DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.953e^-14)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.02639
In_3R_P	0.01057

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2257 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	5.104e^-7	0.612	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	20515299	2R_20515299_SNP [dm3] 2R_24627776_SNP [dm6]	T	C	1.032e^-6	0.612	DOWNSTREAM snoRNA:Me18S-G393 INTRON CG13594
X	21910670	X_21910670_SNP [dm3] X_22508834_SNP [dm6]	G	A	2.493e^-6	0.612	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	2.805e^-6	0.612	UPSTREAM CR45341 INTRON CG17292
3L	896058	3L_896058_SNP [dm3] 3L_896058_SNP [dm6]	G	T	2.984e^-6	0.612	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
2R	5085833	2R_5085833_SNP [dm3] 2R_9198328_SNP [dm6]	A	C	4.214e^-6	0.612	INTRON unpg	transposable element FlyBase
2L	8224856	2L_8224856_SNP [dm3] 2L_8224856_SNP [dm6]	C	G	4.682e^-6	0.612	NON_SYNONYMOUS_CODING Pvr
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	5.754e^-6	0.612	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	2276781	3R_2276781_SNP [dm3] 3R_6451059_SNP [dm6]	G	A	5.817e^-6	0.612	UTR_3_PRIME CG9727 DOWNSTREAM CG9727	TF binding site mE1_TFBS_cad
3R	26071350	3R_26071350_SNP [dm3] 3R_30245628_SNP [dm6]	T	G	7.501e^-6	0.612	SYNONYMOUS_CODING CG9733
X	21931684	X_21931684_SNP [dm3] X_22529848_SNP [dm6]	T	G	7.601e^-6	0.612	UPSTREAM S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	5224774	X_5224774_SNP [dm3] X_5330741_SNP [dm6]	G	A	8.187e^-6	0.612	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5224782	X_5224782_SNP [dm3] X_5330749_SNP [dm6]	C	T	8.187e^-6	0.612	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2264922	3R_2264922_SNP [dm3] 3R_6439200_SNP [dm6]	C	T	9.539e^-6	0.612	INTRON gpp
3R	2273966	3R_2273966_SNP [dm3] 3R_6448244_SNP [dm6]	A	T	9.539e^-6	0.612	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_zfh1
3R	2282737	3R_2282737_SNP [dm3] 3R_6457015_SNP [dm6]	G	T	9.539e^-6	0.612	UPSTREAM Zif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2288776	3R_2288776_SNP [dm3] 3R_6463054_SNP [dm6]	C	A	9.539e^-6	0.612	INTERGENIC
2L	20336420	2L_20336420_SNP [dm3] 2L_20336420_SNP [dm6]	G	A	1.073e^-5	0.612	INTRON spir
2R	20518354	2R_20518354_SNP [dm3] 2R_24630831_SNP [dm6]	G	T	1.163e^-5	0.612	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	3650964	3L_3650964_SNP [dm3] 3L_3650964_SNP [dm6]	A	C	1.185e^-5	0.612	INTRON dar1
2L	4568543	2L_4568543_SNP [dm3] 2L_4568543_SNP [dm6]	G	T	1.202e^-5	0.612	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26070670	3R_26070670_SNP [dm3] 3R_30244948_SNP [dm6]	T	A	1.202e^-5	0.612	INTRON CG9733
2L	8224852	2L_8224852_SNP [dm3] 2L_8224852_SNP [dm6]	T	G	1.207e^-5	0.612	SYNONYMOUS_CODING Pvr
3L	6111784	3L_6111784_SNP [dm3] 3L_6118684_SNP [dm6]	A	G	1.222e^-5	0.612	INTRON Ets65A
3R	26045641	3R_26045641_SNP [dm3] 3R_30219919_SNP [dm6]	A	T	1.276e^-5	0.612	INTERGENIC
3R	26045647	3R_26045647_SNP [dm3] 3R_30219925_SNP [dm6]	C	T	1.276e^-5	0.612	INTERGENIC
3R	26045651	3R_26045651_SNP [dm3] 3R_30219929_SNP [dm6]	G	A	1.276e^-5	0.612	INTERGENIC
3R	24990570	3R_24990570_SNP [dm3] 3R_29164848_SNP [dm6]	A	T	1.377e^-5	0.612	UTR_3_PRIME CG11897 UPSTREAM CG11898
2R	20514412	2R_20514412_SNP [dm3] 2R_24626889_SNP [dm6]	A	C	1.395e^-5	0.612	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	1.440e^-5	0.612	INTRON ed
3L	22855146	3L_22855146_SNP [dm3] 3L_22862046_SNP [dm6]	A	G	1.451e^-5	0.612	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	22855291	3L_22855291_SNP [dm3] 3L_22862191_SNP [dm6]	G	C	1.451e^-5	0.612	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	1917898	3R_1917898_SNP [dm3] 3R_6092176_SNP [dm6]	G	T	1.454e^-5	0.612	DOWNSTREAM Gasp INTRON Gasp
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	1.500e^-5	0.612	INTERGENIC
3R	26045650	3R_26045650_SNP [dm3] 3R_30219928_SNP [dm6]	A	G	1.562e^-5	0.612	INTERGENIC
3L	11504300	3L_11504300_SNP [dm3] 3L_11511200_SNP [dm6]	T	C	1.585e^-5	0.612	UPSTREAM CG33272 DOWNSTREAM Sgs7 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	26045653	3R_26045653_SNP [dm3] 3R_30219931_SNP [dm6]	A	T	1.605e^-5	0.612	INTERGENIC
3L	22855081	3L_22855081_SNP [dm3] 3L_22861981_SNP [dm6]	G	T	1.642e^-5	0.612	DOWNSTREAM CG13239 INTERGENIC	TF binding site BDTNP1_TFBS_sna
3R	2195865	3R_2195865_SNP [dm3] 3R_6370143_SNP [dm6]	C	T	1.644e^-5	0.612	NON_SYNONYMOUS_CODING CG10286 DOWNSTREAM CG1041	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	2210505	3R_2210505_SNP [dm3] 3R_6384783_SNP [dm6]	C	T	1.644e^-5	0.612	INTRON godzilla
3R	2238897	3R_2238897_SNP [dm3] 3R_6413175_SNP [dm6]	G	A	1.644e^-5	0.612	INTRON gpp
3R	2174189	3R_2174189_SNP [dm3] 3R_6348467_SNP [dm6]	A	G	1.717e^-5	0.612	UPSTREAM Hr83 DOWNSTREAM CG18048 INTERGENIC
3R	2248059	3R_2248059_SNP [dm3] 3R_6422337_SNP [dm6]	G	A	1.717e^-5	0.612	INTRON gpp	TF binding site BDTNP1_TFBS_dl
3R	26070971	3R_26070971_DEL [dm3] 3R_30245249_DEL [dm6]	AGAGATT	G	1.734e^-5	0.612	INTRON CG9733
X	6331536	X_6331536_SNP [dm3] X_6437503_SNP [dm6]	A	G	1.756e^-5	0.612	INTRON CG42340
2L	13314061	2L_13314061_SNP [dm3] 2L_13314061_SNP [dm6]	C	T	1.810e^-5	0.612	INTRON CG43778
3R	2234513	3R_2234513_SNP [dm3] 3R_6408791_SNP [dm6]	C	T	1.836e^-5	0.612	DOWNSTREAM CR44017 INTRON gpp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	105174	3L_105174_SNP [dm3] 3L_105174_SNP [dm6]	C	T	1.847e^-5	0.612	INTERGENIC
3R	2184082	3R_2184082_SNP [dm3] 3R_6358360_SNP [dm6]	G	A	1.898e^-5	0.612	NON_SYNONYMOUS_CODING Pak	TF binding site mE1_TFBS_cad
3L	5847440	3L_5847440_SNP [dm3] 3L_5854340_SNP [dm6]	C	T	1.905e^-5	0.612	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26281962	3R_26281962_SNP [dm3] 3R_30456240_SNP [dm6]	T	G	1.961e^-5	0.612	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3R	3685944	3R_3685944_SNP [dm3] 3R_7860222_SNP [dm6]	A	G	1.961e^-5	0.612	INTRON CG17816
X	15247660	X_15247660_SNP [dm3] X_15353627_SNP [dm6]	A	T	2.021e^-5	0.612	INTRON acj6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	3650942	3L_3650942_SNP [dm3] 3L_3650942_SNP [dm6]	C	G	2.057e^-5	0.612	INTRON dar1
3R	23491102	3R_23491102_SNP [dm3] 3R_27665380_SNP [dm6]	G	T	2.124e^-5	0.612	SPLICE_SITE_REGION unc80 INTRON unc80	TF binding site mE1_TFBS_cad
X	21910588	X_21910588_SNP [dm3] X_22508752_SNP [dm6]	T	C	2.137e^-5	0.612	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	2.185e^-5	0.612	INTRON spir
X	21942729	X_21942729_SNP [dm3] X_22540893_SNP [dm6]	T	C	2.197e^-5	0.612	SPLICE_SITE_REGION CG17600 UPSTREAM CG17598 INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	21910669	X_21910669_SNP [dm3] X_22508833_SNP [dm6]	A	G	2.202e^-5	0.612	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	22861312	3L_22861312_SNP [dm3] 3L_22868212_SNP [dm6]	T	C	2.213e^-5	0.612	UTR_5_PRIME CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	2161052	3R_2161052_SNP [dm3] 3R_6335330_SNP [dm6]	G	A	2.243e^-5	0.612	UPSTREAM Osi19 INTERGENIC
3R	19447315	3R_19447315_SNP [dm3] 3R_23621593_SNP [dm6]	T	A	2.263e^-5	0.612	INTRON CG31145
3L	7221082	3L_7221082_SNP [dm3] 3L_7227982_SNP [dm6]	T	A	2.263e^-5	0.612	INTERGENIC
3L	4881815	3L_4881815_SNP [dm3] 3L_4881815_SNP [dm6]	T	G	2.274e^-5	0.612	INTRON CG17150
3L	11633769	3L_11633769_SNP [dm3] 3L_11640669_SNP [dm6]	C	T	2.281e^-5	0.612	SYNONYMOUS_CODING CG32091
3R	2240193	3R_2240193_SNP [dm3] 3R_6414471_SNP [dm6]	A	T	2.353e^-5	0.612	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	7442907	2R_7442907_SNP [dm3] 2R_11555402_SNP [dm6]	T	C	2.363e^-5	0.612	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15790682	3L_15790682_DEL [dm3] 3L_15797582_DEL [dm6]	TA	T	2.388e^-5	0.612	INTERGENIC
3R	24976270	3R_24976270_SNP [dm3] 3R_29150548_SNP [dm6]	C	A	2.396e^-5	0.612	NON_SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	8433919	2L_8433919_DEL [dm3] 2L_8433919_DEL [dm6]	AGCGATTAT	A	2.419e^-5	0.612	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17797674	2L_17797674_SNP [dm3] 2L_17797674_SNP [dm6]	T	G	2.558e^-5	0.612	SYNONYMOUS_CODING CadN2
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	2.563e^-5	0.612	INTRON spir
3L	7290467	3L_7290467_SNP [dm3] 3L_7297367_SNP [dm6]	A	G	2.590e^-5	0.612	INTRON unc-13-4A
2R	3883625	2R_3883625_SNP [dm3] 2R_7996120_SNP [dm6]	A	C	2.630e^-5	0.612	SYNONYMOUS_CODING Hey	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	2154506	3R_2154506_SNP [dm3] 3R_6328784_SNP [dm6]	C	T	2.658e^-5	0.612	INTERGENIC
3R	2154581	3R_2154581_SNP [dm3] 3R_6328859_SNP [dm6]	G	A	2.669e^-5	0.612	INTERGENIC
3L	12858903	3L_12858903_SNP [dm3] 3L_12865803_SNP [dm6]	A	C	2.732e^-5	0.612	INTERGENIC
3L	12734395	3L_12734395_SNP [dm3] 3L_12741295_SNP [dm6]	A	G	2.812e^-5	0.612	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3R	2222238	3R_2222238_SNP [dm3] 3R_6396516_SNP [dm6]	A	T	2.847e^-5	0.612	INTRON Dmtn
2R	20080559	2R_20080559_SNP [dm3] 2R_24193036_SNP [dm6]	G	A	2.895e^-5	0.612	SYNONYMOUS_CODING ocm
2R	19138965	2R_19138965_SNP [dm3] 2R_23251442_SNP [dm6]	G	T	2.910e^-5	0.612	INTERGENIC
3L	4881780	3L_4881780_SNP [dm3] 3L_4881780_SNP [dm6]	C	T	2.969e^-5	0.612	INTRON CG17150
3L	4881790	3L_4881790_SNP [dm3] 3L_4881790_SNP [dm6]	T	C	2.969e^-5	0.612	INTRON CG17150
3L	4881799	3L_4881799_SNP [dm3] 3L_4881799_SNP [dm6]	G	A	2.969e^-5	0.612	INTRON CG17150
X	11096273	X_11096273_SNP [dm3] X_11202240_SNP [dm6]	A	G	3.012e^-5	0.612	UPSTREAM CG11106 INTERGENIC
3R	11107909	3R_11107909_SNP [dm3] 3R_15282187_SNP [dm6]	T	C	3.080e^-5	0.612	INTRON Tm1	TF binding site mE1_TFBS_Trl
3R	26070926	3R_26070926_SNP [dm3] 3R_30245204_SNP [dm6]	T	G	3.100e^-5	0.612	INTRON CG9733
3R	26070928	3R_26070928_DEL [dm3] 3R_30245206_DEL [dm6]	TTA	T	3.100e^-5	0.612	INTRON CG9733
3R	5055986	3R_5055986_SNP [dm3] 3R_9230264_SNP [dm6]	C	A	3.158e^-5	0.612	INTRON pum EXON CR45196	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	21910584	X_21910584_INS [dm3] X_22508748_INS [dm6]	T	TT	3.159e^-5	0.612	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	3.210e^-5	0.612	INTRON Cip4
2R	10547226	2R_10547226_SNP [dm3] 2R_14659721_SNP [dm6]	A	T	3.335e^-5	0.612	UPSTREAM Adgf-E INTERGENIC	TF binding site mE1_TFBS_cad
3L	5854619	3L_5854619_SNP [dm3] 3L_5861519_SNP [dm6]	A	G	3.341e^-5	0.612	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	5854714	3L_5854714_SNP [dm3] 3L_5861614_SNP [dm6]	T	G	3.341e^-5	0.612	INTERGENIC
3L	5854779	3L_5854779_DEL [dm3] 3L_5861679_DEL [dm6]	TG	T	3.341e^-5	0.612	INTERGENIC
3L	5854794	3L_5854794_SNP [dm3] 3L_5861694_SNP [dm6]	A	G	3.341e^-5	0.612	INTERGENIC
3L	5859607	3L_5859607_SNP [dm3] 3L_5866507_SNP [dm6]	G	C	3.341e^-5	0.612	INTERGENIC	TF binding site mE1_TFBS_cad
2R	5073573	2R_5073573_SNP [dm3] 2R_9186068_SNP [dm6]	G	A	3.377e^-5	0.612	UTR_5_PRIME ltd DOWNSTREAM CG8026 & 1 other INTRON ltd	regulatory region REDfly_CRMs
3L	3650931	3L_3650931_INS [dm3] 3L_3650931_INS [dm6]	T	TAT	3.385e^-5	0.612	INTRON dar1
2R	20586267	2R_20586267_SNP [dm3] 2R_24698744_SNP [dm6]	A	T	3.437e^-5	0.612	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
3L	14419665	3L_14419665_SNP [dm3] 3L_14426565_SNP [dm6]	C	T	3.542e^-5	0.612	INTRON bbg
2L	17807633	2L_17807633_SNP [dm3] 2L_17807633_SNP [dm6]	G	A	3.551e^-5	0.612	INTRON CadN2
3R	2153106	3R_2153106_SNP [dm3] 3R_6327384_SNP [dm6]	G	A	3.557e^-5	0.612	DOWNSTREAM Osi17 INTERGENIC
3L	22860784	3L_22860784_SNP [dm3] 3L_22867684_SNP [dm6]	G	A	3.558e^-5	0.612	SYNONYMOUS_CODING CG11137 DOWNSTREAM Arf79F & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	14793576	X_14793576_SNP [dm3] X_14899543_SNP [dm6]	C	T	3.613e^-5	0.612	INTRON Flo2
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	3.613e^-5	0.612	INTRON fru
3R	20448243	3R_20448243_SNP [dm3] 3R_24622521_SNP [dm6]	T	G	3.636e^-5	0.612	INTRON mld
3R	2226204	3R_2226204_SNP [dm3] 3R_6400482_SNP [dm6]	C	G	3.652e^-5	0.612	INTRON Dmtn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15049542	3R_15049542_SNP [dm3] 3R_19223820_SNP [dm6]	T	A	3.655e^-5	0.612	INTRON vib
2L	8367595	2L_8367595_SNP [dm3] 2L_8367595_SNP [dm6]	G	A	3.800e^-5	0.612	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
3L	5854842	3L_5854842_SNP [dm3] 3L_5861742_SNP [dm6]	A	T	3.809e^-5	0.612	INTERGENIC
2R	20522966	2R_20522966_SNP [dm3] 2R_24635443_SNP [dm6]	A	T	3.813e^-5	0.612	INTRON CG13594
2L	2051124	2L_2051124_SNP [dm3] 2L_2051124_SNP [dm6]	T	G	3.818e^-5	0.612	INTERGENIC
2L	8433904	2L_8433904_SNP [dm3] 2L_8433904_SNP [dm6]	C	T	3.859e^-5	0.612	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20331677	2L_20331677_SNP [dm3] 2L_20331677_SNP [dm6]	A	G	3.962e^-5	0.612	INTRON spir
2R	14722693	2R_14722693_SNP [dm3] 2R_18835188_SNP [dm6]	A	G	3.981e^-5	0.612	UPSTREAM CG15083 & 1 other INTERGENIC
3R	15835448	3R_15835448_SNP [dm3] 3R_20009726_SNP [dm6]	A	C	4.009e^-5	0.612	SYNONYMOUS_CODING MED25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	22858413	3L_22858413_SNP [dm3] 3L_22865313_SNP [dm6]	T	A	4.048e^-5	0.612	UPSTREAM CG33170 DOWNSTREAM CG33169 INTRON CG33170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
3L	11540330	3L_11540330_SNP [dm3] 3L_11547230_SNP [dm6]	T	G	4.062e^-5	0.612	INTRON Mob2
2R	20523596	2R_20523596_SNP [dm3] 2R_24636073_SNP [dm6]	A	C	4.075e^-5	0.612	INTRON CG13594	TF binding site mE1_TFBS_chinmo
2L	8731937	2L_8731937_SNP [dm3] 2L_8731937_SNP [dm6]	A	T	4.106e^-5	0.612	INTRON raw
2R	5087283	2R_5087283_SNP [dm3] 2R_9199778_SNP [dm6]	C	A	4.109e^-5	0.612	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087295	2R_5087295_SNP [dm3] 2R_9199790_SNP [dm6]	T	G	4.109e^-5	0.612	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087311	2R_5087311_SNP [dm3] 2R_9199806_SNP [dm6]	A	G	4.109e^-5	0.612	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5087314	2R_5087314_SNP [dm3] 2R_9199809_SNP [dm6]	G	A	4.109e^-5	0.612	UTR_3_PRIME unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8174752	2L_8174752_INS [dm3] 2L_8174752_INS [dm6]	T	TTTAGAGCAACT...	4.243e^-5	0.617	INTRON Piezo	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	2063820	3R_2063820_SNP [dm3] 3R_6238098_SNP [dm6]	G	A	4.248e^-5	0.617	DOWNSTREAM Osi6 INTERGENIC
