DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=8.101e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1904 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	9686951	X_9686951_SNP [dm3] X_9792918_SNP [dm6]	A	T	4.040e^-6	0.894	INTRON CG32698
X	9686909	X_9686909_INS [dm3] X_9792876_INS [dm6]	T	TT	4.409e^-6	0.894	INTRON CG32698
2L	14530847	2L_14530847_SNP [dm3] 2L_14530847_SNP [dm6]	T	A	5.271e^-6	0.894	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
X	8665972	X_8665972_SNP [dm3] X_8771939_SNP [dm6]	T	C	5.690e^-6	0.894	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11746616	3L_11746616_SNP [dm3] 3L_11753516_SNP [dm6]	G	A	6.743e^-6	0.894	INTRON CG6024
3R	20039032	3R_20039032_SNP [dm3] 3R_24213310_SNP [dm6]	T	G	7.578e^-6	0.894	INTRON twin	TF binding site BDTNP1_TFBS_twi
X	9686901	X_9686901_DEL [dm3] X_9792868_DEL [dm6]	TTTCTT	T	7.805e^-6	0.894	INTRON CG32698
3L	2830226	3L_2830226_SNP [dm3] 3L_2830226_SNP [dm6]	A	G	7.939e^-6	0.894	INTRON CG43444
X	9686875	X_9686875_SNP [dm3] X_9792842_SNP [dm6]	G	A	7.980e^-6	0.894	INTRON CG32698
3R	26982367	3R_26982367_SNP [dm3] 3R_31156645_SNP [dm6]	T	C	8.706e^-6	0.894	INTRON Gycbeta100B
2R	17028111	2R_17028111_SNP [dm3] 2R_21140606_SNP [dm6]	T	C	8.732e^-6	0.894	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	9686820	X_9686820_SNP [dm3] X_9792787_SNP [dm6]	G	T	8.845e^-6	0.894	INTRON CG32698
X	11103244	X_11103244_SNP [dm3] X_11209211_SNP [dm6]	C	T	9.130e^-6	0.894	INTERGENIC
3L	3987329	3L_3987329_SNP [dm3] 3L_3987329_SNP [dm6]	T	C	9.131e^-6	0.894	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6224806	2L_6224806_SNP [dm3] 2L_6224806_SNP [dm6]	C	A	9.186e^-6	0.894	UPSTREAM Ugt37b1 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4163550	2L_4163550_SNP [dm3] 2L_4163550_SNP [dm6]	T	C	1.112e^-5	0.894	INTERGENIC
3L	4734982	3L_4734982_SNP [dm3] 3L_4734982_SNP [dm6]	T	C	1.142e^-5	0.894	INTRON RhoGEF64C
2L	14900310	2L_14900310_SNP [dm3] 2L_14900310_SNP [dm6]	T	G	1.210e^-5	0.894	INTERGENIC
3L	17502954	3L_17502954_SNP [dm3] 3L_17509854_SNP [dm6]	A	C	1.285e^-5	0.894	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5268217	2R_5268217_SNP [dm3] 2R_9380712_SNP [dm6]	A	C	1.289e^-5	0.894	INTRON CG13954
2L	9731153	2L_9731153_SNP [dm3] 2L_9731153_SNP [dm6]	T	G	1.299e^-5	0.894	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14978400	3L_14978400_SNP [dm3] 3L_14985300_SNP [dm6]	A	T	1.313e^-5	0.894	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	18486446	2R_18486446_SNP [dm3] 2R_22598941_SNP [dm6]	A	T	1.337e^-5	0.894	UPSTREAM CG4269 INTRON CG4269
2L	20488836	2L_20488836_SNP [dm3] 2L_20488836_SNP [dm6]	G	T	1.343e^-5	0.894	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	4467003	X_4467003_INS [dm3] X_4572970_INS [dm6]	A	AAACACA	1.375e^-5	0.894	INTRON CR32773
X	4467007	X_4467007_SNP [dm3] X_4572974_SNP [dm6]	A	G	1.375e^-5	0.894	INTRON CR32773
2L	14530734	2L_14530734_SNP [dm3] 2L_14530734_SNP [dm6]	T	G	1.408e^-5	0.894	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14900306	2L_14900306_DEL [dm3] 2L_14900306_DEL [dm6]	AA	A	1.456e^-5	0.894	INTERGENIC
2R	12470586	2R_12470586_SNP [dm3] 2R_16583081_SNP [dm6]	C	T	1.504e^-5	0.894	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6838314	3L_6838314_SNP [dm3] 3L_6845214_SNP [dm6]	A	G	1.551e^-5	0.894	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1724626	2L_1724626_SNP [dm3] 2L_1724626_SNP [dm6]	C	T	1.575e^-5	0.894	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1724618	2L_1724618_SNP [dm3] 2L_1724618_SNP [dm6]	C	T	1.582e^-5	0.894	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	11103317	X_11103317_SNP [dm3] X_11209284_SNP [dm6]	T	C	1.779e^-5	0.894	INTERGENIC
2L	7005276	2L_7005276_DEL [dm3] 2L_7005276_DEL [dm6]	CCTGCAAGGAATGATGGCAC...	GTAAATA	1.797e^-5	0.894	INTRON uif
2L	7005429	2L_7005429_SNP [dm3] 2L_7005429_SNP [dm6]	A	T	1.840e^-5	0.894	INTRON uif
3R	11028843	3R_11028843_SNP [dm3] 3R_15203121_SNP [dm6]	C	T	1.851e^-5	0.894	UTR_3_PRIME Spn88Ea DOWNSTREAM CG42542	TF binding site mE1_TFBS_cad
2L	13416092	2L_13416092_SNP [dm3] 2L_13416092_SNP [dm6]	A	C	1.858e^-5	0.894	INTRON CG43850 & 1 other
X	2532640	X_2532640_DEL [dm3] X_2638607_DEL [dm6]	GG	G	1.885e^-5	0.894	INTRON sgg	TF binding site BDTNP1_TFBS_dl
2L	4803086	2L_4803086_SNP [dm3] 2L_4803086_SNP [dm6]	A	G	1.919e^-5	0.894	INTERGENIC
2L	3158308	2L_3158308_SNP [dm3] 2L_3158308_SNP [dm6]	T	A	1.933e^-5	0.894	INTRON Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2R	16482705	2R_16482705_SNP [dm3] 2R_20595200_SNP [dm6]	G	A	1.999e^-5	0.894	INTRON bl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14680256	2R_14680256_SNP [dm3] 2R_18792751_SNP [dm6]	T	C	2.056e^-5	0.894	SYNONYMOUS_CODING CG15080	TF binding site mE1_TFBS_cad
2R	10814069	2R_10814069_SNP [dm3] 2R_14926564_SNP [dm6]	T	C	2.067e^-5	0.894	UTR_5_PRIME CG10249	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10621287	2R_10621287_SNP [dm3] 2R_14733782_SNP [dm6]	T	G	2.163e^-5	0.907	INTERGENIC
2R	15409784	2R_15409784_SNP [dm3] 2R_19522279_SNP [dm6]	C	T	2.327e^-5	0.907	UTR_3_PRIME sm
2L	5006057	2L_5006057_SNP [dm3] 2L_5006057_SNP [dm6]	T	A	2.359e^-5	0.907	INTRON Rtnl1
2L	16266046	2L_16266046_SNP [dm3] 2L_16266046_SNP [dm6]	T	C	2.455e^-5	0.907	SYNONYMOUS_CODING crp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	14506237	3L_14506237_SNP [dm3] 3L_14513137_SNP [dm6]	G	A	2.506e^-5	0.907	NON_SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_bab1
2L	13416265	2L_13416265_SNP [dm3] 2L_13416265_SNP [dm6]	C	A	2.605e^-5	0.907	INTRON CG43850 & 1 other
2L	20546332	2L_20546332_SNP [dm3] 2L_20546332_SNP [dm6]	T	G	2.611e^-5	0.907	INTERGENIC
3L	3987332	3L_3987332_SNP [dm3] 3L_3987332_SNP [dm6]	T	A	2.622e^-5	0.907	SYNONYMOUS_CODING scrt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9314246	2L_9314246_SNP [dm3] 2L_9314246_SNP [dm6]	G	A	2.781e^-5	0.907	INTERGENIC
3R	25138858	3R_25138858_SNP [dm3] 3R_29313136_SNP [dm6]	T	A	2.796e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	6441914	3L_6441914_SNP [dm3] 3L_6448814_SNP [dm6]	A	C	2.814e^-5	0.907	INTRON CG42747
2L	13209737	2L_13209737_SNP [dm3] 2L_13209737_SNP [dm6]	C	T	2.815e^-5	0.907	SYNONYMOUS_CODING Pect
2L	9314245	2L_9314245_SNP [dm3] 2L_9314245_SNP [dm6]	A	G	2.856e^-5	0.907	INTERGENIC
2R	15410066	2R_15410066_SNP [dm3] 2R_19522561_SNP [dm6]	T	G	2.893e^-5	0.907	UTR_3_PRIME sm
2R	15385928	2R_15385928_SNP [dm3] 2R_19498423_SNP [dm6]	T	G	2.955e^-5	0.907	INTRON CG15120	TF binding site mE1_TFBS_cad
X	4444716	X_4444716_SNP [dm3] X_4550683_SNP [dm6]	G	C	3.157e^-5	0.907	SYNONYMOUS_CODING CG11436 DOWNSTREAM CG15912 INTRON CR32773	TF binding site mE1_TFBS_sens
X	9686809	X_9686809_SNP [dm3] X_9792776_SNP [dm6]	T	C	3.322e^-5	0.907	INTRON CG32698
3L	11886013	3L_11886013_SNP [dm3] 3L_11892913_SNP [dm6]	G	T	3.333e^-5	0.907	INTRON CG44837
2L	11088403	2L_11088403_SNP [dm3] 2L_11088403_SNP [dm6]	A	G	3.454e^-5	0.907	SYNONYMOUS_CODING CG16854
2R	3418130	2R_3418130_SNP [dm3] 2R_7530625_SNP [dm6]	G	A	3.488e^-5	0.907	UTR_5_PRIME Drat INTRON Drat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	18483976	3L_18483976_SNP [dm3] 3L_18490876_SNP [dm6]	C	A	3.566e^-5	0.907	INTRON AstC-R2
X	9686815	X_9686815_SNP [dm3] X_9792782_SNP [dm6]	T	G	3.611e^-5	0.907	INTRON CG32698
2R	15409776	2R_15409776_SNP [dm3] 2R_19522271_SNP [dm6]	C	T	3.698e^-5	0.907	UTR_3_PRIME sm
3L	2830210	3L_2830210_SNP [dm3] 3L_2830210_SNP [dm6]	G	A	3.806e^-5	0.907	INTRON CG43444
3R	21229670	3R_21229670_SNP [dm3] 3R_25403948_SNP [dm6]	T	C	3.868e^-5	0.907	INTRON Fur1
3L	14059798	3L_14059798_SNP [dm3] 3L_14066698_SNP [dm6]	G	A	3.984e^-5	0.907	SYNONYMOUS_CODING CG32138	TF binding site mE1_TFBS_cad
2L	1724693	2L_1724693_DEL [dm3] 2L_1724693_DEL [dm6]	GCCT	AG	4.094e^-5	0.907	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17372222	2R_17372222_SNP [dm3] 2R_21484717_SNP [dm6]	T	C	4.100e^-5	0.907	SPLICE_SITE_REGION Sara INTRON Sara	TF binding site mE1_TFBS_cad
2R	16872782	2R_16872782_SNP [dm3] 2R_20985277_SNP [dm6]	A	G	4.118e^-5	0.907	INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9686974	X_9686974_SNP [dm3] X_9792941_SNP [dm6]	C	T	4.173e^-5	0.907	INTRON CG32698
3L	2830232	3L_2830232_SNP [dm3] 3L_2830232_SNP [dm6]	T	A	4.191e^-5	0.907	INTRON CG43444
2L	4804254	2L_4804254_SNP [dm3] 2L_4804254_SNP [dm6]	C	A	4.236e^-5	0.907	INTERGENIC
2L	12244720	2L_12244720_SNP [dm3] 2L_12244720_SNP [dm6]	G	T	4.267e^-5	0.907	INTRON aret
2R	11622961	2R_11622961_SNP [dm3] 2R_15735456_SNP [dm6]	T	C	4.298e^-5	0.907	SYNONYMOUS_CODING CG30089 UPSTREAM CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	12839203	2L_12839203_SNP [dm3] 2L_12839203_SNP [dm6]	C	A	4.417e^-5	0.907	INTERGENIC
2L	12839428	2L_12839428_SNP [dm3] 2L_12839428_SNP [dm6]	C	T	4.423e^-5	0.907	INTERGENIC
3L	10032835	3L_10032835_SNP [dm3] 3L_10039735_SNP [dm6]	A	G	4.513e^-5	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	5552011	X_5552011_SNP [dm3] X_5657978_SNP [dm6]	C	T	4.555e^-5	0.907	INTRON CG42265
2R	7271177	2R_7271177_SNP [dm3] 2R_11383672_SNP [dm6]	G	A	4.561e^-5	0.907	INTRON Sod3	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4828593	3L_4828593_SNP [dm3] 3L_4828593_SNP [dm6]	T	C	4.707e^-5	0.907	SYNONYMOUS_CODING Aats-leu DOWNSTREAM CG13708
3L	10032609	3L_10032609_SNP [dm3] 3L_10039509_SNP [dm6]	T	A	4.781e^-5	0.907	INTRON dpr6
3L	10033386	3L_10033386_INS [dm3] 3L_10040286_INS [dm6]	T	TTCAGC	4.781e^-5	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	10033388	3L_10033388_INS [dm3] 3L_10040288_INS [dm6]	T	TTCA	4.781e^-5	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2L	4804253	2L_4804253_SNP [dm3] 2L_4804253_SNP [dm6]	T	C	4.817e^-5	0.907	INTERGENIC
3L	18064306	3L_18064306_SNP [dm3] 3L_18071206_SNP [dm6]	T	C	4.858e^-5	0.907	SYNONYMOUS_CODING CG44005
2R	10013673	2R_10013673_SNP [dm3] 2R_14126168_SNP [dm6]	C	T	4.888e^-5	0.907	INTRON Prosap
3L	2802783	3L_2802783_SNP [dm3] 3L_2802783_SNP [dm6]	C	T	4.917e^-5	0.907	INTRON CG43444
2L	14531019	2L_14531019_SNP [dm3] 2L_14531019_SNP [dm6]	A	G	4.947e^-5	0.907	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	4325119	X_4325119_SNP [dm3] X_4431086_SNP [dm6]	G	C	5.051e^-5	0.907	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3L	7728688	3L_7728688_SNP [dm3] 3L_7735588_SNP [dm6]	T	G	5.257e^-5	0.907	INTRON CG32373 & 1 other
2R	16244182	2R_16244182_SNP [dm3] 2R_20356677_SNP [dm6]	C	T	5.347e^-5	0.907	INTERGENIC
X	11103358	X_11103358_SNP [dm3] X_11209325_SNP [dm6]	G	A	5.364e^-5	0.907	INTERGENIC
2R	10889822	2R_10889822_INS [dm3] 2R_15002317_INS [dm6]	T	TAGCT	5.473e^-5	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	7231617	2R_7231617_SNP [dm3] 2R_11344112_SNP [dm6]	A	G	5.539e^-5	0.907	DOWNSTREAM alphaTry INTERGENIC
2R	7231635	2R_7231635_SNP [dm3] 2R_11344130_SNP [dm6]	T	A	5.539e^-5	0.907	DOWNSTREAM alphaTry INTERGENIC
2R	7231637	2R_7231637_SNP [dm3] 2R_11344132_SNP [dm6]	C	T	5.539e^-5	0.907	DOWNSTREAM alphaTry INTERGENIC
2R	7231639	2R_7231639_SNP [dm3] 2R_11344134_SNP [dm6]	A	T	5.539e^-5	0.907	DOWNSTREAM alphaTry INTERGENIC
2R	7231649	2R_7231649_SNP [dm3] 2R_11344144_SNP [dm6]	C	G	5.539e^-5	0.907	DOWNSTREAM alphaTry INTERGENIC
X	20019535	X_20019535_SNP [dm3] X_20125502_SNP [dm6]	A	G	5.604e^-5	0.907	DOWNSTREAM CG34331 INTERGENIC
2L	12839360	2L_12839360_SNP [dm3] 2L_12839360_SNP [dm6]	A	C	5.651e^-5	0.907	INTERGENIC
3L	8466731	3L_8466731_SNP [dm3] 3L_8473631_SNP [dm6]	T	A	5.654e^-5	0.907	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8978969	3L_8978969_SNP [dm3] 3L_8985869_SNP [dm6]	C	T	5.728e^-5	0.907	UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Ubx
X	21100640	X_21100640_SNP [dm3] X_21229613_SNP [dm6]	G	A	6.013e^-5	0.907	INTRON CG32521
2R	10751668	2R_10751668_SNP [dm3] 2R_14864163_SNP [dm6]	A	C	6.151e^-5	0.907	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1013353	3L_1013353_SNP [dm3] 3L_1013353_SNP [dm6]	C	A	6.171e^-5	0.907	INTRON trio
3L	13097095	3L_13097095_SNP [dm3] 3L_13103995_SNP [dm6]	C	G	6.185e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	12795215	3R_12795215_SNP [dm3] 3R_16969493_SNP [dm6]	A	T	6.195e^-5	0.907	INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad
2L	20825567	2L_20825567_SNP [dm3] 2L_20825567_SNP [dm6]	T	C	6.277e^-5	0.907	UTR_5_PRIME CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1318185	X_1318185_SNP [dm3] X_1424152_SNP [dm6]	G	A	6.320e^-5	0.907	INTRON futsch	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14528538	2L_14528538_SNP [dm3] 2L_14528538_SNP [dm6]	A	T	6.383e^-5	0.907	INTERGENIC
2R	15835003	2R_15835003_SNP [dm3] 2R_19947498_SNP [dm6]	A	G	6.389e^-5	0.907	NON_SYNONYMOUS_CODING CG30447 UPSTREAM CG42691
X	15559126	X_15559126_DEL [dm3] X_15665093_DEL [dm6]	TAT	G	6.403e^-5	0.907	INTRON CR43299 EXON CR43299
X	15559135	X_15559135_DEL [dm3] X_15665102_DEL [dm6]	AG	A	6.403e^-5	0.907	INTRON CR43299 EXON CR43299
X	14808552	X_14808552_SNP [dm3] X_14914519_SNP [dm6]	G	A	6.463e^-5	0.907	UPSTREAM CG12398 INTRON Flo2
2L	16390693	2L_16390693_SNP [dm3] 2L_16390693_SNP [dm6]	C	A	6.480e^-5	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9959365	3L_9959365_SNP [dm3] 3L_9966265_SNP [dm6]	G	C	6.480e^-5	0.907	UTR_3_PRIME CG34356 DOWNSTREAM CG6685 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2R	5239327	2R_5239327_SNP [dm3] 2R_9351822_SNP [dm6]	T	G	6.487e^-5	0.907	UPSTREAM CG13739 INTRON CG13954	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7143199	3L_7143199_SNP [dm3] 3L_7150099_SNP [dm6]	C	A	6.552e^-5	0.907	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	17027611	2R_17027611_SNP [dm3] 2R_21140106_SNP [dm6]	A	G	6.608e^-5	0.907	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17525170	3L_17525170_SNP [dm3] 3L_17532070_SNP [dm6]	A	G	6.744e^-5	0.907	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl
X	8665975	X_8665975_SNP [dm3] X_8771942_SNP [dm6]	T	G	6.811e^-5	0.907	INTRON Lim1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	13770530	2R_13770530_SNP [dm3] 2R_17883025_SNP [dm6]	C	G	6.861e^-5	0.907	UPSTREAM CG30110 INTRON Elk
