] 3R_26308680_SNP [dm6]	G	T	2.852e^-4	0.735	INTERGENIC
3R	7682871	3R_7682871_SNP [dm3] 3R_11857149_SNP [dm6]	A	G	2.854e^-4	0.735	INTRON CG6959
3R	25438962	3R_25438962_SNP [dm3] 3R_29613240_SNP [dm6]	T	A	2.863e^-4	0.735	INTRON alph
3R	25826206	3R_25826206_SNP [dm3] 3R_30000484_SNP [dm6]	C	G	2.873e^-4	0.735	UPSTREAM Tace DOWNSTREAM CG11504 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	2659944	2L_2659944_SNP [dm3] 2L_2659944_SNP [dm6]	A	G	2.873e^-4	0.735	INTERGENIC
2L	13718099	2L_13718099_SNP [dm3] 2L_13718099_SNP [dm6]	C	A	2.874e^-4	0.735	UPSTREAM CG31814 INTERGENIC
2R	5858509	2R_5858509_SNP [dm3] 2R_9971004_SNP [dm6]	T	A	2.875e^-4	0.735	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	12832575	3R_12832575_SNP [dm3] 3R_17006853_SNP [dm6]	T	C	2.883e^-4	0.735	SYNONYMOUS_CODING Irc
2L	2537179	2L_2537179_SNP [dm3] 2L_2537179_SNP [dm6]	G	A	2.884e^-4	0.735	INTERGENIC
3R	13375015	3R_13375015_SNP [dm3] 3R_17549293_SNP [dm6]	T	G	2.886e^-4	0.735	INTERGENIC
3R	23204809	3R_23204809_SNP [dm3] 3R_27379087_SNP [dm6]	A	G	2.899e^-4	0.735	UTR_3_PRIME side INTRON side
3L	15581339	3L_15581339_SNP [dm3] 3L_15588239_SNP [dm6]	T	A	2.899e^-4	0.735	UPSTREAM RhoGAP71E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	12779934	3R_12779934_SNP [dm3] 3R_16954212_SNP [dm6]	A	T	2.905e^-4	0.735	INTRON Abd-B	TF binding site mE1_TFBS_cad
3L	16341011	3L_16341011_SNP [dm3] 3L_16347911_SNP [dm6]	T	C	2.912e^-4	0.735	UPSTREAM mRpS34 DOWNSTREAM CG33257 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23342062	3R_23342062_SNP [dm3] 3R_27516340_SNP [dm6]	C	T	2.914e^-4	0.735	SYNONYMOUS_CODING CG13972
3R	12328143	3R_12328143_SNP [dm3] 3R_16502421_SNP [dm6]	A	G	2.922e^-4	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11096154	3R_11096154_SNP [dm3] 3R_15270432_SNP [dm6]	A	C	2.924e^-4	0.735	UTR_3_PRIME Zip88E & 1 other
2R	1006689	2R_1006689_SNP [dm3] 2R_5119184_SNP [dm6]	T	A	2.927e^-4	0.735	INTRON gus
3L	18005572	3L_18005572_SNP [dm3] 3L_18012472_SNP [dm6]	A	C	2.932e^-4	0.735	INTRON Eip75B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14695139	3L_14695139_DEL [dm3] 3L_14702039_DEL [dm6]	TTCCGT	T	2.939e^-4	0.735	UPSTREAM CG17177 INTRON ome
3R	27522658	3R_27522658_SNP [dm3] 3R_31696936_SNP [dm6]	A	G	2.940e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	4082451	2R_4082451_SNP [dm3] 2R_8194946_SNP [dm6]	C	A	2.940e^-4	0.735	INTRON LRP1
3R	23208142	3R_23208142_SNP [dm3] 3R_27382420_SNP [dm6]	C	A	2.940e^-4	0.735	SYNONYMOUS_CODING side	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17809949	2R_17809949_SNP [dm3] 2R_21922444_SNP [dm6]	T	C	2.956e^-4	0.735	INTRON Fili
2R	14160216	2R_14160216_SNP [dm3] 2R_18272711_SNP [dm6]	T	A	2.958e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4589798	X_4589798_SNP [dm3] X_4695765_SNP [dm6]	G	A	2.960e^-4	0.735	INTRON ctp
3R	22088829	3R_22088829_DEL [dm3] 3R_26263107_DEL [dm6]	CCT	C	2.968e^-4	0.735	INTRON CG6154
3R	20752363	3R_20752363_SNP [dm3] 3R_24926641_SNP [dm6]	G	A	2.969e^-4	0.735	SYNONYMOUS_CODING Trf4-2	TF binding site mE1_TFBS_chinmo
X	2503727	X_2503727_SNP [dm3] X_2609694_SNP [dm6]	G	A	2.975e^-4	0.735	SYNONYMOUS_CODING CG8636 UPSTREAM Bzd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	16353886	3L_16353886_SNP [dm3] 3L_16360786_SNP [dm6]	T	A	2.975e^-4	0.735	INTRON CG45057
3R	11092500	3R_11092500_SNP [dm3] 3R_15266778_SNP [dm6]	T	A	2.979e^-4	0.735	NON_SYNONYMOUS_CODING CG14864 DOWNSTREAM Oscp	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	14411121	3R_14411121_SNP [dm3] 3R_18585399_SNP [dm6]	T	C	2.981e^-4	0.735	UPSTREAM fray INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	11378881	3R_11378881_SNP [dm3] 3R_15553159_SNP [dm6]	C	T	2.989e^-4	0.735	UPSTREAM CG18516 INTERGENIC
3R	14409731	3R_14409731_SNP [dm3] 3R_18584009_SNP [dm6]	C	T	2.989e^-4	0.735	UPSTREAM CG7694 & 1 other INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	27523544	3R_27523544_SNP [dm3] 3R_31697822_SNP [dm6]	C	T	2.991e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_sens
3R	23414636	3R_23414636_SNP [dm3] 3R_27588914_SNP [dm6]	C	T	2.997e^-4	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19672843	2R_19672843_SNP [dm3] 2R_23785320_SNP [dm6]	A	T	2.998e^-4	0.735	INTRON CG9850
3L	18245814	3L_18245814_SNP [dm3] 3L_18252714_SNP [dm6]	C	T	2.998e^-4	0.735	UTR_3_PRIME CheA75a
3R	11091306	3R_11091306_SNP [dm3] 3R_15265584_SNP [dm6]	C	T	2.999e^-4	0.735	UPSTREAM Oscp DOWNSTREAM Set INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	20911957	3R_20911957_SNP [dm3] 3R_25086235_SNP [dm6]	G	A	3.001e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9509641	2R_9509641_SNP [dm3] 2R_13622136_SNP [dm6]	C	T	3.007e^-4	0.735	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
4	496978	4_496978_SNP [dm3] 4_476352_SNP [dm6]	C	T	3.008e^-4	0.735	INTRON Asator	transposable element FlyBase
3R	22131562	3R_22131562_SNP [dm3] 3R_26305840_SNP [dm6]	T	A	3.010e^-4	0.735	INTERGENIC
2R	2851747	2R_2851747_SNP [dm3] 2R_6964242_SNP [dm6]	T	A	3.015e^-4	0.735	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	12783936	3R_12783936_SNP [dm3] 3R_16958214_SNP [dm6]	T	G	3.018e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	20767318	2L_20767318_SNP [dm3] 2L_20767318_SNP [dm6]	A	G	3.027e^-4	0.735	UTR_3_PRIME dia DOWNSTREAM dia	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8089490	3L_8089490_SNP [dm3] 3L_8096390_SNP [dm6]	C	T	3.038e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
2R	1247210	2R_1247210_INS [dm3] 2R_5359705_INS [dm6]	T	TGGAATAACACTTT...	3.040e^-4	0.735	DOWNSTREAM CG10417 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3863786	3L_3863786_SNP [dm3] 3L_3863786_SNP [dm6]	A	G	3.041e^-4	0.735	EXON CR45379	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11570479	3R_11570479_SNP [dm3] 3R_15744757_SNP [dm6]	T	G	3.042e^-4	0.735	UTR_5_PRIME CG4520
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	3.042e^-4	0.735	INTRON CR45179 & 2 others
3R	22996947	3R_22996947_SNP [dm3] 3R_27171225_SNP [dm6]	G	A	3.053e^-4	0.735	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
3L	19204508	3L_19204508_SNP [dm3] 3L_19211408_SNP [dm6]	A	G	3.055e^-4	0.735	INTRON fz2	TF binding site mE1_TFBS_Kr
3L	8089330	3L_8089330_SNP [dm3] 3L_8096230_SNP [dm6]	A	T	3.065e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
2L	9325512	2L_9325512_SNP [dm3] 2L_9325512_SNP [dm6]	G	A	3.071e^-4	0.735	UPSTREAM CR45456 INTERGENIC
3R	14327761	3R_14327761_SNP [dm3] 3R_18502039_SNP [dm6]	A	G	3.073e^-4	0.735	INTRON fru
3L	5612166	3L_5612166_SNP [dm3] 3L_5619066_SNP [dm6]	C	G	3.076e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15736060	3R_15736060_SNP [dm3] 3R_19910338_SNP [dm6]	A	G	3.081e^-4	0.735	UPSTREAM RhoGAP92B & 1 other INTRON RhoGAP92B
2L	8044273	2L_8044273_SNP [dm3] 2L_8044273_SNP [dm6]	C	T	3.081e^-4	0.735	INTRON CG7466	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	6374677	3L_6374677_SNP [dm3] 3L_6381577_SNP [dm6]	C	G	3.086e^-4	0.735	INTERGENIC
3R	12803083	3R_12803083_SNP [dm3] 3R_16977361_SNP [dm6]	G	A	3.091e^-4	0.735	SYNONYMOUS_CODING Actn3
2R	843485	2R_843485_SNP [dm3] 2R_4955980_SNP [dm6]	G	T	3.094e^-4	0.735	INTRON Ir41a	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	5966140	3R_5966140_SNP [dm3] 3R_10140418_SNP [dm6]	C	T	3.096e^-4	0.735	UTR_3_PRIME TAF1B UPSTREAM tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_Trl
3R	23615082	3R_23615082_SNP [dm3] 3R_27789360_SNP [dm6]	T	A	3.103e^-4	0.735	INTRON CG34353	TF binding site mE1_TFBS_chinmo
X	2948856	X_2948856_SNP [dm3] X_3054823_SNP [dm6]	T	C	3.108e^-4	0.735	INTRON kirre
3R	23414291	3R_23414291_SNP [dm3] 3R_27588569_SNP [dm6]	A	G	3.111e^-4	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8587473	3L_8587473_SNP [dm3] 3L_8594373_SNP [dm6]	A	G	3.119e^-4	0.735	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078
2R	2851701	2R_2851701_SNP [dm3] 2R_6964196_SNP [dm6]	T	G	3.120e^-4	0.735	INTRON mim & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21101827	3R_21101827_SNP [dm3] 3R_25276105_SNP [dm6]	A	C	3.127e^-4	0.735	DOWNSTREAM CG11878 INTRON CG10513
3L	16335381	3L_16335381_SNP [dm3] 3L_16342281_SNP [dm6]	C	T	3.132e^-4	0.735	INTRON CG4998	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8649950	3L_8649950_SNP [dm3] 3L_8656850_SNP [dm6]	T	A	3.136e^-4	0.735	INTERGENIC
2R	19672794	2R_19672794_SNP [dm3] 2R_23785271_SNP [dm6]	C	T	3.145e^-4	0.735	INTRON CG9850
2L	5336852	2L_5336852_SNP [dm3] 2L_5336852_SNP [dm6]	A	T	3.147e^-4	0.735	UPSTREAM fusl INTRON fusl
X	12495343	X_12495343_SNP [dm3] X_12601310_SNP [dm6]	C	T	3.151e^-4	0.735	INTRON Sec16	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	4118423	2R_4118423_SNP [dm3] 2R_8230918_SNP [dm6]	A	T	3.151e^-4	0.735	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3804325	3R_3804325_SNP [dm3] 3R_7978603_SNP [dm6]	T	C	3.155e^-4	0.735	UPSTREAM CD98hc & 1 other DOWNSTREAM Sfp84E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	14411097	3R_14411097_SNP [dm3] 3R_18585375_SNP [dm6]	T	C	3.172e^-4	0.735	UPSTREAM fray INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3R	4509676	3R_4509676_SNP [dm3] 3R_8683954_SNP [dm6]	G	T	3.179e^-4	0.735	DOWNSTREAM CG44227 EXON CR44937	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5538679	X_5538679_SNP [dm3] X_5644646_SNP [dm6]	T	A	3.179e^-4	0.735	INTRON CG42492
3R	22089582	3R_22089582_SNP [dm3] 3R_26263860_SNP [dm6]	G	T	3.180e^-4	0.735	INTRON CG6154
3R	23201052	3R_23201052_SNP [dm3] 3R_27375330_SNP [dm6]	G	T	3.181e^-4	0.735	UTR_3_PRIME side DOWNSTREAM side
3R	26396769	3R_26396769_SNP [dm3] 3R_30571047_SNP [dm6]	T	C	3.185e^-4	0.735	UPSTREAM tmod INTRON tmod
2R	2852857	2R_2852857_SNP [dm3] 2R_6965352_SNP [dm6]	G	A	3.186e^-4	0.735	INTRON mim & 1 other
2L	16902976	2L_16902976_SNP [dm3] 2L_16902976_SNP [dm6]	C	T	3.201e^-4	0.735	SYNONYMOUS_CODING tweek UPSTREAM CG12288	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	14960881	2L_14960881_SNP [dm3] 2L_14960881_SNP [dm6]	T	A	3.202e^-4	0.735	INTRON CG42313
2R	11973544	2R_11973544_SNP [dm3] 2R_16086039_SNP [dm6]	T	C	3.203e^-4	0.735	SPLICE_SITE_REGION Dg INTRON Dg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	1103193	2R_1103193_SNP [dm3] 2R_5215688_SNP [dm6]	G	A	3.205e^-4	0.735	INTRON Nipped-A	transposable element FlyBase
2L	4564370	2L_4564370_SNP [dm3] 2L_4564370_SNP [dm6]	C	G	3.207e^-4	0.735	INTRON dp	TF binding site mE1_TFBS_cad
3R	20764544	3R_20764544_SNP [dm3] 3R_24938822_SNP [dm6]	T	A	3.209e^-4	0.735	UTR_3_PRIME ssh UPSTREAM Osbp DOWNSTREAM ssh	TF binding site BDTNP1_TFBS_dl
3R	19553305	3R_19553305_SNP [dm3] 3R_23727583_SNP [dm6]	A	C	3.209e^-4	0.735	UPSTREAM CG10365 INTRON CG10365
3R	12790238	3R_12790238_SNP [dm3] 3R_16964516_SNP [dm6]	T	C	3.214e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B
3L	19356604	3L_19356604_SNP [dm3] 3L_19363504_SNP [dm6]	C	A	3.216e^-4	0.735	INTRON CG32206
2L	2538355	2L_2538355_SNP [dm3] 2L_2538355_SNP [dm6]	C	G	3.216e^-4	0.735	INTERGENIC
3L	12316576	3L_12316576_SNP [dm3] 3L_12323476_SNP [dm6]	C	T	3.222e^-4	0.735	INTERGENIC
3L	8750470	3L_8750470_SNP [dm3] 3L_8757370_SNP [dm6]	A	C	3.227e^-4	0.735	DOWNSTREAM CG6576 INTRON Fhos
3L	7864454	3L_7864454_SNP [dm3] 3L_7871354_SNP [dm6]	C	A	3.230e^-4	0.735	INTRON CG32365
3R	12805973	3R_12805973_SNP [dm3] 3R_16980251_SNP [dm6]	A	T	3.239e^-4	0.735	INTRON Ahcy89E
2L	4118681	2L_4118681_SNP [dm3] 2L_4118681_SNP [dm6]	T	A	3.253e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10267210	3L_10267210_DEL [dm3] 3L_10274110_DEL [dm6]	ACG	A	3.255e^-4	0.735	INTRON Or67d
3L	12583064	3L_12583064_SNP [dm3] 3L_12589964_SNP [dm6]	C	T	3.256e^-4	0.735	INTRON ara	TF binding site BDTNP1_TFBS_twi
3R	25456354	3R_25456354_SNP [dm3] 3R_29630632_SNP [dm6]	A	T	3.259e^-4	0.735	UTR_3_PRIME Dop1R2
3R	26595250	3R_26595250_SNP [dm3] 3R_30769528_SNP [dm6]	G	A	3.267e^-4	0.735	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12327997	3R_12327997_SNP [dm3] 3R_16502275_SNP [dm6]	G	T	3.270e^-4	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16090663	2R_16090663_SNP [dm3] 2R_20203158_SNP [dm6]	A	G	3.272e^-4	0.735	INTERGENIC
X	9997864	X_9997864_SNP [dm3] X_10103831_SNP [dm6]	A	G	3.279e^-4	0.735	INTRON RhoU
3R	21589188	3R_21589188_SNP [dm3] 3R_25763466_SNP [dm6]	G	T	3.284e^-4	0.735	UPSTREAM LpR1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	4889111	2L_4889111_DEL [dm3] 2L_4889111_DEL [dm6]	GCTTAGTGTCGAAATG...	G	3.284e^-4	0.735	UPSTREAM CG15625 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10424385	2R_10424385_DEL [dm3] 2R_14536880_DEL [dm6]	GCATTTGGT	G	3.284e^-4	0.735	INTRON ttv
2L	968456	2L_968456_SNP [dm3] 2L_968456_SNP [dm6]	T	C	3.286e^-4	0.735	INTERGENIC
3R	26037371	3R_26037371_SNP [dm3] 3R_30211649_SNP [dm6]	C	T	3.294e^-4	0.735	UPSTREAM CecA2 DOWNSTREAM CecA1 INTRON Cec-Psi1
3L	2354012	3L_2354012_SNP [dm3] 3L_2354012_SNP [dm6]	G	A	3.301e^-4	0.735	INTERGENIC
2R	4118339	2R_4118339_SNP [dm3] 2R_8230834_SNP [dm6]	G	T	3.302e^-4	0.735	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1241924	2L_1241924_SNP [dm3] 2L_1241924_SNP [dm6]	C	G	3.305e^-4	0.735	NON_SYNONYMOUS_CODING CG5397
3R	12811822	3R_12811822_SNP [dm3] 3R_16986100_SNP [dm6]	G	A	3.305e^-4	0.735	INTRON CG18622
3L	10811103	3L_10811103_SNP [dm3] 3L_10818003_SNP [dm6]	C	A	3.307e^-4	0.735	DOWNSTREAM CR45247 INTERGENIC
3R	22141237	3R_22141237_SNP [dm3] 3R_26315515_SNP [dm6]	T	C	3.309e^-4	0.735	INTERGENIC
3R	14719948	3R_14719948_SNP [dm3] 3R_18894226_SNP [dm6]	A	T	3.309e^-4	0.735	INTERGENIC
2L	2537794	2L_2537794_SNP [dm3] 2L_2537794_SNP [dm6]	T	G	3.309e^-4	0.735	INTERGENIC
X	3922599	X_3922599_SNP [dm3] X_4028566_SNP [dm6]	A	G	3.311e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9626801	3R_9626801_SNP [dm3] 3R_13801079_SNP [dm6]	T	A	3.313e^-4	0.735	INTERGENIC
3L	14666379	3L_14666379_SNP [dm3] 3L_14673279_SNP [dm6]	A	G	3.314e^-4	0.735	UPSTREAM CG43121 DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23209111	3R_23209111_SNP [dm3] 3R_27383389_SNP [dm6]	G	T	3.316e^-4	0.735	INTRON side
2L	17642893	2L_17642893_SNP [dm3] 2L_17642893_SNP [dm6]	G	T	3.317e^-4	0.735	INTERGENIC
3L	12316446	3L_12316446_SNP [dm3] 3L_12323346_SNP [dm6]	G	A	3.321e^-4	0.735	INTERGENIC
2R	6742929	2R_6742929_SNP [dm3] 2R_10855424_SNP [dm6]	A	C	3.322e^-4	0.735	DOWNSTREAM CR45136 INTRON CG30015	TF binding site BDTNP1_TFBS_twi
3R	9999215	3R_9999215_SNP [dm3] 3R_14173493_SNP [dm6]	A	G	3.324e^-4	0.735	UTR_3_PRIME Dop1R1
3R	26598084	3R_26598084_SNP [dm3] 3R_30772362_SNP [dm6]	G	C	3.327e^-4	0.735	INTRON zfh1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	9509668	2R_9509668_SNP [dm3] 2R_13622163_SNP [dm6]	C	T	3.327e^-4	0.735	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	19179002	2R_19179002_INS [dm3] 2R_23291479_INS [dm6]	A	ACATCTCCATCA...	3.327e^-4	0.735	UPSTREAM CR44783 INTERGENIC
3R	13824181	3R_13824181_SNP [dm3] 3R_17998459_SNP [dm6]	C	T	3.332e^-4	0.735	INTRON cpo
3R	19163215	3R_19163215_SNP [dm3] 3R_23337493_SNP [dm6]	A	G	3.338e^-4	0.735	INTRON pnt	TF binding site mE1_TFBS_inv
2L	2553554	2L_2553554_SNP [dm3] 2L_2553554_SNP [dm6]	T	C	3.343e^-4	0.735	UPSTREAM CG3515 INTERGENIC
2R	20731823	2R_20731823_SNP [dm3] 2R_24844300_SNP [dm6]	A	T	3.344e^-4	0.735	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1735556	2L_1735556_SNP [dm3] 2L_1735556_SNP [dm6]	T	C	3.345e^-4	0.735	INTRON CG17646
3R	12825326	3R_12825326_SNP [dm3] 3R_16999604_SNP [dm6]	A	G	3.348e^-4	0.735	DOWNSTREAM CG3534 INTRON CG16941
3R	12825329	3R_12825329_SNP [dm3] 3R_16999607_SNP [dm6]	T	G	3.348e^-4	0.735	DOWNSTREAM CG3534 INTRON CG16941
3L	14665171	3L_14665171_SNP [dm3] 3L_14672071_SNP [dm6]	G	T	3.353e^-4	0.735	NON_SYNONYMOUS_CODING CG43121 UPSTREAM ome DOWNSTREAM dlp	TF binding site mE1_TFBS_bab1
3L	5882391	3L_5882391_SNP [dm3] 3L_5889291_SNP [dm6]	T	C	3.354e^-4	0.735	INTERGENIC
2L	1903321	2L_1903321_SNP [dm3] 2L_1903321_SNP [dm6]	G	C	3.354e^-4	0.735	INTRON CG7337
3R	4608749	3R_4608749_SNP [dm3] 3R_8783027_SNP [dm6]	T	C	3.357e^-4	0.735	SYNONYMOUS_CODING Pif1A UTR_5_PRIME Pif1B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10376170	3L_10376170_SNP [dm3] 3L_10383070_SNP [dm6]	T	A	3.358e^-4	0.735	INTERGENIC
3L	12985350	3L_12985350_SNP [dm3] 3L_12992250_SNP [dm6]	T	C	3.359e^-4	0.735	INTERGENIC
3R	8659395	3R_8659395_SNP [dm3] 3R_12833673_SNP [dm6]	G	A	3.360e^-4	0.735	INTERGENIC
2R	7860563	2R_7860563_SNP [dm3] 2R_11973058_SNP [dm6]	C	A	3.363e^-4	0.735	INTRON CG8290	TF binding site mE1_TFBS_cad
3L	5878479	3L_5878479_SNP [dm3] 3L_5885379_SNP [dm6]	A	G	3.375e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	14969357	2L_14969357_SNP [dm3] 2L_14969357_SNP [dm6]	G	T	3.377e^-4	0.735	INTRON CG42313
2L	6600949	2L_6600949_SNP [dm3] 2L_6600949_SNP [dm6]	C	A	3.379e^-4	0.735	UTR_5_PRIME CG11319
3R	15578776	3R_15578776_SNP [dm3] 3R_19753054_SNP [dm6]	A	G	3.380e^-4	0.735	INTRON GluClalpha
3R	26983875	3R_26983875_SNP [dm3] 3R_31158153_SNP [dm6]	A	G	3.383e^-4	0.735	DOWNSTREAM stops INTRON Gycbeta100B	TF binding site mE1_TFBS_chinmo
3L	7803619	3L_7803619_DEL [dm3] 3L_7810519_DEL [dm6]	ATA	A	3.385e^-4	0.735	UPSTREAM CG32369 DOWNSTREAM Pdp1 INTERGENIC
2L	4675771	2L_4675771_DEL [dm3] 2L_4675771_DEL [dm6]	GAGCGTAG	G	3.387e^-4	0.735	INTERGENIC
2L	4683614	2L_4683614_SNP [dm3] 2L_4683614_SNP [dm6]	C	T	3.392e^-4	0.735	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	14177225	3L_14177225_SNP [dm3] 3L_14184125_SNP [dm6]	C	G	3.395e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26156607	3R_26156607_SNP [dm3] 3R_30330885_SNP [dm6]	C	T	3.397e^-4	0.735	INTRON hdc
3R	11288263	3R_11288263_SNP [dm3] 3R_15462541_SNP [dm6]	A	G	3.407e^-4	0.735	INTRON AdamTS-A
2R	19178990	2R_19178990_SNP [dm3] 2R_23291467_SNP [dm6]	G	T	3.419e^-4	0.735	UPSTREAM CR44783 INTERGENIC
2L	4682520	2L_4682520_SNP [dm3] 2L_4682520_SNP [dm6]	A	T	3.425e^-4	0.735	UPSTREAM CG11929 DOWNSTREAM Bsg25A INTERGENIC
3R	26934550	3R_26934550_SNP [dm3] 3R_31108828_SNP [dm6]	G	A	3.430e^-4	0.735	SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad
2L	15641826	2L_15641826_SNP [dm3] 2L_15641826_SNP [dm6]	A	G	3.450e^-4	0.735	INTERGENIC
3R	3425233	3R_3425233_SNP [dm3] 3R_7599511_SNP [dm6]	G	A	3.451e^-4	0.735	INTRON CG34127
3R	6943427	3R_6943427_SNP [dm3] 3R_11117705_SNP [dm6]	A	G	3.461e^-4	0.735	INTERGENIC
