DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.802e^-10)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.0235	0.0811

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2623 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	1206780	3R_1206780_DEL [dm3] 3R_5381058_DEL [dm6]	AA	A	1.567e^-7	0.294	INTRON kkv
X	9121129	X_9121129_SNP [dm3] X_9227096_SNP [dm6]	C	T	5.813e^-7	0.328	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
3L	1271873	3L_1271873_SNP [dm3] 3L_1271873_SNP [dm6]	T	C	9.637e^-7	0.328	INTRON CG9134
X	9121177	X_9121177_SNP [dm3] X_9227144_SNP [dm6]	C	T	9.800e^-7	0.328	UTR_5_PRIME Gr8a DOWNSTREAM CG15370
3L	8878124	3L_8878124_SNP [dm3] 3L_8885024_SNP [dm6]	C	T	1.176e^-6	0.328	INTRON dally
X	9120922	X_9120922_SNP [dm3] X_9226889_SNP [dm6]	G	A	1.260e^-6	0.328	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
X	9121338	X_9121338_SNP [dm3] X_9227305_SNP [dm6]	A	G	1.368e^-6	0.328	NON_SYNONYMOUS_CODING Gr8a DOWNSTREAM CG15370
3R	14574537	3R_14574537_SNP [dm3] 3R_18748815_SNP [dm6]	T	C	1.401e^-6	0.328	SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad
2R	17335778	2R_17335778_SNP [dm3] 2R_21448273_SNP [dm6]	T	G	1.650e^-6	0.344	INTRON Sdc
3L	9295771	3L_9295771_MNP [dm3] 3L_9302671_MNP [dm6]	CTG	ACA	1.935e^-6	0.363	INTERGENIC
3R	22820203	3R_22820203_SNP [dm3] 3R_26994481_SNP [dm6]	C	T	2.162e^-6	0.369	UPSTREAM TwdlC INTERGENIC
2R	15490188	2R_15490188_SNP [dm3] 2R_19602683_SNP [dm6]	G	A	2.868e^-6	0.448	UPSTREAM CR44473 INTRON sm
2L	1691223	2L_1691223_SNP [dm3] 2L_1691223_SNP [dm6]	T	A	3.714e^-6	0.508	INTRON chinmo
2R	17335781	2R_17335781_SNP [dm3] 2R_21448276_SNP [dm6]	G	A	3.795e^-6	0.508	INTRON Sdc
3R	1533064	3R_1533064_SNP [dm3] 3R_5707342_SNP [dm6]	G	A	4.426e^-6	0.553	SYNONYMOUS_CODING plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9121094	X_9121094_SNP [dm3] X_9227061_SNP [dm6]	T	C	4.990e^-6	0.585	UPSTREAM Gr8a DOWNSTREAM CG15370 INTERGENIC
3R	5923300	3R_5923300_SNP [dm3] 3R_10097578_SNP [dm6]	T	G	6.031e^-6	0.585	EXON CR43459
3L	10151119	3L_10151119_SNP [dm3] 3L_10158019_SNP [dm6]	G	A	6.180e^-6	0.585	INTRON dpr10
3L	1381936	3L_1381936_SNP [dm3] 3L_1381936_SNP [dm6]	G	C	6.416e^-6	0.585	INTRON Ptp61F & 1 other
3R	26062475	3R_26062475_SNP [dm3] 3R_30236753_SNP [dm6]	A	C	7.343e^-6	0.585	DOWNSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	15101358	2L_15101358_SNP [dm3] 2L_15101358_SNP [dm6]	A	G	7.620e^-6	0.585	INTERGENIC
2L	3457244	2L_3457244_SNP [dm3] 2L_3457244_SNP [dm6]	C	T	7.626e^-6	0.585	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	7053563	3R_7053563_SNP [dm3] 3R_11227841_SNP [dm6]	A	G	7.848e^-6	0.585	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	1271833	3L_1271833_SNP [dm3] 3L_1271833_SNP [dm6]	A	C	7.903e^-6	0.585	INTRON CG9134
3L	10157408	3L_10157408_SNP [dm3] 3L_10164308_SNP [dm6]	T	C	7.954e^-6	0.585	INTRON dpr10
3R	22820145	3R_22820145_SNP [dm3] 3R_26994423_SNP [dm6]	G	A	8.750e^-6	0.585	UPSTREAM TwdlC INTERGENIC
2R	19034644	2R_19034644_SNP [dm3] 2R_23147121_SNP [dm6]	A	C	9.116e^-6	0.585	INTERGENIC
3L	11453823	3L_11453823_SNP [dm3] 3L_11460723_SNP [dm6]	C	T	9.374e^-6	0.585	INTERGENIC	TF binding site mE1_TFBS_inv
3L	4316331	3L_4316331_SNP [dm3] 3L_4316331_SNP [dm6]	A	G	9.776e^-6	0.585	SYNONYMOUS_CODING Claspin
2R	19887557	2R_19887557_SNP [dm3] 2R_24000034_SNP [dm6]	C	T	9.993e^-6	0.585	SYNONYMOUS_CODING Unc-89	TF binding site mE1_TFBS_chinmo
2R	16688646	2R_16688646_SNP [dm3] 2R_20801141_SNP [dm6]	G	C	1.011e^-5	0.585	INTERGENIC
2R	16688318	2R_16688318_SNP [dm3] 2R_20800813_SNP [dm6]	A	G	1.022e^-5	0.585	INTERGENIC
2R	16688595	2R_16688595_SNP [dm3] 2R_20801090_SNP [dm6]	A	T	1.049e^-5	0.585	INTERGENIC
3L	18993186	3L_18993186_SNP [dm3] 3L_19000086_SNP [dm6]	A	G	1.060e^-5	0.585	SYNONYMOUS_CODING CG3808 DOWNSTREAM CG18136	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
2R	16793853	2R_16793853_SNP [dm3] 2R_20906348_SNP [dm6]	C	G	1.135e^-5	0.593	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	9415857	2L_9415857_SNP [dm3] 2L_9415857_SNP [dm6]	C	T	1.139e^-5	0.593	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	5937469	X_5937469_SNP [dm3] X_6043436_SNP [dm6]	T	C	1.203e^-5	0.596	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14623430	3R_14623430_SNP [dm3] 3R_18797708_SNP [dm6]	A	G	1.208e^-5	0.596	INTERGENIC
2L	15101580	2L_15101580_SNP [dm3] 2L_15101580_SNP [dm6]	T	A	1.333e^-5	0.606	INTERGENIC
3R	1211607	3R_1211607_SNP [dm3] 3R_5385885_SNP [dm6]	A	G	1.333e^-5	0.606	DOWNSTREAM CG14668 INTRON kkv
3L	11466972	3L_11466972_SNP [dm3] 3L_11473872_SNP [dm6]	G	A	1.358e^-5	0.606	SYNONYMOUS_CODING Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	17193468	3L_17193468_SNP [dm3] 3L_17200368_SNP [dm6]	G	A	1.429e^-5	0.606	INTRON Rbp6
X	10959506	X_10959506_SNP [dm3] X_11065473_SNP [dm6]	C	T	1.443e^-5	0.606	UPSTREAM CR45614 INTERGENIC
3L	433714	3L_433714_SNP [dm3] 3L_433714_SNP [dm6]	C	T	1.467e^-5	0.606	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10154254	3L_10154254_SNP [dm3] 3L_10161154_SNP [dm6]	C	T	1.555e^-5	0.606	INTRON dpr10
3L	5552263	3L_5552263_SNP [dm3] 3L_5559163_SNP [dm6]	G	A	1.569e^-5	0.606	DOWNSTREAM sinu INTERGENIC
2R	18700305	2R_18700305_SNP [dm3] 2R_22812800_SNP [dm6]	G	C	1.578e^-5	0.606	SYNONYMOUS_CODING stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11214599	3R_11214599_SNP [dm3] 3R_15388877_SNP [dm6]	G	A	1.602e^-5	0.606	SYNONYMOUS_CODING Rbp UTR_3_PRIME Rbp	TF binding site mE1_TFBS_chinmo
2R	16795898	2R_16795898_SNP [dm3] 2R_20908393_SNP [dm6]	G	C	1.669e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	16794432	2R_16794432_SNP [dm3] 2R_20906927_SNP [dm6]	T	C	1.679e^-5	0.606	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4642239	3L_4642239_SNP [dm3] 3L_4642239_SNP [dm6]	C	T	1.690e^-5	0.606	UTR_3_PRIME axo INTRON axo
2L	5880924	2L_5880924_SNP [dm3] 2L_5880924_SNP [dm6]	G	A	1.796e^-5	0.606	INTERGENIC
X	5937477	X_5937477_SNP [dm3] X_6043444_SNP [dm6]	C	T	1.825e^-5	0.606	SYNONYMOUS_CODING CG5937	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3254648	X_3254648_SNP [dm3] X_3360615_SNP [dm6]	A	T	1.850e^-5	0.606	INTERGENIC
2R	14493156	2R_14493156_SNP [dm3] 2R_18605651_SNP [dm6]	A	C	1.862e^-5	0.606	INTRON GEFmeso
3L	11466948	3L_11466948_SNP [dm3] 3L_11473848_SNP [dm6]	T	C	1.898e^-5	0.606	SYNONYMOUS_CODING Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	1193279	3R_1193279_SNP [dm3] 3R_5367557_SNP [dm6]	A	C	1.939e^-5	0.606	UPSTREAM CR44103 INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	22413088	3R_22413088_SNP [dm3] 3R_26587366_SNP [dm6]	C	T	1.946e^-5	0.606	UTR_3_PRIME scrib INTRON scrib
3L	9984425	3L_9984425_SNP [dm3] 3L_9991325_SNP [dm6]	G	A	2.089e^-5	0.606	INTRON dpr6
2L	20829094	2L_20829094_INS [dm3] 2L_20829094_INS [dm6]	T	TTGTTATATAGGCTTAGGCA...	2.134e^-5	0.606	UPSTREAM CG31673 INTERGENIC
2L	5303348	2L_5303348_SNP [dm3] 2L_5303348_SNP [dm6]	A	G	2.147e^-5	0.606	INTRON vri	regulatory region FlyBase
2R	17111525	2R_17111525_SNP [dm3] 2R_21224020_SNP [dm6]	A	T	2.161e^-5	0.606	UPSTREAM ASPP INTRON ASPP
2R	14847390	2R_14847390_SNP [dm3] 2R_18959885_SNP [dm6]	T	A	2.205e^-5	0.606	DOWNSTREAM sano INTERGENIC
2L	9415832	2L_9415832_SNP [dm3] 2L_9415832_SNP [dm6]	A	G	2.205e^-5	0.606	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	26543398	3R_26543398_SNP [dm3] 3R_30717676_SNP [dm6]	A	G	2.254e^-5	0.606	INTERGENIC
3R	16494952	3R_16494952_SNP [dm3] 3R_20669230_SNP [dm6]	G	C	2.277e^-5	0.606	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9592577	3L_9592577_SNP [dm3] 3L_9599477_SNP [dm6]	G	C	2.299e^-5	0.606	SYNONYMOUS_CODING CG3222	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3254671	X_3254671_SNP [dm3] X_3360638_SNP [dm6]	C	T	2.345e^-5	0.606	INTERGENIC
X	3254674	X_3254674_SNP [dm3] X_3360641_SNP [dm6]	T	A	2.355e^-5	0.606	INTERGENIC
2L	18648819	2L_18648819_SNP [dm3] 2L_18648819_SNP [dm6]	A	G	2.361e^-5	0.606	INTRON MESR3
3L	16274820	3L_16274820_SNP [dm3] 3L_16281720_SNP [dm6]	C	T	2.414e^-5	0.606	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19827753	2L_19827753_SNP [dm3] 2L_19827753_SNP [dm6]	A	T	2.445e^-5	0.606	SYNONYMOUS_CODING sick START_GAINED sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5924844	3R_5924844_SNP [dm3] 3R_10099122_SNP [dm6]	T	G	2.487e^-5	0.606	UPSTREAM mir-277 EXON CR43459
2R	16798524	2R_16798524_DEL [dm3] 2R_20911019_DEL [dm6]	TTATTACATAAT...	T	2.509e^-5	0.606	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15099952	2R_15099952_SNP [dm3] 2R_19212447_SNP [dm6]	T	A	2.524e^-5	0.606	INTRON hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	1534701	3R_1534701_SNP [dm3] 3R_5708979_SNP [dm6]	C	G	2.545e^-5	0.606	SYNONYMOUS_CODING plx
3R	16458813	3R_16458813_SNP [dm3] 3R_20633091_SNP [dm6]	A	G	2.587e^-5	0.606	SYNONYMOUS_CODING Pi3K92E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11487165	2L_11487165_SNP [dm3] 2L_11487165_SNP [dm6]	A	G	2.675e^-5	0.606	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	1208040	3R_1208040_SNP [dm3] 3R_5382318_SNP [dm6]	G	T	2.683e^-5	0.606	SYNONYMOUS_CODING kkv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5556250	3L_5556250_SNP [dm3] 3L_5563150_SNP [dm6]	G	A	2.748e^-5	0.606	SYNONYMOUS_CODING Sucb UPSTREAM Sras	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	26338229	3R_26338229_SNP [dm3] 3R_30512507_SNP [dm6]	G	A	2.857e^-5	0.606	UPSTREAM PH4alphaNE2 INTRON CG31524
2R	17419003	2R_17419003_SNP [dm3] 2R_21531498_SNP [dm6]	C	A	2.866e^-5	0.606	DOWNSTREAM CR44725 INTRON Egfr	TF binding site mE1_TFBS_chinmo
2R	16350232	2R_16350232_SNP [dm3] 2R_20462727_SNP [dm6]	T	A	2.910e^-5	0.606	INTRON CG12484
3R	26553128	3R_26553128_SNP [dm3] 3R_30727406_SNP [dm6]	C	G	3.078e^-5	0.606	NON_SYNONYMOUS_CODING CG1340	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3457243	2L_3457243_SNP [dm3] 2L_3457243_SNP [dm6]	A	T	3.135e^-5	0.606	UPSTREAM Sec5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
3R	13515105	3R_13515105_SNP [dm3] 3R_17689383_SNP [dm6]	G	A	3.212e^-5	0.606	UTR_3_PRIME osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	1211046	3R_1211046_SNP [dm3] 3R_5385324_SNP [dm6]	T	G	3.227e^-5	0.606	INTRON kkv
2R	13415058	2R_13415058_SNP [dm3] 2R_17527553_SNP [dm6]	A	C	3.234e^-5	0.606	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
3L	5030698	3L_5030698_INS [dm3] 3L_5030698_INS [dm6]	T	TTT	3.236e^-5	0.606	INTRON Con
2L	18828769	2L_18828769_SNP [dm3] 2L_18828769_SNP [dm6]	C	T	3.266e^-5	0.606	SYNONYMOUS_CODING CG17322 DOWNSTREAM CG17597
X	16615175	X_16615175_SNP [dm3] X_16721142_SNP [dm6]	T	A	3.304e^-5	0.606	UPSTREAM CG32572 INTRON CG34325
3L	11466991	3L_11466991_SNP [dm3] 3L_11473891_SNP [dm6]	T	A	3.394e^-5	0.606	UTR_3_PRIME Vha16-3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	1534677	3R_1534677_SNP [dm3] 3R_5708955_SNP [dm6]	A	G	3.401e^-5	0.606	SYNONYMOUS_CODING plx
2L	1885826	2L_1885826_SNP [dm3] 2L_1885826_SNP [dm6]	G	A	3.421e^-5	0.606	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	16350185	2R_16350185_DEL [dm3] 2R_20462680_DEL [dm6]	CAGCACAGTTTC...	C	3.450e^-5	0.606	INTRON CG12484
3L	1525287	3L_1525287_SNP [dm3] 3L_1525287_SNP [dm6]	A	G	3.492e^-5	0.606	SPLICE_SITE_REGION CG12090 SYNONYMOUS_CODING CG12090
2R	11400626	2R_11400626_SNP [dm3] 2R_15513121_SNP [dm6]	T	A	3.493e^-5	0.606	UPSTREAM GalNAc-T1 INTRON GalNAc-T1
3R	17063120	3R_17063120_SNP [dm3] 3R_21237398_SNP [dm6]	T	C	3.512e^-5	0.606	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
2R	16795885	2R_16795885_SNP [dm3] 2R_20908380_SNP [dm6]	T	C	3.514e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	16350212	2R_16350212_SNP [dm3] 2R_20462707_SNP [dm6]	A	C	3.543e^-5	0.606	INTRON CG12484
2R	16350220	2R_16350220_DEL [dm3] 2R_20462715_DEL [dm6]	CTAG	C	3.543e^-5	0.606	INTRON CG12484
2R	16350227	2R_16350227_DEL [dm3] 2R_20462722_DEL [dm6]	AC	A	3.543e^-5	0.606	INTRON CG12484
3L	433751	3L_433751_SNP [dm3] 3L_433751_SNP [dm6]	C	T	3.544e^-5	0.606	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13168957	3L_13168957_SNP [dm3] 3L_13175857_SNP [dm6]	T	C	3.560e^-5	0.606	SYNONYMOUS_CODING snky
X	3254549	X_3254549_SNP [dm3] X_3360516_SNP [dm6]	A	G	3.595e^-5	0.606	INTERGENIC
2L	11116278	2L_11116278_SNP [dm3] 2L_11116278_SNP [dm6]	C	T	3.596e^-5	0.606	DOWNSTREAM Gr32a INTRON CG6230	TF binding site mE1_TFBS_cad
3L	8880023	3L_8880023_SNP [dm3] 3L_8886923_SNP [dm6]	T	C	3.637e^-5	0.606	SYNONYMOUS_CODING dally
3R	1206701	3R_1206701_SNP [dm3] 3R_5380979_SNP [dm6]	T	G	3.659e^-5	0.606	INTRON kkv
3R	22822290	3R_22822290_SNP [dm3] 3R_26996568_SNP [dm6]	T	C	3.672e^-5	0.606	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
2R	13415363	2R_13415363_SNP [dm3] 2R_17527858_SNP [dm6]	G	C	3.684e^-5	0.606	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
2R	16798499	2R_16798499_SNP [dm3] 2R_20910994_SNP [dm6]	C	T	3.712e^-5	0.606	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9295605	3L_9295605_SNP [dm3] 3L_9302505_SNP [dm6]	T	C	3.726e^-5	0.606	INTERGENIC
3R	10652762	3R_10652762_SNP [dm3] 3R_14827040_SNP [dm6]	C	T	3.763e^-5	0.606	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3256427	X_3256427_SNP [dm3] X_3362394_SNP [dm6]	T	A	3.890e^-5	0.606	INTERGENIC
3R	25622957	3R_25622957_SNP [dm3] 3R_29797235_SNP [dm6]	G	A	3.908e^-5	0.606	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21671428	3R_21671428_SNP [dm3] 3R_25845706_SNP [dm6]	C	T	3.913e^-5	0.606	EXON CR45654
3R	21006399	3R_21006399_SNP [dm3] 3R_25180677_SNP [dm6]	A	C	3.959e^-5	0.606	INTRON lobo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10160379	3L_10160379_SNP [dm3] 3L_10167279_SNP [dm6]	C	G	3.977e^-5	0.606	UPSTREAM CG6628 INTRON dpr10
2R	13415772	2R_13415772_SNP [dm3] 2R_17528267_SNP [dm6]	T	C	4.047e^-5	0.606	INTRON Patronin
3R	17666229	3R_17666229_SNP [dm3] 3R_21840507_SNP [dm6]	C	T	4.081e^-5	0.606	INTERGENIC
3L	6829407	3L_6829407_SNP [dm3] 3L_6836307_SNP [dm6]	T	A	4.087e^-5	0.606	INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	16795811	2R_16795811_SNP [dm3] 2R_20908306_SNP [dm6]	T	C	4.162e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10154258	3L_10154258_SNP [dm3] 3L_10161158_SNP [dm6]	T	A	4.171e^-5	0.606	INTRON dpr10
X	3254679	X_3254679_SNP [dm3] X_3360646_SNP [dm6]	A	C	4.173e^-5	0.606	INTERGENIC
3L	9296513	3L_9296513_SNP [dm3] 3L_9303413_SNP [dm6]	A	T	4.210e^-5	0.606	INTERGENIC