2L	12839308	2L_12839308_SNP [dm3] 2L_12839308_SNP [dm6]	A	C	6.899e^-5	0.907	INTERGENIC
3L	11133770	3L_11133770_SNP [dm3] 3L_11140670_SNP [dm6]	A	T	6.925e^-5	0.907	INTRON CG32082
3L	3775747	3L_3775747_DEL [dm3] 3L_3775747_DEL [dm6]	TTTATTTTCTT...	T	7.070e^-5	0.907	INTRON CG32264
X	21084209	X_21084209_INS [dm3] X_21213182_INS [dm6]	T	TT	7.088e^-5	0.907	INTRON CG32521
2L	14183374	2L_14183374_SNP [dm3] 2L_14183374_SNP [dm6]	C	A	7.178e^-5	0.907	INTERGENIC
2L	14530935	2L_14530935_SNP [dm3] 2L_14530935_SNP [dm6]	C	T	7.202e^-5	0.907	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10310173	X_10310173_SNP [dm3] X_10416140_SNP [dm6]	A	G	7.206e^-5	0.907	INTRON CG32683
2L	9313808	2L_9313808_SNP [dm3] 2L_9313808_SNP [dm6]	C	A	7.300e^-5	0.907	INTERGENIC
2L	19625574	2L_19625574_SNP [dm3] 2L_19625574_SNP [dm6]	A	C	7.348e^-5	0.907	INTRON Lar
X	3802728	X_3802728_SNP [dm3] X_3908695_SNP [dm6]	T	C	7.381e^-5	0.907	INTRON CG42541
2L	10036879	2L_10036879_SNP [dm3] 2L_10036879_SNP [dm6]	T	C	7.385e^-5	0.907	SYNONYMOUS_CODING obst-B
2R	11639859	2R_11639859_SNP [dm3] 2R_15752354_SNP [dm6]	C	G	7.399e^-5	0.907	INTRON CG30089
2R	20179296	2R_20179296_DEL [dm3] 2R_24291773_DEL [dm6]	GG	G	7.411e^-5	0.907	DOWNSTREAM nvy INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	3016480	2L_3016480_SNP [dm3] 2L_3016480_SNP [dm6]	T	C	7.469e^-5	0.907	UTR_3_PRIME CG17224 DOWNSTREAM CG17224 & 1 other
2R	6894426	2R_6894426_SNP [dm3] 2R_11006921_SNP [dm6]	C	T	7.521e^-5	0.907	INTRON luna
3L	7625186	3L_7625186_SNP [dm3] 3L_7632086_SNP [dm6]	G	T	7.570e^-5	0.907	INTRON CG33275	TF binding site mE1_TFBS_sbb
2L	3042190	2L_3042190_SNP [dm3] 2L_3042190_SNP [dm6]	G	C	7.690e^-5	0.907	UPSTREAM CG17261 DOWNSTREAM CG17221 INTERGENIC
3L	7625161	3L_7625161_SNP [dm3] 3L_7632061_SNP [dm6]	C	T	7.930e^-5	0.907	INTRON CG33275
3L	8447404	3L_8447404_DEL [dm3] 3L_8454304_DEL [dm6]	TT	T	7.993e^-5	0.907	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18872120	3R_18872120_SNP [dm3] 3R_23046398_SNP [dm6]	A	C	7.994e^-5	0.907	INTRON CG17121
3L	5076167	3L_5076167_SNP [dm3] 3L_5076167_SNP [dm6]	G	T	8.083e^-5	0.907	INTRON Con
X	18415333	X_18415333_SNP [dm3] X_18521300_SNP [dm6]	G	C	8.112e^-5	0.907	UTR_3_PRIME CG6481 DOWNSTREAM Aats-his INTRON Bx
3L	8573978	3L_8573978_SNP [dm3] 3L_8580878_SNP [dm6]	A	G	8.123e^-5	0.907	INTRON CG43078
3L	7625094	3L_7625094_SNP [dm3] 3L_7631994_SNP [dm6]	G	T	8.260e^-5	0.907	INTRON CG33275
3L	7625173	3L_7625173_SNP [dm3] 3L_7632073_SNP [dm6]	G	T	8.260e^-5	0.907	INTRON CG33275	TF binding site mE1_TFBS_sbb
2R	16436597	2R_16436597_SNP [dm3] 2R_20549092_SNP [dm6]	C	T	8.299e^-5	0.907	NON_SYNONYMOUS_CODING Obp57d UTR_3_PRIME Cpr57A UPSTREAM Obp57e DOWNSTREAM Cpr57A	regulatory region REDfly_CRMs
2R	17027836	2R_17027836_SNP [dm3] 2R_21140331_SNP [dm6]	C	G	8.384e^-5	0.907	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9262064	2R_9262064_MNP [dm3] 2R_13374559_MNP [dm6]	TTT	CAA	8.468e^-5	0.907	INTERGENIC
3L	8850726	3L_8850726_SNP [dm3] 3L_8857626_SNP [dm6]	A	G	8.650e^-5	0.907	INTRON dally
2R	17397368	2R_17397368_SNP [dm3] 2R_21509863_SNP [dm6]	A	T	8.698e^-5	0.907	INTRON MESK2
X	20019499	X_20019499_SNP [dm3] X_20125466_SNP [dm6]	T	A	8.727e^-5	0.907	DOWNSTREAM CG34331 INTERGENIC
X	16289991	X_16289991_SNP [dm3] X_16395958_SNP [dm6]	T	A	8.797e^-5	0.907	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
2R	6894428	2R_6894428_SNP [dm3] 2R_11006923_SNP [dm6]	C	G	8.872e^-5	0.907	INTRON luna
2L	12839376	2L_12839376_SNP [dm3] 2L_12839376_SNP [dm6]	A	T	8.894e^-5	0.907	INTERGENIC
2L	1177222	2L_1177222_SNP [dm3] 2L_1177222_SNP [dm6]	A	G	8.928e^-5	0.907	UPSTREAM CG4896 INTRON CG4887	TF binding site BDTNP1_TFBS_dl
2L	7005610	2L_7005610_SNP [dm3] 2L_7005610_SNP [dm6]	C	A	9.000e^-5	0.907	INTRON uif
2R	19397246	2R_19397246_SNP [dm3] 2R_23509723_SNP [dm6]	C	T	9.083e^-5	0.907	INTERGENIC
3R	22519887	3R_22519887_SNP [dm3] 3R_26694165_SNP [dm6]	C	T	9.190e^-5	0.907	UPSTREAM TwdlQ INTERGENIC
3R	22519893	3R_22519893_SNP [dm3] 3R_26694171_SNP [dm6]	G	A	9.272e^-5	0.907	UPSTREAM TwdlQ INTERGENIC
2R	16244296	2R_16244296_SNP [dm3] 2R_20356791_SNP [dm6]	C	G	9.283e^-5	0.907	INTERGENIC
3L	7728680	3L_7728680_SNP [dm3] 3L_7735580_SNP [dm6]	G	A	9.305e^-5	0.907	INTRON CG32373 & 1 other
2R	10003134	2R_10003134_SNP [dm3] 2R_14115629_SNP [dm6]	C	T	9.370e^-5	0.907	INTRON Prosap
3R	20027300	3R_20027300_SNP [dm3] 3R_24201578_SNP [dm6]	T	C	9.432e^-5	0.907	UPSTREAM twin INTRON twin
2R	10552733	2R_10552733_SNP [dm3] 2R_14665228_SNP [dm6]	C	G	9.523e^-5	0.907	SYNONYMOUS_CODING CG12861 DOWNSTREAM CG12860
X	6580016	X_6580016_SNP [dm3] X_6685983_SNP [dm6]	C	T	9.535e^-5	0.907	SYNONYMOUS_CODING Pink1 DOWNSTREAM CG44303	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3852287	3L_3852287_DEL [dm3] 3L_3852287_DEL [dm6]	TT	T	9.547e^-5	0.907	INTRON Awh
2L	20612482	2L_20612482_SNP [dm3] 2L_20612482_SNP [dm6]	T	A	9.598e^-5	0.907	INTRON CR44909
3L	2802896	3L_2802896_SNP [dm3] 3L_2802896_SNP [dm6]	A	C	9.647e^-5	0.907	INTRON CG43444
2L	1949101	2L_1949101_SNP [dm3] 2L_1949101_SNP [dm6]	G	A	9.887e^-5	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	14978367	3L_14978367_SNP [dm3] 3L_14985267_SNP [dm6]	T	C	9.926e^-5	0.907	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_Kr
3L	2830233	3L_2830233_SNP [dm3] 3L_2830233_SNP [dm6]	T	C	9.979e^-5	0.907	INTRON CG43444
3R	13302876	3R_13302876_SNP [dm3] 3R_17477154_SNP [dm6]	A	C	1.002e^-4	0.907	INTRON Dscam3
3L	10030817	3L_10030817_SNP [dm3] 3L_10037717_SNP [dm6]	G	A	1.008e^-4	0.907	INTRON dpr6
3L	18064407	3L_18064407_INS [dm3] 3L_18071307_INS [dm6]	A	GTTTAAGTT	1.013e^-4	0.907	INTRON CG44005
X	9688311	X_9688311_SNP [dm3] X_9794278_SNP [dm6]	G	A	1.014e^-4	0.907	UPSTREAM CG32698 INTRON CG32698
2R	6822174	2R_6822174_SNP [dm3] 2R_10934669_SNP [dm6]	C	T	1.016e^-4	0.907	INTERGENIC
3L	6836149	3L_6836149_SNP [dm3] 3L_6843049_SNP [dm6]	A	G	1.019e^-4	0.907	INTERGENIC
2R	6822177	2R_6822177_SNP [dm3] 2R_10934672_SNP [dm6]	T	C	1.020e^-4	0.907	INTERGENIC
2R	16720562	2R_16720562_SNP [dm3] 2R_20833057_SNP [dm6]	G	A	1.024e^-4	0.907	UPSTREAM sktl INTRON insc & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	10315657	2L_10315657_SNP [dm3] 2L_10315657_SNP [dm6]	C	T	1.027e^-4	0.907	SYNONYMOUS_CODING CG4972	TF binding site mE1_TFBS_sens
2L	13415871	2L_13415871_SNP [dm3] 2L_13415871_SNP [dm6]	C	A	1.033e^-4	0.907	INTRON CG43850 & 1 other
X	20672662	X_20672662_SNP [dm3] X_20801635_SNP [dm6]	A	G	1.035e^-4	0.907	INTRON shakB
2R	16643557	2R_16643557_SNP [dm3] 2R_20756052_SNP [dm6]	C	T	1.043e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2R	3070529	2R_3070529_SNP [dm3] 2R_7183024_SNP [dm6]	T	A	1.046e^-4	0.907	UTR_5_PRIME CG30384 DOWNSTREAM CG30385 INTRON pk
3L	4942268	3L_4942268_SNP [dm3] 3L_4942268_SNP [dm6]	C	A	1.052e^-4	0.907	INTRON Con
2L	2747256	2L_2747256_SNP [dm3] 2L_2747256_SNP [dm6]	A	G	1.055e^-4	0.907	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10145962	2L_10145962_SNP [dm3] 2L_10145962_SNP [dm6]	A	G	1.056e^-4	0.907	UTR_5_PRIME CG4839 INTRON CG44153 & 1 other
X	8284362	X_8284362_SNP [dm3] X_8390329_SNP [dm6]	A	G	1.057e^-4	0.907	DOWNSTREAM CG1387 INTERGENIC
2L	4803895	2L_4803895_SNP [dm3] 2L_4803895_SNP [dm6]	T	G	1.069e^-4	0.907	INTERGENIC
2R	13729154	2R_13729154_SNP [dm3] 2R_17841649_SNP [dm6]	G	T	1.083e^-4	0.907	UTR_3_PRIME grh DOWNSTREAM grh
X	4444743	X_4444743_SNP [dm3] X_4550710_SNP [dm6]	T	C	1.096e^-4	0.907	SYNONYMOUS_CODING CG11436 DOWNSTREAM CG15912 INTRON CR32773	TF binding site mE1_TFBS_sens
3L	7728150	3L_7728150_SNP [dm3] 3L_7735050_SNP [dm6]	G	C	1.098e^-4	0.907	INTRON CG32373 & 1 other
3L	11746272	3L_11746272_SNP [dm3] 3L_11753172_SNP [dm6]	G	A	1.104e^-4	0.907	DOWNSTREAM Gr68a INTRON CG6024
3R	26978076	3R_26978076_INS [dm3] 3R_31152354_INS [dm6]	T	TA	1.107e^-4	0.907	INTRON Gycbeta100B
2R	5268010	2R_5268010_SNP [dm3] 2R_9380505_SNP [dm6]	T	A	1.112e^-4	0.907	INTRON CG13954
2L	9915902	2L_9915902_SNP [dm3] 2L_9915902_SNP [dm6]	C	T	1.118e^-4	0.907	DOWNSTREAM Srp54 INTRON yip2
3R	13691894	3R_13691894_SNP [dm3] 3R_17866172_SNP [dm6]	C	T	1.119e^-4	0.907	SYNONYMOUS_CODING tinc
2L	20824343	2L_20824343_INS [dm3] 2L_20824343_INS [dm6]	A	AC	1.129e^-4	0.907	UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl
2L	19310992	2L_19310992_SNP [dm3] 2L_19310992_SNP [dm6]	T	G	1.138e^-4	0.907	INTERGENIC
3R	25700668	3R_25700668_SNP [dm3] 3R_29874946_SNP [dm6]	T	C	1.138e^-4	0.907	UTR_3_PRIME CG34133 DOWNSTREAM CG34133
2R	4414027	2R_4414027_SNP [dm3] 2R_8526522_SNP [dm6]	T	G	1.141e^-4	0.907	INTRON mtt	TF binding site mE1_TFBS_inv
3L	5427559	3L_5427559_SNP [dm3] 3L_5434459_SNP [dm6]	A	G	1.146e^-4	0.907	INTRON CG34391
3L	14978385	3L_14978385_SNP [dm3] 3L_14985285_SNP [dm6]	A	T	1.149e^-4	0.907	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	16687153	2L_16687153_SNP [dm3] 2L_16687153_SNP [dm6]	C	G	1.152e^-4	0.907	INTRON grp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8080031	X_8080031_SNP [dm3] X_8185998_SNP [dm6]	G	A	1.152e^-4	0.907	INTRON sdt
2R	10013792	2R_10013792_SNP [dm3] 2R_14126287_SNP [dm6]	C	T	1.156e^-4	0.907	INTRON Prosap
2L	8412422	2L_8412422_SNP [dm3] 2L_8412422_SNP [dm6]	G	A	1.158e^-4	0.907	UTR_3_PRIME CG13398 UPSTREAM CG13397
3L	6066098	3L_6066098_SNP [dm3] 3L_6072998_SNP [dm6]	A	G	1.179e^-4	0.907	SYNONYMOUS_CODING CG6602 DOWNSTREAM CG13295
2R	6220287	2R_6220287_SNP [dm3] 2R_10332782_SNP [dm6]	G	C	1.179e^-4	0.907	INTRON CG42732
2R	13027180	2R_13027180_SNP [dm3] 2R_17139675_SNP [dm6]	G	T	1.182e^-4	0.907	SYNONYMOUS_CODING CG43103 UPSTREAM CR44386 DOWNSTREAM CG11395 & 1 other
X	9688125	X_9688125_SNP [dm3] X_9794092_SNP [dm6]	A	T	1.187e^-4	0.907	UPSTREAM CG32698 INTRON CG32698
2R	13905054	2R_13905054_SNP [dm3] 2R_18017549_SNP [dm6]	A	G	1.191e^-4	0.907	INTERGENIC
2L	4078809	2L_4078809_SNP [dm3] 2L_4078809_SNP [dm6]	T	A	1.195e^-4	0.907	INTRON ed
3L	3453934	3L_3453934_SNP [dm3] 3L_3453934_SNP [dm6]	C	T	1.199e^-4	0.907	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	875539	3L_875539_SNP [dm3] 3L_875539_SNP [dm6]	G	T	1.200e^-4	0.907	INTRON CG32479
X	21161634	X_21161634_SNP [dm3] X_21290607_SNP [dm6]	T	C	1.202e^-4	0.907	SYNONYMOUS_CODING CG1494
X	9688373	X_9688373_SNP [dm3] X_9794340_SNP [dm6]	G	T	1.204e^-4	0.907	UPSTREAM CG32698 INTRON CG32698
3R	25697128	3R_25697128_DEL [dm3] 3R_29871406_DEL [dm6]	ACATAG	A	1.207e^-4	0.907	INTRON CG34133	TF binding site mE1_TFBS_cad
X	21274532	X_21274532_DEL [dm3] X_21403505_DEL [dm6]	GCAACACGA	G	1.247e^-4	0.907	UPSTREAM CG1678 INTERGENIC
X	21274542	X_21274542_SNP [dm3] X_21403515_SNP [dm6]	C	T	1.247e^-4	0.907	UPSTREAM CG1678 INTERGENIC
2L	10097489	2L_10097489_SNP [dm3] 2L_10097489_SNP [dm6]	T	C	1.250e^-4	0.907	INTRON CG34109 & 1 other
2L	2748951	2L_2748951_SNP [dm3] 2L_2748951_SNP [dm6]	T	G	1.266e^-4	0.907	UPSTREAM Pgk INTRON Pgk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5051121	X_5051121_SNP [dm3] X_5157088_SNP [dm6]	A	T	1.275e^-4	0.907	INTRON rg & 1 other
2R	10013808	2R_10013808_SNP [dm3] 2R_14126303_SNP [dm6]	A	T	1.281e^-4	0.907	INTRON Prosap
X	3802741	X_3802741_SNP [dm3] X_3908708_SNP [dm6]	G	C	1.284e^-4	0.907	INTRON CG42541
2R	10013306	2R_10013306_SNP [dm3] 2R_14125801_SNP [dm6]	T	A	1.285e^-4	0.907	INTRON Prosap
X	6901162	X_6901162_SNP [dm3] X_7007129_SNP [dm6]	T	C	1.285e^-4	0.907	INTRON Inx7
3R	3051099	3R_3051099_SNP [dm3] 3R_7225377_SNP [dm6]	C	T	1.294e^-4	0.907	INTRON CG14608
3R	13691887	3R_13691887_SNP [dm3] 3R_17866165_SNP [dm6]	G	A	1.305e^-4	0.907	SYNONYMOUS_CODING tinc
2L	2977859	2L_2977859_SNP [dm3] 2L_2977859_SNP [dm6]	C	G	1.328e^-4	0.907	NON_SYNONYMOUS_CODING CG3165 UPSTREAM CG9641 DOWNSTREAM CG9643	TF binding site mE1_TFBS_sens
2R	19397251	2R_19397251_SNP [dm3] 2R_23509728_SNP [dm6]	T	A	1.328e^-4	0.907	INTERGENIC
2L	9313799	2L_9313799_SNP [dm3] 2L_9313799_SNP [dm6]	C	A	1.332e^-4	0.907	INTERGENIC
2L	2842918	2L_2842918_SNP [dm3] 2L_2842918_SNP [dm6]	C	T	1.333e^-4	0.907	NON_SYNONYMOUS_CODING CG18558 DOWNSTREAM CG2975
2L	11291320	2L_11291320_SNP [dm3] 2L_11291320_SNP [dm6]	A	G	1.341e^-4	0.907	UPSTREAM CR43409 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7246186	2L_7246186_SNP [dm3] 2L_7246186_SNP [dm6]	A	G	1.374e^-4	0.907	UPSTREAM Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3017387	2L_3017387_SNP [dm3] 2L_3017387_SNP [dm6]	C	T	1.380e^-4	0.907	SYNONYMOUS_CODING CG17224	TF binding site mE1_TFBS_chinmo
2L	10097495	2L_10097495_DEL [dm3] 2L_10097495_DEL [dm6]	CCCAC	C	1.382e^-4	0.907	INTRON CG34109 & 1 other
X	9688309	X_9688309_SNP [dm3] X_9794276_SNP [dm6]	G	C	1.388e^-4	0.907	UPSTREAM CG32698 INTRON CG32698
2L	4926030	2L_4926030_SNP [dm3] 2L_4926030_SNP [dm6]	T	G	1.388e^-4	0.907	UTR_5_PRIME hoe1 INTRON hoe1
2R	18894172	2R_18894172_INS [dm3] 2R_23006649_INS [dm6]	T	TCT	1.390e^-4	0.907	INTRON twi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	12683856	3L_12683856_SNP [dm3] 3L_12690756_SNP [dm6]	G	A	1.397e^-4	0.907	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14900067	2L_14900067_SNP [dm3] 2L_14900067_SNP [dm6]	C	A	1.417e^-4	0.907	INTERGENIC
2L	11022970	2L_11022970_SNP [dm3] 2L_11022970_SNP [dm6]	C	T	1.428e^-4	0.907	INTRON Samuel
2L	14597367	2L_14597367_SNP [dm3] 2L_14597367_SNP [dm6]	G	A	1.440e^-4	0.907	INTERGENIC
3R	2619766	3R_2619766_SNP [dm3] 3R_6794044_SNP [dm6]	T	C	1.463e^-4	0.907	INTRON Dfd
2R	10013858	2R_10013858_SNP [dm3] 2R_14126353_SNP [dm6]	G	A	1.464e^-4	0.907	INTRON Prosap
2R	10013881	2R_10013881_SNP [dm3] 2R_14126376_SNP [dm6]	C	T	1.464e^-4	0.907	INTRON Prosap
2L	3678004	2L_3678004_SNP [dm3] 2L_3678004_SNP [dm6]	T	C	1.466e^-4	0.907	INTRON CG34340
2L	21064587	2L_21064587_SNP [dm3] 2L_21064587_SNP [dm6]	T	A	1.473e^-4	0.907	INTRON CG9265	TF binding site mE1_TFBS_cnc
2L	21064654	2L_21064654_SNP [dm3] 2L_21064654_SNP [dm6]	C	T	1.473e^-4	0.907	INTRON CG9265	TF binding site mE1_TFBS_cnc
X	8274361	X_8274361_SNP [dm3] X_8380328_SNP [dm6]	T	C	1.475e^-4	0.907	INTERGENIC
3L	10872308	3L_10872308_SNP [dm3] 3L_10879208_SNP [dm6]	A	C	1.481e^-4	0.907	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1724727	2L_1724727_SNP [dm3] 2L_1724727_SNP [dm6]	T	G	1.486e^-4	0.907	UPSTREAM Rim2 DOWNSTREAM Eno INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	9520104	2L_9520104_SNP [dm3] 2L_9520104_SNP [dm6]	C	T	1.486e^-4	0.907	UTR_3_PRIME CG33298	TF binding site mE1_TFBS_bab1
