DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.269e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.0033	0.0831

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1831 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	19111000	2L_19111000_SNP [dm3] 2L_19111000_SNP [dm6]	T	G	9.667e^-7	0.875	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	19110975	2L_19110975_DEL [dm3] 2L_19110975_DEL [dm6]	TT	A	1.070e^-6	0.875	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
2L	19110965	2L_19110965_DEL [dm3] 2L_19110965_DEL [dm6]	ACTT	A	1.561e^-6	0.875	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	11299771	3R_11299771_SNP [dm3] 3R_15474049_SNP [dm6]	C	T	2.971e^-6	0.875	INTRON AdamTS-A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	19110676	2L_19110676_SNP [dm3] 2L_19110676_SNP [dm6]	A	G	3.316e^-6	0.875	DOWNSTREAM CR44905 INTRON amd
2L	19110876	2L_19110876_SNP [dm3] 2L_19110876_SNP [dm6]	T	A	3.375e^-6	0.875	UPSTREAM amd DOWNSTREAM CR44905 INTRON amd	TF binding site mE1_TFBS_HSA
2L	13253651	2L_13253651_SNP [dm3] 2L_13253651_SNP [dm6]	C	T	3.762e^-6	0.875	INTRON CG31728
2L	19110970	2L_19110970_SNP [dm3] 2L_19110970_SNP [dm6]	T	A	4.217e^-6	0.875	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	3325944	X_3325944_INS [dm3] X_3431911_INS [dm6]	A	AG	4.310e^-6	0.875	INTRON CR44999 & 1 other
3L	16862728	3L_16862728_DEL [dm3] 3L_16869628_DEL [dm6]	TCCATGTTGCGTTTTTGCTA...	T	5.821e^-6	0.875	INTRON Lmpt
X	18912083	X_18912083_SNP [dm3] X_19018050_SNP [dm6]	T	G	6.008e^-6	0.875	INTRON CG43759
2L	19114243	2L_19114243_SNP [dm3] 2L_19114243_SNP [dm6]	T	C	6.132e^-6	0.875	UPSTREAM CG10561 DOWNSTREAM amd INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	1072802	3L_1072802_SNP [dm3] 3L_1072802_SNP [dm6]	C	T	6.697e^-6	0.875	INTRON bab1
2L	1976992	2L_1976992_SNP [dm3] 2L_1976992_SNP [dm6]	C	A	7.065e^-6	0.875	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	27505454	3R_27505454_SNP [dm3] 3R_31679732_SNP [dm6]	C	T	7.089e^-6	0.875	SYNONYMOUS_CODING CG11550 DOWNSTREAM CR44091	TF binding site mE1_TFBS_sens
2L	19112643	2L_19112643_SNP [dm3] 2L_19112643_SNP [dm6]	A	T	7.532e^-6	0.875	INTRON amd	TF binding site mE1_TFBS_cad
3L	4308579	3L_4308579_SNP [dm3] 3L_4308579_SNP [dm6]	A	T	8.358e^-6	0.914	UPSTREAM dyl INTERGENIC
3L	4717453	3L_4717453_SNP [dm3] 3L_4717453_SNP [dm6]	T	C	9.297e^-6	0.935	INTRON RhoGEF64C
X	15269119	X_15269119_SNP [dm3] X_15375086_SNP [dm6]	T	A	1.074e^-5	0.935	INTRON acj6	TF binding site BDTNP1_TFBS_dl
2R	19501189	2R_19501189_SNP [dm3] 2R_23613666_SNP [dm6]	T	A	1.139e^-5	0.935	INTRON CG17664 & 1 other
2L	19114791	2L_19114791_SNP [dm3] 2L_19114791_SNP [dm6]	A	T	1.210e^-5	0.935	UTR_5_PRIME CG10561 DOWNSTREAM amd	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Ubx
2L	15880784	2L_15880784_SNP [dm3] 2L_15880784_SNP [dm6]	G	C	1.314e^-5	0.935	UPSTREAM CG7653 INTERGENIC
X	19225147	X_19225147_SNP [dm3] X_19331114_SNP [dm6]	T	C	1.324e^-5	0.935	INTRON nAChRalpha7
2L	19110803	2L_19110803_DEL [dm3] 2L_19110803_DEL [dm6]	ATA	A	1.408e^-5	0.935	DOWNSTREAM CR44905 INTRON amd
2R	9844605	2R_9844605_SNP [dm3] 2R_13957100_SNP [dm6]	C	T	1.421e^-5	0.935	INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	1070482	3L_1070482_SNP [dm3] 3L_1070482_SNP [dm6]	T	G	1.431e^-5	0.935	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2R	17774038	2R_17774038_SNP [dm3] 2R_21886533_SNP [dm6]	G	A	1.493e^-5	0.935	INTRON Fili
3R	12755943	3R_12755943_SNP [dm3] 3R_16930221_SNP [dm6]	C	T	1.503e^-5	0.935	INTRON Abd-B
3R	14085272	3R_14085272_SNP [dm3] 3R_18259550_SNP [dm6]	A	G	1.594e^-5	0.935	INTERGENIC
3L	7433864	3L_7433864_SNP [dm3] 3L_7440764_SNP [dm6]	G	A	1.631e^-5	0.935	UPSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13956238	X_13956238_SNP [dm3] X_14062205_SNP [dm6]	C	T	1.718e^-5	0.935	UPSTREAM Ste:CG33236 INTERGENIC
3L	12066614	3L_12066614_SNP [dm3] 3L_12073514_SNP [dm6]	C	T	1.877e^-5	0.935	INTRON Sema-5c
2L	10815846	2L_10815846_SNP [dm3] 2L_10815846_SNP [dm6]	A	G	2.026e^-5	0.935	INTRON Nos
2L	19114608	2L_19114608_SNP [dm3] 2L_19114608_SNP [dm6]	C	A	2.068e^-5	0.935	DOWNSTREAM amd INTRON CG10561	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	15435924	2R_15435924_SNP [dm3] 2R_19548419_SNP [dm6]	C	G	2.096e^-5	0.935	INTRON sm
2R	15435937	2R_15435937_SNP [dm3] 2R_19548432_SNP [dm6]	A	T	2.096e^-5	0.935	INTRON sm
3L	1070468	3L_1070468_SNP [dm3] 3L_1070468_SNP [dm6]	C	T	2.176e^-5	0.935	INTRON bab1	TF binding site BDTNP1_TFBS_twi
3L	14473921	3L_14473921_SNP [dm3] 3L_14480821_SNP [dm6]	G	A	2.187e^-5	0.935	INTRON bbg
3L	14473850	3L_14473850_SNP [dm3] 3L_14480750_SNP [dm6]	T	G	2.210e^-5	0.935	INTRON bbg
3R	20521333	3R_20521333_SNP [dm3] 3R_24695611_SNP [dm6]	T	C	2.227e^-5	0.935	INTRON slo
2R	2683546	2R_2683546_INS [dm3] 2R_6796041_INS [dm6]	A	AAAA	2.289e^-5	0.935	INTRON Epac
X	13956224	X_13956224_SNP [dm3] X_14062191_SNP [dm6]	C	T	2.329e^-5	0.935	UPSTREAM Ste:CG33236 INTERGENIC
2L	16114160	2L_16114160_SNP [dm3] 2L_16114160_SNP [dm6]	A	G	2.344e^-5	0.935	INTERGENIC
3R	25052930	3R_25052930_SNP [dm3] 3R_29227208_SNP [dm6]	C	T	2.418e^-5	0.935	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3R	27363971	3R_27363971_SNP [dm3] 3R_31538249_SNP [dm6]	A	C	2.472e^-5	0.935	INTERGENIC
3R	27364042	3R_27364042_SNP [dm3] 3R_31538320_SNP [dm6]	T	C	2.472e^-5	0.935	INTERGENIC
3R	27364045	3R_27364045_SNP [dm3] 3R_31538323_SNP [dm6]	G	C	2.472e^-5	0.935	INTERGENIC
2R	1763232	2R_1763232_SNP [dm3] 2R_5875727_SNP [dm6]	T	G	2.485e^-5	0.935	INTERGENIC
X	18912371	X_18912371_SNP [dm3] X_19018338_SNP [dm6]	G	C	2.512e^-5	0.935	INTRON CG43759
2R	5559779	2R_5559779_SNP [dm3] 2R_9672274_SNP [dm6]	T	G	2.580e^-5	0.935	INTRON Mmp2
3L	21727794	3L_21727794_SNP [dm3] 3L_21734694_SNP [dm6]	G	T	2.613e^-5	0.935	NON_SYNONYMOUS_CODING CG14573	TF binding site mE1_TFBS_cad
3R	14028611	3R_14028611_SNP [dm3] 3R_18202889_SNP [dm6]	C	T	2.615e^-5	0.935	INTRON CG7985
3L	11630062	3L_11630062_SNP [dm3] 3L_11636962_SNP [dm6]	C	T	2.725e^-5	0.938	INTRON CG32091
2L	19111870	2L_19111870_SNP [dm3] 2L_19111870_SNP [dm6]	G	T	2.757e^-5	0.938	UTR_5_PRIME amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	19224891	X_19224891_SNP [dm3] X_19330858_SNP [dm6]	A	C	2.808e^-5	0.938	INTRON nAChRalpha7
2L	6738857	2L_6738857_SNP [dm3] 2L_6738857_SNP [dm6]	T	G	2.829e^-5	0.938	SYNONYMOUS_CODING TTLL3A	TF binding site mE1_TFBS_cad
3L	7433848	3L_7433848_SNP [dm3] 3L_7440748_SNP [dm6]	A	C	2.891e^-5	0.938	UPSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25052899	3R_25052899_SNP [dm3] 3R_29227177_SNP [dm6]	A	C	3.056e^-5	0.938	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3L	4717449	3L_4717449_SNP [dm3] 3L_4717449_SNP [dm6]	A	G	3.060e^-5	0.938	INTRON RhoGEF64C
3L	11630030	3L_11630030_SNP [dm3] 3L_11636930_SNP [dm6]	C	T	3.083e^-5	0.938	INTRON CG32091
2L	19114305	2L_19114305_SNP [dm3] 2L_19114305_SNP [dm6]	T	A	3.113e^-5	0.938	UPSTREAM CG10561 DOWNSTREAM amd INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3L	12872208	3L_12872208_SNP [dm3] 3L_12879108_SNP [dm6]	G	A	3.199e^-5	0.938	INTERGENIC
2L	8621917	2L_8621917_SNP [dm3] 2L_8621917_SNP [dm6]	A	G	3.269e^-5	0.938	INTRON Sema-1a
2R	9864341	2R_9864341_SNP [dm3] 2R_13976836_SNP [dm6]	G	A	3.308e^-5	0.938	SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	5559746	2R_5559746_SNP [dm3] 2R_9672241_SNP [dm6]	T	A	3.451e^-5	0.938	INTRON Mmp2
2R	16952374	2R_16952374_INS [dm3] 2R_21064869_INS [dm6]	T	TT	3.481e^-5	0.938	UTR_5_PRIME Cht12 DOWNSTREAM Cht4
2R	9864393	2R_9864393_SNP [dm3] 2R_13976888_SNP [dm6]	T	C	3.500e^-5	0.938	NON_SYNONYMOUS_CODING CG6701	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19110780	2L_19110780_SNP [dm3] 2L_19110780_SNP [dm6]	T	A	3.586e^-5	0.938	DOWNSTREAM CR44905 INTRON amd
X	13448658	X_13448658_SNP [dm3] X_13554625_SNP [dm6]	T	A	3.715e^-5	0.938	UPSTREAM CG11816 INTRON CG11816
3L	11146285	3L_11146285_SNP [dm3] 3L_11153185_SNP [dm6]	C	T	3.830e^-5	0.938	INTRON CG32082
3R	26088449	3R_26088449_SNP [dm3] 3R_30262727_SNP [dm6]	G	C	3.850e^-5	0.938	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	12166481	2L_12166481_SNP [dm3] 2L_12166481_SNP [dm6]	G	A	3.873e^-5	0.938	SYNONYMOUS_CODING ZnT33D UTR_3_PRIME ZnT33D INTRON CG31760
2L	8622333	2L_8622333_SNP [dm3] 2L_8622333_SNP [dm6]	C	A	3.924e^-5	0.938	INTRON Sema-1a
3L	16032118	3L_16032118_SNP [dm3] 3L_16039018_SNP [dm6]	A	T	3.955e^-5	0.938	NON_SYNONYMOUS_CODING th	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17463113	2R_17463113_SNP [dm3] 2R_21575608_SNP [dm6]	G	A	3.974e^-5	0.938	INTRON CG10440	TF binding site BDTNP1_TFBS_twi
2L	17054074	2L_17054074_SNP [dm3] 2L_17054074_SNP [dm6]	C	T	4.147e^-5	0.938	INTERGENIC
2L	19115203	2L_19115203_SNP [dm3] 2L_19115203_SNP [dm6]	T	C	4.282e^-5	0.938	SYNONYMOUS_CODING CG10561	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3R	21390277	3R_21390277_SNP [dm3] 3R_25564555_SNP [dm6]	G	T	4.302e^-5	0.938	INTRON msi
2R	5536166	2R_5536166_SNP [dm3] 2R_9648661_SNP [dm6]	C	A	4.315e^-5	0.938	INTRON Mmp2
2R	18477447	2R_18477447_SNP [dm3] 2R_22589942_SNP [dm6]	G	A	4.547e^-5	0.938	INTRON dnr1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	17774048	2R_17774048_DEL [dm3] 2R_21886543_DEL [dm6]	TTAT	T	4.627e^-5	0.938	INTRON Fili
3L	7030874	3L_7030874_SNP [dm3] 3L_7037774_SNP [dm6]	G	A	4.644e^-5	0.938	INTRON Mp
2R	19505717	2R_19505717_SNP [dm3] 2R_23618194_SNP [dm6]	T	A	4.664e^-5	0.938	INTERGENIC
2R	19505742	2R_19505742_SNP [dm3] 2R_23618219_SNP [dm6]	G	C	4.664e^-5	0.938	INTERGENIC
2L	18717379	2L_18717379_SNP [dm3] 2L_18717379_SNP [dm6]	A	G	4.727e^-5	0.938	INTRON CG10348
2R	12166839	2R_12166839_SNP [dm3] 2R_16279334_SNP [dm6]	A	G	4.728e^-5	0.938	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	5559821	2R_5559821_SNP [dm3] 2R_9672316_SNP [dm6]	A	T	4.751e^-5	0.938	INTRON Mmp2
2L	15884735	2L_15884735_SNP [dm3] 2L_15884735_SNP [dm6]	G	C	4.763e^-5	0.938	INTERGENIC
2L	19114180	2L_19114180_SNP [dm3] 2L_19114180_SNP [dm6]	T	C	4.830e^-5	0.938	UPSTREAM CG10561 DOWNSTREAM amd INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_Kr mE1_TFBS_Ubx
2L	19114208	2L_19114208_SNP [dm3] 2L_19114208_SNP [dm6]	C	T	4.830e^-5	0.938	UPSTREAM CG10561 DOWNSTREAM amd INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2L	19113237	2L_19113237_SNP [dm3] 2L_19113237_SNP [dm6]	C	T	4.890e^-5	0.938	SYNONYMOUS_CODING amd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14412734	2R_14412734_SNP [dm3] 2R_18525229_SNP [dm6]	A	G	5.110e^-5	0.938	UTR_3_PRIME CG43066
2R	3291787	2R_3291787_SNP [dm3] 2R_7404282_SNP [dm6]	G	C	5.119e^-5	0.938	NON_SYNONYMOUS_CODING CG43267 DOWNSTREAM CG43123 INTRON Eaf
3R	27477045	3R_27477045_SNP [dm3] 3R_31651323_SNP [dm6]	T	C	5.189e^-5	0.938	INTRON kek6
2L	16114121	2L_16114121_SNP [dm3] 2L_16114121_SNP [dm6]	A	C	5.197e^-5	0.938	INTERGENIC
2R	6460799	2R_6460799_SNP [dm3] 2R_10573294_SNP [dm6]	T	C	5.296e^-5	0.938	INTRON psq
2L	6618210	2L_6618210_SNP [dm3] 2L_6618210_SNP [dm6]	T	C	5.416e^-5	0.938	SYNONYMOUS_CODING CG11320 UPSTREAM CR44913	TF binding site mE1_TFBS_cad
3R	13803253	3R_13803253_SNP [dm3] 3R_17977531_SNP [dm6]	T	C	5.417e^-5	0.938	INTRON cpo
2L	17492813	2L_17492813_SNP [dm3] 2L_17492813_SNP [dm6]	T	C	5.425e^-5	0.938	UPSTREAM qua INTRON qua
2L	18766424	2L_18766424_SNP [dm3] 2L_18766424_SNP [dm6]	C	T	5.479e^-5	0.938	INTRON ham
2L	17054291	2L_17054291_SNP [dm3] 2L_17054291_SNP [dm6]	A	T	5.839e^-5	0.938	INTERGENIC
2L	8106969	2L_8106969_SNP [dm3] 2L_8106969_SNP [dm6]	T	C	5.880e^-5	0.938	SYNONYMOUS_CODING Bsg
2L	19111068	2L_19111068_SNP [dm3] 2L_19111068_SNP [dm6]	T	G	6.080e^-5	0.938	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
X	14956123	X_14956123_SNP [dm3] X_15062090_SNP [dm6]	T	C	6.125e^-5	0.938	INTRON hiw
2R	4560341	2R_4560341_SNP [dm3] 2R_8672836_SNP [dm6]	T	G	6.161e^-5	0.938	INTRON Acsl
2R	17782629	2R_17782629_SNP [dm3] 2R_21895124_SNP [dm6]	T	A	6.254e^-5	0.938	INTRON Fili
3L	7023540	3L_7023540_SNP [dm3] 3L_7030440_SNP [dm6]	T	A	6.332e^-5	0.938	INTRON Mp
2R	17782657	2R_17782657_SNP [dm3] 2R_21895152_SNP [dm6]	C	T	6.363e^-5	0.938	INTRON Fili
2R	13607379	2R_13607379_INS [dm3] 2R_17719874_INS [dm6]	C	AT	6.402e^-5	0.938	UPSTREAM CG6424 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	20521334	3R_20521334_INS [dm3] 3R_24695612_INS [dm6]	T	TC	6.595e^-5	0.938	INTRON slo
2L	7081146	2L_7081146_SNP [dm3] 2L_7081146_SNP [dm6]	C	A	6.602e^-5	0.938	INTRON Pvf2
2L	17054072	2L_17054072_SNP [dm3] 2L_17054072_SNP [dm6]	A	G	6.671e^-5	0.938	INTERGENIC
3L	11048217	3L_11048217_SNP [dm3] 3L_11055117_SNP [dm6]	C	A	6.931e^-5	0.938	UPSTREAM CG7888 INTRON CG7888
3R	14028608	3R_14028608_SNP [dm3] 3R_18202886_SNP [dm6]	G	A	6.938e^-5	0.938	INTRON CG7985
2L	17054323	2L_17054323_SNP [dm3] 2L_17054323_SNP [dm6]	G	A	6.968e^-5	0.938	INTERGENIC
2R	2678465	2R_2678465_SNP [dm3] 2R_6790960_SNP [dm6]	A	G	7.013e^-5	0.938	INTRON Epac
2L	15884780	2L_15884780_SNP [dm3] 2L_15884780_SNP [dm6]	G	T	7.018e^-5	0.938	INTERGENIC
2R	17993848	2R_17993848_SNP [dm3] 2R_22106343_SNP [dm6]	T	A	7.036e^-5	0.938	UTR_3_PRIME Vrp1 DOWNSTREAM CG6613
3R	14523117	3R_14523117_SNP [dm3] 3R_18697395_SNP [dm6]	T	G	7.045e^-5	0.938	INTERGENIC
2L	17228505	2L_17228505_SNP [dm3] 2L_17228505_SNP [dm6]	A	G	7.108e^-5	0.938	INTRON beat-IIIc
2R	9870771	2R_9870771_SNP [dm3] 2R_13983266_SNP [dm6]	C	T	7.130e^-5	0.938	UTR_5_PRIME Ctf4 UPSTREAM CG8067	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
3L	15879546	3L_15879546_SNP [dm3] 3L_15886446_SNP [dm6]	G	A	7.368e^-5	0.938	UPSTREAM CR44050 INTRON pHCl
3R	16986135	3R_16986135_SNP [dm3] 3R_21160413_SNP [dm6]	A	G	7.461e^-5	0.938	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
X	3325830	X_3325830_SNP [dm3] X_3431797_SNP [dm6]	G	A	7.482e^-5	0.938	INTRON CR44999 & 1 other
3R	11282664	3R_11282664_DEL [dm3] 3R_15456942_DEL [dm6]	AATGGCGC	A	7.498e^-5	0.938	INTRON AdamTS-A
2R	7106709	2R_7106709_SNP [dm3] 2R_11219204_SNP [dm6]	T	C	7.562e^-5	0.938	START_GAINED CG9084 UTR_5_PRIME CG9084 UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	6863339	2R_6863339_SNP [dm3] 2R_10975834_SNP [dm6]	T	C	7.604e^-5	0.938	INTERGENIC