2L	2093933	2L_2093933_SNP [dm3] 2L_2093933_SNP [dm6]	C	T	3.463e^-4	0.735	INTRON dpr3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14411110	3R_14411110_SNP [dm3] 3R_18585388_SNP [dm6]	C	T	3.464e^-4	0.735	UPSTREAM fray INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	9509911	2R_9509911_SNP [dm3] 2R_13622406_SNP [dm6]	A	T	3.479e^-4	0.735	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	11356204	3L_11356204_SNP [dm3] 3L_11363104_SNP [dm6]	T	A	3.486e^-4	0.735	INTRON CG6163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9325513	2L_9325513_SNP [dm3] 2L_9325513_SNP [dm6]	T	C	3.486e^-4	0.735	UPSTREAM CR45456 INTERGENIC
3L	8165729	3L_8165729_SNP [dm3] 3L_8172629_SNP [dm6]	T	C	3.487e^-4	0.735	NON_SYNONYMOUS_CODING RecQ4
2R	11680576	2R_11680576_SNP [dm3] 2R_15793071_SNP [dm6]	A	G	3.490e^-4	0.735	UPSTREAM tun INTRON Zasp52
3L	10506850	3L_10506850_SNP [dm3] 3L_10513750_SNP [dm6]	G	A	3.492e^-4	0.735	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
3R	4611284	3R_4611284_SNP [dm3] 3R_8785562_SNP [dm6]	T	A	3.495e^-4	0.735	INTRON Pif1B & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	17761542	3R_17761542_SNP [dm3] 3R_21935820_SNP [dm6]	T	A	3.495e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8186547	2L_8186547_SNP [dm3] 2L_8186547_SNP [dm6]	T	C	3.498e^-4	0.735	SYNONYMOUS_CODING Piezo
2R	15145218	2R_15145218_SNP [dm3] 2R_19257713_SNP [dm6]	G	A	3.503e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	18881969	3R_18881969_SNP [dm3] 3R_23056247_SNP [dm6]	A	T	3.509e^-4	0.735	NON_SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13667288	X_13667288_SNP [dm3] X_13773255_SNP [dm6]	T	C	3.517e^-4	0.735	SYNONYMOUS_CODING rdgB	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26406166	3R_26406166_SNP [dm3] 3R_30580444_SNP [dm6]	C	T	3.518e^-4	0.735	SYNONYMOUS_CODING CG9702
2L	4264255	2L_4264255_SNP [dm3] 2L_4264255_SNP [dm6]	G	A	3.523e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8089466	3L_8089466_SNP [dm3] 3L_8096366_SNP [dm6]	A	C	3.524e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
2L	17877485	2L_17877485_SNP [dm3] 2L_17877485_SNP [dm6]	A	G	3.525e^-4	0.735	INTERGENIC
3L	10351422	3L_10351422_SNP [dm3] 3L_10358322_SNP [dm6]	C	T	3.533e^-4	0.735	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	8659244	3R_8659244_SNP [dm3] 3R_12833522_SNP [dm6]	G	T	3.537e^-4	0.735	INTERGENIC
4	438060	4_438060_SNP [dm3] 4_417434_SNP [dm6]	C	T	3.538e^-4	0.735	INTERGENIC	transposable element FlyBase
3L	455941	3L_455941_DEL [dm3] 3L_455941_DEL [dm6]	AGA	A	3.540e^-4	0.735	INTRON klar
2L	2537561	2L_2537561_SNP [dm3] 2L_2537561_SNP [dm6]	A	G	3.543e^-4	0.735	INTERGENIC
2L	4957358	2L_4957358_SNP [dm3] 2L_4957358_SNP [dm6]	A	T	3.548e^-4	0.735	INTRON Marcal1
2L	9325552	2L_9325552_SNP [dm3] 2L_9325552_SNP [dm6]	A	G	3.551e^-4	0.735	UPSTREAM CR45456 INTERGENIC
3L	4088948	3L_4088948_SNP [dm3] 3L_4088948_SNP [dm6]	A	G	3.555e^-4	0.735	UPSTREAM CG14989 & 1 other INTRON CG14989
2L	15643208	2L_15643208_SNP [dm3] 2L_15643208_SNP [dm6]	T	C	3.557e^-4	0.735	DOWNSTREAM CG4587 INTERGENIC
3R	7677496	3R_7677496_SNP [dm3] 3R_11851774_SNP [dm6]	A	G	3.559e^-4	0.735	INTRON CG6959
3L	2409699	3L_2409699_SNP [dm3] 3L_2409699_SNP [dm6]	C	T	3.567e^-4	0.735	DOWNSTREAM CG45186 INTRON CG45186	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv
2R	4118376	2R_4118376_SNP [dm3] 2R_8230871_SNP [dm6]	T	C	3.568e^-4	0.735	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14536121	3L_14536121_SNP [dm3] 3L_14543021_SNP [dm6]	C	T	3.569e^-4	0.735	INTRON CG9238
3R	11099820	3R_11099820_SNP [dm3] 3R_15274098_SNP [dm6]	G	T	3.575e^-4	0.735	INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	3381642	2L_3381642_SNP [dm3] 2L_3381642_SNP [dm6]	C	T	3.580e^-4	0.735	INTERGENIC
2L	2537192	2L_2537192_SNP [dm3] 2L_2537192_SNP [dm6]	T	A	3.582e^-4	0.735	INTERGENIC
X	8118621	X_8118621_SNP [dm3] X_8224588_SNP [dm6]	G	C	3.589e^-4	0.735	INTRON sdt	TF binding site mE1_TFBS_HSA
2L	17260036	2L_17260036_INS [dm3] 2L_17260036_INS [dm6]	A	AA	3.590e^-4	0.735	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	12327981	3R_12327981_SNP [dm3] 3R_16502259_SNP [dm6]	T	C	3.593e^-4	0.735	UPSTREAM CG42342 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	1433263	3L_1433263_SNP [dm3] 3L_1433263_SNP [dm6]	G	A	3.597e^-4	0.735	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	982479	3L_982479_SNP [dm3] 3L_982479_SNP [dm6]	A	G	3.597e^-4	0.735	UTR_3_PRIME Glut1 INTRON Glut1
2L	10456001	2L_10456001_SNP [dm3] 2L_10456001_SNP [dm6]	A	G	3.603e^-4	0.735	UTR_5_PRIME CG5322	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11581216	2L_11581216_SNP [dm3] 2L_11581216_SNP [dm6]	C	T	3.607e^-4	0.735	UPSTREAM kek2 INTERGENIC
3R	6362974	3R_6362974_SNP [dm3] 3R_10537252_SNP [dm6]	A	T	3.608e^-4	0.735	INTRON hth	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	13471648	3R_13471648_SNP [dm3] 3R_17645926_SNP [dm6]	T	G	3.611e^-4	0.735	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM CG43175 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	1042781	3L_1042781_SNP [dm3] 3L_1042781_SNP [dm6]	T	C	3.613e^-4	0.735	INTRON bab1
3R	11571790	3R_11571790_SNP [dm3] 3R_15746068_SNP [dm6]	A	G	3.615e^-4	0.735	DOWNSTREAM CG4520 INTRON CG4520
3R	24272229	3R_24272229_SNP [dm3] 3R_28446507_SNP [dm6]	C	G	3.618e^-4	0.735	INTRON beat-VI
3L	2540799	3L_2540799_SNP [dm3] 3L_2540799_SNP [dm6]	C	A	3.626e^-4	0.735	INTRON Spn
3R	25018313	3R_25018313_SNP [dm3] 3R_29192591_SNP [dm6]	G	A	3.628e^-4	0.735	INTRON CG14509
2R	16964609	2R_16964609_SNP [dm3] 2R_21077104_SNP [dm6]	G	A	3.636e^-4	0.735	SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	17510908	3R_17510908_SNP [dm3] 3R_21685186_SNP [dm6]	T	C	3.640e^-4	0.735	INTRON CG31176
3R	6943542	3R_6943542_SNP [dm3] 3R_11117820_SNP [dm6]	T	C	3.644e^-4	0.735	INTERGENIC
3R	12783891	3R_12783891_SNP [dm3] 3R_16958169_SNP [dm6]	C	A	3.648e^-4	0.735	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	12790237	3R_12790237_SNP [dm3] 3R_16964515_SNP [dm6]	A	T	3.651e^-4	0.735	UPSTREAM Abd-B INTRON Abd-B
3R	9999220	3R_9999220_DEL [dm3] 3R_14173498_DEL [dm6]	CCG	TT	3.653e^-4	0.735	UTR_3_PRIME Dop1R1
3R	9999227	3R_9999227_MNP [dm3] 3R_14173505_MNP [dm6]	AGC	TTA	3.653e^-4	0.735	UTR_3_PRIME Dop1R1
3R	9999231	3R_9999231_MNP [dm3] 3R_14173509_MNP [dm6]	GGC	TAT	3.653e^-4	0.735	UTR_3_PRIME Dop1R1
3L	8989259	3L_8989259_SNP [dm3] 3L_8996159_SNP [dm6]	T	C	3.656e^-4	0.735	START_GAINED smg UTR_5_PRIME smg INTRON smg
3R	7044854	3R_7044854_SNP [dm3] 3R_11219132_SNP [dm6]	T	C	3.665e^-4	0.735	NON_SYNONYMOUS_CODING CG6689	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	7073284	2L_7073284_SNP [dm3] 2L_7073284_SNP [dm6]	T	C	3.667e^-4	0.735	INTRON Pvf2
2L	11602200	2L_11602200_SNP [dm3] 2L_11602200_SNP [dm6]	G	A	3.671e^-4	0.735	INTRON kek2
3R	13663611	3R_13663611_MNP [dm3] 3R_17837889_MNP [dm6]	TATA	GCGT	3.678e^-4	0.735	INTRON tinc	transposable element FlyBase
3L	10351036	3L_10351036_SNP [dm3] 3L_10357936_SNP [dm6]	T	C	3.682e^-4	0.735	INTRON CR44327	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5729161	2L_5729161_SNP [dm3] 2L_5729161_SNP [dm6]	A	C	3.683e^-4	0.735	UPSTREAM CG14006 INTRON CG11030	TF binding site BDTNP1_TFBS_dl
3L	8089331	3L_8089331_SNP [dm3] 3L_8096231_SNP [dm6]	T	A	3.691e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
3L	8089334	3L_8089334_SNP [dm3] 3L_8096234_SNP [dm6]	T	A	3.691e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
2L	2538953	2L_2538953_SNP [dm3] 2L_2538953_SNP [dm6]	T	C	3.697e^-4	0.735	INTERGENIC
2L	1398897	2L_1398897_SNP [dm3] 2L_1398897_SNP [dm6]	C	A	3.698e^-4	0.735	INTRON lea
3R	27551151	3R_27551151_SNP [dm3] 3R_31725429_SNP [dm6]	C	A	3.698e^-4	0.735	UPSTREAM ttk INTRON ttk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	22006781	3R_22006781_DEL [dm3] 3R_26181059_DEL [dm6]	ATGTTTGTTTTAA...	A	3.700e^-4	0.735	INTRON CG31323
3R	5685694	3R_5685694_SNP [dm3] 3R_9859972_SNP [dm6]	A	T	3.713e^-4	0.735	INTRON Teh1
3R	25744615	3R_25744615_SNP [dm3] 3R_29918893_SNP [dm6]	G	A	3.714e^-4	0.735	NON_SYNONYMOUS_CODING trp	TF binding site mE1_TFBS_chinmo
2R	10418870	2R_10418870_SNP [dm3] 2R_14531365_SNP [dm6]	C	T	3.716e^-4	0.735	INTRON ttv
3R	6942739	3R_6942739_SNP [dm3] 3R_11117017_SNP [dm6]	A	G	3.716e^-4	0.735	INTERGENIC
2R	6757673	2R_6757673_SNP [dm3] 2R_10870168_SNP [dm6]	G	A	3.717e^-4	0.735	INTRON CG30015	TF binding site BDTNP1_TFBS_da
2L	9325572	2L_9325572_DEL [dm3] 2L_9325572_DEL [dm6]	TT	T	3.720e^-4	0.735	UPSTREAM CR45456 INTERGENIC
2L	14050786	2L_14050786_SNP [dm3] 2L_14050786_SNP [dm6]	C	A	3.720e^-4	0.735	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	9199981	3L_9199981_SNP [dm3] 3L_9206881_SNP [dm6]	C	T	3.721e^-4	0.735	UPSTREAM Slc45-1 INTRON Slc45-1
2R	5831780	2R_5831780_SNP [dm3] 2R_9944275_SNP [dm6]	C	T	3.721e^-4	0.735	UTR_5_PRIME Mef2 INTRON Mef2	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	22351137	2L_22351137_DEL [dm3] 2L_22351137_DEL [dm6]	GG	A	3.733e^-4	0.735	INTRON CG17018
3R	5965708	3R_5965708_SNP [dm3] 3R_10139986_SNP [dm6]	A	T	3.733e^-4	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3L	14669367	3L_14669367_SNP [dm3] 3L_14676267_SNP [dm6]	T	C	3.742e^-4	0.735	INTRON ome & 1 other
3R	14338537	3R_14338537_SNP [dm3] 3R_18512815_SNP [dm6]	A	C	3.749e^-4	0.735	INTRON fru
3R	15028402	3R_15028402_SNP [dm3] 3R_19202680_SNP [dm6]	C	A	3.755e^-4	0.735	INTERGENIC
3R	15589760	3R_15589760_SNP [dm3] 3R_19764038_SNP [dm6]	T	C	3.756e^-4	0.735	INTRON GluClalpha
3R	23210845	3R_23210845_SNP [dm3] 3R_27385123_SNP [dm6]	T	A	3.756e^-4	0.735	INTRON side
2R	19443305	2R_19443305_SNP [dm3] 2R_23555782_SNP [dm6]	T	C	3.760e^-4	0.735	SYNONYMOUS_CODING Rrp4 UPSTREAM ItgalphaPS5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	2870429	2R_2870429_SNP [dm3] 2R_6982924_SNP [dm6]	G	A	3.773e^-4	0.735	UTR_5_PRIME CG30156 INTRON vimar & 1 other
3R	14995600	3R_14995600_SNP [dm3] 3R_19169878_SNP [dm6]	T	A	3.776e^-4	0.735	UTR_3_PRIME sqz	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	9325519	2L_9325519_SNP [dm3] 2L_9325519_SNP [dm6]	G	C	3.782e^-4	0.735	UPSTREAM CR45456 INTERGENIC
3L	8089102	3L_8089102_SNP [dm3] 3L_8096002_SNP [dm6]	C	A	3.784e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
X	5396445	X_5396445_SNP [dm3] X_5502412_SNP [dm6]	T	A	3.787e^-4	0.735	NON_SYNONYMOUS_CODING CG4151	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	9401959	2L_9401959_SNP [dm3] 2L_9401959_SNP [dm6]	G	C	3.790e^-4	0.735	INTRON Shawl
2R	10514643	2R_10514643_SNP [dm3] 2R_14627138_SNP [dm6]	G	A	3.794e^-4	0.735	INTERGENIC
3L	16729193	3L_16729193_SNP [dm3] 3L_16736093_SNP [dm6]	T	A	3.796e^-4	0.735	INTRON CG9701
2R	1368435	2R_1368435_SNP [dm3] 2R_5480930_SNP [dm6]	T	C	3.803e^-4	0.735	INTRON CG30440	transposable element FlyBase
2L	4659256	2L_4659256_SNP [dm3] 2L_4659256_SNP [dm6]	A	C	3.814e^-4	0.735	INTERGENIC
X	6866462	X_6866462_SNP [dm3] X_6972429_SNP [dm6]	A	C	3.814e^-4	0.735	UTR_3_PRIME CG3040 DOWNSTREAM CG4586
3R	12808680	3R_12808680_SNP [dm3] 3R_16982958_SNP [dm6]	A	T	3.815e^-4	0.735	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	14778636	X_14778636_SNP [dm3] X_14884603_SNP [dm6]	G	A	3.825e^-4	0.735	INTRON Flo2
3L	14668387	3L_14668387_SNP [dm3] 3L_14675287_SNP [dm6]	G	A	3.827e^-4	0.735	SYNONYMOUS_CODING CG4914 DOWNSTREAM tRNA:M3:70Fb INTRON ome	TF binding site mE1_TFBS_sens
3R	12317251	3R_12317251_SNP [dm3] 3R_16491529_SNP [dm6]	C	T	3.831e^-4	0.735	SYNONYMOUS_CODING Cad89D
3L	1853270	3L_1853270_SNP [dm3] 3L_1853270_SNP [dm6]	C	T	3.832e^-4	0.735	INTRON CG13936
3R	5965767	3R_5965767_DEL [dm3] 3R_10140045_DEL [dm6]	TATA	T	3.835e^-4	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3L	10637473	3L_10637473_SNP [dm3] 3L_10644373_SNP [dm6]	C	A	3.836e^-4	0.735	UTR_3_PRIME CG14153 INTRON CG32066
3L	14669634	3L_14669634_SNP [dm3] 3L_14676534_SNP [dm6]	C	T	3.836e^-4	0.735	INTRON ome & 1 other
3R	12809339	3R_12809339_SNP [dm3] 3R_16983617_SNP [dm6]	C	T	3.839e^-4	0.735	UTR_3_PRIME CG18622	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14411490	3R_14411490_SNP [dm3] 3R_18585768_SNP [dm6]	G	C	3.844e^-4	0.735	UPSTREAM fray INTRON fray & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	19187351	2R_19187351_SNP [dm3] 2R_23299828_SNP [dm6]	T	C	3.854e^-4	0.735	INTERGENIC
3L	8089390	3L_8089390_SNP [dm3] 3L_8096290_SNP [dm6]	T	C	3.856e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
3L	8089405	3L_8089405_SNP [dm3] 3L_8096305_SNP [dm6]	C	A	3.856e^-4	0.735	UPSTREAM Ect4 INTRON Ect4
X	14891366	X_14891366_SNP [dm3] X_14997333_SNP [dm6]	T	G	3.856e^-4	0.735	INTRON eag
2L	11590583	2L_11590583_SNP [dm3] 2L_11590583_SNP [dm6]	G	A	3.864e^-4	0.735	DOWNSTREAM Acp33A INTRON kek2
3R	5438579	3R_5438579_SNP [dm3] 3R_9612857_SNP [dm6]	A	T	3.866e^-4	0.735	INTRON CG8312
2L	14050711	2L_14050711_SNP [dm3] 2L_14050711_SNP [dm6]	A	G	3.873e^-4	0.735	INTRON nAChRalpha5
3R	22997122	3R_22997122_SNP [dm3] 3R_27171400_SNP [dm6]	C	T	3.875e^-4	0.735	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
X	7796548	X_7796548_SNP [dm3] X_7902515_SNP [dm6]	C	T	3.880e^-4	0.735	SYNONYMOUS_CODING bys	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	17645647	3R_17645647_SNP [dm3] 3R_21819925_SNP [dm6]	A	T	3.882e^-4	0.735	INTRON CASK
3R	26256477	3R_26256477_SNP [dm3] 3R_30430755_SNP [dm6]	C	T	3.886e^-4	0.735	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3L	18929241	3L_18929241_SNP [dm3] 3L_18936141_SNP [dm6]	A	T	3.890e^-4	0.735	INTRON CG32204
3L	7864448	3L_7864448_SNP [dm3] 3L_7871348_SNP [dm6]	G	C	3.890e^-4	0.735	INTRON CG32365
2R	7537961	2R_7537961_SNP [dm3] 2R_11650456_SNP [dm6]	A	T	3.892e^-4	0.735	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3R	21313360	3R_21313360_SNP [dm3] 3R_25487638_SNP [dm6]	C	T	3.892e^-4	0.735	NON_SYNONYMOUS_CODING Dhap-at	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5782129	3L_5782129_SNP [dm3] 3L_5789029_SNP [dm6]	A	G	3.893e^-4	0.735	DOWNSTREAM Bre1 INTERGENIC
3L	14666869	3L_14666869_SNP [dm3] 3L_14673769_SNP [dm6]	T	A	3.894e^-4	0.735	UPSTREAM tRNA:M3:70Fb DOWNSTREAM tRNA:M3:70Fa & 1 other INTRON ome	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16350290	3L_16350290_SNP [dm3] 3L_16357190_SNP [dm6]	C	T	3.900e^-4	0.736	UPSTREAM CG45057 INTRON CG45057
3L	12522680	3L_12522680_SNP [dm3] 3L_12529580_SNP [dm6]	G	A	3.915e^-4	0.737	DOWNSTREAM Tsf2 INTRON nst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3R	11106825	3R_11106825_SNP [dm3] 3R_15281103_SNP [dm6]	C	T	3.915e^-4	0.737	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	14411841	3R_14411841_SNP [dm3] 3R_18586119_SNP [dm6]	A	C	3.920e^-4	0.737	INTRON fray & 1 other	TF binding site mE1_TFBS_Trl
3R	13472062	3R_13472062_SNP [dm3] 3R_17646340_SNP [dm6]	C	T	3.923e^-4	0.737	UPSTREAM tRNA:CR31579 & 1 other DOWNSTREAM tRNA:CR31578 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13101659	2L_13101659_SNP [dm3] 2L_13101659_SNP [dm6]	G	A	3.923e^-4	0.737	INTERGENIC
3R	15766677	3R_15766677_SNP [dm3] 3R_19940955_SNP [dm6]	G	A	3.928e^-4	0.737	INTRON Hs6st

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.328e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.03456
In_3R_Mo	0.08396

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.2404	0.0221
In_3R_Mo	4.7443	0.0933

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2313 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	22084571	3R_22084571_SNP [dm3] 3R_26258849_SNP [dm6]	G	A	8.381e^-7	0.735	UPSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7501906	3L_7501906_SNP [dm3] 3L_7508806_SNP [dm6]	T	C	1.754e^-6	0.735	INTERGENIC
3R	20790627	3R_20790627_SNP [dm3] 3R_24964905_SNP [dm6]	G	A	2.299e^-6	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11096154	3R_11096154_SNP [dm3] 3R_15270432_SNP [dm6]	A	C	2.933e^-6	0.735	UTR_3_PRIME Zip88E & 1 other
3R	21533153	3R_21533153_SNP [dm3] 3R_25707431_SNP [dm6]	T	A	3.061e^-6	0.735	SYNONYMOUS_CODING LpR2 INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4623998	2R_4623998_DEL [dm3] 2R_8736493_DEL [dm6]	AA	G	5.190e^-6	0.735	UPSTREAM CG42615 INTRON CG8740
3R	22067209	3R_22067209_SNP [dm3] 3R_26241487_SNP [dm6]	G	A	5.427e^-6	0.735	INTRON CR42745
2L	2944268	2L_2944268_SNP [dm3] 2L_2944268_SNP [dm6]	G	T	5.559e^-6	0.735	INTRON lilli	TF binding site mE1_TFBS_cad
2L	6352459	2L_6352459_SNP [dm3] 2L_6352459_SNP [dm6]	A	G	5.670e^-6	0.735	SYNONYMOUS_CODING ppk7
3L	15007559	3L_15007559_SNP [dm3] 3L_15014459_SNP [dm6]	T	G	6.354e^-6	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	5781185	3L_5781185_SNP [dm3] 3L_5788085_SNP [dm6]	T	A	6.893e^-6	0.735	INTERGENIC
3R	17996679	3R_17996679_SNP [dm3] 3R_22170957_SNP [dm6]	T	C	7.303e^-6	0.735	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	21498972	3R_21498972_SNP [dm3] 3R_25673250_SNP [dm6]	C	G	7.851e^-6	0.735	INTRON Lgr3
2R	9638992	2R_9638992_SNP [dm3] 2R_13751487_SNP [dm6]	C	T	8.359e^-6	0.735	INTERGENIC	transposable element FlyBase
3R	22086327	3R_22086327_SNP [dm3] 3R_26260605_SNP [dm6]	C	G	8.449e^-6	0.735	UPSTREAM Ald & 1 other INTRON Ald	TF binding site mE1_TFBS_Trl
3R	23884924	3R_23884924_INS [dm3] 3R_28059202_INS [dm6]	A	AAT	8.710e^-6	0.735	INTRON CG34362
2L	6352468	2L_6352468_SNP [dm3] 2L_6352468_SNP [dm6]	A	C	8.929e^-6	0.735	SYNONYMOUS_CODING ppk7
3R	22088829	3R_22088829_DEL [dm3] 3R_26263107_DEL [dm6]	CCT	C	9.192e^-6	0.735	INTRON CG6154
3R	13637036	3R_13637036_SNP [dm3] 3R_17811314_SNP [dm6]	G	A	9.528e^-6	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	22081511	3R_22081511_SNP [dm3] 3R_26255789_SNP [dm6]	A	G	9.593e^-6	0.735	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
3R	26380195	3R_26380195_SNP [dm3] 3R_30554473_SNP [dm6]	G	T	1.038e^-5	0.735	DOWNSTREAM CG34155 INTRON tmod
3R	22092990	3R_22092990_SNP [dm3] 3R_26267268_SNP [dm6]	G	A	1.189e^-5	0.735	INTRON CG6154
3R	21490152	3R_21490152_SNP [dm3] 3R_25664430_SNP [dm6]	C	G	1.210e^-5	0.735	SYNONYMOUS_CODING RASSF8
3R	22079945	3R_22079945_SNP [dm3] 3R_26254223_SNP [dm6]	A	G	1.239e^-5	0.735	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3R	13637022	3R_13637022_SNP [dm3] 3R_17811300_SNP [dm6]	A	C	1.246e^-5	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
3R	17761542	3R_17761542_SNP [dm3] 3R_21935820_SNP [dm6]	T	A	1.280e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22081344	3R_22081344_SNP [dm3] 3R_26255622_SNP [dm6]	T	C	1.306e^-5	0.735	DOWNSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_bcd
2R	16948672	2R_16948672_SNP [dm3] 2R_21061167_SNP [dm6]	G	A	1.337e^-5	0.735	SYNONYMOUS_CODING mRpL54 UPSTREAM CG15653 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14548724	3L_14548724_SNP [dm3] 3L_14555624_SNP [dm6]	A	T	1.396e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	14548733	3L_14548733_SNP [dm3] 3L_14555633_SNP [dm6]	C	T	1.396e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14748910	2R_14748910_SNP [dm3] 2R_18861405_SNP [dm6]	T	C	1.443e^-5	0.735	SYNONYMOUS_CODING Jheh3
