DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.317e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.09746
In_3R_Mo	0.06196

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1735 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	7221082	3L_7221082_SNP [dm3] 3L_7227982_SNP [dm6]	T	A	9.065e^-7	0.728	INTERGENIC
2R	14586562	2R_14586562_SNP [dm3] 2R_18699057_SNP [dm6]	G	T	9.180e^-7	0.728	INTRON Sik3
3L	3845577	3L_3845577_SNP [dm3] 3L_3845577_SNP [dm6]	G	A	2.611e^-6	0.728	UPSTREAM Awh INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3L	3846377	3L_3846377_SNP [dm3] 3L_3846377_SNP [dm6]	A	T	2.611e^-6	0.728	UTR_5_PRIME Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	20327414	2L_20327414_SNP [dm3] 2L_20327414_SNP [dm6]	A	C	2.655e^-6	0.728	INTRON spir
3L	11353261	3L_11353261_SNP [dm3] 3L_11360161_SNP [dm6]	T	C	3.099e^-6	0.728	INTERGENIC
3L	3850746	3L_3850746_SNP [dm3] 3L_3850746_SNP [dm6]	A	T	3.665e^-6	0.728	INTRON Awh
2L	20336420	2L_20336420_SNP [dm3] 2L_20336420_SNP [dm6]	G	A	4.605e^-6	0.728	INTRON spir
2L	20327422	2L_20327422_SNP [dm3] 2L_20327422_SNP [dm6]	T	C	4.662e^-6	0.728	INTRON spir
3L	3850776	3L_3850776_SNP [dm3] 3L_3850776_SNP [dm6]	G	T	5.252e^-6	0.728	INTRON Awh
2L	20327389	2L_20327389_SNP [dm3] 2L_20327389_SNP [dm6]	A	C	5.338e^-6	0.728	INTRON spir
2L	20328771	2L_20328771_SNP [dm3] 2L_20328771_SNP [dm6]	G	A	5.338e^-6	0.728	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	3850859	3L_3850859_SNP [dm3] 3L_3850859_SNP [dm6]	C	G	5.423e^-6	0.728	INTRON Awh
2L	20336245	2L_20336245_SNP [dm3] 2L_20336245_SNP [dm6]	G	A	5.480e^-6	0.728	INTRON spir
3L	3843493	3L_3843493_SNP [dm3] 3L_3843493_SNP [dm6]	T	C	6.423e^-6	0.784	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17162267	2R_17162267_SNP [dm3] 2R_21274762_SNP [dm6]	G	A	7.027e^-6	0.784	INTRON Rgk3
3L	7395670	3L_7395670_SNP [dm3] 3L_7402570_SNP [dm6]	C	A	7.770e^-6	0.784	SYNONYMOUS_CODING CG8560 DOWNSTREAM CG18417	TF binding site mE1_TFBS_HSA
3L	3850930	3L_3850930_SNP [dm3] 3L_3850930_SNP [dm6]	T	G	8.280e^-6	0.784	INTRON Awh
2R	12580261	2R_12580261_SNP [dm3] 2R_16692756_SNP [dm6]	G	A	8.415e^-6	0.784	NON_SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3L	7397462	3L_7397462_SNP [dm3] 3L_7404362_SNP [dm6]	A	C	9.222e^-6	0.784	UPSTREAM CG8560 INTERGENIC
3L	12173728	3L_12173728_SNP [dm3] 3L_12180628_SNP [dm6]	T	C	9.396e^-6	0.784	INTRON CAH2
3L	1607506	3L_1607506_SNP [dm3] 3L_1607506_SNP [dm6]	C	A	9.930e^-6	0.784	SYNONYMOUS_CODING CG33791 UTR_3_PRIME CG18170	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3533694	2R_3533694_SNP [dm3] 2R_7646189_SNP [dm6]	G	T	1.046e^-5	0.784	NON_SYNONYMOUS_CODING CG43340 INTRON CG43340
2L	20336415	2L_20336415_SNP [dm3] 2L_20336415_SNP [dm6]	C	G	1.062e^-5	0.784	INTRON spir
2L	4090261	2L_4090261_SNP [dm3] 2L_4090261_SNP [dm6]	T	C	1.134e^-5	0.784	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5211726	3L_5211726_SNP [dm3] 3L_5218626_SNP [dm6]	C	T	1.153e^-5	0.784	INTRON shep
2L	3239163	2L_3239163_SNP [dm3] 2L_3239163_SNP [dm6]	C	T	1.204e^-5	0.784	INTERGENIC
3L	7795479	3L_7795479_SNP [dm3] 3L_7802379_SNP [dm6]	C	T	1.214e^-5	0.784	INTRON CG32369
3L	5198319	3L_5198319_SNP [dm3] 3L_5205219_SNP [dm6]	C	T	1.223e^-5	0.784	INTRON shep
3R	14239453	3R_14239453_SNP [dm3] 3R_18413731_SNP [dm6]	T	G	1.298e^-5	0.805	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	11440754	2R_11440754_SNP [dm3] 2R_15553249_SNP [dm6]	C	G	1.424e^-5	0.838	INTERGENIC
3R	14239486	3R_14239486_INS [dm3] 3R_18413764_INS [dm6]	A	AGGATCT	1.540e^-5	0.838	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20328945	2L_20328945_SNP [dm3] 2L_20328945_SNP [dm6]	C	T	1.560e^-5	0.838	INTRON spir	TF binding site mE1_TFBS_inv
X	7989580	X_7989580_SNP [dm3] X_8095547_SNP [dm6]	A	T	1.588e^-5	0.838	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	1.676e^-5	0.838	INTRON spir
2R	4976769	2R_4976769_SNP [dm3] 2R_9089264_SNP [dm6]	C	A	1.785e^-5	0.838	DOWNSTREAM CG8080 INTRON Dbp45A
2L	16898786	2L_16898786_SNP [dm3] 2L_16898786_SNP [dm6]	T	A	1.828e^-5	0.838	NON_SYNONYMOUS_CODING CG31805 UTR_3_PRIME CG31805 INTRON tweek	TF binding site mE1_TFBS_sens
X	10797562	X_10797562_SNP [dm3] X_10903529_SNP [dm6]	G	A	1.933e^-5	0.838	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	3850491	3L_3850491_SNP [dm3] 3L_3850491_SNP [dm6]	T	A	1.934e^-5	0.838	INTRON Awh
X	22190223	X_22190223_SNP [dm3] X_22788387_SNP [dm6]	C	T	1.970e^-5	0.838	INTRON CR44997
2R	18889506	2R_18889506_SNP [dm3] 2R_23001983_SNP [dm6]	G	A	1.975e^-5	0.838	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	16793694	2L_16793694_SNP [dm3] 2L_16793694_SNP [dm6]	T	C	2.008e^-5	0.838	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
3L	7830614	3L_7830614_SNP [dm3] 3L_7837514_SNP [dm6]	A	T	2.009e^-5	0.838	INTRON Pdp1	regulatory region REDfly_CRMs
2L	20336492	2L_20336492_SNP [dm3] 2L_20336492_SNP [dm6]	G	C	2.042e^-5	0.838	SYNONYMOUS_CODING spir
2L	4091459	2L_4091459_SNP [dm3] 2L_4091459_SNP [dm6]	C	G	2.100e^-5	0.838	INTRON ed
2L	19341337	2L_19341337_SNP [dm3] 2L_19341337_SNP [dm6]	T	G	2.135e^-5	0.838	INTRON dnt	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4277814	3L_4277814_SNP [dm3] 3L_4277814_SNP [dm6]	T	G	2.142e^-5	0.838	UPSTREAM CG1311 DOWNSTREAM CG1273 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4277789	3L_4277789_SNP [dm3] 3L_4277789_SNP [dm6]	G	A	2.169e^-5	0.838	UPSTREAM CG1311 DOWNSTREAM CG1273 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	3850886	3L_3850886_SNP [dm3] 3L_3850886_SNP [dm6]	C	T	2.298e^-5	0.838	INTRON Awh
2R	18889510	2R_18889510_SNP [dm3] 2R_23001987_SNP [dm6]	C	A	2.317e^-5	0.838	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	11440746	2R_11440746_SNP [dm3] 2R_15553241_SNP [dm6]	C	G	2.338e^-5	0.838	INTERGENIC
X	20889395	X_20889395_INS [dm3] X_21018368_INS [dm6]	G	GC	2.386e^-5	0.838	INTERGENIC
X	16366183	X_16366183_SNP [dm3] X_16472150_SNP [dm6]	T	C	2.418e^-5	0.838	INTRON para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20331580	2L_20331580_SNP [dm3] 2L_20331580_SNP [dm6]	T	G	2.433e^-5	0.838	INTRON spir
3L	17567392	3L_17567392_SNP [dm3] 3L_17574292_SNP [dm6]	A	G	2.576e^-5	0.863	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17401022	3L_17401022_SNP [dm3] 3L_17407922_SNP [dm6]	A	G	2.681e^-5	0.863	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7830608	3L_7830608_SNP [dm3] 3L_7837508_SNP [dm6]	A	G	2.735e^-5	0.863	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7830606	3L_7830606_SNP [dm3] 3L_7837506_SNP [dm6]	G	A	2.736e^-5	0.863	INTRON Pdp1	regulatory region REDfly_CRMs
3L	3843983	3L_3843983_SNP [dm3] 3L_3843983_SNP [dm6]	T	G	2.770e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	14149277	2R_14149277_SNP [dm3] 2R_18261772_SNP [dm6]	T	A	2.870e^-5	0.863	INTERGENIC
2L	6157868	2L_6157868_SNP [dm3] 2L_6157868_SNP [dm6]	T	C	2.886e^-5	0.863	INTERGENIC
2L	4346097	2L_4346097_SNP [dm3] 2L_4346097_SNP [dm6]	G	A	2.899e^-5	0.863	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	22187737	X_22187737_SNP [dm3] X_22785901_SNP [dm6]	T	A	2.927e^-5	0.863	INTRON CR44997
2L	10926938	2L_10926938_SNP [dm3] 2L_10926938_SNP [dm6]	C	T	3.001e^-5	0.863	INTRON dpr2
X	5391821	X_5391821_SNP [dm3] X_5497788_SNP [dm6]	A	G	3.015e^-5	0.863	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	11924209	2L_11924209_SNP [dm3] 2L_11924209_SNP [dm6]	G	T	3.124e^-5	0.877	INTRON Pde1c
3L	1043215	3L_1043215_SNP [dm3] 3L_1043215_SNP [dm6]	C	G	3.157e^-5	0.877	INTRON bab1
X	20847874	X_20847874_SNP [dm3] X_20976847_SNP [dm6]	T	C	3.246e^-5	0.888	INTERGENIC
3L	7824958	3L_7824958_DEL [dm3] 3L_7831858_DEL [dm6]	TT	T	3.395e^-5	0.905	INTRON Pdp1
2L	20331677	2L_20331677_SNP [dm3] 2L_20331677_SNP [dm6]	A	G	3.404e^-5	0.905	INTRON spir
X	3875217	X_3875217_SNP [dm3] X_3981184_SNP [dm6]	G	C	3.534e^-5	0.914	INTERGENIC
2L	16794067	2L_16794067_SNP [dm3] 2L_16794067_SNP [dm6]	G	A	3.576e^-5	0.914	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13252246	2L_13252246_SNP [dm3] 2L_13252246_SNP [dm6]	T	C	3.587e^-5	0.914	NON_SYNONYMOUS_CODING CG31728
2L	20328737	2L_20328737_SNP [dm3] 2L_20328737_SNP [dm6]	C	T	3.716e^-5	0.916	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2865980	2L_2865980_SNP [dm3] 2L_2865980_SNP [dm6]	G	A	3.845e^-5	0.916	INTRON CG2991
3L	12173757	3L_12173757_SNP [dm3] 3L_12180657_SNP [dm6]	A	C	3.874e^-5	0.916	INTRON CAH2
3L	12173758	3L_12173758_SNP [dm3] 3L_12180658_SNP [dm6]	C	T	3.874e^-5	0.916	INTRON CAH2
3L	12173772	3L_12173772_SNP [dm3] 3L_12180672_SNP [dm6]	G	A	3.874e^-5	0.916	INTRON CAH2
3R	6343070	3R_6343070_SNP [dm3] 3R_10517348_SNP [dm6]	C	T	3.915e^-5	0.916	INTRON hth	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13160016	2L_13160016_SNP [dm3] 2L_13160016_SNP [dm6]	G	T	3.986e^-5	0.916	SYNONYMOUS_CODING Pk34A UPSTREAM CG5204	TF binding site mE1_TFBS_cad
X	8617865	X_8617865_SNP [dm3] X_8723832_SNP [dm6]	G	T	4.014e^-5	0.916	UPSTREAM CR43297 INTERGENIC
3L	7395815	3L_7395815_SNP [dm3] 3L_7402715_SNP [dm6]	C	A	4.035e^-5	0.916	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14951073	X_14951073_SNP [dm3] X_15057040_SNP [dm6]	T	C	4.180e^-5	0.931	SPLICE_SITE_REGION hiw INTRON hiw	TF binding site mE1_TFBS_chinmo
2R	14572427	2R_14572427_SNP [dm3] 2R_18684922_SNP [dm6]	G	C	4.201e^-5	0.931	SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
2L	20143400	2L_20143400_SNP [dm3] 2L_20143400_SNP [dm6]	T	C	4.304e^-5	0.935	INTERGENIC
2R	17162234	2R_17162234_SNP [dm3] 2R_21274729_SNP [dm6]	G	A	4.352e^-5	0.935	INTRON Rgk3
3R	23561416	3R_23561416_SNP [dm3] 3R_27735694_SNP [dm6]	A	G	4.566e^-5	0.935	UPSTREAM Ets98B INTERGENIC
2L	1024601	2L_1024601_SNP [dm3] 2L_1024601_SNP [dm6]	G	C	4.592e^-5	0.935	INTRON IA-2
3L	12173725	3L_12173725_SNP [dm3] 3L_12180625_SNP [dm6]	C	T	4.665e^-5	0.935	INTRON CAH2
3R	16817595	3R_16817595_SNP [dm3] 3R_20991873_SNP [dm6]	C	T	4.720e^-5	0.935	INTRON Calx	TF binding site mE1_TFBS_chinmo
2L	3238065	2L_3238065_INS [dm3] 2L_3238065_INS [dm6]	T	TTTT	4.906e^-5	0.935	INTERGENIC
X	5484220	X_5484220_SNP [dm3] X_5590187_SNP [dm6]	A	C	5.023e^-5	0.935	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7736799	3L_7736799_SNP [dm3] 3L_7743699_SNP [dm6]	T	C	5.048e^-5	0.935	UPSTREAM Snmp2 INTRON CG32373
2L	15950359	2L_15950359_SNP [dm3] 2L_15950359_SNP [dm6]	A	T	5.052e^-5	0.935	INTRON beat-Ib
2L	11660817	2L_11660817_SNP [dm3] 2L_11660817_SNP [dm6]	C	T	5.106e^-5	0.935	DOWNSTREAM CR44479 EXON CR44497
2L	11660965	2L_11660965_SNP [dm3] 2L_11660965_SNP [dm6]	T	A	5.106e^-5	0.935	UPSTREAM CR44497 DOWNSTREAM CR44479 INTERGENIC
X	7989741	X_7989741_SNP [dm3] X_8095708_SNP [dm6]	C	G	5.131e^-5	0.935	UTR_3_PRIME CG2258 DOWNSTREAM CG2258
2L	8098939	2L_8098939_SNP [dm3] 2L_8098939_SNP [dm6]	T	C	5.183e^-5	0.935	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3L	7830609	3L_7830609_SNP [dm3] 3L_7837509_SNP [dm6]	A	G	5.224e^-5	0.935	INTRON Pdp1	regulatory region REDfly_CRMs
X	3907145	X_3907145_SNP [dm3] X_4013112_SNP [dm6]	T	C	5.306e^-5	0.935	INTERGENIC
2R	2480850	2R_2480850_SNP [dm3] 2R_6593345_SNP [dm6]	G	T	5.306e^-5	0.935	INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3L	3835449	3L_3835449_SNP [dm3] 3L_3835449_SNP [dm6]	C	A	5.368e^-5	0.935	INTRON enc
3L	3842053	3L_3842053_SNP [dm3] 3L_3842053_SNP [dm6]	G	A	5.368e^-5	0.935	UTR_3_PRIME enc DOWNSTREAM enc
3R	14237782	3R_14237782_INS [dm3] 3R_18412060_INS [dm6]	G	GCGAA	5.390e^-5	0.935	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	14586529	2R_14586529_SNP [dm3] 2R_18699024_SNP [dm6]	C	A	5.431e^-5	0.935	INTRON Sik3
3L	16872502	3L_16872502_DEL [dm3] 3L_16879402_DEL [dm6]	AT	A	5.487e^-5	0.935	DOWNSTREAM CG32170 INTRON Lmpt
2L	2088018	2L_2088018_SNP [dm3] 2L_2088018_SNP [dm6]	G	A	5.570e^-5	0.935	INTRON dpr3
2R	5869867	2R_5869867_SNP [dm3] 2R_9982362_SNP [dm6]	G	A	5.630e^-5	0.935	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4432196	2R_4432196_SNP [dm3] 2R_8544691_SNP [dm6]	T	C	5.760e^-5	0.935	INTERGENIC
2R	4432233	2R_4432233_SNP [dm3] 2R_8544728_SNP [dm6]	C	T	5.760e^-5	0.935	INTERGENIC
3R	14234509	3R_14234509_SNP [dm3] 3R_18408787_SNP [dm6]	A	T	5.789e^-5	0.935	SYNONYMOUS_CODING CG31122	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18178254	X_18178254_SNP [dm3] X_18284221_SNP [dm6]	T	C	5.834e^-5	0.935	UTR_3_PRIME upd3
3L	16872533	3L_16872533_SNP [dm3] 3L_16879433_SNP [dm6]	C	T	5.835e^-5	0.935	DOWNSTREAM CG32170 INTRON Lmpt
X	4719426	X_4719426_SNP [dm3] X_4825393_SNP [dm6]	C	T	5.884e^-5	0.935	UPSTREAM CG12682 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4073253	2L_4073253_SNP [dm3] 2L_4073253_SNP [dm6]	C	G	5.963e^-5	0.935	INTRON ed
3L	14997665	3L_14997665_SNP [dm3] 3L_15004565_SNP [dm6]	T	A	6.003e^-5	0.935	INTRON Reck
X	22188536	X_22188536_SNP [dm3] X_22786700_SNP [dm6]	G	T	6.011e^-5	0.935	INTRON CR44997
3L	7827255	3L_7827255_SNP [dm3] 3L_7834155_SNP [dm6]	T	C	6.043e^-5	0.935	INTRON Pdp1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	9704740	2L_9704740_SNP [dm3] 2L_9704740_SNP [dm6]	T	G	6.081e^-5	0.935	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	22180406	X_22180406_SNP [dm3] X_22778570_SNP [dm6]	C	T	6.103e^-5	0.935	INTRON CR44997
3L	20040306	3L_20040306_SNP [dm3] 3L_20047206_SNP [dm6]	C	T	6.223e^-5	0.935	INTERGENIC