2L	19114272	2L_19114272_SNP [dm3] 2L_19114272_SNP [dm6]	A	T	7.705e^-5	0.938	UPSTREAM CG10561 DOWNSTREAM amd INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
3R	21510897	3R_21510897_SNP [dm3] 3R_25685175_SNP [dm6]	A	T	7.841e^-5	0.938	UPSTREAM RpL27 DOWNSTREAM CLS INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	17774110	2R_17774110_SNP [dm3] 2R_21886605_SNP [dm6]	G	T	7.848e^-5	0.938	INTRON Fili
3L	16029471	3L_16029471_SNP [dm3] 3L_16036371_SNP [dm6]	G	A	7.860e^-5	0.938	NON_SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3R	17891625	3R_17891625_SNP [dm3] 3R_22065903_SNP [dm6]	A	G	7.924e^-5	0.938	INTRON how
2L	10118010	2L_10118010_SNP [dm3] 2L_10118010_SNP [dm6]	G	A	7.934e^-5	0.938	SYNONYMOUS_CODING CG34109 INTRON CG44153
3R	17910065	3R_17910065_SNP [dm3] 3R_22084343_SNP [dm6]	A	G	7.975e^-5	0.938	DOWNSTREAM CG13408 INTERGENIC
4	447454	4_447454_SNP [dm3] 4_426828_SNP [dm6]	G	A	7.984e^-5	0.938	UPSTREAM CR44024 DOWNSTREAM CR43437 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	4308624	3L_4308624_SNP [dm3] 3L_4308624_SNP [dm6]	C	G	8.009e^-5	0.938	UPSTREAM dyl INTERGENIC
2L	15865336	2L_15865336_SNP [dm3] 2L_15865336_SNP [dm6]	T	G	8.047e^-5	0.938	NON_SYNONYMOUS_CODING CG42792
2R	15436058	2R_15436058_SNP [dm3] 2R_19548553_SNP [dm6]	G	A	8.104e^-5	0.938	INTRON sm
X	4420818	X_4420818_SNP [dm3] X_4526785_SNP [dm6]	G	A	8.265e^-5	0.938	INTRON CR32773	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16795427	2R_16795427_SNP [dm3] 2R_20907922_SNP [dm6]	C	T	8.289e^-5	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	5937722	2L_5937722_SNP [dm3] 2L_5937722_SNP [dm6]	C	G	8.324e^-5	0.938	SYNONYMOUS_CODING dsf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3455643	2L_3455643_SNP [dm3] 2L_3455643_SNP [dm6]	A	G	8.349e^-5	0.938	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
3R	17703047	3R_17703047_SNP [dm3] 3R_21877325_SNP [dm6]	T	G	8.452e^-5	0.938	SYNONYMOUS_CODING CG6656 UPSTREAM P5CDh2 DOWNSTREAM CG34148	TF binding site mE1_TFBS_sens
2R	11930646	2R_11930646_SNP [dm3] 2R_16043141_SNP [dm6]	C	T	8.463e^-5	0.938	SYNONYMOUS_CODING SP2353
3L	7023585	3L_7023585_SNP [dm3] 3L_7030485_SNP [dm6]	T	C	8.484e^-5	0.938	INTRON Mp
2R	9866789	2R_9866789_SNP [dm3] 2R_13979284_SNP [dm6]	C	T	8.719e^-5	0.938	SYNONYMOUS_CODING CG6701	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17120601	X_17120601_SNP [dm3] X_17226568_SNP [dm6]	C	T	8.731e^-5	0.938	UTR_5_PRIME CG10598 UPSTREAM CG10598
3L	22790234	3L_22790234_SNP [dm3] 3L_22797134_SNP [dm6]	T	C	8.750e^-5	0.938	UTR_3_PRIME jim
2L	9850429	2L_9850429_SNP [dm3] 2L_9850429_SNP [dm6]	C	T	8.764e^-5	0.938	INTRON nAChRalpha6
3L	1417103	3L_1417103_SNP [dm3] 3L_1417103_SNP [dm6]	A	C	8.766e^-5	0.938	SYNONYMOUS_CODING FucTD INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16626102	X_16626102_SNP [dm3] X_16732069_SNP [dm6]	A	T	8.776e^-5	0.938	INTRON CG9634 & 1 other	TF binding site mE1_TFBS_chinmo
3L	9574603	3L_9574603_SNP [dm3] 3L_9581503_SNP [dm6]	C	T	8.838e^-5	0.938	INTRON CG42673
X	20600859	X_20600859_SNP [dm3] X_20729832_SNP [dm6]	A	G	8.878e^-5	0.938	INTERGENIC
2L	11018350	2L_11018350_SNP [dm3] 2L_11018350_SNP [dm6]	C	T	8.920e^-5	0.938	SYNONYMOUS_CODING CG14913 INTRON Samuel
2R	9692774	2R_9692774_SNP [dm3] 2R_13805269_SNP [dm6]	C	T	8.942e^-5	0.938	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
3L	15971285	3L_15971285_SNP [dm3] 3L_15978185_SNP [dm6]	T	C	9.000e^-5	0.938	SYNONYMOUS_CODING CG17029 UPSTREAM CG17028 INTRON brm
2L	17130199	2L_17130199_SNP [dm3] 2L_17130199_SNP [dm6]	A	T	9.016e^-5	0.938	UPSTREAM beat-IIIa & 1 other INTERGENIC
3L	16023778	3L_16023778_SNP [dm3] 3L_16030678_SNP [dm6]	A	C	9.035e^-5	0.938	SYNONYMOUS_CODING Notum UPSTREAM mir-4941	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7678078	2L_7678078_SNP [dm3] 2L_7678078_SNP [dm6]	A	G	9.039e^-5	0.938	UPSTREAM Myo28B1 INTRON Myo28B1
3R	26593721	3R_26593721_SNP [dm3] 3R_30767999_SNP [dm6]	A	T	9.092e^-5	0.938	INTRON zfh1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_inv
3R	27505219	3R_27505219_SNP [dm3] 3R_31679497_SNP [dm6]	A	T	9.117e^-5	0.938	INTRON CG11550	TF binding site mE1_TFBS_sens
3L	4976276	3L_4976276_SNP [dm3] 3L_4976276_SNP [dm6]	C	A	9.182e^-5	0.938	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	17160616	2L_17160616_SNP [dm3] 2L_17160616_SNP [dm6]	C	T	9.249e^-5	0.938	INTRON beat-IIIa & 1 other
2R	19505719	2R_19505719_SNP [dm3] 2R_23618196_SNP [dm6]	A	T	9.276e^-5	0.938	INTERGENIC
2R	19505720	2R_19505720_SNP [dm3] 2R_23618197_SNP [dm6]	G	A	9.276e^-5	0.938	INTERGENIC
3L	4976282	3L_4976282_SNP [dm3] 3L_4976282_SNP [dm6]	T	A	9.288e^-5	0.938	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4976293	3L_4976293_SNP [dm3] 3L_4976293_SNP [dm6]	C	T	9.288e^-5	0.938	UPSTREAM Con INTRON Con	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	11146117	3L_11146117_SNP [dm3] 3L_11153017_SNP [dm6]	G	A	9.366e^-5	0.938	INTRON CG32082
3R	27364484	3R_27364484_SNP [dm3] 3R_31538762_SNP [dm6]	T	A	9.378e^-5	0.938	INTERGENIC
X	16869923	X_16869923_SNP [dm3] X_16975890_SNP [dm6]	C	A	9.383e^-5	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2R	9844941	2R_9844941_SNP [dm3] 2R_13957436_SNP [dm6]	A	G	9.386e^-5	0.938	INTRON AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	14483257	3L_14483257_SNP [dm3] 3L_14490157_SNP [dm6]	G	A	9.420e^-5	0.938	INTRON bbg
X	3325934	X_3325934_SNP [dm3] X_3431901_SNP [dm6]	A	T	9.454e^-5	0.938	INTRON CR44999 & 1 other
2R	13535984	2R_13535984_SNP [dm3] 2R_17648479_SNP [dm6]	A	T	9.565e^-5	0.938	INTRON CCHa1-R	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1070475	3L_1070475_SNP [dm3] 3L_1070475_SNP [dm6]	G	A	9.651e^-5	0.938	INTRON bab1	TF binding site BDTNP1_TFBS_twi
X	16869946	X_16869946_DEL [dm3] X_16975913_DEL [dm6]	ATTGTTAA	A	9.661e^-5	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	15628040	3L_15628040_SNP [dm3] 3L_15634940_SNP [dm6]	G	T	9.791e^-5	0.938	UPSTREAM comm3 INTRON comm3
3L	1140656	3L_1140656_SNP [dm3] 3L_1140656_SNP [dm6]	A	G	9.816e^-5	0.938	UTR_3_PRIME bab2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2555627	3R_2555627_SNP [dm3] 3R_6729905_SNP [dm6]	A	C	9.829e^-5	0.938	INTRON pb	regulatory region FlyBase REDfly_CRMs
2L	17054084	2L_17054084_SNP [dm3] 2L_17054084_SNP [dm6]	C	T	9.841e^-5	0.938	INTERGENIC
3L	16035603	3L_16035603_SNP [dm3] 3L_16042503_SNP [dm6]	A	C	9.884e^-5	0.938	UTR_5_PRIME th INTRON th	TF binding site BDTNP1_TFBS_dl
2R	17497097	2R_17497097_SNP [dm3] 2R_21609592_SNP [dm6]	G	A	9.958e^-5	0.938	INTRON CG15673
3R	10778421	3R_10778421_SNP [dm3] 3R_14952699_SNP [dm6]	A	G	1.000e^-4	0.938	INTERGENIC
3R	8027811	3R_8027811_SNP [dm3] 3R_12202089_SNP [dm6]	G	C	1.007e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10931106	3L_10931106_SNP [dm3] 3L_10938006_SNP [dm6]	G	C	1.014e^-4	0.938	INTERGENIC
3R	17891417	3R_17891417_SNP [dm3] 3R_22065695_SNP [dm6]	T	G	1.018e^-4	0.938	INTRON how
2R	17774032	2R_17774032_SNP [dm3] 2R_21886527_SNP [dm6]	A	C	1.022e^-4	0.938	INTRON Fili
X	2586734	X_2586734_SNP [dm3] X_2692701_SNP [dm6]	C	A	1.023e^-4	0.938	UTR_3_PRIME per DOWNSTREAM CG2650
X	16869918	X_16869918_DEL [dm3] X_16975885_DEL [dm6]	ATA	A	1.026e^-4	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	16869924	X_16869924_SNP [dm3] X_16975891_SNP [dm6]	T	G	1.026e^-4	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
X	16869928	X_16869928_DEL [dm3] X_16975895_DEL [dm6]	TCAAAC	A	1.026e^-4	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	6618061	2L_6618061_SNP [dm3] 2L_6618061_SNP [dm6]	A	G	1.026e^-4	0.938	SYNONYMOUS_CODING CG11320 DOWNSTREAM CG11050	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	13955479	X_13955479_SNP [dm3] X_14061446_SNP [dm6]	T	G	1.030e^-4	0.938	START_GAINED Ste:CG33236 UTR_5_PRIME Ste:CG33236
2L	17839335	2L_17839335_SNP [dm3] 2L_17839335_SNP [dm6]	T	A	1.036e^-4	0.938	INTRON CadN2
2L	17839652	2L_17839652_SNP [dm3] 2L_17839652_SNP [dm6]	C	G	1.037e^-4	0.938	INTRON CadN2
3L	15911187	3L_15911187_SNP [dm3] 3L_15918087_SNP [dm6]	A	C	1.038e^-4	0.938	INTRON sff
3L	12067439	3L_12067439_SNP [dm3] 3L_12074339_SNP [dm6]	C	A	1.046e^-4	0.938	INTRON Sema-5c
2L	14967406	2L_14967406_SNP [dm3] 2L_14967406_SNP [dm6]	T	G	1.046e^-4	0.938	INTRON CG42313
2L	14967407	2L_14967407_SNP [dm3] 2L_14967407_SNP [dm6]	C	T	1.046e^-4	0.938	INTRON CG42313
2R	7112224	2R_7112224_SNP [dm3] 2R_11224719_SNP [dm6]	C	T	1.048e^-4	0.938	SYNONYMOUS_CODING CG7737	TF binding site mE1_TFBS_cad
3R	25052910	3R_25052910_SNP [dm3] 3R_29227188_SNP [dm6]	T	G	1.077e^-4	0.938	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
3R	12736170	3R_12736170_SNP [dm3] 3R_16910448_SNP [dm6]	C	T	1.082e^-4	0.938	INTRON iab-8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6676295	2R_6676295_SNP [dm3] 2R_10788790_SNP [dm6]	C	T	1.082e^-4	0.938	INTRON CG33144
2L	9054473	2L_9054473_SNP [dm3] 2L_9054473_SNP [dm6]	A	T	1.082e^-4	0.938	INTRON CG31708
2L	10475746	2L_10475746_SNP [dm3] 2L_10475746_SNP [dm6]	C	A	1.093e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	17891382	3R_17891382_SNP [dm3] 3R_22065660_SNP [dm6]	T	C	1.094e^-4	0.938	INTRON how
2R	7106710	2R_7106710_SNP [dm3] 2R_11219205_SNP [dm6]	A	G	1.103e^-4	0.938	UTR_5_PRIME CG9084 UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	6832056	3L_6832056_SNP [dm3] 3L_6838956_SNP [dm6]	T	C	1.107e^-4	0.938	INTERGENIC
X	14956006	X_14956006_SNP [dm3] X_15061973_SNP [dm6]	A	C	1.117e^-4	0.938	INTRON hiw
2L	1665208	2L_1665208_SNP [dm3] 2L_1665208_SNP [dm6]	C	G	1.142e^-4	0.938	INTRON chinmo
2L	1024608	2L_1024608_SNP [dm3] 2L_1024608_SNP [dm6]	C	T	1.142e^-4	0.938	INTRON IA-2
X	13955475	X_13955475_SNP [dm3] X_14061442_SNP [dm6]	G	A	1.146e^-4	0.938	UTR_5_PRIME Ste:CG33236
3L	16030332	3L_16030332_SNP [dm3] 3L_16037232_SNP [dm6]	C	A	1.147e^-4	0.938	DOWNSTREAM CG5895 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
2L	10346933	2L_10346933_SNP [dm3] 2L_10346933_SNP [dm6]	T	C	1.152e^-4	0.938	SYNONYMOUS_CODING CG5022 DOWNSTREAM CG34367
2L	14969851	2L_14969851_SNP [dm3] 2L_14969851_SNP [dm6]	C	A	1.162e^-4	0.938	INTRON CG42313
3L	2966059	3L_2966059_SNP [dm3] 3L_2966059_SNP [dm6]	A	G	1.173e^-4	0.938	INTERGENIC
2L	9089733	2L_9089733_SNP [dm3] 2L_9089733_SNP [dm6]	A	C	1.179e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC
3R	9710879	3R_9710879_SNP [dm3] 3R_13885157_SNP [dm6]	G	A	1.182e^-4	0.938	INTERGENIC
X	14955973	X_14955973_SNP [dm3] X_15061940_SNP [dm6]	T	C	1.189e^-4	0.938	INTRON hiw
2L	19110835	2L_19110835_SNP [dm3] 2L_19110835_SNP [dm6]	C	T	1.202e^-4	0.938	DOWNSTREAM CR44905 INTRON amd
2L	15456407	2L_15456407_SNP [dm3] 2L_15456407_SNP [dm6]	T	G	1.203e^-4	0.938	INTERGENIC
2R	8149870	2R_8149870_SNP [dm3] 2R_12262365_SNP [dm6]	T	G	1.203e^-4	0.938	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	16836973	3R_16836973_SNP [dm3] 3R_21011251_SNP [dm6]	A	C	1.204e^-4	0.938	INTRON Calx
3R	10120898	3R_10120898_SNP [dm3] 3R_14295176_SNP [dm6]	A	G	1.211e^-4	0.938	INTRON CG12207
2R	13774688	2R_13774688_SNP [dm3] 2R_17887183_SNP [dm6]	C	T	1.226e^-4	0.938	DOWNSTREAM PPO1 INTRON Elk
3R	12755991	3R_12755991_SNP [dm3] 3R_16930269_SNP [dm6]	T	A	1.238e^-4	0.938	INTRON Abd-B
3L	12021041	3L_12021041_SNP [dm3] 3L_12027941_SNP [dm6]	C	A	1.250e^-4	0.938	INTRON rols EXON CR43994
X	16148458	X_16148458_SNP [dm3] X_16254425_SNP [dm6]	T	G	1.254e^-4	0.938	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11967809	3L_11967809_SNP [dm3] 3L_11974709_SNP [dm6]	A	G	1.254e^-4	0.938	UPSTREAM CG42397 & 1 other INTERGENIC
2R	19507518	2R_19507518_SNP [dm3] 2R_23619995_SNP [dm6]	T	A	1.254e^-4	0.938	INTERGENIC
2R	11930622	2R_11930622_SNP [dm3] 2R_16043117_SNP [dm6]	C	T	1.264e^-4	0.938	SYNONYMOUS_CODING SP2353
3L	16044634	3L_16044634_SNP [dm3] 3L_16051534_SNP [dm6]	A	C	1.264e^-4	0.938	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
2R	12847520	2R_12847520_SNP [dm3] 2R_16960015_SNP [dm6]	C	G	1.275e^-4	0.938	NON_SYNONYMOUS_CODING CG9010
X	16148441	X_16148441_SNP [dm3] X_16254408_SNP [dm6]	A	G	1.281e^-4	0.938	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9927254	2L_9927254_SNP [dm3] 2L_9927254_SNP [dm6]	C	A	1.285e^-4	0.938	SYNONYMOUS_CODING CG42366	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25153111	3R_25153111_SNP [dm3] 3R_29327389_SNP [dm6]	G	T	1.286e^-4	0.938	INTERGENIC
3R	27364177	3R_27364177_SNP [dm3] 3R_31538455_SNP [dm6]	T	C	1.292e^-4	0.938	INTERGENIC
3R	11282689	3R_11282689_SNP [dm3] 3R_15456967_SNP [dm6]	A	G	1.293e^-4	0.938	INTRON AdamTS-A
3R	18151461	3R_18151461_SNP [dm3] 3R_22325739_SNP [dm6]	A	G	1.303e^-4	0.938	INTERGENIC
2L	15456417	2L_15456417_SNP [dm3] 2L_15456417_SNP [dm6]	C	T	1.306e^-4	0.938	INTERGENIC
3R	24026782	3R_24026782_SNP [dm3] 3R_28201060_SNP [dm6]	G	A	1.311e^-4	0.938	INTRON CG34354
3R	25355113	3R_25355113_SNP [dm3] 3R_29529391_SNP [dm6]	C	A	1.312e^-4	0.938	INTERGENIC
2R	11930524	2R_11930524_SNP [dm3] 2R_16043019_SNP [dm6]	T	C	1.314e^-4	0.938	SYNONYMOUS_CODING SP2353
3L	13241658	3L_13241658_SNP [dm3] 3L_13248558_SNP [dm6]	T	C	1.316e^-4	0.938	SYNONYMOUS_CODING CG32119 UPSTREAM tRNA:D2:69F INTRON caps
2R	9692624	2R_9692624_SNP [dm3] 2R_13805119_SNP [dm6]	C	T	1.324e^-4	0.938	SYNONYMOUS_CODING Cpr50Cb UPSTREAM stj
2R	9845548	2R_9845548_SNP [dm3] 2R_13958043_SNP [dm6]	T	C	1.335e^-4	0.938	UTR_5_PRIME AGO1 DOWNSTREAM Rpn13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14483259	3L_14483259_SNP [dm3] 3L_14490159_SNP [dm6]	T	C	1.341e^-4	0.938	INTRON bbg
3R	20602189	3R_20602189_SNP [dm3] 3R_24776467_SNP [dm6]	C	G	1.363e^-4	0.938	INTRON CG42331	TF binding site mE1_TFBS_cad
2L	19145982	2L_19145982_SNP [dm3] 2L_19145982_SNP [dm6]	A	G	1.369e^-4	0.938	INTRON brat	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16033462	3L_16033462_SNP [dm3] 3L_16040362_SNP [dm6]	A	T	1.376e^-4	0.938	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	16033463	3L_16033463_SNP [dm3] 3L_16040363_SNP [dm6]	A	T	1.376e^-4	0.938	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	16033471	3L_16033471_SNP [dm3] 3L_16040371_SNP [dm6]	C	T	1.376e^-4	0.938	INTRON th	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