2L	11487154	2L_11487154_DEL [dm3] 2L_11487154_DEL [dm6]	AA	A	4.283e^-5	0.606	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8401876	3L_8401876_SNP [dm3] 3L_8408776_SNP [dm6]	G	A	4.379e^-5	0.606	SYNONYMOUS_CODING Oseg1
2L	3467212	2L_3467212_SNP [dm3] 2L_3467212_SNP [dm6]	T	C	4.410e^-5	0.606	SYNONYMOUS_CODING Pdsw DOWNSTREAM CG3238	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5213266	X_5213266_SNP [dm3] X_5319233_SNP [dm6]	C	G	4.460e^-5	0.606	NON_SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
2L	9417076	2L_9417076_SNP [dm3] 2L_9417076_SNP [dm6]	A	C	4.514e^-5	0.606	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	9594595	3L_9594595_SNP [dm3] 3L_9601495_SNP [dm6]	T	G	4.525e^-5	0.606	UPSTREAM CG3306 & 1 other INTERGENIC
2R	16794332	2R_16794332_SNP [dm3] 2R_20906827_SNP [dm6]	T	C	4.526e^-5	0.606	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
3R	14093105	3R_14093105_SNP [dm3] 3R_18267383_SNP [dm6]	T	C	4.531e^-5	0.606	UPSTREAM CG18599 INTERGENIC
3L	9594509	3L_9594509_DEL [dm3] 3L_9601409_DEL [dm6]	GGGG	G	4.585e^-5	0.606	UPSTREAM CG3306 & 1 other INTERGENIC
2L	19211110	2L_19211110_SNP [dm3] 2L_19211110_SNP [dm6]	T	C	4.587e^-5	0.606	INTERGENIC
2L	20829064	2L_20829064_SNP [dm3] 2L_20829064_SNP [dm6]	T	C	4.591e^-5	0.606	UPSTREAM CG31673 INTERGENIC
2R	8619858	2R_8619858_SNP [dm3] 2R_12732353_SNP [dm6]	A	G	4.601e^-5	0.606	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	9295603	3L_9295603_SNP [dm3] 3L_9302503_SNP [dm6]	C	T	4.628e^-5	0.606	INTERGENIC
3L	10989956	3L_10989956_SNP [dm3] 3L_10996856_SNP [dm6]	G	A	4.646e^-5	0.606	INTRON klu	TF binding site BDTNP1_TFBS_da
2R	12305000	2R_12305000_SNP [dm3] 2R_16417495_SNP [dm6]	G	A	4.646e^-5	0.606	SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
2L	15546790	2L_15546790_SNP [dm3] 2L_15546790_SNP [dm6]	C	A	4.665e^-5	0.606	UPSTREAM Skadu INTERGENIC
2L	9091386	2L_9091386_SNP [dm3] 2L_9091386_SNP [dm6]	A	T	4.665e^-5	0.606	INTERGENIC
3R	27688981	3R_27688981_SNP [dm3] 3R_31863259_SNP [dm6]	C	T	4.698e^-5	0.606	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19567875	3L_19567875_SNP [dm3] 3L_19574775_SNP [dm6]	G	A	4.717e^-5	0.606	UTR_5_PRIME Shal
3R	24762764	3R_24762764_SNP [dm3] 3R_28937042_SNP [dm6]	G	T	4.747e^-5	0.606	INTRON CG14521
3L	16274823	3L_16274823_SNP [dm3] 3L_16281723_SNP [dm6]	T	A	4.788e^-5	0.606	SYNONYMOUS_CODING CG13049 DOWNSTREAM CG13064	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16795804	2R_16795804_DEL [dm3] 2R_20908299_DEL [dm6]	TACATT	T	4.896e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	969281	3L_969281_SNP [dm3] 3L_969281_SNP [dm6]	G	T	4.943e^-5	0.606	INTRON Glut1	TF binding site mE1_TFBS_cad
3R	25622958	3R_25622958_SNP [dm3] 3R_29797236_SNP [dm6]	A	C	4.956e^-5	0.606	SYNONYMOUS_CODING CG7837	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9415771	2L_9415771_SNP [dm3] 2L_9415771_SNP [dm6]	A	C	4.987e^-5	0.606	UPSTREAM Shawl & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3124064	3L_3124064_SNP [dm3] 3L_3124064_SNP [dm6]	A	T	4.989e^-5	0.606	UPSTREAM prominin-like INTRON prominin-like
3R	14574870	3R_14574870_SNP [dm3] 3R_18749148_SNP [dm6]	C	T	5.079e^-5	0.606	SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5847414	X_5847414_SNP [dm3] X_5953381_SNP [dm6]	C	T	5.089e^-5	0.606	SYNONYMOUS_CODING CG6048
2R	9404826	2R_9404826_SNP [dm3] 2R_13517321_SNP [dm6]	A	G	5.098e^-5	0.606	UTR_3_PRIME Vmat & 1 other DOWNSTREAM Vmat
3L	4318941	3L_4318941_SNP [dm3] 3L_4318941_SNP [dm6]	C	T	5.122e^-5	0.606	UTR_5_PRIME CG32250 DOWNSTREAM Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22549473	3R_22549473_SNP [dm3] 3R_26723751_SNP [dm6]	A	T	5.172e^-5	0.606	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19325716	3R_19325716_SNP [dm3] 3R_23499994_SNP [dm6]	T	C	5.184e^-5	0.606	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3254664	X_3254664_SNP [dm3] X_3360631_SNP [dm6]	T	A	5.226e^-5	0.606	INTERGENIC
3R	24043051	3R_24043051_SNP [dm3] 3R_28217329_SNP [dm6]	A	T	5.271e^-5	0.606	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3R	22549474	3R_22549474_SNP [dm3] 3R_26723752_SNP [dm6]	C	G	5.294e^-5	0.606	INTRON CG6420	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11787558	2L_11787558_DEL [dm3] 2L_11787558_DEL [dm6]	ACAC	A	5.327e^-5	0.606	UPSTREAM CG14931 INTERGENIC
2L	10603328	2L_10603328_SNP [dm3] 2L_10603328_SNP [dm6]	G	C	5.337e^-5	0.606	INTRON Trim9
3L	1263887	3L_1263887_SNP [dm3] 3L_1263887_SNP [dm6]	T	C	5.342e^-5	0.606	INTRON CG9134
2L	9465938	2L_9465938_SNP [dm3] 2L_9465938_SNP [dm6]	C	T	5.370e^-5	0.606	INTERGENIC
3L	4642194	3L_4642194_SNP [dm3] 3L_4642194_SNP [dm6]	A	T	5.445e^-5	0.606	DOWNSTREAM axo INTRON axo
3L	21331129	3L_21331129_SNP [dm3] 3L_21338029_SNP [dm6]	T	A	5.503e^-5	0.606	UTR_3_PRIME CG7324 & 1 other DOWNSTREAM CG7324	TF binding site mE1_TFBS_cad
X	10959428	X_10959428_SNP [dm3] X_11065395_SNP [dm6]	A	T	5.535e^-5	0.606	UPSTREAM CR45614 INTERGENIC
3R	20283190	3R_20283190_SNP [dm3] 3R_24457468_SNP [dm6]	G	T	5.592e^-5	0.606	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	1689714	3R_1689714_SNP [dm3] 3R_5863992_SNP [dm6]	C	T	5.638e^-5	0.606	UTR_3_PRIME CG34113
3R	7181435	3R_7181435_SNP [dm3] 3R_11355713_SNP [dm6]	T	C	5.646e^-5	0.606	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6309922	3L_6309922_DEL [dm3] 3L_6316822_DEL [dm6]	CTTATAGGAAAC...	C	5.663e^-5	0.606	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	25883890	3R_25883890_SNP [dm3] 3R_30058168_SNP [dm6]	A	G	5.694e^-5	0.606	UPSTREAM sima DOWNSTREAM CG7950 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	3769280	2R_3769280_SNP [dm3] 2R_7881775_SNP [dm6]	A	T	5.699e^-5	0.606	INTRON Dgk
3R	26543462	3R_26543462_SNP [dm3] 3R_30717740_SNP [dm6]	C	G	5.779e^-5	0.606	INTERGENIC
2R	16801583	2R_16801583_SNP [dm3] 2R_20914078_SNP [dm6]	G	A	5.805e^-5	0.606	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	6841044	3R_6841044_SNP [dm3] 3R_11015322_SNP [dm6]	G	A	5.830e^-5	0.606	INTRON CG34114
2L	9088576	2L_9088576_SNP [dm3] 2L_9088576_SNP [dm6]	T	C	5.902e^-5	0.606	SYNONYMOUS_CODING Toll-4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	1890502	2L_1890502_SNP [dm3] 2L_1890502_SNP [dm6]	T	A	5.915e^-5	0.606	INTRON CG7337
2R	14494343	2R_14494343_SNP [dm3] 2R_18606838_SNP [dm6]	C	A	5.929e^-5	0.606	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	14908179	2R_14908179_SNP [dm3] 2R_19020674_SNP [dm6]	T	C	5.953e^-5	0.606	INTERGENIC
2R	15420871	2R_15420871_SNP [dm3] 2R_19533366_SNP [dm6]	T	A	5.969e^-5	0.606	INTRON sm
2R	16798438	2R_16798438_SNP [dm3] 2R_20910933_SNP [dm6]	T	G	5.984e^-5	0.606	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6756669	2L_6756669_SNP [dm3] 2L_6756669_SNP [dm6]	G	A	6.069e^-5	0.606	DOWNSTREAM CG11221 INTERGENIC
3R	14561648	3R_14561648_SNP [dm3] 3R_18735926_SNP [dm6]	A	C	6.080e^-5	0.606	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14221079	2R_14221079_SNP [dm3] 2R_18333574_SNP [dm6]	G	C	6.082e^-5	0.606	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16796082	2R_16796082_SNP [dm3] 2R_20908577_SNP [dm6]	G	A	6.104e^-5	0.606	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20491224	3R_20491224_SNP [dm3] 3R_24665502_SNP [dm6]	G	T	6.132e^-5	0.606	INTRON slo	regulatory region REDfly_CRMs
2L	15546787	2L_15546787_SNP [dm3] 2L_15546787_SNP [dm6]	T	G	6.149e^-5	0.606	UPSTREAM Skadu INTERGENIC
3L	4308346	3L_4308346_SNP [dm3] 3L_4308346_SNP [dm6]	T	G	6.177e^-5	0.606	UPSTREAM dyl INTERGENIC
2R	19170116	2R_19170116_SNP [dm3] 2R_23282593_SNP [dm6]	T	C	6.206e^-5	0.606	DOWNSTREAM CG3124 INTERGENIC
3R	20283209	3R_20283209_SNP [dm3] 3R_24457487_SNP [dm6]	T	G	6.222e^-5	0.606	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16167543	2R_16167543_SNP [dm3] 2R_20280038_SNP [dm6]	C	T	6.257e^-5	0.606	SYNONYMOUS_CODING CG9090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	805933	2L_805933_SNP [dm3] 2L_805933_SNP [dm6]	C	G	6.308e^-5	0.606	INTERGENIC
2R	18951893	2R_18951893_DEL [dm3] 2R_23064370_DEL [dm6]	ATAAATA	A	6.314e^-5	0.606	UPSTREAM PPO3 & 1 other INTERGENIC	regulatory region REDfly_CRMs
2L	7235648	2L_7235648_SNP [dm3] 2L_7235648_SNP [dm6]	T	G	6.322e^-5	0.606	INTRON Ndae1
X	12400105	X_12400105_SNP [dm3] X_12506072_SNP [dm6]	G	A	6.331e^-5	0.606	INTRON CG2556
3L	4642186	3L_4642186_SNP [dm3] 3L_4642186_SNP [dm6]	G	A	6.362e^-5	0.606	DOWNSTREAM axo INTRON axo
3R	7364271	3R_7364271_SNP [dm3] 3R_11538549_SNP [dm6]	C	A	6.428e^-5	0.607	INTRON dpr4	TF binding site mE1_TFBS_inv
2R	13415154	2R_13415154_SNP [dm3] 2R_17527649_SNP [dm6]	G	A	6.444e^-5	0.607	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_HSA
3L	5534098	3L_5534098_SNP [dm3] 3L_5540998_SNP [dm6]	A	G	6.582e^-5	0.616	SYNONYMOUS_CODING CG10625
2L	3457718	2L_3457718_SNP [dm3] 2L_3457718_SNP [dm6]	G	A	6.600e^-5	0.616	SYNONYMOUS_CODING Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	3457367	2L_3457367_SNP [dm3] 2L_3457367_SNP [dm6]	T	C	6.673e^-5	0.616	START_GAINED Sec5 UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10206543	2R_10206543_SNP [dm3] 2R_14319038_SNP [dm6]	G	C	6.694e^-5	0.616	INTRON Shroom
2L	15737827	2L_15737827_SNP [dm3] 2L_15737827_SNP [dm6]	A	G	6.713e^-5	0.616	NON_SYNONYMOUS_CODING CycE	regulatory region FlyBase REDfly_CRMs
3R	14090990	3R_14090990_SNP [dm3] 3R_18265268_SNP [dm6]	C	A	6.794e^-5	0.616	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14020131	2L_14020131_SNP [dm3] 2L_14020131_SNP [dm6]	G	T	6.821e^-5	0.616	SYNONYMOUS_CODING NimC3 DOWNSTREAM bgm EXON CR44849	TF binding site mE1_TFBS_cad
3L	11175025	3L_11175025_SNP [dm3] 3L_11181925_SNP [dm6]	A	G	6.861e^-5	0.616	INTRON GlcAT-P
2L	9754562	2L_9754562_SNP [dm3] 2L_9754562_SNP [dm6]	G	T	6.892e^-5	0.616	INTERGENIC
3R	24575318	3R_24575318_SNP [dm3] 3R_28749596_SNP [dm6]	A	G	6.896e^-5	0.616	SYNONYMOUS_CODING CG10000
2L	10372484	2L_10372484_SNP [dm3] 2L_10372484_SNP [dm6]	C	A	6.999e^-5	0.616	NON_SYNONYMOUS_CODING rho-5 DOWNSTREAM CG33303	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	14524108	X_14524108_SNP [dm3] X_14630075_SNP [dm6]	A	G	7.020e^-5	0.616	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16794315	2R_16794315_SNP [dm3] 2R_20906810_SNP [dm6]	C	G	7.117e^-5	0.616	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_zfh1
2L	19828494	2L_19828494_SNP [dm3] 2L_19828494_SNP [dm6]	A	G	7.130e^-5	0.616	SYNONYMOUS_CODING sick UTR_5_PRIME sick INTRON sick	TF binding site mE1_TFBS_cad
3L	4308952	3L_4308952_SNP [dm3] 3L_4308952_SNP [dm6]	C	T	7.142e^-5	0.616	INTERGENIC
2R	14492459	2R_14492459_SNP [dm3] 2R_18604954_SNP [dm6]	T	A	7.152e^-5	0.616	INTRON GEFmeso
3L	8882304	3L_8882304_SNP [dm3] 3L_8889204_SNP [dm6]	C	T	7.183e^-5	0.616	SYNONYMOUS_CODING dally UPSTREAM CG43169
3L	15443058	3L_15443058_SNP [dm3] 3L_15449958_SNP [dm6]	T	C	7.211e^-5	0.616	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26338236	3R_26338236_SNP [dm3] 3R_30512514_SNP [dm6]	A	T	7.215e^-5	0.616	UPSTREAM PH4alphaNE2 INTRON CG31524
3L	8880065	3L_8880065_SNP [dm3] 3L_8886965_SNP [dm6]	A	G	7.249e^-5	0.616	SYNONYMOUS_CODING dally
3L	1118849	3L_1118849_SNP [dm3] 3L_1118849_SNP [dm6]	C	T	7.262e^-5	0.616	INTERGENIC	TF binding site mE1_TFBS_cad
X	16660829	X_16660829_SNP [dm3] X_16766796_SNP [dm6]	T	C	7.331e^-5	0.616	INTRON if
2R	16795896	2R_16795896_SNP [dm3] 2R_20908391_SNP [dm6]	C	T	7.343e^-5	0.616	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	3953867	3R_3953867_SNP [dm3] 3R_8128145_SNP [dm6]	T	C	7.370e^-5	0.616	SYNONYMOUS_CODING Gie
2R	16798459	2R_16798459_SNP [dm3] 2R_20910954_SNP [dm6]	C	A	7.389e^-5	0.616	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13210858	2L_13210858_SNP [dm3] 2L_13210858_SNP [dm6]	A	T	7.401e^-5	0.616	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8619847	2R_8619847_DEL [dm3] 2R_12732342_DEL [dm6]	CG	C	7.418e^-5	0.616	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17957182	3R_17957182_SNP [dm3] 3R_22131460_SNP [dm6]	G	A	7.679e^-5	0.628	INTRON CG42390
3R	18946443	3R_18946443_SNP [dm3] 3R_23120721_SNP [dm6]	T	C	7.687e^-5	0.628	SYNONYMOUS_CODING CenB1A UPSTREAM CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14093094	3R_14093094_DEL [dm3] 3R_18267372_DEL [dm6]	AC	A	7.737e^-5	0.628	UPSTREAM CG18599 INTERGENIC
2L	16542448	2L_16542448_SNP [dm3] 2L_16542448_SNP [dm6]	C	G	7.775e^-5	0.628	UPSTREAM CG31816 INTERGENIC
X	3254755	X_3254755_SNP [dm3] X_3360722_SNP [dm6]	T	C	7.801e^-5	0.628	INTERGENIC
3L	5907275	3L_5907275_DEL [dm3] 3L_5914175_DEL [dm6]	AA	A	7.930e^-5	0.628	INTRON CG13288
3L	14188162	3L_14188162_SNP [dm3] 3L_14195062_SNP [dm6]	T	A	7.943e^-5	0.628	INTRON nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5422603	2L_5422603_SNP [dm3] 2L_5422603_SNP [dm6]	A	C	7.984e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1264444	3L_1264444_SNP [dm3] 3L_1264444_SNP [dm6]	C	T	7.990e^-5	0.628	INTRON CG9134
2L	11116286	2L_11116286_SNP [dm3] 2L_11116286_SNP [dm6]	C	A	8.014e^-5	0.628	DOWNSTREAM Gr32a INTRON CG6230	TF binding site mE1_TFBS_cad
3L	9594534	3L_9594534_SNP [dm3] 3L_9601434_SNP [dm6]	T	A	8.111e^-5	0.628	UPSTREAM CG3306 & 1 other INTERGENIC
2L	1738279	2L_1738279_SNP [dm3] 2L_1738279_SNP [dm6]	T	A	8.242e^-5	0.628	INTRON CG17646	TF binding site mE1_TFBS_Trl
3L	10172877	3L_10172877_SNP [dm3] 3L_10179777_SNP [dm6]	A	T	8.289e^-5	0.628	INTRON dpr10
3R	25883894	3R_25883894_SNP [dm3] 3R_30058172_SNP [dm6]	A	C	8.317e^-5	0.628	UPSTREAM sima DOWNSTREAM CG7950 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	7053593	3R_7053593_SNP [dm3] 3R_11227871_SNP [dm6]	A	C	8.333e^-5	0.628	NON_SYNONYMOUS_CODING CG17726 DOWNSTREAM GCC88	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	9416711	2L_9416711_INS [dm3] 2L_9416711_INS [dm6]	T	TTGATT	8.370e^-5	0.628	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16778581	2R_16778581_SNP [dm3] 2R_20891076_SNP [dm6]	T	C	8.419e^-5	0.628	INTRON otp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	15121376	3L_15121376_SNP [dm3] 3L_15128276_SNP [dm6]	G	C	8.438e^-5	0.628	DOWNSTREAM Cep135 INTRON CG13457
2L	11487161	2L_11487161_SNP [dm3] 2L_11487161_SNP [dm6]	A	C	8.484e^-5	0.628	DOWNSTREAM sala & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16793857	2R_16793857_SNP [dm3] 2R_20906352_SNP [dm6]	G	A	8.526e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	27685216	3R_27685216_SNP [dm3] 3R_31859494_SNP [dm6]	G	A	8.530e^-5	0.628	INTRON heph