X	12256364	X_12256364_SNP [dm3] X_12362331_SNP [dm6]	C	G	6.235e^-5	0.935	INTERGENIC
2L	20328752	2L_20328752_DEL [dm3] 2L_20328752_DEL [dm6]	ACATG	A	6.320e^-5	0.935	INTRON spir	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	4091385	2L_4091385_SNP [dm3] 2L_4091385_SNP [dm6]	A	T	6.478e^-5	0.935	INTRON ed
2L	20334426	2L_20334426_SNP [dm3] 2L_20334426_SNP [dm6]	G	T	6.486e^-5	0.935	INTRON spir
X	3907137	X_3907137_SNP [dm3] X_4013104_SNP [dm6]	T	A	6.508e^-5	0.935	INTERGENIC
2L	4090249	2L_4090249_SNP [dm3] 2L_4090249_SNP [dm6]	T	C	6.512e^-5	0.935	INTRON ed	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4278980	3L_4278980_SNP [dm3] 3L_4278980_SNP [dm6]	G	T	6.677e^-5	0.935	NON_SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	20317865	2L_20317865_SNP [dm3] 2L_20317865_SNP [dm6]	A	G	6.799e^-5	0.935	UPSTREAM CR43606 INTRON spir
2L	8573793	2L_8573793_SNP [dm3] 2L_8573793_SNP [dm6]	G	C	6.878e^-5	0.935	INTRON Sema-1a
2L	4298509	2L_4298509_SNP [dm3] 2L_4298509_SNP [dm6]	G	T	6.879e^-5	0.935	INTRON tutl
2L	8573939	2L_8573939_SNP [dm3] 2L_8573939_SNP [dm6]	T	A	6.945e^-5	0.935	INTRON Sema-1a
2L	20329946	2L_20329946_SNP [dm3] 2L_20329946_SNP [dm6]	T	C	6.994e^-5	0.935	INTRON spir
X	22182305	X_22182305_SNP [dm3] X_22780469_SNP [dm6]	G	A	7.022e^-5	0.935	INTRON CR44997	transposable element FlyBase
X	22183490	X_22183490_SNP [dm3] X_22781654_SNP [dm6]	G	A	7.022e^-5	0.935	INTRON CR44997	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	22183592	X_22183592_SNP [dm3] X_22781756_SNP [dm6]	T	A	7.022e^-5	0.935	INTRON CR44997
X	22183963	X_22183963_SNP [dm3] X_22782127_SNP [dm6]	C	T	7.022e^-5	0.935	INTRON CR44997
X	22185616	X_22185616_SNP [dm3] X_22783780_SNP [dm6]	A	G	7.022e^-5	0.935	INTRON CR44997	transposable element FlyBase
X	22186793	X_22186793_SNP [dm3] X_22784957_SNP [dm6]	G	A	7.022e^-5	0.935	INTRON CR44997	transposable element FlyBase
2R	18889511	2R_18889511_SNP [dm3] 2R_23001988_SNP [dm6]	A	T	7.071e^-5	0.935	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18854567	2R_18854567_DEL [dm3] 2R_22967044_DEL [dm6]	GGAAGTG	G	7.089e^-5	0.935	INTERGENIC
X	22186636	X_22186636_DEL [dm3] X_22784800_DEL [dm6]	ACGGTTCATATAAACACGGG...	A	7.143e^-5	0.935	INTRON CR44997	transposable element FlyBase
2R	14220420	2R_14220420_SNP [dm3] 2R_18332915_SNP [dm6]	A	T	7.256e^-5	0.935	INTRON sbb
2L	20332617	2L_20332617_SNP [dm3] 2L_20332617_SNP [dm6]	C	T	7.276e^-5	0.935	INTRON spir	TF binding site BDTNP1_TFBS_da
3L	16724536	3L_16724536_SNP [dm3] 3L_16731436_SNP [dm6]	A	T	7.289e^-5	0.935	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	4091932	2L_4091932_SNP [dm3] 2L_4091932_SNP [dm6]	G	C	7.571e^-5	0.965	INTRON ed	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20847848	X_20847848_SNP [dm3] X_20976821_SNP [dm6]	T	C	7.830e^-5	0.978	INTERGENIC
3R	6762829	3R_6762829_SNP [dm3] 3R_10937107_SNP [dm6]	T	A	8.031e^-5	0.978	INTERGENIC
2L	11660694	2L_11660694_DEL [dm3] 2L_11660694_DEL [dm6]	GACTCTTTTAACG...	G	8.119e^-5	0.978	DOWNSTREAM CR44479 EXON CR44497
X	22180346	X_22180346_SNP [dm3] X_22778510_SNP [dm6]	G	A	8.171e^-5	0.978	INTRON CR44997
2L	20327567	2L_20327567_SNP [dm3] 2L_20327567_SNP [dm6]	C	T	8.265e^-5	0.978	INTRON spir
3L	2269552	3L_2269552_SNP [dm3] 3L_2269552_SNP [dm6]	A	T	8.289e^-5	0.978	NON_SYNONYMOUS_CODING CG32302 DOWNSTREAM obst-I & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	20790060	2L_20790060_SNP [dm3] 2L_20790060_SNP [dm6]	G	T	8.410e^-5	0.978	SPLICE_SITE_REGION vari DOWNSTREAM Pomp INTRON vari	TF binding site mE1_TFBS_sens
2L	15487192	2L_15487192_DEL [dm3] 2L_15487192_DEL [dm6]	ACCGA	A	8.503e^-5	0.978	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20325608	2L_20325608_SNP [dm3] 2L_20325608_SNP [dm6]	T	C	8.574e^-5	0.978	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	309334	3L_309334_SNP [dm3] 3L_309334_SNP [dm6]	G	A	8.630e^-5	0.978	SYNONYMOUS_CODING fwd
2L	1024665	2L_1024665_SNP [dm3] 2L_1024665_SNP [dm6]	C	G	8.717e^-5	0.978	INTRON IA-2
2L	20359648	2L_20359648_SNP [dm3] 2L_20359648_SNP [dm6]	G	A	8.784e^-5	0.978	DOWNSTREAM RtGEF INTRON RtGEF
2R	20080559	2R_20080559_SNP [dm3] 2R_24193036_SNP [dm6]	G	A	8.842e^-5	0.978	SYNONYMOUS_CODING ocm
2L	5559779	2L_5559779_SNP [dm3] 2L_5559779_SNP [dm6]	A	T	8.859e^-5	0.978	DOWNSTREAM GluRIIA INTRON GluRIIB	TF binding site mE1_TFBS_inv
X	18358953	X_18358953_SNP [dm3] X_18464920_SNP [dm6]	C	G	8.987e^-5	0.978	INTRON CG32547	TF binding site mE1_TFBS_chinmo
2L	3222269	2L_3222269_SNP [dm3] 2L_3222269_SNP [dm6]	C	A	8.988e^-5	0.978	INTERGENIC
4	121889	4_121889_SNP [dm3] 4_101263_SNP [dm6]	C	A	9.021e^-5	0.978	UTR_3_PRIME pan INTRON pan	transposable element FlyBase
2R	18889500	2R_18889500_SNP [dm3] 2R_23001977_SNP [dm6]	T	C	9.131e^-5	0.978	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1024651	2L_1024651_SNP [dm3] 2L_1024651_SNP [dm6]	G	T	9.152e^-5	0.978	INTRON IA-2
3R	2264922	3R_2264922_SNP [dm3] 3R_6439200_SNP [dm6]	C	T	9.191e^-5	0.978	INTRON gpp
3R	2273966	3R_2273966_SNP [dm3] 3R_6448244_SNP [dm6]	A	T	9.191e^-5	0.978	UTR_3_PRIME gpp DOWNSTREAM gpp	TF binding site mE1_TFBS_zfh1
3R	2282737	3R_2282737_SNP [dm3] 3R_6457015_SNP [dm6]	G	T	9.191e^-5	0.978	UPSTREAM Zif & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	2288776	3R_2288776_SNP [dm3] 3R_6463054_SNP [dm6]	C	A	9.191e^-5	0.978	INTERGENIC
X	22179596	X_22179596_SNP [dm3] X_22777760_SNP [dm6]	C	T	9.200e^-5	0.978	INTRON CR44997
X	22185682	X_22185682_DEL [dm3] X_22783846_DEL [dm6]	AATG	TCA	9.200e^-5	0.978	INTRON CR44997	transposable element FlyBase
X	22186666	X_22186666_DEL [dm3] X_22784830_DEL [dm6]	ACCCAATAAAAAAAATT...	A	9.200e^-5	0.978	INTRON CR44997	transposable element FlyBase
X	22190138	X_22190138_SNP [dm3] X_22788302_SNP [dm6]	A	T	9.200e^-5	0.978	INTRON CR44997
3R	14239542	3R_14239542_INS [dm3] 3R_18413820_INS [dm6]	C	CCATCAGAAAAGTAAACTAG...	9.259e^-5	0.978	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	2276781	3R_2276781_SNP [dm3] 3R_6451059_SNP [dm6]	G	A	9.368e^-5	0.978	UTR_3_PRIME CG9727 DOWNSTREAM CG9727	TF binding site mE1_TFBS_cad
3L	4722156	3L_4722156_SNP [dm3] 3L_4722156_SNP [dm6]	T	A	9.371e^-5	0.978	INTRON RhoGEF64C
X	6802078	X_6802078_SNP [dm3] X_6908045_SNP [dm6]	G	T	9.519e^-5	0.978	UPSTREAM CG14431 INTERGENIC
3R	2285727	3R_2285727_SNP [dm3] 3R_6460005_SNP [dm6]	T	C	9.570e^-5	0.978	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	14148044	2R_14148044_SNP [dm3] 2R_18260539_SNP [dm6]	T	C	9.573e^-5	0.978	INTERGENIC
X	20310981	X_20310981_SNP [dm3] X_20439954_SNP [dm6]	T	C	9.634e^-5	0.978	SYNONYMOUS_CODING CG1695	TF binding site mE1_TFBS_chinmo
X	20847674	X_20847674_SNP [dm3] X_20976647_SNP [dm6]	G	A	9.673e^-5	0.978	INTERGENIC
3L	7398749	3L_7398749_SNP [dm3] 3L_7405649_SNP [dm6]	A	G	9.683e^-5	0.978	UPSTREAM pncr015:3L INTERGENIC
3L	14665752	3L_14665752_SNP [dm3] 3L_14672652_SNP [dm6]	T	A	9.707e^-5	0.978	UPSTREAM ome & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	17330979	X_17330979_SNP [dm3] X_17436946_SNP [dm6]	T	A	9.914e^-5	0.978	INTRON CG12994
3L	15229451	3L_15229451_SNP [dm3] 3L_15236351_SNP [dm6]	G	A	1.002e^-4	0.978	SYNONYMOUS_CODING Tollo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens
3L	442004	3L_442004_SNP [dm3] 3L_442004_SNP [dm6]	G	A	1.003e^-4	0.978	UPSTREAM klar DOWNSTREAM klar INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_Trl
3R	6813369	3R_6813369_SNP [dm3] 3R_10987647_SNP [dm6]	G	A	1.006e^-4	0.978	INTRON CG34114
2L	20336161	2L_20336161_SNP [dm3] 2L_20336161_SNP [dm6]	G	T	1.006e^-4	0.978	INTRON spir
2L	16709884	2L_16709884_SNP [dm3] 2L_16709884_SNP [dm6]	A	T	1.013e^-4	0.978	INTRON CG31808
X	19240332	X_19240332_SNP [dm3] X_19346299_SNP [dm6]	G	A	1.017e^-4	0.978	INTRON nAChRalpha7
2R	19011413	2R_19011413_SNP [dm3] 2R_23123890_SNP [dm6]	A	G	1.018e^-4	0.978	DOWNSTREAM Klp59C INTERGENIC
3L	902610	3L_902610_SNP [dm3] 3L_902610_SNP [dm6]	A	T	1.024e^-4	0.978	UPSTREAM CG13905 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
3L	7395804	3L_7395804_SNP [dm3] 3L_7402704_SNP [dm6]	C	A	1.028e^-4	0.978	INTRON CG8560	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4279010	3L_4279010_SNP [dm3] 3L_4279010_SNP [dm6]	A	T	1.029e^-4	0.978	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18889461	2R_18889461_INS [dm3] 2R_23001938_INS [dm6]	A	ATTATTTC	1.031e^-4	0.978	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	22184410	X_22184410_SNP [dm3] X_22782574_SNP [dm6]	C	A	1.056e^-4	0.978	INTRON CR44997
X	22187761	X_22187761_SNP [dm3] X_22785925_SNP [dm6]	A	T	1.056e^-4	0.978	INTRON CR44997
2L	8731878	2L_8731878_SNP [dm3] 2L_8731878_SNP [dm6]	A	G	1.058e^-4	0.978	INTRON raw
2L	20258070	2L_20258070_SNP [dm3] 2L_20258070_SNP [dm6]	G	T	1.063e^-4	0.978	UPSTREAM CG17571 INTERGENIC
X	22178456	X_22178456_DEL [dm3] X_22776620_DEL [dm6]	TAGCAAAAACTCTGAAAAGA...	T	1.072e^-4	0.978	INTRON CR44997	TF binding site mE1_TFBS_HSA
2L	4280558	2L_4280558_SNP [dm3] 2L_4280558_SNP [dm6]	T	A	1.083e^-4	0.978	INTRON Art2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14950981	X_14950981_SNP [dm3] X_15056948_SNP [dm6]	G	C	1.084e^-4	0.978	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
2R	13216606	2R_13216606_SNP [dm3] 2R_17329101_SNP [dm6]	T	C	1.090e^-4	0.978	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13216612	2R_13216612_SNP [dm3] 2R_17329107_SNP [dm6]	A	C	1.090e^-4	0.978	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	14239414	3R_14239414_SNP [dm3] 3R_18413692_SNP [dm6]	C	T	1.092e^-4	0.978	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	22189759	X_22189759_SNP [dm3] X_22787923_SNP [dm6]	G	A	1.101e^-4	0.978	INTRON CR44997
3L	11361055	3L_11361055_SNP [dm3] 3L_11367955_SNP [dm6]	G	T	1.104e^-4	0.978	INTERGENIC
X	22192337	X_22192337_SNP [dm3] X_22790501_SNP [dm6]	C	G	1.105e^-4	0.978	INTRON CR44997
2L	8370098	2L_8370098_SNP [dm3] 2L_8370098_SNP [dm6]	A	T	1.117e^-4	0.978	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2R	13221603	2R_13221603_SNP [dm3] 2R_17334098_SNP [dm6]	G	A	1.119e^-4	0.978	INTRON mbl
2R	13221645	2R_13221645_SNP [dm3] 2R_17334140_SNP [dm6]	A	C	1.119e^-4	0.978	INTRON mbl
2R	13221650	2R_13221650_SNP [dm3] 2R_17334145_SNP [dm6]	C	G	1.119e^-4	0.978	INTRON mbl
X	22187750	X_22187750_SNP [dm3] X_22785914_SNP [dm6]	T	C	1.120e^-4	0.978	INTRON CR44997
3L	2000737	3L_2000737_SNP [dm3] 3L_2000737_SNP [dm6]	A	G	1.130e^-4	0.983	INTERGENIC
2L	17797068	2L_17797068_SNP [dm3] 2L_17797068_SNP [dm6]	T	A	1.152e^-4	0.996	INTRON CadN2
2R	17625177	2R_17625177_SNP [dm3] 2R_21737672_SNP [dm6]	G	A	1.156e^-4	0.996	INTERGENIC
2L	13263765	2L_13263765_SNP [dm3] 2L_13263765_SNP [dm6]	G	T	1.162e^-4	0.997	INTRON CG44085
2L	13223661	2L_13223661_SNP [dm3] 2L_13223661_SNP [dm6]	G	A	1.175e^-4	1	SYNONYMOUS_CODING CG16812 DOWNSTREAM CG15480	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1842338	2L_1842338_SNP [dm3] 2L_1842338_SNP [dm6]	A	T	1.177e^-4	1	INTRON wry
2R	13221670	2R_13221670_SNP [dm3] 2R_17334165_SNP [dm6]	T	C	1.185e^-4	1	INTRON mbl
3R	1293243	3R_1293243_SNP [dm3] 3R_5467521_SNP [dm6]	T	A	1.194e^-4	1	UPSTREAM CG12162 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	22191416	X_22191416_SNP [dm3] X_22789580_SNP [dm6]	T	A	1.207e^-4	1	INTRON CR44997
2R	18889540	2R_18889540_INS [dm3] 2R_23002017_INS [dm6]	C	CGAGC	1.213e^-4	1	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	4355518	2L_4355518_SNP [dm3] 2L_4355518_SNP [dm6]	C	A	1.226e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14239200	3R_14239200_SNP [dm3] 3R_18413478_SNP [dm6]	A	G	1.227e^-4	1	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	7387267	3L_7387267_SNP [dm3] 3L_7394167_SNP [dm6]	C	T	1.231e^-4	1	SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad
2R	9413193	2R_9413193_SNP [dm3] 2R_13525688_SNP [dm6]	T	C	1.242e^-4	1	SYNONYMOUS_CODING CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
2L	20334437	2L_20334437_SNP [dm3] 2L_20334437_SNP [dm6]	T	A	1.271e^-4	1	INTRON spir
X	22184614	X_22184614_INS [dm3] X_22782778_INS [dm6]	T	TT	1.272e^-4	1	INTRON CR44997
2L	4886327	2L_4886327_SNP [dm3] 2L_4886327_SNP [dm6]	A	T	1.277e^-4	1	DOWNSTREAM CG3008 INTERGENIC
2R	6460935	2R_6460935_SNP [dm3] 2R_10573430_SNP [dm6]	A	T	1.279e^-4	1	INTRON psq
2R	10238206	2R_10238206_SNP [dm3] 2R_14350701_SNP [dm6]	C	T	1.303e^-4	1	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7386979	3L_7386979_SNP [dm3] 3L_7393879_SNP [dm6]	G	C	1.312e^-4	1	NON_SYNONYMOUS_CODING CG8563	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20289140	2L_20289140_SNP [dm3] 2L_20289140_SNP [dm6]	A	G	1.312e^-4	1	INTERGENIC
2L	10049276	2L_10049276_SNP [dm3] 2L_10049276_SNP [dm6]	A	G	1.313e^-4	1	UPSTREAM CG33301 INTERGENIC
3L	5464417	3L_5464417_SNP [dm3] 3L_5471317_SNP [dm6]	A	G	1.314e^-4	1	INTERGENIC
3R	11409349	3R_11409349_SNP [dm3] 3R_15583627_SNP [dm6]	A	T	1.322e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7094529	3L_7094529_SNP [dm3] 3L_7101429_SNP [dm6]	C	T	1.326e^-4	1	INTRON form3
2L	1024594	2L_1024594_SNP [dm3] 2L_1024594_SNP [dm6]	T	C	1.337e^-4	1	INTRON IA-2
2L	1024627	2L_1024627_SNP [dm3] 2L_1024627_SNP [dm6]	T	A	1.337e^-4	1	INTRON IA-2