3L	17558836	3L_17558836_SNP [dm3] 3L_17565736_SNP [dm6]	G	T	4.273e^-5	0.617	DOWNSTREAM snoRNA:Me28S-A576 INTRON Eip74EF
2L	15759696	2L_15759696_SNP [dm3] 2L_15759696_SNP [dm6]	G	A	4.275e^-5	0.617	SYNONYMOUS_CODING Gli	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13314139	2L_13314139_SNP [dm3] 2L_13314139_SNP [dm6]	A	G	4.465e^-5	0.619	INTRON CG43778
3R	2240192	3R_2240192_SNP [dm3] 3R_6414470_SNP [dm6]	G	T	4.507e^-5	0.619	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11504815	3L_11504815_SNP [dm3] 3L_11511715_SNP [dm6]	C	A	4.551e^-5	0.619	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	904188	3L_904188_SNP [dm3] 3L_904188_SNP [dm6]	T	C	4.557e^-5	0.619	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	5847467	3L_5847467_SNP [dm3] 3L_5854367_SNP [dm6]	G	A	4.587e^-5	0.619	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	17797068	2L_17797068_SNP [dm3] 2L_17797068_SNP [dm6]	T	A	4.634e^-5	0.619	INTRON CadN2
3L	11633775	3L_11633775_SNP [dm3] 3L_11640675_SNP [dm6]	G	T	4.668e^-5	0.619	SYNONYMOUS_CODING CG32091
2L	5114358	2L_5114358_SNP [dm3] 2L_5114358_SNP [dm6]	C	T	4.736e^-5	0.619	INTRON Msp300
2L	4568520	2L_4568520_SNP [dm3] 2L_4568520_SNP [dm6]	T	C	4.755e^-5	0.619	INTRON dp	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	20586215	2R_20586215_SNP [dm3] 2R_24698692_SNP [dm6]	C	T	4.866e^-5	0.619	UTR_3_PRIME Mid1 DOWNSTREAM Mid1
2L	8433905	2L_8433905_DEL [dm3] 2L_8433905_DEL [dm6]	AAATATGCAA	A	4.874e^-5	0.619	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	9236179	2R_9236179_SNP [dm3] 2R_13348674_SNP [dm6]	C	T	4.922e^-5	0.619	INTRON CR44206
X	2566481	X_2566481_DEL [dm3] X_2672448_DEL [dm6]	AACAATCAA	A	4.924e^-5	0.619	INTRON sgg
3R	26074742	3R_26074742_SNP [dm3] 3R_30249020_SNP [dm6]	G	A	4.931e^-5	0.619	UPSTREAM tRNA:CR31383 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	3627644	X_3627644_SNP [dm3] X_3733611_SNP [dm6]	T	C	5.001e^-5	0.619	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2073980	3R_2073980_SNP [dm3] 3R_6248258_SNP [dm6]	A	C	5.013e^-5	0.619	UPSTREAM Osi7 INTERGENIC
X	8804240	X_8804240_SNP [dm3] X_8910207_SNP [dm6]	T	A	5.038e^-5	0.619	INTRON rdgA
3L	17558521	3L_17558521_SNP [dm3] 3L_17565421_SNP [dm6]	G	A	5.072e^-5	0.619	SYNONYMOUS_CODING Eip74EF DOWNSTREAM snoRNA:Me28S-A576	TF binding site mE1_TFBS_HSA
3R	6822982	3R_6822982_SNP [dm3] 3R_10997260_SNP [dm6]	G	C	5.073e^-5	0.619	INTRON CG34114
2L	10175449	2L_10175449_SNP [dm3] 2L_10175449_SNP [dm6]	T	G	5.075e^-5	0.619	INTRON CG44153
3R	15249385	3R_15249385_DEL [dm3] 3R_19423663_DEL [dm6]	AAGAGCTA	A	5.104e^-5	0.619	DOWNSTREAM CG3517 INTRON CG31221
3R	15249409	3R_15249409_SNP [dm3] 3R_19423687_SNP [dm6]	T	C	5.104e^-5	0.619	DOWNSTREAM CG3517 INTRON CG31221
3R	15249422	3R_15249422_SNP [dm3] 3R_19423700_SNP [dm6]	G	A	5.104e^-5	0.619	DOWNSTREAM CG3517 INTRON CG31221
3L	905245	3L_905245_SNP [dm3] 3L_905245_SNP [dm6]	A	T	5.233e^-5	0.619	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3823377	3L_3823377_SNP [dm3] 3L_3823377_SNP [dm6]	T	C	5.233e^-5	0.619	INTRON enc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8731878	2L_8731878_SNP [dm3] 2L_8731878_SNP [dm6]	A	G	5.258e^-5	0.619	INTRON raw
3R	13997830	3R_13997830_INS [dm3] 3R_18172108_INS [dm6]	C	CAGGCCGATCTTCAACGCTT...	5.373e^-5	0.619	UPSTREAM PP2A-B' INTRON PP2A-B'	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	5.401e^-5	0.619	INTERGENIC
3R	2061166	3R_2061166_SNP [dm3] 3R_6235444_SNP [dm6]	A	T	5.416e^-5	0.619	INTRON Osi6
2L	8371537	2L_8371537_SNP [dm3] 2L_8371537_SNP [dm6]	T	A	5.428e^-5	0.619	UPSTREAM CR45341 & 1 other INTRON CG17292
2L	11288236	2L_11288236_DEL [dm3] 2L_11288236_DEL [dm6]	GG	A	5.440e^-5	0.619	INTERGENIC
2L	11288293	2L_11288293_SNP [dm3] 2L_11288293_SNP [dm6]	A	G	5.440e^-5	0.619	INTERGENIC
2L	11288294	2L_11288294_SNP [dm3] 2L_11288294_SNP [dm6]	T	G	5.440e^-5	0.619	INTERGENIC
X	18192793	X_18192793_SNP [dm3] X_18298760_SNP [dm6]	A	G	5.446e^-5	0.619	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4881821	3L_4881821_SNP [dm3] 3L_4881821_SNP [dm6]	G	C	5.458e^-5	0.619	INTRON CG17150
3L	4376886	3L_4376886_SNP [dm3] 3L_4376886_SNP [dm6]	C	A	5.577e^-5	0.629	DOWNSTREAM CR44360 INTRON DopEcR
3R	15249403	3R_15249403_SNP [dm3] 3R_19423681_SNP [dm6]	A	G	5.671e^-5	0.634	DOWNSTREAM CG3517 INTRON CG31221
3L	3650939	3L_3650939_SNP [dm3] 3L_3650939_SNP [dm6]	A	T	5.718e^-5	0.634	INTRON dar1
3L	438457	3L_438457_SNP [dm3] 3L_438457_SNP [dm6]	A	G	5.795e^-5	0.634	UPSTREAM klar INTRON klar
X	9901008	X_9901008_SNP [dm3] X_10006975_SNP [dm6]	G	A	5.888e^-5	0.634	DOWNSTREAM CG32694 INTERGENIC
2L	10149355	2L_10149355_SNP [dm3] 2L_10149355_SNP [dm6]	A	G	5.947e^-5	0.634	INTRON CG44153 & 1 other
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	5.999e^-5	0.634	INTERGENIC
3L	441715	3L_441715_SNP [dm3] 3L_441715_SNP [dm6]	G	A	6.050e^-5	0.634	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Trl
2R	14262132	2R_14262132_SNP [dm3] 2R_18374627_SNP [dm6]	G	T	6.070e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2040580	3R_2040580_SNP [dm3] 3R_6214858_SNP [dm6]	G	A	6.083e^-5	0.634	UPSTREAM Osi3 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	14419687	3L_14419687_SNP [dm3] 3L_14426587_SNP [dm6]	T	C	6.140e^-5	0.634	INTRON bbg
2L	11288289	2L_11288289_SNP [dm3] 2L_11288289_SNP [dm6]	A	C	6.256e^-5	0.634	INTERGENIC
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	6.282e^-5	0.634	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	2566478	X_2566478_SNP [dm3] X_2672445_SNP [dm6]	T	G	6.309e^-5	0.634	INTRON sgg
2L	11288275	2L_11288275_SNP [dm3] 2L_11288275_SNP [dm6]	T	C	6.311e^-5	0.634	INTERGENIC
2L	10147337	2L_10147337_SNP [dm3] 2L_10147337_SNP [dm6]	C	A	6.346e^-5	0.634	INTRON CG44153 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	18188988	X_18188988_SNP [dm3] X_18294955_SNP [dm6]	T	A	6.362e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	8174487	2R_8174487_SNP [dm3] 2R_12286982_SNP [dm6]	G	C	6.427e^-5	0.634	INTRON CG42700
3R	10810457	3R_10810457_SNP [dm3] 3R_14984735_SNP [dm6]	G	C	6.472e^-5	0.634	INTERGENIC
2R	16402076	2R_16402076_SNP [dm3] 2R_20514571_SNP [dm6]	A	G	6.486e^-5	0.634	INTERGENIC
3R	6229779	3R_6229779_SNP [dm3] 3R_10404057_SNP [dm6]	A	G	6.497e^-5	0.634	NON_SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	6.500e^-5	0.634	INTRON fru
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	6.500e^-5	0.634	INTRON fru
2L	4682405	2L_4682405_SNP [dm3] 2L_4682405_SNP [dm6]	A	G	6.558e^-5	0.634	UPSTREAM CG11929 DOWNSTREAM Bsg25A INTERGENIC
3R	1952908	3R_1952908_SNP [dm3] 3R_6127186_SNP [dm6]	G	A	6.583e^-5	0.634	UPSTREAM CR43486 DOWNSTREAM CR43487 INTERGENIC
2R	15208601	2R_15208601_SNP [dm3] 2R_19321096_SNP [dm6]	A	T	6.604e^-5	0.634	INTRON Rgk1
2R	15208602	2R_15208602_SNP [dm3] 2R_19321097_SNP [dm6]	A	C	6.604e^-5	0.634	INTRON Rgk1
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	6.711e^-5	0.634	INTRON CAH2
2L	8389905	2L_8389905_DEL [dm3] 2L_8389905_DEL [dm6]	AGCTCTACT	A	6.771e^-5	0.634	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	11288419	2L_11288419_SNP [dm3] 2L_11288419_SNP [dm6]	A	G	6.800e^-5	0.634	INTERGENIC
2R	8190481	2R_8190481_SNP [dm3] 2R_12302976_SNP [dm6]	C	T	6.801e^-5	0.634	SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
3L	9492423	3L_9492423_SNP [dm3] 3L_9499323_SNP [dm6]	C	A	6.899e^-5	0.634	INTRON path
3L	3786620	3L_3786620_SNP [dm3] 3L_3786620_SNP [dm6]	T	A	6.931e^-5	0.634	INTRON CG32264	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	2062396	3L_2062396_SNP [dm3] 3L_2062396_SNP [dm6]	T	G	6.937e^-5	0.634	INTRON sls
2R	7420355	2R_7420355_DEL [dm3] 2R_11532850_DEL [dm6]	ATCGAGA	A	6.996e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	7.053e^-5	0.634	INTRON fru
3R	14287661	3R_14287661_SNP [dm3] 3R_18461939_SNP [dm6]	A	C	7.066e^-5	0.634	INTRON fru
3L	10287406	3L_10287406_SNP [dm3] 3L_10294306_SNP [dm6]	C	G	7.079e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	903649	3L_903649_SNP [dm3] 3L_903649_SNP [dm6]	T	C	7.082e^-5	0.634	UTR_3_PRIME CG13905	TF binding site BDTNP1_TFBS_twi
3L	905186	3L_905186_SNP [dm3] 3L_905186_SNP [dm6]	T	A	7.082e^-5	0.634	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22820713	3L_22820713_SNP [dm3] 3L_22827613_SNP [dm6]	T	C	7.116e^-5	0.634	INTRON jim
3L	3651014	3L_3651014_SNP [dm3] 3L_3651014_SNP [dm6]	T	C	7.198e^-5	0.634	INTRON dar1
X	21910661	X_21910661_SNP [dm3] X_22508825_SNP [dm6]	T	C	7.199e^-5	0.634	DOWNSTREAM l_1_G0196 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14262204	2R_14262204_SNP [dm3] 2R_18374699_SNP [dm6]	A	G	7.294e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20117717	3R_20117717_SNP [dm3] 3R_24291995_SNP [dm6]	C	G	7.307e^-5	0.634	UTR_3_PRIME CG6364 INTRON CG6364
2L	4167656	2L_4167656_SNP [dm3] 2L_4167656_SNP [dm6]	T	A	7.308e^-5	0.634	INTERGENIC
3L	897171	3L_897171_SNP [dm3] 3L_897171_SNP [dm6]	C	T	7.361e^-5	0.634	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
2L	11288345	2L_11288345_SNP [dm3] 2L_11288345_SNP [dm6]	T	A	7.381e^-5	0.634	INTERGENIC
X	22058728	X_22058728_SNP [dm3] X_22656892_SNP [dm6]	A	T	7.454e^-5	0.634	UPSTREAM CR44997 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4903991	3R_4903991_SNP [dm3] 3R_9078269_SNP [dm6]	C	T	7.541e^-5	0.634	INTRON pum
3R	1670315	3R_1670315_SNP [dm3] 3R_5844593_SNP [dm6]	T	A	7.549e^-5	0.634	NON_SYNONYMOUS_CODING CG1213
3R	1696146	3R_1696146_SNP [dm3] 3R_5870424_SNP [dm6]	G	C	7.549e^-5	0.634	INTRON CG34113
3L	3650550	3L_3650550_SNP [dm3] 3L_3650550_SNP [dm6]	T	G	7.570e^-5	0.634	INTRON dar1
3L	3823388	3L_3823388_SNP [dm3] 3L_3823388_SNP [dm6]	T	C	7.584e^-5	0.634	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	17981394	3R_17981394_SNP [dm3] 3R_22155672_SNP [dm6]	T	C	7.608e^-5	0.634	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21931828	X_21931828_SNP [dm3] X_22529992_SNP [dm6]	G	A	7.645e^-5	0.634	UTR_5_PRIME S6kII INTRON CG17600	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	23490827	3R_23490827_SNP [dm3] 3R_27665105_SNP [dm6]	C	A	7.658e^-5	0.634	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
2R	13024786	2R_13024786_SNP [dm3] 2R_17137281_SNP [dm6]	T	C	7.672e^-5	0.634	UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
X	21980761	X_21980761_SNP [dm3] X_22578925_SNP [dm6]	A	T	7.685e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6813324	3R_6813324_SNP [dm3] 3R_10987602_SNP [dm6]	A	G	7.694e^-5	0.634	INTRON CG34114
2R	14272366	2R_14272366_SNP [dm3] 2R_18384861_SNP [dm6]	T	A	7.746e^-5	0.634	UTR_3_PRIME CG15067 & 1 other DOWNSTREAM CG15067 & 1 other
2R	14272373	2R_14272373_SNP [dm3] 2R_18384868_SNP [dm6]	T	A	7.746e^-5	0.634	UTR_3_PRIME CG15067 & 1 other DOWNSTREAM CG15067 & 1 other
3L	8570298	3L_8570298_SNP [dm3] 3L_8577198_SNP [dm6]	A	G	7.775e^-5	0.634	UTR_5_PRIME CG43078
3L	5846589	3L_5846589_SNP [dm3] 3L_5853489_SNP [dm6]	T	A	7.873e^-5	0.634	INTERGENIC
3L	5846745	3L_5846745_SNP [dm3] 3L_5853645_SNP [dm6]	G	T	7.873e^-5	0.634	INTERGENIC
3L	5847291	3L_5847291_SNP [dm3] 3L_5854191_SNP [dm6]	G	T	7.873e^-5	0.634	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	17874126	X_17874126_SNP [dm3] X_17980093_SNP [dm6]	T	C	7.873e^-5	0.634	INTRON Sh
2R	14262217	2R_14262217_SNP [dm3] 2R_18374712_SNP [dm6]	G	T	7.912e^-5	0.634	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10712202	3L_10712202_SNP [dm3] 3L_10719102_SNP [dm6]	A	T	7.943e^-5	0.634	INTERGENIC
3R	25155381	3R_25155381_SNP [dm3] 3R_29329659_SNP [dm6]	A	T	8.123e^-5	0.646	INTERGENIC
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	8.170e^-5	0.647	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	9819355	X_9819355_SNP [dm3] X_9925322_SNP [dm6]	C	A	8.363e^-5	0.648	INTERGENIC
3R	26071981	3R_26071981_SNP [dm3] 3R_30246259_SNP [dm6]	A	C	8.383e^-5	0.648	INTRON CG9733
3L	12734435	3L_12734435_SNP [dm3] 3L_12741335_SNP [dm6]	T	G	8.423e^-5	0.648	UTR_3_PRIME Ptp69D UPSTREAM CG32112
2L	10149363	2L_10149363_SNP [dm3] 2L_10149363_SNP [dm6]	T	A	8.436e^-5	0.648	INTRON CG44153 & 1 other
X	18192544	X_18192544_SNP [dm3] X_18298511_SNP [dm6]	T	C	8.456e^-5	0.648	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	16150252	2R_16150252_SNP [dm3] 2R_20262747_SNP [dm6]	A	T	8.510e^-5	0.648	UTR_5_PRIME PCNA DOWNSTREAM plu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	4187058	2L_4187058_SNP [dm3] 2L_4187058_SNP [dm6]	C	T	8.518e^-5	0.648	SYNONYMOUS_CODING CG31961 DOWNSTREAM CR44057	TF binding site mE1_TFBS_sens
3R	26236589	3R_26236589_SNP [dm3] 3R_30410867_SNP [dm6]	A	C	8.626e^-5	0.648	INTERGENIC
3R	26236749	3R_26236749_SNP [dm3] 3R_30411027_SNP [dm6]	C	A	8.626e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	18459666	X_18459666_SNP [dm3] X_18565633_SNP [dm6]	C	T	8.641e^-5	0.648	UPSTREAM tRNA:CR32546 & 1 other INTRON Bx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	17797240	2L_17797240_SNP [dm3] 2L_17797240_SNP [dm6]	C	A	8.675e^-5	0.648	INTRON CadN2
X	3985722	X_3985722_SNP [dm3] X_4091689_SNP [dm6]	G	A	8.741e^-5	0.648	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
2L	11288248	2L_11288248_SNP [dm3] 2L_11288248_SNP [dm6]	T	C	8.820e^-5	0.648	INTERGENIC
2L	11288249	2L_11288249_SNP [dm3] 2L_11288249_SNP [dm6]	T	A	8.820e^-5	0.648	INTERGENIC
3R	10810613	3R_10810613_SNP [dm3] 3R_14984891_SNP [dm6]	T	A	8.864e^-5	0.648	INTERGENIC
2L	5109712	2L_5109712_SNP [dm3] 2L_5109712_SNP [dm6]	G	T	8.903e^-5	0.648	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	21980775	X_21980775_SNP [dm3] X_22578939_SNP [dm6]	T	A	8.916e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981036	X_21981036_INS [dm3] X_22579200_INS [dm6]	T	TAT	8.916e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7537361	3R_7537361_SNP [dm3] 3R_11711639_SNP [dm6]	G	A	8.919e^-5	0.648	UPSTREAM CG14720 INTERGENIC	TF binding site mE1_TFBS_cad
