DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.055e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1727 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25245877	3R_25245877_DEL [dm3] 3R_29420155_DEL [dm6]	CTAAGCCCCAACTGACCAGC...	C	2.132e^-6	0.961	INTRON Ptp99A
3R	8433240	3R_8433240_SNP [dm3] 3R_12607518_SNP [dm6]	T	A	3.889e^-6	0.961	INTERGENIC
2R	14356798	2R_14356798_SNP [dm3] 2R_18469293_SNP [dm6]	C	T	6.111e^-6	0.961	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6225017	2R_6225017_SNP [dm3] 2R_10337512_SNP [dm6]	A	G	6.653e^-6	0.961	INTRON CG42732
3R	13043200	3R_13043200_SNP [dm3] 3R_17217478_SNP [dm6]	C	A	6.880e^-6	0.961	NON_SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	13676132	2L_13676132_SNP [dm3] 2L_13676132_SNP [dm6]	C	G	8.013e^-6	0.961	DOWNSTREAM CG31814 INTERGENIC
3L	1994648	3L_1994648_SNP [dm3] 3L_1994648_SNP [dm6]	A	T	9.454e^-6	0.961	INTERGENIC
2L	8664332	2L_8664332_SNP [dm3] 2L_8664332_SNP [dm6]	C	T	1.042e^-5	0.961	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	18442505	2L_18442505_SNP [dm3] 2L_18442505_SNP [dm6]	T	A	1.049e^-5	0.961	SPLICE_SITE_REGION RpS26 UTR_3_PRIME RpS26 DOWNSTREAM RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	3418927	2L_3418927_SNP [dm3] 2L_3418927_SNP [dm6]	A	G	1.312e^-5	0.961	DOWNSTREAM CG31952 INTRON pgant2
2L	8664297	2L_8664297_SNP [dm3] 2L_8664297_SNP [dm6]	G	A	1.397e^-5	0.961	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	8664347	2L_8664347_SNP [dm3] 2L_8664347_SNP [dm6]	T	C	1.397e^-5	0.961	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4662176	3R_4662176_SNP [dm3] 3R_8836454_SNP [dm6]	C	A	1.426e^-5	0.961	UTR_3_PRIME pyd INTRON pyd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	11447766	3L_11447766_SNP [dm3] 3L_11454666_SNP [dm6]	A	G	1.452e^-5	0.961	INTERGENIC
2L	18595778	2L_18595778_SNP [dm3] 2L_18595778_SNP [dm6]	C	T	1.595e^-5	0.961	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs
3L	8306711	3L_8306711_SNP [dm3] 3L_8313611_SNP [dm6]	A	C	1.626e^-5	0.961	INTRON CG7185
2R	17205839	2R_17205839_SNP [dm3] 2R_21318334_SNP [dm6]	G	A	1.888e^-5	0.961	SYNONYMOUS_CODING CG9485 UTR_3_PRIME CG33655
2L	11374401	2L_11374401_SNP [dm3] 2L_11374401_SNP [dm6]	C	T	1.969e^-5	0.961	DOWNSTREAM salr INTERGENIC
3R	25551240	3R_25551240_SNP [dm3] 3R_29725518_SNP [dm6]	A	G	2.012e^-5	0.961	SYNONYMOUS_CODING CG18731 UPSTREAM Kul & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5527510	2R_5527510_SNP [dm3] 2R_9640005_SNP [dm6]	A	C	2.044e^-5	0.961	INTRON Mmp2
3L	5081051	3L_5081051_SNP [dm3] 3L_5081051_SNP [dm6]	C	G	2.121e^-5	0.961	INTERGENIC
3R	26881526	3R_26881526_SNP [dm3] 3R_31055804_SNP [dm6]	G	A	2.161e^-5	0.961	UTR_3_PRIME dco
2L	7221502	2L_7221502_SNP [dm3] 2L_7221502_SNP [dm6]	C	T	2.293e^-5	0.961	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
3L	5081101	3L_5081101_SNP [dm3] 3L_5081101_SNP [dm6]	A	T	2.350e^-5	0.961	INTERGENIC
2L	8812848	2L_8812848_SNP [dm3] 2L_8812848_SNP [dm6]	T	C	2.446e^-5	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18630544	3L_18630544_SNP [dm3] 3L_18637444_SNP [dm6]	A	G	2.457e^-5	0.961	INTRON MYPT-75D
2L	16767626	2L_16767626_SNP [dm3] 2L_16767626_SNP [dm6]	T	A	2.543e^-5	0.961	UPSTREAM Mhc INTRON Mhc	regulatory region REDfly_CRMs
3R	25551481	3R_25551481_SNP [dm3] 3R_29725759_SNP [dm6]	A	G	2.738e^-5	0.961	UPSTREAM Kul & 1 other DOWNSTREAM CG18731 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14416349	2R_14416349_SNP [dm3] 2R_18528844_SNP [dm6]	C	T	2.751e^-5	0.961	INTRON CG10924	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15232622	3R_15232622_SNP [dm3] 3R_19406900_SNP [dm6]	C	A	2.802e^-5	0.961	DOWNSTREAM CG5316 INTERGENIC
2R	16678770	2R_16678770_SNP [dm3] 2R_20791265_SNP [dm6]	G	A	2.884e^-5	0.961	UPSTREAM CG43677 DOWNSTREAM CG43668 INTERGENIC
2R	15823956	2R_15823956_SNP [dm3] 2R_19936451_SNP [dm6]	C	G	2.893e^-5	0.961	INTERGENIC
3L	5081021	3L_5081021_SNP [dm3] 3L_5081021_SNP [dm6]	A	G	2.944e^-5	0.961	INTERGENIC
3L	5122688	3L_5122688_SNP [dm3] 3L_5129588_SNP [dm6]	T	A	2.977e^-5	0.961	UPSTREAM CG4597 INTERGENIC
3L	5122699	3L_5122699_SNP [dm3] 3L_5129599_SNP [dm6]	C	T	2.977e^-5	0.961	UPSTREAM CG4597 INTERGENIC
X	12153632	X_12153632_SNP [dm3] X_12259599_SNP [dm6]	G	A	3.181e^-5	0.961	INTRON Ten-a
3L	6845479	3L_6845479_SNP [dm3] 3L_6852379_SNP [dm6]	T	C	3.402e^-5	0.961	INTERGENIC
3L	18853052	3L_18853052_SNP [dm3] 3L_18859952_SNP [dm6]	T	A	3.456e^-5	0.961	INTERGENIC
3L	5081072	3L_5081072_SNP [dm3] 3L_5081072_SNP [dm6]	C	A	3.462e^-5	0.961	INTERGENIC
3L	5081078	3L_5081078_MNP [dm3] 3L_5081078_MNP [dm6]	AAA	TTT	3.462e^-5	0.961	INTERGENIC
3L	5081082	3L_5081082_SNP [dm3] 3L_5081082_SNP [dm6]	C	T	3.462e^-5	0.961	INTERGENIC
2R	18791145	2R_18791145_SNP [dm3] 2R_22903622_SNP [dm6]	C	T	3.479e^-5	0.961	INTRON nahoda
3L	11407683	3L_11407683_SNP [dm3] 3L_11414583_SNP [dm6]	A	T	3.502e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16952522	2R_16952522_SNP [dm3] 2R_21065017_SNP [dm6]	G	T	3.535e^-5	0.961	UPSTREAM Cht12 DOWNSTREAM Cht4 INTERGENIC
3R	18630980	3R_18630980_SNP [dm3] 3R_22805258_SNP [dm6]	G	A	3.793e^-5	0.961	NON_SYNONYMOUS_CODING CG7031	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11557426	3L_11557426_SNP [dm3] 3L_11564326_SNP [dm6]	A	C	3.810e^-5	0.961	UPSTREAM CG33267 DOWNSTREAM CG7394 INTERGENIC
X	16961209	X_16961209_SNP [dm3] X_17067176_SNP [dm6]	A	T	3.894e^-5	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
3L	5912106	3L_5912106_SNP [dm3] 3L_5919006_SNP [dm6]	A	G	3.948e^-5	0.961	INTRON CG10483 EXON CR45167
3L	1416962	3L_1416962_SNP [dm3] 3L_1416962_SNP [dm6]	T	C	4.020e^-5	0.961	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1416974	3L_1416974_SNP [dm3] 3L_1416974_SNP [dm6]	C	A	4.020e^-5	0.961	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	3100617	X_3100617_SNP [dm3] X_3206584_SNP [dm6]	T	A	4.030e^-5	0.961	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14420145	2R_14420145_SNP [dm3] 2R_18532640_SNP [dm6]	C	T	4.043e^-5	0.961	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14420147	2R_14420147_SNP [dm3] 2R_18532642_SNP [dm6]	A	T	4.043e^-5	0.961	INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15819305	2R_15819305_SNP [dm3] 2R_19931800_SNP [dm6]	C	T	4.065e^-5	0.961	INTERGENIC
3L	12054994	3L_12054994_SNP [dm3] 3L_12061894_SNP [dm6]	C	T	4.203e^-5	0.961	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad
X	3100622	X_3100622_SNP [dm3] X_3206589_SNP [dm6]	A	T	4.568e^-5	0.961	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11131199	3L_11131199_SNP [dm3] 3L_11138099_SNP [dm6]	A	G	4.607e^-5	0.961	INTRON CG32082
2L	9493003	2L_9493003_SNP [dm3] 2L_9493003_SNP [dm6]	G	A	4.630e^-5	0.961	SYNONYMOUS_CODING Gdi	TF binding site mE1_TFBS_cad
2R	15817219	2R_15817219_SNP [dm3] 2R_19929714_SNP [dm6]	C	A	4.686e^-5	0.961	INTERGENIC
2R	11703045	2R_11703045_SNP [dm3] 2R_15815540_SNP [dm6]	A	T	4.730e^-5	0.961	UPSTREAM Zasp52 INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4094648	3L_4094648_SNP [dm3] 3L_4094648_SNP [dm6]	T	A	4.749e^-5	0.961	UTR_3_PRIME CG14995 DOWNSTREAM CG14990
3L	5081066	3L_5081066_SNP [dm3] 3L_5081066_SNP [dm6]	C	G	4.820e^-5	0.961	INTERGENIC
3L	8458011	3L_8458011_SNP [dm3] 3L_8464911_SNP [dm6]	T	C	4.903e^-5	0.961	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4661845	3L_4661845_INS [dm3] 3L_4661845_INS [dm6]	C	CC	4.926e^-5	0.961	INTRON axo
3L	14366814	3L_14366814_SNP [dm3] 3L_14373714_SNP [dm6]	C	T	4.927e^-5	0.961	INTERGENIC
X	16961245	X_16961245_SNP [dm3] X_17067212_SNP [dm6]	A	T	5.058e^-5	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
3L	18854045	3L_18854045_SNP [dm3] 3L_18860945_SNP [dm6]	G	C	5.062e^-5	0.961	UPSTREAM mir-315 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6220781	2R_6220781_SNP [dm3] 2R_10333276_SNP [dm6]	A	G	5.121e^-5	0.961	INTRON CG42732
2R	15823928	2R_15823928_SNP [dm3] 2R_19936423_SNP [dm6]	C	T	5.206e^-5	0.961	INTERGENIC
3L	5081089	3L_5081089_SNP [dm3] 3L_5081089_SNP [dm6]	A	T	5.227e^-5	0.961	INTERGENIC
3R	27100952	3R_27100952_SNP [dm3] 3R_31275230_SNP [dm6]	C	A	5.245e^-5	0.961	INTERGENIC
2R	7532866	2R_7532866_SNP [dm3] 2R_11645361_SNP [dm6]	G	T	5.294e^-5	0.961	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	6845484	3L_6845484_SNP [dm3] 3L_6852384_SNP [dm6]	A	T	5.326e^-5	0.961	INTERGENIC
2L	7005341	2L_7005341_SNP [dm3] 2L_7005341_SNP [dm6]	A	C	5.360e^-5	0.961	INTRON uif
3R	14634152	3R_14634152_SNP [dm3] 3R_18808430_SNP [dm6]	C	G	5.390e^-5	0.961	INTRON CG18208
2L	11966881	2L_11966881_SNP [dm3] 2L_11966881_SNP [dm6]	G	A	5.597e^-5	0.961	INTRON CR43314
2L	8664271	2L_8664271_SNP [dm3] 2L_8664271_SNP [dm6]	T	A	5.680e^-5	0.961	INTRON Sema-1a	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7023568	3L_7023568_SNP [dm3] 3L_7030468_SNP [dm6]	A	C	5.815e^-5	0.961	INTRON Mp
2R	17396979	2R_17396979_SNP [dm3] 2R_21509474_SNP [dm6]	T	C	5.913e^-5	0.961	INTRON MESK2
3L	11131251	3L_11131251_DEL [dm3] 3L_11138151_DEL [dm6]	TTTGGTTTG	T	6.046e^-5	0.961	INTRON CG32082
3L	11131262	3L_11131262_SNP [dm3] 3L_11138162_SNP [dm6]	T	A	6.046e^-5	0.961	INTRON CG32082
3L	5130096	3L_5130096_SNP [dm3] 3L_5136996_SNP [dm6]	A	G	6.223e^-5	0.961	SYNONYMOUS_CODING CG4611 UPSTREAM CG10674 DOWNSTREAM CR45160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17039531	3R_17039531_SNP [dm3] 3R_21213809_SNP [dm6]	C	A	6.250e^-5	0.961	UTR_3_PRIME SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	5524192	2R_5524192_SNP [dm3] 2R_9636687_SNP [dm6]	C	G	6.261e^-5	0.961	DOWNSTREAM CR44070 INTRON Mmp2
3R	18266037	3R_18266037_SNP [dm3] 3R_22440315_SNP [dm6]	C	T	6.660e^-5	0.961	NON_SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
2R	18923662	2R_18923662_SNP [dm3] 2R_23036139_SNP [dm6]	T	C	6.730e^-5	0.961	INTRON twi & 1 other	TF binding site mE1_TFBS_inv
3R	25245831	3R_25245831_DEL [dm3] 3R_29420109_DEL [dm6]	AGCTTTCTTT	A	6.763e^-5	0.961	INTRON Ptp99A
3L	11131203	3L_11131203_SNP [dm3] 3L_11138103_SNP [dm6]	G	T	6.795e^-5	0.961	INTRON CG32082
X	9074311	X_9074311_SNP [dm3] X_9180278_SNP [dm6]	G	T	6.829e^-5	0.961	UTR_3_PRIME mei-P26
3R	26440609	3R_26440609_SNP [dm3] 3R_30614887_SNP [dm6]	C	T	6.845e^-5	0.961	EXON CR45571
3R	25532787	3R_25532787_INS [dm3] 3R_29707065_INS [dm6]	T	TAGCCAAGCTAAACAT...	6.899e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8720628	3R_8720628_SNP [dm3] 3R_12894906_SNP [dm6]	G	T	7.008e^-5	0.961	UPSTREAM CR33929 INTERGENIC
2R	12580798	2R_12580798_SNP [dm3] 2R_16693293_SNP [dm6]	T	C	7.058e^-5	0.961	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
2R	9683802	2R_9683802_SNP [dm3] 2R_13796297_SNP [dm6]	A	G	7.193e^-5	0.961	INTRON Cpr50Cb
2R	9683805	2R_9683805_SNP [dm3] 2R_13796300_SNP [dm6]	A	G	7.193e^-5	0.961	INTRON Cpr50Cb
2L	5860104	2L_5860104_SNP [dm3] 2L_5860104_SNP [dm6]	A	C	7.289e^-5	0.961	UTR_3_PRIME rau	TF binding site mE1_TFBS_cad
2R	14356525	2R_14356525_SNP [dm3] 2R_18469020_SNP [dm6]	T	A	7.465e^-5	0.961	INTRON CG30116
2R	14356542	2R_14356542_SNP [dm3] 2R_18469037_SNP [dm6]	G	A	7.693e^-5	0.961	INTRON CG30116
3R	17970150	3R_17970150_SNP [dm3] 3R_22144428_SNP [dm6]	G	T	7.748e^-5	0.961	INTRON SKIP
2L	3416411	2L_3416411_SNP [dm3] 2L_3416411_SNP [dm6]	C	T	7.820e^-5	0.961	UPSTREAM CG31952 INTRON pgant2
3R	25245849	3R_25245849_SNP [dm3] 3R_29420127_SNP [dm6]	A	G	7.843e^-5	0.961	INTRON Ptp99A
2R	13545002	2R_13545002_SNP [dm3] 2R_17657497_SNP [dm6]	T	A	7.893e^-5	0.961	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
2R	13537813	2R_13537813_SNP [dm3] 2R_17650308_SNP [dm6]	G	A	7.927e^-5	0.961	INTRON CCHa1-R
3L	11794211	3L_11794211_SNP [dm3] 3L_11801111_SNP [dm6]	G	A	8.014e^-5	0.961	UPSTREAM CG10361 DOWNSTREAM tRNA:CR32093 & 1 other INTERGENIC
X	12153659	X_12153659_SNP [dm3] X_12259626_SNP [dm6]	A	G	8.023e^-5	0.961	INTRON Ten-a
2R	7568676	2R_7568676_SNP [dm3] 2R_11681171_SNP [dm6]	C	A	8.109e^-5	0.961	INTRON Buffy
3R	16925691	3R_16925691_SNP [dm3] 3R_21099969_SNP [dm6]	T	C	8.236e^-5	0.961	NON_SYNONYMOUS_CODING CG7044	TF binding site mE1_TFBS_sens
2R	762732	2R_762732_DEL [dm3] 2R_4875227_DEL [dm6]	GCCACCCTGCGGCGATTCCA...	G	8.276e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi transposable element FlyBase
2R	7532863	2R_7532863_SNP [dm3] 2R_11645358_SNP [dm6]	C	G	8.335e^-5	0.961	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
2R	5523950	2R_5523950_SNP [dm3] 2R_9636445_SNP [dm6]	C	G	8.544e^-5	0.961	DOWNSTREAM CR44070 INTRON Mmp2
2R	14240519	2R_14240519_SNP [dm3] 2R_18353014_SNP [dm6]	A	G	8.597e^-5	0.961	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15947627	2R_15947627_DEL [dm3] 2R_20060122_DEL [dm6]	GGTCG	G	8.758e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5525917	2R_5525917_SNP [dm3] 2R_9638412_SNP [dm6]	C	T	8.760e^-5	0.961	UPSTREAM CR44070 INTRON Mmp2
3L	4391731	3L_4391731_SNP [dm3] 3L_4391731_SNP [dm6]	G	A	8.779e^-5	0.961	INTRON slow	TF binding site mE1_TFBS_cad
2R	20205865	2R_20205865_SNP [dm3] 2R_24318342_SNP [dm6]	A	G	8.958e^-5	0.961	INTERGENIC
2R	6863339	2R_6863339_SNP [dm3] 2R_10975834_SNP [dm6]	T	C	8.965e^-5	0.961	INTERGENIC
3L	1994707	3L_1994707_SNP [dm3] 3L_1994707_SNP [dm6]	C	G	9.041e^-5	0.961	INTERGENIC
3R	27251840	3R_27251840_SNP [dm3] 3R_31426118_SNP [dm6]	C	T	9.139e^-5	0.961	INTRON Gprk2
3R	15179932	3R_15179932_SNP [dm3] 3R_19354210_SNP [dm6]	T	A	9.152e^-5	0.961	NON_SYNONYMOUS_CODING CG43203	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	15381051	2L_15381051_SNP [dm3] 2L_15381051_SNP [dm6]	C	A	9.158e^-5	0.961	INTERGENIC
2L	8504472	2L_8504472_INS [dm3] 2L_8504472_INS [dm6]	C	CACGC	9.196e^-5	0.961	INTRON Dh31
X	19901227	X_19901227_SNP [dm3] X_20007194_SNP [dm6]	C	A	9.405e^-5	0.961	NON_SYNONYMOUS_CODING Dop2R	TF binding site mE1_TFBS_chinmo
3R	27153377	3R_27153377_SNP [dm3] 3R_31327655_SNP [dm6]	C	G	9.511e^-5	0.961	INTRON CG34347	TF binding site mE1_TFBS_cad
3R	8720166	3R_8720166_SNP [dm3] 3R_12894444_SNP [dm6]	C	A	9.616e^-5	0.961	INTRON CR33929
2R	14240523	2R_14240523_SNP [dm3] 2R_18353018_SNP [dm6]	G	A	9.680e^-5	0.961	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5081071	3L_5081071_SNP [dm3] 3L_5081071_SNP [dm6]	C	A	9.726e^-5	0.961	INTERGENIC
