DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=9.704e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_K	0.034698

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_K	4.8337	0.0279
In_3R_Mo	4.9747	0.0831

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1476 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	12172163	2R_12172163_SNP [dm3] 2R_16284658_SNP [dm6]	G	T	3.530e^-6	0.991	SPLICE_SITE_REGION CG9068 INTRON CG9068	TF binding site mE1_TFBS_sens
2L	2087424	2L_2087424_SNP [dm3] 2L_2087424_SNP [dm6]	T	A	7.946e^-6	0.991	INTRON dpr3
2R	12172087	2R_12172087_SNP [dm3] 2R_16284582_SNP [dm6]	G	A	9.364e^-6	0.991	SYNONYMOUS_CODING CG9068
2R	10666304	2R_10666304_SNP [dm3] 2R_14778799_SNP [dm6]	G	A	1.197e^-5	0.991	INTRON kn	regulatory region REDfly_CRMs
3R	9536594	3R_9536594_SNP [dm3] 3R_13710872_SNP [dm6]	T	G	1.365e^-5	0.991	UTR_5_PRIME primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536596	3R_9536596_SNP [dm3] 3R_13710874_SNP [dm6]	T	C	1.365e^-5	0.991	UTR_5_PRIME primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536605	3R_9536605_DEL [dm3] 3R_13710883_DEL [dm6]	GTTC	G	1.365e^-5	0.991	UTR_5_PRIME primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	1629112	3L_1629112_SNP [dm3] 3L_1629112_SNP [dm6]	G	C	1.489e^-5	0.991	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	6859900	2R_6859900_SNP [dm3] 2R_10972395_SNP [dm6]	T	C	1.701e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14820705	2L_14820705_SNP [dm3] 2L_14820705_SNP [dm6]	C	G	1.806e^-5	0.991	INTERGENIC
2L	14820713	2L_14820713_SNP [dm3] 2L_14820713_SNP [dm6]	T	C	1.806e^-5	0.991	INTERGENIC
2L	14820715	2L_14820715_SNP [dm3] 2L_14820715_SNP [dm6]	C	G	1.806e^-5	0.991	INTERGENIC
2L	14820719	2L_14820719_SNP [dm3] 2L_14820719_SNP [dm6]	A	C	1.806e^-5	0.991	INTERGENIC
2L	14820725	2L_14820725_SNP [dm3] 2L_14820725_SNP [dm6]	T	A	1.806e^-5	0.991	INTERGENIC
3L	9732926	3L_9732926_SNP [dm3] 3L_9739826_SNP [dm6]	T	A	1.929e^-5	0.991	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3L	9732927	3L_9732927_SNP [dm3] 3L_9739827_SNP [dm6]	T	G	1.929e^-5	0.991	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
2L	21869702	2L_21869702_SNP [dm3] 2L_21869702_SNP [dm6]	A	G	2.052e^-5	0.991	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21869710	2L_21869710_SNP [dm3] 2L_21869710_SNP [dm6]	G	A	2.052e^-5	0.991	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13101279	3L_13101279_SNP [dm3] 3L_13108179_SNP [dm6]	A	T	2.075e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3L	3876511	3L_3876511_SNP [dm3] 3L_3876511_SNP [dm6]	A	C	2.421e^-5	0.991	INTERGENIC
3R	7113087	3R_7113087_SNP [dm3] 3R_11287365_SNP [dm6]	T	A	2.457e^-5	0.991	EXON CR31386
3L	15112978	3L_15112978_SNP [dm3] 3L_15119878_SNP [dm6]	C	A	2.487e^-5	0.991	UTR_3_PRIME CG16959 INTRON Cep135
2R	6859903	2R_6859903_SNP [dm3] 2R_10972398_SNP [dm6]	A	T	2.522e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
X	15727038	X_15727038_SNP [dm3] X_15833005_SNP [dm6]	A	G	2.558e^-5	0.991	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	706375	2L_706375_SNP [dm3] 2L_706375_SNP [dm6]	C	T	2.564e^-5	0.991	SYNONYMOUS_CODING ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	22679161	3R_22679161_SNP [dm3] 3R_26853439_SNP [dm6]	C	T	2.797e^-5	0.991	INTRON Lerp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2087422	2L_2087422_SNP [dm3] 2L_2087422_SNP [dm6]	A	T	2.996e^-5	0.991	INTRON dpr3
2L	14820727	2L_14820727_SNP [dm3] 2L_14820727_SNP [dm6]	C	T	3.020e^-5	0.991	INTERGENIC
2L	14820750	2L_14820750_SNP [dm3] 2L_14820750_SNP [dm6]	G	T	3.023e^-5	0.991	INTERGENIC
3L	9174011	3L_9174011_SNP [dm3] 3L_9180911_SNP [dm6]	G	T	3.061e^-5	0.991	INTRON Rdl
2L	13874993	2L_13874993_SNP [dm3] 2L_13874993_SNP [dm6]	T	G	3.188e^-5	0.991	INTRON CenG1A
2L	2510137	2L_2510137_SNP [dm3] 2L_2510137_SNP [dm6]	C	T	3.392e^-5	0.991	INTERGENIC
2R	13688294	2R_13688294_SNP [dm3] 2R_17800789_SNP [dm6]	T	A	3.393e^-5	0.991	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13688308	2R_13688308_SNP [dm3] 2R_17800803_SNP [dm6]	C	A	3.393e^-5	0.991	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	2087403	2L_2087403_SNP [dm3] 2L_2087403_SNP [dm6]	A	T	3.396e^-5	0.991	INTRON dpr3
2R	9427830	2R_9427830_SNP [dm3] 2R_13540325_SNP [dm6]	G	T	3.473e^-5	0.991	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
3L	9174015	3L_9174015_SNP [dm3] 3L_9180915_SNP [dm6]	A	T	3.580e^-5	0.991	INTRON Rdl
3L	8637879	3L_8637879_SNP [dm3] 3L_8644779_SNP [dm6]	C	G	3.878e^-5	0.991	DOWNSTREAM CG13305 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	13497643	2R_13497643_SNP [dm3] 2R_17610138_SNP [dm6]	C	T	3.889e^-5	0.991	INTRON CG10936
2L	10967200	2L_10967200_SNP [dm3] 2L_10967200_SNP [dm6]	G	C	4.061e^-5	0.991	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	18431724	X_18431724_SNP [dm3] X_18537691_SNP [dm6]	G	A	4.099e^-5	0.991	INTRON Bx
2L	21869704	2L_21869704_SNP [dm3] 2L_21869704_SNP [dm6]	A	C	4.307e^-5	0.991	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12824466	X_12824466_SNP [dm3] X_12930433_SNP [dm6]	A	G	4.357e^-5	0.991	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11327471	2L_11327471_SNP [dm3] 2L_11327471_SNP [dm6]	C	T	4.496e^-5	0.991	INTERGENIC
3L	7981437	3L_7981437_SNP [dm3] 3L_7988337_SNP [dm6]	T	A	4.549e^-5	0.991	INTRON nmo	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13066883	3L_13066883_SNP [dm3] 3L_13073783_SNP [dm6]	C	T	4.582e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12313598	3L_12313598_SNP [dm3] 3L_12320498_SNP [dm6]	G	A	4.654e^-5	0.991	INTERGENIC
2L	14820708	2L_14820708_SNP [dm3] 2L_14820708_SNP [dm6]	T	A	4.684e^-5	0.991	INTERGENIC
2L	13987314	2L_13987314_SNP [dm3] 2L_13987314_SNP [dm6]	T	C	4.885e^-5	0.991	INTRON rk
3L	7420860	3L_7420860_SNP [dm3] 3L_7427760_SNP [dm6]	G	A	4.885e^-5	0.991	INTRON CG42458
2L	21869688	2L_21869688_SNP [dm3] 2L_21869688_SNP [dm6]	C	T	4.977e^-5	0.991	DOWNSTREAM CR44920 EXON CR44917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	15727078	X_15727078_SNP [dm3] X_15833045_SNP [dm6]	G	A	5.012e^-5	0.991	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	18431639	X_18431639_SNP [dm3] X_18537606_SNP [dm6]	C	T	5.101e^-5	0.991	INTRON Bx
X	18431697	X_18431697_SNP [dm3] X_18537664_SNP [dm6]	A	T	5.123e^-5	0.991	INTRON Bx
2L	2087437	2L_2087437_SNP [dm3] 2L_2087437_SNP [dm6]	G	A	5.189e^-5	0.991	INTRON dpr3
2L	2087373	2L_2087373_SNP [dm3] 2L_2087373_SNP [dm6]	A	G	5.233e^-5	0.991	INTRON dpr3
2L	15865753	2L_15865753_SNP [dm3] 2L_15865753_SNP [dm6]	T	A	5.286e^-5	0.991	UPSTREAM CG42792 INTERGENIC
3R	7113085	3R_7113085_SNP [dm3] 3R_11287363_SNP [dm6]	T	A	5.301e^-5	0.991	EXON CR31386
3L	15109465	3L_15109465_SNP [dm3] 3L_15116365_SNP [dm6]	G	A	5.356e^-5	0.991	UTR_3_PRIME CG13458 UPSTREAM Cep135	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	10085133	X_10085133_SNP [dm3] X_10191100_SNP [dm6]	G	C	5.465e^-5	0.991	NON_SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	16660789	3L_16660789_SNP [dm3] 3L_16667689_SNP [dm6]	A	T	5.482e^-5	0.991	UTR_5_PRIME Galphaf	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	6005925	X_6005925_SNP [dm3] X_6111892_SNP [dm6]	T	A	5.616e^-5	0.991	INTRON Ca-alpha1T	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17125028	2R_17125028_SNP [dm3] 2R_21237523_SNP [dm6]	T	G	5.942e^-5	0.991	INTRON ASPP
2L	20558100	2L_20558100_SNP [dm3] 2L_20558100_SNP [dm6]	A	T	5.953e^-5	0.991	INTERGENIC
2R	9630469	2R_9630469_SNP [dm3] 2R_13742964_SNP [dm6]	G	T	6.138e^-5	0.991	INTRON fas
3R	7461708	3R_7461708_SNP [dm3] 3R_11635986_SNP [dm6]	G	T	6.179e^-5	0.991	INTRON Csk	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	10018329	3L_10018329_SNP [dm3] 3L_10025229_SNP [dm6]	G	C	6.187e^-5	0.991	INTRON dpr6
2L	5487017	2L_5487017_DEL [dm3] 2L_5487017_DEL [dm6]	ATG	C	6.385e^-5	0.991	EXON CR45287
2L	5487022	2L_5487022_SNP [dm3] 2L_5487022_SNP [dm6]	G	T	6.385e^-5	0.991	EXON CR45287
2L	3081780	2L_3081780_SNP [dm3] 2L_3081780_SNP [dm6]	T	C	6.468e^-5	0.991	INTRON toc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	20591036	3L_20591036_SNP [dm3] 3L_20597936_SNP [dm6]	G	T	6.766e^-5	0.991	UTR_3_PRIME knrl
3L	18311535	3L_18311535_SNP [dm3] 3L_18318435_SNP [dm6]	A	T	6.865e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11132873	3L_11132873_SNP [dm3] 3L_11139773_SNP [dm6]	G	C	6.993e^-5	0.991	INTRON CG32082
2R	12172171	2R_12172171_SNP [dm3] 2R_16284666_SNP [dm6]	T	A	7.036e^-5	0.991	INTRON CG9068	TF binding site mE1_TFBS_sens
2L	6933655	2L_6933655_SNP [dm3] 2L_6933655_SNP [dm6]	C	G	7.147e^-5	0.991	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9732929	3L_9732929_INS [dm3] 3L_9739829_INS [dm6]	A	AAACTTCTAACACTT...	7.147e^-5	0.991	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
2R	8823035	2R_8823035_SNP [dm3] 2R_12935530_SNP [dm6]	G	T	7.578e^-5	0.991	INTRON CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12020064	3L_12020064_SNP [dm3] 3L_12026964_SNP [dm6]	G	C	7.610e^-5	0.991	UPSTREAM CR43994 INTRON rols
2R	14152597	2R_14152597_SNP [dm3] 2R_18265092_SNP [dm6]	T	A	7.755e^-5	0.991	INTERGENIC
2L	10044419	2L_10044419_INS [dm3] 2L_10044419_INS [dm6]	C	CAGCGGAAAAAA...	7.968e^-5	0.991	INTERGENIC
2L	14823391	2L_14823391_SNP [dm3] 2L_14823391_SNP [dm6]	A	T	7.987e^-5	0.991	INTERGENIC
3L	16822690	3L_16822690_SNP [dm3] 3L_16829590_SNP [dm6]	T	C	8.110e^-5	0.991	UPSTREAM CG13024 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9192021	2L_9192021_SNP [dm3] 2L_9192021_SNP [dm6]	T	A	8.351e^-5	0.991	INTRON tai
3L	5186875	3L_5186875_SNP [dm3] 3L_5193775_SNP [dm6]	T	A	8.363e^-5	0.991	INTRON shep
3L	4529033	3L_4529033_SNP [dm3] 3L_4529033_SNP [dm6]	C	G	8.658e^-5	0.991	INTRON Tie
3L	9732935	3L_9732935_SNP [dm3] 3L_9739835_SNP [dm6]	A	G	8.741e^-5	0.991	UPSTREAM CG42268 INTRON CG42268	TF binding site mE1_TFBS_cad
3R	11106790	3R_11106790_SNP [dm3] 3R_15281068_SNP [dm6]	G	T	8.778e^-5	0.991	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	16932491	X_16932491_SNP [dm3] X_17038458_SNP [dm6]	C	T	8.937e^-5	0.991	INTRON CG45002
X	10085137	X_10085137_SNP [dm3] X_10191104_SNP [dm6]	G	A	9.029e^-5	0.991	SYNONYMOUS_CODING CG43902 INTRON CR44894
3L	7420876	3L_7420876_SNP [dm3] 3L_7427776_SNP [dm6]	A	G	9.071e^-5	0.991	INTRON CG42458
3L	18311546	3L_18311546_SNP [dm3] 3L_18318446_SNP [dm6]	C	T	9.084e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2087442	2L_2087442_SNP [dm3] 2L_2087442_SNP [dm6]	T	G	9.085e^-5	0.991	INTRON dpr3
2L	2387973	2L_2387973_SNP [dm3] 2L_2387973_SNP [dm6]	A	G	9.541e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	1631148	3L_1631148_SNP [dm3] 3L_1631148_SNP [dm6]	C	T	9.596e^-5	0.991	UTR_3_PRIME nSyb DOWNSTREAM nSyb
X	16776036	X_16776036_SNP [dm3] X_16882003_SNP [dm6]	T	C	9.737e^-5	0.991	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	20951888	2L_20951888_SNP [dm3] 2L_20951888_SNP [dm6]	G	T	9.754e^-5	0.991	INTERGENIC
2L	20951898	2L_20951898_SNP [dm3] 2L_20951898_SNP [dm6]	A	C	9.754e^-5	0.991	INTERGENIC
X	16938971	X_16938971_SNP [dm3] X_17044938_SNP [dm6]	G	A	9.921e^-5	0.991	INTRON CG45002
3R	3142113	3R_3142113_SNP [dm3] 3R_7316391_SNP [dm6]	C	T	1.030e^-4	0.991	SYNONYMOUS_CODING CG10029
2R	12161954	2R_12161954_SNP [dm3] 2R_16274449_SNP [dm6]	A	G	1.042e^-4	0.991	NON_SYNONYMOUS_CODING CG33017
2L	13866659	2L_13866659_SNP [dm3] 2L_13866659_SNP [dm6]	G	T	1.044e^-4	0.991	INTRON CenG1A EXON CR44848	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2R	16666807	2R_16666807_SNP [dm3] 2R_20779302_SNP [dm6]	A	T	1.054e^-4	0.991	SYNONYMOUS_CODING CG43711 DOWNSTREAM CR44666
3R	27113729	3R_27113729_SNP [dm3] 3R_31288007_SNP [dm6]	C	T	1.079e^-4	0.991	INTERGENIC
3L	18400233	3L_18400233_SNP [dm3] 3L_18407133_SNP [dm6]	C	T	1.087e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
2L	15422264	2L_15422264_SNP [dm3] 2L_15422264_SNP [dm6]	T	C	1.090e^-4	0.991	INTERGENIC
2L	15422266	2L_15422266_DEL [dm3] 2L_15422266_DEL [dm6]	TCAAGTCTTAT...	T	1.090e^-4	0.991	INTERGENIC
X	4668175	X_4668175_SNP [dm3] X_4774142_SNP [dm6]	T	C	1.097e^-4	0.991	DOWNSTREAM CR45515 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14419090	2L_14419090_SNP [dm3] 2L_14419090_SNP [dm6]	C	T	1.105e^-4	0.991	INTERGENIC
3R	12921479	3R_12921479_SNP [dm3] 3R_17095757_SNP [dm6]	G	C	1.117e^-4	0.991	UPSTREAM cher INTRON cher
2R	4112038	2R_4112038_SNP [dm3] 2R_8224533_SNP [dm6]	C	T	1.129e^-4	0.991	SYNONYMOUS_CODING LRP1	TF binding site mE1_TFBS_sens
X	22050642	X_22050642_SNP [dm3] X_22648806_SNP [dm6]	A	C	1.148e^-4	0.991	INTERGENIC
3L	12313631	3L_12313631_SNP [dm3] 3L_12320531_SNP [dm6]	C	G	1.157e^-4	0.991	INTERGENIC
3R	15219921	3R_15219921_SNP [dm3] 3R_19394199_SNP [dm6]	C	T	1.160e^-4	0.991	SYNONYMOUS_CODING CG3739 INTRON Ino80	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10028813	2L_10028813_SNP [dm3] 2L_10028813_SNP [dm6]	A	T	1.163e^-4	0.991	SYNONYMOUS_CODING CG13127
2L	10044425	2L_10044425_SNP [dm3] 2L_10044425_SNP [dm6]	A	G	1.174e^-4	0.991	INTERGENIC
2L	10044428	2L_10044428_SNP [dm3] 2L_10044428_SNP [dm6]	A	G	1.174e^-4	0.991	INTERGENIC
2L	10044438	2L_10044438_SNP [dm3] 2L_10044438_SNP [dm6]	A	G	1.174e^-4	0.991	INTERGENIC
3R	15049450	3R_15049450_SNP [dm3] 3R_19223728_SNP [dm6]	C	G	1.177e^-4	0.991	INTRON vib
3R	14971395	3R_14971395_SNP [dm3] 3R_19145673_SNP [dm6]	C	A	1.213e^-4	0.991	SYNONYMOUS_CODING Ppcs
2L	13876135	2L_13876135_SNP [dm3] 2L_13876135_SNP [dm6]	C	T	1.226e^-4	0.991	INTRON CenG1A
X	15727189	X_15727189_SNP [dm3] X_15833156_SNP [dm6]	G	A	1.230e^-4	0.991	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad
3L	6307757	3L_6307757_SNP [dm3] 3L_6314657_SNP [dm6]	C	T	1.245e^-4	0.991	INTERGENIC
2L	3823282	2L_3823282_SNP [dm3] 2L_3823282_SNP [dm6]	T	G	1.246e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15730060	2R_15730060_SNP [dm3] 2R_19842555_SNP [dm6]	A	G	1.248e^-4	0.991	UTR_3_PRIME CG44569
2L	14821105	2L_14821105_SNP [dm3] 2L_14821105_SNP [dm6]	A	G	1.251e^-4	0.991	INTERGENIC
3L	10014330	3L_10014330_SNP [dm3] 3L_10021230_SNP [dm6]	A	T	1.279e^-4	0.991	INTRON dpr6
X	21329759	X_21329759_SNP [dm3] X_21458732_SNP [dm6]	T	A	1.292e^-4	0.991	UPSTREAM CG42343 INTERGENIC