2R	13414378	2R_13414378_SNP [dm3] 2R_17526873_SNP [dm6]	T	C	1.469e^-5	0.735	SYNONYMOUS_CODING Patronin INTRON Patronin
3R	26280146	3R_26280146_SNP [dm3] 3R_30454424_SNP [dm6]	C	T	1.580e^-5	0.735	UPSTREAM aralar1 INTRON aralar1
3R	22077642	3R_22077642_SNP [dm3] 3R_26251920_SNP [dm6]	G	A	1.612e^-5	0.735	EXON CR42745
3R	26373792	3R_26373792_SNP [dm3] 3R_30548070_SNP [dm6]	C	T	1.628e^-5	0.735	INTRON tmod
2L	10562564	2L_10562564_SNP [dm3] 2L_10562564_SNP [dm6]	G	T	1.646e^-5	0.735	INTRON Trim9
2R	10575017	2R_10575017_SNP [dm3] 2R_14687512_SNP [dm6]	G	A	1.655e^-5	0.735	INTRON mspo
2L	5742791	2L_5742791_SNP [dm3] 2L_5742791_SNP [dm6]	A	G	1.660e^-5	0.735	INTRON CG11030
3R	5757593	3R_5757593_SNP [dm3] 3R_9931871_SNP [dm6]	A	G	1.693e^-5	0.735	INTRON Glut4EF
3L	15007502	3L_15007502_SNP [dm3] 3L_15014402_SNP [dm6]	G	A	1.700e^-5	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	22079550	3R_22079550_SNP [dm3] 3R_26253828_SNP [dm6]	G	A	1.738e^-5	0.735	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_zfh1
3L	21397373	3L_21397373_SNP [dm3] 3L_21404273_SNP [dm6]	A	C	1.753e^-5	0.735	INTRON rgn
2L	7177948	2L_7177948_SNP [dm3] 2L_7177948_SNP [dm6]	G	A	1.769e^-5	0.735	EXON CR44613
3R	22090334	3R_22090334_SNP [dm3] 3R_26264612_SNP [dm6]	G	A	1.827e^-5	0.735	INTRON CG6154
3R	22091916	3R_22091916_SNP [dm3] 3R_26266194_SNP [dm6]	T	C	1.830e^-5	0.735	INTRON CG6154
X	3716688	X_3716688_SNP [dm3] X_3822655_SNP [dm6]	T	C	1.886e^-5	0.735	INTRON ec
3L	15007465	3L_15007465_SNP [dm3] 3L_15014365_SNP [dm6]	G	A	1.897e^-5	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	2147705	X_2147705_SNP [dm3] X_2253672_SNP [dm6]	C	T	1.920e^-5	0.735	DOWNSTREAM CG3078 INTRON CG3091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2944558	2L_2944558_SNP [dm3] 2L_2944558_SNP [dm6]	A	T	2.032e^-5	0.735	INTRON lilli	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	22089582	3R_22089582_SNP [dm3] 3R_26263860_SNP [dm6]	G	T	2.063e^-5	0.735	INTRON CG6154
3R	13636917	3R_13636917_SNP [dm3] 3R_17811195_SNP [dm6]	A	T	2.095e^-5	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
3R	22760097	3R_22760097_SNP [dm3] 3R_26934375_SNP [dm6]	T	A	2.099e^-5	0.735	INTRON sda
2R	6269905	2R_6269905_SNP [dm3] 2R_10382400_SNP [dm6]	C	A	2.202e^-5	0.735	INTRON CG42732	TF binding site mE1_TFBS_sbb
2R	6274744	2R_6274744_SNP [dm3] 2R_10387239_SNP [dm6]	A	G	2.228e^-5	0.735	INTRON CG42732
3R	22140378	3R_22140378_SNP [dm3] 3R_26314656_SNP [dm6]	A	T	2.409e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
X	3716517	X_3716517_SNP [dm3] X_3822484_SNP [dm6]	T	G	2.452e^-5	0.735	INTRON ec	TF binding site mE1_TFBS_HSA
3R	14975334	3R_14975334_SNP [dm3] 3R_19149612_SNP [dm6]	G	A	2.520e^-5	0.735	SYNONYMOUS_CODING CG5835 DOWNSTREAM CR44107
3R	22092944	3R_22092944_SNP [dm3] 3R_26267222_SNP [dm6]	A	G	2.758e^-5	0.735	INTRON CG6154
2L	2944201	2L_2944201_SNP [dm3] 2L_2944201_SNP [dm6]	T	C	2.766e^-5	0.735	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	6501555	3L_6501555_SNP [dm3] 3L_6508455_SNP [dm6]	G	C	2.779e^-5	0.735	INTRON sfl
3L	4055842	3L_4055842_SNP [dm3] 3L_4055842_SNP [dm6]	T	C	2.805e^-5	0.735	INTRON CG1136
3L	15007580	3L_15007580_SNP [dm3] 3L_15014480_SNP [dm6]	G	A	2.943e^-5	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12879250	2R_12879250_SNP [dm3] 2R_16991745_SNP [dm6]	G	T	2.993e^-5	0.735	INTRON Cbp53E
2L	2513835	2L_2513835_SNP [dm3] 2L_2513835_SNP [dm6]	A	T	3.034e^-5	0.735	INTERGENIC
3R	25497523	3R_25497523_SNP [dm3] 3R_29671801_SNP [dm6]	A	G	3.049e^-5	0.735	UPSTREAM ppk19 DOWNSTREAM ppk30 INTRON Obp99a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	6233615	3L_6233615_DEL [dm3] 3L_6240515_DEL [dm6]	GA	G	3.103e^-5	0.735	UTR_3_PRIME Mdr65 UPSTREAM CG10226
2R	14496905	2R_14496905_SNP [dm3] 2R_18609400_SNP [dm6]	T	A	3.127e^-5	0.735	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14054537	3R_14054537_SNP [dm3] 3R_18228815_SNP [dm6]	T	C	3.129e^-5	0.735	DOWNSTREAM Mdh2 INTERGENIC
2R	4108546	2R_4108546_SNP [dm3] 2R_8221041_SNP [dm6]	G	A	3.141e^-5	0.735	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22089635	3R_22089635_SNP [dm3] 3R_26263913_SNP [dm6]	A	T	3.294e^-5	0.735	INTRON CG6154
2L	8695949	2L_8695949_SNP [dm3] 2L_8695949_SNP [dm6]	G	C	3.324e^-5	0.735	INTRON Hnf4
3R	22088527	3R_22088527_SNP [dm3] 3R_26262805_SNP [dm6]	T	C	3.345e^-5	0.735	UTR_5_PRIME CG6154
2L	10913121	2L_10913121_SNP [dm3] 2L_10913121_SNP [dm6]	T	A	3.368e^-5	0.735	INTERGENIC
2L	13924797	2L_13924797_DEL [dm3] 2L_13924797_DEL [dm6]	ACCTGTG	A	3.407e^-5	0.735	INTRON Ance-3
3R	10109274	3R_10109274_SNP [dm3] 3R_14283552_SNP [dm6]	C	T	3.473e^-5	0.735	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	19530539	2R_19530539_SNP [dm3] 2R_23643016_SNP [dm6]	T	C	3.478e^-5	0.735	SYNONYMOUS_CODING retn INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	1763430	X_1763430_SNP [dm3] X_1869397_SNP [dm6]	G	A	3.528e^-5	0.735	SYNONYMOUS_CODING CG14803 UPSTREAM Pex5	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	17809949	2R_17809949_SNP [dm3] 2R_21922444_SNP [dm6]	T	C	3.536e^-5	0.735	INTRON Fili
3R	22140023	3R_22140023_SNP [dm3] 3R_26314301_SNP [dm6]	G	T	3.577e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3L	16388169	3L_16388169_SNP [dm3] 3L_16395069_SNP [dm6]	T	C	3.604e^-5	0.735	SYNONYMOUS_CODING Grp INTRON CG44836	TF binding site mE1_TFBS_HSA
3L	11357310	3L_11357310_SNP [dm3] 3L_11364210_SNP [dm6]	G	A	3.625e^-5	0.735	UPSTREAM CR45036 INTRON CG6163
2L	8695951	2L_8695951_SNP [dm3] 2L_8695951_SNP [dm6]	A	C	3.658e^-5	0.735	INTRON Hnf4
3L	12324441	3L_12324441_SNP [dm3] 3L_12331341_SNP [dm6]	T	A	3.688e^-5	0.735	INTRON CG32105	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21900281	3R_21900281_DEL [dm3] 3R_26074559_DEL [dm6]	AA	A	3.732e^-5	0.735	INTERGENIC
3R	22088880	3R_22088880_SNP [dm3] 3R_26263158_SNP [dm6]	G	A	3.766e^-5	0.735	INTRON CG6154
3R	25742689	3R_25742689_SNP [dm3] 3R_29916967_SNP [dm6]	G	A	3.790e^-5	0.735	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3R	6396389	3R_6396389_SNP [dm3] 3R_10570667_SNP [dm6]	T	C	3.811e^-5	0.735	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	12852036	3L_12852036_SNP [dm3] 3L_12858936_SNP [dm6]	C	A	3.837e^-5	0.735	NON_SYNONYMOUS_CODING CG32107
2R	7167706	2R_7167706_SNP [dm3] 2R_11280201_SNP [dm6]	C	T	3.875e^-5	0.735	SYNONYMOUS_CODING Vhl UPSTREAM CG9067 DOWNSTREAM CG9062	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10513960	2L_10513960_SNP [dm3] 2L_10513960_SNP [dm6]	T	C	3.881e^-5	0.735	INTRON Fatp & 1 other
2R	15009183	2R_15009183_SNP [dm3] 2R_19121678_SNP [dm6]	G	C	3.891e^-5	0.735	UTR_3_PRIME 5-HT1A DOWNSTREAM CG15117	TF binding site mE1_TFBS_kn
3L	6367567	3L_6367567_SNP [dm3] 3L_6374467_SNP [dm6]	T	C	3.897e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	20502162	3R_20502162_SNP [dm3] 3R_24676440_SNP [dm6]	A	T	3.956e^-5	0.735	INTRON slo
3R	22082496	3R_22082496_SNP [dm3] 3R_26256774_SNP [dm6]	C	A	4.001e^-5	0.735	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25742654	3R_25742654_SNP [dm3] 3R_29916932_SNP [dm6]	G	C	4.010e^-5	0.735	INTRON trp
2L	5965552	2L_5965552_SNP [dm3] 2L_5965552_SNP [dm6]	A	G	4.024e^-5	0.735	SYNONYMOUS_CODING CG13992 UPSTREAM psd
2R	6274738	2R_6274738_SNP [dm3] 2R_10387233_SNP [dm6]	A	G	4.083e^-5	0.735	INTRON CG42732
2R	4631880	2R_4631880_SNP [dm3] 2R_8744375_SNP [dm6]	C	T	4.088e^-5	0.735	INTRON CG8740 EXON CR44277
3L	5277835	3L_5277835_INS [dm3] 3L_5284735_INS [dm6]	G	GGCATGGCAAAG...	4.109e^-5	0.735	INTERGENIC
3R	8184983	3R_8184983_SNP [dm3] 3R_12359261_SNP [dm6]	A	T	4.203e^-5	0.735	UPSTREAM CG4115 INTERGENIC
3R	23414636	3R_23414636_SNP [dm3] 3R_27588914_SNP [dm6]	C	T	4.290e^-5	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14356564	2R_14356564_SNP [dm3] 2R_18469059_SNP [dm6]	G	A	4.309e^-5	0.735	INTRON CG30116
3R	25742646	3R_25742646_SNP [dm3] 3R_29916924_SNP [dm6]	G	A	4.339e^-5	0.735	INTRON trp
3R	16040367	3R_16040367_SNP [dm3] 3R_20214645_SNP [dm6]	T	C	4.349e^-5	0.735	INTRON Nlg4
X	14410427	X_14410427_SNP [dm3] X_14516394_SNP [dm6]	G	C	4.440e^-5	0.735	UPSTREAM CR44110 INTERGENIC
3R	23414291	3R_23414291_SNP [dm3] 3R_27588569_SNP [dm6]	A	G	4.444e^-5	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4106255	2R_4106255_SNP [dm3] 2R_8218750_SNP [dm6]	T	A	4.472e^-5	0.735	INTRON LRP1
X	11269946	X_11269946_SNP [dm3] X_11375913_SNP [dm6]	G	C	4.558e^-5	0.735	NON_SYNONYMOUS_CODING dlg1 INTRON dlg1
3R	4001681	3R_4001681_DEL [dm3] 3R_8175959_DEL [dm6]	TGTAACGGCAGCCCACTGTG...	T	4.587e^-5	0.735	INTRON grn	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_sens
3R	14975382	3R_14975382_SNP [dm3] 3R_19149660_SNP [dm6]	G	A	4.614e^-5	0.735	DOWNSTREAM CR44107 INTRON CG5835
3R	15644496	3R_15644496_SNP [dm3] 3R_19818774_SNP [dm6]	C	T	4.633e^-5	0.735	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22760144	3R_22760144_SNP [dm3] 3R_26934422_SNP [dm6]	G	C	4.634e^-5	0.735	INTRON sda
3L	9911232	3L_9911232_SNP [dm3] 3L_9918132_SNP [dm6]	A	G	4.642e^-5	0.735	INTRON CG34356
2L	5997936	2L_5997936_SNP [dm3] 2L_5997936_SNP [dm6]	G	A	4.675e^-5	0.735	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	22089112	3R_22089112_SNP [dm3] 3R_26263390_SNP [dm6]	G	T	4.677e^-5	0.735	INTRON CG6154
3L	5386587	3L_5386587_SNP [dm3] 3L_5393487_SNP [dm6]	T	A	4.711e^-5	0.735	INTERGENIC
3L	12351387	3L_12351387_SNP [dm3] 3L_12358287_SNP [dm6]	A	G	4.734e^-5	0.735	INTERGENIC
3L	15007431	3L_15007431_SNP [dm3] 3L_15014331_SNP [dm6]	C	T	4.771e^-5	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3501999	3L_3501999_SNP [dm3] 3L_3501999_SNP [dm6]	T	C	4.935e^-5	0.735	INTRON CG42324
2L	14586585	2L_14586585_SNP [dm3] 2L_14586585_SNP [dm6]	C	T	4.936e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	16862965	X_16862965_SNP [dm3] X_16968932_SNP [dm6]	T	C	4.977e^-5	0.735	UPSTREAM CG9086 DOWNSTREAM CG45002 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5782786	3L_5782786_SNP [dm3] 3L_5789686_SNP [dm6]	G	T	4.979e^-5	0.735	DOWNSTREAM Bre1 INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	10381019	3L_10381019_SNP [dm3] 3L_10387919_SNP [dm6]	G	A	5.023e^-5	0.735	DOWNSTREAM CR45245 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9957635	3L_9957635_SNP [dm3] 3L_9964535_SNP [dm6]	G	C	5.051e^-5	0.735	INTRON CG34356
3L	3430842	3L_3430842_SNP [dm3] 3L_3430842_SNP [dm6]	A	G	5.068e^-5	0.735	INTRON eIF5B
3R	25742643	3R_25742643_SNP [dm3] 3R_29916921_SNP [dm6]	A	G	5.303e^-5	0.735	INTRON trp
3R	22092954	3R_22092954_SNP [dm3] 3R_26267232_SNP [dm6]	G	C	5.318e^-5	0.735	INTRON CG6154
3L	1103424	3L_1103424_DEL [dm3] 3L_1103424_DEL [dm6]	CC	C	5.326e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	22655351	3L_22655351_SNP [dm3] 3L_22662251_SNP [dm6]	G	A	5.333e^-5	0.735	INTERGENIC
3L	19326589	3L_19326589_SNP [dm3] 3L_19333489_SNP [dm6]	C	T	5.335e^-5	0.735	INTRON pip
3R	23414814	3R_23414814_SNP [dm3] 3R_27589092_SNP [dm6]	G	A	5.423e^-5	0.735	NON_SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9157533	3R_9157533_SNP [dm3] 3R_13331811_SNP [dm6]	A	C	5.428e^-5	0.735	INTRON PK2-R2
3R	6362922	3R_6362922_SNP [dm3] 3R_10537200_SNP [dm6]	T	C	5.438e^-5	0.735	INTRON hth	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3L	6694613	3L_6694613_SNP [dm3] 3L_6701513_SNP [dm6]	C	T	5.481e^-5	0.735	INTRON SP1173
3L	18306571	3L_18306571_INS [dm3] 3L_18313471_INS [dm6]	T	TCATGTTT	5.513e^-5	0.735	INTERGENIC
3L	12482522	3L_12482522_SNP [dm3] 3L_12489422_SNP [dm6]	C	T	5.518e^-5	0.735	UPSTREAM CR45681 INTRON CG10660
3R	6362974	3R_6362974_SNP [dm3] 3R_10537252_SNP [dm6]	A	T	5.572e^-5	0.735	INTRON hth	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
3R	25742649	3R_25742649_SNP [dm3] 3R_29916927_SNP [dm6]	A	T	5.579e^-5	0.735	INTRON trp
3R	23415193	3R_23415193_SNP [dm3] 3R_27589471_SNP [dm6]	C	G	5.608e^-5	0.735	NON_SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_chinmo
3R	22087665	3R_22087665_SNP [dm3] 3R_26261943_SNP [dm6]	T	C	5.649e^-5	0.735	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3L	20147197	3L_20147197_SNP [dm3] 3L_20154097_SNP [dm6]	T	C	5.691e^-5	0.735	SYNONYMOUS_CODING CG42674	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8820000	3L_8820000_SNP [dm3] 3L_8826900_SNP [dm6]	G	T	5.800e^-5	0.735	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	26021922	3R_26021922_SNP [dm3] 3R_30196200_SNP [dm6]	T	C	5.816e^-5	0.735	UTR_5_PRIME CG15531 DOWNSTREAM CG9743
2L	5155959	2L_5155959_SNP [dm3] 2L_5155959_SNP [dm6]	C	T	5.853e^-5	0.735	INTRON Msp300	TF binding site mE1_TFBS_chinmo
3L	16871299	3L_16871299_SNP [dm3] 3L_16878199_SNP [dm6]	G	A	5.859e^-5	0.735	SYNONYMOUS_CODING CG32170 INTRON Lmpt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19163215	3R_19163215_SNP [dm3] 3R_23337493_SNP [dm6]	A	G	5.974e^-5	0.735	INTRON pnt	TF binding site mE1_TFBS_inv
3L	5277180	3L_5277180_DEL [dm3] 3L_5284080_DEL [dm6]	AA	T	6.021e^-5	0.735	INTERGENIC
3L	14113278	3L_14113278_SNP [dm3] 3L_14120178_SNP [dm6]	G	T	6.104e^-5	0.735	INTRON Sox21b	TF binding site mE1_TFBS_inv
2R	20195395	2R_20195395_SNP [dm3] 2R_24307872_SNP [dm6]	G	C	6.135e^-5	0.735	INTRON betaTub60D	regulatory region REDfly_CRMs
2R	4294967	2R_4294967_SNP [dm3] 2R_8407462_SNP [dm6]	T	A	6.142e^-5	0.735	INTRON CG2121	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9315698	2L_9315698_SNP [dm3] 2L_9315698_SNP [dm6]	T	G	6.178e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	18520196	3R_18520196_SNP [dm3] 3R_22694474_SNP [dm6]	A	G	6.201e^-5	0.735	SYNONYMOUS_CODING Nup133 UPSTREAM cd
3R	4015022	3R_4015022_SNP [dm3] 3R_8189300_SNP [dm6]	A	T	6.263e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	5781256	3L_5781256_SNP [dm3] 3L_5788156_SNP [dm6]	A	T	6.287e^-5	0.735	INTERGENIC
3R	26380221	3R_26380221_SNP [dm3] 3R_30554499_SNP [dm6]	T	C	6.318e^-5	0.735	DOWNSTREAM CG34155 INTRON tmod
3R	4193112	3R_4193112_SNP [dm3] 3R_8367390_SNP [dm6]	A	G	6.413e^-5	0.735	UTR_3_PRIME CG45263 INTRON CG45263	TF binding site mE1_TFBS_cad
3R	26795888	3R_26795888_SNP [dm3] 3R_30970166_SNP [dm6]	A	G	6.533e^-5	0.735	SYNONYMOUS_CODING 5-HT7	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	4591965	2R_4591965_SNP [dm3] 2R_8704460_SNP [dm6]	G	T	6.568e^-5	0.735	UTR_3_PRIME CG12376
3L	19127335	3L_19127335_SNP [dm3] 3L_19134235_SNP [dm6]	C	G	6.584e^-5	0.735	INTRON CG14082
2R	16178147	2R_16178147_SNP [dm3] 2R_20290642_SNP [dm6]	G	A	6.621e^-5	0.735	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	22076854	3R_22076854_SNP [dm3] 3R_26251132_SNP [dm6]	A	C	6.622e^-5	0.735	INTRON CR42745
2R	20310073	2R_20310073_SNP [dm3] 2R_24422550_SNP [dm6]	T	G	6.667e^-5	0.735	INTRON prom	TF binding site mE1_TFBS_chinmo
3R	22075328	3R_22075328_SNP [dm3] 3R_26249606_SNP [dm6]	A	G	6.678e^-5	0.735	INTRON CR42745
3R	4905278	3R_4905278_SNP [dm3] 3R_9079556_SNP [dm6]	T	C	6.688e^-5	0.735	INTRON pum
3R	4905280	3R_4905280_SNP [dm3] 3R_9079558_SNP [dm6]	T	G	6.688e^-5	0.735	INTRON pum
3L	16809081	3L_16809081_SNP [dm3] 3L_16815981_SNP [dm6]	T	C	6.688e^-5	0.735	INTRON nudC & 1 other
2R	4632191	2R_4632191_SNP [dm3] 2R_8744686_SNP [dm6]	T	A	6.696e^-5	0.735	UPSTREAM CR44277 INTRON CG8740
2L	16879762	2L_16879762_SNP [dm3] 2L_16879762_SNP [dm6]	T	G	6.796e^-5	0.735	NON_SYNONYMOUS_CODING CG34313 UTR_5_PRIME CG31743 UPSTREAM CG32832	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18079793	3R_18079793_SNP [dm3] 3R_22254071_SNP [dm6]	G	A	6.851e^-5	0.735	INTRON SKIP
2R	9270883	2R_9270883_SNP [dm3] 2R_13383378_SNP [dm6]	T	C	6.892e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	4905273	3R_4905273_SNP [dm3] 3R_9079551_SNP [dm6]	G	T	6.899e^-5	0.735	INTRON pum
3R	22092242	3R_22092242_SNP [dm3] 3R_26266520_SNP [dm6]	C	A	6.930e^-5	0.735	INTRON CG6154
3R	20502274	3R_20502274_SNP [dm3] 3R_24676552_SNP [dm6]	A	G	6.939e^-5	0.735	INTRON slo
2L	12703952	2L_12703952_SNP [dm3] 2L_12703952_SNP [dm6]	A	T	6.992e^-5	0.735	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3R	22076907	3R_22076907_SNP [dm3] 3R_26251185_SNP [dm6]	C	A	7.014e^-5	0.735	INTRON CR42745
3R	14133450	3R_14133450_SNP [dm3] 3R_18307728_SNP [dm6]	A	G	7.107e^-5	0.735	INTRON PKD	TF binding site mE1_TFBS_HSA
3R	17997267	3R_17997267_SNP [dm3] 3R_22171545_SNP [dm6]	C	G	7.152e^-5	0.735	INTRON SKIP	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19203807	3R_19203807_SNP [dm3] 3R_23378085_SNP [dm6]	T	C	7.158e^-5	0.735	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
3R	4905296	3R_4905296_SNP [dm3] 3R_9079574_SNP [dm6]	A	G	7.178e^-5	0.735	INTRON pum
2R	6274719	2R_6274719_SNP [dm3] 2R_10387214_SNP [dm6]	A	G	7.219e^-5	0.735	INTRON CG42732
3R	18081003	3R_18081003_SNP [dm3] 3R_22255281_SNP [dm6]	C	G	7.306e^-5	0.735	INTRON SKIP
3R	22760085	3R_22760085_INS [dm3] 3R_26934363_INS [dm6]	C	CCATT	7.322e^-5	0.735	INTRON sda
3R	22760089	3R_22760089_SNP [dm3] 3R_26934367_SNP [dm6]	A	C	7.322e^-5	0.735	INTRON sda
3R	22760092	3R_22760092_SNP [dm3] 3R_26934370_SNP [dm6]	T	C	7.322e^-5	0.735	INTRON sda
2R	18330106	2R_18330106_SNP [dm3] 2R_22442601_SNP [dm6]	C	T	7.332e^-5	0.735	INTERGENIC
3R	14236115	3R_14236115_SNP [dm3] 3R_18410393_SNP [dm6]	C	T	7.419e^-5	0.735	SYNONYMOUS_CODING CG10864 UPSTREAM CG31122 INTRON CG31122	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14548744	3L_14548744_SNP [dm3] 3L_14555644_SNP [dm6]	C	T	7.462e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	3550222	3L_3550222_SNP [dm3] 3L_3550222_SNP [dm6]	C	T	7.642e^-5	0.735	INTRON Eip63E
3R	22077253	3R_22077253_SNP [dm3] 3R_26251531_SNP [dm6]	C	A	7.715e^-5	0.735	EXON CR42745
3R	25260544	3R_25260544_SNP [dm3] 3R_29434822_SNP [dm6]	A	G	7.718e^-5	0.735	INTRON Ptp99A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19151819	3L_19151819_SNP [dm3] 3L_19158719_SNP [dm6]	T	C	7.737e^-5	0.735	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	26303200	3R_26303200_SNP [dm3] 3R_30477478_SNP [dm6]	C	A	7.780e^-5	0.735	SYNONYMOUS_CODING spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13098292	3L_13098292_SNP [dm3] 3L_13105192_SNP [dm6]	T	A	7.787e^-5	0.735	INTERGENIC
3L	16511069	3L_16511069_DEL [dm3] 3L_16517969_DEL [dm6]	AACCA	A	7.806e^-5	0.735	INTRON CG43373
3R	22076909	3R_22076909_INS [dm3] 3R_26251187_INS [dm6]	A	AGTACAGC	7.819e^-5	0.735	INTRON CR42745