2L	18587167	2L_18587167_SNP [dm3] 2L_18587167_SNP [dm6]	C	T	9.847e^-5	0.961	INTRON Pde11
2L	18403991	2L_18403991_DEL [dm3] 2L_18403991_DEL [dm6]	GGGAAACTGG	G	9.948e^-5	0.961	EXON CR44487
2L	11152787	2L_11152787_INS [dm3] 2L_11152787_INS [dm6]	C	CTCACAAC	1.019e^-4	0.961	INTRON CG6287	TF binding site mE1_TFBS_cad
3L	8458020	3L_8458020_SNP [dm3] 3L_8464920_SNP [dm6]	A	T	1.025e^-4	0.961	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5130021	3L_5130021_SNP [dm3] 3L_5136921_SNP [dm6]	C	T	1.034e^-4	0.961	SYNONYMOUS_CODING CG4611 UPSTREAM CG10674 DOWNSTREAM CR45160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18900055	X_18900055_DEL [dm3] X_19006022_DEL [dm6]	AACTGA	A	1.045e^-4	0.961	INTRON CG43759	TF binding site mE1_TFBS_HSA
3L	8458443	3L_8458443_SNP [dm3] 3L_8465343_SNP [dm6]	A	G	1.058e^-4	0.961	SYNONYMOUS_CODING Gug	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17169211	X_17169211_SNP [dm3] X_17275178_SNP [dm6]	A	C	1.067e^-4	0.961	UPSTREAM f INTRON f
X	18730187	X_18730187_SNP [dm3] X_18836154_SNP [dm6]	C	T	1.076e^-4	0.961	INTRON Pvf1
3R	12551944	3R_12551944_SNP [dm3] 3R_16726222_SNP [dm6]	A	G	1.080e^-4	0.961	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2646310	3L_2646310_SNP [dm3] 3L_2646310_SNP [dm6]	T	C	1.080e^-4	0.961	SYNONYMOUS_CODING CG1143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14964904	2L_14964904_SNP [dm3] 2L_14964904_SNP [dm6]	G	A	1.106e^-4	0.961	INTRON CG42313
3R	21590801	3R_21590801_SNP [dm3] 3R_25765079_SNP [dm6]	T	C	1.111e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	9683782	2R_9683782_SNP [dm3] 2R_13796277_SNP [dm6]	A	T	1.115e^-4	0.961	INTRON Cpr50Cb
2L	18587199	2L_18587199_SNP [dm3] 2L_18587199_SNP [dm6]	T	G	1.117e^-4	0.961	INTRON Pde11
2R	17355734	2R_17355734_SNP [dm3] 2R_21468229_SNP [dm6]	G	A	1.125e^-4	0.961	INTRON Sdc	TF binding site BDTNP1_TFBS_dl
3R	25245851	3R_25245851_SNP [dm3] 3R_29420129_SNP [dm6]	A	T	1.136e^-4	0.961	INTRON Ptp99A
2R	5524309	2R_5524309_SNP [dm3] 2R_9636804_SNP [dm6]	A	G	1.145e^-4	0.961	DOWNSTREAM CR44070 INTRON Mmp2
2R	5526485	2R_5526485_SNP [dm3] 2R_9638980_SNP [dm6]	G	T	1.145e^-4	0.961	INTRON Mmp2
2R	17721803	2R_17721803_SNP [dm3] 2R_21834298_SNP [dm6]	A	C	1.160e^-4	0.961	UTR_3_PRIME CG4363 UPSTREAM CG34040
2L	10902618	2L_10902618_SNP [dm3] 2L_10902618_SNP [dm6]	A	G	1.179e^-4	0.961	UPSTREAM CG14070 INTERGENIC
3L	15774976	3L_15774976_SNP [dm3] 3L_15781876_SNP [dm6]	A	T	1.183e^-4	0.961	INTERGENIC
2R	7594460	2R_7594460_SNP [dm3] 2R_11706955_SNP [dm6]	A	T	1.195e^-4	0.961	UPSTREAM CR45377 INTERGENIC
2L	9173978	2L_9173978_SNP [dm3] 2L_9173978_SNP [dm6]	G	T	1.215e^-4	0.961	INTRON tai
2R	10951464	2R_10951464_DEL [dm3] 2R_15063959_DEL [dm6]	GCAA	T	1.223e^-4	0.961	INTERGENIC
3L	18309363	3L_18309363_SNP [dm3] 3L_18316263_SNP [dm6]	G	A	1.225e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15898273	3R_15898273_SNP [dm3] 3R_20072551_SNP [dm6]	C	T	1.249e^-4	0.961	INTERGENIC
2R	8926504	2R_8926504_SNP [dm3] 2R_13038999_SNP [dm6]	C	A	1.257e^-4	0.961	INTERGENIC	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15165996	2R_15165996_SNP [dm3] 2R_19278491_SNP [dm6]	T	G	1.260e^-4	0.961	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2947866	2L_2947866_SNP [dm3] 2L_2947866_SNP [dm6]	T	A	1.265e^-4	0.961	SYNONYMOUS_CODING lilli	TF binding site mE1_TFBS_chinmo
3R	22229222	3R_22229222_SNP [dm3] 3R_26403500_SNP [dm6]	A	G	1.267e^-4	0.961	INTRON ppk15
X	7698147	X_7698147_SNP [dm3] X_7804114_SNP [dm6]	A	G	1.267e^-4	0.961	INTERGENIC
3L	14499537	3L_14499537_SNP [dm3] 3L_14506437_SNP [dm6]	T	C	1.276e^-4	0.961	INTRON bbg
3R	22760740	3R_22760740_SNP [dm3] 3R_26935018_SNP [dm6]	C	T	1.302e^-4	0.961	INTRON sda
3L	5101323	3L_5101323_SNP [dm3] 3L_5101323_SNP [dm6]	A	T	1.306e^-4	0.961	INTERGENIC
X	19759438	X_19759438_SNP [dm3] X_19865405_SNP [dm6]	C	T	1.320e^-4	0.961	SYNONYMOUS_CODING CG15618 UPSTREAM Hers	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h
3L	7032043	3L_7032043_SNP [dm3] 3L_7038943_SNP [dm6]	C	G	1.329e^-4	0.961	INTRON Mp
2R	18786629	2R_18786629_SNP [dm3] 2R_22899106_SNP [dm6]	G	A	1.342e^-4	0.961	INTRON nahoda
3R	17185020	3R_17185020_SNP [dm3] 3R_21359298_SNP [dm6]	C	T	1.342e^-4	0.961	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3R	18195275	3R_18195275_SNP [dm3] 3R_22369553_SNP [dm6]	A	C	1.350e^-4	0.961	SYNONYMOUS_CODING PyK INTRON PyK	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20672365	3R_20672365_SNP [dm3] 3R_24846643_SNP [dm6]	A	G	1.350e^-4	0.961	UPSTREAM Esp INTRON Esp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18588992	2L_18588992_SNP [dm3] 2L_18588992_SNP [dm6]	A	C	1.350e^-4	0.961	INTRON Pde11
2R	16736405	2R_16736405_SNP [dm3] 2R_20848900_SNP [dm6]	G	A	1.361e^-4	0.961	SYNONYMOUS_CODING CG17999
3L	993082	3L_993082_SNP [dm3] 3L_993082_SNP [dm6]	G	A	1.362e^-4	0.961	UTR_3_PRIME Glut1 UPSTREAM CG12038
3L	1502210	3L_1502210_SNP [dm3] 3L_1502210_SNP [dm6]	A	G	1.365e^-4	0.961	UPSTREAM Psa INTRON pUf68	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8253954	2L_8253954_SNP [dm3] 2L_8253954_SNP [dm6]	T	C	1.366e^-4	0.961	UPSTREAM CG8086 INTRON CG8086	TF binding site BDTNP1_TFBS_twi
X	9730716	X_9730716_SNP [dm3] X_9836683_SNP [dm6]	A	G	1.380e^-4	0.961	SYNONYMOUS_CODING CG32698
3R	12054398	3R_12054398_INS [dm3] 3R_16228676_INS [dm6]	C	CTTC	1.387e^-4	0.961	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
2L	18401867	2L_18401867_SNP [dm3] 2L_18401867_SNP [dm6]	G	A	1.398e^-4	0.961	DOWNSTREAM CR44486 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8720144	3R_8720144_SNP [dm3] 3R_12894422_SNP [dm6]	T	A	1.401e^-4	0.961	INTRON CR33929
3L	1851251	3L_1851251_SNP [dm3] 3L_1851251_SNP [dm6]	T	G	1.401e^-4	0.961	UTR_3_PRIME CG13936 DOWNSTREAM CG13936
2R	18165534	2R_18165534_SNP [dm3] 2R_22278029_SNP [dm6]	C	T	1.406e^-4	0.961	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11664221	2L_11664221_SNP [dm3] 2L_11664221_SNP [dm6]	C	T	1.413e^-4	0.961	DOWNSTREAM CG44477 INTERGENIC
2L	13235586	2L_13235586_SNP [dm3] 2L_13235586_SNP [dm6]	A	T	1.425e^-4	0.961	UPSTREAM CG15479 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4662038	3L_4662038_SNP [dm3] 3L_4662038_SNP [dm6]	C	T	1.458e^-4	0.961	INTRON axo
3L	4662039	3L_4662039_SNP [dm3] 3L_4662039_SNP [dm6]	G	T	1.458e^-4	0.961	INTRON axo
2R	17720609	2R_17720609_SNP [dm3] 2R_21833104_SNP [dm6]	A	G	1.462e^-4	0.961	INTRON CG34040	TF binding site mE1_TFBS_sens
3L	10966235	3L_10966235_SNP [dm3] 3L_10973135_SNP [dm6]	C	T	1.463e^-4	0.961	SYNONYMOUS_CODING CG14147
3L	2636983	3L_2636983_SNP [dm3] 3L_2636983_SNP [dm6]	A	C	1.465e^-4	0.961	INTRON MEP-1 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	8906836	3R_8906836_SNP [dm3] 3R_13081114_SNP [dm6]	A	G	1.479e^-4	0.961	INTERGENIC
2L	17267988	2L_17267988_SNP [dm3] 2L_17267988_SNP [dm6]	A	T	1.481e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	15345472	3R_15345472_SNP [dm3] 3R_19519750_SNP [dm6]	A	G	1.482e^-4	0.961	INTRON Dys
X	18464210	X_18464210_INS [dm3] X_18570177_INS [dm6]	C	CCCCTCC	1.488e^-4	0.961	INTRON Bx	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo
2L	15381056	2L_15381056_SNP [dm3] 2L_15381056_SNP [dm6]	T	A	1.490e^-4	0.961	INTERGENIC
2L	7221433	2L_7221433_SNP [dm3] 2L_7221433_SNP [dm6]	A	T	1.515e^-4	0.961	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
2R	7594457	2R_7594457_SNP [dm3] 2R_11706952_SNP [dm6]	G	T	1.525e^-4	0.961	UPSTREAM CR45377 INTERGENIC
2R	8496802	2R_8496802_SNP [dm3] 2R_12609297_SNP [dm6]	G	T	1.546e^-4	0.961	NON_SYNONYMOUS_CODING Amph INTRON Amph
3L	5103192	3L_5103192_SNP [dm3] 3L_5103192_SNP [dm6]	A	G	1.554e^-4	0.961	INTERGENIC
2L	9170552	2L_9170552_SNP [dm3] 2L_9170552_SNP [dm6]	G	T	1.566e^-4	0.961	INTRON tai
3L	3171829	3L_3171829_SNP [dm3] 3L_3171829_SNP [dm6]	C	G	1.569e^-4	0.961	NON_SYNONYMOUS_CODING CG14963 DOWNSTREAM CG32281 & 2 others
3L	10339288	3L_10339288_SNP [dm3] 3L_10346188_SNP [dm6]	G	A	1.602e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_sens
3R	11638219	3R_11638219_SNP [dm3] 3R_15812497_SNP [dm6]	C	A	1.602e^-4	0.961	UPSTREAM CR45211 INTRON alpha-Man-IIb
3R	21387716	3R_21387716_SNP [dm3] 3R_25561994_SNP [dm6]	T	G	1.611e^-4	0.961	INTRON msi
3R	22267901	3R_22267901_SNP [dm3] 3R_26442179_SNP [dm6]	C	T	1.616e^-4	0.961	INTRON tx
3L	18854238	3L_18854238_SNP [dm3] 3L_18861138_SNP [dm6]	G	C	1.619e^-4	0.961	DOWNSTREAM mir-315 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17041335	3R_17041335_SNP [dm3] 3R_21215613_SNP [dm6]	A	G	1.623e^-4	0.961	SYNONYMOUS_CODING CG5862	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22524195	3R_22524195_SNP [dm3] 3R_26698473_SNP [dm6]	C	G	1.629e^-4	0.961	UTR_3_PRIME amon
2R	18534113	2R_18534113_SNP [dm3] 2R_22646608_SNP [dm6]	T	C	1.651e^-4	0.961	UPSTREAM CG2852 DOWNSTREAM CG30195 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11503022	2R_11503022_SNP [dm3] 2R_15615517_SNP [dm6]	T	C	1.658e^-4	0.961	INTRON CG42524
3L	4391749	3L_4391749_SNP [dm3] 3L_4391749_SNP [dm6]	G	A	1.660e^-4	0.961	INTRON slow	TF binding site mE1_TFBS_cad
2L	9031371	2L_9031371_SNP [dm3] 2L_9031371_SNP [dm6]	G	A	1.672e^-4	0.961	INTRON CG9582 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10430089	3L_10430089_SNP [dm3] 3L_10436989_SNP [dm6]	T	A	1.676e^-4	0.961	INTERGENIC
X	14119923	X_14119923_SNP [dm3] X_14225890_SNP [dm6]	T	A	1.681e^-4	0.961	UPSTREAM mRpL38 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
2R	4725971	2R_4725971_SNP [dm3] 2R_8838466_SNP [dm6]	T	A	1.685e^-4	0.961	INTRON sns	TF binding site mE1_TFBS_chinmo
2L	10478237	2L_10478237_SNP [dm3] 2L_10478237_SNP [dm6]	G	T	1.693e^-4	0.961	INTRON RluA-2
2L	10478239	2L_10478239_SNP [dm3] 2L_10478239_SNP [dm6]	A	G	1.695e^-4	0.961	INTRON RluA-2
3R	17185023	3R_17185023_SNP [dm3] 3R_21359301_SNP [dm6]	G	A	1.699e^-4	0.961	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	10849735	3L_10849735_SNP [dm3] 3L_10856635_SNP [dm6]	A	G	1.702e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_zfh1
3R	17810670	3R_17810670_DEL [dm3] 3R_21984948_DEL [dm6]	ATCTCCAA	A	1.703e^-4	0.961	INTRON Eip93F
2L	15415534	2L_15415534_SNP [dm3] 2L_15415534_SNP [dm6]	G	A	1.704e^-4	0.961	INTERGENIC
3R	3880029	3R_3880029_SNP [dm3] 3R_8054307_SNP [dm6]	C	T	1.711e^-4	0.961	INTRON CG43060
3R	1070257	3R_1070257_SNP [dm3] 3R_5244535_SNP [dm6]	T	C	1.712e^-4	0.961	INTRON CG12163
2R	17370877	2R_17370877_SNP [dm3] 2R_21483372_SNP [dm6]	T	C	1.752e^-4	0.961	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5963131	3L_5963131_SNP [dm3] 3L_5970031_SNP [dm6]	C	A	1.753e^-4	0.961	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19995700	2L_19995700_SNP [dm3] 2L_19995700_SNP [dm6]	G	A	1.759e^-4	0.961	INTRON CG43861
3R	4121647	3R_4121647_SNP [dm3] 3R_8295925_SNP [dm6]	G	C	1.761e^-4	0.961	SYNONYMOUS_CODING CG9626	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	15380933	2L_15380933_SNP [dm3] 2L_15380933_SNP [dm6]	C	A	1.762e^-4	0.961	INTERGENIC
2L	9653768	2L_9653768_SNP [dm3] 2L_9653768_SNP [dm6]	T	A	1.801e^-4	0.961	SPLICE_SITE_REGION Apoltp INTRON Apoltp
3R	8907001	3R_8907001_SNP [dm3] 3R_13081279_SNP [dm6]	G	T	1.804e^-4	0.961	INTERGENIC
3L	11521702	3L_11521702_SNP [dm3] 3L_11528602_SNP [dm6]	T	A	1.812e^-4	0.961	INTRON Mob2
2R	7229789	2R_7229789_SNP [dm3] 2R_11342284_SNP [dm6]	A	T	1.827e^-4	0.961	SYNONYMOUS_CODING thetaTry UPSTREAM etaTry	TF binding site mE1_TFBS_cad
2R	18791105	2R_18791105_INS [dm3] 2R_22903582_INS [dm6]	G	GG	1.841e^-4	0.961	INTRON nahoda
3R	26440712	3R_26440712_SNP [dm3] 3R_30614990_SNP [dm6]	C	A	1.841e^-4	0.961	EXON CR45571
2L	15380882	2L_15380882_SNP [dm3] 2L_15380882_SNP [dm6]	C	T	1.845e^-4	0.961	INTERGENIC
3R	26199918	3R_26199918_SNP [dm3] 3R_30374196_SNP [dm6]	T	C	1.847e^-4	0.961	INTERGENIC
3L	4520075	3L_4520075_SNP [dm3] 3L_4520075_SNP [dm6]	C	A	1.860e^-4	0.961	INTRON Tie
3L	17239082	3L_17239082_SNP [dm3] 3L_17245982_SNP [dm6]	G	A	1.861e^-4	0.961	EXON CR43870	TF binding site BDTNP1_TFBS_dl
3R	26048702	3R_26048702_SNP [dm3] 3R_30222980_SNP [dm6]	A	T	1.862e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26048709	3R_26048709_SNP [dm3] 3R_30222987_SNP [dm6]	C	A	1.862e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26048712	3R_26048712_SNP [dm3] 3R_30222990_SNP [dm6]	A	T	1.862e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14590354	2L_14590354_SNP [dm3] 2L_14590354_SNP [dm6]	G	A	1.871e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14184146	3L_14184146_SNP [dm3] 3L_14191046_SNP [dm6]	T	A	1.890e^-4	0.961	UTR_5_PRIME nuf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	16086758	2R_16086758_SNP [dm3] 2R_20199253_SNP [dm6]	C	A	1.907e^-4	0.961	INTERGENIC
2R	16736048	2R_16736048_SNP [dm3] 2R_20848543_SNP [dm6]	A	C	1.907e^-4	0.961	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
3R	22760928	3R_22760928_SNP [dm3] 3R_26935206_SNP [dm6]	A	T	1.910e^-4	0.961	INTRON sda
2R	6622811	2R_6622811_SNP [dm3] 2R_10735306_SNP [dm6]	T	C	1.915e^-4	0.961	UPSTREAM CG7220 INTRON CG7220
2R	15817444	2R_15817444_DEL [dm3] 2R_19929939_DEL [dm6]	TGTTTTCCTGTCAAT...	T	1.922e^-4	0.961	INTERGENIC
2R	15817483	2R_15817483_SNP [dm3] 2R_19929978_SNP [dm6]	C	T	1.922e^-4	0.961	INTERGENIC
2R	15817485	2R_15817485_SNP [dm3] 2R_19929980_SNP [dm6]	C	T	1.922e^-4	0.961	INTERGENIC
3R	11321962	3R_11321962_SNP [dm3] 3R_15496240_SNP [dm6]	T	C	1.935e^-4	0.961	DOWNSTREAM CG5213 INTERGENIC
X	18730188	X_18730188_INS [dm3] X_18836155_INS [dm6]	A	ACATA	1.937e^-4	0.961	INTRON Pvf1
3L	6931009	3L_6931009_SNP [dm3] 3L_6937909_SNP [dm6]	C	T	1.967e^-4	0.961	DOWNSTREAM CR45414 INTERGENIC
X	17226938	X_17226938_SNP [dm3] X_17332905_SNP [dm6]	T	C	1.970e^-4	0.961	INTERGENIC
3R	19907567	3R_19907567_SNP [dm3] 3R_24081845_SNP [dm6]	C	G	1.981e^-4	0.961	INTRON 4EHP
2R	6090443	2R_6090443_INS [dm3] 2R_10202938_INS [dm6]	T	TA	1.986e^-4	0.961	INTERGENIC
2R	6090444	2R_6090444_INS [dm3] 2R_10202939_INS [dm6]	T	TT	1.986e^-4	0.961	INTERGENIC
3L	3171684	3L_3171684_SNP [dm3] 3L_3171684_SNP [dm6]	G	C	1.988e^-4	0.961	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	3171693	3L_3171693_DEL [dm3] 3L_3171693_DEL [dm6]	AAGT	A	1.988e^-4	0.961	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	3171705	3L_3171705_SNP [dm3] 3L_3171705_SNP [dm6]	G	A	1.988e^-4	0.961	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
