DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.739e^-6)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2917 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	19623528	3R_19623528_SNP [dm3] 3R_23797806_SNP [dm6]	A	G	5.491e^-8	0.062	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19623540	3R_19623540_SNP [dm3] 3R_23797818_SNP [dm6]	T	C	9.802e^-8	0.062	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19623567	3R_19623567_SNP [dm3] 3R_23797845_SNP [dm6]	C	T	9.993e^-8	0.062	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	19614616	3R_19614616_SNP [dm3] 3R_23788894_SNP [dm6]	A	G	1.851e^-7	0.087	INTRON mbc
3R	18326855	3R_18326855_SNP [dm3] 3R_22501133_SNP [dm6]	C	T	8.145e^-7	0.305	INTRON Octbeta1R	regulatory region REDfly_CRMs
3R	19119304	3R_19119304_SNP [dm3] 3R_23293582_SNP [dm6]	A	G	1.956e^-6	0.432	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19813563	3R_19813563_SNP [dm3] 3R_23987841_SNP [dm6]	T	C	1.969e^-6	0.432	SYNONYMOUS_CODING CG5902 DOWNSTREAM CG13604	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	19813677	3R_19813677_SNP [dm3] 3R_23987955_SNP [dm6]	G	A	2.172e^-6	0.432	SYNONYMOUS_CODING CG5902 DOWNSTREAM CG13604	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25802827	3R_25802827_SNP [dm3] 3R_29977105_SNP [dm6]	G	A	2.409e^-6	0.432	INTERGENIC
3R	26811121	3R_26811121_SNP [dm3] 3R_30985399_SNP [dm6]	C	T	2.477e^-6	0.432	INTRON 5-HT7
3R	19119299	3R_19119299_DEL [dm3] 3R_23293577_DEL [dm6]	TG	T	2.988e^-6	0.432	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19119311	3R_19119311_SNP [dm3] 3R_23293589_SNP [dm6]	A	G	2.988e^-6	0.432	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19884482	3R_19884482_SNP [dm3] 3R_24058760_SNP [dm6]	G	T	3.112e^-6	0.432	SYNONYMOUS_CODING SMC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	25802858	3R_25802858_SNP [dm3] 3R_29977136_SNP [dm6]	T	G	3.254e^-6	0.432	INTERGENIC
3R	26658588	3R_26658588_SNP [dm3] 3R_30832866_SNP [dm6]	C	T	3.485e^-6	0.432	INTRON CG15544
3R	25802860	3R_25802860_SNP [dm3] 3R_29977138_SNP [dm6]	G	A	3.748e^-6	0.432	INTERGENIC
3R	26580470	3R_26580470_SNP [dm3] 3R_30754748_SNP [dm6]	A	T	4.442e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	18914854	3R_18914854_SNP [dm3] 3R_23089132_SNP [dm6]	A	T	4.787e^-6	0.432	INTRON CG13830
3R	20761418	3R_20761418_SNP [dm3] 3R_24935696_SNP [dm6]	G	A	4.855e^-6	0.432	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19884571	3R_19884571_SNP [dm3] 3R_24058849_SNP [dm6]	A	C	5.095e^-6	0.432	SPLICE_SITE_REGION SMC1 INTRON SMC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	18396413	3R_18396413_SNP [dm3] 3R_22570691_SNP [dm6]	G	A	5.236e^-6	0.432	INTRON CG33110
3R	22441304	3R_22441304_DEL [dm3] 3R_26615582_DEL [dm6]	CC	C	5.435e^-6	0.432	INTERGENIC
2R	11751600	2R_11751600_SNP [dm3] 2R_15864095_SNP [dm6]	G	C	5.673e^-6	0.432	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24027117	3R_24027117_SNP [dm3] 3R_28201395_SNP [dm6]	T	G	5.812e^-6	0.432	INTRON CG34354
2L	3844629	2L_3844629_SNP [dm3] 2L_3844629_SNP [dm6]	G	T	5.974e^-6	0.432	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	22441521	3R_22441521_SNP [dm3] 3R_26615799_SNP [dm6]	A	C	6.291e^-6	0.432	INTERGENIC