3R	15370182	3R_15370182_SNP [dm3] 3R_19544460_SNP [dm6]	T	A	1.297e^-4	0.991	INTRON Dys
3L	7178831	3L_7178831_SNP [dm3] 3L_7185731_SNP [dm6]	C	T	1.303e^-4	0.991	INTRON Dscam2
2L	13311901	2L_13311901_SNP [dm3] 2L_13311901_SNP [dm6]	A	C	1.304e^-4	0.991	INTRON CG43778
2L	6804768	2L_6804768_SNP [dm3] 2L_6804768_SNP [dm6]	A	G	1.308e^-4	0.991	SYNONYMOUS_CODING CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	13874992	2L_13874992_SNP [dm3] 2L_13874992_SNP [dm6]	T	A	1.317e^-4	0.991	INTRON CenG1A
3L	2432886	3L_2432886_SNP [dm3] 3L_2432886_SNP [dm6]	T	G	1.321e^-4	0.991	INTRON CG45186
3L	10682866	3L_10682866_DEL [dm3] 3L_10689766_DEL [dm6]	AA	A	1.330e^-4	0.991	UTR_3_PRIME simj DOWNSTREAM simj
2L	5064075	2L_5064075_SNP [dm3] 2L_5064075_SNP [dm6]	T	A	1.334e^-4	0.991	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20555846	X_20555846_SNP [dm3] X_20684819_SNP [dm6]	C	T	1.337e^-4	0.991	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	11048217	3L_11048217_SNP [dm3] 3L_11055117_SNP [dm6]	C	A	1.359e^-4	0.991	UPSTREAM CG7888 INTRON CG7888
3R	9217807	3R_9217807_SNP [dm3] 3R_13392085_SNP [dm6]	A	T	1.370e^-4	0.991	INTRON CCHa2	TF binding site mE1_TFBS_inv
2L	1196219	2L_1196219_SNP [dm3] 2L_1196219_SNP [dm6]	T	C	1.390e^-4	0.991	SYNONYMOUS_CODING CG5001
3L	17901101	3L_17901101_SNP [dm3] 3L_17908001_SNP [dm6]	A	G	1.398e^-4	0.991	UPSTREAM CG14353 & 1 other INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_Ubx
3L	20591000	3L_20591000_SNP [dm3] 3L_20597900_SNP [dm6]	A	G	1.414e^-4	0.991	UTR_3_PRIME knrl
3L	4017231	3L_4017231_SNP [dm3] 3L_4017231_SNP [dm6]	T	A	1.417e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3L	10016443	3L_10016443_SNP [dm3] 3L_10023343_SNP [dm6]	G	T	1.433e^-4	0.991	INTRON dpr6
2R	9016006	2R_9016006_SNP [dm3] 2R_13128501_SNP [dm6]	C	T	1.466e^-4	0.991	SYNONYMOUS_CODING CG3955	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14820711	2L_14820711_INS [dm3] 2L_14820711_INS [dm6]	A	AGAA	1.469e^-4	0.991	INTERGENIC
2L	3981955	2L_3981955_SNP [dm3] 2L_3981955_SNP [dm6]	G	A	1.474e^-4	0.991	INTRON fred
3L	9556109	3L_9556109_SNP [dm3] 3L_9563009_SNP [dm6]	G	A	1.498e^-4	0.991	INTRON CG42673
X	15727087	X_15727087_SNP [dm3] X_15833054_SNP [dm6]	A	C	1.509e^-4	0.991	SYNONYMOUS_CODING Chc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	15422278	2L_15422278_SNP [dm3] 2L_15422278_SNP [dm6]	G	A	1.513e^-4	0.991	INTERGENIC
X	10086094	X_10086094_SNP [dm3] X_10192061_SNP [dm6]	A	G	1.529e^-4	0.991	SYNONYMOUS_CODING CG43902 INTRON CR44894
2R	9427629	2R_9427629_SNP [dm3] 2R_13540124_SNP [dm6]	T	A	1.546e^-4	0.991	UPSTREAM CG6145 INTRON CG6145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	1073058	3L_1073058_SNP [dm3] 3L_1073058_SNP [dm6]	G	A	1.552e^-4	0.991	INTRON bab1
2L	2387744	2L_2387744_SNP [dm3] 2L_2387744_SNP [dm6]	T	C	1.577e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10078932	2L_10078932_SNP [dm3] 2L_10078932_SNP [dm6]	G	A	1.590e^-4	0.991	INTRON CG44153
2L	2380743	2L_2380743_SNP [dm3] 2L_2380743_SNP [dm6]	G	T	1.592e^-4	0.991	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20210195	X_20210195_SNP [dm3] X_20339168_SNP [dm6]	A	C	1.596e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9630485	2R_9630485_SNP [dm3] 2R_13742980_SNP [dm6]	C	A	1.598e^-4	0.991	INTRON fas
2R	14966314	2R_14966314_SNP [dm3] 2R_19078809_SNP [dm6]	C	T	1.607e^-4	0.991	INTRON 5-HT1A
2R	7777931	2R_7777931_SNP [dm3] 2R_11890426_SNP [dm6]	T	C	1.619e^-4	0.991	UPSTREAM Ef1alpha48D INTRON ERp60	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	13241562	3L_13241562_SNP [dm3] 3L_13248462_SNP [dm6]	G	A	1.620e^-4	0.991	SYNONYMOUS_CODING CG32119 INTRON caps
3L	3563038	3L_3563038_SNP [dm3] 3L_3563038_SNP [dm6]	G	A	1.629e^-4	0.991	INTRON Eip63E
2L	11078244	2L_11078244_INS [dm3] 2L_11078244_INS [dm6]	A	ACTAATATGA	1.629e^-4	0.991	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2R	8620108	2R_8620108_SNP [dm3] 2R_12732603_SNP [dm6]	C	T	1.630e^-4	0.991	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18399136	3L_18399136_INS [dm3] 3L_18406036_INS [dm6]	A	TTT	1.673e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2610987	2L_2610987_SNP [dm3] 2L_2610987_SNP [dm6]	A	G	1.685e^-4	0.991	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	2383971	X_2383971_SNP [dm3] X_2489938_SNP [dm6]	G	A	1.686e^-4	0.991	SYNONYMOUS_CODING trol	TF binding site mE1_TFBS_chinmo
3R	3327291	3R_3327291_SNP [dm3] 3R_7501569_SNP [dm6]	T	C	1.687e^-4	0.991	SYNONYMOUS_CODING CG1287 INTRON alpha-Est9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8677320	3L_8677320_SNP [dm3] 3L_8684220_SNP [dm6]	T	G	1.690e^-4	0.991	INTERGENIC
X	16776042	X_16776042_SNP [dm3] X_16882009_SNP [dm6]	T	C	1.692e^-4	0.991	SYNONYMOUS_CODING CG4872 DOWNSTREAM CG9104	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	6859978	2R_6859978_SNP [dm3] 2R_10972473_SNP [dm6]	A	C	1.695e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2387757	2L_2387757_SNP [dm3] 2L_2387757_SNP [dm6]	A	C	1.706e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2087400	2L_2087400_SNP [dm3] 2L_2087400_SNP [dm6]	T	A	1.706e^-4	0.991	INTRON dpr3
X	16588732	X_16588732_SNP [dm3] X_16694699_SNP [dm6]	G	A	1.712e^-4	0.991	UTR_5_PRIME Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3872208	2R_3872208_SNP [dm3] 2R_7984703_SNP [dm6]	T	A	1.716e^-4	0.991	UPSTREAM ACC INTRON ACC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12362863	3L_12362863_SNP [dm3] 3L_12369763_SNP [dm6]	G	C	1.726e^-4	0.991	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5169221	3L_5169221_INS [dm3] 3L_5176121_INS [dm6]	A	AGAA	1.733e^-4	0.991	INTRON shep
2R	9663359	2R_9663359_SNP [dm3] 2R_13775854_SNP [dm6]	C	T	1.738e^-4	0.991	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9238331	X_9238331_SNP [dm3] X_9344298_SNP [dm6]	T	A	1.761e^-4	0.991	INTRON CG34449
X	14429016	X_14429016_SNP [dm3] X_14534983_SNP [dm6]	T	C	1.787e^-4	0.991	INTERGENIC
3L	18399246	3L_18399246_SNP [dm3] 3L_18406146_SNP [dm6]	T	G	1.797e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9132125	3L_9132125_SNP [dm3] 3L_9139025_SNP [dm6]	C	G	1.808e^-4	0.991	INTRON nwk
2L	3786951	2L_3786951_SNP [dm3] 2L_3786951_SNP [dm6]	G	A	1.816e^-4	0.991	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
X	14725414	X_14725414_SNP [dm3] X_14831381_SNP [dm6]	A	G	1.822e^-4	0.991	SYNONYMOUS_CODING CG14408 START_GAINED CG14408 UTR_5_PRIME CG14408	TF binding site mE1_TFBS_cad
2R	13786634	2R_13786634_SNP [dm3] 2R_17899129_SNP [dm6]	C	T	1.827e^-4	0.991	INTRON Elk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5426345	3L_5426345_SNP [dm3] 3L_5433245_SNP [dm6]	G	A	1.829e^-4	0.991	INTRON CG34391
3L	7420974	3L_7420974_SNP [dm3] 3L_7427874_SNP [dm6]	C	T	1.851e^-4	0.991	INTRON CG42458
2R	16221928	2R_16221928_DEL [dm3] 2R_20334423_DEL [dm6]	TATT	T	1.855e^-4	0.991	INTERGENIC
3R	3327108	3R_3327108_SNP [dm3] 3R_7501386_SNP [dm6]	C	T	1.856e^-4	0.991	SYNONYMOUS_CODING CG1287 INTRON alpha-Est9	TF binding site mE1_TFBS_cad
2L	8896412	2L_8896412_SNP [dm3] 2L_8896412_SNP [dm6]	T	A	1.881e^-4	0.991	INTERGENIC
2L	2858803	2L_2858803_SNP [dm3] 2L_2858803_SNP [dm6]	C	T	1.890e^-4	0.991	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15112242	3L_15112242_SNP [dm3] 3L_15119142_SNP [dm6]	T	C	1.893e^-4	0.991	SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	13688296	2R_13688296_SNP [dm3] 2R_17800791_SNP [dm6]	A	G	1.932e^-4	0.991	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8664393	X_8664393_INS [dm3] X_8770360_INS [dm6]	T	TTTGAATGCT	1.938e^-4	0.991	INTRON Lim1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3382458	2L_3382458_SNP [dm3] 2L_3382458_SNP [dm6]	C	A	1.942e^-4	0.991	INTERGENIC
X	19977259	X_19977259_SNP [dm3] X_20083226_SNP [dm6]	A	G	1.945e^-4	0.991	INTERGENIC
2L	13979575	2L_13979575_SNP [dm3] 2L_13979575_SNP [dm6]	T	G	1.957e^-4	0.991	UPSTREAM NimC2 DOWNSTREAM Cyp28a5 INTERGENIC
3L	9735268	3L_9735268_SNP [dm3] 3L_9742168_SNP [dm6]	G	A	1.973e^-4	0.991	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12969633	X_12969633_SNP [dm3] X_13075600_SNP [dm6]	C	T	1.977e^-4	0.991	SYNONYMOUS_CODING rad
2L	7873174	2L_7873174_DEL [dm3] 2L_7873174_DEL [dm6]	ATTATTACCAATTATTACCA...	T	1.978e^-4	0.991	UPSTREAM CR45364 DOWNSTREAM spz3 & 1 other INTERGENIC
2L	10671968	2L_10671968_SNP [dm3] 2L_10671968_SNP [dm6]	A	G	1.979e^-4	0.991	DOWNSTREAM CG31871 INTERGENIC
3L	19921956	3L_19921956_SNP [dm3] 3L_19928856_SNP [dm6]	C	T	1.982e^-4	0.991	UTR_5_PRIME RhoGDI UPSTREAM CG8004 INTRON RhoGDI	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13956238	X_13956238_SNP [dm3] X_14062205_SNP [dm6]	C	T	1.987e^-4	0.991	UPSTREAM Ste:CG33236 INTERGENIC
X	16754996	X_16754996_SNP [dm3] X_16860963_SNP [dm6]	T	C	2.005e^-4	0.991	INTRON CG13003
3L	5484418	3L_5484418_SNP [dm3] 3L_5491318_SNP [dm6]	C	T	2.011e^-4	0.991	INTERGENIC
3L	9577924	3L_9577924_SNP [dm3] 3L_9584824_SNP [dm6]	T	C	2.027e^-4	0.991	INTRON CG42673
3L	5021092	3L_5021092_SNP [dm3] 3L_5021092_SNP [dm6]	G	A	2.028e^-4	0.991	INTRON Con
2R	7775487	2R_7775487_SNP [dm3] 2R_11887982_SNP [dm6]	C	A	2.036e^-4	0.991	SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff
2L	11078264	2L_11078264_SNP [dm3] 2L_11078264_SNP [dm6]	T	A	2.038e^-4	0.991	INTRON AstC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA
2L	11775424	2L_11775424_SNP [dm3] 2L_11775424_SNP [dm6]	T	G	2.041e^-4	0.991	INTERGENIC
2L	6933694	2L_6933694_SNP [dm3] 2L_6933694_SNP [dm6]	G	A	2.047e^-4	0.991	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6973733	X_6973733_SNP [dm3] X_7079700_SNP [dm6]	C	T	2.048e^-4	0.991	INTRON Sxl
X	16047934	X_16047934_SNP [dm3] X_16153901_SNP [dm6]	G	C	2.070e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
X	9229767	X_9229767_SNP [dm3] X_9335734_SNP [dm6]	G	A	2.071e^-4	0.991	INTRON CG34449
X	6523848	X_6523848_DEL [dm3] X_6629815_DEL [dm6]	TTTG	A	2.083e^-4	0.991	INTRON pigs
2R	7428463	2R_7428463_SNP [dm3] 2R_11540958_SNP [dm6]	T	G	2.090e^-4	0.991	INTERGENIC
3L	2339850	3L_2339850_SNP [dm3] 3L_2339850_SNP [dm6]	A	T	2.093e^-4	0.991	INTRON MsR1
X	14904027	X_14904027_SNP [dm3] X_15009994_SNP [dm6]	A	T	2.095e^-4	0.991	DOWNSTREAM hiw & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13882185	2L_13882185_SNP [dm3] 2L_13882185_SNP [dm6]	C	T	2.096e^-4	0.991	INTRON CenG1A
2R	10628933	2R_10628933_SNP [dm3] 2R_14741428_SNP [dm6]	T	G	2.098e^-4	0.991	INTRON CG12858	TF binding site mE1_TFBS_cad
X	13956224	X_13956224_SNP [dm3] X_14062191_SNP [dm6]	C	T	2.106e^-4	0.991	UPSTREAM Ste:CG33236 INTERGENIC
2L	15862710	2L_15862710_SNP [dm3] 2L_15862710_SNP [dm6]	A	G	2.109e^-4	0.991	UPSTREAM CR42791 INTERGENIC
3L	18398373	3L_18398373_SNP [dm3] 3L_18405273_SNP [dm6]	A	T	2.109e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
2L	3786894	2L_3786894_SNP [dm3] 2L_3786894_SNP [dm6]	C	T	2.115e^-4	0.991	UPSTREAM CG3921 DOWNSTREAM CG31958 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7775793	2R_7775793_SNP [dm3] 2R_11888288_SNP [dm6]	G	A	2.137e^-4	0.991	SYNONYMOUS_CODING ERp60 DOWNSTREAM cuff	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	4419630	3R_4419630_SNP [dm3] 3R_8593908_SNP [dm6]	G	A	2.147e^-4	0.991	INTRON 5-HT2B
3L	12019842	3L_12019842_SNP [dm3] 3L_12026742_SNP [dm6]	G	A	2.155e^-4	0.991	INTRON rols
3L	15263910	3L_15263910_SNP [dm3] 3L_15270810_SNP [dm6]	T	A	2.156e^-4	0.991	INTERGENIC
3R	12904447	3R_12904447_DEL [dm3] 3R_17078725_DEL [dm6]	ACCAAGCTCAAT...	G	2.158e^-4	0.991	UPSTREAM Keap1 INTRON Keap1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_Trl
2L	3438373	2L_3438373_SNP [dm3] 2L_3438373_SNP [dm6]	G	C	2.167e^-4	0.991	INTERGENIC
2L	7478962	2L_7478962_SNP [dm3] 2L_7478962_SNP [dm6]	T	A	2.171e^-4	0.991	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
3L	7420889	3L_7420889_SNP [dm3] 3L_7427789_SNP [dm6]	A	T	2.181e^-4	0.991	INTRON CG42458
X	6524123	X_6524123_SNP [dm3] X_6630090_SNP [dm6]	A	C	2.184e^-4	0.991	INTRON pigs
3L	1623403	3L_1623403_SNP [dm3] 3L_1623403_SNP [dm6]	G	T	2.195e^-4	0.991	UTR_3_PRIME ABCB7 & 1 other DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad
3L	1623424	3L_1623424_SNP [dm3] 3L_1623424_SNP [dm6]	A	T	2.195e^-4	0.991	UTR_3_PRIME GC DOWNSTREAM ABCB7	TF binding site mE1_TFBS_cad
3L	1627692	3L_1627692_SNP [dm3] 3L_1627692_SNP [dm6]	C	T	2.195e^-4	0.991	SYNONYMOUS_CODING CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11698389	2L_11698389_SNP [dm3] 2L_11698389_SNP [dm6]	A	G	2.207e^-4	0.991	INTERGENIC
3R	20383538	3R_20383538_SNP [dm3] 3R_24557816_SNP [dm6]	T	A	2.216e^-4	0.991	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ac
2L	1104754	2L_1104754_SNP [dm3] 2L_1104754_SNP [dm6]	A	C	2.229e^-4	0.991	SYNONYMOUS_CODING mtRNApol	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3344740	2L_3344740_SNP [dm3] 2L_3344740_SNP [dm6]	C	A	2.230e^-4	0.991	INTRON E23
X	5182282	X_5182282_SNP [dm3] X_5288249_SNP [dm6]	G	A	2.237e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15110954	3L_15110954_SNP [dm3] 3L_15117854_SNP [dm6]	T	C	2.239e^-4	0.991	INTRON Cep135	TF binding site mE1_TFBS_HSA
2R	15730059	2R_15730059_SNP [dm3] 2R_19842554_SNP [dm6]	C	T	2.256e^-4	0.991	UTR_3_PRIME CG44569
2R	14237170	2R_14237170_SNP [dm3] 2R_18349665_SNP [dm6]	A	G	2.257e^-4	0.991	INTRON sbb
3L	14098852	3L_14098852_SNP [dm3] 3L_14105752_SNP [dm6]	A	G	2.276e^-4	0.991	INTRON Sox21a	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	15112272	3L_15112272_SNP [dm3] 3L_15119172_SNP [dm6]	G	A	2.278e^-4	0.991	SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16822749	3L_16822749_SNP [dm3] 3L_16829649_SNP [dm6]	C	T	2.285e^-4	0.991	UPSTREAM CG13024 INTERGENIC
2R	9968175	2R_9968175_SNP [dm3] 2R_14080670_SNP [dm6]	T	C	2.288e^-4	0.991	INTRON Prosap
2L	14353170	2L_14353170_SNP [dm3] 2L_14353170_SNP [dm6]	C	T	2.289e^-4	0.991	NON_SYNONYMOUS_CODING l_2_34Fd DOWNSTREAM CG43052	TF binding site mE1_TFBS_cad
X	16710716	X_16710716_DEL [dm3] X_16816683_DEL [dm6]	AG	T	2.296e^-4	0.991	UPSTREAM CG4829 & 1 other INTRON CG4829
3L	2566056	3L_2566056_SNP [dm3] 3L_2566056_SNP [dm6]	G	C	2.312e^-4	0.991	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2566060	3L_2566060_SNP [dm3] 3L_2566060_SNP [dm6]	A	T	2.312e^-4	0.991	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22437988	3R_22437988_SNP [dm3] 3R_26612266_SNP [dm6]	T	C	2.314e^-4	0.991	INTERGENIC