2R	9258445	2R_9258445_SNP [dm3] 2R_13370940_SNP [dm6]	C	T	1.500e^-4	0.907	INTERGENIC
X	21083593	X_21083593_SNP [dm3] X_21212566_SNP [dm6]	G	A	1.503e^-4	0.907	INTRON CG32521
3R	20713626	3R_20713626_SNP [dm3] 3R_24887904_SNP [dm6]	G	A	1.520e^-4	0.907	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9425614	2L_9425614_SNP [dm3] 2L_9425614_SNP [dm6]	T	C	1.531e^-4	0.907	SYNONYMOUS_CODING Mco1
2L	18343326	2L_18343326_SNP [dm3] 2L_18343326_SNP [dm6]	G	A	1.532e^-4	0.907	INTRON Fas3
2R	16121101	2R_16121101_SNP [dm3] 2R_20233596_SNP [dm6]	G	A	1.549e^-4	0.907	SYNONYMOUS_CODING CG11044 DOWNSTREAM tRNA:G3:56EFb
2R	14085680	2R_14085680_SNP [dm3] 2R_18198175_SNP [dm6]	C	A	1.549e^-4	0.907	INTERGENIC
2L	1404167	2L_1404167_SNP [dm3] 2L_1404167_SNP [dm6]	C	A	1.560e^-4	0.907	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3L	3453928	3L_3453928_SNP [dm3] 3L_3453928_SNP [dm6]	C	T	1.563e^-4	0.907	INTRON eIF5B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5238453	2R_5238453_SNP [dm3] 2R_9350948_SNP [dm6]	G	A	1.569e^-4	0.907	UTR_5_PRIME CG13739 INTRON CG13954
2L	12912434	2L_12912434_SNP [dm3] 2L_12912434_SNP [dm6]	A	T	1.569e^-4	0.907	UPSTREAM ACXC INTERGENIC
2L	11127508	2L_11127508_SNP [dm3] 2L_11127508_SNP [dm6]	C	T	1.573e^-4	0.907	SYNONYMOUS_CODING Nup160	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19338011	2L_19338011_SNP [dm3] 2L_19338011_SNP [dm6]	A	T	1.574e^-4	0.907	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15350614	X_15350614_SNP [dm3] X_15456581_SNP [dm6]	C	T	1.588e^-4	0.907	SYNONYMOUS_CODING shtd	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	11314106	3L_11314106_SNP [dm3] 3L_11321006_SNP [dm6]	G	T	1.589e^-4	0.907	SYNONYMOUS_CODING CG6168
2R	17801854	2R_17801854_DEL [dm3] 2R_21914349_DEL [dm6]	TCGTGCTTTTCCCCTTGT...	T	1.596e^-4	0.907	INTRON Fili
3L	11143689	3L_11143689_SNP [dm3] 3L_11150589_SNP [dm6]	C	T	1.602e^-4	0.907	NON_SYNONYMOUS_CODING CG6216 INTRON CG32082
X	15559141	X_15559141_SNP [dm3] X_15665108_SNP [dm6]	A	G	1.602e^-4	0.907	INTRON CR43299 EXON CR43299
2R	8729562	2R_8729562_SNP [dm3] 2R_12842057_SNP [dm6]	C	A	1.603e^-4	0.907	SYNONYMOUS_CODING Cyp9h1 UPSTREAM Or49b
2R	16109071	2R_16109071_SNP [dm3] 2R_20221566_SNP [dm6]	A	T	1.604e^-4	0.907	EXON CR45423
2L	14531028	2L_14531028_SNP [dm3] 2L_14531028_SNP [dm6]	C	A	1.604e^-4	0.907	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8363489	3L_8363489_SNP [dm3] 3L_8370389_SNP [dm6]	T	G	1.608e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17423709	2R_17423709_SNP [dm3] 2R_21536204_SNP [dm6]	C	A	1.611e^-4	0.907	UTR_3_PRIME CG30286 DOWNSTREAM CG30287 INTRON Egfr & 1 other	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
3L	4828575	3L_4828575_SNP [dm3] 3L_4828575_SNP [dm6]	G	A	1.614e^-4	0.907	SYNONYMOUS_CODING Aats-leu DOWNSTREAM CG13708
2R	4519557	2R_4519557_SNP [dm3] 2R_8632052_SNP [dm6]	T	A	1.614e^-4	0.907	UPSTREAM CG8635 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14270586	2L_14270586_SNP [dm3] 2L_14270586_SNP [dm6]	T	C	1.615e^-4	0.907	INTRON wb
2R	11981582	2R_11981582_SNP [dm3] 2R_16094077_SNP [dm6]	C	T	1.633e^-4	0.907	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10032789	3L_10032789_SNP [dm3] 3L_10039689_SNP [dm6]	A	G	1.636e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	10032823	3L_10032823_SNP [dm3] 3L_10039723_SNP [dm6]	A	G	1.636e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	10032961	3L_10032961_DEL [dm3] 3L_10039861_DEL [dm6]	ATGTAATTG	A	1.636e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	7153880	X_7153880_SNP [dm3] X_7259847_SNP [dm6]	A	G	1.641e^-4	0.907	INTRON CR44357	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	2867117	2L_2867117_SNP [dm3] 2L_2867117_SNP [dm6]	T	C	1.644e^-4	0.907	SYNONYMOUS_CODING CG2991
3L	9665246	3L_9665246_SNP [dm3] 3L_9672146_SNP [dm6]	G	T	1.651e^-4	0.907	INTRON fry
2L	3016386	2L_3016386_SNP [dm3] 2L_3016386_SNP [dm6]	C	T	1.655e^-4	0.907	DOWNSTREAM CG17224 & 1 other INTERGENIC
2L	13095029	2L_13095029_SNP [dm3] 2L_13095029_SNP [dm6]	C	A	1.656e^-4	0.907	INTERGENIC
3R	11789293	3R_11789293_SNP [dm3] 3R_15963571_SNP [dm6]	G	A	1.673e^-4	0.907	UPSTREAM CG5516 INTRON CG4287	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9285669	X_9285669_SNP [dm3] X_9391636_SNP [dm6]	T	C	1.674e^-4	0.907	INTRON mgl
X	8399938	X_8399938_SNP [dm3] X_8505905_SNP [dm6]	C	T	1.677e^-4	0.907	INTRON CG33181
3L	16460859	3L_16460859_SNP [dm3] 3L_16467759_SNP [dm6]	G	C	1.688e^-4	0.907	INTRON CG33158
2L	1177535	2L_1177535_SNP [dm3] 2L_1177535_SNP [dm6]	A	G	1.688e^-4	0.907	UTR_3_PRIME CG4887 UPSTREAM CG4896 DOWNSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19338010	2L_19338010_SNP [dm3] 2L_19338010_SNP [dm6]	G	T	1.707e^-4	0.907	DOWNSTREAM dnt INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17439278	2R_17439278_SNP [dm3] 2R_21551773_SNP [dm6]	T	C	1.707e^-4	0.907	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	10872881	3L_10872881_SNP [dm3] 3L_10879781_SNP [dm6]	A	T	1.714e^-4	0.907	UTR_3_PRIME Blos4 UPSTREAM CG6418 DOWNSTREAM CG6409	TF binding site mE1_TFBS_HSA
2R	17443246	2R_17443246_SNP [dm3] 2R_21555741_SNP [dm6]	T	A	1.728e^-4	0.907	SYNONYMOUS_CODING Egfr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5314911	3L_5314911_SNP [dm3] 3L_5321811_SNP [dm6]	C	T	1.728e^-4	0.907	INTERGENIC
3L	12683852	3L_12683852_SNP [dm3] 3L_12690752_SNP [dm6]	T	G	1.735e^-4	0.907	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13831293	2R_13831293_SNP [dm3] 2R_17943788_SNP [dm6]	A	C	1.737e^-4	0.907	INTERGENIC
2R	13863420	2R_13863420_SNP [dm3] 2R_17975915_SNP [dm6]	T	G	1.739e^-4	0.907	UTR_3_PRIME dpr13
2L	3156362	2L_3156362_DEL [dm3] 2L_3156362_DEL [dm6]	GG	G	1.743e^-4	0.907	INTRON Mad	TF binding site mE1_TFBS_cad
2L	9425023	2L_9425023_SNP [dm3] 2L_9425023_SNP [dm6]	T	C	1.760e^-4	0.907	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
2L	14329764	2L_14329764_SNP [dm3] 2L_14329764_SNP [dm6]	C	G	1.761e^-4	0.907	SYNONYMOUS_CODING ms_2_34Fe	TF binding site mE1_TFBS_cad
2L	9425935	2L_9425935_SNP [dm3] 2L_9425935_SNP [dm6]	C	A	1.772e^-4	0.907	SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2L	17499246	2L_17499246_SNP [dm3] 2L_17499246_SNP [dm6]	C	G	1.776e^-4	0.907	UPSTREAM CG15142 DOWNSTREAM CG6412 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7726931	3L_7726931_SNP [dm3] 3L_7733831_SNP [dm6]	A	T	1.778e^-4	0.907	INTRON CG32373 & 1 other
X	11407362	X_11407362_SNP [dm3] X_11513329_SNP [dm6]	G	A	1.783e^-4	0.907	INTRON Drak
3L	3930910	3L_3930910_DEL [dm3] 3L_3930910_DEL [dm6]	CC	C	1.794e^-4	0.907	INTRON Eip63F-1
2R	9261962	2R_9261962_SNP [dm3] 2R_13374457_SNP [dm6]	T	A	1.795e^-4	0.907	INTERGENIC
X	2778484	X_2778484_SNP [dm3] X_2884451_SNP [dm6]	A	T	1.800e^-4	0.907	UPSTREAM CG14418 DOWNSTREAM CG14419 INTRON kirre
3L	13081362	3L_13081362_SNP [dm3] 3L_13088262_SNP [dm6]	G	A	1.814e^-4	0.907	UPSTREAM CG17300 DOWNSTREAM CG11251 EXON CR45749	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	18111122	3L_18111122_SNP [dm3] 3L_18118022_SNP [dm6]	C	A	1.815e^-4	0.907	UTR_3_PRIME CG32195 INTRON CG7341
2L	1404161	2L_1404161_SNP [dm3] 2L_1404161_SNP [dm6]	G	A	1.826e^-4	0.907	INTRON lea	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_kn
3L	6247404	3L_6247404_SNP [dm3] 3L_6254304_SNP [dm6]	A	C	1.828e^-4	0.907	INTRON Best2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7004270	3L_7004270_SNP [dm3] 3L_7011170_SNP [dm6]	C	T	1.830e^-4	0.907	INTRON Mp
3L	8978835	3L_8978835_SNP [dm3] 3L_8985735_SNP [dm6]	G	C	1.836e^-4	0.907	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
3L	10988054	3L_10988054_SNP [dm3] 3L_10994954_SNP [dm6]	G	T	1.840e^-4	0.907	INTRON klu
3L	2851056	3L_2851056_SNP [dm3] 3L_2851056_SNP [dm6]	G	A	1.844e^-4	0.907	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	2851139	3L_2851139_SNP [dm3] 3L_2851139_SNP [dm6]	T	C	1.844e^-4	0.907	INTRON CG43444	TF binding site mE1_TFBS_cad
3L	2851174	3L_2851174_SNP [dm3] 3L_2851174_SNP [dm6]	T	A	1.844e^-4	0.907	INTRON CG43444	TF binding site mE1_TFBS_cad
2R	16594146	2R_16594146_SNP [dm3] 2R_20706641_SNP [dm6]	C	G	1.848e^-4	0.907	INTRON dpr
2R	14830584	2R_14830584_SNP [dm3] 2R_18943079_SNP [dm6]	G	A	1.848e^-4	0.907	INTRON sano
2L	9915900	2L_9915900_SNP [dm3] 2L_9915900_SNP [dm6]	T	G	1.855e^-4	0.907	DOWNSTREAM Srp54 INTRON yip2
2L	1177416	2L_1177416_SNP [dm3] 2L_1177416_SNP [dm6]	G	A	1.861e^-4	0.907	UTR_3_PRIME CG4887 UPSTREAM CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1478220	2L_1478220_DEL [dm3] 2L_1478220_DEL [dm6]	TT	T	1.863e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1885857	2L_1885857_SNP [dm3] 2L_1885857_SNP [dm6]	T	G	1.867e^-4	0.907	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9009786	X_9009786_SNP [dm3] X_9115753_SNP [dm6]	C	T	1.890e^-4	0.907	INTRON AP-1gamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5687371	3L_5687371_SNP [dm3] 3L_5694271_SNP [dm6]	G	A	1.895e^-4	0.907	INTRON sif
2L	9582788	2L_9582788_SNP [dm3] 2L_9582788_SNP [dm6]	A	T	1.918e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	2757815	2L_2757815_SNP [dm3] 2L_2757815_SNP [dm6]	G	T	1.919e^-4	0.907	UTR_3_PRIME Bacc DOWNSTREAM CR44772 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2L	14530971	2L_14530971_SNP [dm3] 2L_14530971_SNP [dm6]	T	C	1.919e^-4	0.907	UPSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5667956	3L_5667956_SNP [dm3] 3L_5674856_SNP [dm6]	T	C	1.919e^-4	0.907	SYNONYMOUS_CODING sif	TF binding site mE1_TFBS_chinmo
3R	21738671	3R_21738671_SNP [dm3] 3R_25912949_SNP [dm6]	G	T	1.928e^-4	0.907	UTR_3_PRIME CG42235 INTRON CG42235
2L	10039081	2L_10039081_SNP [dm3] 2L_10039081_SNP [dm6]	T	G	1.938e^-4	0.907	DOWNSTREAM obst-B INTERGENIC
3L	14637654	3L_14637654_SNP [dm3] 3L_14644554_SNP [dm6]	A	G	1.951e^-4	0.907	INTRON dlp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4942262	3L_4942262_SNP [dm3] 3L_4942262_SNP [dm6]	A	G	1.952e^-4	0.907	INTRON Con
3L	2830185	3L_2830185_SNP [dm3] 3L_2830185_SNP [dm6]	C	T	1.954e^-4	0.907	INTRON CG43444
2R	7202269	2R_7202269_SNP [dm3] 2R_11314764_SNP [dm6]	G	A	1.959e^-4	0.907	INTRON nompA	TF binding site mE1_TFBS_cad
2L	7908781	2L_7908781_SNP [dm3] 2L_7908781_SNP [dm6]	A	C	1.959e^-4	0.907	INTRON Snoo
2L	7908782	2L_7908782_SNP [dm3] 2L_7908782_SNP [dm6]	C	A	1.959e^-4	0.907	INTRON Snoo
X	19006741	X_19006741_SNP [dm3] X_19112708_SNP [dm6]	A	G	1.963e^-4	0.907	INTERGENIC
3L	7625212	3L_7625212_SNP [dm3] 3L_7632112_SNP [dm6]	G	A	1.968e^-4	0.907	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10872315	3L_10872315_SNP [dm3] 3L_10879215_SNP [dm6]	C	T	1.973e^-4	0.907	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12451534	2R_12451534_SNP [dm3] 2R_16564029_SNP [dm6]	G	A	1.991e^-4	0.907	SPLICE_SITE_REGION DAT INTRON DAT
3R	25142432	3R_25142432_DEL [dm3] 3R_29316710_DEL [dm6]	TT	T	2.003e^-4	0.907	INTRON Cnx99A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	10808760	2L_10808760_SNP [dm3] 2L_10808760_SNP [dm6]	G	T	2.005e^-4	0.907	INTRON Nos
X	14808558	X_14808558_SNP [dm3] X_14914525_SNP [dm6]	T	A	2.009e^-4	0.907	UPSTREAM CG12398 INTRON Flo2
3L	16393821	3L_16393821_SNP [dm3] 3L_16400721_SNP [dm6]	C	T	2.012e^-4	0.907	UPSTREAM CG44836 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8630528	X_8630528_SNP [dm3] X_8736495_SNP [dm6]	C	T	2.014e^-4	0.907	INTERGENIC
X	5530275	X_5530275_SNP [dm3] X_5636242_SNP [dm6]	G	A	2.015e^-4	0.907	SYNONYMOUS_CODING CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	8925812	2L_8925812_SNP [dm3] 2L_8925812_SNP [dm6]	T	C	2.017e^-4	0.907	SYNONYMOUS_CODING CG34398	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6156833	X_6156833_SNP [dm3] X_6262800_SNP [dm6]	C	T	2.018e^-4	0.907	DOWNSTREAM CG3781 INTRON schlank
3L	2996102	3L_2996102_SNP [dm3] 3L_2996102_SNP [dm6]	C	T	2.025e^-4	0.907	UTR_3_PRIME CG2113
X	10873734	X_10873734_SNP [dm3] X_10979701_SNP [dm6]	C	A	2.027e^-4	0.907	INTRON CG42339
3L	2851412	3L_2851412_SNP [dm3] 3L_2851412_SNP [dm6]	T	G	2.039e^-4	0.907	INTRON CG43444	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
2R	10791451	2R_10791451_SNP [dm3] 2R_14903946_SNP [dm6]	T	C	2.047e^-4	0.907	UPSTREAM CG10249 DOWNSTREAM Cyp317a1 INTRON CG10249
3L	5416736	3L_5416736_SNP [dm3] 3L_5423636_SNP [dm6]	A	G	2.053e^-4	0.907	UPSTREAM CG34391 INTERGENIC
3R	25138807	3R_25138807_SNP [dm3] 3R_29313085_SNP [dm6]	A	G	2.066e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	9657616	3R_9657616_SNP [dm3] 3R_13831894_SNP [dm6]	T	A	2.082e^-4	0.907	INTERGENIC
X	20019557	X_20019557_SNP [dm3] X_20125524_SNP [dm6]	C	T	2.082e^-4	0.907	DOWNSTREAM CG34331 INTERGENIC
2R	8928823	2R_8928823_INS [dm3] 2R_13041318_INS [dm6]	T	TA	2.084e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
2R	15150975	2R_15150975_SNP [dm3] 2R_19263470_SNP [dm6]	T	C	2.086e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	19051480	2R_19051480_SNP [dm3] 2R_23163957_SNP [dm6]	T	A	2.089e^-4	0.907	UTR_3_PRIME CG34371
2L	20559452	2L_20559452_SNP [dm3] 2L_20559452_SNP [dm6]	G	C	2.096e^-4	0.907	INTERGENIC
X	15545086	X_15545086_SNP [dm3] X_15651053_SNP [dm6]	A	G	2.096e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8978848	3L_8978848_SNP [dm3] 3L_8985748_SNP [dm6]	G	A	2.102e^-4	0.907	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	1952175	2L_1952175_SNP [dm3] 2L_1952175_SNP [dm6]	C	A	2.103e^-4	0.907	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	14808560	X_14808560_SNP [dm3] X_14914527_SNP [dm6]	A	G	2.110e^-4	0.907	UPSTREAM CG12398 INTRON Flo2
2L	6112571	2L_6112571_SNP [dm3] 2L_6112571_SNP [dm6]	T	C	2.121e^-4	0.907	INTRON stai
2R	12169707	2R_12169707_SNP [dm3] 2R_16282202_SNP [dm6]	G	A	2.127e^-4	0.907	SYNONYMOUS_CODING CG7755 DOWNSTREAM CG15705	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17527028	3L_17527028_SNP [dm3] 3L_17533928_SNP [dm6]	C	A	2.131e^-4	0.907	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14505881	2R_14505881_SNP [dm3] 2R_18618376_SNP [dm6]	T	C	2.133e^-4	0.907	UPSTREAM CG5493 DOWNSTREAM CG5327 INTRON CG5493	TF binding site BDTNP1_TFBS_z