3L	3171727	3L_3171727_SNP [dm3] 3L_3171727_SNP [dm6]	G	C	1.988e^-4	0.961	UTR_3_PRIME CG32278 & 1 other DOWNSTREAM CG32281
2R	6225067	2R_6225067_SNP [dm3] 2R_10337562_SNP [dm6]	A	G	2.008e^-4	0.961	INTRON CG42732
3R	19203867	3R_19203867_SNP [dm3] 3R_23378145_SNP [dm6]	G	A	2.010e^-4	0.961	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_inv
2R	15823647	2R_15823647_SNP [dm3] 2R_19936142_SNP [dm6]	C	G	2.012e^-4	0.961	INTERGENIC
3L	15843999	3L_15843999_SNP [dm3] 3L_15850899_SNP [dm6]	T	C	2.015e^-4	0.961	UTR_3_PRIME pHCl DOWNSTREAM pHCl
3L	4697035	3L_4697035_SNP [dm3] 3L_4697035_SNP [dm6]	C	G	2.024e^-4	0.961	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	8626005	3R_8626005_SNP [dm3] 3R_12800283_SNP [dm6]	C	A	2.031e^-4	0.961	INTERGENIC
3L	4632796	3L_4632796_SNP [dm3] 3L_4632796_SNP [dm6]	C	G	2.042e^-4	0.961	INTRON axo
3L	10958523	3L_10958523_SNP [dm3] 3L_10965423_SNP [dm6]	T	A	2.071e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2828388	2L_2828388_SNP [dm3] 2L_2828388_SNP [dm6]	A	T	2.076e^-4	0.961	INTRON Duox
2R	14356829	2R_14356829_SNP [dm3] 2R_18469324_SNP [dm6]	T	G	2.081e^-4	0.961	INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26866363	3R_26866363_SNP [dm3] 3R_31040641_SNP [dm6]	T	A	2.091e^-4	0.961	INTRON CanA1
X	18546213	X_18546213_SNP [dm3] X_18652180_SNP [dm6]	G	A	2.095e^-4	0.961	SYNONYMOUS_CODING Ing3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5306240	2R_5306240_SNP [dm3] 2R_9418735_SNP [dm6]	T	C	2.102e^-4	0.961	DOWNSTREAM wun2 INTERGENIC
3R	11638404	3R_11638404_SNP [dm3] 3R_15812682_SNP [dm6]	C	T	2.106e^-4	0.961	UPSTREAM CR45211 INTRON alpha-Man-IIb
3L	11406195	3L_11406195_SNP [dm3] 3L_11413095_SNP [dm6]	G	A	2.112e^-4	0.961	INTERGENIC
2R	8592421	2R_8592421_SNP [dm3] 2R_12704916_SNP [dm6]	T	C	2.119e^-4	0.961	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	13231818	3R_13231818_SNP [dm3] 3R_17406096_SNP [dm6]	G	A	2.122e^-4	0.961	NON_SYNONYMOUS_CODING CG42824 UPSTREAM CG42823 & 1 other
X	17226774	X_17226774_SNP [dm3] X_17332741_SNP [dm6]	G	A	2.126e^-4	0.961	INTERGENIC
2R	9705861	2R_9705861_SNP [dm3] 2R_13818356_SNP [dm6]	A	C	2.131e^-4	0.961	UTR_3_PRIME stj DOWNSTREAM stj
2L	6795240	2L_6795240_SNP [dm3] 2L_6795240_SNP [dm6]	T	G	2.139e^-4	0.961	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	25443013	3R_25443013_DEL [dm3] 3R_29617291_DEL [dm6]	GTTGCTTACTTTAACAG...	G	2.143e^-4	0.961	DOWNSTREAM alph INTERGENIC
3R	21372342	3R_21372342_SNP [dm3] 3R_25546620_SNP [dm6]	A	G	2.169e^-4	0.961	INTRON msi
3L	2483230	3L_2483230_DEL [dm3] 3L_2483230_DEL [dm6]	GG	G	2.170e^-4	0.961	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	6798101	3L_6798101_SNP [dm3] 3L_6805001_SNP [dm6]	T	C	2.170e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
2L	11374537	2L_11374537_SNP [dm3] 2L_11374537_SNP [dm6]	C	T	2.170e^-4	0.961	DOWNSTREAM salr INTERGENIC
3L	1682639	3L_1682639_SNP [dm3] 3L_1682639_SNP [dm6]	A	T	2.177e^-4	0.961	INTRON CG7991
3L	14499513	3L_14499513_SNP [dm3] 3L_14506413_SNP [dm6]	G	T	2.194e^-4	0.961	INTRON bbg
3R	11322016	3R_11322016_SNP [dm3] 3R_15496294_SNP [dm6]	A	C	2.195e^-4	0.961	DOWNSTREAM CG5213 INTERGENIC
2R	20626024	2R_20626024_SNP [dm3] 2R_24738501_SNP [dm6]	C	A	2.199e^-4	0.961	DOWNSTREAM CR44828 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6115270	3L_6115270_SNP [dm3] 3L_6122170_SNP [dm6]	G	A	2.221e^-4	0.961	UTR_3_PRIME Ets65A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	7222063	2L_7222063_SNP [dm3] 2L_7222063_SNP [dm6]	A	G	2.225e^-4	0.961	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12821874	2R_12821874_SNP [dm3] 2R_16934369_SNP [dm6]	G	A	2.231e^-4	0.961	INTRON Pkc53E
2L	14067854	2L_14067854_SNP [dm3] 2L_14067854_SNP [dm6]	T	G	2.233e^-4	0.961	INTRON nAChRalpha5
3L	7830925	3L_7830925_INS [dm3] 3L_7837825_INS [dm6]	T	TT	2.240e^-4	0.961	INTRON Pdp1	regulatory region REDfly_CRMs
2R	15987786	2R_15987786_SNP [dm3] 2R_20100281_SNP [dm6]	A	G	2.245e^-4	0.961	INTERGENIC
3R	27505454	3R_27505454_SNP [dm3] 3R_31679732_SNP [dm6]	C	T	2.249e^-4	0.961	SYNONYMOUS_CODING CG11550 DOWNSTREAM CR44091	TF binding site mE1_TFBS_sens
2R	17272145	2R_17272145_SNP [dm3] 2R_21384640_SNP [dm6]	T	C	2.257e^-4	0.961	SYNONYMOUS_CODING EfSec UPSTREAM CG10795	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	19351431	X_19351431_SNP [dm3] X_19457398_SNP [dm6]	G	A	2.264e^-4	0.961	INTRON kek5
3R	17528356	3R_17528356_SNP [dm3] 3R_21702634_SNP [dm6]	G	C	2.268e^-4	0.961	INTRON CG31176
3R	11638233	3R_11638233_SNP [dm3] 3R_15812511_SNP [dm6]	T	A	2.271e^-4	0.961	UPSTREAM CR45211 INTRON alpha-Man-IIb
2R	1872964	2R_1872964_SNP [dm3] 2R_5985459_SNP [dm6]	G	T	2.271e^-4	0.961	INTRON Src42A
2L	8682538	2L_8682538_SNP [dm3] 2L_8682538_SNP [dm6]	C	A	2.281e^-4	0.961	NON_SYNONYMOUS_CODING CG9289 UPSTREAM tRNA:CR31890	TF binding site mE1_TFBS_cad
2R	13017777	2R_13017777_SNP [dm3] 2R_17130272_SNP [dm6]	T	A	2.283e^-4	0.961	UTR_3_PRIME Cda9 DOWNSTREAM CR45273
X	9601418	X_9601418_SNP [dm3] X_9707385_SNP [dm6]	C	T	2.295e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	10886517	3L_10886517_SNP [dm3] 3L_10893417_SNP [dm6]	G	A	2.297e^-4	0.961	UPSTREAM Cpr67Fb DOWNSTREAM Cpr67Fa2 & 1 other INTERGENIC
3L	14499614	3L_14499614_SNP [dm3] 3L_14506514_SNP [dm6]	C	T	2.310e^-4	0.961	INTRON bbg
2L	13119586	2L_13119586_SNP [dm3] 2L_13119586_SNP [dm6]	A	G	2.318e^-4	0.961	UPSTREAM CR44198 INTRON CG43050	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13119592	2L_13119592_SNP [dm3] 2L_13119592_SNP [dm6]	T	G	2.318e^-4	0.961	UPSTREAM CR44198 INTRON CG43050	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	18467670	X_18467670_SNP [dm3] X_18573637_SNP [dm6]	C	A	2.320e^-4	0.961	DOWNSTREAM Bx INTERGENIC
3R	15677888	3R_15677888_SNP [dm3] 3R_19852166_SNP [dm6]	G	A	2.323e^-4	0.961	SYNONYMOUS_CODING CG4662	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	2722034	2L_2722034_SNP [dm3] 2L_2722034_SNP [dm6]	G	T	2.326e^-4	0.961	INTERGENIC
3L	18866829	3L_18866829_SNP [dm3] 3L_18873729_SNP [dm6]	C	A	2.339e^-4	0.961	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3L	18866988	3L_18866988_SNP [dm3] 3L_18873888_SNP [dm6]	A	G	2.339e^-4	0.961	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
3R	11302238	3R_11302238_SNP [dm3] 3R_15476516_SNP [dm6]	C	A	2.341e^-4	0.961	UPSTREAM AdamTS-A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	22761261	3R_22761261_SNP [dm3] 3R_26935539_SNP [dm6]	T	A	2.347e^-4	0.961	INTRON sda
2L	6778024	2L_6778024_SNP [dm3] 2L_6778024_SNP [dm6]	G	T	2.357e^-4	0.961	UTR_3_PRIME CG17378 DOWNSTREAM nrv1 & 1 other
3L	14334222	3L_14334222_SNP [dm3] 3L_14341122_SNP [dm6]	A	C	2.357e^-4	0.961	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	13018368	2R_13018368_SNP [dm3] 2R_17130863_SNP [dm6]	C	G	2.382e^-4	0.961	DOWNSTREAM CR45273 & 1 other INTERGENIC
2L	18588927	2L_18588927_SNP [dm3] 2L_18588927_SNP [dm6]	C	A	2.383e^-4	0.961	INTRON Pde11
2R	13727156	2R_13727156_SNP [dm3] 2R_17839651_SNP [dm6]	C	T	2.388e^-4	0.961	SYNONYMOUS_CODING grh	TF binding site mE1_TFBS_inv
3R	26866448	3R_26866448_SNP [dm3] 3R_31040726_SNP [dm6]	G	A	2.390e^-4	0.961	INTRON CanA1
3R	19020654	3R_19020654_DEL [dm3] 3R_23194932_DEL [dm6]	AAG	T	2.394e^-4	0.961	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	12054320	3R_12054320_SNP [dm3] 3R_16228598_SNP [dm6]	C	A	2.399e^-4	0.961	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	3100589	X_3100589_SNP [dm3] X_3206556_SNP [dm6]	A	T	2.402e^-4	0.961	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9838610	2R_9838610_SNP [dm3] 2R_13951105_SNP [dm6]	A	G	2.403e^-4	0.961	INTRON AGO1
2R	14495045	2R_14495045_SNP [dm3] 2R_18607540_SNP [dm6]	C	T	2.419e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	3720237	3L_3720237_SNP [dm3] 3L_3720237_SNP [dm6]	G	T	2.426e^-4	0.961	INTRON CG32264
3R	8719966	3R_8719966_SNP [dm3] 3R_12894244_SNP [dm6]	C	T	2.442e^-4	0.961	EXON CR33929
3R	25245828	3R_25245828_SNP [dm3] 3R_29420106_SNP [dm6]	T	C	2.443e^-4	0.961	INTRON Ptp99A
X	11824352	X_11824352_SNP [dm3] X_11930319_SNP [dm6]	T	C	2.454e^-4	0.961	DOWNSTREAM cac INTRON CG10362
X	11824361	X_11824361_SNP [dm3] X_11930328_SNP [dm6]	G	A	2.454e^-4	0.961	DOWNSTREAM cac INTRON CG10362
3R	8385321	3R_8385321_SNP [dm3] 3R_12559599_SNP [dm6]	A	C	2.455e^-4	0.961	INTRON Octbeta2R
3L	4717489	3L_4717489_SNP [dm3] 3L_4717489_SNP [dm6]	C	T	2.477e^-4	0.961	INTRON RhoGEF64C
2L	18579911	2L_18579911_SNP [dm3] 2L_18579911_SNP [dm6]	A	T	2.477e^-4	0.961	INTRON Pde11
3L	5121099	3L_5121099_SNP [dm3] 3L_5127999_SNP [dm6]	T	G	2.494e^-4	0.961	INTERGENIC
2L	10875738	2L_10875738_SNP [dm3] 2L_10875738_SNP [dm6]	C	A	2.507e^-4	0.961	INTERGENIC
2R	8821497	2R_8821497_SNP [dm3] 2R_12933992_SNP [dm6]	T	C	2.521e^-4	0.961	UTR_5_PRIME CG17019 DOWNSTREAM CG13322	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	15896400	3R_15896400_SNP [dm3] 3R_20070678_SNP [dm6]	T	A	2.521e^-4	0.961	INTERGENIC
3L	7997066	3L_7997066_DEL [dm3] 3L_8003966_DEL [dm6]	CAC	C	2.523e^-4	0.961	INTRON nmo
2R	17396974	2R_17396974_SNP [dm3] 2R_21509469_SNP [dm6]	G	A	2.524e^-4	0.961	INTRON MESK2
3R	19900630	3R_19900630_SNP [dm3] 3R_24074908_SNP [dm6]	A	G	2.531e^-4	0.961	INTRON 4EHP
3R	15750094	3R_15750094_INS [dm3] 3R_19924372_INS [dm6]	G	GCTTT	2.533e^-4	0.961	INTRON CG4462
2R	21086104	2R_21086104_DEL [dm3] 2R_25198581_DEL [dm6]	CGGC	C	2.542e^-4	0.961	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8719923	3R_8719923_INS [dm3] 3R_12894201_INS [dm6]	T	TC	2.546e^-4	0.961	INTRON CR33929
3L	16177154	3L_16177154_INS [dm3] 3L_16184054_INS [dm6]	T	TT	2.546e^-4	0.961	INTERGENIC
X	16961156	X_16961156_SNP [dm3] X_17067123_SNP [dm6]	G	A	2.548e^-4	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
3L	4661905	3L_4661905_SNP [dm3] 3L_4661905_SNP [dm6]	G	A	2.553e^-4	0.961	INTRON axo
2R	5525191	2R_5525191_SNP [dm3] 2R_9637686_SNP [dm6]	G	A	2.555e^-4	0.961	UPSTREAM CR44070 INTRON Mmp2
3R	15144176	3R_15144176_SNP [dm3] 3R_19318454_SNP [dm6]	T	G	2.556e^-4	0.961	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
X	4613016	X_4613016_SNP [dm3] X_4718983_SNP [dm6]	T	C	2.573e^-4	0.961	INTRON Proc-R
2R	10840216	2R_10840216_SNP [dm3] 2R_14952711_SNP [dm6]	A	G	2.575e^-4	0.961	INTRON aPKC
2L	18609989	2L_18609989_SNP [dm3] 2L_18609989_SNP [dm6]	T	C	2.588e^-4	0.961	DOWNSTREAM CG10333 INTRON Atac2
3R	17181792	3R_17181792_SNP [dm3] 3R_21356070_SNP [dm6]	G	A	2.589e^-4	0.961	SYNONYMOUS_CODING pre-mod_mdg4_-B & 1 other UTR_3_PRIME pre-mod_mdg4_-J & 4 others DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
3L	11136385	3L_11136385_SNP [dm3] 3L_11143285_SNP [dm6]	A	T	2.592e^-4	0.961	INTRON CG32082
3L	5120695	3L_5120695_SNP [dm3] 3L_5127595_SNP [dm6]	C	T	2.602e^-4	0.961	INTERGENIC
2R	14415637	2R_14415637_SNP [dm3] 2R_18528132_SNP [dm6]	C	A	2.603e^-4	0.961	INTRON CG10924	TF binding site mE1_TFBS_Trl
2R	13017772	2R_13017772_SNP [dm3] 2R_17130267_SNP [dm6]	A	T	2.633e^-4	0.961	UTR_3_PRIME Cda9 DOWNSTREAM CR45273
3R	16366975	3R_16366975_SNP [dm3] 3R_20541253_SNP [dm6]	C	G	2.636e^-4	0.961	SYNONYMOUS_CODING Stat92E	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_sens
3R	8719965	3R_8719965_SNP [dm3] 3R_12894243_SNP [dm6]	G	C	2.638e^-4	0.961	EXON CR33929
3R	23764762	3R_23764762_SNP [dm3] 3R_27939040_SNP [dm6]	T	C	2.643e^-4	0.961	SYNONYMOUS_CODING CG5514	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	5290129	2R_5290129_SNP [dm3] 2R_9402624_SNP [dm6]	T	C	2.648e^-4	0.961	INTRON wun	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20854635	2L_20854635_SNP [dm3] 2L_20854635_SNP [dm6]	A	C	2.648e^-4	0.961	INTRON twit
3L	5994676	3L_5994676_SNP [dm3] 3L_6001576_SNP [dm6]	C	T	2.660e^-4	0.961	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15392109	2R_15392109_DEL [dm3] 2R_19504604_DEL [dm6]	TCGT	T	2.663e^-4	0.961	UPSTREAM CR44472 DOWNSTREAM CG11007 INTERGENIC
3R	13266458	3R_13266458_SNP [dm3] 3R_17440736_SNP [dm6]	C	G	2.684e^-4	0.961	UPSTREAM CG14331 INTRON CG5873
2L	9170689	2L_9170689_SNP [dm3] 2L_9170689_SNP [dm6]	A	C	2.687e^-4	0.961	INTRON tai
3R	26888441	3R_26888441_SNP [dm3] 3R_31062719_SNP [dm6]	A	G	2.702e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	7934359	2R_7934359_SNP [dm3] 2R_12046854_SNP [dm6]	T	C	2.705e^-4	0.961	INTRON Drep-1
2L	17183916	2L_17183916_SNP [dm3] 2L_17183916_SNP [dm6]	G	A	2.706e^-4	0.961	DOWNSTREAM CG31750 INTERGENIC
2R	9683764	2R_9683764_SNP [dm3] 2R_13796259_SNP [dm6]	A	G	2.717e^-4	0.961	INTRON Cpr50Cb
2L	13847143	2L_13847143_SNP [dm3] 2L_13847143_SNP [dm6]	A	T	2.729e^-4	0.961	UPSTREAM CG7953 INTRON CenG1A & 1 other	TF binding site mE1_TFBS_cad
3R	22917959	3R_22917959_SNP [dm3] 3R_27092237_SNP [dm6]	C	A	2.736e^-4	0.961	UPSTREAM CG14258 INTERGENIC
3L	7997071	3L_7997071_SNP [dm3] 3L_8003971_SNP [dm6]	A	G	2.738e^-4	0.961	INTRON nmo
3L	4147762	3L_4147762_SNP [dm3] 3L_4147762_SNP [dm6]	G	A	2.739e^-4	0.961	UPSTREAM CG1299 INTERGENIC
2R	13018379	2R_13018379_SNP [dm3] 2R_17130874_SNP [dm6]	T	C	2.775e^-4	0.961	DOWNSTREAM CR45273 & 1 other INTERGENIC
3R	25446281	3R_25446281_INS [dm3] 3R_29620559_INS [dm6]	A	ATGA	2.775e^-4	0.961	UTR_3_PRIME CG1907	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	27100327	3R_27100327_SNP [dm3] 3R_31274605_SNP [dm6]	A	G	2.780e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4614301	3R_4614301_SNP [dm3] 3R_8788579_SNP [dm6]	A	T	2.787e^-4	0.961	INTRON Pif1B & 1 other
3R	8431815	3R_8431815_SNP [dm3] 3R_12606093_SNP [dm6]	T	G	2.792e^-4	0.961	INTERGENIC
3R	17064851	3R_17064851_SNP [dm3] 3R_21239129_SNP [dm6]	C	T	2.800e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
3L	18345425	3L_18345425_SNP [dm3] 3L_18352325_SNP [dm6]	C	T	2.800e^-4	0.961	INTERGENIC
2R	15823993	2R_15823993_SNP [dm3] 2R_19936488_SNP [dm6]	A	T	2.812e^-4	0.961	INTERGENIC
2R	15165789	2R_15165789_SNP [dm3] 2R_19278284_SNP [dm6]	A	G	2.813e^-4	0.961	SYNONYMOUS_CODING rib	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17889663	3R_17889663_SNP [dm3] 3R_22063941_SNP [dm6]	C	T	2.828e^-4	0.961	INTRON how
