DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.060e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.08109

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2L_t	5.0195	0.0813
In_2R_NS	7.0907	0.0289

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2092 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	1085642	3L_1085642_SNP [dm3] 3L_1085642_SNP [dm6]	T	A	3.144e^-8	0.059	INTRON bab1
3R	21217519	3R_21217519_SNP [dm3] 3R_25391797_SNP [dm6]	T	C	2.173e^-7	0.103	INTRON Fur1
X	9121129	X_9121129_SNP [dm3] X_9227096_SNP [dm6]	C	T	2.196e^-7	0.103	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
3L	1084990	3L_1084990_SNP [dm3] 3L_1084990_SNP [dm6]	C	G	2.203e^-7	0.103	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	1085137	3L_1085137_SNP [dm3] 3L_1085137_SNP [dm6]	G	T	4.669e^-7	0.159	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27133512	3R_27133512_SNP [dm3] 3R_31307790_SNP [dm6]	C	G	5.092e^-7	0.159	INTERGENIC
3L	1085230	3L_1085230_SNP [dm3] 3L_1085230_SNP [dm6]	T	G	8.418e^-7	0.183	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	1244833	3L_1244833_SNP [dm3] 3L_1244833_SNP [dm6]	G	A	8.598e^-7	0.183	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1244830	3L_1244830_SNP [dm3] 3L_1244830_SNP [dm6]	G	A	8.955e^-7	0.183	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1242674	3L_1242674_SNP [dm3] 3L_1242674_SNP [dm6]	T	A	1.011e^-6	0.183	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1122911	3L_1122911_SNP [dm3] 3L_1122911_SNP [dm6]	G	T	1.076e^-6	0.183	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1244839	3L_1244839_SNP [dm3] 3L_1244839_SNP [dm6]	G	A	1.657e^-6	0.241	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1243096	3L_1243096_SNP [dm3] 3L_1243096_SNP [dm6]	A	C	1.671e^-6	0.241	NON_SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
3L	1271857	3L_1271857_SNP [dm3] 3L_1271857_SNP [dm6]	G	T	1.880e^-6	0.252	INTRON CG9134
X	9121094	X_9121094_SNP [dm3] X_9227061_SNP [dm6]	T	C	2.367e^-6	0.296	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
3R	25420537	3R_25420537_SNP [dm3] 3R_29594815_SNP [dm6]	A	G	2.960e^-6	0.347	INTRON alph
3L	1230773	3L_1230773_SNP [dm3] 3L_1230773_SNP [dm6]	C	A	3.673e^-6	0.381	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1090733	3L_1090733_SNP [dm3] 3L_1090733_SNP [dm6]	T	A	3.928e^-6	0.381	INTRON bab1	regulatory region REDfly_CRMs
3L	1243072	3L_1243072_SNP [dm3] 3L_1243072_SNP [dm6]	C	T	3.992e^-6	0.381	NON_SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
3L	1271873	3L_1271873_SNP [dm3] 3L_1271873_SNP [dm6]	T	C	4.154e^-6	0.381	INTRON CG9134
3L	1245121	3L_1245121_SNP [dm3] 3L_1245121_SNP [dm6]	T	A	4.269e^-6	0.381	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
3L	1242701	3L_1242701_SNP [dm3] 3L_1242701_SNP [dm6]	A	T	4.632e^-6	0.395	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9496975	2L_9496975_SNP [dm3] 2L_9496975_SNP [dm6]	T	C	5.162e^-6	0.421	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	27143441	3R_27143441_SNP [dm3] 3R_31317719_SNP [dm6]	G	A	6.209e^-6	0.467	INTRON CG34347
3R	27138232	3R_27138232_SNP [dm3] 3R_31312510_SNP [dm6]	G	A	6.463e^-6	0.467	INTRON CG34347
X	15535738	X_15535738_SNP [dm3] X_15641705_SNP [dm6]	T	C	6.479e^-6	0.467	EXON CR44893
X	9121177	X_9121177_SNP [dm3] X_9227144_SNP [dm6]	C	T	7.165e^-6	0.471	UTR_5_PRIME Gr8a DOWNSTREAM CG15370
3R	27135131	3R_27135131_SNP [dm3] 3R_31309409_SNP [dm6]	C	A	7.269e^-6	0.471	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26935103	3R_26935103_SNP [dm3] 3R_31109381_SNP [dm6]	C	T	7.275e^-6	0.471	UPSTREAM CG11318 INTERGENIC
3L	1904606	3L_1904606_SNP [dm3] 3L_1904606_SNP [dm6]	A	T	7.896e^-6	0.478	INTRON CG1887	TF binding site mE1_TFBS_chinmo
3L	1267191	3L_1267191_SNP [dm3] 3L_1267191_SNP [dm6]	G	A	8.032e^-6	0.478	INTRON CG9134
3L	1257108	3L_1257108_SNP [dm3] 3L_1257108_SNP [dm6]	G	C	8.148e^-6	0.478	UTR_5_PRIME CG9134
3R	15500551	3R_15500551_SNP [dm3] 3R_19674829_SNP [dm6]	A	G	9.184e^-6	0.522	INTRON Naam
3R	17063120	3R_17063120_SNP [dm3] 3R_21237398_SNP [dm6]	T	C	9.882e^-6	0.522	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
2L	22075281	2L_22075281_SNP [dm3] 2L_22075281_SNP [dm6]	A	T	9.979e^-6	0.522	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15535734	X_15535734_SNP [dm3] X_15641701_SNP [dm6]	T	G	1.022e^-5	0.522	EXON CR44893
3L	1090783	3L_1090783_SNP [dm3] 3L_1090783_SNP [dm6]	T	A	1.050e^-5	0.522	INTRON bab1	regulatory region REDfly_CRMs
2R	15490188	2R_15490188_SNP [dm3] 2R_19602683_SNP [dm6]	G	A	1.058e^-5	0.522	UPSTREAM CR44473 INTRON sm
2R	19687195	2R_19687195_SNP [dm3] 2R_23799672_SNP [dm6]	C	G	1.120e^-5	0.53	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	1086181	3L_1086181_SNP [dm3] 3L_1086181_SNP [dm6]	G	A	1.194e^-5	0.53	INTRON bab1
3R	14358995	3R_14358995_SNP [dm3] 3R_18533273_SNP [dm6]	A	T	1.234e^-5	0.53	INTRON fru
3L	1268391	3L_1268391_SNP [dm3] 3L_1268391_SNP [dm6]	A	G	1.305e^-5	0.53	INTRON CG9134
3L	1092106	3L_1092106_SNP [dm3] 3L_1092106_SNP [dm6]	C	T	1.343e^-5	0.53	INTRON bab1	regulatory region REDfly_CRMs
3L	1085272	3L_1085272_SNP [dm3] 3L_1085272_SNP [dm6]	C	T	1.357e^-5	0.53	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2537181	3L_2537181_SNP [dm3] 3L_2537181_SNP [dm6]	T	C	1.365e^-5	0.53	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14249623	3L_14249623_SNP [dm3] 3L_14256523_SNP [dm6]	T	C	1.395e^-5	0.53	INTERGENIC
3L	1239438	3L_1239438_SNP [dm3] 3L_1239438_SNP [dm6]	G	C	1.436e^-5	0.53	INTRON CG9194	TF binding site mE1_TFBS_cad
3R	21217489	3R_21217489_SNP [dm3] 3R_25391767_SNP [dm6]	A	C	1.466e^-5	0.53	INTRON Fur1
3L	1268803	3L_1268803_SNP [dm3] 3L_1268803_SNP [dm6]	A	T	1.468e^-5	0.53	INTRON CG9134
2L	9497507	2L_9497507_SNP [dm3] 2L_9497507_SNP [dm6]	T	C	1.475e^-5	0.53	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20283209	3R_20283209_SNP [dm3] 3R_24457487_SNP [dm6]	T	G	1.482e^-5	0.53	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	1191631	3L_1191631_SNP [dm3] 3L_1191631_SNP [dm6]	T	C	1.495e^-5	0.53	INTRON Trh	TF binding site mE1_TFBS_cad
3L	1193607	3L_1193607_SNP [dm3] 3L_1193607_SNP [dm6]	C	G	1.555e^-5	0.53	UPSTREAM Trh INTERGENIC
3R	21217629	3R_21217629_SNP [dm3] 3R_25391907_SNP [dm6]	T	C	1.580e^-5	0.53	INTRON Fur1
3L	2324713	3L_2324713_SNP [dm3] 3L_2324713_SNP [dm6]	T	C	1.648e^-5	0.53	INTRON MsR1
3R	20283190	3R_20283190_SNP [dm3] 3R_24457468_SNP [dm6]	G	T	1.700e^-5	0.53	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	27143473	3R_27143473_SNP [dm3] 3R_31317751_SNP [dm6]	T	C	1.711e^-5	0.53	INTRON CG34347
3L	1085552	3L_1085552_SNP [dm3] 3L_1085552_SNP [dm6]	G	A	1.746e^-5	0.53	INTRON bab1
3R	27135120	3R_27135120_SNP [dm3] 3R_31309398_SNP [dm6]	C	T	1.772e^-5	0.53	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1242730	3L_1242730_SNP [dm3] 3L_1242730_SNP [dm6]	C	G	1.793e^-5	0.53	NON_SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1268390	3L_1268390_SNP [dm3] 3L_1268390_SNP [dm6]	G	A	1.798e^-5	0.53	INTRON CG9134
3R	25416511	3R_25416511_SNP [dm3] 3R_29590789_SNP [dm6]	G	T	1.809e^-5	0.53	NON_SYNONYMOUS_CODING CG31041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	21542838	3R_21542838_SNP [dm3] 3R_25717116_SNP [dm6]	G	A	1.809e^-5	0.53	INTRON LpR2
3L	1271833	3L_1271833_SNP [dm3] 3L_1271833_SNP [dm6]	A	C	1.842e^-5	0.53	INTRON CG9134
2L	1956864	2L_1956864_SNP [dm3] 2L_1956864_SNP [dm6]	G	A	1.859e^-5	0.53	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	20628607	2L_20628607_SNP [dm3] 2L_20628607_SNP [dm6]	C	A	1.866e^-5	0.53	INTERGENIC
3L	1085809	3L_1085809_SNP [dm3] 3L_1085809_SNP [dm6]	T	C	1.972e^-5	0.551	INTRON bab1
3L	1250335	3L_1250335_SNP [dm3] 3L_1250335_SNP [dm6]	G	T	1.996e^-5	0.551	UTR_3_PRIME Sac1 UPSTREAM CG9129
3L	1266443	3L_1266443_SNP [dm3] 3L_1266443_SNP [dm6]	C	G	2.041e^-5	0.555	INTRON CG9134
3L	1085687	3L_1085687_SNP [dm3] 3L_1085687_SNP [dm6]	G	A	2.121e^-5	0.566	INTRON bab1
3L	1267306	3L_1267306_SNP [dm3] 3L_1267306_SNP [dm6]	T	C	2.177e^-5	0.566	INTRON CG9134
2R	10700370	2R_10700370_SNP [dm3] 2R_14812865_SNP [dm6]	G	C	2.180e^-5	0.566	INTERGENIC	regulatory region REDfly_CRMs
2R	19687188	2R_19687188_SNP [dm3] 2R_23799665_SNP [dm6]	A	G	2.202e^-5	0.566	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	17057231	3R_17057231_SNP [dm3] 3R_21231509_SNP [dm6]	A	G	2.300e^-5	0.573	SYNONYMOUS_CODING e	TF binding site mE1_TFBS_cad
3L	1244227	3L_1244227_SNP [dm3] 3L_1244227_SNP [dm6]	A	G	2.326e^-5	0.573	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
2R	9897501	2R_9897501_DEL [dm3] 2R_14009996_DEL [dm6]	CC	G	2.336e^-5	0.573	INTRON mam
3R	25156878	3R_25156878_SNP [dm3] 3R_29331156_SNP [dm6]	C	G	2.354e^-5	0.573	INTERGENIC
3L	1268394	3L_1268394_DEL [dm3] 3L_1268394_DEL [dm6]	GCCA	G	2.543e^-5	0.605	INTRON CG9134
3L	1268399	3L_1268399_SNP [dm3] 3L_1268399_SNP [dm6]	A	T	2.609e^-5	0.605	INTRON CG9134
3L	2537183	3L_2537183_SNP [dm3] 3L_2537183_SNP [dm6]	G	A	2.612e^-5	0.605	UPSTREAM Spn INTRON Spn	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	3601548	2R_3601548_SNP [dm3] 2R_7714043_SNP [dm6]	T	G	2.657e^-5	0.605	NON_SYNONYMOUS_CODING CG1942 UPSTREAM CG1946	TF binding site mE1_TFBS_cnc
2L	16369024	2L_16369024_SNP [dm3] 2L_16369024_SNP [dm6]	A	T	2.684e^-5	0.605	INTERGENIC
3L	1265993	3L_1265993_SNP [dm3] 3L_1265993_SNP [dm6]	T	A	2.692e^-5	0.605	UTR_5_PRIME CG9134 INTRON CG9134	TF binding site mE1_TFBS_Trl
3R	27579885	3R_27579885_DEL [dm3] 3R_31754163_DEL [dm6]	GTGAAATTCATCTAAG...	G	2.712e^-5	0.605	UPSTREAM mir-1014 INTRON salt
2R	10700329	2R_10700329_SNP [dm3] 2R_14812824_SNP [dm6]	C	G	2.743e^-5	0.605	INTERGENIC	regulatory region REDfly_CRMs
3L	1086802	3L_1086802_INS [dm3] 3L_1086802_INS [dm6]	TC	CTAT	2.883e^-5	0.629	INTRON bab1
3R	26391868	3R_26391868_SNP [dm3] 3R_30566146_SNP [dm6]	G	A	2.972e^-5	0.641	INTRON tmod
3L	1086767	3L_1086767_SNP [dm3] 3L_1086767_SNP [dm6]	A	G	3.170e^-5	0.676	INTRON bab1
3L	12152302	3L_12152302_SNP [dm3] 3L_12159202_SNP [dm6]	G	T	3.290e^-5	0.688	SYNONYMOUS_CODING CG9760
3R	25066836	3R_25066836_SNP [dm3] 3R_29241114_SNP [dm6]	C	T	3.319e^-5	0.688	SYNONYMOUS_CODING CG31445 UPSTREAM CG31427	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1268172	3L_1268172_SNP [dm3] 3L_1268172_SNP [dm6]	T	C	3.336e^-5	0.688	INTRON CG9134
3R	16494797	3R_16494797_SNP [dm3] 3R_20669075_SNP [dm6]	C	T	3.485e^-5	0.71	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
3L	1285196	3L_1285196_SNP [dm3] 3L_1285196_SNP [dm6]	G	T	3.546e^-5	0.71	INTRON CG32333
3R	13127277	3R_13127277_SNP [dm3] 3R_17301555_SNP [dm6]	T	A	3.678e^-5	0.71	INTERGENIC
3R	13127297	3R_13127297_SNP [dm3] 3R_17301575_SNP [dm6]	A	T	3.678e^-5	0.71	INTERGENIC
3L	1254360	3L_1254360_SNP [dm3] 3L_1254360_SNP [dm6]	C	T	3.687e^-5	0.71	UTR_5_PRIME CG9133 UTR_3_PRIME CG9130 INTRON CG9130 & 1 other	TF binding site mE1_TFBS_chinmo
2L	6050212	2L_6050212_SNP [dm3] 2L_6050212_SNP [dm6]	A	G	3.702e^-5	0.71	NON_SYNONYMOUS_CODING CG12393 UPSTREAM CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	20304801	3R_20304801_DEL [dm3] 3R_24479079_DEL [dm6]	AA	A	3.746e^-5	0.71	INTERGENIC
2R	10700307	2R_10700307_SNP [dm3] 2R_14812802_SNP [dm6]	T	C	3.748e^-5	0.71	INTERGENIC	regulatory region REDfly_CRMs
2L	1762040	2L_1762040_SNP [dm3] 2L_1762040_SNP [dm6]	T	A	3.827e^-5	0.717	INTERGENIC
2R	9404826	2R_9404826_SNP [dm3] 2R_13517321_SNP [dm6]	A	G	3.873e^-5	0.717	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
2R	10700263	2R_10700263_SNP [dm3] 2R_14812758_SNP [dm6]	A	G	3.901e^-5	0.717	INTERGENIC	regulatory region REDfly_CRMs
3R	26809987	3R_26809987_SNP [dm3] 3R_30984265_SNP [dm6]	G	T	4.051e^-5	0.732	INTRON 5-HT7
3L	1236413	3L_1236413_SNP [dm3] 3L_1236413_SNP [dm6]	C	G	4.060e^-5	0.732	DOWNSTREAM CG33966 & 2 others INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7831461	3L_7831461_SNP [dm3] 3L_7838361_SNP [dm6]	T	C	4.240e^-5	0.732	INTRON Pdp1	regulatory region REDfly_CRMs
3L	22542043	3L_22542043_SNP [dm3] 3L_22548943_SNP [dm6]	T	A	4.241e^-5	0.732	SYNONYMOUS_CODING CG11404
3R	27573393	3R_27573393_SNP [dm3] 3R_31747671_SNP [dm6]	C	T	4.266e^-5	0.732	UTR_5_PRIME CG1910 UPSTREAM CG1910 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	9020823	3L_9020823_SNP [dm3] 3L_9027723_SNP [dm6]	C	A	4.308e^-5	0.732	INTERGENIC
X	10770035	X_10770035_SNP [dm3] X_10876002_SNP [dm6]	T	C	4.316e^-5	0.732	SPLICE_SITE_REGION CG1637 INTRON CG1637
3L	1268194	3L_1268194_SNP [dm3] 3L_1268194_SNP [dm6]	T	G	4.346e^-5	0.732	INTRON CG9134
3R	21455031	3R_21455031_SNP [dm3] 3R_25629309_SNP [dm6]	T	A	4.363e^-5	0.732	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	18340948	2R_18340948_SNP [dm3] 2R_22453443_SNP [dm6]	T	C	4.374e^-5	0.732	INTERGENIC
3R	22121068	3R_22121068_SNP [dm3] 3R_26295346_SNP [dm6]	T	C	4.481e^-5	0.744	INTERGENIC
3R	20283205	3R_20283205_SNP [dm3] 3R_24457483_SNP [dm6]	G	A	4.543e^-5	0.747	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	12076960	2R_12076960_SNP [dm3] 2R_16189455_SNP [dm6]	A	C	4.618e^-5	0.751	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1267363	3L_1267363_SNP [dm3] 3L_1267363_SNP [dm6]	T	A	4.706e^-5	0.751	INTRON CG9134
3R	25138538	3R_25138538_SNP [dm3] 3R_29312816_SNP [dm6]	T	C	4.712e^-5	0.751	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	1238561	3L_1238561_SNP [dm3] 3L_1238561_SNP [dm6]	A	G	4.755e^-5	0.751	UPSTREAM CG9192 INTRON CG9194	TF binding site mE1_TFBS_cnc
2R	9895770	2R_9895770_SNP [dm3] 2R_14008265_SNP [dm6]	C	G	4.765e^-5	0.751	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	1609939	3L_1609939_SNP [dm3] 3L_1609939_SNP [dm6]	A	T	4.946e^-5	0.755	DOWNSTREAM CG12105 INTRON CG33791 & 1 other
3L	1086705	3L_1086705_SNP [dm3] 3L_1086705_SNP [dm6]	T	C	5.043e^-5	0.755	INTRON bab1
3L	17597624	3L_17597624_SNP [dm3] 3L_17604524_SNP [dm6]	G	C	5.067e^-5	0.755	INTRON Eip74EF
3L	1244626	3L_1244626_SNP [dm3] 3L_1244626_SNP [dm6]	C	T	5.108e^-5	0.755	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10250710	3R_10250710_SNP [dm3] 3R_14424988_SNP [dm6]	T	C	5.151e^-5	0.755	INTRON cv-c
2L	7955740	2L_7955740_SNP [dm3] 2L_7955740_SNP [dm6]	A	G	5.187e^-5	0.755	INTRON Snoo	TF binding site mE1_TFBS_inv
3R	19087888	3R_19087888_SNP [dm3] 3R_23262166_SNP [dm6]	T	A	5.199e^-5	0.755	UTR_3_PRIME orb