X	12447611	X_12447611_SNP [dm3] X_12553578_SNP [dm6]	G	T	2.317e^-4	0.991	INTRON CG43921 & 1 other
3R	15049620	3R_15049620_SNP [dm3] 3R_19223898_SNP [dm6]	C	A	2.325e^-4	0.991	INTRON vib
3L	7705140	3L_7705140_SNP [dm3] 3L_7712040_SNP [dm6]	A	T	2.327e^-4	0.991	INTRON CG32373 & 1 other
2R	4558598	2R_4558598_SNP [dm3] 2R_8671093_SNP [dm6]	A	G	2.332e^-4	0.991	UPSTREAM Acsl INTRON Acsl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16092332	2R_16092332_SNP [dm3] 2R_20204827_SNP [dm6]	T	C	2.335e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	5263939	3L_5263939_SNP [dm3] 3L_5270839_SNP [dm6]	C	T	2.345e^-4	0.991	INTRON shep
3L	18400332	3L_18400332_SNP [dm3] 3L_18407232_SNP [dm6]	C	A	2.346e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
2R	12387808	2R_12387808_SNP [dm3] 2R_16500303_SNP [dm6]	T	C	2.347e^-4	0.991	UTR_5_PRIME Sema-2a UPSTREAM CG7813	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	4498753	2L_4498753_SNP [dm3] 2L_4498753_SNP [dm6]	T	A	2.348e^-4	0.991	SYNONYMOUS_CODING dp INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12910665	3R_12910665_SNP [dm3] 3R_17084943_SNP [dm6]	G	A	2.371e^-4	0.991	UPSTREAM GckIII DOWNSTREAM kuk INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	9238320	X_9238320_DEL [dm3] X_9344287_DEL [dm6]	AGAAAAA	A	2.374e^-4	0.991	INTRON CG34449
2L	1663307	2L_1663307_SNP [dm3] 2L_1663307_SNP [dm6]	G	T	2.383e^-4	0.991	INTRON chinmo	TF binding site BDTNP1_TFBS_dl
2R	19611307	2R_19611307_SNP [dm3] 2R_23723784_SNP [dm6]	G	T	2.400e^-4	0.991	INTRON Sesn
2R	14152524	2R_14152524_SNP [dm3] 2R_18265019_SNP [dm6]	A	G	2.401e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9735265	3L_9735265_SNP [dm3] 3L_9742165_SNP [dm6]	C	T	2.419e^-4	0.991	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	9961703	3R_9961703_SNP [dm3] 3R_14135981_SNP [dm6]	C	T	2.422e^-4	0.991	INTERGENIC
2R	13688361	2R_13688361_SNP [dm3] 2R_17800856_SNP [dm6]	C	A	2.422e^-4	0.991	UPSTREAM grh DOWNSTREAM Dhit EXON CR45270	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
X	13937574	X_13937574_SNP [dm3] X_14043541_SNP [dm6]	T	C	2.428e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10017389	3L_10017389_SNP [dm3] 3L_10024289_SNP [dm6]	C	A	2.433e^-4	0.991	INTRON dpr6
3L	10017554	3L_10017554_SNP [dm3] 3L_10024454_SNP [dm6]	G	T	2.433e^-4	0.991	INTRON dpr6
3L	3859875	3L_3859875_SNP [dm3] 3L_3859875_SNP [dm6]	G	A	2.435e^-4	0.991	INTRON Awh	TF binding site mE1_TFBS_cad
3L	2563845	3L_2563845_SNP [dm3] 3L_2563845_SNP [dm6]	A	G	2.447e^-4	0.991	SYNONYMOUS_CODING msn
3R	7632205	3R_7632205_SNP [dm3] 3R_11806483_SNP [dm6]	C	T	2.452e^-4	0.991	UTR_5_PRIME ClC-a INTRON ClC-a	TF binding site mE1_TFBS_HSA
X	15171538	X_15171538_SNP [dm3] X_15277505_SNP [dm6]	G	A	2.455e^-4	0.991	INTERGENIC
X	13433660	X_13433660_SNP [dm3] X_13539627_SNP [dm6]	G	T	2.467e^-4	0.991	INTERGENIC
3R	16003575	3R_16003575_SNP [dm3] 3R_20177853_SNP [dm6]	A	C	2.475e^-4	0.991	INTERGENIC
X	15322001	X_15322001_SNP [dm3] X_15427968_SNP [dm6]	G	C	2.480e^-4	0.991	INTRON Cngl
X	10458979	X_10458979_SNP [dm3] X_10564946_SNP [dm6]	A	T	2.484e^-4	0.991	DOWNSTREAM CG15296 INTRON spri
2L	4184917	2L_4184917_SNP [dm3] 2L_4184917_SNP [dm6]	A	G	2.490e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2L	4184931	2L_4184931_SNP [dm3] 2L_4184931_SNP [dm6]	A	C	2.490e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2R	17125023	2R_17125023_SNP [dm3] 2R_21237518_SNP [dm6]	A	T	2.494e^-4	0.991	INTRON ASPP
2L	6804669	2L_6804669_SNP [dm3] 2L_6804669_SNP [dm6]	G	A	2.494e^-4	0.991	UTR_3_PRIME CG17375 DOWNSTREAM CG11236	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	19724287	2R_19724287_SNP [dm3] 2R_23836764_SNP [dm6]	T	C	2.501e^-4	0.991	SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6769570	3R_6769570_SNP [dm3] 3R_10943848_SNP [dm6]	A	C	2.507e^-4	0.991	INTERGENIC
2R	15484710	2R_15484710_SNP [dm3] 2R_19597205_SNP [dm6]	G	T	2.509e^-4	0.991	DOWNSTREAM CG16716 INTRON sm
2R	12161948	2R_12161948_SNP [dm3] 2R_16274443_SNP [dm6]	A	G	2.509e^-4	0.991	NON_SYNONYMOUS_CODING CG33017
3L	10016507	3L_10016507_DEL [dm3] 3L_10023407_DEL [dm6]	AGGAAA	A	2.553e^-4	0.991	INTRON dpr6
2R	16916987	2R_16916987_SNP [dm3] 2R_21029482_SNP [dm6]	C	T	2.559e^-4	0.991	EXON CR45148
3L	5484415	3L_5484415_SNP [dm3] 3L_5491315_SNP [dm6]	C	T	2.573e^-4	0.991	INTERGENIC
2L	12153624	2L_12153624_SNP [dm3] 2L_12153624_SNP [dm6]	A	G	2.574e^-4	0.991	NON_SYNONYMOUS_CODING CG31760
2L	4185110	2L_4185110_SNP [dm3] 2L_4185110_SNP [dm6]	C	A	2.621e^-4	0.991	UPSTREAM CR44057 INTERGENIC
3L	3406147	3L_3406147_SNP [dm3] 3L_3406147_SNP [dm6]	G	A	2.634e^-4	0.991	INTRON sty
3L	9106853	3L_9106853_SNP [dm3] 3L_9113753_SNP [dm6]	G	A	2.649e^-4	0.991	INTRON bol	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	4432242	2L_4432242_SNP [dm3] 2L_4432242_SNP [dm6]	C	T	2.653e^-4	0.991	INTRON CG15431
2R	6582925	2R_6582925_SNP [dm3] 2R_10695420_SNP [dm6]	G	A	2.662e^-4	0.991	INTRON stan
3R	22684852	3R_22684852_SNP [dm3] 3R_26859130_SNP [dm6]	C	T	2.666e^-4	0.991	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	9596297	3L_9596297_SNP [dm3] 3L_9603197_SNP [dm6]	G	A	2.674e^-4	0.991	UPSTREAM CG3280 DOWNSTREAM CG3306 INTERGENIC
3L	6568607	3L_6568607_DEL [dm3] 3L_6575507_DEL [dm6]	ACTTAATAATATT...	A	2.685e^-4	0.991	INTRON CG18769 & 1 other
3L	16989130	3L_16989130_SNP [dm3] 3L_16996030_SNP [dm6]	T	G	2.688e^-4	0.991	SYNONYMOUS_CODING CG3764	TF binding site mE1_TFBS_cad
X	12414155	X_12414155_SNP [dm3] X_12520122_SNP [dm6]	C	T	2.694e^-4	0.991	SYNONYMOUS_CODING CG43921	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2L	4821468	2L_4821468_INS [dm3] 2L_4821468_INS [dm6]	T	TC	2.709e^-4	0.991	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4821545	2L_4821545_SNP [dm3] 2L_4821545_SNP [dm6]	A	T	2.709e^-4	0.991	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	4821554	2L_4821554_SNP [dm3] 2L_4821554_SNP [dm6]	C	A	2.709e^-4	0.991	UPSTREAM CG15628 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	6556335	3L_6556335_SNP [dm3] 3L_6563235_SNP [dm6]	A	G	2.714e^-4	0.991	UTR_3_PRIME jv INTRON CG18769
3L	10647551	3L_10647551_SNP [dm3] 3L_10654451_SNP [dm6]	C	T	2.718e^-4	0.991	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3495653	2L_3495653_SNP [dm3] 2L_3495653_SNP [dm6]	G	A	2.720e^-4	0.991	SYNONYMOUS_CODING tim UTR_3_PRIME tim
X	14400695	X_14400695_SNP [dm3] X_14506662_SNP [dm6]	G	C	2.726e^-4	0.991	INTERGENIC
2L	13875819	2L_13875819_SNP [dm3] 2L_13875819_SNP [dm6]	T	G	2.734e^-4	0.991	INTRON CenG1A
3R	17157609	3R_17157609_SNP [dm3] 3R_21331887_SNP [dm6]	G	T	2.742e^-4	0.991	INTRON CG16791
2R	16958357	2R_16958357_SNP [dm3] 2R_21070852_SNP [dm6]	T	C	2.750e^-4	0.991	SYNONYMOUS_CODING CG10527 EXON CR44704	TF binding site mE1_TFBS_cad
3L	1975899	3L_1975899_SNP [dm3] 3L_1975899_SNP [dm6]	G	C	2.762e^-4	0.991	INTERGENIC
3L	18400314	3L_18400314_SNP [dm3] 3L_18407214_SNP [dm6]	A	T	2.768e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
2L	3541846	2L_3541846_INS [dm3] 2L_3541846_INS [dm6]	T	TT	2.769e^-4	0.991	INTRON drm	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	846223	3L_846223_SNP [dm3] 3L_846223_SNP [dm6]	C	T	2.769e^-4	0.991	SYNONYMOUS_CODING CG13889	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	3353639	X_3353639_SNP [dm3] X_3459606_SNP [dm6]	A	G	2.798e^-4	0.991	SYNONYMOUS_CODING CG16782 UPSTREAM CG10801 INTRON CR44999
X	3353642	X_3353642_SNP [dm3] X_3459609_SNP [dm6]	G	A	2.798e^-4	0.991	SYNONYMOUS_CODING CG16782 UPSTREAM CG10801 INTRON CR44999
2L	11762891	2L_11762891_DEL [dm3] 2L_11762891_DEL [dm6]	AA	A	2.801e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	990109	X_990109_SNP [dm3] X_1096076_SNP [dm6]	A	C	2.803e^-4	0.991	INTRON CG3655
3R	9536393	3R_9536393_SNP [dm3] 3R_13710671_SNP [dm6]	A	C	2.812e^-4	0.991	UPSTREAM CG31469 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536416	3R_9536416_SNP [dm3] 3R_13710694_SNP [dm6]	C	A	2.812e^-4	0.991	UPSTREAM CG31469 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536419	3R_9536419_DEL [dm3] 3R_13710697_DEL [dm6]	TG	A	2.812e^-4	0.991	UPSTREAM CG31469 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	9536428	3R_9536428_SNP [dm3] 3R_13710706_SNP [dm6]	T	A	2.812e^-4	0.991	UPSTREAM CG31469 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5508834	2L_5508834_SNP [dm3] 2L_5508834_SNP [dm6]	C	T	2.822e^-4	0.991	INTERGENIC
3L	2578086	3L_2578086_SNP [dm3] 3L_2578086_SNP [dm6]	C	A	2.822e^-4	0.991	INTRON msn
3L	2578092	3L_2578092_SNP [dm3] 3L_2578092_SNP [dm6]	T	C	2.822e^-4	0.991	INTRON msn
2L	1453915	2L_1453915_SNP [dm3] 2L_1453915_SNP [dm6]	A	G	2.830e^-4	0.991	INTERGENIC
2L	21053884	2L_21053884_INS [dm3] 2L_21053884_INS [dm6]	C	CATCT	2.831e^-4	0.991	INTRON Itgbetanu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14687773	2L_14687773_SNP [dm3] 2L_14687773_SNP [dm6]	A	G	2.832e^-4	0.991	INTRON osp
2L	12538149	2L_12538149_SNP [dm3] 2L_12538149_SNP [dm6]	C	A	2.838e^-4	0.991	SYNONYMOUS_CODING bun	TF binding site mE1_TFBS_chinmo
3R	3657952	3R_3657952_SNP [dm3] 3R_7832230_SNP [dm6]	A	G	2.841e^-4	0.991	INTRON CG34384
2R	2641950	2R_2641950_INS [dm3] 2R_6754445_INS [dm6]	T	TGTT	2.851e^-4	0.991	SPLICE_SITE_REGION Eb1 INTRON Eb1
X	14881637	X_14881637_SNP [dm3] X_14987604_SNP [dm6]	A	G	2.856e^-4	0.991	INTRON eag	TF binding site BDTNP1_TFBS_dl
X	14881864	X_14881864_SNP [dm3] X_14987831_SNP [dm6]	T	A	2.856e^-4	0.991	INTRON eag	TF binding site BDTNP1_TFBS_dl
3L	9735352	3L_9735352_SNP [dm3] 3L_9742252_SNP [dm6]	T	A	2.860e^-4	0.991	INTRON CG42268 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12514508	2R_12514508_SNP [dm3] 2R_16627003_SNP [dm6]	A	T	2.863e^-4	0.991	UTR_3_PRIME Alk
2R	16450163	2R_16450163_SNP [dm3] 2R_20562658_SNP [dm6]	T	G	2.868e^-4	0.991	SYNONYMOUS_CODING CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm EXON CR44653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16960757	2R_16960757_SNP [dm3] 2R_21073252_SNP [dm6]	C	A	2.868e^-4	0.991	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11477717	3L_11477717_SNP [dm3] 3L_11484617_SNP [dm6]	T	A	2.870e^-4	0.991	INTERGENIC
2R	1088370	2R_1088370_SNP [dm3] 2R_5200865_SNP [dm6]	C	G	2.874e^-4	0.991	INTRON Nipped-A
3L	1630535	3L_1630535_SNP [dm3] 3L_1630535_SNP [dm6]	T	G	2.883e^-4	0.991	UTR_3_PRIME nSyb
X	3414704	X_3414704_DEL [dm3] X_3520671_DEL [dm6]	CTC	C	2.885e^-4	0.991	INTRON CR44999 & 1 other
3L	14100655	3L_14100655_SNP [dm3] 3L_14107555_SNP [dm6]	T	G	2.895e^-4	0.991	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
3L	17218702	3L_17218702_SNP [dm3] 3L_17225602_SNP [dm6]	G	A	2.900e^-4	0.991	INTRON Rbp6
X	12806717	X_12806717_SNP [dm3] X_12912684_SNP [dm6]	A	T	2.918e^-4	0.991	DOWNSTREAM CG4645 EXON CR45625
3R	8993958	3R_8993958_SNP [dm3] 3R_13168236_SNP [dm6]	T	C	2.940e^-4	0.991	INTERGENIC
3R	16708914	3R_16708914_SNP [dm3] 3R_20883192_SNP [dm6]	C	T	2.954e^-4	0.991	INTERGENIC
2L	20558069	2L_20558069_INS [dm3] 2L_20558069_INS [dm6]	G	GG	2.959e^-4	0.991	INTERGENIC
2L	4185040	2L_4185040_SNP [dm3] 2L_4185040_SNP [dm6]	T	C	2.963e^-4	0.991	UPSTREAM CR44057 INTERGENIC
3L	13101313	3L_13101313_SNP [dm3] 3L_13108213_SNP [dm6]	C	T	2.967e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2R	19724204	2R_19724204_SNP [dm3] 2R_23836681_SNP [dm6]	T	G	2.970e^-4	0.991	NON_SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6944180	3L_6944180_SNP [dm3] 3L_6951080_SNP [dm6]	A	G	2.974e^-4	0.991	SYNONYMOUS_CODING CG10077 DOWNSTREAM CG10077	TF binding site mE1_TFBS_inv
X	14885750	X_14885750_SNP [dm3] X_14991717_SNP [dm6]	C	G	2.979e^-4	0.991	INTRON eag
2L	9171948	2L_9171948_SNP [dm3] 2L_9171948_SNP [dm6]	T	G	2.985e^-4	0.991	INTRON tai
3L	5169211	3L_5169211_INS [dm3] 3L_5176111_INS [dm6]	A	ATACA	3.010e^-4	0.991	INTRON shep
2R	15451247	2R_15451247_SNP [dm3] 2R_19563742_SNP [dm6]	G	A	3.018e^-4	0.991	INTRON sm
3L	18311180	3L_18311180_SNP [dm3] 3L_18318080_SNP [dm6]	A	T	3.031e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15350676	3R_15350676_SNP [dm3] 3R_19524954_SNP [dm6]	C	T	3.034e^-4	0.991	SYNONYMOUS_CODING Dys INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6277406	2R_6277406_SNP [dm3] 2R_10389901_SNP [dm6]	A	C	3.037e^-4	0.991	INTRON CG42732
2L	9172055	2L_9172055_SNP [dm3] 2L_9172055_SNP [dm6]	T	G	3.038e^-4	0.991	INTRON tai
2R	19569995	2R_19569995_SNP [dm3] 2R_23682472_SNP [dm6]	G	A	3.038e^-4	0.991	SYNONYMOUS_CODING St1 UPSTREAM St3	TF binding site mE1_TFBS_chinmo
X	16771091	X_16771091_SNP [dm3] X_16877058_SNP [dm6]	G	A	3.046e^-4	0.991	UPSTREAM CG13003 INTERGENIC
2R	11966778	2R_11966778_SNP [dm3] 2R_16079273_SNP [dm6]	G	C	3.047e^-4	0.991	UPSTREAM CR43415 INTERGENIC
3L	7853734	3L_7853734_SNP [dm3] 3L_7860634_SNP [dm6]	C	T	3.050e^-4	0.991	INTRON Pdp1
3L	7926221	3L_7926221_SNP [dm3] 3L_7933121_SNP [dm6]	T	C	3.055e^-4	0.991	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_HSA
3L	15112359	3L_15112359_SNP [dm3] 3L_15119259_SNP [dm6]	T	C	3.057e^-4	0.991	SYNONYMOUS_CODING Cep135 DOWNSTREAM CG16959	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	17002971	3L_17002971_SNP [dm3] 3L_17009871_SNP [dm6]	C	T	3.062e^-4	0.991	INTRON CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	10516984	2R_10516984_SNP [dm3] 2R_14629479_SNP [dm6]	A	T	3.063e^-4	0.991	UPSTREAM CG10131 INTERGENIC
3R	20460830	3R_20460830_SNP [dm3] 3R_24635108_SNP [dm6]	C	T	3.064e^-4	0.991	UTR_5_PRIME CG43222 UPSTREAM CG43222 DOWNSTREAM puf & 1 other
2R	16092536	2R_16092536_SNP [dm3] 2R_20205031_SNP [dm6]	G	T	3.069e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	13871037	2L_13871037_SNP [dm3] 2L_13871037_SNP [dm6]	C	T	3.074e^-4	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	13871055	2L_13871055_SNP [dm3] 2L_13871055_SNP [dm6]	G	C	3.074e^-4	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	9997409	2L_9997409_SNP [dm3] 2L_9997409_SNP [dm6]	T	C	3.076e^-4	0.991	SYNONYMOUS_CODING SoYb UPSTREAM CG31875 INTRON CG31875	TF binding site mE1_TFBS_HSA
2R	2624625	2R_2624625_SNP [dm3] 2R_6737120_SNP [dm6]	C	T	3.080e^-4	0.991	INTRON l_2_01289