2R	9692805	2R_9692805_SNP [dm3] 2R_13805300_SNP [dm6]	C	G	1.378e^-4	0.938	UPSTREAM stj DOWNSTREAM Cpr50Cb INTERGENIC
2R	4560294	2R_4560294_SNP [dm3] 2R_8672789_SNP [dm6]	A	C	1.389e^-4	0.938	INTRON Acsl
3L	10306093	3L_10306093_SNP [dm3] 3L_10312993_SNP [dm6]	C	A	1.395e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7086317	2R_7086317_SNP [dm3] 2R_11198812_SNP [dm6]	G	A	1.423e^-4	0.938	UTR_5_PRIME shn INTRON shn	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	20229866	3R_20229866_SNP [dm3] 3R_24404144_SNP [dm6]	T	C	1.433e^-4	0.938	INTRON nAChRalpha1
2R	19508292	2R_19508292_SNP [dm3] 2R_23620769_SNP [dm6]	G	A	1.433e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	5811064	X_5811064_INS [dm3] X_5917031_INS [dm6]	A	AA	1.449e^-4	0.938	UPSTREAM CG3726 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	14473854	3L_14473854_SNP [dm3] 3L_14480754_SNP [dm6]	A	C	1.472e^-4	0.938	INTRON bbg
3L	16044643	3L_16044643_SNP [dm3] 3L_16051543_SNP [dm6]	A	C	1.489e^-4	0.938	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_sbb mE1_TFBS_Trl mE1_TFBS_zfh1
X	13956026	X_13956026_SNP [dm3] X_14061993_SNP [dm6]	G	A	1.503e^-4	0.938	UPSTREAM Ste:CG33236 INTERGENIC
3R	13066194	3R_13066194_INS [dm3] 3R_17240472_INS [dm6]	T	TT	1.504e^-4	0.938	INTRON beat-IIb
3L	9479741	3L_9479741_SNP [dm3] 3L_9486641_SNP [dm6]	C	T	1.507e^-4	0.938	SYNONYMOUS_CODING pall DOWNSTREAM Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	4072830	3L_4072830_SNP [dm3] 3L_4072830_SNP [dm6]	G	A	1.510e^-4	0.938	SYNONYMOUS_CODING Faa
2L	9051298	2L_9051298_SNP [dm3] 2L_9051298_SNP [dm6]	T	G	1.520e^-4	0.938	DOWNSTREAM CG31708 INTERGENIC
3R	20520866	3R_20520866_SNP [dm3] 3R_24695144_SNP [dm6]	G	T	1.525e^-4	0.938	INTRON slo
3R	18683069	3R_18683069_SNP [dm3] 3R_22857347_SNP [dm6]	T	A	1.536e^-4	0.938	INTERGENIC
X	17628606	X_17628606_SNP [dm3] X_17734573_SNP [dm6]	A	T	1.546e^-4	0.938	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
X	14955954	X_14955954_SNP [dm3] X_15061921_SNP [dm6]	T	C	1.554e^-4	0.938	INTRON hiw
2L	2807125	2L_2807125_SNP [dm3] 2L_2807125_SNP [dm6]	A	G	1.556e^-4	0.938	INTRON daw	TF binding site BDTNP1_TFBS_dl
3R	20015572	3R_20015572_SNP [dm3] 3R_24189850_SNP [dm6]	A	G	1.558e^-4	0.938	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
2R	15587549	2R_15587549_SNP [dm3] 2R_19700044_SNP [dm6]	A	T	1.560e^-4	0.938	UTR_3_PRIME Obp56c UPSTREAM Obp56b	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	10931133	3L_10931133_SNP [dm3] 3L_10938033_SNP [dm6]	G	T	1.561e^-4	0.938	INTERGENIC
3L	15968315	3L_15968315_SNP [dm3] 3L_15975215_SNP [dm6]	A	T	1.574e^-4	0.938	UPSTREAM CG17026 INTRON brm	TF binding site mE1_TFBS_HSA
3R	11478141	3R_11478141_SNP [dm3] 3R_15652419_SNP [dm6]	G	A	1.576e^-4	0.938	INTERGENIC
2L	17054075	2L_17054075_SNP [dm3] 2L_17054075_SNP [dm6]	A	G	1.579e^-4	0.938	INTERGENIC
2L	8660400	2L_8660400_DEL [dm3] 2L_8660400_DEL [dm6]	TT	T	1.580e^-4	0.938	INTRON Sema-1a
3L	7030861	3L_7030861_SNP [dm3] 3L_7037761_SNP [dm6]	C	T	1.581e^-4	0.938	INTRON Mp
3L	9054132	3L_9054132_SNP [dm3] 3L_9061032_SNP [dm6]	T	C	1.587e^-4	0.938	INTRON Argk
3L	16044453	3L_16044453_SNP [dm3] 3L_16051353_SNP [dm6]	G	A	1.591e^-4	0.938	UPSTREAM th & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8149736	2R_8149736_SNP [dm3] 2R_12262231_SNP [dm6]	T	C	1.594e^-4	0.938	INTRON Cam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z mE1_TFBS_Trl
2L	14723166	2L_14723166_SNP [dm3] 2L_14723166_SNP [dm6]	T	C	1.606e^-4	0.938	INTERGENIC
3L	13767030	3L_13767030_SNP [dm3] 3L_13773930_SNP [dm6]	T	A	1.608e^-4	0.938	INTRON bru-3
2L	14728136	2L_14728136_INS [dm3] 2L_14728136_INS [dm6]	A	AGAATATTTATATAAAATAT...	1.613e^-4	0.938	INTRON CG42685
3R	19202935	3R_19202935_SNP [dm3] 3R_23377213_SNP [dm6]	T	C	1.631e^-4	0.938	UTR_3_PRIME CG4393	TF binding site mE1_TFBS_inv
3L	5133144	3L_5133144_SNP [dm3] 3L_5140044_SNP [dm6]	A	T	1.642e^-4	0.938	SYNONYMOUS_CODING CHMP2B UPSTREAM Prpk DOWNSTREAM CG10672	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7106772	2R_7106772_SNP [dm3] 2R_11219267_SNP [dm6]	C	G	1.650e^-4	0.938	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	7106776	2R_7106776_SNP [dm3] 2R_11219271_SNP [dm6]	C	T	1.650e^-4	0.938	UPSTREAM Syx6 & 1 other INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	14154991	2R_14154991_SNP [dm3] 2R_18267486_SNP [dm6]	T	A	1.651e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	5304065	3R_5304065_SNP [dm3] 3R_9478343_SNP [dm6]	G	A	1.653e^-4	0.938	INTRON CG16779
3R	5304066	3R_5304066_SNP [dm3] 3R_9478344_SNP [dm6]	A	T	1.653e^-4	0.938	INTRON CG16779
3L	3882206	3L_3882206_SNP [dm3] 3L_3882206_SNP [dm6]	T	G	1.654e^-4	0.938	INTERGENIC
3L	3882242	3L_3882242_SNP [dm3] 3L_3882242_SNP [dm6]	C	G	1.654e^-4	0.938	INTERGENIC
3L	3882243	3L_3882243_SNP [dm3] 3L_3882243_SNP [dm6]	A	C	1.654e^-4	0.938	INTERGENIC
2R	7112173	2R_7112173_SNP [dm3] 2R_11224668_SNP [dm6]	C	T	1.661e^-4	0.938	SYNONYMOUS_CODING CG7737	TF binding site mE1_TFBS_cad
X	12959593	X_12959593_SNP [dm3] X_13065560_SNP [dm6]	C	T	1.664e^-4	0.938	INTRON rad
3R	17064834	3R_17064834_INS [dm3] 3R_21239112_INS [dm6]	C	GATCA	1.664e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs
2L	1871647	2L_1871647_SNP [dm3] 2L_1871647_SNP [dm6]	G	C	1.665e^-4	0.938	DOWNSTREAM CG7295 INTRON CG31663
3R	10634068	3R_10634068_SNP [dm3] 3R_14808346_SNP [dm6]	T	C	1.678e^-4	0.938	INTRON btsz	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	6675954	2R_6675954_SNP [dm3] 2R_10788449_SNP [dm6]	C	T	1.681e^-4	0.938	INTRON CG33144
3L	6455392	3L_6455392_SNP [dm3] 3L_6462292_SNP [dm6]	A	G	1.691e^-4	0.938	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14981352	2L_14981352_SNP [dm3] 2L_14981352_SNP [dm6]	T	C	1.692e^-4	0.938	INTRON mol
X	16872408	X_16872408_SNP [dm3] X_16978375_SNP [dm6]	G	C	1.692e^-4	0.938	INTRON CG45002
3R	25907180	3R_25907180_SNP [dm3] 3R_30081458_SNP [dm6]	G	A	1.693e^-4	0.938	INTRON sima
X	12959567	X_12959567_SNP [dm3] X_13065534_SNP [dm6]	A	T	1.697e^-4	0.938	INTRON rad
2R	17774122	2R_17774122_SNP [dm3] 2R_21886617_SNP [dm6]	A	G	1.701e^-4	0.938	INTRON Fili
3R	8662001	3R_8662001_SNP [dm3] 3R_12836279_SNP [dm6]	T	C	1.706e^-4	0.938	INTERGENIC
3R	8661905	3R_8661905_SNP [dm3] 3R_12836183_SNP [dm6]	C	T	1.712e^-4	0.938	INTERGENIC
2L	9089593	2L_9089593_SNP [dm3] 2L_9089593_SNP [dm6]	C	T	1.736e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC
3L	10960369	3L_10960369_SNP [dm3] 3L_10967269_SNP [dm6]	T	A	1.741e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	21703131	3L_21703131_SNP [dm3] 3L_21710031_SNP [dm6]	C	A	1.750e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9918516	2L_9918516_SNP [dm3] 2L_9918516_SNP [dm6]	G	T	1.754e^-4	0.938	UPSTREAM CG4598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	5339869	2R_5339869_SNP [dm3] 2R_9452364_SNP [dm6]	G	A	1.758e^-4	0.938	INTRON Camta
3L	22751598	3L_22751598_SNP [dm3] 3L_22758498_SNP [dm6]	C	A	1.758e^-4	0.938	INTRON SPoCk
3R	17064857	3R_17064857_SNP [dm3] 3R_21239135_SNP [dm6]	G	A	1.763e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs
3L	1114988	3L_1114988_SNP [dm3] 3L_1114988_SNP [dm6]	A	T	1.779e^-4	0.938	INTERGENIC
3R	24847183	3R_24847183_SNP [dm3] 3R_29021461_SNP [dm6]	A	T	1.781e^-4	0.938	EXON CR44264
3L	12990602	3L_12990602_DEL [dm3] 3L_12997502_DEL [dm6]	GTTGGAATTGT...	G	1.787e^-4	0.938	DOWNSTREAM CG11262 INTERGENIC
4	439640	4_439640_SNP [dm3] 4_419014_SNP [dm6]	G	A	1.797e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	25052827	3R_25052827_SNP [dm3] 3R_29227105_SNP [dm6]	C	A	1.818e^-4	0.938	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_chinmo
2R	13774704	2R_13774704_SNP [dm3] 2R_17887199_SNP [dm6]	G	A	1.821e^-4	0.938	DOWNSTREAM PPO1 INTRON Elk
3L	16041977	3L_16041977_SNP [dm3] 3L_16048877_SNP [dm6]	A	C	1.823e^-4	0.938	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19132388	2L_19132388_SNP [dm3] 2L_19132388_SNP [dm6]	A	G	1.824e^-4	0.938	UTR_5_PRIME l_2_37Ce UPSTREAM Aats-asn DOWNSTREAM l_2_37Cg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5527035	2R_5527035_SNP [dm3] 2R_9639530_SNP [dm6]	C	G	1.825e^-4	0.938	INTRON Mmp2
4	430988	4_430988_SNP [dm3] 4_410362_SNP [dm6]	G	A	1.829e^-4	0.938	INTERGENIC
2R	11930613	2R_11930613_SNP [dm3] 2R_16043108_SNP [dm6]	G	C	1.832e^-4	0.938	SYNONYMOUS_CODING SP2353
3L	7434230	3L_7434230_SNP [dm3] 3L_7441130_SNP [dm6]	C	T	1.837e^-4	0.938	UPSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26091243	3R_26091243_SNP [dm3] 3R_30265521_SNP [dm6]	G	C	1.839e^-4	0.938	INTERGENIC
3R	9711194	3R_9711194_SNP [dm3] 3R_13885472_SNP [dm6]	T	A	1.840e^-4	0.938	INTERGENIC
3R	9711210	3R_9711210_MNP [dm3] 3R_13885488_MNP [dm6]	AAA	CCG	1.840e^-4	0.938	INTERGENIC
3L	13228069	3L_13228069_SNP [dm3] 3L_13234969_SNP [dm6]	T	G	1.843e^-4	0.938	INTRON caps
X	1007605	X_1007605_SNP [dm3] X_1113572_SNP [dm6]	A	G	1.844e^-4	0.938	INTRON CG3655
3L	4208846	3L_4208846_SNP [dm3] 3L_4208846_SNP [dm6]	T	G	1.844e^-4	0.938	INTRON CG43367 & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11404367	2L_11404367_SNP [dm3] 2L_11404367_SNP [dm6]	T	G	1.855e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs
2R	12371445	2R_12371445_SNP [dm3] 2R_16483940_SNP [dm6]	G	T	1.865e^-4	0.938	DOWNSTREAM CG15712 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12211606	3L_12211606_SNP [dm3] 3L_12218506_SNP [dm6]	G	A	1.868e^-4	0.938	INTRON app
3R	12755972	3R_12755972_SNP [dm3] 3R_16930250_SNP [dm6]	A	T	1.868e^-4	0.938	INTRON Abd-B
3R	12755976	3R_12755976_SNP [dm3] 3R_16930254_SNP [dm6]	G	A	1.868e^-4	0.938	INTRON Abd-B
X	19224942	X_19224942_INS [dm3] X_19330909_INS [dm6]	A	AGTATATGCTATATATATAT...	1.877e^-4	0.938	INTRON nAChRalpha7
3R	27364292	3R_27364292_SNP [dm3] 3R_31538570_SNP [dm6]	T	A	1.887e^-4	0.938	INTERGENIC
2L	15844949	2L_15844949_SNP [dm3] 2L_15844949_SNP [dm6]	G	A	1.888e^-4	0.938	INTERGENIC
X	17628582	X_17628582_SNP [dm3] X_17734549_SNP [dm6]	A	G	1.897e^-4	0.938	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
X	12959594	X_12959594_SNP [dm3] X_13065561_SNP [dm6]	A	T	1.904e^-4	0.938	INTRON rad
2R	18816433	2R_18816433_SNP [dm3] 2R_22928910_SNP [dm6]	C	T	1.908e^-4	0.938	DOWNSTREAM CG42678 INTRON CG42678
3R	10778390	3R_10778390_SNP [dm3] 3R_14952668_SNP [dm6]	A	C	1.911e^-4	0.938	INTERGENIC
3L	18796529	3L_18796529_SNP [dm3] 3L_18803429_SNP [dm6]	G	A	1.913e^-4	0.938	SYNONYMOUS_CODING CG14073
4	424798	4_424798_SNP [dm3] 4_404172_SNP [dm6]	T	G	1.915e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5923107	3L_5923107_SNP [dm3] 3L_5930007_SNP [dm6]	T	C	1.924e^-4	0.938	UTR_3_PRIME Vap-33B DOWNSTREAM Rcc1 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9478027	3L_9478027_SNP [dm3] 3L_9484927_SNP [dm6]	T	C	1.924e^-4	0.938	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6689969	3L_6689969_SNP [dm3] 3L_6696869_SNP [dm6]	C	T	1.926e^-4	0.938	INTRON SP1173
3L	13647783	3L_13647783_SNP [dm3] 3L_13654683_SNP [dm6]	T	C	1.933e^-4	0.938	INTRON bru-3
2R	15425885	2R_15425885_SNP [dm3] 2R_19538380_SNP [dm6]	A	G	1.938e^-4	0.938	NON_SYNONYMOUS_CODING sm INTRON sm
2R	19682653	2R_19682653_SNP [dm3] 2R_23795130_SNP [dm6]	C	T	1.938e^-4	0.938	INTRON CG9850
3R	11478287	3R_11478287_SNP [dm3] 3R_15652565_SNP [dm6]	T	A	1.939e^-4	0.938	INTERGENIC
3L	9483099	3L_9483099_DEL [dm3] 3L_9489999_DEL [dm6]	AATGG	A	1.944e^-4	0.938	UTR_3_PRIME CG32037 UPSTREAM CG32036
3R	26623435	3R_26623435_SNP [dm3] 3R_30797713_SNP [dm6]	C	T	1.944e^-4	0.938	INTRON wts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19306905	3L_19306905_SNP [dm3] 3L_19313805_SNP [dm6]	T	C	1.954e^-4	0.938	INTRON pip
3R	26973340	3R_26973340_SNP [dm3] 3R_31147618_SNP [dm6]	T	A	1.962e^-4	0.938	INTRON Gycbeta100B
X	14617278	X_14617278_SNP [dm3] X_14723245_SNP [dm6]	G	C	1.966e^-4	0.938	INTRON NetB	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sbb
3L	1195187	3L_1195187_SNP [dm3] 3L_1195187_SNP [dm6]	A	G	1.967e^-4	0.938	NON_SYNONYMOUS_CODING LysX
3R	25944940	3R_25944940_SNP [dm3] 3R_30119218_SNP [dm6]	T	G	1.971e^-4	0.938	INTRON sima
3R	14853110	3R_14853110_SNP [dm3] 3R_19027388_SNP [dm6]	C	A	1.979e^-4	0.938	UTR_5_PRIME NP15.6 INTRON gatA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22677125	3R_22677125_SNP [dm3] 3R_26851403_SNP [dm6]	C	T	1.984e^-4	0.938	INTRON Lerp	TF binding site mE1_TFBS_inv
3L	11638743	3L_11638743_SNP [dm3] 3L_11645643_SNP [dm6]	A	G	1.991e^-4	0.938	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM RIOK1
2R	7103257	2R_7103257_SNP [dm3] 2R_11215752_SNP [dm6]	C	A	1.991e^-4	0.938	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	14387869	3L_14387869_SNP [dm3] 3L_14394769_SNP [dm6]	T	C	1.997e^-4	0.938	INTERGENIC
3L	22764624	3L_22764624_SNP [dm3] 3L_22771524_SNP [dm6]	A	C	2.005e^-4	0.938	INTRON SPoCk
X	5493776	X_5493776_SNP [dm3] X_5599743_SNP [dm6]	A	T	2.010e^-4	0.938	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
2L	16366176	2L_16366176_SNP [dm3] 2L_16366176_SNP [dm6]	C	T	2.018e^-4	0.938	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14387686	3L_14387686_DEL [dm3] 3L_14394586_DEL [dm6]	AA	A	2.025e^-4	0.938	INTERGENIC
3L	14387729	3L_14387729_SNP [dm3] 3L_14394629_SNP [dm6]	C	T	2.025e^-4	0.938	INTERGENIC
2R	11930628	2R_11930628_SNP [dm3] 2R_16043123_SNP [dm6]	A	C	2.044e^-4	0.938	SYNONYMOUS_CODING SP2353
2R	9450644	2R_9450644_SNP [dm3] 2R_13563139_SNP [dm6]	C	G	2.077e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	7106740	2R_7106740_SNP [dm3] 2R_11219235_SNP [dm6]	C	T	2.077e^-4	0.938	UTR_5_PRIME CG9084 UPSTREAM Syx6 INTRON CG9084	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	9477934	3L_9477934_SNP [dm3] 3L_9484834_SNP [dm6]	G	A	2.082e^-4	0.938	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9477964	3L_9477964_SNP [dm3] 3L_9484864_SNP [dm6]	A	G	2.082e^-4	0.938	SYNONYMOUS_CODING Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	12383509	3R_12383509_SNP [dm3] 3R_16557787_SNP [dm6]	A	T	2.084e^-4	0.938	INTRON CG42342