3R	17528352	3R_17528352_SNP [dm3] 3R_21702630_SNP [dm6]	C	A	2.841e^-4	0.961	INTRON CG31176
2L	7221432	2L_7221432_SNP [dm3] 2L_7221432_SNP [dm6]	G	T	2.846e^-4	0.961	NON_SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_sens
2L	9638727	2L_9638727_SNP [dm3] 2L_9638727_SNP [dm6]	C	T	2.854e^-4	0.961	INTRON Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	14723542	2R_14723542_INS [dm3] 2R_18836037_INS [dm6]	T	TTTAT	2.861e^-4	0.961	DOWNSTREAM CG15099 INTRON CG15083
3R	26494115	3R_26494115_SNP [dm3] 3R_30668393_SNP [dm6]	T	A	2.881e^-4	0.961	INTERGENIC
3R	16293613	3R_16293613_DEL [dm3] 3R_20467891_DEL [dm6]	CTCTGGT	GCAAC	2.883e^-4	0.961	INTRON Gfrl
2L	17185333	2L_17185333_SNP [dm3] 2L_17185333_SNP [dm6]	G	C	2.886e^-4	0.961	INTERGENIC
3R	9668168	3R_9668168_SNP [dm3] 3R_13842446_SNP [dm6]	T	A	2.890e^-4	0.961	INTERGENIC
2L	17228505	2L_17228505_SNP [dm3] 2L_17228505_SNP [dm6]	A	G	2.891e^-4	0.961	INTRON beat-IIIc
X	10221245	X_10221245_SNP [dm3] X_10327212_SNP [dm6]	G	A	2.897e^-4	0.961	NON_SYNONYMOUS_CODING CG2909	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	15824243	2R_15824243_INS [dm3] 2R_19936738_INS [dm6]	C	CCA	2.901e^-4	0.961	INTERGENIC
2R	16029980	2R_16029980_SNP [dm3] 2R_20142475_SNP [dm6]	T	C	2.920e^-4	0.961	INTERGENIC
3R	25245921	3R_25245921_SNP [dm3] 3R_29420199_SNP [dm6]	T	G	2.925e^-4	0.961	INTRON Ptp99A
2L	9661762	2L_9661762_INS [dm3] 2L_9661762_INS [dm6]	T	TAT	2.929e^-4	0.961	INTERGENIC
2R	16736318	2R_16736318_SNP [dm3] 2R_20848813_SNP [dm6]	C	T	2.939e^-4	0.961	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2R	16030076	2R_16030076_DEL [dm3] 2R_20142571_DEL [dm6]	ATG	A	2.946e^-4	0.961	INTERGENIC
3L	1851246	3L_1851246_DEL [dm3] 3L_1851246_DEL [dm6]	TCT	T	2.950e^-4	0.961	UTR_3_PRIME CG13936 DOWNSTREAM CG13936
4	106805	4_106805_DEL [dm3] 4_86179_DEL [dm6]	ATTAACACAGA...	A	2.956e^-4	0.961	INTRON pan	TF binding site BDTNP1_TFBS_dl
3L	4096026	3L_4096026_SNP [dm3] 3L_4096026_SNP [dm6]	G	A	2.963e^-4	0.961	SYNONYMOUS_CODING CG14995 UTR_3_PRIME CG14995 INTRON CG14995	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3771282	2R_3771282_SNP [dm3] 2R_7883777_SNP [dm6]	C	T	2.965e^-4	0.961	INTRON Dgk
3R	19029609	3R_19029609_SNP [dm3] 3R_23203887_SNP [dm6]	T	C	2.965e^-4	0.961	SYNONYMOUS_CODING fzo INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7997124	3L_7997124_SNP [dm3] 3L_8004024_SNP [dm6]	G	A	2.969e^-4	0.961	INTRON nmo
X	16583243	X_16583243_SNP [dm3] X_16689210_SNP [dm6]	A	C	2.975e^-4	0.961	INTRON Sep4
2R	17390123	2R_17390123_SNP [dm3] 2R_21502618_SNP [dm6]	G	A	2.978e^-4	0.961	UPSTREAM TAF1C-like INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	8306619	3L_8306619_SNP [dm3] 3L_8313519_SNP [dm6]	T	C	2.981e^-4	0.961	INTRON CG7185
2L	15740669	2L_15740669_SNP [dm3] 2L_15740669_SNP [dm6]	G	C	2.982e^-4	0.961	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5994632	3L_5994632_SNP [dm3] 3L_6001532_SNP [dm6]	T	G	2.985e^-4	0.961	INTRON PVRAP	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	5121037	3L_5121037_SNP [dm3] 3L_5127937_SNP [dm6]	G	C	2.991e^-4	0.961	INTERGENIC
3L	1923556	3L_1923556_SNP [dm3] 3L_1923556_SNP [dm6]	C	A	3.001e^-4	0.961	INTRON Dbx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12122281	2R_12122281_SNP [dm3] 2R_16234776_SNP [dm6]	C	G	3.009e^-4	0.961	NON_SYNONYMOUS_CODING CG7786 DOWNSTREAM CG15701	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20135821	2L_20135821_SNP [dm3] 2L_20135821_SNP [dm6]	G	C	3.015e^-4	0.961	UPSTREAM CG10651 INTERGENIC
2R	17615078	2R_17615078_SNP [dm3] 2R_21727573_SNP [dm6]	C	A	3.021e^-4	0.961	EXON CR44750	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	13331863	2R_13331863_SNP [dm3] 2R_17444358_SNP [dm6]	G	A	3.025e^-4	0.961	NON_SYNONYMOUS_CODING EDTP DOWNSTREAM mthl4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	8625851	3R_8625851_SNP [dm3] 3R_12800129_SNP [dm6]	C	T	3.060e^-4	0.961	INTERGENIC
3R	8719975	3R_8719975_SNP [dm3] 3R_12894253_SNP [dm6]	T	A	3.066e^-4	0.961	EXON CR33929
2L	11966349	2L_11966349_SNP [dm3] 2L_11966349_SNP [dm6]	G	C	3.070e^-4	0.961	INTRON CR43314	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13676230	2L_13676230_SNP [dm3] 2L_13676230_SNP [dm6]	T	G	3.072e^-4	0.961	DOWNSTREAM CG31814 INTERGENIC
3R	8433419	3R_8433419_SNP [dm3] 3R_12607697_SNP [dm6]	C	T	3.073e^-4	0.961	INTERGENIC
2R	17371258	2R_17371258_SNP [dm3] 2R_21483753_SNP [dm6]	G	A	3.075e^-4	0.961	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16961137	X_16961137_SNP [dm3] X_17067104_SNP [dm6]	A	G	3.099e^-4	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
2R	18795941	2R_18795941_SNP [dm3] 2R_22908418_SNP [dm6]	C	T	3.105e^-4	0.961	INTRON nahoda
X	14137822	X_14137822_SNP [dm3] X_14243789_SNP [dm6]	C	T	3.110e^-4	0.961	UTR_5_PRIME CG32599 UPSTREAM mRNA-cap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16114121	2L_16114121_SNP [dm3] 2L_16114121_SNP [dm6]	A	C	3.112e^-4	0.961	INTERGENIC
3L	12055201	3L_12055201_SNP [dm3] 3L_12062101_SNP [dm6]	C	T	3.117e^-4	0.961	INTRON rols
2R	14518272	2R_14518272_SNP [dm3] 2R_18630767_SNP [dm6]	T	C	3.127e^-4	0.961	SYNONYMOUS_CODING CG5482
3R	19020666	3R_19020666_DEL [dm3] 3R_23194944_DEL [dm6]	GGA	G	3.142e^-4	0.961	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	16042077	2R_16042077_SNP [dm3] 2R_20154572_SNP [dm6]	A	G	3.142e^-4	0.961	INTERGENIC
2R	17396672	2R_17396672_SNP [dm3] 2R_21509167_SNP [dm6]	G	A	3.146e^-4	0.961	INTRON MESK2
3R	18194805	3R_18194805_SNP [dm3] 3R_22369083_SNP [dm6]	G	T	3.148e^-4	0.961	UPSTREAM PyK INTRON PyK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	5527035	2R_5527035_SNP [dm3] 2R_9639530_SNP [dm6]	C	G	3.148e^-4	0.961	INTRON Mmp2
3L	3045461	3L_3045461_SNP [dm3] 3L_3045461_SNP [dm6]	C	G	3.149e^-4	0.961	INTRON scramb2	TF binding site mE1_TFBS_HSA
2R	14495188	2R_14495188_SNP [dm3] 2R_18607683_SNP [dm6]	C	T	3.155e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	8340895	2L_8340895_SNP [dm3] 2L_8340895_SNP [dm6]	C	T	3.156e^-4	0.961	SYNONYMOUS_CODING CG14274
3R	23267126	3R_23267126_INS [dm3] 3R_27441404_INS [dm6]	T	CGTGTGTGC	3.156e^-4	0.961	UPSTREAM CG44290 DOWNSTREAM CG43447 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2847224	3L_2847224_SNP [dm3] 3L_2847224_SNP [dm6]	G	T	3.162e^-4	0.961	INTRON CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13545016	2R_13545016_SNP [dm3] 2R_17657511_SNP [dm6]	C	T	3.165e^-4	0.961	INTRON CCHa1-R	TF binding site mE1_TFBS_sens
3R	15027322	3R_15027322_SNP [dm3] 3R_19201600_SNP [dm6]	C	A	3.167e^-4	0.961	DOWNSTREAM CG31475 INTERGENIC
2L	14653804	2L_14653804_SNP [dm3] 2L_14653804_SNP [dm6]	A	G	3.170e^-4	0.961	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16177162	3L_16177162_SNP [dm3] 3L_16184062_SNP [dm6]	T	A	3.170e^-4	0.961	INTERGENIC
X	6608043	X_6608043_SNP [dm3] X_6714010_SNP [dm6]	A	G	3.193e^-4	0.961	SYNONYMOUS_CODING CG14441	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3991941	2L_3991941_SNP [dm3] 2L_3991941_SNP [dm6]	T	C	3.194e^-4	0.961	UPSTREAM fred INTERGENIC	TF binding site mE1_TFBS_Trl
3L	6845478	3L_6845478_INS [dm3] 3L_6852378_INS [dm6]	T	TCA	3.206e^-4	0.961	INTERGENIC
2L	17185295	2L_17185295_SNP [dm3] 2L_17185295_SNP [dm6]	A	G	3.217e^-4	0.961	INTERGENIC
2R	8822895	2R_8822895_SNP [dm3] 2R_12935390_SNP [dm6]	T	C	3.231e^-4	0.961	SYNONYMOUS_CODING CG13322	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_sens
2L	17200760	2L_17200760_SNP [dm3] 2L_17200760_SNP [dm6]	G	T	3.240e^-4	0.961	INTRON beat-IIIc
2R	2398121	2R_2398121_SNP [dm3] 2R_6510616_SNP [dm6]	A	G	3.254e^-4	0.961	UPSTREAM CR45127 INTRON jing	TF binding site BDTNP1_TFBS_dl
2L	17813308	2L_17813308_SNP [dm3] 2L_17813308_SNP [dm6]	T	C	3.256e^-4	0.961	UPSTREAM CG42830 INTRON CadN2
2L	2828307	2L_2828307_SNP [dm3] 2L_2828307_SNP [dm6]	T	A	3.264e^-4	0.961	INTRON Duox
3L	1103083	3L_1103083_SNP [dm3] 3L_1103083_SNP [dm6]	C	G	3.269e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	17141240	2R_17141240_SNP [dm3] 2R_21253735_SNP [dm6]	T	C	3.273e^-4	0.961	INTERGENIC
2R	19410325	2R_19410325_SNP [dm3] 2R_23522802_SNP [dm6]	G	A	3.282e^-4	0.961	INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_sens
2L	11319502	2L_11319502_SNP [dm3] 2L_11319502_SNP [dm6]	T	C	3.283e^-4	0.961	DOWNSTREAM CR44583 INTERGENIC
3R	22761595	3R_22761595_SNP [dm3] 3R_26935873_SNP [dm6]	C	T	3.283e^-4	0.961	INTRON sda
2R	6460891	2R_6460891_SNP [dm3] 2R_10573386_SNP [dm6]	T	C	3.298e^-4	0.961	INTRON psq
3L	15575694	3L_15575694_SNP [dm3] 3L_15582594_SNP [dm6]	T	C	3.300e^-4	0.961	NON_SYNONYMOUS_CODING CG12301	TF binding site mE1_TFBS_sens
3R	13307138	3R_13307138_SNP [dm3] 3R_17481416_SNP [dm6]	C	T	3.303e^-4	0.961	INTRON Dscam3
2L	10717978	2L_10717978_SNP [dm3] 2L_10717978_SNP [dm6]	T	G	3.303e^-4	0.961	INTERGENIC
3R	26889061	3R_26889061_DEL [dm3] 3R_31063339_DEL [dm6]	AT	A	3.308e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16736348	2R_16736348_SNP [dm3] 2R_20848843_SNP [dm6]	G	A	3.311e^-4	0.961	SYNONYMOUS_CODING CG17999	TF binding site mE1_TFBS_chinmo
2L	15515887	2L_15515887_SNP [dm3] 2L_15515887_SNP [dm6]	T	G	3.316e^-4	0.961	EXON CR44864
3L	6841575	3L_6841575_SNP [dm3] 3L_6848475_SNP [dm6]	G	A	3.326e^-4	0.961	INTERGENIC
3L	722562	3L_722562_SNP [dm3] 3L_722562_SNP [dm6]	A	T	3.335e^-4	0.961	INTERGENIC
X	13848767	X_13848767_SNP [dm3] X_13954734_SNP [dm6]	A	T	3.337e^-4	0.961	UPSTREAM CG11068 INTRON mamo	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_Kr
3R	17526488	3R_17526488_SNP [dm3] 3R_21700766_SNP [dm6]	G	A	3.340e^-4	0.961	INTRON CG31176
2L	17477389	2L_17477389_SNP [dm3] 2L_17477389_SNP [dm6]	A	T	3.367e^-4	0.961	INTRON Aac11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	5080999	3L_5080999_SNP [dm3] 3L_5080999_SNP [dm6]	A	C	3.370e^-4	0.961	INTERGENIC
2L	2828272	2L_2828272_SNP [dm3] 2L_2828272_SNP [dm6]	T	A	3.386e^-4	0.961	INTRON Duox
3L	4697037	3L_4697037_SNP [dm3] 3L_4697037_SNP [dm6]	G	C	3.396e^-4	0.961	UPSTREAM CG13713 INTRON RhoGEF64C	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	6658130	2R_6658130_SNP [dm3] 2R_10770625_SNP [dm6]	C	A	3.401e^-4	0.961	INTRON CG33144
3L	18853326	3L_18853326_SNP [dm3] 3L_18860226_SNP [dm6]	A	G	3.401e^-4	0.961	UPSTREAM mir-315 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4495426	2L_4495426_SNP [dm3] 2L_4495426_SNP [dm6]	G	A	3.402e^-4	0.961	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6689969	3L_6689969_SNP [dm3] 3L_6696869_SNP [dm6]	C	T	3.404e^-4	0.961	INTRON SP1173
3L	18854107	3L_18854107_SNP [dm3] 3L_18861007_SNP [dm6]	C	T	3.417e^-4	0.961	DOWNSTREAM mir-315 EXON mir-315	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5524712	2R_5524712_SNP [dm3] 2R_9637207_SNP [dm6]	A	G	3.436e^-4	0.961	INTRON Mmp2 EXON CR44070
3R	8719982	3R_8719982_SNP [dm3] 3R_12894260_SNP [dm6]	G	T	3.439e^-4	0.961	EXON CR33929
3L	17132449	3L_17132449_SNP [dm3] 3L_17139349_SNP [dm6]	A	G	3.450e^-4	0.961	INTRON Rbp6
2L	18873395	2L_18873395_SNP [dm3] 2L_18873395_SNP [dm6]	G	A	3.463e^-4	0.961	INTRON tup	TF binding site BDTNP1_TFBS_dl
3R	21852480	3R_21852480_SNP [dm3] 3R_26026758_SNP [dm6]	C	T	3.464e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2L	661223	2L_661223_SNP [dm3] 2L_661223_SNP [dm6]	G	T	3.478e^-4	0.961	INTRON ds	TF binding site mE1_TFBS_HSA
3L	14499287	3L_14499287_SNP [dm3] 3L_14506187_SNP [dm6]	C	A	3.486e^-4	0.961	INTRON bbg
2R	20411061	2R_20411061_SNP [dm3] 2R_24523538_SNP [dm6]	G	T	3.498e^-4	0.961	UTR_3_PRIME CG4612 DOWNSTREAM CG4612
3R	24505038	3R_24505038_SNP [dm3] 3R_28679316_SNP [dm6]	C	T	3.499e^-4	0.961	INTRON CG9990
2R	18258494	2R_18258494_SNP [dm3] 2R_22370989_SNP [dm6]	T	C	3.507e^-4	0.961	INTRON Liprin-gamma
2L	1472324	2L_1472324_SNP [dm3] 2L_1472324_SNP [dm6]	G	A	3.519e^-4	0.961	INTERGENIC
3L	6927583	3L_6927583_SNP [dm3] 3L_6934483_SNP [dm6]	C	T	3.520e^-4	0.961	INTRON CG14820
3L	6927587	3L_6927587_SNP [dm3] 3L_6934487_SNP [dm6]	T	C	3.520e^-4	0.961	SPLICE_SITE_REGION CG14820 SYNONYMOUS_CODING CG14820
2L	1472336	2L_1472336_SNP [dm3] 2L_1472336_SNP [dm6]	C	T	3.522e^-4	0.961	INTERGENIC
3R	13464813	3R_13464813_SNP [dm3] 3R_17639091_SNP [dm6]	T	C	3.543e^-4	0.961	INTRON CG43175 EXON CR45222
3R	22758627	3R_22758627_SNP [dm3] 3R_26932905_SNP [dm6]	G	C	3.555e^-4	0.961	INTRON sda
2L	18937067	2L_18937067_SNP [dm3] 2L_18937067_SNP [dm6]	T	C	3.562e^-4	0.961	INTRON ssp3	TF binding site BDTNP1_TFBS_dl
2R	16348712	2R_16348712_DEL [dm3] 2R_20461207_DEL [dm6]	ATCGGCCTGAAAA...	A	3.565e^-4	0.961	INTRON CG12484
X	3100464	X_3100464_DEL [dm3] X_3206431_DEL [dm6]	AA	A	3.567e^-4	0.961	INTRON dnc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4981761	2L_4981761_SNP [dm3] 2L_4981761_SNP [dm6]	G	A	3.569e^-4	0.961	UTR_5_PRIME CG34126 UPSTREAM CG8892	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20602189	3R_20602189_SNP [dm3] 3R_24776467_SNP [dm6]	C	G	3.571e^-4	0.961	INTRON CG42331	TF binding site mE1_TFBS_cad
2L	8813515	2L_8813515_SNP [dm3] 2L_8813515_SNP [dm6]	T	C	3.577e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_bab1
3L	5232229	3L_5232229_SNP [dm3] 3L_5239129_SNP [dm6]	A	G	3.580e^-4	0.961	INTRON shep
3R	17184877	3R_17184877_SNP [dm3] 3R_21359155_SNP [dm6]	A	T	3.580e^-4	0.961	UTR_5_PRIME pre-mod_mdg4_-L & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	17184974	3R_17184974_SNP [dm3] 3R_21359252_SNP [dm6]	C	G	3.580e^-4	0.961	UTR_5_PRIME pre-mod_mdg4_-L & 1 other UPSTREAM pre-mod_mdg4_-Z & 1 other INTRON mod_mdg4_ & 4 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	14297395	3L_14297395_SNP [dm3] 3L_14304295_SNP [dm6]	C	A	3.581e^-4	0.961	INTRON fz	TF binding site BDTNP1_TFBS_z
2R	13330955	2R_13330955_SNP [dm3] 2R_17443450_SNP [dm6]	T	A	3.588e^-4	0.961	DOWNSTREAM CG18467 INTRON EDTP
2R	15823905	2R_15823905_SNP [dm3] 2R_19936400_SNP [dm6]	T	C	3.594e^-4	0.961	INTERGENIC
3R	25853901	3R_25853901_SNP [dm3] 3R_30028179_SNP [dm6]	C	T	3.600e^-4	0.961	INTRON Axn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18105033	3L_18105033_SNP [dm3] 3L_18111933_SNP [dm6]	T	A	3.616e^-4	0.961	NON_SYNONYMOUS_CODING mus304
2L	20723806	2L_20723806_SNP [dm3] 2L_20723806_SNP [dm6]	C	T	3.629e^-4	0.961	DOWNSTREAM CG9316 INTERGENIC