2L	6493301	2L_6493301_SNP [dm3] 2L_6493301_SNP [dm6]	C	T	1.342e^-4	1	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9413251	2R_9413251_SNP [dm3] 2R_13525746_SNP [dm6]	G	A	1.349e^-4	1	NON_SYNONYMOUS_CODING CG13332 INTRON Vmat	TF binding site mE1_TFBS_cad
2L	20325605	2L_20325605_SNP [dm3] 2L_20325605_SNP [dm6]	T	C	1.357e^-4	1	INTRON spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8371319	2L_8371319_INS [dm3] 2L_8371319_INS [dm6]	A	ATCTA	1.362e^-4	1	UPSTREAM CR45341 INTRON CG17292
X	14258363	X_14258363_SNP [dm3] X_14364330_SNP [dm6]	T	C	1.364e^-4	1	INTRON dpr8
2L	20337369	2L_20337369_SNP [dm3] 2L_20337369_SNP [dm6]	C	G	1.372e^-4	1	INTRON spir
2L	20337414	2L_20337414_SNP [dm3] 2L_20337414_SNP [dm6]	G	A	1.372e^-4	1	INTRON spir
3L	7094540	3L_7094540_SNP [dm3] 3L_7101440_SNP [dm6]	A	G	1.373e^-4	1	INTRON form3
3L	7830558	3L_7830558_SNP [dm3] 3L_7837458_SNP [dm6]	T	G	1.376e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3L	15634248	3L_15634248_MNP [dm3] 3L_15641148_MNP [dm6]	CCA	TTT	1.389e^-4	1	INTRON comm3
2R	2570058	2R_2570058_SNP [dm3] 2R_6682553_SNP [dm6]	C	T	1.392e^-4	1	UPSTREAM CG15909 DOWNSTREAM CR44164 INTRON CG9422 EXON CR44165
3L	13582601	3L_13582601_SNP [dm3] 3L_13589501_SNP [dm6]	A	G	1.399e^-4	1	INTRON bru-3
2R	10251238	2R_10251238_SNP [dm3] 2R_14363733_SNP [dm6]	C	T	1.400e^-4	1	SYNONYMOUS_CODING Tfb1 DOWNSTREAM Arc2	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	13258341	2L_13258341_SNP [dm3] 2L_13258341_SNP [dm6]	C	A	1.418e^-4	1	UTR_3_PRIME CG31851 DOWNSTREAM CG31728 & 2 others
2L	16282513	2L_16282513_SNP [dm3] 2L_16282513_SNP [dm6]	G	A	1.422e^-4	1	INTRON crp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	6320142	2L_6320142_SNP [dm3] 2L_6320142_SNP [dm6]	G	A	1.425e^-4	1	INTRON Ddr
3L	10581592	3L_10581592_SNP [dm3] 3L_10588492_SNP [dm6]	T	A	1.428e^-4	1	INTRON A2bp1
X	22178186	X_22178186_INS [dm3] X_22776350_INS [dm6]	A	AA	1.435e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15634238	3L_15634238_SNP [dm3] 3L_15641138_SNP [dm6]	G	A	1.449e^-4	1	INTRON comm3
X	22195731	X_22195731_SNP [dm3] X_22793895_SNP [dm6]	T	G	1.463e^-4	1	INTRON CR44997
X	22196841	X_22196841_SNP [dm3] X_22795005_SNP [dm6]	A	T	1.467e^-4	1	INTRON CR44997	transposable element FlyBase
2L	13078752	2L_13078752_SNP [dm3] 2L_13078752_SNP [dm6]	C	T	1.472e^-4	1	INTERGENIC
2R	8120683	2R_8120683_DEL [dm3] 2R_12233178_DEL [dm6]	AA	A	1.472e^-4	1	DOWNSTREAM CR44313 INTERGENIC
X	22190221	X_22190221_SNP [dm3] X_22788385_SNP [dm6]	C	T	1.478e^-4	1	INTRON CR44997
2L	20322205	2L_20322205_SNP [dm3] 2L_20322205_SNP [dm6]	A	T	1.480e^-4	1	INTRON spir	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1842287	2L_1842287_DEL [dm3] 2L_1842287_DEL [dm6]	TTTT	T	1.485e^-4	1	INTRON wry
2L	8574676	2L_8574676_DEL [dm3] 2L_8574676_DEL [dm6]	GTGCGGTA	G	1.507e^-4	1	INTRON Sema-1a
2L	8574684	2L_8574684_INS [dm3] 2L_8574684_INS [dm6]	G	GCT	1.507e^-4	1	INTRON Sema-1a
3R	13974089	3R_13974089_SNP [dm3] 3R_18148367_SNP [dm6]	T	A	1.508e^-4	1	INTERGENIC
3R	20022978	3R_20022978_SNP [dm3] 3R_24197256_SNP [dm6]	C	T	1.513e^-4	1	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
3R	13775555	3R_13775555_SNP [dm3] 3R_17949833_SNP [dm6]	T	A	1.520e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	5464439	3L_5464439_SNP [dm3] 3L_5471339_SNP [dm6]	T	A	1.542e^-4	1	INTERGENIC
3L	5464445	3L_5464445_SNP [dm3] 3L_5471345_SNP [dm6]	T	C	1.542e^-4	1	INTERGENIC
2L	1024608	2L_1024608_SNP [dm3] 2L_1024608_SNP [dm6]	C	T	1.543e^-4	1	INTRON IA-2
3R	23874172	3R_23874172_SNP [dm3] 3R_28048450_SNP [dm6]	T	C	1.548e^-4	1	INTRON CG34362
X	17349448	X_17349448_INS [dm3] X_17455415_INS [dm6]	T	TT	1.550e^-4	1	DOWNSTREAM CG43658 INTERGENIC
X	10808055	X_10808055_SNP [dm3] X_10914022_SNP [dm6]	G	C	1.562e^-4	1	INTRON CG43901
X	22178252	X_22178252_DEL [dm3] X_22776416_DEL [dm6]	TA	T	1.568e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	6762864	3R_6762864_SNP [dm3] 3R_10937142_SNP [dm6]	G	A	1.575e^-4	1	INTERGENIC
2L	14250311	2L_14250311_SNP [dm3] 2L_14250311_SNP [dm6]	T	C	1.586e^-4	1	INTERGENIC
2L	7922201	2L_7922201_SNP [dm3] 2L_7922201_SNP [dm6]	A	T	1.615e^-4	1	INTRON Snoo
2L	7922249	2L_7922249_SNP [dm3] 2L_7922249_SNP [dm6]	G	A	1.630e^-4	1	INTRON Snoo
3L	4852528	3L_4852528_SNP [dm3] 3L_4852528_SNP [dm6]	A	G	1.636e^-4	1	UPSTREAM CG32237 INTERGENIC
2R	17188582	2R_17188582_SNP [dm3] 2R_21301077_SNP [dm6]	A	T	1.638e^-4	1	UPSTREAM CG42672 INTRON CG42672
X	22178173	X_22178173_DEL [dm3] X_22776337_DEL [dm6]	AATATAAATA	A	1.644e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7094587	3L_7094587_SNP [dm3] 3L_7101487_SNP [dm6]	C	G	1.648e^-4	1	INTRON form3
3L	3854865	3L_3854865_SNP [dm3] 3L_3854865_SNP [dm6]	G	C	1.649e^-4	1	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3854870	3L_3854870_SNP [dm3] 3L_3854870_SNP [dm6]	C	T	1.649e^-4	1	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7830586	3L_7830586_SNP [dm3] 3L_7837486_SNP [dm6]	T	G	1.650e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3L	5464405	3L_5464405_SNP [dm3] 3L_5471305_SNP [dm6]	C	A	1.650e^-4	1	INTERGENIC
3L	10329267	3L_10329267_SNP [dm3] 3L_10336167_SNP [dm6]	T	C	1.660e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2R	17669978	2R_17669978_SNP [dm3] 2R_21782473_SNP [dm6]	C	T	1.664e^-4	1	INTERGENIC
3L	5464453	3L_5464453_SNP [dm3] 3L_5471353_SNP [dm6]	C	T	1.667e^-4	1	INTERGENIC
3L	5464456	3L_5464456_SNP [dm3] 3L_5471356_SNP [dm6]	C	T	1.667e^-4	1	INTERGENIC
2L	8259122	2L_8259122_SNP [dm3] 2L_8259122_SNP [dm6]	A	T	1.680e^-4	1	UTR_3_PRIME Btk29A UPSTREAM mir-2b-1 DOWNSTREAM Btk29A
X	14081697	X_14081697_SNP [dm3] X_14187664_SNP [dm6]	C	A	1.681e^-4	1	UTR_3_PRIME CG12481
X	22196921	X_22196921_SNP [dm3] X_22795085_SNP [dm6]	G	T	1.682e^-4	1	INTRON CR44997	transposable element FlyBase
2L	16978102	2L_16978102_SNP [dm3] 2L_16978102_SNP [dm6]	G	A	1.695e^-4	1	INTRON beat-IIIb
2R	14572422	2R_14572422_SNP [dm3] 2R_18684917_SNP [dm6]	T	C	1.696e^-4	1	NON_SYNONYMOUS_CODING CG44433 UPSTREAM CG44434 & 1 other	TF binding site mE1_TFBS_sens
3R	1426613	3R_1426613_SNP [dm3] 3R_5600891_SNP [dm6]	C	T	1.700e^-4	1	UPSTREAM CG1427 & 1 other INTRON kra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	668020	3L_668020_SNP [dm3] 3L_668020_SNP [dm6]	C	T	1.708e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	11137483	X_11137483_SNP [dm3] X_11243450_SNP [dm6]	G	A	1.710e^-4	1	INTRON CG44422
3R	13775557	3R_13775557_DEL [dm3] 3R_17949835_DEL [dm6]	GC	G	1.719e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	1024692	2L_1024692_SNP [dm3] 2L_1024692_SNP [dm6]	C	G	1.719e^-4	1	INTRON IA-2
2L	14250321	2L_14250321_SNP [dm3] 2L_14250321_SNP [dm6]	G	T	1.724e^-4	1	INTERGENIC
2R	6231377	2R_6231377_SNP [dm3] 2R_10343872_SNP [dm6]	C	G	1.734e^-4	1	INTRON CG42732
X	5243178	X_5243178_SNP [dm3] X_5349145_SNP [dm6]	C	T	1.737e^-4	1	INTRON SK
2L	9534298	2L_9534298_SNP [dm3] 2L_9534298_SNP [dm6]	G	A	1.738e^-4	1	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9980028	2R_9980028_SNP [dm3] 2R_14092523_SNP [dm6]	G	A	1.740e^-4	1	DOWNSTREAM CG42288 INTRON Prosap
3L	7393376	3L_7393376_SNP [dm3] 3L_7400276_SNP [dm6]	T	G	1.740e^-4	1	NON_SYNONYMOUS_CODING CG18417 DOWNSTREAM CG8562
X	3620264	X_3620264_SNP [dm3] X_3726231_SNP [dm6]	G	T	1.741e^-4	1	INTRON tlk	TF binding site mE1_TFBS_bab1
X	18960974	X_18960974_SNP [dm3] X_19066941_SNP [dm6]	A	C	1.742e^-4	1	NON_SYNONYMOUS_CODING CG14190	TF binding site mE1_TFBS_chinmo
2L	8731937	2L_8731937_SNP [dm3] 2L_8731937_SNP [dm6]	A	T	1.746e^-4	1	INTRON raw
3L	7094536	3L_7094536_SNP [dm3] 3L_7101436_SNP [dm6]	G	C	1.751e^-4	1	INTRON form3
X	22192365	X_22192365_SNP [dm3] X_22790529_SNP [dm6]	C	T	1.755e^-4	1	INTRON CR44997
X	22178238	X_22178238_DEL [dm3] X_22776402_DEL [dm6]	TAATCAAGCAA...	T	1.757e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22178250	X_22178250_SNP [dm3] X_22776414_SNP [dm6]	C	T	1.757e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10045039	2L_10045039_SNP [dm3] 2L_10045039_SNP [dm6]	C	G	1.771e^-4	1	INTERGENIC
X	3627644	X_3627644_SNP [dm3] X_3733611_SNP [dm6]	T	C	1.776e^-4	1	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1213033	2L_1213033_SNP [dm3] 2L_1213033_SNP [dm6]	A	T	1.777e^-4	1	INTERGENIC
2L	1213049	2L_1213049_SNP [dm3] 2L_1213049_SNP [dm6]	C	A	1.777e^-4	1	INTERGENIC
2L	11253837	2L_11253837_SNP [dm3] 2L_11253837_SNP [dm6]	G	T	1.785e^-4	1	INTRON ab
X	15542905	X_15542905_SNP [dm3] X_15648872_SNP [dm6]	G	C	1.786e^-4	1	INTERGENIC
3L	7158647	3L_7158647_SNP [dm3] 3L_7165547_SNP [dm6]	A	T	1.796e^-4	1	SYNONYMOUS_CODING Dscam2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7825046	3L_7825046_SNP [dm3] 3L_7831946_SNP [dm6]	G	T	1.806e^-4	1	INTRON Pdp1
3L	20186377	3L_20186377_SNP [dm3] 3L_20193277_SNP [dm6]	T	G	1.810e^-4	1	INTRON CG42674
2R	6866360	2R_6866360_SNP [dm3] 2R_10978855_SNP [dm6]	A	T	1.810e^-4	1	UTR_3_PRIME luna
3L	9908491	3L_9908491_SNP [dm3] 3L_9915391_SNP [dm6]	A	C	1.811e^-4	1	INTRON CG34356
3R	1754723	3R_1754723_SNP [dm3] 3R_5929001_SNP [dm6]	A	C	1.812e^-4	1	INTRON CG34113
2L	4073262	2L_4073262_SNP [dm3] 2L_4073262_SNP [dm6]	G	T	1.827e^-4	1	INTRON ed
3L	3628376	3L_3628376_SNP [dm3] 3L_3628376_SNP [dm6]	C	A	1.842e^-4	1	INTRON dar1
2R	9646495	2R_9646495_SNP [dm3] 2R_13758990_SNP [dm6]	C	T	1.849e^-4	1	DOWNSTREAM CG6280 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	17401865	3L_17401865_SNP [dm3] 3L_17408765_SNP [dm6]	G	A	1.853e^-4	1	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18936508	3R_18936508_SNP [dm3] 3R_23110786_SNP [dm6]	A	G	1.857e^-4	1	INTRON CG13830
X	3200532	X_3200532_SNP [dm3] X_3306499_SNP [dm6]	A	T	1.857e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl
X	3200696	X_3200696_SNP [dm3] X_3306663_SNP [dm6]	G	A	1.857e^-4	1	INTRON dnc	TF binding site BDTNP1_TFBS_dl
2R	8720987	2R_8720987_SNP [dm3] 2R_12833482_SNP [dm6]	A	T	1.871e^-4	1	INTERGENIC
3L	13582584	3L_13582584_SNP [dm3] 3L_13589484_SNP [dm6]	T	A	1.871e^-4	1	INTRON bru-3
3R	9364396	3R_9364396_DEL [dm3] 3R_13538674_DEL [dm6]	CACTCCA	C	1.874e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	11183990	2L_11183990_SNP [dm3] 2L_11183990_SNP [dm6]	C	T	1.878e^-4	1	INTRON Ca-beta
X	4045895	X_4045895_SNP [dm3] X_4151862_SNP [dm6]	T	C	1.880e^-4	1	INTRON Fas2
X	4045927	X_4045927_SNP [dm3] X_4151894_SNP [dm6]	C	T	1.880e^-4	1	INTRON Fas2
X	20846104	X_20846104_SNP [dm3] X_20975077_SNP [dm6]	T	C	1.883e^-4	1	INTERGENIC
3L	10712198	3L_10712198_SNP [dm3] 3L_10719098_SNP [dm6]	G	A	1.885e^-4	1	INTERGENIC
2R	10254359	2R_10254359_DEL [dm3] 2R_14366854_DEL [dm6]	TT	T	1.885e^-4	1	UTR_5_PRIME CG34442 DOWNSTREAM CG34184
2L	8897195	2L_8897195_SNP [dm3] 2L_8897195_SNP [dm6]	T	A	1.910e^-4	1	INTERGENIC
2L	8897243	2L_8897243_SNP [dm3] 2L_8897243_SNP [dm6]	G	A	1.910e^-4	1	INTERGENIC
2L	8897280	2L_8897280_SNP [dm3] 2L_8897280_SNP [dm6]	T	C	1.910e^-4	1	INTERGENIC
3L	10712202	3L_10712202_SNP [dm3] 3L_10719102_SNP [dm6]	A	T	1.914e^-4	1	INTERGENIC
2R	18619681	2R_18619681_SNP [dm3] 2R_22732176_SNP [dm6]	A	G	1.914e^-4	1	SYNONYMOUS_CODING jbug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3476541	3L_3476541_SNP [dm3] 3L_3476541_SNP [dm6]	C	T	1.930e^-4	1	INTRON CG42324
2L	11036896	2L_11036896_SNP [dm3] 2L_11036896_SNP [dm6]	A	T	1.936e^-4	1	INTRON Samuel
2L	4833529	2L_4833529_SNP [dm3] 2L_4833529_SNP [dm6]	G	A	1.940e^-4	1	SYNONYMOUS_CODING Ir25a
2L	4833532	2L_4833532_SNP [dm3] 2L_4833532_SNP [dm6]	G	T	1.940e^-4	1	SYNONYMOUS_CODING Ir25a
2L	20119385	2L_20119385_SNP [dm3] 2L_20119385_SNP [dm6]	T	A	1.941e^-4	1	INTERGENIC
3L	9732925	3L_9732925_SNP [dm3] 3L_9739825_SNP [dm6]	A	T	1.946e^-4	1	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732928	3L_9732928_SNP [dm3] 3L_9739828_SNP [dm6]	C	T	1.946e^-4	1	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732936	3L_9732936_SNP [dm3] 3L_9739836_SNP [dm6]	T	A	1.946e^-4	1	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
2L	20325118	2L_20325118_SNP [dm3] 2L_20325118_SNP [dm6]	A	C	1.964e^-4	1	INTRON spir
3L	6578988	3L_6578988_SNP [dm3] 3L_6585888_SNP [dm6]	A	G	1.965e^-4	1	INTRON CG18769 & 1 other
3R	13722552	3R_13722552_SNP [dm3] 3R_17896830_SNP [dm6]	T	C	1.986e^-4	1	INTRON Rim
2L	20117607	2L_20117607_SNP [dm3] 2L_20117607_SNP [dm6]	G	A	1.993e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
X	17726179	X_17726179_SNP [dm3] X_17832146_SNP [dm6]	T	C	2.009e^-4	1	INTRON CG6398	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	13372674	X_13372674_SNP [dm3] X_13478641_SNP [dm6]	C	T	2.010e^-4	1	INTRON Neto
3L	5212203	3L_5212203_SNP [dm3] 3L_5219103_SNP [dm6]	G	A	2.015e^-4	1	SYNONYMOUS_CODING shep
2L	2546126	2L_2546126_SNP [dm3] 2L_2546126_SNP [dm6]	G	A	2.016e^-4	1	INTERGENIC
2R	19304971	2R_19304971_SNP [dm3] 2R_23417448_SNP [dm6]	C	T	2.016e^-4	1	DOWNSTREAM CG30411 INTRON CG9812
X	22195258	X_22195258_SNP [dm3] X_22793422_SNP [dm6]	G	A	2.040e^-4	1	INTRON CR44997
2L	19392462	2L_19392462_SNP [dm3] 2L_19392462_SNP [dm6]	A	G	2.044e^-4	1	SYNONYMOUS_CODING CG17544	TF binding site mE1_TFBS_cad
3L	13663186	3L_13663186_SNP [dm3] 3L_13670086_SNP [dm6]	G	A	2.052e^-4	1	INTRON bru-3
2L	16128449	2L_16128449_SNP [dm3] 2L_16128449_SNP [dm6]	A	G	2.061e^-4	1	INTERGENIC
3R	10314647	3R_10314647_SNP [dm3] 3R_14488925_SNP [dm6]	T	G	2.064e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2000740	3L_2000740_SNP [dm3] 3L_2000740_SNP [dm6]	T	A	2.068e^-4	1	INTERGENIC