2R	2631221	2R_2631221_SNP [dm3] 2R_6743716_SNP [dm6]	A	C	3.080e^-4	0.991	SYNONYMOUS_CODING phtf
2R	2636824	2R_2636824_SNP [dm3] 2R_6749319_SNP [dm6]	A	G	3.080e^-4	0.991	UTR_5_PRIME Eb1 UPSTREAM Eb1 DOWNSTREAM CG3267	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	2637023	2R_2637023_SNP [dm3] 2R_6749518_SNP [dm6]	A	T	3.080e^-4	0.991	UTR_5_PRIME Eb1 DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2637293	2R_2637293_SNP [dm3] 2R_6749788_SNP [dm6]	A	G	3.080e^-4	0.991	DOWNSTREAM CG3267 INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2637711	2R_2637711_SNP [dm3] 2R_6750206_SNP [dm6]	T	C	3.080e^-4	0.991	INTRON Eb1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	9859766	2L_9859766_SNP [dm3] 2L_9859766_SNP [dm6]	T	C	3.080e^-4	0.991	INTRON nAChRalpha6
2R	3291787	2R_3291787_SNP [dm3] 2R_7404282_SNP [dm6]	G	C	3.089e^-4	0.991	NON_SYNONYMOUS_CODING CG43267 DOWNSTREAM CG43123 INTRON Eaf
2L	7805566	2L_7805566_SNP [dm3] 2L_7805566_SNP [dm6]	T	A	3.098e^-4	0.991	SYNONYMOUS_CODING cdc14	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	2354707	3L_2354707_SNP [dm3] 3L_2354707_SNP [dm6]	C	T	3.109e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2636725	2R_2636725_SNP [dm3] 2R_6749220_SNP [dm6]	A	C	3.114e^-4	0.991	UPSTREAM Eb1 DOWNSTREAM CG3267 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_Trl
3R	6311634	3R_6311634_SNP [dm3] 3R_10485912_SNP [dm6]	C	G	3.121e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3L	7203335	3L_7203335_SNP [dm3] 3L_7210235_SNP [dm6]	G	A	3.124e^-4	0.991	INTERGENIC
3L	11150457	3L_11150457_SNP [dm3] 3L_11157357_SNP [dm6]	C	A	3.131e^-4	0.991	INTRON CG32082	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	14884854	X_14884854_SNP [dm3] X_14990821_SNP [dm6]	C	A	3.133e^-4	0.991	INTRON eag
3R	20133026	3R_20133026_SNP [dm3] 3R_24307304_SNP [dm6]	T	A	3.139e^-4	0.991	INTRON crb	TF binding site mE1_TFBS_cad
X	15171523	X_15171523_SNP [dm3] X_15277490_SNP [dm6]	C	T	3.181e^-4	0.991	INTERGENIC
2R	20681180	2R_20681180_DEL [dm3] 2R_24793657_DEL [dm6]	TT	T	3.197e^-4	0.991	UPSTREAM CR43257 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	8896377	2L_8896377_SNP [dm3] 2L_8896377_SNP [dm6]	C	T	3.220e^-4	0.991	INTERGENIC
2R	15406280	2R_15406280_INS [dm3] 2R_19518775_INS [dm6]	T	TCT	3.224e^-4	0.991	UTR_3_PRIME sm
2L	1762212	2L_1762212_DEL [dm3] 2L_1762212_DEL [dm6]	ACTCAA	A	3.232e^-4	0.991	INTERGENIC
3L	13937264	3L_13937264_SNP [dm3] 3L_13944164_SNP [dm6]	G	T	3.242e^-4	0.991	INTRON CG32137
3R	18141023	3R_18141023_SNP [dm3] 3R_22315301_SNP [dm6]	G	A	3.243e^-4	0.991	INTRON CG34377
3R	18141026	3R_18141026_SNP [dm3] 3R_22315304_SNP [dm6]	T	C	3.243e^-4	0.991	INTRON CG34377
2R	6859980	2R_6859980_SNP [dm3] 2R_10972475_SNP [dm6]	G	A	3.252e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
3R	11106913	3R_11106913_SNP [dm3] 3R_15281191_SNP [dm6]	A	C	3.253e^-4	0.991	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11106929	3R_11106929_SNP [dm3] 3R_15281207_SNP [dm6]	G	A	3.253e^-4	0.991	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	11106930	3R_11106930_SNP [dm3] 3R_15281208_SNP [dm6]	T	A	3.253e^-4	0.991	UPSTREAM Tm1 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	9878103	3R_9878103_SNP [dm3] 3R_14052381_SNP [dm6]	A	T	3.261e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	15620925	2L_15620925_SNP [dm3] 2L_15620925_SNP [dm6]	T	C	3.268e^-4	0.991	INTERGENIC
2R	13801285	2R_13801285_DEL [dm3] 2R_17913780_DEL [dm6]	CAT	C	3.270e^-4	0.991	INTRON Elk
2L	9184705	2L_9184705_SNP [dm3] 2L_9184705_SNP [dm6]	T	G	3.276e^-4	0.991	INTRON tai
2R	19230030	2R_19230030_SNP [dm3] 2R_23342507_SNP [dm6]	A	C	3.297e^-4	0.991	DOWNSTREAM CG3502 INTERGENIC	TF binding site mE1_TFBS_cad
X	5886414	X_5886414_SNP [dm3] X_5992381_SNP [dm6]	C	T	3.303e^-4	0.991	UTR_3_PRIME CG5966	TF binding site mE1_TFBS_bab1
3L	18400315	3L_18400315_SNP [dm3] 3L_18407215_SNP [dm6]	T	G	3.308e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
3L	10016521	3L_10016521_SNP [dm3] 3L_10023421_SNP [dm6]	T	A	3.326e^-4	0.991	INTRON dpr6
3L	10016523	3L_10016523_DEL [dm3] 3L_10023423_DEL [dm6]	GGCTT	A	3.326e^-4	0.991	INTRON dpr6
2L	936218	2L_936218_SNP [dm3] 2L_936218_SNP [dm6]	C	G	3.343e^-4	0.991	INTRON CG4341	TF binding site mE1_TFBS_Trl
3R	8115748	3R_8115748_INS [dm3] 3R_12290026_INS [dm6]	T	GAAGGAA	3.344e^-4	0.991	INTRON svp
3L	3408529	3L_3408529_SNP [dm3] 3L_3408529_SNP [dm6]	C	A	3.348e^-4	0.991	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	16951872	2R_16951872_SNP [dm3] 2R_21064367_SNP [dm6]	T	G	3.352e^-4	0.991	SYNONYMOUS_CODING Cht12
3R	25998054	3R_25998054_SNP [dm3] 3R_30172332_SNP [dm6]	T	G	3.356e^-4	0.991	UTR_3_PRIME Mlc2
2R	16450184	2R_16450184_SNP [dm3] 2R_20562679_SNP [dm6]	C	T	3.358e^-4	0.991	SYNONYMOUS_CODING CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm EXON CR44653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16966776	2R_16966776_SNP [dm3] 2R_21079271_SNP [dm6]	G	A	3.370e^-4	0.991	INTRON Treh
2R	6859925	2R_6859925_SNP [dm3] 2R_10972420_SNP [dm6]	G	A	3.370e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6859945	2R_6859945_SNP [dm3] 2R_10972440_SNP [dm6]	C	T	3.370e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2R	16043884	2R_16043884_SNP [dm3] 2R_20156379_SNP [dm6]	G	A	3.375e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10016471	3L_10016471_SNP [dm3] 3L_10023371_SNP [dm6]	C	A	3.376e^-4	0.991	INTRON dpr6
3L	10016477	3L_10016477_SNP [dm3] 3L_10023377_SNP [dm6]	A	T	3.376e^-4	0.991	INTRON dpr6
X	19623484	X_19623484_SNP [dm3] X_19729451_SNP [dm6]	A	G	3.395e^-4	0.991	UTR_3_PRIME CG12531
3L	3922178	3L_3922178_SNP [dm3] 3L_3922178_SNP [dm6]	T	G	3.397e^-4	0.991	INTRON Eip63F-1
3L	14016169	3L_14016169_SNP [dm3] 3L_14023069_SNP [dm6]	T	C	3.406e^-4	0.991	SYNONYMOUS_CODING ptip
3L	2578090	3L_2578090_SNP [dm3] 3L_2578090_SNP [dm6]	A	G	3.416e^-4	0.991	INTRON msn
3L	2578106	3L_2578106_INS [dm3] 3L_2578106_INS [dm6]	T	TT	3.416e^-4	0.991	INTRON msn
3L	2578110	3L_2578110_DEL [dm3] 3L_2578110_DEL [dm6]	ATATA	GGG	3.416e^-4	0.991	INTRON msn
3L	9603381	3L_9603381_SNP [dm3] 3L_9610281_SNP [dm6]	C	G	3.416e^-4	0.991	INTRON CG3280
3L	9604042	3L_9604042_SNP [dm3] 3L_9610942_SNP [dm6]	C	A	3.416e^-4	0.991	INTRON CG3280
3L	9604064	3L_9604064_SNP [dm3] 3L_9610964_SNP [dm6]	T	C	3.416e^-4	0.991	INTRON CG3280
3L	9604208	3L_9604208_SNP [dm3] 3L_9611108_SNP [dm6]	C	G	3.416e^-4	0.991	INTRON CG3280
2R	13400717	2R_13400717_SNP [dm3] 2R_17513212_SNP [dm6]	C	G	3.417e^-4	0.991	SYNONYMOUS_CODING CG4847	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13401277	2R_13401277_SNP [dm3] 2R_17513772_SNP [dm6]	T	G	3.417e^-4	0.991	UTR_3_PRIME CG4847 UPSTREAM CG4853	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10066140	2L_10066140_SNP [dm3] 2L_10066140_SNP [dm6]	G	A	3.426e^-4	0.991	INTRON CG44153	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26038212	3R_26038212_SNP [dm3] 3R_30212490_SNP [dm6]	A	G	3.431e^-4	0.991	UTR_3_PRIME CecA2 UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 1 other
3L	6568650	3L_6568650_SNP [dm3] 3L_6575550_SNP [dm6]	G	A	3.437e^-4	0.991	INTRON CG18769 & 1 other
3L	12853593	3L_12853593_SNP [dm3] 3L_12860493_SNP [dm6]	C	T	3.439e^-4	0.991	NON_SYNONYMOUS_CODING CG32107	TF binding site mE1_TFBS_sens
2R	12387811	2R_12387811_SNP [dm3] 2R_16500306_SNP [dm6]	A	G	3.444e^-4	0.991	UTR_5_PRIME Sema-2a UPSTREAM CG7813	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11342938	3L_11342938_SNP [dm3] 3L_11349838_SNP [dm6]	T	C	3.450e^-4	0.991	UPSTREAM CR45251 INTERGENIC
3R	14699916	3R_14699916_DEL [dm3] 3R_18874194_DEL [dm6]	ACAT	A	3.452e^-4	0.991	INTERGENIC
3R	14699922	3R_14699922_SNP [dm3] 3R_18874200_SNP [dm6]	G	T	3.452e^-4	0.991	INTERGENIC
2L	9949647	2L_9949647_SNP [dm3] 2L_9949647_SNP [dm6]	A	G	3.454e^-4	0.991	DOWNSTREAM mir-87 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11468824	3R_11468824_SNP [dm3] 3R_15643102_SNP [dm6]	G	A	3.461e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	11468839	3R_11468839_SNP [dm3] 3R_15643117_SNP [dm6]	A	C	3.461e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	8669355	2R_8669355_SNP [dm3] 2R_12781850_SNP [dm6]	A	C	3.468e^-4	0.991	INTRON sca	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	27113529	3R_27113529_SNP [dm3] 3R_31287807_SNP [dm6]	T	C	3.482e^-4	0.991	INTERGENIC
2L	15204095	2L_15204095_SNP [dm3] 2L_15204095_SNP [dm6]	A	G	3.484e^-4	0.991	DOWNSTREAM CR43357 INTERGENIC	transposable element FlyBase
3L	7696525	3L_7696525_SNP [dm3] 3L_7703425_SNP [dm6]	C	T	3.489e^-4	0.991	INTRON CG32373 & 1 other
2R	16043752	2R_16043752_SNP [dm3] 2R_20156247_SNP [dm6]	T	A	3.495e^-4	0.991	INTERGENIC
3L	468512	3L_468512_SNP [dm3] 3L_468512_SNP [dm6]	C	T	3.496e^-4	0.991	INTRON klar
3L	11447807	3L_11447807_SNP [dm3] 3L_11454707_SNP [dm6]	G	T	3.497e^-4	0.991	INTERGENIC
3L	5349414	3L_5349414_SNP [dm3] 3L_5356314_SNP [dm6]	G	C	3.508e^-4	0.991	UPSTREAM tRNA:CR32420 & 1 other DOWNSTREAM tRNA:CR32421 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	9532770	3R_9532770_SNP [dm3] 3R_13707048_SNP [dm6]	A	G	3.511e^-4	0.991	INTRON Adgf-C
3R	18102355	3R_18102355_SNP [dm3] 3R_22276633_SNP [dm6]	G	A	3.523e^-4	0.991	INTRON SKIP
X	9273280	X_9273280_SNP [dm3] X_9379247_SNP [dm6]	A	T	3.526e^-4	0.991	INTRON mgl
3L	8484773	3L_8484773_SNP [dm3] 3L_8491673_SNP [dm6]	T	A	3.531e^-4	0.991	INTRON CG43163	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5263945	3L_5263945_INS [dm3] 3L_5270845_INS [dm6]	T	TT	3.533e^-4	0.991	INTRON shep
2L	14108895	2L_14108895_SNP [dm3] 2L_14108895_SNP [dm6]	T	G	3.535e^-4	0.991	SYNONYMOUS_CODING CG15293 DOWNSTREAM CG31769
3R	15049435	3R_15049435_SNP [dm3] 3R_19223713_SNP [dm6]	G	T	3.545e^-4	0.991	INTRON vib
X	13938258	X_13938258_INS [dm3] X_14044225_INS [dm6]	A	CC	3.546e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11690242	2R_11690242_SNP [dm3] 2R_15802737_SNP [dm6]	G	A	3.568e^-4	0.991	INTRON Zasp52 & 1 other
2L	10967334	2L_10967334_SNP [dm3] 2L_10967334_SNP [dm6]	A	G	3.572e^-4	0.991	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	6154103	3L_6154103_SNP [dm3] 3L_6161003_SNP [dm6]	C	A	3.579e^-4	0.991	NON_SYNONYMOUS_CODING Cpr65Az
X	16771032	X_16771032_SNP [dm3] X_16876999_SNP [dm6]	A	C	3.579e^-4	0.991	UPSTREAM CG13003 INTERGENIC
2R	13502241	2R_13502241_SNP [dm3] 2R_17614736_SNP [dm6]	C	T	3.586e^-4	0.991	INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	18400308	3L_18400308_SNP [dm3] 3L_18407208_SNP [dm6]	G	A	3.611e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
X	20017198	X_20017198_SNP [dm3] X_20123165_SNP [dm6]	T	A	3.620e^-4	0.991	DOWNSTREAM CG34331 INTRON CG34331
2L	7351722	2L_7351722_SNP [dm3] 2L_7351722_SNP [dm6]	A	C	3.629e^-4	0.991	INTRON Wnt6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	10010891	3L_10010891_SNP [dm3] 3L_10017791_SNP [dm6]	A	G	3.632e^-4	0.991	INTRON dpr6
3L	7705343	3L_7705343_DEL [dm3] 3L_7712243_DEL [dm6]	TT	T	3.638e^-4	0.991	INTRON CG32373 & 1 other
2L	9857561	2L_9857561_SNP [dm3] 2L_9857561_SNP [dm6]	C	G	3.647e^-4	0.991	INTRON nAChRalpha6
3L	14016186	3L_14016186_SNP [dm3] 3L_14023086_SNP [dm6]	A	G	3.660e^-4	0.991	SYNONYMOUS_CODING ptip
3L	12357220	3L_12357220_SNP [dm3] 3L_12364120_SNP [dm6]	T	C	3.668e^-4	0.991	INTERGENIC
2R	11866281	2R_11866281_SNP [dm3] 2R_15978776_SNP [dm6]	G	C	3.670e^-4	0.991	SYNONYMOUS_CODING Strn-Mlck
2R	11866308	2R_11866308_SNP [dm3] 2R_15978803_SNP [dm6]	G	A	3.670e^-4	0.991	SYNONYMOUS_CODING Strn-Mlck
2L	10199337	2L_10199337_SNP [dm3] 2L_10199337_SNP [dm6]	C	G	3.679e^-4	0.991	UPSTREAM Sur DOWNSTREAM Ripalpha INTERGENIC
3L	6154102	3L_6154102_SNP [dm3] 3L_6161002_SNP [dm6]	G	T	3.690e^-4	0.991	NON_SYNONYMOUS_CODING Cpr65Az
3R	26006780	3R_26006780_SNP [dm3] 3R_30181058_SNP [dm6]	T	A	3.697e^-4	0.991	UTR_3_PRIME Bet5 DOWNSTREAM CG15530
2R	19569678	2R_19569678_SNP [dm3] 2R_23682155_SNP [dm6]	G	T	3.700e^-4	0.991	NON_SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7632221	3R_7632221_SNP [dm3] 3R_11806499_SNP [dm6]	G	T	3.702e^-4	0.991	UTR_5_PRIME ClC-a INTRON ClC-a	TF binding site mE1_TFBS_HSA
3L	10016501	3L_10016501_SNP [dm3] 3L_10023401_SNP [dm6]	A	T	3.705e^-4	0.991	INTRON dpr6
3L	10016502	3L_10016502_SNP [dm3] 3L_10023402_SNP [dm6]	T	A	3.705e^-4	0.991	INTRON dpr6
X	21310633	X_21310633_SNP [dm3] X_21439606_SNP [dm6]	C	T	3.726e^-4	0.991	INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	12387810	2R_12387810_SNP [dm3] 2R_16500305_SNP [dm6]	A	T	3.730e^-4	0.991	UTR_5_PRIME Sema-2a UPSTREAM CG7813	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	21854722	2L_21854722_SNP [dm3] 2L_21854722_SNP [dm6]	A	T	3.733e^-4	0.991	UPSTREAM CR44917 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	13541212	2R_13541212_SNP [dm3] 2R_17653707_SNP [dm6]	A	C	3.737e^-4	0.991	INTRON CCHa1-R
3R	9276387	3R_9276387_SNP [dm3] 3R_13450665_SNP [dm6]	T	C	3.741e^-4	0.991	UTR_5_PRIME CG14372	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	16828242	3L_16828242_SNP [dm3] 3L_16835142_SNP [dm6]	G	A	3.746e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2665001	2L_2665001_SNP [dm3] 2L_2665001_SNP [dm6]	T	C	3.748e^-4	0.991	UPSTREAM CG9879 INTERGENIC
3R	15124640	3R_15124640_SNP [dm3] 3R_19298918_SNP [dm6]	G	T	3.748e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11149377	2L_11149377_SNP [dm3] 2L_11149377_SNP [dm6]	C	G	3.754e^-4	0.991	UPSTREAM Gyc32E INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	8877647	X_8877647_SNP [dm3] X_8983614_SNP [dm6]	T	A	3.771e^-4	0.991	DOWNSTREAM CG12662 INTRON rdgA & 1 other
3R	15508760	3R_15508760_INS [dm3] 3R_19683038_INS [dm6]	T	TT	3.772e^-4	0.991	INTRON Naam
3R	9878184	3R_9878184_SNP [dm3] 3R_14052462_SNP [dm6]	C	G	3.782e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18400221	3L_18400221_SNP [dm3] 3L_18407121_SNP [dm6]	T	A	3.783e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
3R	6802773	3R_6802773_SNP [dm3] 3R_10977051_SNP [dm6]	C	G	3.783e^-4	0.991	INTRON CG34114
2R	12387766	2R_12387766_SNP [dm3] 2R_16500261_SNP [dm6]	C	T	3.801e^-4	0.991	START_GAINED Sema-2a UTR_5_PRIME Sema-2a UPSTREAM CG7813	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10014526	3L_10014526_SNP [dm3] 3L_10021426_SNP [dm6]	T	C	3.805e^-4	0.991	INTRON dpr6