2R	7202091	2R_7202091_SNP [dm3] 2R_11314586_SNP [dm6]	A	T	2.134e^-4	0.907	NON_SYNONYMOUS_CODING nompA INTRON nompA	TF binding site mE1_TFBS_cad
X	11301350	X_11301350_SNP [dm3] X_11407317_SNP [dm6]	T	A	2.140e^-4	0.907	UTR_3_PRIME dlg1
2R	8110592	2R_8110592_DEL [dm3] 2R_12223087_DEL [dm6]	TAC	T	2.142e^-4	0.907	INTERGENIC
2R	3348597	2R_3348597_SNP [dm3] 2R_7461092_SNP [dm6]	G	T	2.149e^-4	0.907	SYNONYMOUS_CODING CG11141	TF binding site mE1_TFBS_cad
X	17911707	X_17911707_DEL [dm3] X_18017674_DEL [dm6]	AGTATATTAAAA...	A	2.153e^-4	0.907	INTRON Sh
2R	7087387	2R_7087387_SNP [dm3] 2R_11199882_SNP [dm6]	C	G	2.160e^-4	0.907	INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	13292441	3L_13292441_SNP [dm3] 3L_13299341_SNP [dm6]	G	T	2.166e^-4	0.907	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	16501325	2R_16501325_SNP [dm3] 2R_20613820_SNP [dm6]	G	A	2.166e^-4	0.907	INTRON Hil
2L	17499234	2L_17499234_SNP [dm3] 2L_17499234_SNP [dm6]	G	A	2.167e^-4	0.907	UPSTREAM CG15142 DOWNSTREAM CG6412 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3029846	X_3029846_SNP [dm3] X_3135813_SNP [dm6]	C	T	2.175e^-4	0.907	NON_SYNONYMOUS_CODING N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	4216788	2R_4216788_SNP [dm3] 2R_8329283_SNP [dm6]	G	A	2.178e^-4	0.907	INTRON pdm3
3L	11174462	3L_11174462_SNP [dm3] 3L_11181362_SNP [dm6]	G	A	2.179e^-4	0.907	INTRON GlcAT-P
X	20478640	X_20478640_SNP [dm3] X_20607613_SNP [dm6]	C	G	2.179e^-4	0.907	INTRON RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2809778	3R_2809778_SNP [dm3] 3R_6984056_SNP [dm6]	A	T	2.180e^-4	0.907	INTRON Antp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4772759	2L_4772759_SNP [dm3] 2L_4772759_SNP [dm6]	T	G	2.181e^-4	0.907	INTRON CG15630
2L	10180808	2L_10180808_SNP [dm3] 2L_10180808_SNP [dm6]	G	A	2.183e^-4	0.907	UPSTREAM CG44153 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26975709	3R_26975709_SNP [dm3] 3R_31149987_SNP [dm6]	C	T	2.193e^-4	0.907	INTRON Gycbeta100B
2L	20589826	2L_20589826_SNP [dm3] 2L_20589826_SNP [dm6]	T	A	2.195e^-4	0.907	INTRON CR44909
2L	20643596	2L_20643596_SNP [dm3] 2L_20643596_SNP [dm6]	C	T	2.202e^-4	0.907	UTR_3_PRIME phr6-4 UPSTREAM CG17470
3R	19839587	3R_19839587_SNP [dm3] 3R_24013865_SNP [dm6]	A	G	2.206e^-4	0.907	INTRON KrT95D
2R	16373993	2R_16373993_SNP [dm3] 2R_20486488_SNP [dm6]	G	A	2.213e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4942278	3L_4942278_SNP [dm3] 3L_4942278_SNP [dm6]	T	A	2.226e^-4	0.907	INTRON Con
2R	20117900	2R_20117900_SNP [dm3] 2R_24230377_SNP [dm6]	C	A	2.231e^-4	0.907	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	20117913	2R_20117913_SNP [dm3] 2R_24230390_SNP [dm6]	A	T	2.231e^-4	0.907	UPSTREAM CG30419 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	19357985	2R_19357985_SNP [dm3] 2R_23470462_SNP [dm6]	C	T	2.234e^-4	0.907	SYNONYMOUS_CODING Or59b INTRON CG43795
2R	9347982	2R_9347982_SNP [dm3] 2R_13460477_SNP [dm6]	A	T	2.236e^-4	0.907	INTRON arr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4942595	3L_4942595_SNP [dm3] 3L_4942595_SNP [dm6]	T	C	2.239e^-4	0.907	INTRON Con
X	21323256	X_21323256_SNP [dm3] X_21452229_SNP [dm6]	T	A	2.249e^-4	0.907	INTRON CG42343	transposable element FlyBase
3L	8978680	3L_8978680_SNP [dm3] 3L_8985580_SNP [dm6]	T	C	2.254e^-4	0.907	START_GAINED Galk UTR_5_PRIME Galk INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D
2L	4381866	2L_4381866_SNP [dm3] 2L_4381866_SNP [dm6]	G	A	2.262e^-4	0.907	SYNONYMOUS_CODING CG17612	TF binding site mE1_TFBS_sens
2L	14193379	2L_14193379_SNP [dm3] 2L_14193379_SNP [dm6]	A	G	2.264e^-4	0.907	INTRON Dyrk2
3L	14978384	3L_14978384_SNP [dm3] 3L_14985284_SNP [dm6]	T	A	2.264e^-4	0.907	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	12839452	2L_12839452_SNP [dm3] 2L_12839452_SNP [dm6]	A	C	2.268e^-4	0.907	INTERGENIC
2R	9258451	2R_9258451_SNP [dm3] 2R_13370946_SNP [dm6]	G	A	2.270e^-4	0.907	INTERGENIC
2R	18486449	2R_18486449_SNP [dm3] 2R_22598944_SNP [dm6]	T	A	2.275e^-4	0.907	UPSTREAM CG4269 INTRON CG4269
2R	10751011	2R_10751011_SNP [dm3] 2R_14863506_SNP [dm6]	T	G	2.285e^-4	0.907	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1004589	3L_1004589_SNP [dm3] 3L_1004589_SNP [dm6]	A	G	2.292e^-4	0.907	INTRON trio
3R	18507277	3R_18507277_SNP [dm3] 3R_22681555_SNP [dm6]	G	C	2.302e^-4	0.907	SYNONYMOUS_CODING CG45058	TF binding site mE1_TFBS_cad
2L	11833384	2L_11833384_SNP [dm3] 2L_11833384_SNP [dm6]	A	C	2.306e^-4	0.907	UPSTREAM CG45011 INTRON Pde1c
2R	10013716	2R_10013716_SNP [dm3] 2R_14126211_SNP [dm6]	A	C	2.314e^-4	0.907	INTRON Prosap
2R	12059357	2R_12059357_SNP [dm3] 2R_16171852_SNP [dm6]	G	A	2.321e^-4	0.907	SYNONYMOUS_CODING Ptp52F UPSTREAM CG8435	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26975748	3R_26975748_SNP [dm3] 3R_31150026_SNP [dm6]	C	T	2.322e^-4	0.907	INTRON Gycbeta100B
2R	17028513	2R_17028513_SNP [dm3] 2R_21141008_SNP [dm6]	T	C	2.326e^-4	0.907	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	11907061	2L_11907061_SNP [dm3] 2L_11907061_SNP [dm6]	T	G	2.340e^-4	0.907	INTRON Pde1c
X	10120740	X_10120740_INS [dm3] X_10226707_INS [dm6]	T	TG	2.343e^-4	0.907	UPSTREAM CG34408 INTRON CG34408	TF binding site BDTNP1_TFBS_twi
X	5764358	X_5764358_DEL [dm3] X_5870325_DEL [dm6]	TCT	T	2.348e^-4	0.907	DOWNSTREAM GAA1 & 1 other INTERGENIC
3L	12742351	3L_12742351_SNP [dm3] 3L_12749251_SNP [dm6]	T	A	2.358e^-4	0.907	UPSTREAM Klc & 1 other INTRON Klc
X	11440408	X_11440408_SNP [dm3] X_11546375_SNP [dm6]	C	A	2.359e^-4	0.907	INTRON Drak
2R	18486447	2R_18486447_SNP [dm3] 2R_22598942_SNP [dm6]	G	A	2.360e^-4	0.907	UPSTREAM CG4269 INTRON CG4269
3L	7275626	3L_7275626_SNP [dm3] 3L_7282526_SNP [dm6]	T	C	2.375e^-4	0.907	INTRON unc-13-4A
2R	12168353	2R_12168353_SNP [dm3] 2R_16280848_SNP [dm6]	T	G	2.380e^-4	0.907	UPSTREAM CG15705 DOWNSTREAM CG15704 & 1 other INTERGENIC
3R	4225281	3R_4225281_SNP [dm3] 3R_8399559_SNP [dm6]	T	C	2.381e^-4	0.907	SPLICE_SITE_REGION CG45263 INTRON CG45263
2L	12244530	2L_12244530_SNP [dm3] 2L_12244530_SNP [dm6]	T	C	2.383e^-4	0.907	INTRON aret
X	6442508	X_6442508_SNP [dm3] X_6548475_SNP [dm6]	G	A	2.384e^-4	0.907	INTRON CG34417
2R	19545150	2R_19545150_SNP [dm3] 2R_23657627_SNP [dm6]	C	A	2.390e^-4	0.907	UTR_5_PRIME Pde8	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17558767	3L_17558767_DEL [dm3] 3L_17565667_DEL [dm6]	CTGCAGTTGCTGCTGC...	C	2.397e^-4	0.907	CODON_DELETION Eip74EF DOWNSTREAM snoRNA:Me28S-A576
X	21181927	X_21181927_SNP [dm3] X_21310900_SNP [dm6]	C	T	2.399e^-4	0.907	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19320763	2L_19320763_SNP [dm3] 2L_19320763_SNP [dm6]	C	A	2.399e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1524172	3L_1524172_SNP [dm3] 3L_1524172_SNP [dm6]	A	C	2.401e^-4	0.907	DOWNSTREAM Psa INTRON CG12090
3L	7143115	3L_7143115_SNP [dm3] 3L_7150015_SNP [dm6]	C	T	2.406e^-4	0.907	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	22296444	2L_22296444_SNP [dm3] 2L_22296444_SNP [dm6]	C	T	2.410e^-4	0.907	INTERGENIC	transposable element FlyBase
3L	7809308	3L_7809308_SNP [dm3] 3L_7816208_SNP [dm6]	C	A	2.418e^-4	0.907	UTR_3_PRIME Pdp1
3L	10594197	3L_10594197_INS [dm3] 3L_10601097_INS [dm6]	A	AT	2.420e^-4	0.907	INTERGENIC
2R	15268749	2R_15268749_INS [dm3] 2R_19381244_INS [dm6]	T	ATTAA	2.427e^-4	0.907	UPSTREAM CG10073 INTRON CG10073
2R	14830624	2R_14830624_SNP [dm3] 2R_18943119_SNP [dm6]	C	G	2.431e^-4	0.907	INTRON sano
2R	10529848	2R_10529848_SNP [dm3] 2R_14642343_SNP [dm6]	T	A	2.446e^-4	0.907	INTERGENIC
2R	19772972	2R_19772972_SNP [dm3] 2R_23885449_SNP [dm6]	C	T	2.458e^-4	0.907	INTERGENIC
2R	9262010	2R_9262010_SNP [dm3] 2R_13374505_SNP [dm6]	T	C	2.469e^-4	0.907	INTERGENIC
3R	3054840	3R_3054840_SNP [dm3] 3R_7229118_SNP [dm6]	G	T	2.480e^-4	0.907	INTRON CG14608
2L	1952202	2L_1952202_SNP [dm3] 2L_1952202_SNP [dm6]	C	T	2.507e^-4	0.907	SYNONYMOUS_CODING erm	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10874164	3L_10874164_SNP [dm3] 3L_10881064_SNP [dm6]	G	C	2.507e^-4	0.907	NON_SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18064394	3L_18064394_SNP [dm3] 3L_18071294_SNP [dm6]	A	C	2.513e^-4	0.907	INTRON CG44005
2L	13876154	2L_13876154_SNP [dm3] 2L_13876154_SNP [dm6]	G	A	2.517e^-4	0.907	INTRON CenG1A
3R	10881966	3R_10881966_SNP [dm3] 3R_15056244_SNP [dm6]	C	T	2.519e^-4	0.907	UTR_3_PRIME dpr9 DOWNSTREAM dpr9
3L	10032924	3L_10032924_SNP [dm3] 3L_10039824_SNP [dm6]	T	A	2.520e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2L	9631763	2L_9631763_SNP [dm3] 2L_9631763_SNP [dm6]	A	G	2.544e^-4	0.907	INTERGENIC
2L	12167637	2L_12167637_SNP [dm3] 2L_12167637_SNP [dm6]	G	T	2.553e^-4	0.907	DOWNSTREAM ZnT33D INTRON CG31760
3L	10032893	3L_10032893_SNP [dm3] 3L_10039793_SNP [dm6]	C	A	2.554e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	10032895	3L_10032895_SNP [dm3] 3L_10039795_SNP [dm6]	G	A	2.554e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	10873827	X_10873827_SNP [dm3] X_10979794_SNP [dm6]	C	T	2.555e^-4	0.907	INTRON CG42339
2R	17326673	2R_17326673_SNP [dm3] 2R_21439168_SNP [dm6]	A	G	2.556e^-4	0.907	INTRON Sdc
2R	16757355	2R_16757355_SNP [dm3] 2R_20869850_SNP [dm6]	T	C	2.559e^-4	0.907	UPSTREAM IM4 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	21083579	X_21083579_SNP [dm3] X_21212552_SNP [dm6]	G	A	2.576e^-4	0.907	INTRON CG32521
X	5478742	X_5478742_SNP [dm3] X_5584709_SNP [dm6]	G	A	2.578e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26976942	3R_26976942_SNP [dm3] 3R_31151220_SNP [dm6]	A	G	2.583e^-4	0.907	INTRON Gycbeta100B
2R	8928834	2R_8928834_SNP [dm3] 2R_13041329_SNP [dm6]	G	A	2.587e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
2R	8928836	2R_8928836_SNP [dm3] 2R_13041331_SNP [dm6]	C	T	2.587e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
2L	4802390	2L_4802390_SNP [dm3] 2L_4802390_SNP [dm6]	G	T	2.592e^-4	0.907	UPSTREAM Clect27 INTERGENIC
2L	3156332	2L_3156332_SNP [dm3] 2L_3156332_SNP [dm6]	G	T	2.596e^-4	0.907	INTRON Mad	TF binding site mE1_TFBS_cad
2R	7085079	2R_7085079_DEL [dm3] 2R_11197574_DEL [dm6]	ACGGAATAATGTAAGCGGAA...	A	2.608e^-4	0.907	UPSTREAM shn INTRON shn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx
2L	16301377	2L_16301377_SNP [dm3] 2L_16301377_SNP [dm6]	G	A	2.615e^-4	0.907	SYNONYMOUS_CODING CG17328 DOWNSTREAM CG5869
3L	7723173	3L_7723173_SNP [dm3] 3L_7730073_SNP [dm6]	G	A	2.619e^-4	0.907	SYNONYMOUS_CODING CG8492 INTRON CG32373
2L	8979635	2L_8979635_INS [dm3] 2L_8979635_INS [dm6]	T	TT	2.621e^-4	0.907	INTRON CG13101
2R	8928860	2R_8928860_SNP [dm3] 2R_13041355_SNP [dm6]	C	G	2.632e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
3L	10033384	3L_10033384_SNP [dm3] 3L_10040284_SNP [dm6]	A	C	2.636e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2R	8928799	2R_8928799_SNP [dm3] 2R_13041294_SNP [dm6]	A	C	2.639e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
3L	15783335	3L_15783335_SNP [dm3] 3L_15790235_SNP [dm6]	C	G	2.639e^-4	0.907	INTERGENIC
2L	11849866	2L_11849866_SNP [dm3] 2L_11849866_SNP [dm6]	G	A	2.643e^-4	0.907	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	3378123	2L_3378123_SNP [dm3] 2L_3378123_SNP [dm6]	T	A	2.646e^-4	0.907	INTRON Ptpa	TF binding site mE1_TFBS_sens
2L	4722850	2L_4722850_SNP [dm3] 2L_4722850_SNP [dm6]	T	A	2.647e^-4	0.907	DOWNSTREAM CG34351 INTERGENIC
2R	10013811	2R_10013811_SNP [dm3] 2R_14126306_SNP [dm6]	A	T	2.653e^-4	0.907	INTRON Prosap
X	21083598	X_21083598_DEL [dm3] X_21212571_DEL [dm6]	GAA	G	2.657e^-4	0.907	INTRON CG32521
2L	6932764	2L_6932764_SNP [dm3] 2L_6932764_SNP [dm6]	T	C	2.661e^-4	0.907	DOWNSTREAM Hrb27C & 1 other INTRON CG18304	TF binding site mE1_TFBS_cad
2R	18338878	2R_18338878_SNP [dm3] 2R_22451373_SNP [dm6]	A	T	2.663e^-4	0.907	INTERGENIC
2L	6011910	2L_6011910_SNP [dm3] 2L_6011910_SNP [dm6]	C	T	2.665e^-4	0.907	SYNONYMOUS_CODING CG9098 UTR_5_PRIME CG9098 UPSTREAM CG9098	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6954340	2R_6954340_SNP [dm3] 2R_11066835_SNP [dm6]	T	G	2.668e^-4	0.907	INTRON luna
3L	2496787	3L_2496787_SNP [dm3] 3L_2496787_SNP [dm6]	G	A	2.683e^-4	0.907	SYNONYMOUS_CODING CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14363727	2R_14363727_SNP [dm3] 2R_18476222_SNP [dm6]	A	G	2.685e^-4	0.907	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9514331	2L_9514331_SNP [dm3] 2L_9514331_SNP [dm6]	C	T	2.692e^-4	0.907	INTRON CG33298
2L	9545020	2L_9545020_SNP [dm3] 2L_9545020_SNP [dm6]	G	C	2.705e^-4	0.907	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
2R	3256814	2R_3256814_SNP [dm3] 2R_7369309_SNP [dm6]	T	A	2.713e^-4	0.907	INTRON Dscam1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12142387	X_12142387_INS [dm3] X_12248354_INS [dm6]	T	TT	2.730e^-4	0.907	INTRON Ten-a
X	15558954	X_15558954_INS [dm3] X_15664921_INS [dm6]	T	TAAGTTTATTACTTTTGTC...	2.731e^-4	0.907	INTRON CR43299 EXON CR43299
2L	11289118	2L_11289118_SNP [dm3] 2L_11289118_SNP [dm6]	C	T	2.747e^-4	0.907	INTERGENIC
2L	19310944	2L_19310944_SNP [dm3] 2L_19310944_SNP [dm6]	G	A	2.748e^-4	0.907	INTERGENIC
3L	17527297	3L_17527297_SNP [dm3] 3L_17534197_SNP [dm6]	T	C	2.749e^-4	0.907	INTRON Nedd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26976342	3R_26976342_SNP [dm3] 3R_31150620_SNP [dm6]	C	T	2.751e^-4	0.907	SYNONYMOUS_CODING Gycbeta100B
2L	9532854	2L_9532854_SNP [dm3] 2L_9532854_SNP [dm6]	A	C	2.761e^-4	0.907	INTRON Oatp30B
3L	2088643	3L_2088643_SNP [dm3] 3L_2088643_SNP [dm6]	C	T	2.765e^-4	0.907	UTR_3_PRIME sls INTRON sls & 1 other EXON CR42860	TF binding site mE1_TFBS_HSA
3R	2752395	3R_2752395_SNP [dm3] 3R_6926673_SNP [dm6]	C	T	2.771e^-4	0.907	INTRON Antp
X	11935816	X_11935816_SNP [dm3] X_12041783_SNP [dm6]	G	C	2.774e^-4	0.907	INTERGENIC
2L	2549929	2L_2549929_SNP [dm3] 2L_2549929_SNP [dm6]	C	T	2.775e^-4	0.907	INTERGENIC
X	10077009	X_10077009_INS [dm3] X_10182976_INS [dm6]	C	CAC	2.776e^-4	0.907	INTRON CG43902 & 1 other