2L	14653779	2L_14653779_SNP [dm3] 2L_14653779_SNP [dm6]	G	T	3.635e^-4	0.961	INTRON osp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18562244	2L_18562244_SNP [dm3] 2L_18562244_SNP [dm6]	C	G	3.647e^-4	0.961	INTRON Pde11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3330668	3R_3330668_SNP [dm3] 3R_7504946_SNP [dm6]	A	G	3.647e^-4	0.961	UTR_5_PRIME alpha-Est9
3L	1184964	3L_1184964_SNP [dm3] 3L_1184964_SNP [dm6]	G	T	3.650e^-4	0.961	INTERGENIC
3L	1849022	3L_1849022_SNP [dm3] 3L_1849022_SNP [dm6]	G	A	3.658e^-4	0.961	INTERGENIC
2L	15740763	2L_15740763_SNP [dm3] 2L_15740763_SNP [dm6]	T	A	3.666e^-4	0.961	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17527780	3R_17527780_SNP [dm3] 3R_21702058_SNP [dm6]	T	C	3.674e^-4	0.961	INTRON CG31176
3L	10792811	3L_10792811_SNP [dm3] 3L_10799711_SNP [dm6]	G	T	3.678e^-4	0.961	INTERGENIC
2R	12580759	2R_12580759_SNP [dm3] 2R_16693254_SNP [dm6]	G	C	3.687e^-4	0.961	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3R	4621230	3R_4621230_SNP [dm3] 3R_8795508_SNP [dm6]	T	C	3.703e^-4	0.961	NON_SYNONYMOUS_CODING Ir85a INTRON Pif1A & 1 other	TF binding site mE1_TFBS_sens
2L	7110814	2L_7110814_SNP [dm3] 2L_7110814_SNP [dm6]	G	T	3.703e^-4	0.961	INTRON Pvf3
2R	7560317	2R_7560317_SNP [dm3] 2R_11672812_SNP [dm6]	T	C	3.705e^-4	0.961	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da
2L	1472421	2L_1472421_SNP [dm3] 2L_1472421_SNP [dm6]	T	G	3.705e^-4	0.961	INTERGENIC
3L	6845475	3L_6845475_SNP [dm3] 3L_6852375_SNP [dm6]	G	T	3.706e^-4	0.961	INTERGENIC
X	16968037	X_16968037_SNP [dm3] X_17074004_SNP [dm6]	T	G	3.716e^-4	0.961	INTRON CG8949
3R	26870298	3R_26870298_SNP [dm3] 3R_31044576_SNP [dm6]	G	T	3.719e^-4	0.961	INTRON CanA1 & 1 other
3R	15338864	3R_15338864_INS [dm3] 3R_19513142_INS [dm6]	A	AACA	3.721e^-4	0.961	INTRON Dys
3R	17718809	3R_17718809_SNP [dm3] 3R_21893087_SNP [dm6]	A	T	3.722e^-4	0.961	INTRON CG6678
3R	8431832	3R_8431832_SNP [dm3] 3R_12606110_SNP [dm6]	A	T	3.727e^-4	0.961	INTERGENIC
3R	23542701	3R_23542701_SNP [dm3] 3R_27716979_SNP [dm6]	A	G	3.728e^-4	0.961	INTERGENIC
3R	18760727	3R_18760727_SNP [dm3] 3R_22935005_SNP [dm6]	G	A	3.737e^-4	0.961	INTRON klg
3L	1363973	3L_1363973_DEL [dm3] 3L_1363973_DEL [dm6]	CC	C	3.751e^-4	0.961	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_HSA mE1_TFBS_Trl
3R	17039469	3R_17039469_SNP [dm3] 3R_21213747_SNP [dm6]	T	G	3.761e^-4	0.961	UTR_3_PRIME SNF4Agamma	TF binding site BDTNP1_TFBS_dl
2R	6460866	2R_6460866_SNP [dm3] 2R_10573361_SNP [dm6]	A	G	3.765e^-4	0.961	INTRON psq
2R	19573358	2R_19573358_SNP [dm3] 2R_23685835_SNP [dm6]	T	A	3.788e^-4	0.961	UPSTREAM l_2_efl INTRON St3
3R	17528255	3R_17528255_SNP [dm3] 3R_21702533_SNP [dm6]	A	G	3.792e^-4	0.961	INTRON CG31176
3R	10412346	3R_10412346_SNP [dm3] 3R_14586624_SNP [dm6]	T	C	3.797e^-4	0.961	INTRON stumps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	15515855	2L_15515855_SNP [dm3] 2L_15515855_SNP [dm6]	G	A	3.801e^-4	0.961	EXON CR44864
2R	17594366	2R_17594366_SNP [dm3] 2R_21706861_SNP [dm6]	G	T	3.806e^-4	0.961	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	1117671	3L_1117671_INS [dm3] 3L_1117671_INS [dm6]	A	AAAGA	3.807e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13615358	3L_13615358_SNP [dm3] 3L_13622258_SNP [dm6]	C	A	3.810e^-4	0.961	INTRON bru-3
2R	12580804	2R_12580804_SNP [dm3] 2R_16693299_SNP [dm6]	T	A	3.817e^-4	0.961	SYNONYMOUS_CODING CG5210 INTRON CG30463	TF binding site mE1_TFBS_cad
3R	22762093	3R_22762093_SNP [dm3] 3R_26936371_SNP [dm6]	T	A	3.821e^-4	0.961	INTRON sda
3R	22759694	3R_22759694_SNP [dm3] 3R_26933972_SNP [dm6]	A	T	3.827e^-4	0.961	INTRON sda
2L	3112237	2L_3112237_SNP [dm3] 2L_3112237_SNP [dm6]	T	A	3.830e^-4	0.961	UTR_5_PRIME toc INTRON toc
3L	8952352	3L_8952352_SNP [dm3] 3L_8959252_SNP [dm6]	C	T	3.832e^-4	0.961	INTRON CG13313
3R	23993770	3R_23993770_SNP [dm3] 3R_28168048_SNP [dm6]	G	T	3.836e^-4	0.961	INTRON CG34354
3R	19197165	3R_19197165_SNP [dm3] 3R_23371443_SNP [dm6]	A	C	3.849e^-4	0.961	DOWNSTREAM CR44322 INTERGENIC
2R	8592384	2R_8592384_SNP [dm3] 2R_12704879_SNP [dm6]	A	C	3.850e^-4	0.961	UPSTREAM CG42663 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	18800065	3L_18800065_SNP [dm3] 3L_18806965_SNP [dm6]	G	T	3.851e^-4	0.961	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	22287177	3R_22287177_INS [dm3] 3R_26461455_INS [dm6]	G	GGG	3.852e^-4	0.961	UPSTREAM CG5455 DOWNSTREAM CG14238 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18609977	2L_18609977_SNP [dm3] 2L_18609977_SNP [dm6]	A	G	3.855e^-4	0.961	DOWNSTREAM CG10333 INTRON Atac2
X	7874625	X_7874625_SNP [dm3] X_7980592_SNP [dm6]	G	A	3.870e^-4	0.961	INTRON sn
2L	9797658	2L_9797658_SNP [dm3] 2L_9797658_SNP [dm6]	A	G	3.870e^-4	0.961	INTRON nAChRalpha6	TF binding site mE1_TFBS_HSA
2L	15515883	2L_15515883_SNP [dm3] 2L_15515883_SNP [dm6]	G	C	3.880e^-4	0.961	EXON CR44864
2L	15515895	2L_15515895_INS [dm3] 2L_15515895_INS [dm6]	T	TTTTTGTAT	3.880e^-4	0.961	EXON CR44864
2L	15515897	2L_15515897_SNP [dm3] 2L_15515897_SNP [dm6]	A	G	3.880e^-4	0.961	EXON CR44864
2L	15515900	2L_15515900_SNP [dm3] 2L_15515900_SNP [dm6]	A	C	3.880e^-4	0.961	EXON CR44864
3L	18852658	3L_18852658_SNP [dm3] 3L_18859558_SNP [dm6]	A	G	3.882e^-4	0.961	INTERGENIC
3R	21749998	3R_21749998_SNP [dm3] 3R_25924276_SNP [dm6]	C	A	3.907e^-4	0.961	UTR_3_PRIME CCAP-R
3R	9866951	3R_9866951_SNP [dm3] 3R_14041229_SNP [dm6]	T	C	3.918e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	17335722	X_17335722_SNP [dm3] X_17441689_SNP [dm6]	T	G	3.927e^-4	0.961	INTRON CG12994
2R	11620355	2R_11620355_SNP [dm3] 2R_15732850_SNP [dm6]	G	A	3.928e^-4	0.961	NON_SYNONYMOUS_CODING CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	7226262	3L_7226262_SNP [dm3] 3L_7233162_SNP [dm6]	T	C	3.933e^-4	0.961	INTERGENIC
3L	5121038	3L_5121038_SNP [dm3] 3L_5127938_SNP [dm6]	A	C	3.933e^-4	0.961	INTERGENIC
2L	7214812	2L_7214812_DEL [dm3] 2L_7214812_DEL [dm6]	AA	A	3.946e^-4	0.961	INTRON CG13784
3R	15146543	3R_15146543_DEL [dm3] 3R_19320821_DEL [dm6]	AATACAATATTTC...	A	3.951e^-4	0.961	INTRON Dl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	1847996	3L_1847996_SNP [dm3] 3L_1847996_SNP [dm6]	C	T	3.966e^-4	0.961	INTERGENIC
2R	12974155	2R_12974155_SNP [dm3] 2R_17086650_SNP [dm6]	T	G	3.980e^-4	0.961	INTRON CG30460
3R	9668190	3R_9668190_SNP [dm3] 3R_13842468_SNP [dm6]	G	T	3.995e^-4	0.961	INTERGENIC
2R	6090381	2R_6090381_DEL [dm3] 2R_10202876_DEL [dm6]	TTTCCTT	T	4.020e^-4	0.961	INTERGENIC
3L	1968823	3L_1968823_SNP [dm3] 3L_1968823_SNP [dm6]	A	G	4.022e^-4	0.961	UPSTREAM CG1927 INTRON CG1927
2R	9456416	2R_9456416_SNP [dm3] 2R_13568911_SNP [dm6]	T	G	4.026e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Stat92E mE1_TFBS_ttk mE1_TFBS_zfh1
3R	17001480	3R_17001480_SNP [dm3] 3R_21175758_SNP [dm6]	G	A	4.027e^-4	0.961	INTRON SNF4Agamma
2L	18567023	2L_18567023_SNP [dm3] 2L_18567023_SNP [dm6]	G	T	4.041e^-4	0.961	INTRON Pde11
3L	3134872	3L_3134872_SNP [dm3] 3L_3134872_SNP [dm6]	G	T	4.046e^-4	0.961	UPSTREAM CG11537 INTRON CG11537
2L	3416455	2L_3416455_SNP [dm3] 2L_3416455_SNP [dm6]	A	C	4.054e^-4	0.961	UPSTREAM CG31952 INTRON pgant2
3L	722566	3L_722566_SNP [dm3] 3L_722566_SNP [dm6]	A	C	4.055e^-4	0.961	INTERGENIC
2R	19535082	2R_19535082_SNP [dm3] 2R_23647559_SNP [dm6]	G	A	4.063e^-4	0.961	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4049110	2L_4049110_SNP [dm3] 2L_4049110_SNP [dm6]	G	T	4.068e^-4	0.961	INTRON ed
2R	19411515	2R_19411515_SNP [dm3] 2R_23523992_SNP [dm6]	G	T	4.072e^-4	0.961	UTR_5_PRIME mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	19411527	2R_19411527_SNP [dm3] 2R_23524004_SNP [dm6]	G	A	4.072e^-4	0.961	UTR_5_PRIME mi UPSTREAM RabX1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	18180764	2L_18180764_SNP [dm3] 2L_18180764_SNP [dm6]	G	A	4.091e^-4	0.961	DOWNSTREAM CG7180 INTRON CG42750
3R	5117539	3R_5117539_SNP [dm3] 3R_9291817_SNP [dm6]	A	G	4.091e^-4	0.961	INTERGENIC
3R	24749130	3R_24749130_SNP [dm3] 3R_28923408_SNP [dm6]	T	G	4.093e^-4	0.961	NON_SYNONYMOUS_CODING CG11828 DOWNSTREAM Doa
3L	17768230	3L_17768230_SNP [dm3] 3L_17775130_SNP [dm6]	C	T	4.099e^-4	0.961	INTERGENIC
3L	17768247	3L_17768247_SNP [dm3] 3L_17775147_SNP [dm6]	G	A	4.099e^-4	0.961	INTERGENIC
2R	5525590	2R_5525590_SNP [dm3] 2R_9638085_SNP [dm6]	T	A	4.105e^-4	0.961	UPSTREAM CR44070 INTRON Mmp2
X	16961255	X_16961255_SNP [dm3] X_17067222_SNP [dm6]	T	G	4.108e^-4	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
X	16961259	X_16961259_SNP [dm3] X_17067226_SNP [dm6]	T	C	4.108e^-4	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
3L	10989438	3L_10989438_SNP [dm3] 3L_10996338_SNP [dm6]	G	A	4.115e^-4	0.961	INTRON klu
2R	17371249	2R_17371249_SNP [dm3] 2R_21483744_SNP [dm6]	C	A	4.126e^-4	0.961	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	13669251	X_13669251_SNP [dm3] X_13775218_SNP [dm6]	A	G	4.130e^-4	0.961	DOWNSTREAM rdgB INTRON rdgB	TF binding site BDTNP1_TFBS_dl
3R	19313600	3R_19313600_SNP [dm3] 3R_23487878_SNP [dm6]	C	T	4.136e^-4	0.961	SYNONYMOUS_CODING Ir94h
2R	14795518	2R_14795518_INS [dm3] 2R_18908013_INS [dm6]	A	AAA	4.142e^-4	0.961	DOWNSTREAM Vha100-3 INTRON sano
3L	1185129	3L_1185129_SNP [dm3] 3L_1185129_SNP [dm6]	T	G	4.151e^-4	0.961	INTERGENIC
2L	6473286	2L_6473286_SNP [dm3] 2L_6473286_SNP [dm6]	A	G	4.156e^-4	0.961	INTRON mmy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18595225	2L_18595225_SNP [dm3] 2L_18595225_SNP [dm6]	G	T	4.156e^-4	0.961	UTR_3_PRIME CG15160 DOWNSTREAM amos INTRON CG15160
2L	10092817	2L_10092817_SNP [dm3] 2L_10092817_SNP [dm6]	G	A	4.160e^-4	0.961	UPSTREAM CG13133 INTRON CG44153
3L	15917656	3L_15917656_INS [dm3] 3L_15924556_INS [dm6]	A	AA	4.169e^-4	0.961	UTR_5_PRIME sff	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	15523354	2R_15523354_DEL [dm3] 2R_19635849_DEL [dm6]	AA	A	4.170e^-4	0.961	UTR_3_PRIME CG42753 UPSTREAM CG18367
3L	6137175	3L_6137175_SNP [dm3] 3L_6144075_SNP [dm6]	A	G	4.184e^-4	0.961	UTR_3_PRIME Lcp65Ad UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad	TF binding site BDTNP1_TFBS_da
2L	1472581	2L_1472581_SNP [dm3] 2L_1472581_SNP [dm6]	C	T	4.185e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20339876	3R_20339876_SNP [dm3] 3R_24514154_SNP [dm6]	G	A	4.200e^-4	0.961	SYNONYMOUS_CODING nAChRbeta2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3L	17746184	3L_17746184_SNP [dm3] 3L_17753084_SNP [dm6]	C	T	4.204e^-4	0.961	INTRON Adgf-A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23685171	3R_23685171_SNP [dm3] 3R_27859449_SNP [dm6]	C	T	4.206e^-4	0.961	INTRON CG34353
3L	1851230	3L_1851230_SNP [dm3] 3L_1851230_SNP [dm6]	T	A	4.206e^-4	0.961	UTR_3_PRIME CG13936 DOWNSTREAM CG13936
2L	6473259	2L_6473259_INS [dm3] 2L_6473259_INS [dm6]	T	TAT	4.210e^-4	0.961	INTRON mmy	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20330289	X_20330289_SNP [dm3] X_20459262_SNP [dm6]	T	A	4.211e^-4	0.961	INTRON CG32506
3R	25326153	3R_25326153_SNP [dm3] 3R_29500431_SNP [dm6]	C	T	4.213e^-4	0.961	SYNONYMOUS_CODING Trc8	TF binding site mE1_TFBS_chinmo
2R	8592933	2R_8592933_SNP [dm3] 2R_12705428_SNP [dm6]	T	A	4.221e^-4	0.961	UTR_5_PRIME CG42663	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14495143	2R_14495143_SNP [dm3] 2R_18607638_SNP [dm6]	C	T	4.226e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2R	13331104	2R_13331104_SNP [dm3] 2R_17443599_SNP [dm6]	C	T	4.227e^-4	0.961	INTRON EDTP
X	4140479	X_4140479_SNP [dm3] X_4246446_SNP [dm6]	A	T	4.232e^-4	0.961	UPSTREAM Muc4B & 1 other INTERGENIC
2R	17393753	2R_17393753_SNP [dm3] 2R_21506248_SNP [dm6]	G	A	4.233e^-4	0.961	START_GAINED MESK2 UTR_5_PRIME MESK2 INTRON MESK2
3R	4669728	3R_4669728_SNP [dm3] 3R_8844006_SNP [dm6]	C	T	4.237e^-4	0.961	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11503274	2R_11503274_SNP [dm3] 2R_15615769_SNP [dm6]	G	A	4.238e^-4	0.961	INTRON CG42524
3R	19020661	3R_19020661_SNP [dm3] 3R_23194939_SNP [dm6]	T	G	4.238e^-4	0.961	INTRON cnc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	7222051	2L_7222051_SNP [dm3] 2L_7222051_SNP [dm6]	T	C	4.245e^-4	0.961	SYNONYMOUS_CODING ico DOWNSTREAM CR44989	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	4481235	2R_4481235_SNP [dm3] 2R_8593730_SNP [dm6]	C	T	4.260e^-4	0.961	DOWNSTREAM CG43183 & 1 other INTERGENIC
3L	17735624	3L_17735624_SNP [dm3] 3L_17742524_SNP [dm6]	G	A	4.270e^-4	0.961	UTR_3_PRIME CG7460 INTRON Ccn
3L	17735633	3L_17735633_SNP [dm3] 3L_17742533_SNP [dm6]	G	A	4.270e^-4	0.961	UTR_3_PRIME CG7460 INTRON Ccn
3L	10809412	3L_10809412_SNP [dm3] 3L_10816312_SNP [dm6]	A	G	4.279e^-4	0.961	UPSTREAM CR45247 DOWNSTREAM CG42831 INTERGENIC
2R	5521511	2R_5521511_SNP [dm3] 2R_9634006_SNP [dm6]	C	T	4.284e^-4	0.961	INTRON Mmp2
3R	13307215	3R_13307215_SNP [dm3] 3R_17481493_SNP [dm6]	G	C	4.291e^-4	0.961	DOWNSTREAM Dscam3 INTRON Dscam3
3R	25555426	3R_25555426_SNP [dm3] 3R_29729704_SNP [dm6]	T	C	4.293e^-4	0.961	SYNONYMOUS_CODING Kul	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	10639626	3L_10639626_SNP [dm3] 3L_10646526_SNP [dm6]	A	T	4.296e^-4	0.961	INTRON CG32066
3R	10470247	3R_10470247_SNP [dm3] 3R_14644525_SNP [dm6]	C	T	4.303e^-4	0.961	UTR_3_PRIME l_3_L1231 DOWNSTREAM l_3_L1231
2L	8398576	2L_8398576_SNP [dm3] 2L_8398576_SNP [dm6]	C	T	4.311e^-4	0.961	UPSTREAM CG13386 DOWNSTREAM CG13385 INTERGENIC
2R	13937715	2R_13937715_SNP [dm3] 2R_18050210_SNP [dm6]	G	A	4.313e^-4	0.961	UTR_3_PRIME Muc55B UPSTREAM CG14495 DOWNSTREAM Muc55B
3L	8642197	3L_8642197_SNP [dm3] 3L_8649097_SNP [dm6]	G	C	4.316e^-4	0.961	UPSTREAM Pex7 & 1 other INTRON Pex7
3R	11719739	3R_11719739_SNP [dm3] 3R_15894017_SNP [dm6]	A	G	4.316e^-4	0.961	INTRON CG14877
2L	9638736	2L_9638736_SNP [dm3] 2L_9638736_SNP [dm6]	C	A	4.319e^-4	0.961	INTRON Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	21855992	3R_21855992_SNP [dm3] 3R_26030270_SNP [dm6]	C	T	4.325e^-4	0.961	UPSTREAM E_spl_m5-HLH INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2828218	2L_2828218_SNP [dm3] 2L_2828218_SNP [dm6]	A	G	4.349e^-4	0.961	INTRON Duox
2R	6460872	2R_6460872_SNP [dm3] 2R_10573367_SNP [dm6]	T	C	4.350e^-4	0.961	INTRON psq