2L	16562624	2L_16562624_SNP [dm3] 2L_16562624_SNP [dm6]	T	C	2.104e^-4	0.938	INTRON CG42389
3L	6551974	3L_6551974_SNP [dm3] 3L_6558874_SNP [dm6]	T	C	2.105e^-4	0.938	INTRON CG18769
3L	3037920	3L_3037920_SNP [dm3] 3L_3037920_SNP [dm6]	C	T	2.106e^-4	0.938	SYNONYMOUS_CODING CG2162 UPSTREAM CG2162	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2R	2037190	2R_2037190_SNP [dm3] 2R_6149685_SNP [dm6]	C	T	2.109e^-4	0.938	INTRON EcR
3R	15077651	3R_15077651_SNP [dm3] 3R_19251929_SNP [dm6]	A	G	2.121e^-4	0.938	INTERGENIC
X	18912330	X_18912330_SNP [dm3] X_19018297_SNP [dm6]	T	C	2.121e^-4	0.938	INTRON CG43759
3R	11618479	3R_11618479_SNP [dm3] 3R_15792757_SNP [dm6]	G	C	2.123e^-4	0.938	UTR_5_PRIME Acyp2 UPSTREAM c_3_G	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_Ubx
3R	20133026	3R_20133026_SNP [dm3] 3R_24307304_SNP [dm6]	T	A	2.131e^-4	0.938	INTRON crb	TF binding site mE1_TFBS_cad
3L	12021040	3L_12021040_SNP [dm3] 3L_12027940_SNP [dm6]	T	C	2.134e^-4	0.938	INTRON rols EXON CR43994
3R	5601565	3R_5601565_SNP [dm3] 3R_9775843_SNP [dm6]	G	A	2.136e^-4	0.938	SYNONYMOUS_CODING topi	TF binding site mE1_TFBS_chinmo
3R	12297397	3R_12297397_SNP [dm3] 3R_16471675_SNP [dm6]	G	C	2.139e^-4	0.938	UPSTREAM Gyc-89Da DOWNSTREAM CSN5 INTERGENIC
2L	14728275	2L_14728275_SNP [dm3] 2L_14728275_SNP [dm6]	A	T	2.158e^-4	0.938	NON_SYNONYMOUS_CODING CG42685
2R	17774140	2R_17774140_SNP [dm3] 2R_21886635_SNP [dm6]	T	A	2.160e^-4	0.938	INTRON Fili
2L	19111035	2L_19111035_SNP [dm3] 2L_19111035_SNP [dm6]	C	T	2.161e^-4	0.938	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	9541027	3L_9541027_SNP [dm3] 3L_9547927_SNP [dm6]	C	T	2.163e^-4	0.938	INTRON CG42673	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	1039615	2L_1039615_SNP [dm3] 2L_1039615_SNP [dm6]	G	T	2.195e^-4	0.938	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	15544789	X_15544789_SNP [dm3] X_15650756_SNP [dm6]	C	A	2.197e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18997848	3L_18997848_DEL [dm3] 3L_19004748_DEL [dm6]	AAA	C	2.200e^-4	0.938	UTR_3_PRIME nkd
3L	12021061	3L_12021061_SNP [dm3] 3L_12027961_SNP [dm6]	T	C	2.216e^-4	0.938	INTRON rols EXON CR43994
3L	18601936	3L_18601936_SNP [dm3] 3L_18608836_SNP [dm6]	T	A	2.216e^-4	0.938	NON_SYNONYMOUS_CODING CG18231 UPSTREAM CG32201 INTRON CG4174 & 1 other
3L	2721819	3L_2721819_SNP [dm3] 3L_2721819_SNP [dm6]	C	A	2.216e^-4	0.938	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1578677	3L_1578677_SNP [dm3] 3L_1578677_SNP [dm6]	G	A	2.236e^-4	0.938	INTRON CG13917	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_jumu
2L	20419214	2L_20419214_SNP [dm3] 2L_20419214_SNP [dm6]	T	A	2.244e^-4	0.938	UPSTREAM snoRNA:Psi18S-640c & 4 others DOWNSTREAM snoRNA:Psi18S-525a & 4 others INTRON Arpc2 EXON snoRNA:Psi18S-525d
3R	15077692	3R_15077692_SNP [dm3] 3R_19251970_SNP [dm6]	A	T	2.245e^-4	0.938	INTERGENIC
3R	15077680	3R_15077680_SNP [dm3] 3R_19251958_SNP [dm6]	T	G	2.246e^-4	0.938	INTERGENIC
3R	15077684	3R_15077684_DEL [dm3] 3R_19251962_DEL [dm6]	GCTAA	G	2.246e^-4	0.938	INTERGENIC
3L	2571076	3L_2571076_DEL [dm3] 3L_2571076_DEL [dm6]	AC	A	2.247e^-4	0.938	INTRON msn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16869914	X_16869914_SNP [dm3] X_16975881_SNP [dm6]	G	A	2.263e^-4	0.938	INTRON CG45002	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	17383255	2L_17383255_SNP [dm3] 2L_17383255_SNP [dm6]	C	T	2.271e^-4	0.938	INTRON Lrch	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
2L	13881514	2L_13881514_SNP [dm3] 2L_13881514_SNP [dm6]	T	C	2.277e^-4	0.938	INTRON CenG1A
2L	19111572	2L_19111572_SNP [dm3] 2L_19111572_SNP [dm6]	T	A	2.281e^-4	0.938	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	18480496	3R_18480496_SNP [dm3] 3R_22654774_SNP [dm6]	A	T	2.292e^-4	0.938	INTRON CG45058
2R	13774631	2R_13774631_SNP [dm3] 2R_17887126_SNP [dm6]	T	A	2.310e^-4	0.938	DOWNSTREAM PPO1 INTRON Elk	regulatory region REDfly_CRMs
2L	882783	2L_882783_SNP [dm3] 2L_882783_SNP [dm6]	A	T	2.311e^-4	0.938	NON_SYNONYMOUS_CODING CG15824	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	14014233	3L_14014233_SNP [dm3] 3L_14021133_SNP [dm6]	T	C	2.312e^-4	0.938	UTR_3_PRIME ptip DOWNSTREAM upSET
X	16872533	X_16872533_DEL [dm3] X_16978500_DEL [dm6]	TTTCATATAGC...	T	2.317e^-4	0.938	INTRON CG45002
2R	17774128	2R_17774128_SNP [dm3] 2R_21886623_SNP [dm6]	C	A	2.329e^-4	0.938	INTRON Fili
2R	11519413	2R_11519413_SNP [dm3] 2R_15631908_SNP [dm6]	A	C	2.330e^-4	0.938	INTRON CG42524
2R	16547238	2R_16547238_SNP [dm3] 2R_20659733_SNP [dm6]	A	G	2.336e^-4	0.938	INTRON Lrt
2L	7357681	2L_7357681_SNP [dm3] 2L_7357681_SNP [dm6]	C	A	2.344e^-4	0.938	INTERGENIC
X	19322265	X_19322265_DEL [dm3] X_19428232_DEL [dm6]	TT	T	2.346e^-4	0.938	INTRON kek5
2R	11607565	2R_11607565_SNP [dm3] 2R_15720060_SNP [dm6]	G	A	2.349e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9699482	2L_9699482_SNP [dm3] 2L_9699482_SNP [dm6]	T	G	2.350e^-4	0.938	UPSTREAM hoip & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2683098	2R_2683098_SNP [dm3] 2R_6795593_SNP [dm6]	A	G	2.356e^-4	0.938	INTRON Epac
2R	2683100	2R_2683100_SNP [dm3] 2R_6795595_SNP [dm6]	C	T	2.356e^-4	0.938	INTRON Epac
2L	15782504	2L_15782504_SNP [dm3] 2L_15782504_SNP [dm6]	A	C	2.356e^-4	0.938	INTERGENIC
3R	20559776	3R_20559776_SNP [dm3] 3R_24734054_SNP [dm6]	G	C	2.360e^-4	0.938	INTRON tok
3L	14387851	3L_14387851_SNP [dm3] 3L_14394751_SNP [dm6]	C	G	2.363e^-4	0.938	INTERGENIC
3R	12624495	3R_12624495_SNP [dm3] 3R_16798773_SNP [dm6]	A	T	2.364e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_zfh1
X	3792462	X_3792462_SNP [dm3] X_3898429_SNP [dm6]	C	G	2.375e^-4	0.938	INTRON CG42541
3L	7144064	3L_7144064_SNP [dm3] 3L_7150964_SNP [dm6]	A	C	2.397e^-4	0.938	INTRON corn	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3490927	2L_3490927_SNP [dm3] 2L_3490927_SNP [dm6]	C	A	2.404e^-4	0.938	UTR_5_PRIME CG15414
3L	20789813	3L_20789813_SNP [dm3] 3L_20796713_SNP [dm6]	C	G	2.405e^-4	0.938	UPSTREAM CR43706 DOWNSTREAM CG3698 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	9089522	2L_9089522_SNP [dm3] 2L_9089522_SNP [dm6]	C	T	2.422e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC
2R	17332197	2R_17332197_SNP [dm3] 2R_21444692_SNP [dm6]	G	A	2.430e^-4	0.938	INTRON Sdc
X	5493761	X_5493761_INS [dm3] X_5599728_INS [dm6]	T	TTATTCGAGTGAAT...	2.439e^-4	0.938	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
2L	14728312	2L_14728312_SNP [dm3] 2L_14728312_SNP [dm6]	T	C	2.441e^-4	0.938	NON_SYNONYMOUS_CODING CG42685
2L	14715878	2L_14715878_SNP [dm3] 2L_14715878_SNP [dm6]	G	A	2.446e^-4	0.938	INTERGENIC
2L	14056317	2L_14056317_SNP [dm3] 2L_14056317_SNP [dm6]	A	G	2.449e^-4	0.938	INTRON nAChRalpha5
X	19224845	X_19224845_SNP [dm3] X_19330812_SNP [dm6]	T	C	2.453e^-4	0.938	INTRON nAChRalpha7	transposable element FlyBase
3L	21669170	3L_21669170_SNP [dm3] 3L_21676070_SNP [dm6]	G	C	2.454e^-4	0.938	NON_SYNONYMOUS_CODING CG7158	TF binding site mE1_TFBS_cad
2L	5580782	2L_5580782_SNP [dm3] 2L_5580782_SNP [dm6]	C	T	2.455e^-4	0.938	NON_SYNONYMOUS_CODING CG14011	TF binding site mE1_TFBS_HSA
2L	2380716	2L_2380716_SNP [dm3] 2L_2380716_SNP [dm6]	C	A	2.456e^-4	0.938	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2123313	3L_2123313_SNP [dm3] 3L_2123313_SNP [dm6]	C	T	2.465e^-4	0.938	SYNONYMOUS_CODING zormin INTRON zormin
3L	7489072	3L_7489072_SNP [dm3] 3L_7495972_SNP [dm6]	C	G	2.471e^-4	0.938	INTRON Cyp4d8
3L	5023306	3L_5023306_DEL [dm3] 3L_5023306_DEL [dm6]	TTCAAA	T	2.474e^-4	0.938	INTRON Con
X	16582448	X_16582448_SNP [dm3] X_16688415_SNP [dm6]	A	C	2.483e^-4	0.938	UPSTREAM Sep4 INTRON Sep4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9093372	2L_9093372_SNP [dm3] 2L_9093372_SNP [dm6]	C	T	2.490e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	2703633	2L_2703633_SNP [dm3] 2L_2703633_SNP [dm6]	A	G	2.492e^-4	0.938	INTRON CG31690
2R	11607550	2R_11607550_SNP [dm3] 2R_15720045_SNP [dm6]	T	A	2.500e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
X	19995393	X_19995393_SNP [dm3] X_20101360_SNP [dm6]	C	A	2.501e^-4	0.938	INTERGENIC	transposable element FlyBase
2L	893227	2L_893227_SNP [dm3] 2L_893227_SNP [dm6]	C	A	2.508e^-4	0.938	INTERGENIC
3L	1070516	3L_1070516_SNP [dm3] 3L_1070516_SNP [dm6]	G	A	2.511e^-4	0.938	INTRON bab1	TF binding site BDTNP1_TFBS_twi
2L	19113474	2L_19113474_SNP [dm3] 2L_19113474_SNP [dm6]	C	T	2.519e^-4	0.938	SYNONYMOUS_CODING amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	13369925	2R_13369925_SNP [dm3] 2R_17482420_SNP [dm6]	C	T	2.521e^-4	0.938	NON_SYNONYMOUS_CODING CG43110 DOWNSTREAM veil
3L	4108114	3L_4108114_SNP [dm3] 3L_4108114_SNP [dm6]	T	G	2.528e^-4	0.938	UPSTREAM Ack & 1 other DOWNSTREAM Fit1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7171502	3L_7171502_SNP [dm3] 3L_7178402_SNP [dm6]	G	A	2.528e^-4	0.938	INTRON Dscam2
3L	7518172	3L_7518172_SNP [dm3] 3L_7525072_SNP [dm6]	C	A	2.538e^-4	0.938	SYNONYMOUS_CODING ltl	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14516410	X_14516410_SNP [dm3] X_14622377_SNP [dm6]	T	G	2.539e^-4	0.938	INTRON NetA
3L	7434865	3L_7434865_SNP [dm3] 3L_7441765_SNP [dm6]	C	A	2.539e^-4	0.938	INTRON CG42458
3R	20230033	3R_20230033_SNP [dm3] 3R_24404311_SNP [dm6]	C	G	2.541e^-4	0.938	INTRON nAChRalpha1
2L	17102521	2L_17102521_SNP [dm3] 2L_17102521_SNP [dm6]	G	A	2.546e^-4	0.938	INTERGENIC
2L	18478949	2L_18478949_SNP [dm3] 2L_18478949_SNP [dm6]	T	A	2.547e^-4	0.938	INTRON CG10283
X	14516521	X_14516521_SNP [dm3] X_14622488_SNP [dm6]	G	C	2.576e^-4	0.938	INTRON NetA
3R	19902416	3R_19902416_INS [dm3] 3R_24076694_INS [dm6]	A	ACACA	2.582e^-4	0.938	INTRON 4EHP	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	6125629	2L_6125629_SNP [dm3] 2L_6125629_SNP [dm6]	T	C	2.583e^-4	0.938	SYNONYMOUS_CODING Arpc4 DOWNSTREAM stai & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	9746376	X_9746376_SNP [dm3] X_9852343_SNP [dm6]	T	A	2.584e^-4	0.938	UTR_3_PRIME CG32698
2R	15587191	2R_15587191_DEL [dm3] 2R_19699686_DEL [dm6]	CATACAGCTGCATATA...	C	2.587e^-4	0.938	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
3L	18388653	3L_18388653_SNP [dm3] 3L_18395553_SNP [dm6]	G	A	2.594e^-4	0.938	INTERGENIC
3L	6308536	3L_6308536_SNP [dm3] 3L_6315436_SNP [dm6]	A	G	2.595e^-4	0.938	INTERGENIC	transposable element FlyBase
2L	19110827	2L_19110827_SNP [dm3] 2L_19110827_SNP [dm6]	T	C	2.627e^-4	0.938	DOWNSTREAM CR44905 INTRON amd
3L	16046160	3L_16046160_SNP [dm3] 3L_16053060_SNP [dm6]	C	T	2.629e^-4	0.938	START_GAINED Mbs UTR_5_PRIME Mbs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	26082873	3R_26082873_SNP [dm3] 3R_30257151_SNP [dm6]	G	C	2.631e^-4	0.938	INTERGENIC
3L	4520203	3L_4520203_SNP [dm3] 3L_4520203_SNP [dm6]	A	G	2.642e^-4	0.938	INTRON Tie
3L	13782768	3L_13782768_SNP [dm3] 3L_13789668_SNP [dm6]	C	A	2.646e^-4	0.938	INTRON bru-3
3R	13070297	3R_13070297_SNP [dm3] 3R_17244575_SNP [dm6]	T	A	2.652e^-4	0.938	INTRON beat-IIb
2L	18982071	2L_18982071_SNP [dm3] 2L_18982071_SNP [dm6]	G	A	2.652e^-4	0.938	INTRON Swip-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7826835	3L_7826835_SNP [dm3] 3L_7833735_SNP [dm6]	A	G	2.658e^-4	0.938	UPSTREAM Pdp1 INTRON Pdp1	TF binding site mE1_TFBS_Trl
3R	13803388	3R_13803388_SNP [dm3] 3R_17977666_SNP [dm6]	A	T	2.658e^-4	0.938	INTRON cpo
3L	8260936	3L_8260936_INS [dm3] 3L_8267836_INS [dm6]	C	CC	2.660e^-4	0.938	INTRON Dscam4
X	18911965	X_18911965_SNP [dm3] X_19017932_SNP [dm6]	G	A	2.672e^-4	0.938	INTRON CG43759
2L	5442136	2L_5442136_SNP [dm3] 2L_5442136_SNP [dm6]	G	A	2.687e^-4	0.938	INTERGENIC
3R	8662023	3R_8662023_SNP [dm3] 3R_12836301_SNP [dm6]	A	T	2.700e^-4	0.938	INTERGENIC
2L	3490912	2L_3490912_SNP [dm3] 2L_3490912_SNP [dm6]	T	A	2.703e^-4	0.938	UTR_5_PRIME CG15414
3R	11619418	3R_11619418_SNP [dm3] 3R_15793696_SNP [dm6]	C	T	2.703e^-4	0.938	UPSTREAM nsl1 DOWNSTREAM Acyp2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	3498019	3R_3498019_DEL [dm3] 3R_7672297_DEL [dm6]	AA	A	2.724e^-4	0.938	INTRON Nlg1
2R	6660371	2R_6660371_SNP [dm3] 2R_10772866_SNP [dm6]	T	A	2.729e^-4	0.938	INTRON CG33144
3L	5536947	3L_5536947_SNP [dm3] 3L_5543847_SNP [dm6]	A	G	2.730e^-4	0.938	SYNONYMOUS_CODING CG10625 DOWNSTREAM CG10625 INTRON CG10625
2R	5914006	2R_5914006_SNP [dm3] 2R_10026501_SNP [dm6]	A	G	2.735e^-4	0.938	UPSTREAM CG12128 & 1 other EXON CR44294	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	16019355	2L_16019355_SNP [dm3] 2L_16019355_SNP [dm6]	G	A	2.736e^-4	0.938	INTRON beat-Ic
2L	10885578	2L_10885578_SNP [dm3] 2L_10885578_SNP [dm6]	G	A	2.738e^-4	0.938	UPSTREAM CR44490 INTERGENIC
2L	1024487	2L_1024487_SNP [dm3] 2L_1024487_SNP [dm6]	A	G	2.748e^-4	0.938	INTRON IA-2	insulator Insulator_Class_II.mE01
3R	14124855	3R_14124855_SNP [dm3] 3R_18299133_SNP [dm6]	T	C	2.750e^-4	0.938	UPSTREAM Dlc90F & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	14531650	2R_14531650_SNP [dm3] 2R_18644145_SNP [dm6]	T	A	2.767e^-4	0.938	INTRON SP2637
2R	14531665	2R_14531665_SNP [dm3] 2R_18644160_SNP [dm6]	G	A	2.767e^-4	0.938	INTRON SP2637
X	12493516	X_12493516_SNP [dm3] X_12599483_SNP [dm6]	C	T	2.777e^-4	0.938	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo
3L	1711471	3L_1711471_SNP [dm3] 3L_1711471_SNP [dm6]	A	G	2.783e^-4	0.938	INTRON CG7991
3L	3312838	3L_3312838_SNP [dm3] 3L_3312838_SNP [dm6]	C	T	2.795e^-4	0.938	SYNONYMOUS_CODING ZnT63C	TF binding site mE1_TFBS_cad
3L	2123337	3L_2123337_SNP [dm3] 3L_2123337_SNP [dm6]	G	A	2.798e^-4	0.938	SYNONYMOUS_CODING zormin INTRON zormin
3R	12756639	3R_12756639_SNP [dm3] 3R_16930917_SNP [dm6]	A	G	2.803e^-4	0.938	INTRON Abd-B
3R	26659999	3R_26659999_SNP [dm3] 3R_30834277_SNP [dm6]	T	A	2.808e^-4	0.938	INTRON CG15544
2L	13675265	2L_13675265_SNP [dm3] 2L_13675265_SNP [dm6]	T	A	2.814e^-4	0.938	INTERGENIC