3L	4891954	3L_4891954_SNP [dm3] 3L_4891954_SNP [dm6]	A	T	2.779e^-4	0.907	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12585650	X_12585650_SNP [dm3] X_12691617_SNP [dm6]	T	G	2.786e^-4	0.907	NON_SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10872329	3L_10872329_SNP [dm3] 3L_10879229_SNP [dm6]	C	T	2.788e^-4	0.907	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8978821	3L_8978821_SNP [dm3] 3L_8985721_SNP [dm6]	G	T	2.800e^-4	0.907	UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	18340000	2L_18340000_SNP [dm3] 2L_18340000_SNP [dm6]	G	A	2.804e^-4	0.907	INTRON Fas3
2L	11291862	2L_11291862_SNP [dm3] 2L_11291862_SNP [dm6]	A	C	2.806e^-4	0.907	UPSTREAM CR43409 INTERGENIC
3L	6073737	3L_6073737_SNP [dm3] 3L_6080637_SNP [dm6]	G	A	2.810e^-4	0.907	SYNONYMOUS_CODING CG6619	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3756880	2L_3756880_SNP [dm3] 2L_3756880_SNP [dm6]	G	C	2.813e^-4	0.907	UPSTREAM CG43707 INTERGENIC
3R	7596517	3R_7596517_INS [dm3] 3R_11770795_INS [dm6]	A	AA	2.815e^-4	0.907	INTRON l_3_neo38	TF binding site BDTNP1_TFBS_dl
2L	4381884	2L_4381884_SNP [dm3] 2L_4381884_SNP [dm6]	T	C	2.837e^-4	0.907	SYNONYMOUS_CODING CG17612	TF binding site mE1_TFBS_sens
3R	20038907	3R_20038907_SNP [dm3] 3R_24213185_SNP [dm6]	T	C	2.838e^-4	0.907	INTRON twin
2R	10015442	2R_10015442_SNP [dm3] 2R_14127937_SNP [dm6]	C	T	2.840e^-4	0.907	INTRON Prosap
2R	19196449	2R_19196449_SNP [dm3] 2R_23308926_SNP [dm6]	G	A	2.850e^-4	0.907	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10318897	2L_10318897_SNP [dm3] 2L_10318897_SNP [dm6]	A	T	2.862e^-4	0.907	SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
3L	10032897	3L_10032897_SNP [dm3] 3L_10039797_SNP [dm6]	T	A	2.865e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3L	7728151	3L_7728151_SNP [dm3] 3L_7735051_SNP [dm6]	G	T	2.870e^-4	0.907	INTRON CG32373 & 1 other
3L	14416158	3L_14416158_DEL [dm3] 3L_14423058_DEL [dm6]	CC	C	2.875e^-4	0.907	INTRON bbg
2R	8111287	2R_8111287_SNP [dm3] 2R_12223782_SNP [dm6]	G	A	2.881e^-4	0.907	DOWNSTREAM CG8854 INTERGENIC
X	10873606	X_10873606_SNP [dm3] X_10979573_SNP [dm6]	G	A	2.884e^-4	0.907	INTRON CG42339
2L	9061037	2L_9061037_SNP [dm3] 2L_9061037_SNP [dm6]	G	A	2.886e^-4	0.907	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9061055	2L_9061055_SNP [dm3] 2L_9061055_SNP [dm6]	C	A	2.886e^-4	0.907	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9061080	2L_9061080_SNP [dm3] 2L_9061080_SNP [dm6]	G	A	2.886e^-4	0.907	INTRON CG31708	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	15558896	X_15558896_INS [dm3] X_15664863_INS [dm6]	C	CCC	2.887e^-4	0.907	SPLICE_SITE_ACCEPTOR CR43299 INTRON CR43299 EXON CR43299
3L	7809083	3L_7809083_DEL [dm3] 3L_7815983_DEL [dm6]	TT	T	2.889e^-4	0.907	UTR_3_PRIME Pdp1
X	5900075	X_5900075_SNP [dm3] X_6006042_SNP [dm6]	T	C	2.890e^-4	0.907	DOWNSTREAM CR44498 INTERGENIC
3L	14978371	3L_14978371_SNP [dm3] 3L_14985271_SNP [dm6]	T	C	2.890e^-4	0.907	DOWNSTREAM CG5114 INTRON mnd	TF binding site mE1_TFBS_Kr
3L	9358779	3L_9358779_SNP [dm3] 3L_9365679_SNP [dm6]	C	T	2.893e^-4	0.907	SYNONYMOUS_CODING Klp67A DOWNSTREAM CG4447	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16427896	X_16427896_SNP [dm3] X_16533863_SNP [dm6]	G	C	2.895e^-4	0.907	UPSTREAM para INTERGENIC
2R	15317672	2R_15317672_SNP [dm3] 2R_19430167_SNP [dm6]	G	A	2.910e^-4	0.907	DOWNSTREAM Fak INTRON CalpA
3L	7231638	3L_7231638_SNP [dm3] 3L_7238538_SNP [dm6]	A	T	2.920e^-4	0.907	UPSTREAM BHD & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	1182696	2L_1182696_SNP [dm3] 2L_1182696_SNP [dm6]	T	C	2.925e^-4	0.907	SYNONYMOUS_CODING CG5126 DOWNSTREAM CG4896	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10032937	3L_10032937_SNP [dm3] 3L_10039837_SNP [dm6]	T	G	2.926e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
X	15558951	X_15558951_SNP [dm3] X_15664918_SNP [dm6]	T	A	2.932e^-4	0.907	INTRON CR43299 EXON CR43299
2R	2458135	2R_2458135_SNP [dm3] 2R_6570630_SNP [dm6]	T	C	2.941e^-4	0.907	INTRON jing	transposable element FlyBase
3R	25696323	3R_25696323_SNP [dm3] 3R_29870601_SNP [dm6]	A	C	2.943e^-4	0.907	INTRON CG34133
3R	13575441	3R_13575441_SNP [dm3] 3R_17749719_SNP [dm6]	T	C	2.951e^-4	0.907	DOWNSTREAM TyrR INTERGENIC
2L	6774910	2L_6774910_SNP [dm3] 2L_6774910_SNP [dm6]	C	T	2.965e^-4	0.907	UPSTREAM CG17378 INTRON CG17378
X	21323379	X_21323379_SNP [dm3] X_21452352_SNP [dm6]	C	A	2.971e^-4	0.907	INTRON CG42343	transposable element FlyBase
3L	10462513	3L_10462513_SNP [dm3] 3L_10469413_SNP [dm6]	T	C	2.971e^-4	0.907	DOWNSTREAM S-Lap3 INTERGENIC
X	11390330	X_11390330_SNP [dm3] X_11496297_SNP [dm6]	T	C	2.989e^-4	0.907	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4122840	X_4122840_SNP [dm3] X_4228807_SNP [dm6]	C	T	2.991e^-4	0.907	INTERGENIC
3R	21027963	3R_21027963_SNP [dm3] 3R_25202241_SNP [dm6]	G	T	2.992e^-4	0.907	INTRON CG13654 & 1 other
2L	8303627	2L_8303627_SNP [dm3] 2L_8303627_SNP [dm6]	A	G	2.996e^-4	0.907	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20239738	X_20239738_SNP [dm3] X_20368711_SNP [dm6]	A	G	2.998e^-4	0.907	INTERGENIC
X	14857670	X_14857670_SNP [dm3] X_14963637_SNP [dm6]	T	A	2.999e^-4	0.907	INTRON eag
3L	10032593	3L_10032593_SNP [dm3] 3L_10039493_SNP [dm6]	G	A	3.003e^-4	0.907	INTRON dpr6
2R	14830618	2R_14830618_SNP [dm3] 2R_18943113_SNP [dm6]	A	G	3.009e^-4	0.907	INTRON sano
2R	11633760	2R_11633760_SNP [dm3] 2R_15746255_SNP [dm6]	G	A	3.009e^-4	0.907	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5552088	X_5552088_SNP [dm3] X_5658055_SNP [dm6]	C	A	3.012e^-4	0.907	INTRON CG42265
3L	12061199	3L_12061199_SNP [dm3] 3L_12068099_SNP [dm6]	G	A	3.019e^-4	0.907	UTR_3_PRIME Sema-5c
3R	25693785	3R_25693785_INS [dm3] 3R_29868063_INS [dm6]	T	TTGAG	3.030e^-4	0.907	UTR_5_PRIME Zip99C UPSTREAM Zip99C INTRON Zip99C	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	15262594	3R_15262594_SNP [dm3] 3R_19436872_SNP [dm6]	A	C	3.035e^-4	0.907	INTRON CG31221
X	9604529	X_9604529_SNP [dm3] X_9710496_SNP [dm6]	C	T	3.037e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	9262204	2R_9262204_SNP [dm3] 2R_13374699_SNP [dm6]	G	C	3.040e^-4	0.907	INTERGENIC
2L	4412952	2L_4412952_SNP [dm3] 2L_4412952_SNP [dm6]	C	T	3.045e^-4	0.907	INTRON CG15431
3R	19840098	3R_19840098_SNP [dm3] 3R_24014376_SNP [dm6]	T	C	3.050e^-4	0.907	INTRON KrT95D
3L	10462462	3L_10462462_SNP [dm3] 3L_10469362_SNP [dm6]	G	A	3.081e^-4	0.907	DOWNSTREAM S-Lap3 INTERGENIC
X	5552010	X_5552010_SNP [dm3] X_5657977_SNP [dm6]	A	G	3.084e^-4	0.907	INTRON CG42265
X	5552028	X_5552028_SNP [dm3] X_5657995_SNP [dm6]	T	A	3.084e^-4	0.907	INTRON CG42265
2L	3231385	2L_3231385_INS [dm3] 2L_3231385_INS [dm6]	C	CC	3.086e^-4	0.907	INTERGENIC
2L	9314647	2L_9314647_SNP [dm3] 2L_9314647_SNP [dm6]	T	A	3.090e^-4	0.907	INTERGENIC
2L	14252693	2L_14252693_SNP [dm3] 2L_14252693_SNP [dm6]	A	T	3.099e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	26288486	3R_26288486_SNP [dm3] 3R_30462764_SNP [dm6]	A	T	3.102e^-4	0.907	INTRON CDase
X	20478639	X_20478639_SNP [dm3] X_20607612_SNP [dm6]	T	C	3.105e^-4	0.907	INTRON RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20478642	X_20478642_SNP [dm3] X_20607615_SNP [dm6]	A	T	3.105e^-4	0.907	INTRON RunxA	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19520528	3R_19520528_SNP [dm3] 3R_23694806_SNP [dm6]	A	G	3.113e^-4	0.907	UPSTREAM CG10254 DOWNSTREAM CG10252 & 1 other INTRON CG10254	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu
X	21083558	X_21083558_SNP [dm3] X_21212531_SNP [dm6]	C	T	3.119e^-4	0.907	INTRON CG32521
3R	26978080	3R_26978080_SNP [dm3] 3R_31152358_SNP [dm6]	C	T	3.133e^-4	0.907	INTRON Gycbeta100B
2L	14270589	2L_14270589_SNP [dm3] 2L_14270589_SNP [dm6]	A	C	3.133e^-4	0.907	INTRON wb
2L	14270592	2L_14270592_SNP [dm3] 2L_14270592_SNP [dm6]	C	A	3.133e^-4	0.907	INTRON wb
2R	11108768	2R_11108768_SNP [dm3] 2R_15221263_SNP [dm6]	G	T	3.136e^-4	0.907	UPSTREAM Hex-C INTRON CG8079
3R	25698033	3R_25698033_SNP [dm3] 3R_29872311_SNP [dm6]	T	C	3.139e^-4	0.907	SYNONYMOUS_CODING CG34133	TF binding site mE1_TFBS_cad
2R	13584901	2R_13584901_SNP [dm3] 2R_17697396_SNP [dm6]	G	A	3.141e^-4	0.907	UPSTREAM CR45146 INTRON rdgBbeta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5310257	2R_5310257_SNP [dm3] 2R_9422752_SNP [dm6]	A	G	3.146e^-4	0.907	SYNONYMOUS_CODING CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9766228	2L_9766228_SNP [dm3] 2L_9766228_SNP [dm6]	C	G	3.150e^-4	0.907	NON_SYNONYMOUS_CODING ppk18 UPSTREAM CG4017 DOWNSTREAM und
2R	12470353	2R_12470353_SNP [dm3] 2R_16582848_SNP [dm6]	T	G	3.151e^-4	0.907	INTRON Cdk4 EXON CR44375	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	3402131	X_3402131_SNP [dm3] X_3508098_SNP [dm6]	A	G	3.152e^-4	0.907	UTR_3_PRIME CG32791 INTRON CR44999	TF binding site mE1_TFBS_HSA
2R	11579980	2R_11579980_SNP [dm3] 2R_15692475_SNP [dm6]	A	T	3.165e^-4	0.907	NON_SYNONYMOUS_CODING CG30087 DOWNSTREAM CG30088 EXON CR44372
X	15558915	X_15558915_SNP [dm3] X_15664882_SNP [dm6]	T	C	3.167e^-4	0.907	INTRON CR43299 EXON CR43299
2R	6288964	2R_6288964_SNP [dm3] 2R_10401459_SNP [dm6]	A	G	3.172e^-4	0.907	INTRON CG42732
2L	14528785	2L_14528785_SNP [dm3] 2L_14528785_SNP [dm6]	A	G	3.177e^-4	0.907	INTERGENIC
X	8393431	X_8393431_SNP [dm3] X_8499398_SNP [dm6]	A	T	3.179e^-4	0.907	INTRON CG33181
X	15153535	X_15153535_SNP [dm3] X_15259502_SNP [dm6]	T	A	3.179e^-4	0.907	INTERGENIC
3L	8048129	3L_8048129_SNP [dm3] 3L_8055029_SNP [dm6]	G	A	3.180e^-4	0.907	SYNONYMOUS_CODING bip1 DOWNSTREAM nmo	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9904773	2L_9904773_SNP [dm3] 2L_9904773_SNP [dm6]	T	A	3.194e^-4	0.907	INTRON CG13124	TF binding site mE1_TFBS_cad
2L	21015046	2L_21015046_SNP [dm3] 2L_21015046_SNP [dm6]	A	T	3.201e^-4	0.907	INTRON CG42238
2R	18205542	2R_18205542_SNP [dm3] 2R_22318037_SNP [dm6]	G	A	3.204e^-4	0.907	UPSTREAM Gp150 DOWNSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	9773112	3L_9773112_SNP [dm3] 3L_9780012_SNP [dm6]	G	T	3.219e^-4	0.907	INTRON CG8177
3R	2876491	3R_2876491_SNP [dm3] 3R_7050769_SNP [dm6]	C	T	3.221e^-4	0.907	INTERGENIC
2L	4803879	2L_4803879_SNP [dm3] 2L_4803879_SNP [dm6]	T	G	3.224e^-4	0.907	INTERGENIC
3L	5427596	3L_5427596_SNP [dm3] 3L_5434496_SNP [dm6]	C	T	3.228e^-4	0.907	INTRON CG34391
3R	21228918	3R_21228918_SNP [dm3] 3R_25403196_SNP [dm6]	A	G	3.229e^-4	0.907	INTRON Fur1
3L	1524164	3L_1524164_SNP [dm3] 3L_1524164_SNP [dm6]	C	A	3.239e^-4	0.907	DOWNSTREAM Psa INTRON CG12090
3R	12795828	3R_12795828_SNP [dm3] 3R_16970106_SNP [dm6]	T	C	3.240e^-4	0.907	INTRON Abd-B	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	13277338	3R_13277338_SNP [dm3] 3R_17451616_SNP [dm6]	C	T	3.241e^-4	0.907	INTERGENIC
3L	14536121	3L_14536121_SNP [dm3] 3L_14543021_SNP [dm6]	C	T	3.245e^-4	0.907	INTRON CG9238
3L	18377394	3L_18377394_SNP [dm3] 3L_18384294_SNP [dm6]	T	A	3.246e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	15558858	X_15558858_SNP [dm3] X_15664825_SNP [dm6]	A	G	3.248e^-4	0.907	INTRON CR43299 EXON CR43299
2R	8928878	2R_8928878_SNP [dm3] 2R_13041373_SNP [dm6]	T	A	3.256e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	16223459	X_16223459_SNP [dm3] X_16329426_SNP [dm6]	A	T	3.258e^-4	0.907	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA
X	11390328	X_11390328_SNP [dm3] X_11496295_SNP [dm6]	T	G	3.259e^-4	0.907	INTRON Drak	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19713312	2R_19713312_SNP [dm3] 2R_23825789_SNP [dm6]	G	T	3.266e^-4	0.907	UPSTREAM CG4763 INTRON CG5549
2L	10941314	2L_10941314_SNP [dm3] 2L_10941314_SNP [dm6]	C	G	3.274e^-4	0.907	INTRON dpr2
3L	4942326	3L_4942326_SNP [dm3] 3L_4942326_SNP [dm6]	C	T	3.275e^-4	0.907	INTRON Con
2R	16322426	2R_16322426_SNP [dm3] 2R_20434921_SNP [dm6]	G	C	3.277e^-4	0.907	INTRON CG12484
3R	18507462	3R_18507462_SNP [dm3] 3R_22681740_SNP [dm6]	A	T	3.278e^-4	0.907	UTR_3_PRIME CG45058	TF binding site mE1_TFBS_cad
3L	6599615	3L_6599615_SNP [dm3] 3L_6606515_SNP [dm6]	G	A	3.278e^-4	0.907	NON_SYNONYMOUS_CODING CG8368 UPSTREAM zpg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	9657618	3R_9657618_SNP [dm3] 3R_13831896_SNP [dm6]	A	T	3.284e^-4	0.907	INTERGENIC
2R	10629995	2R_10629995_SNP [dm3] 2R_14742490_SNP [dm6]	C	G	3.292e^-4	0.907	SYNONYMOUS_CODING CG12858
3R	21027952	3R_21027952_SNP [dm3] 3R_25202230_SNP [dm6]	G	T	3.295e^-4	0.907	INTRON CG13654 & 1 other
3L	8978827	3L_8978827_SNP [dm3] 3L_8985727_SNP [dm6]	T	C	3.298e^-4	0.907	START_GAINED Galk UTR_5_PRIME Galk UPSTREAM Galk & 1 other INTRON Galk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_Ubx
2L	5611928	2L_5611928_SNP [dm3] 2L_5611928_SNP [dm6]	C	A	3.298e^-4	0.907	INTRON CG14010
2R	17727879	2R_17727879_SNP [dm3] 2R_21840374_SNP [dm6]	G	T	3.301e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	8445760	3L_8445760_SNP [dm3] 3L_8452660_SNP [dm6]	G	C	3.305e^-4	0.907	INTRON Gug	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	2746278	2L_2746278_SNP [dm3] 2L_2746278_SNP [dm6]	G	A	3.309e^-4	0.907	SYNONYMOUS_CODING Cwc25 DOWNSTREAM Pgk	TF binding site mE1_TFBS_sens
2L	20493952	2L_20493952_SNP [dm3] 2L_20493952_SNP [dm6]	C	A	3.313e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18335911	3L_18335911_SNP [dm3] 3L_18342811_SNP [dm6]	T	C	3.319e^-4	0.907	INTERGENIC
2L	19330798	2L_19330798_SNP [dm3] 2L_19330798_SNP [dm6]	C	T	3.319e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9255302	2R_9255302_SNP [dm3] 2R_13367797_SNP [dm6]	C	G	3.325e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4803632	2L_4803632_SNP [dm3] 2L_4803632_SNP [dm6]	A	C	3.331e^-4	0.907	INTERGENIC
2L	12701923	2L_12701923_SNP [dm3] 2L_12701923_SNP [dm6]	C	T	3.346e^-4	0.907	SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	12701936	2L_12701936_SNP [dm3] 2L_12701936_SNP [dm6]	G	C	3.346e^-4	0.907	NON_SYNONYMOUS_CODING CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	10462436	3L_10462436_SNP [dm3] 3L_10469336_SNP [dm6]	A	C	3.346e^-4	0.907	DOWNSTREAM S-Lap3 INTERGENIC
2L	9493851	2L_9493851_SNP [dm3] 2L_9493851_SNP [dm6]	C	T	3.346e^-4	0.907	INTRON Gdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	8875924	3L_8875924_SNP [dm3] 3L_8882824_SNP [dm6]	G	C	3.349e^-4	0.907	INTRON dally