2L	13843166	2L_13843166_SNP [dm3] 2L_13843166_SNP [dm6]	A	C	4.364e^-4	0.961	SYNONYMOUS_CODING CG33306 DOWNSTREAM CG8997 INTRON CenG1A	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14495219	2R_14495219_SNP [dm3] 2R_18607714_SNP [dm6]	T	C	4.369e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
2L	5505424	2L_5505424_SNP [dm3] 2L_5505424_SNP [dm6]	A	G	4.371e^-4	0.961	INTERGENIC
3L	10146795	3L_10146795_SNP [dm3] 3L_10153695_SNP [dm6]	G	A	4.373e^-4	0.961	SYNONYMOUS_CODING dpr10 DOWNSTREAM CG8072 INTRON dpr10
2R	6826683	2R_6826683_SNP [dm3] 2R_10939178_SNP [dm6]	G	A	4.376e^-4	0.961	UTR_3_PRIME Spn47C	TF binding site mE1_TFBS_cad
2L	9035327	2L_9035327_SNP [dm3] 2L_9035327_SNP [dm6]	A	G	4.386e^-4	0.961	INTERGENIC
2R	5531946	2R_5531946_SNP [dm3] 2R_9644441_SNP [dm6]	A	G	4.387e^-4	0.961	INTRON Mmp2
2R	12819621	2R_12819621_SNP [dm3] 2R_16932116_SNP [dm6]	C	T	4.390e^-4	0.961	INTRON Pkc53E
2R	12820135	2R_12820135_SNP [dm3] 2R_16932630_SNP [dm6]	G	A	4.390e^-4	0.961	INTRON Pkc53E
2R	12820825	2R_12820825_SNP [dm3] 2R_16933320_SNP [dm6]	C	T	4.390e^-4	0.961	INTRON Pkc53E
2R	12825242	2R_12825242_SNP [dm3] 2R_16937737_SNP [dm6]	A	T	4.390e^-4	0.961	UPSTREAM CG43789 INTRON Pkc53E & 1 other
2R	12825662	2R_12825662_SNP [dm3] 2R_16938157_SNP [dm6]	T	C	4.390e^-4	0.961	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825678	2R_12825678_DEL [dm3] 2R_16938173_DEL [dm6]	TGT	AC	4.390e^-4	0.961	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12825726	2R_12825726_SNP [dm3] 2R_16938221_SNP [dm6]	A	T	4.390e^-4	0.961	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
2R	12827173	2R_12827173_SNP [dm3] 2R_16939668_SNP [dm6]	A	T	4.390e^-4	0.961	UPSTREAM Pkc53E DOWNSTREAM CG43789 INTRON Pkc53E
2R	12827396	2R_12827396_SNP [dm3] 2R_16939891_SNP [dm6]	G	C	4.390e^-4	0.961	DOWNSTREAM CG43789 INTRON Pkc53E
3L	1657237	3L_1657237_SNP [dm3] 3L_1657237_SNP [dm6]	G	T	4.395e^-4	0.961	SYNONYMOUS_CODING CG7971
2L	15515829	2L_15515829_SNP [dm3] 2L_15515829_SNP [dm6]	A	T	4.401e^-4	0.961	EXON CR44864
2L	14590359	2L_14590359_SNP [dm3] 2L_14590359_SNP [dm6]	T	C	4.409e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19796714	2R_19796714_SNP [dm3] 2R_23909191_SNP [dm6]	C	T	4.420e^-4	0.961	UPSTREAM CR44806 INTRON kcc	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	6473068	2L_6473068_SNP [dm3] 2L_6473068_SNP [dm6]	G	T	4.424e^-4	0.961	UPSTREAM mmy INTRON mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15380921	2L_15380921_SNP [dm3] 2L_15380921_SNP [dm6]	T	C	4.431e^-4	0.961	INTERGENIC
X	16972566	X_16972566_SNP [dm3] X_17078533_SNP [dm6]	C	A	4.433e^-4	0.961	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	21738499	3R_21738499_SNP [dm3] 3R_25912777_SNP [dm6]	C	G	4.440e^-4	0.961	UTR_3_PRIME CG42235 INTRON CG42235
3R	21738769	3R_21738769_SNP [dm3] 3R_25913047_SNP [dm6]	T	G	4.440e^-4	0.961	DOWNSTREAM CG42235 INTRON CG42235
2L	3856838	2L_3856838_SNP [dm3] 2L_3856838_SNP [dm6]	G	A	4.447e^-4	0.961	EXON CR45450	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
X	16565333	X_16565333_SNP [dm3] X_16671300_SNP [dm6]	T	C	4.447e^-4	0.961	INTRON CG13012	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11220844	3L_11220844_SNP [dm3] 3L_11227744_SNP [dm6]	T	C	4.455e^-4	0.961	UTR_3_PRIME CG42671 INTRON CG42671
3R	13266178	3R_13266178_SNP [dm3] 3R_17440456_SNP [dm6]	A	C	4.459e^-4	0.961	INTRON CG5873 & 1 other
3R	13266201	3R_13266201_SNP [dm3] 3R_17440479_SNP [dm6]	C	T	4.459e^-4	0.961	INTRON CG5873 & 1 other
3R	16308133	3R_16308133_SNP [dm3] 3R_20482411_SNP [dm6]	G	T	4.464e^-4	0.961	INTRON Gfrl
3R	18191803	3R_18191803_SNP [dm3] 3R_22366081_SNP [dm6]	A	T	4.499e^-4	0.961	UTR_3_PRIME CG5380 UPSTREAM CG5382	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	26636810	3R_26636810_SNP [dm3] 3R_30811088_SNP [dm6]	C	T	4.506e^-4	0.961	INTRON cindr
3R	17064857	3R_17064857_SNP [dm3] 3R_21239135_SNP [dm6]	G	A	4.511e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
2L	11930520	2L_11930520_SNP [dm3] 2L_11930520_SNP [dm6]	T	G	4.518e^-4	0.961	INTERGENIC
2L	7841450	2L_7841450_SNP [dm3] 2L_7841450_SNP [dm6]	A	G	4.522e^-4	0.961	DOWNSTREAM CG14537 INTERGENIC
3R	4662528	3R_4662528_SNP [dm3] 3R_8836806_SNP [dm6]	A	G	4.529e^-4	0.961	NON_SYNONYMOUS_CODING pyd INTRON pyd	TF binding site mE1_TFBS_cad
3L	4570261	3L_4570261_SNP [dm3] 3L_4570261_SNP [dm6]	A	T	4.536e^-4	0.961	INTRON CG42540
2R	5524435	2R_5524435_SNP [dm3] 2R_9636930_SNP [dm6]	G	A	4.548e^-4	0.961	DOWNSTREAM CR44070 INTRON Mmp2
X	16961128	X_16961128_INS [dm3] X_17067095_INS [dm6]	T	TTCTCCGACTTTTCGCT...	4.554e^-4	0.961	UPSTREAM CG45002 DOWNSTREAM CG43077 INTERGENIC
2L	9623412	2L_9623412_SNP [dm3] 2L_9623412_SNP [dm6]	A	G	4.556e^-4	0.961	DOWNSTREAM GlcAT-S INTERGENIC
2L	15457830	2L_15457830_SNP [dm3] 2L_15457830_SNP [dm6]	C	A	4.560e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	15561781	2R_15561781_SNP [dm3] 2R_19674276_SNP [dm6]	C	T	4.561e^-4	0.961	DOWNSTREAM isopeptidase-T-3 INTERGENIC
3R	22682468	3R_22682468_SNP [dm3] 3R_26856746_SNP [dm6]	C	A	4.564e^-4	0.961	INTRON Lerp
3R	9000985	3R_9000985_SNP [dm3] 3R_13175263_SNP [dm6]	G	A	4.565e^-4	0.961	INTERGENIC
2R	14768699	2R_14768699_SNP [dm3] 2R_18881194_SNP [dm6]	T	C	4.567e^-4	0.961	INTRON sano
2R	10674714	2R_10674714_SNP [dm3] 2R_14787209_SNP [dm6]	A	G	4.572e^-4	0.961	INTRON kn
3R	26868698	3R_26868698_DEL [dm3] 3R_31042976_DEL [dm6]	TT	T	4.577e^-4	0.961	INTRON CanA1
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	4.586e^-4	0.961	UTR_3_PRIME fas
3L	17735711	3L_17735711_SNP [dm3] 3L_17742611_SNP [dm6]	T	C	4.587e^-4	0.961	DOWNSTREAM CG7460 INTRON Ccn
3L	7031518	3L_7031518_SNP [dm3] 3L_7038418_SNP [dm6]	C	A	4.608e^-4	0.961	INTRON Mp
2L	17214212	2L_17214212_SNP [dm3] 2L_17214212_SNP [dm6]	A	T	4.624e^-4	0.961	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17214214	2L_17214214_SNP [dm3] 2L_17214214_SNP [dm6]	T	A	4.624e^-4	0.961	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5081086	3L_5081086_SNP [dm3] 3L_5081086_SNP [dm6]	A	T	4.624e^-4	0.961	INTERGENIC
3L	11406628	3L_11406628_DEL [dm3] 3L_11413528_DEL [dm6]	AA	A	4.624e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	13016788	2R_13016788_SNP [dm3] 2R_17129283_SNP [dm6]	A	G	4.629e^-4	0.961	SYNONYMOUS_CODING Cda9
3L	14607150	3L_14607150_SNP [dm3] 3L_14614050_SNP [dm6]	A	G	4.632e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15896375	3R_15896375_SNP [dm3] 3R_20070653_SNP [dm6]	G	A	4.632e^-4	0.961	INTERGENIC
2R	15392107	2R_15392107_SNP [dm3] 2R_19504602_SNP [dm6]	C	T	4.647e^-4	0.961	UPSTREAM CR44472 DOWNSTREAM CG11007 INTERGENIC
3R	10318373	3R_10318373_SNP [dm3] 3R_14492651_SNP [dm6]	G	T	4.651e^-4	0.961	INTERGENIC
2R	17388154	2R_17388154_SNP [dm3] 2R_21500649_SNP [dm6]	G	A	4.652e^-4	0.961	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2R	17388193	2R_17388193_SNP [dm3] 2R_21500688_SNP [dm6]	T	C	4.652e^-4	0.961	SYNONYMOUS_CODING TAF1C-like	TF binding site mE1_TFBS_sens
2R	17388242	2R_17388242_SNP [dm3] 2R_21500737_SNP [dm6]	T	A	4.652e^-4	0.961	NON_SYNONYMOUS_CODING TAF1C-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17388253	2R_17388253_SNP [dm3] 2R_21500748_SNP [dm6]	C	G	4.652e^-4	0.961	SYNONYMOUS_CODING TAF1C-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	17390062	2R_17390062_SNP [dm3] 2R_21502557_SNP [dm6]	A	G	4.652e^-4	0.961	UPSTREAM TAF1C-like INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17391344	2R_17391344_SNP [dm3] 2R_21503839_SNP [dm6]	T	G	4.652e^-4	0.961	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	17391701	2R_17391701_DEL [dm3] 2R_21504196_DEL [dm6]	ATA	A	4.652e^-4	0.961	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	7549879	2R_7549879_SNP [dm3] 2R_11662374_SNP [dm6]	A	T	4.655e^-4	0.961	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15896348	3R_15896348_DEL [dm3] 3R_20070626_DEL [dm6]	GT	G	4.662e^-4	0.961	INTERGENIC
3L	6327199	3L_6327199_SNP [dm3] 3L_6334099_SNP [dm6]	T	A	4.686e^-4	0.961	INTRON CG13300	TF binding site BDTNP1_TFBS_twi
2R	10673694	2R_10673694_SNP [dm3] 2R_14786189_SNP [dm6]	T	A	4.702e^-4	0.961	INTRON kn
X	9048027	X_9048027_SNP [dm3] X_9153994_SNP [dm6]	G	A	4.711e^-4	0.961	UTR_3_PRIME His3.3B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25522176	3R_25522176_SNP [dm3] 3R_29696454_SNP [dm6]	C	T	4.713e^-4	0.961	UTR_3_PRIME dmrt99B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	21590791	3R_21590791_SNP [dm3] 3R_25765069_SNP [dm6]	C	A	4.750e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17217530	3R_17217530_SNP [dm3] 3R_21391808_SNP [dm6]	T	A	4.751e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_eve
2L	17795881	2L_17795881_SNP [dm3] 2L_17795881_SNP [dm6]	A	C	4.754e^-4	0.961	INTRON CadN2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17813348	2L_17813348_SNP [dm3] 2L_17813348_SNP [dm6]	C	T	4.754e^-4	0.961	UPSTREAM CG42830 INTRON CadN2
3R	9867618	3R_9867618_SNP [dm3] 3R_14041896_SNP [dm6]	A	G	4.770e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	9867621	3R_9867621_INS [dm3] 3R_14041899_INS [dm6]	T	TTA	4.770e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	14429204	2R_14429204_SNP [dm3] 2R_18541699_SNP [dm6]	A	G	4.776e^-4	0.961	INTRON Rgk2
2L	10497731	2L_10497731_SNP [dm3] 2L_10497731_SNP [dm6]	G	A	4.778e^-4	0.961	INTRON Myo31DF
2R	12825682	2R_12825682_SNP [dm3] 2R_16938177_SNP [dm6]	G	C	4.806e^-4	0.961	UPSTREAM CG43789 DOWNSTREAM CG43788 INTRON Pkc53E
3L	14077596	3L_14077596_SNP [dm3] 3L_14084496_SNP [dm6]	C	A	4.807e^-4	0.961	NON_SYNONYMOUS_CODING CG8100
X	10395513	X_10395513_SNP [dm3] X_10501480_SNP [dm6]	A	C	4.815e^-4	0.961	INTRON spri
2R	1982686	2R_1982686_SNP [dm3] 2R_6095181_SNP [dm6]	T	C	4.816e^-4	0.961	INTRON EcR
3R	16314898	3R_16314898_SNP [dm3] 3R_20489176_SNP [dm6]	A	T	4.822e^-4	0.961	INTERGENIC
3L	17270828	3L_17270828_SNP [dm3] 3L_17277728_SNP [dm6]	C	T	4.823e^-4	0.961	INTERGENIC
2R	13538078	2R_13538078_SNP [dm3] 2R_17650573_SNP [dm6]	T	C	4.830e^-4	0.961	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13508321	X_13508321_SNP [dm3] X_13614288_SNP [dm6]	C	T	4.840e^-4	0.961	UTR_3_PRIME tth	TF binding site mE1_TFBS_chinmo
3R	23764804	3R_23764804_SNP [dm3] 3R_27939082_SNP [dm6]	C	T	4.843e^-4	0.961	SYNONYMOUS_CODING CG5514	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6927477	3L_6927477_SNP [dm3] 3L_6934377_SNP [dm6]	A	C	4.848e^-4	0.961	INTRON CG14820
2R	6460881	2R_6460881_SNP [dm3] 2R_10573376_SNP [dm6]	A	T	4.848e^-4	0.961	INTRON psq
2R	14495268	2R_14495268_SNP [dm3] 2R_18607763_SNP [dm6]	A	T	4.854e^-4	0.961	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	15048792	3L_15048792_SNP [dm3] 3L_15055692_SNP [dm6]	T	A	4.859e^-4	0.961	DOWNSTREAM CG13463 INTRON Sytbeta
3R	25550887	3R_25550887_SNP [dm3] 3R_29725165_SNP [dm6]	A	T	4.871e^-4	0.961	UTR_5_PRIME CG18731 UPSTREAM Kul & 1 other DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk
2R	16029787	2R_16029787_INS [dm3] 2R_20142282_INS [dm6]	G	GCG	4.883e^-4	0.961	INTERGENIC
3L	8642172	3L_8642172_SNP [dm3] 3L_8649072_SNP [dm6]	G	A	4.896e^-4	0.961	UPSTREAM Pex7 & 1 other INTRON Pex7
X	13699232	X_13699232_SNP [dm3] X_13805199_SNP [dm6]	A	C	4.897e^-4	0.961	INTRON inaE	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9055427	2L_9055427_SNP [dm3] 2L_9055427_SNP [dm6]	A	G	4.901e^-4	0.961	INTRON CG31708
3L	5443262	3L_5443262_SNP [dm3] 3L_5450162_SNP [dm6]	G	T	4.902e^-4	0.961	INTERGENIC
3R	26889305	3R_26889305_SNP [dm3] 3R_31063583_SNP [dm6]	T	C	4.904e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
3R	10037372	3R_10037372_SNP [dm3] 3R_14211650_SNP [dm6]	C	T	4.904e^-4	0.961	INTRON Dop1R1
2R	11502994	2R_11502994_SNP [dm3] 2R_15615489_SNP [dm6]	C	T	4.909e^-4	0.961	INTRON CG42524
3R	25416316	3R_25416316_SNP [dm3] 3R_29590594_SNP [dm6]	C	T	4.915e^-4	0.961	NON_SYNONYMOUS_CODING CG31041 UPSTREAM CG11470	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11744234	2L_11744234_SNP [dm3] 2L_11744234_SNP [dm6]	A	G	4.921e^-4	0.961	UTR_3_PRIME Vha100-5 EXON CR44144
2R	3728875	2R_3728875_INS [dm3] 2R_7841370_INS [dm6]	C	CATCAATGATGCAAATGC...	4.924e^-4	0.961	INTRON Dgk
3L	15715020	3L_15715020_SNP [dm3] 3L_15721920_SNP [dm6]	T	A	4.935e^-4	0.961	UTR_3_PRIME comm DOWNSTREAM comm
3L	15715027	3L_15715027_SNP [dm3] 3L_15721927_SNP [dm6]	T	C	4.935e^-4	0.961	UTR_3_PRIME comm DOWNSTREAM comm
3L	11175327	3L_11175327_SNP [dm3] 3L_11182227_SNP [dm6]	T	C	4.937e^-4	0.961	SYNONYMOUS_CODING GlcAT-P INTRON GlcAT-P
3L	10639620	3L_10639620_SNP [dm3] 3L_10646520_SNP [dm6]	C	T	4.939e^-4	0.961	INTRON CG32066
3R	13765767	3R_13765767_SNP [dm3] 3R_17940045_SNP [dm6]	G	A	4.940e^-4	0.961	INTRON cpo
2R	8437137	2R_8437137_SNP [dm3] 2R_12549632_SNP [dm6]	T	C	4.944e^-4	0.961	INTRON fra
3L	12846452	3L_12846452_SNP [dm3] 3L_12853352_SNP [dm6]	A	G	4.945e^-4	0.961	UPSTREAM Ent3 DOWNSTREAM Wbp2 INTERGENIC
3R	27364177	3R_27364177_SNP [dm3] 3R_31538455_SNP [dm6]	T	C	4.949e^-4	0.961	INTERGENIC
X	16972385	X_16972385_SNP [dm3] X_17078352_SNP [dm6]	G	A	4.963e^-4	0.961	UPSTREAM CG4949 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4094340	3L_4094340_SNP [dm3] 3L_4094340_SNP [dm6]	T	A	4.963e^-4	0.961	UTR_3_PRIME CG14990 DOWNSTREAM CG14995	TF binding site mE1_TFBS_cad
3L	1094052	3L_1094052_SNP [dm3] 3L_1094052_SNP [dm6]	G	T	4.973e^-4	0.961	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	21164296	3L_21164296_SNP [dm3] 3L_21171196_SNP [dm6]	A	G	4.986e^-4	0.961	INTRON Ac78C
3L	4461708	3L_4461708_SNP [dm3] 3L_4461708_SNP [dm6]	T	A	4.987e^-4	0.961	UPSTREAM CG15023 INTERGENIC
3L	8438294	3L_8438294_SNP [dm3] 3L_8445194_SNP [dm6]	T	G	4.988e^-4	0.961	INTRON CG6983	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	18728861	X_18728861_SNP [dm3] X_18834828_SNP [dm6]	G	C	4.993e^-4	0.961	INTRON Pvf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3R	13043505	3R_13043505_SNP [dm3] 3R_17217783_SNP [dm6]	C	T	5.000e^-4	0.961	SYNONYMOUS_CODING CG31262 UTR_3_PRIME CG31262
3L	11434350	3L_11434350_DEL [dm3] 3L_11441250_DEL [dm6]	TT	T	5.002e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23880893	3R_23880893_SNP [dm3] 3R_28055171_SNP [dm6]	A	G	5.009e^-4	0.961	INTRON CG34362