3R	18587853	3R_18587853_SNP [dm3] 3R_22762131_SNP [dm6]	G	T	5.202e^-5	0.755	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
3R	16259376	3R_16259376_DEL [dm3] 3R_20433654_DEL [dm6]	AAA	A	5.321e^-5	0.755	INTRON Gfrl
3R	5041107	3R_5041107_SNP [dm3] 3R_9215385_SNP [dm6]	C	A	5.391e^-5	0.755	INTRON pum	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14554760	3L_14554760_DEL [dm3] 3L_14561660_DEL [dm6]	TT	T	5.412e^-5	0.755	UPSTREAM Lk DOWNSTREAM CR44843 INTRON CG34039
3L	1242884	3L_1242884_SNP [dm3] 3L_1242884_SNP [dm6]	A	T	5.566e^-5	0.755	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_sens
2R	10700322	2R_10700322_SNP [dm3] 2R_14812817_SNP [dm6]	C	A	5.587e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs
3L	1263887	3L_1263887_SNP [dm3] 3L_1263887_SNP [dm6]	T	C	5.615e^-5	0.755	INTRON CG9134
3L	1266407	3L_1266407_SNP [dm3] 3L_1266407_SNP [dm6]	A	C	5.623e^-5	0.755	INTRON CG9134
3R	20899870	3R_20899870_SNP [dm3] 3R_25074148_SNP [dm6]	T	C	5.715e^-5	0.755	UPSTREAM CG11920 INTRON CG9996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1267271	3L_1267271_SNP [dm3] 3L_1267271_SNP [dm6]	G	T	5.729e^-5	0.755	INTRON CG9134
X	14787944	X_14787944_SNP [dm3] X_14893911_SNP [dm6]	G	T	5.736e^-5	0.755	INTRON Flo2 & 1 other
2L	1750726	2L_1750726_SNP [dm3] 2L_1750726_SNP [dm6]	G	A	5.742e^-5	0.755	UTR_3_PRIME CG17712 DOWNSTREAM CG17646	TF binding site mE1_TFBS_cad
3R	18413268	3R_18413268_SNP [dm3] 3R_22587546_SNP [dm6]	C	T	5.754e^-5	0.755	UPSTREAM btn & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	1083133	3L_1083133_SNP [dm3] 3L_1083133_SNP [dm6]	T	G	5.767e^-5	0.755	INTRON bab1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1251883	3L_1251883_SNP [dm3] 3L_1251883_SNP [dm6]	G	T	5.816e^-5	0.755	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
3L	17283725	3L_17283725_SNP [dm3] 3L_17290625_SNP [dm6]	C	T	5.852e^-5	0.755	INTERGENIC
3R	12944329	3R_12944329_SNP [dm3] 3R_17118607_SNP [dm6]	T	C	5.920e^-5	0.755	INTRON cher	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	1256920	3L_1256920_SNP [dm3] 3L_1256920_SNP [dm6]	C	T	5.967e^-5	0.755	UTR_5_PRIME CG9134 DOWNSTREAM CG9130 & 1 other
3R	24795167	3R_24795167_SNP [dm3] 3R_28969445_SNP [dm6]	C	T	5.968e^-5	0.755	UTR_5_PRIME CG14521	TF binding site mE1_TFBS_chinmo
2R	3601535	2R_3601535_SNP [dm3] 2R_7714030_SNP [dm6]	A	G	5.981e^-5	0.755	SYNONYMOUS_CODING CG1942 UPSTREAM CG1946	TF binding site mE1_TFBS_cnc
3R	25156879	3R_25156879_SNP [dm3] 3R_29331157_SNP [dm6]	G	A	6.014e^-5	0.755	INTERGENIC
3L	17283734	3L_17283734_SNP [dm3] 3L_17290634_SNP [dm6]	A	C	6.017e^-5	0.755	INTERGENIC
3L	1237450	3L_1237450_SNP [dm3] 3L_1237450_SNP [dm6]	G	A	6.050e^-5	0.755	SYNONYMOUS_CODING CG9192 INTRON CG9194
2R	19880870	2R_19880870_SNP [dm3] 2R_23993347_SNP [dm6]	C	T	6.082e^-5	0.755	UPSTREAM mir-1009 INTRON CG3860
3L	1270669	3L_1270669_SNP [dm3] 3L_1270669_SNP [dm6]	C	T	6.125e^-5	0.755	INTRON CG9134
3L	6439795	3L_6439795_SNP [dm3] 3L_6446695_SNP [dm6]	A	G	6.151e^-5	0.755	INTRON CG42747
2R	5313884	2R_5313884_SNP [dm3] 2R_9426379_SNP [dm6]	T	C	6.204e^-5	0.755	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14962949	3L_14962949_SNP [dm3] 3L_14969849_SNP [dm6]	C	T	6.252e^-5	0.755	SYNONYMOUS_CODING Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26588474	3R_26588474_SNP [dm3] 3R_30762752_SNP [dm6]	A	C	6.271e^-5	0.755	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	20286319	3L_20286319_SNP [dm3] 3L_20293219_SNP [dm6]	C	T	6.333e^-5	0.755	INTRON gogo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	22197059	2L_22197059_SNP [dm3] 2L_22197059_SNP [dm6]	T	A	6.421e^-5	0.755	INTRON Ir40a
3L	6820226	3L_6820226_INS [dm3] 3L_6827126_INS [dm6]	C	TT	6.445e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13908771	2L_13908771_SNP [dm3] 2L_13908771_SNP [dm6]	A	C	6.461e^-5	0.755	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
2R	13804521	2R_13804521_SNP [dm3] 2R_17917016_SNP [dm6]	G	T	6.489e^-5	0.755	INTRON Elk
2L	3821986	2L_3821986_SNP [dm3] 2L_3821986_SNP [dm6]	G	A	6.548e^-5	0.755	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1086799	3L_1086799_SNP [dm3] 3L_1086799_SNP [dm6]	A	C	6.556e^-5	0.755	INTRON bab1
3R	27576325	3R_27576325_SNP [dm3] 3R_31750603_SNP [dm6]	T	C	6.560e^-5	0.755	INTRON CG1910	TF binding site mE1_TFBS_sens
2R	13804514	2R_13804514_SNP [dm3] 2R_17917009_SNP [dm6]	T	C	6.701e^-5	0.764	INTRON Elk
3R	14611595	3R_14611595_SNP [dm3] 3R_18785873_SNP [dm6]	C	G	6.732e^-5	0.764	INTRON CG7720
3L	1120350	3L_1120350_SNP [dm3] 3L_1120350_SNP [dm6]	C	T	6.758e^-5	0.764	INTERGENIC
3L	1248362	3L_1248362_SNP [dm3] 3L_1248362_SNP [dm6]	C	T	6.973e^-5	0.783	SYNONYMOUS_CODING Sac1 UPSTREAM Psf1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	25566160	3R_25566160_INS [dm3] 3R_29740438_INS [dm6]	A	AAATAGC	7.038e^-5	0.785	INTRON CG1969	TF binding site BDTNP1_TFBS_dl
3L	1264394	3L_1264394_SNP [dm3] 3L_1264394_SNP [dm6]	T	A	7.071e^-5	0.785	INTRON CG9134
2R	10700513	2R_10700513_SNP [dm3] 2R_14813008_SNP [dm6]	T	C	7.181e^-5	0.786	INTERGENIC	regulatory region REDfly_CRMs
3R	27699003	3R_27699003_INS [dm3] 3R_31873281_INS [dm6]	A	AA	7.209e^-5	0.786	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17790450	2R_17790450_SNP [dm3] 2R_21902945_SNP [dm6]	A	G	7.296e^-5	0.786	INTRON Fili
3R	25481313	3R_25481313_SNP [dm3] 3R_29655591_SNP [dm6]	A	T	7.376e^-5	0.786	INTRON Dop1R2
3R	18763519	3R_18763519_SNP [dm3] 3R_22937797_SNP [dm6]	C	A	7.380e^-5	0.786	INTRON klg
3R	27794322	3R_27794322_SNP [dm3] 3R_31968600_SNP [dm6]	G	C	7.385e^-5	0.786	INTRON heph
3L	5480915	3L_5480915_SNP [dm3] 3L_5487815_SNP [dm6]	C	G	7.388e^-5	0.786	INTERGENIC
X	15535744	X_15535744_DEL [dm3] X_15641711_DEL [dm6]	CC	C	7.465e^-5	0.786	EXON CR44893
3R	10250748	3R_10250748_SNP [dm3] 3R_14425026_SNP [dm6]	C	T	7.543e^-5	0.786	INTRON cv-c
3L	3885813	3L_3885813_SNP [dm3] 3L_3885813_SNP [dm6]	C	T	7.594e^-5	0.786	INTERGENIC
2L	5881343	2L_5881343_SNP [dm3] 2L_5881343_SNP [dm6]	A	G	7.624e^-5	0.786	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4992590	3L_4992590_SNP [dm3] 3L_4992590_SNP [dm6]	C	T	7.644e^-5	0.786	INTRON Con
2R	19880872	2R_19880872_SNP [dm3] 2R_23993349_SNP [dm6]	A	G	7.719e^-5	0.786	UPSTREAM mir-1009 INTRON CG3860
3L	1263567	3L_1263567_DEL [dm3] 3L_1263567_DEL [dm6]	AA	A	7.750e^-5	0.786	INTRON CG9134
2L	21914814	2L_21914814_SNP [dm3] 2L_21914814_SNP [dm6]	C	A	7.767e^-5	0.786	SYNONYMOUS_CODING CG31600
3L	1934947	3L_1934947_SNP [dm3] 3L_1934947_SNP [dm6]	A	T	7.775e^-5	0.786	NON_SYNONYMOUS_CODING CG5687
3R	26588482	3R_26588482_SNP [dm3] 3R_30762760_SNP [dm6]	T	A	7.810e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	27691037	3R_27691037_SNP [dm3] 3R_31865315_SNP [dm6]	C	T	7.858e^-5	0.786	SYNONYMOUS_CODING heph
3R	26391743	3R_26391743_SNP [dm3] 3R_30566021_SNP [dm6]	A	C	7.996e^-5	0.786	INTRON tmod
2L	7954157	2L_7954157_INS [dm3] 2L_7954157_INS [dm6]	T	TGGT	7.998e^-5	0.786	INTRON Snoo
3R	25139342	3R_25139342_SNP [dm3] 3R_29313620_SNP [dm6]	T	C	8.009e^-5	0.786	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	25420309	3R_25420309_SNP [dm3] 3R_29594587_SNP [dm6]	G	A	8.055e^-5	0.786	INTRON alph	TF binding site mE1_TFBS_cad
3L	4532731	3L_4532731_SNP [dm3] 3L_4532731_SNP [dm6]	C	T	8.079e^-5	0.786	UPSTREAM Tie & 1 other INTERGENIC
3L	3756087	3L_3756087_SNP [dm3] 3L_3756087_SNP [dm6]	C	T	8.208e^-5	0.786	UPSTREAM ppk27 INTRON CG32264	TF binding site mE1_TFBS_Trl
3R	27171901	3R_27171901_SNP [dm3] 3R_31346179_SNP [dm6]	A	G	8.225e^-5	0.786	INTRON CG34347
X	10303445	X_10303445_SNP [dm3] X_10409412_SNP [dm6]	A	G	8.324e^-5	0.786	UTR_3_PRIME flw DOWNSTREAM CG32683
3L	398147	3L_398147_SNP [dm3] 3L_398147_SNP [dm6]	A	T	8.325e^-5	0.786	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1092111	3L_1092111_SNP [dm3] 3L_1092111_SNP [dm6]	A	G	8.338e^-5	0.786	INTRON bab1	regulatory region REDfly_CRMs
3L	17409375	3L_17409375_SNP [dm3] 3L_17416275_SNP [dm6]	C	A	8.350e^-5	0.786	UPSTREAM blot INTRON blot	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	1745909	2R_1745909_SNP [dm3] 2R_5858404_SNP [dm6]	T	A	8.412e^-5	0.786	INTRON dpr12
2L	5895919	2L_5895919_DEL [dm3] 2L_5895919_DEL [dm6]	AACTGAC	A	8.451e^-5	0.786	INTERGENIC
3L	8871184	3L_8871184_SNP [dm3] 3L_8878084_SNP [dm6]	T	G	8.600e^-5	0.786	INTRON dally
3L	14249604	3L_14249604_SNP [dm3] 3L_14256504_SNP [dm6]	T	A	8.694e^-5	0.786	INTERGENIC
2L	12214054	2L_12214054_SNP [dm3] 2L_12214054_SNP [dm6]	G	T	8.800e^-5	0.786	INTRON aret
3L	3756095	3L_3756095_SNP [dm3] 3L_3756095_SNP [dm6]	G	A	8.837e^-5	0.786	UPSTREAM ppk27 INTRON CG32264	TF binding site mE1_TFBS_Trl
2R	10700355	2R_10700355_SNP [dm3] 2R_14812850_SNP [dm6]	A	G	8.857e^-5	0.786	INTERGENIC	regulatory region REDfly_CRMs
2L	1744384	2L_1744384_SNP [dm3] 2L_1744384_SNP [dm6]	T	C	8.951e^-5	0.786	INTRON CG17646
3L	5187370	3L_5187370_SNP [dm3] 3L_5194270_SNP [dm6]	G	T	9.075e^-5	0.786	INTRON shep
3R	5529274	3R_5529274_SNP [dm3] 3R_9703552_SNP [dm6]	A	G	9.081e^-5	0.786	INTRON Unc-115a	TF binding site BDTNP1_TFBS_da
2R	18943066	2R_18943066_SNP [dm3] 2R_23055543_SNP [dm6]	T	C	9.093e^-5	0.786	UTR_5_PRIME CG44252	TF binding site BDTNP1_TFBS_twi
3R	18538668	3R_18538668_SNP [dm3] 3R_22712946_SNP [dm6]	C	T	9.160e^-5	0.786	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_Kr
3L	8962218	3L_8962218_SNP [dm3] 3L_8969118_SNP [dm6]	A	T	9.244e^-5	0.786	DOWNSTREAM CG5021 INTRON CG5026	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	4736033	2L_4736033_SNP [dm3] 2L_4736033_SNP [dm6]	G	T	9.249e^-5	0.786	SYNONYMOUS_CODING CG15630
2R	20192901	2R_20192901_SNP [dm3] 2R_24305378_SNP [dm6]	A	T	9.260e^-5	0.786	UPSTREAM betaTub60D INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	1543958	3L_1543958_SNP [dm3] 3L_1543958_SNP [dm6]	C	T	9.291e^-5	0.786	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9114995	3L_9114995_SNP [dm3] 3L_9121895_SNP [dm6]	G	A	9.315e^-5	0.786	INTRON bol
2R	18792254	2R_18792254_SNP [dm3] 2R_22904731_SNP [dm6]	A	T	9.330e^-5	0.786	INTRON nahoda
2R	8783617	2R_8783617_SNP [dm3] 2R_12896112_SNP [dm6]	C	A	9.338e^-5	0.786	INTRON vg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6060043	3L_6060043_SNP [dm3] 3L_6066943_SNP [dm6]	A	G	9.351e^-5	0.786	INTRON CG42269
2R	19881667	2R_19881667_SNP [dm3] 2R_23994144_SNP [dm6]	C	A	9.380e^-5	0.786	INTRON CG3860
X	5007322	X_5007322_SNP [dm3] X_5113289_SNP [dm6]	A	G	9.389e^-5	0.786	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10157408	3L_10157408_SNP [dm3] 3L_10164308_SNP [dm6]	T	C	9.418e^-5	0.786	INTRON dpr10
2L	21902999	2L_21902999_SNP [dm3] 2L_21902999_SNP [dm6]	G	T	9.426e^-5	0.786	UTR_5_PRIME CG1421	TF binding site mE1_TFBS_HSA
2L	5300056	2L_5300056_DEL [dm3] 2L_5300056_DEL [dm6]	TAT	T	9.458e^-5	0.786	INTRON vri
3L	7755665	3L_7755665_SNP [dm3] 3L_7762565_SNP [dm6]	C	A	9.475e^-5	0.786	DOWNSTREAM Clk INTRON Hn
3L	10143392	3L_10143392_INS [dm3] 3L_10150292_INS [dm6]	G	GAG	9.517e^-5	0.786	INTRON dpr10
2L	16362586	2L_16362586_SNP [dm3] 2L_16362586_SNP [dm6]	A	G	9.534e^-5	0.786	INTERGENIC
3L	10154258	3L_10154258_SNP [dm3] 3L_10161158_SNP [dm6]	T	A	9.577e^-5	0.786	INTRON dpr10
2R	17790437	2R_17790437_DEL [dm3] 2R_21902932_DEL [dm6]	AC	A	9.739e^-5	0.786	INTRON Fili
2L	14452634	2L_14452634_SNP [dm3] 2L_14452634_SNP [dm6]	C	G	9.809e^-5	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8147199	3L_8147199_SNP [dm3] 3L_8154099_SNP [dm6]	A	G	9.877e^-5	0.786	DOWNSTREAM CG42445 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1084199	3L_1084199_SNP [dm3] 3L_1084199_SNP [dm6]	A	G	9.969e^-5	0.786	INTRON bab1	TF binding site BDTNP1_TFBS_dl
2L	4736234	2L_4736234_SNP [dm3] 2L_4736234_SNP [dm6]	A	G	1.004e^-4	0.786	SYNONYMOUS_CODING CG15630
2R	18826915	2R_18826915_SNP [dm3] 2R_22939392_SNP [dm6]	A	G	1.007e^-4	0.786	SYNONYMOUS_CODING CG3831 DOWNSTREAM CG9849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16267061	3R_16267061_SNP [dm3] 3R_20441339_SNP [dm6]	T	G	1.008e^-4	0.786	INTRON Gfrl
3L	433714	3L_433714_SNP [dm3] 3L_433714_SNP [dm6]	C	T	1.011e^-4	0.786	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3450898	2L_3450898_SNP [dm3] 2L_3450898_SNP [dm6]	G	T	1.013e^-4	0.786	SYNONYMOUS_CODING Snx1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1085650	3L_1085650_SNP [dm3] 3L_1085650_SNP [dm6]	C	T	1.013e^-4	0.786	INTRON bab1
2L	20595884	2L_20595884_SNP [dm3] 2L_20595884_SNP [dm6]	G	T	1.017e^-4	0.786	INTRON CR44909
3R	18413146	3R_18413146_SNP [dm3] 3R_22587424_SNP [dm6]	T	A	1.032e^-4	0.786	UPSTREAM btn & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25540749	3R_25540749_SNP [dm3] 3R_29715027_SNP [dm6]	A	G	1.033e^-4	0.786	DOWNSTREAM Dup99B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	3822234	2L_3822234_SNP [dm3] 2L_3822234_SNP [dm6]	A	C	1.033e^-4	0.786	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	15099952	2R_15099952_SNP [dm3] 2R_19212447_SNP [dm6]	T	A	1.035e^-4	0.786	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	859112	2L_859112_SNP [dm3] 2L_859112_SNP [dm6]	C	T	1.037e^-4	0.786	INTERGENIC
3R	27138165	3R_27138165_DEL [dm3] 3R_31312443_DEL [dm6]	AC	A	1.043e^-4	0.786	INTRON CG34347
3L	1235354	3L_1235354_SNP [dm3] 3L_1235354_SNP [dm6]	G	A	1.044e^-4	0.786	UTR_3_PRIME CG33966 UPSTREAM CR45747 & 1 other
3L	9592334	3L_9592334_SNP [dm3] 3L_9599234_SNP [dm6]	T	C	1.044e^-4	0.786	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad
2L	18542335	2L_18542335_SNP [dm3] 2L_18542335_SNP [dm6]	T	C	1.045e^-4	0.786	INTRON Pde11
2R	9895881	2R_9895881_SNP [dm3] 2R_14008376_SNP [dm6]	T	G	1.049e^-4	0.786	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
X	5855639	X_5855639_SNP [dm3] X_5961606_SNP [dm6]	T	A	1.058e^-4	0.786	SYNONYMOUS_CODING fs_1_M3
3R	26585175	3R_26585175_SNP [dm3] 3R_30759453_SNP [dm6]	G	A	1.058e^-4	0.786	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	26896360	3R_26896360_SNP [dm3] 3R_31070638_SNP [dm6]	A	G	1.064e^-4	0.786	INTRON Sox100B	TF binding site BDTNP1_TFBS_twi
3L	1245170	3L_1245170_SNP [dm3] 3L_1245170_SNP [dm6]	T	G	1.071e^-4	0.786	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