2L	13258341	2L_13258341_SNP [dm3] 2L_13258341_SNP [dm6]	C	A	9.116e^-5	0.648	UTR_3_PRIME CG31851 DOWNSTREAM CG31728 & 2 others
3R	24329223	3R_24329223_SNP [dm3] 3R_28503501_SNP [dm6]	G	T	9.118e^-5	0.648	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	24329225	3R_24329225_SNP [dm3] 3R_28503503_SNP [dm6]	A	G	9.118e^-5	0.648	SPLICE_SITE_REGION Dhc98D INTRON Dhc98D	TF binding site mE1_TFBS_cad
2L	4073262	2L_4073262_SNP [dm3] 2L_4073262_SNP [dm6]	G	T	9.169e^-5	0.648	INTRON ed
3L	10530386	3L_10530386_SNP [dm3] 3L_10537286_SNP [dm6]	T	A	9.271e^-5	0.648	INTRON A2bp1
X	20759590	X_20759590_SNP [dm3] X_20888563_SNP [dm6]	G	A	9.301e^-5	0.648	INTRON shakB
3R	4294856	3R_4294856_SNP [dm3] 3R_8469134_SNP [dm6]	A	G	9.324e^-5	0.648	INTRON CG45263	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	15049588	3R_15049588_SNP [dm3] 3R_19223866_SNP [dm6]	G	T	9.435e^-5	0.648	INTRON vib
3R	26070203	3R_26070203_SNP [dm3] 3R_30244481_SNP [dm6]	G	C	9.525e^-5	0.648	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13387436	2R_13387436_SNP [dm3] 2R_17499931_SNP [dm6]	G	T	9.547e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv
3R	8550657	3R_8550657_SNP [dm3] 3R_12724935_SNP [dm6]	G	T	9.564e^-5	0.648	INTERGENIC
3R	18686709	3R_18686709_SNP [dm3] 3R_22860987_SNP [dm6]	G	A	9.611e^-5	0.648	INTERGENIC
X	21952338	X_21952338_SNP [dm3] X_22550502_SNP [dm6]	T	C	9.659e^-5	0.648	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	21881412	X_21881412_SNP [dm3] X_22479576_SNP [dm6]	C	T	9.666e^-5	0.648	INTRON CG12576
3R	9726051	3R_9726051_SNP [dm3] 3R_13900329_SNP [dm6]	C	A	9.750e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16691232	X_16691232_SNP [dm3] X_16797199_SNP [dm6]	A	G	9.840e^-5	0.648	UTR_3_PRIME CG9132 DOWNSTREAM CG9132 & 1 other
2R	18200831	2R_18200831_SNP [dm3] 2R_22313326_SNP [dm6]	T	G	9.849e^-5	0.648	INTRON CR44758
X	17872212	X_17872212_SNP [dm3] X_17978179_SNP [dm6]	A	G	9.881e^-5	0.648	INTRON Sh
3R	11853566	3R_11853566_SNP [dm3] 3R_16027844_SNP [dm6]	T	A	9.891e^-5	0.648	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Kr
3L	16463123	3L_16463123_INS [dm3] 3L_16470023_INS [dm6]	A	ATCTTTA	9.913e^-5	0.648	DOWNSTREAM aos INTRON CG33158
2R	14386637	2R_14386637_SNP [dm3] 2R_18499132_SNP [dm6]	G	A	9.935e^-5	0.648	INTERGENIC
3L	4842231	3L_4842231_SNP [dm3] 3L_4842231_SNP [dm6]	G	A	9.958e^-5	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12850457	3L_12850457_SNP [dm3] 3L_12857357_SNP [dm6]	C	G	9.989e^-5	0.648	UTR_3_PRIME Ent3 & 1 other DOWNSTREAM Ent3	TF binding site mE1_TFBS_kn
X	18187319	X_18187319_SNP [dm3] X_18293286_SNP [dm6]	T	A	9.994e^-5	0.648	DOWNSTREAM CR15061 INTERGENIC
3R	9687975	3R_9687975_SNP [dm3] 3R_13862253_SNP [dm6]	C	A	1.002e^-4	0.648	INTERGENIC
3R	18460867	3R_18460867_SNP [dm3] 3R_22635145_SNP [dm6]	C	T	1.003e^-4	0.648	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	1810919	3L_1810919_SNP [dm3] 3L_1810919_SNP [dm6]	T	C	1.003e^-4	0.648	INTRON GV1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9521871	3L_9521871_SNP [dm3] 3L_9528771_SNP [dm6]	C	T	1.005e^-4	0.648	UPSTREAM Or67a INTERGENIC
3L	9521952	3L_9521952_SNP [dm3] 3L_9528852_SNP [dm6]	G	A	1.005e^-4	0.648	UPSTREAM Or67a INTERGENIC
3R	15049590	3R_15049590_SNP [dm3] 3R_19223868_SNP [dm6]	T	A	1.005e^-4	0.648	INTRON vib
3R	13058505	3R_13058505_SNP [dm3] 3R_17232783_SNP [dm6]	C	T	1.006e^-4	0.648	NON_SYNONYMOUS_CODING beat-IIb
2R	8174489	2R_8174489_SNP [dm3] 2R_12286984_SNP [dm6]	G	T	1.012e^-4	0.648	INTRON CG42700
3L	3650947	3L_3650947_SNP [dm3] 3L_3650947_SNP [dm6]	A	T	1.016e^-4	0.648	INTRON dar1
3R	14287655	3R_14287655_INS [dm3] 3R_18461933_INS [dm6]	A	ATATAG	1.019e^-4	0.648	INTRON fru
3R	23911905	3R_23911905_SNP [dm3] 3R_28086183_SNP [dm6]	C	T	1.020e^-4	0.648	UTR_3_PRIME CG34362 DOWNSTREAM CG34362 INTRON CG34362	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2056599	3R_2056599_SNP [dm3] 3R_6230877_SNP [dm6]	G	A	1.022e^-4	0.648	INTERGENIC
X	11706797	X_11706797_SNP [dm3] X_11812764_SNP [dm6]	C	T	1.023e^-4	0.648	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3R	26281856	3R_26281856_SNP [dm3] 3R_30456134_SNP [dm6]	G	T	1.026e^-4	0.648	UPSTREAM aralar1 DOWNSTREAM CG2224 INTERGENIC
3R	11094926	3R_11094926_SNP [dm3] 3R_15269204_SNP [dm6]	C	A	1.030e^-4	0.648	NON_SYNONYMOUS_CODING Zip88E UPSTREAM CG14864	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	11095846	3R_11095846_SNP [dm3] 3R_15270124_SNP [dm6]	C	G	1.030e^-4	0.648	DOWNSTREAM Cp190 INTRON Zip88E	TF binding site mE1_TFBS_HSA
3R	17399069	3R_17399069_SNP [dm3] 3R_21573347_SNP [dm6]	T	C	1.031e^-4	0.648	UTR_3_PRIME InR	TF binding site mE1_TFBS_cad
2R	8174478	2R_8174478_SNP [dm3] 2R_12286973_SNP [dm6]	A	T	1.039e^-4	0.648	INTRON CG42700
3L	12306884	3L_12306884_SNP [dm3] 3L_12313784_SNP [dm6]	C	T	1.040e^-4	0.648	INTERGENIC
2R	10537633	2R_10537633_SNP [dm3] 2R_14650128_SNP [dm6]	T	A	1.048e^-4	0.648	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7442693	X_7442693_SNP [dm3] X_7548660_SNP [dm6]	A	C	1.050e^-4	0.648	UPSTREAM CG32719 INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	14946210	2R_14946210_SNP [dm3] 2R_19058705_SNP [dm6]	G	A	1.052e^-4	0.648	UPSTREAM CG15109 INTERGENIC
2R	3465546	2R_3465546_SNP [dm3] 2R_7578041_SNP [dm6]	C	T	1.053e^-4	0.648	SYNONYMOUS_CODING Vps13 DOWNSTREAM CR45130
2R	8174467	2R_8174467_SNP [dm3] 2R_12286962_SNP [dm6]	G	T	1.054e^-4	0.648	INTRON CG42700
2L	16722652	2L_16722652_SNP [dm3] 2L_16722652_SNP [dm6]	G	T	1.057e^-4	0.648	DOWNSTREAM VhaSFD & 1 other INTERGENIC
2R	6226803	2R_6226803_SNP [dm3] 2R_10339298_SNP [dm6]	T	C	1.066e^-4	0.648	SPLICE_SITE_REGION CG42732 INTRON CG42732
2L	2693336	2L_2693336_SNP [dm3] 2L_2693336_SNP [dm6]	A	G	1.066e^-4	0.648	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11324566	3R_11324566_SNP [dm3] 3R_15498844_SNP [dm6]	C	A	1.069e^-4	0.648	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5292880	X_5292880_INS [dm3] X_5398847_INS [dm6]	T	TAT	1.072e^-4	0.648	INTRON SK
2R	5086861	2R_5086861_SNP [dm3] 2R_9199356_SNP [dm6]	A	G	1.077e^-4	0.648	INTRON unpg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo
3R	17399650	3R_17399650_SNP [dm3] 3R_21573928_SNP [dm6]	T	C	1.078e^-4	0.648	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7317518	3L_7317518_SNP [dm3] 3L_7324418_SNP [dm6]	T	C	1.079e^-4	0.648	SYNONYMOUS_CODING Rint1
3L	12411295	3L_12411295_SNP [dm3] 3L_12418195_SNP [dm6]	A	C	1.083e^-4	0.648	UPSTREAM ArfGAP1 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	10314647	3R_10314647_SNP [dm3] 3R_14488925_SNP [dm6]	T	G	1.096e^-4	0.653	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	6830575	3R_6830575_DEL [dm3] 3R_11004853_DEL [dm6]	CGC	C	1.105e^-4	0.653	INTRON CG34114
3R	13569252	3R_13569252_SNP [dm3] 3R_17743530_SNP [dm6]	G	A	1.106e^-4	0.653	INTRON TyrRII	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10712198	3L_10712198_SNP [dm3] 3L_10719098_SNP [dm6]	G	A	1.106e^-4	0.653	INTERGENIC
3L	14152555	3L_14152555_SNP [dm3] 3L_14159455_SNP [dm6]	C	T	1.108e^-4	0.653	INTERGENIC	regulatory region REDfly_CRMs
2L	11288243	2L_11288243_SNP [dm3] 2L_11288243_SNP [dm6]	G	T	1.115e^-4	0.653	INTERGENIC
2R	20580301	2R_20580301_SNP [dm3] 2R_24692778_SNP [dm6]	G	A	1.117e^-4	0.653	SYNONYMOUS_CODING ST6Gal	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10282451	3L_10282451_SNP [dm3] 3L_10289351_SNP [dm6]	T	C	1.121e^-4	0.653	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	8174465	2R_8174465_SNP [dm3] 2R_12286960_SNP [dm6]	G	T	1.123e^-4	0.653	INTRON CG42700
X	18183006	X_18183006_SNP [dm3] X_18288973_SNP [dm6]	C	A	1.133e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8870973	2R_8870973_SNP [dm3] 2R_12983468_SNP [dm6]	T	C	1.133e^-4	0.655	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3823392	3L_3823392_SNP [dm3] 3L_3823392_SNP [dm6]	G	C	1.145e^-4	0.66	INTRON enc	insulator Insulator_Class_II.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18103113	3L_18103113_SNP [dm3] 3L_18110013_SNP [dm6]	G	A	1.156e^-4	0.662	SYNONYMOUS_CODING mus304 UPSTREAM CG5147	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4304120	3R_4304120_SNP [dm3] 3R_8478398_SNP [dm6]	G	T	1.169e^-4	0.662	UPSTREAM CG45263 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_D
2R	8174472	2R_8174472_SNP [dm3] 2R_12286967_SNP [dm6]	T	A	1.170e^-4	0.662	INTRON CG42700
2R	8174473	2R_8174473_SNP [dm3] 2R_12286968_SNP [dm6]	A	G	1.170e^-4	0.662	INTRON CG42700
3L	8115095	3L_8115095_SNP [dm3] 3L_8121995_SNP [dm6]	T	A	1.172e^-4	0.662	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM msk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	11295413	2L_11295413_SNP [dm3] 2L_11295413_SNP [dm6]	C	A	1.174e^-4	0.662	INTERGENIC
X	9901366	X_9901366_SNP [dm3] X_10007333_SNP [dm6]	C	T	1.179e^-4	0.662	DOWNSTREAM CG32694 INTERGENIC
X	9901037	X_9901037_SNP [dm3] X_10007004_SNP [dm6]	T	C	1.180e^-4	0.662	DOWNSTREAM CG32694 INTERGENIC
2R	5982556	2R_5982556_SNP [dm3] 2R_10095051_SNP [dm6]	T	A	1.184e^-4	0.662	SPLICE_SITE_REGION CG2269 SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad
3R	10637009	3R_10637009_SNP [dm3] 3R_14811287_SNP [dm6]	G	A	1.185e^-4	0.662	INTRON btsz	TF binding site mE1_TFBS_inv
3R	11082006	3R_11082006_SNP [dm3] 3R_15256284_SNP [dm6]	G	A	1.193e^-4	0.663	UTR_3_PRIME CG42404
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	1.197e^-4	0.663	INTRON spir
3R	24976325	3R_24976325_SNP [dm3] 3R_29150603_SNP [dm6]	G	A	1.198e^-4	0.663	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	17797212	2L_17797212_SNP [dm3] 2L_17797212_SNP [dm6]	T	A	1.215e^-4	0.668	INTRON CadN2
3L	19283880	3L_19283880_SNP [dm3] 3L_19290780_SNP [dm6]	T	C	1.218e^-4	0.668	INTRON Gbs-76A
3R	15049748	3R_15049748_SNP [dm3] 3R_19224026_SNP [dm6]	T	C	1.218e^-4	0.668	INTRON vib
2R	18613301	2R_18613301_SNP [dm3] 2R_22725796_SNP [dm6]	G	A	1.243e^-4	0.672	INTRON jbug
2R	13024981	2R_13024981_DEL [dm3] 2R_17137476_DEL [dm6]	TT	C	1.250e^-4	0.672	DOWNSTREAM Gbp INTRON CG11395
3R	13552091	3R_13552091_SNP [dm3] 3R_17726369_SNP [dm6]	C	T	1.250e^-4	0.672	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
X	8375340	X_8375340_SNP [dm3] X_8481307_SNP [dm6]	C	T	1.269e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2R	8190495	2R_8190495_SNP [dm3] 2R_12302990_SNP [dm6]	C	G	1.274e^-4	0.672	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
X	15538435	X_15538435_SNP [dm3] X_15644402_SNP [dm6]	G	A	1.276e^-4	0.672	NON_SYNONYMOUS_CODING CG8117	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	3974824	3R_3974824_SNP [dm3] 3R_8149102_SNP [dm6]	C	T	1.283e^-4	0.672	INTRON grn
2R	16646393	2R_16646393_DEL [dm3] 2R_20758888_DEL [dm6]	GGTGCTTA	G	1.289e^-4	0.672	INTERGENIC
X	11706021	X_11706021_SNP [dm3] X_11811988_SNP [dm6]	G	A	1.290e^-4	0.672	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	20517694	2R_20517694_SNP [dm3] 2R_24630171_SNP [dm6]	G	T	1.293e^-4	0.672	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	9791235	3L_9791235_SNP [dm3] 3L_9798135_SNP [dm6]	A	T	1.297e^-4	0.672	UPSTREAM Ilp1 & 2 others INTERGENIC
3L	11421422	3L_11421422_SNP [dm3] 3L_11428322_SNP [dm6]	T	A	1.298e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	5616798	3L_5616798_SNP [dm3] 3L_5623698_SNP [dm6]	A	G	1.303e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5417071	3L_5417071_SNP [dm3] 3L_5423971_SNP [dm6]	A	G	1.317e^-4	0.672	UPSTREAM CG34391 INTERGENIC
2R	20514402	2R_20514402_SNP [dm3] 2R_24626879_SNP [dm6]	C	A	1.318e^-4	0.672	INTRON CG13594	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	4829610	2L_4829610_SNP [dm3] 2L_4829610_SNP [dm6]	T	C	1.321e^-4	0.672	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	6275703	X_6275703_SNP [dm3] X_6381670_SNP [dm6]	T	C	1.334e^-4	0.672	INTERGENIC
2L	17798529	2L_17798529_SNP [dm3] 2L_17798529_SNP [dm6]	G	A	1.336e^-4	0.672	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	17798535	2L_17798535_SNP [dm3] 2L_17798535_SNP [dm6]	T	C	1.336e^-4	0.672	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
3L	14152548	3L_14152548_SNP [dm3] 3L_14159448_SNP [dm6]	C	T	1.336e^-4	0.672	INTERGENIC	regulatory region REDfly_CRMs
3L	3650978	3L_3650978_SNP [dm3] 3L_3650978_SNP [dm6]	C	A	1.339e^-4	0.672	INTRON dar1
3L	3650997	3L_3650997_SNP [dm3] 3L_3650997_SNP [dm6]	C	T	1.339e^-4	0.672	INTRON dar1
3L	11420540	3L_11420540_SNP [dm3] 3L_11427440_SNP [dm6]	T	G	1.341e^-4	0.672	INTERGENIC
2L	1820337	2L_1820337_SNP [dm3] 2L_1820337_SNP [dm6]	A	G	1.357e^-4	0.672	DOWNSTREAM CG31933 INTERGENIC
2R	20478934	2R_20478934_SNP [dm3] 2R_24591411_SNP [dm6]	G	A	1.358e^-4	0.672	INTRON pio	TF binding site BDTNP1_TFBS_prd
3L	5846122	3L_5846122_SNP [dm3] 3L_5853022_SNP [dm6]	C	T	1.366e^-4	0.672	INTERGENIC
3L	10712189	3L_10712189_DEL [dm3] 3L_10719089_DEL [dm6]	AT	G	1.367e^-4	0.672	INTERGENIC
3R	7524523	3R_7524523_SNP [dm3] 3R_11698801_SNP [dm6]	T	G	1.374e^-4	0.672	DOWNSTREAM CG14717 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1
2R	9373774	2R_9373774_SNP [dm3] 2R_13486269_SNP [dm6]	C	G	1.385e^-4	0.672	SYNONYMOUS_CODING cid UPSTREAM cbc DOWNSTREAM bbc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	2693331	2L_2693331_SNP [dm3] 2L_2693331_SNP [dm6]	A	G	1.386e^-4	0.672	INTRON CG31690	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26462442	3R_26462442_SNP [dm3] 3R_30636720_SNP [dm6]	C	T	1.393e^-4	0.672	INTERGENIC
2R	9107654	2R_9107654_SNP [dm3] 2R_13220149_SNP [dm6]	G	C	1.393e^-4	0.672	NON_SYNONYMOUS_CODING CG4646 UPSTREAM CG4630 & 1 other DOWNSTREAM Fsn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	1719197	3R_1719197_DEL [dm3] 3R_5893475_DEL [dm6]	AA	A	1.396e^-4	0.672	INTRON CG34113