2L	9315700	2L_9315700_SNP [dm3] 2L_9315700_SNP [dm6]	C	T	7.850e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4015040	3R_4015040_SNP [dm3] 3R_8189318_SNP [dm6]	G	A	7.886e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5997298	2L_5997298_SNP [dm3] 2L_5997298_SNP [dm6]	C	T	7.916e^-5	0.735	UPSTREAM lid INTRON lid	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	5965351	3R_5965351_SNP [dm3] 3R_10139629_SNP [dm6]	C	A	7.920e^-5	0.735	UTR_5_PRIME tws DOWNSTREAM TAF1B	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23413170	3R_23413170_SNP [dm3] 3R_27587448_SNP [dm6]	G	A	7.969e^-5	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16511053	3L_16511053_SNP [dm3] 3L_16517953_SNP [dm6]	G	A	8.013e^-5	0.735	INTRON CG43373
3L	7139397	3L_7139397_SNP [dm3] 3L_7146297_SNP [dm6]	C	T	8.072e^-5	0.735	SYNONYMOUS_CODING corn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	6694619	3L_6694619_SNP [dm3] 3L_6701519_SNP [dm6]	T	A	8.238e^-5	0.735	INTRON SP1173
3R	20517793	3R_20517793_SNP [dm3] 3R_24692071_SNP [dm6]	T	A	8.240e^-5	0.735	INTRON slo
2R	10507235	2R_10507235_SNP [dm3] 2R_14619730_SNP [dm6]	T	A	8.248e^-5	0.735	DOWNSTREAM CG12863 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	18300810	3R_18300810_SNP [dm3] 3R_22475088_SNP [dm6]	C	G	8.255e^-5	0.735	INTRON Nrx-1
3L	16689249	3L_16689249_SNP [dm3] 3L_16696149_SNP [dm6]	C	A	8.403e^-5	0.735	INTRON CR45179 & 2 others
3L	14113498	3L_14113498_SNP [dm3] 3L_14120398_SNP [dm6]	C	G	8.411e^-5	0.735	INTRON Sox21b	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3L	5386727	3L_5386727_SNP [dm3] 3L_5393627_SNP [dm6]	G	A	8.417e^-5	0.735	INTERGENIC
2R	4632241	2R_4632241_DEL [dm3] 2R_8744736_DEL [dm6]	AAA	A	8.448e^-5	0.735	UPSTREAM CR44277 INTRON CG8740
2R	16895263	2R_16895263_INS [dm3] 2R_21007758_INS [dm6]	C	CTTTGTCC	8.472e^-5	0.735	UTR_3_PRIME CG30291 DOWNSTREAM CG10543
2R	12850731	2R_12850731_SNP [dm3] 2R_16963226_SNP [dm6]	T	G	8.522e^-5	0.735	INTERGENIC
2R	998923	2R_998923_SNP [dm3] 2R_5111418_SNP [dm6]	A	T	8.546e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16511067	3L_16511067_INS [dm3] 3L_16517967_INS [dm6]	C	CGATAT	8.546e^-5	0.735	INTRON CG43373
3R	10109742	3R_10109742_SNP [dm3] 3R_14284020_SNP [dm6]	T	A	8.555e^-5	0.735	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	5435105	3L_5435105_SNP [dm3] 3L_5442005_SNP [dm6]	A	G	8.557e^-5	0.735	UTR_3_PRIME CG34391
3L	13962392	3L_13962392_SNP [dm3] 3L_13969292_SNP [dm6]	G	A	8.594e^-5	0.735	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad
3L	12449319	3L_12449319_SNP [dm3] 3L_12456219_SNP [dm6]	C	T	8.648e^-5	0.735	INTERGENIC
3R	22089516	3R_22089516_SNP [dm3] 3R_26263794_SNP [dm6]	C	T	8.657e^-5	0.735	INTRON CG6154
3L	14548660	3L_14548660_SNP [dm3] 3L_14555560_SNP [dm6]	C	T	8.732e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22080376	3R_22080376_SNP [dm3] 3R_26254654_SNP [dm6]	A	G	8.772e^-5	0.735	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1
3L	10508710	3L_10508710_INS [dm3] 3L_10515610_INS [dm6]	A	AG	8.882e^-5	0.735	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19147068	3R_19147068_SNP [dm3] 3R_23321346_SNP [dm6]	G	T	8.899e^-5	0.735	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22075367	3R_22075367_SNP [dm3] 3R_26249645_SNP [dm6]	G	C	8.981e^-5	0.735	INTRON CR42745
3L	13016760	3L_13016760_SNP [dm3] 3L_13023660_SNP [dm6]	T	C	9.030e^-5	0.735	UPSTREAM AdenoK & 1 other DOWNSTREAM snoRNA:Me28S-A774b INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22077038	3R_22077038_DEL [dm3] 3R_26251316_DEL [dm6]	ATACACTTATATA...	A	9.286e^-5	0.735	SPLICE_SITE_ACCEPTOR CR42745 INTRON CR42745
2R	14556608	2R_14556608_SNP [dm3] 2R_18669103_SNP [dm6]	A	G	9.364e^-5	0.735	INTRON edl
2R	998494	2R_998494_SNP [dm3] 2R_5110989_SNP [dm6]	C	A	9.398e^-5	0.735	INTERGENIC
3R	10108882	3R_10108882_SNP [dm3] 3R_14283160_SNP [dm6]	A	G	9.400e^-5	0.735	INTRON trx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	9315682	2L_9315682_SNP [dm3] 2L_9315682_SNP [dm6]	G	A	9.407e^-5	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25761017	3R_25761017_SNP [dm3] 3R_29935295_SNP [dm6]	G	A	9.463e^-5	0.735	SPLICE_SITE_REGION eIF2B-alpha UPSTREAM CG15523 DOWNSTREAM CG42557 & 1 other INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	12329412	2R_12329412_SNP [dm3] 2R_16441907_SNP [dm6]	C	T	9.526e^-5	0.735	INTERGENIC
3R	18133574	3R_18133574_SNP [dm3] 3R_22307852_SNP [dm6]	T	A	9.549e^-5	0.735	DOWNSTREAM CG34377 INTERGENIC
2R	19187351	2R_19187351_SNP [dm3] 2R_23299828_SNP [dm6]	T	C	9.570e^-5	0.735	INTERGENIC
3L	14083726	3L_14083726_SNP [dm3] 3L_14090626_SNP [dm6]	C	A	9.621e^-5	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	3550148	3L_3550148_SNP [dm3] 3L_3550148_SNP [dm6]	T	G	9.721e^-5	0.735	INTRON Eip63E
2R	5076838	2R_5076838_SNP [dm3] 2R_9189333_SNP [dm6]	C	T	9.781e^-5	0.735	INTRON CG8026 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22760102	3R_22760102_DEL [dm3] 3R_26934380_DEL [dm6]	TT	T	9.808e^-5	0.735	INTRON sda
3L	16511051	3L_16511051_SNP [dm3] 3L_16517951_SNP [dm6]	T	G	9.809e^-5	0.735	INTRON CG43373
X	12154839	X_12154839_SNP [dm3] X_12260806_SNP [dm6]	T	C	9.837e^-5	0.735	INTRON Ten-a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8226329	3L_8226329_INS [dm3] 3L_8233229_INS [dm6]	T	TC	9.855e^-5	0.735	INTRON CG7213
3R	22081655	3R_22081655_SNP [dm3] 3R_26255933_SNP [dm6]	A	T	9.860e^-5	0.735	DOWNSTREAM Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi
3L	5515540	3L_5515540_SNP [dm3] 3L_5522440_SNP [dm6]	C	A	9.937e^-5	0.735	INTRON Lkr
2L	10178047	2L_10178047_SNP [dm3] 2L_10178047_SNP [dm6]	A	T	1.018e^-4	0.735	UTR_5_PRIME CG44153
3L	5386734	3L_5386734_SNP [dm3] 3L_5393634_SNP [dm6]	T	C	1.025e^-4	0.735	INTERGENIC
3R	18986851	3R_18986851_SNP [dm3] 3R_23161129_SNP [dm6]	T	C	1.025e^-4	0.735	SYNONYMOUS_CODING CG13829
3R	22075379	3R_22075379_SNP [dm3] 3R_26249657_SNP [dm6]	C	T	1.032e^-4	0.735	INTRON CR42745
3R	6396582	3R_6396582_SNP [dm3] 3R_10570860_SNP [dm6]	A	G	1.034e^-4	0.735	INTRON hth	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	25761665	3R_25761665_SNP [dm3] 3R_29935943_SNP [dm6]	G	A	1.034e^-4	0.735	UPSTREAM CG15523 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	20517304	3R_20517304_SNP [dm3] 3R_24691582_SNP [dm6]	C	T	1.040e^-4	0.735	SYNONYMOUS_CODING slo
2R	4612580	2R_4612580_SNP [dm3] 2R_8725075_SNP [dm6]	A	T	1.041e^-4	0.735	DOWNSTREAM snoRNA:gcl-a INTRON gcl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	12063851	3L_12063851_SNP [dm3] 3L_12070751_SNP [dm6]	G	T	1.041e^-4	0.735	INTRON Sema-5c
3L	13016350	3L_13016350_SNP [dm3] 3L_13023250_SNP [dm6]	A	C	1.044e^-4	0.735	UPSTREAM RpS12 & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	536546	2L_536546_SNP [dm3] 2L_536546_SNP [dm6]	G	C	1.051e^-4	0.735	NON_SYNONYMOUS_CODING ush	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23416417	3R_23416417_SNP [dm3] 3R_27590695_SNP [dm6]	G	A	1.052e^-4	0.735	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14773944	3R_14773944_SNP [dm3] 3R_18948222_SNP [dm6]	A	G	1.058e^-4	0.735	INTRON CG42613
X	13736708	X_13736708_SNP [dm3] X_13842675_SNP [dm6]	T	G	1.060e^-4	0.735	INTRON AMPdeam
3L	14051273	3L_14051273_SNP [dm3] 3L_14058173_SNP [dm6]	A	G	1.060e^-4	0.735	INTRON CG32138
3L	19328467	3L_19328467_SNP [dm3] 3L_19335367_SNP [dm6]	A	T	1.067e^-4	0.735	INTRON pip
2R	17095242	2R_17095242_SNP [dm3] 2R_21207737_SNP [dm6]	C	T	1.074e^-4	0.735	INTRON CG44245 & 1 other
3L	12511947	3L_12511947_SNP [dm3] 3L_12518847_SNP [dm6]	A	C	1.078e^-4	0.735	SYNONYMOUS_CODING tral	TF binding site mE1_TFBS_HSA
X	4277288	X_4277288_SNP [dm3] X_4383255_SNP [dm6]	G	A	1.079e^-4	0.735	DOWNSTREAM CG12688 INTERGENIC
3R	23318679	3R_23318679_SNP [dm3] 3R_27492957_SNP [dm6]	C	G	1.080e^-4	0.735	INTERGENIC
2L	15170229	2L_15170229_SNP [dm3] 2L_15170229_SNP [dm6]	C	T	1.081e^-4	0.735	INTRON CG4168
X	5396445	X_5396445_SNP [dm3] X_5502412_SNP [dm6]	T	A	1.083e^-4	0.735	NON_SYNONYMOUS_CODING CG4151	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	18881832	3R_18881832_SNP [dm3] 3R_23056110_SNP [dm6]	C	T	1.095e^-4	0.735	SYNONYMOUS_CODING CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21535644	3R_21535644_SNP [dm3] 3R_25709922_SNP [dm6]	A	G	1.101e^-4	0.735	INTRON LpR2
2R	4106240	2R_4106240_SNP [dm3] 2R_8218735_SNP [dm6]	C	T	1.105e^-4	0.735	INTRON LRP1
3R	19163206	3R_19163206_SNP [dm3] 3R_23337484_SNP [dm6]	C	A	1.111e^-4	0.735	INTRON pnt	TF binding site mE1_TFBS_inv
2R	16179002	2R_16179002_SNP [dm3] 2R_20291497_SNP [dm6]	T	C	1.117e^-4	0.735	DOWNSTREAM CkIIbeta2 INTRON Cpr56F
3R	18950463	3R_18950463_SNP [dm3] 3R_23124741_SNP [dm6]	C	T	1.117e^-4	0.735	SYNONYMOUS_CODING CG31365 DOWNSTREAM CenB1A	TF binding site mE1_TFBS_sens
X	3716183	X_3716183_SNP [dm3] X_3822150_SNP [dm6]	T	A	1.121e^-4	0.735	INTRON ec	TF binding site mE1_TFBS_HSA
2L	2944182	2L_2944182_SNP [dm3] 2L_2944182_SNP [dm6]	A	C	1.126e^-4	0.735	INTRON lilli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3L	15007177	3L_15007177_SNP [dm3] 3L_15014077_SNP [dm6]	T	G	1.130e^-4	0.735	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	18166411	2R_18166411_SNP [dm3] 2R_22278906_SNP [dm6]	G	A	1.136e^-4	0.735	INTRON dve
2R	8013854	2R_8013854_SNP [dm3] 2R_12126349_SNP [dm6]	G	A	1.142e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	24758230	3R_24758230_SNP [dm3] 3R_28932508_SNP [dm6]	C	T	1.144e^-4	0.735	INTRON CG14521
3L	22399812	3L_22399812_SNP [dm3] 3L_22406712_SNP [dm6]	A	T	1.145e^-4	0.735	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	26276589	3R_26276589_SNP [dm3] 3R_30450867_SNP [dm6]	T	C	1.145e^-4	0.735	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25742824	3R_25742824_SNP [dm3] 3R_29917102_SNP [dm6]	A	G	1.146e^-4	0.735	SYNONYMOUS_CODING trp UTR_3_PRIME trp
3R	20517502	3R_20517502_SNP [dm3] 3R_24691780_SNP [dm6]	A	G	1.147e^-4	0.735	SPLICE_SITE_REGION slo SYNONYMOUS_CODING slo
2R	2406899	2R_2406899_SNP [dm3] 2R_6519394_SNP [dm6]	G	A	1.147e^-4	0.735	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9315695	2L_9315695_INS [dm3] 2L_9315695_INS [dm6]	A	ACC	1.148e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5965708	3R_5965708_SNP [dm3] 3R_10139986_SNP [dm6]	A	T	1.149e^-4	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3L	3620216	3L_3620216_SNP [dm3] 3L_3620216_SNP [dm6]	G	A	1.156e^-4	0.735	DOWNSTREAM CG14974 INTERGENIC
2L	14148431	2L_14148431_DEL [dm3] 2L_14148431_DEL [dm6]	TTTAT	T	1.158e^-4	0.735	INTRON CG17341
3L	7141174	3L_7141174_SNP [dm3] 3L_7148074_SNP [dm6]	G	A	1.164e^-4	0.735	INTRON corn	TF binding site mE1_TFBS_cad
3L	14703827	3L_14703827_SNP [dm3] 3L_14710727_SNP [dm6]	A	T	1.178e^-4	0.735	INTRON ome
3R	10109503	3R_10109503_SNP [dm3] 3R_14283781_SNP [dm6]	C	A	1.179e^-4	0.735	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	764324	2L_764324_SNP [dm3] 2L_764324_SNP [dm6]	A	G	1.181e^-4	0.735	INTERGENIC
2R	14748952	2R_14748952_SNP [dm3] 2R_18861447_SNP [dm6]	G	A	1.185e^-4	0.735	SYNONYMOUS_CODING Jheh3
X	9166141	X_9166141_SNP [dm3] X_9272108_SNP [dm6]	C	T	1.185e^-4	0.735	SYNONYMOUS_CODING Cfp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25770240	3R_25770240_SNP [dm3] 3R_29944518_SNP [dm6]	A	G	1.187e^-4	0.735	INTRON CG15523
2L	14585722	2L_14585722_SNP [dm3] 2L_14585722_SNP [dm6]	T	A	1.188e^-4	0.735	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	17735162	2L_17735162_SNP [dm3] 2L_17735162_SNP [dm6]	G	T	1.191e^-4	0.735	INTRON CadN	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13637118	3R_13637118_SNP [dm3] 3R_17811396_SNP [dm6]	T	A	1.193e^-4	0.735	UPSTREAM tinc & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA
3R	25798771	3R_25798771_SNP [dm3] 3R_29973049_SNP [dm6]	G	A	1.197e^-4	0.735	INTERGENIC
2R	12273662	2R_12273662_SNP [dm3] 2R_16386157_SNP [dm6]	T	C	1.197e^-4	0.735	UPSTREAM Sema-2b DOWNSTREAM CG43187 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	5965789	3R_5965789_SNP [dm3] 3R_10140067_SNP [dm6]	C	T	1.199e^-4	0.735	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	13937389	3R_13937389_SNP [dm3] 3R_18111667_SNP [dm6]	T	C	1.203e^-4	0.735	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10746202	2L_10746202_SNP [dm3] 2L_10746202_SNP [dm6]	C	A	1.204e^-4	0.735	INTRON CG17124
X	12702780	X_12702780_SNP [dm3] X_12808747_SNP [dm6]	A	C	1.207e^-4	0.735	INTRON Pde9
3R	22093692	3R_22093692_SNP [dm3] 3R_26267970_SNP [dm6]	G	T	1.211e^-4	0.735	UPSTREAM CG6154 INTRON CG6154
3L	17978597	3L_17978597_SNP [dm3] 3L_17985497_SNP [dm6]	G	A	1.214e^-4	0.735	INTRON Eip75B
2R	20193571	2R_20193571_SNP [dm3] 2R_24306048_SNP [dm6]	T	G	1.215e^-4	0.735	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10387203	3L_10387203_SNP [dm3] 3L_10394103_SNP [dm6]	C	A	1.218e^-4	0.735	INTERGENIC
3R	20936123	3R_20936123_SNP [dm3] 3R_25110401_SNP [dm6]	G	A	1.218e^-4	0.735	INTRON CG13650
2R	4632168	2R_4632168_SNP [dm3] 2R_8744663_SNP [dm6]	A	C	1.222e^-4	0.735	UPSTREAM CR44277 INTRON CG8740
X	4273585	X_4273585_SNP [dm3] X_4379552_SNP [dm6]	A	T	1.222e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_sens
X	4273629	X_4273629_SNP [dm3] X_4379596_SNP [dm6]	C	T	1.222e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_sens
2L	13641380	2L_13641380_SNP [dm3] 2L_13641380_SNP [dm6]	C	T	1.224e^-4	0.735	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9028154	2L_9028154_SNP [dm3] 2L_9028154_SNP [dm6]	T	C	1.227e^-4	0.735	INTRON CG9582 & 1 other
3L	11225353	3L_11225353_SNP [dm3] 3L_11232253_SNP [dm6]	T	A	1.229e^-4	0.735	UPSTREAM CR45405 DOWNSTREAM Ir68a INTERGENIC
3R	26991867	3R_26991867_SNP [dm3] 3R_31166145_SNP [dm6]	G	A	1.236e^-4	0.735	INTRON Gycbeta100B & 1 other
3L	13139121	3L_13139121_SNP [dm3] 3L_13146021_SNP [dm6]	T	G	1.246e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11097435	3R_11097435_DEL [dm3] 3R_15271713_DEL [dm6]	ACTGCGTCAA	A	1.248e^-4	0.735		TF binding site mE1_TFBS_sens
3L	2650818	3L_2650818_SNP [dm3] 3L_2650818_SNP [dm6]	A	G	1.251e^-4	0.735	SYNONYMOUS_CODING Aats-pro UTR_3_PRIME Aats-pro DOWNSTREAM CG1246
2R	8013861	2R_8013861_SNP [dm3] 2R_12126356_SNP [dm6]	T	C	1.252e^-4	0.735	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	19140648	3L_19140648_SNP [dm3] 3L_19147548_SNP [dm6]	C	G	1.260e^-4	0.735	UPSTREAM fz2 INTRON fz2
3L	7025871	3L_7025871_SNP [dm3] 3L_7032771_SNP [dm6]	T	A	1.260e^-4	0.735	INTRON Mp
3R	22087876	3R_22087876_SNP [dm3] 3R_26262154_SNP [dm6]	C	T	1.261e^-4	0.735	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13641336	2L_13641336_SNP [dm3] 2L_13641336_SNP [dm6]	T	G	1.264e^-4	0.735	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11289978	2L_11289978_SNP [dm3] 2L_11289978_SNP [dm6]	C	T	1.266e^-4	0.735	DOWNSTREAM CR43409 INTERGENIC
3L	12934899	3L_12934899_INS [dm3] 3L_12941799_INS [dm6]	T	TT	1.282e^-4	0.742	INTERGENIC
2L	6604674	2L_6604674_SNP [dm3] 2L_6604674_SNP [dm6]	G	C	1.294e^-4	0.747	INTERGENIC
3L	8846249	3L_8846249_SNP [dm3] 3L_8853149_SNP [dm6]	T	G	1.299e^-4	0.747	INTRON dally
3L	11180528	3L_11180528_SNP [dm3] 3L_11187428_SNP [dm6]	C	T	1.302e^-4	0.747	INTRON GlcAT-P
3R	5965767	3R_5965767_DEL [dm3] 3R_10140045_DEL [dm6]	TATA	T	1.310e^-4	0.747	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
X	15474764	X_15474764_SNP [dm3] X_15580731_SNP [dm6]	T	C	1.314e^-4	0.747	DOWNSTREAM CG7872 & 1 other INTERGENIC
2R	14496904	2R_14496904_SNP [dm3] 2R_18609399_SNP [dm6]	G	T	1.314e^-4	0.747	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5571822	3L_5571822_SNP [dm3] 3L_5578722_SNP [dm6]	A	G	1.320e^-4	0.747	INTERGENIC
2L	10457135	2L_10457135_SNP [dm3] 2L_10457135_SNP [dm6]	C	A	1.326e^-4	0.747	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12703966	2L_12703966_SNP [dm3] 2L_12703966_SNP [dm6]	G	A	1.327e^-4	0.747	UPSTREAM spict INTRON CG5776	TF binding site mE1_TFBS_sens
3R	22080046	3R_22080046_SNP [dm3] 3R_26254324_SNP [dm6]	A	C	1.333e^-4	0.748	UTR_3_PRIME Ald DOWNSTREAM Ald	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_zfh1
X	8863007	X_8863007_DEL [dm3] X_8968974_DEL [dm6]	GCCCACCGAGCTTACAATTC...	ATTTTTCATCATTTT...	1.345e^-4	0.751	INTRON rdgA
3L	19794971	3L_19794971_SNP [dm3] 3L_19801871_SNP [dm6]	G	T	1.349e^-4	0.751	NON_SYNONYMOUS_CODING Ir76a UPSTREAM CG14102
X	16783991	X_16783991_SNP [dm3] X_16889958_SNP [dm6]	T	C	1.361e^-4	0.751	UPSTREAM CR43768 INTRON CG13002
X	8750853	X_8750853_SNP [dm3] X_8856820_SNP [dm6]	T	A	1.366e^-4	0.751	INTRON CG12075
2R	12329385	2R_12329385_SNP [dm3] 2R_16441880_SNP [dm6]	G	T	1.366e^-4	0.751	INTERGENIC
3L	3867710	3L_3867710_INS [dm3] 3L_3867710_INS [dm6]	T	TTCCTTC	1.367e^-4	0.751	INTERGENIC
3L	12449432	3L_12449432_SNP [dm3] 3L_12456332_SNP [dm6]	A	G	1.367e^-4	0.751	INTERGENIC
3L	13016643	3L_13016643_SNP [dm3] 3L_13023543_SNP [dm6]	G	A	1.369e^-4	0.751	UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	1411505	3L_1411505_SNP [dm3] 3L_1411505_SNP [dm6]	A	C	1.376e^-4	0.752	INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	11357381	3L_11357381_SNP [dm3] 3L_11364281_SNP [dm6]	A	G	1.380e^-4	0.753	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
X	14655377	X_14655377_INS [dm3] X_14761344_INS [dm6]	C	CTCCAACGAATGTCTTTTTA...	1.386e^-4	0.753	INTRON CG15890
2L	1949280	2L_1949280_SNP [dm3] 2L_1949280_SNP [dm6]	T	C	1.388e^-4	0.753	DOWNSTREAM erm INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	10913967	X_10913967_SNP [dm3] X_11019934_SNP [dm6]	T	C	1.404e^-4	0.754	INTRON CG42339
2L	5066313	2L_5066313_SNP [dm3] 2L_5066313_SNP [dm6]	T	A	1.410e^-4	0.754	INTRON qtc
3L	18628245	3L_18628245_SNP [dm3] 3L_18635145_SNP [dm6]	C	T	1.413e^-4	0.754	INTRON MYPT-75D
3R	14834154	3R_14834154_SNP [dm3] 3R_19008432_SNP [dm6]	G	T	1.414e^-4	0.754	INTRON gukh	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	5965746	3R_5965746_SNP [dm3] 3R_10140024_SNP [dm6]	C	A	1.415e^-4	0.754	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2R	18329719	2R_18329719_SNP [dm3] 2R_22442214_SNP [dm6]	A	T	1.417e^-4	0.754	INTERGENIC
3R	23417309	3R_23417309_SNP [dm3] 3R_27591587_SNP [dm6]	C	G	1.436e^-4	0.754	INTRON CG5639
3R	18520115	3R_18520115_SNP [dm3] 3R_22694393_SNP [dm6]	A	G	1.442e^-4	0.754	SYNONYMOUS_CODING Nup133 UPSTREAM cd	TF binding site mE1_TFBS_cad
3R	27056814	3R_27056814_SNP [dm3] 3R_31231092_SNP [dm6]	C	G	1.448e^-4	0.754	UTR_3_PRIME CG12054 DOWNSTREAM CG15563	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5653815	3L_5653815_SNP [dm3] 3L_5660715_SNP [dm6]	G	T	1.461e^-4	0.754	SYNONYMOUS_CODING Sse INTRON sif
3R	18079582	3R_18079582_SNP [dm3] 3R_22253860_SNP [dm6]	G	T	1.468e^-4	0.754	INTRON SKIP