3L	10016417	3L_10016417_SNP [dm3] 3L_10023317_SNP [dm6]	T	A	3.805e^-4	0.991	INTRON dpr6
2L	13875961	2L_13875961_SNP [dm3] 2L_13875961_SNP [dm6]	T	C	3.810e^-4	0.991	INTRON CenG1A
3L	2578104	3L_2578104_SNP [dm3] 3L_2578104_SNP [dm6]	C	T	3.822e^-4	0.991	INTRON msn
X	12820845	X_12820845_SNP [dm3] X_12926812_SNP [dm6]	C	T	3.822e^-4	0.991	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	8569272	3L_8569272_SNP [dm3] 3L_8576172_SNP [dm6]	C	A	3.828e^-4	0.991	UPSTREAM CG43078 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
2R	12800014	2R_12800014_SNP [dm3] 2R_16912509_SNP [dm6]	T	C	3.836e^-4	0.991	INTERGENIC
X	16597803	X_16597803_SNP [dm3] X_16703770_SNP [dm6]	G	A	3.840e^-4	0.991	SYNONYMOUS_CODING CG9673 UPSTREAM CG4653 INTRON CG4678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6530076	2R_6530076_SNP [dm3] 2R_10642571_SNP [dm6]	C	T	3.847e^-4	0.991	SYNONYMOUS_CODING Git DOWNSTREAM CG11883	TF binding site mE1_TFBS_HSA
2R	12149062	2R_12149062_SNP [dm3] 2R_16261557_SNP [dm6]	G	A	3.858e^-4	0.991	DOWNSTREAM fidipidine INTERGENIC
X	5739353	X_5739353_DEL [dm3] X_5845320_DEL [dm6]	AACCTTTG	A	3.864e^-4	0.991	UTR_5_PRIME CG12729
2L	9847689	2L_9847689_SNP [dm3] 2L_9847689_SNP [dm6]	G	C	3.884e^-4	0.991	UPSTREAM CR43766 INTRON nAChRalpha6
3L	7420956	3L_7420956_SNP [dm3] 3L_7427856_SNP [dm6]	G	C	3.888e^-4	0.991	INTRON CG42458
2L	7807529	2L_7807529_SNP [dm3] 2L_7807529_SNP [dm6]	T	C	3.900e^-4	0.991	INTRON cdc14
2L	7807539	2L_7807539_SNP [dm3] 2L_7807539_SNP [dm6]	C	T	3.900e^-4	0.991	INTRON cdc14
3R	7466623	3R_7466623_SNP [dm3] 3R_11640901_SNP [dm6]	T	A	3.915e^-4	0.991	INTRON Csk
3L	7251621	3L_7251621_SNP [dm3] 3L_7258521_SNP [dm6]	C	A	3.916e^-4	0.991	INTRON CG14830
3L	6308074	3L_6308074_SNP [dm3] 3L_6314974_SNP [dm6]	T	C	3.919e^-4	0.991	INTERGENIC
X	14725969	X_14725969_SNP [dm3] X_14831936_SNP [dm6]	T	G	3.920e^-4	0.991	UTR_5_PRIME CG14408 UPSTREAM CG14411	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	6621752	X_6621752_SNP [dm3] X_6727719_SNP [dm6]	G	T	3.944e^-4	0.991	UTR_5_PRIME CG3168 UPSTREAM CG3168 INTRON CG3168	TF binding site BDTNP1_TFBS_dl
X	16710714	X_16710714_SNP [dm3] X_16816681_SNP [dm6]	A	G	3.957e^-4	0.991	UPSTREAM CG4829 & 1 other INTRON CG4829
3R	18159292	3R_18159292_SNP [dm3] 3R_22333570_SNP [dm6]	T	C	3.965e^-4	0.991	SYNONYMOUS_CODING CG5391 DOWNSTREAM CG5388
2L	15558830	2L_15558830_SNP [dm3] 2L_15558830_SNP [dm6]	A	G	3.969e^-4	0.991	INTRON kek3
3L	1602723	3L_1602723_SNP [dm3] 3L_1602723_SNP [dm6]	T	C	3.973e^-4	0.991	UPSTREAM CG33791 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	8777932	X_8777932_INS [dm3] X_8883899_INS [dm6]	A	AA	3.996e^-4	0.991	INTRON Moe
X	4677022	X_4677022_SNP [dm3] X_4782989_SNP [dm6]	T	G	4.001e^-4	0.991	UPSTREAM CG15471 INTERGENIC
2R	15285786	2R_15285786_DEL [dm3] 2R_19398281_DEL [dm6]	GG	G	4.002e^-4	0.991	UTR_3_PRIME hts DOWNSTREAM hts
2L	1924812	2L_1924812_SNP [dm3] 2L_1924812_SNP [dm6]	A	G	4.002e^-4	0.991	INTRON CG7337
3L	15111369	3L_15111369_SNP [dm3] 3L_15118269_SNP [dm6]	G	C	4.008e^-4	0.991	SYNONYMOUS_CODING Cep135	TF binding site mE1_TFBS_HSA
3R	14344430	3R_14344430_SNP [dm3] 3R_18518708_SNP [dm6]	G	C	4.014e^-4	0.991	INTRON fru
2L	10701657	2L_10701657_SNP [dm3] 2L_10701657_SNP [dm6]	A	G	4.035e^-4	0.991	UPSTREAM Lip1 DOWNSTREAM Lip2 INTERGENIC	regulatory region REDfly_CRMs
2L	9857030	2L_9857030_SNP [dm3] 2L_9857030_SNP [dm6]	G	A	4.039e^-4	0.991	INTRON nAChRalpha6
2R	9315836	2R_9315836_SNP [dm3] 2R_13428331_SNP [dm6]	T	C	4.042e^-4	0.991	INTRON CG42321
3L	11549969	3L_11549969_SNP [dm3] 3L_11556869_SNP [dm6]	T	C	4.042e^-4	0.991	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
X	14727583	X_14727583_SNP [dm3] X_14833550_SNP [dm6]	T	A	4.046e^-4	0.991	SYNONYMOUS_CODING CG14411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	936221	2L_936221_SNP [dm3] 2L_936221_SNP [dm6]	C	A	4.048e^-4	0.991	INTRON CG4341	TF binding site mE1_TFBS_Trl
2L	9108541	2L_9108541_SNP [dm3] 2L_9108541_SNP [dm6]	G	A	4.054e^-4	0.991	INTERGENIC
2L	15204097	2L_15204097_SNP [dm3] 2L_15204097_SNP [dm6]	C	G	4.058e^-4	0.991	DOWNSTREAM CR43357 INTERGENIC	transposable element FlyBase
3L	10372152	3L_10372152_SNP [dm3] 3L_10379052_SNP [dm6]	T	C	4.058e^-4	0.991	INTERGENIC
3L	15109772	3L_15109772_SNP [dm3] 3L_15116672_SNP [dm6]	A	T	4.064e^-4	0.991	UPSTREAM Cep135 DOWNSTREAM CG13458 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
3L	7928247	3L_7928247_SNP [dm3] 3L_7935147_SNP [dm6]	C	T	4.069e^-4	0.991	UPSTREAM syd INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7928630	3L_7928630_SNP [dm3] 3L_7935530_SNP [dm6]	T	C	4.069e^-4	0.991	UTR_5_PRIME syd UPSTREAM Srp9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7928838	3L_7928838_SNP [dm3] 3L_7935738_SNP [dm6]	C	A	4.069e^-4	0.991	UTR_5_PRIME syd UPSTREAM Srp9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	13998018	X_13998018_SNP [dm3] X_14103985_SNP [dm6]	G	A	4.077e^-4	0.991	UPSTREAM tRNA:S4:12Ee & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	1435486	2R_1435486_SNP [dm3] 2R_5547981_SNP [dm6]	A	T	4.086e^-4	0.991	SPLICE_SITE_REGION CG30438 INTRON CG30438	TF binding site mE1_TFBS_sens
X	4548833	X_4548833_SNP [dm3] X_4654800_SNP [dm6]	C	T	4.103e^-4	0.991	UPSTREAM CG15473 INTRON Cbp80
X	16436538	X_16436538_SNP [dm3] X_16542505_SNP [dm6]	G	A	4.103e^-4	0.991	UTR_3_PRIME CG9902
2R	14398080	2R_14398080_SNP [dm3] 2R_18510575_SNP [dm6]	G	T	4.107e^-4	0.991	INTERGENIC
X	12447572	X_12447572_SNP [dm3] X_12553539_SNP [dm6]	C	A	4.111e^-4	0.991	INTRON CG43921 & 1 other
2R	15058603	2R_15058603_SNP [dm3] 2R_19171098_SNP [dm6]	T	A	4.113e^-4	0.991	SYNONYMOUS_CODING CG10737
3L	15109580	3L_15109580_SNP [dm3] 3L_15116480_SNP [dm6]	T	A	4.117e^-4	0.991	UPSTREAM Cep135 DOWNSTREAM CG13458 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26037629	3R_26037629_SNP [dm3] 3R_30211907_SNP [dm6]	G	T	4.118e^-4	0.991	UPSTREAM CecA2 & 1 other DOWNSTREAM CecA1 & 1 other INTERGENIC
3L	9254514	3L_9254514_SNP [dm3] 3L_9261414_SNP [dm6]	T	G	4.130e^-4	0.991	INTRON GluRIB	TF binding site BDTNP1_TFBS_twi
3R	9644874	3R_9644874_SNP [dm3] 3R_13819152_SNP [dm6]	T	C	4.138e^-4	0.991	INTERGENIC
3L	7420953	3L_7420953_SNP [dm3] 3L_7427853_SNP [dm6]	A	G	4.166e^-4	0.991	INTRON CG42458
3R	23181293	3R_23181293_SNP [dm3] 3R_27355571_SNP [dm6]	A	C	4.171e^-4	0.991	INTRON CG42534
3L	20168663	3L_20168663_SNP [dm3] 3L_20175563_SNP [dm6]	G	A	4.172e^-4	0.991	INTRON CG42674
3L	18400320	3L_18400320_SNP [dm3] 3L_18407220_SNP [dm6]	T	A	4.194e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
3R	19833103	3R_19833103_SNP [dm3] 3R_24007381_SNP [dm6]	C	T	4.219e^-4	0.991	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	15767684	2R_15767684_SNP [dm3] 2R_19880179_SNP [dm6]	C	T	4.228e^-4	0.991	SYNONYMOUS_CODING CG13872	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9015894	3L_9015894_SNP [dm3] 3L_9022794_SNP [dm6]	T	G	4.241e^-4	0.991	INTERGENIC
3R	25999656	3R_25999656_SNP [dm3] 3R_30173934_SNP [dm6]	T	A	4.242e^-4	0.991	INTRON Mlc2
3L	10915354	3L_10915354_SNP [dm3] 3L_10922254_SNP [dm6]	T	C	4.258e^-4	0.991	INTERGENIC
2R	4727803	2R_4727803_SNP [dm3] 2R_8840298_SNP [dm6]	G	T	4.261e^-4	0.991	INTRON sns
3L	10016531	3L_10016531_SNP [dm3] 3L_10023431_SNP [dm6]	A	G	4.265e^-4	0.991	INTRON dpr6
3L	10016535	3L_10016535_DEL [dm3] 3L_10023435_DEL [dm6]	AAGTAAGTTCTTAATAAG...	A	4.265e^-4	0.991	INTRON dpr6
2R	15543931	2R_15543931_SNP [dm3] 2R_19656426_SNP [dm6]	T	G	4.270e^-4	0.991	EXON CR44214
3L	14100657	3L_14100657_SNP [dm3] 3L_14107557_SNP [dm6]	A	G	4.277e^-4	0.991	INTRON Sox21a	TF binding site BDTNP1_TFBS_dl
2L	8863649	2L_8863649_SNP [dm3] 2L_8863649_SNP [dm6]	T	C	4.292e^-4	0.991	SYNONYMOUS_CODING CG32986 UPSTREAM CG32987 EXON CR45260	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7007598	X_7007598_SNP [dm3] X_7113565_SNP [dm6]	A	G	4.303e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18400297	3L_18400297_SNP [dm3] 3L_18407197_SNP [dm6]	A	G	4.312e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
X	6523853	X_6523853_SNP [dm3] X_6629820_SNP [dm6]	T	C	4.313e^-4	0.991	INTRON pigs
3R	9277518	3R_9277518_SNP [dm3] 3R_13451796_SNP [dm6]	A	T	4.321e^-4	0.991	INTRON CG14372
3L	14478253	3L_14478253_SNP [dm3] 3L_14485153_SNP [dm6]	C	T	4.331e^-4	0.991	INTRON bbg
3L	7926049	3L_7926049_INS [dm3] 3L_7932949_INS [dm6]	T	TT	4.338e^-4	0.991	INTRON syd	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10967645	2L_10967645_SNP [dm3] 2L_10967645_SNP [dm6]	A	C	4.342e^-4	0.991	UPSTREAM CG33129 INTRON CG33129	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5817714	2L_5817714_SNP [dm3] 2L_5817714_SNP [dm6]	G	C	4.358e^-4	0.991	DOWNSTREAM CG31644 INTERGENIC
3L	9606409	3L_9606409_SNP [dm3] 3L_9613309_SNP [dm6]	G	A	4.359e^-4	0.991	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo
3R	16233311	3R_16233311_SNP [dm3] 3R_20407589_SNP [dm6]	C	G	4.364e^-4	0.991	UPSTREAM CG10881 INTRON Gfrl & 1 other
3L	10016392	3L_10016392_SNP [dm3] 3L_10023292_SNP [dm6]	G	T	4.384e^-4	0.991	INTRON dpr6
2L	16974558	2L_16974558_SNP [dm3] 2L_16974558_SNP [dm6]	A	G	4.386e^-4	0.991	INTRON beat-IIIb
3L	18400309	3L_18400309_SNP [dm3] 3L_18407209_SNP [dm6]	A	T	4.397e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs
3L	10372043	3L_10372043_INS [dm3] 3L_10378943_INS [dm6]	A	AGTAA	4.409e^-4	0.991	INTERGENIC
3R	7281547	3R_7281547_SNP [dm3] 3R_11455825_SNP [dm6]	G	A	4.412e^-4	0.991	INTRON CG17230 & 1 other
2L	1007166	2L_1007166_SNP [dm3] 2L_1007166_SNP [dm6]	G	C	4.412e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
3L	1628696	3L_1628696_SNP [dm3] 3L_1628696_SNP [dm6]	C	T	4.428e^-4	0.991	UPSTREAM CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	1629190	3L_1629190_SNP [dm3] 3L_1629190_SNP [dm6]	G	C	4.432e^-4	0.991	UTR_5_PRIME GC UPSTREAM CG13928	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	15204072	2L_15204072_SNP [dm3] 2L_15204072_SNP [dm6]	T	A	4.442e^-4	0.991	DOWNSTREAM CR43357 INTERGENIC
2L	9154802	2L_9154802_SNP [dm3] 2L_9154802_SNP [dm6]	A	G	4.446e^-4	0.991	INTRON CG32982
2L	16764475	2L_16764475_SNP [dm3] 2L_16764475_SNP [dm6]	A	C	4.455e^-4	0.991	INTERGENIC
2R	17125021	2R_17125021_SNP [dm3] 2R_21237516_SNP [dm6]	A	C	4.464e^-4	0.991	INTRON ASPP
2R	16342742	2R_16342742_SNP [dm3] 2R_20455237_SNP [dm6]	C	T	4.465e^-4	0.991	INTRON CG12484
X	16590087	X_16590087_SNP [dm3] X_16696054_SNP [dm6]	C	T	4.467e^-4	0.991	UPSTREAM CG4678 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10016014	3L_10016014_SNP [dm3] 3L_10022914_SNP [dm6]	T	A	4.473e^-4	0.991	INTRON dpr6
3L	10016120	3L_10016120_SNP [dm3] 3L_10023020_SNP [dm6]	C	T	4.473e^-4	0.991	INTRON dpr6
2R	15767756	2R_15767756_SNP [dm3] 2R_19880251_SNP [dm6]	T	C	4.474e^-4	0.991	SYNONYMOUS_CODING CG13872	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	15669005	X_15669005_SNP [dm3] X_15774972_SNP [dm6]	A	T	4.481e^-4	0.991	SYNONYMOUS_CODING CG43672
2R	16960893	2R_16960893_SNP [dm3] 2R_21073388_SNP [dm6]	G	A	4.483e^-4	0.991	UPSTREAM CG10527 & 1 other INTERGENIC
X	11743848	X_11743848_SNP [dm3] X_11849815_SNP [dm6]	T	C	4.486e^-4	0.991	EXON CR45619
2R	9610022	2R_9610022_INS [dm3] 2R_13722517_INS [dm6]	A	AA	4.492e^-4	0.991	INTRON fas
2R	12174586	2R_12174586_SNP [dm3] 2R_16287081_SNP [dm6]	A	T	4.493e^-4	0.991	SYNONYMOUS_CODING CG9068 UPSTREAM CR43728 DOWNSTREAM CG30324
2L	20951936	2L_20951936_DEL [dm3] 2L_20951936_DEL [dm6]	AAATT	A	4.495e^-4	0.991	INTERGENIC
3L	4181471	3L_4181471_SNP [dm3] 3L_4181471_SNP [dm6]	G	C	4.497e^-4	0.991	INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	21307094	2L_21307094_SNP [dm3] 2L_21307094_SNP [dm6]	G	A	4.504e^-4	0.991	INTRON Mio	transposable element FlyBase
3L	5197722	3L_5197722_SNP [dm3] 3L_5204622_SNP [dm6]	G	A	4.506e^-4	0.991	INTRON shep
3R	6576117	3R_6576117_SNP [dm3] 3R_10750395_SNP [dm6]	A	T	4.507e^-4	0.991	UTR_5_PRIME TkR86C
3R	6576118	3R_6576118_SNP [dm3] 3R_10750396_SNP [dm6]	G	A	4.507e^-4	0.991	UTR_5_PRIME TkR86C
3R	18160038	3R_18160038_SNP [dm3] 3R_22334316_SNP [dm6]	A	G	4.508e^-4	0.991	UTR_3_PRIME CG5388 UPSTREAM CG5391
X	16792993	X_16792993_SNP [dm3] X_16898960_SNP [dm6]	A	T	4.510e^-4	0.991	INTERGENIC
3L	11849565	3L_11849565_SNP [dm3] 3L_11856465_SNP [dm6]	C	T	4.514e^-4	0.991	INTRON CG44837
3R	14382605	3R_14382605_SNP [dm3] 3R_18556883_SNP [dm6]	A	G	4.519e^-4	0.991	INTERGENIC
3L	9407669	3L_9407669_SNP [dm3] 3L_9414569_SNP [dm6]	A	C	4.520e^-4	0.991	NON_SYNONYMOUS_CODING CG3967 DOWNSTREAM CG3689 & 1 other
3R	20546409	3R_20546409_SNP [dm3] 3R_24720687_SNP [dm6]	T	C	4.520e^-4	0.991	INTRON tok	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11308995	2L_11308995_SNP [dm3] 2L_11308995_SNP [dm6]	A	G	4.524e^-4	0.991	DOWNSTREAM CR43721 INTERGENIC
2R	10628562	2R_10628562_SNP [dm3] 2R_14741057_SNP [dm6]	C	T	4.536e^-4	0.991	UTR_3_PRIME CG12858
2R	16450177	2R_16450177_SNP [dm3] 2R_20562672_SNP [dm6]	G	A	4.543e^-4	0.991	SYNONYMOUS_CODING CG43308 UPSTREAM Mgat1 DOWNSTREAM qsm EXON CR44653	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	12447597	X_12447597_SNP [dm3] X_12553564_SNP [dm6]	A	T	4.550e^-4	0.991	INTRON CG43921 & 1 other
2R	7839427	2R_7839427_SNP [dm3] 2R_11951922_SNP [dm6]	G	A	4.551e^-4	0.991	INTRON CG13188
3L	12024649	3L_12024649_SNP [dm3] 3L_12031549_SNP [dm6]	T	C	4.590e^-4	0.991	INTRON rols
2R	20485065	2R_20485065_SNP [dm3] 2R_24597542_SNP [dm6]	A	G	4.591e^-4	0.991	UTR_3_PRIME pio UPSTREAM CG13587	TF binding site mE1_TFBS_chinmo
3L	11925025	3L_11925025_SNP [dm3] 3L_11931925_SNP [dm6]	A	G	4.592e^-4	0.991	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9159962	3R_9159962_SNP [dm3] 3R_13334240_SNP [dm6]	C	A	4.592e^-4	0.991	UPSTREAM PK2-R2 INTERGENIC
X	11047185	X_11047185_SNP [dm3] X_11153152_SNP [dm6]	C	T	4.594e^-4	0.991	SYNONYMOUS_CODING rtv DOWNSTREAM Lint-1	TF binding site BDTNP1_TFBS_dl
3L	8682902	3L_8682902_SNP [dm3] 3L_8689802_SNP [dm6]	C	T	4.628e^-4	0.991	INTERGENIC
2L	4394983	2L_4394983_SNP [dm3] 2L_4394983_SNP [dm6]	A	C	4.633e^-4	0.991	SYNONYMOUS_CODING l_2_k05819	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	9207483	3L_9207483_SNP [dm3] 3L_9214383_SNP [dm6]	G	A	4.638e^-4	0.991	SYNONYMOUS_CODING CG4476