3R	1687338	3R_1687338_SNP [dm3] 3R_5861616_SNP [dm6]	C	A	1.398e^-4	0.672	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3875217	X_3875217_SNP [dm3] X_3981184_SNP [dm6]	G	C	1.399e^-4	0.672	INTERGENIC
3R	6877633	3R_6877633_SNP [dm3] 3R_11051911_SNP [dm6]	C	T	1.421e^-4	0.672	INTERGENIC
3R	17689923	3R_17689923_SNP [dm3] 3R_21864201_SNP [dm6]	G	A	1.428e^-4	0.672	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1687345	3R_1687345_SNP [dm3] 3R_5861623_SNP [dm6]	G	A	1.431e^-4	0.672	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2427422	2L_2427422_DEL [dm3] 2L_2427422_DEL [dm6]	TAGTATCAAGGCCTAAATAA...	T	1.433e^-4	0.672	UPSTREAM dpp EXON CR44912
X	8375317	X_8375317_SNP [dm3] X_8481284_SNP [dm6]	A	G	1.440e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375321	X_8375321_SNP [dm3] X_8481288_SNP [dm6]	T	C	1.440e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	6219429	3R_6219429_SNP [dm3] 3R_10393707_SNP [dm6]	C	T	1.441e^-4	0.672	INTRON cwo
2L	11917403	2L_11917403_SNP [dm3] 2L_11917403_SNP [dm6]	C	T	1.464e^-4	0.672	INTRON Pde1c
3R	1905447	3R_1905447_SNP [dm3] 3R_6079725_SNP [dm6]	C	G	1.464e^-4	0.672	INTERGENIC
X	8375339	X_8375339_SNP [dm3] X_8481306_SNP [dm6]	A	C	1.464e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	15249414	3R_15249414_SNP [dm3] 3R_19423692_SNP [dm6]	T	G	1.465e^-4	0.672	DOWNSTREAM CG3517 INTRON CG31221
2R	13025055	2R_13025055_SNP [dm3] 2R_17137550_SNP [dm6]	T	A	1.470e^-4	0.672	NON_SYNONYMOUS_CODING CG11395 DOWNSTREAM Gbp
3L	16741117	3L_16741117_SNP [dm3] 3L_16748017_SNP [dm6]	T	C	1.471e^-4	0.672	INTERGENIC
X	8375349	X_8375349_SNP [dm3] X_8481316_SNP [dm6]	A	T	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375351	X_8375351_SNP [dm3] X_8481318_SNP [dm6]	A	T	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375352	X_8375352_SNP [dm3] X_8481319_SNP [dm6]	A	T	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375354	X_8375354_SNP [dm3] X_8481321_SNP [dm6]	A	C	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375355	X_8375355_SNP [dm3] X_8481322_SNP [dm6]	C	T	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375360	X_8375360_DEL [dm3] X_8481327_DEL [dm6]	CAATA	C	1.477e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	13401500	3L_13401500_SNP [dm3] 3L_13408400_SNP [dm6]	C	T	1.478e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	5980141	2R_5980141_SNP [dm3] 2R_10092636_SNP [dm6]	G	T	1.479e^-4	0.672	INTRON CG2269
2R	19646653	2R_19646653_SNP [dm3] 2R_23759130_SNP [dm6]	G	T	1.486e^-4	0.672	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	25337331	3R_25337331_SNP [dm3] 3R_29511609_SNP [dm6]	G	C	1.486e^-4	0.672	INTERGENIC
3R	20448290	3R_20448290_SNP [dm3] 3R_24622568_SNP [dm6]	G	C	1.491e^-4	0.672	INTRON mld
2R	17326257	2R_17326257_SNP [dm3] 2R_21438752_SNP [dm6]	T	C	1.491e^-4	0.672	INTRON Sdc
2R	20514849	2R_20514849_SNP [dm3] 2R_24627326_SNP [dm6]	G	A	1.500e^-4	0.672	INTRON CG13594	TF binding site BDTNP1_TFBS_sna
2R	13024974	2R_13024974_SNP [dm3] 2R_17137469_SNP [dm6]	C	T	1.507e^-4	0.672	DOWNSTREAM Gbp INTRON CG11395
2R	13024976	2R_13024976_SNP [dm3] 2R_17137471_SNP [dm6]	A	C	1.507e^-4	0.672	DOWNSTREAM Gbp INTRON CG11395
2R	6555381	2R_6555381_SNP [dm3] 2R_10667876_SNP [dm6]	C	T	1.511e^-4	0.672	INTERGENIC
3L	10712258	3L_10712258_SNP [dm3] 3L_10719158_SNP [dm6]	T	C	1.518e^-4	0.672	INTERGENIC
3L	17549404	3L_17549404_SNP [dm3] 3L_17556304_SNP [dm6]	C	T	1.522e^-4	0.672	START_GAINED CycT UTR_5_PRIME CycT UPSTREAM CycT INTRON CycT	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	5114360	2L_5114360_SNP [dm3] 2L_5114360_SNP [dm6]	A	G	1.524e^-4	0.672	INTRON Msp300
3R	19173800	3R_19173800_SNP [dm3] 3R_23348078_SNP [dm6]	T	C	1.526e^-4	0.672	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	14762161	2R_14762161_SNP [dm3] 2R_18874656_SNP [dm6]	T	A	1.527e^-4	0.672	INTERGENIC
3R	2159046	3R_2159046_SNP [dm3] 3R_6333324_SNP [dm6]	A	C	1.529e^-4	0.672	INTERGENIC
3R	26070190	3R_26070190_SNP [dm3] 3R_30244468_SNP [dm6]	G	A	1.538e^-4	0.672	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6223922	3R_6223922_SNP [dm3] 3R_10398200_SNP [dm6]	T	C	1.545e^-4	0.672	NON_SYNONYMOUS_CODING cwo	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14287672	3R_14287672_SNP [dm3] 3R_18461950_SNP [dm6]	C	T	1.550e^-4	0.672	INTRON fru
3R	14287685	3R_14287685_SNP [dm3] 3R_18461963_SNP [dm6]	G	C	1.550e^-4	0.672	INTRON fru
2L	10148935	2L_10148935_SNP [dm3] 2L_10148935_SNP [dm6]	G	C	1.565e^-4	0.672	INTRON CG44153 & 1 other
3L	9647162	3L_9647162_SNP [dm3] 3L_9654062_SNP [dm6]	A	G	1.566e^-4	0.672	INTRON fry & 1 other
3R	5307674	3R_5307674_SNP [dm3] 3R_9481952_SNP [dm6]	C	G	1.569e^-4	0.672	INTRON CG16779
3R	2088576	3R_2088576_SNP [dm3] 3R_6262854_SNP [dm6]	A	T	1.571e^-4	0.672	DOWNSTREAM Osi9 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6460935	2R_6460935_SNP [dm3] 2R_10573430_SNP [dm6]	A	T	1.575e^-4	0.672	INTRON psq
3R	4297207	3R_4297207_SNP [dm3] 3R_8471485_SNP [dm6]	T	A	1.578e^-4	0.672	INTRON CG45263
3L	3650934	3L_3650934_SNP [dm3] 3L_3650934_SNP [dm6]	C	A	1.579e^-4	0.672	INTRON dar1
2L	8433931	2L_8433931_INS [dm3] 2L_8433931_INS [dm6]	T	TG	1.580e^-4	0.672	UPSTREAM grk DOWNSTREAM D12 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13480791	3R_13480791_SNP [dm3] 3R_17655069_SNP [dm6]	G	A	1.582e^-4	0.672	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	13480799	3R_13480799_SNP [dm3] 3R_17655077_SNP [dm6]	C	G	1.582e^-4	0.672	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
3R	15559971	3R_15559971_SNP [dm3] 3R_19734249_SNP [dm6]	T	C	1.592e^-4	0.672	INTRON GluClalpha
2R	8297766	2R_8297766_SNP [dm3] 2R_12410261_SNP [dm6]	G	T	1.595e^-4	0.672	NON_SYNONYMOUS_CODING CG33626 UPSTREAM CG33627 DOWNSTREAM CG30050
3L	19968271	3L_19968271_SNP [dm3] 3L_19975171_SNP [dm6]	T	C	1.599e^-4	0.672	INTRON Ac76E
2L	11292363	2L_11292363_SNP [dm3] 2L_11292363_SNP [dm6]	G	A	1.601e^-4	0.672	INTERGENIC
3L	16677054	3L_16677054_SNP [dm3] 3L_16683954_SNP [dm6]	T	C	1.604e^-4	0.672	INTRON Lasp & 1 other
3L	13573518	3L_13573518_SNP [dm3] 3L_13580418_SNP [dm6]	A	T	1.605e^-4	0.672	INTRON bru-3
3R	17399686	3R_17399686_SNP [dm3] 3R_21573964_SNP [dm6]	G	A	1.611e^-4	0.672	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	20517700	2R_20517700_SNP [dm3] 2R_24630177_SNP [dm6]	C	T	1.618e^-4	0.672	UPSTREAM Cyp9c1 DOWNSTREAM CR43787 INTRON CG13594
3L	16321543	3L_16321543_INS [dm3] 3L_16328443_INS [dm6]	G	GAAAATATTTATTAATATTT...	1.621e^-4	0.672	UPSTREAM CG13058 & 1 other INTERGENIC
2R	13025025	2R_13025025_SNP [dm3] 2R_17137520_SNP [dm6]	T	G	1.622e^-4	0.672	NON_SYNONYMOUS_CODING CG11395 DOWNSTREAM Gbp
3L	14704427	3L_14704427_SNP [dm3] 3L_14711327_SNP [dm6]	C	T	1.628e^-4	0.672	INTRON ome
3R	1834082	3R_1834082_SNP [dm3] 3R_6008360_SNP [dm6]	G	A	1.633e^-4	0.672	SYNONYMOUS_CODING Rm62 UTR_5_PRIME Rm62 UPSTREAM Rm62 INTRON Rm62	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13480775	3R_13480775_SNP [dm3] 3R_17655053_SNP [dm6]	T	G	1.635e^-4	0.672	INTRON CG14322	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2R	9291633	2R_9291633_SNP [dm3] 2R_13404128_SNP [dm6]	A	T	1.640e^-4	0.672	INTERGENIC
3R	26236645	3R_26236645_SNP [dm3] 3R_30410923_SNP [dm6]	C	G	1.642e^-4	0.672	INTERGENIC
2R	14471647	2R_14471647_SNP [dm3] 2R_18584142_SNP [dm6]	C	T	1.643e^-4	0.672	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	11186139	X_11186139_SNP [dm3] X_11292106_SNP [dm6]	G	A	1.645e^-4	0.672	INTRON CG44422
3L	7221445	3L_7221445_SNP [dm3] 3L_7228345_SNP [dm6]	G	T	1.650e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12734501	3L_12734501_SNP [dm3] 3L_12741401_SNP [dm6]	G	A	1.657e^-4	0.672	UTR_3_PRIME Ptp69D UPSTREAM CG32112
3R	15559970	3R_15559970_SNP [dm3] 3R_19734248_SNP [dm6]	A	T	1.658e^-4	0.672	INTRON GluClalpha
2R	7686621	2R_7686621_SNP [dm3] 2R_11799116_SNP [dm6]	A	G	1.677e^-4	0.672	INTRON ths
3R	17894258	3R_17894258_SNP [dm3] 3R_22068536_SNP [dm6]	A	T	1.677e^-4	0.672	INTRON how
3R	17894397	3R_17894397_SNP [dm3] 3R_22068675_SNP [dm6]	C	A	1.677e^-4	0.672	INTRON how
3R	17896037	3R_17896037_SNP [dm3] 3R_22070315_SNP [dm6]	C	A	1.677e^-4	0.672	INTRON how	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	2566221	X_2566221_SNP [dm3] X_2672188_SNP [dm6]	C	T	1.688e^-4	0.672	INTRON sgg
2L	20317865	2L_20317865_SNP [dm3] 2L_20317865_SNP [dm6]	A	G	1.694e^-4	0.672	UPSTREAM CR43606 INTRON spir
2L	2943250	2L_2943250_SNP [dm3] 2L_2943250_SNP [dm6]	A	G	1.698e^-4	0.672	INTRON lilli
3L	437635	3L_437635_SNP [dm3] 3L_437635_SNP [dm6]	G	T	1.708e^-4	0.672	UTR_5_PRIME klar INTRON klar
X	8375342	X_8375342_SNP [dm3] X_8481309_SNP [dm6]	A	T	1.728e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375345	X_8375345_SNP [dm3] X_8481312_SNP [dm6]	C	T	1.728e^-4	0.672	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	18190377	X_18190377_INS [dm3] X_18296344_INS [dm6]	T	TT	1.728e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25446523	3R_25446523_SNP [dm3] 3R_29620801_SNP [dm6]	C	G	1.729e^-4	0.672	DOWNSTREAM CG1907 INTERGENIC
3R	3622111	3R_3622111_SNP [dm3] 3R_7796389_SNP [dm6]	C	G	1.732e^-4	0.672	NON_SYNONYMOUS_CODING CG2641 DOWNSTREAM CG18744
2L	8185707	2L_8185707_SNP [dm3] 2L_8185707_SNP [dm6]	C	T	1.736e^-4	0.672	INTRON Piezo
2R	16517967	2R_16517967_SNP [dm3] 2R_20630462_SNP [dm6]	G	C	1.740e^-4	0.672	INTRON Rcd6
3L	12842203	3L_12842203_SNP [dm3] 3L_12849103_SNP [dm6]	T	A	1.749e^-4	0.672	SPLICE_SITE_REGION CG10948 INTRON CG10948	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	13024997	2R_13024997_SNP [dm3] 2R_17137492_SNP [dm6]	A	C	1.749e^-4	0.672	NON_SYNONYMOUS_CODING CG11395 SPLICE_SITE_REGION CG11395 DOWNSTREAM Gbp
2R	16404150	2R_16404150_SNP [dm3] 2R_20516645_SNP [dm6]	G	A	1.754e^-4	0.672	INTERGENIC
3R	13552046	3R_13552046_SNP [dm3] 3R_17726324_SNP [dm6]	A	G	1.761e^-4	0.672	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
X	16612508	X_16612508_DEL [dm3] X_16718475_DEL [dm6]	GG	G	1.763e^-4	0.672	INTRON CG34325
X	11706052	X_11706052_SNP [dm3] X_11812019_SNP [dm6]	G	T	1.778e^-4	0.672	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	19173445	3R_19173445_SNP [dm3] 3R_23347723_SNP [dm6]	C	G	1.779e^-4	0.672	UPSTREAM DNApol-epsilon INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13049182	3R_13049182_SNP [dm3] 3R_17223460_SNP [dm6]	A	G	1.785e^-4	0.672	UPSTREAM CG31262 INTERGENIC
3R	13049889	3R_13049889_SNP [dm3] 3R_17224167_SNP [dm6]	G	A	1.785e^-4	0.672	INTERGENIC
3R	13052484	3R_13052484_SNP [dm3] 3R_17226762_SNP [dm6]	A	T	1.785e^-4	0.672	INTERGENIC
3R	13052816	3R_13052816_SNP [dm3] 3R_17227094_SNP [dm6]	T	C	1.785e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12064463	3L_12064463_SNP [dm3] 3L_12071363_SNP [dm6]	A	G	1.786e^-4	0.672	INTRON Sema-5c	TF binding site mE1_TFBS_chinmo
X	7455243	X_7455243_SNP [dm3] X_7561210_SNP [dm6]	A	T	1.789e^-4	0.672	INTERGENIC
X	11707310	X_11707310_SNP [dm3] X_11813277_SNP [dm6]	T	C	1.791e^-4	0.672	INTRON CG1578	TF binding site mE1_TFBS_inv
2L	11917224	2L_11917224_SNP [dm3] 2L_11917224_SNP [dm6]	C	G	1.792e^-4	0.672	INTRON Pde1c
2L	2125229	2L_2125229_SNP [dm3] 2L_2125229_SNP [dm6]	A	G	1.800e^-4	0.672	INTERGENIC
2R	4734505	2R_4734505_SNP [dm3] 2R_8847000_SNP [dm6]	C	T	1.810e^-4	0.672	INTRON sns	TF binding site mE1_TFBS_cad
3R	7515427	3R_7515427_SNP [dm3] 3R_11689705_SNP [dm6]	T	A	1.816e^-4	0.672	DOWNSTREAM CG18765 INTRON CG6908
3R	7515611	3R_7515611_SNP [dm3] 3R_11689889_SNP [dm6]	C	T	1.816e^-4	0.672	SYNONYMOUS_CODING CG6908 DOWNSTREAM CG18765	TF binding site mE1_TFBS_cnc
3R	1687294	3R_1687294_SNP [dm3] 3R_5861572_SNP [dm6]	C	A	1.834e^-4	0.672	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2159047	3R_2159047_SNP [dm3] 3R_6333325_SNP [dm6]	C	A	1.836e^-4	0.672	INTERGENIC
3R	25956376	3R_25956376_SNP [dm3] 3R_30130654_SNP [dm6]	C	T	1.838e^-4	0.672	NON_SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1380712	3L_1380712_SNP [dm3] 3L_1380712_SNP [dm6]	G	A	1.838e^-4	0.672	DOWNSTREAM tRNA:CR32330 & 2 others INTRON Ptp61F & 1 other	TF binding site BDTNP1_TFBS_dl
3L	15634288	3L_15634288_SNP [dm3] 3L_15641188_SNP [dm6]	C	G	1.840e^-4	0.672	INTRON comm3
3L	5692639	3L_5692639_SNP [dm3] 3L_5699539_SNP [dm6]	C	G	1.844e^-4	0.672	INTRON sif	TF binding site mE1_TFBS_chinmo
3R	18529748	3R_18529748_SNP [dm3] 3R_22704026_SNP [dm6]	G	T	1.851e^-4	0.672	SPLICE_SITE_REGION CG6972 DOWNSTREAM CG13842 INTRON CG6972
3R	18529754	3R_18529754_SNP [dm3] 3R_22704032_SNP [dm6]	T	C	1.851e^-4	0.672	DOWNSTREAM CG13842 INTRON CG6972
3R	18529764	3R_18529764_SNP [dm3] 3R_22704042_SNP [dm6]	G	A	1.851e^-4	0.672	DOWNSTREAM CG13842 INTRON CG6972
3R	1322527	3R_1322527_SNP [dm3] 3R_5496805_SNP [dm6]	C	T	1.852e^-4	0.672	INTRON CG31547
3R	26045268	3R_26045268_SNP [dm3] 3R_30219546_SNP [dm6]	T	G	1.852e^-4	0.672	INTERGENIC
3R	18208464	3R_18208464_SNP [dm3] 3R_22382742_SNP [dm6]	T	A	1.854e^-4	0.672	SYNONYMOUS_CODING CG43343 DOWNSTREAM CG43342	TF binding site mE1_TFBS_sens
3R	6231315	3R_6231315_SNP [dm3] 3R_10405593_SNP [dm6]	A	G	1.857e^-4	0.672	SYNONYMOUS_CODING CG6325	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26234558	3R_26234558_SNP [dm3] 3R_30408836_SNP [dm6]	A	G	1.859e^-4	0.672	INTERGENIC
3R	26237203	3R_26237203_SNP [dm3] 3R_30411481_SNP [dm6]	C	T	1.859e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8514390	2R_8514390_SNP [dm3] 2R_12626885_SNP [dm6]	A	T	1.861e^-4	0.672	NON_SYNONYMOUS_CODING CG17760
3R	15049658	3R_15049658_SNP [dm3] 3R_19223936_SNP [dm6]	G	A	1.865e^-4	0.672	INTRON vib
3R	15049700	3R_15049700_SNP [dm3] 3R_19223978_SNP [dm6]	C	G	1.865e^-4	0.672	INTRON vib
3R	15049701	3R_15049701_SNP [dm3] 3R_19223979_SNP [dm6]	G	C	1.865e^-4	0.672	INTRON vib
3R	15049713	3R_15049713_MNP [dm3] 3R_19223991_MNP [dm6]	AACA	GCAC	1.865e^-4	0.672	INTRON vib
3R	15049719	3R_15049719_SNP [dm3] 3R_19223997_SNP [dm6]	A	T	1.865e^-4	0.672	INTRON vib
3R	26058359	3R_26058359_SNP [dm3] 3R_30232637_SNP [dm6]	A	G	1.866e^-4	0.672	INTERGENIC
2L	5261010	2L_5261010_SNP [dm3] 2L_5261010_SNP [dm6]	G	A	1.869e^-4	0.672	INTRON tkv