3R	19883967	3R_19883967_SNP [dm3] 3R_24058245_SNP [dm6]	T	A	6.717e^-6	0.432	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	19884743	3R_19884743_SNP [dm3] 3R_24059021_SNP [dm6]	A	G	6.837e^-6	0.432	INTRON SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19884763	3R_19884763_SNP [dm3] 3R_24059041_SNP [dm6]	G	A	6.837e^-6	0.432	INTRON SMC1	TF binding site mE1_TFBS_HSA
2L	19368739	2L_19368739_INS [dm3] 2L_19368739_INS [dm6]	T	TATGT	8.104e^-6	0.432	INTERGENIC
3R	19884814	3R_19884814_SNP [dm3] 3R_24059092_SNP [dm6]	A	C	8.183e^-6	0.432	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_HSA
2L	14432015	2L_14432015_SNP [dm3] 2L_14432015_SNP [dm6]	G	A	8.491e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	26725543	3R_26725543_INS [dm3] 3R_30899821_INS [dm6]	T	TT	8.568e^-6	0.432	DOWNSTREAM CG33483 INTRON Cyp4c3
2L	14431990	2L_14431990_SNP [dm3] 2L_14431990_SNP [dm6]	C	G	8.726e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
2L	14431979	2L_14431979_DEL [dm3] 2L_14431979_DEL [dm6]	GG	A	8.750e^-6	0.432	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	17549728	3R_17549728_SNP [dm3] 3R_21724006_SNP [dm6]	A	G	8.931e^-6	0.432	DOWNSTREAM CR44096 INTERGENIC
3R	18405650	3R_18405650_SNP [dm3] 3R_22579928_SNP [dm6]	A	G	8.975e^-6	0.432	UTR_3_PRIME CG33110 UPSTREAM CSN6	TF binding site mE1_TFBS_inv
3R	27069434	3R_27069434_DEL [dm3] 3R_31243712_DEL [dm6]	TCATCAGCATCAT...	T	9.162e^-6	0.432	INTRON qless
3R	19119293	3R_19119293_SNP [dm3] 3R_23293571_SNP [dm6]	G	A	9.402e^-6	0.432	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18914850	3R_18914850_SNP [dm3] 3R_23089128_SNP [dm6]	A	G	9.407e^-6	0.432	INTRON CG13830
3R	20798882	3R_20798882_SNP [dm3] 3R_24973160_SNP [dm6]	G	A	9.459e^-6	0.432	INTERGENIC
3R	26129371	3R_26129371_SNP [dm3] 3R_30303649_SNP [dm6]	G	T	1.022e^-5	0.447	INTRON hdc
2L	14431966	2L_14431966_SNP [dm3] 2L_14431966_SNP [dm6]	A	G	1.027e^-5	0.447	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18994484	3R_18994484_SNP [dm3] 3R_23168762_SNP [dm6]	G	A	1.104e^-5	0.449	UTR_5_PRIME Irk1 INTRON Irk1
3R	25951192	3R_25951192_SNP [dm3] 3R_30125470_SNP [dm6]	A	G	1.120e^-5	0.449	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17557203	3R_17557203_SNP [dm3] 3R_21731481_SNP [dm6]	C	T	1.128e^-5	0.449	INTERGENIC
3R	13905919	3R_13905919_SNP [dm3] 3R_18080197_SNP [dm6]	T	C	1.141e^-5	0.449	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24262548	3R_24262548_SNP [dm3] 3R_28436826_SNP [dm6]	G	A	1.164e^-5	0.449	INTRON beat-VI
2L	14432023	2L_14432023_SNP [dm3] 2L_14432023_SNP [dm6]	T	A	1.178e^-5	0.449	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	26658628	3R_26658628_SNP [dm3] 3R_30832906_SNP [dm6]	C	A	1.201e^-5	0.449	INTRON CG15544
2R	11751578	2R_11751578_SNP [dm3] 2R_15864073_SNP [dm6]	A	T	1.222e^-5	0.449	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	21939039	X_21939039_SNP [dm3] X_22537203_SNP [dm6]	T	C	1.437e^-5	0.492	DOWNSTREAM S6kII INTRON CG17600 & 1 other	TF binding site mE1_TFBS_cad
3R	26825101	3R_26825101_SNP [dm3] 3R_30999379_SNP [dm6]	G	T	1.481e^-5	0.492	INTRON 5-HT7