3L	2000746	3L_2000746_SNP [dm3] 3L_2000746_SNP [dm6]	C	T	2.068e^-4	1	INTERGENIC
X	22185431	X_22185431_SNP [dm3] X_22783595_SNP [dm6]	A	G	2.074e^-4	1	INTRON CR44997
X	22188467	X_22188467_SNP [dm3] X_22786631_SNP [dm6]	T	A	2.074e^-4	1	INTRON CR44997
X	22190301	X_22190301_SNP [dm3] X_22788465_SNP [dm6]	C	T	2.074e^-4	1	INTRON CR44997
3L	9908467	3L_9908467_SNP [dm3] 3L_9915367_SNP [dm6]	T	A	2.076e^-4	1	INTRON CG34356
3R	1670315	3R_1670315_SNP [dm3] 3R_5844593_SNP [dm6]	T	A	2.080e^-4	1	NON_SYNONYMOUS_CODING CG1213
3R	1696146	3R_1696146_SNP [dm3] 3R_5870424_SNP [dm6]	G	C	2.080e^-4	1	INTRON CG34113
2R	16830193	2R_16830193_SNP [dm3] 2R_20942688_SNP [dm6]	T	G	2.083e^-4	1	INTERGENIC
3L	21593397	3L_21593397_SNP [dm3] 3L_21600297_SNP [dm6]	A	T	2.092e^-4	1	INTRON TfAP-2
X	22197517	X_22197517_SNP [dm3] X_22795681_SNP [dm6]	T	A	2.095e^-4	1	INTRON CR44997
3L	10678312	3L_10678312_SNP [dm3] 3L_10685212_SNP [dm6]	T	A	2.097e^-4	1	NON_SYNONYMOUS_CODING simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13775570	3R_13775570_SNP [dm3] 3R_17949848_SNP [dm6]	G	T	2.110e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	3852736	3L_3852736_SNP [dm3] 3L_3852736_SNP [dm6]	T	G	2.111e^-4	1	INTRON Awh
2R	13215794	2R_13215794_SNP [dm3] 2R_17328289_SNP [dm6]	C	T	2.124e^-4	1	INTRON mbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18889465	2R_18889465_SNP [dm3] 2R_23001942_SNP [dm6]	A	T	2.144e^-4	1	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4640025	3L_4640025_SNP [dm3] 3L_4640025_SNP [dm6]	T	A	2.147e^-4	1	INTRON axo
3R	25459134	3R_25459134_SNP [dm3] 3R_29633412_SNP [dm6]	C	T	2.158e^-4	1	INTRON Dop1R2
3L	9547647	3L_9547647_SNP [dm3] 3L_9554547_SNP [dm6]	G	A	2.159e^-4	1	INTRON CG42673
2R	20225098	2R_20225098_SNP [dm3] 2R_24337575_SNP [dm6]	T	C	2.162e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	4529925	3L_4529925_SNP [dm3] 3L_4529925_SNP [dm6]	C	T	2.162e^-4	1	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3786226	3L_3786226_SNP [dm3] 3L_3786226_SNP [dm6]	T	C	2.163e^-4	1	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	2585079	3R_2585079_SNP [dm3] 3R_6759357_SNP [dm6]	T	A	2.173e^-4	1	UTR_5_PRIME bcd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
3R	14237946	3R_14237946_SNP [dm3] 3R_18412224_SNP [dm6]	T	C	2.177e^-4	1	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2R	9435417	2R_9435417_SNP [dm3] 2R_13547912_SNP [dm6]	T	C	2.195e^-4	1	UPSTREAM CG6145 DOWNSTREAM CG33156 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5464449	3L_5464449_SNP [dm3] 3L_5471349_SNP [dm6]	A	G	2.200e^-4	1	INTERGENIC
2L	12149234	2L_12149234_SNP [dm3] 2L_12149234_SNP [dm6]	C	A	2.215e^-4	1	INTRON CG31760
2L	13559631	2L_13559631_SNP [dm3] 2L_13559631_SNP [dm6]	T	A	2.221e^-4	1	INTRON kuz
3R	2436136	3R_2436136_SNP [dm3] 3R_6610414_SNP [dm6]	C	G	2.229e^-4	1	INTERGENIC
3L	9732931	3L_9732931_SNP [dm3] 3L_9739831_SNP [dm6]	T	G	2.235e^-4	1	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
2L	17797168	2L_17797168_SNP [dm3] 2L_17797168_SNP [dm6]	C	G	2.251e^-4	1	INTRON CadN2
3R	5709067	3R_5709067_SNP [dm3] 3R_9883345_SNP [dm6]	C	G	2.253e^-4	1	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7830589	3L_7830589_SNP [dm3] 3L_7837489_SNP [dm6]	T	A	2.260e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
X	18106314	X_18106314_DEL [dm3] X_18212281_DEL [dm6]	TCT	T	2.263e^-4	1	UTR_3_PRIME CG33639 DOWNSTREAM CG33639	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3743275	X_3743275_SNP [dm3] X_3849242_SNP [dm6]	T	G	2.266e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_dl
3L	10712195	3L_10712195_SNP [dm3] 3L_10719095_SNP [dm6]	C	A	2.277e^-4	1	INTERGENIC
3R	6415438	3R_6415438_SNP [dm3] 3R_10589716_SNP [dm6]	T	A	2.283e^-4	1	INTRON hth	TF binding site mE1_TFBS_cad
3R	1713150	3R_1713150_SNP [dm3] 3R_5887428_SNP [dm6]	G	C	2.295e^-4	1	INTRON CG34113
2R	9043549	2R_9043549_SNP [dm3] 2R_13156044_SNP [dm6]	G	A	2.300e^-4	1	INTRON TppII
2L	4091300	2L_4091300_DEL [dm3] 2L_4091300_DEL [dm6]	TAGTCT	T	2.304e^-4	1	INTRON ed
X	21306250	X_21306250_SNP [dm3] X_21435223_SNP [dm6]	T	C	2.304e^-4	1	INTRON CG42343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3904304	X_3904304_SNP [dm3] X_4010271_SNP [dm6]	A	C	2.309e^-4	1	INTERGENIC
2R	19501816	2R_19501816_SNP [dm3] 2R_23614293_SNP [dm6]	C	A	2.312e^-4	1	INTRON CG17664 & 1 other
3R	18936509	3R_18936509_SNP [dm3] 3R_23110787_SNP [dm6]	G	A	2.319e^-4	1	INTRON CG13830
3R	14943798	3R_14943798_SNP [dm3] 3R_19118076_SNP [dm6]	T	C	2.337e^-4	1	INTRON CG6040
2L	20288971	2L_20288971_SNP [dm3] 2L_20288971_SNP [dm6]	G	C	2.349e^-4	1	INTERGENIC
3L	11696857	3L_11696857_INS [dm3] 3L_11703757_INS [dm6]	A	ACCA	2.356e^-4	1	INTRON CG11658
2L	926545	2L_926545_SNP [dm3] 2L_926545_SNP [dm6]	A	G	2.359e^-4	1	INTRON CG4341
3L	20174079	3L_20174079_SNP [dm3] 3L_20180979_SNP [dm6]	A	G	2.362e^-4	1	INTRON CG42674
X	13189163	X_13189163_SNP [dm3] X_13295130_SNP [dm6]	G	C	2.363e^-4	1	DOWNSTREAM CG15744 INTRON CG1764
3L	4278573	3L_4278573_SNP [dm3] 3L_4278573_SNP [dm6]	G	C	2.372e^-4	1	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1664890	3R_1664890_SNP [dm3] 3R_5839168_SNP [dm6]	G	A	2.372e^-4	1	DOWNSTREAM CG1208 INTERGENIC
2L	17043229	2L_17043229_SNP [dm3] 2L_17043229_SNP [dm6]	T	A	2.379e^-4	1	UPSTREAM CR43802 INTERGENIC
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	2.387e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	17796996	2L_17796996_SNP [dm3] 2L_17796996_SNP [dm6]	T	G	2.396e^-4	1	INTRON CadN2
2L	8731838	2L_8731838_SNP [dm3] 2L_8731838_SNP [dm6]	A	G	2.399e^-4	1	INTRON raw
2L	8731842	2L_8731842_SNP [dm3] 2L_8731842_SNP [dm6]	A	G	2.399e^-4	1	INTRON raw
2R	19304863	2R_19304863_SNP [dm3] 2R_23417340_SNP [dm6]	C	T	2.400e^-4	1	DOWNSTREAM CG30411 INTRON CG9812
3R	1666152	3R_1666152_SNP [dm3] 3R_5840430_SNP [dm6]	C	A	2.401e^-4	1	UPSTREAM CG1213 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25956376	3R_25956376_SNP [dm3] 3R_30130654_SNP [dm6]	C	T	2.413e^-4	1	NON_SYNONYMOUS_CODING CG31029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	3529410	X_3529410_INS [dm3] X_3635377_INS [dm6]	G	GG	2.418e^-4	1	INTRON AstA-R1
2R	2740462	2R_2740462_SNP [dm3] 2R_6852957_SNP [dm6]	T	A	2.432e^-4	1	INTERGENIC
3R	2240193	3R_2240193_SNP [dm3] 3R_6414471_SNP [dm6]	A	T	2.432e^-4	1	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	20303136	2L_20303136_SNP [dm3] 2L_20303136_SNP [dm6]	T	C	2.432e^-4	1	INTERGENIC
2L	1024487	2L_1024487_SNP [dm3] 2L_1024487_SNP [dm6]	A	G	2.435e^-4	1	INTRON IA-2	insulator Insulator_Class_II.mE01
2L	18198109	2L_18198109_INS [dm3] 2L_18198109_INS [dm6]	T	TT	2.435e^-4	1	INTRON CG42750
2R	13215333	2R_13215333_SNP [dm3] 2R_17327828_SNP [dm6]	G	T	2.436e^-4	1	INTRON mbl
2R	4021575	2R_4021575_DEL [dm3] 2R_8134070_DEL [dm6]	AA	A	2.440e^-4	1	UTR_3_PRIME Pabp2 DOWNSTREAM Obp44a & 1 other
3L	9903686	3L_9903686_SNP [dm3] 3L_9910586_SNP [dm6]	G	A	2.446e^-4	1	INTRON CG34356
2L	8098931	2L_8098931_SNP [dm3] 2L_8098931_SNP [dm6]	T	A	2.447e^-4	1	INTRON Bsg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	22196284	X_22196284_SNP [dm3] X_22794448_SNP [dm6]	C	T	2.448e^-4	1	INTRON CR44997
X	859029	X_859029_SNP [dm3] X_964996_SNP [dm6]	T	A	2.452e^-4	1	INTERGENIC
2L	3238075	2L_3238075_INS [dm3] 2L_3238075_INS [dm6]	T	TGT	2.455e^-4	1	INTERGENIC
2L	8574639	2L_8574639_SNP [dm3] 2L_8574639_SNP [dm6]	T	A	2.466e^-4	1	INTRON Sema-1a
2L	20329874	2L_20329874_SNP [dm3] 2L_20329874_SNP [dm6]	T	C	2.474e^-4	1	INTRON spir
3L	10241531	3L_10241531_INS [dm3] 3L_10248431_INS [dm6]	C	CTTTTTTTGTT...	2.474e^-4	1	DOWNSTREAM CR44539 EXON CR44540
2R	4112827	2R_4112827_SNP [dm3] 2R_8225322_SNP [dm6]	G	A	2.475e^-4	1	SYNONYMOUS_CODING LRP1
2L	3856501	2L_3856501_SNP [dm3] 2L_3856501_SNP [dm6]	C	T	2.484e^-4	1	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8113189	2L_8113189_SNP [dm3] 2L_8113189_SNP [dm6]	C	A	2.485e^-4	1	UTR_3_PRIME Bsg
3L	12858903	3L_12858903_SNP [dm3] 3L_12865803_SNP [dm6]	A	C	2.491e^-4	1	INTERGENIC
3R	8420470	3R_8420470_SNP [dm3] 3R_12594748_SNP [dm6]	C	G	2.491e^-4	1	UPSTREAM Octbeta2R INTRON Octbeta2R
3R	6513393	3R_6513393_SNP [dm3] 3R_10687671_SNP [dm6]	G	T	2.498e^-4	1	INTRON Skeletor	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	4091299	2L_4091299_SNP [dm3] 2L_4091299_SNP [dm6]	C	T	2.507e^-4	1	INTRON ed
X	17351529	X_17351529_SNP [dm3] X_17457496_SNP [dm6]	G	A	2.507e^-4	1	UTR_3_PRIME CG43658
X	4953952	X_4953952_DEL [dm3] X_5059919_DEL [dm6]	CAA	G	2.508e^-4	1	INTRON CR44833 & 1 other
X	9680164	X_9680164_SNP [dm3] X_9786131_SNP [dm6]	G	A	2.527e^-4	1	INTRON CG32698	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15292653	3R_15292653_SNP [dm3] 3R_19466931_SNP [dm6]	A	G	2.528e^-4	1	INTRON Dys
2L	1211979	2L_1211979_SNP [dm3] 2L_1211979_SNP [dm6]	T	A	2.533e^-4	1	INTERGENIC
3R	12969414	3R_12969414_SNP [dm3] 3R_17143692_SNP [dm6]	G	C	2.534e^-4	1	DOWNSTREAM m-cup INTERGENIC
2R	18889467	2R_18889467_DEL [dm3] 2R_23001944_DEL [dm6]	TACAACA	T	2.536e^-4	1	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	17503134	3L_17503134_SNP [dm3] 3L_17510034_SNP [dm6]	G	A	2.536e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8622453	2R_8622453_SNP [dm3] 2R_12734948_SNP [dm6]	C	T	2.540e^-4	1	SYNONYMOUS_CODING CG42663
2L	10718705	2L_10718705_SNP [dm3] 2L_10718705_SNP [dm6]	G	C	2.551e^-4	1	INTERGENIC
2L	15942873	2L_15942873_SNP [dm3] 2L_15942873_SNP [dm6]	A	T	2.551e^-4	1	DOWNSTREAM CG12448 INTRON beat-Ib
3R	1754625	3R_1754625_SNP [dm3] 3R_5928903_SNP [dm6]	A	T	2.554e^-4	1	INTRON CG34113
2L	20327227	2L_20327227_INS [dm3] 2L_20327227_INS [dm6]	T	TTGAAT	2.561e^-4	1	INTRON spir
2L	16793457	2L_16793457_SNP [dm3] 2L_16793457_SNP [dm6]	T	G	2.564e^-4	1	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2R	19824631	2R_19824631_SNP [dm3] 2R_23937108_SNP [dm6]	G	T	2.564e^-4	1	UTR_3_PRIME CG3735 DOWNSTREAM CG3735
3R	1735127	3R_1735127_SNP [dm3] 3R_5909405_SNP [dm6]	G	T	2.568e^-4	1	INTRON CG34113
2L	2505571	2L_2505571_SNP [dm3] 2L_2505571_SNP [dm6]	C	T	2.569e^-4	1	INTERGENIC
3R	13807395	3R_13807395_SNP [dm3] 3R_17981673_SNP [dm6]	C	T	2.569e^-4	1	INTRON cpo
X	13753338	X_13753338_SNP [dm3] X_13859305_SNP [dm6]	T	G	2.569e^-4	1	UTR_3_PRIME mamo INTRON mamo
3L	10198375	3L_10198375_SNP [dm3] 3L_10205275_SNP [dm6]	C	A	2.607e^-4	1	UPSTREAM CR44538 INTERGENIC
X	17351498	X_17351498_SNP [dm3] X_17457465_SNP [dm6]	G	A	2.613e^-4	1	UTR_3_PRIME CG43658
2L	1212965	2L_1212965_SNP [dm3] 2L_1212965_SNP [dm6]	C	A	2.619e^-4	1	INTERGENIC
2R	13076211	2R_13076211_SNP [dm3] 2R_17188706_SNP [dm6]	C	T	2.621e^-4	1	UPSTREAM CR45323 DOWNSTREAM CR44389 INTERGENIC
3L	4272119	3L_4272119_SNP [dm3] 3L_4272119_SNP [dm6]	T	C	2.628e^-4	1	SYNONYMOUS_CODING CG1273
3L	10712189	3L_10712189_DEL [dm3] 3L_10719089_DEL [dm6]	AT	G	2.631e^-4	1	INTERGENIC
2R	16367599	2R_16367599_SNP [dm3] 2R_20480094_SNP [dm6]	G	A	2.636e^-4	1	INTERGENIC
3R	14237702	3R_14237702_SNP [dm3] 3R_18411980_SNP [dm6]	A	T	2.663e^-4	1	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7268108	2R_7268108_SNP [dm3] 2R_11380603_SNP [dm6]	A	G	2.667e^-4	1	UTR_3_PRIME Sod3 DOWNSTREAM Sod3
2R	14317352	2R_14317352_SNP [dm3] 2R_18429847_SNP [dm6]	A	T	2.676e^-4	1	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
2R	14317361	2R_14317361_SNP [dm3] 2R_18429856_SNP [dm6]	G	A	2.676e^-4	1	SYNONYMOUS_CODING CG12263 DOWNSTREAM CG30118	TF binding site mE1_TFBS_cad
X	22196268	X_22196268_SNP [dm3] X_22794432_SNP [dm6]	G	A	2.678e^-4	1	INTRON CR44997
2L	20335050	2L_20335050_SNP [dm3] 2L_20335050_SNP [dm6]	G	A	2.684e^-4	1	INTRON spir
3L	6818091	3L_6818091_SNP [dm3] 3L_6824991_SNP [dm6]	T	C	2.691e^-4	1	INTERGENIC
3L	12173737	3L_12173737_DEL [dm3] 3L_12180637_DEL [dm6]	TACTAG	A	2.695e^-4	1	INTRON CAH2
X	3743213	X_3743213_SNP [dm3] X_3849180_SNP [dm6]	C	G	2.700e^-4	1	INTRON ec
3L	7830493	3L_7830493_INS [dm3] 3L_7837393_INS [dm6]	T	TTTTATAGC	2.720e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7830498	3L_7830498_SNP [dm3] 3L_7837398_SNP [dm6]	A	G	2.720e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2L	20334221	2L_20334221_SNP [dm3] 2L_20334221_SNP [dm6]	G	T	2.723e^-4	1	INTRON spir
X	18812727	X_18812727_SNP [dm3] X_18918694_SNP [dm6]	G	T	2.724e^-4	1	INTERGENIC
2L	14680240	2L_14680240_INS [dm3] 2L_14680240_INS [dm6]	T	TT	2.735e^-4	1	INTRON osp
3L	10287406	3L_10287406_SNP [dm3] 3L_10294306_SNP [dm6]	C	G	2.738e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19283281	3L_19283281_SNP [dm3] 3L_19290181_SNP [dm6]	G	C	2.740e^-4	1	INTRON Gbs-76A
X	17351487	X_17351487_DEL [dm3] X_17457454_DEL [dm6]	AAA	A	2.743e^-4	1	UTR_3_PRIME CG43658
3R	1757140	3R_1757140_SNP [dm3] 3R_5931418_SNP [dm6]	A	G	2.746e^-4	1	INTRON CG34113
2L	5793659	2L_5793659_SNP [dm3] 2L_5793659_SNP [dm6]	T	A	2.764e^-4	1	INTRON CG9171
3L	4278583	3L_4278583_SNP [dm3] 3L_4278583_SNP [dm6]	C	T	2.766e^-4	1	DOWNSTREAM CG1273 INTRON CG1311	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7769114	3L_7769114_SNP [dm3] 3L_7776014_SNP [dm6]	G	C	2.776e^-4	1	UPSTREAM Clk INTERGENIC	regulatory region REDfly_CRMs
3L	13760832	3L_13760832_SNP [dm3] 3L_13767732_SNP [dm6]	G	A	2.795e^-4	1	INTRON bru-3