2R	6460832	2R_6460832_SNP [dm3] 2R_10573327_SNP [dm6]	G	A	1.879e^-4	0.672	INTRON psq
3R	17904057	3R_17904057_SNP [dm3] 3R_22078335_SNP [dm6]	A	G	1.884e^-4	0.672	UTR_3_PRIME how
2L	13967771	2L_13967771_SNP [dm3] 2L_13967771_SNP [dm6]	G	T	1.886e^-4	0.672	SYNONYMOUS_CODING NimB3 UPSTREAM NimB2 DOWNSTREAM NimB4
3R	2142932	3R_2142932_SNP [dm3] 3R_6317210_SNP [dm6]	T	G	1.887e^-4	0.672	INTRON Osi17
X	20439479	X_20439479_SNP [dm3] X_20568452_SNP [dm6]	A	T	1.891e^-4	0.672	INTERGENIC
X	18191666	X_18191666_INS [dm3] X_18297633_INS [dm6]	T	TCCAGCCTCAGT...	1.895e^-4	0.672	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	11445141	2R_11445141_SNP [dm3] 2R_15557636_SNP [dm6]	A	T	1.895e^-4	0.672	UPSTREAM CG12963 INTRON CG12963
3L	10413841	3L_10413841_SNP [dm3] 3L_10420741_SNP [dm6]	A	T	1.897e^-4	0.672	INTERGENIC
3R	6221742	3R_6221742_SNP [dm3] 3R_10396020_SNP [dm6]	T	A	1.900e^-4	0.672	INTRON cwo
3R	15049686	3R_15049686_SNP [dm3] 3R_19223964_SNP [dm6]	T	C	1.901e^-4	0.672	INTRON vib
2L	8732750	2L_8732750_SNP [dm3] 2L_8732750_SNP [dm6]	T	C	1.905e^-4	0.672	INTRON raw
3L	8323379	3L_8323379_SNP [dm3] 3L_8330279_SNP [dm6]	T	A	1.907e^-4	0.672	DOWNSTREAM CG34462 INTERGENIC
2L	12983391	2L_12983391_SNP [dm3] 2L_12983391_SNP [dm6]	T	C	1.921e^-4	0.672	INTERGENIC
2L	20359648	2L_20359648_SNP [dm3] 2L_20359648_SNP [dm6]	G	A	1.922e^-4	0.672	DOWNSTREAM RtGEF INTRON RtGEF
2R	13299206	2R_13299206_SNP [dm3] 2R_17411701_SNP [dm6]	C	A	1.922e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16896688	2L_16896688_SNP [dm3] 2L_16896688_SNP [dm6]	A	C	1.922e^-4	0.672	INTRON tweek
3R	25451604	3R_25451604_SNP [dm3] 3R_29625882_SNP [dm6]	G	A	1.929e^-4	0.672	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	14267563	2R_14267563_SNP [dm3] 2R_18380058_SNP [dm6]	G	C	1.930e^-4	0.672	INTERGENIC
2R	14264426	2R_14264426_SNP [dm3] 2R_18376921_SNP [dm6]	G	A	1.931e^-4	0.672	UPSTREAM CR42736 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17891723	3R_17891723_SNP [dm3] 3R_22066001_SNP [dm6]	T	A	1.941e^-4	0.672	INTRON how
2R	20522369	2R_20522369_SNP [dm3] 2R_24634846_SNP [dm6]	A	G	1.947e^-4	0.672	INTRON CG13594
3L	1548010	3L_1548010_SNP [dm3] 3L_1548010_SNP [dm6]	T	C	1.950e^-4	0.672	UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	22398799	3R_22398799_SNP [dm3] 3R_26573077_SNP [dm6]	A	G	1.951e^-4	0.672	INTRON scrib
2R	9236167	2R_9236167_SNP [dm3] 2R_13348662_SNP [dm6]	C	G	1.952e^-4	0.672	INTRON CR44206
3R	24329202	3R_24329202_SNP [dm3] 3R_28503480_SNP [dm6]	A	G	1.954e^-4	0.672	INTRON Dhc98D	TF binding site mE1_TFBS_cad
2R	14242907	2R_14242907_SNP [dm3] 2R_18355402_SNP [dm6]	T	C	1.956e^-4	0.672	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	14244378	2R_14244378_SNP [dm3] 2R_18356873_SNP [dm6]	G	A	1.956e^-4	0.672	START_GAINED sbb UTR_5_PRIME sbb INTRON sbb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14261212	2R_14261212_SNP [dm3] 2R_18373707_SNP [dm6]	T	C	1.956e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12694516	3L_12694516_SNP [dm3] 3L_12701416_SNP [dm6]	G	A	1.956e^-4	0.672	INTRON mirr	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	11101572	3R_11101572_SNP [dm3] 3R_15275850_SNP [dm6]	A	G	1.956e^-4	0.672	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11101752	3R_11101752_SNP [dm3] 3R_15276030_SNP [dm6]	C	A	1.956e^-4	0.672	NON_SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	11102117	3R_11102117_SNP [dm3] 3R_15276395_SNP [dm6]	C	G	1.956e^-4	0.672	NON_SYNONYMOUS_CODING CG4338 DOWNSTREAM MRG15	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102352	3R_11102352_SNP [dm3] 3R_15276630_SNP [dm6]	G	A	1.956e^-4	0.672	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102400	3R_11102400_SNP [dm3] 3R_15276678_SNP [dm6]	A	G	1.956e^-4	0.672	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11102475	3R_11102475_SNP [dm3] 3R_15276753_SNP [dm6]	G	C	1.956e^-4	0.672	SYNONYMOUS_CODING MRG15 DOWNSTREAM CG4338	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	11107588	3R_11107588_SNP [dm3] 3R_15281866_SNP [dm6]	A	T	1.956e^-4	0.672	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	11107603	3R_11107603_SNP [dm3] 3R_15281881_SNP [dm6]	T	C	1.956e^-4	0.672	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8113257	2L_8113257_SNP [dm3] 2L_8113257_SNP [dm6]	A	C	1.964e^-4	0.672	UTR_3_PRIME Bsg
2L	17797241	2L_17797241_INS [dm3] 2L_17797241_INS [dm6]	A	ACAATCTGTATTCTAG...	1.967e^-4	0.672	INTRON CadN2
3L	10570579	3L_10570579_SNP [dm3] 3L_10577479_SNP [dm6]	C	T	1.972e^-4	0.672	INTRON A2bp1
3R	1673661	3R_1673661_SNP [dm3] 3R_5847939_SNP [dm6]	C	T	1.981e^-4	0.672	SYNONYMOUS_CODING CG14676	TF binding site mE1_TFBS_cad
2R	6460808	2R_6460808_SNP [dm3] 2R_10573303_SNP [dm6]	C	A	1.994e^-4	0.672	INTRON psq
3L	8576893	3L_8576893_SNP [dm3] 3L_8583793_SNP [dm6]	A	C	2.003e^-4	0.672	INTRON CG43078
2R	20527337	2R_20527337_SNP [dm3] 2R_24639814_SNP [dm6]	C	G	2.005e^-4	0.672	NON_SYNONYMOUS_CODING CG3640 DOWNSTREAM CG4781	TF binding site mE1_TFBS_chinmo
2R	20527338	2R_20527338_SNP [dm3] 2R_24639815_SNP [dm6]	G	T	2.005e^-4	0.672	SYNONYMOUS_CODING CG3640 DOWNSTREAM CG4781	TF binding site mE1_TFBS_chinmo
3R	3751465	3R_3751465_DEL [dm3] 3R_7925743_DEL [dm6]	GAGGT	G	2.006e^-4	0.672	INTRON dsx
3R	17723438	3R_17723438_SNP [dm3] 3R_21897716_SNP [dm6]	T	A	2.007e^-4	0.672	INTRON CG6678
2L	10867312	2L_10867312_SNP [dm3] 2L_10867312_SNP [dm6]	C	G	2.008e^-4	0.672	INTERGENIC
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	2.012e^-4	0.672	UPSTREAM TrpA1 INTRON TrpA1
2R	14272635	2R_14272635_SNP [dm3] 2R_18385130_SNP [dm6]	G	A	2.014e^-4	0.672	SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	24329191	3R_24329191_SNP [dm3] 3R_28503469_SNP [dm6]	A	G	2.015e^-4	0.672	INTRON Dhc98D	TF binding site mE1_TFBS_cad
3R	24207403	3R_24207403_SNP [dm3] 3R_28381681_SNP [dm6]	T	C	2.017e^-4	0.672	INTERGENIC
3R	1748729	3R_1748729_SNP [dm3] 3R_5923007_SNP [dm6]	G	T	2.021e^-4	0.672	INTRON CG34113
X	11743848	X_11743848_SNP [dm3] X_11849815_SNP [dm6]	T	C	2.024e^-4	0.672	EXON CR45619
X	9738470	X_9738470_SNP [dm3] X_9844437_SNP [dm6]	C	G	2.027e^-4	0.672	INTRON CG32698
3R	17555389	3R_17555389_SNP [dm3] 3R_21729667_SNP [dm6]	T	C	2.032e^-4	0.672	EXON CR43096
X	16077609	X_16077609_SNP [dm3] X_16183576_SNP [dm6]	T	C	2.041e^-4	0.672	INTERGENIC
3R	15354870	3R_15354870_SNP [dm3] 3R_19529148_SNP [dm6]	A	G	2.049e^-4	0.672	INTRON Dys	insulator Insulator_Class_II.mE01
3R	19833103	3R_19833103_SNP [dm3] 3R_24007381_SNP [dm6]	C	T	2.050e^-4	0.672	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7520556	3R_7520556_SNP [dm3] 3R_11694834_SNP [dm6]	G	T	2.054e^-4	0.672	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520558	3R_7520558_SNP [dm3] 3R_11694836_SNP [dm6]	A	G	2.054e^-4	0.672	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	7520595	3R_7520595_SNP [dm3] 3R_11694873_SNP [dm6]	T	A	2.054e^-4	0.672	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7236676	2L_7236676_SNP [dm3] 2L_7236676_SNP [dm6]	A	C	2.057e^-4	0.672	INTRON Ndae1
2R	8174368	2R_8174368_SNP [dm3] 2R_12286863_SNP [dm6]	C	A	2.060e^-4	0.672	INTRON CG42700
3R	15049652	3R_15049652_SNP [dm3] 3R_19223930_SNP [dm6]	A	G	2.062e^-4	0.672	INTRON vib
3R	15049743	3R_15049743_SNP [dm3] 3R_19224021_SNP [dm6]	C	G	2.062e^-4	0.672	INTRON vib
3R	25460307	3R_25460307_SNP [dm3] 3R_29634585_SNP [dm6]	T	C	2.074e^-4	0.672	INTRON Dop1R2
X	6797525	X_6797525_SNP [dm3] X_6903492_SNP [dm6]	C	A	2.075e^-4	0.672	INTERGENIC
3R	17399620	3R_17399620_SNP [dm3] 3R_21573898_SNP [dm6]	C	T	2.075e^-4	0.672	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	16321522	3L_16321522_SNP [dm3] 3L_16328422_SNP [dm6]	T	A	2.089e^-4	0.672	UPSTREAM CG13058 & 1 other INTERGENIC
3R	15051899	3R_15051899_SNP [dm3] 3R_19226177_SNP [dm6]	T	G	2.091e^-4	0.672	DOWNSTREAM CG11703 INTRON vib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	16321551	3L_16321551_INS [dm3] 3L_16328451_INS [dm6]	T	TAA	2.092e^-4	0.672	UPSTREAM CG13058 & 1 other INTERGENIC
2L	4338271	2L_4338271_SNP [dm3] 2L_4338271_SNP [dm6]	A	G	2.094e^-4	0.672	UPSTREAM Atet INTRON Atet	TF binding site mE1_TFBS_HSA
X	6797380	X_6797380_SNP [dm3] X_6903347_SNP [dm6]	G	A	2.097e^-4	0.672	INTERGENIC
3R	11107597	3R_11107597_SNP [dm3] 3R_15281875_SNP [dm6]	A	G	2.105e^-4	0.672	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	8291149	2R_8291149_SNP [dm3] 2R_12403644_SNP [dm6]	A	T	2.107e^-4	0.672	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3L	7094840	3L_7094840_SNP [dm3] 3L_7101740_SNP [dm6]	G	A	2.117e^-4	0.672	INTRON form3
3R	11107595	3R_11107595_SNP [dm3] 3R_15281873_SNP [dm6]	G	T	2.117e^-4	0.672	INTRON Tm1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14705561	3L_14705561_SNP [dm3] 3L_14712461_SNP [dm6]	G	A	2.124e^-4	0.672	INTRON ome
3L	14706344	3L_14706344_SNP [dm3] 3L_14713244_SNP [dm6]	G	C	2.124e^-4	0.672	INTRON ome
2L	10924854	2L_10924854_SNP [dm3] 2L_10924854_SNP [dm6]	G	A	2.129e^-4	0.672	INTRON dpr2
3R	2155472	3R_2155472_SNP [dm3] 3R_6329750_SNP [dm6]	G	A	2.132e^-4	0.672	UPSTREAM Osi18 INTERGENIC
3R	13049295	3R_13049295_SNP [dm3] 3R_17223573_SNP [dm6]	C	G	2.135e^-4	0.672	UPSTREAM CG31262 INTERGENIC
3L	17584641	3L_17584641_SNP [dm3] 3L_17591541_SNP [dm6]	G	T	2.137e^-4	0.672	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
2L	4400088	2L_4400088_DEL [dm3] 2L_4400088_DEL [dm6]	TCCC	T	2.143e^-4	0.672	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003
3L	10413839	3L_10413839_SNP [dm3] 3L_10420739_SNP [dm6]	A	G	2.143e^-4	0.672	INTERGENIC
2R	8190491	2R_8190491_SNP [dm3] 2R_12302986_SNP [dm6]	G	T	2.145e^-4	0.672	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2 UPSTREAM CG8850
3R	1687433	3R_1687433_SNP [dm3] 3R_5861711_SNP [dm6]	G	T	2.148e^-4	0.672	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15466386	2R_15466386_SNP [dm3] 2R_19578881_SNP [dm6]	C	G	2.157e^-4	0.672	INTRON sm
3R	14252566	3R_14252566_INS [dm3] 3R_18426844_INS [dm6]	G	GTT	2.158e^-4	0.672	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14252570	3R_14252570_INS [dm3] 3R_18426848_INS [dm6]	C	CT	2.158e^-4	0.672	FRAME_SHIFT fru DOWNSTREAM fru INTRON fru	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23259219	3R_23259219_SNP [dm3] 3R_27433497_SNP [dm6]	A	T	2.158e^-4	0.672	INTRON side
3R	23259489	3R_23259489_SNP [dm3] 3R_27433767_SNP [dm6]	C	A	2.158e^-4	0.672	INTRON side
3R	23259866	3R_23259866_SNP [dm3] 3R_27434144_SNP [dm6]	C	T	2.158e^-4	0.672	INTRON side	TF binding site BDTNP1_TFBS_twi
3R	15049669	3R_15049669_SNP [dm3] 3R_19223947_SNP [dm6]	T	G	2.158e^-4	0.672	INTRON vib
2L	8731838	2L_8731838_SNP [dm3] 2L_8731838_SNP [dm6]	A	G	2.161e^-4	0.672	INTRON raw
2L	8731842	2L_8731842_SNP [dm3] 2L_8731842_SNP [dm6]	A	G	2.161e^-4	0.672	INTRON raw
X	2659263	X_2659263_SNP [dm3] X_2765230_SNP [dm6]	C	T	2.164e^-4	0.672	INTRON kirre	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	9236166	2R_9236166_SNP [dm3] 2R_13348661_SNP [dm6]	G	C	2.165e^-4	0.672	INTRON CR44206
3R	1687346	3R_1687346_DEL [dm3] 3R_5861624_DEL [dm6]	ATGCGAAGCCGCG...	A	2.167e^-4	0.672	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17668057	3R_17668057_SNP [dm3] 3R_21842335_SNP [dm6]	C	G	2.179e^-4	0.672	DOWNSTREAM Gr93b INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	7824958	3L_7824958_DEL [dm3] 3L_7831858_DEL [dm6]	TT	T	2.180e^-4	0.672	INTRON Pdp1
2L	17778893	2L_17778893_SNP [dm3] 2L_17778893_SNP [dm6]	A	C	2.182e^-4	0.672	UPSTREAM CadN INTERGENIC	TF binding site mE1_TFBS_Trl
3R	7520569	3R_7520569_SNP [dm3] 3R_11694847_SNP [dm6]	C	T	2.186e^-4	0.672	UPSTREAM Fer3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
X	18191570	X_18191570_SNP [dm3] X_18297537_SNP [dm6]	T	C	2.188e^-4	0.672	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	13038793	3R_13038793_SNP [dm3] 3R_17213071_SNP [dm6]	A	T	2.192e^-4	0.672	INTERGENIC
3R	11101725	3R_11101725_SNP [dm3] 3R_15276003_SNP [dm6]	G	T	2.192e^-4	0.672	SYNONYMOUS_CODING CG4338 UPSTREAM Cp190 DOWNSTREAM MRG15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	14262002	2R_14262002_SNP [dm3] 2R_18374497_SNP [dm6]	A	C	2.204e^-4	0.674	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14471645	2R_14471645_INS [dm3] 2R_18584140_INS [dm6]	A	AT	2.207e^-4	0.674	UPSTREAM GEFmeso INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16321519	3L_16321519_DEL [dm3] 3L_16328419_DEL [dm6]	AT	A	2.208e^-4	0.674	UPSTREAM CG13058 & 1 other INTERGENIC
X	18187393	X_18187393_SNP [dm3] X_18293360_SNP [dm6]	T	G	2.216e^-4	0.675	DOWNSTREAM CR15061 INTERGENIC
2L	13117351	2L_13117351_SNP [dm3] 2L_13117351_SNP [dm6]	T	A	2.226e^-4	0.677	INTERGENIC
3R	15395299	3R_15395299_SNP [dm3] 3R_19569577_SNP [dm6]	T	G	2.233e^-4	0.678	START_GAINED Dys UTR_5_PRIME Dys INTRON Dys	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2R	13024972	2R_13024972_SNP [dm3] 2R_17137467_SNP [dm6]	C	T	2.239e^-4	0.678	DOWNSTREAM Gbp INTRON CG11395
2L	10478277	2L_10478277_SNP [dm3] 2L_10478277_SNP [dm6]	T	A	2.246e^-4	0.678	INTRON RluA-2
2L	17798505	2L_17798505_SNP [dm3] 2L_17798505_SNP [dm6]	T	C	2.246e^-4	0.678	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2R	14272657	2R_14272657_SNP [dm3] 2R_18385152_SNP [dm6]	C	T	2.248e^-4	0.678	NON_SYNONYMOUS_CODING CG15067 DOWNSTREAM IM1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	5649911	2R_5649911_SNP [dm3] 2R_9762406_SNP [dm6]	T	A	2.261e^-4	0.678	INTRON trpl
2R	6743948	2R_6743948_SNP [dm3] 2R_10856443_SNP [dm6]	C	T	2.261e^-4	0.678	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	20337851	2R_20337851_SNP [dm3] 2R_24450328_SNP [dm6]	G	A	2.266e^-4	0.678	DOWNSTREAM CG4563 INTERGENIC
2L	17807433	2L_17807433_SNP [dm3] 2L_17807433_SNP [dm6]	A	T	2.271e^-4	0.678	INTRON CadN2
3L	10645039	3L_10645039_DEL [dm3] 3L_10651939_DEL [dm6]	ATGAAGATTATGGCGACAA...	A	2.273e^-4	0.678	INTRON CG32066