3R	13477474	3R_13477474_SNP [dm3] 3R_17651752_SNP [dm6]	G	C	3.350e^-4	0.907	DOWNSTREAM CR45223 INTRON CG14322
2L	1177527	2L_1177527_SNP [dm3] 2L_1177527_SNP [dm6]	C	A	3.356e^-4	0.907	UTR_3_PRIME CG4887 UPSTREAM CG4896 DOWNSTREAM CG4887	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26975414	3R_26975414_SNP [dm3] 3R_31149692_SNP [dm6]	G	T	3.361e^-4	0.907	INTRON Gycbeta100B
2L	16864485	2L_16864485_SNP [dm3] 2L_16864485_SNP [dm6]	A	G	3.397e^-4	0.907	INTERGENIC
2L	9426473	2L_9426473_SNP [dm3] 2L_9426473_SNP [dm6]	A	T	3.404e^-4	0.907	UPSTREAM Fbp2 DOWNSTREAM Mco1 INTERGENIC
3R	21561193	3R_21561193_SNP [dm3] 3R_25735471_SNP [dm6]	T	A	3.414e^-4	0.907	INTRON LpR2	TF binding site mE1_TFBS_Trl
X	14810452	X_14810452_SNP [dm3] X_14916419_SNP [dm6]	C	T	3.419e^-4	0.907	DOWNSTREAM Eo INTRON Flo2
3R	13691912	3R_13691912_SNP [dm3] 3R_17866190_SNP [dm6]	C	T	3.422e^-4	0.907	SYNONYMOUS_CODING tinc
2L	4076132	2L_4076132_SNP [dm3] 2L_4076132_SNP [dm6]	C	A	3.425e^-4	0.907	UPSTREAM CR44984 INTRON ed
X	10431632	X_10431632_SNP [dm3] X_10537599_SNP [dm6]	A	G	3.426e^-4	0.907	INTRON spri	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	16078103	X_16078103_SNP [dm3] X_16184070_SNP [dm6]	A	T	3.429e^-4	0.907	INTERGENIC
3R	3902465	3R_3902465_SNP [dm3] 3R_8076743_SNP [dm6]	G	T	3.431e^-4	0.907	INTRON mAChR-B
3L	7625135	3L_7625135_SNP [dm3] 3L_7632035_SNP [dm6]	T	C	3.446e^-4	0.907	INTRON CG33275
3R	9087131	3R_9087131_SNP [dm3] 3R_13261409_SNP [dm6]	G	T	3.460e^-4	0.907	INTRON CG11686
3L	12829510	3L_12829510_SNP [dm3] 3L_12836410_SNP [dm6]	C	G	3.460e^-4	0.907	INTRON CG10960	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	10137631	3L_10137631_SNP [dm3] 3L_10144531_SNP [dm6]	C	T	3.471e^-4	0.907	INTERGENIC
2R	17173164	2R_17173164_SNP [dm3] 2R_21285659_SNP [dm6]	G	A	3.487e^-4	0.907	UTR_3_PRIME MFS16 & 1 other
3L	14624776	3L_14624776_SNP [dm3] 3L_14631676_SNP [dm6]	T	C	3.489e^-4	0.907	SYNONYMOUS_CODING RecQ5 UPSTREAM dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	14624797	3L_14624797_SNP [dm3] 3L_14631697_SNP [dm6]	A	G	3.489e^-4	0.907	SYNONYMOUS_CODING RecQ5 UPSTREAM dlp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2R	17326825	2R_17326825_SNP [dm3] 2R_21439320_SNP [dm6]	A	G	3.489e^-4	0.907	INTRON Sdc
2R	17326828	2R_17326828_SNP [dm3] 2R_21439323_SNP [dm6]	G	A	3.489e^-4	0.907	INTRON Sdc
2L	8292678	2L_8292678_SNP [dm3] 2L_8292678_SNP [dm6]	T	C	3.489e^-4	0.907	INTRON Btk29A	TF binding site mE1_TFBS_cnc
2L	12718363	2L_12718363_SNP [dm3] 2L_12718363_SNP [dm6]	G	A	3.498e^-4	0.907	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
2R	8928864	2R_8928864_SNP [dm3] 2R_13041359_SNP [dm6]	G	C	3.508e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da transposable element FlyBase
2L	14708931	2L_14708931_SNP [dm3] 2L_14708931_SNP [dm6]	T	G	3.511e^-4	0.907	INTERGENIC
X	15558821	X_15558821_SNP [dm3] X_15664788_SNP [dm6]	C	T	3.516e^-4	0.907	INTRON CR43299 EXON CR43299
3R	21738590	3R_21738590_SNP [dm3] 3R_25912868_SNP [dm6]	A	T	3.517e^-4	0.907	UTR_3_PRIME CG42235 INTRON CG42235
2L	17318929	2L_17318929_SNP [dm3] 2L_17318929_SNP [dm6]	T	C	3.524e^-4	0.907	DOWNSTREAM CR45696 INTERGENIC
3L	10872812	3L_10872812_SNP [dm3] 3L_10879712_SNP [dm6]	G	A	3.541e^-4	0.907	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418 DOWNSTREAM CG6409	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	16668248	X_16668248_INS [dm3] X_16774215_INS [dm6]	G	GTATG	3.542e^-4	0.907	INTRON if	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19006739	X_19006739_SNP [dm3] X_19112706_SNP [dm6]	A	C	3.563e^-4	0.907	INTERGENIC
2R	16272696	2R_16272696_SNP [dm3] 2R_20385191_SNP [dm6]	C	T	3.584e^-4	0.907	INTERGENIC
3R	13642070	3R_13642070_SNP [dm3] 3R_17816348_SNP [dm6]	C	A	3.596e^-4	0.907	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12839221	2L_12839221_SNP [dm3] 2L_12839221_SNP [dm6]	G	A	3.605e^-4	0.907	INTERGENIC
2L	11289424	2L_11289424_SNP [dm3] 2L_11289424_SNP [dm6]	A	T	3.617e^-4	0.907	INTERGENIC
2L	9461249	2L_9461249_SNP [dm3] 2L_9461249_SNP [dm6]	C	G	3.618e^-4	0.907	SYNONYMOUS_CODING numb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17433764	2R_17433764_SNP [dm3] 2R_21546259_SNP [dm6]	G	A	3.627e^-4	0.907	UPSTREAM Egfr INTRON Egfr	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_Trl
3L	7760430	3L_7760430_SNP [dm3] 3L_7767330_SNP [dm6]	T	C	3.627e^-4	0.907	UTR_3_PRIME CG32371 UPSTREAM Clk INTRON Clk
2R	12059902	2R_12059902_SNP [dm3] 2R_16172397_SNP [dm6]	G	A	3.642e^-4	0.907	SYNONYMOUS_CODING Ptp52F	TF binding site mE1_TFBS_cad
3R	20310720	3R_20310720_SNP [dm3] 3R_24484998_SNP [dm6]	T	C	3.656e^-4	0.907	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7219285	3L_7219285_SNP [dm3] 3L_7226185_SNP [dm6]	C	T	3.657e^-4	0.907	INTERGENIC
3L	3930694	3L_3930694_INS [dm3] 3L_3930694_INS [dm6]	A	ATA	3.657e^-4	0.907	INTRON Eip63F-1
3L	11590854	3L_11590854_SNP [dm3] 3L_11597754_SNP [dm6]	G	A	3.661e^-4	0.907	INTRON CG7368
2L	3678317	2L_3678317_SNP [dm3] 2L_3678317_SNP [dm6]	G	T	3.663e^-4	0.907	INTRON CG34340
3L	5427623	3L_5427623_SNP [dm3] 3L_5434523_SNP [dm6]	C	T	3.670e^-4	0.907	INTRON CG34391
2L	6225517	2L_6225517_SNP [dm3] 2L_6225517_SNP [dm6]	T	A	3.679e^-4	0.907	NON_SYNONYMOUS_CODING Ugt37b1	TF binding site mE1_TFBS_sens
2L	14528807	2L_14528807_SNP [dm3] 2L_14528807_SNP [dm6]	G	T	3.680e^-4	0.907	INTERGENIC
X	16223468	X_16223468_INS [dm3] X_16329435_INS [dm6]	C	CAGAT	3.686e^-4	0.907	DOWNSTREAM CalpC INTRON CG9919	TF binding site mE1_TFBS_HSA
2L	16390716	2L_16390716_SNP [dm3] 2L_16390716_SNP [dm6]	C	A	3.690e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	6207478	X_6207478_SNP [dm3] X_6313445_SNP [dm6]	A	G	3.697e^-4	0.907	INTRON CG15894
2L	9316309	2L_9316309_SNP [dm3] 2L_9316309_SNP [dm6]	A	G	3.698e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	15316833	3L_15316833_DEL [dm3] 3L_15323733_DEL [dm6]	TT	T	3.708e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12701884	2L_12701884_SNP [dm3] 2L_12701884_SNP [dm6]	T	C	3.718e^-4	0.907	UTR_3_PRIME CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	9287715	3L_9287715_SNP [dm3] 3L_9294615_SNP [dm6]	G	A	3.719e^-4	0.907	INTERGENIC
3R	12799800	3R_12799800_SNP [dm3] 3R_16974078_SNP [dm6]	G	T	3.726e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
2R	7903556	2R_7903556_SNP [dm3] 2R_12016051_SNP [dm6]	G	A	3.727e^-4	0.907	DOWNSTREAM CR44306 INTRON otk	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_cnc
2R	11510514	2R_11510514_SNP [dm3] 2R_15623009_SNP [dm6]	T	C	3.730e^-4	0.907	INTRON CG42524	TF binding site mE1_TFBS_chinmo
X	18791208	X_18791208_SNP [dm3] X_18897175_SNP [dm6]	C	A	3.739e^-4	0.907	DOWNSTREAM CG7349 INTERGENIC
3L	14416166	3L_14416166_SNP [dm3] 3L_14423066_SNP [dm6]	T	G	3.743e^-4	0.907	INTRON bbg
X	16290036	X_16290036_SNP [dm3] X_16396003_SNP [dm6]	C	T	3.747e^-4	0.907	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_chinmo
X	12581720	X_12581720_SNP [dm3] X_12687687_SNP [dm6]	C	G	3.748e^-4	0.907	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13095011	2L_13095011_SNP [dm3] 2L_13095011_SNP [dm6]	G	A	3.753e^-4	0.907	INTERGENIC
3L	18388454	3L_18388454_SNP [dm3] 3L_18395354_SNP [dm6]	G	C	3.765e^-4	0.907	INTERGENIC
2L	9784432	2L_9784432_SNP [dm3] 2L_9784432_SNP [dm6]	A	T	3.766e^-4	0.907	INTRON IP3K1
2R	10519703	2R_10519703_SNP [dm3] 2R_14632198_SNP [dm6]	G	T	3.769e^-4	0.907	INTERGENIC
3L	11881840	3L_11881840_SNP [dm3] 3L_11888740_SNP [dm6]	A	G	3.773e^-4	0.907	SYNONYMOUS_CODING CG5897 INTRON CG44837	TF binding site mE1_TFBS_sens
2L	4767140	2L_4767140_DEL [dm3] 2L_4767140_DEL [dm6]	ACGGGTGTGA	A	3.773e^-4	0.907	INTRON CG15630
3L	4634667	3L_4634667_SNP [dm3] 3L_4634667_SNP [dm6]	T	C	3.784e^-4	0.907	SYNONYMOUS_CODING CG13716 INTRON axo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3297914	3R_3297914_SNP [dm3] 3R_7472192_SNP [dm6]	A	T	3.789e^-4	0.907	UPSTREAM tRNA:V3b:84Dc DOWNSTREAM CG1142 & 1 other INTERGENIC
3R	3465221	3R_3465221_SNP [dm3] 3R_7639499_SNP [dm6]	A	T	3.794e^-4	0.907	UPSTREAM CG34127 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	22470204	3R_22470204_SNP [dm3] 3R_26644482_SNP [dm6]	T	G	3.804e^-4	0.907	DOWNSTREAM beat-VII INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4008392	2R_4008392_SNP [dm3] 2R_8120887_SNP [dm6]	A	T	3.808e^-4	0.907	INTRON Asap	TF binding site BDTNP1_TFBS_dl
3L	2098839	3L_2098839_SNP [dm3] 3L_2098839_SNP [dm6]	A	G	3.813e^-4	0.907	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	8468204	3L_8468204_SNP [dm3] 3L_8475104_SNP [dm6]	T	C	3.816e^-4	0.907	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14708927	2L_14708927_SNP [dm3] 2L_14708927_SNP [dm6]	G	C	3.829e^-4	0.907	INTERGENIC
3L	6022449	3L_6022449_SNP [dm3] 3L_6029349_SNP [dm6]	C	T	3.832e^-4	0.907	INTERGENIC
3L	6022451	3L_6022451_SNP [dm3] 3L_6029351_SNP [dm6]	A	G	3.832e^-4	0.907	INTERGENIC
2L	5614939	2L_5614939_DEL [dm3] 2L_5614939_DEL [dm6]	TGCT	T	3.835e^-4	0.907	UPSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7421038	2L_7421038_SNP [dm3] 2L_7421038_SNP [dm6]	C	G	3.838e^-4	0.907	INTRON chm	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	15874057	2R_15874057_SNP [dm3] 2R_19986552_SNP [dm6]	A	T	3.841e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	18684465	3R_18684465_SNP [dm3] 3R_22858743_SNP [dm6]	A	G	3.846e^-4	0.907	INTERGENIC
X	8752468	X_8752468_SNP [dm3] X_8858435_SNP [dm6]	G	T	3.852e^-4	0.907	INTRON CG12075
2L	1156161	2L_1156161_SNP [dm3] 2L_1156161_SNP [dm6]	T	C	3.860e^-4	0.907	UTR_5_PRIME capt INTRON capt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	5573814	2L_5573814_SNP [dm3] 2L_5573814_SNP [dm6]	C	A	3.870e^-4	0.907	INTERGENIC
X	21181907	X_21181907_SNP [dm3] X_21310880_SNP [dm6]	T	A	3.875e^-4	0.907	INTRON CG1801	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4560883	3R_4560883_SNP [dm3] 3R_8735161_SNP [dm6]	T	A	3.879e^-4	0.907	DOWNSTREAM CG9801 INTRON CG8202
3R	7177822	3R_7177822_SNP [dm3] 3R_11352100_SNP [dm6]	C	T	3.882e^-4	0.907	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8399958	X_8399958_SNP [dm3] X_8505925_SNP [dm6]	A	G	3.887e^-4	0.907	INTRON CG33181
3L	13179278	3L_13179278_SNP [dm3] 3L_13186178_SNP [dm6]	G	T	3.893e^-4	0.907	INTERGENIC
3L	12701345	3L_12701345_SNP [dm3] 3L_12708245_SNP [dm6]	C	T	3.910e^-4	0.907	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6353109	2R_6353109_SNP [dm3] 2R_10465604_SNP [dm6]	A	T	3.914e^-4	0.907	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15107735	3L_15107735_SNP [dm3] 3L_15114635_SNP [dm6]	T	C	3.915e^-4	0.907	INTRON CG13458
3R	22049166	3R_22049166_SNP [dm3] 3R_26223444_SNP [dm6]	T	C	3.921e^-4	0.907	INTERGENIC
2L	17967359	2L_17967359_SNP [dm3] 2L_17967359_SNP [dm6]	G	A	3.929e^-4	0.907	SYNONYMOUS_CODING btv INTRON CG5674	TF binding site mE1_TFBS_HSA
3L	20869126	3L_20869126_SNP [dm3] 3L_20876026_SNP [dm6]	A	G	3.940e^-4	0.907	INTRON CG32432
2L	12839251	2L_12839251_SNP [dm3] 2L_12839251_SNP [dm6]	C	G	3.942e^-4	0.907	INTERGENIC
2L	14708898	2L_14708898_SNP [dm3] 2L_14708898_SNP [dm6]	G	T	3.943e^-4	0.907	INTERGENIC
3R	12799894	3R_12799894_SNP [dm3] 3R_16974172_SNP [dm6]	T	A	3.945e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	22684418	3R_22684418_SNP [dm3] 3R_26858696_SNP [dm6]	A	G	3.949e^-4	0.907	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	10032933	3L_10032933_SNP [dm3] 3L_10039833_SNP [dm6]	A	G	3.951e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
2R	4130564	2R_4130564_SNP [dm3] 2R_8243059_SNP [dm6]	T	G	3.956e^-4	0.907	EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13469550	3R_13469550_INS [dm3] 3R_17643828_INS [dm6]	A	AAAACCTACTGA...	3.959e^-4	0.907	UPSTREAM CG43175 INTRON CG43175
2L	17318927	2L_17318927_SNP [dm3] 2L_17318927_SNP [dm6]	A	T	3.961e^-4	0.907	DOWNSTREAM CR45696 INTERGENIC
X	15558851	X_15558851_SNP [dm3] X_15664818_SNP [dm6]	T	A	3.978e^-4	0.907	INTRON CR43299 EXON CR43299
3L	8466605	3L_8466605_SNP [dm3] 3L_8473505_SNP [dm6]	C	T	3.992e^-4	0.907	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	3016396	2L_3016396_SNP [dm3] 2L_3016396_SNP [dm6]	C	A	3.994e^-4	0.907	DOWNSTREAM CG17224 & 1 other INTERGENIC
3R	25696931	3R_25696931_SNP [dm3] 3R_29871209_SNP [dm6]	G	A	4.005e^-4	0.907	INTRON CG34133	TF binding site mE1_TFBS_cad
3R	20548380	3R_20548380_SNP [dm3] 3R_24722658_SNP [dm6]	T	G	4.015e^-4	0.907	INTRON tok
3L	2104017	3L_2104017_SNP [dm3] 3L_2104017_SNP [dm6]	G	C	4.025e^-4	0.907	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8392719	2R_8392719_SNP [dm3] 2R_12505214_SNP [dm6]	T	G	4.026e^-4	0.907	UPSTREAM fdl INTRON fdl
2R	13444785	2R_13444785_SNP [dm3] 2R_17557280_SNP [dm6]	C	T	4.031e^-4	0.907	SYNONYMOUS_CODING Klp54D DOWNSTREAM MESR4	TF binding site mE1_TFBS_chinmo
2R	11613415	2R_11613415_SNP [dm3] 2R_15725910_SNP [dm6]	T	C	4.031e^-4	0.907	INTERGENIC
3L	5427538	3L_5427538_SNP [dm3] 3L_5434438_SNP [dm6]	G	A	4.040e^-4	0.907	INTRON CG34391
3L	5427562	3L_5427562_SNP [dm3] 3L_5434462_SNP [dm6]	T	A	4.040e^-4	0.907	INTRON CG34391
3L	5427571	3L_5427571_SNP [dm3] 3L_5434471_SNP [dm6]	A	C	4.040e^-4	0.907	INTRON CG34391
3L	5427572	3L_5427572_SNP [dm3] 3L_5434472_SNP [dm6]	G	A	4.040e^-4	0.907	INTRON CG34391
2L	13094412	2L_13094412_SNP [dm3] 2L_13094412_SNP [dm6]	A	C	4.046e^-4	0.907	INTERGENIC
3R	4791822	3R_4791822_SNP [dm3] 3R_8966100_SNP [dm6]	G	C	4.052e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9119738	2R_9119738_SNP [dm3] 2R_13232233_SNP [dm6]	T	C	4.073e^-4	0.907	SYNONYMOUS_CODING CG4670 DOWNSTREAM fsd	TF binding site mE1_TFBS_cad
2L	14973527	2L_14973527_SNP [dm3] 2L_14973527_SNP [dm6]	A	G	4.078e^-4	0.907	UPSTREAM CR45331 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8600664	3L_8600664_SNP [dm3] 3L_8607564_SNP [dm6]	T	C	4.081e^-4	0.907	INTRON CG6282
2L	3015210	2L_3015210_SNP [dm3] 2L_3015210_SNP [dm6]	C	T	4.082e^-4	0.907	SYNONYMOUS_CODING CG17265	TF binding site BDTNP1_TFBS_twi
2R	8729544	2R_8729544_SNP [dm3] 2R_12842039_SNP [dm6]	A	G	4.092e^-4	0.907	SYNONYMOUS_CODING Cyp9h1 UPSTREAM Or49b
2L	2319801	2L_2319801_SNP [dm3] 2L_2319801_SNP [dm6]	C	T	4.096e^-4	0.907	INTRON CG9967 & 1 other
3L	1394321	3L_1394321_SNP [dm3] 3L_1394321_SNP [dm6]	T	C	4.109e^-4	0.907	INTRON Ptp61F