2L	19111318	2L_19111318_SNP [dm3] 2L_19111318_SNP [dm6]	G	A	2.835e^-4	0.938	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3R	27364444	3R_27364444_SNP [dm3] 3R_31538722_SNP [dm6]	G	A	2.836e^-4	0.938	INTERGENIC
3L	4854006	3L_4854006_SNP [dm3] 3L_4854006_SNP [dm6]	G	T	2.838e^-4	0.938	INTERGENIC
3R	14092405	3R_14092405_SNP [dm3] 3R_18266683_SNP [dm6]	T	A	2.852e^-4	0.938	INTERGENIC
2R	7586454	2R_7586454_DEL [dm3] 2R_11698949_DEL [dm6]	AA	A	2.857e^-4	0.938	DOWNSTREAM Ir48a INTERGENIC
2R	1753765	2R_1753765_SNP [dm3] 2R_5866260_SNP [dm6]	T	C	2.858e^-4	0.938	INTERGENIC
2L	14728311	2L_14728311_SNP [dm3] 2L_14728311_SNP [dm6]	T	G	2.866e^-4	0.938	NON_SYNONYMOUS_CODING CG42685
2L	2121868	2L_2121868_SNP [dm3] 2L_2121868_SNP [dm6]	A	G	2.869e^-4	0.938	INTERGENIC
2L	3490914	2L_3490914_SNP [dm3] 2L_3490914_SNP [dm6]	T	A	2.871e^-4	0.938	UTR_5_PRIME CG15414
3R	19805816	3R_19805816_SNP [dm3] 3R_23980094_SNP [dm6]	G	T	2.876e^-4	0.938	INTRON CG31140
3R	24048636	3R_24048636_SNP [dm3] 3R_28222914_SNP [dm6]	A	G	2.879e^-4	0.938	INTRON CG34354
2L	14730892	2L_14730892_SNP [dm3] 2L_14730892_SNP [dm6]	G	A	2.882e^-4	0.938	UPSTREAM CG42685 INTERGENIC
3L	6600183	3L_6600183_SNP [dm3] 3L_6607083_SNP [dm6]	G	A	2.891e^-4	0.938	SPLICE_SITE_REGION CG8368 INTRON CG8368	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16257778	3L_16257778_SNP [dm3] 3L_16264678_SNP [dm6]	G	A	2.893e^-4	0.938	UPSTREAM CG13069 DOWNSTREAM CG13051 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	8802505	3L_8802505_SNP [dm3] 3L_8809405_SNP [dm6]	C	G	2.895e^-4	0.938	UPSTREAM CG13309 DOWNSTREAM CG32024 & 1 other INTERGENIC
2L	18274368	2L_18274368_SNP [dm3] 2L_18274368_SNP [dm6]	A	G	2.900e^-4	0.938	INTRON CG42750
3R	22917959	3R_22917959_SNP [dm3] 3R_27092237_SNP [dm6]	C	A	2.907e^-4	0.938	UPSTREAM CG14258 INTERGENIC
3R	23295147	3R_23295147_SNP [dm3] 3R_27469425_SNP [dm6]	C	A	2.912e^-4	0.938	INTERGENIC
2R	17993842	2R_17993842_SNP [dm3] 2R_22106337_SNP [dm6]	C	T	2.917e^-4	0.938	UTR_3_PRIME Vrp1 DOWNSTREAM CG6613
3R	20015516	3R_20015516_SNP [dm3] 3R_24189794_SNP [dm6]	G	A	2.923e^-4	0.938	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
3L	7488999	3L_7488999_SNP [dm3] 3L_7495899_SNP [dm6]	A	G	2.923e^-4	0.938	INTRON Cyp4d8
X	7802916	X_7802916_DEL [dm3] X_7908883_DEL [dm6]	AC	A	2.925e^-4	0.938	UPSTREAM CG1444 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13552308	2L_13552308_DEL [dm3] 2L_13552308_DEL [dm6]	TT	T	2.932e^-4	0.938	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	2229303	3L_2229303_INS [dm3] 3L_2229303_INS [dm6]	C	CTA	2.933e^-4	0.938	UPSTREAM Oseg2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5917838	2R_5917838_INS [dm3] 2R_10030333_INS [dm6]	T	TGTT	2.936e^-4	0.938	UTR_3_PRIME CG12128 INTRON CG1407
3R	13611149	3R_13611149_SNP [dm3] 3R_17785427_SNP [dm6]	G	A	2.937e^-4	0.938	INTRON CG43102
3R	10313548	3R_10313548_SNP [dm3] 3R_14487826_SNP [dm6]	T	G	2.939e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
X	6448837	X_6448837_SNP [dm3] X_6554804_SNP [dm6]	G	A	2.968e^-4	0.938	UTR_3_PRIME CG34417 INTRON CG34417
3L	6298239	3L_6298239_SNP [dm3] 3L_6305139_SNP [dm6]	T	A	2.974e^-4	0.938	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3L	13228526	3L_13228526_SNP [dm3] 3L_13235426_SNP [dm6]	G	A	2.976e^-4	0.938	INTRON caps
3R	25153173	3R_25153173_SNP [dm3] 3R_29327451_SNP [dm6]	C	G	2.980e^-4	0.938	INTERGENIC
3L	13228562	3L_13228562_SNP [dm3] 3L_13235462_SNP [dm6]	C	T	2.989e^-4	0.938	INTRON caps
3L	11926826	3L_11926826_SNP [dm3] 3L_11933726_SNP [dm6]	C	T	3.008e^-4	0.938	INTRON CG44837 & 1 other
3L	11664177	3L_11664177_DEL [dm3] 3L_11671077_DEL [dm6]	TT	T	3.017e^-4	0.938	INTRON CG32085
3R	20015581	3R_20015581_SNP [dm3] 3R_24189859_SNP [dm6]	G	A	3.025e^-4	0.938	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
3R	7738660	3R_7738660_DEL [dm3] 3R_11912938_DEL [dm6]	TTTTTGTGTATT...	T	3.031e^-4	0.938	INTRON Cad87A
2L	9715478	2L_9715478_SNP [dm3] 2L_9715478_SNP [dm6]	A	T	3.042e^-4	0.938	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl
X	16289340	X_16289340_SNP [dm3] X_16395307_SNP [dm6]	A	T	3.048e^-4	0.938	SYNONYMOUS_CODING mei-41	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	3330668	3R_3330668_SNP [dm3] 3R_7504946_SNP [dm6]	A	G	3.048e^-4	0.938	UTR_5_PRIME alpha-Est9
X	14516384	X_14516384_SNP [dm3] X_14622351_SNP [dm6]	T	A	3.065e^-4	0.938	INTRON NetA
X	19420312	X_19420312_SNP [dm3] X_19526279_SNP [dm6]	C	T	3.071e^-4	0.938	DOWNSTREAM CoRest INTRON CoRest
2L	6166726	2L_6166726_SNP [dm3] 2L_6166726_SNP [dm6]	G	A	3.072e^-4	0.938	INTERGENIC
X	19995519	X_19995519_SNP [dm3] X_20101486_SNP [dm6]	T	G	3.081e^-4	0.938	INTERGENIC	transposable element FlyBase
2L	20535768	2L_20535768_SNP [dm3] 2L_20535768_SNP [dm6]	A	C	3.083e^-4	0.938	INTERGENIC
3R	26973256	3R_26973256_SNP [dm3] 3R_31147534_SNP [dm6]	T	C	3.085e^-4	0.938	INTRON Gycbeta100B
2L	6805227	2L_6805227_SNP [dm3] 2L_6805227_SNP [dm6]	G	A	3.097e^-4	0.938	DOWNSTREAM CG11236 INTRON CG17375	TF binding site mE1_TFBS_cad
3L	13793430	3L_13793430_SNP [dm3] 3L_13800330_SNP [dm6]	T	C	3.115e^-4	0.938	INTRON bru-3
2L	18478942	2L_18478942_SNP [dm3] 2L_18478942_SNP [dm6]	T	A	3.155e^-4	0.938	INTRON CG10283
2L	18478945	2L_18478945_SNP [dm3] 2L_18478945_SNP [dm6]	C	T	3.155e^-4	0.938	INTRON CG10283
3L	2088643	3L_2088643_SNP [dm3] 3L_2088643_SNP [dm6]	C	T	3.178e^-4	0.938	UTR_3_PRIME sls INTRON sls & 1 other EXON CR42860	TF binding site mE1_TFBS_HSA
X	9746346	X_9746346_SNP [dm3] X_9852313_SNP [dm6]	G	C	3.181e^-4	0.938	UTR_3_PRIME CG32698
2R	5908118	2R_5908118_SNP [dm3] 2R_10020613_SNP [dm6]	A	G	3.188e^-4	0.938	INTRON Pka-R2
2R	5908646	2R_5908646_SNP [dm3] 2R_10021141_SNP [dm6]	A	G	3.188e^-4	0.938	INTRON Pka-R2
2R	5909751	2R_5909751_SNP [dm3] 2R_10022246_SNP [dm6]	T	C	3.188e^-4	0.938	INTRON Pka-R2
2L	18427312	2L_18427312_SNP [dm3] 2L_18427312_SNP [dm6]	G	A	3.203e^-4	0.938	INTERGENIC
X	6639441	X_6639441_SNP [dm3] X_6745408_SNP [dm6]	T	A	3.211e^-4	0.938	UPSTREAM tRNA:CR32740 DOWNSTREAM CR44964 EXON CR44895
3R	25160520	3R_25160520_SNP [dm3] 3R_29334798_SNP [dm6]	G	A	3.213e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	3792465	X_3792465_SNP [dm3] X_3898432_SNP [dm6]	T	C	3.225e^-4	0.938	INTRON CG42541
3R	12758043	3R_12758043_SNP [dm3] 3R_16932321_SNP [dm6]	A	G	3.242e^-4	0.938	UPSTREAM Abd-B INTRON Abd-B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4659905	3L_4659905_SNP [dm3] 3L_4659905_SNP [dm6]	T	C	3.243e^-4	0.938	SYNONYMOUS_CODING axo
3R	24857553	3R_24857553_SNP [dm3] 3R_29031831_SNP [dm6]	A	C	3.245e^-4	0.938	NON_SYNONYMOUS_CODING Ssl2 DOWNSTREAM CG1951 & 1 other EXON CR45044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	17234072	2L_17234072_SNP [dm3] 2L_17234072_SNP [dm6]	T	C	3.257e^-4	0.938	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	8488807	3L_8488807_SNP [dm3] 3L_8495707_SNP [dm6]	G	A	3.262e^-4	0.938	INTRON CG43163
3L	6494050	3L_6494050_SNP [dm3] 3L_6500950_SNP [dm6]	T	C	3.269e^-4	0.938	INTRON sfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
2R	5916572	2R_5916572_SNP [dm3] 2R_10029067_SNP [dm6]	A	G	3.279e^-4	0.938	UTR_3_PRIME CG12128 DOWNSTREAM CG1407 & 1 other INTRON CG1407
2R	5920331	2R_5920331_SNP [dm3] 2R_10032826_SNP [dm6]	T	C	3.279e^-4	0.938	UTR_5_PRIME CG1407 UPSTREAM CG12129	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	5920531	2R_5920531_SNP [dm3] 2R_10033026_SNP [dm6]	T	C	3.279e^-4	0.938	UPSTREAM CG12129 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	5920550	2R_5920550_SNP [dm3] 2R_10033045_SNP [dm6]	C	G	3.279e^-4	0.938	UPSTREAM CG12129 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	11018170	2L_11018170_SNP [dm3] 2L_11018170_SNP [dm6]	C	A	3.284e^-4	0.938	SYNONYMOUS_CODING CG14913 INTRON Samuel
3L	8799270	3L_8799270_SNP [dm3] 3L_8806170_SNP [dm6]	G	A	3.285e^-4	0.938	SYNONYMOUS_CODING CG13312 DOWNSTREAM CG34427	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19505705	2R_19505705_SNP [dm3] 2R_23618182_SNP [dm6]	G	A	3.286e^-4	0.938	INTERGENIC
3R	14531062	3R_14531062_SNP [dm3] 3R_18705340_SNP [dm6]	A	T	3.286e^-4	0.938	UPSTREAM VAChT & 1 other INTERGENIC
3L	2123199	3L_2123199_SNP [dm3] 3L_2123199_SNP [dm6]	C	T	3.287e^-4	0.938	INTRON zormin
3L	6268940	3L_6268940_SNP [dm3] 3L_6275840_SNP [dm6]	A	C	3.298e^-4	0.938	NON_SYNONYMOUS_CODING CG43168
X	15772279	X_15772279_SNP [dm3] X_15878246_SNP [dm6]	C	T	3.299e^-4	0.938	SYNONYMOUS_CODING tay	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19505745	2R_19505745_SNP [dm3] 2R_23618222_SNP [dm6]	G	A	3.308e^-4	0.938	INTERGENIC
3L	4108126	3L_4108126_SNP [dm3] 3L_4108126_SNP [dm6]	A	C	3.314e^-4	0.938	UPSTREAM Ack & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16642232	X_16642232_SNP [dm3] X_16748199_SNP [dm6]	T	C	3.318e^-4	0.938	INTRON CG9634
X	16642234	X_16642234_SNP [dm3] X_16748201_SNP [dm6]	T	C	3.318e^-4	0.938	INTRON CG9634
2L	19114035	2L_19114035_SNP [dm3] 2L_19114035_SNP [dm6]	T	C	3.323e^-4	0.938	UTR_3_PRIME amd UPSTREAM CG10561	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
2R	9844761	2R_9844761_SNP [dm3] 2R_13957256_SNP [dm6]	T	C	3.324e^-4	0.938	UTR_5_PRIME AGO1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	9978494	X_9978494_SNP [dm3] X_10084461_SNP [dm6]	T	G	3.329e^-4	0.938	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
3L	2123291	3L_2123291_SNP [dm3] 3L_2123291_SNP [dm6]	C	A	3.332e^-4	0.938	INTRON zormin
2R	9636345	2R_9636345_SNP [dm3] 2R_13748840_SNP [dm6]	A	C	3.336e^-4	0.938	UTR_3_PRIME fas
3R	14584800	3R_14584800_SNP [dm3] 3R_18759078_SNP [dm6]	G	A	3.342e^-4	0.938	UPSTREAM CG14299 DOWNSTREAM CG7720 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3R	12834949	3R_12834949_SNP [dm3] 3R_17009227_SNP [dm6]	C	G	3.350e^-4	0.938	INTRON CG8907
3L	2999416	3L_2999416_SNP [dm3] 3L_2999416_SNP [dm6]	C	T	3.355e^-4	0.938	INTERGENIC
3L	13228531	3L_13228531_DEL [dm3] 3L_13235431_DEL [dm6]	CC	C	3.359e^-4	0.938	INTRON caps
3L	13228538	3L_13228538_SNP [dm3] 3L_13235438_SNP [dm6]	T	G	3.359e^-4	0.938	INTRON caps
2L	7375392	2L_7375392_SNP [dm3] 2L_7375392_SNP [dm6]	A	G	3.363e^-4	0.938	SYNONYMOUS_CODING Wnt10
3L	4737662	3L_4737662_SNP [dm3] 3L_4737662_SNP [dm6]	G	A	3.366e^-4	0.938	INTRON RhoGEF64C
3L	18718764	3L_18718764_SNP [dm3] 3L_18725664_SNP [dm6]	A	C	3.376e^-4	0.938	INTERGENIC
2L	9638736	2L_9638736_SNP [dm3] 2L_9638736_SNP [dm6]	C	A	3.381e^-4	0.938	INTRON Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18432041	2R_18432041_SNP [dm3] 2R_22544536_SNP [dm6]	T	C	3.391e^-4	0.938	INTRON px	TF binding site mE1_TFBS_HSA
2L	7472321	2L_7472321_SNP [dm3] 2L_7472321_SNP [dm6]	A	G	3.394e^-4	0.938	UTR_3_PRIME CG6055 DOWNSTREAM Ziz
2L	4865096	2L_4865096_SNP [dm3] 2L_4865096_SNP [dm6]	C	T	3.395e^-4	0.938	INTRON pog
3R	22684852	3R_22684852_SNP [dm3] 3R_26859130_SNP [dm6]	C	T	3.399e^-4	0.938	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	14728202	2L_14728202_SNP [dm3] 2L_14728202_SNP [dm6]	T	A	3.405e^-4	0.938	INTRON CG42685
X	20115640	X_20115640_SNP [dm3] X_20244566_SNP [dm6]	C	T	3.410e^-4	0.938	UPSTREAM Peritrophin-A INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	14516409	X_14516409_SNP [dm3] X_14622376_SNP [dm6]	C	A	3.414e^-4	0.938	INTRON NetA
2L	17200760	2L_17200760_SNP [dm3] 2L_17200760_SNP [dm6]	G	T	3.415e^-4	0.938	INTRON beat-IIIc
2L	18394384	2L_18394384_SNP [dm3] 2L_18394384_SNP [dm6]	C	A	3.446e^-4	0.938	DOWNSTREAM Fas3 INTERGENIC
2L	18394385	2L_18394385_SNP [dm3] 2L_18394385_SNP [dm6]	T	C	3.446e^-4	0.938	DOWNSTREAM Fas3 INTERGENIC
2L	18394390	2L_18394390_SNP [dm3] 2L_18394390_SNP [dm6]	T	A	3.446e^-4	0.938	DOWNSTREAM Fas3 INTERGENIC
3R	23591405	3R_23591405_SNP [dm3] 3R_27765683_SNP [dm6]	A	C	3.452e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18912108	X_18912108_SNP [dm3] X_19018075_SNP [dm6]	A	G	3.472e^-4	0.938	INTRON CG43759
2L	10524828	2L_10524828_SNP [dm3] 2L_10524828_SNP [dm6]	C	G	3.481e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3004506	3L_3004506_SNP [dm3] 3L_3004506_SNP [dm6]	C	G	3.483e^-4	0.938	INTRON FMRFaR
2R	9862027	2R_9862027_DEL [dm3] 2R_13974522_DEL [dm6]	AC	A	3.498e^-4	0.938	INTRON CG6701	TF binding site mE1_TFBS_cad
3L	14483238	3L_14483238_SNP [dm3] 3L_14490138_SNP [dm6]	A	G	3.504e^-4	0.938	INTRON bbg
3L	14484001	3L_14484001_SNP [dm3] 3L_14490901_SNP [dm6]	A	C	3.504e^-4	0.938	INTRON bbg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	14501099	3L_14501099_SNP [dm3] 3L_14507999_SNP [dm6]	T	C	3.518e^-4	0.938	SYNONYMOUS_CODING bbg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2123328	3L_2123328_SNP [dm3] 3L_2123328_SNP [dm6]	G	A	3.545e^-4	0.938	SYNONYMOUS_CODING zormin INTRON zormin
2R	9869442	2R_9869442_SNP [dm3] 2R_13981937_SNP [dm6]	G	A	3.546e^-4	0.938	SYNONYMOUS_CODING Ctf4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	12067277	3L_12067277_SNP [dm3] 3L_12074177_SNP [dm6]	G	A	3.550e^-4	0.938	INTRON Sema-5c
2R	5912531	2R_5912531_SNP [dm3] 2R_10025026_SNP [dm6]	C	G	3.551e^-4	0.938	INTRON Pka-R2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15782495	2L_15782495_SNP [dm3] 2L_15782495_SNP [dm6]	A	T	3.552e^-4	0.938	INTERGENIC
2L	15782510	2L_15782510_MNP [dm3] 2L_15782510_MNP [dm6]	TGT	GTA	3.552e^-4	0.938	INTERGENIC
2L	15782520	2L_15782520_DEL [dm3] 2L_15782520_DEL [dm6]	AAA	A	3.552e^-4	0.938	INTERGENIC
X	9746339	X_9746339_SNP [dm3] X_9852306_SNP [dm6]	T	A	3.553e^-4	0.938	UTR_3_PRIME CG32698
X	9746350	X_9746350_SNP [dm3] X_9852317_SNP [dm6]	G	C	3.553e^-4	0.938	UTR_3_PRIME CG32698
X	9746364	X_9746364_SNP [dm3] X_9852331_SNP [dm6]	A	T	3.553e^-4	0.938	UTR_3_PRIME CG32698
X	9746390	X_9746390_SNP [dm3] X_9852357_SNP [dm6]	A	T	3.553e^-4	0.938	UTR_3_PRIME CG32698
X	9746403	X_9746403_SNP [dm3] X_9852370_SNP [dm6]	G	A	3.553e^-4	0.938	UTR_3_PRIME CG32698
2R	17774141	2R_17774141_SNP [dm3] 2R_21886636_SNP [dm6]	G	A	3.554e^-4	0.938	INTRON Fili
3R	12300540	3R_12300540_SNP [dm3] 3R_16474818_SNP [dm6]	T	C	3.565e^-4	0.938	SYNONYMOUS_CODING Gyc-89Da	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4651491	3L_4651491_SNP [dm3] 3L_4651491_SNP [dm6]	C	T	3.611e^-4	0.938	INTRON axo