3R	20848857	3R_20848857_SNP [dm3] 3R_25023135_SNP [dm6]	A	T	1.481e^-5	0.492	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	19884065	3R_19884065_INS [dm3] 3R_24058343_INS [dm6]	A	AA	1.495e^-5	0.492	UTR_5_PRIME SMC1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	11496275	2L_11496275_SNP [dm3] 2L_11496275_SNP [dm6]	T	C	1.507e^-5	0.492	DOWNSTREAM CG6488 INTERGENIC
2L	14431988	2L_14431988_SNP [dm3] 2L_14431988_SNP [dm6]	C	T	1.508e^-5	0.492	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	26129375	3R_26129375_SNP [dm3] 3R_30303653_SNP [dm6]	A	T	1.523e^-5	0.492	INTRON hdc
3R	2805495	3R_2805495_SNP [dm3] 3R_6979773_SNP [dm6]	A	T	1.579e^-5	0.501	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2L	9921222	2L_9921222_SNP [dm3] 2L_9921222_SNP [dm6]	G	A	1.621e^-5	0.501	SYNONYMOUS_CODING CG4594 UPSTREAM CG4592
3R	25807439	3R_25807439_SNP [dm3] 3R_29981717_SNP [dm6]	T	A	1.631e^-5	0.501	INTERGENIC
3R	25951159	3R_25951159_SNP [dm3] 3R_30125437_SNP [dm6]	G	A	1.659e^-5	0.501	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	20848864	3R_20848864_SNP [dm3] 3R_25023142_SNP [dm6]	T	C	1.769e^-5	0.503	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	26657429	3R_26657429_SNP [dm3] 3R_30831707_SNP [dm6]	A	T	1.775e^-5	0.503	INTRON CG15544
X	14736675	X_14736675_INS [dm3] X_14842642_INS [dm6]	T	TT	1.844e^-5	0.503	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18262084	3R_18262084_SNP [dm3] 3R_22436362_SNP [dm6]	A	G	1.879e^-5	0.503	UPSTREAM CG13847 INTERGENIC
3R	26301707	3R_26301707_INS [dm3] 3R_30475985_INS [dm6]	C	CGC	1.889e^-5	0.503	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	21314945	3R_21314945_SNP [dm3] 3R_25489223_SNP [dm6]	G	T	1.892e^-5	0.503	INTRON Dhap-at
2L	2724565	2L_2724565_SNP [dm3] 2L_2724565_SNP [dm6]	G	T	1.904e^-5	0.503	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	20848825	3R_20848825_DEL [dm3] 3R_25023103_DEL [dm6]	GATAAAATAAAGGTTAGG...	G	1.974e^-5	0.503	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	20848849	3R_20848849_DEL [dm3] 3R_25023127_DEL [dm6]	ATTAAAG	GCGT	1.974e^-5	0.503	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	20848865	3R_20848865_SNP [dm3] 3R_25023143_SNP [dm6]	G	C	1.974e^-5	0.503	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	24957797	3R_24957797_SNP [dm3] 3R_29132075_SNP [dm6]	G	T	1.974e^-5	0.503	INTRON Vha100-1
3R	21250015	3R_21250015_SNP [dm3] 3R_25424293_SNP [dm6]	C	A	1.994e^-5	0.503	INTRON Fur1
3R	13906095	3R_13906095_SNP [dm3] 3R_18080373_SNP [dm6]	T	C	2.012e^-5	0.503	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25951166	3R_25951166_SNP [dm3] 3R_30125444_SNP [dm6]	G	A	2.069e^-5	0.509	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	17553147	3R_17553147_SNP [dm3] 3R_21727425_SNP [dm6]	A	T	2.090e^-5	0.509	INTERGENIC
2L	4313876	2L_4313876_SNP [dm3] 2L_4313876_SNP [dm6]	A	G	2.146e^-5	0.512	INTRON tutl
3R	26812324	3R_26812324_SNP [dm3] 3R_30986602_SNP [dm6]	C	T	2.177e^-5	0.512	INTRON 5-HT7
3R	25951748	3R_25951748_SNP [dm3] 3R_30126026_SNP [dm6]	G	T	2.207e^-5	0.512	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	17657043	3R_17657043_SNP [dm3] 3R_21831321_SNP [dm6]	C	A	2.220e^-5	0.512	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	20848882	3R_20848882_SNP [dm3] 3R_25023160_SNP [dm6]	A	C	2.257e^-5	0.512	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