2L	20792805	2L_20792805_SNP [dm3] 2L_20792805_SNP [dm6]	C	T	4.123e^-4	0.907	INTRON vari	TF binding site mE1_TFBS_Trl
2L	13155384	2L_13155384_SNP [dm3] 2L_13155384_SNP [dm6]	T	C	4.126e^-4	0.907	INTERGENIC
X	9614131	X_9614131_SNP [dm3] X_9720098_SNP [dm6]	T	C	4.132e^-4	0.907	INTERGENIC
2L	9904799	2L_9904799_DEL [dm3] 2L_9904799_DEL [dm6]	TT	T	4.134e^-4	0.907	INTRON CG13124
2L	14270991	2L_14270991_SNP [dm3] 2L_14270991_SNP [dm6]	C	T	4.136e^-4	0.907	INTRON wb
3L	12078311	3L_12078311_SNP [dm3] 3L_12085211_SNP [dm6]	T	C	4.137e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_kn
3L	3865047	3L_3865047_SNP [dm3] 3L_3865047_SNP [dm6]	T	A	4.137e^-4	0.907	UPSTREAM CR45379 INTERGENIC
2R	17263767	2R_17263767_SNP [dm3] 2R_21376262_SNP [dm6]	C	G	4.144e^-4	0.907	INTRON cv-2	TF binding site mE1_TFBS_chinmo
2R	16317510	2R_16317510_SNP [dm3] 2R_20430005_SNP [dm6]	G	A	4.145e^-4	0.907	INTRON CG12484
2L	9545040	2L_9545040_SNP [dm3] 2L_9545040_SNP [dm6]	G	T	4.147e^-4	0.907	UPSTREAM CG13114 DOWNSTREAM CG13113 INTERGENIC
3R	26288483	3R_26288483_SNP [dm3] 3R_30462761_SNP [dm6]	T	C	4.150e^-4	0.907	INTRON CDase
3L	7143080	3L_7143080_SNP [dm3] 3L_7149980_SNP [dm6]	C	T	4.150e^-4	0.907	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	20493962	2L_20493962_SNP [dm3] 2L_20493962_SNP [dm6]	A	G	4.163e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	12796798	3R_12796798_SNP [dm3] 3R_16971076_SNP [dm6]	C	A	4.180e^-4	0.907	INTRON Abd-B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	3419448	2R_3419448_SNP [dm3] 2R_7531943_SNP [dm6]	T	G	4.181e^-4	0.907	INTRON Drat	TF binding site BDTNP1_TFBS_dl
2R	9075860	2R_9075860_SNP [dm3] 2R_13188355_SNP [dm6]	C	A	4.181e^-4	0.907	INTRON seq & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	8982140	3R_8982140_SNP [dm3] 3R_13156418_SNP [dm6]	G	T	4.183e^-4	0.907	UPSTREAM 2mit & 1 other INTRON timeout	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	9856255	X_9856255_SNP [dm3] X_9962222_SNP [dm6]	A	G	4.188e^-4	0.907	INTERGENIC
2L	3021449	2L_3021449_DEL [dm3] 2L_3021449_DEL [dm6]	TT	T	4.192e^-4	0.907	UTR_3_PRIME CG17264 & 1 other
2L	7446970	2L_7446970_SNP [dm3] 2L_7446970_SNP [dm6]	G	A	4.199e^-4	0.907	INTRON santa-maria
3L	11252075	3L_11252075_SNP [dm3] 3L_11258975_SNP [dm6]	G	A	4.203e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4714427	3L_4714427_INS [dm3] 3L_4714427_INS [dm6]	T	TCCAC	4.203e^-4	0.907	INTRON RhoGEF64C
2L	16922681	2L_16922681_SNP [dm3] 2L_16922681_SNP [dm6]	T	C	4.204e^-4	0.907	INTERGENIC
2R	10997088	2R_10997088_SNP [dm3] 2R_15109583_SNP [dm6]	T	A	4.204e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	19540927	2R_19540927_SNP [dm3] 2R_23653404_SNP [dm6]	G	A	4.204e^-4	0.907	INTRON retn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	18512742	X_18512742_SNP [dm3] X_18618709_SNP [dm6]	G	A	4.209e^-4	0.907	INTERGENIC
2L	11150009	2L_11150009_SNP [dm3] 2L_11150009_SNP [dm6]	G	T	4.212e^-4	0.907	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	14857655	X_14857655_SNP [dm3] X_14963622_SNP [dm6]	G	T	4.230e^-4	0.907	INTRON eag
2R	10818415	2R_10818415_SNP [dm3] 2R_14930910_SNP [dm6]	A	C	4.236e^-4	0.907	INTRON CG10253
3L	3995214	3L_3995214_SNP [dm3] 3L_3995214_SNP [dm6]	T	G	4.242e^-4	0.907	INTERGENIC
2R	6381735	2R_6381735_SNP [dm3] 2R_10494230_SNP [dm6]	T	C	4.247e^-4	0.907	INTRON lola
3L	15211483	3L_15211483_SNP [dm3] 3L_15218383_SNP [dm6]	A	T	4.248e^-4	0.907	INTERGENIC
3R	26975426	3R_26975426_SNP [dm3] 3R_31149704_SNP [dm6]	C	A	4.254e^-4	0.907	INTRON Gycbeta100B
2L	19628945	2L_19628945_SNP [dm3] 2L_19628945_SNP [dm6]	C	T	4.254e^-4	0.907	INTRON Lar
2R	10810886	2R_10810886_SNP [dm3] 2R_14923381_SNP [dm6]	G	C	4.256e^-4	0.907	INTRON CG10249
3L	10872518	3L_10872518_SNP [dm3] 3L_10879418_SNP [dm6]	A	T	4.270e^-4	0.907	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17935336	3R_17935336_SNP [dm3] 3R_22109614_SNP [dm6]	G	T	4.276e^-4	0.907	INTRON CG5778	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	10751728	2R_10751728_SNP [dm3] 2R_14864223_SNP [dm6]	C	T	4.277e^-4	0.907	SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9983305	2L_9983305_SNP [dm3] 2L_9983305_SNP [dm6]	T	C	4.283e^-4	0.907	DOWNSTREAM CR13130 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8722667	2R_8722667_SNP [dm3] 2R_12835162_SNP [dm6]	G	C	4.283e^-4	0.907	INTERGENIC
3L	7572541	3L_7572541_SNP [dm3] 3L_7579441_SNP [dm6]	G	A	4.284e^-4	0.907	INTERGENIC
2L	9544875	2L_9544875_SNP [dm3] 2L_9544875_SNP [dm6]	T	A	4.287e^-4	0.907	UTR_3_PRIME CG13113 UPSTREAM CG13114
2R	9292136	2R_9292136_SNP [dm3] 2R_13404631_SNP [dm6]	A	G	4.290e^-4	0.907	INTERGENIC
2L	19330145	2L_19330145_SNP [dm3] 2L_19330145_SNP [dm6]	G	A	4.291e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20822118	2L_20822118_SNP [dm3] 2L_20822118_SNP [dm6]	T	C	4.297e^-4	0.907	UPSTREAM CG9331 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10222184	3L_10222184_SNP [dm3] 3L_10229084_SNP [dm6]	T	G	4.312e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	8292776	2L_8292776_INS [dm3] 2L_8292776_INS [dm6]	T	TT	4.318e^-4	0.907	INTRON Btk29A	TF binding site mE1_TFBS_cnc
2R	10796712	2R_10796712_SNP [dm3] 2R_14909207_SNP [dm6]	G	T	4.322e^-4	0.907	INTRON CG10249
2L	15026372	2L_15026372_SNP [dm3] 2L_15026372_SNP [dm6]	T	A	4.324e^-4	0.907	UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
2R	6353179	2R_6353179_SNP [dm3] 2R_10465674_SNP [dm6]	G	A	4.343e^-4	0.907	UTR_3_PRIME Galphao DOWNSTREAM Caf1-105	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11490743	2L_11490743_SNP [dm3] 2L_11490743_SNP [dm6]	A	G	4.344e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
X	9686401	X_9686401_SNP [dm3] X_9792368_SNP [dm6]	T	A	4.347e^-4	0.907	INTRON CG32698
3L	14975681	3L_14975681_SNP [dm3] 3L_14982581_SNP [dm6]	A	G	4.355e^-4	0.907	UPSTREAM CG5114 DOWNSTREAM CG3349 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6213672	2L_6213672_SNP [dm3] 2L_6213672_SNP [dm6]	A	G	4.356e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
2R	17945745	2R_17945745_SNP [dm3] 2R_22058240_SNP [dm6]	G	A	4.358e^-4	0.907	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
X	12546705	X_12546705_SNP [dm3] X_12652672_SNP [dm6]	A	C	4.365e^-4	0.907	SPLICE_SITE_REGION Tomosyn UPSTREAM CkIalpha INTRON Tomosyn	TF binding site BDTNP1_TFBS_dl
2L	13093863	2L_13093863_SNP [dm3] 2L_13093863_SNP [dm6]	A	T	4.373e^-4	0.907	INTERGENIC
X	13644548	X_13644548_SNP [dm3] X_13750515_SNP [dm6]	T	C	4.380e^-4	0.907	INTRON Pdcd4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4361994	2L_4361994_SNP [dm3] 2L_4361994_SNP [dm6]	A	G	4.385e^-4	0.907	UTR_5_PRIME Traf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	743469	2L_743469_SNP [dm3] 2L_743469_SNP [dm6]	C	G	4.390e^-4	0.907	UTR_5_PRIME Eaat2
2R	18555498	2R_18555498_SNP [dm3] 2R_22667993_SNP [dm6]	T	C	4.397e^-4	0.907	NON_SYNONYMOUS_CODING CG30269 DOWNSTREAM CG30273	TF binding site mE1_TFBS_cad
2L	2747283	2L_2747283_SNP [dm3] 2L_2747283_SNP [dm6]	G	T	4.407e^-4	0.907	DOWNSTREAM Cwc25 INTRON Pgk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3802763	X_3802763_SNP [dm3] X_3908730_SNP [dm6]	C	A	4.408e^-4	0.907	INTRON CG42541
2L	20493961	2L_20493961_SNP [dm3] 2L_20493961_SNP [dm6]	G	T	4.415e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	575897	3L_575897_SNP [dm3] 3L_575897_SNP [dm6]	T	C	4.437e^-4	0.907	UTR_3_PRIME hipk
2R	16245227	2R_16245227_SNP [dm3] 2R_20357722_SNP [dm6]	G	C	4.444e^-4	0.907	INTERGENIC
3L	10230626	3L_10230626_SNP [dm3] 3L_10237526_SNP [dm6]	C	T	4.447e^-4	0.907	DOWNSTREAM CR44542 INTERGENIC
3L	17166549	3L_17166549_DEL [dm3] 3L_17173449_DEL [dm6]	AGGATAACATTATT...	A	4.469e^-4	0.907	INTRON Rbp6
2R	10816477	2R_10816477_SNP [dm3] 2R_14928972_SNP [dm6]	C	T	4.469e^-4	0.907	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	5102232	2L_5102232_SNP [dm3] 2L_5102232_SNP [dm6]	G	T	4.473e^-4	0.907	INTRON Msp300
2L	9425970	2L_9425970_SNP [dm3] 2L_9425970_SNP [dm6]	C	T	4.478e^-4	0.907	NON_SYNONYMOUS_CODING Mco1 UPSTREAM Fbp2
2L	14428432	2L_14428432_SNP [dm3] 2L_14428432_SNP [dm6]	C	G	4.483e^-4	0.907	DOWNSTREAM CR44732 INTERGENIC	TF binding site mE1_TFBS_cnc
X	21102288	X_21102288_SNP [dm3] X_21231261_SNP [dm6]	T	A	4.485e^-4	0.907	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2L	10097485	2L_10097485_SNP [dm3] 2L_10097485_SNP [dm6]	A	G	4.510e^-4	0.907	INTRON CG34109 & 1 other
2R	17028304	2R_17028304_SNP [dm3] 2R_21140799_SNP [dm6]	G	A	4.513e^-4	0.907	INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	7730864	3L_7730864_SNP [dm3] 3L_7737764_SNP [dm6]	G	T	4.523e^-4	0.907	INTRON CG32373 & 1 other
3L	13491323	3L_13491323_SNP [dm3] 3L_13498223_SNP [dm6]	A	C	4.523e^-4	0.907	INTRON Tgi
2R	5310269	2R_5310269_SNP [dm3] 2R_9422764_SNP [dm6]	A	G	4.525e^-4	0.907	SYNONYMOUS_CODING CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5310277	2R_5310277_SNP [dm3] 2R_9422772_SNP [dm6]	A	G	4.525e^-4	0.907	NON_SYNONYMOUS_CODING CG13955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10556637	2R_10556637_SNP [dm3] 2R_14669132_SNP [dm6]	C	T	4.540e^-4	0.907	INTRON CG12866	TF binding site BDTNP1_TFBS_hb
X	9856276	X_9856276_INS [dm3] X_9962243_INS [dm6]	A	ACA	4.570e^-4	0.907	INTERGENIC
X	9324840	X_9324840_SNP [dm3] X_9430807_SNP [dm6]	A	G	4.573e^-4	0.907	INTRON mgl
2R	6560473	2R_6560473_SNP [dm3] 2R_10672968_SNP [dm6]	A	T	4.583e^-4	0.907	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	14893799	X_14893799_SNP [dm3] X_14999766_SNP [dm6]	A	C	4.592e^-4	0.907	DOWNSTREAM eag INTRON eag
2L	12839310	2L_12839310_SNP [dm3] 2L_12839310_SNP [dm6]	G	T	4.592e^-4	0.907	INTERGENIC
3L	4019420	3L_4019420_SNP [dm3] 3L_4019420_SNP [dm6]	C	T	4.601e^-4	0.907	SYNONYMOUS_CODING fd64A	TF binding site BDTNP1_TFBS_twi
2R	8729541	2R_8729541_SNP [dm3] 2R_12842036_SNP [dm6]	G	A	4.615e^-4	0.907	SYNONYMOUS_CODING Cyp9h1 UPSTREAM Or49b
3L	10433787	3L_10433787_SNP [dm3] 3L_10440687_SNP [dm6]	C	G	4.615e^-4	0.907	INTERGENIC
2L	2155857	2L_2155857_SNP [dm3] 2L_2155857_SNP [dm6]	A	G	4.619e^-4	0.907	SYNONYMOUS_CODING CG15382 DOWNSTREAM AIF & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7752392	3L_7752392_SNP [dm3] 3L_7759292_SNP [dm6]	G	A	4.622e^-4	0.907	DOWNSTREAM CG32373 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	2918023	3L_2918023_SNP [dm3] 3L_2918023_SNP [dm6]	T	C	4.633e^-4	0.907	INTRON Shab
3R	24633650	3R_24633650_SNP [dm3] 3R_28807928_SNP [dm6]	C	A	4.647e^-4	0.907	DOWNSTREAM wdn & 1 other INTERGENIC
2L	14265267	2L_14265267_SNP [dm3] 2L_14265267_SNP [dm6]	G	A	4.649e^-4	0.907	INTRON wb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	10197429	3L_10197429_SNP [dm3] 3L_10204329_SNP [dm6]	G	A	4.673e^-4	0.907	INTERGENIC
X	12224892	X_12224892_SNP [dm3] X_12330859_SNP [dm6]	T	C	4.678e^-4	0.907	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2L	14887275	2L_14887275_SNP [dm3] 2L_14887275_SNP [dm6]	G	A	4.685e^-4	0.907	INTERGENIC
2L	11288197	2L_11288197_SNP [dm3] 2L_11288197_SNP [dm6]	G	A	4.686e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11288199	2L_11288199_SNP [dm3] 2L_11288199_SNP [dm6]	A	C	4.686e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8465909	3L_8465909_SNP [dm3] 3L_8472809_SNP [dm6]	G	A	4.692e^-4	0.907	UTR_3_PRIME CG43163 DOWNSTREAM Gug
2R	15150952	2R_15150952_SNP [dm3] 2R_19263447_SNP [dm6]	A	G	4.693e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
X	19634226	X_19634226_SNP [dm3] X_19740193_SNP [dm6]	G	T	4.695e^-4	0.907	UTR_3_PRIME CG14234 DOWNSTREAM CoVIb
3R	389796	3R_389796_SNP [dm3] 3R_4564074_SNP [dm6]	T	C	4.696e^-4	0.907	INTERGENIC
3R	2616163	3R_2616163_SNP [dm3] 3R_6790441_SNP [dm6]	G	C	4.696e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc
X	8501997	X_8501997_SNP [dm3] X_8607964_SNP [dm6]	A	G	4.696e^-4	0.907	INTERGENIC
2L	11481647	2L_11481647_SNP [dm3] 2L_11481647_SNP [dm6]	C	T	4.701e^-4	0.907	INTERGENIC
2L	11481649	2L_11481649_SNP [dm3] 2L_11481649_SNP [dm6]	C	T	4.701e^-4	0.907	INTERGENIC
3L	8466644	3L_8466644_SNP [dm3] 3L_8473544_SNP [dm6]	A	G	4.704e^-4	0.907	SYNONYMOUS_CODING CG43163 DOWNSTREAM Gug	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8379087	2R_8379087_SNP [dm3] 2R_12491582_SNP [dm6]	G	T	4.708e^-4	0.907	UPSTREAM fdl INTRON fdl
2L	2770253	2L_2770253_SNP [dm3] 2L_2770253_SNP [dm6]	C	G	4.720e^-4	0.907	SPLICE_SITE_REGION CG2862 UTR_5_PRIME CG2862 UPSTREAM colt DOWNSTREAM CG15399 INTRON CG2862	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	2530313	2L_2530313_SNP [dm3] 2L_2530313_SNP [dm6]	C	A	4.726e^-4	0.907	INTERGENIC
2L	13155386	2L_13155386_SNP [dm3] 2L_13155386_SNP [dm6]	G	C	4.727e^-4	0.907	INTERGENIC
X	5600012	X_5600012_SNP [dm3] X_5705979_SNP [dm6]	A	C	4.728e^-4	0.907	INTRON CG4096
X	7533975	X_7533975_SNP [dm3] X_7639942_SNP [dm6]	C	T	4.728e^-4	0.907	INTRON ct
2L	15026329	2L_15026329_SNP [dm3] 2L_15026329_SNP [dm6]	C	G	4.736e^-4	0.907	SPLICE_SITE_REGION GABA-B-R1 UPSTREAM CG33310 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
2L	11849836	2L_11849836_SNP [dm3] 2L_11849836_SNP [dm6]	T	A	4.741e^-4	0.907	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
2L	11849848	2L_11849848_SNP [dm3] 2L_11849848_SNP [dm6]	A	T	4.741e^-4	0.907	UPSTREAM Mal-B2 DOWNSTREAM Mal-B1 INTRON Pde1c
3L	4749428	3L_4749428_SNP [dm3] 3L_4749428_SNP [dm6]	C	T	4.754e^-4	0.907	INTRON RhoGEF64C
2R	16062141	2R_16062141_SNP [dm3] 2R_20174636_SNP [dm6]	C	A	4.755e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10135758	3L_10135758_SNP [dm3] 3L_10142658_SNP [dm6]	A	T	4.760e^-4	0.907	INTERGENIC
X	17912720	X_17912720_SNP [dm3] X_18018687_SNP [dm6]	G	C	4.764e^-4	0.907	INTRON Sh
2L	9316313	2L_9316313_SNP [dm3] 2L_9316313_SNP [dm6]	A	G	4.764e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	10479761	2L_10479761_SNP [dm3] 2L_10479761_SNP [dm6]	C	T	4.772e^-4	0.907	INTRON RluA-2	TF binding site BDTNP1_TFBS_dl