3R	26803998	3R_26803998_SNP [dm3] 3R_30978276_SNP [dm6]	C	A	8.534e^-5	0.628	INTRON 5-HT7
3L	10017877	3L_10017877_SNP [dm3] 3L_10024777_SNP [dm6]	G	C	8.583e^-5	0.628	INTRON dpr6
2L	9091377	2L_9091377_SNP [dm3] 2L_9091377_SNP [dm6]	G	T	8.586e^-5	0.628	INTERGENIC
X	16879941	X_16879941_SNP [dm3] X_16985908_SNP [dm6]	G	A	8.591e^-5	0.628	INTRON CG45002
3L	8880762	3L_8880762_SNP [dm3] 3L_8887662_SNP [dm6]	T	G	8.609e^-5	0.628	DOWNSTREAM CG43169 INTRON dally
3R	17640623	3R_17640623_SNP [dm3] 3R_21814901_SNP [dm6]	C	A	8.629e^-5	0.628	INTRON CASK
3R	5398720	3R_5398720_DEL [dm3] 3R_9572998_DEL [dm6]	GAAACTTTTTTTCATAGGG...	G	8.731e^-5	0.628	INTRON CG9399	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
2L	15109515	2L_15109515_SNP [dm3] 2L_15109515_SNP [dm6]	T	C	8.747e^-5	0.628	UTR_5_PRIME CG15269	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25399430	3R_25399430_SNP [dm3] 3R_29573708_SNP [dm6]	G	A	8.777e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20467147	2L_20467147_SNP [dm3] 2L_20467147_SNP [dm6]	C	T	8.816e^-5	0.628	INTRON CR44980
2R	16795600	2R_16795600_DEL [dm3] 2R_20908095_DEL [dm6]	AAA	A	8.818e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3L	11473590	3L_11473590_SNP [dm3] 3L_11480490_SNP [dm6]	G	A	8.881e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14373592	2L_14373592_SNP [dm3] 2L_14373592_SNP [dm6]	C	T	8.939e^-5	0.628	INTERGENIC
2L	1181263	2L_1181263_SNP [dm3] 2L_1181263_SNP [dm6]	T	C	8.961e^-5	0.628	SYNONYMOUS_CODING CG4896 UTR_3_PRIME CG4896
3R	19942038	3R_19942038_SNP [dm3] 3R_24116316_SNP [dm6]	G	T	8.976e^-5	0.628	UTR_5_PRIME CG13607 UPSTREAM CG13607 INTRON Rootletin
3R	14644799	3R_14644799_SNP [dm3] 3R_18819077_SNP [dm6]	T	A	9.011e^-5	0.628	INTRON CG18208
2L	19210975	2L_19210975_SNP [dm3] 2L_19210975_SNP [dm6]	T	C	9.020e^-5	0.628	INTERGENIC
2L	11787572	2L_11787572_SNP [dm3] 2L_11787572_SNP [dm6]	A	T	9.046e^-5	0.628	UPSTREAM CG14931 INTERGENIC
3L	14974035	3L_14974035_SNP [dm3] 3L_14980935_SNP [dm6]	A	C	9.070e^-5	0.628	NON_SYNONYMOUS_CODING CG3349
3R	20283205	3R_20283205_SNP [dm3] 3R_24457483_SNP [dm6]	G	A	9.122e^-5	0.628	UPSTREAM nAChRalpha1 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	14093120	3R_14093120_SNP [dm3] 3R_18267398_SNP [dm6]	T	A	9.132e^-5	0.628	UPSTREAM CG18599 INTERGENIC
2R	14760494	2R_14760494_SNP [dm3] 2R_18872989_SNP [dm6]	G	A	9.191e^-5	0.628	INTERGENIC
2R	1688225	2R_1688225_DEL [dm3] 2R_5800720_DEL [dm6]	AGACCAGGGTCGTAAA...	A	9.202e^-5	0.628	INTERGENIC
2L	14535645	2L_14535645_SNP [dm3] 2L_14535645_SNP [dm6]	G	A	9.206e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13438860	2L_13438860_SNP [dm3] 2L_13438860_SNP [dm6]	T	C	9.217e^-5	0.628	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	8876502	3L_8876502_SNP [dm3] 3L_8883402_SNP [dm6]	C	A	9.289e^-5	0.628	INTRON dally
3R	19325718	3R_19325718_SNP [dm3] 3R_23499996_SNP [dm6]	C	T	9.331e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA
3L	8311584	3L_8311584_SNP [dm3] 3L_8318484_SNP [dm6]	T	C	9.421e^-5	0.628	DOWNSTREAM CG43059 INTERGENIC
X	17317516	X_17317516_SNP [dm3] X_17423483_SNP [dm6]	G	T	9.449e^-5	0.628	UPSTREAM CG5613 INTRON CG12994	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4309021	3L_4309021_SNP [dm3] 3L_4309021_SNP [dm6]	G	C	9.461e^-5	0.628	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17666230	3R_17666230_SNP [dm3] 3R_21840508_SNP [dm6]	G	A	9.494e^-5	0.628	INTERGENIC
3L	7588655	3L_7588655_SNP [dm3] 3L_7595555_SNP [dm6]	T	C	9.515e^-5	0.628	INTRON CG33275
3L	1285276	3L_1285276_SNP [dm3] 3L_1285276_SNP [dm6]	A	T	9.543e^-5	0.628	INTRON CG32333
3R	26748647	3R_26748647_SNP [dm3] 3R_30922925_SNP [dm6]	G	A	9.596e^-5	0.628	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22188299	3R_22188299_SNP [dm3] 3R_26362577_SNP [dm6]	C	T	9.637e^-5	0.628	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
X	5255550	X_5255550_SNP [dm3] X_5361517_SNP [dm6]	T	C	9.637e^-5	0.628	INTRON SK
2R	10947373	2R_10947373_SNP [dm3] 2R_15059868_SNP [dm6]	C	G	9.677e^-5	0.628	INTERGENIC
3R	14093035	3R_14093035_SNP [dm3] 3R_18267313_SNP [dm6]	A	G	9.752e^-5	0.628	UPSTREAM CG18599 INTERGENIC
3L	13253428	3L_13253428_SNP [dm3] 3L_13260328_SNP [dm6]	G	T	9.770e^-5	0.628	INTRON caps
2R	10705422	2R_10705422_SNP [dm3] 2R_14817917_SNP [dm6]	A	C	9.793e^-5	0.628	UTR_3_PRIME CG10202	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4308014	3L_4308014_DEL [dm3] 3L_4308014_DEL [dm6]	CT	C	9.834e^-5	0.628	UPSTREAM dyl INTERGENIC
3R	21411983	3R_21411983_SNP [dm3] 3R_25586261_SNP [dm6]	G	T	9.856e^-5	0.628	INTRON msi
3L	5611774	3L_5611774_SNP [dm3] 3L_5618674_SNP [dm6]	T	C	9.914e^-5	0.628	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5398028	3L_5398028_SNP [dm3] 3L_5404928_SNP [dm6]	A	G	9.917e^-5	0.628	INTERGENIC
3L	4314350	3L_4314350_SNP [dm3] 3L_4314350_SNP [dm6]	G	A	9.956e^-5	0.628	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
X	6562464	X_6562464_INS [dm3] X_6668431_INS [dm6]	A	ATCTGAAAA	9.978e^-5	0.628	DOWNSTREAM CG3198 & 1 other INTERGENIC
2L	14358508	2L_14358508_SNP [dm3] 2L_14358508_SNP [dm6]	G	T	1.005e^-4	0.628	UTR_3_PRIME Rab14 UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other
3R	1172287	3R_1172287_SNP [dm3] 3R_5346565_SNP [dm6]	T	C	1.021e^-4	0.628	INTRON mtd
2R	9769860	2R_9769860_SNP [dm3] 2R_13882355_SNP [dm6]	C	T	1.028e^-4	0.628	INTRON shot	TF binding site mE1_TFBS_cad
2L	11112442	2L_11112442_SNP [dm3] 2L_11112442_SNP [dm6]	G	C	1.032e^-4	0.628	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11112444	2L_11112444_SNP [dm3] 2L_11112444_SNP [dm6]	C	T	1.032e^-4	0.628	INTRON CG6201	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18436648	2R_18436648_SNP [dm3] 2R_22549143_SNP [dm6]	G	A	1.049e^-4	0.628	UPSTREAM CG6018 INTRON px
2L	14358522	2L_14358522_SNP [dm3] 2L_14358522_SNP [dm6]	C	T	1.052e^-4	0.628	UTR_3_PRIME Rab14 UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other
2L	1691209	2L_1691209_DEL [dm3] 2L_1691209_DEL [dm6]	CTTTATAC	C	1.054e^-4	0.628	INTRON chinmo
2L	19210942	2L_19210942_SNP [dm3] 2L_19210942_SNP [dm6]	T	G	1.055e^-4	0.628	INTERGENIC
3L	1263619	3L_1263619_SNP [dm3] 3L_1263619_SNP [dm6]	G	C	1.056e^-4	0.628	INTRON CG9134
3R	25052930	3R_25052930_SNP [dm3] 3R_29227208_SNP [dm6]	C	T	1.064e^-4	0.628	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3R	6955121	3R_6955121_SNP [dm3] 3R_11129399_SNP [dm6]	A	G	1.065e^-4	0.628	INTERGENIC
2R	16350242	2R_16350242_SNP [dm3] 2R_20462737_SNP [dm6]	G	A	1.067e^-4	0.628	INTRON CG12484
3L	2115893	3L_2115893_SNP [dm3] 3L_2115893_SNP [dm6]	G	A	1.067e^-4	0.628	UPSTREAM sls INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13934212	3L_13934212_SNP [dm3] 3L_13941112_SNP [dm6]	C	T	1.071e^-4	0.628	SYNONYMOUS_CODING CG32137 INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	2303225	2L_2303225_SNP [dm3] 2L_2303225_SNP [dm6]	A	T	1.072e^-4	0.628	INTERGENIC
3L	5621994	3L_5621994_SNP [dm3] 3L_5628894_SNP [dm6]	A	G	1.079e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_inv
3L	10154264	3L_10154264_SNP [dm3] 3L_10161164_SNP [dm6]	T	C	1.079e^-4	0.628	INTRON dpr10
3R	26781114	3R_26781114_SNP [dm3] 3R_30955392_SNP [dm6]	T	G	1.081e^-4	0.628	INTERGENIC
3L	1818121	3L_1818121_DEL [dm3] 3L_1818121_DEL [dm6]	AC	A	1.082e^-4	0.628	INTRON GV1
3L	4867390	3L_4867390_SNP [dm3] 3L_4867390_SNP [dm6]	C	T	1.083e^-4	0.628	SPLICE_SITE_REGION CG17150 INTRON CG17150
3R	14575185	3R_14575185_SNP [dm3] 3R_18749463_SNP [dm6]	A	G	1.084e^-4	0.628	SYNONYMOUS_CODING gwl DOWNSTREAM CG14299
X	15980350	X_15980350_INS [dm3] X_16086317_INS [dm6]	A	AA	1.085e^-4	0.628	DOWNSTREAM CG8958 INTRON Tob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	18946162	3R_18946162_SNP [dm3] 3R_23120440_SNP [dm6]	G	T	1.101e^-4	0.628	UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20813391	2L_20813391_SNP [dm3] 2L_20813391_SNP [dm6]	G	A	1.102e^-4	0.628	DOWNSTREAM CG33322 INTRON CG9328
2L	20813404	2L_20813404_SNP [dm3] 2L_20813404_SNP [dm6]	T	A	1.102e^-4	0.628	DOWNSTREAM CG33322 INTRON CG9328
3R	13808828	3R_13808828_SNP [dm3] 3R_17983106_SNP [dm6]	T	A	1.107e^-4	0.628	INTRON cpo
3R	24377731	3R_24377731_SNP [dm3] 3R_28552009_SNP [dm6]	T	G	1.107e^-4	0.628	INTERGENIC
2R	13415810	2R_13415810_SNP [dm3] 2R_17528305_SNP [dm6]	G	A	1.108e^-4	0.628	SPLICE_SITE_REGION Patronin INTRON Patronin
3L	21358927	3L_21358927_DEL [dm3] 3L_21365827_DEL [dm6]	CT	C	1.109e^-4	0.628	INTERGENIC
2R	15099741	2R_15099741_SNP [dm3] 2R_19212236_SNP [dm6]	T	G	1.111e^-4	0.628	SYNONYMOUS_CODING hppy	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1691144	2L_1691144_SNP [dm3] 2L_1691144_SNP [dm6]	G	C	1.114e^-4	0.628	INTRON chinmo
3R	24795167	3R_24795167_SNP [dm3] 3R_28969445_SNP [dm6]	C	T	1.118e^-4	0.628	UTR_5_PRIME CG14521	TF binding site mE1_TFBS_chinmo
3L	4311272	3L_4311272_DEL [dm3] 3L_4311272_DEL [dm6]	CGTG	C	1.122e^-4	0.628	INTERGENIC
2R	15490152	2R_15490152_SNP [dm3] 2R_19602647_SNP [dm6]	A	T	1.123e^-4	0.628	UPSTREAM CR44473 INTRON sm
2L	11555195	2L_11555195_SNP [dm3] 2L_11555195_SNP [dm6]	A	G	1.125e^-4	0.628	INTERGENIC
3R	11207134	3R_11207134_SNP [dm3] 3R_15381412_SNP [dm6]	T	C	1.126e^-4	0.628	UTR_3_PRIME h-cup INTRON Rbp
2R	19034657	2R_19034657_SNP [dm3] 2R_23147134_SNP [dm6]	A	G	1.130e^-4	0.628	INTERGENIC
3L	4308563	3L_4308563_SNP [dm3] 3L_4308563_SNP [dm6]	A	G	1.131e^-4	0.628	UPSTREAM dyl INTERGENIC
X	16653230	X_16653230_SNP [dm3] X_16759197_SNP [dm6]	A	G	1.139e^-4	0.628	INTRON if
X	17316791	X_17316791_SNP [dm3] X_17422758_SNP [dm6]	A	C	1.143e^-4	0.628	UTR_3_PRIME CG12994 UPSTREAM CG8611 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	1744903	2L_1744903_SNP [dm3] 2L_1744903_SNP [dm6]	C	T	1.148e^-4	0.628	INTRON CG17646
3L	10152182	3L_10152182_SNP [dm3] 3L_10159082_SNP [dm6]	G	C	1.149e^-4	0.628	INTRON dpr10
2L	9235617	2L_9235617_SNP [dm3] 2L_9235617_SNP [dm6]	A	G	1.151e^-4	0.628	DOWNSTREAM tRNA:CR31885 INTRON tai
2L	4753770	2L_4753770_SNP [dm3] 2L_4753770_SNP [dm6]	C	T	1.152e^-4	0.628	INTRON CG15630
2R	16794125	2R_16794125_SNP [dm3] 2R_20906620_SNP [dm6]	A	T	1.156e^-4	0.628	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
3L	1268399	3L_1268399_SNP [dm3] 3L_1268399_SNP [dm6]	A	T	1.162e^-4	0.628	INTRON CG9134
2R	10514639	2R_10514639_SNP [dm3] 2R_14627134_SNP [dm6]	T	G	1.163e^-4	0.628	INTERGENIC
3R	4007063	3R_4007063_SNP [dm3] 3R_8181341_SNP [dm6]	A	G	1.164e^-4	0.628	UTR_5_PRIME grn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1268803	3L_1268803_SNP [dm3] 3L_1268803_SNP [dm6]	A	T	1.171e^-4	0.628	INTRON CG9134
3R	18587853	3R_18587853_SNP [dm3] 3R_22762131_SNP [dm6]	G	T	1.177e^-4	0.628	NON_SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
2L	16595881	2L_16595881_SNP [dm3] 2L_16595881_SNP [dm6]	C	G	1.179e^-4	0.628	INTRON CG42389
2R	15062443	2R_15062443_SNP [dm3] 2R_19174938_SNP [dm6]	T	C	1.180e^-4	0.628	SYNONYMOUS_CODING CG10737
X	16660835	X_16660835_SNP [dm3] X_16766802_SNP [dm6]	T	G	1.184e^-4	0.628	INTRON if
3L	13168071	3L_13168071_SNP [dm3] 3L_13174971_SNP [dm6]	G	A	1.185e^-4	0.628	NON_SYNONYMOUS_CODING snky	TF binding site mE1_TFBS_sens
3L	13253893	3L_13253893_SNP [dm3] 3L_13260793_SNP [dm6]	G	A	1.185e^-4	0.628	INTRON caps
2L	20829702	2L_20829702_SNP [dm3] 2L_20829702_SNP [dm6]	G	A	1.188e^-4	0.628	SYNONYMOUS_CODING CG31673	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
3R	14780171	3R_14780171_INS [dm3] 3R_18954449_INS [dm6]	C	CC	1.190e^-4	0.628	INTRON CG42613 & 1 other
2L	15474805	2L_15474805_SNP [dm3] 2L_15474805_SNP [dm6]	T	C	1.193e^-4	0.628	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3497415	3L_3497415_SNP [dm3] 3L_3497415_SNP [dm6]	C	T	1.193e^-4	0.628	INTRON CG42324
3R	18946013	3R_18946013_SNP [dm3] 3R_23120291_SNP [dm6]	C	T	1.196e^-4	0.628	SYNONYMOUS_CODING CenB1A UPSTREAM CenB1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10603285	2L_10603285_SNP [dm3] 2L_10603285_SNP [dm6]	G	C	1.196e^-4	0.628	INTRON Trim9
3L	8147780	3L_8147780_INS [dm3] 3L_8154680_INS [dm6]	T	TT	1.202e^-4	0.628	UTR_3_PRIME CG42445 DOWNSTREAM CG42445	TF binding site mE1_TFBS_HSA
3L	18279793	3L_18279793_SNP [dm3] 3L_18286693_SNP [dm6]	C	T	1.203e^-4	0.628	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	10109017	2R_10109017_SNP [dm3] 2R_14221512_SNP [dm6]	C	T	1.205e^-4	0.628	INTRON CG8468	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	21335839	3L_21335839_SNP [dm3] 3L_21342739_SNP [dm6]	G	T	1.205e^-4	0.628	INTRON CG7324
3L	4313657	3L_4313657_SNP [dm3] 3L_4313657_SNP [dm6]	C	G	1.210e^-4	0.628	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	9175899	2L_9175899_SNP [dm3] 2L_9175899_SNP [dm6]	G	T	1.210e^-4	0.628	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	14445424	X_14445424_SNP [dm3] X_14551391_SNP [dm6]	T	G	1.221e^-4	0.628	INTERGENIC
2R	20408913	2R_20408913_DEL [dm3] 2R_24521390_DEL [dm6]	GCA	TT	1.225e^-4	0.628	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	13204650	3L_13204650_SNP [dm3] 3L_13211550_SNP [dm6]	T	A	1.225e^-4	0.628	UPSTREAM tRNA:CR32128 & 1 other DOWNSTREAM tRNA:CR32129 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14189345	3L_14189345_SNP [dm3] 3L_14196245_SNP [dm6]	A	T	1.226e^-4	0.628	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	14020132	2L_14020132_SNP [dm3] 2L_14020132_SNP [dm6]	A	C	1.230e^-4	0.628	NON_SYNONYMOUS_CODING NimC3 DOWNSTREAM bgm EXON CR44849	TF binding site mE1_TFBS_cad
3R	27665964	3R_27665964_SNP [dm3] 3R_31840242_SNP [dm6]	A	T	1.234e^-4	0.628	SYNONYMOUS_CODING RhoGAP100F UTR_3_PRIME RhoGAP100F	TF binding site mE1_TFBS_sens
3R	22853619	3R_22853619_DEL [dm3] 3R_27027897_DEL [dm6]	AGGCCGCAAAA...	A	1.237e^-4	0.628	INTRON RYa-R	TF binding site mE1_TFBS_cad
2L	14121248	2L_14121248_SNP [dm3] 2L_14121248_SNP [dm6]	A	G	1.238e^-4	0.628	INTERGENIC
3L	13272750	3L_13272750_SNP [dm3] 3L_13279650_SNP [dm6]	C	T	1.244e^-4	0.628	UPSTREAM tRNA:CR32123:Psi DOWNSTREAM caps INTERGENIC
2L	10187280	2L_10187280_SNP [dm3] 2L_10187280_SNP [dm6]	A	G	1.246e^-4	0.628	INTRON Sur
3L	5554032	3L_5554032_SNP [dm3] 3L_5560932_SNP [dm6]	C	G	1.247e^-4	0.628	SYNONYMOUS_CODING sinu DOWNSTREAM Sucb	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26779862	3R_26779862_SNP [dm3] 3R_30954140_SNP [dm6]	C	G	1.250e^-4	0.628	INTERGENIC
3R	2808544	3R_2808544_SNP [dm3] 3R_6982822_SNP [dm6]	C	G	1.264e^-4	0.634	INTRON Antp