3R	26592657	3R_26592657_SNP [dm3] 3R_30766935_SNP [dm6]	G	A	1.072e^-4	0.786	INTRON zfh1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	18826906	2R_18826906_SNP [dm3] 2R_22939383_SNP [dm6]	G	A	1.074e^-4	0.786	SYNONYMOUS_CODING CG3831 DOWNSTREAM CG9849	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2150167	3L_2150167_DEL [dm3] 3L_2150167_DEL [dm6]	GAGTG	G	1.077e^-4	0.786	UTR_5_PRIME zormin
3L	1087885	3L_1087885_SNP [dm3] 3L_1087885_SNP [dm6]	A	G	1.080e^-4	0.786	INTRON bab1
3L	4769352	3L_4769352_SNP [dm3] 3L_4769352_SNP [dm6]	T	C	1.083e^-4	0.786	INTRON RhoGEF64C
3L	21331129	3L_21331129_SNP [dm3] 3L_21338029_SNP [dm6]	T	A	1.088e^-4	0.786	UTR_3_PRIME CG7324 & 1 other DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
3L	1101409	3L_1101409_SNP [dm3] 3L_1101409_SNP [dm6]	G	A	1.088e^-4	0.786	UPSTREAM bab1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	8880065	3L_8880065_SNP [dm3] 3L_8886965_SNP [dm6]	A	G	1.092e^-4	0.786	SYNONYMOUS_CODING dally
3L	9272833	3L_9272833_SNP [dm3] 3L_9279733_SNP [dm6]	A	T	1.098e^-4	0.786	INTRON GluRIB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	8878124	3L_8878124_SNP [dm3] 3L_8885024_SNP [dm6]	C	T	1.106e^-4	0.786	INTRON dally
2R	16688318	2R_16688318_SNP [dm3] 2R_20800813_SNP [dm6]	A	G	1.108e^-4	0.786	INTERGENIC
3L	1265337	3L_1265337_SNP [dm3] 3L_1265337_SNP [dm6]	T	A	1.114e^-4	0.786	UPSTREAM CG9134 INTRON CG9134	TF binding site mE1_TFBS_Trl
3R	17056362	3R_17056362_SNP [dm3] 3R_21230640_SNP [dm6]	A	T	1.116e^-4	0.786	INTRON e	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27138931	3R_27138931_SNP [dm3] 3R_31313209_SNP [dm6]	C	T	1.126e^-4	0.786	INTRON CG34347	TF binding site mE1_TFBS_inv
2R	16688646	2R_16688646_SNP [dm3] 2R_20801141_SNP [dm6]	G	C	1.126e^-4	0.786	INTERGENIC
3R	17040213	3R_17040213_SNP [dm3] 3R_21214491_SNP [dm6]	T	C	1.127e^-4	0.786	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	16513812	3R_16513812_DEL [dm3] 3R_20688090_DEL [dm6]	TGGTTTGCGT	T	1.127e^-4	0.786	DOWNSTREAM Oamb INTERGENIC
3L	22522243	3L_22522243_SNP [dm3] 3L_22529143_SNP [dm6]	G	T	1.143e^-4	0.791	INTERGENIC
2R	6437800	2R_6437800_SNP [dm3] 2R_10550295_SNP [dm6]	A	T	1.143e^-4	0.791	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	18750922	3R_18750922_SNP [dm3] 3R_22925200_SNP [dm6]	C	T	1.152e^-4	0.793	DOWNSTREAM CG6660 INTRON klg
3R	26585217	3R_26585217_SNP [dm3] 3R_30759495_SNP [dm6]	T	A	1.155e^-4	0.793	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3L	8144455	3L_8144455_SNP [dm3] 3L_8151355_SNP [dm6]	G	A	1.158e^-4	0.793	INTRON CG13676	TF binding site BDTNP1_TFBS_prd
2R	16688595	2R_16688595_SNP [dm3] 2R_20801090_SNP [dm6]	A	T	1.163e^-4	0.793	INTERGENIC
3L	1230626	3L_1230626_SNP [dm3] 3L_1230626_SNP [dm6]	A	T	1.171e^-4	0.796	SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7755680	3L_7755680_DEL [dm3] 3L_7762580_DEL [dm6]	TAA	T	1.188e^-4	0.805	DOWNSTREAM Clk INTRON Hn
3R	1208040	3R_1208040_SNP [dm3] 3R_5382318_SNP [dm6]	G	T	1.194e^-4	0.805	SYNONYMOUS_CODING kkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23204813	3R_23204813_SNP [dm3] 3R_27379091_SNP [dm6]	G	C	1.201e^-4	0.805	UTR_3_PRIME side INTRON side
3R	25855244	3R_25855244_SNP [dm3] 3R_30029522_SNP [dm6]	A	T	1.205e^-4	0.805	INTRON Axn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27132534	3R_27132534_SNP [dm3] 3R_31306812_SNP [dm6]	C	A	1.207e^-4	0.805	INTERGENIC
3L	1090129	3L_1090129_SNP [dm3] 3L_1090129_SNP [dm6]	A	G	1.210e^-4	0.805	INTRON bab1	regulatory region REDfly_CRMs
3R	24799201	3R_24799201_SNP [dm3] 3R_28973479_SNP [dm6]	T	C	1.227e^-4	0.813	DOWNSTREAM CR45669 INTERGENIC
2L	12553002	2L_12553002_SNP [dm3] 2L_12553002_SNP [dm6]	A	C	1.235e^-4	0.814	INTERGENIC
3R	24476268	3R_24476268_SNP [dm3] 3R_28650546_SNP [dm6]	G	A	1.241e^-4	0.814	UPSTREAM CG31050 INTERGENIC
2R	5343977	2R_5343977_SNP [dm3] 2R_9456472_SNP [dm6]	T	C	1.249e^-4	0.814	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3547646	3L_3547646_SNP [dm3] 3L_3547646_SNP [dm6]	C	T	1.249e^-4	0.814	INTRON Eip63E
3R	26391704	3R_26391704_SNP [dm3] 3R_30565982_SNP [dm6]	C	T	1.251e^-4	0.814	INTRON tmod
2R	9894941	2R_9894941_SNP [dm3] 2R_14007436_SNP [dm6]	A	T	1.262e^-4	0.814	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	21372701	3L_21372701_SNP [dm3] 3L_21379601_SNP [dm6]	G	C	1.270e^-4	0.814	INTERGENIC
3L	7755677	3L_7755677_SNP [dm3] 3L_7762577_SNP [dm6]	G	A	1.271e^-4	0.814	DOWNSTREAM Clk INTRON Hn
2R	18978370	2R_18978370_DEL [dm3] 2R_23090847_DEL [dm6]	ATCA	A	1.273e^-4	0.814	INTRON CG9876	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	27132385	3R_27132385_SNP [dm3] 3R_31306663_SNP [dm6]	G	A	1.277e^-4	0.814	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10660095	3L_10660095_SNP [dm3] 3L_10666995_SNP [dm6]	G	A	1.279e^-4	0.814	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	3745457	3L_3745457_INS [dm3] 3L_3745457_INS [dm6]	T	TGAAAGATTGGTTT...	1.293e^-4	0.814	INTRON CG32264
3L	1324287	3L_1324287_SNP [dm3] 3L_1324287_SNP [dm6]	G	A	1.295e^-4	0.814	UPSTREAM Myo61F & 1 other INTRON Myo61F
X	18257167	X_18257167_SNP [dm3] X_18363134_SNP [dm6]	A	G	1.298e^-4	0.814	DOWNSTREAM CG6106 INTERGENIC
3L	11176527	3L_11176527_DEL [dm3] 3L_11183427_DEL [dm6]	AA	A	1.299e^-4	0.814	INTRON GlcAT-P
3L	1270499	3L_1270499_SNP [dm3] 3L_1270499_SNP [dm6]	G	T	1.318e^-4	0.814	INTRON CG9134
3R	13480609	3R_13480609_SNP [dm3] 3R_17654887_SNP [dm6]	T	A	1.321e^-4	0.814	INTRON CG14322	TF binding site BDTNP1_TFBS_dl
2R	17163755	2R_17163755_SNP [dm3] 2R_21276250_SNP [dm6]	T	G	1.328e^-4	0.814	SYNONYMOUS_CODING Rgk3
3R	26415618	3R_26415618_SNP [dm3] 3R_30589896_SNP [dm6]	G	C	1.328e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5300350	2L_5300350_SNP [dm3] 2L_5300350_SNP [dm6]	T	G	1.330e^-4	0.814	INTRON vri
2R	4940569	2R_4940569_SNP [dm3] 2R_9053064_SNP [dm6]	T	C	1.332e^-4	0.814	INTRON CG13743	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	1263619	3L_1263619_SNP [dm3] 3L_1263619_SNP [dm6]	G	C	1.333e^-4	0.814	INTRON CG9134
X	17507522	X_17507522_SNP [dm3] X_17613489_SNP [dm6]	T	G	1.335e^-4	0.814	INTERGENIC
2L	12422920	2L_12422920_SNP [dm3] 2L_12422920_SNP [dm6]	A	G	1.336e^-4	0.814	INTRON vir-1	TF binding site BDTNP1_TFBS_z
3L	2866746	3L_2866746_SNP [dm3] 3L_2866746_SNP [dm6]	C	A	1.336e^-4	0.814	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26588401	3R_26588401_SNP [dm3] 3R_30762679_SNP [dm6]	G	T	1.342e^-4	0.814	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	1086784	3L_1086784_SNP [dm3] 3L_1086784_SNP [dm6]	G	A	1.345e^-4	0.814	INTRON bab1
2R	14092543	2R_14092543_SNP [dm3] 2R_18205038_SNP [dm6]	T	A	1.353e^-4	0.816	INTERGENIC
3L	1085403	3L_1085403_SNP [dm3] 3L_1085403_SNP [dm6]	G	T	1.366e^-4	0.816	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	24799200	3R_24799200_SNP [dm3] 3R_28973478_SNP [dm6]	C	T	1.367e^-4	0.816	DOWNSTREAM CR45669 INTERGENIC
3R	27128203	3R_27128203_SNP [dm3] 3R_31302481_SNP [dm6]	G	A	1.379e^-4	0.816	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
2R	3791585	2R_3791585_SNP [dm3] 2R_7904080_SNP [dm6]	G	C	1.379e^-4	0.816	INTRON CG30377
2L	1750551	2L_1750551_SNP [dm3] 2L_1750551_SNP [dm6]	A	G	1.384e^-4	0.816	UTR_3_PRIME CG17646 DOWNSTREAM CG17712
3L	1251798	3L_1251798_SNP [dm3] 3L_1251798_SNP [dm6]	C	T	1.384e^-4	0.816	UPSTREAM CG9130 & 1 other DOWNSTREAM CG9129 INTERGENIC
2R	14092544	2R_14092544_SNP [dm3] 2R_18205039_SNP [dm6]	C	T	1.387e^-4	0.816	INTERGENIC
3L	1264444	3L_1264444_SNP [dm3] 3L_1264444_SNP [dm6]	C	T	1.400e^-4	0.816	INTRON CG9134
3R	22504708	3R_22504708_SNP [dm3] 3R_26678986_SNP [dm6]	A	T	1.404e^-4	0.816	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7876536	3R_7876536_SNP [dm3] 3R_12050814_SNP [dm6]	A	G	1.405e^-4	0.816	INTERGENIC
2R	18262141	2R_18262141_SNP [dm3] 2R_22374636_SNP [dm6]	A	T	1.411e^-4	0.816	UPSTREAM Rtf1 EXON CR44759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21217337	3R_21217337_SNP [dm3] 3R_25391615_SNP [dm6]	A	T	1.441e^-4	0.816	INTRON Fur1
3R	25620655	3R_25620655_SNP [dm3] 3R_29794933_SNP [dm6]	A	G	1.445e^-4	0.816	SYNONYMOUS_CODING sro DOWNSTREAM kay & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7876352	3R_7876352_SNP [dm3] 3R_12050630_SNP [dm6]	A	T	1.452e^-4	0.816	INTERGENIC
3L	10464274	3L_10464274_SNP [dm3] 3L_10471174_SNP [dm6]	G	T	1.455e^-4	0.816	INTERGENIC
3R	26431892	3R_26431892_SNP [dm3] 3R_30606170_SNP [dm6]	A	T	1.479e^-4	0.816	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
3L	17596789	3L_17596789_SNP [dm3] 3L_17603689_SNP [dm6]	G	A	1.487e^-4	0.816	INTRON Eip74EF
3L	8880023	3L_8880023_SNP [dm3] 3L_8886923_SNP [dm6]	T	C	1.492e^-4	0.816	SYNONYMOUS_CODING dally
2R	12305000	2R_12305000_SNP [dm3] 2R_16417495_SNP [dm6]	G	A	1.493e^-4	0.816	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
3R	23281538	3R_23281538_SNP [dm3] 3R_27455816_SNP [dm6]	G	C	1.494e^-4	0.816	INTERGENIC
2L	2807639	2L_2807639_SNP [dm3] 2L_2807639_SNP [dm6]	T	C	1.494e^-4	0.816	UPSTREAM daw INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7898872	2R_7898872_SNP [dm3] 2R_12011367_SNP [dm6]	A	G	1.496e^-4	0.816	INTRON otk
2R	13774233	2R_13774233_SNP [dm3] 2R_17886728_SNP [dm6]	G	A	1.497e^-4	0.816	DOWNSTREAM PPO1 INTRON Elk
3L	20271995	3L_20271995_SNP [dm3] 3L_20278895_SNP [dm6]	C	T	1.506e^-4	0.816	INTRON gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15473484	3R_15473484_SNP [dm3] 3R_19647762_SNP [dm6]	C	T	1.515e^-4	0.816	SYNONYMOUS_CODING CG6195 UPSTREAM CG31220 DOWNSTREAM Nup58	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27709387	3R_27709387_SNP [dm3] 3R_31883665_SNP [dm6]	C	T	1.516e^-4	0.816	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4899332	2L_4899332_SNP [dm3] 2L_4899332_SNP [dm6]	A	G	1.517e^-4	0.816	INTRON CG3036
3R	17710322	3R_17710322_SNP [dm3] 3R_21884600_SNP [dm6]	T	C	1.521e^-4	0.816	UPSTREAM CR45046 & 1 other DOWNSTREAM CG17819 & 1 other INTERGENIC
3R	22647033	3R_22647033_SNP [dm3] 3R_26821311_SNP [dm6]	A	T	1.521e^-4	0.816	INTRON Tl
3L	1086740	3L_1086740_SNP [dm3] 3L_1086740_SNP [dm6]	G	A	1.526e^-4	0.816	INTRON bab1
3R	21600319	3R_21600319_SNP [dm3] 3R_25774597_SNP [dm6]	T	C	1.532e^-4	0.816	NON_SYNONYMOUS_CODING CG17197 START_GAINED CG17198 UTR_5_PRIME CG17198 UPSTREAM CG17198 DOWNSTREAM CG17196
3R	21600320	3R_21600320_SNP [dm3] 3R_25774598_SNP [dm6]	A	G	1.532e^-4	0.816	SYNONYMOUS_CODING CG17197 UTR_5_PRIME CG17198 UPSTREAM CG17198 DOWNSTREAM CG17196
3L	10154254	3L_10154254_SNP [dm3] 3L_10161154_SNP [dm6]	C	T	1.535e^-4	0.816	INTRON dpr10
3R	16494835	3R_16494835_SNP [dm3] 3R_20669113_SNP [dm6]	A	T	1.536e^-4	0.816	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
X	3609560	X_3609560_DEL [dm3] X_3715527_DEL [dm6]	ACCAA	A	1.537e^-4	0.816	INTRON Rala
3L	1085744	3L_1085744_INS [dm3] 3L_1085744_INS [dm6]	A	ATTTGTGCTATA...	1.537e^-4	0.816	INTRON bab1
2R	7452430	2R_7452430_DEL [dm3] 2R_11564925_DEL [dm6]	GCCG	G	1.538e^-4	0.816	INTERGENIC
3L	22543193	3L_22543193_SNP [dm3] 3L_22550093_SNP [dm6]	C	A	1.541e^-4	0.816	UPSTREAM Trxr-2 DOWNSTREAM CG11404 INTERGENIC
2R	11079363	2R_11079363_SNP [dm3] 2R_15191858_SNP [dm6]	C	A	1.547e^-4	0.816	DOWNSTREAM Sfp51E INTERGENIC
2L	20623967	2L_20623967_SNP [dm3] 2L_20623967_SNP [dm6]	C	A	1.551e^-4	0.816	INTRON CR44909
2L	1762012	2L_1762012_SNP [dm3] 2L_1762012_SNP [dm6]	T	C	1.555e^-4	0.816	INTERGENIC
3L	8065264	3L_8065264_SNP [dm3] 3L_8072164_SNP [dm6]	G	C	1.558e^-4	0.816	NON_SYNONYMOUS_CODING Ect4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14487947	2L_14487947_SNP [dm3] 2L_14487947_SNP [dm6]	C	T	1.561e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7755799	3L_7755799_SNP [dm3] 3L_7762699_SNP [dm6]	C	A	1.562e^-4	0.816	SYNONYMOUS_CODING Hn DOWNSTREAM Clk
3R	5342518	3R_5342518_SNP [dm3] 3R_9516796_SNP [dm6]	A	G	1.568e^-4	0.816	UPSTREAM mRpL47 & 3 others INTRON JHDM2 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv
2R	5563194	2R_5563194_DEL [dm3] 2R_9675689_DEL [dm6]	AAA	G	1.568e^-4	0.816	INTRON Mmp2
3R	27141810	3R_27141810_SNP [dm3] 3R_31316088_SNP [dm6]	G	A	1.574e^-4	0.816	INTRON CG34347
3L	14249592	3L_14249592_DEL [dm3] 3L_14256492_DEL [dm6]	CGCTTATTAAT...	C	1.581e^-4	0.816	INTERGENIC
3R	25541806	3R_25541806_SNP [dm3] 3R_29716084_SNP [dm6]	C	A	1.585e^-4	0.816	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
2R	9609542	2R_9609542_SNP [dm3] 2R_13722037_SNP [dm6]	A	T	1.586e^-4	0.816	INTRON fas
3L	7806762	3L_7806762_SNP [dm3] 3L_7813662_SNP [dm6]	C	T	1.587e^-4	0.816	UTR_3_PRIME Pdp1 DOWNSTREAM Pdp1
2R	14079526	2R_14079526_SNP [dm3] 2R_18192021_SNP [dm6]	G	T	1.595e^-4	0.816	INTRON CG33958
3R	21217345	3R_21217345_SNP [dm3] 3R_25391623_SNP [dm6]	C	T	1.596e^-4	0.816	INTRON Fur1
3L	1266240	3L_1266240_SNP [dm3] 3L_1266240_SNP [dm6]	A	G	1.602e^-4	0.816	INTRON CG9134
3L	1100867	3L_1100867_SNP [dm3] 3L_1100867_SNP [dm6]	G	T	1.608e^-4	0.816	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	1173962	3R_1173962_SNP [dm3] 3R_5348240_SNP [dm6]	T	C	1.612e^-4	0.816	INTRON mtd
3R	18985167	3R_18985167_SNP [dm3] 3R_23159445_SNP [dm6]	T	A	1.624e^-4	0.816	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9120922	X_9120922_SNP [dm3] X_9226889_SNP [dm6]	G	A	1.624e^-4	0.816	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
2L	5881388	2L_5881388_SNP [dm3] 2L_5881388_SNP [dm6]	T	C	1.630e^-4	0.816	INTERGENIC
2L	8010314	2L_8010314_SNP [dm3] 2L_8010314_SNP [dm6]	G	A	1.632e^-4	0.816	SYNONYMOUS_CODING CG34010 UPSTREAM CG12560	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14249609	3L_14249609_INS [dm3] 3L_14256509_INS [dm6]	G	GC	1.633e^-4	0.816	INTERGENIC
3R	23938649	3R_23938649_SNP [dm3] 3R_28112927_SNP [dm6]	A	G	1.640e^-4	0.816	INTERGENIC
3R	22546365	3R_22546365_INS [dm3] 3R_26720643_INS [dm6]	A	AA	1.654e^-4	0.816	UTR_3_PRIME CG6420 DOWNSTREAM CG5484	TF binding site mE1_TFBS_cad
3L	8858138	3L_8858138_SNP [dm3] 3L_8865038_SNP [dm6]	G	T	1.657e^-4	0.816	INTRON dally
3L	8426976	3L_8426976_SNP [dm3] 3L_8433876_SNP [dm6]	C	T	1.658e^-4	0.816	UTR_3_PRIME Unr DOWNSTREAM Unr
3R	14218016	3R_14218016_SNP [dm3] 3R_18392294_SNP [dm6]	T	A	1.659e^-4	0.816	SYNONYMOUS_CODING Vha100-2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	17087413	2R_17087413_DEL [dm3] 2R_21199908_DEL [dm6]	ATGA	A	1.660e^-4	0.816	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	7397105	2L_7397105_SNP [dm3] 2L_7397105_SNP [dm6]	C	T	1.665e^-4	0.816	INTRON CG5160