2L	19729654	2L_19729654_SNP [dm3] 2L_19729654_SNP [dm6]	G	C	3.627e^-4	0.938	SPLICE_SITE_REGION Lar INTRON Lar
2R	7105959	2R_7105959_SNP [dm3] 2R_11218454_SNP [dm6]	G	T	3.630e^-4	0.938	INTRON CG9084	TF binding site BDTNP1_TFBS_dl
3R	5117816	3R_5117816_SNP [dm3] 3R_9292094_SNP [dm6]	G	A	3.648e^-4	0.938	INTERGENIC
3R	22567854	3R_22567854_SNP [dm3] 3R_26742132_SNP [dm6]	G	A	3.654e^-4	0.938	INTERGENIC
2R	7576983	2R_7576983_SNP [dm3] 2R_11689478_SNP [dm6]	T	C	3.655e^-4	0.938	SYNONYMOUS_CODING wal DOWNSTREAM Buffy	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	3199613	2R_3199613_SNP [dm3] 2R_7312108_SNP [dm6]	C	T	3.658e^-4	0.938	SYNONYMOUS_CODING CG12164
2L	6165961	2L_6165961_SNP [dm3] 2L_6165961_SNP [dm6]	A	G	3.661e^-4	0.938	INTERGENIC
3R	14092591	3R_14092591_SNP [dm3] 3R_18266869_SNP [dm6]	C	A	3.672e^-4	0.938	UPSTREAM CG18599 INTERGENIC
2R	19721878	2R_19721878_SNP [dm3] 2R_23834355_SNP [dm6]	C	T	3.672e^-4	0.938	SYNONYMOUS_CODING CG5549	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	3915214	3L_3915214_INS [dm3] 3L_3915214_INS [dm6]	T	TTTAAGTAAAGTAAT...	3.675e^-4	0.938	INTRON Eip63F-1
3R	26062958	3R_26062958_SNP [dm3] 3R_30237236_SNP [dm6]	C	T	3.675e^-4	0.938	UTR_3_PRIME CG43448	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1977688	2L_1977688_SNP [dm3] 2L_1977688_SNP [dm6]	T	C	3.676e^-4	0.938	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14723185	2L_14723185_SNP [dm3] 2L_14723185_SNP [dm6]	T	G	3.679e^-4	0.938	INTERGENIC
2L	9035191	2L_9035191_SNP [dm3] 2L_9035191_SNP [dm6]	G	T	3.682e^-4	0.938	INTERGENIC
2L	900944	2L_900944_SNP [dm3] 2L_900944_SNP [dm6]	T	C	3.696e^-4	0.938	SYNONYMOUS_CODING Lsp1beta DOWNSTREAM snRNA:U1:21D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14972053	2L_14972053_SNP [dm3] 2L_14972053_SNP [dm6]	A	T	3.702e^-4	0.938	UTR_5_PRIME CG42313
2R	5908825	2R_5908825_SNP [dm3] 2R_10021320_SNP [dm6]	T	C	3.702e^-4	0.938	INTRON Pka-R2
3R	20015483	3R_20015483_SNP [dm3] 3R_24189761_SNP [dm6]	A	C	3.709e^-4	0.938	SYNONYMOUS_CODING jnj UPSTREAM CG5515	TF binding site mE1_TFBS_sens
2L	10252475	2L_10252475_SNP [dm3] 2L_10252475_SNP [dm6]	T	C	3.712e^-4	0.938	DOWNSTREAM CG31717 INTRON Ror
3L	7434854	3L_7434854_SNP [dm3] 3L_7441754_SNP [dm6]	T	C	3.713e^-4	0.938	INTRON CG42458
2R	16102549	2R_16102549_SNP [dm3] 2R_20215044_SNP [dm6]	A	C	3.714e^-4	0.938	INTERGENIC
X	2783805	X_2783805_SNP [dm3] X_2889772_SNP [dm6]	G	A	3.714e^-4	0.938	UPSTREAM CG3526 INTRON kirre
3R	19221542	3R_19221542_SNP [dm3] 3R_23395820_SNP [dm6]	A	T	3.716e^-4	0.938	INTERGENIC
3R	19221544	3R_19221544_SNP [dm3] 3R_23395822_SNP [dm6]	G	A	3.716e^-4	0.938	INTERGENIC
X	5493711	X_5493711_SNP [dm3] X_5599678_SNP [dm6]	T	A	3.735e^-4	0.938	INTRON Vsx1	TF binding site BDTNP1_TFBS_dl
3R	15077663	3R_15077663_SNP [dm3] 3R_19251941_SNP [dm6]	T	C	3.743e^-4	0.938	INTERGENIC
3R	10949665	3R_10949665_SNP [dm3] 3R_15123943_SNP [dm6]	T	G	3.747e^-4	0.938	INTRON CG42788
3L	5005815	3L_5005815_SNP [dm3] 3L_5005815_SNP [dm6]	G	A	3.752e^-4	0.938	INTRON Con
2L	14888475	2L_14888475_SNP [dm3] 2L_14888475_SNP [dm6]	G	A	3.753e^-4	0.938	INTERGENIC
2L	11152787	2L_11152787_INS [dm3] 2L_11152787_INS [dm6]	C	CTCACAAC	3.753e^-4	0.938	INTRON CG6287	TF binding site mE1_TFBS_cad
3L	13890460	3L_13890460_SNP [dm3] 3L_13897360_SNP [dm6]	G	A	3.755e^-4	0.938	INTRON dysc
2L	20413572	2L_20413572_SNP [dm3] 2L_20413572_SNP [dm6]	A	T	3.766e^-4	0.938	INTRON CG10947
3L	9654861	3L_9654861_SNP [dm3] 3L_9661761_SNP [dm6]	G	C	3.773e^-4	0.938	INTRON fry	TF binding site BDTNP1_TFBS_twi
2R	7109505	2R_7109505_SNP [dm3] 2R_11222000_SNP [dm6]	G	A	3.774e^-4	0.938	UTR_3_PRIME Syx6 UPSTREAM CG7737
X	7804852	X_7804852_SNP [dm3] X_7910819_SNP [dm6]	C	A	3.793e^-4	0.938	INTRON CG1444
2L	18872008	2L_18872008_SNP [dm3] 2L_18872008_SNP [dm6]	T	A	3.793e^-4	0.938	INTRON tup	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	5899266	2R_5899266_DEL [dm3] 2R_10011761_DEL [dm6]	AAGA	A	3.800e^-4	0.938	DOWNSTREAM mir-4967 INTRON Pka-R2
2R	13544657	2R_13544657_SNP [dm3] 2R_17657152_SNP [dm6]	G	A	3.801e^-4	0.938	INTRON CCHa1-R	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	6166237	2L_6166237_SNP [dm3] 2L_6166237_SNP [dm6]	A	T	3.811e^-4	0.938	INTERGENIC
3R	27505197	3R_27505197_INS [dm3] 3R_31679475_INS [dm6]	G	GG	3.814e^-4	0.938	INTRON CG11550	TF binding site mE1_TFBS_sens
3R	12847223	3R_12847223_SNP [dm3] 3R_17021501_SNP [dm6]	C	A	3.819e^-4	0.938	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22940745	3R_22940745_SNP [dm3] 3R_27115023_SNP [dm6]	T	A	3.826e^-4	0.938	UTR_3_PRIME CG5815 DOWNSTREAM CG6066
3L	5486365	3L_5486365_SNP [dm3] 3L_5493265_SNP [dm6]	G	T	3.834e^-4	0.938	DOWNSTREAM CR44520 INTERGENIC
3R	19586958	3R_19586958_SNP [dm3] 3R_23761236_SNP [dm6]	G	A	3.837e^-4	0.938	SYNONYMOUS_CODING CG10217 UPSTREAM CG10219	TF binding site mE1_TFBS_sens
2R	17390123	2R_17390123_SNP [dm3] 2R_21502618_SNP [dm6]	G	A	3.845e^-4	0.938	UPSTREAM TAF1C-like INTRON MESK2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18575499	3L_18575499_SNP [dm3] 3L_18582399_SNP [dm6]	T	A	3.845e^-4	0.938	INTERGENIC
2R	9701579	2R_9701579_SNP [dm3] 2R_13814074_SNP [dm6]	C	T	3.855e^-4	0.938	SPLICE_SITE_REGION stj INTRON stj
3R	13039321	3R_13039321_SNP [dm3] 3R_17213599_SNP [dm6]	G	T	3.865e^-4	0.938	INTERGENIC
3L	13473681	3L_13473681_SNP [dm3] 3L_13480581_SNP [dm6]	T	A	3.880e^-4	0.938	UTR_5_PRIME stv UPSTREAM stv INTRON stv
3R	6828315	3R_6828315_SNP [dm3] 3R_11002593_SNP [dm6]	G	C	3.883e^-4	0.938	INTRON CG34114
2L	17213966	2L_17213966_SNP [dm3] 2L_17213966_SNP [dm6]	G	A	3.883e^-4	0.938	INTRON beat-IIIc	insulator Insulator_Class_II.mE01 TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	11990730	3R_11990730_SNP [dm3] 3R_16165008_SNP [dm6]	T	C	3.884e^-4	0.938	INTRON CG6006
X	14516403	X_14516403_SNP [dm3] X_14622370_SNP [dm6]	C	A	3.897e^-4	0.938	INTRON NetA
3R	26059208	3R_26059208_SNP [dm3] 3R_30233486_SNP [dm6]	A	C	3.904e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19995398	X_19995398_SNP [dm3] X_20101365_SNP [dm6]	G	A	3.911e^-4	0.938	INTERGENIC	transposable element FlyBase
3L	9409376	3L_9409376_SNP [dm3] 3L_9416276_SNP [dm6]	A	G	3.920e^-4	0.938	SYNONYMOUS_CODING CG3982 INTRON CG3967	TF binding site mE1_TFBS_cad
3R	12847203	3R_12847203_SNP [dm3] 3R_17021481_SNP [dm6]	T	C	3.922e^-4	0.938	UPSTREAM AdSL INTRON Pxd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	5220916	X_5220916_SNP [dm3] X_5326883_SNP [dm6]	T	G	3.936e^-4	0.938	UTR_3_PRIME CG3309 DOWNSTREAM Mcm3
2L	6166717	2L_6166717_INS [dm3] 2L_6166717_INS [dm6]	T	AC	3.945e^-4	0.938	INTERGENIC
3R	11305530	3R_11305530_INS [dm3] 3R_15479808_INS [dm6]	GC	TAG	3.948e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4740522	2L_4740522_SNP [dm3] 2L_4740522_SNP [dm6]	C	G	3.949e^-4	0.938	INTRON CG15630
3R	14702375	3R_14702375_SNP [dm3] 3R_18876653_SNP [dm6]	G	C	3.951e^-4	0.938	INTRON CG14298
2L	1893016	2L_1893016_SNP [dm3] 2L_1893016_SNP [dm6]	A	G	3.958e^-4	0.938	INTRON CG7337
2L	2380720	2L_2380720_SNP [dm3] 2L_2380720_SNP [dm6]	G	A	3.962e^-4	0.938	UPSTREAM Eogt DOWNSTREAM Atxn7 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12021278	3L_12021278_SNP [dm3] 3L_12028178_SNP [dm6]	C	G	3.975e^-4	0.938	DOWNSTREAM CR43994 INTRON rols
3L	6866823	3L_6866823_SNP [dm3] 3L_6873723_SNP [dm6]	G	A	3.977e^-4	0.938	INTERGENIC
3R	11282749	3R_11282749_SNP [dm3] 3R_15457027_SNP [dm6]	A	G	3.984e^-4	0.938	INTRON AdamTS-A
3R	21513626	3R_21513626_INS [dm3] 3R_25687904_INS [dm6]	A	ACAATA	3.987e^-4	0.938	UPSTREAM CLS INTERGENIC
3L	4910381	3L_4910381_SNP [dm3] 3L_4910381_SNP [dm6]	C	G	4.002e^-4	0.938	UTR_5_PRIME Rh50
2L	1892964	2L_1892964_SNP [dm3] 2L_1892964_SNP [dm6]	A	G	4.008e^-4	0.938	INTRON CG7337
2L	3455598	2L_3455598_SNP [dm3] 2L_3455598_SNP [dm6]	T	C	4.010e^-4	0.938	SYNONYMOUS_CODING Cog3	TF binding site mE1_TFBS_cad
2L	18632272	2L_18632272_INS [dm3] 2L_18632272_INS [dm6]	T	TGT	4.019e^-4	0.938	INTRON MESR3
2L	15403355	2L_15403355_SNP [dm3] 2L_15403355_SNP [dm6]	T	A	4.026e^-4	0.938	INTERGENIC
X	3763687	X_3763687_SNP [dm3] X_3869654_SNP [dm6]	C	A	4.033e^-4	0.938	SPLICE_SITE_REGION yin UTR_5_PRIME CG2930 INTRON yin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17054338	2L_17054338_DEL [dm3] 2L_17054338_DEL [dm6]	ATAATTTGTATTGGGTTTCT...	A	4.034e^-4	0.938	INTERGENIC
2L	3167084	2L_3167084_SNP [dm3] 2L_3167084_SNP [dm6]	A	G	4.045e^-4	0.938	SYNONYMOUS_CODING Hydr2
2R	2685166	2R_2685166_DEL [dm3] 2R_6797661_DEL [dm6]	GCTTGTGTGTG...	G	4.047e^-4	0.938	INTRON Epac
2R	19501264	2R_19501264_SNP [dm3] 2R_23613741_SNP [dm6]	T	C	4.052e^-4	0.938	INTRON CG17664 & 1 other
2R	19501280	2R_19501280_SNP [dm3] 2R_23613757_SNP [dm6]	A	G	4.052e^-4	0.938	INTRON CG17664 & 1 other
2R	19505469	2R_19505469_SNP [dm3] 2R_23617946_SNP [dm6]	G	C	4.052e^-4	0.938	INTERGENIC
2R	19505523	2R_19505523_SNP [dm3] 2R_23618000_SNP [dm6]	G	T	4.052e^-4	0.938	INTERGENIC
2R	19505536	2R_19505536_SNP [dm3] 2R_23618013_SNP [dm6]	C	T	4.052e^-4	0.938	INTERGENIC
3R	22447994	3R_22447994_SNP [dm3] 3R_26622272_SNP [dm6]	G	T	4.055e^-4	0.938	UPSTREAM TwdlP DOWNSTREAM TwdlB INTERGENIC
2R	16024409	2R_16024409_SNP [dm3] 2R_20136904_SNP [dm6]	A	G	4.064e^-4	0.938	UPSTREAM CR44635 & 1 other DOWNSTREAM CR44634 INTERGENIC
2L	5475914	2L_5475914_SNP [dm3] 2L_5475914_SNP [dm6]	T	C	4.070e^-4	0.938	INTERGENIC
2R	6733587	2R_6733587_SNP [dm3] 2R_10846082_SNP [dm6]	C	T	4.071e^-4	0.938	INTRON CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23191823	3R_23191823_SNP [dm3] 3R_27366101_SNP [dm6]	G	C	4.075e^-4	0.938	DOWNSTREAM CR43476 INTRON CG42534
3L	6910059	3L_6910059_SNP [dm3] 3L_6916959_SNP [dm6]	T	C	4.079e^-4	0.938	INTERGENIC
3R	20368420	3R_20368420_SNP [dm3] 3R_24542698_SNP [dm6]	T	C	4.097e^-4	0.938	INTRON CG5789
3L	13096277	3L_13096277_SNP [dm3] 3L_13103177_SNP [dm6]	A	C	4.104e^-4	0.938	INTERGENIC
3R	15077465	3R_15077465_SNP [dm3] 3R_19251743_SNP [dm6]	C	T	4.105e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	20665463	2L_20665463_DEL [dm3] 2L_20665463_DEL [dm6]	TT	T	4.108e^-4	0.938	UPSTREAM CG31678 INTRON CG31678 EXON CR45004
3R	17064851	3R_17064851_SNP [dm3] 3R_21239129_SNP [dm6]	C	T	4.120e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs
2L	4336887	2L_4336887_SNP [dm3] 2L_4336887_SNP [dm6]	T	C	4.123e^-4	0.938	NON_SYNONYMOUS_CODING Atet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
X	13956214	X_13956214_SNP [dm3] X_14062181_SNP [dm6]	C	T	4.133e^-4	0.938	UPSTREAM Ste:CG33236 INTERGENIC
2L	11868453	2L_11868453_SNP [dm3] 2L_11868453_SNP [dm6]	C	A	4.138e^-4	0.938	INTRON Pde1c
3L	12872080	3L_12872080_SNP [dm3] 3L_12878980_SNP [dm6]	T	C	4.146e^-4	0.938	INTERGENIC
X	14516399	X_14516399_SNP [dm3] X_14622366_SNP [dm6]	C	T	4.146e^-4	0.938	INTRON NetA
2L	1039611	2L_1039611_SNP [dm3] 2L_1039611_SNP [dm6]	G	A	4.147e^-4	0.938	DOWNSTREAM CG4415 INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14087734	2R_14087734_SNP [dm3] 2R_18200229_SNP [dm6]	G	C	4.154e^-4	0.938	INTERGENIC
X	19182089	X_19182089_SNP [dm3] X_19288056_SNP [dm6]	A	G	4.156e^-4	0.938	INTRON CG8034	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1656355	2L_1656355_DEL [dm3] 2L_1656355_DEL [dm6]	TCT	T	4.161e^-4	0.938	INTRON chinmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	25160685	3R_25160685_SNP [dm3] 3R_29334963_SNP [dm6]	C	G	4.164e^-4	0.938	INTERGENIC
3L	2697605	3L_2697605_SNP [dm3] 3L_2697605_SNP [dm6]	G	A	4.167e^-4	0.938	INTRON Fife
3L	5484415	3L_5484415_SNP [dm3] 3L_5491315_SNP [dm6]	C	T	4.178e^-4	0.938	INTERGENIC
3L	5100530	3L_5100530_SNP [dm3] 3L_5100530_SNP [dm6]	C	A	4.182e^-4	0.938	UPSTREAM CR34047 INTERGENIC
3L	4867674	3L_4867674_SNP [dm3] 3L_4867674_SNP [dm6]	A	G	4.183e^-4	0.938	INTRON CG17150
2L	9638727	2L_9638727_SNP [dm3] 2L_9638727_SNP [dm6]	C	T	4.187e^-4	0.938	INTRON Apoltp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25530334	3R_25530334_SNP [dm3] 3R_29704612_SNP [dm6]	A	G	4.192e^-4	0.938	INTERGENIC
3L	14617665	3L_14617665_SNP [dm3] 3L_14624565_SNP [dm6]	G	T	4.194e^-4	0.938	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	12743831	3R_12743831_SNP [dm3] 3R_16918109_SNP [dm6]	A	G	4.207e^-4	0.938	INTRON iab-8
3R	12756615	3R_12756615_INS [dm3] 3R_16930893_INS [dm6]	T	TT	4.207e^-4	0.938	INTRON Abd-B
3R	12756660	3R_12756660_INS [dm3] 3R_16930938_INS [dm6]	T	TA	4.207e^-4	0.938	INTRON Abd-B
2R	9333650	2R_9333650_SNP [dm3] 2R_13446145_SNP [dm6]	A	T	4.207e^-4	0.938	NON_SYNONYMOUS_CODING CG30062 UPSTREAM cnn INTRON cnn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7476575	3L_7476575_SNP [dm3] 3L_7483475_SNP [dm6]	C	T	4.212e^-4	0.938	INTERGENIC
2L	2214402	2L_2214402_DEL [dm3] 2L_2214402_DEL [dm6]	AC	A	4.218e^-4	0.938	UPSTREAM Uch DOWNSTREAM CG10880 INTRON CG34174	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	5493640	X_5493640_SNP [dm3] X_5599607_SNP [dm6]	C	A	4.221e^-4	0.938	INTRON Vsx1
3R	11305533	3R_11305533_SNP [dm3] 3R_15479811_SNP [dm6]	A	T	4.225e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11305534	3R_11305534_SNP [dm3] 3R_15479812_SNP [dm6]	G	C	4.225e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	11307572	3R_11307572_SNP [dm3] 3R_15481850_SNP [dm6]	G	A	4.225e^-4	0.938	UPSTREAM CG14870 INTERGENIC
3R	11308739	3R_11308739_SNP [dm3] 3R_15483017_SNP [dm6]	G	A	4.225e^-4	0.938	UPSTREAM Rh6 DOWNSTREAM CG14870 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12855852	3R_12855852_SNP [dm3] 3R_17030130_SNP [dm6]	A	T	4.226e^-4	0.938	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	20468540	2L_20468540_SNP [dm3] 2L_20468540_SNP [dm6]	T	C	4.230e^-4	0.938	INTRON CR44980
X	7804841	X_7804841_SNP [dm3] X_7910808_SNP [dm6]	G	A	4.248e^-4	0.938	INTRON CG1444
2L	4313604	2L_4313604_SNP [dm3] 2L_4313604_SNP [dm6]	T	G	4.249e^-4	0.938	INTRON tutl
3R	20044586	3R_20044586_SNP [dm3] 3R_24218864_SNP [dm6]	C	G	4.253e^-4	0.938	UPSTREAM CG17786 INTRON twin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14769610	2R_14769610_SNP [dm3] 2R_18882105_SNP [dm6]	C	T	4.279e^-4	0.938	INTRON sano