3L	3086747	3L_3086747_SNP [dm3] 3L_3086747_SNP [dm6]	C	G	2.805e^-4	1	INTRON CG11486
3R	17362928	3R_17362928_SNP [dm3] 3R_21537206_SNP [dm6]	T	C	2.814e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	15719459	X_15719459_SNP [dm3] X_15825426_SNP [dm6]	T	A	2.818e^-4	1	UTR_3_PRIME sd
3L	4278995	3L_4278995_SNP [dm3] 3L_4278995_SNP [dm6]	C	T	2.825e^-4	1	SYNONYMOUS_CODING CG1311	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3238057	2L_3238057_SNP [dm3] 2L_3238057_SNP [dm6]	C	T	2.836e^-4	1	INTERGENIC
3R	14239280	3R_14239280_SNP [dm3] 3R_18413558_SNP [dm6]	T	A	2.840e^-4	1	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20258104	2L_20258104_SNP [dm3] 2L_20258104_SNP [dm6]	C	A	2.844e^-4	1	UPSTREAM CG17571 INTERGENIC
X	12081141	X_12081141_SNP [dm3] X_12187108_SNP [dm6]	G	A	2.868e^-4	1	INTRON Ten-a
X	22201669	X_22201669_SNP [dm3] X_22799833_SNP [dm6]	T	C	2.871e^-4	1	INTERGENIC
X	5040908	X_5040908_SNP [dm3] X_5146875_SNP [dm6]	A	G	2.883e^-4	1	INTRON rg & 1 other
X	5040934	X_5040934_SNP [dm3] X_5146901_SNP [dm6]	T	C	2.883e^-4	1	INTRON rg & 1 other
2R	5805877	2R_5805877_SNP [dm3] 2R_9918372_SNP [dm6]	C	T	2.886e^-4	1	INTRON Mef2	TF binding site mE1_TFBS_chinmo
2L	12281131	2L_12281131_SNP [dm3] 2L_12281131_SNP [dm6]	G	A	2.890e^-4	1	INTRON aret
3L	8236880	3L_8236880_SNP [dm3] 3L_8243780_SNP [dm6]	G	T	2.891e^-4	1	INTRON Dscam4
3L	4527515	3L_4527515_SNP [dm3] 3L_4527515_SNP [dm6]	C	G	2.897e^-4	1	INTRON Tie
3L	9544992	3L_9544992_SNP [dm3] 3L_9551892_SNP [dm6]	A	C	2.908e^-4	1	INTRON CG42673
X	21357562	X_21357562_SNP [dm3] X_21486535_SNP [dm6]	G	C	2.919e^-4	1	INTERGENIC
3R	26781674	3R_26781674_SNP [dm3] 3R_30955952_SNP [dm6]	T	A	2.927e^-4	1	INTERGENIC
3R	13914775	3R_13914775_SNP [dm3] 3R_18089053_SNP [dm6]	G	A	2.958e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3L	1698947	3L_1698947_SNP [dm3] 3L_1698947_SNP [dm6]	G	A	2.967e^-4	1	INTRON CG7991
X	8952200	X_8952200_DEL [dm3] X_9058167_DEL [dm6]	TTCAGTTCTTAACAAAAGTT...	A	2.968e^-4	1	INTRON CG15365	TF binding site mE1_TFBS_chinmo
2L	3619564	2L_3619564_SNP [dm3] 2L_3619564_SNP [dm6]	C	T	2.984e^-4	1	SYNONYMOUS_CODING Dot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	20175119	3L_20175119_SNP [dm3] 3L_20182019_SNP [dm6]	G	T	2.986e^-4	1	INTRON CG42674
3L	7830446	3L_7830446_SNP [dm3] 3L_7837346_SNP [dm6]	A	G	3.000e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2R	4521259	2R_4521259_INS [dm3] 2R_8633754_INS [dm6]	T	TTTTAG	3.004e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14666388	3L_14666388_SNP [dm3] 3L_14673288_SNP [dm6]	G	C	3.011e^-4	1	UPSTREAM CG43121 DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	14666394	3L_14666394_SNP [dm3] 3L_14673294_SNP [dm6]	C	T	3.011e^-4	1	UPSTREAM CG43121 DOWNSTREAM tRNA:M3:70Fa INTRON ome	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	10763741	3L_10763741_DEL [dm3] 3L_10770641_DEL [dm6]	GG	G	3.017e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
3L	10582231	3L_10582231_SNP [dm3] 3L_10589131_SNP [dm6]	T	A	3.018e^-4	1	INTRON A2bp1
X	8096229	X_8096229_SNP [dm3] X_8202196_SNP [dm6]	G	A	3.029e^-4	1	INTRON sdt	TF binding site mE1_TFBS_inv
2R	8111559	2R_8111559_DEL [dm3] 2R_12224054_DEL [dm6]	ACACC	A	3.030e^-4	1	DOWNSTREAM CG8854 INTERGENIC
3L	15634236	3L_15634236_SNP [dm3] 3L_15641136_SNP [dm6]	G	A	3.037e^-4	1	INTRON comm3
2L	14871907	2L_14871907_SNP [dm3] 2L_14871907_SNP [dm6]	G	A	3.038e^-4	1	SYNONYMOUS_CODING CG4480
X	8617837	X_8617837_SNP [dm3] X_8723804_SNP [dm6]	T	C	3.045e^-4	1	UPSTREAM CR43297 INTERGENIC
2L	4833517	2L_4833517_SNP [dm3] 2L_4833517_SNP [dm6]	G	A	3.053e^-4	1	SYNONYMOUS_CODING Ir25a
X	8816041	X_8816041_SNP [dm3] X_8922008_SNP [dm6]	T	A	3.053e^-4	1	DOWNSTREAM CG12661 INTRON rdgA
2L	11296751	2L_11296751_SNP [dm3] 2L_11296751_SNP [dm6]	T	A	3.058e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	11958230	3L_11958230_SNP [dm3] 3L_11965130_SNP [dm6]	C	T	3.079e^-4	1	SYNONYMOUS_CODING prc
3R	5307674	3R_5307674_SNP [dm3] 3R_9481952_SNP [dm6]	C	G	3.084e^-4	1	INTRON CG16779
2R	2583495	2R_2583495_SNP [dm3] 2R_6695990_SNP [dm6]	C	G	3.087e^-4	1	SYNONYMOUS_CODING Mob4 UPSTREAM Rab2 DOWNSTREAM CG3270	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18375672	2L_18375672_SNP [dm3] 2L_18375672_SNP [dm6]	T	A	3.090e^-4	1	INTRON Fas3
3R	23561952	3R_23561952_SNP [dm3] 3R_27736230_SNP [dm6]	C	T	3.097e^-4	1	UPSTREAM Ets98B INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15229541	3L_15229541_SNP [dm3] 3L_15236441_SNP [dm6]	C	T	3.099e^-4	1	SYNONYMOUS_CODING Tollo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_sens
2L	22029027	2L_22029027_SNP [dm3] 2L_22029027_SNP [dm6]	G	A	3.101e^-4	1	INTERGENIC
X	5626723	X_5626723_SNP [dm3] X_5732690_SNP [dm6]	G	T	3.113e^-4	1	UPSTREAM CG15773 INTRON CG32758	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1212971	2L_1212971_SNP [dm3] 2L_1212971_SNP [dm6]	T	A	3.116e^-4	1	INTERGENIC
3L	4867674	3L_4867674_SNP [dm3] 3L_4867674_SNP [dm6]	A	G	3.117e^-4	1	INTRON CG17150
X	22187734	X_22187734_SNP [dm3] X_22785898_SNP [dm6]	C	T	3.118e^-4	1	INTRON CR44997
X	22190716	X_22190716_SNP [dm3] X_22788880_SNP [dm6]	G	T	3.118e^-4	1	INTRON CR44997	transposable element FlyBase
3L	6818067	3L_6818067_SNP [dm3] 3L_6824967_SNP [dm6]	T	C	3.136e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3R	6426293	3R_6426293_SNP [dm3] 3R_10600571_SNP [dm6]	T	G	3.176e^-4	1	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20334378	2L_20334378_SNP [dm3] 2L_20334378_SNP [dm6]	C	T	3.184e^-4	1	INTRON spir
X	11096273	X_11096273_SNP [dm3] X_11202240_SNP [dm6]	A	G	3.190e^-4	1	UPSTREAM CG11106 INTERGENIC
3L	7306726	3L_7306726_SNP [dm3] 3L_7313626_SNP [dm6]	T	A	3.197e^-4	1	UPSTREAM unc-13-4A INTERGENIC
2L	20143408	2L_20143408_DEL [dm3] 2L_20143408_DEL [dm6]	GCGGAGGCGAG...	G	3.197e^-4	1	INTERGENIC
3R	1719197	3R_1719197_DEL [dm3] 3R_5893475_DEL [dm6]	AA	A	3.199e^-4	1	INTRON CG34113
2L	8446278	2L_8446278_SNP [dm3] 2L_8446278_SNP [dm6]	C	T	3.224e^-4	1	SYNONYMOUS_CODING U26 UTR_3_PRIME U26 DOWNSTREAM CG31897
2R	13385514	2R_13385514_SNP [dm3] 2R_17498009_SNP [dm6]	T	C	3.225e^-4	1	INTERGENIC
2L	17797268	2L_17797268_SNP [dm3] 2L_17797268_SNP [dm6]	C	G	3.230e^-4	1	INTRON CadN2
2L	4167656	2L_4167656_SNP [dm3] 2L_4167656_SNP [dm6]	T	A	3.230e^-4	1	INTERGENIC
3L	10687163	3L_10687163_SNP [dm3] 3L_10694063_SNP [dm6]	C	A	3.233e^-4	1	UTR_5_PRIME CG6463 UPSTREAM CG33493 DOWNSTREAM NijA	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10674012	2R_10674012_SNP [dm3] 2R_14786507_SNP [dm6]	T	A	3.233e^-4	1	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	19135837	2R_19135837_SNP [dm3] 2R_23248314_SNP [dm6]	C	A	3.243e^-4	1	UPSTREAM RpL22-like INTERGENIC
2L	8398451	2L_8398451_DEL [dm3] 2L_8398451_DEL [dm6]	CAATAC	C	3.256e^-4	1	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	9735542	2R_9735542_SNP [dm3] 2R_13848037_SNP [dm6]	G	A	3.258e^-4	1	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735545	2R_9735545_SNP [dm3] 2R_13848040_SNP [dm6]	G	A	3.258e^-4	1	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735580	2R_9735580_SNP [dm3] 2R_13848075_SNP [dm6]	G	A	3.258e^-4	1	NON_SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735605	2R_9735605_SNP [dm3] 2R_13848100_SNP [dm6]	G	A	3.258e^-4	1	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9735680	2R_9735680_SNP [dm3] 2R_13848175_SNP [dm6]	T	C	3.258e^-4	1	SYNONYMOUS_CODING CG30484	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7144403	X_7144403_SNP [dm3] X_7250370_SNP [dm6]	T	C	3.266e^-4	1	INTRON CR44357
X	22182733	X_22182733_SNP [dm3] X_22780897_SNP [dm6]	A	T	3.267e^-4	1	INTRON CR44997
3L	3837317	3L_3837317_SNP [dm3] 3L_3837317_SNP [dm6]	G	A	3.268e^-4	1	NON_SYNONYMOUS_CODING enc	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6292507	2L_6292507_SNP [dm3] 2L_6292507_SNP [dm6]	C	A	3.270e^-4	1	DOWNSTREAM Ddr INTRON Ddr
3R	16005337	3R_16005337_INS [dm3] 3R_20179615_INS [dm6]	A	ATGTA	3.289e^-4	1	INTERGENIC	TF binding site mE1_TFBS_sbb
3L	10964325	3L_10964325_SNP [dm3] 3L_10971225_SNP [dm6]	T	A	3.294e^-4	1	INTERGENIC
3R	9824544	3R_9824544_SNP [dm3] 3R_13998822_SNP [dm6]	C	T	3.300e^-4	1	INTRON rdx	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	4975793	X_4975793_SNP [dm3] X_5081760_SNP [dm6]	G	A	3.310e^-4	1	UTR_5_PRIME CG32767	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	3.311e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	3.311e^-4	1	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	7387526	3L_7387526_SNP [dm3] 3L_7394426_SNP [dm6]	T	C	3.320e^-4	1	INTRON CG8563
3L	7388435	3L_7388435_SNP [dm3] 3L_7395335_SNP [dm6]	A	T	3.320e^-4	1	INTRON CG8563
3L	7830499	3L_7830499_SNP [dm3] 3L_7837399_SNP [dm6]	T	A	3.321e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
X	8297468	X_8297468_SNP [dm3] X_8403435_SNP [dm6]	A	T	3.323e^-4	1	UTR_3_PRIME CG10555	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15115768	3L_15115768_SNP [dm3] 3L_15122668_SNP [dm6]	G	A	3.323e^-4	1	SYNONYMOUS_CODING CG16959 DOWNSTREAM CG32847 INTRON Cep135
2R	5868148	2R_5868148_SNP [dm3] 2R_9980643_SNP [dm6]	C	A	3.329e^-4	1	UTR_3_PRIME eve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	22177482	X_22177482_DEL [dm3] X_22775646_DEL [dm6]	TTTAA	T	3.359e^-4	1	INTRON CR44997
X	22178255	X_22178255_DEL [dm3] X_22776419_DEL [dm6]	GAATATCACATAGCTTATAC...	G	3.359e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22196338	X_22196338_SNP [dm3] X_22794502_SNP [dm6]	G	T	3.359e^-4	1	INTRON CR44997	transposable element FlyBase
X	22196339	X_22196339_DEL [dm3] X_22794503_DEL [dm6]	AAGGAAGCGTG...	A	3.359e^-4	1	INTRON CR44997	transposable element FlyBase
3R	1739602	3R_1739602_SNP [dm3] 3R_5913880_SNP [dm6]	T	G	3.362e^-4	1	INTRON CG34113
X	16159707	X_16159707_SNP [dm3] X_16265674_SNP [dm6]	C	T	3.381e^-4	1	SYNONYMOUS_CODING CG12507
3R	14870428	3R_14870428_SNP [dm3] 3R_19044706_SNP [dm6]	C	T	3.387e^-4	1	DOWNSTREAM cdi & 1 other INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	6771353	3R_6771353_SNP [dm3] 3R_10945631_SNP [dm6]	C	A	3.390e^-4	1	INTERGENIC
3R	8396921	3R_8396921_SNP [dm3] 3R_12571199_SNP [dm6]	G	A	3.393e^-4	1	INTRON Octbeta2R
2L	8843468	2L_8843468_SNP [dm3] 2L_8843468_SNP [dm6]	G	A	3.394e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
3R	13775494	3R_13775494_SNP [dm3] 3R_17949772_SNP [dm6]	C	T	3.411e^-4	1	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	8234171	2L_8234171_SNP [dm3] 2L_8234171_SNP [dm6]	C	T	3.412e^-4	1	INTRON Pvr
3L	1698959	3L_1698959_SNP [dm3] 3L_1698959_SNP [dm6]	G	T	3.413e^-4	1	INTRON CG7991
X	22193978	X_22193978_SNP [dm3] X_22792142_SNP [dm6]	A	G	3.419e^-4	1	INTRON CR44997
3L	16156405	3L_16156405_SNP [dm3] 3L_16163305_SNP [dm6]	G	A	3.423e^-4	1	INTRON CG5151
3R	7946328	3R_7946328_SNP [dm3] 3R_12120606_SNP [dm6]	G	C	3.423e^-4	1	DOWNSTREAM CG4702 INTERGENIC
3R	13418971	3R_13418971_SNP [dm3] 3R_17593249_SNP [dm6]	T	A	3.428e^-4	1	INTERGENIC
2L	19330145	2L_19330145_SNP [dm3] 2L_19330145_SNP [dm6]	G	A	3.431e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20118402	2L_20118402_SNP [dm3] 2L_20118402_SNP [dm6]	A	C	3.436e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
2L	12281343	2L_12281343_SNP [dm3] 2L_12281343_SNP [dm6]	A	G	3.438e^-4	1	INTRON aret
X	3904418	X_3904418_SNP [dm3] X_4010385_SNP [dm6]	G	A	3.443e^-4	1	INTERGENIC
2R	20225035	2R_20225035_SNP [dm3] 2R_24337512_SNP [dm6]	T	G	3.451e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	6607506	3R_6607506_SNP [dm3] 3R_10781784_SNP [dm6]	C	T	3.451e^-4	1	NON_SYNONYMOUS_CODING CG42633 DOWNSTREAM Desi & 1 other	TF binding site mE1_TFBS_sens
3R	6331260	3R_6331260_SNP [dm3] 3R_10505538_SNP [dm6]	A	G	3.456e^-4	1	INTERGENIC
3L	15202382	3L_15202382_SNP [dm3] 3L_15209282_SNP [dm6]	A	T	3.459e^-4	1	DOWNSTREAM CG6888 INTERGENIC
2L	8081683	2L_8081683_SNP [dm3] 2L_8081683_SNP [dm6]	C	T	3.463e^-4	1	INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13957846	2R_13957846_SNP [dm3] 2R_18070341_SNP [dm6]	T	G	3.465e^-4	1	INTRON CG34386
3R	14287653	3R_14287653_SNP [dm3] 3R_18461931_SNP [dm6]	T	A	3.466e^-4	1	INTRON fru
X	22178327	X_22178327_DEL [dm3] X_22776491_DEL [dm6]	TACAATGTTGACGAAATGGA...	T	3.470e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22178453	X_22178453_SNP [dm3] X_22776617_SNP [dm6]	A	T	3.470e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA
X	22178510	X_22178510_SNP [dm3] X_22776674_SNP [dm6]	G	A	3.470e^-4	1	INTRON CR44997
X	22196406	X_22196406_SNP [dm3] X_22794570_SNP [dm6]	A	G	3.470e^-4	1	INTRON CR44997	transposable element FlyBase
2L	8731872	2L_8731872_SNP [dm3] 2L_8731872_SNP [dm6]	A	C	3.477e^-4	1	INTRON raw
3L	3844702	3L_3844702_SNP [dm3] 3L_3844702_SNP [dm6]	G	A	3.478e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_cad
X	22190354	X_22190354_SNP [dm3] X_22788518_SNP [dm6]	C	T	3.488e^-4	1	INTRON CR44997
2L	16083649	2L_16083649_SNP [dm3] 2L_16083649_SNP [dm6]	C	T	3.496e^-4	1	INTERGENIC
3L	5464447	3L_5464447_SNP [dm3] 3L_5471347_SNP [dm6]	T	A	3.499e^-4	1	INTERGENIC
3L	1604325	3L_1604325_SNP [dm3] 3L_1604325_SNP [dm6]	A	C	3.510e^-4	1	NON_SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
2R	18889569	2R_18889569_SNP [dm3] 2R_23002046_SNP [dm6]	C	T	3.513e^-4	1	INTRON twi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	16695096	2R_16695096_SNP [dm3] 2R_20807591_SNP [dm6]	A	C	3.527e^-4	1	INTERGENIC