3R	27665964	3R_27665964_SNP [dm3] 3R_31840242_SNP [dm6]	A	T	1.676e^-4	0.816	SYNONYMOUS_CODING RhoGAP100F UTR_3_PRIME RhoGAP100F	TF binding site mE1_TFBS_sens
3L	1263408	3L_1263408_SNP [dm3] 3L_1263408_SNP [dm6]	C	T	1.679e^-4	0.816	INTRON CG9134
3L	8888688	3L_8888688_SNP [dm3] 3L_8895588_SNP [dm6]	C	A	1.682e^-4	0.816	SPLICE_SITE_REGION TrpA1 INTRON TrpA1
2L	16368283	2L_16368283_SNP [dm3] 2L_16368283_SNP [dm6]	T	C	1.682e^-4	0.816	INTERGENIC
3L	1084502	3L_1084502_INS [dm3] 3L_1084502_INS [dm6]	G	GA	1.685e^-4	0.816	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	27138249	3R_27138249_INS [dm3] 3R_31312527_INS [dm6]	A	ACCAGAGC	1.699e^-4	0.816	INTRON CG34347
3R	26585215	3R_26585215_SNP [dm3] 3R_30759493_SNP [dm6]	C	G	1.702e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	25421500	3R_25421500_SNP [dm3] 3R_29595778_SNP [dm6]	G	A	1.708e^-4	0.816	INTRON alph
3L	1127543	3L_1127543_SNP [dm3] 3L_1127543_SNP [dm6]	T	C	1.712e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3L	1090751	3L_1090751_SNP [dm3] 3L_1090751_SNP [dm6]	A	C	1.714e^-4	0.816	INTRON bab1	regulatory region REDfly_CRMs
3L	17596771	3L_17596771_SNP [dm3] 3L_17603671_SNP [dm6]	C	G	1.714e^-4	0.816	INTRON Eip74EF
3L	17596795	3L_17596795_SNP [dm3] 3L_17603695_SNP [dm6]	T	G	1.714e^-4	0.816	INTRON Eip74EF
3R	17617329	3R_17617329_SNP [dm3] 3R_21791607_SNP [dm6]	A	G	1.716e^-4	0.816	SPLICE_SITE_REGION CASK INTRON CASK
3L	4532732	3L_4532732_SNP [dm3] 3L_4532732_SNP [dm6]	G	A	1.719e^-4	0.816	UPSTREAM Tie & 1 other INTERGENIC
3L	1230883	3L_1230883_SNP [dm3] 3L_1230883_SNP [dm6]	C	T	1.720e^-4	0.816	INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1265792	3L_1265792_SNP [dm3] 3L_1265792_SNP [dm6]	C	T	1.736e^-4	0.816	UTR_5_PRIME CG9134 INTRON CG9134	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	6410380	2R_6410380_DEL [dm3] 2R_10522875_DEL [dm6]	GCTG	G	1.743e^-4	0.816	CODON_DELETION lola DOWNSTREAM lola INTRON lola	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5313925	2R_5313925_SNP [dm3] 2R_9426420_SNP [dm6]	G	A	1.747e^-4	0.816	UPSTREAM Pdk DOWNSTREAM prel INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7271189	3L_7271189_SNP [dm3] 3L_7278089_SNP [dm6]	G	C	1.748e^-4	0.816	INTRON unc-13-4A
3R	14329140	3R_14329140_SNP [dm3] 3R_18503418_SNP [dm6]	T	A	1.751e^-4	0.816	INTRON fru
3R	11992164	3R_11992164_SNP [dm3] 3R_16166442_SNP [dm6]	A	T	1.759e^-4	0.816	INTRON CG6006	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22549474	3R_22549474_SNP [dm3] 3R_26723752_SNP [dm6]	C	G	1.763e^-4	0.816	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26650430	3R_26650430_SNP [dm3] 3R_30824708_SNP [dm6]	C	A	1.766e^-4	0.816	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3R	19087887	3R_19087887_SNP [dm3] 3R_23262165_SNP [dm6]	A	C	1.776e^-4	0.816	UTR_3_PRIME orb
3R	26436014	3R_26436014_SNP [dm3] 3R_30610292_SNP [dm6]	C	G	1.790e^-4	0.816	UTR_3_PRIME CG31016
2R	2426666	2R_2426666_SNP [dm3] 2R_6539161_SNP [dm6]	C	A	1.794e^-4	0.816	INTRON jing
2R	4068308	2R_4068308_SNP [dm3] 2R_8180803_SNP [dm6]	A	T	1.794e^-4	0.816	INTRON LRP1
3L	1934955	3L_1934955_SNP [dm3] 3L_1934955_SNP [dm6]	C	T	1.796e^-4	0.816	SYNONYMOUS_CODING CG5687
3R	17455073	3R_17455073_SNP [dm3] 3R_21629351_SNP [dm6]	G	C	1.797e^-4	0.816	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	1264488	3L_1264488_SNP [dm3] 3L_1264488_SNP [dm6]	G	T	1.800e^-4	0.816	INTRON CG9134
3L	1264545	3L_1264545_DEL [dm3] 3L_1264545_DEL [dm6]	TT	T	1.800e^-4	0.816	INTRON CG9134
3R	26650415	3R_26650415_SNP [dm3] 3R_30824693_SNP [dm6]	G	A	1.802e^-4	0.816	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3R	26650421	3R_26650421_SNP [dm3] 3R_30824699_SNP [dm6]	G	A	1.802e^-4	0.816	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
X	9121338	X_9121338_SNP [dm3] X_9227305_SNP [dm6]	A	G	1.805e^-4	0.816	NON_SYNONYMOUS_CODING Gr8a DOWNSTREAM CG15370
3R	25139132	3R_25139132_SNP [dm3] 3R_29313410_SNP [dm6]	C	A	1.812e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	27678238	3R_27678238_SNP [dm3] 3R_31852516_SNP [dm6]	A	T	1.827e^-4	0.816	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1204087	3L_1204087_SNP [dm3] 3L_1204087_SNP [dm6]	T	C	1.828e^-4	0.816	SYNONYMOUS_CODING CG9119 INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26091512	3R_26091512_SNP [dm3] 3R_30265790_SNP [dm6]	G	C	1.831e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10296100	3R_10296100_SNP [dm3] 3R_14470378_SNP [dm6]	G	C	1.834e^-4	0.816	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17507254	X_17507254_SNP [dm3] X_17613221_SNP [dm6]	C	G	1.835e^-4	0.816	INTERGENIC
3L	18098016	3L_18098016_SNP [dm3] 3L_18104916_SNP [dm6]	G	C	1.838e^-4	0.816	INTRON CG13698
2R	19393854	2R_19393854_SNP [dm3] 2R_23506331_SNP [dm6]	A	T	1.849e^-4	0.816	DOWNSTREAM CR43794 INTERGENIC
2R	19931543	2R_19931543_SNP [dm3] 2R_24044020_SNP [dm6]	G	A	1.853e^-4	0.816	SYNONYMOUS_CODING IntS1 DOWNSTREAM tsr	TF binding site mE1_TFBS_sens
3R	22504927	3R_22504927_SNP [dm3] 3R_26679205_SNP [dm6]	A	C	1.859e^-4	0.816	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
2R	10946370	2R_10946370_INS [dm3] 2R_15058865_INS [dm6]	C	CTCAACCAC	1.863e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	15220221	2L_15220221_SNP [dm3] 2L_15220221_SNP [dm6]	T	C	1.868e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17596807	3L_17596807_SNP [dm3] 3L_17603707_SNP [dm6]	T	A	1.870e^-4	0.816	INTRON Eip74EF
3R	27665382	3R_27665382_SNP [dm3] 3R_31839660_SNP [dm6]	A	T	1.877e^-4	0.816	INTRON RhoGAP100F
3R	6824588	3R_6824588_SNP [dm3] 3R_10998866_SNP [dm6]	G	A	1.881e^-4	0.816	INTRON CG34114
3L	16766792	3L_16766792_SNP [dm3] 3L_16773692_SNP [dm6]	G	T	1.896e^-4	0.816	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	8147986	3L_8147986_SNP [dm3] 3L_8154886_SNP [dm6]	T	C	1.905e^-4	0.816	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18066390	2R_18066390_SNP [dm3] 2R_22178885_SNP [dm6]	A	G	1.911e^-4	0.816	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
3R	26588362	3R_26588362_SNP [dm3] 3R_30762640_SNP [dm6]	A	T	1.912e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	9114998	3L_9114998_SNP [dm3] 3L_9121898_SNP [dm6]	A	G	1.915e^-4	0.816	INTRON bol
3L	970261	3L_970261_SNP [dm3] 3L_970261_SNP [dm6]	G	A	1.918e^-4	0.816	INTRON Glut1	TF binding site mE1_TFBS_cad
3R	27570416	3R_27570416_SNP [dm3] 3R_31744694_SNP [dm6]	T	A	1.925e^-4	0.816	NON_SYNONYMOUS_CODING CG1896 DOWNSTREAM awd & 1 other	TF binding site mE1_TFBS_sens
3L	9115045	3L_9115045_INS [dm3] 3L_9121945_INS [dm6]	A	ACACACGTT	1.929e^-4	0.816	INTRON bol
2L	20370929	2L_20370929_SNP [dm3] 2L_20370929_SNP [dm6]	T	A	1.930e^-4	0.816	INTERGENIC
3L	18101366	3L_18101366_SNP [dm3] 3L_18108266_SNP [dm6]	G	A	1.931e^-4	0.816	NON_SYNONYMOUS_CODING CG5147 DOWNSTREAM mRpS26	TF binding site mE1_TFBS_sens
3R	16145762	3R_16145762_SNP [dm3] 3R_20320040_SNP [dm6]	C	T	1.933e^-4	0.816	INTRON CG42668
3L	8884634	3L_8884634_SNP [dm3] 3L_8891534_SNP [dm6]	A	G	1.938e^-4	0.816	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	13402981	X_13402981_INS [dm3] X_13508948_INS [dm6]	T	TCAAAGACCACTTTC...	1.947e^-4	0.816	INTRON Neto
3L	1242202	3L_1242202_SNP [dm3] 3L_1242202_SNP [dm6]	G	T	1.957e^-4	0.816	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194
2L	10861647	2L_10861647_SNP [dm3] 2L_10861647_SNP [dm6]	A	G	1.957e^-4	0.816	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
3R	15792739	3R_15792739_DEL [dm3] 3R_19967017_DEL [dm6]	AACCATTGCTTGGCCTACTA...	A	1.958e^-4	0.816	INTRON Hs6st
2R	9206363	2R_9206363_SNP [dm3] 2R_13318858_SNP [dm6]	T	C	1.971e^-4	0.816	INTERGENIC
3L	496532	3L_496532_SNP [dm3] 3L_496532_SNP [dm6]	T	C	1.977e^-4	0.816	INTRON klar
3L	8884670	3L_8884670_SNP [dm3] 3L_8891570_SNP [dm6]	C	T	1.981e^-4	0.816	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1173400	3L_1173400_SNP [dm3] 3L_1173400_SNP [dm6]	G	A	1.985e^-4	0.816	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4736186	2L_4736186_SNP [dm3] 2L_4736186_SNP [dm6]	G	A	1.989e^-4	0.816	SYNONYMOUS_CODING CG15630
2L	6935241	2L_6935241_SNP [dm3] 2L_6935241_SNP [dm6]	G	A	1.994e^-4	0.816	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
2L	17123877	2L_17123877_SNP [dm3] 2L_17123877_SNP [dm6]	C	A	1.997e^-4	0.816	INTRON CG31784
2R	18933862	2R_18933862_SNP [dm3] 2R_23046339_SNP [dm6]	A	C	1.998e^-4	0.816	UTR_5_PRIME twi	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1257929	3L_1257929_SNP [dm3] 3L_1257929_SNP [dm6]	T	C	2.003e^-4	0.816	INTRON CG9134
2L	2519880	2L_2519880_SNP [dm3] 2L_2519880_SNP [dm6]	G	C	2.012e^-4	0.816	INTERGENIC
2R	5181593	2R_5181593_SNP [dm3] 2R_9294088_SNP [dm6]	A	G	2.013e^-4	0.816	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	27782755	3R_27782755_SNP [dm3] 3R_31957033_SNP [dm6]	C	T	2.020e^-4	0.816	INTRON heph	TF binding site mE1_TFBS_cad
3R	26431895	3R_26431895_SNP [dm3] 3R_30606173_SNP [dm6]	A	C	2.022e^-4	0.816	UPSTREAM CG31016 DOWNSTREAM PH4alphaNE3 INTERGENIC
3R	26048894	3R_26048894_DEL [dm3] 3R_30223172_DEL [dm6]	GTCCT	G	2.024e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	1245221	3L_1245221_SNP [dm3] 3L_1245221_SNP [dm6]	A	C	2.028e^-4	0.816	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG32318	TF binding site mE1_TFBS_sens
3R	27135173	3R_27135173_SNP [dm3] 3R_31309451_SNP [dm6]	A	G	2.034e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	13318454	3R_13318454_SNP [dm3] 3R_17492732_SNP [dm6]	A	G	2.034e^-4	0.816	INTRON Dscam3	TF binding site mE1_TFBS_HSA
3L	8144064	3L_8144064_SNP [dm3] 3L_8150964_SNP [dm6]	A	G	2.035e^-4	0.816	INTRON CG13676
X	5855323	X_5855323_SNP [dm3] X_5961290_SNP [dm6]	A	G	2.042e^-4	0.816	SYNONYMOUS_CODING fs_1_M3	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18542250	2L_18542250_SNP [dm3] 2L_18542250_SNP [dm6]	A	T	2.055e^-4	0.816	INTRON Pde11
3L	1104315	3L_1104315_SNP [dm3] 3L_1104315_SNP [dm6]	G	A	2.061e^-4	0.816	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1264566	3L_1264566_SNP [dm3] 3L_1264566_SNP [dm6]	C	A	2.066e^-4	0.816	INTRON CG9134
2R	19687636	2R_19687636_SNP [dm3] 2R_23800113_SNP [dm6]	C	G	2.069e^-4	0.816	INTERGENIC
3L	13254416	3L_13254416_SNP [dm3] 3L_13261316_SNP [dm6]	A	G	2.079e^-4	0.816	INTRON caps
3L	14249578	3L_14249578_SNP [dm3] 3L_14256478_SNP [dm6]	G	T	2.079e^-4	0.816	INTERGENIC
3L	14249579	3L_14249579_SNP [dm3] 3L_14256479_SNP [dm6]	A	T	2.079e^-4	0.816	INTERGENIC
3L	14249581	3L_14249581_SNP [dm3] 3L_14256481_SNP [dm6]	T	C	2.079e^-4	0.816	INTERGENIC
2R	1398674	2R_1398674_SNP [dm3] 2R_5511169_SNP [dm6]	A	T	2.083e^-4	0.816	INTRON CG30438	transposable element FlyBase
2L	11500395	2L_11500395_SNP [dm3] 2L_11500395_SNP [dm6]	T	G	2.092e^-4	0.816	INTERGENIC
2L	4441363	2L_4441363_SNP [dm3] 2L_4441363_SNP [dm6]	G	T	2.106e^-4	0.816	UPSTREAM CG15431 & 1 other DOWNSTREAM Sfp24F INTERGENIC	TF binding site mE1_TFBS_Trl
3L	8884651	3L_8884651_SNP [dm3] 3L_8891551_SNP [dm6]	T	C	2.111e^-4	0.816	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8885372	3L_8885372_SNP [dm3] 3L_8892272_SNP [dm6]	G	T	2.111e^-4	0.816	INTRON Mcm7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8885385	3L_8885385_SNP [dm3] 3L_8892285_SNP [dm6]	C	T	2.111e^-4	0.816	SPLICE_SITE_REGION Mcm7 SYNONYMOUS_CODING Mcm7	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17087746	2R_17087746_SNP [dm3] 2R_21200241_SNP [dm6]	A	T	2.113e^-4	0.816	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	7854267	3L_7854267_SNP [dm3] 3L_7861167_SNP [dm6]	C	T	2.116e^-4	0.816	INTRON Pdp1
2R	20218512	2R_20218512_SNP [dm3] 2R_24330989_SNP [dm6]	C	T	2.116e^-4	0.816	DOWNSTREAM CR44810 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17042604	3R_17042604_SNP [dm3] 3R_21216882_SNP [dm6]	G	A	2.121e^-4	0.816	DOWNSTREAM CG5862 & 1 other EXON CR43975
3L	7843384	3L_7843384_SNP [dm3] 3L_7850284_SNP [dm6]	A	T	2.123e^-4	0.816	INTRON Pdp1	regulatory region REDfly_CRMs
3L	8884648	3L_8884648_SNP [dm3] 3L_8891548_SNP [dm6]	A	T	2.128e^-4	0.816	UPSTREAM Mcm7 DOWNSTREAM dally INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	26689630	3R_26689630_SNP [dm3] 3R_30863908_SNP [dm6]	C	T	2.137e^-4	0.816	INTERGENIC
2L	14340126	2L_14340126_SNP [dm3] 2L_14340126_SNP [dm6]	T	A	2.138e^-4	0.816	DOWNSTREAM CG15286 INTRON CG33090
3R	10250772	3R_10250772_SNP [dm3] 3R_14425050_SNP [dm6]	C	G	2.141e^-4	0.816	INTRON cv-c
3L	4867160	3L_4867160_SNP [dm3] 3L_4867160_SNP [dm6]	G	C	2.141e^-4	0.816	INTRON CG17150
3R	10250778	3R_10250778_SNP [dm3] 3R_14425056_SNP [dm6]	A	T	2.141e^-4	0.816	INTRON cv-c
3R	1198387	3R_1198387_SNP [dm3] 3R_5372665_SNP [dm6]	C	A	2.143e^-4	0.816	UTR_3_PRIME hd DOWNSTREAM CG31542 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	1092194	3L_1092194_SNP [dm3] 3L_1092194_SNP [dm6]	T	G	2.143e^-4	0.816	INTRON bab1	regulatory region REDfly_CRMs
3L	8166801	3L_8166801_SNP [dm3] 3L_8173701_SNP [dm6]	C	G	2.147e^-4	0.816	SYNONYMOUS_CODING RecQ4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20664048	2L_20664048_SNP [dm3] 2L_20664048_SNP [dm6]	T	A	2.151e^-4	0.816	NON_SYNONYMOUS_CODING CG31678 UPSTREAM CR45004	TF binding site mE1_TFBS_cad
2R	8783743	2R_8783743_SNP [dm3] 2R_12896238_SNP [dm6]	G	T	2.158e^-4	0.816	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27148015	3R_27148015_SNP [dm3] 3R_31322293_SNP [dm6]	A	T	2.158e^-4	0.816	INTRON CG34347
3R	17062583	3R_17062583_SNP [dm3] 3R_21236861_SNP [dm6]	C	T	2.171e^-4	0.816	INTRON e	regulatory region REDfly_CRMs
X	10303895	X_10303895_SNP [dm3] X_10409862_SNP [dm6]	C	T	2.171e^-4	0.816	DOWNSTREAM CG32683 & 1 other INTERGENIC
2R	12191272	2R_12191272_SNP [dm3] 2R_16303767_SNP [dm6]	C	T	2.174e^-4	0.816	EXON CR45232
3L	8666303	3L_8666303_SNP [dm3] 3L_8673203_SNP [dm6]	G	T	2.178e^-4	0.816	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	17087749	2R_17087749_INS [dm3] 2R_21200244_INS [dm6]	T	TT	2.180e^-4	0.816	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	17617235	3R_17617235_SNP [dm3] 3R_21791513_SNP [dm6]	T	C	2.184e^-4	0.816	INTRON CASK
2R	6591921	2R_6591921_SNP [dm3] 2R_10704416_SNP [dm6]	A	C	2.188e^-4	0.816	INTRON stan
2L	2807902	2L_2807902_SNP [dm3] 2L_2807902_SNP [dm6]	A	T	2.194e^-4	0.816	UPSTREAM daw INTRON daw	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	7103657	3L_7103657_SNP [dm3] 3L_7110557_SNP [dm6]	T	C	2.196e^-4	0.816	INTRON form3