2L	14585623	2L_14585623_SNP [dm3] 2L_14585623_SNP [dm6]	G	A	1.468e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	4135985	2L_4135985_SNP [dm3] 2L_4135985_SNP [dm6]	G	A	1.469e^-4	0.754	INTERGENIC
3R	22075602	3R_22075602_SNP [dm3] 3R_26249880_SNP [dm6]	G	A	1.475e^-4	0.754	INTRON CR42745
3R	22712314	3R_22712314_SNP [dm3] 3R_26886592_SNP [dm6]	C	T	1.478e^-4	0.754	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22097537	3R_22097537_SNP [dm3] 3R_26271815_SNP [dm6]	G	C	1.480e^-4	0.754	INTRON CG6154
3R	11091306	3R_11091306_SNP [dm3] 3R_15265584_SNP [dm6]	C	T	1.487e^-4	0.754	UPSTREAM Oscp DOWNSTREAM Set INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9990682	3L_9990682_SNP [dm3] 3L_9997582_SNP [dm6]	A	C	1.490e^-4	0.754	INTRON dpr6
3R	24780189	3R_24780189_SNP [dm3] 3R_28954467_SNP [dm6]	A	G	1.501e^-4	0.754	INTRON CG14521
3R	9756445	3R_9756445_SNP [dm3] 3R_13930723_SNP [dm6]	G	A	1.502e^-4	0.754	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3R	22151009	3R_22151009_SNP [dm3] 3R_26325287_SNP [dm6]	T	C	1.506e^-4	0.754	INTRON CG33970 EXON CR42765	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25758549	3R_25758549_SNP [dm3] 3R_29932827_SNP [dm6]	G	T	1.517e^-4	0.754	UPSTREAM CG42557 & 1 other INTRON Cog7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9157409	3R_9157409_INS [dm3] 3R_13331687_INS [dm6]	G	GGCAATTAGG	1.528e^-4	0.754	INTRON PK2-R2
2R	20195046	2R_20195046_SNP [dm3] 2R_24307523_SNP [dm6]	T	G	1.530e^-4	0.754	INTRON betaTub60D	regulatory region REDfly_CRMs
3R	25758510	3R_25758510_SNP [dm3] 3R_29932788_SNP [dm6]	G	C	1.530e^-4	0.754	SYNONYMOUS_CODING Cog7 UPSTREAM CG42557 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13016632	3L_13016632_SNP [dm3] 3L_13023532_SNP [dm6]	A	G	1.532e^-4	0.754	SPLICE_SITE_REGION RpS12 UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13016645	3L_13016645_SNP [dm3] 3L_13023545_SNP [dm6]	G	A	1.532e^-4	0.754	UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13016649	3L_13016649_SNP [dm3] 3L_13023549_SNP [dm6]	T	A	1.532e^-4	0.754	UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	17899492	3R_17899492_SNP [dm3] 3R_22073770_SNP [dm6]	A	C	1.538e^-4	0.754	DOWNSTREAM how INTRON how
3L	8538720	3L_8538720_SNP [dm3] 3L_8545620_SNP [dm6]	T	A	1.539e^-4	0.754	INTRON rhea	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl
3R	22504649	3R_22504649_SNP [dm3] 3R_26678927_SNP [dm6]	G	A	1.545e^-4	0.754	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26191932	3R_26191932_SNP [dm3] 3R_30366210_SNP [dm6]	A	T	1.553e^-4	0.754	UTR_3_PRIME hdc
3R	15739299	3R_15739299_SNP [dm3] 3R_19913577_SNP [dm6]	A	G	1.553e^-4	0.754	UTR_3_PRIME RhoGAP92B DOWNSTREAM CG42508 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	11356368	3L_11356368_SNP [dm3] 3L_11363268_SNP [dm6]	C	T	1.559e^-4	0.754	INTRON CG6163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5965449	2L_5965449_SNP [dm3] 2L_5965449_SNP [dm6]	A	G	1.567e^-4	0.754	UTR_3_PRIME CG13992 UPSTREAM psd
3L	13016633	3L_13016633_SNP [dm3] 3L_13023533_SNP [dm6]	A	G	1.570e^-4	0.754	SPLICE_SITE_REGION RpS12 UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	4623868	2R_4623868_SNP [dm3] 2R_8736363_SNP [dm6]	A	G	1.577e^-4	0.754	UTR_5_PRIME CG8740
3R	15599531	3R_15599531_INS [dm3] 3R_19773809_INS [dm6]	A	AC	1.580e^-4	0.754	UPSTREAM CG6300 INTRON GluClalpha	TF binding site mE1_TFBS_bab1
2L	10913095	2L_10913095_SNP [dm3] 2L_10913095_SNP [dm6]	C	T	1.585e^-4	0.754	INTERGENIC
2L	17722866	2L_17722866_SNP [dm3] 2L_17722866_SNP [dm6]	C	A	1.588e^-4	0.754	INTRON CadN	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17736258	2R_17736258_SNP [dm3] 2R_21848753_SNP [dm6]	T	A	1.593e^-4	0.754	UPSTREAM tRNA:CR30406 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
3R	6363070	3R_6363070_SNP [dm3] 3R_10537348_SNP [dm6]	C	G	1.593e^-4	0.754	INTRON hth	enhancer mE1_CBP_Enhancers
3R	26595250	3R_26595250_SNP [dm3] 3R_30769528_SNP [dm6]	G	A	1.595e^-4	0.754	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18387043	2L_18387043_SNP [dm3] 2L_18387043_SNP [dm6]	C	G	1.596e^-4	0.754	UTR_3_PRIME Fas3 INTRON Fas3
2L	10457150	2L_10457150_SNP [dm3] 2L_10457150_SNP [dm6]	C	T	1.599e^-4	0.754	UPSTREAM LM408 INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22286328	3R_22286328_SNP [dm3] 3R_26460606_SNP [dm6]	C	T	1.603e^-4	0.754	SYNONYMOUS_CODING CG14238 UPSTREAM CG5455
3L	14205903	3L_14205903_SNP [dm3] 3L_14212803_SNP [dm6]	T	A	1.610e^-4	0.754	INTRON nuf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	11322143	2R_11322143_SNP [dm3] 2R_15434638_SNP [dm6]	G	A	1.611e^-4	0.754	INTRON CG43729	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2124691	X_2124691_SNP [dm3] X_2230658_SNP [dm6]	T	A	1.620e^-4	0.754	SYNONYMOUS_CODING pcx
X	14607522	X_14607522_SNP [dm3] X_14713489_SNP [dm6]	C	A	1.620e^-4	0.754	INTRON NetB
3R	25758820	3R_25758820_SNP [dm3] 3R_29933098_SNP [dm6]	C	T	1.622e^-4	0.754	UPSTREAM CG42557 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25761645	3R_25761645_SNP [dm3] 3R_29935923_SNP [dm6]	A	T	1.623e^-4	0.754	UPSTREAM CG15523 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	6694604	3L_6694604_SNP [dm3] 3L_6701504_SNP [dm6]	A	G	1.626e^-4	0.754	INTRON SP1173
2R	18556539	2R_18556539_SNP [dm3] 2R_22669034_SNP [dm6]	A	G	1.628e^-4	0.754	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6690112	3L_6690112_SNP [dm3] 3L_6697012_SNP [dm6]	A	G	1.636e^-4	0.754	INTRON SP1173
2R	12329384	2R_12329384_SNP [dm3] 2R_16441879_SNP [dm6]	A	T	1.636e^-4	0.754	INTERGENIC
X	4613175	X_4613175_SNP [dm3] X_4719142_SNP [dm6]	A	T	1.637e^-4	0.754	INTRON Proc-R
3R	25247170	3R_25247170_SNP [dm3] 3R_29421448_SNP [dm6]	T	C	1.637e^-4	0.754	INTRON Ptp99A
3R	24272270	3R_24272270_SNP [dm3] 3R_28446548_SNP [dm6]	A	C	1.642e^-4	0.754	INTRON beat-VI
3R	22089157	3R_22089157_SNP [dm3] 3R_26263435_SNP [dm6]	G	A	1.653e^-4	0.754	INTRON CG6154
2R	13994010	2R_13994010_SNP [dm3] 2R_18106505_SNP [dm6]	A	G	1.662e^-4	0.754	INTRON CG5756
2L	10457110	2L_10457110_SNP [dm3] 2L_10457110_SNP [dm6]	G	A	1.671e^-4	0.754	UPSTREAM CG5322 & 1 other INTRON CG5322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6694325	3L_6694325_SNP [dm3] 3L_6701225_SNP [dm6]	T	C	1.673e^-4	0.754	INTRON SP1173
2L	4149919	2L_4149919_SNP [dm3] 2L_4149919_SNP [dm6]	G	T	1.677e^-4	0.754	NON_SYNONYMOUS_CODING CG2955
3L	19356580	3L_19356580_SNP [dm3] 3L_19363480_SNP [dm6]	C	G	1.678e^-4	0.754	INTRON CG32206
3R	4067551	3R_4067551_SNP [dm3] 3R_8241829_SNP [dm6]	G	A	1.680e^-4	0.754	UTR_3_PRIME CG9636
3L	6947492	3L_6947492_SNP [dm3] 3L_6954392_SNP [dm6]	A	T	1.684e^-4	0.754	SYNONYMOUS_CODING CG10077	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13654220	3R_13654220_SNP [dm3] 3R_17828498_SNP [dm6]	A	T	1.685e^-4	0.754	INTRON tinc	TF binding site mE1_TFBS_cad
2L	5965533	2L_5965533_SNP [dm3] 2L_5965533_SNP [dm6]	G	A	1.685e^-4	0.754	SYNONYMOUS_CODING CG13992 UPSTREAM psd
3L	10419837	3L_10419837_SNP [dm3] 3L_10426737_SNP [dm6]	C	G	1.692e^-4	0.754	INTERGENIC
3R	26380167	3R_26380167_DEL [dm3] 3R_30554445_DEL [dm6]	CTCGTCATCACTAGGAATAA...	C	1.694e^-4	0.754	DOWNSTREAM CG34155 INTRON tmod
3R	10109833	3R_10109833_SNP [dm3] 3R_14284111_SNP [dm6]	A	G	1.695e^-4	0.754	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16347734	3R_16347734_SNP [dm3] 3R_20522012_SNP [dm6]	G	T	1.697e^-4	0.754	INTERGENIC
3L	19131708	3L_19131708_DEL [dm3] 3L_19138608_DEL [dm6]	AGCCGCTGTATTCAGTGTTC...	A	1.698e^-4	0.754	INTRON CG14082
3L	6365145	3L_6365145_SNP [dm3] 3L_6372045_SNP [dm6]	G	T	1.700e^-4	0.754	INTERGENIC
2L	17421605	2L_17421605_SNP [dm3] 2L_17421605_SNP [dm6]	A	G	1.702e^-4	0.754	INTRON Dif
2L	15255034	2L_15255034_SNP [dm3] 2L_15255034_SNP [dm6]	C	T	1.704e^-4	0.754	SYNONYMOUS_CODING Pol32 DOWNSTREAM dao	TF binding site mE1_TFBS_HSA
3L	3499962	3L_3499962_SNP [dm3] 3L_3499962_SNP [dm6]	C	T	1.705e^-4	0.754	INTRON CG42324
3L	15007412	3L_15007412_SNP [dm3] 3L_15014312_SNP [dm6]	T	G	1.718e^-4	0.758	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10288570	3R_10288570_INS [dm3] 3R_14462848_INS [dm6]	A	AA	1.725e^-4	0.758	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9028108	2L_9028108_SNP [dm3] 2L_9028108_SNP [dm6]	G	T	1.728e^-4	0.758	INTRON CG9582 & 1 other
2R	18063770	2R_18063770_SNP [dm3] 2R_22176265_SNP [dm6]	C	T	1.732e^-4	0.758	SYNONYMOUS_CODING CG6758 EXON CR45151	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	25767374	3R_25767374_SNP [dm3] 3R_29941652_SNP [dm6]	A	T	1.737e^-4	0.758	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5653998	3L_5653998_SNP [dm3] 3L_5660898_SNP [dm6]	A	G	1.738e^-4	0.758	SYNONYMOUS_CODING Sse INTRON sif
3L	5439804	3L_5439804_SNP [dm3] 3L_5446704_SNP [dm6]	G	A	1.749e^-4	0.758	INTERGENIC
3R	12370358	3R_12370358_SNP [dm3] 3R_16544636_SNP [dm6]	T	A	1.764e^-4	0.758	INTRON CG42342	TF binding site BDTNP1_TFBS_da
2R	18557342	2R_18557342_SNP [dm3] 2R_22669837_SNP [dm6]	C	A	1.765e^-4	0.758	NON_SYNONYMOUS_CODING CG13516 UPSTREAM RYBP DOWNSTREAM CG30269	TF binding site mE1_TFBS_chinmo
3R	22081566	3R_22081566_SNP [dm3] 3R_26255844_SNP [dm6]	C	A	1.766e^-4	0.758	DOWNSTREAM Ald INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
2R	12850910	2R_12850910_SNP [dm3] 2R_16963405_SNP [dm6]	C	T	1.770e^-4	0.758	UPSTREAM CR44376 INTERGENIC
3R	15644548	3R_15644548_SNP [dm3] 3R_19818826_SNP [dm6]	G	A	1.773e^-4	0.758	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25758563	3R_25758563_SNP [dm3] 3R_29932841_SNP [dm6]	C	A	1.773e^-4	0.758	UPSTREAM CG42557 & 1 other INTRON Cog7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22085346	3R_22085346_SNP [dm3] 3R_26259624_SNP [dm6]	T	C	1.776e^-4	0.758	UPSTREAM Ald INTRON Ald	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	23934645	3L_23934645_SNP [dm3] 3L_23941545_SNP [dm6]	A	C	1.776e^-4	0.758	INTRON CG40470
2R	17094139	2R_17094139_INS [dm3] 2R_21206634_INS [dm6]	T	TGAG	1.783e^-4	0.758	INTRON CG44245 & 1 other
3R	15872677	3R_15872677_SNP [dm3] 3R_20046955_SNP [dm6]	A	C	1.786e^-4	0.758	SYNONYMOUS_CODING CG33934 UTR_3_PRIME Indy-2 INTRON CG17193
3R	5965794	3R_5965794_SNP [dm3] 3R_10140072_SNP [dm6]	T	C	1.796e^-4	0.758	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	22079057	3R_22079057_SNP [dm3] 3R_26253335_SNP [dm6]	T	G	1.801e^-4	0.758	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13215052	2R_13215052_SNP [dm3] 2R_17327547_SNP [dm6]	C	T	1.803e^-4	0.758	INTRON mbl
3R	19283364	3R_19283364_SNP [dm3] 3R_23457642_SNP [dm6]	G	C	1.809e^-4	0.758	INTRON CG4374	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3716475	X_3716475_SNP [dm3] X_3822442_SNP [dm6]	G	C	1.810e^-4	0.758	INTRON ec	TF binding site mE1_TFBS_HSA
3R	22097024	3R_22097024_INS [dm3] 3R_26271302_INS [dm6]	T	TTAATCAT	1.816e^-4	0.758	INTRON CG6154
3R	20517523	3R_20517523_SNP [dm3] 3R_24691801_SNP [dm6]	A	G	1.817e^-4	0.758	SYNONYMOUS_CODING slo
3R	25497760	3R_25497760_SNP [dm3] 3R_29672038_SNP [dm6]	A	G	1.826e^-4	0.758	SYNONYMOUS_CODING Obp99a UPSTREAM ppk19 DOWNSTREAM ppk30	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	4683959	2L_4683959_SNP [dm3] 2L_4683959_SNP [dm6]	G	A	1.827e^-4	0.758	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17037911	2L_17037911_SNP [dm3] 2L_17037911_SNP [dm6]	G	A	1.828e^-4	0.758	INTERGENIC
3L	12852127	3L_12852127_SNP [dm3] 3L_12859027_SNP [dm6]	C	T	1.832e^-4	0.758	SYNONYMOUS_CODING CG32107
3R	23889950	3R_23889950_SNP [dm3] 3R_28064228_SNP [dm6]	C	A	1.832e^-4	0.758	INTRON CG34362
X	16954282	X_16954282_SNP [dm3] X_17060249_SNP [dm6]	C	T	1.836e^-4	0.758	INTRON CG45002
2R	15274301	2R_15274301_SNP [dm3] 2R_19386796_SNP [dm6]	G	A	1.839e^-4	0.758	INTRON CG10081
3L	18293062	3L_18293062_SNP [dm3] 3L_18299962_SNP [dm6]	T	C	1.845e^-4	0.758	SPLICE_SITE_REGION CG13700 INTRON CG13700
3R	18409090	3R_18409090_SNP [dm3] 3R_22583368_SNP [dm6]	G	T	1.847e^-4	0.758	UTR_3_PRIME CG33107 UPSTREAM Dph5	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22075244	3R_22075244_SNP [dm3] 3R_26249522_SNP [dm6]	A	C	1.852e^-4	0.758	INTRON CR42745	TF binding site mE1_TFBS_bab1
3R	16032906	3R_16032906_SNP [dm3] 3R_20207184_SNP [dm6]	G	A	1.854e^-4	0.758	INTRON Nlg4
3L	15218588	3L_15218588_SNP [dm3] 3L_15225488_SNP [dm6]	G	C	1.861e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12950902	3R_12950902_SNP [dm3] 3R_17125180_SNP [dm6]	T	G	1.867e^-4	0.758	DOWNSTREAM CG45079 & 1 other INTRON cher
3R	22506449	3R_22506449_INS [dm3] 3R_26680727_INS [dm6]	C	CG	1.874e^-4	0.758	INTRON beat-VII
2R	16404150	2R_16404150_SNP [dm3] 2R_20516645_SNP [dm6]	G	A	1.876e^-4	0.758	INTERGENIC
3R	27135746	3R_27135746_SNP [dm3] 3R_31310024_SNP [dm6]	G	C	1.878e^-4	0.758	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9191436	2L_9191436_SNP [dm3] 2L_9191436_SNP [dm6]	T	C	1.880e^-4	0.758	INTRON tai
X	8750839	X_8750839_SNP [dm3] X_8856806_SNP [dm6]	A	C	1.882e^-4	0.758	INTRON CG12075
2R	16471471	2R_16471471_SNP [dm3] 2R_20583966_SNP [dm6]	C	A	1.890e^-4	0.758	UPSTREAM qsm & 2 others DOWNSTREAM mir-312 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17936763	3R_17936763_SNP [dm3] 3R_22111041_SNP [dm6]	C	T	1.891e^-4	0.758	UPSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10109040	3R_10109040_SNP [dm3] 3R_14283318_SNP [dm6]	C	T	1.902e^-4	0.759	INTRON trx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
3R	18001680	3R_18001680_SNP [dm3] 3R_22175958_SNP [dm6]	C	G	1.908e^-4	0.759	INTRON SKIP
2R	17094276	2R_17094276_SNP [dm3] 2R_21206771_SNP [dm6]	G	C	1.908e^-4	0.759	INTRON CG44245 & 1 other
2R	13917987	2R_13917987_SNP [dm3] 2R_18030482_SNP [dm6]	A	T	1.918e^-4	0.759	INTERGENIC
3R	7515888	3R_7515888_SNP [dm3] 3R_11690166_SNP [dm6]	A	G	1.921e^-4	0.759	UPSTREAM CG6908 DOWNSTREAM CG18765 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	1543958	2L_1543958_SNP [dm3] 2L_1543958_SNP [dm6]	T	C	1.922e^-4	0.759	INTERGENIC
X	6154588	X_6154588_DEL [dm3] X_6260555_DEL [dm6]	AA	A	1.923e^-4	0.759	UPSTREAM CG3781 INTRON schlank	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
X	14607530	X_14607530_SNP [dm3] X_14713497_SNP [dm6]	A	C	1.940e^-4	0.761	INTRON NetB
2L	18659702	2L_18659702_SNP [dm3] 2L_18659702_SNP [dm6]	T	C	1.944e^-4	0.761	INTRON MESR3	TF binding site mE1_TFBS_chinmo
2R	17619666	2R_17619666_SNP [dm3] 2R_21732161_SNP [dm6]	C	T	1.948e^-4	0.761	INTERGENIC
2L	4144530	2L_4144530_SNP [dm3] 2L_4144530_SNP [dm6]	G	A	1.954e^-4	0.761	INTERGENIC
3R	25767077	3R_25767077_SNP [dm3] 3R_29941355_SNP [dm6]	G	A	1.954e^-4	0.761	NON_SYNONYMOUS_CODING CG15523
2L	5328762	2L_5328762_SNP [dm3] 2L_5328762_SNP [dm6]	T	G	1.966e^-4	0.761	UTR_5_PRIME CG14022 DOWNSTREAM cype
2L	14338772	2L_14338772_SNP [dm3] 2L_14338772_SNP [dm6]	A	T	1.975e^-4	0.761	SYNONYMOUS_CODING CG15286 INTRON CG33090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17321242	3R_17321242_SNP [dm3] 3R_21495520_SNP [dm6]	T	C	1.980e^-4	0.761	INTERGENIC
3R	21628141	3R_21628141_SNP [dm3] 3R_25802419_SNP [dm6]	A	G	1.986e^-4	0.761	INTERGENIC
3L	20923237	3L_20923237_SNP [dm3] 3L_20930137_SNP [dm6]	A	G	1.989e^-4	0.761	DOWNSTREAM CG10589 INTRON fng
2L	17249506	2L_17249506_SNP [dm3] 2L_17249506_SNP [dm6]	C	T	1.991e^-4	0.761	INTRON beat-IIIc
3R	16343417	3R_16343417_SNP [dm3] 3R_20517695_SNP [dm6]	G	A	1.996e^-4	0.761	INTERGENIC
3R	26375924	3R_26375924_SNP [dm3] 3R_30550202_SNP [dm6]	G	A	2.003e^-4	0.761	INTRON tmod
3L	5653854	3L_5653854_SNP [dm3] 3L_5660754_SNP [dm6]	C	T	2.007e^-4	0.761	SYNONYMOUS_CODING Sse INTRON sif
3R	22088322	3R_22088322_SNP [dm3] 3R_26262600_SNP [dm6]	C	G	2.007e^-4	0.761	UPSTREAM CG6154 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	17824206	3L_17824206_SNP [dm3] 3L_17831106_SNP [dm6]	T	A	2.009e^-4	0.761	INTRON Grd
3R	25761027	3R_25761027_SNP [dm3] 3R_29935305_SNP [dm6]	T	G	2.015e^-4	0.761	UPSTREAM CG15523 DOWNSTREAM CG42557 & 1 other INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
X	4273741	X_4273741_SNP [dm3] X_4379708_SNP [dm6]	A	T	2.021e^-4	0.761	INTERGENIC
2L	19686695	2L_19686695_SNP [dm3] 2L_19686695_SNP [dm6]	C	T	2.027e^-4	0.761	INTRON Lar
2L	9906540	2L_9906540_SNP [dm3] 2L_9906540_SNP [dm6]	C	G	2.028e^-4	0.761	INTRON CG13124	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	11357383	3L_11357383_SNP [dm3] 3L_11364283_SNP [dm6]	G	T	2.034e^-4	0.761	UPSTREAM CR45036 INTRON CG6163	TF binding site mE1_TFBS_cad
3R	16758580	3R_16758580_DEL [dm3] 3R_20932858_DEL [dm6]	AAATGCGG	A	2.040e^-4	0.761	INTRON CG31191
3R	16758561	3R_16758561_SNP [dm3] 3R_20932839_SNP [dm6]	T	C	2.043e^-4	0.761	INTRON CG31191
3L	10760005	3L_10760005_SNP [dm3] 3L_10766905_SNP [dm6]	C	T	2.047e^-4	0.761	INTERGENIC
3L	12449267	3L_12449267_DEL [dm3] 3L_12456167_DEL [dm6]	ACAAAA	A	2.049e^-4	0.761	INTERGENIC
3L	10376138	3L_10376138_SNP [dm3] 3L_10383038_SNP [dm6]	A	G	2.063e^-4	0.761	INTERGENIC
2L	2633965	2L_2633965_MNP [dm3] 2L_2633965_MNP [dm6]	CGT	GTC	2.088e^-4	0.761	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25763023	3R_25763023_SNP [dm3] 3R_29937301_SNP [dm6]	G	A	2.091e^-4	0.761	SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	16145662	2R_16145662_SNP [dm3] 2R_20258157_SNP [dm6]	G	A	2.095e^-4	0.761	UTR_5_PRIME Hsl UPSTREAM Ate1 INTRON Hsl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2R	18556536	2R_18556536_SNP [dm3] 2R_22669031_SNP [dm6]	A	G	2.096e^-4	0.761	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	14208107	3L_14208107_SNP [dm3] 3L_14215007_SNP [dm6]	C	T	2.097e^-4	0.761	INTRON nuf	TF binding site mE1_TFBS_inv
2L	7029812	2L_7029812_SNP [dm3] 2L_7029812_SNP [dm6]	T	A	2.108e^-4	0.761	DOWNSTREAM CG3476 & 1 other INTERGENIC
3R	9157446	3R_9157446_SNP [dm3] 3R_13331724_SNP [dm6]	C	T	2.112e^-4	0.761	INTRON PK2-R2
2R	6334946	2R_6334946_SNP [dm3] 2R_10447441_SNP [dm6]	G	A	2.114e^-4	0.761	INTRON Galphao
2R	14496876	2R_14496876_SNP [dm3] 2R_18609371_SNP [dm6]	C	A	2.116e^-4	0.761	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2146928	X_2146928_SNP [dm3] X_2252895_SNP [dm6]	G	A	2.119e^-4	0.761	UPSTREAM CG3191 INTRON CG3091	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	861498	2L_861498_SNP [dm3] 2L_861498_SNP [dm6]	T	G	2.121e^-4	0.761	SYNONYMOUS_CODING CG13950 DOWNSTREAM aru	TF binding site mE1_TFBS_chinmo
3R	11286387	3R_11286387_SNP [dm3] 3R_15460665_SNP [dm6]	T	C	2.124e^-4	0.761	INTRON AdamTS-A
2R	7692255	2R_7692255_SNP [dm3] 2R_11804750_SNP [dm6]	G	T	2.128e^-4	0.761	INTRON ths
3R	24958518	3R_24958518_SNP [dm3] 3R_29132796_SNP [dm6]	C	A	2.130e^-4	0.761	INTRON Vha100-1
2L	6277487	2L_6277487_SNP [dm3] 2L_6277487_SNP [dm6]	C	G	2.138e^-4	0.761	INTRON Ddr