2R	10210238	2R_10210238_SNP [dm3] 2R_14322733_SNP [dm6]	A	C	1.272e^-4	0.636	INTRON Shroom	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	4763254	3R_4763254_SNP [dm3] 3R_8937532_SNP [dm6]	C	T	1.277e^-4	0.636	UTR_3_PRIME osk
2R	18888865	2R_18888865_SNP [dm3] 2R_23001342_SNP [dm6]	C	T	1.281e^-4	0.636	INTRON twi	TF binding site mE1_TFBS_bab1
3R	23184827	3R_23184827_SNP [dm3] 3R_27359105_SNP [dm6]	C	T	1.284e^-4	0.636	UPSTREAM CG42534 INTRON CG42534	TF binding site mE1_TFBS_chinmo
3L	7953244	3L_7953244_SNP [dm3] 3L_7960144_SNP [dm6]	G	C	1.286e^-4	0.636	INTERGENIC
2L	7518407	2L_7518407_SNP [dm3] 2L_7518407_SNP [dm6]	T	A	1.289e^-4	0.636	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad
2L	1008996	2L_1008996_SNP [dm3] 2L_1008996_SNP [dm6]	G	A	1.291e^-4	0.636	UTR_3_PRIME IA-2
2L	20813388	2L_20813388_SNP [dm3] 2L_20813388_SNP [dm6]	A	C	1.296e^-4	0.636	DOWNSTREAM CG33322 INTRON CG9328
3L	2994268	3L_2994268_SNP [dm3] 3L_2994268_SNP [dm6]	A	C	1.307e^-4	0.64	UPSTREAM CG2113 INTERGENIC
2R	15117861	2R_15117861_SNP [dm3] 2R_19230356_SNP [dm6]	A	T	1.320e^-4	0.641	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	10150721	3L_10150721_INS [dm3] 3L_10157621_INS [dm6]	A	AGA	1.330e^-4	0.641	INTRON dpr10
2R	19345796	2R_19345796_SNP [dm3] 2R_23458273_SNP [dm6]	A	G	1.338e^-4	0.641	SYNONYMOUS_CODING skpF INTRON CG43795	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	969723	3L_969723_SNP [dm3] 3L_969723_SNP [dm6]	G	A	1.345e^-4	0.641	INTRON Glut1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	10189837	2L_10189837_SNP [dm3] 2L_10189837_SNP [dm6]	C	T	1.360e^-4	0.641	UTR_3_PRIME CG31874 INTRON Sur	TF binding site mE1_TFBS_cad
2L	19819477	2L_19819477_SNP [dm3] 2L_19819477_SNP [dm6]	G	A	1.364e^-4	0.641	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn
2L	20823093	2L_20823093_SNP [dm3] 2L_20823093_SNP [dm6]	T	A	1.367e^-4	0.641	UTR_5_PRIME CG9331 UPSTREAM CG9331	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	9892228	3R_9892228_SNP [dm3] 3R_14066506_SNP [dm6]	A	T	1.371e^-4	0.641	INTRON foxo
2L	14358896	2L_14358896_SNP [dm3] 2L_14358896_SNP [dm6]	A	G	1.371e^-4	0.641	UPSTREAM Pgant35A DOWNSTREAM CR43463 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	13254048	3L_13254048_SNP [dm3] 3L_13260948_SNP [dm6]	T	A	1.375e^-4	0.641	INTRON caps
X	15980345	X_15980345_SNP [dm3] X_16086312_SNP [dm6]	C	G	1.376e^-4	0.641	DOWNSTREAM CG8958 INTRON Tob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	15980402	X_15980402_SNP [dm3] X_16086369_SNP [dm6]	G	C	1.376e^-4	0.641	DOWNSTREAM CG8958 INTRON Tob	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6310552	3R_6310552_SNP [dm3] 3R_10484830_SNP [dm6]	T	A	1.378e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_cad
2R	2092675	2R_2092675_DEL [dm3] 2R_6205170_DEL [dm6]	TT	T	1.380e^-4	0.641	UTR_3_PRIME CG30431
3L	10138631	3L_10138631_SNP [dm3] 3L_10145531_SNP [dm6]	A	G	1.386e^-4	0.641	INTERGENIC
2R	17104139	2R_17104139_SNP [dm3] 2R_21216634_SNP [dm6]	G	C	1.386e^-4	0.641	NON_SYNONYMOUS_CODING CG15661	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9496771	2L_9496771_INS [dm3] 2L_9496771_INS [dm6]	T	TT	1.388e^-4	0.641	INTRON CG33298	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22522050	3R_22522050_SNP [dm3] 3R_26696328_SNP [dm6]	T	C	1.389e^-4	0.641	INTERGENIC
3R	26779877	3R_26779877_SNP [dm3] 3R_30954155_SNP [dm6]	T	C	1.394e^-4	0.641	INTERGENIC
3R	26016256	3R_26016256_SNP [dm3] 3R_30190534_SNP [dm6]	C	T	1.399e^-4	0.641	NON_SYNONYMOUS_CODING CG9747	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24027236	3R_24027236_SNP [dm3] 3R_28201514_SNP [dm6]	T	A	1.402e^-4	0.641	INTRON CG34354
3L	3882242	3L_3882242_SNP [dm3] 3L_3882242_SNP [dm6]	C	G	1.406e^-4	0.641	INTERGENIC
3L	3882243	3L_3882243_SNP [dm3] 3L_3882243_SNP [dm6]	A	C	1.406e^-4	0.641	INTERGENIC
2L	13274864	2L_13274864_SNP [dm3] 2L_13274864_SNP [dm6]	T	A	1.416e^-4	0.641	INTRON CG44085
2L	2092272	2L_2092272_SNP [dm3] 2L_2092272_SNP [dm6]	T	C	1.418e^-4	0.641	INTRON dpr3
2L	9422130	2L_9422130_SNP [dm3] 2L_9422130_SNP [dm6]	G	C	1.420e^-4	0.641	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14093017	3R_14093017_SNP [dm3] 3R_18267295_SNP [dm6]	A	T	1.420e^-4	0.641	UPSTREAM CG18599 INTERGENIC
3R	11479080	3R_11479080_SNP [dm3] 3R_15653358_SNP [dm6]	T	C	1.423e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
X	16654706	X_16654706_SNP [dm3] X_16760673_SNP [dm6]	A	G	1.427e^-4	0.641	INTRON if	TF binding site BDTNP1_TFBS_da
2R	15429217	2R_15429217_SNP [dm3] 2R_19541712_SNP [dm6]	C	T	1.438e^-4	0.641	INTRON sm
3R	12140407	3R_12140407_SNP [dm3] 3R_16314685_SNP [dm6]	G	T	1.442e^-4	0.641	SYNONYMOUS_CODING Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2R	17938981	2R_17938981_SNP [dm3] 2R_22051476_SNP [dm6]	G	A	1.447e^-4	0.641	INTERGENIC
3L	3649448	3L_3649448_SNP [dm3] 3L_3649448_SNP [dm6]	C	T	1.455e^-4	0.641	INTRON dar1
3R	10643632	3R_10643632_SNP [dm3] 3R_14817910_SNP [dm6]	A	T	1.455e^-4	0.641	SYNONYMOUS_CODING btsz UTR_5_PRIME btsz INTRON btsz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	1904606	3L_1904606_SNP [dm3] 3L_1904606_SNP [dm6]	A	T	1.459e^-4	0.641	INTRON CG1887	TF binding site mE1_TFBS_chinmo
2L	3154511	2L_3154511_SNP [dm3] 2L_3154511_SNP [dm6]	C	T	1.460e^-4	0.641	INTRON Mad
3R	27687517	3R_27687517_SNP [dm3] 3R_31861795_SNP [dm6]	C	T	1.464e^-4	0.641	INTRON heph
3L	8888663	3L_8888663_SNP [dm3] 3L_8895563_SNP [dm6]	C	A	1.464e^-4	0.641	INTRON TrpA1
3R	25139132	3R_25139132_SNP [dm3] 3R_29313410_SNP [dm6]	C	A	1.466e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	6211294	X_6211294_SNP [dm3] X_6317261_SNP [dm6]	A	C	1.470e^-4	0.641	UPSTREAM CG15894 INTRON CG15894	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14550905	3R_14550905_SNP [dm3] 3R_18725183_SNP [dm6]	T	C	1.472e^-4	0.641	SYNONYMOUS_CODING Cha DOWNSTREAM CG7714	TF binding site mE1_TFBS_chinmo
3L	9800362	3L_9800362_SNP [dm3] 3L_9807262_SNP [dm6]	G	A	1.474e^-4	0.641	INTRON CG32052	TF binding site mE1_TFBS_inv
2R	14495286	2R_14495286_SNP [dm3] 2R_18607781_SNP [dm6]	T	G	1.479e^-4	0.641	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	9975158	X_9975158_SNP [dm3] X_10081125_SNP [dm6]	G	A	1.482e^-4	0.641	SYNONYMOUS_CODING ZAP3
3R	25139342	3R_25139342_SNP [dm3] 3R_29313620_SNP [dm6]	T	C	1.483e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8682550	3L_8682550_SNP [dm3] 3L_8689450_SNP [dm6]	G	A	1.485e^-4	0.641	INTERGENIC
2R	18777847	2R_18777847_SNP [dm3] 2R_22890324_SNP [dm6]	T	G	1.485e^-4	0.641	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
X	3379767	X_3379767_SNP [dm3] X_3485734_SNP [dm6]	T	C	1.486e^-4	0.641	START_GAINED CG10803 UTR_5_PRIME CG10803 UPSTREAM CG14270 INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	9738814	2R_9738814_SNP [dm3] 2R_13851309_SNP [dm6]	T	G	1.495e^-4	0.641	SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	9412787	2L_9412787_SNP [dm3] 2L_9412787_SNP [dm6]	T	G	1.499e^-4	0.641	INTRON Shawl
2L	20813381	2L_20813381_SNP [dm3] 2L_20813381_SNP [dm6]	A	T	1.499e^-4	0.641	DOWNSTREAM CG33322 INTRON CG9328
3R	16494797	3R_16494797_SNP [dm3] 3R_20669075_SNP [dm6]	C	T	1.500e^-4	0.641	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
2R	14360760	2R_14360760_INS [dm3] 2R_18473255_INS [dm6]	CGA	ATGCT	1.516e^-4	0.641	INTRON CG30116
3R	5994681	3R_5994681_SNP [dm3] 3R_10168959_SNP [dm6]	A	G	1.518e^-4	0.641	INTRON Best1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
2R	17138417	2R_17138417_SNP [dm3] 2R_21250912_SNP [dm6]	T	A	1.521e^-4	0.641	UTR_5_PRIME ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2R	9769854	2R_9769854_SNP [dm3] 2R_13882349_SNP [dm6]	A	G	1.527e^-4	0.641	INTRON shot	TF binding site mE1_TFBS_cad
X	4802912	X_4802912_SNP [dm3] X_4908879_SNP [dm6]	C	G	1.528e^-4	0.641	UPSTREAM CG32772 DOWNSTREAM CG6927 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	13839987	2L_13839987_SNP [dm3] 2L_13839987_SNP [dm6]	T	G	1.532e^-4	0.641	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5515625	2L_5515625_SNP [dm3] 2L_5515625_SNP [dm6]	C	T	1.532e^-4	0.641	INTERGENIC
2R	16091082	2R_16091082_SNP [dm3] 2R_20203577_SNP [dm6]	T	G	1.539e^-4	0.641	INTERGENIC
3L	4319626	3L_4319626_SNP [dm3] 3L_4319626_SNP [dm6]	G	T	1.542e^-4	0.641	INTRON CG32250	TF binding site mE1_TFBS_HSA
2L	2093053	2L_2093053_DEL [dm3] 2L_2093053_DEL [dm6]	GG	G	1.545e^-4	0.641	INTRON dpr3
2R	17335824	2R_17335824_SNP [dm3] 2R_21448319_SNP [dm6]	C	A	1.546e^-4	0.641	INTRON Sdc
3L	14159569	3L_14159569_SNP [dm3] 3L_14166469_SNP [dm6]	A	C	1.547e^-4	0.641	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10138635	3L_10138635_SNP [dm3] 3L_10145535_SNP [dm6]	C	A	1.550e^-4	0.641	INTERGENIC
3R	14176858	3R_14176858_SNP [dm3] 3R_18351136_SNP [dm6]	G	T	1.554e^-4	0.641	INTRON CG15803
3R	18176610	3R_18176610_SNP [dm3] 3R_22350888_SNP [dm6]	G	A	1.565e^-4	0.641	UPSTREAM rdhB INTERGENIC
3R	19397495	3R_19397495_SNP [dm3] 3R_23571773_SNP [dm6]	T	A	1.567e^-4	0.641	INTRON beat-IV
2R	14493885	2R_14493885_SNP [dm3] 2R_18606380_SNP [dm6]	G	T	1.571e^-4	0.641	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_sbb
2R	3791585	2R_3791585_SNP [dm3] 2R_7904080_SNP [dm6]	G	C	1.573e^-4	0.641	INTRON CG30377
3R	19325668	3R_19325668_SNP [dm3] 3R_23499946_SNP [dm6]	G	A	1.577e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1674845	3L_1674845_SNP [dm3] 3L_1674845_SNP [dm6]	C	T	1.585e^-4	0.641	START_GAINED CG7991 UTR_5_PRIME CG7991
3L	9602120	3L_9602120_SNP [dm3] 3L_9609020_SNP [dm6]	G	T	1.586e^-4	0.641	NON_SYNONYMOUS_CODING CG3280
3R	18979494	3R_18979494_SNP [dm3] 3R_23153772_SNP [dm6]	C	T	1.587e^-4	0.641	UTR_3_PRIME unk
3R	22516759	3R_22516759_SNP [dm3] 3R_26691037_SNP [dm6]	G	T	1.588e^-4	0.641	INTERGENIC
2L	14119336	2L_14119336_SNP [dm3] 2L_14119336_SNP [dm6]	A	T	1.591e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	22732915	3R_22732915_SNP [dm3] 3R_26907193_SNP [dm6]	A	G	1.599e^-4	0.641	INTRON T48	regulatory region REDfly_CRMs
2R	12191272	2R_12191272_SNP [dm3] 2R_16303767_SNP [dm6]	C	T	1.600e^-4	0.641	EXON CR45232
3R	14623369	3R_14623369_SNP [dm3] 3R_18797647_SNP [dm6]	T	C	1.601e^-4	0.641	INTERGENIC
3L	8690271	3L_8690271_SNP [dm3] 3L_8697171_SNP [dm6]	T	A	1.608e^-4	0.641	INTERGENIC
2R	14493820	2R_14493820_DEL [dm3] 2R_18606315_DEL [dm6]	CTTTTAAAAAGAAC...	C	1.611e^-4	0.641	INTRON GEFmeso	TF binding site mE1_TFBS_sbb
3R	21189518	3R_21189518_SNP [dm3] 3R_25363796_SNP [dm6]	C	A	1.617e^-4	0.641	INTRON Fur1
2R	15079772	2R_15079772_SNP [dm3] 2R_19192267_SNP [dm6]	A	C	1.619e^-4	0.641	INTRON hppy
3R	27171901	3R_27171901_SNP [dm3] 3R_31346179_SNP [dm6]	A	G	1.621e^-4	0.641	INTRON CG34347
3R	13894707	3R_13894707_SNP [dm3] 3R_18068985_SNP [dm6]	T	A	1.621e^-4	0.641	INTERGENIC
3L	3882206	3L_3882206_SNP [dm3] 3L_3882206_SNP [dm6]	T	G	1.630e^-4	0.641	INTERGENIC
2L	20794819	2L_20794819_SNP [dm3] 2L_20794819_SNP [dm6]	T	C	1.633e^-4	0.641	UPSTREAM vari INTRON vari EXON CR44146
3R	1528797	3R_1528797_SNP [dm3] 3R_5703075_SNP [dm6]	T	C	1.634e^-4	0.641	INTRON plx	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	801307	2L_801307_SNP [dm3] 2L_801307_SNP [dm6]	C	A	1.635e^-4	0.641	DOWNSTREAM CR45259 INTERGENIC
3R	5403962	3R_5403962_SNP [dm3] 3R_9578240_SNP [dm6]	A	C	1.639e^-4	0.641	NON_SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4309123	3L_4309123_SNP [dm3] 3L_4309123_SNP [dm6]	T	A	1.641e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4825443	2L_4825443_SNP [dm3] 2L_4825443_SNP [dm6]	C	G	1.641e^-4	0.641	INTRON CG15628
3R	6310553	3R_6310553_DEL [dm3] 3R_10484831_DEL [dm6]	CACCCCATCATCC...	C	1.646e^-4	0.641	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14360982	2R_14360982_SNP [dm3] 2R_18473477_SNP [dm6]	C	A	1.651e^-4	0.641	INTRON CG30116
2R	4012468	2R_4012468_SNP [dm3] 2R_8124963_SNP [dm6]	A	C	1.654e^-4	0.641	UTR_3_PRIME Nup50 DOWNSTREAM coil
2L	9409888	2L_9409888_SNP [dm3] 2L_9409888_SNP [dm6]	T	C	1.660e^-4	0.641	INTRON Shawl
3L	13253735	3L_13253735_SNP [dm3] 3L_13260635_SNP [dm6]	C	A	1.663e^-4	0.641	INTRON caps
3L	2155678	3L_2155678_SNP [dm3] 3L_2155678_SNP [dm6]	G	T	1.671e^-4	0.641	INTRON CG15822
2L	1743813	2L_1743813_SNP [dm3] 2L_1743813_SNP [dm6]	A	G	1.672e^-4	0.641	INTRON CG17646
3R	17064659	3R_17064659_SNP [dm3] 3R_21238937_SNP [dm6]	C	T	1.676e^-4	0.641	INTERGENIC	regulatory region REDfly_CRMs
X	4773496	X_4773496_SNP [dm3] X_4879463_SNP [dm6]	T	C	1.680e^-4	0.641	INTRON CG42594
3R	21421383	3R_21421383_SNP [dm3] 3R_25595661_SNP [dm6]	A	G	1.681e^-4	0.641	INTRON ymp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24162893	3R_24162893_SNP [dm3] 3R_28337171_SNP [dm6]	G	T	1.683e^-4	0.641	UTR_3_PRIME Gfat2 UPSTREAM larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	11543084	3R_11543084_SNP [dm3] 3R_15717362_SNP [dm6]	C	T	1.684e^-4	0.641	UPSTREAM CG31294 INTERGENIC
2L	13840030	2L_13840030_SNP [dm3] 2L_13840030_SNP [dm6]	A	G	1.684e^-4	0.641	UTR_3_PRIME CG33307 DOWNSTREAM CG33307 INTRON CenG1A	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14189206	3L_14189206_SNP [dm3] 3L_14196106_SNP [dm6]	G	C	1.687e^-4	0.641	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12577928	2R_12577928_SNP [dm3] 2R_16690423_SNP [dm6]	A	T	1.689e^-4	0.641	UPSTREAM CG5210 INTRON CG30463
2L	5421039	2L_5421039_SNP [dm3] 2L_5421039_SNP [dm6]	T	G	1.693e^-4	0.641	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	14375444	2L_14375444_SNP [dm3] 2L_14375444_SNP [dm6]	A	G	1.694e^-4	0.641	INTERGENIC
2R	10705413	2R_10705413_SNP [dm3] 2R_14817908_SNP [dm6]	C	A	1.696e^-4	0.641	UTR_3_PRIME CG10202	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1257089	3L_1257089_SNP [dm3] 3L_1257089_SNP [dm6]	G	C	1.696e^-4	0.641	UTR_5_PRIME CG9134
3R	17065083	3R_17065083_SNP [dm3] 3R_21239361_SNP [dm6]	A	T	1.712e^-4	0.641	INTERGENIC	regulatory region REDfly_CRMs
3L	1270669	3L_1270669_SNP [dm3] 3L_1270669_SNP [dm6]	C	T	1.714e^-4	0.641	INTRON CG9134
2R	14493928	2R_14493928_INS [dm3] 2R_18606423_INS [dm6]	A	ACATACAAA	1.715e^-4	0.641	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
2R	17358389	2R_17358389_SNP [dm3] 2R_21470884_SNP [dm6]	C	T	1.716e^-4	0.641	INTRON Sdc
3R	13776759	3R_13776759_SNP [dm3] 3R_17951037_SNP [dm6]	C	G	1.718e^-4	0.641	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1533124	3R_1533124_SNP [dm3] 3R_5707402_SNP [dm6]	G	A	1.719e^-4	0.641	SYNONYMOUS_CODING plx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15069323	2R_15069323_SNP [dm3] 2R_19181818_SNP [dm6]	C	A	1.722e^-4	0.641	INTRON hppy