3L	18311277	3L_18311277_SNP [dm3] 3L_18318177_SNP [dm6]	T	A	4.645e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26037120	3R_26037120_INS [dm3] 3R_30211398_INS [dm6]	G	GATTAATTTGTAGTTTTCG...	4.645e^-4	0.991	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
3L	9993425	3L_9993425_SNP [dm3] 3L_10000325_SNP [dm6]	C	T	4.647e^-4	0.991	INTRON dpr6
3R	11109450	3R_11109450_SNP [dm3] 3R_15283728_SNP [dm6]	A	T	4.663e^-4	0.991	INTRON Tm1
2L	1646576	2L_1646576_SNP [dm3] 2L_1646576_SNP [dm6]	G	A	4.685e^-4	0.991	DOWNSTREAM CR45695 INTERGENIC
X	12824525	X_12824525_INS [dm3] X_12930492_INS [dm6]	A	AA	4.691e^-4	0.991	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18149337	3R_18149337_DEL [dm3] 3R_22323615_DEL [dm6]	TAACATCAAACAACAA...	T	4.700e^-4	0.991	INTRON CG34377
3L	5693504	3L_5693504_SNP [dm3] 3L_5700404_SNP [dm6]	A	G	4.700e^-4	0.991	INTRON sif
X	12820951	X_12820951_SNP [dm3] X_12926918_SNP [dm6]	G	T	4.701e^-4	0.991	INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12094184	2R_12094184_SNP [dm3] 2R_16206679_SNP [dm6]	C	T	4.710e^-4	0.991	UPSTREAM mrj DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10016420	3L_10016420_SNP [dm3] 3L_10023320_SNP [dm6]	T	G	4.716e^-4	0.991	INTRON dpr6
3L	12357296	3L_12357296_DEL [dm3] 3L_12364196_DEL [dm6]	GGACAC	G	4.718e^-4	0.991	INTERGENIC
3L	12357323	3L_12357323_SNP [dm3] 3L_12364223_SNP [dm6]	G	T	4.718e^-4	0.991	INTERGENIC
3L	12357338	3L_12357338_SNP [dm3] 3L_12364238_SNP [dm6]	A	T	4.718e^-4	0.991	INTERGENIC
3L	8046087	3L_8046087_SNP [dm3] 3L_8052987_SNP [dm6]	A	T	4.720e^-4	0.991	UTR_3_PRIME nmo DOWNSTREAM nmo
2L	17780442	2L_17780442_SNP [dm3] 2L_17780442_SNP [dm6]	G	T	4.731e^-4	0.991	INTERGENIC
2L	1319209	2L_1319209_SNP [dm3] 2L_1319209_SNP [dm6]	T	C	4.733e^-4	0.991	INTERGENIC
2L	8357937	2L_8357937_SNP [dm3] 2L_8357937_SNP [dm6]	A	T	4.737e^-4	0.991	SPLICE_SITE_REGION CG7627 INTRON CG7627
2L	13747184	2L_13747184_SNP [dm3] 2L_13747184_SNP [dm6]	A	G	4.758e^-4	0.991	DOWNSTREAM mir-1002 & 1 other INTRON CR44846 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	10666318	2R_10666318_SNP [dm3] 2R_14778813_SNP [dm6]	T	G	4.761e^-4	0.991	INTRON kn	regulatory region REDfly_CRMs
3L	6568599	3L_6568599_SNP [dm3] 3L_6575499_SNP [dm6]	C	T	4.761e^-4	0.991	INTRON CG18769 & 1 other
3L	21156111	3L_21156111_SNP [dm3] 3L_21163011_SNP [dm6]	A	G	4.769e^-4	0.991	INTRON Ac78C
3R	9538192	3R_9538192_INS [dm3] 3R_13712470_INS [dm6]	G	GGCATATAAGATATATTAAG...	4.771e^-4	0.991	UPSTREAM primo-2 & 1 other EXON CR34044	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9472306	2L_9472306_SNP [dm3] 2L_9472306_SNP [dm6]	G	A	4.776e^-4	0.991	INTERGENIC
2R	9663209	2R_9663209_SNP [dm3] 2R_13775704_SNP [dm6]	G	C	4.785e^-4	0.991	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11350931	3L_11350931_SNP [dm3] 3L_11357831_SNP [dm6]	G	A	4.788e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6642513	2R_6642513_SNP [dm3] 2R_10755008_SNP [dm6]	G	C	4.809e^-4	0.991	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_chinmo
2L	5412928	2L_5412928_SNP [dm3] 2L_5412928_SNP [dm6]	T	A	4.813e^-4	0.991	INTRON H15	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26523754	3R_26523754_SNP [dm3] 3R_30698032_SNP [dm6]	C	T	4.821e^-4	0.991	UPSTREAM Pka-C2 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15342524	3L_15342524_SNP [dm3] 3L_15349424_SNP [dm6]	C	T	4.822e^-4	0.991	INTERGENIC
3L	14446068	3L_14446068_SNP [dm3] 3L_14452968_SNP [dm6]	T	G	4.826e^-4	0.991	INTRON bbg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	14727219	X_14727219_INS [dm3] X_14833186_INS [dm6]	C	CAC	4.830e^-4	0.991	UTR_5_PRIME CG14411	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_disco mE1_TFBS_HSA
3R	15177419	3R_15177419_SNP [dm3] 3R_19351697_SNP [dm6]	C	A	4.834e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	9049307	3R_9049307_SNP [dm3] 3R_13223585_SNP [dm6]	A	C	4.838e^-4	0.991	INTRON Ace
X	21428155	X_21428155_SNP [dm3] X_21557128_SNP [dm6]	A	G	4.855e^-4	0.991	INTERGENIC
3R	20383666	3R_20383666_SNP [dm3] 3R_24557944_SNP [dm6]	T	C	4.861e^-4	0.991	UTR_3_PRIME CG13624 DOWNSTREAM snRNA:U6:96Ac
2L	6870554	2L_6870554_SNP [dm3] 2L_6870554_SNP [dm6]	C	T	4.861e^-4	0.991	UPSTREAM Nha1 DOWNSTREAM CR44915 INTERGENIC
2R	16960337	2R_16960337_SNP [dm3] 2R_21072832_SNP [dm6]	C	G	4.868e^-4	0.991	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16960381	2R_16960381_SNP [dm3] 2R_21072876_SNP [dm6]	C	T	4.868e^-4	0.991	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16960522	2R_16960522_SNP [dm3] 2R_21073017_SNP [dm6]	A	T	4.868e^-4	0.991	UPSTREAM CG10527 INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960540	2R_16960540_SNP [dm3] 2R_21073035_SNP [dm6]	G	A	4.868e^-4	0.991	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16960593	2R_16960593_SNP [dm3] 2R_21073088_SNP [dm6]	C	A	4.868e^-4	0.991	UPSTREAM CG10527 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2R	16963181	2R_16963181_SNP [dm3] 2R_21075676_SNP [dm6]	A	C	4.868e^-4	0.991	UTR_5_PRIME Treh UPSTREAM Treh INTRON Treh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9154780	2L_9154780_DEL [dm3] 2L_9154780_DEL [dm6]	AG	A	4.872e^-4	0.991	INTRON CG32982
3R	26036620	3R_26036620_SNP [dm3] 3R_30210898_SNP [dm6]	A	T	4.873e^-4	0.991	UTR_5_PRIME CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp	regulatory region REDfly_CRMs
3R	26036914	3R_26036914_SNP [dm3] 3R_30211192_SNP [dm6]	C	A	4.873e^-4	0.991	SYNONYMOUS_CODING CecA1 UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM Anp
3L	9612073	3L_9612073_SNP [dm3] 3L_9618973_SNP [dm6]	T	C	4.878e^-4	0.991	INTRON LanB2	TF binding site mE1_TFBS_cad
3L	4944798	3L_4944798_SNP [dm3] 3L_4944798_SNP [dm6]	G	A	4.880e^-4	0.991	INTRON Con
2L	3441864	2L_3441864_SNP [dm3] 2L_3441864_SNP [dm6]	A	G	4.889e^-4	0.991	INTERGENIC
3R	14369267	3R_14369267_SNP [dm3] 3R_18543545_SNP [dm6]	T	A	4.903e^-4	0.991	INTRON fru
3L	15113022	3L_15113022_SNP [dm3] 3L_15119922_SNP [dm6]	C	T	4.903e^-4	0.991	UTR_3_PRIME CG16959 INTRON Cep135
2L	11774646	2L_11774646_SNP [dm3] 2L_11774646_SNP [dm6]	G	A	4.914e^-4	0.991	INTERGENIC
2R	9426012	2R_9426012_SNP [dm3] 2R_13538507_SNP [dm6]	T	G	4.914e^-4	0.991	NON_SYNONYMOUS_CODING CG6145	TF binding site mE1_TFBS_cad
X	3980133	X_3980133_SNP [dm3] X_4086100_SNP [dm6]	T	C	4.914e^-4	0.991	INTRON CG43689
2R	8314573	2R_8314573_SNP [dm3] 2R_12427068_SNP [dm6]	G	A	4.915e^-4	0.991	SYNONYMOUS_CODING CG13154 DOWNSTREAM CG8525	TF binding site mE1_TFBS_chinmo
2L	15370882	2L_15370882_SNP [dm3] 2L_15370882_SNP [dm6]	C	G	4.915e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	11110617	3R_11110617_SNP [dm3] 3R_15284895_SNP [dm6]	A	G	4.919e^-4	0.991	INTRON Tm1
2R	1435442	2R_1435442_SNP [dm3] 2R_5547937_SNP [dm6]	T	C	4.928e^-4	0.991	INTRON CG30438	TF binding site mE1_TFBS_sens
2R	17462415	2R_17462415_SNP [dm3] 2R_21574910_SNP [dm6]	T	A	4.934e^-4	0.991	INTRON CG10440
3L	7420959	3L_7420959_SNP [dm3] 3L_7427859_SNP [dm6]	C	G	4.940e^-4	0.991	INTRON CG42458
3L	14016130	3L_14016130_SNP [dm3] 3L_14023030_SNP [dm6]	G	T	4.947e^-4	0.991	SYNONYMOUS_CODING ptip
3R	9532811	3R_9532811_SNP [dm3] 3R_13707089_SNP [dm6]	T	A	4.950e^-4	0.991	INTRON Adgf-C
3L	10766321	3L_10766321_SNP [dm3] 3L_10773221_SNP [dm6]	G	A	4.952e^-4	0.991	UTR_3_PRIME CG43245
3R	12867674	3R_12867674_DEL [dm3] 3R_17041952_DEL [dm6]	TT	T	4.952e^-4	0.991	UTR_3_PRIME CG3995 DOWNSTREAM CG5220
X	5547602	X_5547602_SNP [dm3] X_5653569_SNP [dm6]	G	A	4.954e^-4	0.991	SYNONYMOUS_CODING CG42265 UTR_3_PRIME CG42265	TF binding site mE1_TFBS_chinmo
X	5547782	X_5547782_SNP [dm3] X_5653749_SNP [dm6]	A	C	4.954e^-4	0.991	SYNONYMOUS_CODING CG42265 UTR_3_PRIME CG42265	TF binding site mE1_TFBS_chinmo
X	5549519	X_5549519_SNP [dm3] X_5655486_SNP [dm6]	A	C	4.954e^-4	0.991	INTRON CG42265
2L	13251412	2L_13251412_SNP [dm3] 2L_13251412_SNP [dm6]	T	C	4.962e^-4	0.991	UPSTREAM CG31728 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1312662	2L_1312662_SNP [dm3] 2L_1312662_SNP [dm6]	G	T	4.966e^-4	0.991	INTERGENIC
2L	17807750	2L_17807750_SNP [dm3] 2L_17807750_SNP [dm6]	C	T	4.980e^-4	0.991	INTRON CadN2
2L	2841938	2L_2841938_SNP [dm3] 2L_2841938_SNP [dm6]	T	C	4.981e^-4	0.991	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	2841965	2L_2841965_SNP [dm3] 2L_2841965_SNP [dm6]	T	A	4.981e^-4	0.991	SYNONYMOUS_CODING CG2975 DOWNSTREAM CG18558
2L	3089899	2L_3089899_SNP [dm3] 2L_3089899_SNP [dm6]	T	C	4.981e^-4	0.991	SYNONYMOUS_CODING toc INTRON toc	TF binding site mE1_TFBS_HSA
3L	2578095	3L_2578095_SNP [dm3] 3L_2578095_SNP [dm6]	G	A	4.982e^-4	0.991	INTRON msn
3R	9536881	3R_9536881_SNP [dm3] 3R_13711159_SNP [dm6]	G	T	4.999e^-4	0.991	UPSTREAM primo-1 INTRON primo-2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6278384	2R_6278384_SNP [dm3] 2R_10390879_SNP [dm6]	C	T	5.007e^-4	0.991	INTRON CG42732
2L	12328687	2L_12328687_SNP [dm3] 2L_12328687_SNP [dm6]	C	T	5.013e^-4	0.991	INTERGENIC
3L	3922184	3L_3922184_SNP [dm3] 3L_3922184_SNP [dm6]	G	T	5.015e^-4	0.991	INTRON Eip63F-1
3L	5326434	3L_5326434_SNP [dm3] 3L_5333334_SNP [dm6]	T	A	5.032e^-4	0.991	INTERGENIC
3L	8575264	3L_8575264_SNP [dm3] 3L_8582164_SNP [dm6]	C	T	5.038e^-4	0.991	INTRON CG43078
2L	15204047	2L_15204047_SNP [dm3] 2L_15204047_SNP [dm6]	A	G	5.042e^-4	0.991	DOWNSTREAM CR43357 INTERGENIC
3L	17002745	3L_17002745_SNP [dm3] 3L_17009645_SNP [dm6]	C	T	5.051e^-4	0.991	INTRON CG3764	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14947009	3R_14947009_SNP [dm3] 3R_19121287_SNP [dm6]	G	A	5.056e^-4	0.991	INTRON CG6040
2L	15962239	2L_15962239_SNP [dm3] 2L_15962239_SNP [dm6]	G	A	5.061e^-4	0.991	UTR_5_PRIME beat-Ib
3L	8717145	3L_8717145_SNP [dm3] 3L_8724045_SNP [dm6]	T	C	5.076e^-4	0.991	SYNONYMOUS_CODING CG6511
3L	11925082	3L_11925082_SNP [dm3] 3L_11931982_SNP [dm6]	T	G	5.089e^-4	0.991	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6350644	3R_6350644_SNP [dm3] 3R_10524922_SNP [dm6]	A	C	5.097e^-4	0.991	INTRON hth
2R	6859970	2R_6859970_SNP [dm3] 2R_10972465_SNP [dm6]	T	A	5.108e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
3L	14111200	3L_14111200_SNP [dm3] 3L_14118100_SNP [dm6]	C	A	5.109e^-4	0.991	INTRON Sox21b
3R	22932935	3R_22932935_SNP [dm3] 3R_27107213_SNP [dm6]	C	T	5.121e^-4	0.991	INTERGENIC
3L	6697313	3L_6697313_SNP [dm3] 3L_6704213_SNP [dm6]	A	G	5.122e^-4	0.991	UPSTREAM SP1173 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9278604	3L_9278604_SNP [dm3] 3L_9285504_SNP [dm6]	G	C	5.123e^-4	0.991	SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3L	9278606	3L_9278606_SNP [dm3] 3L_9285506_SNP [dm6]	C	A	5.123e^-4	0.991	NON_SYNONYMOUS_CODING GluRIB UTR_3_PRIME GluRIB
3L	9601584	3L_9601584_SNP [dm3] 3L_9608484_SNP [dm6]	T	G	5.130e^-4	0.991	NON_SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	19083044	2R_19083044_SNP [dm3] 2R_23195521_SNP [dm6]	T	C	5.156e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
2L	3863380	2L_3863380_INS [dm3] 2L_3863380_INS [dm6]	A	ACAACTTGCATTTGAA...	5.157e^-4	0.991	INTRON CG3964	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3R	16233328	3R_16233328_SNP [dm3] 3R_20407606_SNP [dm6]	G	A	5.171e^-4	0.991	UPSTREAM CG10881 INTRON Gfrl & 1 other
3R	26036643	3R_26036643_SNP [dm3] 3R_30210921_SNP [dm6]	C	T	5.176e^-4	0.991	UTR_5_PRIME CecA1 UPSTREAM Cec-Psi1 DOWNSTREAM Anp	regulatory region REDfly_CRMs
2R	13786333	2R_13786333_SNP [dm3] 2R_17898828_SNP [dm6]	C	T	5.189e^-4	0.991	INTRON Elk	TF binding site BDTNP1_TFBS_twi
3R	3392445	3R_3392445_SNP [dm3] 3R_7566723_SNP [dm6]	C	A	5.190e^-4	0.991	INTERGENIC
X	19516898	X_19516898_SNP [dm3] X_19622865_SNP [dm6]	A	T	5.194e^-4	0.991	UPSTREAM MKP-4 INTRON NAA20	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10019417	3L_10019417_SNP [dm3] 3L_10026317_SNP [dm6]	G	T	5.199e^-4	0.991	INTRON dpr6
2L	1046236	2L_1046236_SNP [dm3] 2L_1046236_SNP [dm6]	C	T	5.208e^-4	0.991	INTRON IA-2
2L	1046242	2L_1046242_SNP [dm3] 2L_1046242_SNP [dm6]	T	C	5.208e^-4	0.991	INTRON IA-2
2L	1046246	2L_1046246_SNP [dm3] 2L_1046246_SNP [dm6]	G	T	5.208e^-4	0.991	INTRON IA-2
2L	1046256	2L_1046256_SNP [dm3] 2L_1046256_SNP [dm6]	C	T	5.208e^-4	0.991	INTRON IA-2
2R	5326433	2R_5326433_SNP [dm3] 2R_9438928_SNP [dm6]	A	T	5.231e^-4	0.991	INTRON ced-6
3R	23488381	3R_23488381_SNP [dm3] 3R_27662659_SNP [dm6]	T	C	5.234e^-4	0.991	INTRON unc80	TF binding site mE1_TFBS_inv
2L	19095347	2L_19095347_SNP [dm3] 2L_19095347_SNP [dm6]	G	T	5.236e^-4	0.991	INTRON Lim3	TF binding site mE1_TFBS_cad
2R	17775010	2R_17775010_SNP [dm3] 2R_21887505_SNP [dm6]	C	T	5.236e^-4	0.991	INTRON Fili
2R	12388026	2R_12388026_SNP [dm3] 2R_16500521_SNP [dm6]	C	A	5.255e^-4	0.991	UTR_5_PRIME Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	16229992	2R_16229992_SNP [dm3] 2R_20342487_SNP [dm6]	T	C	5.258e^-4	0.991	INTRON CG16739
2R	16043945	2R_16043945_SNP [dm3] 2R_20156440_SNP [dm6]	G	A	5.288e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	10005389	3L_10005389_INS [dm3] 3L_10012289_INS [dm6]	A	ACA	5.296e^-4	0.991	INTRON dpr6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11448825	2R_11448825_SNP [dm3] 2R_15561320_SNP [dm6]	C	A	5.297e^-4	0.991	INTRON CG12963
X	16580399	X_16580399_SNP [dm3] X_16686366_SNP [dm6]	G	A	5.302e^-4	0.991	SYNONYMOUS_CODING Sep4
3L	467557	3L_467557_SNP [dm3] 3L_467557_SNP [dm6]	T	C	5.304e^-4	0.991	INTRON klar
3L	468500	3L_468500_INS [dm3] 3L_468500_INS [dm6]	T	CG	5.304e^-4	0.991	INTRON klar
3R	6010054	3R_6010054_SNP [dm3] 3R_10184332_SNP [dm6]	C	T	5.304e^-4	0.991	INTRON CG12814	TF binding site mE1_TFBS_cad
X	11123801	X_11123801_SNP [dm3] X_11229768_SNP [dm6]	G	A	5.307e^-4	0.991	INTRON CG44422
X	14884147	X_14884147_SNP [dm3] X_14990114_SNP [dm6]	T	C	5.308e^-4	0.991	INTRON eag
X	21335251	X_21335251_SNP [dm3] X_21464224_SNP [dm6]	G	A	5.320e^-4	0.991	INTERGENIC
2L	5423367	2L_5423367_SNP [dm3] 2L_5423367_SNP [dm6]	G	A	5.321e^-4	0.991	INTERGENIC
2R	13774631	2R_13774631_SNP [dm3] 2R_17887126_SNP [dm6]	T	A	5.324e^-4	0.991	DOWNSTREAM PPO1 INTRON Elk	regulatory region REDfly_CRMs
3L	3591604	3L_3591604_SNP [dm3] 3L_3591604_SNP [dm6]	A	G	5.331e^-4	0.991	INTRON Eip63E