3L	20368836	3L_20368836_SNP [dm3] 3L_20375736_SNP [dm6]	T	C	2.139e^-4	0.761	START_GAINED Ide UTR_5_PRIME Ide UPSTREAM RhoBTB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11133757	3L_11133757_SNP [dm3] 3L_11140657_SNP [dm6]	G	T	2.142e^-4	0.761	INTRON CG32082
2R	4301371	2R_4301371_SNP [dm3] 2R_8413866_SNP [dm6]	C	T	2.149e^-4	0.761	INTERGENIC
3L	16872227	3L_16872227_SNP [dm3] 3L_16879127_SNP [dm6]	C	T	2.155e^-4	0.761	UTR_3_PRIME CG32170 INTRON Lmpt
3R	21534929	3R_21534929_SNP [dm3] 3R_25709207_SNP [dm6]	C	A	2.156e^-4	0.761	INTRON LpR2
3R	5081569	3R_5081569_SNP [dm3] 3R_9255847_SNP [dm6]	C	G	2.161e^-4	0.761	DOWNSTREAM CG16736 INTRON CG16734	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	5081578	3R_5081578_SNP [dm3] 3R_9255856_SNP [dm6]	T	C	2.161e^-4	0.761	SPLICE_SITE_REGION CG16734 DOWNSTREAM CG16736 INTRON CG16734	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3R	5081584	3R_5081584_SNP [dm3] 3R_9255862_SNP [dm6]	C	T	2.161e^-4	0.761	SPLICE_SITE_REGION CG16734 SYNONYMOUS_CODING CG16734 DOWNSTREAM CG16736	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
X	11269949	X_11269949_SNP [dm3] X_11375916_SNP [dm6]	T	C	2.169e^-4	0.761	SYNONYMOUS_CODING dlg1 INTRON dlg1
3L	8225458	3L_8225458_SNP [dm3] 3L_8232358_SNP [dm6]	A	T	2.169e^-4	0.761	DOWNSTREAM CR43953 INTRON CG7213
2L	7177949	2L_7177949_SNP [dm3] 2L_7177949_SNP [dm6]	G	A	2.177e^-4	0.761	EXON CR44613
X	14410261	X_14410261_INS [dm3] X_14516228_INS [dm6]	T	AG	2.178e^-4	0.761	INTERGENIC
3R	16758555	3R_16758555_SNP [dm3] 3R_20932833_SNP [dm6]	T	C	2.178e^-4	0.761	INTRON CG31191
3L	12296586	3L_12296586_SNP [dm3] 3L_12303486_SNP [dm6]	C	G	2.183e^-4	0.761	UPSTREAM CR44551 INTERGENIC
3L	11356343	3L_11356343_INS [dm3] 3L_11363243_INS [dm6]	A	AATATCTTT	2.187e^-4	0.761	INTRON CG6163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9918462	3R_9918462_DEL [dm3] 3R_14092740_DEL [dm6]	GACCCTG	G	2.190e^-4	0.761	CODON_DELETION CCHa1 DOWNSTREAM Npc2b
3L	1362124	3L_1362124_SNP [dm3] 3L_1362124_SNP [dm6]	A	G	2.195e^-4	0.761	INTRON Ptp61F
3R	23770458	3R_23770458_INS [dm3] 3R_27944736_INS [dm6]	A	ACAGA	2.201e^-4	0.761	INTRON mfrn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12684788	3L_12684788_SNP [dm3] 3L_12691688_SNP [dm6]	T	A	2.205e^-4	0.761	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9105457	3L_9105457_INS [dm3] 3L_9112357_INS [dm6]	T	TGGT	2.205e^-4	0.761	CODON_INSERTION bol INTRON bol
2R	14496862	2R_14496862_SNP [dm3] 2R_18609357_SNP [dm6]	C	T	2.206e^-4	0.761	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22096818	3R_22096818_DEL [dm3] 3R_26271096_DEL [dm6]	AT	A	2.208e^-4	0.761	INTRON CG6154
3R	22096989	3R_22096989_SNP [dm3] 3R_26271267_SNP [dm6]	A	T	2.208e^-4	0.761	INTRON CG6154
3R	22097130	3R_22097130_SNP [dm3] 3R_26271408_SNP [dm6]	C	T	2.208e^-4	0.761	INTRON CG6154
2R	13961115	2R_13961115_SNP [dm3] 2R_18073610_SNP [dm6]	C	T	2.208e^-4	0.761	UPSTREAM CR45022 INTRON CG34386
2R	4626227	2R_4626227_SNP [dm3] 2R_8738722_SNP [dm6]	T	A	2.211e^-4	0.761	DOWNSTREAM CG42615 INTRON CG8740
3L	17824182	3L_17824182_SNP [dm3] 3L_17831082_SNP [dm6]	A	G	2.213e^-4	0.761	INTRON Grd
2R	17891976	2R_17891976_SNP [dm3] 2R_22004471_SNP [dm6]	A	G	2.213e^-4	0.761	INTRON CG34370
3L	16053454	3L_16053454_SNP [dm3] 3L_16060354_SNP [dm6]	G	A	2.218e^-4	0.761	INTRON Mbs
X	2902618	X_2902618_SNP [dm3] X_3008585_SNP [dm6]	A	T	2.219e^-4	0.761	INTRON kirre	TF binding site mE1_TFBS_inv
3R	17978098	3R_17978098_SNP [dm3] 3R_22152376_SNP [dm6]	G	T	2.224e^-4	0.761	INTRON SKIP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	14917139	X_14917139_SNP [dm3] X_15023106_SNP [dm6]	A	T	2.224e^-4	0.761	INTRON hiw
2R	12329400	2R_12329400_SNP [dm3] 2R_16441895_SNP [dm6]	C	G	2.237e^-4	0.763	INTERGENIC
3R	25010184	3R_25010184_SNP [dm3] 3R_29184462_SNP [dm6]	T	C	2.239e^-4	0.763	INTRON CG14509
X	14607538	X_14607538_SNP [dm3] X_14713505_SNP [dm6]	A	G	2.243e^-4	0.763	INTRON NetB
3R	9756435	3R_9756435_SNP [dm3] 3R_13930713_SNP [dm6]	C	T	2.251e^-4	0.765	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	8820505	3L_8820505_SNP [dm3] 3L_8827405_SNP [dm6]	A	G	2.256e^-4	0.765	UPSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	16124334	2R_16124334_SNP [dm3] 2R_20236829_SNP [dm6]	G	T	2.261e^-4	0.765	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
2R	18095520	2R_18095520_SNP [dm3] 2R_22208015_SNP [dm6]	A	G	2.273e^-4	0.768	UPSTREAM CG3290 DOWNSTREAM CG3264 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5954496	2L_5954496_SNP [dm3] 2L_5954496_SNP [dm6]	T	A	2.286e^-4	0.771	DOWNSTREAM CG13999 INTRON CG9044	TF binding site mE1_TFBS_inv
3L	14703825	3L_14703825_SNP [dm3] 3L_14710725_SNP [dm6]	A	T	2.295e^-4	0.772	INTRON ome
3L	2143436	3L_2143436_SNP [dm3] 3L_2143436_SNP [dm6]	A	C	2.300e^-4	0.772	INTRON zormin
3R	4892706	3R_4892706_SNP [dm3] 3R_9066984_SNP [dm6]	A	G	2.304e^-4	0.772	UTR_3_PRIME pum DOWNSTREAM Ada & 1 other
2R	4626189	2R_4626189_SNP [dm3] 2R_8738684_SNP [dm6]	G	A	2.309e^-4	0.772	DOWNSTREAM CG42615 INTRON CG8740
3R	20505837	3R_20505837_SNP [dm3] 3R_24680115_SNP [dm6]	A	G	2.310e^-4	0.772	INTRON slo
3R	17761539	3R_17761539_SNP [dm3] 3R_21935817_SNP [dm6]	A	T	2.319e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9157593	3R_9157593_SNP [dm3] 3R_13331871_SNP [dm6]	C	G	2.331e^-4	0.774	INTRON PK2-R2
3R	5969251	3R_5969251_SNP [dm3] 3R_10143529_SNP [dm6]	C	G	2.338e^-4	0.774	NON_SYNONYMOUS_CODING TAF1B UTR_5_PRIME TAF1B DOWNSTREAM CG42759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_sens
2R	17256595	2R_17256595_SNP [dm3] 2R_21369090_SNP [dm6]	C	T	2.368e^-4	0.774	INTRON cv-2	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12402152	3L_12402152_SNP [dm3] 3L_12409052_SNP [dm6]	A	G	2.369e^-4	0.774	UPSTREAM CG32103 INTRON CG32103	TF binding site mE1_TFBS_cad
2R	6568950	2R_6568950_SNP [dm3] 2R_10681445_SNP [dm6]	A	C	2.369e^-4	0.774	INTRON stan	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	14607533	X_14607533_INS [dm3] X_14713500_INS [dm6]	C	CTC	2.377e^-4	0.774	INTRON NetB
2L	13641342	2L_13641342_SNP [dm3] 2L_13641342_SNP [dm6]	C	A	2.385e^-4	0.774	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21533147	3R_21533147_SNP [dm3] 3R_25707425_SNP [dm6]	G	T	2.387e^-4	0.774	SYNONYMOUS_CODING LpR2 INTRON LpR2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6101494	3L_6101494_SNP [dm3] 3L_6108394_SNP [dm6]	G	C	2.387e^-4	0.774	INTRON Ets65A	TF binding site mE1_TFBS_cad
2L	18386687	2L_18386687_SNP [dm3] 2L_18386687_SNP [dm6]	T	C	2.388e^-4	0.774	UTR_3_PRIME Fas3 INTRON Fas3
3L	3500961	3L_3500961_INS [dm3] 3L_3500961_INS [dm6]	T	TTA	2.390e^-4	0.774	INTRON CG42324
3L	10387287	3L_10387287_SNP [dm3] 3L_10394187_SNP [dm6]	C	T	2.404e^-4	0.774	INTERGENIC
3R	15713715	3R_15713715_SNP [dm3] 3R_19887993_SNP [dm6]	C	T	2.404e^-4	0.774	INTRON ninaE	TF binding site mE1_TFBS_cad
3L	10387205	3L_10387205_SNP [dm3] 3L_10394105_SNP [dm6]	G	T	2.405e^-4	0.774	INTERGENIC
3R	10111257	3R_10111257_SNP [dm3] 3R_14285535_SNP [dm6]	A	C	2.410e^-4	0.774	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	14254066	3R_14254066_SNP [dm3] 3R_18428344_SNP [dm6]	G	T	2.411e^-4	0.774	UTR_3_PRIME fru INTRON fru
3R	22505574	3R_22505574_SNP [dm3] 3R_26679852_SNP [dm6]	T	C	2.415e^-4	0.774	INTRON beat-VII
3R	22088394	3R_22088394_SNP [dm3] 3R_26262672_SNP [dm6]	G	C	2.429e^-4	0.774	UTR_5_PRIME CG6154	TF binding site mE1_TFBS_Trl
3L	3502646	3L_3502646_SNP [dm3] 3L_3502646_SNP [dm6]	G	A	2.432e^-4	0.774	INTRON CG42324
3R	17257640	3R_17257640_SNP [dm3] 3R_21431918_SNP [dm6]	T	C	2.433e^-4	0.774	INTRON lbl
X	13795275	X_13795275_SNP [dm3] X_13901242_SNP [dm6]	T	G	2.435e^-4	0.774	INTRON mamo
2R	12850849	2R_12850849_SNP [dm3] 2R_16963344_SNP [dm6]	A	T	2.437e^-4	0.774	UPSTREAM CR44376 INTERGENIC
2R	11853944	2R_11853944_SNP [dm3] 2R_15966439_SNP [dm6]	G	A	2.438e^-4	0.774	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17804896	2R_17804896_SNP [dm3] 2R_21917391_SNP [dm6]	T	C	2.438e^-4	0.774	INTRON Fili
2R	17426248	2R_17426248_SNP [dm3] 2R_21538743_SNP [dm6]	G	A	2.439e^-4	0.774	NON_SYNONYMOUS_CODING CG33226 UPSTREAM CG30287 DOWNSTREAM CG30283 INTRON Egfr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24383132	3R_24383132_DEL [dm3] 3R_28557410_DEL [dm6]	TT	T	2.439e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3811931	2L_3811931_SNP [dm3] 2L_3811931_SNP [dm6]	G	T	2.443e^-4	0.774	NON_SYNONYMOUS_CODING CG3407	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	26021598	3R_26021598_SNP [dm3] 3R_30195876_SNP [dm6]	C	T	2.448e^-4	0.774	SYNONYMOUS_CODING CG15531 DOWNSTREAM CG9743
3R	18696319	3R_18696319_SNP [dm3] 3R_22870597_SNP [dm6]	C	G	2.449e^-4	0.774	INTERGENIC
3L	20542729	3L_20542729_SNP [dm3] 3L_20549629_SNP [dm6]	A	G	2.451e^-4	0.774	INTERGENIC
3R	23965079	3R_23965079_SNP [dm3] 3R_28139357_SNP [dm6]	A	C	2.452e^-4	0.774	INTERGENIC
3L	6375532	3L_6375532_SNP [dm3] 3L_6382432_SNP [dm6]	G	A	2.454e^-4	0.774	INTERGENIC
2R	11848708	2R_11848708_SNP [dm3] 2R_15961203_SNP [dm6]	G	A	2.458e^-4	0.774	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18001715	3R_18001715_SNP [dm3] 3R_22175993_SNP [dm6]	T	C	2.462e^-4	0.774	INTRON SKIP
3R	21581312	3R_21581312_SNP [dm3] 3R_25755590_SNP [dm6]	G	C	2.468e^-4	0.774	INTRON LpR1
2R	11450148	2R_11450148_SNP [dm3] 2R_15562643_SNP [dm6]	A	C	2.477e^-4	0.774	DOWNSTREAM CG8195 & 1 other INTERGENIC
3L	5280165	3L_5280165_DEL [dm3] 3L_5287065_DEL [dm6]	CC	C	2.482e^-4	0.774	INTERGENIC
3L	13016828	3L_13016828_SNP [dm3] 3L_13023728_SNP [dm6]	C	T	2.493e^-4	0.774	SPLICE_SITE_REGION RpS12 UPSTREAM snoRNA:Me28S-A774a DOWNSTREAM snoRNA:Me28S-A774b INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	13636840	3R_13636840_SNP [dm3] 3R_17811118_SNP [dm6]	T	C	2.495e^-4	0.774	UTR_5_PRIME CG18012 UPSTREAM tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv
X	8095299	X_8095299_SNP [dm3] X_8201266_SNP [dm6]	A	C	2.497e^-4	0.774	INTRON sdt
3R	10109512	3R_10109512_SNP [dm3] 3R_14283790_SNP [dm6]	G	T	2.501e^-4	0.774	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	13767632	3R_13767632_SNP [dm3] 3R_17941910_SNP [dm6]	G	A	2.502e^-4	0.774	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26595264	3R_26595264_SNP [dm3] 3R_30769542_SNP [dm6]	A	C	2.502e^-4	0.774	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17824197	3L_17824197_SNP [dm3] 3L_17831097_SNP [dm6]	G	C	2.506e^-4	0.774	INTRON Grd
2R	18863814	2R_18863814_SNP [dm3] 2R_22976291_SNP [dm6]	A	G	2.508e^-4	0.774	INTERGENIC
2R	17070153	2R_17070153_SNP [dm3] 2R_21182648_SNP [dm6]	T	C	2.522e^-4	0.774	UPSTREAM tRNA:G3:57BCb & 1 other DOWNSTREAM tRNA:CR30209 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8704556	2L_8704556_SNP [dm3] 2L_8704556_SNP [dm6]	G	T	2.524e^-4	0.774	INTRON Hnf4 EXON CR44992
2R	17173093	2R_17173093_SNP [dm3] 2R_21285588_SNP [dm6]	C	G	2.524e^-4	0.774	UTR_3_PRIME MFS16 & 1 other
3R	17771483	3R_17771483_SNP [dm3] 3R_21945761_SNP [dm6]	A	C	2.540e^-4	0.774	INTERGENIC
3R	25767369	3R_25767369_SNP [dm3] 3R_29941647_SNP [dm6]	T	A	2.545e^-4	0.774	NON_SYNONYMOUS_CODING CG15523	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5653959	3L_5653959_SNP [dm3] 3L_5660859_SNP [dm6]	T	C	2.548e^-4	0.774	SYNONYMOUS_CODING Sse INTRON sif
3R	24958688	3R_24958688_SNP [dm3] 3R_29132966_SNP [dm6]	G	A	2.560e^-4	0.774	INTRON Vha100-1
3R	4905320	3R_4905320_SNP [dm3] 3R_9079598_SNP [dm6]	T	A	2.561e^-4	0.774	INTRON pum
X	16953988	X_16953988_SNP [dm3] X_17059955_SNP [dm6]	C	A	2.563e^-4	0.774	INTRON CG45002
3R	19203789	3R_19203789_SNP [dm3] 3R_23378067_SNP [dm6]	A	G	2.570e^-4	0.774	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
3R	25766945	3R_25766945_SNP [dm3] 3R_29941223_SNP [dm6]	T	C	2.576e^-4	0.774	NON_SYNONYMOUS_CODING CG15523
3L	11732689	3L_11732689_DEL [dm3] 3L_11739589_DEL [dm6]	CC	C	2.584e^-4	0.774	INTRON CG6024
3R	18083614	3R_18083614_SNP [dm3] 3R_22257892_SNP [dm6]	C	A	2.593e^-4	0.774	INTRON SKIP
3L	7501907	3L_7501907_SNP [dm3] 3L_7508807_SNP [dm6]	A	T	2.596e^-4	0.774	INTERGENIC
2L	4107971	2L_4107971_SNP [dm3] 2L_4107971_SNP [dm6]	T	A	2.596e^-4	0.774	INTRON ed
3R	936092	3R_936092_SNP [dm3] 3R_5110370_SNP [dm6]	G	A	2.597e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25744615	3R_25744615_SNP [dm3] 3R_29918893_SNP [dm6]	G	A	2.598e^-4	0.774	NON_SYNONYMOUS_CODING trp	TF binding site mE1_TFBS_chinmo
X	12480830	X_12480830_SNP [dm3] X_12586797_SNP [dm6]	C	A	2.599e^-4	0.774	SYNONYMOUS_CODING LIMK1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10387221	3L_10387221_SNP [dm3] 3L_10394121_SNP [dm6]	A	T	2.600e^-4	0.774	INTERGENIC
3R	17562984	3R_17562984_SNP [dm3] 3R_21737262_SNP [dm6]	T	A	2.609e^-4	0.774	NON_SYNONYMOUS_CODING CG42870 UPSTREAM Sfp93F & 1 other
2R	18241673	2R_18241673_SNP [dm3] 2R_22354168_SNP [dm6]	G	T	2.612e^-4	0.774	INTRON Liprin-gamma
2L	3937643	2L_3937643_INS [dm3] 2L_3937643_INS [dm6]	G	GT	2.619e^-4	0.774	INTRON fred
X	5512464	X_5512464_SNP [dm3] X_5618431_SNP [dm6]	C	T	2.626e^-4	0.774	SYNONYMOUS_CODING RhoGAP5A DOWNSTREAM Mlc-c	TF binding site mE1_TFBS_chinmo
2L	5903195	2L_5903195_SNP [dm3] 2L_5903195_SNP [dm6]	G	A	2.627e^-4	0.774	UTR_3_PRIME CG9021 DOWNSTREAM CG9021	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2900009	X_2900009_SNP [dm3] X_3005976_SNP [dm6]	T	C	2.633e^-4	0.774	INTRON kirre
3R	18881992	3R_18881992_SNP [dm3] 3R_23056270_SNP [dm6]	G	A	2.635e^-4	0.774	START_GAINED CG17119 UTR_5_PRIME CG17119	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10594092	X_10594092_SNP [dm3] X_10700059_SNP [dm6]	C	A	2.636e^-4	0.774	NON_SYNONYMOUS_CODING X11Lbeta	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4905271	3R_4905271_SNP [dm3] 3R_9079549_SNP [dm6]	C	A	2.642e^-4	0.774	INTRON pum
3R	14806200	3R_14806200_SNP [dm3] 3R_18980478_SNP [dm6]	A	G	2.644e^-4	0.774	SYNONYMOUS_CODING Smu1 UPSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	645644	2R_645644_SNP [dm3] 2R_4758139_SNP [dm6]	A	C	2.646e^-4	0.774	DOWNSTREAM conu INTERGENIC	transposable element FlyBase
3L	13016579	3L_13016579_SNP [dm3] 3L_13023479_SNP [dm6]	C	T	2.654e^-4	0.774	SPLICE_SITE_REGION RpS12 UPSTREAM snoRNA:Me28S-A774b & 2 others INTRON RpS12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8029458	3L_8029458_SNP [dm3] 3L_8036358_SNP [dm6]	C	G	2.659e^-4	0.774	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	847132	3L_847132_SNP [dm3] 3L_847132_SNP [dm6]	C	T	2.660e^-4	0.774	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22087538	3R_22087538_SNP [dm3] 3R_26261816_SNP [dm6]	C	G	2.660e^-4	0.774	UPSTREAM Ald & 1 other DOWNSTREAM CR44321 INTERGENIC
3R	13966225	3R_13966225_SNP [dm3] 3R_18140503_SNP [dm6]	C	T	2.662e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26375932	3R_26375932_SNP [dm3] 3R_30550210_SNP [dm6]	C	A	2.681e^-4	0.774	INTRON tmod
3R	15644677	3R_15644677_DEL [dm3] 3R_19818955_DEL [dm6]	TAA	C	2.682e^-4	0.774	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14581715	2L_14581715_SNP [dm3] 2L_14581715_SNP [dm6]	A	C	2.690e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	23177900	3R_23177900_SNP [dm3] 3R_27352178_SNP [dm6]	G	T	2.691e^-4	0.774	INTRON CG42534
2R	10250623	2R_10250623_INS [dm3] 2R_14363118_INS [dm6]	G	GGG	2.692e^-4	0.774	SPLICE_SITE_REGION Tfb1 UTR_5_PRIME Tfb1 DOWNSTREAM Arc2 INTRON Tfb1	TF binding site BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	5970280	3R_5970280_SNP [dm3] 3R_10144558_SNP [dm6]	A	G	2.699e^-4	0.774	UPSTREAM Invadolysin & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3500949	3L_3500949_INS [dm3] 3L_3500949_INS [dm6]	G	GACTAG	2.707e^-4	0.774	INTRON CG42324
2R	16124235	2R_16124235_SNP [dm3] 2R_20236730_SNP [dm6]	C	T	2.708e^-4	0.774	SYNONYMOUS_CODING CG11099 DOWNSTREAM CG44625
3L	11005491	3L_11005491_SNP [dm3] 3L_11012391_SNP [dm6]	A	T	2.716e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14749156	2R_14749156_SNP [dm3] 2R_18861651_SNP [dm6]	T	C	2.716e^-4	0.774	SYNONYMOUS_CODING Jheh3
3R	12946596	3R_12946596_SNP [dm3] 3R_17120874_SNP [dm6]	C	T	2.722e^-4	0.774	UPSTREAM CG42779 DOWNSTREAM CG34278 INTRON cher
X	14917129	X_14917129_SNP [dm3] X_15023096_SNP [dm6]	T	C	2.732e^-4	0.774	INTRON hiw
3R	25012605	3R_25012605_SNP [dm3] 3R_29186883_SNP [dm6]	T	C	2.742e^-4	0.774	INTRON CG14509
2R	4108246	2R_4108246_SNP [dm3] 2R_8220741_SNP [dm6]	G	C	2.743e^-4	0.774	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_inv
3R	5680291	3R_5680291_SNP [dm3] 3R_9854569_SNP [dm6]	C	A	2.747e^-4	0.774	INTRON Teh1
X	2124766	X_2124766_SNP [dm3] X_2230733_SNP [dm6]	C	T	2.748e^-4	0.774	SYNONYMOUS_CODING pcx
3R	27135758	3R_27135758_INS [dm3] 3R_31310036_INS [dm6]	A	ACTGCTGCG	2.750e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15093261	3R_15093261_SNP [dm3] 3R_19267539_SNP [dm6]	T	A	2.751e^-4	0.774	INTERGENIC
3L	16201577	3L_16201577_SNP [dm3] 3L_16208477_SNP [dm6]	A	G	2.753e^-4	0.774	INTERGENIC
2L	2323525	2L_2323525_SNP [dm3] 2L_2323525_SNP [dm6]	C	A	2.769e^-4	0.774	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3L	10138635	3L_10138635_SNP [dm3] 3L_10145535_SNP [dm6]	C	A	2.772e^-4	0.774	INTERGENIC
3L	7022165	3L_7022165_SNP [dm3] 3L_7029065_SNP [dm6]	G	C	2.776e^-4	0.774	INTRON Mp
3R	18933104	3R_18933104_INS [dm3] 3R_23107382_INS [dm6]	A	AA	2.778e^-4	0.774	INTRON CG13830
2R	12975789	2R_12975789_SNP [dm3] 2R_17088284_SNP [dm6]	A	T	2.782e^-4	0.774	UPSTREAM CG30460 DOWNSTREAM Sply INTERGENIC
2R	4632113	2R_4632113_SNP [dm3] 2R_8744608_SNP [dm6]	A	G	2.784e^-4	0.774	UPSTREAM CR44277 INTRON CG8740
X	919947	X_919947_SNP [dm3] X_1025914_SNP [dm6]	C	G	2.784e^-4	0.774	UPSTREAM CG3021 INTRON su_w[a]_ & 2 others	TF binding site mE1_TFBS_HSA
3L	2142829	3L_2142829_SNP [dm3] 3L_2142829_SNP [dm6]	A	T	2.786e^-4	0.774	INTRON zormin
3R	23413808	3R_23413808_SNP [dm3] 3R_27588086_SNP [dm6]	G	A	2.788e^-4	0.774	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5677913	3R_5677913_SNP [dm3] 3R_9852191_SNP [dm6]	G	C	2.789e^-4	0.774	INTRON Teh1
3R	20502163	3R_20502163_SNP [dm3] 3R_24676441_SNP [dm6]	C	T	2.801e^-4	0.774	INTRON slo
2L	10581351	2L_10581351_SNP [dm3] 2L_10581351_SNP [dm6]	A	T	2.809e^-4	0.774	NON_SYNONYMOUS_CODING CG34161 INTRON Trim9
3R	18887319	3R_18887319_SNP [dm3] 3R_23061597_SNP [dm6]	C	T	2.811e^-4	0.774	UTR_5_PRIME Ublcp1 UPSTREAM sav	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2R	5259454	2R_5259454_SNP [dm3] 2R_9371949_SNP [dm6]	C	A	2.813e^-4	0.774	INTRON CG13954
3L	9061135	3L_9061135_SNP [dm3] 3L_9068035_SNP [dm6]	T	A	2.818e^-4	0.774	UTR_3_PRIME CG4911