3L	18866865	3L_18866865_SNP [dm3] 3L_18873765_SNP [dm6]	C	A	5.010e^-4	0.961	SYNONYMOUS_CODING Ugt	TF binding site mE1_TFBS_sens
2R	14759254	2R_14759254_SNP [dm3] 2R_18871749_SNP [dm6]	C	G	5.015e^-4	0.961	INTERGENIC
2R	10954249	2R_10954249_SNP [dm3] 2R_15066744_SNP [dm6]	G	C	5.024e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
2L	4346243	2L_4346243_SNP [dm3] 2L_4346243_SNP [dm6]	A	T	5.038e^-4	0.961	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21680281	3R_21680281_SNP [dm3] 3R_25854559_SNP [dm6]	G	T	5.039e^-4	0.961	DOWNSTREAM CG5886 INTERGENIC
2R	20173288	2R_20173288_SNP [dm3] 2R_24285765_SNP [dm6]	C	T	5.039e^-4	0.961	INTRON nvy	TF binding site mE1_TFBS_chinmo
2R	13178679	2R_13178679_SNP [dm3] 2R_17291174_SNP [dm6]	T	A	5.049e^-4	0.961	INTRON mbl
2R	13178714	2R_13178714_SNP [dm3] 2R_17291209_SNP [dm6]	A	G	5.049e^-4	0.961	INTRON mbl
3L	18808313	3L_18808313_SNP [dm3] 3L_18815213_SNP [dm6]	A	T	5.065e^-4	0.961	INTRON CG14073	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
3R	22723145	3R_22723145_SNP [dm3] 3R_26897423_SNP [dm6]	T	A	5.069e^-4	0.961	INTRON T48	regulatory region REDfly_CRMs
2L	5534999	2L_5534999_SNP [dm3] 2L_5534999_SNP [dm6]	G	T	5.082e^-4	0.961	DOWNSTREAM tomb INTRON Cap-D3	TF binding site mE1_TFBS_HSA
3L	17712060	3L_17712060_SNP [dm3] 3L_17718960_SNP [dm6]	C	A	5.095e^-4	0.961	DOWNSTREAM CheB74a INTRON Ccn
2R	9707435	2R_9707435_SNP [dm3] 2R_13819930_SNP [dm6]	T	C	5.101e^-4	0.961	UTR_3_PRIME fl_2_d DOWNSTREAM stj
2L	5526263	2L_5526263_SNP [dm3] 2L_5526263_SNP [dm6]	T	C	5.110e^-4	0.961	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	5526287	2L_5526287_SNP [dm3] 2L_5526287_SNP [dm6]	G	C	5.110e^-4	0.961	SYNONYMOUS_CODING Cap-D3 UPSTREAM CG31648 DOWNSTREAM CG6907 EXON CR44793	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	5830441	X_5830441_SNP [dm3] X_5936408_SNP [dm6]	C	T	5.112e^-4	0.961	INTRON CG3726
3L	989119	3L_989119_SNP [dm3] 3L_989119_SNP [dm6]	T	C	5.114e^-4	0.961	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	23980932	3R_23980932_SNP [dm3] 3R_28155210_SNP [dm6]	C	T	5.117e^-4	0.961	INTRON CG34354	TF binding site BDTNP1_TFBS_twi
3L	993063	3L_993063_SNP [dm3] 3L_993063_SNP [dm6]	G	C	5.124e^-4	0.961	UTR_3_PRIME Glut1 UPSTREAM CG12038
2L	14066824	2L_14066824_SNP [dm3] 2L_14066824_SNP [dm6]	T	A	5.124e^-4	0.961	INTRON nAChRalpha5
3R	25849622	3R_25849622_SNP [dm3] 3R_30023900_SNP [dm6]	C	T	5.135e^-4	0.961	INTRON Axn
3L	5862639	3L_5862639_SNP [dm3] 3L_5869539_SNP [dm6]	A	G	5.140e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14548063	2L_14548063_SNP [dm3] 2L_14548063_SNP [dm6]	T	C	5.147e^-4	0.961	SYNONYMOUS_CODING CG4218 DOWNSTREAM CG4218
3L	18852267	3L_18852267_SNP [dm3] 3L_18859167_SNP [dm6]	A	G	5.153e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15650226	3R_15650226_SNP [dm3] 3R_19824504_SNP [dm6]	T	A	5.156e^-4	0.961	INTRON bnl
3R	15339564	3R_15339564_SNP [dm3] 3R_19513842_SNP [dm6]	A	T	5.160e^-4	0.961	INTRON Dys
3L	18345414	3L_18345414_SNP [dm3] 3L_18352314_SNP [dm6]	A	G	5.177e^-4	0.961	INTERGENIC
3R	19845152	3R_19845152_SNP [dm3] 3R_24019430_SNP [dm6]	T	G	5.182e^-4	0.961	INTRON KrT95D
2R	8499487	2R_8499487_DEL [dm3] 2R_12611982_DEL [dm6]	TT	T	5.186e^-4	0.961	UTR_3_PRIME Amph UPSTREAM Galphaq & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2R	17391679	2R_17391679_SNP [dm3] 2R_21504174_SNP [dm6]	T	G	5.199e^-4	0.961	INTRON MESK2	TF binding site mE1_TFBS_inv
2R	17392016	2R_17392016_SNP [dm3] 2R_21504511_SNP [dm6]	T	C	5.200e^-4	0.961	INTRON MESK2	TF binding site mE1_TFBS_inv
3R	5263958	3R_5263958_SNP [dm3] 3R_9438236_SNP [dm6]	A	G	5.203e^-4	0.961	INTRON ps
3L	5081069	3L_5081069_SNP [dm3] 3L_5081069_SNP [dm6]	T	A	5.210e^-4	0.961	INTERGENIC
3L	5081084	3L_5081084_SNP [dm3] 3L_5081084_SNP [dm6]	A	T	5.210e^-4	0.961	INTERGENIC
3L	11647471	3L_11647471_SNP [dm3] 3L_11654371_SNP [dm6]	G	C	5.220e^-4	0.961	INTRON CG32085
2R	15987709	2R_15987709_SNP [dm3] 2R_20100204_SNP [dm6]	T	A	5.227e^-4	0.961	INTERGENIC
3R	23265194	3R_23265194_SNP [dm3] 3R_27439472_SNP [dm6]	A	G	5.228e^-4	0.961	UPSTREAM CG43447 INTRON CG44290
3R	18266959	3R_18266959_SNP [dm3] 3R_22441237_SNP [dm6]	G	T	5.238e^-4	0.961	SYNONYMOUS_CODING CG12499	TF binding site mE1_TFBS_cad
3R	27476482	3R_27476482_SNP [dm3] 3R_31650760_SNP [dm6]	G	A	5.245e^-4	0.961	INTRON kek6
X	2611324	X_2611324_SNP [dm3] X_2717291_SNP [dm6]	T	A	5.265e^-4	0.961	UTR_3_PRIME CG2694 DOWNSTREAM CG2701
2R	8792304	2R_8792304_SNP [dm3] 2R_12904799_SNP [dm6]	C	A	5.289e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8792305	2R_8792305_SNP [dm3] 2R_12904800_SNP [dm6]	C	T	5.289e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	21750319	3R_21750319_SNP [dm3] 3R_25924597_SNP [dm6]	G	A	5.292e^-4	0.961	INTRON CCAP-R
3R	21750332	3R_21750332_SNP [dm3] 3R_25924610_SNP [dm6]	A	T	5.292e^-4	0.961	INTRON CCAP-R
3R	21750348	3R_21750348_SNP [dm3] 3R_25924626_SNP [dm6]	T	A	5.292e^-4	0.961	INTRON CCAP-R
3R	21704764	3R_21704764_SNP [dm3] 3R_25879042_SNP [dm6]	C	T	5.293e^-4	0.961	INTRON Tsp96F
3L	14607089	3L_14607089_SNP [dm3] 3L_14613989_SNP [dm6]	C	T	5.296e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14607090	3L_14607090_SNP [dm3] 3L_14613990_SNP [dm6]	A	T	5.296e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14607107	3L_14607107_SNP [dm3] 3L_14614007_SNP [dm6]	A	T	5.296e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14607108	3L_14607108_SNP [dm3] 3L_14614008_SNP [dm6]	A	C	5.296e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	23532357	3R_23532357_SNP [dm3] 3R_27706635_SNP [dm6]	C	A	5.303e^-4	0.961	UTR_5_PRIME CG12428 UPSTREAM CG12877 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8500175	2R_8500175_SNP [dm3] 2R_12612670_SNP [dm6]	G	T	5.314e^-4	0.961	UPSTREAM Galphaq & 1 other DOWNSTREAM Amph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_ttk
3R	24866763	3R_24866763_SNP [dm3] 3R_29041041_SNP [dm6]	A	G	5.317e^-4	0.961	INTRON Pkc98E	TF binding site BDTNP1_TFBS_dl
3L	8458032	3L_8458032_SNP [dm3] 3L_8464932_SNP [dm6]	T	A	5.322e^-4	0.961	SYNONYMOUS_CODING Gug	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5120703	3L_5120703_SNP [dm3] 3L_5127603_SNP [dm6]	T	A	5.324e^-4	0.961	INTERGENIC
2R	12818663	2R_12818663_SNP [dm3] 2R_16931158_SNP [dm6]	C	T	5.328e^-4	0.961	INTRON Pkc53E
3L	18856458	3L_18856458_SNP [dm3] 3L_18863358_SNP [dm6]	G	C	5.329e^-4	0.961	UPSTREAM CG6865 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3L	14607099	3L_14607099_SNP [dm3] 3L_14613999_SNP [dm6]	G	T	5.344e^-4	0.961	UPSTREAM shd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5536166	2R_5536166_SNP [dm3] 2R_9648661_SNP [dm6]	C	A	5.346e^-4	0.961	INTRON Mmp2
3R	9867876	3R_9867876_SNP [dm3] 3R_14042154_SNP [dm6]	C	T	5.347e^-4	0.961	INTERGENIC
3L	10813133	3L_10813133_SNP [dm3] 3L_10820033_SNP [dm6]	C	T	5.352e^-4	0.961	INTERGENIC
3R	14999902	3R_14999902_SNP [dm3] 3R_19174180_SNP [dm6]	T	A	5.353e^-4	0.961	INTERGENIC
X	4632863	X_4632863_SNP [dm3] X_4738830_SNP [dm6]	T	C	5.359e^-4	0.961	INTERGENIC
3R	24174299	3R_24174299_SNP [dm3] 3R_28348577_SNP [dm6]	A	G	5.363e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	4746916	3L_4746916_SNP [dm3] 3L_4746916_SNP [dm6]	T	G	5.379e^-4	0.961	UPSTREAM CR43882 INTRON RhoGEF64C
X	2353250	X_2353250_SNP [dm3] X_2459217_SNP [dm6]	A	C	5.387e^-4	0.961	INTRON boi
3L	4570304	3L_4570304_SNP [dm3] 3L_4570304_SNP [dm6]	T	G	5.394e^-4	0.961	INTRON CG42540
3R	15898077	3R_15898077_SNP [dm3] 3R_20072355_SNP [dm6]	A	G	5.395e^-4	0.961	INTERGENIC
2R	19031415	2R_19031415_SNP [dm3] 2R_23143892_SNP [dm6]	A	T	5.416e^-4	0.961	NON_SYNONYMOUS_CODING Klp59D	TF binding site mE1_TFBS_cad
3R	21740183	3R_21740183_SNP [dm3] 3R_25914461_SNP [dm6]	G	T	5.419e^-4	0.961	SYNONYMOUS_CODING CG42235 INTRON CG42235	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19182089	X_19182089_SNP [dm3] X_19288056_SNP [dm6]	A	G	5.419e^-4	0.961	INTRON CG8034	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2017785	3L_2017785_SNP [dm3] 3L_2017785_SNP [dm6]	A	G	5.424e^-4	0.961	INTERGENIC
2L	17804935	2L_17804935_SNP [dm3] 2L_17804935_SNP [dm6]	T	C	5.426e^-4	0.961	INTRON CadN2
3R	15896567	3R_15896567_SNP [dm3] 3R_20070845_SNP [dm6]	C	T	5.439e^-4	0.961	INTERGENIC
X	5885509	X_5885509_SNP [dm3] X_5991476_SNP [dm6]	C	T	5.442e^-4	0.961	INTRON CG5966	TF binding site mE1_TFBS_bab1 mE1_TFBS_chinmo
3R	21852377	3R_21852377_SNP [dm3] 3R_26026655_SNP [dm6]	A	T	5.455e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	3728871	2R_3728871_INS [dm3] 2R_7841366_INS [dm6]	T	TTG	5.458e^-4	0.961	INTRON Dgk
2L	17811706	2L_17811706_SNP [dm3] 2L_17811706_SNP [dm6]	C	A	5.482e^-4	0.961	DOWNSTREAM CG42830 INTRON CadN2
3R	4669742	3R_4669742_SNP [dm3] 3R_8844020_SNP [dm6]	T	A	5.482e^-4	0.961	INTRON pyd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2L	20123583	2L_20123583_SNP [dm3] 2L_20123583_SNP [dm6]	T	C	5.484e^-4	0.961	INTERGENIC
2R	17605582	2R_17605582_SNP [dm3] 2R_21718077_SNP [dm6]	G	A	5.491e^-4	0.961	SYNONYMOUS_CODING CG30398 UPSTREAM Tango11 INTRON Tango11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8726049	3R_8726049_SNP [dm3] 3R_12900327_SNP [dm6]	G	A	5.494e^-4	0.961	INTERGENIC
3R	8726060	3R_8726060_SNP [dm3] 3R_12900338_SNP [dm6]	A	T	5.494e^-4	0.961	INTERGENIC
3R	8726063	3R_8726063_SNP [dm3] 3R_12900341_SNP [dm6]	G	A	5.494e^-4	0.961	INTERGENIC
3R	8726077	3R_8726077_SNP [dm3] 3R_12900355_SNP [dm6]	C	A	5.494e^-4	0.961	INTERGENIC
X	14137381	X_14137381_SNP [dm3] X_14243348_SNP [dm6]	C	T	5.495e^-4	0.961	UPSTREAM CG32599 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26415273	3R_26415273_SNP [dm3] 3R_30589551_SNP [dm6]	T	A	5.496e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4392600	2R_4392600_DEL [dm3] 2R_8505095_DEL [dm6]	TAT	T	5.500e^-4	0.961	INTRON mtt
3R	15896427	3R_15896427_DEL [dm3] 3R_20070705_DEL [dm6]	GCTTT	C	5.501e^-4	0.961	INTERGENIC
3R	21387341	3R_21387341_SNP [dm3] 3R_25561619_SNP [dm6]	G	T	5.506e^-4	0.961	INTRON msi
3R	26415332	3R_26415332_SNP [dm3] 3R_30589610_SNP [dm6]	A	C	5.508e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16173794	2R_16173794_SNP [dm3] 2R_20286289_SNP [dm6]	A	G	5.531e^-4	0.961	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2R	16173800	2R_16173800_SNP [dm3] 2R_20286295_SNP [dm6]	T	C	5.531e^-4	0.961	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
3L	9496072	3L_9496072_SNP [dm3] 3L_9502972_SNP [dm6]	G	T	5.535e^-4	0.961	INTRON path	TF binding site BDTNP1_TFBS_twi
2L	15042008	2L_15042008_SNP [dm3] 2L_15042008_SNP [dm6]	A	G	5.536e^-4	0.961	INTRON Su_H_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16583202	X_16583202_SNP [dm3] X_16689169_SNP [dm6]	T	C	5.536e^-4	0.961	INTRON Sep4
3L	17756319	3L_17756319_SNP [dm3] 3L_17763219_SNP [dm6]	T	A	5.545e^-4	0.961	DOWNSTREAM CG32181 INTRON Adgf-A & 1 other
2R	12580455	2R_12580455_SNP [dm3] 2R_16692950_SNP [dm6]	G	A	5.546e^-4	0.961	INTRON CG30463 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14419124	2R_14419124_SNP [dm3] 2R_18531619_SNP [dm6]	A	G	5.549e^-4	0.961	UPSTREAM CG10924 INTRON CG10924	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14005197	2L_14005197_SNP [dm3] 2L_14005197_SNP [dm6]	T	G	5.553e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3L	15575028	3L_15575028_SNP [dm3] 3L_15581928_SNP [dm6]	T	A	5.560e^-4	0.961	NON_SYNONYMOUS_CODING CG12301	TF binding site mE1_TFBS_sens
2L	4890572	2L_4890572_SNP [dm3] 2L_4890572_SNP [dm6]	G	C	5.562e^-4	0.961	SYNONYMOUS_CODING CG15625 DOWNSTREAM CR45716	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14356655	2R_14356655_SNP [dm3] 2R_18469150_SNP [dm6]	T	C	5.569e^-4	0.961	INTRON CG30116
2R	4244350	2R_4244350_SNP [dm3] 2R_8356845_SNP [dm6]	G	A	5.570e^-4	0.961	INTRON pdm3
2R	4244633	2R_4244633_SNP [dm3] 2R_8357128_SNP [dm6]	C	A	5.570e^-4	0.961	INTRON pdm3
2R	4245598	2R_4245598_SNP [dm3] 2R_8358093_SNP [dm6]	T	C	5.570e^-4	0.961	UPSTREAM CG11635 INTRON pdm3	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	13116382	2R_13116382_SNP [dm3] 2R_17228877_SNP [dm6]	G	A	5.571e^-4	0.961	INTRON mbl
3L	8642328	3L_8642328_SNP [dm3] 3L_8649228_SNP [dm6]	C	T	5.572e^-4	0.961	UPSTREAM Pex7 & 1 other INTRON Pex7
3R	17040695	3R_17040695_SNP [dm3] 3R_21214973_SNP [dm6]	G	C	5.574e^-4	0.961	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	2424308	2R_2424308_SNP [dm3] 2R_6536803_SNP [dm6]	A	C	5.580e^-4	0.961	INTRON jing
2R	20516364	2R_20516364_SNP [dm3] 2R_24628841_SNP [dm6]	A	C	5.584e^-4	0.961	UPSTREAM snoRNA:Me18S-G393 INTRON CG13594
2R	7228322	2R_7228322_SNP [dm3] 2R_11340817_SNP [dm6]	G	A	5.587e^-4	0.961	SYNONYMOUS_CODING etaTry UPSTREAM zetaTry DOWNSTREAM thetaTry	TF binding site mE1_TFBS_cad
3L	993046	3L_993046_SNP [dm3] 3L_993046_SNP [dm6]	G	T	5.600e^-4	0.961	UTR_3_PRIME Glut1 UPSTREAM CG12038
3R	9867609	3R_9867609_SNP [dm3] 3R_14041887_SNP [dm6]	A	T	5.602e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	7596128	2R_7596128_SNP [dm3] 2R_11708623_SNP [dm6]	G	C	5.618e^-4	0.961	INTERGENIC
3R	6828315	3R_6828315_SNP [dm3] 3R_11002593_SNP [dm6]	G	C	5.618e^-4	0.961	INTRON CG34114
3L	15714973	3L_15714973_SNP [dm3] 3L_15721873_SNP [dm6]	A	T	5.623e^-4	0.961	UTR_3_PRIME comm DOWNSTREAM comm
2R	7313128	2R_7313128_SNP [dm3] 2R_11425623_SNP [dm6]	G	T	5.633e^-4	0.961	UPSTREAM Drip INTRON Drip	TF binding site mE1_TFBS_inv
3R	25021167	3R_25021167_SNP [dm3] 3R_29195445_SNP [dm6]	T	A	5.641e^-4	0.961	UPSTREAM CG14509 INTERGENIC
3R	10037433	3R_10037433_SNP [dm3] 3R_14211711_SNP [dm6]	A	T	5.646e^-4	0.961	INTRON Dop1R1
2L	18989983	2L_18989983_SNP [dm3] 2L_18989983_SNP [dm6]	C	A	5.661e^-4	0.961	NON_SYNONYMOUS_CODING CG15170	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	18731200	2L_18731200_SNP [dm3] 2L_18731200_SNP [dm6]	G	T	5.664e^-4	0.961	UTR_5_PRIME CG10348
2L	18800456	2L_18800456_SNP [dm3] 2L_18800456_SNP [dm6]	C	T	5.664e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18803322	2L_18803322_SNP [dm3] 2L_18803322_SNP [dm6]	T	G	5.664e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15987704	2R_15987704_SNP [dm3] 2R_20100199_SNP [dm6]	T	A	5.669e^-4	0.961	INTERGENIC
2L	17792587	2L_17792587_SNP [dm3] 2L_17792587_SNP [dm6]	C	A	5.673e^-4	0.961	INTRON CadN2 EXON CR43419	TF binding site mE1_TFBS_cad