3L	12969003	3L_12969003_SNP [dm3] 3L_12975903_SNP [dm6]	A	G	2.279e^-4	0.678	INTERGENIC
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	2.280e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7491272	2L_7491272_SNP [dm3] 2L_7491272_SNP [dm6]	T	C	2.283e^-4	0.678	INTRON Ziz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18942204	2R_18942204_SNP [dm3] 2R_23054681_SNP [dm6]	G	C	2.283e^-4	0.678	UPSTREAM CG44252 INTERGENIC
3R	16005337	3R_16005337_INS [dm3] 3R_20179615_INS [dm6]	A	ATGTA	2.292e^-4	0.678	INTERGENIC	TF binding site mE1_TFBS_sbb
X	16690654	X_16690654_SNP [dm3] X_16796621_SNP [dm6]	T	C	2.300e^-4	0.678	UTR_3_PRIME CG4768 DOWNSTREAM CG9132 & 1 other
3R	24329017	3R_24329017_SNP [dm3] 3R_28503295_SNP [dm6]	T	C	2.300e^-4	0.678	SYNONYMOUS_CODING Dhc98D	TF binding site mE1_TFBS_cad
2R	11440746	2R_11440746_SNP [dm3] 2R_15553241_SNP [dm6]	C	G	2.304e^-4	0.678	INTERGENIC
3R	17891188	3R_17891188_SNP [dm3] 3R_22065466_SNP [dm6]	G	A	2.309e^-4	0.678	INTRON how
X	18188276	X_18188276_SNP [dm3] X_18294243_SNP [dm6]	A	G	2.315e^-4	0.678	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2R	5981821	2R_5981821_SNP [dm3] 2R_10094316_SNP [dm6]	T	A	2.317e^-4	0.678	NON_SYNONYMOUS_CODING CG2269	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3238056	2R_3238056_SNP [dm3] 2R_7350551_SNP [dm6]	G	T	2.318e^-4	0.678	INTRON Dscam1	TF binding site mE1_TFBS_inv
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	2.327e^-4	0.678	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	13024917	2R_13024917_SNP [dm3] 2R_17137412_SNP [dm6]	C	T	2.329e^-4	0.678	NON_SYNONYMOUS_CODING CG11395 SPLICE_SITE_REGION CG11395 DOWNSTREAM Gbp
2R	13024935	2R_13024935_SNP [dm3] 2R_17137430_SNP [dm6]	A	T	2.329e^-4	0.678	DOWNSTREAM Gbp INTRON CG11395
X	7791233	X_7791233_SNP [dm3] X_7897200_SNP [dm6]	A	C	2.330e^-4	0.678	DOWNSTREAM CR11386 & 1 other INTERGENIC
2R	10808546	2R_10808546_SNP [dm3] 2R_14921041_SNP [dm6]	G	C	2.334e^-4	0.678	INTRON CG10249
X	21964738	X_21964738_SNP [dm3] X_22562902_SNP [dm6]	A	G	2.334e^-4	0.678	INTERGENIC
3R	23259806	3R_23259806_SNP [dm3] 3R_27434084_SNP [dm6]	C	G	2.338e^-4	0.678	INTRON side	TF binding site BDTNP1_TFBS_twi
2L	8330733	2L_8330733_SNP [dm3] 2L_8330733_SNP [dm6]	A	T	2.339e^-4	0.678	INTRON CG14275
3L	17584628	3L_17584628_SNP [dm3] 3L_17591528_SNP [dm6]	A	C	2.345e^-4	0.678	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl
X	16000796	X_16000796_SNP [dm3] X_16106763_SNP [dm6]	C	A	2.348e^-4	0.678	INTERGENIC
3L	16661937	3L_16661937_SNP [dm3] 3L_16668837_SNP [dm6]	T	A	2.352e^-4	0.678	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_Trl
2L	12983399	2L_12983399_SNP [dm3] 2L_12983399_SNP [dm6]	C	T	2.359e^-4	0.678	INTERGENIC
X	3934607	X_3934607_SNP [dm3] X_4040574_SNP [dm6]	T	C	2.361e^-4	0.678	INTERGENIC
3R	19189396	3R_19189396_SNP [dm3] 3R_23363674_SNP [dm6]	T	A	2.363e^-4	0.678	UPSTREAM CG4408 INTERGENIC
2L	17798351	2L_17798351_SNP [dm3] 2L_17798351_SNP [dm6]	A	G	2.377e^-4	0.681	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2R	9236177	2R_9236177_SNP [dm3] 2R_13348672_SNP [dm6]	A	T	2.387e^-4	0.683	INTRON CR44206
X	21966608	X_21966608_SNP [dm3] X_22564772_SNP [dm6]	A	G	2.396e^-4	0.685	INTERGENIC
3R	12210089	3R_12210089_SNP [dm3] 3R_16384367_SNP [dm6]	C	T	2.413e^-4	0.687	INTRON ss	regulatory region REDfly_CRMs
2R	18257029	2R_18257029_SNP [dm3] 2R_22369524_SNP [dm6]	T	C	2.416e^-4	0.687	INTRON Liprin-gamma
3R	26699987	3R_26699987_SNP [dm3] 3R_30874265_SNP [dm6]	A	G	2.420e^-4	0.687	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22553271	3R_22553271_SNP [dm3] 3R_26727549_SNP [dm6]	C	G	2.425e^-4	0.687	UTR_5_PRIME CG14246 UPSTREAM CG14246 DOWNSTREAM CG14244 INTRON CG14246
2L	17797228	2L_17797228_INS [dm3] 2L_17797228_INS [dm6]	A	AA	2.431e^-4	0.687	INTRON CadN2
2L	17797230	2L_17797230_SNP [dm3] 2L_17797230_SNP [dm6]	A	T	2.431e^-4	0.687	INTRON CadN2
2L	17797237	2L_17797237_SNP [dm3] 2L_17797237_SNP [dm6]	A	C	2.431e^-4	0.687	INTRON CadN2
3R	9724300	3R_9724300_SNP [dm3] 3R_13898578_SNP [dm6]	C	G	2.440e^-4	0.689	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
X	8471036	X_8471036_SNP [dm3] X_8577003_SNP [dm6]	G	T	2.445e^-4	0.689	INTRON CG12065
3R	26284007	3R_26284007_SNP [dm3] 3R_30458285_SNP [dm6]	G	A	2.462e^-4	0.69	SYNONYMOUS_CODING CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10148947	2L_10148947_SNP [dm3] 2L_10148947_SNP [dm6]	C	T	2.466e^-4	0.69	INTRON CG44153 & 1 other
2L	10148948	2L_10148948_SNP [dm3] 2L_10148948_SNP [dm6]	T	C	2.466e^-4	0.69	INTRON CG44153 & 1 other
2L	10148952	2L_10148952_SNP [dm3] 2L_10148952_SNP [dm6]	G	A	2.466e^-4	0.69	INTRON CG44153 & 1 other
X	8375336	X_8375336_SNP [dm3] X_8481303_SNP [dm6]	A	T	2.468e^-4	0.69	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2L	12023691	2L_12023691_SNP [dm3] 2L_12023691_SNP [dm6]	T	C	2.475e^-4	0.69	DOWNSTREAM CR44587 INTERGENIC
X	11705402	X_11705402_SNP [dm3] X_11811369_SNP [dm6]	T	C	2.477e^-4	0.69	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7976241	2L_7976241_SNP [dm3] 2L_7976241_SNP [dm6]	T	A	2.483e^-4	0.69	UTR_5_PRIME Snoo	TF binding site BDTNP1_TFBS_dl
2L	3788179	2L_3788179_SNP [dm3] 2L_3788179_SNP [dm6]	A	G	2.483e^-4	0.69	INTRON CG3921
2L	4682668	2L_4682668_SNP [dm3] 2L_4682668_SNP [dm6]	A	C	2.496e^-4	0.693	UPSTREAM CG11929 DOWNSTREAM Bsg25A INTERGENIC
3L	13723103	3L_13723103_SNP [dm3] 3L_13730003_SNP [dm6]	A	G	2.525e^-4	0.699	INTRON bru-3
3L	21804067	3L_21804067_SNP [dm3] 3L_21810967_SNP [dm6]	A	C	2.525e^-4	0.699	INTRON eg	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10699933	2L_10699933_SNP [dm3] 2L_10699933_SNP [dm6]	A	C	2.531e^-4	0.699	SYNONYMOUS_CODING Lip1	TF binding site mE1_TFBS_cad
2L	10700056	2L_10700056_SNP [dm3] 2L_10700056_SNP [dm6]	A	C	2.531e^-4	0.699	INTRON Lip1	TF binding site mE1_TFBS_cad
3R	14836529	3R_14836529_SNP [dm3] 3R_19010807_SNP [dm6]	G	A	2.554e^-4	0.702	INTRON gukh
3R	2116049	3R_2116049_SNP [dm3] 3R_6290327_SNP [dm6]	C	T	2.556e^-4	0.702	DOWNSTREAM CG15594 INTERGENIC
X	18189048	X_18189048_SNP [dm3] X_18295015_SNP [dm6]	A	G	2.556e^-4	0.702	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	11538095	2R_11538095_SNP [dm3] 2R_15650590_SNP [dm6]	C	A	2.571e^-4	0.705	DOWNSTREAM CG42524 INTRON CG42524
3L	20679773	3L_20679773_SNP [dm3] 3L_20686673_SNP [dm6]	A	T	2.574e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	20523249	2R_20523249_SNP [dm3] 2R_24635726_SNP [dm6]	C	T	2.578e^-4	0.705	INTRON CG13594
X	5019268	X_5019268_SNP [dm3] X_5125235_SNP [dm6]	T	C	2.582e^-4	0.705	INTRON rg & 1 other
2R	14236703	2R_14236703_SNP [dm3] 2R_18349198_SNP [dm6]	T	A	2.591e^-4	0.705	INTRON sbb
X	3615272	X_3615272_SNP [dm3] X_3721239_SNP [dm6]	T	C	2.592e^-4	0.705	INTRON tlk	TF binding site BDTNP1_TFBS_dl
X	3802326	X_3802326_SNP [dm3] X_3908293_SNP [dm6]	C	T	2.595e^-4	0.705	INTRON CG42541
X	8375250	X_8375250_SNP [dm3] X_8481217_SNP [dm6]	C	T	2.600e^-4	0.705	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	16001532	X_16001532_SNP [dm3] X_16107499_SNP [dm6]	A	C	2.605e^-4	0.705	INTERGENIC
3L	3650950	3L_3650950_SNP [dm3] 3L_3650950_SNP [dm6]	C	T	2.618e^-4	0.705	INTRON dar1
3L	17555461	3L_17555461_SNP [dm3] 3L_17562361_SNP [dm6]	G	A	2.624e^-4	0.705	SYNONYMOUS_CODING Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21979618	X_21979618_SNP [dm3] X_22577782_SNP [dm6]	T	A	2.627e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979628	X_21979628_SNP [dm3] X_22577792_SNP [dm6]	C	T	2.627e^-4	0.705	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17901698	3R_17901698_SNP [dm3] 3R_22075976_SNP [dm6]	C	A	2.627e^-4	0.705	INTRON how
3L	16741124	3L_16741124_SNP [dm3] 3L_16748024_SNP [dm6]	T	C	2.628e^-4	0.705	INTERGENIC
3R	2223902	3R_2223902_SNP [dm3] 3R_6398180_SNP [dm6]	G	C	2.629e^-4	0.705	INTRON Dmtn	TF binding site mE1_TFBS_cnc
3L	14669536	3L_14669536_SNP [dm3] 3L_14676436_SNP [dm6]	C	T	2.630e^-4	0.705	INTRON ome & 1 other
2R	3884451	2R_3884451_DEL [dm3] 2R_7996946_DEL [dm6]	AG	A	2.638e^-4	0.706	INTRON Hey
3L	14668858	3L_14668858_DEL [dm3] 3L_14675758_DEL [dm6]	TTT	A	2.648e^-4	0.708	INTRON ome & 1 other
3R	26595432	3R_26595432_SNP [dm3] 3R_30769710_SNP [dm6]	A	G	2.651e^-4	0.708	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	1687336	3R_1687336_SNP [dm3] 3R_5861614_SNP [dm6]	C	A	2.655e^-4	0.708	UPSTREAM CG2017 INTRON CG2017	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20526780	2R_20526780_SNP [dm3] 2R_24639257_SNP [dm6]	A	C	2.660e^-4	0.708	UPSTREAM CG13594 & 1 other INTERGENIC
3L	16660789	3L_16660789_SNP [dm3] 3L_16667689_SNP [dm6]	A	T	2.664e^-4	0.708	UTR_5_PRIME Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	2532205	3R_2532205_SNP [dm3] 3R_6706483_SNP [dm6]	A	T	2.670e^-4	0.708	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	18188231	X_18188231_SNP [dm3] X_18294198_SNP [dm6]	C	A	2.671e^-4	0.708	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA
2L	17798532	2L_17798532_SNP [dm3] 2L_17798532_SNP [dm6]	G	A	2.675e^-4	0.708	SYNONYMOUS_CODING CadN2	TF binding site mE1_TFBS_cad
2L	17797207	2L_17797207_SNP [dm3] 2L_17797207_SNP [dm6]	T	C	2.678e^-4	0.708	INTRON CadN2
3R	16005541	3R_16005541_SNP [dm3] 3R_20179819_SNP [dm6]	G	T	2.697e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	18685882	3R_18685882_SNP [dm3] 3R_22860160_SNP [dm6]	C	T	2.699e^-4	0.709	INTERGENIC
X	18189664	X_18189664_SNP [dm3] X_18295631_SNP [dm6]	T	A	2.701e^-4	0.709	INTERGENIC
2R	13212976	2R_13212976_SNP [dm3] 2R_17325471_SNP [dm6]	C	A	2.707e^-4	0.709	INTRON mbl
3R	6875183	3R_6875183_SNP [dm3] 3R_11049461_SNP [dm6]	A	G	2.708e^-4	0.709	UTR_3_PRIME CG34114
3L	11633506	3L_11633506_SNP [dm3] 3L_11640406_SNP [dm6]	A	G	2.710e^-4	0.709	INTRON CG32091
3L	20249790	3L_20249790_DEL [dm3] 3L_20256690_DEL [dm6]	AATGGGATAGTAGGGGCTTA...	A	2.712e^-4	0.709	INTRON rdgC	TF binding site BDTNP1_TFBS_twi
3R	15820346	3R_15820346_SNP [dm3] 3R_19994624_SNP [dm6]	A	C	2.716e^-4	0.709	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18048835	2R_18048835_SNP [dm3] 2R_22161330_SNP [dm6]	A	T	2.722e^-4	0.709	INTRON a
3L	11311664	3L_11311664_SNP [dm3] 3L_11318564_SNP [dm6]	G	T	2.722e^-4	0.709	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	26069915	3R_26069915_SNP [dm3] 3R_30244193_SNP [dm6]	G	A	2.733e^-4	0.711	SYNONYMOUS_CODING CG9733 UPSTREAM CG9737
3R	19306942	3R_19306942_SNP [dm3] 3R_23481220_SNP [dm6]	G	T	2.735e^-4	0.711	UPSTREAM Ir94f INTERGENIC
X	7089702	X_7089702_SNP [dm3] X_7195669_SNP [dm6]	G	A	2.743e^-4	0.711	UPSTREAM CG9650 INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	12831545	2R_12831545_SNP [dm3] 2R_16944040_SNP [dm6]	A	T	2.743e^-4	0.711	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E
3L	11267594	3L_11267594_SNP [dm3] 3L_11274494_SNP [dm6]	T	C	2.755e^-4	0.711	EXON CR44720	TF binding site mE1_TFBS_HSA
3R	26070102	3R_26070102_SNP [dm3] 3R_30244380_SNP [dm6]	A	G	2.761e^-4	0.711	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
2L	15194740	2L_15194740_SNP [dm3] 2L_15194740_SNP [dm6]	G	C	2.763e^-4	0.711	INTRON CG4168
3L	11633460	3L_11633460_SNP [dm3] 3L_11640360_SNP [dm6]	A	G	2.766e^-4	0.711	INTRON CG32091
3L	3086747	3L_3086747_SNP [dm3] 3L_3086747_SNP [dm6]	C	G	2.771e^-4	0.711	INTRON CG11486
X	3930875	X_3930875_SNP [dm3] X_4036842_SNP [dm6]	C	T	2.777e^-4	0.711	INTERGENIC
3R	22771830	3R_22771830_SNP [dm3] 3R_26946108_SNP [dm6]	G	C	2.785e^-4	0.711	NON_SYNONYMOUS_CODING CG14252 DOWNSTREAM sda	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	8375501	X_8375501_SNP [dm3] X_8481468_SNP [dm6]	C	T	2.786e^-4	0.711	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3L	7386768	3L_7386768_SNP [dm3] 3L_7393668_SNP [dm6]	G	A	2.787e^-4	0.711	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2L	20334426	2L_20334426_SNP [dm3] 2L_20334426_SNP [dm6]	G	T	2.788e^-4	0.711	INTRON spir
3L	19390976	3L_19390976_SNP [dm3] 3L_19397876_SNP [dm6]	T	A	2.809e^-4	0.711	INTRON CG32206
3L	1580489	3L_1580489_SNP [dm3] 3L_1580489_SNP [dm6]	G	A	2.818e^-4	0.711	INTRON CG13917
2L	14873075	2L_14873075_SNP [dm3] 2L_14873075_SNP [dm6]	G	A	2.827e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	10446543	3L_10446543_SNP [dm3] 3L_10453443_SNP [dm6]	A	T	2.833e^-4	0.711	INTERGENIC
X	15183507	X_15183507_SNP [dm3] X_15289474_SNP [dm6]	C	T	2.840e^-4	0.711	UPSTREAM CR44664 EXON CR44663
2L	12203700	2L_12203700_SNP [dm3] 2L_12203700_SNP [dm6]	T	A	2.847e^-4	0.711	INTRON aret
3L	11136891	3L_11136891_SNP [dm3] 3L_11143791_SNP [dm6]	C	A	2.849e^-4	0.711	INTRON CG32082
3R	15049637	3R_15049637_SNP [dm3] 3R_19223915_SNP [dm6]	A	T	2.852e^-4	0.711	INTRON vib
X	8375357	X_8375357_SNP [dm3] X_8481324_SNP [dm6]	A	T	2.866e^-4	0.711	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
2R	8876288	2R_8876288_SNP [dm3] 2R_12988783_SNP [dm6]	C	T	2.870e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21985152	X_21985152_SNP [dm3] X_22583316_SNP [dm6]	G	A	2.870e^-4	0.711	DOWNSTREAM Cda4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10236514	2R_10236514_SNP [dm3] 2R_14349009_SNP [dm6]	C	T	2.873e^-4	0.711	INTRON Shroom
3R	17104259	3R_17104259_SNP [dm3] 3R_21278537_SNP [dm6]	G	T	2.878e^-4	0.711	UTR_3_PRIME SIFaR
X	18835304	X_18835304_DEL [dm3] X_18941271_DEL [dm6]	TT	A	2.880e^-4	0.711	INTRON CG43759
3L	13757700	3L_13757700_SNP [dm3] 3L_13764600_SNP [dm6]	G	T	2.884e^-4	0.711	INTRON bru-3
3L	18133888	3L_18133888_SNP [dm3] 3L_18140788_SNP [dm6]	A	T	2.888e^-4	0.711	INTRON gk
3L	905775	3L_905775_SNP [dm3] 3L_905775_SNP [dm6]	T	C	2.889e^-4	0.711	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5855152	3L_5855152_SNP [dm3] 3L_5862052_SNP [dm6]	A	T	2.897e^-4	0.711	INTERGENIC
3L	5855434	3L_5855434_SNP [dm3] 3L_5862334_SNP [dm6]	C	A	2.897e^-4	0.711	INTERGENIC
X	11705389	X_11705389_SNP [dm3] X_11811356_SNP [dm6]	G	A	2.908e^-4	0.711	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	21965798	X_21965798_SNP [dm3] X_22563962_SNP [dm6]	T	C	2.911e^-4	0.711	INTERGENIC