3L	3546737	3L_3546737_SNP [dm3] 3L_3546737_SNP [dm6]	T	C	4.290e^-4	0.938	INTRON Eip63E
2L	17129270	2L_17129270_SNP [dm3] 2L_17129270_SNP [dm6]	T	C	4.293e^-4	0.938	INTERGENIC
3R	11282710	3R_11282710_SNP [dm3] 3R_15456988_SNP [dm6]	T	G	4.294e^-4	0.938	INTRON AdamTS-A
2R	18897780	2R_18897780_DEL [dm3] 2R_23010257_DEL [dm6]	AA	A	4.294e^-4	0.938	DOWNSTREAM CG42741 INTRON twi	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13720325	3R_13720325_SNP [dm3] 3R_17894603_SNP [dm6]	C	T	4.296e^-4	0.938	NON_SYNONYMOUS_CODING Rim INTRON Rim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25439544	3R_25439544_SNP [dm3] 3R_29613822_SNP [dm6]	A	G	4.296e^-4	0.938	INTRON alph
3R	10967268	3R_10967268_SNP [dm3] 3R_15141546_SNP [dm6]	G	C	4.304e^-4	0.938	UTR_3_PRIME CG3987 DOWNSTREAM GlyS	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
4	69351	4_69351_SNP [dm3] 4_48725_SNP [dm6]	C	A	4.305e^-4	0.938	NON_SYNONYMOUS_CODING ci UTR_3_PRIME ci	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25906145	3R_25906145_SNP [dm3] 3R_30080423_SNP [dm6]	G	C	4.311e^-4	0.938	INTRON sima
2L	15308018	2L_15308018_SNP [dm3] 2L_15308018_SNP [dm6]	A	T	4.336e^-4	0.938	INTERGENIC
3L	823556	3L_823556_SNP [dm3] 3L_823556_SNP [dm6]	T	C	4.354e^-4	0.938	INTERGENIC
3R	17064803	3R_17064803_DEL [dm3] 3R_21239081_DEL [dm6]	TCTGC	T	4.357e^-4	0.938	INTERGENIC	regulatory region REDfly_CRMs
3R	27455754	3R_27455754_SNP [dm3] 3R_31630032_SNP [dm6]	A	G	4.360e^-4	0.938	INTRON kek6
2L	19110807	2L_19110807_SNP [dm3] 2L_19110807_SNP [dm6]	A	G	4.369e^-4	0.938	DOWNSTREAM CR44905 INTRON amd
3R	14093822	3R_14093822_SNP [dm3] 3R_18268100_SNP [dm6]	C	A	4.369e^-4	0.938	INTRON CG18599	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2L	8039464	2L_8039464_SNP [dm3] 2L_8039464_SNP [dm6]	T	A	4.375e^-4	0.938	UTR_3_PRIME Cka DOWNSTREAM Cka INTRON CG7367	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6348180	2R_6348180_SNP [dm3] 2R_10460675_SNP [dm6]	T	C	4.383e^-4	0.938	INTRON Galphao	TF binding site mE1_TFBS_HSA
2L	8499499	2L_8499499_SNP [dm3] 2L_8499499_SNP [dm6]	T	G	4.386e^-4	0.938	INTRON Dh31
2L	3929232	2L_3929232_SNP [dm3] 2L_3929232_SNP [dm6]	C	T	4.389e^-4	0.938	INTRON fred
3R	11212020	3R_11212020_SNP [dm3] 3R_15386298_SNP [dm6]	C	T	4.390e^-4	0.938	INTRON Rbp
3L	13897671	3L_13897671_SNP [dm3] 3L_13904571_SNP [dm6]	A	T	4.395e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	13448657	X_13448657_SNP [dm3] X_13554624_SNP [dm6]	T	A	4.399e^-4	0.938	UPSTREAM CG11816 INTRON CG11816
3L	9055826	3L_9055826_SNP [dm3] 3L_9062726_SNP [dm6]	T	C	4.417e^-4	0.938	INTRON Argk	TF binding site mE1_TFBS_bab1
3R	26063680	3R_26063680_SNP [dm3] 3R_30237958_SNP [dm6]	A	G	4.421e^-4	0.938	UPSTREAM CG43448 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	19110874	2L_19110874_SNP [dm3] 2L_19110874_SNP [dm6]	G	C	4.427e^-4	0.938	UPSTREAM amd DOWNSTREAM CR44905 INTRON amd	TF binding site mE1_TFBS_HSA
2L	8992680	2L_8992680_SNP [dm3] 2L_8992680_SNP [dm6]	T	A	4.428e^-4	0.938	INTRON CG9555
3L	1117556	3L_1117556_SNP [dm3] 3L_1117556_SNP [dm6]	G	A	4.435e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14532872	3R_14532872_SNP [dm3] 3R_18707150_SNP [dm6]	C	T	4.439e^-4	0.938	INTRON VAChT & 1 other
3R	14532874	3R_14532874_SNP [dm3] 3R_18707152_SNP [dm6]	G	C	4.439e^-4	0.938	INTRON VAChT & 1 other
3L	14616896	3L_14616896_SNP [dm3] 3L_14623796_SNP [dm6]	A	G	4.442e^-4	0.938	INTRON CG9628	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14728153	2L_14728153_SNP [dm3] 2L_14728153_SNP [dm6]	C	T	4.451e^-4	0.938	INTRON CG42685
X	8552875	X_8552875_SNP [dm3] X_8658842_SNP [dm6]	A	T	4.461e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	7749808	3L_7749808_SNP [dm3] 3L_7756708_SNP [dm6]	T	A	4.471e^-4	0.938	UTR_5_PRIME CG32373 INTRON CG32373
2R	3814423	2R_3814423_SNP [dm3] 2R_7926918_SNP [dm6]	C	G	4.472e^-4	0.938	UPSTREAM CG8791 INTRON CG8791
2L	2087403	2L_2087403_SNP [dm3] 2L_2087403_SNP [dm6]	A	T	4.481e^-4	0.938	INTRON dpr3
2L	5520201	2L_5520201_SNP [dm3] 2L_5520201_SNP [dm6]	G	A	4.484e^-4	0.938	UTR_5_PRIME cl UPSTREAM cl & 1 other	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	23530109	3R_23530109_SNP [dm3] 3R_27704387_SNP [dm6]	C	T	4.496e^-4	0.938	SPLICE_SITE_REGION CG12428 DOWNSTREAM btz INTRON CG12428	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	17199533	3R_17199533_SNP [dm3] 3R_21373811_SNP [dm6]	T	A	4.513e^-4	0.938	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	26534154	3R_26534154_SNP [dm3] 3R_30708432_SNP [dm6]	C	T	4.522e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5916203	2R_5916203_SNP [dm3] 2R_10028698_SNP [dm6]	T	C	4.524e^-4	0.938	UTR_3_PRIME CG1407 & 1 other DOWNSTREAM CG1407 & 1 other
2R	7109454	2R_7109454_SNP [dm3] 2R_11221949_SNP [dm6]	A	C	4.525e^-4	0.938	UTR_3_PRIME Syx6 UPSTREAM CG7737
2R	6482428	2R_6482428_SNP [dm3] 2R_10594923_SNP [dm6]	G	A	4.532e^-4	0.938	INTRON psq
2L	19107040	2L_19107040_INS [dm3] 2L_19107040_INS [dm6]	T	TTT	4.537e^-4	0.938	UPSTREAM Lim3 INTRON Lim3
3L	14475219	3L_14475219_SNP [dm3] 3L_14482119_SNP [dm6]	G	A	4.539e^-4	0.938	INTRON bbg
3R	25451807	3R_25451807_SNP [dm3] 3R_29626085_SNP [dm6]	T	A	4.546e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15331368	3R_15331368_DEL [dm3] 3R_19505646_DEL [dm6]	ATACA	A	4.553e^-4	0.938	INTRON Dys
3L	4521788	3L_4521788_SNP [dm3] 3L_4521788_SNP [dm6]	C	T	4.554e^-4	0.938	INTRON Tie
2L	9089456	2L_9089456_SNP [dm3] 2L_9089456_SNP [dm6]	C	A	4.578e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	17213065	2L_17213065_INS [dm3] 2L_17213065_INS [dm6]	T	TT	4.580e^-4	0.938	INTRON beat-IIIc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9046541	2L_9046541_SNP [dm3] 2L_9046541_SNP [dm6]	G	T	4.583e^-4	0.938	INTERGENIC
2L	14725194	2L_14725194_SNP [dm3] 2L_14725194_SNP [dm6]	A	G	4.583e^-4	0.938	SYNONYMOUS_CODING CG42685
3R	8032514	3R_8032514_SNP [dm3] 3R_12206792_SNP [dm6]	A	T	4.608e^-4	0.938	DOWNSTREAM tRNA:CR31356 INTERGENIC
2R	3872989	2R_3872989_SNP [dm3] 2R_7985484_SNP [dm6]	G	T	4.610e^-4	0.938	INTRON ACC
2L	13266432	2L_13266432_DEL [dm3] 2L_13266432_DEL [dm6]	CCGAGTGCGCAGATTCGATA...	C	4.620e^-4	0.938	UPSTREAM CG44085 & 1 other INTRON CG44085	TF binding site BDTNP1_TFBS_dl
3L	12866170	3L_12866170_SNP [dm3] 3L_12873070_SNP [dm6]	G	A	4.635e^-4	0.938	INTERGENIC
X	3764696	X_3764696_SNP [dm3] X_3870663_SNP [dm6]	T	G	4.640e^-4	0.938	INTRON yin & 1 other	TF binding site mE1_TFBS_inv
3R	10748335	3R_10748335_SNP [dm3] 3R_14922613_SNP [dm6]	T	A	4.649e^-4	0.938	UTR_3_PRIME Sdr DOWNSTREAM CR45598 & 1 other
3R	20044979	3R_20044979_DEL [dm3] 3R_24219257_DEL [dm6]	AA	A	4.650e^-4	0.938	UPSTREAM CG17786 INTRON twin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14020520	3R_14020520_SNP [dm3] 3R_18194798_SNP [dm6]	G	T	4.654e^-4	0.938	UTR_3_PRIME Ssdp DOWNSTREAM Ssdp
X	9746356	X_9746356_INS [dm3] X_9852323_INS [dm6]	A	AA	4.655e^-4	0.938	UTR_3_PRIME CG32698
3L	16041916	3L_16041916_SNP [dm3] 3L_16048816_SNP [dm6]	G	A	4.665e^-4	0.938	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	16041941	3L_16041941_INS [dm3] 3L_16048841_INS [dm6]	T	TAT	4.665e^-4	0.938	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	26566949	3R_26566949_SNP [dm3] 3R_30741227_SNP [dm6]	T	C	4.666e^-4	0.938	INTERGENIC
X	14246587	X_14246587_INS [dm3] X_14352554_INS [dm6]	T	TT	4.667e^-4	0.938	INTRON dpr8
2R	15435856	2R_15435856_SNP [dm3] 2R_19548351_SNP [dm6]	G	A	4.673e^-4	0.938	INTRON sm
X	8018534	X_8018534_SNP [dm3] X_8124501_SNP [dm6]	G	C	4.675e^-4	0.938	INTRON cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3205232	2R_3205232_SNP [dm3] 2R_7317727_SNP [dm6]	A	G	4.675e^-4	0.938	DOWNSTREAM Dscam1 INTERGENIC
3L	13228556	3L_13228556_SNP [dm3] 3L_13235456_SNP [dm6]	G	T	4.685e^-4	0.938	INTRON caps
X	12794337	X_12794337_SNP [dm3] X_12900304_SNP [dm6]	G	C	4.687e^-4	0.938	NON_SYNONYMOUS_CODING CG32649	TF binding site mE1_TFBS_chinmo
2L	18772217	2L_18772217_SNP [dm3] 2L_18772217_SNP [dm6]	T	A	4.692e^-4	0.938	UPSTREAM ham INTRON ham
3L	6890976	3L_6890976_SNP [dm3] 3L_6897876_SNP [dm6]	A	C	4.698e^-4	0.938	INTERGENIC
3L	10566402	3L_10566402_SNP [dm3] 3L_10573302_SNP [dm6]	C	G	4.703e^-4	0.938	INTRON A2bp1
3L	6059148	3L_6059148_SNP [dm3] 3L_6066048_SNP [dm6]	T	C	4.712e^-4	0.938	UPSTREAM CG42269 INTERGENIC
2R	13589113	2R_13589113_SNP [dm3] 2R_17701608_SNP [dm6]	T	A	4.713e^-4	0.938	UPSTREAM snoRNA:snR38:54Eb & 3 others DOWNSTREAM snoRNA:U76:54Eb & 3 others EXON Uhg1
3L	5442294	3L_5442294_SNP [dm3] 3L_5449194_SNP [dm6]	A	C	4.720e^-4	0.938	INTERGENIC
3R	18575246	3R_18575246_SNP [dm3] 3R_22749524_SNP [dm6]	C	T	4.724e^-4	0.938	SYNONYMOUS_CODING rumi UPSTREAM CG31139	TF binding site BDTNP1_TFBS_sna mE1_TFBS_sens
2L	14724468	2L_14724468_SNP [dm3] 2L_14724468_SNP [dm6]	T	A	4.727e^-4	0.938	DOWNSTREAM CG42685 INTERGENIC
3L	5678310	3L_5678310_SNP [dm3] 3L_5685210_SNP [dm6]	T	A	4.732e^-4	0.938	INTRON sif
3L	15035999	3L_15035999_SNP [dm3] 3L_15042899_SNP [dm6]	A	C	4.746e^-4	0.938	UTR_3_PRIME ind UPSTREAM Rpn12R INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	7431730	3L_7431730_SNP [dm3] 3L_7438630_SNP [dm6]	T	C	4.762e^-4	0.938	INTRON CG42458 & 1 other	TF binding site mE1_TFBS_inv
3L	18230238	3L_18230238_SNP [dm3] 3L_18237138_SNP [dm6]	A	T	4.767e^-4	0.938	INTERGENIC
2L	19092532	2L_19092532_SNP [dm3] 2L_19092532_SNP [dm6]	G	A	4.769e^-4	0.938	INTRON Lim3
3R	13039319	3R_13039319_SNP [dm3] 3R_17213597_SNP [dm6]	A	T	4.774e^-4	0.938	INTERGENIC
3L	17483743	3L_17483743_SNP [dm3] 3L_17490643_SNP [dm6]	T	A	4.776e^-4	0.938	INTRON Oatp74D
3L	4023660	3L_4023660_SNP [dm3] 3L_4023660_SNP [dm6]	A	T	4.779e^-4	0.938	DOWNSTREAM Mul1 INTRON CG11594
3L	4023663	3L_4023663_SNP [dm3] 3L_4023663_SNP [dm6]	G	A	4.779e^-4	0.938	DOWNSTREAM Mul1 INTRON CG11594
3L	4023673	3L_4023673_SNP [dm3] 3L_4023673_SNP [dm6]	T	G	4.779e^-4	0.938	DOWNSTREAM Mul1 INTRON CG11594
3L	4023676	3L_4023676_SNP [dm3] 3L_4023676_SNP [dm6]	G	A	4.779e^-4	0.938	DOWNSTREAM Mul1 INTRON CG11594
3L	4023679	3L_4023679_SNP [dm3] 3L_4023679_SNP [dm6]	G	T	4.779e^-4	0.938	DOWNSTREAM Mul1 INTRON CG11594
3L	12699583	3L_12699583_SNP [dm3] 3L_12706483_SNP [dm6]	A	G	4.781e^-4	0.938	INTRON mirr	TF binding site BDTNP1_TFBS_da
3L	14617612	3L_14617612_SNP [dm3] 3L_14624512_SNP [dm6]	C	G	4.795e^-4	0.938	INTRON CG9628	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	16148702	X_16148702_SNP [dm3] X_16254669_SNP [dm6]	G	A	4.798e^-4	0.938	UPSTREAM snRNA:U2:14B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6281628	2R_6281628_SNP [dm3] 2R_10394123_SNP [dm6]	A	C	4.814e^-4	0.938	INTRON CG42732	TF binding site BDTNP1_TFBS_twi
2L	14982493	2L_14982493_SNP [dm3] 2L_14982493_SNP [dm6]	A	T	4.817e^-4	0.938	INTRON mol
3R	25350392	3R_25350392_SNP [dm3] 3R_29524670_SNP [dm6]	T	A	4.823e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	16029368	3L_16029368_SNP [dm3] 3L_16036268_SNP [dm6]	A	T	4.825e^-4	0.938	SYNONYMOUS_CODING CG5895	TF binding site BDTNP1_TFBS_twi
3R	26518265	3R_26518265_SNP [dm3] 3R_30692543_SNP [dm6]	T	C	4.829e^-4	0.938	SYNONYMOUS_CODING Spn100A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15587095	2R_15587095_SNP [dm3] 2R_19699590_SNP [dm6]	T	C	4.832e^-4	0.938	UPSTREAM Obp56b DOWNSTREAM Obp56c INTERGENIC	regulatory region REDfly_CRMs
X	14510922	X_14510922_SNP [dm3] X_14616889_SNP [dm6]	C	T	4.838e^-4	0.938	INTRON NetA
3R	9331373	3R_9331373_SNP [dm3] 3R_13505651_SNP [dm6]	C	T	4.846e^-4	0.938	INTERGENIC
2R	8171561	2R_8171561_SNP [dm3] 2R_12284056_SNP [dm6]	C	G	4.852e^-4	0.938	INTRON CG42700
X	12909131	X_12909131_SNP [dm3] X_13015098_SNP [dm6]	C	T	4.858e^-4	0.938	INTRON rad
2R	13697397	2R_13697397_SNP [dm3] 2R_17809892_SNP [dm6]	T	A	4.868e^-4	0.938	INTRON grh	TF binding site BDTNP1_TFBS_da
3L	21703150	3L_21703150_SNP [dm3] 3L_21710050_SNP [dm6]	C	T	4.880e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24734907	3R_24734907_SNP [dm3] 3R_28909185_SNP [dm6]	T	A	4.887e^-4	0.938	SYNONYMOUS_CODING Doa UPSTREAM Doa INTRON Doa	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17704178	3L_17704178_SNP [dm3] 3L_17711078_SNP [dm6]	G	A	4.926e^-4	0.938	UTR_5_PRIME Ccn	TF binding site BDTNP1_TFBS_twi
2L	2847718	2L_2847718_SNP [dm3] 2L_2847718_SNP [dm6]	T	A	4.935e^-4	0.938	SYNONYMOUS_CODING CG2983 UPSTREAM CG3117
3L	6565280	3L_6565280_SNP [dm3] 3L_6572180_SNP [dm6]	G	A	4.941e^-4	0.938	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_cad
2L	2807191	2L_2807191_SNP [dm3] 2L_2807191_SNP [dm6]	T	C	4.943e^-4	0.938	INTRON daw	TF binding site BDTNP1_TFBS_dl
4	425568	4_425568_SNP [dm3] 4_404942_SNP [dm6]	G	A	4.944e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16993889	2R_16993889_SNP [dm3] 2R_21106384_SNP [dm6]	T	C	4.944e^-4	0.938	INTRON ktub
2L	15088648	2L_15088648_SNP [dm3] 2L_15088648_SNP [dm6]	T	C	4.953e^-4	0.938	INTRON CG15270
3R	6950722	3R_6950722_SNP [dm3] 3R_11125000_SNP [dm6]	A	G	4.956e^-4	0.938	INTERGENIC
3R	12805142	3R_12805142_SNP [dm3] 3R_16979420_SNP [dm6]	T	A	4.959e^-4	0.938	INTRON Ahcy89E	TF binding site mE1_TFBS_sens
3L	18834388	3L_18834388_SNP [dm3] 3L_18841288_SNP [dm6]	T	A	4.960e^-4	0.938	UTR_5_PRIME Indy UPSTREAM Indy & 1 other INTRON Indy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	1147978	3L_1147978_SNP [dm3] 3L_1147978_SNP [dm6]	A	T	4.961e^-4	0.938	INTRON bab2
2L	15006449	2L_15006449_SNP [dm3] 2L_15006449_SNP [dm6]	T	C	4.968e^-4	0.938	SYNONYMOUS_CODING dyn-p25 DOWNSTREAM l_2_35Be	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	6493046	2L_6493046_SNP [dm3] 2L_6493046_SNP [dm6]	T	A	4.969e^-4	0.938	UTR_3_PRIME CG9547 INTRON CG31638	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14996474	2R_14996474_SNP [dm3] 2R_19108969_SNP [dm6]	A	T	4.972e^-4	0.938	INTRON 5-HT1A
2L	3466733	2L_3466733_SNP [dm3] 2L_3466733_SNP [dm6]	G	T	4.984e^-4	0.938	UPSTREAM msl-2 DOWNSTREAM CG3238 INTRON Pdsw	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	3325848	X_3325848_SNP [dm3] X_3431815_SNP [dm6]	C	A	4.993e^-4	0.938	INTRON CR44999 & 1 other