3L	4138701	3L_4138701_SNP [dm3] 3L_4138701_SNP [dm6]	T	C	5.682e^-4	0.961	SYNONYMOUS_CODING Rop UPSTREAM Ras64B	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11691599	2L_11691599_SNP [dm3] 2L_11691599_SNP [dm6]	G	C	5.689e^-4	0.961	INTERGENIC
3R	19145470	3R_19145470_SNP [dm3] 3R_23319748_SNP [dm6]	G	A	5.697e^-4	0.961	INTRON pnt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
2L	17813322	2L_17813322_DEL [dm3] 2L_17813322_DEL [dm6]	ACCAGCCA	A	5.700e^-4	0.961	UPSTREAM CG42830 INTRON CadN2
3L	17319602	3L_17319602_INS [dm3] 3L_17326502_INS [dm6]	G	GG	5.702e^-4	0.961	UPSTREAM CG13725 INTERGENIC
X	18467443	X_18467443_SNP [dm3] X_18573410_SNP [dm6]	A	T	5.707e^-4	0.961	DOWNSTREAM Bx INTERGENIC
2L	18565322	2L_18565322_SNP [dm3] 2L_18565322_SNP [dm6]	A	T	5.715e^-4	0.961	INTRON Pde11	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18565349	2L_18565349_SNP [dm3] 2L_18565349_SNP [dm6]	A	G	5.715e^-4	0.961	INTRON Pde11	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	7841437	2L_7841437_SNP [dm3] 2L_7841437_SNP [dm6]	C	A	5.716e^-4	0.961	DOWNSTREAM CG14537 INTERGENIC
2L	17185416	2L_17185416_SNP [dm3] 2L_17185416_SNP [dm6]	C	G	5.721e^-4	0.961	INTERGENIC
2L	20124868	2L_20124868_SNP [dm3] 2L_20124868_SNP [dm6]	T	C	5.725e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7562544	2R_7562544_DEL [dm3] 2R_11675039_DEL [dm6]	GCAAAA	G	5.725e^-4	0.961	UPSTREAM Tret1-2 DOWNSTREAM Tret1-1 INTRON Roc2
3R	15657099	3R_15657099_DEL [dm3] 3R_19831377_DEL [dm6]	TT	T	5.731e^-4	0.961	INTRON bnl
3L	1392230	3L_1392230_SNP [dm3] 3L_1392230_SNP [dm6]	A	T	5.732e^-4	0.961	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8320488	3L_8320488_SNP [dm3] 3L_8327388_SNP [dm6]	A	T	5.735e^-4	0.961	UTR_3_PRIME CG34461 DOWNSTREAM CG34461	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	13847064	2L_13847064_SNP [dm3] 2L_13847064_SNP [dm6]	C	T	5.740e^-4	0.961	SYNONYMOUS_CODING CG7916 UPSTREAM CG7953 INTRON CenG1A	TF binding site mE1_TFBS_cad
2R	15236116	2R_15236116_SNP [dm3] 2R_19348611_SNP [dm6]	C	T	5.756e^-4	0.961	INTRON Rgk1
2L	17255429	2L_17255429_SNP [dm3] 2L_17255429_SNP [dm6]	A	T	5.761e^-4	0.961	INTRON beat-IIIc
3R	22433172	3R_22433172_SNP [dm3] 3R_26607450_SNP [dm6]	C	T	5.762e^-4	0.961	EXON CR44951	TF binding site mE1_TFBS_HSA
2L	19973117	2L_19973117_SNP [dm3] 2L_19973117_SNP [dm6]	C	T	5.775e^-4	0.961	INTRON CG43861
3L	12553610	3L_12553610_SNP [dm3] 3L_12560510_SNP [dm6]	A	C	5.776e^-4	0.961	INTRON sowah
2R	5625598	2R_5625598_SNP [dm3] 2R_9738093_SNP [dm6]	C	T	5.779e^-4	0.961	INTRON sqa
X	16986522	X_16986522_SNP [dm3] X_17092489_SNP [dm6]	T	C	5.779e^-4	0.961	INTRON CG16700 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	6183867	2L_6183867_SNP [dm3] 2L_6183867_SNP [dm6]	A	G	5.781e^-4	0.961	INTRON CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
2R	14360666	2R_14360666_SNP [dm3] 2R_18473161_SNP [dm6]	T	G	5.791e^-4	0.961	INTRON CG30116
3R	17173952	3R_17173952_SNP [dm3] 3R_21348230_SNP [dm6]	G	A	5.802e^-4	0.961	INTRON CG16791	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	18573790	2L_18573790_SNP [dm3] 2L_18573790_SNP [dm6]	T	C	5.806e^-4	0.961	INTRON Pde11
2L	3290921	2L_3290921_SNP [dm3] 2L_3290921_SNP [dm6]	C	A	5.806e^-4	0.961	DOWNSTREAM CG9664 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	14999904	3R_14999904_SNP [dm3] 3R_19174182_SNP [dm6]	A	T	5.810e^-4	0.961	INTERGENIC
2R	4009725	2R_4009725_SNP [dm3] 2R_8122220_SNP [dm6]	G	A	5.826e^-4	0.961	UPSTREAM Nup50 INTRON Asap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17395496	2R_17395496_SNP [dm3] 2R_21507991_SNP [dm6]	A	T	5.828e^-4	0.961	INTRON MESK2
2L	18595979	2L_18595979_SNP [dm3] 2L_18595979_SNP [dm6]	T	C	5.829e^-4	0.961	DOWNSTREAM amos & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
X	15815678	X_15815678_INS [dm3] X_15921645_INS [dm6]	A	ACA	5.833e^-4	0.961	UPSTREAM CG8916 DOWNSTREAM CG8909 INTERGENIC
3L	4669850	3L_4669850_DEL [dm3] 3L_4669850_DEL [dm6]	GTG	G	5.834e^-4	0.961	INTRON axo	TF binding site BDTNP1_TFBS_twi
3L	15696880	3L_15696880_SNP [dm3] 3L_15703780_SNP [dm6]	A	T	5.839e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3L	15377449	3L_15377449_SNP [dm3] 3L_15384349_SNP [dm6]	A	G	5.845e^-4	0.961	INTERGENIC
2L	10346912	2L_10346912_SNP [dm3] 2L_10346912_SNP [dm6]	T	C	5.846e^-4	0.961	DOWNSTREAM CG34367 INTRON CG5022
2R	18795945	2R_18795945_SNP [dm3] 2R_22908422_SNP [dm6]	A	G	5.853e^-4	0.961	INTRON nahoda
2R	5627113	2R_5627113_SNP [dm3] 2R_9739608_SNP [dm6]	A	G	5.862e^-4	0.961	INTRON sqa	TF binding site BDTNP1_TFBS_twi
3L	2647898	3L_2647898_SNP [dm3] 3L_2647898_SNP [dm6]	T	C	5.862e^-4	0.961	UPSTREAM CG1246 DOWNSTREAM CG1143 INTERGENIC
X	17551174	X_17551174_DEL [dm3] X_17657141_DEL [dm6]	ATAAAAATTTAATTAATATT...	A	5.870e^-4	0.961	UPSTREAM beta-Spec & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	14734179	2L_14734179_SNP [dm3] 2L_14734179_SNP [dm6]	A	T	5.874e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	20957923	3R_20957923_SNP [dm3] 3R_25132201_SNP [dm6]	G	A	5.878e^-4	0.961	INTRON Bili	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12212804	3R_12212804_DEL [dm3] 3R_16387082_DEL [dm6]	GA	G	5.879e^-4	0.961	INTRON ss	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	8702942	3R_8702942_SNP [dm3] 3R_12877220_SNP [dm6]	A	T	5.895e^-4	0.961	INTERGENIC
3L	5735001	3L_5735001_SNP [dm3] 3L_5741901_SNP [dm6]	G	A	5.895e^-4	0.961	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2R	16595342	2R_16595342_SNP [dm3] 2R_20707837_SNP [dm6]	C	A	5.901e^-4	0.961	INTRON dpr	TF binding site mE1_TFBS_HSA
2R	15795976	2R_15795976_SNP [dm3] 2R_19908471_SNP [dm6]	T	G	5.927e^-4	0.961	INTERGENIC
2R	7954471	2R_7954471_SNP [dm3] 2R_12066966_SNP [dm6]	G	A	5.947e^-4	0.961	INTRON CG8888	TF binding site mE1_TFBS_bab1
2R	16952475	2R_16952475_SNP [dm3] 2R_21064970_SNP [dm6]	G	A	5.956e^-4	0.961	UTR_5_PRIME Cht12 DOWNSTREAM Cht4
3L	17720659	3L_17720659_SNP [dm3] 3L_17727559_SNP [dm6]	A	G	5.977e^-4	0.961	SYNONYMOUS_CODING CG6052 INTRON Ccn	TF binding site mE1_TFBS_inv
3R	10037359	3R_10037359_SNP [dm3] 3R_14211637_SNP [dm6]	T	G	5.986e^-4	0.961	INTRON Dop1R1
3R	10037387	3R_10037387_SNP [dm3] 3R_14211665_SNP [dm6]	T	A	5.998e^-4	0.961	INTRON Dop1R1
2R	14239814	2R_14239814_SNP [dm3] 2R_18352309_SNP [dm6]	C	A	6.002e^-4	0.961	INTRON sbb
X	18730490	X_18730490_SNP [dm3] X_18836457_SNP [dm6]	C	T	6.004e^-4	0.961	INTRON Pvf1
2R	7558258	2R_7558258_SNP [dm3] 2R_11670753_SNP [dm6]	A	G	6.007e^-4	0.961	INTRON Roc2 & 1 other
X	5326668	X_5326668_SNP [dm3] X_5432635_SNP [dm6]	T	A	6.010e^-4	0.961	UPSTREAM CR44471 DOWNSTREAM CG15784 INTERGENIC
2L	12260238	2L_12260238_SNP [dm3] 2L_12260238_SNP [dm6]	A	G	6.011e^-4	0.961	INTRON aret
3L	12589320	3L_12589320_SNP [dm3] 3L_12596220_SNP [dm6]	C	T	6.012e^-4	0.961	DOWNSTREAM ara INTERGENIC
2R	7600074	2R_7600074_SNP [dm3] 2R_11712569_SNP [dm6]	T	C	6.018e^-4	0.961	UTR_5_PRIME pyr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	14999896	3R_14999896_INS [dm3] 3R_19174174_INS [dm6]	A	AAAAGCAAAAAATG...	6.020e^-4	0.961	INTERGENIC
2R	12827946	2R_12827946_SNP [dm3] 2R_16940441_SNP [dm6]	A	T	6.026e^-4	0.961	INTRON Pkc53E
2R	15522945	2R_15522945_SNP [dm3] 2R_19635440_SNP [dm6]	A	G	6.028e^-4	0.961	NON_SYNONYMOUS_CODING CG42753 DOWNSTREAM CR44503
3R	25684669	3R_25684669_SNP [dm3] 3R_29858947_SNP [dm6]	A	G	6.029e^-4	0.961	UPSTREAM CG7824 DOWNSTREAM CR31032 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	25684886	3R_25684886_SNP [dm3] 3R_29859164_SNP [dm6]	G	A	6.029e^-4	0.961	UPSTREAM CG7824 DOWNSTREAM CG15514 EXON CR31032	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	7559590	2R_7559590_SNP [dm3] 2R_11672085_SNP [dm6]	C	A	6.036e^-4	0.961	UTR_5_PRIME Tret1-1 INTRON Roc2 & 1 other
3R	24414798	3R_24414798_SNP [dm3] 3R_28589076_SNP [dm6]	T	G	6.046e^-4	0.961	DOWNSTREAM MRE23 EXON MRE23	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23259677	3R_23259677_DEL [dm3] 3R_27433955_DEL [dm6]	AAGC	TT	6.046e^-4	0.961	INTRON side
2R	18338069	2R_18338069_SNP [dm3] 2R_22450564_SNP [dm6]	C	A	6.052e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17391695	2R_17391695_SNP [dm3] 2R_21504190_SNP [dm6]	C	A	6.058e^-4	0.961	INTRON MESK2	TF binding site mE1_TFBS_inv
3L	6927623	3L_6927623_SNP [dm3] 3L_6934523_SNP [dm6]	G	A	6.063e^-4	0.961	SYNONYMOUS_CODING CG14820
2R	13666961	2R_13666961_SNP [dm3] 2R_17779456_SNP [dm6]	T	G	6.075e^-4	0.961	SYNONYMOUS_CODING fab1 UTR_3_PRIME CG33981	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20358499	2L_20358499_SNP [dm3] 2L_20358499_SNP [dm6]	G	A	6.080e^-4	0.961	NON_SYNONYMOUS_CODING RtGEF INTRON RtGEF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4626891	3L_4626891_SNP [dm3] 3L_4626891_SNP [dm6]	A	T	6.081e^-4	0.961	UTR_5_PRIME Rpd3 UPSTREAM Src64B EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2R	15915021	2R_15915021_SNP [dm3] 2R_20027516_SNP [dm6]	T	C	6.081e^-4	0.961	INTERGENIC
3R	27169612	3R_27169612_SNP [dm3] 3R_31343890_SNP [dm6]	A	G	6.091e^-4	0.961	INTRON CG34347
3L	10197336	3L_10197336_SNP [dm3] 3L_10204236_SNP [dm6]	A	G	6.093e^-4	0.961	INTERGENIC
2R	2405774	2R_2405774_SNP [dm3] 2R_6518269_SNP [dm6]	G	T	6.094e^-4	0.961	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	1073945	3R_1073945_SNP [dm3] 3R_5248223_SNP [dm6]	A	G	6.095e^-4	0.961	INTRON CG12163
3R	21759607	3R_21759607_SNP [dm3] 3R_25933885_SNP [dm6]	C	T	6.098e^-4	0.961	INTRON CCAP-R
3R	24387804	3R_24387804_SNP [dm3] 3R_28562082_SNP [dm6]	C	G	6.099e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12603203	3R_12603203_SNP [dm3] 3R_16777481_SNP [dm6]	G	A	6.099e^-4	0.961	INTERGENIC
3L	1847930	3L_1847930_SNP [dm3] 3L_1847930_SNP [dm6]	A	T	6.109e^-4	0.961	INTERGENIC
3R	12054322	3R_12054322_SNP [dm3] 3R_16228600_SNP [dm6]	G	C	6.114e^-4	0.961	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25684267	3R_25684267_SNP [dm3] 3R_29858545_SNP [dm6]	C	T	6.139e^-4	0.961	NON_SYNONYMOUS_CODING CG7824 DOWNSTREAM CR31032	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens mE1_TFBS_ttk
3R	17064834	3R_17064834_INS [dm3] 3R_21239112_INS [dm6]	C	GATCA	6.141e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
X	20432525	X_20432525_SNP [dm3] X_20561498_SNP [dm6]	C	G	6.156e^-4	0.961	INTRON RunxB
3R	24990907	3R_24990907_SNP [dm3] 3R_29165185_SNP [dm6]	G	A	6.157e^-4	0.961	UPSTREAM CG11898 DOWNSTREAM CG11897 INTERGENIC
3R	14635365	3R_14635365_SNP [dm3] 3R_18809643_SNP [dm6]	C	G	6.166e^-4	0.961	INTRON CG18208
3L	4626808	3L_4626808_SNP [dm3] 3L_4626808_SNP [dm6]	T	G	6.177e^-4	0.961	UTR_5_PRIME Rpd3 UPSTREAM Src64B EXON CR45438	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	17270749	3L_17270749_SNP [dm3] 3L_17277649_SNP [dm6]	G	T	6.178e^-4	0.961	INTERGENIC
2L	10267043	2L_10267043_SNP [dm3] 2L_10267043_SNP [dm6]	G	A	6.182e^-4	0.961	SYNONYMOUS_CODING CG4953 DOWNSTREAM Mob3
X	5751420	X_5751420_DEL [dm3] X_5857387_DEL [dm6]	GAAAAA	C	6.187e^-4	0.961	INTERGENIC
3R	13464812	3R_13464812_SNP [dm3] 3R_17639090_SNP [dm6]	C	T	6.191e^-4	0.961	INTRON CG43175 EXON CR45222
3R	6320696	3R_6320696_SNP [dm3] 3R_10494974_SNP [dm6]	C	A	6.191e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3523284	3L_3523284_SNP [dm3] 3L_3523284_SNP [dm6]	C	T	6.204e^-4	0.961	INTRON Eip63E EXON CR45043
3R	23517865	3R_23517865_INS [dm3] 3R_27692143_INS [dm6]	G	GG	6.204e^-4	0.961	UTR_3_PRIME CG12880	TF binding site mE1_TFBS_chinmo
3R	25520810	3R_25520810_SNP [dm3] 3R_29695088_SNP [dm6]	T	C	6.206e^-4	0.961	INTRON dmrt99B	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4461756	3L_4461756_SNP [dm3] 3L_4461756_SNP [dm6]	A	G	6.216e^-4	0.961	UPSTREAM CG15023 INTERGENIC
3R	17631644	3R_17631644_SNP [dm3] 3R_21805922_SNP [dm6]	A	G	6.223e^-4	0.961	INTRON CASK
2R	14440871	2R_14440871_DEL [dm3] 2R_18553366_DEL [dm6]	GG	G	6.224e^-4	0.961	DOWNSTREAM GEFmeso INTERGENIC
X	9585547	X_9585547_SNP [dm3] X_9691514_SNP [dm6]	C	T	6.238e^-4	0.961	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	2751360	3L_2751360_SNP [dm3] 3L_2751360_SNP [dm6]	G	T	6.239e^-4	0.961	INTRON Mrtf
2R	12184794	2R_12184794_SNP [dm3] 2R_16297289_SNP [dm6]	T	A	6.257e^-4	0.961	DOWNSTREAM CG43265 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	17228440	2L_17228440_DEL [dm3] 2L_17228440_DEL [dm6]	GAAGG	A	6.264e^-4	0.961	INTRON beat-IIIc
3R	10429398	3R_10429398_SNP [dm3] 3R_14603676_SNP [dm6]	A	T	6.274e^-4	0.961	INTRON stumps
2L	18791971	2L_18791971_SNP [dm3] 2L_18791971_SNP [dm6]	G	T	6.278e^-4	0.961	INTRON ham
3R	24679232	3R_24679232_SNP [dm3] 3R_28853510_SNP [dm6]	T	G	6.291e^-4	0.961	DOWNSTREAM Inx3 INTRON spg
3L	14293042	3L_14293042_SNP [dm3] 3L_14299942_SNP [dm6]	G	C	6.292e^-4	0.961	INTRON fz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12580462	2R_12580462_SNP [dm3] 2R_16692957_SNP [dm6]	A	C	6.293e^-4	0.961	INTRON CG30463 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6887257	2R_6887257_SNP [dm3] 2R_10999752_SNP [dm6]	C	T	6.302e^-4	0.961	INTRON luna
2R	19785888	2R_19785888_SNP [dm3] 2R_23898365_SNP [dm6]	T	A	6.309e^-4	0.961	UPSTREAM Lpt & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med
3R	26879769	3R_26879769_SNP [dm3] 3R_31054047_SNP [dm6]	C	T	6.310e^-4	0.961	UPSTREAM l_3_03670 DOWNSTREAM dco INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
2L	16067120	2L_16067120_INS [dm3] 2L_16067120_INS [dm6]	A	AAGTAAATAATTACAGTTTA...	6.312e^-4	0.961	INTRON beat-Ia
2R	6162336	2R_6162336_SNP [dm3] 2R_10274831_SNP [dm6]	A	C	6.322e^-4	0.961	UPSTREAM CAP INTRON CAP
2R	19410130	2R_19410130_SNP [dm3] 2R_23522607_SNP [dm6]	G	C	6.325e^-4	0.961	INTRON RabX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	14499520	3L_14499520_SNP [dm3] 3L_14506420_SNP [dm6]	G	C	6.346e^-4	0.961	INTRON bbg
3L	14499522	3L_14499522_SNP [dm3] 3L_14506422_SNP [dm6]	A	G	6.346e^-4	0.961	INTRON bbg
2R	15823728	2R_15823728_SNP [dm3] 2R_19936223_SNP [dm6]	A	C	6.347e^-4	0.961	INTERGENIC
2L	3111809	2L_3111809_SNP [dm3] 2L_3111809_SNP [dm6]	C	A	6.359e^-4	0.961	DOWNSTREAM PpD6 INTRON toc

By genomic position
Variant impact
Gene name

se_Glycogen phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results