3L	6527014	3L_6527014_SNP [dm3] 3L_6533914_SNP [dm6]	A	C	5.333e^-4	0.991	INTRON sfl
2R	16665531	2R_16665531_INS [dm3] 2R_20778026_INS [dm6]	G	GTTTAG	5.344e^-4	0.991	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3L	8525296	3L_8525296_SNP [dm3] 3L_8532196_SNP [dm6]	A	T	5.354e^-4	0.991	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	21867580	2L_21867580_SNP [dm3] 2L_21867580_SNP [dm6]	G	C	5.360e^-4	0.991	INTRON CR44917 EXON CR44919 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	15370151	3R_15370151_SNP [dm3] 3R_19544429_SNP [dm6]	T	A	5.365e^-4	0.991	INTRON Dys
3L	10075006	3L_10075006_SNP [dm3] 3L_10081906_SNP [dm6]	C	T	5.366e^-4	0.991	INTRON dpr6
2R	16951893	2R_16951893_SNP [dm3] 2R_21064388_SNP [dm6]	A	G	5.379e^-4	0.991	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
2R	19183857	2R_19183857_INS [dm3] 2R_23296334_INS [dm6]	A	ATGGTGAAAA	5.384e^-4	0.991	INTERGENIC
2L	13881912	2L_13881912_SNP [dm3] 2L_13881912_SNP [dm6]	A	G	5.387e^-4	0.991	INTRON CenG1A
3R	8986766	3R_8986766_SNP [dm3] 3R_13161044_SNP [dm6]	T	A	5.398e^-4	0.991	INTRON timeout
2L	7073473	2L_7073473_SNP [dm3] 2L_7073473_SNP [dm6]	T	C	5.400e^-4	0.991	INTRON Pvf2
3L	13101339	3L_13101339_SNP [dm3] 3L_13108239_SNP [dm6]	C	A	5.401e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
3L	4395006	3L_4395006_SNP [dm3] 3L_4395006_SNP [dm6]	C	A	5.410e^-4	0.991	INTRON slow
3L	4395007	3L_4395007_SNP [dm3] 3L_4395007_SNP [dm6]	G	A	5.410e^-4	0.991	INTRON slow
X	12447569	X_12447569_SNP [dm3] X_12553536_SNP [dm6]	C	T	5.414e^-4	0.991	INTRON CG43921 & 1 other
X	14882486	X_14882486_SNP [dm3] X_14988453_SNP [dm6]	T	A	5.415e^-4	0.991	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
3L	1629594	3L_1629594_SNP [dm3] 3L_1629594_SNP [dm6]	T	A	5.419e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13884779	2L_13884779_SNP [dm3] 2L_13884779_SNP [dm6]	T	A	5.421e^-4	0.991	INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16960976	2R_16960976_SNP [dm3] 2R_21073471_SNP [dm6]	A	T	5.425e^-4	0.991	UPSTREAM CG10527 & 1 other INTERGENIC
2L	1436353	2L_1436353_SNP [dm3] 2L_1436353_SNP [dm6]	G	T	5.429e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7929821	X_7929821_SNP [dm3] X_8035788_SNP [dm6]	A	C	5.432e^-4	0.991	UTR_3_PRIME CG2233
2R	19086277	2R_19086277_MNP [dm3] 2R_23198754_MNP [dm6]	GTA	TCC	5.437e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19086283	2R_19086283_SNP [dm3] 2R_23198760_SNP [dm6]	T	A	5.437e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19086284	2R_19086284_SNP [dm3] 2R_23198761_SNP [dm6]	T	A	5.437e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19086285	2R_19086285_INS [dm3] 2R_23198762_INS [dm6]	G	GCACGAACTA	5.437e^-4	0.991	INTRON CG34371	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18335322	3L_18335322_SNP [dm3] 3L_18342222_SNP [dm6]	C	T	5.448e^-4	0.991	INTERGENIC
2L	14233729	2L_14233729_SNP [dm3] 2L_14233729_SNP [dm6]	G	C	5.451e^-4	0.991	UTR_5_PRIME Dyrk2 INTRON Dyrk2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18495426	3L_18495426_SNP [dm3] 3L_18502326_SNP [dm6]	G	A	5.452e^-4	0.991	UTR_5_PRIME AstC-R2
3L	2565896	3L_2565896_SNP [dm3] 3L_2565896_SNP [dm6]	A	T	5.459e^-4	0.991	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4178957	3L_4178957_SNP [dm3] 3L_4178957_SNP [dm6]	T	C	5.467e^-4	0.991	UPSTREAM Teh4 DOWNSTREAM Teh2 INTRON CG18675
3L	1629316	3L_1629316_SNP [dm3] 3L_1629316_SNP [dm6]	C	T	5.468e^-4	0.991	UPSTREAM CG13928 & 1 other INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629549	3L_1629549_SNP [dm3] 3L_1629549_SNP [dm6]	C	T	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629564	3L_1629564_SNP [dm3] 3L_1629564_SNP [dm6]	C	T	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629567	3L_1629567_SNP [dm3] 3L_1629567_SNP [dm6]	A	T	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629606	3L_1629606_SNP [dm3] 3L_1629606_SNP [dm6]	A	G	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629641	3L_1629641_SNP [dm3] 3L_1629641_SNP [dm6]	G	T	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1629656	3L_1629656_SNP [dm3] 3L_1629656_SNP [dm6]	T	A	5.468e^-4	0.991	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1635924	3L_1635924_SNP [dm3] 3L_1635924_SNP [dm6]	G	T	5.468e^-4	0.991	INTRON nSyb	TF binding site mE1_TFBS_HSA
2R	13837709	2R_13837709_SNP [dm3] 2R_17950204_SNP [dm6]	T	C	5.469e^-4	0.991	INTERGENIC
3L	7929335	3L_7929335_SNP [dm3] 3L_7936235_SNP [dm6]	T	G	5.471e^-4	0.991	UPSTREAM Srp9 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	2610918	2L_2610918_SNP [dm3] 2L_2610918_SNP [dm6]	C	G	5.478e^-4	0.991	SYNONYMOUS_CODING CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	7351718	2L_7351718_SNP [dm3] 2L_7351718_SNP [dm6]	A	C	5.492e^-4	0.991	INTRON Wnt6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	4184845	2L_4184845_SNP [dm3] 2L_4184845_SNP [dm6]	G	A	5.499e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2L	12242987	2L_12242987_SNP [dm3] 2L_12242987_SNP [dm6]	C	A	5.499e^-4	0.991	INTRON aret	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9161012	3R_9161012_INS [dm3] 3R_13335290_INS [dm6]	C	CCTCTTAATCTC...	5.504e^-4	0.991	INTERGENIC
3R	26037174	3R_26037174_SNP [dm3] 3R_30211452_SNP [dm6]	T	C	5.512e^-4	0.991	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
2L	21862445	2L_21862445_SNP [dm3] 2L_21862445_SNP [dm6]	T	G	5.524e^-4	0.991	INTRON CR44917	transposable element FlyBase
3L	7420891	3L_7420891_SNP [dm3] 3L_7427791_SNP [dm6]	G	A	5.532e^-4	0.991	INTRON CG42458
3L	7420892	3L_7420892_SNP [dm3] 3L_7427792_SNP [dm6]	T	C	5.532e^-4	0.991	INTRON CG42458
3L	16968423	3L_16968423_SNP [dm3] 3L_16975323_SNP [dm6]	C	G	5.535e^-4	0.991	INTRON Exn	TF binding site mE1_TFBS_Kr
3R	18102681	3R_18102681_SNP [dm3] 3R_22276959_SNP [dm6]	C	T	5.539e^-4	0.991	INTRON SKIP
3L	4690718	3L_4690718_SNP [dm3] 3L_4690718_SNP [dm6]	G	A	5.542e^-4	0.991	UPSTREAM CG18418 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	7044953	3L_7044953_SNP [dm3] 3L_7051853_SNP [dm6]	T	C	5.583e^-4	0.991	INTRON Mp
2R	2638295	2R_2638295_SNP [dm3] 2R_6750790_SNP [dm6]	C	G	5.588e^-4	0.991	UPSTREAM Eb1 INTRON Eb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2858597	2L_2858597_SNP [dm3] 2L_2858597_SNP [dm6]	A	T	5.589e^-4	0.991	INTRON CG2991	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6575025	2L_6575025_SNP [dm3] 2L_6575025_SNP [dm6]	C	A	5.591e^-4	0.991	NON_SYNONYMOUS_CODING CG11319	TF binding site mE1_TFBS_cad
3R	11468846	3R_11468846_INS [dm3] 3R_15643124_INS [dm6]	T	TATAACTTGGGTGTAT...	5.595e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	13859637	3L_13859637_SNP [dm3] 3L_13866537_SNP [dm6]	C	T	5.606e^-4	0.991	DOWNSTREAM dysc INTRON CG8745	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7708241	3L_7708241_SNP [dm3] 3L_7715141_SNP [dm6]	C	T	5.609e^-4	0.991	INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13519584	3R_13519584_SNP [dm3] 3R_17693862_SNP [dm6]	G	A	5.611e^-4	0.991	SYNONYMOUS_CODING osa	TF binding site mE1_TFBS_cad
3L	5695825	3L_5695825_SNP [dm3] 3L_5702725_SNP [dm6]	T	G	5.612e^-4	0.991	INTRON sif
2L	5562172	2L_5562172_SNP [dm3] 2L_5562172_SNP [dm6]	C	A	5.643e^-4	0.991	SYNONYMOUS_CODING GluRIIB	TF binding site mE1_TFBS_cad
X	16774262	X_16774262_SNP [dm3] X_16880229_SNP [dm6]	A	G	5.644e^-4	0.991	INTERGENIC
X	16774396	X_16774396_SNP [dm3] X_16880363_SNP [dm6]	G	A	5.644e^-4	0.991	UPSTREAM CG4872 INTERGENIC
X	2758062	X_2758062_SNP [dm3] X_2864029_SNP [dm6]	G	T	5.658e^-4	0.991	INTRON kirre
2L	2387900	2L_2387900_SNP [dm3] 2L_2387900_SNP [dm6]	T	G	5.661e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18495425	3L_18495425_SNP [dm3] 3L_18502325_SNP [dm6]	G	A	5.689e^-4	0.991	UTR_5_PRIME AstC-R2
3L	18497120	3L_18497120_SNP [dm3] 3L_18504020_SNP [dm6]	A	G	5.689e^-4	0.991	INTERGENIC
2R	2597558	2R_2597558_DEL [dm3] 2R_6710053_DEL [dm6]	AA	A	5.691e^-4	0.991	INTRON CG3409 & 1 other
X	12834703	X_12834703_SNP [dm3] X_12940670_SNP [dm6]	T	C	5.695e^-4	0.991	UPSTREAM fne INTRON fne	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	10029833	2R_10029833_SNP [dm3] 2R_14142328_SNP [dm6]	C	G	5.701e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_ttk
2L	13742375	2L_13742375_SNP [dm3] 2L_13742375_SNP [dm6]	T	A	5.707e^-4	0.991	INTERGENIC
3L	9608146	3L_9608146_SNP [dm3] 3L_9615046_SNP [dm6]	T	C	5.731e^-4	0.991	UPSTREAM LanB2 INTRON LanB2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2566068	3L_2566068_SNP [dm3] 3L_2566068_SNP [dm6]	C	T	5.731e^-4	0.991	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13875937	2L_13875937_SNP [dm3] 2L_13875937_SNP [dm6]	G	A	5.740e^-4	0.991	INTRON CenG1A
X	14884828	X_14884828_SNP [dm3] X_14990795_SNP [dm6]	G	A	5.742e^-4	0.991	INTRON eag
3R	10185720	3R_10185720_SNP [dm3] 3R_14359998_SNP [dm6]	C	G	5.746e^-4	0.991	SYNONYMOUS_CODING CG31320 INTRON NK7.1	TF binding site mE1_TFBS_sens
3L	9598492	3L_9598492_SNP [dm3] 3L_9605392_SNP [dm6]	C	G	5.747e^-4	0.991	SYNONYMOUS_CODING CG3280	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6459012	2L_6459012_SNP [dm3] 2L_6459012_SNP [dm6]	T	G	5.760e^-4	0.991	DOWNSTREAM CG16947 & 1 other INTERGENIC
2L	19562853	2L_19562853_SNP [dm3] 2L_19562853_SNP [dm6]	C	A	5.767e^-4	0.991	INTRON Tep5	TF binding site mE1_TFBS_cnc
X	16771421	X_16771421_SNP [dm3] X_16877388_SNP [dm6]	T	G	5.774e^-4	0.991	UPSTREAM CG13003 INTERGENIC
3R	9031273	3R_9031273_SNP [dm3] 3R_13205551_SNP [dm6]	C	T	5.775e^-4	0.991	INTERGENIC
3R	9031337	3R_9031337_SNP [dm3] 3R_13205615_SNP [dm6]	A	T	5.775e^-4	0.991	INTERGENIC
3R	9031448	3R_9031448_SNP [dm3] 3R_13205726_SNP [dm6]	A	G	5.775e^-4	0.991	INTERGENIC
3R	9031782	3R_9031782_SNP [dm3] 3R_13206060_SNP [dm6]	T	C	5.775e^-4	0.991	INTERGENIC
3R	14116960	3R_14116960_SNP [dm3] 3R_18291238_SNP [dm6]	A	T	5.778e^-4	0.991	SYNONYMOUS_CODING l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23007983	3R_23007983_SNP [dm3] 3R_27182261_SNP [dm6]	T	G	5.778e^-4	0.991	INTRON Ser
2R	6278733	2R_6278733_SNP [dm3] 2R_10391228_SNP [dm6]	C	T	5.782e^-4	0.991	INTRON CG42732
2L	3441866	2L_3441866_SNP [dm3] 2L_3441866_SNP [dm6]	G	T	5.787e^-4	0.991	INTERGENIC
2L	4006409	2L_4006409_SNP [dm3] 2L_4006409_SNP [dm6]	T	C	5.799e^-4	0.991	SYNONYMOUS_CODING CG15423 DOWNSTREAM CG15422
3L	11418802	3L_11418802_SNP [dm3] 3L_11425702_SNP [dm6]	T	A	5.803e^-4	0.991	INTRON CG7560	TF binding site mE1_TFBS_cad
3L	12362848	3L_12362848_SNP [dm3] 3L_12369748_SNP [dm6]	A	T	5.804e^-4	0.991	INTRON Ncc69	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12176105	2L_12176105_SNP [dm3] 2L_12176105_SNP [dm6]	C	T	5.805e^-4	0.991	INTRON aret & 1 other
3R	22438030	3R_22438030_SNP [dm3] 3R_26612308_SNP [dm6]	G	A	5.810e^-4	0.991	INTERGENIC
2L	710357	2L_710357_SNP [dm3] 2L_710357_SNP [dm6]	G	A	5.811e^-4	0.991	UPSTREAM CR44988 INTRON ds
2L	4327100	2L_4327100_SNP [dm3] 2L_4327100_SNP [dm6]	G	A	5.813e^-4	0.991	INTRON CG16857
X	10459390	X_10459390_SNP [dm3] X_10565357_SNP [dm6]	G	A	5.818e^-4	0.991	DOWNSTREAM CG15296 INTRON spri
2R	9662558	2R_9662558_SNP [dm3] 2R_13775053_SNP [dm6]	A	T	5.839e^-4	0.991	SYNONYMOUS_CODING Cpr50Ca
3L	6568637	3L_6568637_SNP [dm3] 3L_6575537_SNP [dm6]	G	A	5.840e^-4	0.991	INTRON CG18769 & 1 other
X	14885234	X_14885234_SNP [dm3] X_14991201_SNP [dm6]	C	A	5.847e^-4	0.991	INTRON eag
X	14885472	X_14885472_SNP [dm3] X_14991439_SNP [dm6]	T	G	5.847e^-4	0.991	INTRON eag
X	16710583	X_16710583_SNP [dm3] X_16816550_SNP [dm6]	T	A	5.858e^-4	0.991	UPSTREAM CG4829 & 1 other INTRON CG4829
2L	18308319	2L_18308319_SNP [dm3] 2L_18308319_SNP [dm6]	A	C	5.888e^-4	0.991	DOWNSTREAM CG43354 EXON CR43353	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6643230	2R_6643230_SNP [dm3] 2R_10755725_SNP [dm6]	T	A	5.892e^-4	0.991	SYNONYMOUS_CODING CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	460459	3L_460459_SNP [dm3] 3L_460459_SNP [dm6]	G	T	5.895e^-4	0.991	INTRON klar
3L	4778055	3L_4778055_SNP [dm3] 3L_4778055_SNP [dm6]	G	A	5.904e^-4	0.991	INTRON RhoGEF64C
3L	16041645	3L_16041645_SNP [dm3] 3L_16048545_SNP [dm6]	C	G	5.906e^-4	0.991	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17734011	2R_17734011_DEL [dm3] 2R_21846506_DEL [dm6]	TG	C	5.914e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	9307025	2L_9307025_SNP [dm3] 2L_9307025_SNP [dm6]	G	A	5.932e^-4	0.991	INTERGENIC
3L	4944808	3L_4944808_SNP [dm3] 3L_4944808_SNP [dm6]	A	G	5.950e^-4	0.991	INTRON Con
2R	5327824	2R_5327824_SNP [dm3] 2R_9440319_SNP [dm6]	T	C	5.953e^-4	0.991	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	5327825	2R_5327825_SNP [dm3] 2R_9440320_SNP [dm6]	A	T	5.953e^-4	0.991	INTRON ced-6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	17303360	3L_17303360_SNP [dm3] 3L_17310260_SNP [dm6]	C	T	5.955e^-4	0.991	INTERGENIC
3L	14478222	3L_14478222_SNP [dm3] 3L_14485122_SNP [dm6]	T	C	5.956e^-4	0.991	INTRON bbg
3L	10674040	3L_10674040_SNP [dm3] 3L_10680940_SNP [dm6]	C	T	5.963e^-4	0.991	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	4844676	3L_4844676_SNP [dm3] 3L_4844676_SNP [dm6]	G	C	5.965e^-4	0.991	INTERGENIC
X	3980128	X_3980128_SNP [dm3] X_4086095_SNP [dm6]	T	G	5.969e^-4	0.991	INTRON CG43689
2R	15767729	2R_15767729_SNP [dm3] 2R_19880224_SNP [dm6]	T	G	5.974e^-4	0.991	SYNONYMOUS_CODING CG13872	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13101333	3L_13101333_SNP [dm3] 3L_13108233_SNP [dm6]	T	A	5.983e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
2L	6258952	2L_6258952_SNP [dm3] 2L_6258952_SNP [dm6]	C	G	5.985e^-4	0.991	INTRON Ddr
2L	5484129	2L_5484129_SNP [dm3] 2L_5484129_SNP [dm6]	A	G	5.987e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5484321	2L_5484321_SNP [dm3] 2L_5484321_SNP [dm6]	G	A	5.987e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	10071573	X_10071573_SNP [dm3] X_10177540_SNP [dm6]	A	C	5.992e^-4	0.991	INTRON CG43902 & 1 other
X	14877561	X_14877561_SNP [dm3] X_14983528_SNP [dm6]	A	G	5.998e^-4	0.991	INTRON eag
3L	10000530	3L_10000530_SNP [dm3] 3L_10007430_SNP [dm6]	G	T	6.005e^-4	0.991	INTRON dpr6
2L	19375514	2L_19375514_SNP [dm3] 2L_19375514_SNP [dm6]	G	A	6.008e^-4	0.991	INTERGENIC
2R	13774475	2R_13774475_SNP [dm3] 2R_17886970_SNP [dm6]	G	A	6.010e^-4	0.991	DOWNSTREAM PPO1 INTRON Elk	regulatory region REDfly_CRMs