X	21975409	X_21975409_SNP [dm3] X_22573573_SNP [dm6]	C	T	2.911e^-4	0.711	INTERGENIC	transposable element FlyBase
3L	4842334	3L_4842334_SNP [dm3] 3L_4842334_SNP [dm6]	C	T	2.915e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9732032	3L_9732032_SNP [dm3] 3L_9738932_SNP [dm6]	G	A	2.916e^-4	0.711	SYNONYMOUS_CODING CG42268	TF binding site mE1_TFBS_cad
2R	20518547	2R_20518547_SNP [dm3] 2R_24631024_SNP [dm6]	G	T	2.917e^-4	0.711	UPSTREAM Cyp9c1 INTRON CG13594 EXON CR43787
X	11705418	X_11705418_SNP [dm3] X_11811385_SNP [dm6]	T	G	2.919e^-4	0.711	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	22397480	3R_22397480_SNP [dm3] 3R_26571758_SNP [dm6]	T	C	2.927e^-4	0.711	INTRON scrib
3R	26282321	3R_26282321_SNP [dm3] 3R_30456599_SNP [dm6]	T	G	2.932e^-4	0.711	UTR_3_PRIME CG2224 UPSTREAM aralar1 DOWNSTREAM CG2224
3R	26282358	3R_26282358_SNP [dm3] 3R_30456636_SNP [dm6]	T	C	2.932e^-4	0.711	UTR_3_PRIME CG2224 UPSTREAM aralar1 DOWNSTREAM CG2224
3R	18300689	3R_18300689_SNP [dm3] 3R_22474967_SNP [dm6]	G	A	2.947e^-4	0.711	INTRON Nrx-1
X	6444366	X_6444366_SNP [dm3] X_6550333_SNP [dm6]	C	A	2.950e^-4	0.711	INTRON CG34417	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	8174378	2R_8174378_SNP [dm3] 2R_12286873_SNP [dm6]	C	G	2.953e^-4	0.711	INTRON CG42700
2L	683270	2L_683270_SNP [dm3] 2L_683270_SNP [dm6]	C	A	2.954e^-4	0.711	INTRON ds	TF binding site BDTNP1_TFBS_twi
2L	683393	2L_683393_SNP [dm3] 2L_683393_SNP [dm6]	G	A	2.954e^-4	0.711	INTRON ds
2L	685167	2L_685167_SNP [dm3] 2L_685167_SNP [dm6]	C	G	2.954e^-4	0.711	INTRON ds	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13669739	3R_13669739_SNP [dm3] 3R_17844017_SNP [dm6]	T	A	2.958e^-4	0.711	INTRON tinc
3R	23874172	3R_23874172_SNP [dm3] 3R_28048450_SNP [dm6]	T	C	2.960e^-4	0.711	INTRON CG34362
3R	15370151	3R_15370151_SNP [dm3] 3R_19544429_SNP [dm6]	T	A	2.966e^-4	0.711	INTRON Dys
3R	26070389	3R_26070389_SNP [dm3] 3R_30244667_SNP [dm6]	G	A	2.978e^-4	0.711	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070407	3R_26070407_SNP [dm3] 3R_30244685_SNP [dm6]	C	A	2.978e^-4	0.711	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070415	3R_26070415_SNP [dm3] 3R_30244693_SNP [dm6]	C	A	2.978e^-4	0.711	NON_SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26070678	3R_26070678_SNP [dm3] 3R_30244956_SNP [dm6]	T	A	2.978e^-4	0.711	INTRON CG9733
3R	26071939	3R_26071939_SNP [dm3] 3R_30246217_SNP [dm6]	G	A	2.978e^-4	0.711	INTRON CG9733
3R	26071941	3R_26071941_SNP [dm3] 3R_30246219_SNP [dm6]	T	C	2.978e^-4	0.711	INTRON CG9733
3R	26071956	3R_26071956_SNP [dm3] 3R_30246234_SNP [dm6]	C	T	2.978e^-4	0.711	INTRON CG9733
2L	3130226	2L_3130226_SNP [dm3] 2L_3130226_SNP [dm6]	C	T	2.982e^-4	0.711	DOWNSTREAM CG15403 INTRON toc
3L	17581168	3L_17581168_SNP [dm3] 3L_17588068_SNP [dm6]	C	A	2.988e^-4	0.711	INTRON Eip74EF
X	18187315	X_18187315_SNP [dm3] X_18293282_SNP [dm6]	G	A	2.990e^-4	0.711	DOWNSTREAM CR15061 INTERGENIC
X	18187334	X_18187334_SNP [dm3] X_18293301_SNP [dm6]	T	C	2.990e^-4	0.711	DOWNSTREAM CR15061 INTERGENIC
X	18195485	X_18195485_SNP [dm3] X_18301452_SNP [dm6]	G	C	2.993e^-4	0.711	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7380942	2R_7380942_SNP [dm3] 2R_11493437_SNP [dm6]	C	A	2.995e^-4	0.711	INTRON inv	TF binding site BDTNP1_TFBS_dl
3R	23246093	3R_23246093_SNP [dm3] 3R_27420371_SNP [dm6]	G	A	2.997e^-4	0.711	INTRON side
X	11705517	X_11705517_SNP [dm3] X_11811484_SNP [dm6]	T	A	2.999e^-4	0.711	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	25460457	3R_25460457_SNP [dm3] 3R_29634735_SNP [dm6]	C	G	2.999e^-4	0.711	INTRON Dop1R2
3R	19907924	3R_19907924_SNP [dm3] 3R_24082202_SNP [dm6]	T	A	3.000e^-4	0.711	INTRON 4EHP
2R	13386309	2R_13386309_SNP [dm3] 2R_17498804_SNP [dm6]	C	T	3.002e^-4	0.711	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19669407	3L_19669407_SNP [dm3] 3L_19676307_SNP [dm6]	A	G	3.002e^-4	0.711	INTERGENIC
X	19398092	X_19398092_SNP [dm3] X_19504059_SNP [dm6]	G	T	3.010e^-4	0.711	UPSTREAM Pfrx INTRON Pfrx & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17538916	2R_17538916_SNP [dm3] 2R_21651411_SNP [dm6]	T	C	3.013e^-4	0.711	SYNONYMOUS_CODING CG30284 INTRON CG10082	TF binding site mE1_TFBS_chinmo
2L	12758493	2L_12758493_SNP [dm3] 2L_12758493_SNP [dm6]	T	C	3.018e^-4	0.711	INTERGENIC
2L	8611674	2L_8611674_SNP [dm3] 2L_8611674_SNP [dm6]	G	T	3.018e^-4	0.711	INTRON Sema-1a
2L	12751078	2L_12751078_SNP [dm3] 2L_12751078_SNP [dm6]	T	A	3.021e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	2069151	3R_2069151_SNP [dm3] 3R_6243429_SNP [dm6]	G	A	3.023e^-4	0.711	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14281118	3L_14281118_SNP [dm3] 3L_14288018_SNP [dm6]	C	A	3.037e^-4	0.712	INTRON fz	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	1059482	3L_1059482_SNP [dm3] 3L_1059482_SNP [dm6]	A	C	3.040e^-4	0.712	INTRON bab1
3L	1059483	3L_1059483_SNP [dm3] 3L_1059483_SNP [dm6]	A	C	3.040e^-4	0.712	INTRON bab1
3R	11613964	3R_11613964_SNP [dm3] 3R_15788242_SNP [dm6]	A	G	3.048e^-4	0.712	UTR_3_PRIME CG9590 UPSTREAM CG9589	TF binding site mE1_TFBS_cad
X	11704952	X_11704952_SNP [dm3] X_11810919_SNP [dm6]	T	C	3.057e^-4	0.712	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	11705577	X_11705577_SNP [dm3] X_11811544_SNP [dm6]	A	T	3.057e^-4	0.712	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_inv
X	11706731	X_11706731_SNP [dm3] X_11812698_SNP [dm6]	G	C	3.057e^-4	0.712	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	23307903	3R_23307903_SNP [dm3] 3R_27482181_SNP [dm6]	G	A	3.062e^-4	0.712	UTR_3_PRIME Cyp6a18
2R	10273964	2R_10273964_SNP [dm3] 2R_14386459_SNP [dm6]	C	A	3.067e^-4	0.712	INTERGENIC
X	18885484	X_18885484_SNP [dm3] X_18991451_SNP [dm6]	C	A	3.068e^-4	0.712	INTRON CG43759
2L	12616432	2L_12616432_SNP [dm3] 2L_12616432_SNP [dm6]	A	G	3.070e^-4	0.712	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3R	10837114	3R_10837114_SNP [dm3] 3R_15011392_SNP [dm6]	G	C	3.081e^-4	0.713	INTERGENIC
3L	15214237	3L_15214237_SNP [dm3] 3L_15221137_SNP [dm6]	A	T	3.084e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20441106	X_20441106_SNP [dm3] X_20570079_SNP [dm6]	A	C	3.091e^-4	0.713	INTERGENIC
3R	17399584	3R_17399584_SNP [dm3] 3R_21573862_SNP [dm6]	G	A	3.094e^-4	0.713	SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14266868	2R_14266868_SNP [dm3] 2R_18379363_SNP [dm6]	A	G	3.102e^-4	0.713	INTERGENIC	TF binding site mE1_TFBS_cad
3L	8117602	3L_8117602_SNP [dm3] 3L_8124502_SNP [dm6]	A	G	3.106e^-4	0.713	UTR_5_PRIME CG7550 DOWNSTREAM mRpL36 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8580851	3L_8580851_SNP [dm3] 3L_8587751_SNP [dm6]	C	T	3.107e^-4	0.713	SYNONYMOUS_CODING CG43078 UTR_5_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3L	17551271	3L_17551271_SNP [dm3] 3L_17558171_SNP [dm6]	A	G	3.112e^-4	0.713	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26111910	3R_26111910_SNP [dm3] 3R_30286188_SNP [dm6]	C	G	3.113e^-4	0.713	INTRON hdc
3L	6310922	3L_6310922_SNP [dm3] 3L_6317822_SNP [dm6]	C	T	3.127e^-4	0.713	INTERGENIC	regulatory region REDfly_CRMs
3R	2064418	3R_2064418_SNP [dm3] 3R_6238696_SNP [dm6]	A	G	3.128e^-4	0.713	INTERGENIC	transposable element FlyBase
3R	24976253	3R_24976253_SNP [dm3] 3R_29150531_SNP [dm6]	C	A	3.129e^-4	0.713	SYNONYMOUS_CODING ligatin DOWNSTREAM Pglym78	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	17559749	3L_17559749_SNP [dm3] 3L_17566649_SNP [dm6]	C	G	3.131e^-4	0.713	UPSTREAM snoRNA:Me28S-A576 INTRON Eip74EF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20480100	2R_20480100_SNP [dm3] 2R_24592577_SNP [dm6]	G	A	3.136e^-4	0.713	UTR_3_PRIME pio INTRON pio
3R	8364374	3R_8364374_SNP [dm3] 3R_12538652_SNP [dm6]	A	G	3.136e^-4	0.713	INTRON Octbeta3R
2L	10700045	2L_10700045_SNP [dm3] 2L_10700045_SNP [dm6]	T	G	3.139e^-4	0.713	INTRON Lip1	TF binding site mE1_TFBS_cad
3R	18450175	3R_18450175_SNP [dm3] 3R_22624453_SNP [dm6]	T	G	3.155e^-4	0.713	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	14778228	2L_14778228_DEL [dm3] 2L_14778228_DEL [dm6]	AAA	A	3.157e^-4	0.713	INTERGENIC
2L	4400707	2L_4400707_SNP [dm3] 2L_4400707_SNP [dm6]	T	G	3.162e^-4	0.713	UPSTREAM CG33003 DOWNSTREAM l_2_k05819 INTERGENIC
2R	8876287	2R_8876287_SNP [dm3] 2R_12988782_SNP [dm6]	T	A	3.164e^-4	0.713	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	13024949	2R_13024949_SNP [dm3] 2R_17137444_SNP [dm6]	T	A	3.168e^-4	0.713	DOWNSTREAM Gbp INTRON CG11395
3L	4056259	3L_4056259_SNP [dm3] 3L_4056259_SNP [dm6]	A	G	3.169e^-4	0.713	INTRON CG1136
3L	9824826	3L_9824826_SNP [dm3] 3L_9831726_SNP [dm6]	A	G	3.170e^-4	0.713	INTRON CG43897
2L	12779647	2L_12779647_SNP [dm3] 2L_12779647_SNP [dm6]	G	A	3.170e^-4	0.713	INTERGENIC
X	8375346	X_8375346_SNP [dm3] X_8481313_SNP [dm6]	A	G	3.175e^-4	0.713	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375359	X_8375359_SNP [dm3] X_8481326_SNP [dm6]	A	T	3.175e^-4	0.713	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	23308435	3R_23308435_SNP [dm3] 3R_27482713_SNP [dm6]	G	T	3.198e^-4	0.718	UTR_3_PRIME Cyp6a18
3R	13038783	3R_13038783_SNP [dm3] 3R_17213061_SNP [dm6]	G	A	3.205e^-4	0.718	INTERGENIC
X	3802728	X_3802728_SNP [dm3] X_3908695_SNP [dm6]	T	C	3.220e^-4	0.721	INTRON CG42541
3L	3647465	3L_3647465_SNP [dm3] 3L_3647465_SNP [dm6]	A	T	3.233e^-4	0.722	INTRON dar1	TF binding site mE1_TFBS_chinmo
3R	6827738	3R_6827738_SNP [dm3] 3R_11002016_SNP [dm6]	A	C	3.240e^-4	0.722	INTRON CG34114
2R	9293163	2R_9293163_SNP [dm3] 2R_13405658_SNP [dm6]	G	T	3.241e^-4	0.722	INTERGENIC
3R	15249883	3R_15249883_SNP [dm3] 3R_19424161_SNP [dm6]	C	T	3.242e^-4	0.722	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
2R	10249447	2R_10249447_SNP [dm3] 2R_14361942_SNP [dm6]	T	C	3.243e^-4	0.722	UTR_5_PRIME Arc2 UPSTREAM CR10102
2R	17325486	2R_17325486_SNP [dm3] 2R_21437981_SNP [dm6]	G	C	3.259e^-4	0.722	INTRON Sdc
2L	2694620	2L_2694620_SNP [dm3] 2L_2694620_SNP [dm6]	T	A	3.273e^-4	0.722	DOWNSTREAM CG15398 INTRON CG31690
3L	19997329	3L_19997329_SNP [dm3] 3L_20004229_SNP [dm6]	A	C	3.274e^-4	0.722	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	19283281	3L_19283281_SNP [dm3] 3L_19290181_SNP [dm6]	G	C	3.275e^-4	0.722	INTRON Gbs-76A
3R	15049650	3R_15049650_SNP [dm3] 3R_19223928_SNP [dm6]	G	A	3.280e^-4	0.722	INTRON vib
2L	13310579	2L_13310579_SNP [dm3] 2L_13310579_SNP [dm6]	C	G	3.280e^-4	0.722	INTRON CG43778
3R	9772878	3R_9772878_SNP [dm3] 3R_13947156_SNP [dm6]	A	C	3.295e^-4	0.722	INTERGENIC
3R	1749652	3R_1749652_INS [dm3] 3R_5923930_INS [dm6]	A	AT	3.298e^-4	0.722	INTRON CG34113	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4829633	2L_4829633_SNP [dm3] 2L_4829633_SNP [dm6]	G	A	3.298e^-4	0.722	SYNONYMOUS_CODING CG2976 DOWNSTREAM CG15628 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	13547994	3R_13547994_SNP [dm3] 3R_17722272_SNP [dm6]	T	C	3.302e^-4	0.722	SYNONYMOUS_CODING Pxt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	633424	2L_633424_SNP [dm3] 2L_633424_SNP [dm6]	T	A	3.303e^-4	0.722	INTERGENIC
2R	8242479	2R_8242479_SNP [dm3] 2R_12354974_SNP [dm6]	C	T	3.303e^-4	0.722	SYNONYMOUS_CODING CG30047 UPSTREAM CG30049	TF binding site mE1_TFBS_sens
3R	1104999	3R_1104999_SNP [dm3] 3R_5279277_SNP [dm6]	G	C	3.305e^-4	0.722	INTRON mtd
2R	18748683	2R_18748683_SNP [dm3] 2R_22861160_SNP [dm6]	G	T	3.310e^-4	0.722	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	21724804	3R_21724804_SNP [dm3] 3R_25899082_SNP [dm6]	G	A	3.318e^-4	0.722	SYNONYMOUS_CODING MCO3 UPSTREAM CG31091	TF binding site mE1_TFBS_sens
2R	20184835	2R_20184835_SNP [dm3] 2R_24297312_SNP [dm6]	C	G	3.326e^-4	0.722	SYNONYMOUS_CODING CG3394	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11705112	X_11705112_SNP [dm3] X_11811079_SNP [dm6]	C	T	3.328e^-4	0.722	SYNONYMOUS_CODING CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12607124	2L_12607124_SNP [dm3] 2L_12607124_SNP [dm6]	A	C	3.329e^-4	0.722	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9545474	3R_9545474_SNP [dm3] 3R_13719752_SNP [dm6]	A	G	3.329e^-4	0.722	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	20312662	2L_20312662_SNP [dm3] 2L_20312662_SNP [dm6]	C	A	3.330e^-4	0.722	INTRON spir
3R	2074661	3R_2074661_SNP [dm3] 3R_6248939_SNP [dm6]	G	T	3.332e^-4	0.722	UPSTREAM Osi7 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	20312646	2L_20312646_SNP [dm3] 2L_20312646_SNP [dm6]	A	C	3.332e^-4	0.722	INTRON spir
3R	7534976	3R_7534976_SNP [dm3] 3R_11709254_SNP [dm6]	A	G	3.334e^-4	0.722	INTERGENIC
X	20439482	X_20439482_SNP [dm3] X_20568455_SNP [dm6]	C	A	3.347e^-4	0.724	INTERGENIC
2R	16983536	2R_16983536_SNP [dm3] 2R_21096031_SNP [dm6]	C	T	3.354e^-4	0.725	UTR_3_PRIME CG4038 INTRON CG34396
3L	18627566	3L_18627566_SNP [dm3] 3L_18634466_SNP [dm6]	A	T	3.358e^-4	0.725	INTRON MYPT-75D
2L	20317123	2L_20317123_INS [dm3] 2L_20317123_INS [dm6]	G	GTGG	3.361e^-4	0.725	INTRON spir & 1 other
3R	20448259	3R_20448259_SNP [dm3] 3R_24622537_SNP [dm6]	C	G	3.365e^-4	0.725	INTRON mld
3R	4299267	3R_4299267_SNP [dm3] 3R_8473545_SNP [dm6]	T	G	3.369e^-4	0.725	INTRON CG45263
3R	23490863	3R_23490863_SNP [dm3] 3R_27665141_SNP [dm6]	A	G	3.373e^-4	0.725	SYNONYMOUS_CODING unc80	TF binding site mE1_TFBS_cad
3L	14152388	3L_14152388_SNP [dm3] 3L_14159288_SNP [dm6]	G	A	3.381e^-4	0.725	INTERGENIC	regulatory region REDfly_CRMs
2R	19066841	2R_19066841_SNP [dm3] 2R_23179318_SNP [dm6]	G	T	3.383e^-4	0.725	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	11195088	X_11195088_SNP [dm3] X_11301055_SNP [dm6]	C	T	3.389e^-4	0.725	INTRON CG44422
2L	12763422	2L_12763422_SNP [dm3] 2L_12763422_SNP [dm6]	T	C	3.392e^-4	0.725	INTERGENIC
2L	4400094	2L_4400094_SNP [dm3] 2L_4400094_SNP [dm6]	C	G	3.395e^-4	0.725	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003
3R	26133306	3R_26133306_SNP [dm3] 3R_30307584_SNP [dm6]	C	T	3.398e^-4	0.725	UPSTREAM CG34300 INTRON hdc
X	14779817	X_14779817_SNP [dm3] X_14885784_SNP [dm6]	C	A	3.400e^-4	0.725	DOWNSTREAM CG9514 INTRON Flo2