3L	5528470	3L_5528470_SNP [dm3] 3L_5535370_SNP [dm6]	T	G	2.198e^-4	0.816	INTRON CG13285
3L	5528616	3L_5528616_SNP [dm3] 3L_5535516_SNP [dm6]	G	A	2.198e^-4	0.816	SYNONYMOUS_CODING CG13285
3L	1263370	3L_1263370_SNP [dm3] 3L_1263370_SNP [dm6]	G	A	2.203e^-4	0.816	INTRON CG9134
3L	3268343	3L_3268343_SNP [dm3] 3L_3268343_SNP [dm6]	A	T	2.210e^-4	0.816	UPSTREAM CG34265 DOWNSTREAM ckd INTERGENIC
3R	14217944	3R_14217944_SNP [dm3] 3R_18392222_SNP [dm6]	A	G	2.211e^-4	0.816	SYNONYMOUS_CODING Vha100-2	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	1125733	3L_1125733_SNP [dm3] 3L_1125733_SNP [dm6]	C	G	2.218e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3R	13318350	3R_13318350_DEL [dm3] 3R_17492628_DEL [dm6]	ACCGTTGCAGAAGTAGTAAC...	A	2.219e^-4	0.816	INTRON Dscam3	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	1245146	3L_1245146_SNP [dm3] 3L_1245146_SNP [dm6]	A	G	2.231e^-4	0.816	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
3R	20374417	3R_20374417_INS [dm3] 3R_24548695_INS [dm6]	G	GG	2.241e^-4	0.816	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1264551	3L_1264551_SNP [dm3] 3L_1264551_SNP [dm6]	G	A	2.249e^-4	0.816	INTRON CG9134
3L	9244441	3L_9244441_SNP [dm3] 3L_9251341_SNP [dm6]	G	A	2.257e^-4	0.816	UPSTREAM GluRIB DOWNSTREAM CG4477 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8426845	3L_8426845_SNP [dm3] 3L_8433745_SNP [dm6]	G	A	2.258e^-4	0.816	UTR_3_PRIME Unr DOWNSTREAM Unr
3R	10283876	3R_10283876_SNP [dm3] 3R_14458154_SNP [dm6]	A	C	2.261e^-4	0.816	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22994944	3R_22994944_SNP [dm3] 3R_27169222_SNP [dm6]	G	T	2.269e^-4	0.816	INTERGENIC	regulatory region REDfly_CRMs
3L	8147975	3L_8147975_SNP [dm3] 3L_8154875_SNP [dm6]	A	G	2.274e^-4	0.816	UTR_3_PRIME CG42445	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18060208	3R_18060208_SNP [dm3] 3R_22234486_SNP [dm6]	G	T	2.277e^-4	0.816	INTRON SKIP
3R	14264152	3R_14264152_SNP [dm3] 3R_18438430_SNP [dm6]	C	A	2.279e^-4	0.816	INTRON fru
2R	19367729	2R_19367729_SNP [dm3] 2R_23480206_SNP [dm6]	C	T	2.281e^-4	0.816	INTRON CG43795
3R	27697565	3R_27697565_SNP [dm3] 3R_31871843_SNP [dm6]	C	T	2.284e^-4	0.816	INTRON heph	TF binding site BDTNP1_TFBS_da
3R	27745495	3R_27745495_SNP [dm3] 3R_31919773_SNP [dm6]	C	T	2.284e^-4	0.816	INTRON heph
3R	27764031	3R_27764031_SNP [dm3] 3R_31938309_SNP [dm6]	C	G	2.284e^-4	0.816	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	27792575	3R_27792575_SNP [dm3] 3R_31966853_SNP [dm6]	A	T	2.284e^-4	0.816	INTRON heph	TF binding site BDTNP1_TFBS_prd
3L	18031956	3L_18031956_SNP [dm3] 3L_18038856_SNP [dm6]	C	A	2.303e^-4	0.819	INTRON Eip75B
3L	6439775	3L_6439775_SNP [dm3] 3L_6446675_SNP [dm6]	T	C	2.305e^-4	0.819	INTRON CG42747
2L	20665538	2L_20665538_SNP [dm3] 2L_20665538_SNP [dm6]	C	A	2.308e^-4	0.819	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3R	27572137	3R_27572137_SNP [dm3] 3R_31746415_SNP [dm6]	C	T	2.312e^-4	0.819	UPSTREAM awd DOWNSTREAM nero INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	1244806	3L_1244806_SNP [dm3] 3L_1244806_SNP [dm6]	G	A	2.313e^-4	0.819	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4974124	2L_4974124_SNP [dm3] 2L_4974124_SNP [dm6]	C	G	2.321e^-4	0.819	START_GAINED mRpL28 UTR_5_PRIME mRpL28 UPSTREAM l_2_05714 DOWNSTREAM CG14043	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1093297	3L_1093297_SNP [dm3] 3L_1093297_SNP [dm6]	T	A	2.329e^-4	0.819	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	16198796	3L_16198796_SNP [dm3] 3L_16205696_SNP [dm6]	A	G	2.345e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1750695	2L_1750695_SNP [dm3] 2L_1750695_SNP [dm6]	T	G	2.345e^-4	0.819	UTR_3_PRIME CG17712 DOWNSTREAM CG17646
2L	19216496	2L_19216496_SNP [dm3] 2L_19216496_SNP [dm6]	A	T	2.352e^-4	0.819	UPSTREAM CR44189 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3R	11216218	3R_11216218_SNP [dm3] 3R_15390496_SNP [dm6]	T	A	2.357e^-4	0.819	INTRON Rbp
3R	24027250	3R_24027250_SNP [dm3] 3R_28201528_SNP [dm6]	T	C	2.357e^-4	0.819	INTRON CG34354
3L	20645606	3L_20645606_INS [dm3] 3L_20652506_INS [dm6]	C	CAGAATAAAC	2.374e^-4	0.819	UPSTREAM CR44685 INTERGENIC
2L	19843863	2L_19843863_SNP [dm3] 2L_19843863_SNP [dm6]	G	A	2.378e^-4	0.819	INTRON sick
2R	19392614	2R_19392614_SNP [dm3] 2R_23505091_SNP [dm6]	C	A	2.380e^-4	0.819	INTERGENIC
3R	18548021	3R_18548021_SNP [dm3] 3R_22722299_SNP [dm6]	A	T	2.384e^-4	0.819	INTRON Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17957182	3R_17957182_SNP [dm3] 3R_22131460_SNP [dm6]	G	A	2.401e^-4	0.819	INTRON CG42390
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	2.405e^-4	0.819	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20594902	2L_20594902_SNP [dm3] 2L_20594902_SNP [dm6]	T	C	2.406e^-4	0.819	INTRON CR44909
3R	25541799	3R_25541799_SNP [dm3] 3R_29716077_SNP [dm6]	A	G	2.412e^-4	0.819	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	1414100	3L_1414100_SNP [dm3] 3L_1414100_SNP [dm6]	T	C	2.413e^-4	0.819	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12152355	3L_12152355_SNP [dm3] 3L_12159255_SNP [dm6]	A	G	2.414e^-4	0.819	SYNONYMOUS_CODING CG9760
2L	19211654	2L_19211654_SNP [dm3] 2L_19211654_SNP [dm6]	T	A	2.416e^-4	0.819	INTERGENIC
X	6451477	X_6451477_SNP [dm3] X_6557444_SNP [dm6]	G	A	2.417e^-4	0.819	NON_SYNONYMOUS_CODING CG34417 INTRON CG34417
3R	27567292	3R_27567292_SNP [dm3] 3R_31741570_SNP [dm6]	C	A	2.422e^-4	0.819	INTRON Ef1alpha100E	TF binding site mE1_TFBS_chinmo
3L	8884240	3L_8884240_SNP [dm3] 3L_8891140_SNP [dm6]	G	A	2.423e^-4	0.819	UTR_3_PRIME dally UPSTREAM Mcm7 DOWNSTREAM dally	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	1079661	3L_1079661_SNP [dm3] 3L_1079661_SNP [dm6]	A	G	2.433e^-4	0.819	INTRON bab1
2L	3751199	2L_3751199_SNP [dm3] 2L_3751199_SNP [dm6]	G	A	2.434e^-4	0.819	INTRON CG10019
X	12746625	X_12746625_SNP [dm3] X_12852592_SNP [dm6]	A	T	2.438e^-4	0.819	INTRON Pde9
3L	21358927	3L_21358927_DEL [dm3] 3L_21365827_DEL [dm6]	CT	C	2.439e^-4	0.819	INTERGENIC
2R	6438492	2R_6438492_SNP [dm3] 2R_10550987_SNP [dm6]	G	C	2.446e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	2758204	X_2758204_SNP [dm3] X_2864171_SNP [dm6]	A	G	2.449e^-4	0.819	INTRON kirre
2R	4025268	2R_4025268_SNP [dm3] 2R_8137763_SNP [dm6]	C	G	2.456e^-4	0.819	DOWNSTREAM Lpin INTRON Lpin
3R	26111685	3R_26111685_MNP [dm3] 3R_30285963_MNP [dm6]	TCG	AAA	2.457e^-4	0.819	INTRON hdc
3R	16748598	3R_16748598_SNP [dm3] 3R_20922876_SNP [dm6]	C	A	2.471e^-4	0.819	INTRON CG31191 & 1 other
3R	10605952	3R_10605952_SNP [dm3] 3R_14780230_SNP [dm6]	G	A	2.482e^-4	0.819	INTRON jvl
3L	4969278	3L_4969278_SNP [dm3] 3L_4969278_SNP [dm6]	T	A	2.483e^-4	0.819	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	10250742	3R_10250742_SNP [dm3] 3R_14425020_SNP [dm6]	A	T	2.485e^-4	0.819	INTRON cv-c
3R	26390934	3R_26390934_SNP [dm3] 3R_30565212_SNP [dm6]	A	G	2.491e^-4	0.819	INTRON tmod
3L	8437934	3L_8437934_INS [dm3] 3L_8444834_INS [dm6]	T	TTCCCCAAGCT...	2.500e^-4	0.819	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8437309	3L_8437309_SNP [dm3] 3L_8444209_SNP [dm6]	T	C	2.504e^-4	0.819	SYNONYMOUS_CODING CG6983	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	20220110	3L_20220110_SNP [dm3] 3L_20227010_SNP [dm6]	C	T	2.504e^-4	0.819	SYNONYMOUS_CODING Su_var_3-3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1655501	3R_1655501_SNP [dm3] 3R_5829779_SNP [dm6]	G	C	2.507e^-4	0.819	UPSTREAM glob3 INTERGENIC	transposable element FlyBase
3R	26399920	3R_26399920_SNP [dm3] 3R_30574198_SNP [dm6]	A	G	2.509e^-4	0.819	UTR_3_PRIME tmod INTRON tmod
2R	9894939	2R_9894939_SNP [dm3] 2R_14007434_SNP [dm6]	A	G	2.511e^-4	0.819	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15062443	2R_15062443_SNP [dm3] 2R_19174938_SNP [dm6]	T	C	2.516e^-4	0.819	SYNONYMOUS_CODING CG10737
3R	25358730	3R_25358730_SNP [dm3] 3R_29533008_SNP [dm6]	C	G	2.518e^-4	0.819	INTERGENIC
2R	18266062	2R_18266062_SNP [dm3] 2R_22378557_SNP [dm6]	T	C	2.518e^-4	0.819	DOWNSTREAM Rtf1 EXON CR45327
3R	26585208	3R_26585208_SNP [dm3] 3R_30759486_SNP [dm6]	G	C	2.531e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3L	1933146	3L_1933146_SNP [dm3] 3L_1933146_SNP [dm6]	C	T	2.531e^-4	0.819	SYNONYMOUS_CODING Dbx DOWNSTREAM CG5687	TF binding site mE1_TFBS_chinmo
3R	11077337	3R_11077337_SNP [dm3] 3R_15251615_SNP [dm6]	A	G	2.533e^-4	0.819	INTRON CG42404	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18327562	3L_18327562_SNP [dm3] 3L_18334462_SNP [dm6]	T	C	2.537e^-4	0.819	INTERGENIC	TF binding site mE1_TFBS_inv
2L	22908102	2L_22908102_SNP [dm3] 2L_23015370_SNP [dm6]	A	G	2.537e^-4	0.819	NON_SYNONYMOUS_CODING Cht3
X	16931010	X_16931010_SNP [dm3] X_17036977_SNP [dm6]	A	C	2.545e^-4	0.819	INTRON CG45002
2R	10681108	2R_10681108_SNP [dm3] 2R_14793603_SNP [dm6]	T	A	2.554e^-4	0.819	INTRON kn	TF binding site BDTNP1_TFBS_twi
X	13037214	X_13037214_SNP [dm3] X_13143181_SNP [dm6]	G	T	2.554e^-4	0.819	INTRON CG32645	TF binding site BDTNP1_TFBS_dl
3L	1264498	3L_1264498_SNP [dm3] 3L_1264498_SNP [dm6]	G	C	2.556e^-4	0.819	INTRON CG9134
3R	10283817	3R_10283817_SNP [dm3] 3R_14458095_SNP [dm6]	G	A	2.556e^-4	0.819	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1245159	3L_1245159_SNP [dm3] 3L_1245159_SNP [dm6]	T	G	2.563e^-4	0.819	DOWNSTREAM CG32318 INTRON Klp61F	TF binding site mE1_TFBS_sens
X	5007287	X_5007287_SNP [dm3] X_5113254_SNP [dm6]	T	C	2.564e^-4	0.819	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13037220	X_13037220_SNP [dm3] X_13143187_SNP [dm6]	A	G	2.573e^-4	0.819	INTRON CG32645	TF binding site BDTNP1_TFBS_dl
X	2512769	X_2512769_SNP [dm3] X_2618736_SNP [dm6]	G	A	2.576e^-4	0.819	SYNONYMOUS_CODING Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	15032128	X_15032128_SNP [dm3] X_15138095_SNP [dm6]	G	A	2.576e^-4	0.819	UTR_3_PRIME RpL37a DOWNSTREAM drd & 1 other	TF binding site mE1_TFBS_bab1
3L	2500487	3L_2500487_SNP [dm3] 3L_2500487_SNP [dm6]	A	G	2.595e^-4	0.819	INTRON CG16758	TF binding site mE1_TFBS_chinmo
X	7535798	X_7535798_SNP [dm3] X_7641765_SNP [dm6]	G	C	2.599e^-4	0.819	INTRON ct
3R	27773852	3R_27773852_SNP [dm3] 3R_31948130_SNP [dm6]	C	A	2.600e^-4	0.819	INTRON heph
3L	5224019	3L_5224019_SNP [dm3] 3L_5230919_SNP [dm6]	C	G	2.607e^-4	0.819	INTRON shep
2R	6438567	2R_6438567_SNP [dm3] 2R_10551062_SNP [dm6]	C	A	2.608e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1285276	3L_1285276_SNP [dm3] 3L_1285276_SNP [dm6]	A	T	2.608e^-4	0.819	INTRON CG32333
2R	6438603	2R_6438603_SNP [dm3] 2R_10551098_SNP [dm6]	G	A	2.610e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	26878125	3R_26878125_SNP [dm3] 3R_31052403_SNP [dm6]	C	T	2.611e^-4	0.819	SYNONYMOUS_CODING Aph-4 DOWNSTREAM l_3_03670	TF binding site mE1_TFBS_sbb
3L	5480918	3L_5480918_SNP [dm3] 3L_5487818_SNP [dm6]	A	T	2.627e^-4	0.819	INTERGENIC
3L	8146439	3L_8146439_DEL [dm3] 3L_8153339_DEL [dm6]	AA	A	2.636e^-4	0.819	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25435061	3R_25435061_DEL [dm3] 3R_29609339_DEL [dm6]	CCT	C	2.636e^-4	0.819	DOWNSTREAM Diedel2 INTRON alph
2L	4399706	2L_4399706_SNP [dm3] 2L_4399706_SNP [dm6]	C	G	2.637e^-4	0.819	SYNONYMOUS_CODING l_2_k05819
3L	17441059	3L_17441059_SNP [dm3] 3L_17447959_SNP [dm6]	A	T	2.638e^-4	0.819	INTRON CG18265
3L	14249605	3L_14249605_SNP [dm3] 3L_14256505_SNP [dm6]	C	G	2.639e^-4	0.819	INTERGENIC
3L	15453186	3L_15453186_SNP [dm3] 3L_15460086_SNP [dm6]	T	C	2.642e^-4	0.819	INTERGENIC
3L	1935018	3L_1935018_SNP [dm3] 3L_1935018_SNP [dm6]	A	G	2.643e^-4	0.819	SYNONYMOUS_CODING CG5687
2R	8620865	2R_8620865_SNP [dm3] 2R_12733360_SNP [dm6]	A	G	2.647e^-4	0.819	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4753770	2L_4753770_SNP [dm3] 2L_4753770_SNP [dm6]	C	T	2.648e^-4	0.819	INTRON CG15630
3L	9592274	3L_9592274_SNP [dm3] 3L_9599174_SNP [dm6]	A	G	2.659e^-4	0.82	SYNONYMOUS_CODING CG3222 DOWNSTREAM CG14177	TF binding site mE1_TFBS_cad
2R	3596939	2R_3596939_SNP [dm3] 2R_7709434_SNP [dm6]	A	T	2.667e^-4	0.82	UPSTREAM CG1941 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17276014	2R_17276014_SNP [dm3] 2R_21388509_SNP [dm6]	A	T	2.678e^-4	0.82	NON_SYNONYMOUS_CODING Acox57D-p UPSTREAM Acox57D-d
3R	8721860	3R_8721860_SNP [dm3] 3R_12896138_SNP [dm6]	T	G	2.693e^-4	0.82	INTERGENIC
3R	26324662	3R_26324662_SNP [dm3] 3R_30498940_SNP [dm6]	G	A	2.702e^-4	0.82	SYNONYMOUS_CODING PH4alphaNE1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8964903	2R_8964903_SNP [dm3] 2R_13077398_SNP [dm6]	A	G	2.702e^-4	0.82	INTRON Drl-2	TF binding site mE1_TFBS_cad
3R	1198293	3R_1198293_DEL [dm3] 3R_5372571_DEL [dm6]	CAAT	C	2.715e^-4	0.82	DOWNSTREAM hd & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	4351385	3L_4351385_SNP [dm3] 3L_4351385_SNP [dm6]	G	A	2.719e^-4	0.82	INTRON Cip4
2L	8504277	2L_8504277_SNP [dm3] 2L_8504277_SNP [dm6]	C	A	2.726e^-4	0.82	INTRON Dh31
2R	8783627	2R_8783627_SNP [dm3] 2R_12896122_SNP [dm6]	A	G	2.729e^-4	0.82	INTRON vg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26431915	3R_26431915_SNP [dm3] 3R_30606193_SNP [dm6]	C	T	2.737e^-4	0.82	UTR_5_PRIME CG31016 DOWNSTREAM PH4alphaNE3
3R	21628284	3R_21628284_SNP [dm3] 3R_25802562_SNP [dm6]	C	A	2.742e^-4	0.82	INTERGENIC
2L	10090520	2L_10090520_SNP [dm3] 2L_10090520_SNP [dm6]	T	C	2.747e^-4	0.82	DOWNSTREAM CG13133 INTRON CG44153
3R	27138601	3R_27138601_SNP [dm3] 3R_31312879_SNP [dm6]	G	A	2.748e^-4	0.82	INTRON CG34347	TF binding site mE1_TFBS_inv
X	22247220	X_22247220_SNP [dm3] X_22845384_SNP [dm6]	C	T	2.749e^-4	0.82	INTRON fog & 1 other
X	3919011	X_3919011_SNP [dm3] X_4024978_SNP [dm6]	C	T	2.750e^-4	0.82	INTERGENIC
3R	26553128	3R_26553128_SNP [dm3] 3R_30727406_SNP [dm6]	C	G	2.751e^-4	0.82	NON_SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17612668	2R_17612668_DEL [dm3] 2R_21725163_DEL [dm6]	TGAAAACTACTACT...	A	2.763e^-4	0.82	INTERGENIC
3R	22412747	3R_22412747_SNP [dm3] 3R_26587025_SNP [dm6]	G	A	2.765e^-4	0.82	UTR_3_PRIME scrib INTRON scrib
3R	25566162	3R_25566162_DEL [dm3] 3R_29740440_DEL [dm6]	TCAGTCC	T	2.765e^-4	0.82	INTRON CG1969	TF binding site BDTNP1_TFBS_dl
2L	18353099	2L_18353099_SNP [dm3] 2L_18353099_SNP [dm6]	A	G	2.775e^-4	0.82	INTRON Fas3