2R	13775005	2R_13775005_SNP [dm3] 2R_17887500_SNP [dm6]	T	C	6.010e^-4	0.991	NON_SYNONYMOUS_CODING PPO1 INTRON Elk
2L	11532752	2L_11532752_SNP [dm3] 2L_11532752_SNP [dm6]	T	C	6.010e^-4	0.991	SYNONYMOUS_CODING CG34162 DOWNSTREAM CR42743 EXON CR42743
2R	12388270	2R_12388270_SNP [dm3] 2R_16500765_SNP [dm6]	C	A	6.024e^-4	0.991	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	12388288	2R_12388288_SNP [dm3] 2R_16500783_SNP [dm6]	G	A	6.024e^-4	0.991	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9233306	3L_9233306_SNP [dm3] 3L_9240206_SNP [dm6]	C	A	6.028e^-4	0.991	INTERGENIC
2R	16951884	2R_16951884_SNP [dm3] 2R_21064379_SNP [dm6]	A	G	6.036e^-4	0.991	SYNONYMOUS_CODING Cht12 DOWNSTREAM Cht4
3L	10016462	3L_10016462_SNP [dm3] 3L_10023362_SNP [dm6]	C	G	6.062e^-4	0.991	INTRON dpr6
3L	4910676	3L_4910676_SNP [dm3] 3L_4910676_SNP [dm6]	G	C	6.069e^-4	0.991	UTR_5_PRIME Rh50
2L	4184961	2L_4184961_SNP [dm3] 2L_4184961_SNP [dm6]	T	C	6.082e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2L	10895372	2L_10895372_SNP [dm3] 2L_10895372_SNP [dm6]	C	A	6.082e^-4	0.991	UPSTREAM CR44491 INTERGENIC
2L	4278993	2L_4278993_SNP [dm3] 2L_4278993_SNP [dm6]	G	A	6.103e^-4	0.991	SYNONYMOUS_CODING Art2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9020597	3R_9020597_SNP [dm3] 3R_13194875_SNP [dm6]	T	C	6.108e^-4	0.991	INTERGENIC
3L	18473042	3L_18473042_SNP [dm3] 3L_18479942_SNP [dm6]	G	C	6.109e^-4	0.991	DOWNSTREAM CR44673 INTERGENIC
3L	12357305	3L_12357305_DEL [dm3] 3L_12364205_DEL [dm6]	GATAACAGTT	G	6.113e^-4	0.991	INTERGENIC
2L	6933679	2L_6933679_SNP [dm3] 2L_6933679_SNP [dm6]	G	A	6.135e^-4	0.991	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20701379	X_20701379_SNP [dm3] X_20830352_SNP [dm6]	A	T	6.138e^-4	0.991	INTRON shakB	TF binding site mE1_TFBS_HSA
3L	7925042	3L_7925042_SNP [dm3] 3L_7931942_SNP [dm6]	C	A	6.149e^-4	0.991	INTRON syd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5186968	3L_5186968_SNP [dm3] 3L_5193868_SNP [dm6]	G	A	6.156e^-4	0.991	INTRON shep
2L	6120885	2L_6120885_SNP [dm3] 2L_6120885_SNP [dm6]	G	A	6.158e^-4	0.991	SYNONYMOUS_CODING stai DOWNSTREAM CG31642 INTRON stai
3L	12894403	3L_12894403_INS [dm3] 3L_12901303_INS [dm6]	T	TATAATATTAGTAATTTCAT...	6.159e^-4	0.991	UTR_3_PRIME CG12520
3L	12727797	3L_12727797_SNP [dm3] 3L_12734697_SNP [dm6]	G	A	6.160e^-4	0.991	UPSTREAM Ptp69D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	3467508	2L_3467508_SNP [dm3] 2L_3467508_SNP [dm6]	A	G	6.168e^-4	0.991	UTR_3_PRIME CG3238 DOWNSTREAM Pdsw
3L	8236551	3L_8236551_SNP [dm3] 3L_8243451_SNP [dm6]	G	T	6.175e^-4	0.991	INTRON Dscam4
X	14494958	X_14494958_SNP [dm3] X_14600925_SNP [dm6]	T	A	6.177e^-4	0.991	INTRON CG9413
2R	16960330	2R_16960330_SNP [dm3] 2R_21072825_SNP [dm6]	T	A	6.178e^-4	0.991	UPSTREAM CG10527 DOWNSTREAM CR44704 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16965714	2R_16965714_SNP [dm3] 2R_21078209_SNP [dm6]	C	G	6.178e^-4	0.991	INTRON Treh
2R	19569644	2R_19569644_SNP [dm3] 2R_23682121_SNP [dm6]	C	A	6.180e^-4	0.991	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19569647	2R_19569647_SNP [dm3] 2R_23682124_SNP [dm6]	T	C	6.180e^-4	0.991	SYNONYMOUS_CODING St1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9171986	2L_9171986_SNP [dm3] 2L_9171986_SNP [dm6]	G	A	6.185e^-4	0.991	INTRON tai
2R	4513500	2R_4513500_SNP [dm3] 2R_8625995_SNP [dm6]	T	C	6.222e^-4	0.991	NON_SYNONYMOUS_CODING Vps25 DOWNSTREAM beta3GalTII & 1 other	TF binding site mE1_TFBS_chinmo
X	5547770	X_5547770_SNP [dm3] X_5653737_SNP [dm6]	C	T	6.237e^-4	0.991	SYNONYMOUS_CODING CG42265 UTR_3_PRIME CG42265	TF binding site mE1_TFBS_chinmo
2L	17710932	2L_17710932_SNP [dm3] 2L_17710932_SNP [dm6]	C	T	6.240e^-4	0.991	INTRON CadN	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	2242646	2L_2242646_SNP [dm3] 2L_2242646_SNP [dm6]	T	A	6.242e^-4	0.991	INTRON CG4267	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	4910692	3L_4910692_SNP [dm3] 3L_4910692_SNP [dm6]	C	T	6.253e^-4	0.991	UTR_5_PRIME Rh50
3R	5062860	3R_5062860_DEL [dm3] 3R_9237138_DEL [dm6]	AGA	A	6.260e^-4	0.991	UPSTREAM pum DOWNSTREAM D1 INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	7420849	3L_7420849_SNP [dm3] 3L_7427749_SNP [dm6]	A	T	6.270e^-4	0.991	INTRON CG42458
2R	19564888	2R_19564888_MNP [dm3] 2R_23677365_MNP [dm6]	GGTT	AAAC	6.271e^-4	0.991	INTRON Pde8	TF binding site mE1_TFBS_cad
2R	19564892	2R_19564892_INS [dm3] 2R_23677369_INS [dm6]	C	CC	6.271e^-4	0.991	INTRON Pde8	TF binding site mE1_TFBS_cad
2L	16974492	2L_16974492_SNP [dm3] 2L_16974492_SNP [dm6]	A	C	6.273e^-4	0.991	INTRON beat-IIIb
2R	11690224	2R_11690224_SNP [dm3] 2R_15802719_SNP [dm6]	T	C	6.274e^-4	0.991	INTRON Zasp52 & 1 other
X	2564298	X_2564298_DEL [dm3] X_2670265_DEL [dm6]	AA	A	6.281e^-4	0.991	INTRON sgg
3R	15335395	3R_15335395_SNP [dm3] 3R_19509673_SNP [dm6]	G	A	6.289e^-4	0.991	INTRON Dys
2L	5488790	2L_5488790_SNP [dm3] 2L_5488790_SNP [dm6]	T	C	6.295e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_sbb
2R	17152776	2R_17152776_SNP [dm3] 2R_21265271_SNP [dm6]	A	G	6.304e^-4	0.991	SYNONYMOUS_CODING CG30391 INTRON Rgk3
3R	22397911	3R_22397911_SNP [dm3] 3R_26572189_SNP [dm6]	G	A	6.305e^-4	0.991	INTRON scrib
2R	8620512	2R_8620512_INS [dm3] 2R_12733007_INS [dm6]	T	TGTTACATTTTTTACT...	6.326e^-4	0.991	INTRON CG42663	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9157327	2L_9157327_SNP [dm3] 2L_9157327_SNP [dm6]	A	G	6.328e^-4	0.991	INTRON CG32982
2R	16184848	2R_16184848_SNP [dm3] 2R_20297343_SNP [dm6]	C	A	6.341e^-4	0.991	INTERGENIC
2L	5494079	2L_5494079_SNP [dm3] 2L_5494079_SNP [dm6]	A	C	6.350e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14887161	X_14887161_SNP [dm3] X_14993128_SNP [dm6]	C	T	6.351e^-4	0.991	INTRON eag	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15049616	3R_15049616_SNP [dm3] 3R_19223894_SNP [dm6]	A	G	6.351e^-4	0.991	INTRON vib
3L	12167806	3L_12167806_SNP [dm3] 3L_12174706_SNP [dm6]	A	C	6.353e^-4	0.991	INTRON Rh7
3R	12910095	3R_12910095_SNP [dm3] 3R_17084373_SNP [dm6]	C	T	6.364e^-4	0.991	SYNONYMOUS_CODING kuk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17949109	X_17949109_DEL [dm3] X_18055076_DEL [dm6]	TAT	T	6.364e^-4	0.991	INTRON Sh
3L	10671308	3L_10671308_SNP [dm3] 3L_10678208_SNP [dm6]	C	A	6.369e^-4	0.991	INTRON simj	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	10672725	3L_10672725_SNP [dm3] 3L_10679625_SNP [dm6]	A	G	6.369e^-4	0.991	INTRON simj	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	9646070	2L_9646070_SNP [dm3] 2L_9646070_SNP [dm6]	T	C	6.370e^-4	0.991	SYNONYMOUS_CODING Apoltp
2L	4184486	2L_4184486_SNP [dm3] 2L_4184486_SNP [dm6]	A	G	6.382e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2L	4184497	2L_4184497_SNP [dm3] 2L_4184497_SNP [dm6]	A	T	6.382e^-4	0.991	UPSTREAM CR44057 INTERGENIC
3L	8682488	3L_8682488_SNP [dm3] 3L_8689388_SNP [dm6]	G	A	6.394e^-4	0.991	INTERGENIC
3L	14220822	3L_14220822_SNP [dm3] 3L_14227722_SNP [dm6]	T	C	6.395e^-4	0.991	INTRON nuf	TF binding site BDTNP1_TFBS_sna
3R	9536127	3R_9536127_SNP [dm3] 3R_13710405_SNP [dm6]	T	A	6.396e^-4	0.991	SYNONYMOUS_CODING primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15160195	X_15160195_SNP [dm3] X_15266162_SNP [dm6]	C	T	6.405e^-4	0.991	INTERGENIC
2L	9672003	2L_9672003_SNP [dm3] 2L_9672003_SNP [dm6]	A	G	6.405e^-4	0.991	UPSTREAM CR44150 INTERGENIC
3R	6864582	3R_6864582_SNP [dm3] 3R_11038860_SNP [dm6]	A	T	6.409e^-4	0.991	INTRON CG34114	TF binding site mE1_TFBS_inv
2L	4178716	2L_4178716_SNP [dm3] 2L_4178716_SNP [dm6]	G	A	6.419e^-4	0.991	INTERGENIC
3R	7649424	3R_7649424_SNP [dm3] 3R_11823702_SNP [dm6]	A	C	6.420e^-4	0.991	SYNONYMOUS_CODING CG6959	TF binding site mE1_TFBS_cad
3R	3036474	3R_3036474_SNP [dm3] 3R_7210752_SNP [dm6]	G	T	6.430e^-4	0.991	INTERGENIC
3L	18475721	3L_18475721_SNP [dm3] 3L_18482621_SNP [dm6]	A	T	6.434e^-4	0.991	INTERGENIC
3L	18475852	3L_18475852_SNP [dm3] 3L_18482752_SNP [dm6]	G	A	6.434e^-4	0.991	INTERGENIC
3L	18475857	3L_18475857_SNP [dm3] 3L_18482757_SNP [dm6]	A	C	6.434e^-4	0.991	INTERGENIC
3L	10260100	3L_10260100_SNP [dm3] 3L_10267000_SNP [dm6]	A	T	6.436e^-4	0.991	INTRON can
3L	14016983	3L_14016983_SNP [dm3] 3L_14023883_SNP [dm6]	C	T	6.453e^-4	0.991	SYNONYMOUS_CODING ptip	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2500183	3L_2500183_SNP [dm3] 3L_2500183_SNP [dm6]	T	G	6.454e^-4	0.991	SYNONYMOUS_CODING CG16758 DOWNSTREAM CG45186	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11132761	3L_11132761_SNP [dm3] 3L_11139661_SNP [dm6]	A	C	6.454e^-4	0.991	INTRON CG32082
X	17947930	X_17947930_SNP [dm3] X_18053897_SNP [dm6]	G	A	6.455e^-4	0.991	INTRON Sh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10766690	3L_10766690_DEL [dm3] 3L_10773590_DEL [dm6]	GATTTTA	CAGC	6.468e^-4	0.991	DOWNSTREAM CG43245 INTERGENIC
2L	9857580	2L_9857580_SNP [dm3] 2L_9857580_SNP [dm6]	G	A	6.475e^-4	0.991	INTRON nAChRalpha6
X	5930167	X_5930167_SNP [dm3] X_6036134_SNP [dm6]	C	T	6.477e^-4	0.991	SYNONYMOUS_CODING rux	TF binding site mE1_TFBS_bab1 mE1_TFBS_sens
2R	6278377	2R_6278377_SNP [dm3] 2R_10390872_SNP [dm6]	G	T	6.499e^-4	0.991	INTRON CG42732
2L	2242588	2L_2242588_SNP [dm3] 2L_2242588_SNP [dm6]	T	C	6.500e^-4	0.991	NON_SYNONYMOUS_CODING CG4267	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	3213834	X_3213834_SNP [dm3] X_3319801_SNP [dm6]	G	A	6.501e^-4	0.991	INTRON dnc & 1 other
3L	800338	3L_800338_SNP [dm3] 3L_800338_SNP [dm6]	A	G	6.509e^-4	0.991	INTERGENIC
X	18379065	X_18379065_SNP [dm3] X_18485032_SNP [dm6]	T	C	6.514e^-4	0.991	INTRON psh	TF binding site mE1_TFBS_sens
2R	13623220	2R_13623220_SNP [dm3] 2R_17735715_SNP [dm6]	T	C	6.520e^-4	0.991	SYNONYMOUS_CODING CG6406	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12795407	X_12795407_SNP [dm3] X_12901374_SNP [dm6]	C	A	6.520e^-4	0.991	UTR_3_PRIME CG4407 UPSTREAM CG32649	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	12357200	3L_12357200_SNP [dm3] 3L_12364100_SNP [dm6]	A	G	6.524e^-4	0.991	INTERGENIC
X	12265077	X_12265077_SNP [dm3] X_12371044_SNP [dm6]	A	G	6.527e^-4	0.991	INTERGENIC
2R	12094129	2R_12094129_SNP [dm3] 2R_16206624_SNP [dm6]	T	G	6.527e^-4	0.991	UPSTREAM mrj INTRON mrj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	19711149	3R_19711149_SNP [dm3] 3R_23885427_SNP [dm6]	G	A	6.529e^-4	0.991	INTRON Pli	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	5547216	X_5547216_SNP [dm3] X_5653183_SNP [dm6]	A	T	6.532e^-4	0.991	UTR_3_PRIME CG42265
X	5547220	X_5547220_SNP [dm3] X_5653187_SNP [dm6]	T	G	6.532e^-4	0.991	UTR_3_PRIME CG42265
X	5547240	X_5547240_SNP [dm3] X_5653207_SNP [dm6]	C	A	6.532e^-4	0.991	UTR_3_PRIME CG42265
2L	9187352	2L_9187352_SNP [dm3] 2L_9187352_SNP [dm6]	G	A	6.545e^-4	0.991	INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18639809	2L_18639809_SNP [dm3] 2L_18639809_SNP [dm6]	C	A	6.545e^-4	0.991	INTRON MESR3
2R	18901764	2R_18901764_SNP [dm3] 2R_23014241_SNP [dm6]	A	T	6.561e^-4	0.991	INTRON twi & 1 other	TF binding site BDTNP1_TFBS_twi
X	5880610	X_5880610_SNP [dm3] X_5986577_SNP [dm6]	G	A	6.566e^-4	0.991	UTR_3_PRIME Grip
2L	15470593	2L_15470593_SNP [dm3] 2L_15470593_SNP [dm6]	T	C	6.587e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9502577	2R_9502577_SNP [dm3] 2R_13615072_SNP [dm6]	C	G	6.598e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5186720	3L_5186720_SNP [dm3] 3L_5193620_SNP [dm6]	A	G	6.621e^-4	0.991	INTRON shep
2L	4184520	2L_4184520_SNP [dm3] 2L_4184520_SNP [dm6]	C	T	6.621e^-4	0.991	UPSTREAM CR44057 INTERGENIC
2R	12612595	2R_12612595_SNP [dm3] 2R_16725090_SNP [dm6]	T	A	6.644e^-4	0.991	INTRON CG30463
3L	21354863	3L_21354863_SNP [dm3] 3L_21361763_SNP [dm6]	A	C	6.655e^-4	0.991	DOWNSTREAM CG32440 INTERGENIC
3R	26037135	3R_26037135_SNP [dm3] 3R_30211413_SNP [dm6]	T	C	6.667e^-4	0.991	UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM CecA1 INTERGENIC
2L	9154786	2L_9154786_SNP [dm3] 2L_9154786_SNP [dm6]	T	A	6.668e^-4	0.991	INTRON CG32982
X	6505484	X_6505484_SNP [dm3] X_6611451_SNP [dm6]	C	G	6.674e^-4	0.991	INTRON pigs
3L	3876405	3L_3876405_SNP [dm3] 3L_3876405_SNP [dm6]	T	A	6.681e^-4	0.991	INTERGENIC
3R	15045791	3R_15045791_SNP [dm3] 3R_19220069_SNP [dm6]	C	A	6.682e^-4	0.991	INTRON vib
2L	1043891	2L_1043891_SNP [dm3] 2L_1043891_SNP [dm6]	A	C	6.686e^-4	0.991	UPSTREAM IA-2 INTRON IA-2
2R	8479638	2R_8479638_SNP [dm3] 2R_12592133_SNP [dm6]	A	T	6.693e^-4	0.991	DOWNSTREAM CR30055 INTRON Sin3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5440687	3R_5440687_INS [dm3] 3R_9614965_INS [dm6]	A	AAA	6.697e^-4	0.991	INTRON CG8312
X	16597551	X_16597551_SNP [dm3] X_16703518_SNP [dm6]	T	C	6.710e^-4	0.991	UPSTREAM CG4653 INTRON CG4678 & 1 other	TF binding site mE1_TFBS_chinmo
3L	7388279	3L_7388279_SNP [dm3] 3L_7395179_SNP [dm6]	G	C	6.721e^-4	0.991	INTRON CG8563
3L	11529833	3L_11529833_INS [dm3] 3L_11536733_INS [dm6]	A	AAA	6.730e^-4	0.991	INTRON Mob2
3R	11493671	3R_11493671_SNP [dm3] 3R_15667949_SNP [dm6]	A	T	6.740e^-4	0.991	UPSTREAM CR43849 INTRON pxb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	14102097	3L_14102097_SNP [dm3] 3L_14108997_SNP [dm6]	C	T	6.749e^-4	0.991	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	9536109	3R_9536109_SNP [dm3] 3R_13710387_SNP [dm6]	C	T	6.774e^-4	0.991	SYNONYMOUS_CODING primo-1 UTR_3_PRIME primo-2 UPSTREAM CG31469	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	12176075	2L_12176075_SNP [dm3] 2L_12176075_SNP [dm6]	C	T	6.778e^-4	0.991	INTRON aret & 1 other
3L	10019087	3L_10019087_SNP [dm3] 3L_10025987_SNP [dm6]	T	A	6.796e^-4	0.991	INTRON dpr6
3R	12915410	3R_12915410_SNP [dm3] 3R_17089688_SNP [dm6]	T	A	6.810e^-4	0.991	SYNONYMOUS_CODING cal1	TF binding site mE1_TFBS_sens
2L	1901211	2L_1901211_SNP [dm3] 2L_1901211_SNP [dm6]	A	T	6.813e^-4	0.991	INTRON CG7337
3R	7547986	3R_7547986_SNP [dm3] 3R_11722264_SNP [dm6]	T	A	6.819e^-4	0.991	UTR_5_PRIME CG12594
X	21329292	X_21329292_SNP [dm3] X_21458265_SNP [dm6]	G	A	6.820e^-4	0.991	UPSTREAM CG42343 INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi

By genomic position
Variant impact
Gene name

mn_TAG_Glycerol phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results