2L	8044259	2L_8044259_SNP [dm3] 2L_8044259_SNP [dm6]	A	T	2.819e^-4	0.774	INTRON CG7466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16881759	X_16881759_SNP [dm3] X_16987726_SNP [dm6]	T	C	2.819e^-4	0.774	UPSTREAM CG45002 INTRON CG45002	TF binding site mE1_TFBS_HSA
2R	5383656	2R_5383656_SNP [dm3] 2R_9496151_SNP [dm6]	A	G	2.827e^-4	0.774	INTRON Wnt2
3R	24877220	3R_24877220_SNP [dm3] 3R_29051498_SNP [dm6]	T	C	2.831e^-4	0.774	SPLICE_SITE_REGION CG11841 DOWNSTREAM CG11837 INTRON CG11841	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13990696	2L_13990696_SNP [dm3] 2L_13990696_SNP [dm6]	C	A	2.832e^-4	0.774	INTRON rk
3R	4905303	3R_4905303_DEL [dm3] 3R_9079581_DEL [dm6]	ATATGCCA	A	2.838e^-4	0.774	INTRON pum
3L	2578238	3L_2578238_SNP [dm3] 3L_2578238_SNP [dm6]	A	C	2.839e^-4	0.774	INTRON msn
2R	13924820	2R_13924820_SNP [dm3] 2R_18037315_SNP [dm6]	A	G	2.839e^-4	0.774	INTERGENIC
2R	14556605	2R_14556605_SNP [dm3] 2R_18669100_SNP [dm6]	A	G	2.848e^-4	0.774	INTRON edl
3R	17648859	3R_17648859_SNP [dm3] 3R_21823137_SNP [dm6]	C	G	2.851e^-4	0.774	UPSTREAM CASK & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10921289	3L_10921289_SNP [dm3] 3L_10928189_SNP [dm6]	G	T	2.852e^-4	0.774	INTERGENIC
3L	6365137	3L_6365137_SNP [dm3] 3L_6372037_SNP [dm6]	G	A	2.853e^-4	0.774	INTERGENIC
2L	15496427	2L_15496427_SNP [dm3] 2L_15496427_SNP [dm6]	A	G	2.868e^-4	0.774	INTERGENIC
2R	16948297	2R_16948297_SNP [dm3] 2R_21060792_SNP [dm6]	G	A	2.870e^-4	0.774	START_GAINED mRpL54 UTR_5_PRIME mRpL54 UPSTREAM CG15653 & 1 other DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	11100407	3R_11100407_SNP [dm3] 3R_15274685_SNP [dm6]	A	G	2.874e^-4	0.774	UTR_5_PRIME Cp190 UPSTREAM CG4338 INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_sens
3L	5068710	3L_5068710_SNP [dm3] 3L_5068710_SNP [dm6]	C	G	2.889e^-4	0.774	INTRON Con
3L	3022138	3L_3022138_SNP [dm3] 3L_3022138_SNP [dm6]	C	T	2.891e^-4	0.774	INTERGENIC
3L	12533865	3L_12533865_INS [dm3] 3L_12540765_INS [dm6]	G	GTTAG	2.900e^-4	0.774	UPSTREAM CR43612 INTRON sowah	TF binding site mE1_TFBS_Kr
3R	23458615	3R_23458615_SNP [dm3] 3R_27632893_SNP [dm6]	C	A	2.900e^-4	0.774	SYNONYMOUS_CODING Tusp	TF binding site BDTNP1_TFBS_hb mE1_TFBS_chinmo
X	4276437	X_4276437_DEL [dm3] X_4382404_DEL [dm6]	TACAGTATTCACAGTTTATT...	T	2.913e^-4	0.774	UTR_3_PRIME CG12688
3R	11094557	3R_11094557_SNP [dm3] 3R_15268835_SNP [dm6]	G	A	2.916e^-4	0.774	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	2138078	2L_2138078_SNP [dm3] 2L_2138078_SNP [dm6]	A	G	2.927e^-4	0.774	SYNONYMOUS_CODING tho2 DOWNSTREAM GlyP	TF binding site mE1_TFBS_sens
2L	2633971	2L_2633971_DEL [dm3] 2L_2633971_DEL [dm6]	TGTTG	T	2.935e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18454103	3R_18454103_SNP [dm3] 3R_22628381_SNP [dm6]	A	G	2.942e^-4	0.774	UPSTREAM CR43475 INTRON loco	regulatory region REDfly_CRMs
3L	19300024	3L_19300024_SNP [dm3] 3L_19306924_SNP [dm6]	C	T	2.942e^-4	0.774	INTRON pip	TF binding site mE1_TFBS_sens
X	19163795	X_19163795_SNP [dm3] X_19269762_SNP [dm6]	G	A	2.951e^-4	0.774	SYNONYMOUS_CODING Vav UPSTREAM CG8010	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
3L	6365125	3L_6365125_SNP [dm3] 3L_6372025_SNP [dm6]	T	G	2.953e^-4	0.774	INTERGENIC
2R	9244328	2R_9244328_SNP [dm3] 2R_13356823_SNP [dm6]	C	T	2.953e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20334262	3R_20334262_SNP [dm3] 3R_24508540_SNP [dm6]	G	T	2.960e^-4	0.774	DOWNSTREAM nAChRbeta2 INTERGENIC
2L	4200242	2L_4200242_SNP [dm3] 2L_4200242_SNP [dm6]	G	A	2.962e^-4	0.774	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7010752	2L_7010752_SNP [dm3] 2L_7010752_SNP [dm6]	G	C	2.969e^-4	0.774	UPSTREAM uif INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2244943	2L_2244943_SNP [dm3] 2L_2244943_SNP [dm6]	C	G	2.973e^-4	0.774	UTR_3_PRIME CG4267 UPSTREAM CR42859 DOWNSTREAM CG4267
3L	4053394	3L_4053394_SNP [dm3] 3L_4053394_SNP [dm6]	C	A	2.974e^-4	0.774	INTRON CG1136
3L	4991046	3L_4991046_SNP [dm3] 3L_4991046_SNP [dm6]	C	T	2.975e^-4	0.774	INTRON Con
2R	6884237	2R_6884237_SNP [dm3] 2R_10996732_SNP [dm6]	C	A	2.975e^-4	0.774	INTRON luna
3L	20369456	3L_20369456_SNP [dm3] 3L_20376356_SNP [dm6]	C	G	2.976e^-4	0.774	UTR_5_PRIME RhoBTB UPSTREAM Ide	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	20190416	2R_20190416_SNP [dm3] 2R_24302893_SNP [dm6]	T	G	2.979e^-4	0.774	INTERGENIC
3L	3951025	3L_3951025_SNP [dm3] 3L_3951025_SNP [dm6]	C	G	2.980e^-4	0.774	DOWNSTREAM CG14984 INTERGENIC
2L	13641376	2L_13641376_SNP [dm3] 2L_13641376_SNP [dm6]	A	C	2.994e^-4	0.774	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5454156	2L_5454156_SNP [dm3] 2L_5454156_SNP [dm6]	T	C	2.999e^-4	0.774	INTERGENIC
3R	18407959	3R_18407959_SNP [dm3] 3R_22582237_SNP [dm6]	G	C	3.004e^-4	0.774	NON_SYNONYMOUS_CODING Dph5 DOWNSTREAM CSN6	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	13641369	2L_13641369_SNP [dm3] 2L_13641369_SNP [dm6]	G	A	3.004e^-4	0.774	UPSTREAM ics INTRON ics	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17824208	3L_17824208_SNP [dm3] 3L_17831108_SNP [dm6]	T	G	3.006e^-4	0.774	INTRON Grd
3R	22070380	3R_22070380_SNP [dm3] 3R_26244658_SNP [dm6]	G	C	3.008e^-4	0.774	INTRON CR42745
3R	8181448	3R_8181448_SNP [dm3] 3R_12355726_SNP [dm6]	A	T	3.017e^-4	0.774	NON_SYNONYMOUS_CODING MBD-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17796486	2R_17796486_SNP [dm3] 2R_21908981_SNP [dm6]	A	G	3.020e^-4	0.774	INTRON Fili
3L	15007586	3L_15007586_DEL [dm3] 3L_15014486_DEL [dm6]	TT	T	3.020e^-4	0.774	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18688276	3R_18688276_SNP [dm3] 3R_22862554_SNP [dm6]	G	C	3.022e^-4	0.774	INTERGENIC
2L	920329	2L_920329_SNP [dm3] 2L_920329_SNP [dm6]	G	A	3.022e^-4	0.774	INTERGENIC
2R	5073573	2R_5073573_SNP [dm3] 2R_9186068_SNP [dm6]	G	A	3.025e^-4	0.774	UTR_5_PRIME ltd DOWNSTREAM CG8026 & 1 other INTRON ltd	regulatory region REDfly_CRMs
3L	17824180	3L_17824180_SNP [dm3] 3L_17831080_SNP [dm6]	A	T	3.039e^-4	0.774	INTRON Grd
3L	14047240	3L_14047240_SNP [dm3] 3L_14054140_SNP [dm6]	T	C	3.045e^-4	0.774	NON_SYNONYMOUS_CODING CG32138 DOWNSTREAM CG43986	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	8029443	3L_8029443_MNP [dm3] 3L_8036343_MNP [dm6]	CAG	TCA	3.045e^-4	0.774	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2L	15496445	2L_15496445_SNP [dm3] 2L_15496445_SNP [dm6]	C	A	3.050e^-4	0.774	INTERGENIC
3R	18986026	3R_18986026_SNP [dm3] 3R_23160304_SNP [dm6]	C	T	3.053e^-4	0.774	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC
X	5331407	X_5331407_SNP [dm3] X_5437374_SNP [dm6]	C	T	3.062e^-4	0.774	INTERGENIC
2R	5259502	2R_5259502_SNP [dm3] 2R_9371997_SNP [dm6]	C	T	3.065e^-4	0.774	INTRON CG13954
3R	10109658	3R_10109658_SNP [dm3] 3R_14283936_SNP [dm6]	A	C	3.070e^-4	0.774	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	6362434	3R_6362434_SNP [dm3] 3R_10536712_SNP [dm6]	G	C	3.078e^-4	0.774	INTRON hth	TF binding site BDTNP1_TFBS_dl
3L	2651851	3L_2651851_SNP [dm3] 3L_2651851_SNP [dm6]	G	A	3.081e^-4	0.774	UPSTREAM Snup & 2 others INTERGENIC
2L	7602901	2L_7602901_SNP [dm3] 2L_7602901_SNP [dm6]	A	G	3.084e^-4	0.774	INTERGENIC
3R	10109249	3R_10109249_SNP [dm3] 3R_14283527_SNP [dm6]	G	T	3.086e^-4	0.774	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	4609609	2R_4609609_SNP [dm3] 2R_8722104_SNP [dm6]	A	T	3.086e^-4	0.774	UPSTREAM CG30357 INTRON CG14767	TF binding site mE1_TFBS_Trl
2L	4288973	2L_4288973_SNP [dm3] 2L_4288973_SNP [dm6]	T	C	3.094e^-4	0.774	INTRON tutl
3R	21900342	3R_21900342_SNP [dm3] 3R_26074620_SNP [dm6]	G	A	3.098e^-4	0.774	INTERGENIC
3R	9157443	3R_9157443_INS [dm3] 3R_13331721_INS [dm6]	A	ATTGTA	3.098e^-4	0.774	INTRON PK2-R2
2R	17094125	2R_17094125_SNP [dm3] 2R_21206620_SNP [dm6]	T	C	3.102e^-4	0.774	INTRON CG44245 & 1 other
3L	20637862	3L_20637862_SNP [dm3] 3L_20644762_SNP [dm6]	C	A	3.107e^-4	0.774	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10085695	2R_10085695_SNP [dm3] 2R_14198190_SNP [dm6]	T	C	3.107e^-4	0.774	SYNONYMOUS_CODING CG30069 DOWNSTREAM VGAT
3L	22300888	3L_22300888_SNP [dm3] 3L_22307788_SNP [dm6]	C	T	3.108e^-4	0.774	SYNONYMOUS_CODING Ten-m	TF binding site BDTNP1_TFBS_sna
3R	5965640	3R_5965640_DEL [dm3] 3R_10139918_DEL [dm6]	CACCTCTTTC	C	3.109e^-4	0.774	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
2R	4108600	2R_4108600_SNP [dm3] 2R_8221095_SNP [dm6]	C	A	3.113e^-4	0.774	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	15783265	3R_15783265_SNP [dm3] 3R_19957543_SNP [dm6]	T	A	3.114e^-4	0.774	INTRON Hs6st
3R	20517370	3R_20517370_DEL [dm3] 3R_24691648_DEL [dm6]	TATAACATAACA...	T	3.116e^-4	0.774	INTRON slo
2R	6950430	2R_6950430_SNP [dm3] 2R_11062925_SNP [dm6]	C	T	3.121e^-4	0.774	INTRON luna
3R	18594531	3R_18594531_SNP [dm3] 3R_22768809_SNP [dm6]	A	T	3.126e^-4	0.774	UPSTREAM CG43091 DOWNSTREAM CG43092 & 1 other INTRON Usp12-46 & 1 other
3R	25159259	3R_25159259_SNP [dm3] 3R_29333537_SNP [dm6]	A	C	3.136e^-4	0.774	INTERGENIC
2R	5259336	2R_5259336_SNP [dm3] 2R_9371831_SNP [dm6]	A	G	3.149e^-4	0.774	INTRON CG13954	TF binding site mE1_TFBS_cad
X	9884708	X_9884708_SNP [dm3] X_9990675_SNP [dm6]	A	G	3.149e^-4	0.774	INTRON CG32694
2R	12665867	2R_12665867_SNP [dm3] 2R_16778362_SNP [dm6]	A	G	3.151e^-4	0.774	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5100406	3L_5100406_SNP [dm3] 3L_5100406_SNP [dm6]	G	C	3.154e^-4	0.774	UPSTREAM CR34047 INTERGENIC
3R	19067028	3R_19067028_DEL [dm3] 3R_23241306_DEL [dm6]	TCACGTTAGTGTAAAGT...	T	3.155e^-4	0.774	INTRON CG4467
2L	14050752	2L_14050752_SNP [dm3] 2L_14050752_SNP [dm6]	T	G	3.156e^-4	0.774	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3L	3074505	3L_3074505_SNP [dm3] 3L_3074505_SNP [dm6]	T	C	3.169e^-4	0.774	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	17824205	3L_17824205_SNP [dm3] 3L_17831105_SNP [dm6]	C	A	3.179e^-4	0.774	INTRON Grd
3R	22096883	3R_22096883_SNP [dm3] 3R_26271161_SNP [dm6]	A	C	3.183e^-4	0.774	INTRON CG6154
2R	9226260	2R_9226260_SNP [dm3] 2R_13338755_SNP [dm6]	T	G	3.185e^-4	0.774	INTRON CR44206	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	9028138	2L_9028138_SNP [dm3] 2L_9028138_SNP [dm6]	A	G	3.185e^-4	0.774	INTRON CG9582 & 1 other
2L	17411284	2L_17411284_SNP [dm3] 2L_17411284_SNP [dm6]	C	A	3.201e^-4	0.774	SYNONYMOUS_CODING CG15141 UPSTREAM Rpb11 DOWNSTREAM CG31803	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	18698614	3L_18698614_SNP [dm3] 3L_18705514_SNP [dm6]	G	T	3.210e^-4	0.774	INTERGENIC
3R	5081615	3R_5081615_SNP [dm3] 3R_9255893_SNP [dm6]	A	G	3.213e^-4	0.774	NON_SYNONYMOUS_CODING CG16734 DOWNSTREAM CG16736	TF binding site mE1_TFBS_sens
3L	12364514	3L_12364514_SNP [dm3] 3L_12371414_SNP [dm6]	A	C	3.216e^-4	0.774	INTRON Ncc69
3L	5653919	3L_5653919_SNP [dm3] 3L_5660819_SNP [dm6]	G	A	3.223e^-4	0.774	INTRON sif & 1 other
3L	16853555	3L_16853555_SNP [dm3] 3L_16860455_SNP [dm6]	A	G	3.226e^-4	0.774	UTR_3_PRIME sinah UPSTREAM CG13029 INTRON Rh4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	20931353	3R_20931353_SNP [dm3] 3R_25105631_SNP [dm6]	G	A	3.227e^-4	0.774	SYNONYMOUS_CODING CG34027
X	22071935	X_22071935_SNP [dm3] X_22670099_SNP [dm6]	G	A	3.228e^-4	0.774	INTRON CR44997
3R	25219905	3R_25219905_SNP [dm3] 3R_29394183_SNP [dm6]	T	G	3.229e^-4	0.774	INTRON Ptp99A
3R	10041252	3R_10041252_SNP [dm3] 3R_14215530_SNP [dm6]	C	T	3.231e^-4	0.774	NON_SYNONYMOUS_CODING CG9649 UPSTREAM Dop1R1
3R	22075491	3R_22075491_INS [dm3] 3R_26249769_INS [dm6]	A	ATC	3.236e^-4	0.774	INTRON CR42745
3L	5654517	3L_5654517_SNP [dm3] 3L_5661417_SNP [dm6]	G	A	3.237e^-4	0.774	SYNONYMOUS_CODING Sse INTRON sif	TF binding site mE1_TFBS_sens
2L	9191493	2L_9191493_SNP [dm3] 2L_9191493_SNP [dm6]	C	G	3.247e^-4	0.774	INTRON tai
3R	25742740	3R_25742740_SNP [dm3] 3R_29917018_SNP [dm6]	G	T	3.250e^-4	0.774	SYNONYMOUS_CODING trp UTR_3_PRIME trp
2R	11156869	2R_11156869_SNP [dm3] 2R_15269364_SNP [dm6]	T	C	3.251e^-4	0.774	INTRON Trpm
3R	17648858	3R_17648858_SNP [dm3] 3R_21823136_SNP [dm6]	G	T	3.256e^-4	0.774	UPSTREAM CASK & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	7129564	2R_7129564_SNP [dm3] 2R_11242059_SNP [dm6]	C	T	3.258e^-4	0.774	SYNONYMOUS_CODING Listericin
3L	13963220	3L_13963220_SNP [dm3] 3L_13970120_SNP [dm6]	T	C	3.260e^-4	0.774	NON_SYNONYMOUS_CODING ssp2 UTR_3_PRIME Nxf3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16875999	3R_16875999_SNP [dm3] 3R_21050277_SNP [dm6]	C	T	3.261e^-4	0.774	NON_SYNONYMOUS_CODING CG17279 SYNONYMOUS_CODING CG17279
3L	3076006	3L_3076006_SNP [dm3] 3L_3076006_SNP [dm6]	C	G	3.262e^-4	0.774	INTRON CG11486	TF binding site mE1_TFBS_cad
3R	22096692	3R_22096692_SNP [dm3] 3R_26270970_SNP [dm6]	G	A	3.265e^-4	0.774	INTRON CG6154
3L	1422679	3L_1422679_SNP [dm3] 3L_1422679_SNP [dm6]	C	A	3.265e^-4	0.774	NON_SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9028026	2L_9028026_SNP [dm3] 2L_9028026_SNP [dm6]	C	A	3.266e^-4	0.774	INTRON CG9582 & 1 other
2R	20186708	2R_20186708_SNP [dm3] 2R_24299185_SNP [dm6]	T	C	3.267e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14011579	2L_14011579_SNP [dm3] 2L_14011579_SNP [dm6]	G	C	3.269e^-4	0.774	UPSTREAM tRNA:Q:34E INTERGENIC
3L	22445385	3L_22445385_SNP [dm3] 3L_22452285_SNP [dm6]	G	A	3.271e^-4	0.774	INTERGENIC
2R	13215110	2R_13215110_SNP [dm3] 2R_17327605_SNP [dm6]	A	T	3.273e^-4	0.774	INTRON mbl
3R	4129483	3R_4129483_SNP [dm3] 3R_8303761_SNP [dm6]	T	G	3.274e^-4	0.774	SYNONYMOUS_CODING nac DOWNSTREAM mRpL1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17028148	2R_17028148_SNP [dm3] 2R_21140643_SNP [dm6]	C	A	3.284e^-4	0.774	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	20358687	3L_20358687_SNP [dm3] 3L_20365587_SNP [dm6]	G	C	3.286e^-4	0.774	INTRON Toll-9
2L	9028142	2L_9028142_SNP [dm3] 2L_9028142_SNP [dm6]	G	C	3.287e^-4	0.774	INTRON CG9582 & 1 other
3L	19328457	3L_19328457_DEL [dm3] 3L_19335357_DEL [dm6]	ACGTAAGTG	A	3.290e^-4	0.774	INTRON pip
3L	11133759	3L_11133759_SNP [dm3] 3L_11140659_SNP [dm6]	T	C	3.290e^-4	0.774	INTRON CG32082
2R	10514538	2R_10514538_SNP [dm3] 2R_14627033_SNP [dm6]	C	G	3.291e^-4	0.774	INTERGENIC
3R	18520139	3R_18520139_SNP [dm3] 3R_22694417_SNP [dm6]	G	T	3.301e^-4	0.774	SYNONYMOUS_CODING Nup133 UPSTREAM cd	TF binding site mE1_TFBS_cad
3R	17998480	3R_17998480_SNP [dm3] 3R_22172758_SNP [dm6]	T	A	3.304e^-4	0.774	INTRON SKIP	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc mE1_TFBS_HSA
3L	5880011	3L_5880011_SNP [dm3] 3L_5886911_SNP [dm6]	A	G	3.306e^-4	0.774	INTERGENIC
3L	3420985	3L_3420985_SNP [dm3] 3L_3420985_SNP [dm6]	A	G	3.309e^-4	0.774	INTRON sty	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3R	15607274	3R_15607274_SNP [dm3] 3R_19781552_SNP [dm6]	T	C	3.315e^-4	0.774	SYNONYMOUS_CODING CG11407 DOWNSTREAM CG11391	TF binding site mE1_TFBS_sens
2L	4806287	2L_4806287_SNP [dm3] 2L_4806287_SNP [dm6]	A	C	3.329e^-4	0.776	INTERGENIC
2R	16060652	2R_16060652_SNP [dm3] 2R_20173147_SNP [dm6]	A	C	3.334e^-4	0.776	INTERGENIC
X	12318134	X_12318134_SNP [dm3] X_12424101_SNP [dm6]	T	A	3.336e^-4	0.776	INTERGENIC
X	3600393	X_3600393_SNP [dm3] X_3706360_SNP [dm6]	T	C	3.337e^-4	0.776	INTRON Rala
3L	11345085	3L_11345085_SNP [dm3] 3L_11351985_SNP [dm6]	G	C	3.342e^-4	0.776	INTERGENIC
3R	24132627	3R_24132627_SNP [dm3] 3R_28306905_SNP [dm6]	T	G	3.357e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	13098132	3L_13098132_SNP [dm3] 3L_13105032_SNP [dm6]	T	C	3.362e^-4	0.777	INTERGENIC
2R	19821631	2R_19821631_SNP [dm3] 2R_23934108_SNP [dm6]	C	G	3.367e^-4	0.777	UPSTREAM Ca-P60A INTRON Ca-P60A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	20303074	2R_20303074_SNP [dm3] 2R_24415551_SNP [dm6]	A	G	3.371e^-4	0.777	UTR_3_PRIME prom DOWNSTREAM CG45069 & 1 other
3L	1908283	3L_1908283_SNP [dm3] 3L_1908283_SNP [dm6]	T	G	3.372e^-4	0.777	INTRON CG1887
3L	11144445	3L_11144445_SNP [dm3] 3L_11151345_SNP [dm6]	A	G	3.386e^-4	0.777	UTR_5_PRIME CG32082 UPSTREAM CG6216
3R	17997827	3R_17997827_SNP [dm3] 3R_22172105_SNP [dm6]	G	T	3.396e^-4	0.777	INTRON SKIP
3L	8820905	3L_8820905_SNP [dm3] 3L_8827805_SNP [dm6]	A	C	3.405e^-4	0.777	UTR_5_PRIME dally	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8029516	3L_8029516_SNP [dm3] 3L_8036416_SNP [dm6]	C	T	3.407e^-4	0.777	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3R	3270264	3R_3270264_SNP [dm3] 3R_7444542_SNP [dm6]	A	G	3.409e^-4	0.777	INTERGENIC
2R	14707626	2R_14707626_SNP [dm3] 2R_18820121_SNP [dm6]	T	A	3.409e^-4	0.777	INTRON Phb2	TF binding site BDTNP1_TFBS_dl
3R	16347543	3R_16347543_SNP [dm3] 3R_20521821_SNP [dm6]	C	G	3.410e^-4	0.777	INTERGENIC
3L	17132504	3L_17132504_SNP [dm3] 3L_17139404_SNP [dm6]	G	A	3.422e^-4	0.777	INTRON Rbp6
3R	8435908	3R_8435908_SNP [dm3] 3R_12610186_SNP [dm6]	C	A	3.431e^-4	0.777	INTERGENIC
3R	19708381	3R_19708381_SNP [dm3] 3R_23882659_SNP [dm6]	G	A	3.436e^-4	0.777	INTRON Pli
3R	16347684	3R_16347684_SNP [dm3] 3R_20521962_SNP [dm6]	T	C	3.437e^-4	0.777	INTERGENIC
2R	12665754	2R_12665754_SNP [dm3] 2R_16778249_SNP [dm6]	A	G	3.445e^-4	0.777	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13654074	3R_13654074_SNP [dm3] 3R_17828352_SNP [dm6]	G	A	3.445e^-4	0.777	INTRON tinc	TF binding site mE1_TFBS_cad
3R	26038796	3R_26038796_SNP [dm3] 3R_30213074_SNP [dm6]	T	C	3.454e^-4	0.777	DOWNSTREAM CecB & 1 other EXON Cec2
3R	25153396	3R_25153396_SNP [dm3] 3R_29327674_SNP [dm6]	G	A	3.458e^-4	0.777	INTERGENIC
3R	25742576	3R_25742576_SNP [dm3] 3R_29916854_SNP [dm6]	A	C	3.458e^-4	0.777	INTRON trp
3L	22317900	3L_22317900_SNP [dm3] 3L_22324800_SNP [dm6]	T	G	3.459e^-4	0.777	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17592340	2L_17592340_SNP [dm3] 2L_17592340_SNP [dm6]	C	T	3.470e^-4	0.777	UPSTREAM Sytalpha & 1 other INTRON Sytalpha
X	7797412	X_7797412_SNP [dm3] X_7903379_SNP [dm6]	C	T	3.474e^-4	0.777	DOWNSTREAM dpr14 INTRON bys	TF binding site mE1_TFBS_sens
3R	25115614	3R_25115614_SNP [dm3] 3R_29289892_SNP [dm6]	A	G	3.476e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26449308	3R_26449308_SNP [dm3] 3R_30623586_SNP [dm6]	A	G	3.483e^-4	0.777	INTERGENIC
2R	9639851	2R_9639851_SNP [dm3] 2R_13752346_SNP [dm6]	T	C	3.489e^-4	0.777	INTERGENIC
3R	18264970	3R_18264970_SNP [dm3] 3R_22439248_SNP [dm6]	G	A	3.495e^-4	0.777	DOWNSTREAM CG12499 INTERGENIC
2R	19617880	2R_19617880_SNP [dm3] 2R_23730357_SNP [dm6]	T	G	3.506e^-4	0.777	INTRON Sesn
2L	4806314	2L_4806314_SNP [dm3] 2L_4806314_SNP [dm6]	A	T	3.506e^-4	0.777	INTERGENIC
X	13051724	X_13051724_SNP [dm3] X_13157691_SNP [dm6]	C	T	3.508e^-4	0.777	UTR_3_PRIME Bap60 DOWNSTREAM CG4332
2L	14050711	2L_14050711_SNP [dm3] 2L_14050711_SNP [dm6]	A	G	3.512e^-4	0.777	INTRON nAChRalpha5