2L	20928034	2L_20928034_SNP [dm3] 2L_20928034_SNP [dm6]	A	G	4.786e^-4	0.907	UPSTREAM CR33319 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12701883	2L_12701883_SNP [dm3] 2L_12701883_SNP [dm6]	G	T	4.787e^-4	0.907	UTR_3_PRIME CG5776	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	16664062	3L_16664062_SNP [dm3] 3L_16670962_SNP [dm6]	C	T	4.790e^-4	0.907	UPSTREAM CR45241 DOWNSTREAM zetaCOP INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7811028	3L_7811028_SNP [dm3] 3L_7817928_SNP [dm6]	C	T	4.790e^-4	0.907	INTRON Pdp1	TF binding site mE1_TFBS_cad
3L	2830143	3L_2830143_SNP [dm3] 3L_2830143_SNP [dm6]	C	A	4.798e^-4	0.907	INTRON CG43444
2R	16872916	2R_16872916_SNP [dm3] 2R_20985411_SNP [dm6]	A	T	4.805e^-4	0.907	SPLICE_SITE_REGION CG15651 INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10045808	2L_10045808_SNP [dm3] 2L_10045808_SNP [dm6]	A	G	4.807e^-4	0.907	INTERGENIC
3L	19205261	3L_19205261_SNP [dm3] 3L_19212161_SNP [dm6]	T	A	4.808e^-4	0.907	INTRON fz2
X	8934965	X_8934965_SNP [dm3] X_9040932_SNP [dm6]	T	A	4.818e^-4	0.907	INTRON CR43836 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_Trl
2L	4803869	2L_4803869_SNP [dm3] 2L_4803869_SNP [dm6]	T	C	4.823e^-4	0.907	INTERGENIC
3L	9772861	3L_9772861_SNP [dm3] 3L_9779761_SNP [dm6]	C	T	4.830e^-4	0.907	SYNONYMOUS_CODING CG8177
2L	12839295	2L_12839295_INS [dm3] 2L_12839295_INS [dm6]	T	TG	4.830e^-4	0.907	INTERGENIC
2L	12839298	2L_12839298_SNP [dm3] 2L_12839298_SNP [dm6]	A	T	4.830e^-4	0.907	INTERGENIC
2L	12839299	2L_12839299_DEL [dm3] 2L_12839299_DEL [dm6]	AAT	A	4.830e^-4	0.907	INTERGENIC
3R	17557991	3R_17557991_SNP [dm3] 3R_21732269_SNP [dm6]	C	T	4.839e^-4	0.907	INTERGENIC
X	9688230	X_9688230_SNP [dm3] X_9794197_SNP [dm6]	T	G	4.843e^-4	0.907	UPSTREAM CG32698 INTRON CG32698
X	14854160	X_14854160_SNP [dm3] X_14960127_SNP [dm6]	T	C	4.846e^-4	0.907	INTRON eag	TF binding site mE1_TFBS_bab1
2L	10314949	2L_10314949_SNP [dm3] 2L_10314949_SNP [dm6]	C	A	4.848e^-4	0.907	NON_SYNONYMOUS_CODING CG4972 UPSTREAM CG5384	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	10013685	2R_10013685_SNP [dm3] 2R_14126180_SNP [dm6]	C	T	4.853e^-4	0.907	INTRON Prosap
2R	18484453	2R_18484453_INS [dm3] 2R_22596948_INS [dm6]	G	TAACGCAAA	4.860e^-4	0.907	UPSTREAM CG4269 DOWNSTREAM CG3927 EXON CR45328
2L	16651680	2L_16651680_SNP [dm3] 2L_16651680_SNP [dm6]	C	G	4.861e^-4	0.907	INTRON CG42389
2R	20757841	2R_20757841_SNP [dm3] 2R_24870318_SNP [dm6]	A	G	4.861e^-4	0.907	NON_SYNONYMOUS_CODING Atf-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	7456217	2L_7456217_SNP [dm3] 2L_7456217_SNP [dm6]	T	C	4.867e^-4	0.907	SYNONYMOUS_CODING Gr28b INTRON Gr28b	TF binding site mE1_TFBS_HSA
2L	7427677	2L_7427677_SNP [dm3] 2L_7427677_SNP [dm6]	C	G	4.868e^-4	0.907	UPSTREAM CG5261 INTRON CG5261	TF binding site BDTNP1_TFBS_dl
3L	5427576	3L_5427576_SNP [dm3] 3L_5434476_SNP [dm6]	C	T	4.870e^-4	0.907	INTRON CG34391
X	15544880	X_15544880_SNP [dm3] X_15650847_SNP [dm6]	C	T	4.877e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20824746	2L_20824746_INS [dm3] 2L_20824746_INS [dm6]	A	AACAGATA	4.891e^-4	0.907	UPSTREAM CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8920904	2R_8920904_SNP [dm3] 2R_13033399_SNP [dm6]	C	T	4.899e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	10751261	X_10751261_SNP [dm3] X_10857228_SNP [dm6]	G	C	4.908e^-4	0.907	NON_SYNONYMOUS_CODING sofe UPSTREAM CG2186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	12145243	3L_12145243_SNP [dm3] 3L_12152143_SNP [dm6]	T	G	4.908e^-4	0.907	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_HSA
2L	15970757	2L_15970757_SNP [dm3] 2L_15970757_SNP [dm6]	A	G	4.910e^-4	0.907	INTERGENIC
3L	9176318	3L_9176318_SNP [dm3] 3L_9183218_SNP [dm6]	A	T	4.923e^-4	0.907	INTERGENIC
X	16102319	X_16102319_SNP [dm3] X_16208286_SNP [dm6]	A	C	4.935e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_sens
3L	7724293	3L_7724293_SNP [dm3] 3L_7731193_SNP [dm6]	G	C	4.948e^-4	0.907	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11936813	2L_11936813_SNP [dm3] 2L_11936813_SNP [dm6]	G	A	4.952e^-4	0.907	NON_SYNONYMOUS_CODING Or33b
2L	16427304	2L_16427304_SNP [dm3] 2L_16427304_SNP [dm6]	T	G	4.954e^-4	0.907	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	20119905	2R_20119905_SNP [dm3] 2R_24232382_SNP [dm6]	G	A	4.962e^-4	0.907	INTERGENIC
X	10346265	X_10346265_SNP [dm3] X_10452232_SNP [dm6]	T	C	4.964e^-4	0.907	NON_SYNONYMOUS_CODING CG32683
2R	16501268	2R_16501268_SNP [dm3] 2R_20613763_SNP [dm6]	T	A	4.966e^-4	0.907	INTRON Hil
3L	18388834	3L_18388834_SNP [dm3] 3L_18395734_SNP [dm6]	G	A	4.967e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	7446939	2L_7446939_SNP [dm3] 2L_7446939_SNP [dm6]	A	C	4.975e^-4	0.907	SPLICE_SITE_REGION santa-maria INTRON santa-maria
2L	6694038	2L_6694038_SNP [dm3] 2L_6694038_SNP [dm6]	T	A	4.975e^-4	0.907	INTRON Tsp
2R	11108787	2R_11108787_SNP [dm3] 2R_15221282_SNP [dm6]	C	A	5.005e^-4	0.907	UPSTREAM Hex-C INTRON CG8079
3L	18269714	3L_18269714_SNP [dm3] 3L_18276614_SNP [dm6]	C	A	5.027e^-4	0.907	INTERGENIC
3L	2830247	3L_2830247_SNP [dm3] 3L_2830247_SNP [dm6]	T	A	5.028e^-4	0.907	INTRON CG43444
2R	17318824	2R_17318824_SNP [dm3] 2R_21431319_SNP [dm6]	T	C	5.033e^-4	0.907	INTRON Sdc
X	8742141	X_8742141_SNP [dm3] X_8848108_SNP [dm6]	G	A	5.038e^-4	0.907	INTRON CG12075
3R	25019738	3R_25019738_SNP [dm3] 3R_29194016_SNP [dm6]	A	G	5.046e^-4	0.907	INTRON CG14509
3L	12432285	3L_12432285_SNP [dm3] 3L_12439185_SNP [dm6]	C	T	5.061e^-4	0.907	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	882092	2L_882092_SNP [dm3] 2L_882092_SNP [dm6]	T	C	5.069e^-4	0.907	NON_SYNONYMOUS_CODING CG15824	TF binding site mE1_TFBS_cad
2R	18808217	2R_18808217_SNP [dm3] 2R_22920694_SNP [dm6]	A	T	5.071e^-4	0.907	INTRON Nup214
2L	7958139	2L_7958139_SNP [dm3] 2L_7958139_SNP [dm6]	A	T	5.071e^-4	0.907	INTRON Snoo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11108806	2R_11108806_SNP [dm3] 2R_15221301_SNP [dm6]	G	T	5.080e^-4	0.907	UPSTREAM Hex-C INTRON CG8079
2L	11088406	2L_11088406_SNP [dm3] 2L_11088406_SNP [dm6]	G	A	5.085e^-4	0.907	SYNONYMOUS_CODING CG16854
3L	1013742	3L_1013742_SNP [dm3] 3L_1013742_SNP [dm6]	T	A	5.090e^-4	0.907	INTRON trio
3L	16329229	3L_16329229_SNP [dm3] 3L_16336129_SNP [dm6]	G	C	5.097e^-4	0.907	INTERGENIC
2R	13129807	2R_13129807_SNP [dm3] 2R_17242302_SNP [dm6]	T	G	5.109e^-4	0.907	INTRON mbl
2R	13129808	2R_13129808_SNP [dm3] 2R_17242303_SNP [dm6]	T	G	5.109e^-4	0.907	INTRON mbl
2L	14519447	2L_14519447_SNP [dm3] 2L_14519447_SNP [dm6]	C	G	5.119e^-4	0.907	UPSTREAM tRNA:G3:35Bc INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_Kr
2R	4130978	2R_4130978_SNP [dm3] 2R_8243473_SNP [dm6]	A	T	5.122e^-4	0.907	EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4130996	2R_4130996_SNP [dm3] 2R_8243491_SNP [dm6]	G	A	5.122e^-4	0.907	EXON CR44445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18393836	3L_18393836_SNP [dm3] 3L_18400736_SNP [dm6]	G	A	5.123e^-4	0.907	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2801614	3L_2801614_SNP [dm3] 3L_2801614_SNP [dm6]	G	A	5.123e^-4	0.907	INTRON CG43444
3R	16243005	3R_16243005_SNP [dm3] 3R_20417283_SNP [dm6]	C	T	5.123e^-4	0.907	INTRON Gfrl
3L	6558569	3L_6558569_SNP [dm3] 3L_6565469_SNP [dm6]	C	A	5.126e^-4	0.907	NON_SYNONYMOUS_CODING jv INTRON CG18769	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7143045	3L_7143045_SNP [dm3] 3L_7149945_SNP [dm6]	G	A	5.127e^-4	0.907	INTRON corn	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6441958	3L_6441958_SNP [dm3] 3L_6448858_SNP [dm6]	T	A	5.141e^-4	0.907	INTRON CG42747
2L	13541089	2L_13541089_SNP [dm3] 2L_13541089_SNP [dm6]	C	T	5.143e^-4	0.907	DOWNSTREAM CG9263 INTRON B4 & 1 other	TF binding site mE1_TFBS_HSA
X	5552065	X_5552065_SNP [dm3] X_5658032_SNP [dm6]	A	C	5.144e^-4	0.907	INTRON CG42265
X	5552066	X_5552066_SNP [dm3] X_5658033_SNP [dm6]	T	C	5.144e^-4	0.907	INTRON CG42265
2L	16923560	2L_16923560_SNP [dm3] 2L_16923560_SNP [dm6]	T	C	5.146e^-4	0.907	INTERGENIC
2R	9270798	2R_9270798_SNP [dm3] 2R_13383293_SNP [dm6]	T	G	5.165e^-4	0.907	INTERGENIC
2R	6465016	2R_6465016_SNP [dm3] 2R_10577511_SNP [dm6]	C	T	5.168e^-4	0.907	INTRON psq
2L	7446949	2L_7446949_SNP [dm3] 2L_7446949_SNP [dm6]	G	T	5.170e^-4	0.907	INTRON santa-maria
2R	7026655	2R_7026655_SNP [dm3] 2R_11139150_SNP [dm6]	C	T	5.171e^-4	0.907	SYNONYMOUS_CODING BBS4 DOWNSTREAM CG13229
3L	998804	3L_998804_DEL [dm3] 3L_998804_DEL [dm6]	ATTAGACAATTTTGA...	A	5.171e^-4	0.907	SPLICE_SITE_REGION trio INTRON trio
2L	9917146	2L_9917146_SNP [dm3] 2L_9917146_SNP [dm6]	C	T	5.171e^-4	0.907	UTR_3_PRIME yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
X	21102281	X_21102281_SNP [dm3] X_21231254_SNP [dm6]	A	C	5.177e^-4	0.907	UPSTREAM tRNA:R:19F DOWNSTREAM tRNA:CR32518:Psi INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	7138444	3L_7138444_SNP [dm3] 3L_7145344_SNP [dm6]	G	A	5.178e^-4	0.907	SYNONYMOUS_CODING corn
X	20309647	X_20309647_SNP [dm3] X_20438620_SNP [dm6]	T	C	5.186e^-4	0.907	INTRON CG1695
X	21323282	X_21323282_SNP [dm3] X_21452255_SNP [dm6]	A	T	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323353	X_21323353_INS [dm3] X_21452326_INS [dm6]	CCGC	GGAACTATAA	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323363	X_21323363_SNP [dm3] X_21452336_SNP [dm6]	G	C	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323365	X_21323365_MNP [dm3] X_21452338_MNP [dm6]	TCTAC	CGAGA	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323375	X_21323375_SNP [dm3] X_21452348_SNP [dm6]	T	A	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323376	X_21323376_SNP [dm3] X_21452349_SNP [dm6]	T	C	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323383	X_21323383_MNP [dm3] X_21452356_MNP [dm6]	TCC	CAA	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323386	X_21323386_INS [dm3] X_21452359_INS [dm6]	A	ATTGTT	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323410	X_21323410_SNP [dm3] X_21452383_SNP [dm6]	A	C	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
X	21323482	X_21323482_SNP [dm3] X_21452455_SNP [dm6]	C	A	5.190e^-4	0.907	INTRON CG42343	transposable element FlyBase
3L	7098035	3L_7098035_SNP [dm3] 3L_7104935_SNP [dm6]	G	T	5.190e^-4	0.907	INTRON form3
3L	4950791	3L_4950791_SNP [dm3] 3L_4950791_SNP [dm6]	G	A	5.193e^-4	0.907	INTRON Con	TF binding site mE1_TFBS_chinmo
3R	2138425	3R_2138425_SNP [dm3] 3R_6312703_SNP [dm6]	T	C	5.199e^-4	0.907	INTRON Osi17	TF binding site mE1_TFBS_HSA
3L	9288540	3L_9288540_SNP [dm3] 3L_9295440_SNP [dm6]	G	C	5.201e^-4	0.907	INTERGENIC
X	9436962	X_9436962_SNP [dm3] X_9542929_SNP [dm6]	A	G	5.204e^-4	0.907	INTRON CG32700
2L	12547867	2L_12547867_SNP [dm3] 2L_12547867_SNP [dm6]	A	G	5.210e^-4	0.907	INTERGENIC
2R	8176149	2R_8176149_SNP [dm3] 2R_12288644_SNP [dm6]	A	G	5.216e^-4	0.907	INTRON CG42700
2R	12504959	2R_12504959_SNP [dm3] 2R_16617454_SNP [dm6]	T	G	5.218e^-4	0.907	UPSTREAM CG5065 INTRON CG5065
2L	5543890	2L_5543890_SNP [dm3] 2L_5543890_SNP [dm6]	G	A	5.223e^-4	0.907	INTRON Lam	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	13980535	3L_13980535_SNP [dm3] 3L_13987435_SNP [dm6]	T	C	5.224e^-4	0.907	UPSTREAM CG9040 DOWNSTREAM CG17362 INTRON CG17364
3R	26973314	3R_26973314_SNP [dm3] 3R_31147592_SNP [dm6]	C	T	5.225e^-4	0.907	INTRON Gycbeta100B
2R	10816406	2R_10816406_SNP [dm3] 2R_14928901_SNP [dm6]	T	A	5.237e^-4	0.907	UPSTREAM CG10249 DOWNSTREAM CG10253 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10032916	3L_10032916_SNP [dm3] 3L_10039816_SNP [dm6]	C	A	5.238e^-4	0.907	INTRON dpr6	TF binding site BDTNP1_TFBS_dl
3R	21229589	3R_21229589_SNP [dm3] 3R_25403867_SNP [dm6]	T	C	5.243e^-4	0.907	INTRON Fur1
2L	10604846	2L_10604846_SNP [dm3] 2L_10604846_SNP [dm6]	A	G	5.252e^-4	0.907	INTRON Trim9	TF binding site BDTNP1_TFBS_twi
2L	9507047	2L_9507047_SNP [dm3] 2L_9507047_SNP [dm6]	A	G	5.260e^-4	0.907	INTRON CG33298
2L	5473737	2L_5473737_SNP [dm3] 2L_5473737_SNP [dm6]	G	A	5.263e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	6560486	2R_6560486_INS [dm3] 2R_10672981_INS [dm6]	T	TATT	5.263e^-4	0.907	UPSTREAM stan INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16846871	2R_16846871_SNP [dm3] 2R_20959366_SNP [dm6]	A	T	5.264e^-4	0.907	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15230712	2R_15230712_SNP [dm3] 2R_19343207_SNP [dm6]	A	T	5.276e^-4	0.907	INTRON Rgk1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1020984	2L_1020984_SNP [dm3] 2L_1020984_SNP [dm6]	A	T	5.281e^-4	0.907	INTRON IA-2
2L	14270848	2L_14270848_SNP [dm3] 2L_14270848_SNP [dm6]	G	C	5.287e^-4	0.907	INTRON wb
2R	4393730	2R_4393730_SNP [dm3] 2R_8506225_SNP [dm6]	A	T	5.303e^-4	0.907	INTRON mtt
3L	4942231	3L_4942231_SNP [dm3] 3L_4942231_SNP [dm6]	T	C	5.304e^-4	0.907	INTRON Con
3L	15673523	3L_15673523_SNP [dm3] 3L_15680423_SNP [dm6]	C	T	5.316e^-4	0.907	NON_SYNONYMOUS_CODING CG7304	TF binding site mE1_TFBS_HSA
2R	7338954	2R_7338954_INS [dm3] 2R_11451449_INS [dm6]	A	ATTCAAA	5.322e^-4	0.907	UTR_3_PRIME qvr UPSTREAM E_Pc_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	7568789	X_7568789_SNP [dm3] X_7674756_SNP [dm6]	T	G	5.326e^-4	0.907	UTR_3_PRIME ct
2L	14193415	2L_14193415_SNP [dm3] 2L_14193415_SNP [dm6]	T	C	5.328e^-4	0.907	INTRON Dyrk2
3L	2097816	3L_2097816_SNP [dm3] 3L_2097816_SNP [dm6]	G	A	5.328e^-4	0.907	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	4840705	3L_4840705_SNP [dm3] 3L_4840705_SNP [dm6]	T	A	5.345e^-4	0.907	UPSTREAM CG13707 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3L	4940358	3L_4940358_SNP [dm3] 3L_4940358_SNP [dm6]	G	A	5.360e^-4	0.907	INTRON Con	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4516407	3L_4516407_SNP [dm3] 3L_4516407_SNP [dm6]	C	T	5.364e^-4	0.907	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10015564	2R_10015564_SNP [dm3] 2R_14128059_SNP [dm6]	G	A	5.370e^-4	0.907	INTRON Prosap
2L	1724859	2L_1724859_DEL [dm3] 2L_1724859_DEL [dm6]	TTGAACACCGTGTATATTCG...	T	5.370e^-4	0.907	UTR_3_PRIME Eno UPSTREAM Rim2 DOWNSTREAM Eno	TF binding site mE1_TFBS_Ubx
2L	9631907	2L_9631907_SNP [dm3] 2L_9631907_SNP [dm6]	G	A	5.382e^-4	0.907	INTERGENIC
2L	12416746	2L_12416746_SNP [dm3] 2L_12416746_SNP [dm6]	C	A	5.385e^-4	0.907	INTRON vir-1

By genomic position
Variant impact
Gene name

pc_Lactobacillaceae phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results