3L	11686658	3L_11686658_SNP [dm3] 3L_11693558_SNP [dm6]	A	C	3.532e^-4	1	DOWNSTREAM CG14135 & 1 other EXON CR43887	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4225121	2R_4225121_SNP [dm3] 2R_8337616_SNP [dm6]	C	T	3.536e^-4	1	INTRON pdm3
2R	4225144	2R_4225144_SNP [dm3] 2R_8337639_SNP [dm6]	G	T	3.536e^-4	1	INTRON pdm3
2R	4225146	2R_4225146_SNP [dm3] 2R_8337641_SNP [dm6]	C	T	3.536e^-4	1	INTRON pdm3
2L	20117852	2L_20117852_SNP [dm3] 2L_20117852_SNP [dm6]	C	A	3.543e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	6813324	3R_6813324_SNP [dm3] 3R_10987602_SNP [dm6]	A	G	3.543e^-4	1	INTRON CG34114
2L	6292432	2L_6292432_SNP [dm3] 2L_6292432_SNP [dm6]	C	A	3.558e^-4	1	DOWNSTREAM Ddr INTRON Ddr
2L	17797185	2L_17797185_DEL [dm3] 2L_17797185_DEL [dm6]	TCTTG	T	3.565e^-4	1	INTRON CadN2
2R	5650701	2R_5650701_SNP [dm3] 2R_9763196_SNP [dm6]	C	G	3.567e^-4	1	SYNONYMOUS_CODING trpl	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8622642	2R_8622642_SNP [dm3] 2R_12735137_SNP [dm6]	T	C	3.592e^-4	1	INTRON CG42663
2R	8622854	2R_8622854_SNP [dm3] 2R_12735349_SNP [dm6]	A	G	3.592e^-4	1	INTRON CG42663
2L	1442696	2L_1442696_SNP [dm3] 2L_1442696_SNP [dm6]	C	G	3.592e^-4	1	UTR_5_PRIME CG43402 UPSTREAM CG43402
3R	9868203	3R_9868203_SNP [dm3] 3R_14042481_SNP [dm6]	G	C	3.596e^-4	1	INTERGENIC
X	4378148	X_4378148_INS [dm3] X_4484115_INS [dm6]	A	AA	3.602e^-4	1	UTR_3_PRIME bi INTRON CR32773
3L	3627684	3L_3627684_SNP [dm3] 3L_3627684_SNP [dm6]	G	T	3.611e^-4	1	INTRON dar1	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	19224465	X_19224465_SNP [dm3] X_19330432_SNP [dm6]	C	A	3.625e^-4	1	INTRON nAChRalpha7
X	14258189	X_14258189_SNP [dm3] X_14364156_SNP [dm6]	A	G	3.626e^-4	1	INTRON dpr8
2L	10306385	2L_10306385_SNP [dm3] 2L_10306385_SNP [dm6]	G	A	3.647e^-4	1	UPSTREAM CG4968 INTRON CG5390	TF binding site mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_zfh1
3L	13183742	3L_13183742_SNP [dm3] 3L_13190642_SNP [dm6]	A	T	3.653e^-4	1	INTERGENIC
3L	7220792	3L_7220792_SNP [dm3] 3L_7227692_SNP [dm6]	A	T	3.655e^-4	1	INTERGENIC
3L	19552049	3L_19552049_SNP [dm3] 3L_19558949_SNP [dm6]	G	A	3.665e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5226617	X_5226617_SNP [dm3] X_5332584_SNP [dm6]	G	T	3.674e^-4	1	UPSTREAM CanB DOWNSTREAM XRCC1 INTRON CanB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19986726	3R_19986726_SNP [dm3] 3R_24161004_SNP [dm6]	G	A	3.674e^-4	1	SYNONYMOUS_CODING Myo95E UPSTREAM CG6182	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11928070	2L_11928070_SNP [dm3] 2L_11928070_SNP [dm6]	A	C	3.684e^-4	1	INTRON Pde1c
2L	20331664	2L_20331664_INS [dm3] 2L_20331664_INS [dm6]	C	CC	3.687e^-4	1	INTRON spir
2L	13054779	2L_13054779_SNP [dm3] 2L_13054779_SNP [dm6]	G	C	3.690e^-4	1	INTRON CG9932
3R	6342309	3R_6342309_SNP [dm3] 3R_10516587_SNP [dm6]	C	T	3.693e^-4	1	INTRON hth
2L	14871752	2L_14871752_SNP [dm3] 2L_14871752_SNP [dm6]	C	T	3.694e^-4	1	SYNONYMOUS_CODING CG4480
2R	11436539	2R_11436539_SNP [dm3] 2R_15549034_SNP [dm6]	C	T	3.700e^-4	1	INTRON CG8192
3L	13292712	3L_13292712_INS [dm3] 3L_13299612_INS [dm6]	A	ATT	3.702e^-4	1	UPSTREAM CG42481 DOWNSTREAM CR45254 & 1 other INTERGENIC
3R	14287649	3R_14287649_SNP [dm3] 3R_18461927_SNP [dm6]	C	A	3.703e^-4	1	INTRON fru
3R	14287651	3R_14287651_SNP [dm3] 3R_18461929_SNP [dm6]	G	A	3.703e^-4	1	INTRON fru
3L	11504300	3L_11504300_SNP [dm3] 3L_11511200_SNP [dm6]	T	C	3.708e^-4	1	UPSTREAM CG33272 DOWNSTREAM Sgs7 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7388568	3L_7388568_SNP [dm3] 3L_7395468_SNP [dm6]	A	G	3.713e^-4	1	UPSTREAM CG32379 INTRON CG8563
X	15538071	X_15538071_SNP [dm3] X_15644038_SNP [dm6]	C	T	3.732e^-4	1	UPSTREAM CG8117 INTERGENIC
3R	25155332	3R_25155332_SNP [dm3] 3R_29329610_SNP [dm6]	T	C	3.732e^-4	1	INTERGENIC
3R	11233083	3R_11233083_SNP [dm3] 3R_15407361_SNP [dm6]	G	A	3.741e^-4	1	UPSTREAM CG6125 INTERGENIC
3L	12150095	3L_12150095_SNP [dm3] 3L_12156995_SNP [dm6]	G	T	3.741e^-4	1	DOWNSTREAM CG9760 & 1 other INTERGENIC
2L	8181680	2L_8181680_SNP [dm3] 2L_8181680_SNP [dm6]	G	A	3.747e^-4	1	DOWNSTREAM Piezo INTRON Piezo
3R	2398797	3R_2398797_SNP [dm3] 3R_6573075_SNP [dm6]	G	C	3.751e^-4	1	INTRON dpr11
3L	7387484	3L_7387484_SNP [dm3] 3L_7394384_SNP [dm6]	A	T	3.761e^-4	1	INTRON CG8563	TF binding site mE1_TFBS_cad
2R	19824958	2R_19824958_SNP [dm3] 2R_23937435_SNP [dm6]	T	C	3.763e^-4	1	UTR_3_PRIME CG3735
2R	19825183	2R_19825183_SNP [dm3] 2R_23937660_SNP [dm6]	G	T	3.763e^-4	1	NON_SYNONYMOUS_CODING CG3735	TF binding site mE1_TFBS_sens
3L	7388559	3L_7388559_SNP [dm3] 3L_7395459_SNP [dm6]	A	C	3.764e^-4	1	UPSTREAM CG32379 INTRON CG8563
2L	13990665	2L_13990665_SNP [dm3] 2L_13990665_SNP [dm6]	G	T	3.771e^-4	1	INTRON rk
3L	19997324	3L_19997324_SNP [dm3] 3L_20004224_SNP [dm6]	G	A	3.773e^-4	1	NON_SYNONYMOUS_CODING CG7668	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	16157906	3L_16157906_SNP [dm3] 3L_16164806_SNP [dm6]	G	A	3.788e^-4	1	UPSTREAM CG5151 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	10046864	2L_10046864_SNP [dm3] 2L_10046864_SNP [dm6]	C	G	3.803e^-4	1	INTERGENIC
3L	16724764	3L_16724764_SNP [dm3] 3L_16731664_SNP [dm6]	T	A	3.803e^-4	1	UPSTREAM Dbp73D INTERGENIC	TF binding site mE1_TFBS_HSA
2L	2094277	2L_2094277_SNP [dm3] 2L_2094277_SNP [dm6]	T	C	3.804e^-4	1	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
X	3351110	X_3351110_SNP [dm3] X_3457077_SNP [dm6]	G	T	3.811e^-4	1	INTRON CR44999
2L	8589464	2L_8589464_INS [dm3] 2L_8589464_INS [dm6]	G	GTTTTGCTTTCCAC...	3.817e^-4	1	DOWNSTREAM CR43855 INTRON Sema-1a	TF binding site mE1_TFBS_kn
3L	13231648	3L_13231648_SNP [dm3] 3L_13238548_SNP [dm6]	A	T	3.819e^-4	1	INTRON caps
X	13753258	X_13753258_SNP [dm3] X_13859225_SNP [dm6]	A	T	3.827e^-4	1	UTR_3_PRIME mamo INTRON mamo
2R	9253631	2R_9253631_SNP [dm3] 2R_13366126_SNP [dm6]	T	G	3.830e^-4	1	INTERGENIC
3R	8439278	3R_8439278_SNP [dm3] 3R_12613556_SNP [dm6]	A	G	3.835e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3743095	X_3743095_SNP [dm3] X_3849062_SNP [dm6]	C	A	3.841e^-4	1	INTRON ec	TF binding site BDTNP1_TFBS_dl
3R	1327592	3R_1327592_SNP [dm3] 3R_5501870_SNP [dm6]	T	C	3.843e^-4	1	INTRON CG31547
3L	5616798	3L_5616798_SNP [dm3] 3L_5623698_SNP [dm6]	A	G	3.871e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16335335	3L_16335335_DEL [dm3] 3L_16342235_DEL [dm6]	ATTA	A	3.886e^-4	1	INTRON CG4998	TF binding site mE1_TFBS_cad
2R	17908527	2R_17908527_SNP [dm3] 2R_22021022_SNP [dm6]	G	A	3.888e^-4	1	INTRON CG34370
2L	13642846	2L_13642846_SNP [dm3] 2L_13642846_SNP [dm6]	T	C	3.889e^-4	1	UPSTREAM ics EXON CR44726	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	14951300	X_14951300_SNP [dm3] X_15057267_SNP [dm6]	C	T	3.911e^-4	1	INTRON hiw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9545474	3R_9545474_SNP [dm3] 3R_13719752_SNP [dm6]	A	G	3.916e^-4	1	INTRON CG34383	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14237860	3R_14237860_SNP [dm3] 3R_18412138_SNP [dm6]	G	C	3.916e^-4	1	UPSTREAM CG10864 INTRON CG31122	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_Trl
2L	15253286	2L_15253286_SNP [dm3] 2L_15253286_SNP [dm6]	C	G	3.921e^-4	1	SYNONYMOUS_CODING dao DOWNSTREAM dao
3R	2240192	3R_2240192_SNP [dm3] 3R_6414470_SNP [dm6]	G	T	3.929e^-4	1	INTRON gpp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	15398591	2R_15398591_SNP [dm3] 2R_19511086_SNP [dm6]	G	A	3.934e^-4	1	NON_SYNONYMOUS_CODING Ir56c DOWNSTREAM Ir56d
3R	1333694	3R_1333694_SNP [dm3] 3R_5507972_SNP [dm6]	G	A	3.944e^-4	1	DOWNSTREAM Nmdar1 INTERGENIC
3R	1348951	3R_1348951_SNP [dm3] 3R_5523229_SNP [dm6]	C	A	3.944e^-4	1	UTR_5_PRIME Nmdar1 UPSTREAM CR43845 INTRON Itp-r83A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	896048	3L_896048_SNP [dm3] 3L_896048_SNP [dm6]	T	G	3.944e^-4	1	UTR_5_PRIME CG34056 DOWNSTREAM CG32479
2L	3238059	2L_3238059_SNP [dm3] 2L_3238059_SNP [dm6]	C	A	3.952e^-4	1	INTERGENIC
2L	17797212	2L_17797212_SNP [dm3] 2L_17797212_SNP [dm6]	T	A	3.954e^-4	1	INTRON CadN2
3R	17362949	3R_17362949_SNP [dm3] 3R_21537227_SNP [dm6]	G	A	3.959e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
3R	17362962	3R_17362962_SNP [dm3] 3R_21537240_SNP [dm6]	G	A	3.959e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
X	16226823	X_16226823_SNP [dm3] X_16332790_SNP [dm6]	A	C	3.966e^-4	1	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
X	19924318	X_19924318_SNP [dm3] X_20030285_SNP [dm6]	A	G	3.966e^-4	1	INTRON Dop2R	TF binding site mE1_TFBS_chinmo
3L	11390198	3L_11390198_SNP [dm3] 3L_11397098_SNP [dm6]	T	C	3.976e^-4	1	UPSTREAM CG44362 INTERGENIC
3L	17562601	3L_17562601_SNP [dm3] 3L_17569501_SNP [dm6]	A	G	3.977e^-4	1	INTRON Eip74EF
3L	7785797	3L_7785797_SNP [dm3] 3L_7792697_SNP [dm6]	A	G	3.983e^-4	1	INTRON CG32369
3L	319569	3L_319569_SNP [dm3] 3L_319569_SNP [dm6]	C	T	3.986e^-4	1	UTR_5_PRIME fwd INTRON fwd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	3838308	3L_3838308_SNP [dm3] 3L_3838308_SNP [dm6]	A	T	3.996e^-4	1	SYNONYMOUS_CODING enc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	11744192	3L_11744192_SNP [dm3] 3L_11751092_SNP [dm6]	G	T	4.001e^-4	1	UPSTREAM Gr68a INTRON CG6024
3R	6822982	3R_6822982_SNP [dm3] 3R_10997260_SNP [dm6]	G	C	4.009e^-4	1	INTRON CG34114
3L	7392677	3L_7392677_SNP [dm3] 3L_7399577_SNP [dm6]	T	C	4.011e^-4	1	SYNONYMOUS_CODING CG8562 UPSTREAM CG18417
3L	16725319	3L_16725319_INS [dm3] 3L_16732219_INS [dm6]	T	TTC	4.015e^-4	1	INTERGENIC
3L	2173011	3L_2173011_SNP [dm3] 3L_2173011_SNP [dm6]	G	A	4.020e^-4	1	UTR_3_PRIME CG15820 UPSTREAM CR15821	TF binding site mE1_TFBS_cad
3L	7830566	3L_7830566_SNP [dm3] 3L_7837466_SNP [dm6]	C	T	4.027e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3L	3853385	3L_3853385_SNP [dm3] 3L_3853385_SNP [dm6]	C	T	4.030e^-4	1	INTRON Awh
3L	3854900	3L_3854900_SNP [dm3] 3L_3854900_SNP [dm6]	C	T	4.030e^-4	1	INTRON Awh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3855340	3L_3855340_INS [dm3] 3L_3855340_INS [dm6]	T	TG	4.030e^-4	1	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	3859020	3L_3859020_SNP [dm3] 3L_3859020_SNP [dm6]	T	A	4.030e^-4	1	INTRON Awh	TF binding site mE1_TFBS_cad
2L	12761717	2L_12761717_SNP [dm3] 2L_12761717_SNP [dm6]	C	T	4.035e^-4	1	NON_SYNONYMOUS_CODING CG15483
2L	2094283	2L_2094283_SNP [dm3] 2L_2094283_SNP [dm6]	T	A	4.041e^-4	1	INTRON dpr3	TF binding site BDTNP1_TFBS_twi
3L	7836056	3L_7836056_SNP [dm3] 3L_7842956_SNP [dm6]	A	T	4.048e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2L	16262120	2L_16262120_SNP [dm3] 2L_16262120_SNP [dm6]	A	G	4.054e^-4	1	UPSTREAM CG4935 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	2293360	2L_2293360_SNP [dm3] 2L_2293360_SNP [dm6]	G	C	4.062e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	9503029	2R_9503029_SNP [dm3] 2R_13615524_SNP [dm6]	G	A	4.064e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14979307	2R_14979307_SNP [dm3] 2R_19091802_SNP [dm6]	G	T	4.066e^-4	1	INTRON 5-HT1A
X	20846125	X_20846125_SNP [dm3] X_20975098_SNP [dm6]	G	C	4.070e^-4	1	INTERGENIC
2R	19824790	2R_19824790_SNP [dm3] 2R_23937267_SNP [dm6]	G	A	4.076e^-4	1	UTR_3_PRIME CG3735 DOWNSTREAM CG3735
3R	11891300	3R_11891300_SNP [dm3] 3R_16065578_SNP [dm6]	A	G	4.079e^-4	1	SPLICE_SITE_REGION CG10185 INTRON CG10185	TF binding site mE1_TFBS_cad
3L	1572248	3L_1572248_SNP [dm3] 3L_1572248_SNP [dm6]	G	A	4.085e^-4	1	INTRON CG12004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20230443	2L_20230443_SNP [dm3] 2L_20230443_SNP [dm6]	C	T	4.088e^-4	1	INTERGENIC
3L	5603370	3L_5603370_SNP [dm3] 3L_5610270_SNP [dm6]	T	A	4.089e^-4	1	INTERGENIC
3L	4730732	3L_4730732_SNP [dm3] 3L_4730732_SNP [dm6]	A	G	4.097e^-4	1	INTRON RhoGEF64C
X	14258229	X_14258229_SNP [dm3] X_14364196_SNP [dm6]	A	T	4.100e^-4	1	INTRON dpr8
3R	2222238	3R_2222238_SNP [dm3] 3R_6396516_SNP [dm6]	A	T	4.103e^-4	1	INTRON Dmtn
3R	11409735	3R_11409735_SNP [dm3] 3R_15584013_SNP [dm6]	G	A	4.114e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7279426	3L_7279426_SNP [dm3] 3L_7286326_SNP [dm6]	C	G	4.119e^-4	1	INTRON unc-13-4A
2R	7403895	2R_7403895_SNP [dm3] 2R_11516390_SNP [dm6]	T	C	4.119e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7830496	3L_7830496_SNP [dm3] 3L_7837396_SNP [dm6]	A	T	4.129e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
3R	15876864	3R_15876864_SNP [dm3] 3R_20051142_SNP [dm6]	C	G	4.158e^-4	1	INTRON CG17193
2L	7000226	2L_7000226_SNP [dm3] 2L_7000226_SNP [dm6]	G	T	4.159e^-4	1	INTRON uif
3R	1285579	3R_1285579_SNP [dm3] 3R_5459857_SNP [dm6]	G	T	4.167e^-4	1	SYNONYMOUS_CODING PEK
3R	18785328	3R_18785328_SNP [dm3] 3R_22959606_SNP [dm6]	G	A	4.177e^-4	1	SYNONYMOUS_CODING klg
X	14654781	X_14654781_SNP [dm3] X_14760748_SNP [dm6]	A	T	4.177e^-4	1	INTRON CG15890
3L	2469167	3L_2469167_SNP [dm3] 3L_2469167_SNP [dm6]	A	T	4.180e^-4	1	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	19271787	2L_19271787_SNP [dm3] 2L_19271787_SNP [dm6]	T	A	4.183e^-4	1	EXON CR44190
3R	2486350	3R_2486350_DEL [dm3] 3R_6660628_DEL [dm6]	TT	T	4.192e^-4	1	UPSTREAM agt DOWNSTREAM lab INTERGENIC
3L	18226175	3L_18226175_SNP [dm3] 3L_18233075_SNP [dm6]	C	T	4.212e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18726233	3L_18726233_SNP [dm3] 3L_18733133_SNP [dm6]	G	T	4.217e^-4	1	INTERGENIC