3L	6689489	3L_6689489_SNP [dm3] 3L_6696389_SNP [dm6]	C	T	3.512e^-4	0.777	INTRON SP1173
3R	9157407	3R_9157407_SNP [dm3] 3R_13331685_SNP [dm6]	G	A	3.539e^-4	0.777	INTRON PK2-R2
3R	4276936	3R_4276936_SNP [dm3] 3R_8451214_SNP [dm6]	G	C	3.541e^-4	0.777	INTRON CG45263
2R	1603505	2R_1603505_SNP [dm3] 2R_5716000_SNP [dm6]	C	T	3.542e^-4	0.777	INTRON ap	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	17613076	2L_17613076_SNP [dm3] 2L_17613076_SNP [dm6]	T	C	3.543e^-4	0.777	INTERGENIC
3R	4905328	3R_4905328_SNP [dm3] 3R_9079606_SNP [dm6]	T	G	3.544e^-4	0.777	INTRON pum
3R	22096886	3R_22096886_DEL [dm3] 3R_26271164_DEL [dm6]	AC	A	3.551e^-4	0.777	INTRON CG6154
3L	5913246	3L_5913246_SNP [dm3] 3L_5920146_SNP [dm6]	C	G	3.552e^-4	0.777	SYNONYMOUS_CODING CG10483 DOWNSTREAM CR45167	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1912703	3L_1912703_SNP [dm3] 3L_1912703_SNP [dm6]	A	G	3.575e^-4	0.777	INTERGENIC
X	21202902	X_21202902_SNP [dm3] X_21331875_SNP [dm6]	C	G	3.576e^-4	0.777	UTR_3_PRIME tty
2R	12665612	2R_12665612_SNP [dm3] 2R_16778107_SNP [dm6]	T	A	3.582e^-4	0.777	UPSTREAM Vkor INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12156143	X_12156143_SNP [dm3] X_12262110_SNP [dm6]	A	G	3.585e^-4	0.777	INTRON Ten-a
2R	4112038	2R_4112038_SNP [dm3] 2R_8224533_SNP [dm6]	C	T	3.588e^-4	0.777	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_sens
2R	11709090	2R_11709090_SNP [dm3] 2R_15821585_SNP [dm6]	T	C	3.588e^-4	0.777	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1
3R	20911957	3R_20911957_SNP [dm3] 3R_25086235_SNP [dm6]	G	A	3.591e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8239843	3L_8239843_SNP [dm3] 3L_8246743_SNP [dm6]	T	C	3.600e^-4	0.777	INTRON Dscam4
3R	22760213	3R_22760213_SNP [dm3] 3R_26934491_SNP [dm6]	A	C	3.602e^-4	0.777	INTRON sda
3R	18920059	3R_18920059_SNP [dm3] 3R_23094337_SNP [dm6]	G	A	3.615e^-4	0.777	DOWNSTREAM CG6726 INTRON CG13830 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19894828	3R_19894828_SNP [dm3] 3R_24069106_SNP [dm6]	T	C	3.615e^-4	0.777	INTRON 4EHP
2L	13614474	2L_13614474_INS [dm3] 2L_13614474_INS [dm6]	C	CC	3.627e^-4	0.777	INTRON kuz
2L	4288981	2L_4288981_SNP [dm3] 2L_4288981_SNP [dm6]	C	T	3.627e^-4	0.777	INTRON tutl
3R	5965756	3R_5965756_SNP [dm3] 3R_10140034_SNP [dm6]	C	G	3.635e^-4	0.777	UPSTREAM tws DOWNSTREAM TAF1B INTERGENIC	TF binding site mE1_TFBS_Trl
3R	26067630	3R_26067630_INS [dm3] 3R_30241908_INS [dm6]	T	TTAT	3.642e^-4	0.777	INTRON CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13648134	3R_13648134_DEL [dm3] 3R_17822412_DEL [dm6]	GC	T	3.645e^-4	0.777	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2323474	2L_2323474_SNP [dm3] 2L_2323474_SNP [dm6]	G	C	3.653e^-4	0.777	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
3L	6941284	3L_6941284_SNP [dm3] 3L_6948184_SNP [dm6]	T	C	3.653e^-4	0.777	INTRON tow
2R	14356070	2R_14356070_SNP [dm3] 2R_18468565_SNP [dm6]	T	A	3.666e^-4	0.777	INTRON CG30116
X	11901360	X_11901360_DEL [dm3] X_12007327_DEL [dm6]	TT	T	3.669e^-4	0.777	UTR_5_PRIME CG1806	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	27141817	3R_27141817_SNP [dm3] 3R_31316095_SNP [dm6]	G	A	3.671e^-4	0.777	INTRON CG34347
X	12616618	X_12616618_SNP [dm3] X_12722585_SNP [dm6]	T	G	3.671e^-4	0.777	INTRON Smr & 1 other	TF binding site mE1_TFBS_HSA
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	3.674e^-4	0.777	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	3789198	3R_3789198_SNP [dm3] 3R_7963476_SNP [dm6]	T	C	3.674e^-4	0.777	UPSTREAM dsx INTRON dsx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	10353181	3L_10353181_SNP [dm3] 3L_10360081_SNP [dm6]	T	C	3.678e^-4	0.777	EXON CR44327	TF binding site mE1_TFBS_cad
3R	21067901	3R_21067901_SNP [dm3] 3R_25242179_SNP [dm6]	A	T	3.684e^-4	0.777	DOWNSTREAM to & 1 other INTRON CG11854
3R	4193106	3R_4193106_SNP [dm3] 3R_8367384_SNP [dm6]	T	A	3.685e^-4	0.777	UTR_3_PRIME CG45263 INTRON CG45263
2R	7172811	2R_7172811_SNP [dm3] 2R_11285306_SNP [dm6]	A	T	3.689e^-4	0.777	UTR_3_PRIME fbl6 DOWNSTREAM CG13220
2R	19578711	2R_19578711_SNP [dm3] 2R_23691188_SNP [dm6]	A	G	3.689e^-4	0.777	SYNONYMOUS_CODING CG30183 DOWNSTREAM Pal2	TF binding site mE1_TFBS_cad
3R	15736695	3R_15736695_SNP [dm3] 3R_19910973_SNP [dm6]	A	G	3.690e^-4	0.777	SYNONYMOUS_CODING RhoGAP92B UTR_5_PRIME RhoGAP92B UPSTREAM CR45048
3L	3022122	3L_3022122_DEL [dm3] 3L_3022122_DEL [dm6]	GG	G	3.697e^-4	0.777	INTERGENIC
3L	3022146	3L_3022146_SNP [dm3] 3L_3022146_SNP [dm6]	G	A	3.697e^-4	0.777	INTERGENIC
3R	15607268	3R_15607268_SNP [dm3] 3R_19781546_SNP [dm6]	G	A	3.702e^-4	0.777	SYNONYMOUS_CODING CG11407 DOWNSTREAM CG11391	TF binding site mE1_TFBS_sens
3L	14238495	3L_14238495_SNP [dm3] 3L_14245395_SNP [dm6]	C	G	3.702e^-4	0.777	UPSTREAM CR44560 EXON CR44561
2R	11681210	2R_11681210_SNP [dm3] 2R_15793705_SNP [dm6]	G	A	3.705e^-4	0.777	UPSTREAM tun INTRON Zasp52	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA
3L	14208035	3L_14208035_SNP [dm3] 3L_14214935_SNP [dm6]	T	G	3.705e^-4	0.777	INTRON nuf	TF binding site mE1_TFBS_inv
3R	17272255	3R_17272255_SNP [dm3] 3R_21446533_SNP [dm6]	T	C	3.707e^-4	0.777	UTR_5_PRIME lbe	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	22462819	3R_22462819_SNP [dm3] 3R_26637097_SNP [dm6]	C	T	3.709e^-4	0.777	SYNONYMOUS_CODING TwdlS
X	4279771	X_4279771_SNP [dm3] X_4385738_SNP [dm6]	A	G	3.711e^-4	0.777	INTERGENIC	regulatory region REDfly_CRMs
2L	4144854	2L_4144854_SNP [dm3] 2L_4144854_SNP [dm6]	A	G	3.712e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	18188568	X_18188568_DEL [dm3] X_18294535_DEL [dm6]	GG	G	3.716e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	14523392	X_14523392_SNP [dm3] X_14629359_SNP [dm6]	A	T	3.722e^-4	0.777	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14585641	2L_14585641_SNP [dm3] 2L_14585641_SNP [dm6]	G	A	3.725e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	18594536	3R_18594536_SNP [dm3] 3R_22768814_SNP [dm6]	C	G	3.731e^-4	0.777	UPSTREAM CG43091 DOWNSTREAM CG43092 & 1 other INTRON Usp12-46 & 1 other
3L	3074590	3L_3074590_SNP [dm3] 3L_3074590_SNP [dm6]	A	G	3.732e^-4	0.777	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	19664172	2R_19664172_DEL [dm3] 2R_23776649_DEL [dm6]	TGGCCGAAG	T	3.743e^-4	0.777	INTRON CG9850
3R	11100372	3R_11100372_SNP [dm3] 3R_15274650_SNP [dm6]	T	G	3.745e^-4	0.777	UTR_5_PRIME Cp190 UPSTREAM CG4338 INTRON Cp190	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	9798917	2L_9798917_SNP [dm3] 2L_9798917_SNP [dm6]	T	G	3.746e^-4	0.777	INTRON nAChRalpha6
3L	12364252	3L_12364252_SNP [dm3] 3L_12371152_SNP [dm6]	T	A	3.750e^-4	0.777	INTRON Ncc69
2L	10368694	2L_10368694_SNP [dm3] 2L_10368694_SNP [dm6]	G	A	3.754e^-4	0.777	SYNONYMOUS_CODING rho-5 DOWNSTREAM CG5056	TF binding site mE1_TFBS_cad
3L	2541421	3L_2541421_SNP [dm3] 3L_2541421_SNP [dm6]	A	T	3.754e^-4	0.777	INTRON Spn
2L	12636329	2L_12636329_SNP [dm3] 2L_12636329_SNP [dm6]	A	C	3.760e^-4	0.777	INTRON Ref2
3R	20923567	3R_20923567_SNP [dm3] 3R_25097845_SNP [dm6]	T	C	3.762e^-4	0.777	UTR_5_PRIME CG33096 & 1 other INTRON CG33096	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	15007305	3L_15007305_SNP [dm3] 3L_15014205_SNP [dm6]	C	T	3.765e^-4	0.777	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14669524	3L_14669524_SNP [dm3] 3L_14676424_SNP [dm6]	T	G	3.765e^-4	0.777	INTRON ome & 1 other
3R	25010824	3R_25010824_SNP [dm3] 3R_29185102_SNP [dm6]	A	G	3.773e^-4	0.777	INTRON CG14509
X	15474863	X_15474863_SNP [dm3] X_15580830_SNP [dm6]	G	A	3.774e^-4	0.777	DOWNSTREAM CG7872 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	6394739	2L_6394739_SNP [dm3] 2L_6394739_SNP [dm6]	C	G	3.784e^-4	0.777	INTRON CG42368
3L	6694411	3L_6694411_SNP [dm3] 3L_6701311_SNP [dm6]	A	C	3.784e^-4	0.777	INTRON SP1173
3L	19131521	3L_19131521_SNP [dm3] 3L_19138421_SNP [dm6]	C	T	3.786e^-4	0.777	INTRON CG14082
3R	25766970	3R_25766970_SNP [dm3] 3R_29941248_SNP [dm6]	C	T	3.786e^-4	0.777	SYNONYMOUS_CODING CG15523
2R	16938217	2R_16938217_SNP [dm3] 2R_21050712_SNP [dm6]	G	T	3.787e^-4	0.777	UTR_3_PRIME shg	TF binding site BDTNP1_TFBS_dl
3L	5913222	3L_5913222_SNP [dm3] 3L_5920122_SNP [dm6]	A	G	3.788e^-4	0.777	SYNONYMOUS_CODING CG10483 DOWNSTREAM CR45167	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11108335	X_11108335_SNP [dm3] X_11214302_SNP [dm6]	C	T	3.789e^-4	0.777	INTERGENIC
3L	12845176	3L_12845176_SNP [dm3] 3L_12852076_SNP [dm6]	T	A	3.790e^-4	0.777	DOWNSTREAM Wbp2 INTRON Wbp2
X	10838977	X_10838977_SNP [dm3] X_10944944_SNP [dm6]	T	G	3.799e^-4	0.777	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	22428803	3L_22428803_SNP [dm3] 3L_22435703_SNP [dm6]	A	C	3.815e^-4	0.777	INTERGENIC
3L	6945805	3L_6945805_SNP [dm3] 3L_6952705_SNP [dm6]	G	A	3.824e^-4	0.777	UTR_3_PRIME CG10077 INTRON CG10077
3L	1554257	3L_1554257_SNP [dm3] 3L_1554257_SNP [dm6]	C	G	3.826e^-4	0.777	SYNONYMOUS_CODING Cct2 DOWNSTREAM Cct1	TF binding site mE1_TFBS_cad
3L	5279136	3L_5279136_SNP [dm3] 3L_5286036_SNP [dm6]	C	T	3.827e^-4	0.777	INTERGENIC
2L	4104896	2L_4104896_SNP [dm3] 2L_4104896_SNP [dm6]	T	A	3.829e^-4	0.777	INTRON ed
2R	17952840	2R_17952840_SNP [dm3] 2R_22065335_SNP [dm6]	A	T	3.834e^-4	0.777	INTRON Snp
2R	16947965	2R_16947965_SNP [dm3] 2R_21060460_SNP [dm6]	T	A	3.844e^-4	0.777	SYNONYMOUS_CODING CG15653 UPSTREAM mRpL54 DOWNSTREAM cpa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7033681	3R_7033681_SNP [dm3] 3R_11207959_SNP [dm6]	C	A	3.845e^-4	0.777	SYNONYMOUS_CODING cu DOWNSTREAM SdhC
2L	11930641	2L_11930641_SNP [dm3] 2L_11930641_SNP [dm6]	A	G	3.849e^-4	0.777	INTERGENIC
3L	13098261	3L_13098261_SNP [dm3] 3L_13105161_SNP [dm6]	C	T	3.857e^-4	0.777	INTERGENIC
2L	4137420	2L_4137420_SNP [dm3] 2L_4137420_SNP [dm6]	T	A	3.857e^-4	0.777	INTERGENIC
2L	15528348	2L_15528348_SNP [dm3] 2L_15528348_SNP [dm6]	T	A	3.858e^-4	0.777	INTERGENIC
2L	10901832	2L_10901832_SNP [dm3] 2L_10901832_SNP [dm6]	T	G	3.859e^-4	0.777	UPSTREAM CG14070 INTERGENIC
2R	11450158	2R_11450158_SNP [dm3] 2R_15562653_SNP [dm6]	C	T	3.859e^-4	0.777	DOWNSTREAM CG8195 & 1 other INTERGENIC
3R	9774699	3R_9774699_SNP [dm3] 3R_13948977_SNP [dm6]	G	A	3.867e^-4	0.777	NON_SYNONYMOUS_CODING CG31517	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20190214	2R_20190214_SNP [dm3] 2R_24302691_SNP [dm6]	T	G	3.878e^-4	0.777	INTERGENIC
3R	20505825	3R_20505825_SNP [dm3] 3R_24680103_SNP [dm6]	A	C	3.880e^-4	0.777	INTRON slo
2R	20193568	2R_20193568_SNP [dm3] 2R_24306045_SNP [dm6]	G	A	3.886e^-4	0.777	UTR_5_PRIME betaTub60D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	2636261	2L_2636261_SNP [dm3] 2L_2636261_SNP [dm6]	T	C	3.888e^-4	0.777	INTERGENIC
3L	14649200	3L_14649200_SNP [dm3] 3L_14656100_SNP [dm6]	T	G	3.889e^-4	0.777	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15007894	3L_15007894_SNP [dm3] 3L_15014794_SNP [dm6]	G	T	3.901e^-4	0.777	UTR_3_PRIME Sytbeta UPSTREAM Reck	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn
X	6474765	X_6474765_SNP [dm3] X_6580732_SNP [dm6]	T	C	3.903e^-4	0.777	SYNONYMOUS_CODING CG34417 INTRON CG34417
X	15321086	X_15321086_SNP [dm3] X_15427053_SNP [dm6]	A	G	3.910e^-4	0.777	INTRON Cngl
2R	17099550	2R_17099550_SNP [dm3] 2R_21212045_SNP [dm6]	T	C	3.919e^-4	0.777	SYNONYMOUS_CODING CG44245 DOWNSTREAM CG4302
3R	10453926	3R_10453926_SNP [dm3] 3R_14628204_SNP [dm6]	T	C	3.921e^-4	0.777	SYNONYMOUS_CODING CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	17013276	2R_17013276_SNP [dm3] 2R_21125771_SNP [dm6]	C	T	3.924e^-4	0.777	SYNONYMOUS_CODING CG4050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17397368	2R_17397368_SNP [dm3] 2R_21509863_SNP [dm6]	A	T	3.924e^-4	0.777	INTRON MESK2
2R	20195193	2R_20195193_SNP [dm3] 2R_24307670_SNP [dm6]	A	G	3.929e^-4	0.777	INTRON betaTub60D	regulatory region REDfly_CRMs
X	10232970	X_10232970_SNP [dm3] X_10338937_SNP [dm6]	C	G	3.931e^-4	0.777	INTRON CG43740
3L	9983723	3L_9983723_SNP [dm3] 3L_9990623_SNP [dm6]	C	T	3.933e^-4	0.777	INTRON dpr6
3R	22079247	3R_22079247_SNP [dm3] 3R_26253525_SNP [dm6]	T	A	3.936e^-4	0.777	DOWNSTREAM CR42745 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	4271335	X_4271335_DEL [dm3] X_4377302_DEL [dm6]	TGTTCTTAAAA...	C	3.940e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22137645	3R_22137645_SNP [dm3] 3R_26311923_SNP [dm6]	T	C	3.942e^-4	0.777	INTERGENIC
3R	13495314	3R_13495314_SNP [dm3] 3R_17669592_SNP [dm6]	A	G	3.950e^-4	0.777	SYNONYMOUS_CODING CG7523 UTR_3_PRIME CG14322 DOWNSTREAM CG14322
3R	18387337	3R_18387337_SNP [dm3] 3R_22561615_SNP [dm6]	G	A	3.953e^-4	0.777	INTRON CG5278
3R	10146996	3R_10146996_SNP [dm3] 3R_14321274_SNP [dm6]	C	A	3.953e^-4	0.777	UTR_3_PRIME Afti DOWNSTREAM Afti & 1 other
2R	6358925	2R_6358925_SNP [dm3] 2R_10471420_SNP [dm6]	T	G	3.956e^-4	0.777	INTRON whd	TF binding site mE1_TFBS_inv
2L	4902398	2L_4902398_SNP [dm3] 2L_4902398_SNP [dm6]	G	C	3.961e^-4	0.777	SPLICE_SITE_REGION CG3036 INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14496877	2R_14496877_SNP [dm3] 2R_18609372_SNP [dm6]	T	C	3.962e^-4	0.777	INTRON GEFmeso	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6197217	3R_6197217_SNP [dm3] 3R_10371495_SNP [dm6]	T	C	3.968e^-4	0.777	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	7958597	2R_7958597_DEL [dm3] 2R_12071092_DEL [dm6]	CC	C	3.982e^-4	0.777	INTRON CG8888
2L	8941482	2L_8941482_SNP [dm3] 2L_8941482_SNP [dm6]	A	T	3.985e^-4	0.777	SYNONYMOUS_CODING CG9510 DOWNSTREAM CG9515	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22506925	3R_22506925_SNP [dm3] 3R_26681203_SNP [dm6]	G	T	3.992e^-4	0.777	INTRON beat-VII
3L	11570015	3L_11570015_DEL [dm3] 3L_11576915_DEL [dm6]	TGAGT	T	3.993e^-4	0.777	UTR_5_PRIME CG33489 UPSTREAM CG33489 DOWNSTREAM CG33271
3R	22462315	3R_22462315_SNP [dm3] 3R_26636593_SNP [dm6]	C	G	3.995e^-4	0.777	UPSTREAM TwdlS DOWNSTREAM TwdlR INTERGENIC
3L	6694366	3L_6694366_SNP [dm3] 3L_6701266_SNP [dm6]	G	A	3.999e^-4	0.777	INTRON SP1173
3R	15636458	3R_15636458_SNP [dm3] 3R_19810736_SNP [dm6]	A	C	4.000e^-4	0.777	INTRON bnl
3R	21574370	3R_21574370_SNP [dm3] 3R_25748648_SNP [dm6]	G	A	4.005e^-4	0.777	INTRON LpR1
2L	3262350	2L_3262350_SNP [dm3] 2L_3262350_SNP [dm6]	C	T	4.007e^-4	0.777	UPSTREAM CR45338 INTERGENIC
2L	5066314	2L_5066314_SNP [dm3] 2L_5066314_SNP [dm6]	A	C	4.010e^-4	0.777	INTRON qtc
3R	26369350	3R_26369350_SNP [dm3] 3R_30543628_SNP [dm6]	T	C	4.012e^-4	0.777	INTRON tmod
2L	11576639	2L_11576639_SNP [dm3] 2L_11576639_SNP [dm6]	T	A	4.014e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14607525	X_14607525_SNP [dm3] X_14713492_SNP [dm6]	A	C	4.019e^-4	0.777	INTRON NetB
3R	18520163	3R_18520163_SNP [dm3] 3R_22694441_SNP [dm6]	C	T	4.019e^-4	0.777	SYNONYMOUS_CODING Nup133 UPSTREAM cd	TF binding site mE1_TFBS_cad
3L	13416447	3L_13416447_SNP [dm3] 3L_13423347_SNP [dm6]	T	C	4.022e^-4	0.777	UTR_3_PRIME CG33263
2L	13924597	2L_13924597_SNP [dm3] 2L_13924597_SNP [dm6]	T	C	4.025e^-4	0.777	INTRON Ance-3
3R	9918446	3R_9918446_SNP [dm3] 3R_14092724_SNP [dm6]	G	C	4.032e^-4	0.777	NON_SYNONYMOUS_CODING CCHa1 DOWNSTREAM Npc2b	TF binding site mE1_TFBS_HSA
2L	14587077	2L_14587077_SNP [dm3] 2L_14587077_SNP [dm6]	T	G	4.039e^-4	0.777	DOWNSTREAM CG42680 INTERGENIC	TF binding site mE1_TFBS_cad
X	2796299	X_2796299_SNP [dm3] X_2902266_SNP [dm6]	T	C	4.043e^-4	0.777	INTRON kirre
3L	8029467	3L_8029467_SNP [dm3] 3L_8036367_SNP [dm6]	T	G	4.045e^-4	0.777	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	19127703	3L_19127703_SNP [dm3] 3L_19134603_SNP [dm6]	G	A	4.057e^-4	0.777	INTRON CG14082
3L	8029473	3L_8029473_SNP [dm3] 3L_8036373_SNP [dm6]	A	G	4.059e^-4	0.777	INTRON nmo	TF binding site BDTNP1_TFBS_twi
2L	2540749	2L_2540749_SNP [dm3] 2L_2540749_SNP [dm6]	A	G	4.065e^-4	0.777	INTERGENIC
3R	20674100	3R_20674100_SNP [dm3] 3R_24848378_SNP [dm6]	C	T	4.068e^-4	0.777	SYNONYMOUS_CODING Esp	TF binding site mE1_TFBS_chinmo
3R	26523042	3R_26523042_SNP [dm3] 3R_30697320_SNP [dm6]	A	T	4.073e^-4	0.777	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	1673914	3L_1673914_SNP [dm3] 3L_1673914_SNP [dm6]	C	T	4.076e^-4	0.777	UPSTREAM CG7991 INTERGENIC
3R	21535127	3R_21535127_SNP [dm3] 3R_25709405_SNP [dm6]	G	A	4.079e^-4	0.777	SYNONYMOUS_CODING LpR2 INTRON LpR2
2L	10723076	2L_10723076_SNP [dm3] 2L_10723076_SNP [dm6]	T	A	4.087e^-4	0.777	INTERGENIC
X	3716531	X_3716531_SNP [dm3] X_3822498_SNP [dm6]	G	C	4.097e^-4	0.777	INTRON ec	TF binding site mE1_TFBS_HSA
3R	6782516	3R_6782516_SNP [dm3] 3R_10956794_SNP [dm6]	A	C	4.104e^-4	0.777	INTERGENIC
2L	8496392	2L_8496392_SNP [dm3] 2L_8496392_SNP [dm6]	G	T	4.105e^-4	0.777	UPSTREAM Bace INTRON Dh31	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16101933	3R_16101933_SNP [dm3] 3R_20276211_SNP [dm6]	G	A	4.105e^-4	0.777	INTRON cic	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14099071	X_14099071_DEL [dm3] X_14205038_DEL [dm6]	TTACTAT	T	4.106e^-4	0.777	UTR_3_PRIME l_1_G0469 DOWNSTREAM l_1_G0469 INTRON l_1_G0007
3L	14083889	3L_14083889_SNP [dm3] 3L_14090789_SNP [dm6]	A	G	4.107e^-4	0.777	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	7029791	3R_7029791_DEL [dm3] 3R_11204069_DEL [dm6]	AAAACTGA	C	4.112e^-4	0.777	INTRON cu
3R	22124714	3R_22124714_SNP [dm3] 3R_26298992_SNP [dm6]	A	T	4.121e^-4	0.777	INTERGENIC
3R	10109609	3R_10109609_SNP [dm3] 3R_14283887_SNP [dm6]	T	A	4.123e^-4	0.777	INTRON trx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	22277059	3L_22277059_SNP [dm3] 3L_22283959_SNP [dm6]	G	A	4.136e^-4	0.777	UTR_3_PRIME srpk79D DOWNSTREAM Hem & 1 other
3L	5654353	3L_5654353_SNP [dm3] 3L_5661253_SNP [dm6]	T	C	4.140e^-4	0.777	INTRON sif & 1 other	TF binding site mE1_TFBS_sens
3R	4226287	3R_4226287_SNP [dm3] 3R_8400565_SNP [dm6]	T	C	4.142e^-4	0.777	INTRON CG45263
3L	5654339	3L_5654339_SNP [dm3] 3L_5661239_SNP [dm6]	T	A	4.144e^-4	0.777	INTRON sif & 1 other	TF binding site mE1_TFBS_sens
3L	14208051	3L_14208051_SNP [dm3] 3L_14214951_SNP [dm6]	A	T	4.144e^-4	0.777	INTRON nuf	TF binding site mE1_TFBS_inv
3L	15007198	3L_15007198_SNP [dm3] 3L_15014098_SNP [dm6]	A	T	4.147e^-4	0.777	UPSTREAM Reck DOWNSTREAM Sytbeta INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	10832112	3R_10832112_SNP [dm3] 3R_15006390_SNP [dm6]	A	C	4.148e^-4	0.777	INTERGENIC
3L	6270238	3L_6270238_SNP [dm3] 3L_6277138_SNP [dm6]	A	T	4.151e^-4	0.777	DOWNSTREAM CG43168 INTERGENIC
3R	19532163	3R_19532163_SNP [dm3] 3R_23706441_SNP [dm6]	C	T	4.153e^-4	0.777	SYNONYMOUS_CODING CG31414 EXON CR44052

By genomic position
Variant impact
Gene name

Food_Intake phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results