2L	3402534	2L_3402534_SNP [dm3] 2L_3402534_SNP [dm6]	A	G	2.777e^-4	0.82	INTERGENIC
3R	25474952	3R_25474952_SNP [dm3] 3R_29649230_SNP [dm6]	T	C	2.785e^-4	0.82	INTRON Dop1R2
3R	25474962	3R_25474962_SNP [dm3] 3R_29649240_SNP [dm6]	A	C	2.785e^-4	0.82	INTRON Dop1R2
3R	24855849	3R_24855849_SNP [dm3] 3R_29030127_SNP [dm6]	A	T	2.794e^-4	0.82	NON_SYNONYMOUS_CODING CG1951 UPSTREAM CR45044 DOWNSTREAM Ssl2
X	15527392	X_15527392_SNP [dm3] X_15633359_SNP [dm6]	G	T	2.799e^-4	0.82	UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18547995	3R_18547995_DEL [dm3] 3R_22722273_DEL [dm6]	CAC	C	2.802e^-4	0.82	INTRON Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	4399727	2L_4399727_SNP [dm3] 2L_4399727_SNP [dm6]	C	G	2.802e^-4	0.82	SYNONYMOUS_CODING l_2_k05819
2L	1743970	2L_1743970_SNP [dm3] 2L_1743970_SNP [dm6]	A	G	2.809e^-4	0.82	INTRON CG17646
2R	9897121	2R_9897121_SNP [dm3] 2R_14009616_SNP [dm6]	T	C	2.810e^-4	0.82	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3R	24027254	3R_24027254_SNP [dm3] 3R_28201532_SNP [dm6]	A	G	2.824e^-4	0.82	INTRON CG34354
2L	11500463	2L_11500463_SNP [dm3] 2L_11500463_SNP [dm6]	A	T	2.824e^-4	0.82	INTERGENIC
X	12414134	X_12414134_SNP [dm3] X_12520101_SNP [dm6]	T	C	2.840e^-4	0.82	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	13734037	2R_13734037_DEL [dm3] 2R_17846532_DEL [dm6]	TACGCT	T	2.840e^-4	0.82	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1120423	3L_1120423_SNP [dm3] 3L_1120423_SNP [dm6]	T	A	2.843e^-4	0.82	INTERGENIC
2L	11843804	2L_11843804_SNP [dm3] 2L_11843804_SNP [dm6]	G	T	2.850e^-4	0.82	NON_SYNONYMOUS_CODING CG42486 UTR_3_PRIME CG14933 DOWNSTREAM CG14933 INTRON Pde1c
2L	2093053	2L_2093053_DEL [dm3] 2L_2093053_DEL [dm6]	GG	G	2.855e^-4	0.82	INTRON dpr3
2R	8783703	2R_8783703_SNP [dm3] 2R_12896198_SNP [dm6]	G	A	2.866e^-4	0.82	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17065506	3R_17065506_SNP [dm3] 3R_21239784_SNP [dm6]	C	A	2.872e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
3R	16912435	3R_16912435_SNP [dm3] 3R_21086713_SNP [dm6]	C	T	2.882e^-4	0.82	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1264484	3L_1264484_SNP [dm3] 3L_1264484_SNP [dm6]	T	C	2.893e^-4	0.82	INTRON CG9134
3R	16264558	3R_16264558_SNP [dm3] 3R_20438836_SNP [dm6]	C	A	2.898e^-4	0.82	INTRON Gfrl
3R	18985204	3R_18985204_SNP [dm3] 3R_23159482_SNP [dm6]	T	A	2.899e^-4	0.82	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26962380	3R_26962380_SNP [dm3] 3R_31136658_SNP [dm6]	G	T	2.899e^-4	0.82	INTRON Gycbeta100B
3R	27132553	3R_27132553_SNP [dm3] 3R_31306831_SNP [dm6]	C	G	2.905e^-4	0.82	INTERGENIC
2L	849884	2L_849884_SNP [dm3] 2L_849884_SNP [dm6]	A	G	2.910e^-4	0.82	UPSTREAM CR44060 INTRON drongo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	12556123	2R_12556123_SNP [dm3] 2R_16668618_SNP [dm6]	G	A	2.916e^-4	0.82	UPSTREAM Picot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1941362	3L_1941362_SNP [dm3] 3L_1941362_SNP [dm6]	T	A	2.928e^-4	0.82	SYNONYMOUS_CODING Mfap1 UPSTREAM CR44536	TF binding site mE1_TFBS_cad
2L	20470494	2L_20470494_SNP [dm3] 2L_20470494_SNP [dm6]	G	A	2.935e^-4	0.82	INTRON CR44980
3R	6009459	3R_6009459_SNP [dm3] 3R_10183737_SNP [dm6]	G	C	2.941e^-4	0.82	INTRON CG12814
3L	18323066	3L_18323066_SNP [dm3] 3L_18329966_SNP [dm6]	C	T	2.944e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad
3R	3002083	3R_3002083_SNP [dm3] 3R_7176361_SNP [dm6]	C	G	2.944e^-4	0.82	INTRON sas
2R	5563214	2R_5563214_SNP [dm3] 2R_9675709_SNP [dm6]	G	C	2.948e^-4	0.82	INTRON Mmp2
3R	26586850	3R_26586850_SNP [dm3] 3R_30761128_SNP [dm6]	T	G	2.948e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3461729	2L_3461729_SNP [dm3] 2L_3461729_SNP [dm6]	T	G	2.950e^-4	0.82	DOWNSTREAM msl-2 INTRON CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5707354	2L_5707354_SNP [dm3] 2L_5707354_SNP [dm6]	A	G	2.956e^-4	0.82	INTRON CG7236
3L	1085454	3L_1085454_SNP [dm3] 3L_1085454_SNP [dm6]	T	C	2.958e^-4	0.82	INTRON bab1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	1092546	3L_1092546_SNP [dm3] 3L_1092546_SNP [dm6]	C	G	2.958e^-4	0.82	INTRON bab1	regulatory region REDfly_CRMs
3L	12157189	3L_12157189_SNP [dm3] 3L_12164089_SNP [dm6]	A	G	2.966e^-4	0.82	UPSTREAM CG9760 DOWNSTREAM Rh7 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14345655	3L_14345655_INS [dm3] 3L_14352555_INS [dm6]	T	TT	2.967e^-4	0.82	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21369936	3R_21369936_SNP [dm3] 3R_25544214_SNP [dm6]	A	T	2.972e^-4	0.82	INTRON msi	TF binding site mE1_TFBS_cad
3R	18538671	3R_18538671_SNP [dm3] 3R_22712949_SNP [dm6]	T	C	2.973e^-4	0.82	SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_Kr
2R	15159496	2R_15159496_SNP [dm3] 2R_19271991_SNP [dm6]	A	T	2.973e^-4	0.82	INTRON rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
X	8761456	X_8761456_DEL [dm3] X_8867423_DEL [dm6]	TGTCAATGTGTTCTT...	T	2.974e^-4	0.82	INTRON CG12075
3R	26689392	3R_26689392_SNP [dm3] 3R_30863670_SNP [dm6]	G	T	2.975e^-4	0.82	INTERGENIC
3L	16693769	3L_16693769_SNP [dm3] 3L_16700669_SNP [dm6]	T	C	2.979e^-4	0.82	INTRON Lasp & 1 other
2R	6542593	2R_6542593_SNP [dm3] 2R_10655088_SNP [dm6]	T	A	2.980e^-4	0.82	INTERGENIC
2L	13966393	2L_13966393_SNP [dm3] 2L_13966393_SNP [dm6]	C	T	2.982e^-4	0.82	INTRON NimB2
3L	6965217	3L_6965217_SNP [dm3] 3L_6972117_SNP [dm6]	G	A	2.989e^-4	0.82	SYNONYMOUS_CODING CG10063 DOWNSTREAM CG9953 & 1 other
3L	1120650	3L_1120650_SNP [dm3] 3L_1120650_SNP [dm6]	A	G	2.996e^-4	0.82	INTERGENIC
3R	17454947	3R_17454947_SNP [dm3] 3R_21629225_SNP [dm6]	T	C	2.999e^-4	0.82	INTRON E2f	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	9115354	3L_9115354_SNP [dm3] 3L_9122254_SNP [dm6]	A	G	3.003e^-4	0.82	INTRON bol
2L	17123857	2L_17123857_SNP [dm3] 2L_17123857_SNP [dm6]	A	T	3.011e^-4	0.82	INTRON CG31784
2L	13125378	2L_13125378_SNP [dm3] 2L_13125378_SNP [dm6]	C	T	3.013e^-4	0.82	INTERGENIC
2R	19886202	2R_19886202_SNP [dm3] 2R_23998679_SNP [dm6]	A	C	3.015e^-4	0.82	INTRON Unc-89	TF binding site mE1_TFBS_chinmo
2R	12557420	2R_12557420_SNP [dm3] 2R_16669915_SNP [dm6]	C	T	3.017e^-4	0.82	UPSTREAM CG34457 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13929972	2R_13929972_SNP [dm3] 2R_18042467_SNP [dm6]	T	C	3.033e^-4	0.82	UTR_3_PRIME CG5773 DOWNSTREAM CG5773
X	8154772	X_8154772_SNP [dm3] X_8260739_SNP [dm6]	T	C	3.038e^-4	0.82	INTRON CG1632
3R	25409465	3R_25409465_SNP [dm3] 3R_29583743_SNP [dm6]	C	A	3.041e^-4	0.82	INTERGENIC
3R	18133574	3R_18133574_SNP [dm3] 3R_22307852_SNP [dm6]	T	A	3.052e^-4	0.82	DOWNSTREAM CG34377 INTERGENIC
3L	1257676	3L_1257676_DEL [dm3] 3L_1257676_DEL [dm6]	CGAGTTATTTGTTAT...	C	3.053e^-4	0.82	INTRON CG9134
3R	20304817	3R_20304817_SNP [dm3] 3R_24479095_SNP [dm6]	C	T	3.056e^-4	0.82	INTERGENIC
3L	1092199	3L_1092199_SNP [dm3] 3L_1092199_SNP [dm6]	A	G	3.057e^-4	0.82	INTRON bab1	regulatory region REDfly_CRMs
3R	27138016	3R_27138016_SNP [dm3] 3R_31312294_SNP [dm6]	G	A	3.058e^-4	0.82	INTRON CG34347
3R	25541803	3R_25541803_SNP [dm3] 3R_29716081_SNP [dm6]	A	T	3.061e^-4	0.82	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	15793354	3R_15793354_SNP [dm3] 3R_19967632_SNP [dm6]	A	T	3.071e^-4	0.82	INTRON Hs6st
X	5855488	X_5855488_SNP [dm3] X_5961455_SNP [dm6]	C	T	3.077e^-4	0.82	INTRON fs_1_M3	TF binding site mE1_TFBS_sens
3L	1036161	3L_1036161_SNP [dm3] 3L_1036161_SNP [dm6]	A	G	3.077e^-4	0.82	SYNONYMOUS_CODING CG9205 DOWNSTREAM bab1
3L	14249567	3L_14249567_SNP [dm3] 3L_14256467_SNP [dm6]	G	T	3.077e^-4	0.82	INTERGENIC
3L	10454678	3L_10454678_SNP [dm3] 3L_10461578_SNP [dm6]	C	A	3.077e^-4	0.82	NON_SYNONYMOUS_CODING Gem3
2L	17216288	2L_17216288_DEL [dm3] 2L_17216288_DEL [dm6]	AA	A	3.078e^-4	0.82	INTRON beat-IIIc
2L	5509977	2L_5509977_SNP [dm3] 2L_5509977_SNP [dm6]	A	G	3.078e^-4	0.82	INTERGENIC
2L	1985699	2L_1985699_SNP [dm3] 2L_1985699_SNP [dm6]	G	A	3.081e^-4	0.82	SYNONYMOUS_CODING Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13400656	X_13400656_SNP [dm3] X_13506623_SNP [dm6]	C	T	3.085e^-4	0.82	INTRON Neto
3L	1902454	3L_1902454_SNP [dm3] 3L_1902454_SNP [dm6]	T	G	3.095e^-4	0.82	NON_SYNONYMOUS_CODING CG1887 INTRON CG1887	TF binding site mE1_TFBS_inv
3L	2166293	3L_2166293_SNP [dm3] 3L_2166293_SNP [dm6]	A	G	3.098e^-4	0.82	INTERGENIC
X	12746653	X_12746653_SNP [dm3] X_12852620_SNP [dm6]	T	G	3.100e^-4	0.82	INTRON Pde9
X	8956173	X_8956173_SNP [dm3] X_9062140_SNP [dm6]	C	A	3.101e^-4	0.82	UPSTREAM CG15365 INTRON CG15365
3R	17064659	3R_17064659_SNP [dm3] 3R_21238937_SNP [dm6]	C	T	3.120e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
2L	20667539	2L_20667539_SNP [dm3] 2L_20667539_SNP [dm6]	A	T	3.126e^-4	0.82	INTRON CG31678 EXON CR45004	TF binding site mE1_TFBS_inv
3R	15793341	3R_15793341_SNP [dm3] 3R_19967619_SNP [dm6]	A	T	3.130e^-4	0.82	INTRON Hs6st
2R	18716009	2R_18716009_SNP [dm3] 2R_22828486_SNP [dm6]	A	G	3.136e^-4	0.82	INTRON CG30274 & 1 other
2L	4736189	2L_4736189_SNP [dm3] 2L_4736189_SNP [dm6]	C	A	3.138e^-4	0.82	SYNONYMOUS_CODING CG15630
3L	16766793	3L_16766793_SNP [dm3] 3L_16773693_SNP [dm6]	G	A	3.138e^-4	0.82	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	1302486	3R_1302486_SNP [dm3] 3R_5476764_SNP [dm6]	G	T	3.143e^-4	0.82	SYNONYMOUS_CODING Hcs	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25761498	3R_25761498_SNP [dm3] 3R_29935776_SNP [dm6]	G	C	3.146e^-4	0.82	UPSTREAM CG15523 INTRON eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	1263497	3L_1263497_SNP [dm3] 3L_1263497_SNP [dm6]	A	T	3.151e^-4	0.82	INTRON CG9134
3R	16569640	3R_16569640_INS [dm3] 3R_20743918_INS [dm6]	T	TGTAT	3.165e^-4	0.82	UPSTREAM CG31199 DOWNSTREAM CG31200 INTRON CG42322
3R	1172287	3R_1172287_SNP [dm3] 3R_5346565_SNP [dm6]	T	C	3.169e^-4	0.82	INTRON mtd
2R	7123491	2R_7123491_SNP [dm3] 2R_11235986_SNP [dm6]	T	G	3.170e^-4	0.82	DOWNSTREAM CG13217 & 1 other INTRON CG34223
3R	27098685	3R_27098685_SNP [dm3] 3R_31272963_SNP [dm6]	G	C	3.172e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20839758	2L_20839758_SNP [dm3] 2L_20839758_SNP [dm6]	C	G	3.174e^-4	0.82	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	2173820	3L_2173820_SNP [dm3] 3L_2173820_SNP [dm6]	T	C	3.187e^-4	0.82	NON_SYNONYMOUS_CODING CG15820	TF binding site mE1_TFBS_cad
3R	13397506	3R_13397506_DEL [dm3] 3R_17571784_DEL [dm6]	AA	A	3.191e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	22504742	3R_22504742_SNP [dm3] 3R_26679020_SNP [dm6]	A	G	3.195e^-4	0.82	INTRON beat-VII	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16494845	3R_16494845_SNP [dm3] 3R_20669123_SNP [dm6]	G	A	3.196e^-4	0.82	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
3R	24027236	3R_24027236_SNP [dm3] 3R_28201514_SNP [dm6]	T	A	3.203e^-4	0.82	INTRON CG34354
2R	6438595	2R_6438595_MNP [dm3] 2R_10551090_MNP [dm6]	AAG	GTA	3.205e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	1544057	3L_1544057_SNP [dm3] 3L_1544057_SNP [dm6]	C	T	3.212e^-4	0.82	SYNONYMOUS_CODING CG7852 UTR_3_PRIME CG7852 DOWNSTREAM CG32313	TF binding site mE1_TFBS_sens
3L	1085773	3L_1085773_INS [dm3] 3L_1085773_INS [dm6]	A	ATTTATA	3.213e^-4	0.82	INTRON bab1
2L	13758497	2L_13758497_SNP [dm3] 2L_13758497_SNP [dm6]	A	T	3.214e^-4	0.82	INTRON TM9SF4
2R	9803095	2R_9803095_SNP [dm3] 2R_13915590_SNP [dm6]	C	T	3.221e^-4	0.82	INTRON shot
3R	25138787	3R_25138787_SNP [dm3] 3R_29313065_SNP [dm6]	C	T	3.229e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25139131	3R_25139131_SNP [dm3] 3R_29313409_SNP [dm6]	T	A	3.232e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	21600270	3R_21600270_SNP [dm3] 3R_25774548_SNP [dm6]	A	T	3.232e^-4	0.82	NON_SYNONYMOUS_CODING CG17197 UTR_5_PRIME CG17198 UPSTREAM CG17198 DOWNSTREAM CG17196
2L	5303348	2L_5303348_SNP [dm3] 2L_5303348_SNP [dm6]	A	G	3.239e^-4	0.82	INTRON vri	regulatory region FlyBase
2L	16197019	2L_16197019_SNP [dm3] 2L_16197019_SNP [dm6]	T	C	3.242e^-4	0.82	UPSTREAM CR44735 INTERGENIC
2L	1743556	2L_1743556_SNP [dm3] 2L_1743556_SNP [dm6]	A	G	3.244e^-4	0.82	INTRON CG17646
3L	1120634	3L_1120634_SNP [dm3] 3L_1120634_SNP [dm6]	A	T	3.249e^-4	0.82	INTERGENIC
2R	12483583	2R_12483583_SNP [dm3] 2R_16596078_SNP [dm6]	G	A	3.253e^-4	0.82	SYNONYMOUS_CODING CG8303	TF binding site mE1_TFBS_sens
3R	16145737	3R_16145737_SNP [dm3] 3R_20320015_SNP [dm6]	C	A	3.259e^-4	0.82	INTRON CG42668
2L	20574414	2L_20574414_SNP [dm3] 2L_20574414_SNP [dm6]	G	A	3.263e^-4	0.82	INTRON CR45347	TF binding site mE1_TFBS_inv
2R	19880907	2R_19880907_SNP [dm3] 2R_23993384_SNP [dm6]	G	T	3.265e^-4	0.82	NON_SYNONYMOUS_CODING CG3860 UPSTREAM mir-1009
2R	9206361	2R_9206361_SNP [dm3] 2R_13318856_SNP [dm6]	C	T	3.269e^-4	0.82	INTERGENIC
2R	19391914	2R_19391914_SNP [dm3] 2R_23504391_SNP [dm6]	G	A	3.271e^-4	0.82	DOWNSTREAM CG13559 INTERGENIC
3L	13741077	3L_13741077_SNP [dm3] 3L_13747977_SNP [dm6]	C	T	3.277e^-4	0.82	INTRON bru-3
3R	19430393	3R_19430393_SNP [dm3] 3R_23604671_SNP [dm6]	G	T	3.280e^-4	0.82	INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9897554	2R_9897554_SNP [dm3] 2R_14010049_SNP [dm6]	G	A	3.284e^-4	0.82	INTRON mam
3L	1263533	3L_1263533_SNP [dm3] 3L_1263533_SNP [dm6]	C	A	3.284e^-4	0.82	INTRON CG9134
2R	4080366	2R_4080366_SNP [dm3] 2R_8192861_SNP [dm6]	C	A	3.284e^-4	0.82	INTRON LRP1
2R	12556371	2R_12556371_SNP [dm3] 2R_16668866_SNP [dm6]	G	A	3.289e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	6715352	3L_6715352_SNP [dm3] 3L_6722252_SNP [dm6]	A	G	3.292e^-4	0.82	INTERGENIC
4	464046	4_464046_SNP [dm3] 4_443420_SNP [dm6]	A	G	3.294e^-4	0.82	UTR_5_PRIME lgs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	1238077	3L_1238077_SNP [dm3] 3L_1238077_SNP [dm6]	G	A	3.296e^-4	0.82	SYNONYMOUS_CODING CG9192 INTRON CG9194	TF binding site mE1_TFBS_chinmo mE1_TFBS_cnc mE1_TFBS_HSA
X	7861331	X_7861331_INS [dm3] X_7967298_INS [dm6]	A	AA	3.308e^-4	0.82	INTRON sn & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_Ubx
3R	26588487	3R_26588487_SNP [dm3] 3R_30762765_SNP [dm6]	G	A	3.311e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
2R	8966655	2R_8966655_SNP [dm3] 2R_13079150_SNP [dm6]	G	C	3.315e^-4	0.82	UTR_5_PRIME Drl-2
2L	6824572	2L_6824572_SNP [dm3] 2L_6824572_SNP [dm6]	T	A	3.346e^-4	0.82	INTRON sens-2
X	5969915	X_5969915_SNP [dm3] X_6075882_SNP [dm6]	C	G	3.348e^-4	0.82	DOWNSTREAM CG4666 INTERGENIC