2L	5591303	2L_5591303_SNP [dm3] 2L_5591303_SNP [dm6]	A	G	4.246e^-4	1	INTERGENIC
X	20312374	X_20312374_DEL [dm3] X_20441347_DEL [dm6]	CC	A	4.247e^-4	1	INTRON CG1695	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6818073	3L_6818073_SNP [dm3] 3L_6824973_SNP [dm6]	C	T	4.256e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
2R	3396210	2R_3396210_SNP [dm3] 2R_7508705_SNP [dm6]	C	T	4.283e^-4	1	SYNONYMOUS_CODING CG12736 DOWNSTREAM didum
2L	12116099	2L_12116099_SNP [dm3] 2L_12116099_SNP [dm6]	G	T	4.288e^-4	1	INTRON CG17211
3R	9372010	3R_9372010_SNP [dm3] 3R_13546288_SNP [dm6]	C	T	4.289e^-4	1	UPSTREAM CG31337 INTERGENIC
3L	7388625	3L_7388625_SNP [dm3] 3L_7395525_SNP [dm6]	A	G	4.292e^-4	1	UPSTREAM CG32379 INTRON CG8563
3L	15699993	3L_15699993_SNP [dm3] 3L_15706893_SNP [dm6]	T	C	4.294e^-4	1	INTERGENIC
3L	15634254	3L_15634254_SNP [dm3] 3L_15641154_SNP [dm6]	G	T	4.296e^-4	1	INTRON comm3
2L	20337767	2L_20337767_SNP [dm3] 2L_20337767_SNP [dm6]	A	T	4.298e^-4	1	INTRON spir
2L	13071078	2L_13071078_SNP [dm3] 2L_13071078_SNP [dm6]	G	A	4.300e^-4	1	INTERGENIC
2L	17176063	2L_17176063_SNP [dm3] 2L_17176063_SNP [dm6]	G	C	4.301e^-4	1	UPSTREAM Gr36a EXON CR44394
3L	5281401	3L_5281401_SNP [dm3] 3L_5288301_SNP [dm6]	A	G	4.305e^-4	1	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16040875	2R_16040875_DEL [dm3] 2R_20153370_DEL [dm6]	AAGTATTTGGCCTA...	A	4.312e^-4	1	INTERGENIC
3L	3845157	3L_3845157_SNP [dm3] 3L_3845157_SNP [dm6]	A	T	4.318e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9647162	3L_9647162_SNP [dm3] 3L_9654062_SNP [dm6]	A	G	4.326e^-4	1	INTRON fry & 1 other
3R	6366796	3R_6366796_SNP [dm3] 3R_10541074_SNP [dm6]	G	A	4.327e^-4	1	INTRON hth
3R	6770549	3R_6770549_SNP [dm3] 3R_10944827_SNP [dm6]	A	T	4.329e^-4	1	INTERGENIC
2L	1030448	2L_1030448_SNP [dm3] 2L_1030448_SNP [dm6]	C	T	4.336e^-4	1	INTRON IA-2
3L	9864719	3L_9864719_SNP [dm3] 3L_9871619_SNP [dm6]	A	G	4.338e^-4	1	DOWNSTREAM CG8108 INTERGENIC
3L	2619483	3L_2619483_SNP [dm3] 3L_2619483_SNP [dm6]	C	T	4.338e^-4	1	INTRON Pxn
3R	19071223	3R_19071223_SNP [dm3] 3R_23245501_SNP [dm6]	G	T	4.349e^-4	1	UTR_5_PRIME CG4467
2L	14463818	2L_14463818_SNP [dm3] 2L_14463818_SNP [dm6]	C	G	4.358e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_Kr
3L	3575581	3L_3575581_SNP [dm3] 3L_3575581_SNP [dm6]	G	T	4.362e^-4	1	INTRON Eip63E
3L	3575605	3L_3575605_SNP [dm3] 3L_3575605_SNP [dm6]	T	A	4.362e^-4	1	INTRON Eip63E
3L	3575621	3L_3575621_SNP [dm3] 3L_3575621_SNP [dm6]	G	C	4.362e^-4	1	INTRON Eip63E
2R	9253612	2R_9253612_SNP [dm3] 2R_13366107_SNP [dm6]	C	T	4.400e^-4	1	INTERGENIC
2R	10243353	2R_10243353_SNP [dm3] 2R_14355848_SNP [dm6]	G	T	4.402e^-4	1	UTR_3_PRIME CG8617 DOWNSTREAM CG8613	TF binding site mE1_TFBS_cad
3L	3855343	3L_3855343_SNP [dm3] 3L_3855343_SNP [dm6]	T	C	4.408e^-4	1	INTRON Awh	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	2532205	3R_2532205_SNP [dm3] 3R_6706483_SNP [dm6]	A	T	4.416e^-4	1	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	16673400	3L_16673400_SNP [dm3] 3L_16680300_SNP [dm6]	G	A	4.417e^-4	1	INTRON Lasp & 1 other
2L	16562449	2L_16562449_SNP [dm3] 2L_16562449_SNP [dm6]	T	C	4.420e^-4	1	INTRON CG42389
3L	15202372	3L_15202372_SNP [dm3] 3L_15209272_SNP [dm6]	T	A	4.422e^-4	1	DOWNSTREAM CG6888 INTERGENIC
3R	1487947	3R_1487947_SNP [dm3] 3R_5662225_SNP [dm6]	C	T	4.427e^-4	1	INTRON CG1109
3L	14322847	3L_14322847_SNP [dm3] 3L_14329747_SNP [dm6]	A	C	4.446e^-4	1	UTR_3_PRIME CG13482 INTRON fz
2L	7468052	2L_7468052_SNP [dm3] 2L_7468052_SNP [dm6]	C	T	4.449e^-4	1	INTRON CG6055
X	19550611	X_19550611_SNP [dm3] X_19656578_SNP [dm6]	T	G	4.453e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad
X	5224774	X_5224774_SNP [dm3] X_5330741_SNP [dm6]	G	A	4.459e^-4	1	SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	5224782	X_5224782_SNP [dm3] X_5330749_SNP [dm6]	C	T	4.459e^-4	1	NON_SYNONYMOUS_CODING XRCC1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1504329	3L_1504329_SNP [dm3] 3L_1504329_SNP [dm6]	A	G	4.476e^-4	1	INTRON Psa & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16159445	3L_16159445_SNP [dm3] 3L_16166345_SNP [dm6]	A	C	4.483e^-4	1	INTERGENIC
3L	7276023	3L_7276023_SNP [dm3] 3L_7282923_SNP [dm6]	C	T	4.495e^-4	1	INTRON unc-13-4A
3L	5464470	3L_5464470_SNP [dm3] 3L_5471370_SNP [dm6]	C	T	4.498e^-4	1	INTERGENIC
3L	16287032	3L_16287032_SNP [dm3] 3L_16293932_SNP [dm6]	C	A	4.503e^-4	1	DOWNSTREAM CG4962 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	10049229	2L_10049229_SNP [dm3] 2L_10049229_SNP [dm6]	G	T	4.503e^-4	1	UPSTREAM CG33301 INTERGENIC
X	16295784	X_16295784_SNP [dm3] X_16401751_SNP [dm6]	A	G	4.510e^-4	1	SYNONYMOUS_CODING CG9981	TF binding site mE1_TFBS_HSA
X	16295813	X_16295813_SNP [dm3] X_16401780_SNP [dm6]	A	G	4.510e^-4	1	SYNONYMOUS_CODING CG9981
3R	7947385	3R_7947385_SNP [dm3] 3R_12121663_SNP [dm6]	A	T	4.510e^-4	1	UTR_3_PRIME CG4702
2R	3523345	2R_3523345_SNP [dm3] 2R_7635840_SNP [dm6]	T	C	4.516e^-4	1	UPSTREAM CR45131 INTRON CG43340
2R	8622357	2R_8622357_SNP [dm3] 2R_12734852_SNP [dm6]	G	A	4.519e^-4	1	INTRON CG42663
2R	8623099	2R_8623099_SNP [dm3] 2R_12735594_SNP [dm6]	C	T	4.519e^-4	1	INTRON CG42663
2L	2505522	2L_2505522_SNP [dm3] 2L_2505522_SNP [dm6]	A	T	4.533e^-4	1	INTERGENIC
2L	11790649	2L_11790649_SNP [dm3] 2L_11790649_SNP [dm6]	C	A	4.533e^-4	1	NON_SYNONYMOUS_CODING CG14932 DOWNSTREAM Tsp33B	TF binding site mE1_TFBS_eve
2L	20318674	2L_20318674_SNP [dm3] 2L_20318674_SNP [dm6]	T	G	4.546e^-4	1	INTRON spir
2L	11919197	2L_11919197_SNP [dm3] 2L_11919197_SNP [dm6]	C	T	4.556e^-4	1	INTRON Pde1c
2L	6320177	2L_6320177_SNP [dm3] 2L_6320177_SNP [dm6]	T	G	4.559e^-4	1	INTRON Ddr
3L	8115095	3L_8115095_SNP [dm3] 3L_8121995_SNP [dm6]	T	A	4.562e^-4	1	NON_SYNONYMOUS_CODING ldbr DOWNSTREAM msk	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	13964075	2L_13964075_SNP [dm3] 2L_13964075_SNP [dm6]	G	C	4.568e^-4	1	NON_SYNONYMOUS_CODING NimB1 DOWNSTREAM NimA & 1 other	TF binding site mE1_TFBS_chinmo
X	16227048	X_16227048_SNP [dm3] X_16333015_SNP [dm6]	A	C	4.578e^-4	1	UPSTREAM CG9921 & 1 other INTRON CG9921	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
2R	20224011	2R_20224011_SNP [dm3] 2R_24336488_SNP [dm6]	T	C	4.585e^-4	1	UPSTREAM CR44282 INTERGENIC
2R	5903202	2R_5903202_INS [dm3] 2R_10015697_INS [dm6]	T	TG	4.599e^-4	1	INTRON Pka-R2
3L	10465495	3L_10465495_SNP [dm3] 3L_10472395_SNP [dm6]	T	C	4.610e^-4	1	INTERGENIC
3L	7388482	3L_7388482_SNP [dm3] 3L_7395382_SNP [dm6]	C	A	4.617e^-4	1	UPSTREAM CG32379 INTRON CG8563
2L	926503	2L_926503_SNP [dm3] 2L_926503_SNP [dm6]	T	C	4.625e^-4	1	INTRON CG4341
3L	15037293	3L_15037293_SNP [dm3] 3L_15044193_SNP [dm6]	C	G	4.630e^-4	1	UPSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3083118	3L_3083118_SNP [dm3] 3L_3083118_SNP [dm6]	G	A	4.635e^-4	1	INTRON CG11486
2L	5947154	2L_5947154_SNP [dm3] 2L_5947154_SNP [dm6]	C	T	4.644e^-4	1	SYNONYMOUS_CODING Gpdh DOWNSTREAM CR44986
3L	4021805	3L_4021805_SNP [dm3] 3L_4021805_SNP [dm6]	C	T	4.660e^-4	1	SYNONYMOUS_CODING Mul1 DOWNSTREAM fd64A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	4145741	2R_4145741_SNP [dm3] 2R_8258236_SNP [dm6]	T	C	4.662e^-4	1	INTERGENIC
2L	10867312	2L_10867312_SNP [dm3] 2L_10867312_SNP [dm6]	C	G	4.670e^-4	1	INTERGENIC
3L	3627213	3L_3627213_SNP [dm3] 3L_3627213_SNP [dm6]	T	C	4.671e^-4	1	INTRON dar1
3L	7387968	3L_7387968_SNP [dm3] 3L_7394868_SNP [dm6]	C	T	4.679e^-4	1	INTRON CG8563
2L	13643005	2L_13643005_SNP [dm3] 2L_13643005_SNP [dm6]	G	A	4.682e^-4	1	UPSTREAM ics EXON CR44726
2L	4295391	2L_4295391_SNP [dm3] 2L_4295391_SNP [dm6]	C	A	4.691e^-4	1	NON_SYNONYMOUS_CODING tutl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5307689	3R_5307689_SNP [dm3] 3R_9481967_SNP [dm6]	C	A	4.694e^-4	1	INTRON CG16779
2R	4084722	2R_4084722_SNP [dm3] 2R_8197217_SNP [dm6]	G	A	4.696e^-4	1	INTRON LRP1
3L	3992892	3L_3992892_SNP [dm3] 3L_3992892_SNP [dm6]	A	T	4.697e^-4	1	UTR_3_PRIME scrt
2L	12983089	2L_12983089_SNP [dm3] 2L_12983089_SNP [dm6]	G	T	4.702e^-4	1	INTERGENIC
3L	13582668	3L_13582668_INS [dm3] 3L_13589568_INS [dm6]	A	ACA	4.718e^-4	1	INTRON bru-3
3L	11505068	3L_11505068_SNP [dm3] 3L_11511968_SNP [dm6]	G	C	4.727e^-4	1	UPSTREAM Sgs3 INTERGENIC	regulatory region REDfly_CRMs transposable element FlyBase
2R	19066841	2R_19066841_SNP [dm3] 2R_23179318_SNP [dm6]	G	T	4.737e^-4	1	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17503093	3L_17503093_SNP [dm3] 3L_17509993_SNP [dm6]	G	C	4.744e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4379511	X_4379511_SNP [dm3] X_4485478_SNP [dm6]	A	C	4.746e^-4	1	UTR_3_PRIME bi INTRON CR32773
3L	16725322	3L_16725322_SNP [dm3] 3L_16732222_SNP [dm6]	A	T	4.747e^-4	1	INTERGENIC
2R	13392871	2R_13392871_INS [dm3] 2R_17505366_INS [dm6]	T	TT	4.749e^-4	1	INTRON CG43164	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA
3R	9742838	3R_9742838_SNP [dm3] 3R_13917116_SNP [dm6]	G	A	4.751e^-4	1	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	15428227	3L_15428227_SNP [dm3] 3L_15435127_SNP [dm6]	C	T	4.770e^-4	1	INTERGENIC
3L	15428450	3L_15428450_SNP [dm3] 3L_15435350_SNP [dm6]	C	T	4.775e^-4	1	INTERGENIC
3R	15982094	3R_15982094_SNP [dm3] 3R_20156372_SNP [dm6]	C	T	4.776e^-4	1	INTERGENIC
3R	2585624	3R_2585624_SNP [dm3] 3R_6759902_SNP [dm6]	A	G	4.777e^-4	1	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	8439340	3R_8439340_SNP [dm3] 3R_12613618_SNP [dm6]	C	T	4.783e^-4	1	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9477143	2R_9477143_SNP [dm3] 2R_13589638_SNP [dm6]	G	C	4.785e^-4	1	INTRON CG6191 & 1 other
2R	9174137	2R_9174137_SNP [dm3] 2R_13286632_SNP [dm6]	C	A	4.789e^-4	1	INTRON Dh31-R
X	9860725	X_9860725_SNP [dm3] X_9966692_SNP [dm6]	A	T	4.791e^-4	1	UTR_3_PRIME CG1889 & 1 other DOWNSTREAM CG43386
X	11195088	X_11195088_SNP [dm3] X_11301055_SNP [dm6]	C	T	4.797e^-4	1	INTRON CG44422
2L	7995707	2L_7995707_SNP [dm3] 2L_7995707_SNP [dm6]	T	G	4.815e^-4	1	INTRON CG7227 EXON CR44996	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17502997	3L_17502997_SNP [dm3] 3L_17509897_SNP [dm6]	T	A	4.816e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7830557	3L_7830557_SNP [dm3] 3L_7837457_SNP [dm6]	A	T	4.817e^-4	1	INTRON Pdp1	regulatory region REDfly_CRMs
2L	20169578	2L_20169578_SNP [dm3] 2L_20169578_SNP [dm6]	T	A	4.820e^-4	1	INTERGENIC	transposable element FlyBase
X	22182714	X_22182714_INS [dm3] X_22780878_INS [dm6]	A	AAAGATA	4.821e^-4	1	INTRON CR44997
X	22182716	X_22182716_SNP [dm3] X_22780880_SNP [dm6]	T	C	4.821e^-4	1	INTRON CR44997
X	22182719	X_22182719_SNP [dm3] X_22780883_SNP [dm6]	T	C	4.821e^-4	1	INTRON CR44997
X	22182730	X_22182730_SNP [dm3] X_22780894_SNP [dm6]	A	C	4.821e^-4	1	INTRON CR44997
X	22182731	X_22182731_INS [dm3] X_22780895_INS [dm6]	T	TT	4.821e^-4	1	INTRON CR44997
X	3937701	X_3937701_SNP [dm3] X_4043668_SNP [dm6]	C	A	4.823e^-4	1	INTERGENIC
3L	6619793	3L_6619793_SNP [dm3] 3L_6626693_SNP [dm6]	C	A	4.824e^-4	1	INTRON GluRIA
2R	14030789	2R_14030789_SNP [dm3] 2R_18143284_SNP [dm6]	C	A	4.826e^-4	1	DOWNSTREAM snoRNA:Psi18S-1347a & 1 other INTRON pAbp EXON snoRNA:Psi18S-1347c	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	930412	2L_930412_SNP [dm3] 2L_930412_SNP [dm6]	G	T	4.826e^-4	1	SYNONYMOUS_CODING CG4341 INTRON CG4341
3L	10202170	3L_10202170_SNP [dm3] 3L_10209070_SNP [dm6]	C	T	4.843e^-4	1	INTERGENIC
3L	10202529	3L_10202529_SNP [dm3] 3L_10209429_SNP [dm6]	C	T	4.843e^-4	1	INTERGENIC
3L	10202542	3L_10202542_SNP [dm3] 3L_10209442_SNP [dm6]	C	T	4.843e^-4	1	INTERGENIC
3L	3085948	3L_3085948_SNP [dm3] 3L_3085948_SNP [dm6]	T	C	4.844e^-4	1	SYNONYMOUS_CODING CG11486	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	3510782	2R_3510782_SNP [dm3] 2R_7623277_SNP [dm6]	A	G	4.847e^-4	1	UTR_5_PRIME CG43340 UPSTREAM CR44444	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	2504779	2L_2504779_SNP [dm3] 2L_2504779_SNP [dm6]	C	A	4.848e^-4	1	INTERGENIC
2R	9927519	2R_9927519_SNP [dm3] 2R_14040014_SNP [dm6]	G	A	4.852e^-4	1	SYNONYMOUS_CODING mam INTRON mam	TF binding site mE1_TFBS_chinmo
3R	6810410	3R_6810410_SNP [dm3] 3R_10984688_SNP [dm6]	G	C	4.860e^-4	1	INTRON CG34114
3L	10712258	3L_10712258_SNP [dm3] 3L_10719158_SNP [dm6]	T	C	4.866e^-4	1	INTERGENIC
X	22198229	X_22198229_SNP [dm3] X_22796393_SNP [dm6]	C	T	4.878e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22198241	X_22198241_SNP [dm3] X_22796405_SNP [dm6]	A	T	4.878e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	22198939	X_22198939_SNP [dm3] X_22797103_SNP [dm6]	C	T	4.878e^-4	1	INTRON CR44997
X	14950858	X_14950858_SNP [dm3] X_15056825_SNP [dm6]	A	C	4.880e^-4	1	SYNONYMOUS_CODING hiw	TF binding site mE1_TFBS_chinmo
X	22182727	X_22182727_SNP [dm3] X_22780891_SNP [dm6]	T	C	4.885e^-4	1	INTRON CR44997
2L	10487588	2L_10487588_SNP [dm3] 2L_10487588_SNP [dm6]	T	C	4.886e^-4	1	INTRON CG7456	TF binding site mE1_TFBS_inv
2L	20327338	2L_20327338_SNP [dm3] 2L_20327338_SNP [dm6]	A	C	4.888e^-4	1	INTRON spir
2L	20327340	2L_20327340_SNP [dm3] 2L_20327340_SNP [dm6]	T	C	4.888e^-4	1	INTRON spir
X	596110	X_596110_SNP [dm3] X_702077_SNP [dm6]	T	A	4.896e^-4	1	INTRON sdk