3R	19543391	3R_19543391_SNP [dm3] 3R_23717669_SNP [dm6]	C	G	1.724e^-4	0.641	SYNONYMOUS_CODING nau	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22448053	3R_22448053_SNP [dm3] 3R_26622331_SNP [dm6]	C	T	1.727e^-4	0.641	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
3L	17969792	3L_17969792_INS [dm3] 3L_17976692_INS [dm6]	A	AGCGAGAA	1.731e^-4	0.641	INTRON Eip75B	TF binding site mE1_TFBS_HSA
3R	26781263	3R_26781263_SNP [dm3] 3R_30955541_SNP [dm6]	A	G	1.733e^-4	0.641	INTERGENIC
3L	17193388	3L_17193388_SNP [dm3] 3L_17200288_SNP [dm6]	T	A	1.740e^-4	0.641	INTRON Rbp6
X	5936496	X_5936496_SNP [dm3] X_6042463_SNP [dm6]	C	G	1.742e^-4	0.641	SYNONYMOUS_CODING CG5937	TF binding site mE1_TFBS_chinmo
2R	14208475	2R_14208475_SNP [dm3] 2R_18320970_SNP [dm6]	A	G	1.745e^-4	0.641	INTRON sbb
2L	4753782	2L_4753782_SNP [dm3] 2L_4753782_SNP [dm6]	A	T	1.746e^-4	0.641	INTRON CG15630
2L	14119196	2L_14119196_SNP [dm3] 2L_14119196_SNP [dm6]	T	C	1.754e^-4	0.641	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	17138332	2R_17138332_SNP [dm3] 2R_21250827_SNP [dm6]	G	A	1.764e^-4	0.641	START_GAINED ASPP UTR_5_PRIME ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
2L	19210965	2L_19210965_SNP [dm3] 2L_19210965_SNP [dm6]	C	A	1.766e^-4	0.641	INTERGENIC
2R	14558617	2R_14558617_SNP [dm3] 2R_18671112_SNP [dm6]	T	G	1.769e^-4	0.641	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6890627	3L_6890627_SNP [dm3] 3L_6897527_SNP [dm6]	A	G	1.774e^-4	0.641	INTERGENIC
3R	22188401	3R_22188401_SNP [dm3] 3R_26362679_SNP [dm6]	T	C	1.775e^-4	0.641	DOWNSTREAM CG33970 INTERGENIC
3R	22188405	3R_22188405_SNP [dm3] 3R_26362683_SNP [dm6]	G	C	1.775e^-4	0.641	DOWNSTREAM CG33970 INTERGENIC
X	3256350	X_3256350_SNP [dm3] X_3362317_SNP [dm6]	T	A	1.783e^-4	0.641	INTERGENIC
3L	8888660	3L_8888660_DEL [dm3] 3L_8895560_DEL [dm6]	TA	C	1.784e^-4	0.641	INTRON TrpA1
2L	7540568	2L_7540568_DEL [dm3] 2L_7540568_DEL [dm6]	GT	G	1.788e^-4	0.641	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20491245	3R_20491245_SNP [dm3] 3R_24665523_SNP [dm6]	C	T	1.794e^-4	0.641	INTRON slo	regulatory region REDfly_CRMs
3R	18449065	3R_18449065_SNP [dm3] 3R_22623343_SNP [dm6]	C	T	1.798e^-4	0.641	INTRON loco
3R	3972103	3R_3972103_SNP [dm3] 3R_8146381_SNP [dm6]	G	T	1.799e^-4	0.641	DOWNSTREAM grn INTERGENIC
3L	18135454	3L_18135454_SNP [dm3] 3L_18142354_SNP [dm6]	C	T	1.800e^-4	0.641	INTRON gk
3R	26782268	3R_26782268_SNP [dm3] 3R_30956546_SNP [dm6]	A	T	1.800e^-4	0.641	INTERGENIC
3L	15121405	3L_15121405_SNP [dm3] 3L_15128305_SNP [dm6]	A	T	1.801e^-4	0.641	DOWNSTREAM Cep135 INTRON CG13457
3L	4314458	3L_4314458_SNP [dm3] 3L_4314458_SNP [dm6]	T	C	1.803e^-4	0.641	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
X	22272608	X_22272608_SNP [dm3] X_22870772_SNP [dm6]	G	T	1.803e^-4	0.641	DOWNSTREAM CR43656 INTRON CG42346 EXON CR43656
3R	14093223	3R_14093223_INS [dm3] 3R_18267501_INS [dm6]	A	AAA	1.806e^-4	0.641	UPSTREAM CG18599 INTERGENIC
3R	14547466	3R_14547466_SNP [dm3] 3R_18721744_SNP [dm6]	C	A	1.810e^-4	0.641	DOWNSTREAM CG34283 INTRON Cha
2L	13544426	2L_13544426_SNP [dm3] 2L_13544426_SNP [dm6]	T	A	1.812e^-4	0.641	DOWNSTREAM CG16853 INTRON B4
2L	13438838	2L_13438838_SNP [dm3] 2L_13438838_SNP [dm6]	T	C	1.814e^-4	0.641	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4867160	3L_4867160_SNP [dm3] 3L_4867160_SNP [dm6]	G	C	1.819e^-4	0.641	INTRON CG17150
3L	1263567	3L_1263567_DEL [dm3] 3L_1263567_DEL [dm6]	AA	A	1.831e^-4	0.642	INTRON CG9134
3R	6217558	3R_6217558_SNP [dm3] 3R_10391836_SNP [dm6]	A	C	1.832e^-4	0.642	INTRON cwo
2L	4753705	2L_4753705_MNP [dm3] 2L_4753705_MNP [dm6]	TAT	CTA	1.833e^-4	0.642	INTRON CG15630
3L	5419079	3L_5419079_SNP [dm3] 3L_5425979_SNP [dm6]	A	C	1.853e^-4	0.643	INTRON CG34391
3L	8357266	3L_8357266_SNP [dm3] 3L_8364166_SNP [dm6]	C	T	1.861e^-4	0.643	INTERGENIC
3L	4725131	3L_4725131_SNP [dm3] 3L_4725131_SNP [dm6]	A	T	1.861e^-4	0.643	INTRON RhoGEF64C
3L	8888688	3L_8888688_SNP [dm3] 3L_8895588_SNP [dm6]	C	A	1.865e^-4	0.643	SPLICE_SITE_REGION TrpA1 INTRON TrpA1
3R	18985204	3R_18985204_SNP [dm3] 3R_23159482_SNP [dm6]	T	A	1.871e^-4	0.643	UPSTREAM VhaAC39-2 DOWNSTREAM CG13829 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5300056	2L_5300056_DEL [dm3] 2L_5300056_DEL [dm6]	TAT	T	1.878e^-4	0.643	INTRON vri
2L	4824435	2L_4824435_SNP [dm3] 2L_4824435_SNP [dm6]	A	G	1.887e^-4	0.643	INTRON CG15628	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17066416	3R_17066416_SNP [dm3] 3R_21240694_SNP [dm6]	T	A	1.888e^-4	0.643	INTERGENIC	regulatory region REDfly_CRMs
2L	11120305	2L_11120305_SNP [dm3] 2L_11120305_SNP [dm6]	C	G	1.889e^-4	0.643	START_GAINED CG6230 UTR_5_PRIME CG6230 DOWNSTREAM CG14921	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2322577	3L_2322577_SNP [dm3] 3L_2322577_SNP [dm6]	T	C	1.895e^-4	0.643	UPSTREAM MsR1 INTERGENIC
2L	3154486	2L_3154486_SNP [dm3] 2L_3154486_SNP [dm6]	G	A	1.895e^-4	0.643	INTRON Mad
3L	14962949	3L_14962949_SNP [dm3] 3L_14969849_SNP [dm6]	C	T	1.897e^-4	0.643	SYNONYMOUS_CODING Tom	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4642212	3L_4642212_SNP [dm3] 3L_4642212_SNP [dm6]	C	T	1.916e^-4	0.643	DOWNSTREAM axo INTRON axo
2R	12600477	2R_12600477_SNP [dm3] 2R_16712972_SNP [dm6]	G	A	1.919e^-4	0.643	INTRON CG30463
3L	5398023	3L_5398023_SNP [dm3] 3L_5404923_SNP [dm6]	C	T	1.923e^-4	0.643	INTERGENIC
2L	19817204	2L_19817204_SNP [dm3] 2L_19817204_SNP [dm6]	T	C	1.933e^-4	0.643	DOWNSTREAM snRNA:U5:38ABb INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_ttk mE1_TFBS_zfh1
3R	1209040	3R_1209040_SNP [dm3] 3R_5383318_SNP [dm6]	A	G	1.936e^-4	0.643	SYNONYMOUS_CODING kkv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19741666	3R_19741666_SNP [dm3] 3R_23915944_SNP [dm6]	C	G	1.938e^-4	0.643	INTRON sba
2R	16798263	2R_16798263_DEL [dm3] 2R_20910758_DEL [dm6]	AGATTGGCTATAG...	A	1.942e^-4	0.643	UTR_3_PRIME CG9235	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10399602	3L_10399602_SNP [dm3] 3L_10406502_SNP [dm6]	C	T	1.949e^-4	0.643	INTERGENIC
3R	24377725	3R_24377725_SNP [dm3] 3R_28552003_SNP [dm6]	A	G	1.949e^-4	0.643	INTERGENIC
2L	805091	2L_805091_SNP [dm3] 2L_805091_SNP [dm6]	G	A	1.957e^-4	0.643	INTERGENIC
2L	5422712	2L_5422712_SNP [dm3] 2L_5422712_SNP [dm6]	C	T	1.959e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23307170	3R_23307170_SNP [dm3] 3R_27481448_SNP [dm6]	G	A	1.973e^-4	0.643	UTR_3_PRIME Cyp6a18 DOWNSTREAM Cyp6a18
2L	2170607	2L_2170607_SNP [dm3] 2L_2170607_SNP [dm6]	G	A	1.974e^-4	0.643	INTRON aop	regulatory region REDfly_CRMs
3L	19027050	3L_19027050_SNP [dm3] 3L_19033950_SNP [dm6]	A	T	1.976e^-4	0.643	INTRON nkd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E
3R	10458164	3R_10458164_SNP [dm3] 3R_14632442_SNP [dm6]	C	T	1.977e^-4	0.643	INTRON CG7886 & 1 other
2L	16542507	2L_16542507_SNP [dm3] 2L_16542507_SNP [dm6]	A	C	1.980e^-4	0.643	UPSTREAM CG31816 INTERGENIC
2R	10206963	2R_10206963_SNP [dm3] 2R_14319458_SNP [dm6]	G	A	1.986e^-4	0.643	INTRON Shroom
3L	433801	3L_433801_SNP [dm3] 3L_433801_SNP [dm6]	T	C	1.987e^-4	0.643	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3254475	X_3254475_SNP [dm3] X_3360442_SNP [dm6]	A	T	1.990e^-4	0.643	INTERGENIC
3R	1200414	3R_1200414_SNP [dm3] 3R_5374692_SNP [dm6]	C	A	1.999e^-4	0.643	UPSTREAM CG14667 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_ttk mE1_TFBS_Ubx
3L	1264394	3L_1264394_SNP [dm3] 3L_1264394_SNP [dm6]	T	A	2.002e^-4	0.643	INTRON CG9134
3L	5621901	3L_5621901_SNP [dm3] 3L_5628801_SNP [dm6]	C	A	2.007e^-4	0.643	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7202684	2L_7202684_SNP [dm3] 2L_7202684_SNP [dm6]	A	C	2.007e^-4	0.643	INTRON CG4502
2L	7526536	2L_7526536_SNP [dm3] 2L_7526536_SNP [dm6]	T	A	2.009e^-4	0.643	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18062863	2R_18062863_SNP [dm3] 2R_22175358_SNP [dm6]	A	T	2.018e^-4	0.643	UPSTREAM CG3045 INTRON CG6758 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	2288416	2L_2288416_SNP [dm3] 2L_2288416_SNP [dm6]	C	T	2.020e^-4	0.643	UPSTREAM CG42658 DOWNSTREAM CG17237 INTERGENIC
3L	4308003	3L_4308003_DEL [dm3] 3L_4308003_DEL [dm6]	ATA	CC	2.026e^-4	0.643	UPSTREAM dyl INTERGENIC
3L	14189444	3L_14189444_SNP [dm3] 3L_14196344_SNP [dm6]	A	G	2.028e^-4	0.643	INTRON nuf	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19196988	3L_19196988_SNP [dm3] 3L_19203888_SNP [dm6]	C	T	2.030e^-4	0.643	INTRON fz2
3L	8287980	3L_8287980_SNP [dm3] 3L_8294880_SNP [dm6]	G	A	2.031e^-4	0.643	INTRON CG7201
3R	25330433	3R_25330433_SNP [dm3] 3R_29504711_SNP [dm6]	T	G	2.037e^-4	0.643	UPSTREAM Trc8 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	5994728	3R_5994728_SNP [dm3] 3R_10169006_SNP [dm6]	T	A	2.039e^-4	0.643	INTRON Best1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_zfh1
3L	17487553	3L_17487553_SNP [dm3] 3L_17494453_SNP [dm6]	C	T	2.040e^-4	0.643	UPSTREAM edin INTRON Oatp74D
3L	1121903	3L_1121903_SNP [dm3] 3L_1121903_SNP [dm6]	C	T	2.045e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	24043789	3R_24043789_SNP [dm3] 3R_28218067_SNP [dm6]	C	A	2.045e^-4	0.643	INTRON CG34354
2R	17642253	2R_17642253_SNP [dm3] 2R_21754748_SNP [dm6]	A	G	2.047e^-4	0.643	INTERGENIC
2R	9689690	2R_9689690_SNP [dm3] 2R_13802185_SNP [dm6]	C	T	2.054e^-4	0.643	INTRON Cpr50Cb
2L	1966259	2L_1966259_SNP [dm3] 2L_1966259_SNP [dm6]	C	T	2.056e^-4	0.643	DOWNSTREAM tRNA:CR31942 INTRON erm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	21094572	3L_21094572_SNP [dm3] 3L_21101472_SNP [dm6]	C	T	2.057e^-4	0.643	INTRON ko	regulatory region REDfly_CRMs
2L	1655783	2L_1655783_SNP [dm3] 2L_1655783_SNP [dm6]	A	T	2.058e^-4	0.643	INTRON chinmo
3R	27688601	3R_27688601_DEL [dm3] 3R_31862879_DEL [dm6]	CGCTGAATGTCGAGTGGTTT...	C	2.062e^-4	0.643	INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25435003	3R_25435003_SNP [dm3] 3R_29609281_SNP [dm6]	A	T	2.065e^-4	0.643	DOWNSTREAM Diedel2 INTRON alph
3L	2322563	3L_2322563_SNP [dm3] 3L_2322563_SNP [dm6]	G	A	2.073e^-4	0.643	UPSTREAM MsR1 INTERGENIC
3R	9892245	3R_9892245_SNP [dm3] 3R_14066523_SNP [dm6]	T	C	2.074e^-4	0.643	INTRON foxo
3R	23239120	3R_23239120_SNP [dm3] 3R_27413398_SNP [dm6]	T	G	2.076e^-4	0.643	INTRON side
3R	13976534	3R_13976534_SNP [dm3] 3R_18150812_SNP [dm6]	C	A	2.077e^-4	0.643	INTERGENIC
2L	19819037	2L_19819037_DEL [dm3] 2L_19819037_DEL [dm6]	CG	C	2.081e^-4	0.643	INTRON sick
3L	8888649	3L_8888649_SNP [dm3] 3L_8895549_SNP [dm6]	T	A	2.081e^-4	0.643	INTRON TrpA1
3L	14690726	3L_14690726_SNP [dm3] 3L_14697626_SNP [dm6]	T	C	2.087e^-4	0.643	NON_SYNONYMOUS_CODING CG17177 UPSTREAM CG13474 INTRON ome
3R	21193716	3R_21193716_SNP [dm3] 3R_25367994_SNP [dm6]	C	T	2.091e^-4	0.643	INTRON Fur1
2R	13849973	2R_13849973_SNP [dm3] 2R_17962468_SNP [dm6]	C	T	2.092e^-4	0.643	INTERGENIC
3L	13217714	3L_13217714_SNP [dm3] 3L_13224614_SNP [dm6]	G	A	2.094e^-4	0.643	INTERGENIC
2R	867202	2R_867202_SNP [dm3] 2R_4979697_SNP [dm6]	T	A	2.099e^-4	0.643	INTRON Ir41a	transposable element FlyBase
3R	17864071	3R_17864071_SNP [dm3] 3R_22038349_SNP [dm6]	G	T	2.104e^-4	0.643	UTR_3_PRIME pit
2L	14535657	2L_14535657_SNP [dm3] 2L_14535657_SNP [dm6]	G	C	2.106e^-4	0.643	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	16059464	3R_16059464_DEL [dm3] 3R_20233742_DEL [dm6]	AA	A	2.112e^-4	0.643	INTRON Nlg4
3L	5052544	3L_5052544_SNP [dm3] 3L_5052544_SNP [dm6]	T	A	2.115e^-4	0.643	INTRON Con
3L	13916652	3L_13916652_SNP [dm3] 3L_13923552_SNP [dm6]	A	G	2.116e^-4	0.643	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	4316184	3L_4316184_INS [dm3] 3L_4316184_INS [dm6]	T	TA	2.117e^-4	0.643	SPLICE_SITE_REGION Claspin INTRON Claspin
3L	3598783	3L_3598783_SNP [dm3] 3L_3598783_SNP [dm6]	T	C	2.118e^-4	0.643	INTRON Eip63E	TF binding site mE1_TFBS_cad
X	245477	X_245477_SNP [dm3] X_351444_SNP [dm6]	C	T	2.126e^-4	0.643	DOWNSTREAM CG3777 & 1 other INTRON CG32816
3R	22393391	3R_22393391_SNP [dm3] 3R_26567669_SNP [dm6]	A	G	2.130e^-4	0.643	SYNONYMOUS_CODING scrib UPSTREAM scrib	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1981812	2L_1981812_SNP [dm3] 2L_1981812_SNP [dm6]	C	T	2.136e^-4	0.643	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG7289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	14689202	3L_14689202_SNP [dm3] 3L_14696102_SNP [dm6]	C	T	2.137e^-4	0.643	DOWNSTREAM CG13474 INTRON ome
2R	1066372	2R_1066372_SNP [dm3] 2R_5178867_SNP [dm6]	G	C	2.140e^-4	0.643	INTRON Nipped-A
2L	4753775	2L_4753775_SNP [dm3] 2L_4753775_SNP [dm6]	A	T	2.141e^-4	0.643	INTRON CG15630
3R	26338274	3R_26338274_SNP [dm3] 3R_30512552_SNP [dm6]	A	T	2.142e^-4	0.643	UPSTREAM PH4alphaNE2 INTRON CG31524
2L	4429843	2L_4429843_SNP [dm3] 2L_4429843_SNP [dm6]	A	T	2.144e^-4	0.643	INTRON CG15431
3R	26056155	3R_26056155_SNP [dm3] 3R_30230433_SNP [dm6]	A	T	2.152e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	17132181	3L_17132181_SNP [dm3] 3L_17139081_SNP [dm6]	T	A	2.152e^-4	0.643	INTRON Rbp6
2L	16541982	2L_16541982_SNP [dm3] 2L_16541982_SNP [dm6]	T	A	2.153e^-4	0.643	UPSTREAM CG31816 INTERGENIC
2L	19819648	2L_19819648_SNP [dm3] 2L_19819648_SNP [dm6]	T	A	2.156e^-4	0.643	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	1101409	3L_1101409_SNP [dm3] 3L_1101409_SNP [dm6]	G	A	2.161e^-4	0.643	UPSTREAM bab1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	6574409	3L_6574409_SNP [dm3] 3L_6581309_SNP [dm6]	C	T	2.166e^-4	0.643	INTRON CG18769 & 1 other
3L	20596591	3L_20596591_SNP [dm3] 3L_20603491_SNP [dm6]	T	A	2.168e^-4	0.643	INTRON knrl	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3468652	2L_3468652_SNP [dm3] 2L_3468652_SNP [dm6]	C	T	2.170e^-4	0.643	SYNONYMOUS_CODING CG3238	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	18946380	3R_18946380_SNP [dm3] 3R_23120658_SNP [dm6]	C	T	2.172e^-4	0.643	SYNONYMOUS_CODING CenB1A UPSTREAM CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24378172	3R_24378172_SNP [dm3] 3R_28552450_SNP [dm6]	T	C	2.173e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22216662	3R_22216662_SNP [dm3] 3R_26390940_SNP [dm6]	G	A	2.175e^-4	0.643	INTERGENIC
3L	13254109	3L_13254109_SNP [dm3] 3L_13261009_SNP [dm6]	T	A	2.176e^-4	0.643	INTRON caps
3R	19005000	3R_19005000_SNP [dm3] 3R_23179278_SNP [dm6]	G	A	2.179e^-4	0.643	INTRON Irk1
3R	1171396	3R_1171396_SNP [dm3] 3R_5345674_SNP [dm6]	G	A	2.179e^-4	0.643	INTRON mtd