2L	4206834	2L_4206834_SNP [dm3] 2L_4206834_SNP [dm6]	T	C	5.000e^-4	0.938	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	14769462	2R_14769462_SNP [dm3] 2R_18881957_SNP [dm6]	C	A	5.019e^-4	0.938	INTRON sano	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25451031	3R_25451031_SNP [dm3] 3R_29625309_SNP [dm6]	A	C	5.023e^-4	0.938	INTERGENIC
3R	25451095	3R_25451095_SNP [dm3] 3R_29625373_SNP [dm6]	T	C	5.023e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25453873	3R_25453873_INS [dm3] 3R_29628151_INS [dm6]	G	GTTGGGGG	5.023e^-4	0.938	INTERGENIC
3R	25454217	3R_25454217_SNP [dm3] 3R_29628495_SNP [dm6]	T	C	5.023e^-4	0.938	INTERGENIC
3R	25454338	3R_25454338_SNP [dm3] 3R_29628616_SNP [dm6]	T	A	5.023e^-4	0.938	INTERGENIC
3R	11303202	3R_11303202_SNP [dm3] 3R_15477480_SNP [dm6]	A	T	5.028e^-4	0.938	INTERGENIC
2R	18917080	2R_18917080_SNP [dm3] 2R_23029557_SNP [dm6]	C	G	5.031e^-4	0.938	INTRON twi & 1 other
2L	4296491	2L_4296491_SNP [dm3] 2L_4296491_SNP [dm6]	A	G	5.036e^-4	0.938	INTRON tutl
3R	26249105	3R_26249105_DEL [dm3] 3R_30423383_DEL [dm6]	AGCATAG	A	5.042e^-4	0.938	UTR_3_PRIME CG15535 UPSTREAM CG2217 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16872531	X_16872531_INS [dm3] X_16978498_INS [dm6]	T	TTTG	5.045e^-4	0.938	INTRON CG45002
2L	13552387	2L_13552387_SNP [dm3] 2L_13552387_SNP [dm6]	C	T	5.056e^-4	0.938	INTRON kuz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	1707238	3L_1707238_SNP [dm3] 3L_1707238_SNP [dm6]	A	G	5.057e^-4	0.938	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1707271	3L_1707271_SNP [dm3] 3L_1707271_SNP [dm6]	T	A	5.057e^-4	0.938	INTRON CG7991	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4651665	3L_4651665_SNP [dm3] 3L_4651665_SNP [dm6]	A	G	5.075e^-4	0.938	INTRON axo
2R	19524105	2R_19524105_SNP [dm3] 2R_23636582_SNP [dm6]	T	G	5.078e^-4	0.938	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19629742	X_19629742_SNP [dm3] X_19735709_SNP [dm6]	C	T	5.084e^-4	0.938	UTR_5_PRIME CG14234	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5967979	X_5967979_SNP [dm3] X_6073946_SNP [dm6]	T	C	5.091e^-4	0.938	UPSTREAM Tsp5D INTRON Tsp5D
3L	1117671	3L_1117671_INS [dm3] 3L_1117671_INS [dm6]	A	AAAGA	5.091e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	16042014	3L_16042014_SNP [dm3] 3L_16048914_SNP [dm6]	A	G	5.092e^-4	0.938	UPSTREAM CR43951 INTRON th	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10901505	3R_10901505_SNP [dm3] 3R_15075783_SNP [dm6]	A	T	5.099e^-4	0.938	INTRON dpr9
3L	3259013	3L_3259013_SNP [dm3] 3L_3259013_SNP [dm6]	A	T	5.106e^-4	0.938	INTRON ckd
2L	9065485	2L_9065485_SNP [dm3] 2L_9065485_SNP [dm6]	G	A	5.109e^-4	0.938	INTRON CG31708
3R	14093494	3R_14093494_SNP [dm3] 3R_18267772_SNP [dm6]	C	T	5.112e^-4	0.938	UPSTREAM CG18599 INTERGENIC	TF binding site mE1_TFBS_run
2L	9089547	2L_9089547_SNP [dm3] 2L_9089547_SNP [dm6]	A	C	5.120e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC
3R	16283747	3R_16283747_SNP [dm3] 3R_20458025_SNP [dm6]	C	T	5.121e^-4	0.938	INTRON Gfrl
3R	24064403	3R_24064403_SNP [dm3] 3R_28238681_SNP [dm6]	A	T	5.121e^-4	0.938	UTR_3_PRIME CG34354 UPSTREAM CR45041
2L	15308017	2L_15308017_SNP [dm3] 2L_15308017_SNP [dm6]	G	T	5.130e^-4	0.938	INTERGENIC
2L	20567278	2L_20567278_SNP [dm3] 2L_20567278_SNP [dm6]	G	A	5.132e^-4	0.938	INTRON CR45347
2L	2087373	2L_2087373_SNP [dm3] 2L_2087373_SNP [dm6]	A	G	5.138e^-4	0.938	INTRON dpr3
2L	15878694	2L_15878694_SNP [dm3] 2L_15878694_SNP [dm6]	A	G	5.140e^-4	0.938	NON_SYNONYMOUS_CODING CG7653	TF binding site mE1_TFBS_HSA
2L	15878703	2L_15878703_SNP [dm3] 2L_15878703_SNP [dm6]	G	A	5.140e^-4	0.938	NON_SYNONYMOUS_CODING CG7653	TF binding site mE1_TFBS_HSA
3L	15879547	3L_15879547_SNP [dm3] 3L_15886447_SNP [dm6]	G	A	5.146e^-4	0.938	UPSTREAM CR44050 INTRON pHCl
3L	7432086	3L_7432086_SNP [dm3] 3L_7438986_SNP [dm6]	G	A	5.148e^-4	0.938	SYNONYMOUS_CODING sphinx1 DOWNSTREAM sphinx2 INTRON CG42458	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18432046	2R_18432046_INS [dm3] 2R_22544541_INS [dm6]	A	AAA	5.156e^-4	0.938	INTRON px	TF binding site mE1_TFBS_HSA
3L	12091216	3L_12091216_SNP [dm3] 3L_12098116_SNP [dm6]	C	T	5.156e^-4	0.938	INTERGENIC
X	5443922	X_5443922_SNP [dm3] X_5549889_SNP [dm6]	C	G	5.166e^-4	0.938	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12625801	3R_12625801_SNP [dm3] 3R_16800079_SNP [dm6]	C	T	5.168e^-4	0.938	UPSTREAM CR45750 INTERGENIC	enhancer mE1_CBP_Enhancers
X	16181621	X_16181621_DEL [dm3] X_16287588_DEL [dm6]	AACAAAACAGA...	A	5.176e^-4	0.938	DOWNSTREAM CG3560 INTRON CG32576	TF binding site BDTNP1_TFBS_dl
2L	10536610	2L_10536610_SNP [dm3] 2L_10536610_SNP [dm6]	A	G	5.177e^-4	0.938	DOWNSTREAM CG18302 INTERGENIC
X	6879337	X_6879337_SNP [dm3] X_6985304_SNP [dm6]	G	A	5.183e^-4	0.938	DOWNSTREAM CR44084 INTRON ogre	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6076395	X_6076395_SNP [dm3] X_6182362_SNP [dm6]	T	C	5.204e^-4	0.938	INTRON Ca-alpha1T
X	16552268	X_16552268_SNP [dm3] X_16658235_SNP [dm6]	C	T	5.205e^-4	0.938	SYNONYMOUS_CODING r	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9582178	2R_9582178_SNP [dm3] 2R_13694673_SNP [dm6]	C	A	5.207e^-4	0.938	INTRON fas
2R	9582240	2R_9582240_SNP [dm3] 2R_13694735_SNP [dm6]	G	A	5.207e^-4	0.938	INTRON fas
3L	21703628	3L_21703628_SNP [dm3] 3L_21710528_SNP [dm6]	T	C	5.218e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1711559	3L_1711559_SNP [dm3] 3L_1711559_SNP [dm6]	C	G	5.239e^-4	0.938	INTRON CG7991
2L	14719115	2L_14719115_SNP [dm3] 2L_14719115_SNP [dm6]	T	A	5.241e^-4	0.938	INTERGENIC
3L	7434871	3L_7434871_SNP [dm3] 3L_7441771_SNP [dm6]	T	A	5.249e^-4	0.938	INTRON CG42458
3L	6475578	3L_6475578_SNP [dm3] 3L_6482478_SNP [dm6]	T	A	5.252e^-4	0.938	INTRON CG42747	TF binding site mE1_TFBS_inv
3L	5314189	3L_5314189_SNP [dm3] 3L_5321089_SNP [dm6]	T	A	5.255e^-4	0.938	INTERGENIC
2L	19135791	2L_19135791_INS [dm3] 2L_19135791_INS [dm6]	T	TGTAT	5.256e^-4	0.938	UPSTREAM l_2_37Cg INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4112236	3L_4112236_SNP [dm3] 3L_4112236_SNP [dm6]	A	G	5.263e^-4	0.938	SYNONYMOUS_CODING Ack	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18258376	3R_18258376_SNP [dm3] 3R_22432654_SNP [dm6]	T	C	5.265e^-4	0.938	INTRON CG13847
3R	26036977	3R_26036977_SNP [dm3] 3R_30211255_SNP [dm6]	C	A	5.270e^-4	0.938	UTR_3_PRIME CecA1 UPSTREAM Cec-Psi1 & 1 other DOWNSTREAM Anp
3L	7712183	3L_7712183_SNP [dm3] 3L_7719083_SNP [dm6]	C	A	5.271e^-4	0.938	UPSTREAM CG12262 & 1 other INTRON CG32373
2L	15321578	2L_15321578_SNP [dm3] 2L_15321578_SNP [dm6]	T	A	5.272e^-4	0.938	INTERGENIC
X	16645204	X_16645204_SNP [dm3] X_16751171_SNP [dm6]	C	T	5.277e^-4	0.938	INTRON CG9634	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Trl
2L	2087442	2L_2087442_SNP [dm3] 2L_2087442_SNP [dm6]	T	G	5.282e^-4	0.938	INTRON dpr3
3L	6922245	3L_6922245_SNP [dm3] 3L_6929145_SNP [dm6]	C	T	5.284e^-4	0.938	INTERGENIC
2R	17044183	2R_17044183_SNP [dm3] 2R_21156678_SNP [dm6]	T	G	5.286e^-4	0.938	INTRON CG30389	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	4717489	3L_4717489_SNP [dm3] 3L_4717489_SNP [dm6]	C	T	5.292e^-4	0.938	INTRON RhoGEF64C
3R	12037591	3R_12037591_SNP [dm3] 3R_16211869_SNP [dm6]	C	T	5.297e^-4	0.938	INTERGENIC
2R	11769341	2R_11769341_SNP [dm3] 2R_15881836_SNP [dm6]	A	G	5.303e^-4	0.938	INTRON sli
X	9978482	X_9978482_SNP [dm3] X_10084449_SNP [dm6]	T	C	5.306e^-4	0.938	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
3L	1117678	3L_1117678_SNP [dm3] 3L_1117678_SNP [dm6]	A	C	5.308e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	12374343	2R_12374343_SNP [dm3] 2R_16486838_SNP [dm6]	G	T	5.310e^-4	0.938	NON_SYNONYMOUS_CODING CG33458
3L	4072820	3L_4072820_SNP [dm3] 3L_4072820_SNP [dm6]	G	A	5.317e^-4	0.938	SYNONYMOUS_CODING Faa
2L	19109085	2L_19109085_SNP [dm3] 2L_19109085_SNP [dm6]	C	A	5.327e^-4	0.938	UPSTREAM Lim3 EXON CR44905	TF binding site BDTNP1_TFBS_dl
3L	4651643	3L_4651643_SNP [dm3] 3L_4651643_SNP [dm6]	A	T	5.332e^-4	0.938	INTRON axo
3R	11815620	3R_11815620_SNP [dm3] 3R_15989898_SNP [dm6]	T	G	5.333e^-4	0.938	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15911199	3L_15911199_SNP [dm3] 3L_15918099_SNP [dm6]	G	A	5.344e^-4	0.938	INTRON sff
3L	16547999	3L_16547999_SNP [dm3] 3L_16554899_SNP [dm6]	T	A	5.349e^-4	0.938	INTERGENIC
2L	9093077	2L_9093077_SNP [dm3] 2L_9093077_SNP [dm6]	G	A	5.349e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	12166858	2R_12166858_SNP [dm3] 2R_16279353_SNP [dm6]	C	A	5.350e^-4	0.938	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9495610	2R_9495610_SNP [dm3] 2R_13608105_SNP [dm6]	T	C	5.351e^-4	0.938	DOWNSTREAM CG12464 INTERGENIC
2L	11003496	2L_11003496_SNP [dm3] 2L_11003496_SNP [dm6]	C	A	5.352e^-4	0.938	DOWNSTREAM lectin-33A INTRON RpL9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	11607551	2R_11607551_SNP [dm3] 2R_15720046_SNP [dm6]	G	T	5.360e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	7102543	2R_7102543_SNP [dm3] 2R_11215038_SNP [dm6]	C	T	5.366e^-4	0.938	SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	18432050	2R_18432050_SNP [dm3] 2R_22544545_SNP [dm6]	A	G	5.367e^-4	0.938	INTRON px	TF binding site mE1_TFBS_HSA
3R	13795024	3R_13795024_SNP [dm3] 3R_17969302_SNP [dm6]	G	A	5.368e^-4	0.938	INTRON cpo
3R	25451784	3R_25451784_SNP [dm3] 3R_29626062_SNP [dm6]	C	T	5.369e^-4	0.938	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11418049	2L_11418049_SNP [dm3] 2L_11418049_SNP [dm6]	G	A	5.377e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	21746197	2L_21746197_INS [dm3] 2L_21746197_INS [dm6]	A	AGTA	5.379e^-4	0.938	CODON_INSERTION step INTRON step
3R	15077574	3R_15077574_SNP [dm3] 3R_19251852_SNP [dm6]	T	A	5.379e^-4	0.938	INTERGENIC
3R	15077587	3R_15077587_DEL [dm3] 3R_19251865_DEL [dm6]	GG	G	5.379e^-4	0.938	INTERGENIC
3R	15077594	3R_15077594_SNP [dm3] 3R_19251872_SNP [dm6]	T	A	5.379e^-4	0.938	INTERGENIC
3R	26722952	3R_26722952_SNP [dm3] 3R_30897230_SNP [dm6]	G	C	5.380e^-4	0.938	INTRON Cyp4c3
3L	5885948	3L_5885948_SNP [dm3] 3L_5892848_SNP [dm6]	T	A	5.392e^-4	0.938	INTERGENIC
2L	3490934	2L_3490934_SNP [dm3] 2L_3490934_SNP [dm6]	G	T	5.395e^-4	0.938	UTR_5_PRIME CG15414
3L	6059179	3L_6059179_SNP [dm3] 3L_6066079_SNP [dm6]	C	A	5.399e^-4	0.938	UPSTREAM CG42269 INTERGENIC
2L	15877185	2L_15877185_SNP [dm3] 2L_15877185_SNP [dm6]	G	A	5.400e^-4	0.938	UTR_3_PRIME CG7653
3L	4075231	3L_4075231_SNP [dm3] 3L_4075231_SNP [dm6]	G	A	5.402e^-4	0.938	UTR_3_PRIME Gad1
2R	4728597	2R_4728597_SNP [dm3] 2R_8841092_SNP [dm6]	T	A	5.407e^-4	0.938	INTRON sns	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16358712	3L_16358712_SNP [dm3] 3L_16365612_SNP [dm6]	G	A	5.410e^-4	0.938	NON_SYNONYMOUS_CODING Cpr72Eb DOWNSTREAM Cpr72Ec
2L	17867650	2L_17867650_SNP [dm3] 2L_17867650_SNP [dm6]	T	G	5.412e^-4	0.938	INTRON CadN2
3R	12602752	3R_12602752_SNP [dm3] 3R_16777030_SNP [dm6]	T	G	5.415e^-4	0.938	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	15269112	X_15269112_SNP [dm3] X_15375079_SNP [dm6]	A	T	5.419e^-4	0.938	INTRON acj6	TF binding site BDTNP1_TFBS_dl
3R	16856081	3R_16856081_SNP [dm3] 3R_21030359_SNP [dm6]	A	G	5.423e^-4	0.938	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2829423	3L_2829423_SNP [dm3] 3L_2829423_SNP [dm6]	A	T	5.429e^-4	0.938	INTRON CG43444
2L	9089922	2L_9089922_SNP [dm3] 2L_9089922_SNP [dm6]	T	A	5.434e^-4	0.938	DOWNSTREAM Toll-4 INTERGENIC
2L	18099929	2L_18099929_SNP [dm3] 2L_18099929_SNP [dm6]	T	C	5.438e^-4	0.938	INTERGENIC
2L	22032352	2L_22032352_SNP [dm3] 2L_22032352_SNP [dm6]	G	A	5.439e^-4	0.938	UPSTREAM CR45335 INTERGENIC
X	9910670	X_9910670_SNP [dm3] X_10016637_SNP [dm6]	T	C	5.455e^-4	0.938	UPSTREAM Cht6 INTERGENIC
3L	7488969	3L_7488969_SNP [dm3] 3L_7495869_SNP [dm6]	A	T	5.458e^-4	0.938	INTRON Cyp4d8
2R	11068265	2R_11068265_SNP [dm3] 2R_15180760_SNP [dm6]	T	G	5.458e^-4	0.938	INTRON igl
3L	8559866	3L_8559866_SNP [dm3] 3L_8566766_SNP [dm6]	A	G	5.463e^-4	0.938	SYNONYMOUS_CODING rhea UTR_3_PRIME rhea	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13825327	3R_13825327_SNP [dm3] 3R_17999605_SNP [dm6]	T	A	5.464e^-4	0.938	INTRON cpo
3R	13825329	3R_13825329_SNP [dm3] 3R_17999607_SNP [dm6]	A	G	5.464e^-4	0.938	INTRON cpo
3R	13825330	3R_13825330_SNP [dm3] 3R_17999608_SNP [dm6]	T	G	5.464e^-4	0.938	INTRON cpo
3L	3316859	3L_3316859_SNP [dm3] 3L_3316859_SNP [dm6]	T	G	5.470e^-4	0.938	NON_SYNONYMOUS_CODING Drsl5 DOWNSTREAM Drsl4
3R	16138756	3R_16138756_SNP [dm3] 3R_20313034_SNP [dm6]	T	C	5.478e^-4	0.938	INTRON CG42668
3R	11815762	3R_11815762_SNP [dm3] 3R_15990040_SNP [dm6]	A	G	5.485e^-4	0.938	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7102691	2R_7102691_SNP [dm3] 2R_11215186_SNP [dm6]	T	G	5.489e^-4	0.938	NON_SYNONYMOUS_CODING shn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	6995162	2R_6995162_SNP [dm3] 2R_11107657_SNP [dm6]	T	A	5.493e^-4	0.938	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	2527505	X_2527505_SNP [dm3] X_2633472_SNP [dm6]	T	G	5.497e^-4	0.938	UTR_3_PRIME PI4KIIIalpha UPSTREAM sgg DOWNSTREAM PI4KIIIalpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	4659818	3L_4659818_SNP [dm3] 3L_4659818_SNP [dm6]	T	C	5.502e^-4	0.938	SYNONYMOUS_CODING axo
2R	14769613	2R_14769613_SNP [dm3] 2R_18882108_SNP [dm6]	T	C	5.507e^-4	0.938	INTRON sano
2L	15602978	2L_15602978_SNP [dm3] 2L_15602978_SNP [dm6]	T	G	5.509e^-4	0.938	INTERGENIC
3R	25053227	3R_25053227_SNP [dm3] 3R_29227505_SNP [dm6]	C	G	5.526e^-4	0.938	NON_SYNONYMOUS_CODING CG14507	TF binding site mE1_TFBS_chinmo
3L	4966815	3L_4966815_DEL [dm3] 3L_4966815_DEL [dm6]	AGCGTAA	A	5.529e^-4	0.938	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4966862	3L_4966862_SNP [dm3] 3L_4966862_SNP [dm6]	A	T	5.529e^-4	0.938	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25942816	3R_25942816_DEL [dm3] 3R_30117094_DEL [dm6]	TAAGG	T	5.535e^-4	0.938	INTRON sima
2R	13772545	2R_13772545_SNP [dm3] 2R_17885040_SNP [dm6]	A	T	5.552e^-4	0.938	INTRON Elk

By genomic position
Variant impact
Gene name

mn_Glycogen phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results