2R	18686285	2R_18686285_DEL [dm3] 2R_22798780_DEL [dm6]	ATGAA	A	4.901e^-4	1	UPSTREAM blw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2R	5953070	2R_5953070_SNP [dm3] 2R_10065565_SNP [dm6]	G	C	4.905e^-4	1	SYNONYMOUS_CODING CG2292	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17476784	3L_17476784_SNP [dm3] 3L_17483684_SNP [dm6]	A	G	4.925e^-4	1	INTRON CG6333
2R	8622821	2R_8622821_SNP [dm3] 2R_12735316_SNP [dm6]	T	A	4.925e^-4	1	INTRON CG42663
3L	17401226	3L_17401226_SNP [dm3] 3L_17408126_SNP [dm6]	A	G	4.925e^-4	1	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	3846156	3L_3846156_SNP [dm3] 3L_3846156_SNP [dm6]	C	G	4.930e^-4	1	UPSTREAM Awh INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	3845170	3L_3845170_SNP [dm3] 3L_3845170_SNP [dm6]	C	G	4.937e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	4357029	3L_4357029_SNP [dm3] 3L_4357029_SNP [dm6]	C	G	4.941e^-4	1	INTRON Cip4
3R	1715613	3R_1715613_SNP [dm3] 3R_5889891_SNP [dm6]	C	T	4.959e^-4	1	INTRON CG34113	TF binding site BDTNP1_TFBS_da
3L	3915939	3L_3915939_SNP [dm3] 3L_3915939_SNP [dm6]	T	G	4.970e^-4	1	INTRON Eip63F-1
2R	4990790	2R_4990790_SNP [dm3] 2R_9103285_SNP [dm6]	G	T	4.971e^-4	1	UTR_5_PRIME Vang DOWNSTREAM CG8777	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1441522	2L_1441522_SNP [dm3] 2L_1441522_SNP [dm6]	G	A	4.972e^-4	1	INTERGENIC
3R	20022991	3R_20022991_SNP [dm3] 3R_24197269_SNP [dm6]	T	G	4.980e^-4	1	UTR_3_PRIME twin DOWNSTREAM twin & 1 other
2R	9173068	2R_9173068_SNP [dm3] 2R_13285563_SNP [dm6]	G	T	4.983e^-4	1	INTRON Dh31-R
2L	6021191	2L_6021191_SNP [dm3] 2L_6021191_SNP [dm6]	T	C	4.993e^-4	1	INTRON CG13996	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10741790	3L_10741790_SNP [dm3] 3L_10748690_SNP [dm6]	T	A	5.014e^-4	1	INTERGENIC
3L	16724987	3L_16724987_SNP [dm3] 3L_16731887_SNP [dm6]	T	A	5.016e^-4	1	INTERGENIC
3L	3492919	3L_3492919_SNP [dm3] 3L_3492919_SNP [dm6]	A	T	5.018e^-4	1	INTRON CG42324
X	19550326	X_19550326_SNP [dm3] X_19656293_SNP [dm6]	G	A	5.019e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19135825	2R_19135825_SNP [dm3] 2R_23248302_SNP [dm6]	C	T	5.039e^-4	1	UPSTREAM RpL22-like INTERGENIC
2R	16157568	2R_16157568_SNP [dm3] 2R_20270063_SNP [dm6]	T	G	5.039e^-4	1	INTRON CG8908	TF binding site mE1_TFBS_cad
2R	5870851	2R_5870851_INS [dm3] 2R_9983346_INS [dm6]	C	TCGACAA	5.040e^-4	1	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	12173704	3L_12173704_SNP [dm3] 3L_12180604_SNP [dm6]	C	T	5.047e^-4	1	INTRON CAH2
3L	8895277	3L_8895277_SNP [dm3] 3L_8902177_SNP [dm6]	G	A	5.054e^-4	1	UPSTREAM TrpA1 INTRON TrpA1
X	22177682	X_22177682_SNP [dm3] X_22775846_SNP [dm6]	C	A	5.063e^-4	1	INTRON CR44997
X	3003606	X_3003606_SNP [dm3] X_3109573_SNP [dm6]	T	C	5.067e^-4	1	INTRON kirre
2L	12149193	2L_12149193_SNP [dm3] 2L_12149193_SNP [dm6]	A	G	5.077e^-4	1	INTRON CG31760
3L	1184387	3L_1184387_SNP [dm3] 3L_1184387_SNP [dm6]	G	A	5.080e^-4	1	INTERGENIC
2R	5903204	2R_5903204_SNP [dm3] 2R_10015699_SNP [dm6]	T	A	5.098e^-4	1	INTRON Pka-R2
3L	5524652	3L_5524652_DEL [dm3] 3L_5531552_DEL [dm6]	AAT	C	5.098e^-4	1	INTERGENIC
3L	8236960	3L_8236960_SNP [dm3] 3L_8243860_SNP [dm6]	G	A	5.107e^-4	1	INTRON Dscam4
3L	6817871	3L_6817871_SNP [dm3] 3L_6824771_SNP [dm6]	C	T	5.108e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	976484	3L_976484_SNP [dm3] 3L_976484_SNP [dm6]	T	C	5.111e^-4	1	INTRON Glut1	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22201478	X_22201478_SNP [dm3] X_22799642_SNP [dm6]	G	T	5.114e^-4	1	INTERGENIC
3R	25459149	3R_25459149_SNP [dm3] 3R_29633427_SNP [dm6]	G	C	5.118e^-4	1	INTRON Dop1R2
3R	1470834	3R_1470834_SNP [dm3] 3R_5645112_SNP [dm6]	A	C	5.126e^-4	1	INTRON MTA1-like
X	18358923	X_18358923_INS [dm3] X_18464890_INS [dm6]	GG	TTTAA	5.132e^-4	1	INTRON CG32547	TF binding site mE1_TFBS_chinmo
3L	6818065	3L_6818065_SNP [dm3] 3L_6824965_SNP [dm6]	T	A	5.133e^-4	1	INTERGENIC	regulatory region REDfly_CRMs
3L	10415609	3L_10415609_SNP [dm3] 3L_10422509_SNP [dm6]	T	A	5.136e^-4	1	INTERGENIC
2R	16758653	2R_16758653_SNP [dm3] 2R_20871148_SNP [dm6]	A	T	5.141e^-4	1	DOWNSTREAM IM14 INTRON Ipk1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	18484231	X_18484231_SNP [dm3] X_18590198_SNP [dm6]	C	T	5.155e^-4	1	INTERGENIC
3R	6817480	3R_6817480_SNP [dm3] 3R_10991758_SNP [dm6]	C	T	5.158e^-4	1	INTRON CG34114
2L	2875305	2L_2875305_SNP [dm3] 2L_2875305_SNP [dm6]	G	T	5.169e^-4	1	UPSTREAM CG31694 INTRON CG8814	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12289490	3L_12289490_SNP [dm3] 3L_12296390_SNP [dm6]	G	A	5.188e^-4	1	UPSTREAM CG4328 INTERGENIC
3L	13662986	3L_13662986_INS [dm3] 3L_13669886_INS [dm6]	T	TCTCGAGATTAAACAATTG...	5.191e^-4	1	INTRON bru-3
X	22183307	X_22183307_SNP [dm3] X_22781471_SNP [dm6]	C	T	5.195e^-4	1	INTRON CR44997	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	17503110	3L_17503110_INS [dm3] 3L_17510010_INS [dm6]	T	TACATGGATCCTTTTGA...	5.196e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11772345	3R_11772345_SNP [dm3] 3R_15946623_SNP [dm6]	T	C	5.203e^-4	1	INTRON Sap47
2L	5063992	2L_5063992_SNP [dm3] 2L_5063992_SNP [dm6]	A	G	5.214e^-4	1	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	12807359	2L_12807359_SNP [dm3] 2L_12807359_SNP [dm6]	G	C	5.237e^-4	1	DOWNSTREAM CR43818 INTERGENIC
X	3874452	X_3874452_INS [dm3] X_3980419_INS [dm6]	A	AGA	5.247e^-4	1	INTERGENIC
2R	11436518	2R_11436518_SNP [dm3] 2R_15549013_SNP [dm6]	T	C	5.265e^-4	1	INTRON CG8192
2R	11436521	2R_11436521_SNP [dm3] 2R_15549016_SNP [dm6]	A	T	5.265e^-4	1	INTRON CG8192
2L	1210779	2L_1210779_SNP [dm3] 2L_1210779_SNP [dm6]	C	T	5.267e^-4	1	INTERGENIC
2L	2293315	2L_2293315_DEL [dm3] 2L_2293315_DEL [dm6]	TTCGAGGACCTCAGTGCCTG...	T	5.294e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	17797240	2L_17797240_SNP [dm3] 2L_17797240_SNP [dm6]	C	A	5.307e^-4	1	INTRON CadN2
2L	20337343	2L_20337343_SNP [dm3] 2L_20337343_SNP [dm6]	T	C	5.317e^-4	1	INTRON spir
3L	12478303	3L_12478303_SNP [dm3] 3L_12485203_SNP [dm6]	G	T	5.325e^-4	1	UPSTREAM CG33725 & 1 other INTRON CG33725	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10238238	2R_10238238_SNP [dm3] 2R_14350733_SNP [dm6]	T	A	5.326e^-4	1	SYNONYMOUS_CODING Shroom	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2867778	2L_2867778_SNP [dm3] 2L_2867778_SNP [dm6]	T	C	5.329e^-4	1	UTR_3_PRIME CG2991 DOWNSTREAM CG31694
2R	3611729	2R_3611729_SNP [dm3] 2R_7724224_SNP [dm6]	G	C	5.339e^-4	1	INTRON CG18812	TF binding site mE1_TFBS_inv
2R	16486855	2R_16486855_SNP [dm3] 2R_20599350_SNP [dm6]	A	T	5.339e^-4	1	INTRON bl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	18246052	2L_18246052_SNP [dm3] 2L_18246052_SNP [dm6]	A	T	5.343e^-4	1	UTR_5_PRIME CG42750
2L	8370131	2L_8370131_SNP [dm3] 2L_8370131_SNP [dm6]	T	A	5.344e^-4	1	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	8370138	2L_8370138_SNP [dm3] 2L_8370138_SNP [dm6]	C	G	5.344e^-4	1	UPSTREAM CG17292 DOWNSTREAM CR45341 & 1 other INTERGENIC
2L	2504775	2L_2504775_SNP [dm3] 2L_2504775_SNP [dm6]	T	A	5.345e^-4	1	INTERGENIC
3L	4530627	3L_4530627_SNP [dm3] 3L_4530627_SNP [dm6]	G	C	5.346e^-4	1	INTRON Tie	TF binding site mE1_TFBS_inv
2R	6290852	2R_6290852_SNP [dm3] 2R_10403347_SNP [dm6]	C	T	5.348e^-4	1	INTRON CG42732
3R	14239354	3R_14239354_DEL [dm3] 3R_18413632_DEL [dm6]	TTT	T	5.372e^-4	1	UPSTREAM CG31122 DOWNSTREAM fru INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	2505186	2L_2505186_SNP [dm3] 2L_2505186_SNP [dm6]	A	G	5.377e^-4	1	INTERGENIC
3L	17503056	3L_17503056_SNP [dm3] 3L_17509956_SNP [dm6]	G	A	5.386e^-4	1	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	1934540	3R_1934540_SNP [dm3] 3R_6108818_SNP [dm6]	C	G	5.388e^-4	1	DOWNSTREAM Obp83ef INTRON Obp83cd
3L	7827805	3L_7827805_SNP [dm3] 3L_7834705_SNP [dm6]	T	A	5.388e^-4	1	INTRON Pdp1
3L	10786855	3L_10786855_SNP [dm3] 3L_10793755_SNP [dm6]	A	G	5.392e^-4	1	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	13573518	3L_13573518_SNP [dm3] 3L_13580418_SNP [dm6]	A	T	5.393e^-4	1	INTRON bru-3
X	11195041	X_11195041_SNP [dm3] X_11301008_SNP [dm6]	A	C	5.398e^-4	1	INTRON CG44422
2L	11192334	2L_11192334_SNP [dm3] 2L_11192334_SNP [dm6]	T	A	5.413e^-4	1	INTRON Ca-beta
3R	16817578	3R_16817578_SNP [dm3] 3R_20991856_SNP [dm6]	A	T	5.425e^-4	1	INTRON Calx
3R	14287646	3R_14287646_INS [dm3] 3R_18461924_INS [dm6]	C	TA	5.449e^-4	1	INTRON fru
3L	7392890	3L_7392890_SNP [dm3] 3L_7399790_SNP [dm6]	C	T	5.453e^-4	1	UTR_3_PRIME CG8562 UPSTREAM CG18417
X	16892063	X_16892063_SNP [dm3] X_16998030_SNP [dm6]	A	C	5.458e^-4	1	INTRON CG45002
3L	7290467	3L_7290467_SNP [dm3] 3L_7297367_SNP [dm6]	A	G	5.462e^-4	1	INTRON unc-13-4A
3R	8437084	3R_8437084_SNP [dm3] 3R_12611362_SNP [dm6]	T	A	5.484e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	11417869	2R_11417869_SNP [dm3] 2R_15530364_SNP [dm6]	T	A	5.492e^-4	1	INTRON Khc-73	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15173901	X_15173901_SNP [dm3] X_15279868_SNP [dm6]	G	A	5.495e^-4	1	INTERGENIC
2R	4803460	2R_4803460_SNP [dm3] 2R_8915955_SNP [dm6]	T	G	5.499e^-4	1	SYNONYMOUS_CODING lin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	10712124	3L_10712124_INS [dm3] 3L_10719024_INS [dm6]	C	CC	5.504e^-4	1	INTERGENIC
2L	14250306	2L_14250306_SNP [dm3] 2L_14250306_SNP [dm6]	C	A	5.507e^-4	1	INTERGENIC
2L	13054983	2L_13054983_DEL [dm3] 2L_13054983_DEL [dm6]	GCAAAAAGGGG...	G	5.523e^-4	1	INTRON CG9932
2R	13510772	2R_13510772_SNP [dm3] 2R_17623267_SNP [dm6]	C	A	5.525e^-4	1	INTRON CG10936
X	18452799	X_18452799_SNP [dm3] X_18558766_SNP [dm6]	G	T	5.525e^-4	1	INTRON Bx
X	18452805	X_18452805_INS [dm3] X_18558772_INS [dm6]	C	CC	5.525e^-4	1	INTRON Bx
3R	1504752	3R_1504752_SNP [dm3] 3R_5679030_SNP [dm6]	G	A	5.533e^-4	1	UTR_3_PRIME Atg17	TF binding site mE1_TFBS_cad
2L	20318741	2L_20318741_SNP [dm3] 2L_20318741_SNP [dm6]	C	A	5.539e^-4	1	INTRON spir
3L	10415866	3L_10415866_SNP [dm3] 3L_10422766_SNP [dm6]	A	G	5.540e^-4	1	INTERGENIC
3R	6310218	3R_6310218_SNP [dm3] 3R_10484496_SNP [dm6]	T	A	5.545e^-4	1	INTERGENIC	TF binding site mE1_TFBS_cad
2L	12724112	2L_12724112_SNP [dm3] 2L_12724112_SNP [dm6]	T	C	5.549e^-4	1	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	12724133	2L_12724133_SNP [dm3] 2L_12724133_SNP [dm6]	T	C	5.549e^-4	1	INTRON MRP	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7396853	3L_7396853_SNP [dm3] 3L_7403753_SNP [dm6]	C	T	5.559e^-4	1	INTRON CG8560
3R	14234874	3R_14234874_SNP [dm3] 3R_18409152_SNP [dm6]	A	G	5.563e^-4	1	SYNONYMOUS_CODING CG31122 DOWNSTREAM CG10864
X	608490	X_608490_SNP [dm3] X_714457_SNP [dm6]	G	C	5.565e^-4	1	INTRON sdk
3L	16725044	3L_16725044_SNP [dm3] 3L_16731944_SNP [dm6]	C	T	5.566e^-4	1	INTERGENIC
2L	21738297	2L_21738297_SNP [dm3] 2L_21738297_SNP [dm6]	A	G	5.576e^-4	1	INTERGENIC	transposable element FlyBase
3R	15249883	3R_15249883_SNP [dm3] 3R_19424161_SNP [dm6]	C	T	5.586e^-4	1	SYNONYMOUS_CODING CG3517 INTRON CG31221	TF binding site mE1_TFBS_cad
2L	4355517	2L_4355517_SNP [dm3] 2L_4355517_SNP [dm6]	T	A	5.588e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12511729	2L_12511729_SNP [dm3] 2L_12511729_SNP [dm6]	A	C	5.592e^-4	1	INTRON bun
X	5325619	X_5325619_SNP [dm3] X_5431586_SNP [dm6]	G	C	5.594e^-4	1	NON_SYNONYMOUS_CODING CG15784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
X	19549624	X_19549624_SNP [dm3] X_19655591_SNP [dm6]	G	A	5.599e^-4	1	SYNONYMOUS_CODING CG14215	TF binding site mE1_TFBS_chinmo
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	5.599e^-4	1	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2L	16168471	2L_16168471_SNP [dm3] 2L_16168471_SNP [dm6]	T	C	5.608e^-4	1	SPLICE_SITE_REGION Ca-alpha1D START_GAINED Ca-alpha1D UTR_5_PRIME Ca-alpha1D INTRON Ca-alpha1D
2L	16168730	2L_16168730_SNP [dm3] 2L_16168730_SNP [dm6]	T	A	5.608e^-4	1	INTRON Ca-alpha1D
2L	16168731	2L_16168731_SNP [dm3] 2L_16168731_SNP [dm6]	G	T	5.608e^-4	1	INTRON Ca-alpha1D
2L	12895752	2L_12895752_SNP [dm3] 2L_12895752_SNP [dm6]	C	T	5.611e^-4	1	INTERGENIC
2L	9534292	2L_9534292_SNP [dm3] 2L_9534292_SNP [dm6]	T	C	5.617e^-4	1	UPSTREAM Oatp30B INTRON Oatp30B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8617860	X_8617860_SNP [dm3] X_8723827_SNP [dm6]	A	C	5.623e^-4	1	UPSTREAM CR43297 INTERGENIC
3L	6818083	3L_6818083_SNP [dm3] 3L_6824983_SNP [dm6]	A	G	5.625e^-4	1	INTERGENIC
X	22182797	X_22182797_SNP [dm3] X_22780961_SNP [dm6]	C	A	5.631e^-4	1	INTRON CR44997
X	3338431	X_3338431_SNP [dm3] X_3444398_SNP [dm6]	A	G	5.648e^-4	1	INTRON CR44999 & 1 other
X	5731481	X_5731481_SNP [dm3] X_5837448_SNP [dm6]	G	A	5.656e^-4	1	SYNONYMOUS_CODING CG15765	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7394623	3L_7394623_SNP [dm3] 3L_7401523_SNP [dm6]	G	C	5.669e^-4	1	UTR_3_PRIME CG18417 DOWNSTREAM CG8560
3L	21593398	3L_21593398_SNP [dm3] 3L_21600298_SNP [dm6]	C	G	5.672e^-4	1	INTRON TfAP-2
2L	1135505	2L_1135505_INS [dm3] 2L_1135505_INS [dm6]	C	TTCTTACTTATAACGGTTGC...	5.673e^-4	1	INTRON CG4577	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5884889	2R_5884889_SNP [dm3] 2R_9997384_SNP [dm6]	G	A	5.680e^-4	1	UTR_3_PRIME Pka-R2 INTRON Pka-R2
2R	6850873	2R_6850873_SNP [dm3] 2R_10963368_SNP [dm6]	C	T	5.688e^-4	1	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

pc_Acetobacteraceae phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results