3R	3554648	3R_3554648_SNP [dm3] 3R_7728926_SNP [dm6]	A	T	3.405e^-4	0.725	INTERGENIC
3L	17551042	3L_17551042_SNP [dm3] 3L_17557942_SNP [dm6]	C	T	3.423e^-4	0.728	UPSTREAM CycT DOWNSTREAM Eip74EF INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16983550	2R_16983550_SNP [dm3] 2R_21096045_SNP [dm6]	T	A	3.432e^-4	0.728	UTR_3_PRIME CG4038 INTRON CG34396
2L	13117215	2L_13117215_SNP [dm3] 2L_13117215_SNP [dm6]	A	G	3.437e^-4	0.728	INTERGENIC
2L	2269353	2L_2269353_SNP [dm3] 2L_2269353_SNP [dm6]	C	G	3.438e^-4	0.728	UPSTREAM CG17242 INTERGENIC
3L	6307919	3L_6307919_SNP [dm3] 3L_6314819_SNP [dm6]	C	T	3.441e^-4	0.728	INTERGENIC
3R	20130751	3R_20130751_SNP [dm3] 3R_24305029_SNP [dm6]	T	G	3.446e^-4	0.728	INTRON crb	TF binding site mE1_TFBS_cad
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	3.458e^-4	0.728	INTRON Ca-beta
3R	15250006	3R_15250006_SNP [dm3] 3R_19424284_SNP [dm6]	G	A	3.467e^-4	0.728	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
2L	9933926	2L_9933926_SNP [dm3] 2L_9933926_SNP [dm6]	A	G	3.471e^-4	0.728	UPSTREAM Cpr30F DOWNSTREAM CG31712 INTERGENIC
2R	8243020	2R_8243020_SNP [dm3] 2R_12355515_SNP [dm6]	T	A	3.471e^-4	0.728	UPSTREAM CG30049 DOWNSTREAM CG30047 INTERGENIC
2L	16756231	2L_16756231_SNP [dm3] 2L_16756231_SNP [dm6]	C	T	3.482e^-4	0.728	INTRON yellow-b
X	6331855	X_6331855_SNP [dm3] X_6437822_SNP [dm6]	G	T	3.487e^-4	0.728	INTRON CG42340
X	11706866	X_11706866_SNP [dm3] X_11812833_SNP [dm6]	T	G	3.487e^-4	0.728	INTRON CG1578	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	20267951	2L_20267951_SNP [dm3] 2L_20267951_SNP [dm6]	A	G	3.492e^-4	0.728	INTERGENIC
X	3985693	X_3985693_SNP [dm3] X_4091660_SNP [dm6]	G	A	3.506e^-4	0.728	UTR_3_PRIME CG43689 DOWNSTREAM CG43689
X	3793894	X_3793894_SNP [dm3] X_3899861_SNP [dm6]	G	C	3.516e^-4	0.728	INTRON CG42541
2L	10928335	2L_10928335_SNP [dm3] 2L_10928335_SNP [dm6]	G	A	3.520e^-4	0.728	INTRON dpr2
2R	9773370	2R_9773370_SNP [dm3] 2R_13885865_SNP [dm6]	C	G	3.534e^-4	0.728	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad
2L	9430951	2L_9430951_SNP [dm3] 2L_9430951_SNP [dm6]	G	A	3.543e^-4	0.728	UTR_5_PRIME FucTB UPSTREAM FucTB & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26283833	3R_26283833_SNP [dm3] 3R_30458111_SNP [dm6]	A	T	3.546e^-4	0.728	INTRON CG2224	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10200900	X_10200900_SNP [dm3] X_10306867_SNP [dm6]	T	C	3.547e^-4	0.728	INTRON alpha-Man-I
3L	13582601	3L_13582601_SNP [dm3] 3L_13589501_SNP [dm6]	A	G	3.552e^-4	0.728	INTRON bru-3
3L	989005	3L_989005_SNP [dm3] 3L_989005_SNP [dm6]	T	C	3.564e^-4	0.728	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	1684822	3R_1684822_SNP [dm3] 3R_5859100_SNP [dm6]	C	A	3.564e^-4	0.728	NON_SYNONYMOUS_CODING CG2017
3R	18450177	3R_18450177_SNP [dm3] 3R_22624455_SNP [dm6]	T	G	3.567e^-4	0.728	INTRON loco	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	21981584	X_21981584_SNP [dm3] X_22579748_SNP [dm6]	G	C	3.572e^-4	0.728	INTERGENIC
X	14258363	X_14258363_SNP [dm3] X_14364330_SNP [dm6]	T	C	3.580e^-4	0.728	INTRON dpr8
3L	7203759	3L_7203759_DEL [dm3] 3L_7210659_DEL [dm6]	CTTCTTCC	C	3.590e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_inv
2R	20480313	2R_20480313_SNP [dm3] 2R_24592790_SNP [dm6]	C	A	3.621e^-4	0.728	DOWNSTREAM pio INTRON pio
2L	5105357	2L_5105357_SNP [dm3] 2L_5105357_SNP [dm6]	C	A	3.626e^-4	0.728	INTRON Msp300
2R	8174397	2R_8174397_SNP [dm3] 2R_12286892_SNP [dm6]	T	C	3.626e^-4	0.728	INTRON CG42700
3L	11468550	3L_11468550_SNP [dm3] 3L_11475450_SNP [dm6]	C	A	3.633e^-4	0.728	SYNONYMOUS_CODING Vha16-2
3L	11477865	3L_11477865_SNP [dm3] 3L_11484765_SNP [dm6]	T	C	3.633e^-4	0.728	INTERGENIC
3L	9931622	3L_9931622_SNP [dm3] 3L_9938522_SNP [dm6]	A	G	3.653e^-4	0.728	INTRON CG34356
3L	9931641	3L_9931641_SNP [dm3] 3L_9938541_SNP [dm6]	G	A	3.653e^-4	0.728	INTRON CG34356
2R	13388336	2R_13388336_SNP [dm3] 2R_17500831_SNP [dm6]	T	C	3.657e^-4	0.728	INTERGENIC	TF binding site mE1_TFBS_inv
3R	13552010	3R_13552010_SNP [dm3] 3R_17726288_SNP [dm6]	A	G	3.673e^-4	0.728	INTRON Lgr1	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14965402	3L_14965402_SNP [dm3] 3L_14972302_SNP [dm6]	T	G	3.676e^-4	0.728	UPSTREAM Brd INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11097614	3R_11097614_SNP [dm3] 3R_15271892_SNP [dm6]	C	T	3.680e^-4	0.728	SYNONYMOUS_CODING Cp190	TF binding site mE1_TFBS_sens
3R	1821640	3R_1821640_SNP [dm3] 3R_5995918_SNP [dm6]	T	A	3.684e^-4	0.728	UPSTREAM CR44928 INTERGENIC
2L	14778172	2L_14778172_SNP [dm3] 2L_14778172_SNP [dm6]	A	G	3.696e^-4	0.728	INTERGENIC
3L	3350119	3L_3350119_DEL [dm3] 3L_3350119_DEL [dm6]	CT	C	3.719e^-4	0.728	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3350128	3L_3350128_SNP [dm3] 3L_3350128_SNP [dm6]	G	C	3.719e^-4	0.728	UTR_5_PRIME kst INTRON kst	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	21961830	X_21961830_DEL [dm3] X_22559994_DEL [dm6]	TCAACATTATGACAG...	T	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21972015	X_21972015_SNP [dm3] X_22570179_SNP [dm6]	T	A	3.724e^-4	0.728	INTERGENIC
X	21972016	X_21972016_SNP [dm3] X_22570180_SNP [dm6]	C	A	3.724e^-4	0.728	INTERGENIC
X	21972056	X_21972056_SNP [dm3] X_22570220_SNP [dm6]	T	A	3.724e^-4	0.728	INTERGENIC
X	21972083	X_21972083_SNP [dm3] X_22570247_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC
X	21972923	X_21972923_SNP [dm3] X_22571087_SNP [dm6]	C	A	3.724e^-4	0.728	INTERGENIC
X	21972928	X_21972928_SNP [dm3] X_22571092_SNP [dm6]	G	T	3.724e^-4	0.728	INTERGENIC
X	21973164	X_21973164_SNP [dm3] X_22571328_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC
X	21973311	X_21973311_SNP [dm3] X_22571475_SNP [dm6]	A	T	3.724e^-4	0.728	INTERGENIC
X	21973312	X_21973312_SNP [dm3] X_22571476_SNP [dm6]	T	C	3.724e^-4	0.728	INTERGENIC
X	21973382	X_21973382_SNP [dm3] X_22571546_SNP [dm6]	T	C	3.724e^-4	0.728	INTERGENIC
X	21973398	X_21973398_SNP [dm3] X_22571562_SNP [dm6]	C	A	3.724e^-4	0.728	INTERGENIC
X	21973411	X_21973411_SNP [dm3] X_22571575_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC
X	21973474	X_21973474_SNP [dm3] X_22571638_SNP [dm6]	G	C	3.724e^-4	0.728	INTERGENIC
X	21974329	X_21974329_SNP [dm3] X_22572493_SNP [dm6]	C	T	3.724e^-4	0.728	INTERGENIC
X	21975301	X_21975301_SNP [dm3] X_22573465_SNP [dm6]	C	T	3.724e^-4	0.728	INTERGENIC
X	21975373	X_21975373_SNP [dm3] X_22573537_SNP [dm6]	C	T	3.724e^-4	0.728	INTERGENIC	transposable element FlyBase
X	21977231	X_21977231_SNP [dm3] X_22575395_SNP [dm6]	T	C	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
X	21979525	X_21979525_SNP [dm3] X_22577689_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979538	X_21979538_SNP [dm3] X_22577702_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979545	X_21979545_SNP [dm3] X_22577709_SNP [dm6]	C	T	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21979559	X_21979559_SNP [dm3] X_22577723_SNP [dm6]	C	T	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981074	X_21981074_SNP [dm3] X_22579238_SNP [dm6]	T	G	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981377	X_21981377_SNP [dm3] X_22579541_SNP [dm6]	A	G	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21981409	X_21981409_SNP [dm3] X_22579573_SNP [dm6]	G	C	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21982300	X_21982300_SNP [dm3] X_22580464_SNP [dm6]	G	A	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21982557	X_21982557_SNP [dm3] X_22580721_SNP [dm6]	C	G	3.724e^-4	0.728	INTERGENIC
X	21984047	X_21984047_SNP [dm3] X_22582211_SNP [dm6]	A	C	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21984258	X_21984258_SNP [dm3] X_22582422_SNP [dm6]	T	C	3.724e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15076304	2R_15076304_SNP [dm3] 2R_19188799_SNP [dm6]	A	T	3.730e^-4	0.728	INTRON hppy
3R	13926543	3R_13926543_SNP [dm3] 3R_18100821_SNP [dm6]	G	A	3.731e^-4	0.728	INTRON sr
2L	6010487	2L_6010487_SNP [dm3] 2L_6010487_SNP [dm6]	G	A	3.732e^-4	0.728	SYNONYMOUS_CODING CG9098	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	17797001	2L_17797001_SNP [dm3] 2L_17797001_SNP [dm6]	C	T	3.739e^-4	0.728	INTRON CadN2
3L	4881288	3L_4881288_SNP [dm3] 3L_4881288_SNP [dm6]	A	T	3.740e^-4	0.728	INTRON CG17150
3L	5864811	3L_5864811_SNP [dm3] 3L_5871711_SNP [dm6]	C	A	3.744e^-4	0.728	SYNONYMOUS_CODING CG5568
2R	8876279	2R_8876279_SNP [dm3] 2R_12988774_SNP [dm6]	A	C	3.748e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	13193481	3L_13193481_SNP [dm3] 3L_13200381_SNP [dm6]	G	A	3.750e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	9909301	3R_9909301_INS [dm3] 3R_14083579_INS [dm6]	A	AGAAA	3.768e^-4	0.728	INTRON foxo
2L	20312650	2L_20312650_SNP [dm3] 2L_20312650_SNP [dm6]	A	C	3.771e^-4	0.728	INTRON spir
2L	2694065	2L_2694065_SNP [dm3] 2L_2694065_SNP [dm6]	T	C	3.774e^-4	0.728	INTRON CG31690
X	9680164	X_9680164_SNP [dm3] X_9786131_SNP [dm6]	G	A	3.801e^-4	0.728	INTRON CG32698	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11181742	3R_11181742_SNP [dm3] 3R_15356020_SNP [dm6]	C	T	3.805e^-4	0.728	SYNONYMOUS_CODING Atg4b	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	11707224	X_11707224_SNP [dm3] X_11813191_SNP [dm6]	T	C	3.808e^-4	0.728	INTRON CG1578	TF binding site mE1_TFBS_inv
3R	15049583	3R_15049583_SNP [dm3] 3R_19223861_SNP [dm6]	T	G	3.817e^-4	0.728	INTRON vib
2L	7180999	2L_7180999_SNP [dm3] 2L_7180999_SNP [dm6]	C	G	3.822e^-4	0.728	INTERGENIC
3L	9864719	3L_9864719_SNP [dm3] 3L_9871619_SNP [dm6]	A	G	3.826e^-4	0.728	DOWNSTREAM CG8108 INTERGENIC
2L	12164750	2L_12164750_SNP [dm3] 2L_12164750_SNP [dm6]	G	C	3.832e^-4	0.728	SYNONYMOUS_CODING ZnT33D INTRON CG31760
2R	13024769	2R_13024769_SNP [dm3] 2R_17137264_SNP [dm6]	C	T	3.837e^-4	0.728	START_GAINED CG11395 UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
2R	13024778	2R_13024778_SNP [dm3] 2R_17137273_SNP [dm6]	G	A	3.837e^-4	0.728	UTR_5_PRIME CG11395 DOWNSTREAM CR44391 & 1 other
2L	2694411	2L_2694411_SNP [dm3] 2L_2694411_SNP [dm6]	A	T	3.840e^-4	0.728	DOWNSTREAM CG15398 INTRON CG31690
2L	2694591	2L_2694591_SNP [dm3] 2L_2694591_SNP [dm6]	A	T	3.840e^-4	0.728	DOWNSTREAM CG15398 INTRON CG31690
2L	2694727	2L_2694727_SNP [dm3] 2L_2694727_SNP [dm6]	C	T	3.840e^-4	0.728	DOWNSTREAM CG15398 INTRON CG31690
3L	1356053	3L_1356053_SNP [dm3] 3L_1356053_SNP [dm6]	A	C	3.842e^-4	0.728	INTRON Ptp61F	TF binding site mE1_TFBS_inv
2R	16983599	2R_16983599_SNP [dm3] 2R_21096094_SNP [dm6]	T	G	3.842e^-4	0.728	UTR_3_PRIME CG4038 INTRON CG34396
3L	10716845	3L_10716845_SNP [dm3] 3L_10723745_SNP [dm6]	G	A	3.845e^-4	0.728	INTERGENIC
2L	13327952	2L_13327952_INS [dm3] 2L_13327952_INS [dm6]	C	CC	3.846e^-4	0.728	INTRON CG43778
2R	8309132	2R_8309132_SNP [dm3] 2R_12421627_SNP [dm6]	G	T	3.852e^-4	0.728	INTRON CG8834	TF binding site mE1_TFBS_cad
3L	5989036	3L_5989036_SNP [dm3] 3L_5995936_SNP [dm6]	T	A	3.852e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8117607	3L_8117607_SNP [dm3] 3L_8124507_SNP [dm6]	A	G	3.852e^-4	0.728	UTR_5_PRIME CG7550 DOWNSTREAM mRpL36 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	15128971	2L_15128971_SNP [dm3] 2L_15128971_SNP [dm6]	A	G	3.853e^-4	0.728	UPSTREAM CR43854 EXON CR44706
3L	13292712	3L_13292712_INS [dm3] 3L_13299612_INS [dm6]	A	ATT	3.855e^-4	0.728	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
X	18191300	X_18191300_SNP [dm3] X_18297267_SNP [dm6]	G	A	3.855e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	18191715	X_18191715_DEL [dm3] X_18297682_DEL [dm6]	TTA	T	3.855e^-4	0.728	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	18191845	X_18191845_SNP [dm3] X_18297812_SNP [dm6]	G	A	3.855e^-4	0.728	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	13690028	3R_13690028_SNP [dm3] 3R_17864306_SNP [dm6]	G	A	3.859e^-4	0.728	INTRON tinc
X	18191626	X_18191626_SNP [dm3] X_18297593_SNP [dm6]	C	A	3.860e^-4	0.728	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	4110295	2L_4110295_SNP [dm3] 2L_4110295_SNP [dm6]	A	G	3.860e^-4	0.728	INTRON ed
3L	11252075	3L_11252075_SNP [dm3] 3L_11258975_SNP [dm6]	G	A	3.869e^-4	0.728	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	15932295	3L_15932295_SNP [dm3] 3L_15939195_SNP [dm6]	G	A	3.869e^-4	0.728	INTRON Pka-C3
X	8876544	X_8876544_SNP [dm3] X_8982511_SNP [dm6]	A	G	3.870e^-4	0.728	INTRON rdgA & 1 other
2L	20312631	2L_20312631_SNP [dm3] 2L_20312631_SNP [dm6]	T	C	3.871e^-4	0.728	INTRON spir
2L	10928315	2L_10928315_SNP [dm3] 2L_10928315_SNP [dm6]	G	A	3.871e^-4	0.728	INTRON dpr2
X	5224806	X_5224806_SNP [dm3] X_5330773_SNP [dm6]	G	C	3.872e^-4	0.728	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23244837	3R_23244837_DEL [dm3] 3R_27419115_DEL [dm6]	ACTCATATGGCAA...	T	3.892e^-4	0.73	INTRON side	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14949644	2L_14949644_SNP [dm3] 2L_14949644_SNP [dm6]	A	C	3.895e^-4	0.73	INTRON CG42313
3L	11146354	3L_11146354_SNP [dm3] 3L_11153254_SNP [dm6]	T	C	3.903e^-4	0.731	INTRON CG32082
3L	15543634	3L_15543634_SNP [dm3] 3L_15550534_SNP [dm6]	A	T	3.911e^-4	0.731	NON_SYNONYMOUS_CODING CrebA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10443821	3L_10443821_SNP [dm3] 3L_10450721_SNP [dm6]	A	C	3.912e^-4	0.731	INTERGENIC
2R	19900392	2R_19900392_DEL [dm3] 2R_24012869_DEL [dm6]	TG	C	3.918e^-4	0.731	UPSTREAM Unc-89 INTRON Unc-89	TF binding site mE1_TFBS_chinmo
2R	10611643	2R_10611643_SNP [dm3] 2R_14724138_SNP [dm6]	G	C	3.921e^-4	0.731	INTERGENIC
X	5196655	X_5196655_SNP [dm3] X_5302622_SNP [dm6]	T	C	3.922e^-4	0.731	SYNONYMOUS_CODING CG42749 DOWNSTREAM CG3323 INTRON CG42749
3L	16460947	3L_16460947_SNP [dm3] 3L_16467847_SNP [dm6]	A	T	3.924e^-4	0.731	INTRON CG33158
2R	8282575	2R_8282575_SNP [dm3] 2R_12395070_SNP [dm6]	C	A	3.945e^-4	0.733	UTR_5_PRIME CG30048 DOWNSTREAM Or49a

By genomic position
Variant impact
Gene name

pc_Other phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results