3L	7975827	3L_7975827_SNP [dm3] 3L_7982727_SNP [dm6]	A	C	2.181e^-4	0.643	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4313999	3L_4313999_SNP [dm3] 3L_4313999_SNP [dm6]	C	G	2.186e^-4	0.643	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9090174	2L_9090174_SNP [dm3] 2L_9090174_SNP [dm6]	A	T	2.188e^-4	0.643	DOWNSTREAM Toll-4 INTERGENIC
3L	1709859	3L_1709859_SNP [dm3] 3L_1709859_SNP [dm6]	G	A	2.189e^-4	0.643	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	4319631	3L_4319631_SNP [dm3] 3L_4319631_SNP [dm6]	A	T	2.195e^-4	0.643	INTRON CG32250	TF binding site mE1_TFBS_HSA
X	13610364	X_13610364_SNP [dm3] X_13716331_SNP [dm6]	G	C	2.198e^-4	0.643	INTRON CG9940 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4308776	3L_4308776_SNP [dm3] 3L_4308776_SNP [dm6]	T	G	2.199e^-4	0.643	INTERGENIC
3L	4314096	3L_4314096_SNP [dm3] 3L_4314096_SNP [dm6]	A	G	2.214e^-4	0.643	SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	9290304	2L_9290304_SNP [dm3] 2L_9290304_SNP [dm6]	A	G	2.216e^-4	0.643	INTRON Ggamma30A
3L	4313936	3L_4313936_SNP [dm3] 3L_4313936_SNP [dm6]	T	C	2.216e^-4	0.643	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	4314265	3L_4314265_SNP [dm3] 3L_4314265_SNP [dm6]	C	A	2.216e^-4	0.643	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	4314315	3L_4314315_SNP [dm3] 3L_4314315_SNP [dm6]	G	A	2.216e^-4	0.643	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	4314330	3L_4314330_SNP [dm3] 3L_4314330_SNP [dm6]	G	A	2.216e^-4	0.643	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	19819834	2L_19819834_SNP [dm3] 2L_19819834_SNP [dm6]	G	A	2.218e^-4	0.643	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	4313956	3L_4313956_SNP [dm3] 3L_4313956_SNP [dm6]	G	T	2.219e^-4	0.643	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2301945	2L_2301945_DEL [dm3] 2L_2301945_DEL [dm6]	AA	A	2.219e^-4	0.643	INTERGENIC
2L	12548345	2L_12548345_SNP [dm3] 2L_12548345_SNP [dm6]	T	C	2.226e^-4	0.643	INTERGENIC
3R	22504927	3R_22504927_SNP [dm3] 3R_26679205_SNP [dm6]	A	C	2.226e^-4	0.643	INTRON beat-VII	TF binding site mE1_TFBS_chinmo
3L	6309666	3L_6309666_SNP [dm3] 3L_6316566_SNP [dm6]	C	G	2.227e^-4	0.643	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	18915911	3R_18915911_SNP [dm3] 3R_23090189_SNP [dm6]	C	T	2.228e^-4	0.643	INTRON CG13830
3R	14550822	3R_14550822_SNP [dm3] 3R_18725100_SNP [dm6]	C	T	2.234e^-4	0.643	DOWNSTREAM CG7714 INTRON Cha
2R	10684241	2R_10684241_SNP [dm3] 2R_14796736_SNP [dm6]	A	T	2.246e^-4	0.643	INTRON kn
X	14524149	X_14524149_SNP [dm3] X_14630116_SNP [dm6]	T	G	2.249e^-4	0.643	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10705718	3L_10705718_SNP [dm3] 3L_10712618_SNP [dm6]	C	T	2.253e^-4	0.643	INTERGENIC
3L	4314361	3L_4314361_SNP [dm3] 3L_4314361_SNP [dm6]	G	C	2.253e^-4	0.643	NON_SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	13045287	3L_13045287_SNP [dm3] 3L_13052187_SNP [dm6]	T	A	2.255e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	13741077	3L_13741077_SNP [dm3] 3L_13747977_SNP [dm6]	C	T	2.259e^-4	0.643	INTRON bru-3
3L	5781244	3L_5781244_INS [dm3] 3L_5788144_INS [dm6]	T	TATGCAGA	2.280e^-4	0.643	INTERGENIC
2R	16798543	2R_16798543_SNP [dm3] 2R_20911038_SNP [dm6]	G	A	2.281e^-4	0.643	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14048150	3R_14048150_SNP [dm3] 3R_18222428_SNP [dm6]	G	A	2.285e^-4	0.643	SYNONYMOUS_CODING mTerf5 DOWNSTREAM CG7988	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	16494835	3R_16494835_SNP [dm3] 3R_20669113_SNP [dm6]	A	T	2.285e^-4	0.643	UPSTREAM Cpr92F INTERGENIC	TF binding site mE1_TFBS_cad
2L	7776672	2L_7776672_SNP [dm3] 2L_7776672_SNP [dm6]	T	C	2.285e^-4	0.643	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	14426860	2R_14426860_SNP [dm3] 2R_18539355_SNP [dm6]	C	T	2.286e^-4	0.643	UTR_3_PRIME CG45087 & 1 other UPSTREAM Rgk2
3R	25139189	3R_25139189_SNP [dm3] 3R_29313467_SNP [dm6]	C	G	2.287e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26804106	3R_26804106_SNP [dm3] 3R_30978384_SNP [dm6]	T	C	2.288e^-4	0.643	INTRON 5-HT7
3L	1269689	3L_1269689_SNP [dm3] 3L_1269689_SNP [dm6]	G	A	2.290e^-4	0.643	INTRON CG9134
2L	3467102	2L_3467102_SNP [dm3] 2L_3467102_SNP [dm6]	G	A	2.299e^-4	0.643	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	18856870	3R_18856870_SNP [dm3] 3R_23031148_SNP [dm6]	G	T	2.303e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	11482624	2L_11482624_SNP [dm3] 2L_11482624_SNP [dm6]	A	G	2.304e^-4	0.643	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	1198293	3R_1198293_DEL [dm3] 3R_5372571_DEL [dm6]	CAAT	C	2.313e^-4	0.643	DOWNSTREAM hd & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	9231207	3L_9231207_INS [dm3] 3L_9238107_INS [dm6]	T	TTGTAT	2.315e^-4	0.643	INTERGENIC
3R	7635349	3R_7635349_SNP [dm3] 3R_11809627_SNP [dm6]	G	A	2.316e^-4	0.643	INTRON ClC-a	TF binding site mE1_TFBS_cad
2L	20399421	2L_20399421_SNP [dm3] 2L_20399421_SNP [dm6]	C	A	2.316e^-4	0.643	UPSTREAM CG10947 INTRON CG10947
3L	1120423	3L_1120423_SNP [dm3] 3L_1120423_SNP [dm6]	T	A	2.317e^-4	0.643	INTERGENIC
3R	14623556	3R_14623556_SNP [dm3] 3R_18797834_SNP [dm6]	G	A	2.322e^-4	0.643	INTERGENIC
2L	9496232	2L_9496232_SNP [dm3] 2L_9496232_SNP [dm6]	A	G	2.325e^-4	0.643	UTR_5_PRIME CG33298	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	4315062	3L_4315062_SNP [dm3] 3L_4315062_SNP [dm6]	G	T	2.326e^-4	0.643	NON_SYNONYMOUS_CODING Claspin
2L	4753728	2L_4753728_SNP [dm3] 2L_4753728_SNP [dm6]	A	T	2.327e^-4	0.643	INTRON CG15630
2L	4753731	2L_4753731_DEL [dm3] 2L_4753731_DEL [dm6]	TA	T	2.327e^-4	0.643	INTRON CG15630
3L	4867395	3L_4867395_SNP [dm3] 3L_4867395_SNP [dm6]	C	T	2.328e^-4	0.643	INTRON CG17150
3L	4314956	3L_4314956_SNP [dm3] 3L_4314956_SNP [dm6]	A	C	2.330e^-4	0.643	NON_SYNONYMOUS_CODING Claspin
2L	7273887	2L_7273887_SNP [dm3] 2L_7273887_SNP [dm6]	T	A	2.333e^-4	0.643	INTRON Wnt4	TF binding site mE1_TFBS_HSA
3R	14574410	3R_14574410_SNP [dm3] 3R_18748688_SNP [dm6]	C	A	2.341e^-4	0.643	NON_SYNONYMOUS_CODING gwl	TF binding site mE1_TFBS_cad
2R	11809724	2R_11809724_SNP [dm3] 2R_15922219_SNP [dm6]	A	T	2.348e^-4	0.643	UPSTREAM sli DOWNSTREAM bdg INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4306169	3L_4306169_SNP [dm3] 3L_4306169_SNP [dm6]	C	T	2.349e^-4	0.643	INTRON dyl
3L	10882675	3L_10882675_SNP [dm3] 3L_10889575_SNP [dm6]	A	T	2.355e^-4	0.643	UPSTREAM Cpr67Fa1 INTERGENIC
3R	17860081	3R_17860081_SNP [dm3] 3R_22034359_SNP [dm6]	G	C	2.356e^-4	0.643	UTR_5_PRIME pit UPSTREAM Fadd & 2 others	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	14623497	3R_14623497_SNP [dm3] 3R_18797775_SNP [dm6]	A	T	2.357e^-4	0.643	INTERGENIC
3L	1674832	3L_1674832_SNP [dm3] 3L_1674832_SNP [dm6]	A	G	2.358e^-4	0.643	UTR_5_PRIME CG7991
3R	1191012	3R_1191012_SNP [dm3] 3R_5365290_SNP [dm6]	T	A	2.369e^-4	0.644	INTRON Cerk
3R	9718269	3R_9718269_SNP [dm3] 3R_13892547_SNP [dm6]	C	A	2.377e^-4	0.644	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9412646	2L_9412646_SNP [dm3] 2L_9412646_SNP [dm6]	A	C	2.382e^-4	0.644	INTRON Shawl
3L	7605170	3L_7605170_SNP [dm3] 3L_7612070_SNP [dm6]	A	T	2.384e^-4	0.644	INTRON CG33275
2L	3960324	2L_3960324_SNP [dm3] 2L_3960324_SNP [dm6]	G	T	2.387e^-4	0.644	INTRON fred
2R	10097301	2R_10097301_SNP [dm3] 2R_14209796_SNP [dm6]	G	A	2.392e^-4	0.644	INTRON Sox15	regulatory region REDfly_CRMs
3R	5404414	3R_5404414_SNP [dm3] 3R_9578692_SNP [dm6]	A	G	2.394e^-4	0.644	SYNONYMOUS_CODING CG8273 UPSTREAM Kap-alpha3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	11543092	3R_11543092_SNP [dm3] 3R_15717370_SNP [dm6]	G	T	2.394e^-4	0.644	UPSTREAM CG31294 INTERGENIC
3L	4308345	3L_4308345_SNP [dm3] 3L_4308345_SNP [dm6]	G	C	2.394e^-4	0.644	UPSTREAM dyl INTERGENIC
2L	22181886	2L_22181886_SNP [dm3] 2L_22181886_SNP [dm6]	G	T	2.406e^-4	0.645	INTRON CG3635
2L	14379925	2L_14379925_SNP [dm3] 2L_14379925_SNP [dm6]	T	C	2.408e^-4	0.645	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
2L	14419510	2L_14419510_SNP [dm3] 2L_14419510_SNP [dm6]	G	A	2.411e^-4	0.645	INTERGENIC
3R	11472755	3R_11472755_SNP [dm3] 3R_15647033_SNP [dm6]	T	C	2.417e^-4	0.645	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	969228	3L_969228_SNP [dm3] 3L_969228_SNP [dm6]	A	C	2.424e^-4	0.645	INTRON Glut1	TF binding site mE1_TFBS_cad
3L	9600044	3L_9600044_SNP [dm3] 3L_9606944_SNP [dm6]	A	G	2.427e^-4	0.645	INTRON CG3280
2L	2303233	2L_2303233_SNP [dm3] 2L_2303233_SNP [dm6]	A	T	2.428e^-4	0.645	INTERGENIC
3R	22188317	3R_22188317_MNP [dm3] 3R_26362595_MNP [dm6]	CAG	ATA	2.429e^-4	0.645	DOWNSTREAM CG33970 INTERGENIC
2R	18951892	2R_18951892_SNP [dm3] 2R_23064369_SNP [dm6]	A	C	2.430e^-4	0.645	UPSTREAM PPO3 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	9773407	3R_9773407_SNP [dm3] 3R_13947685_SNP [dm6]	C	G	2.430e^-4	0.645	UPSTREAM CG31517 INTERGENIC
2L	3457387	2L_3457387_SNP [dm3] 2L_3457387_SNP [dm6]	C	T	2.435e^-4	0.645	UTR_5_PRIME Sec5 UPSTREAM Cog3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17666341	3R_17666341_SNP [dm3] 3R_21840619_SNP [dm6]	C	G	2.442e^-4	0.646	INTERGENIC
3L	4318002	3L_4318002_SNP [dm3] 3L_4318002_SNP [dm6]	G	A	2.455e^-4	0.647	SYNONYMOUS_CODING Claspin UPSTREAM CG32250	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4313928	3L_4313928_SNP [dm3] 3L_4313928_SNP [dm6]	G	T	2.457e^-4	0.647	NON_SYNONYMOUS_CODING Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3R	14550841	3R_14550841_SNP [dm3] 3R_18725119_SNP [dm6]	C	T	2.458e^-4	0.647	DOWNSTREAM CG7714 INTRON Cha
2R	16761989	2R_16761989_INS [dm3] 2R_20874484_INS [dm6]	T	TAT	2.459e^-4	0.647	UPSTREAM Ipk1 INTRON Ipk1
3L	4316784	3L_4316784_SNP [dm3] 3L_4316784_SNP [dm6]	G	A	2.462e^-4	0.647	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25890533	3R_25890533_SNP [dm3] 3R_30064811_SNP [dm6]	A	T	2.480e^-4	0.649	INTRON sima	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5540120	3L_5540120_SNP [dm3] 3L_5547020_SNP [dm6]	C	G	2.491e^-4	0.649	INTRON CG10625
2L	2291253	2L_2291253_SNP [dm3] 2L_2291253_SNP [dm6]	A	C	2.491e^-4	0.649	UPSTREAM robl22E INTERGENIC
2L	2092262	2L_2092262_SNP [dm3] 2L_2092262_SNP [dm6]	T	A	2.492e^-4	0.649	INTRON dpr3
2L	10971717	2L_10971717_SNP [dm3] 2L_10971717_SNP [dm6]	A	G	2.492e^-4	0.649	SYNONYMOUS_CODING YL-1 UPSTREAM CG16743
3R	4373063	3R_4373063_SNP [dm3] 3R_8547341_SNP [dm6]	G	A	2.495e^-4	0.649	EXON CR45574
2R	8976474	2R_8976474_SNP [dm3] 2R_13088969_SNP [dm6]	T	A	2.500e^-4	0.649	INTERGENIC
3R	17653527	3R_17653527_SNP [dm3] 3R_21827805_SNP [dm6]	T	C	2.503e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	22766765	3R_22766765_SNP [dm3] 3R_26941043_SNP [dm6]	T	A	2.509e^-4	0.649	INTRON sda
3R	15909692	3R_15909692_SNP [dm3] 3R_20083970_SNP [dm6]	A	T	2.515e^-4	0.649	INTERGENIC
3R	20337761	3R_20337761_SNP [dm3] 3R_24512039_SNP [dm6]	T	A	2.516e^-4	0.649	UTR_3_PRIME nAChRbeta2 INTRON nAChRbeta2
2L	1842381	2L_1842381_SNP [dm3] 2L_1842381_SNP [dm6]	T	C	2.532e^-4	0.649	INTRON wry
3R	1197096	3R_1197096_SNP [dm3] 3R_5371374_SNP [dm6]	A	G	2.534e^-4	0.649	NON_SYNONYMOUS_CODING CG34277 SPLICE_SITE_REGION CG31542 & 1 other UTR_3_PRIME CG31542 UPSTREAM RpII18 DOWNSTREAM CG31542	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1268390	3L_1268390_SNP [dm3] 3L_1268390_SNP [dm6]	G	A	2.547e^-4	0.649	INTRON CG9134
3L	4316682	3L_4316682_SNP [dm3] 3L_4316682_SNP [dm6]	G	A	2.548e^-4	0.649	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5775835	3L_5775835_SNP [dm3] 3L_5782735_SNP [dm6]	A	T	2.549e^-4	0.649	NON_SYNONYMOUS_CODING PGRP-LD UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
3L	4302635	3L_4302635_SNP [dm3] 3L_4302635_SNP [dm6]	C	A	2.549e^-4	0.649	INTRON dyl
2L	1720426	2L_1720426_SNP [dm3] 2L_1720426_SNP [dm6]	C	A	2.551e^-4	0.649	INTRON Rim2
3L	4314207	3L_4314207_SNP [dm3] 3L_4314207_SNP [dm6]	G	A	2.552e^-4	0.649	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
3L	798800	3L_798800_INS [dm3] 3L_798800_INS [dm6]	A	ACATAAACATAAACGTTATT...	2.555e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	19064897	3L_19064897_SNP [dm3] 3L_19071797_SNP [dm6]	T	C	2.559e^-4	0.649	INTRON Mkp3
2L	14502714	2L_14502714_SNP [dm3] 2L_14502714_SNP [dm6]	A	C	2.561e^-4	0.649	INTERGENIC
2L	10525328	2L_10525328_SNP [dm3] 2L_10525328_SNP [dm6]	G	C	2.562e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5398647	3R_5398647_INS [dm3] 3R_9572925_INS [dm6]	A	ACATAAGA	2.568e^-4	0.649	INTRON CG9399	TF binding site BDTNP1_TFBS_dl
3R	5398650	3R_5398650_MNP [dm3] 3R_9572928_MNP [dm6]	AGG	CCT	2.568e^-4	0.649	INTRON CG9399	TF binding site BDTNP1_TFBS_dl
2L	2303254	2L_2303254_SNP [dm3] 2L_2303254_SNP [dm6]	C	G	2.582e^-4	0.649	INTERGENIC
2L	9459303	2L_9459303_SNP [dm3] 2L_9459303_SNP [dm6]	A	G	2.595e^-4	0.649	INTRON numb	TF binding site BDTNP1_TFBS_dl
3R	18856886	3R_18856886_SNP [dm3] 3R_23031164_SNP [dm6]	C	T	2.596e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26254074	3R_26254074_SNP [dm3] 3R_30428352_SNP [dm6]	A	G	2.602e^-4	0.649	UPSTREAM CG15533 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18777775	2R_18777775_SNP [dm3] 2R_22890252_SNP [dm6]	A	T	2.602e^-4	0.649	INTRON MED23	TF binding site mE1_TFBS_cad
3L	4314603	3L_4314603_SNP [dm3] 3L_4314603_SNP [dm6]	C	T	2.610e^-4	0.649	SYNONYMOUS_CODING Claspin	TF binding site mE1_TFBS_sens
2L	11067192	2L_11067192_INS [dm3] 2L_11067192_INS [dm6]	G	GG	2.616e^-4	0.649	UPSTREAM Samuel INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	6217377	3R_6217377_SNP [dm3] 3R_10391655_SNP [dm6]	G	A	2.619e^-4	0.649	INTRON cwo
3L	13167583	3L_13167583_SNP [dm3] 3L_13174483_SNP [dm6]	A	T	2.622e^-4	0.649	NON_SYNONYMOUS_CODING snky
2L	3154508	2L_3154508_SNP [dm3] 2L_3154508_SNP [dm6]	C	T	2.628e^-4	0.649	INTRON Mad
2R	11928894	2R_11928894_SNP [dm3] 2R_16041389_SNP [dm6]	A	C	2.628e^-4	0.649	SYNONYMOUS_CODING SP2353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17000534	2R_17000534_SNP [dm3] 2R_21113029_SNP [dm6]	T	A	2.631e^-4	0.649	INTRON ktub
2R	1066681	2R_1066681_SNP [dm3] 2R_5179176_SNP [dm6]	C	T	2.635e^-4	0.649	INTRON Nipped-A	transposable element FlyBase
X	3253591	X_3253591_SNP [dm3] X_3359558_SNP [dm6]	A	C	2.636e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	14082460	2L_14082460_SNP [dm3] 2L_14082460_SNP [dm6]	C	T	2.637e^-4	0.649	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22584610	3R_22584610_SNP [dm3] 3R_26758888_SNP [dm6]	G	A	2.637e^-4	0.649	UPSTREAM CR45562 INTERGENIC