3L	1320746	3L_1320746_SNP [dm3] 3L_1320746_SNP [dm6]	C	T	3.348e^-4	0.82	UPSTREAM Myo61F INTRON Myo61F
2L	3553070	2L_3553070_SNP [dm3] 2L_3553070_SNP [dm6]	A	G	3.350e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
X	13037221	X_13037221_SNP [dm3] X_13143188_SNP [dm6]	T	C	3.353e^-4	0.82	INTRON CG32645	TF binding site BDTNP1_TFBS_dl
2L	8113257	2L_8113257_SNP [dm3] 2L_8113257_SNP [dm6]	A	C	3.353e^-4	0.82	UTR_3_PRIME Bsg
3L	16693772	3L_16693772_SNP [dm3] 3L_16700672_SNP [dm6]	C	A	3.356e^-4	0.82	INTRON Lasp & 1 other
3R	24027266	3R_24027266_SNP [dm3] 3R_28201544_SNP [dm6]	A	T	3.360e^-4	0.82	INTRON CG34354
3R	25227957	3R_25227957_SNP [dm3] 3R_29402235_SNP [dm6]	A	G	3.361e^-4	0.82	INTRON Ptp99A
3R	22082470	3R_22082470_SNP [dm3] 3R_26256748_SNP [dm6]	T	G	3.364e^-4	0.82	INTRON Ald	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
4	392223	4_392223_SNP [dm3] 4_371597_SNP [dm6]	T	A	3.366e^-4	0.82	INTRON Hcf
2R	9897513	2R_9897513_SNP [dm3] 2R_14010008_SNP [dm6]	C	A	3.373e^-4	0.82	INTRON mam
X	15032250	X_15032250_SNP [dm3] X_15138217_SNP [dm6]	A	G	3.381e^-4	0.82	UTR_3_PRIME RpL37a DOWNSTREAM drd & 1 other	TF binding site mE1_TFBS_bab1
2R	8783661	2R_8783661_SNP [dm3] 2R_12896156_SNP [dm6]	A	T	3.404e^-4	0.82	INTRON vg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9402662	3L_9402662_SNP [dm3] 3L_9409562_SNP [dm6]	C	T	3.408e^-4	0.82	SYNONYMOUS_CODING CG4022	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6052707	2L_6052707_SNP [dm3] 2L_6052707_SNP [dm6]	C	A	3.419e^-4	0.82	INTRON CG9135	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	22328282	3R_22328282_DEL [dm3] 3R_26502560_DEL [dm6]	CC	C	3.420e^-4	0.82	INTRON plum
3R	26416251	3R_26416251_SNP [dm3] 3R_30590529_SNP [dm6]	T	C	3.424e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15101580	2L_15101580_SNP [dm3] 2L_15101580_SNP [dm6]	T	A	3.434e^-4	0.82	INTERGENIC
3R	17065083	3R_17065083_SNP [dm3] 3R_21239361_SNP [dm6]	A	T	3.436e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
3L	388329	3L_388329_SNP [dm3] 3L_388329_SNP [dm6]	A	T	3.437e^-4	0.82	INTRON trh	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20665625	2L_20665625_SNP [dm3] 2L_20665625_SNP [dm6]	A	T	3.445e^-4	0.82	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3R	13397516	3R_13397516_SNP [dm3] 3R_17571794_SNP [dm6]	C	T	3.447e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
X	20961665	X_20961665_SNP [dm3] X_21090638_SNP [dm6]	T	A	3.450e^-4	0.82	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19392559	2R_19392559_SNP [dm3] 2R_23505036_SNP [dm6]	A	T	3.451e^-4	0.82	INTERGENIC
2R	11725545	2R_11725545_SNP [dm3] 2R_15838040_SNP [dm6]	G	A	3.454e^-4	0.82	INTRON tun	regulatory region REDfly_CRMs
3R	26469484	3R_26469484_SNP [dm3] 3R_30643762_SNP [dm6]	G	T	3.455e^-4	0.82	DOWNSTREAM CG31013 INTERGENIC
X	3609807	X_3609807_INS [dm3] X_3715774_INS [dm6]	C	TTT	3.455e^-4	0.82	INTRON Rala
3R	16494952	3R_16494952_SNP [dm3] 3R_20669230_SNP [dm6]	G	C	3.457e^-4	0.82	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1244338	3L_1244338_SNP [dm3] 3L_1244338_SNP [dm6]	C	T	3.459e^-4	0.82	SYNONYMOUS_CODING Klp61F	TF binding site mE1_TFBS_sens
3R	25435065	3R_25435065_SNP [dm3] 3R_29609343_SNP [dm6]	T	C	3.460e^-4	0.82	DOWNSTREAM Diedel2 INTRON alph
3L	5338335	3L_5338335_SNP [dm3] 3L_5345235_SNP [dm6]	A	G	3.467e^-4	0.82	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad
2L	5891711	2L_5891711_SNP [dm3] 2L_5891711_SNP [dm6]	A	G	3.468e^-4	0.82	DOWNSTREAM Acp26Ab INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11081269	3R_11081269_SNP [dm3] 3R_15255547_SNP [dm6]	C	T	3.474e^-4	0.82	INTRON CG42404	TF binding site mE1_TFBS_cad
2R	14213165	2R_14213165_INS [dm3] 2R_18325660_INS [dm6]	T	TT	3.478e^-4	0.82	INTRON sbb
3L	17591389	3L_17591389_SNP [dm3] 3L_17598289_SNP [dm6]	G	A	3.478e^-4	0.82	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad
3L	1250133	3L_1250133_SNP [dm3] 3L_1250133_SNP [dm6]	G	A	3.481e^-4	0.82	UTR_3_PRIME Sac1 UPSTREAM CG9129
3L	3547801	3L_3547801_SNP [dm3] 3L_3547801_SNP [dm6]	T	C	3.481e^-4	0.82	INTRON Eip63E
2R	19366724	2R_19366724_SNP [dm3] 2R_23479201_SNP [dm6]	C	T	3.482e^-4	0.82	INTRON CG43795
2R	19366725	2R_19366725_SNP [dm3] 2R_23479202_SNP [dm6]	T	C	3.482e^-4	0.82	INTRON CG43795
2R	8783690	2R_8783690_SNP [dm3] 2R_12896185_SNP [dm6]	G	T	3.484e^-4	0.82	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11082045	3R_11082045_SNP [dm3] 3R_15256323_SNP [dm6]	A	C	3.487e^-4	0.82	UTR_3_PRIME CG42404
3L	8658756	3L_8658756_SNP [dm3] 3L_8665656_SNP [dm6]	A	C	3.489e^-4	0.82	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	9905294	2R_9905294_SNP [dm3] 2R_14017789_SNP [dm6]	C	T	3.491e^-4	0.82	INTRON mam
2L	4753775	2L_4753775_SNP [dm3] 2L_4753775_SNP [dm6]	A	T	3.492e^-4	0.82	INTRON CG15630
2L	20665545	2L_20665545_DEL [dm3] 2L_20665545_DEL [dm6]	AGATGATAACTTTTCCTCA...	A	3.499e^-4	0.82	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3L	1127527	3L_1127527_SNP [dm3] 3L_1127527_SNP [dm6]	C	A	3.505e^-4	0.82	INTERGENIC	regulatory region REDfly_CRMs
2L	5584573	2L_5584573_SNP [dm3] 2L_5584573_SNP [dm6]	C	T	3.506e^-4	0.82	INTERGENIC
2L	8227485	2L_8227485_SNP [dm3] 2L_8227485_SNP [dm6]	A	C	3.507e^-4	0.82	INTRON Pvr	TF binding site BDTNP1_TFBS_twi
3L	1230862	3L_1230862_SNP [dm3] 3L_1230862_SNP [dm6]	T	G	3.518e^-4	0.821	INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4292988	X_4292988_SNP [dm3] X_4398955_SNP [dm6]	G	A	3.521e^-4	0.821	INTRON CR32773
X	16295943	X_16295943_INS [dm3] X_16401910_INS [dm6]	A	AA	3.529e^-4	0.822	INTRON CG9981
2L	20714179	2L_20714179_SNP [dm3] 2L_20714179_SNP [dm6]	G	A	3.539e^-4	0.823	UTR_5_PRIME Hr38 INTRON Hr38	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6423030	3R_6423030_DEL [dm3] 3R_10597308_DEL [dm6]	AA	A	3.543e^-4	0.823	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	11078311	X_11078311_DEL [dm3] X_11184278_DEL [dm6]	ACCA	A	3.550e^-4	0.824	DOWNSTREAM CG15200 INTERGENIC
3R	16145744	3R_16145744_SNP [dm3] 3R_20320022_SNP [dm6]	C	T	3.560e^-4	0.825	INTRON CG42668
3L	8384417	3L_8384417_SNP [dm3] 3L_8391317_SNP [dm6]	A	G	3.570e^-4	0.827	UPSTREAM Jon66Ci DOWNSTREAM ImpE1 INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
3R	25538627	3R_25538627_SNP [dm3] 3R_29712905_SNP [dm6]	G	A	3.585e^-4	0.829	DOWNSTREAM CR45569 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25552406	3R_25552406_SNP [dm3] 3R_29726684_SNP [dm6]	C	T	3.591e^-4	0.829	DOWNSTREAM CG18731 INTRON Kul	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	4399580	2L_4399580_SNP [dm3] 2L_4399580_SNP [dm6]	G	C	3.597e^-4	0.829	SYNONYMOUS_CODING l_2_k05819
3L	10155914	3L_10155914_SNP [dm3] 3L_10162814_SNP [dm6]	A	G	3.602e^-4	0.829	INTRON dpr10
3L	1269394	3L_1269394_SNP [dm3] 3L_1269394_SNP [dm6]	G	A	3.623e^-4	0.829	INTRON CG9134
X	15634701	X_15634701_INS [dm3] X_15740668_INS [dm6]	A	TGG	3.625e^-4	0.829	DOWNSTREAM CG8206 & 1 other INTERGENIC	TF binding site mE1_TFBS_cnc
2L	15525111	2L_15525111_SNP [dm3] 2L_15525111_SNP [dm6]	G	C	3.629e^-4	0.829	INTERGENIC
2R	5181567	2R_5181567_SNP [dm3] 2R_9294062_SNP [dm6]	G	A	3.666e^-4	0.829	UPSTREAM Drep-2 INTRON Drep-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	18900025	2R_18900025_SNP [dm3] 2R_23012502_SNP [dm6]	C	T	3.668e^-4	0.829	SYNONYMOUS_CODING CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo
3L	8658254	3L_8658254_SNP [dm3] 3L_8665154_SNP [dm6]	T	G	3.672e^-4	0.829	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	22501456	3R_22501456_SNP [dm3] 3R_26675734_SNP [dm6]	A	G	3.672e^-4	0.829	INTRON beat-VII
2R	3791863	2R_3791863_SNP [dm3] 2R_7904358_SNP [dm6]	G	T	3.675e^-4	0.829	INTRON CG30377
3R	26588494	3R_26588494_SNP [dm3] 3R_30762772_SNP [dm6]	T	A	3.679e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	6817218	3L_6817218_SNP [dm3] 3L_6824118_SNP [dm6]	G	T	3.683e^-4	0.829	INTERGENIC	regulatory region REDfly_CRMs
3L	1127483	3L_1127483_SNP [dm3] 3L_1127483_SNP [dm6]	C	T	3.688e^-4	0.829	INTERGENIC	regulatory region REDfly_CRMs
3L	1127592	3L_1127592_SNP [dm3] 3L_1127592_SNP [dm6]	T	A	3.688e^-4	0.829	INTERGENIC	regulatory region REDfly_CRMs
3R	14092298	3R_14092298_SNP [dm3] 3R_18266576_SNP [dm6]	C	T	3.691e^-4	0.829	INTERGENIC
3R	25541777	3R_25541777_SNP [dm3] 3R_29716055_SNP [dm6]	G	A	3.692e^-4	0.829	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3R	26932831	3R_26932831_SNP [dm3] 3R_31107109_SNP [dm6]	A	G	3.692e^-4	0.829	SYNONYMOUS_CODING CG11318
3R	14092317	3R_14092317_SNP [dm3] 3R_18266595_SNP [dm6]	T	C	3.703e^-4	0.829	INTERGENIC
3R	25541255	3R_25541255_SNP [dm3] 3R_29715533_SNP [dm6]	C	G	3.704e^-4	0.829	UPSTREAM Dup99B DOWNSTREAM Obp99d & 1 other INTERGENIC
3R	10285988	3R_10285988_SNP [dm3] 3R_14460266_SNP [dm6]	C	T	3.704e^-4	0.829	INTRON cv-c
3L	22532958	3L_22532958_SNP [dm3] 3L_22539858_SNP [dm6]	C	A	3.705e^-4	0.829	INTERGENIC
2R	19390797	2R_19390797_SNP [dm3] 2R_23503274_SNP [dm6]	A	G	3.711e^-4	0.829	START_GAINED CG13559 UTR_5_PRIME CG13559
X	13038175	X_13038175_SNP [dm3] X_13144142_SNP [dm6]	T	A	3.712e^-4	0.829	INTRON CG32645
X	12723816	X_12723816_SNP [dm3] X_12829783_SNP [dm6]	G	A	3.718e^-4	0.829	SYNONYMOUS_CODING Pde9	TF binding site mE1_TFBS_chinmo
3R	14060192	3R_14060192_SNP [dm3] 3R_18234470_SNP [dm6]	T	A	3.721e^-4	0.829	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	12076924	2R_12076924_SNP [dm3] 2R_16189419_SNP [dm6]	G	A	3.723e^-4	0.829	SYNONYMOUS_CODING clu	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26766711	3R_26766711_SNP [dm3] 3R_30940989_SNP [dm6]	G	T	3.724e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26585232	3R_26585232_SNP [dm3] 3R_30759510_SNP [dm6]	G	A	3.735e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	10614459	3R_10614459_SNP [dm3] 3R_14788737_SNP [dm6]	A	T	3.737e^-4	0.829	NON_SYNONYMOUS_CODING jvl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14611594	3R_14611594_SNP [dm3] 3R_18785872_SNP [dm6]	A	C	3.744e^-4	0.829	INTRON CG7720
2L	6935148	2L_6935148_SNP [dm3] 2L_6935148_SNP [dm6]	C	T	3.746e^-4	0.829	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad
3R	22645863	3R_22645863_SNP [dm3] 3R_26820141_SNP [dm6]	T	A	3.752e^-4	0.829	INTRON Tl
3R	9617016	3R_9617016_SNP [dm3] 3R_13791294_SNP [dm6]	A	T	3.758e^-4	0.829	INTERGENIC
3R	25541789	3R_25541789_SNP [dm3] 3R_29716067_SNP [dm6]	G	T	3.760e^-4	0.829	UPSTREAM Dup99B DOWNSTREAM Obp99b INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_zfh1
3L	7852376	3L_7852376_SNP [dm3] 3L_7859276_SNP [dm6]	G	C	3.764e^-4	0.829	INTRON Pdp1
X	4085077	X_4085077_SNP [dm3] X_4191044_SNP [dm6]	G	A	3.768e^-4	0.829	INTRON Fas2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	127854	3L_127854_SNP [dm3] 3L_127854_SNP [dm6]	A	T	3.768e^-4	0.829	UPSTREAM CR45400 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13908768	2L_13908768_SNP [dm3] 2L_13908768_SNP [dm6]	T	A	3.773e^-4	0.829	SYNONYMOUS_CODING Ance UPSTREAM Ance-2	TF binding site mE1_TFBS_cad
X	19488966	X_19488966_SNP [dm3] X_19594933_SNP [dm6]	G	T	3.773e^-4	0.829	NON_SYNONYMOUS_CODING CG14205
2R	18261198	2R_18261198_SNP [dm3] 2R_22373693_SNP [dm6]	A	G	3.788e^-4	0.829	UPSTREAM Liprin-gamma DOWNSTREAM CR44759 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12120593	3L_12120593_SNP [dm3] 3L_12127493_SNP [dm6]	A	T	3.797e^-4	0.829	UPSTREAM CG34241 & 1 other INTERGENIC
3L	8065946	3L_8065946_SNP [dm3] 3L_8072846_SNP [dm6]	T	A	3.800e^-4	0.829	INTRON Ect4
3R	23204793	3R_23204793_SNP [dm3] 3R_27379071_SNP [dm6]	G	A	3.802e^-4	0.829	UTR_3_PRIME side INTRON side
3L	1243744	3L_1243744_SNP [dm3] 3L_1243744_SNP [dm6]	C	G	3.807e^-4	0.829	NON_SYNONYMOUS_CODING Klp61F
3R	16145728	3R_16145728_SNP [dm3] 3R_20320006_SNP [dm6]	C	A	3.818e^-4	0.829	SPLICE_SITE_REGION CG42668 INTRON CG42668
2L	7566746	2L_7566746_INS [dm3] 2L_7566746_INS [dm6]	G	GG	3.821e^-4	0.829	INTRON RapGAP1
2R	19628939	2R_19628939_DEL [dm3] 2R_23741416_DEL [dm6]	ATTC	A	3.825e^-4	0.829	INTRON egl
2L	11843803	2L_11843803_SNP [dm3] 2L_11843803_SNP [dm6]	T	C	3.825e^-4	0.829	SYNONYMOUS_CODING CG42486 UTR_3_PRIME CG14933 DOWNSTREAM CG14933 INTRON Pde1c
3R	13397510	3R_13397510_SNP [dm3] 3R_17571788_SNP [dm6]	T	A	3.835e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3L	12592226	3L_12592226_DEL [dm3] 3L_12599126_DEL [dm6]	TT	T	3.836e^-4	0.829	INTERGENIC
3L	16766787	3L_16766787_SNP [dm3] 3L_16773687_SNP [dm6]	T	G	3.840e^-4	0.829	INTRON Nrt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	15792678	3R_15792678_SNP [dm3] 3R_19966956_SNP [dm6]	C	G	3.841e^-4	0.829	INTRON Hs6st
2R	19390793	2R_19390793_SNP [dm3] 2R_23503270_SNP [dm6]	G	T	3.845e^-4	0.829	UTR_5_PRIME CG13559
2L	18825117	2L_18825117_SNP [dm3] 2L_18825117_SNP [dm6]	G	C	3.845e^-4	0.829	SYNONYMOUS_CODING CG17323	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22147600	3R_22147600_SNP [dm3] 3R_26321878_SNP [dm6]	T	C	3.848e^-4	0.829	INTRON CG33970	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14478446	2L_14478446_DEL [dm3] 2L_14478446_DEL [dm6]	AA	T	3.856e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	19370801	2R_19370801_SNP [dm3] 2R_23483278_SNP [dm6]	A	T	3.860e^-4	0.829	INTRON CG43795	TF binding site mE1_TFBS_chinmo
2L	1258683	2L_1258683_SNP [dm3] 2L_1258683_SNP [dm6]	C	A	3.862e^-4	0.829	INTRON robo3
3L	1909349	3L_1909349_SNP [dm3] 3L_1909349_SNP [dm6]	T	A	3.862e^-4	0.829	INTRON CG1887
3R	17709054	3R_17709054_SNP [dm3] 3R_21883332_SNP [dm6]	G	A	3.872e^-4	0.829	SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1086794	3L_1086794_SNP [dm3] 3L_1086794_SNP [dm6]	C	T	3.875e^-4	0.829	INTRON bab1
2R	19392672	2R_19392672_SNP [dm3] 2R_23505149_SNP [dm6]	A	G	3.875e^-4	0.829	INTERGENIC
2R	12556876	2R_12556876_SNP [dm3] 2R_16669371_SNP [dm6]	C	A	3.878e^-4	0.829	UPSTREAM CG34457 INTERGENIC
2R	17612407	2R_17612407_SNP [dm3] 2R_21724902_SNP [dm6]	A	T	3.892e^-4	0.829	DOWNSTREAM LBR INTERGENIC
3L	6829669	3L_6829669_SNP [dm3] 3L_6836569_SNP [dm6]	G	A	3.893e^-4	0.829	INTERGENIC	TF binding site mE1_TFBS_inv
3R	9880148	3R_9880148_SNP [dm3] 3R_14054426_SNP [dm6]	T	C	3.894e^-4	0.829	INTERGENIC
4	517708	4_517708_SNP [dm3] 4_497082_SNP [dm6]	T	G	3.902e^-4	0.829	INTERGENIC
3R	14701768	3R_14701768_SNP [dm3] 3R_18876046_SNP [dm6]	C	A	3.907e^-4	0.829	INTRON CG14298