3R	13351759	3R_13351759_INS [dm3] 3R_17526037_INS [dm6]	C	CGC	2.642e^-4	0.649	INTERGENIC
3L	10882611	3L_10882611_SNP [dm3] 3L_10889511_SNP [dm6]	A	T	2.642e^-4	0.649	UPSTREAM Cpr67Fa1 INTERGENIC
2L	1750551	2L_1750551_SNP [dm3] 2L_1750551_SNP [dm6]	A	G	2.651e^-4	0.649	UTR_3_PRIME CG17646 DOWNSTREAM CG17712
3L	9231284	3L_9231284_SNP [dm3] 3L_9238184_SNP [dm6]	G	A	2.651e^-4	0.649	INTERGENIC
3L	3124132	3L_3124132_SNP [dm3] 3L_3124132_SNP [dm6]	T	G	2.657e^-4	0.649	UPSTREAM prominin-like INTRON prominin-like
2L	1304082	2L_1304082_SNP [dm3] 2L_1304082_SNP [dm6]	C	T	2.658e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19888472	2R_19888472_SNP [dm3] 2R_24000949_SNP [dm6]	A	T	2.660e^-4	0.649	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14088750	3R_14088750_DEL [dm3] 3R_18263028_DEL [dm6]	ACAA	A	2.661e^-4	0.649	INTERGENIC
3R	24800359	3R_24800359_SNP [dm3] 3R_28974637_SNP [dm6]	T	C	2.667e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10416817	3R_10416817_SNP [dm3] 3R_14591095_SNP [dm6]	G	A	2.679e^-4	0.649	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	4459905	X_4459905_INS [dm3] X_4565872_INS [dm6]	A	AA	2.680e^-4	0.649	INTRON CR32773	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22522219	3R_22522219_DEL [dm3] 3R_26696497_DEL [dm6]	AAA	A	2.682e^-4	0.649	INTERGENIC
2L	2303263	2L_2303263_SNP [dm3] 2L_2303263_SNP [dm6]	C	T	2.685e^-4	0.649	INTERGENIC
2R	17111299	2R_17111299_SNP [dm3] 2R_21223794_SNP [dm6]	G	A	2.690e^-4	0.649	UTR_5_PRIME ASPP INTRON ASPP
X	10056347	X_10056347_SNP [dm3] X_10162314_SNP [dm6]	C	T	2.699e^-4	0.649	INTRON CR44894 & 1 other
3R	14188472	3R_14188472_SNP [dm3] 3R_18362750_SNP [dm6]	G	A	2.703e^-4	0.649	NON_SYNONYMOUS_CODING CG7669	TF binding site mE1_TFBS_cad
2R	17138654	2R_17138654_SNP [dm3] 2R_21251149_SNP [dm6]	G	C	2.707e^-4	0.649	UTR_5_PRIME ASPP UPSTREAM ASPP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	17863305	3R_17863305_SNP [dm3] 3R_22037583_SNP [dm6]	C	T	2.714e^-4	0.649	SYNONYMOUS_CODING pit	TF binding site mE1_TFBS_sens
3L	20346399	3L_20346399_SNP [dm3] 3L_20353299_SNP [dm6]	A	G	2.714e^-4	0.649	UPSTREAM CG5618 DOWNSTREAM eRF1 INTRON eRF1
2L	16369024	2L_16369024_SNP [dm3] 2L_16369024_SNP [dm6]	A	T	2.716e^-4	0.649	INTERGENIC
3R	5922905	3R_5922905_SNP [dm3] 3R_10097183_SNP [dm6]	A	G	2.716e^-4	0.649	EXON CR43459
2L	9404811	2L_9404811_SNP [dm3] 2L_9404811_SNP [dm6]	G	T	2.725e^-4	0.649	INTRON Shawl
3R	17637974	3R_17637974_SNP [dm3] 3R_21812252_SNP [dm6]	C	T	2.727e^-4	0.649	INTRON CASK
3L	1674835	3L_1674835_SNP [dm3] 3L_1674835_SNP [dm6]	C	T	2.737e^-4	0.649	UTR_5_PRIME CG7991
2R	17642269	2R_17642269_SNP [dm3] 2R_21754764_SNP [dm6]	G	T	2.741e^-4	0.649	INTERGENIC
2L	3461729	2L_3461729_SNP [dm3] 2L_3461729_SNP [dm6]	T	G	2.743e^-4	0.649	DOWNSTREAM msl-2 INTRON CG3246	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4733493	2L_4733493_SNP [dm3] 2L_4733493_SNP [dm6]	G	T	2.744e^-4	0.649	NON_SYNONYMOUS_CODING CG15631	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10187329	2L_10187329_SNP [dm3] 2L_10187329_SNP [dm6]	C	A	2.749e^-4	0.649	INTRON Sur
3L	13741283	3L_13741283_SNP [dm3] 3L_13748183_SNP [dm6]	G	C	2.749e^-4	0.649	INTRON bru-3
3L	4314963	3L_4314963_SNP [dm3] 3L_4314963_SNP [dm6]	T	A	2.750e^-4	0.649	SYNONYMOUS_CODING Claspin
2R	8548581	2R_8548581_SNP [dm3] 2R_12661076_SNP [dm6]	C	T	2.751e^-4	0.649	SYNONYMOUS_CODING nemy UTR_5_PRIME nemy
3L	5419057	3L_5419057_SNP [dm3] 3L_5425957_SNP [dm6]	A	C	2.753e^-4	0.649	INTRON CG34391
X	15552653	X_15552653_SNP [dm3] X_15658620_SNP [dm6]	T	C	2.758e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_Kr
2L	3447149	2L_3447149_SNP [dm3] 2L_3447149_SNP [dm6]	G	A	2.763e^-4	0.649	SYNONYMOUS_CODING CG2772	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22584609	3R_22584609_SNP [dm3] 3R_26758887_SNP [dm6]	C	T	2.764e^-4	0.649	UPSTREAM CR45562 INTERGENIC
3L	1099962	3L_1099962_SNP [dm3] 3L_1099962_SNP [dm6]	G	C	2.768e^-4	0.649	SYNONYMOUS_CODING bab1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19022986	2R_19022986_INS [dm3] 2R_23135463_INS [dm6]	T	TTATGAATG	2.770e^-4	0.649	INTERGENIC
2R	13418928	2R_13418928_SNP [dm3] 2R_17531423_SNP [dm6]	C	T	2.775e^-4	0.649	SYNONYMOUS_CODING Patronin	TF binding site mE1_TFBS_sens
3L	13916803	3L_13916803_SNP [dm3] 3L_13923703_SNP [dm6]	T	A	2.775e^-4	0.649	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	25326709	3R_25326709_SNP [dm3] 3R_29500987_SNP [dm6]	T	C	2.799e^-4	0.649	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17066401	3R_17066401_SNP [dm3] 3R_21240679_SNP [dm6]	T	G	2.799e^-4	0.649	INTERGENIC	regulatory region REDfly_CRMs
X	5270845	X_5270845_SNP [dm3] X_5376812_SNP [dm6]	A	T	2.801e^-4	0.649	INTRON SK
3L	1263408	3L_1263408_SNP [dm3] 3L_1263408_SNP [dm6]	C	T	2.809e^-4	0.649	INTRON CG9134
2R	14558686	2R_14558686_SNP [dm3] 2R_18671181_SNP [dm6]	T	C	2.818e^-4	0.649	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	13167587	3L_13167587_SNP [dm3] 3L_13174487_SNP [dm6]	C	T	2.826e^-4	0.649	NON_SYNONYMOUS_CODING snky
2L	19819770	2L_19819770_SNP [dm3] 2L_19819770_SNP [dm6]	A	C	2.829e^-4	0.649	INTRON sick	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	8888647	3L_8888647_SNP [dm3] 3L_8895547_SNP [dm6]	G	A	2.831e^-4	0.649	SPLICE_SITE_REGION TrpA1 INTRON TrpA1
3R	18980790	3R_18980790_SNP [dm3] 3R_23155068_SNP [dm6]	A	G	2.833e^-4	0.649	INTRON unk	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	24243775	3R_24243775_SNP [dm3] 3R_28418053_SNP [dm6]	T	A	2.842e^-4	0.649	UPSTREAM beat-VI INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4316157	3L_4316157_SNP [dm3] 3L_4316157_SNP [dm6]	T	C	2.843e^-4	0.649	INTRON Claspin
3L	21365562	3L_21365562_SNP [dm3] 3L_21372462_SNP [dm6]	A	G	2.854e^-4	0.649	INTERGENIC
2L	11120850	2L_11120850_SNP [dm3] 2L_11120850_SNP [dm6]	G	T	2.856e^-4	0.649	SYNONYMOUS_CODING CG14921 UPSTREAM CG6230	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1198387	3R_1198387_SNP [dm3] 3R_5372665_SNP [dm6]	C	A	2.863e^-4	0.649	UTR_3_PRIME hd DOWNSTREAM CG31542 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12711035	3L_12711035_SNP [dm3] 3L_12717935_SNP [dm6]	T	A	2.867e^-4	0.649	INTERGENIC
3L	10882656	3L_10882656_SNP [dm3] 3L_10889556_SNP [dm6]	T	G	2.871e^-4	0.649	UPSTREAM Cpr67Fa1 INTERGENIC
2L	10187281	2L_10187281_SNP [dm3] 2L_10187281_SNP [dm6]	C	T	2.875e^-4	0.649	INTRON Sur
3R	23671200	3R_23671200_SNP [dm3] 3R_27845478_SNP [dm6]	G	A	2.876e^-4	0.649	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
3L	4316177	3L_4316177_SNP [dm3] 3L_4316177_SNP [dm6]	G	T	2.876e^-4	0.649	INTRON Claspin
3L	4313491	3L_4313491_SNP [dm3] 3L_4313491_SNP [dm6]	A	G	2.878e^-4	0.649	UTR_5_PRIME Claspin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14048198	3R_14048198_SNP [dm3] 3R_18222476_SNP [dm6]	T	C	2.885e^-4	0.649	SYNONYMOUS_CODING mTerf5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10882577	3L_10882577_SNP [dm3] 3L_10889477_SNP [dm6]	T	C	2.889e^-4	0.649	UPSTREAM Cpr67Fa1 INTERGENIC
2L	5337807	2L_5337807_SNP [dm3] 2L_5337807_SNP [dm6]	A	G	2.891e^-4	0.649	UTR_5_PRIME fusl INTRON fusl
2R	16795866	2R_16795866_SNP [dm3] 2R_20908361_SNP [dm6]	C	A	2.894e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	8713682	2L_8713682_SNP [dm3] 2L_8713682_SNP [dm6]	A	T	2.896e^-4	0.649	INTRON raw
2R	18886498	2R_18886498_SNP [dm3] 2R_22998975_SNP [dm6]	C	T	2.902e^-4	0.649	UPSTREAM CG9896 INTRON twi
3R	17056362	3R_17056362_SNP [dm3] 3R_21230640_SNP [dm6]	A	T	2.907e^-4	0.649	INTRON e	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12140398	3R_12140398_SNP [dm3] 3R_16314676_SNP [dm6]	T	C	2.909e^-4	0.649	SYNONYMOUS_CODING Sulf1	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	19180874	3R_19180874_SNP [dm3] 3R_23355152_SNP [dm6]	T	C	2.911e^-4	0.649	UTR_3_PRIME DNApol-epsilon DOWNSTREAM ATPsyn-Cf6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20271995	3L_20271995_SNP [dm3] 3L_20278895_SNP [dm6]	C	T	2.914e^-4	0.649	INTRON gogo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2025667	3L_2025667_SNP [dm3] 3L_2025667_SNP [dm6]	C	G	2.918e^-4	0.649	INTERGENIC
2R	1066409	2R_1066409_SNP [dm3] 2R_5178904_SNP [dm6]	A	C	2.920e^-4	0.649	INTRON Nipped-A
3R	14623691	3R_14623691_INS [dm3] 3R_18797969_INS [dm6]	T	TGT	2.920e^-4	0.649	INTERGENIC
3L	17829566	3L_17829566_SNP [dm3] 3L_17836466_SNP [dm6]	C	G	2.925e^-4	0.649	INTRON Grd
2L	19843543	2L_19843543_SNP [dm3] 2L_19843543_SNP [dm6]	A	G	2.925e^-4	0.649	INTRON sick
3R	17865245	3R_17865245_SNP [dm3] 3R_22039523_SNP [dm6]	A	T	2.931e^-4	0.649	DOWNSTREAM pit INTERGENIC
3R	21996730	3R_21996730_SNP [dm3] 3R_26171008_SNP [dm6]	A	C	2.932e^-4	0.649	UTR_5_PRIME CG31323 UPSTREAM CG31323
3L	2636487	3L_2636487_SNP [dm3] 3L_2636487_SNP [dm6]	T	A	2.936e^-4	0.649	UPSTREAM MEP-1 INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	16795656	2R_16795656_SNP [dm3] 2R_20908151_SNP [dm6]	G	T	2.936e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	11595989	3R_11595989_SNP [dm3] 3R_15770267_SNP [dm6]	T	C	2.943e^-4	0.649	INTERGENIC
2R	5563194	2R_5563194_DEL [dm3] 2R_9675689_DEL [dm6]	AAA	G	2.943e^-4	0.649	INTRON Mmp2
3L	12092820	3L_12092820_DEL [dm3] 3L_12099720_DEL [dm6]	AA	A	2.945e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11294949	2R_11294949_SNP [dm3] 2R_15407444_SNP [dm6]	C	T	2.950e^-4	0.649	INTRON CG43729
2R	16794047	2R_16794047_SNP [dm3] 2R_20906542_SNP [dm6]	G	A	2.953e^-4	0.649	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	3470607	2L_3470607_SNP [dm3] 2L_3470607_SNP [dm6]	T	C	2.959e^-4	0.649	NON_SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	11422037	2R_11422037_SNP [dm3] 2R_15534532_SNP [dm6]	G	A	2.962e^-4	0.649	INTRON CG30471
3R	21217519	3R_21217519_SNP [dm3] 3R_25391797_SNP [dm6]	T	C	2.963e^-4	0.649	INTRON Fur1
2L	20824694	2L_20824694_SNP [dm3] 2L_20824694_SNP [dm6]	A	G	2.966e^-4	0.649	UTR_5_PRIME CG9331 UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	2301948	2L_2301948_SNP [dm3] 2L_2301948_SNP [dm6]	A	G	2.967e^-4	0.649	INTERGENIC
2L	7998423	2L_7998423_SNP [dm3] 2L_7998423_SNP [dm6]	T	A	2.968e^-4	0.649	UPSTREAM CG7227 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
3R	26585208	3R_26585208_SNP [dm3] 3R_30759486_SNP [dm6]	G	C	2.972e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
2L	14121180	2L_14121180_SNP [dm3] 2L_14121180_SNP [dm6]	A	T	2.976e^-4	0.649	INTERGENIC
3L	13165746	3L_13165746_SNP [dm3] 3L_13172646_SNP [dm6]	G	A	2.979e^-4	0.649	INTERGENIC
2L	18938096	2L_18938096_SNP [dm3] 2L_18938096_SNP [dm6]	A	C	2.982e^-4	0.649	INTRON ssp3
3L	2859465	3L_2859465_SNP [dm3] 3L_2859465_SNP [dm6]	G	A	2.987e^-4	0.649	INTRON CG43444
3R	18946281	3R_18946281_SNP [dm3] 3R_23120559_SNP [dm6]	T	G	2.990e^-4	0.649	SPLICE_SITE_REGION CenB1A UPSTREAM CenB1A INTRON CenB1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	7035431	2L_7035431_SNP [dm3] 2L_7035431_SNP [dm6]	A	C	2.992e^-4	0.649	NON_SYNONYMOUS_CODING CG11266 UTR_3_PRIME CG11266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7321052	2L_7321052_SNP [dm3] 2L_7321052_SNP [dm6]	A	G	2.993e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8925257	2R_8925257_SNP [dm3] 2R_13037752_SNP [dm6]	C	T	2.995e^-4	0.649	INTERGENIC
3R	24141215	3R_24141215_SNP [dm3] 3R_28315493_SNP [dm6]	C	T	3.008e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_inv
3L	5052763	3L_5052763_SNP [dm3] 3L_5052763_SNP [dm6]	G	A	3.013e^-4	0.649	INTRON Con
3R	4674721	3R_4674721_SNP [dm3] 3R_8848999_SNP [dm6]	A	G	3.016e^-4	0.649	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9600484	3L_9600484_SNP [dm3] 3L_9607384_SNP [dm6]	A	T	3.017e^-4	0.649	INTRON CG3280
3L	12363796	3L_12363796_SNP [dm3] 3L_12370696_SNP [dm6]	G	A	3.017e^-4	0.649	INTRON Ncc69	TF binding site mE1_TFBS_HSA
3L	3210468	3L_3210468_SNP [dm3] 3L_3210468_SNP [dm6]	T	G	3.019e^-4	0.649	SYNONYMOUS_CODING gry DOWNSTREAM CG14967
3L	12400886	3L_12400886_SNP [dm3] 3L_12407786_SNP [dm6]	T	C	3.024e^-4	0.649	INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	2709050	3R_2709050_SNP [dm3] 3R_6883328_SNP [dm6]	A	T	3.025e^-4	0.649	INTRON CR44931	regulatory region REDfly_CRMs
2L	15546760	2L_15546760_SNP [dm3] 2L_15546760_SNP [dm6]	C	A	3.026e^-4	0.649	UPSTREAM Skadu INTERGENIC
3L	7102901	3L_7102901_SNP [dm3] 3L_7109801_SNP [dm6]	A	C	3.026e^-4	0.649	INTRON form3
3R	4755380	3R_4755380_SNP [dm3] 3R_8929658_SNP [dm6]	T	G	3.027e^-4	0.649	INTRON pyd
3R	24140564	3R_24140564_SNP [dm3] 3R_28314842_SNP [dm6]	T	A	3.027e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2L	10318412	2L_10318412_SNP [dm3] 2L_10318412_SNP [dm6]	C	T	3.029e^-4	0.649	NON_SYNONYMOUS_CODING CG5381 DOWNSTREAM CG4972	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20664048	2L_20664048_SNP [dm3] 2L_20664048_SNP [dm6]	T	A	3.029e^-4	0.649	NON_SYNONYMOUS_CODING CG31678 UPSTREAM CR45004	TF binding site mE1_TFBS_cad
X	5571916	X_5571916_SNP [dm3] X_5677883_SNP [dm6]	G	A	3.030e^-4	0.649	UPSTREAM Tre1 INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1962645	2L_1962645_SNP [dm3] 2L_1962645_SNP [dm6]	C	A	3.033e^-4	0.649	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7526804	2L_7526804_SNP [dm3] 2L_7526804_SNP [dm6]	C	G	3.034e^-4	0.649	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19396678	X_19396678_SNP [dm3] X_19502645_SNP [dm6]	T	C	3.036e^-4	0.649	INTRON Pfrx & 1 other	transposable element FlyBase
2L	15101633	2L_15101633_DEL [dm3] 2L_15101633_DEL [dm6]	TAGATT	T	3.037e^-4	0.649	INTERGENIC
3R	23938649	3R_23938649_SNP [dm3] 3R_28112927_SNP [dm6]	A	G	3.043e^-4	0.649	INTERGENIC
3R	21669667	3R_21669667_SNP [dm3] 3R_25843945_SNP [dm6]	C	A	3.044e^-4	0.649	EXON CR45653
2R	4943474	2R_4943474_SNP [dm3] 2R_9055969_SNP [dm6]	G	A	3.045e^-4	0.649	INTRON CG13743	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3475801	2R_3475801_SNP [dm3] 2R_7588296_SNP [dm6]	T	C	3.047e^-4	0.649	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
3R	6217387	3R_6217387_SNP [dm3] 3R_10391665_SNP [dm6]	A	G	3.059e^-4	0.649	INTRON cwo
3L	1263497	3L_1263497_SNP [dm3] 3L_1263497_SNP [dm6]	A	T	3.062e^-4	0.649	INTRON CG9134
3R	22188307	3R_22188307_SNP [dm3] 3R_26362585_SNP [dm6]	C	G	3.067e^-4	0.649	UTR_3_PRIME CG33970 DOWNSTREAM CG33970
2L	6768707	2L_6768707_SNP [dm3] 2L_6768707_SNP [dm6]	A	T	3.071e^-4	0.649	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo
2R	10675550	2R_10675550_SNP [dm3] 2R_14788045_SNP [dm6]	A	G	3.073e^-4	0.649	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13449087	2R_13449087_SNP [dm3] 2R_17561582_SNP [dm6]	C	T	3.074e^-4	0.649	SYNONYMOUS_CODING Klp54D
3L	4319585	3L_4319585_SNP [dm3] 3L_4319585_SNP [dm6]	C	G	3.079e^-4	0.649	DOWNSTREAM Claspin INTRON CG32250	TF binding site mE1_TFBS_HSA
3L	12812813	3L_12812813_SNP [dm3] 3L_12819713_SNP [dm6]	A	T	3.087e^-4	0.649	NON_SYNONYMOUS_CODING CG42588
3L	8680649	3L_8680649_SNP [dm3] 3L_8687549_SNP [dm6]	G	T	3.096e^-4	0.649	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10161472	3L_10161472_SNP [dm3] 3L_10168372_SNP [dm6]	C	T	3.097e^-4	0.649	INTRON dpr10
X	3253533	X_3253533_SNP [dm3] X_3359500_SNP [dm6]	T	C	3.104e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14493729	2R_14493729_DEL [dm3] 2R_18606224_DEL [dm6]	CTAATGGGTATC...	C	3.106e^-4	0.649	INTRON GEFmeso	TF binding site mE1_TFBS_sbb
2R	14908148	2R_14908148_SNP [dm3] 2R_19020643_SNP [dm6]	G	A	3.110e^-4	0.649	INTERGENIC
2R	13419768	2R_13419768_SNP [dm3] 2R_17532263_SNP [dm6]	G	T	3.120e^-4	0.649	INTRON Patronin	TF binding site mE1_TFBS_sens
3R	17069088	3R_17069088_SNP [dm3] 3R_21243366_SNP [dm6]	A	T	3.124e^-4	0.649	INTRON CG5892	TF binding site mE1_TFBS_inv
3L	2859694	3L_2859694_SNP [dm3] 3L_2859694_SNP [dm6]	G	A	3.124e^-4	0.649	INTRON CG43444	TF binding site mE1_TFBS_chinmo
2L	5428154	2L_5428154_SNP [dm3] 2L_5428154_SNP [dm6]	G	A	3.129e^-4	0.649	INTERGENIC
3R	18287060	3R_18287060_SNP [dm3] 3R_22461338_SNP [dm6]	C	T	3.131e^-4	0.649	SYNONYMOUS_CODING Rpn7 DOWNSTREAM CG34376	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
3L	1265157	3L_1265157_SNP [dm3] 3L_1265157_SNP [dm6]	G	C	3.133e^-4	0.649	UPSTREAM CG9134 INTRON CG9134
2R	13331104	2R_13331104_SNP [dm3] 2R_17443599_SNP [dm6]	C	T	3.134e^-4	0.649	INTRON EDTP
2R	19507514	2R_19507514_SNP [dm3] 2R_23619991_SNP [dm6]	G	A	3.137e^-4	0.649	INTERGENIC
3R	7181545	3R_7181545_SNP [dm3] 3R_11355823_SNP [dm6]	G	C	3.140e^-4	0.649	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21568288	3R_21568288_SNP [dm3] 3R_25742566_SNP [dm6]	A	T	3.142e^-4	0.649	INTRON LpR1
X	2512769	X_2512769_SNP [dm3] X_2618736_SNP [dm6]	G	A	3.143e^-4	0.649	SYNONYMOUS_CODING Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	4674701	3R_4674701_SNP [dm3] 3R_8848979_SNP [dm6]	A	T	3.149e^-4	0.649	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13439084	2L_13439084_SNP [dm3] 2L_13439084_SNP [dm6]	A	C	3.153e^-4	0.649	SYNONYMOUS_CODING Tehao INTRON CG42784 EXON CR45683	TF binding site mE1_TFBS_cad
2L	6463371	2L_6463371_SNP [dm3] 2L_6463371_SNP [dm6]	C	T	3.153e^-4	0.649	NON_SYNONYMOUS_CODING CG16947	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9984424	3L_9984424_SNP [dm3] 3L_9991324_SNP [dm6]	C	T	3.154e^-4	0.649	INTRON dpr6
3L	10592100	3L_10592100_SNP [dm3] 3L_10599000_SNP [dm6]	A	T	3.156e^-4	0.649	INTERGENIC
2L	14121243	2L_14121243_SNP [dm3] 2L_14121243_SNP [dm6]	G	A	3.157e^-4	0.649	INTERGENIC
3R	14094716	3R_14094716_SNP [dm3] 3R_18268994_SNP [dm6]	C	A	3.158e^-4	0.649	INTRON CG18599	TF binding site mE1_TFBS_inv
3R	10283876	3R_10283876_SNP [dm3] 3R_14458154_SNP [dm6]	A	C	3.159e^-4	0.649	INTRON cv-c	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5745003	3R_5745003_SNP [dm3] 3R_9919281_SNP [dm6]	G	A	3.163e^-4	0.649	INTRON Glut4EF
3L	7975835	3L_7975835_SNP [dm3] 3L_7982735_SNP [dm6]	T	C	3.164e^-4	0.649	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15481424	2L_15481424_SNP [dm3] 2L_15481424_SNP [dm6]	A	G	3.165e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17642719	2R_17642719_SNP [dm3] 2R_21755214_SNP [dm6]	T	C	3.168e^-4	0.649	INTERGENIC
3R	14623513	3R_14623513_SNP [dm3] 3R_18797791_SNP [dm6]	T	C	3.173e^-4	0.649	INTERGENIC
2R	14495277	2R_14495277_SNP [dm3] 2R_18607772_SNP [dm6]	A	T	3.179e^-4	0.649	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14558966	3R_14558966_INS [dm3] 3R_18733244_INS [dm6]	A	AA	3.181e^-4	0.649	UTR_3_PRIME Mekk1 DOWNSTREAM Cha & 1 other
2R	16795797	2R_16795797_SNP [dm3] 2R_20908292_SNP [dm6]	A	G	3.186e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18951906	2R_18951906_SNP [dm3] 2R_23064383_SNP [dm6]	A	C	3.187e^-4	0.649	UPSTREAM PPO3 & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	433820	3L_433820_SNP [dm3] 3L_433820_SNP [dm6]	C	A	3.201e^-4	0.649	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	5299403	3R_5299403_SNP [dm3] 3R_9473681_SNP [dm6]	T	A	3.204e^-4	0.649	INTRON CG16779
2R	9738100	2R_9738100_SNP [dm3] 2R_13850595_SNP [dm6]	A	G	3.212e^-4	0.649	SYNONYMOUS_CODING CG30485 DOWNSTREAM CG30484
3R	26057652	3R_26057652_SNP [dm3] 3R_30231930_SNP [dm6]	A	C	3.213e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_inv
3L	4310694	3L_4310694_SNP [dm3] 3L_4310694_SNP [dm6]	G	A	3.213e^-4	0.649	INTERGENIC
3R	1205980	3R_1205980_SNP [dm3] 3R_5380258_SNP [dm6]	A	T	3.220e^-4	0.649	INTRON kkv	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	1674848	3L_1674848_SNP [dm3] 3L_1674848_SNP [dm6]	G	C	3.221e^-4	0.649	UTR_5_PRIME CG7991
3L	9596445	3L_9596445_SNP [dm3] 3L_9603345_SNP [dm6]	A	G	3.224e^-4	0.649	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3R	22412353	3R_22412353_SNP [dm3] 3R_26586631_SNP [dm6]	T	A	3.230e^-4	0.649	NON_SYNONYMOUS_CODING scrib INTRON scrib	TF binding site mE1_TFBS_cad
2L	9125492	2L_9125492_SNP [dm3] 2L_9125492_SNP [dm6]	G	T	3.235e^-4	0.649	UPSTREAM CG32982 DOWNSTREAM CR44615 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	6340428	3R_6340428_DEL [dm3] 3R_10514706_DEL [dm6]	GCCGCTACCTTAGG...	G	3.236e^-4	0.649	INTRON hth	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10076246	3R_10076246_SNP [dm3] 3R_14250524_SNP [dm6]	G	T	3.243e^-4	0.649	DOWNSTREAM Aats-met INTERGENIC
3L	13167502	3L_13167502_SNP [dm3] 3L_13174402_SNP [dm6]	C	A	3.246e^-4	0.649	UPSTREAM snky INTERGENIC
3L	13167503	3L_13167503_SNP [dm3] 3L_13174403_SNP [dm6]	T	G	3.246e^-4	0.649	UPSTREAM snky INTERGENIC
3L	13167512	3L_13167512_SNP [dm3] 3L_13174412_SNP [dm6]	T	C	3.246e^-4	0.649	UPSTREAM snky INTERGENIC
3R	14590044	3R_14590044_SNP [dm3] 3R_18764322_SNP [dm6]	T	C	3.248e^-4	0.649	INTRON CG7720
2L	3844988	2L_3844988_SNP [dm3] 2L_3844988_SNP [dm6]	A	T	3.252e^-4	0.649	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18700210	2R_18700210_SNP [dm3] 2R_22812705_SNP [dm6]	C	A	3.254e^-4	0.649	SPLICE_SITE_REGION stl INTRON stl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6900154	3R_6900154_SNP [dm3] 3R_11074432_SNP [dm6]	C	T	3.257e^-4	0.649	INTERGENIC
3R	17069109	3R_17069109_SNP [dm3] 3R_21243387_SNP [dm6]	T	A	3.260e^-4	0.649	INTRON CG5892	TF binding site mE1_TFBS_inv
3R	25139131	3R_25139131_SNP [dm3] 3R_29313409_SNP [dm6]	T	A	3.263e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	12400887	3L_12400887_SNP [dm3] 3L_12407787_SNP [dm6]	A	G	3.270e^-4	0.649	INTRON CG32103	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25846177	3R_25846177_SNP [dm3] 3R_30020455_SNP [dm6]	A	C	3.275e^-4	0.649	INTRON Mgat2
3R	16230820	3R_16230820_SNP [dm3] 3R_20405098_SNP [dm6]	A	C	3.277e^-4	0.649	INTRON Gfrl
3R	6093764	3R_6093764_INS [dm3] 3R_10268042_INS [dm6]	C	CCGCACAC	3.282e^-4	0.649	INTRON CG43143	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2L	5723125	2L_5723125_SNP [dm3] 2L_5723125_SNP [dm6]	A	C	3.285e^-4	0.649	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	14857765	X_14857765_DEL [dm3] X_14963732_DEL [dm6]	CTTAAC	C	3.285e^-4	0.649	INTRON eag
3L	6369156	3L_6369156_SNP [dm3] 3L_6376056_SNP [dm6]	C	T	3.286e^-4	0.649	INTERGENIC
2L	20054379	2L_20054379_SNP [dm3] 2L_20054379_SNP [dm6]	A	G	3.290e^-4	0.649	SYNONYMOUS_CODING sNPF
2R	19975211	2R_19975211_SNP [dm3] 2R_24087688_SNP [dm6]	C	T	3.299e^-4	0.649	SYNONYMOUS_CODING snama
3R	24756467	3R_24756467_SNP [dm3] 3R_28930745_SNP [dm6]	C	T	3.302e^-4	0.649	INTRON CG14521
2L	2311659	2L_2311659_SNP [dm3] 2L_2311659_SNP [dm6]	C	G	3.303e^-4	0.649	UPSTREAM eys INTRON CG9967	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24769574	3R_24769574_SNP [dm3] 3R_28943852_SNP [dm6]	T	C	3.307e^-4	0.649	INTRON CG14521
3R	20367474	3R_20367474_SNP [dm3] 3R_24541752_SNP [dm6]	A	C	3.315e^-4	0.649	INTRON CG5789
2L	9125655	2L_9125655_SNP [dm3] 2L_9125655_SNP [dm6]	C	T	3.317e^-4	0.649	UPSTREAM CG32982 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	6050212	2L_6050212_SNP [dm3] 2L_6050212_SNP [dm6]	A	G	3.318e^-4	0.649	NON_SYNONYMOUS_CODING CG12393 UPSTREAM CG9135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo
3R	9773404	3R_9773404_SNP [dm3] 3R_13947682_SNP [dm6]	C	G	3.328e^-4	0.649	UPSTREAM CG31517 INTERGENIC
3L	12347303	3L_12347303_SNP [dm3] 3L_12354203_SNP [dm6]	G	A	3.328e^-4	0.649	INTERGENIC
2L	1743970	2L_1743970_SNP [dm3] 2L_1743970_SNP [dm6]	A	G	3.332e^-4	0.649	INTRON CG17646
2L	10830336	2L_10830336_SNP [dm3] 2L_10830336_SNP [dm6]	A	T	3.333e^-4	0.649	INTRON Nos
3R	24797684	3R_24797684_SNP [dm3] 3R_28971962_SNP [dm6]	A	C	3.334e^-4	0.649	EXON CR45669
3L	8874218	3L_8874218_SNP [dm3] 3L_8881118_SNP [dm6]	G	A	3.335e^-4	0.649	INTRON dally
2R	9738817	2R_9738817_SNP [dm3] 2R_13851312_SNP [dm6]	G	T	3.338e^-4	0.649	SYNONYMOUS_CODING CG30485	TF binding site mE1_TFBS_HSA
2L	5106207	2L_5106207_DEL [dm3] 2L_5106207_DEL [dm6]	TT	T	3.344e^-4	0.649	INTRON Msp300
4	509807	4_509807_SNP [dm3] 4_489181_SNP [dm6]	A	C	3.348e^-4	0.649	UPSTREAM Asator INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	22224424	3R_22224424_SNP [dm3] 3R_26398702_SNP [dm6]	G	A	3.354e^-4	0.649	INTERGENIC
3L	1118866	3L_1118866_SNP [dm3] 3L_1118866_SNP [dm6]	A	T	3.359e^-4	0.649	INTERGENIC	TF binding site mE1_TFBS_cad
3L	10722020	3L_10722020_SNP [dm3] 3L_10728920_SNP [dm6]	G	A	3.360e^-4	0.649	INTERGENIC
3L	433825	3L_433825_SNP [dm3] 3L_433825_SNP [dm6]	T	C	3.362e^-4	0.649	UTR_5_PRIME CG13891 DOWNSTREAM klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14356693	2R_14356693_SNP [dm3] 2R_18469188_SNP [dm6]	G	T	3.362e^-4	0.649	INTRON CG30116	TF binding site mE1_TFBS_chinmo
3L	12690185	3L_12690185_SNP [dm3] 3L_12697085_SNP [dm6]	C	A	3.363e^-4	0.649	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14548683	3L_14548683_SNP [dm3] 3L_14555583_SNP [dm6]	T	C	3.363e^-4	0.649	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2R	13738829	2R_13738829_INS [dm3] 2R_17851324_INS [dm6]	C	CGCATCC	3.364e^-4	0.649	UTR_5_PRIME olf186-F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1271857	3L_1271857_SNP [dm3] 3L_1271857_SNP [dm6]	G	T	3.366e^-4	0.649	INTRON CG9134
3L	16582098	3L_16582098_SNP [dm3] 3L_16588998_SNP [dm6]	T	G	3.368e^-4	0.649	DOWNSTREAM CG32163 INTRON l_3_73Ah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens
3L	1100867	3L_1100867_SNP [dm3] 3L_1100867_SNP [dm6]	G	T	3.371e^-4	0.649	UTR_5_PRIME bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3L	21315499	3L_21315499_SNP [dm3] 3L_21322399_SNP [dm6]	G	A	3.371e^-4	0.649	UTR_5_PRIME Rab26 INTRON Rab26	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	17860144	3R_17860144_SNP [dm3] 3R_22034422_SNP [dm6]	C	T	3.376e^-4	0.649	UTR_5_PRIME pit UPSTREAM Fadd & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_ttk
3R	22035532	3R_22035532_SNP [dm3] 3R_26209810_SNP [dm6]	C	T	3.382e^-4	0.649	INTRON CR44320
3R	23671204	3R_23671204_SNP [dm3] 3R_27845482_SNP [dm6]	C	T	3.384e^-4	0.649	UPSTREAM Or98a DOWNSTREAM Or98P INTRON CG34353
2R	17610556	2R_17610556_SNP [dm3] 2R_21723051_SNP [dm6]	T	C	3.384e^-4	0.649	SYNONYMOUS_CODING LBR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18949475	2R_18949475_SNP [dm3] 2R_23061952_SNP [dm6]	C	T	3.401e^-4	0.652	NON_SYNONYMOUS_CODING l_2_06496 DOWNSTREAM CG44252 & 1 other	TF binding site mE1_TFBS_cad
3R	14094780	3R_14094780_SNP [dm3] 3R_18269058_SNP [dm6]	G	A	3.408e^-4	0.652	INTRON CG18599	TF binding site mE1_TFBS_inv
2R	6293479	2R_6293479_SNP [dm3] 2R_10405974_SNP [dm6]	G	A	3.421e^-4	0.653	INTRON CG42732
3R	18867708	3R_18867708_SNP [dm3] 3R_23041986_SNP [dm6]	T	G	3.431e^-4	0.653	UPSTREAM CG13838 DOWNSTREAM CR44226 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	4309393	X_4309393_DEL [dm3] X_4415360_DEL [dm6]	AATACCTATATCTTTTGCTG...	A	3.431e^-4	0.653	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	18985167	3R_18985167_SNP [dm3] 3R_23159445_SNP [dm6]	T	A	3.431e^-4	0.653	UPSTREAM VhaAC39-2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10830366	2L_10830366_SNP [dm3] 2L_10830366_SNP [dm6]	C	T	3.431e^-4	0.653	INTRON Nos
2R	16793789	2R_16793789_SNP [dm3] 2R_20906284_SNP [dm6]	A	T	3.434e^-4	0.653	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_zfh1
X	11439812	X_11439812_SNP [dm3] X_11545779_SNP [dm6]	G	A	3.443e^-4	0.654	INTRON Drak
3L	5775771	3L_5775771_SNP [dm3] 3L_5782671_SNP [dm6]	C	G	3.453e^-4	0.655	NON_SYNONYMOUS_CODING PGRP-LD SPLICE_SITE_REGION PGRP-LD & 1 other UTR_3_PRIME Pmi DOWNSTREAM Cralbp	TF binding site mE1_TFBS_cad
3R	9648750	3R_9648750_SNP [dm3] 3R_13823028_SNP [dm6]	T	C	3.461e^-4	0.655	INTERGENIC
3L	1264566	3L_1264566_SNP [dm3] 3L_1264566_SNP [dm6]	C	A	3.464e^-4	0.655	INTRON CG9134
3L	12389580	3L_12389580_SNP [dm3] 3L_12396480_SNP [dm6]	C	T	3.466e^-4	0.655	SPLICE_SITE_REGION Obp69a INTRON CG32104 & 1 other
2R	12305080	2R_12305080_SNP [dm3] 2R_16417575_SNP [dm6]	C	A	3.468e^-4	0.655	NON_SYNONYMOUS_CODING Menl-1 UTR_5_PRIME Menl-2 UPSTREAM Menl-2 INTRON Sema-2b
2R	4104516	2R_4104516_SNP [dm3] 2R_8217011_SNP [dm6]	A	G	3.476e^-4	0.655	NON_SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_cad
2L	9408998	2L_9408998_DEL [dm3] 2L_9408998_DEL [dm6]	AA	A	3.477e^-4	0.655	INTRON Shawl
2R	3475660	2R_3475660_SNP [dm3] 2R_7588155_SNP [dm6]	A	T	3.477e^-4	0.655	UTR_3_PRIME CG1360	TF binding site mE1_TFBS_cad
2L	15442349	2L_15442349_SNP [dm3] 2L_15442349_SNP [dm6]	T	G	3.480e^-4	0.655	DOWNSTREAM CR44862 INTERGENIC	TF binding site mE1_TFBS_cad
3R	17065506	3R_17065506_SNP [dm3] 3R_21239784_SNP [dm6]	C	A	3.482e^-4	0.655	INTERGENIC	regulatory region REDfly_CRMs
3R	19700156	3R_19700156_SNP [dm3] 3R_23874434_SNP [dm6]	T	C	3.483e^-4	0.655	INTRON Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3497434	3L_3497434_SNP [dm3] 3L_3497434_SNP [dm6]	T	G	3.487e^-4	0.655	INTRON CG42324
2L	3470596	2L_3470596_SNP [dm3] 2L_3470596_SNP [dm6]	A	G	3.491e^-4	0.655	NON_SYNONYMOUS_CODING CG31776 UPSTREAM CG3238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

AbdominaPigmentT5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results