2R	9894776	2R_9894776_SNP [dm3] 2R_14007271_SNP [dm6]	C	T	3.908e^-4	0.829	INTRON mam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	5524263	3L_5524263_SNP [dm3] 3L_5531163_SNP [dm6]	G	A	3.910e^-4	0.829	INTERGENIC
2R	19554197	2R_19554197_SNP [dm3] 2R_23666674_SNP [dm6]	A	T	3.915e^-4	0.829	UPSTREAM Pde8 INTRON Pde8	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18487452	2L_18487452_SNP [dm3] 2L_18487452_SNP [dm6]	T	C	3.916e^-4	0.829	UTR_3_PRIME CG10176 DOWNSTREAM kon	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22549473	3R_22549473_SNP [dm3] 3R_26723751_SNP [dm6]	A	T	3.919e^-4	0.829	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11057944	2R_11057944_SNP [dm3] 2R_15170439_SNP [dm6]	T	A	3.927e^-4	0.829	INTRON igl	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2175107	3L_2175107_SNP [dm3] 3L_2175107_SNP [dm6]	C	A	3.927e^-4	0.829	UPSTREAM CG15820 INTERGENIC
3R	25559540	3R_25559540_SNP [dm3] 3R_29733818_SNP [dm6]	C	A	3.927e^-4	0.829	UTR_3_PRIME Kul
3L	11583995	3L_11583995_INS [dm3] 3L_11590895_INS [dm6]	G	GG	3.928e^-4	0.829	UTR_3_PRIME CG33268 DOWNSTREAM CG7377
2L	14478451	2L_14478451_SNP [dm3] 2L_14478451_SNP [dm6]	C	G	3.935e^-4	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	15902491	3L_15902491_SNP [dm3] 3L_15909391_SNP [dm6]	C	T	3.936e^-4	0.829	INTRON sff
3R	17709143	3R_17709143_SNP [dm3] 3R_21883421_SNP [dm6]	C	T	3.942e^-4	0.829	NON_SYNONYMOUS_CODING CG31465 UTR_3_PRIME CG31465 DOWNSTREAM fit EXON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16761920	3R_16761920_SNP [dm3] 3R_20936198_SNP [dm6]	T	A	3.948e^-4	0.829	INTRON CG31191
2L	20627367	2L_20627367_SNP [dm3] 2L_20627367_SNP [dm6]	T	C	3.951e^-4	0.829	INTERGENIC
3R	26811412	3R_26811412_SNP [dm3] 3R_30985690_SNP [dm6]	G	A	3.957e^-4	0.829	INTRON 5-HT7
X	17316791	X_17316791_SNP [dm3] X_17422758_SNP [dm6]	A	C	3.964e^-4	0.83	UTR_3_PRIME CG12994 UPSTREAM CG8611 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	25566171	3R_25566171_SNP [dm3] 3R_29740449_SNP [dm6]	A	T	3.970e^-4	0.83	INTRON CG1969	TF binding site BDTNP1_TFBS_dl
3R	17709778	3R_17709778_SNP [dm3] 3R_21884056_SNP [dm6]	A	G	3.975e^-4	0.83	UTR_3_PRIME fit UPSTREAM CR45046 DOWNSTREAM CG17819 & 1 other INTRON CR45046	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	26416089	3R_26416089_SNP [dm3] 3R_30590367_SNP [dm6]	G	T	3.984e^-4	0.831	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2605183	3L_2605183_SNP [dm3] 3L_2605183_SNP [dm6]	C	T	4.001e^-4	0.831	INTRON Pxn
2R	1072483	2R_1072483_SNP [dm3] 2R_5184978_SNP [dm6]	A	G	4.005e^-4	0.831	INTRON Nipped-A
3R	25762081	3R_25762081_SNP [dm3] 3R_29936359_SNP [dm6]	C	G	4.006e^-4	0.831	SYNONYMOUS_CODING CG15523 UPSTREAM eIF2B-alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25252167	3R_25252167_DEL [dm3] 3R_29426445_DEL [dm6]	TACTTA	T	4.007e^-4	0.831	INTRON Ptp99A	TF binding site BDTNP1_TFBS_dl
2R	15433139	2R_15433139_SNP [dm3] 2R_19545634_SNP [dm6]	G	C	4.009e^-4	0.831	INTRON sm	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	24793430	3R_24793430_SNP [dm3] 3R_28967708_SNP [dm6]	A	G	4.018e^-4	0.831	INTRON CG14521
3R	15793314	3R_15793314_SNP [dm3] 3R_19967592_SNP [dm6]	A	T	4.019e^-4	0.831	INTRON Hs6st
2L	10905292	2L_10905292_SNP [dm3] 2L_10905292_SNP [dm6]	T	C	4.028e^-4	0.831	DOWNSTREAM CG7309 INTERGENIC
2L	11081144	2L_11081144_SNP [dm3] 2L_11081144_SNP [dm6]	T	C	4.034e^-4	0.831	INTRON AstC
X	8453965	X_8453965_SNP [dm3] X_8559932_SNP [dm6]	G	T	4.035e^-4	0.831	NON_SYNONYMOUS_CODING CG12112 UPSTREAM Trf4-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	6673714	2L_6673714_SNP [dm3] 2L_6673714_SNP [dm6]	T	A	4.048e^-4	0.831	UPSTREAM CG34310 & 1 other DOWNSTREAM cort INTRON cup & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	18540196	3R_18540196_SNP [dm3] 3R_22714474_SNP [dm6]	T	C	4.050e^-4	0.831	SPLICE_SITE_REGION wge SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad
3R	14708105	3R_14708105_SNP [dm3] 3R_18882383_SNP [dm6]	A	G	4.055e^-4	0.831	INTERGENIC
2R	13797553	2R_13797553_SNP [dm3] 2R_17910048_SNP [dm6]	G	A	4.058e^-4	0.831	INTRON Elk
X	18370409	X_18370409_SNP [dm3] X_18476376_SNP [dm6]	A	T	4.058e^-4	0.831	INTRON CG32547
3L	6822359	3L_6822359_SNP [dm3] 3L_6829259_SNP [dm6]	T	A	4.060e^-4	0.831	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18942667	2R_18942667_SNP [dm3] 2R_23055144_SNP [dm6]	C	T	4.060e^-4	0.831	UPSTREAM CG44252 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8955021	2L_8955021_SNP [dm3] 2L_8955021_SNP [dm6]	G	A	4.066e^-4	0.831	SYNONYMOUS_CODING CG31886	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	1100956	2R_1100956_DEL [dm3] 2R_5213451_DEL [dm6]	GTAGTG	G	4.071e^-4	0.831	INTRON Nipped-A	transposable element FlyBase
2L	11505908	2L_11505908_SNP [dm3] 2L_11505908_SNP [dm6]	G	A	4.074e^-4	0.831	INTRON spz4
2R	1781159	2R_1781159_SNP [dm3] 2R_5893654_SNP [dm6]	A	T	4.089e^-4	0.834	UPSTREAM CG43366 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	10700289	2R_10700289_SNP [dm3] 2R_14812784_SNP [dm6]	G	A	4.101e^-4	0.834	INTERGENIC	regulatory region REDfly_CRMs
2L	7789967	2L_7789967_SNP [dm3] 2L_7789967_SNP [dm6]	G	C	4.106e^-4	0.834	INTRON CG7149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	11329751	3L_11329751_SNP [dm3] 3L_11336651_SNP [dm6]	G	T	4.111e^-4	0.834	INTERGENIC
3R	25139345	3R_25139345_SNP [dm3] 3R_29313623_SNP [dm6]	A	G	4.113e^-4	0.834	INTERGENIC	TF binding site mE1_TFBS_bab1
2L	14014232	2L_14014232_SNP [dm3] 2L_14014232_SNP [dm6]	G	T	4.115e^-4	0.834	INTRON bgm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	1743531	2L_1743531_SNP [dm3] 2L_1743531_SNP [dm6]	G	A	4.117e^-4	0.834	SYNONYMOUS_CODING CG17646
3R	26588391	3R_26588391_SNP [dm3] 3R_30762669_SNP [dm6]	C	T	4.138e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3L	5338140	3L_5338140_SNP [dm3] 3L_5345040_SNP [dm6]	A	G	4.148e^-4	0.838	SYNONYMOUS_CODING lama	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11505909	2L_11505909_SNP [dm3] 2L_11505909_SNP [dm6]	T	G	4.171e^-4	0.842	INTRON spz4
3L	3503405	3L_3503405_SNP [dm3] 3L_3503405_SNP [dm6]	G	A	4.179e^-4	0.843	INTRON CG42324
2L	11494079	2L_11494079_SNP [dm3] 2L_11494079_SNP [dm6]	G	C	4.192e^-4	0.844	INTERGENIC
3R	24027243	3R_24027243_SNP [dm3] 3R_28201521_SNP [dm6]	C	A	4.196e^-4	0.844	INTRON CG34354
X	12958087	X_12958087_SNP [dm3] X_13064054_SNP [dm6]	C	G	4.201e^-4	0.845	INTRON rad
3R	22995295	3R_22995295_SNP [dm3] 3R_27169573_SNP [dm6]	C	T	4.209e^-4	0.845	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	10097682	2L_10097682_SNP [dm3] 2L_10097682_SNP [dm6]	G	A	4.217e^-4	0.845	INTRON CG34109 & 1 other
3R	22717970	3R_22717970_SNP [dm3] 3R_26892248_SNP [dm6]	A	G	4.225e^-4	0.845	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	25228018	3R_25228018_SNP [dm3] 3R_29402296_SNP [dm6]	T	A	4.227e^-4	0.845	INTRON Ptp99A
3R	24903993	3R_24903993_SNP [dm3] 3R_29078271_SNP [dm6]	C	G	4.228e^-4	0.845	INTRON CG11873
3L	1257155	3L_1257155_SNP [dm3] 3L_1257155_SNP [dm6]	G	A	4.238e^-4	0.846	UTR_5_PRIME CG9134
3R	26048902	3R_26048902_SNP [dm3] 3R_30223180_SNP [dm6]	G	C	4.254e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3466452	2L_3466452_SNP [dm3] 2L_3466452_SNP [dm6]	C	A	4.258e^-4	0.846	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	3466453	2L_3466453_SNP [dm3] 2L_3466453_SNP [dm6]	A	G	4.258e^-4	0.846	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	13894707	3R_13894707_SNP [dm3] 3R_18068985_SNP [dm6]	T	A	4.271e^-4	0.846	INTERGENIC
3R	26956016	3R_26956016_SNP [dm3] 3R_31130294_SNP [dm6]	T	C	4.275e^-4	0.846	SYNONYMOUS_CODING CG15556	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	13494013	3R_13494013_SNP [dm3] 3R_17668291_SNP [dm6]	T	A	4.276e^-4	0.846	DOWNSTREAM CR45045 & 2 others INTRON CG14322	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv
2L	17241343	2L_17241343_SNP [dm3] 2L_17241343_SNP [dm6]	A	G	4.278e^-4	0.846	INTRON beat-IIIc
3L	1084550	3L_1084550_SNP [dm3] 3L_1084550_SNP [dm6]	C	A	4.286e^-4	0.846	INTRON bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19034459	2R_19034459_SNP [dm3] 2R_23146936_SNP [dm6]	G	T	4.287e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	1565426	3R_1565426_SNP [dm3] 3R_5739704_SNP [dm6]	G	T	4.293e^-4	0.846	NON_SYNONYMOUS_CODING Sym
2R	19886194	2R_19886194_SNP [dm3] 2R_23998671_SNP [dm6]	A	C	4.297e^-4	0.846	SPLICE_SITE_REGION Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
2L	7097116	2L_7097116_SNP [dm3] 2L_7097116_SNP [dm6]	C	T	4.299e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	1433383	3L_1433383_SNP [dm3] 3L_1433383_SNP [dm6]	G	C	4.303e^-4	0.846	DOWNSTREAM SA-2 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20558577	X_20558577_SNP [dm3] X_20687550_SNP [dm6]	G	A	4.305e^-4	0.846	EXON CR43862	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	11132623	3L_11132623_SNP [dm3] 3L_11139523_SNP [dm6]	A	G	4.309e^-4	0.846	INTRON CG32082
2R	2409864	2R_2409864_SNP [dm3] 2R_6522359_SNP [dm6]	A	C	4.316e^-4	0.846	INTRON jing
3L	8147247	3L_8147247_SNP [dm3] 3L_8154147_SNP [dm6]	A	G	4.321e^-4	0.846	DOWNSTREAM CG42445 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25554954	3R_25554954_SNP [dm3] 3R_29729232_SNP [dm6]	A	G	4.321e^-4	0.846	INTRON Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	7097041	2L_7097041_SNP [dm3] 2L_7097041_SNP [dm6]	A	T	4.322e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	5950537	3R_5950537_SNP [dm3] 3R_10124815_SNP [dm6]	A	C	4.329e^-4	0.846	INTRON knk
2R	12557210	2R_12557210_SNP [dm3] 2R_16669705_SNP [dm6]	A	G	4.340e^-4	0.846	UPSTREAM CG34457 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17507507	X_17507507_SNP [dm3] X_17613474_SNP [dm6]	T	A	4.355e^-4	0.846	INTERGENIC
2R	12186085	2R_12186085_SNP [dm3] 2R_16298580_SNP [dm6]	T	G	4.356e^-4	0.846	NON_SYNONYMOUS_START CG43265
3L	6096086	3L_6096086_SNP [dm3] 3L_6102986_SNP [dm6]	A	T	4.362e^-4	0.846	INTRON Ets65A
2L	15101358	2L_15101358_SNP [dm3] 2L_15101358_SNP [dm6]	A	G	4.366e^-4	0.846	INTERGENIC
3L	5621901	3L_5621901_SNP [dm3] 3L_5628801_SNP [dm6]	C	A	4.374e^-4	0.846	INTERGENIC	TF binding site mE1_TFBS_inv
2L	17958261	2L_17958261_SNP [dm3] 2L_17958261_SNP [dm6]	A	C	4.374e^-4	0.846	INTERGENIC
2L	10090505	2L_10090505_SNP [dm3] 2L_10090505_SNP [dm6]	C	T	4.374e^-4	0.846	DOWNSTREAM CG13133 INTRON CG44153
3R	22491550	3R_22491550_SNP [dm3] 3R_26665828_SNP [dm6]	A	C	4.387e^-4	0.846	INTRON beat-VII
3R	26907890	3R_26907890_SNP [dm3] 3R_31082168_SNP [dm6]	G	C	4.388e^-4	0.846	SYNONYMOUS_CODING Sox100B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1264760	3L_1264760_SNP [dm3] 3L_1264760_SNP [dm6]	A	G	4.391e^-4	0.846	UPSTREAM CG9134 INTRON CG9134
3R	14524243	3R_14524243_SNP [dm3] 3R_18698521_SNP [dm6]	T	C	4.393e^-4	0.846	INTERGENIC
2L	4736273	2L_4736273_SNP [dm3] 2L_4736273_SNP [dm6]	A	G	4.394e^-4	0.846	SYNONYMOUS_CODING CG15630
X	17576362	X_17576362_SNP [dm3] X_17682329_SNP [dm6]	G	C	4.394e^-4	0.846	INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	21551577	3R_21551577_SNP [dm3] 3R_25725855_SNP [dm6]	A	T	4.409e^-4	0.846	INTRON LpR2
X	5007294	X_5007294_SNP [dm3] X_5113261_SNP [dm6]	T	A	4.420e^-4	0.846	INTRON rg & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9128545	2R_9128545_SNP [dm3] 2R_13241040_SNP [dm6]	T	C	4.421e^-4	0.846	DOWNSTREAM GstE14 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19390794	2R_19390794_SNP [dm3] 2R_23503271_SNP [dm6]	T	G	4.426e^-4	0.846	UTR_5_PRIME CG13559
3R	11191092	3R_11191092_SNP [dm3] 3R_15365370_SNP [dm6]	G	A	4.429e^-4	0.846	INTRON CG34404	TF binding site mE1_TFBS_chinmo
X	13037825	X_13037825_SNP [dm3] X_13143792_SNP [dm6]	A	T	4.433e^-4	0.846	INTRON CG32645	TF binding site BDTNP1_TFBS_dl
3L	14345669	3L_14345669_SNP [dm3] 3L_14352569_SNP [dm6]	C	T	4.434e^-4	0.846	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1713018	2R_1713018_SNP [dm3] 2R_5825513_SNP [dm6]	T	G	4.438e^-4	0.846	INTRON dpr12
2R	6438559	2R_6438559_SNP [dm3] 2R_10551054_SNP [dm6]	A	G	4.446e^-4	0.846	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	10154765	X_10154765_SNP [dm3] X_10260732_SNP [dm6]	T	A	4.450e^-4	0.846	INTRON CR43959 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17279242	3L_17279242_SNP [dm3] 3L_17286142_SNP [dm6]	A	C	4.452e^-4	0.846	INTERGENIC
2R	12932843	2R_12932843_SNP [dm3] 2R_17045338_SNP [dm6]	A	T	4.455e^-4	0.846	NON_SYNONYMOUS_CODING CG9640 DOWNSTREAM RhoGEF2	TF binding site mE1_TFBS_sens
3L	12773192	3L_12773192_SNP [dm3] 3L_12780092_SNP [dm6]	C	T	4.457e^-4	0.846	SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
3R	11426270	3R_11426270_SNP [dm3] 3R_15600548_SNP [dm6]	G	A	4.464e^-4	0.846	INTERGENIC
X	21995316	X_21995316_SNP [dm3] X_22593480_SNP [dm6]	G	T	4.466e^-4	0.846	INTRON Cda4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26391712	3R_26391712_SNP [dm3] 3R_30565990_SNP [dm6]	A	C	4.466e^-4	0.846	INTRON tmod
2L	4753782	2L_4753782_SNP [dm3] 2L_4753782_SNP [dm6]	A	T	4.481e^-4	0.846	INTRON CG15630
3L	3546379	3L_3546379_SNP [dm3] 3L_3546379_SNP [dm6]	G	A	4.484e^-4	0.846	INTRON Eip63E
2L	17222475	2L_17222475_SNP [dm3] 2L_17222475_SNP [dm6]	G	A	4.484e^-4	0.846	INTRON beat-IIIc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	15792684	3R_15792684_SNP [dm3] 3R_19966962_SNP [dm6]	T	A	4.487e^-4	0.846	INTRON Hs6st
3L	10457061	3L_10457061_SNP [dm3] 3L_10463961_SNP [dm6]	G	T	4.498e^-4	0.846	NON_SYNONYMOUS_CODING CG32061 UPSTREAM Gem3	TF binding site mE1_TFBS_bab1
X	17577622	X_17577622_SNP [dm3] X_17683589_SNP [dm6]	A	T	4.502e^-4	0.846	UPSTREAM chas INTRON chas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10250676	3R_10250676_SNP [dm3] 3R_14424954_SNP [dm6]	G	T	4.510e^-4	0.846	INTRON cv-c
3R	13460341	3R_13460341_SNP [dm3] 3R_17634619_SNP [dm6]	C	T	4.518e^-4	0.846	INTRON CG43175
2L	15731230	2L_15731230_SNP [dm3] 2L_15731230_SNP [dm6]	G	A	4.520e^-4	0.846	UTR_5_PRIME CycE INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12555608	2R_12555608_SNP [dm3] 2R_16668103_SNP [dm6]	A	C	4.523e^-4	0.846	UPSTREAM Picot INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1818222	3L_1818222_SNP [dm3] 3L_1818222_SNP [dm6]	T	A	4.524e^-4	0.846	INTRON GV1

By genomic position
Variant impact
Gene name

AbdominaPigmentT6 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results