2R	15434971	2R_15434971_SNP [dm3] 2R_19547466_SNP [dm6]	C	T	2.322e^-5	0.512	UPSTREAM sm INTRON sm
3R	20848822	3R_20848822_SNP [dm3] 3R_25023100_SNP [dm6]	T	C	2.325e^-5	0.512	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	20848824	3R_20848824_SNP [dm3] 3R_25023102_SNP [dm6]	T	A	2.325e^-5	0.512	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	24988530	3R_24988530_SNP [dm3] 3R_29162808_SNP [dm6]	C	A	2.416e^-5	0.523	SYNONYMOUS_CODING CG11897
3R	19199842	3R_19199842_SNP [dm3] 3R_23374120_SNP [dm6]	A	G	2.436e^-5	0.523	UTR_3_PRIME CG42828 DOWNSTREAM CG42827
3R	25312248	3R_25312248_SNP [dm3] 3R_29486526_SNP [dm6]	C	A	2.464e^-5	0.523	UTR_3_PRIME Ptp99A DOWNSTREAM CG2321 INTRON CG2321
3R	26580589	3R_26580589_SNP [dm3] 3R_30754867_SNP [dm6]	G	A	2.487e^-5	0.523	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2R	11119340	2R_11119340_SNP [dm3] 2R_15231835_SNP [dm6]	C	A	2.523e^-5	0.525	INTRON Fs EXON CR44370	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	12099938	3R_12099938_SNP [dm3] 3R_16274216_SNP [dm6]	C	T	2.582e^-5	0.526	UTR_5_PRIME gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	23157209	3R_23157209_SNP [dm3] 3R_27331487_SNP [dm6]	T	A	2.596e^-5	0.526	UPSTREAM CG3330 INTERGENIC
3R	25951790	3R_25951790_SNP [dm3] 3R_30126068_SNP [dm6]	A	T	2.616e^-5	0.526	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
3R	11847305	3R_11847305_SNP [dm3] 3R_16021583_SNP [dm6]	C	T	2.642e^-5	0.526	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Stat92E
3R	14283901	3R_14283901_DEL [dm3] 3R_18458179_DEL [dm6]	GTTAT	G	2.680e^-5	0.526	INTRON fru
3R	20848817	3R_20848817_SNP [dm3] 3R_25023095_SNP [dm6]	A	C	2.695e^-5	0.526	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
X	19041649	X_19041649_SNP [dm3] X_19147616_SNP [dm6]	C	A	2.723e^-5	0.526	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14736740	X_14736740_DEL [dm3] X_14842707_DEL [dm6]	TTT	T	2.858e^-5	0.546	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site mE1_TFBS_HSA
X	19041623	X_19041623_DEL [dm3] X_19147590_DEL [dm6]	CTTATT	C	2.903e^-5	0.547	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17553132	3R_17553132_SNP [dm3] 3R_21727410_SNP [dm6]	G	A	2.937e^-5	0.547	INTERGENIC
3R	25951255	3R_25951255_DEL [dm3] 3R_30125533_DEL [dm6]	ACGCGTGAAACGTATTA...	A	2.950e^-5	0.547	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	26861298	3R_26861298_SNP [dm3] 3R_31035576_SNP [dm6]	A	T	3.056e^-5	0.547	NON_SYNONYMOUS_CODING CG33773
X	14736696	X_14736696_DEL [dm3] X_14842663_DEL [dm6]	AA	A	3.080e^-5	0.547	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20848812	3R_20848812_SNP [dm3] 3R_25023090_SNP [dm6]	G	T	3.081e^-5	0.547	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	10609099	3R_10609099_SNP [dm3] 3R_14783377_SNP [dm6]	A	T	3.132e^-5	0.547	INTRON jvl
3R	26453582	3R_26453582_SNP [dm3] 3R_30627860_SNP [dm6]	T	C	3.152e^-5	0.547	SYNONYMOUS_CODING CG2267
2L	9921324	2L_9921324_SNP [dm3] 2L_9921324_SNP [dm6]	C	A	3.171e^-5	0.547	UTR_3_PRIME CG4594 UPSTREAM CG4592	TF binding site mE1_TFBS_inv
X	14736713	X_14736713_SNP [dm3] X_14842680_SNP [dm6]	A	T	3.176e^-5	0.547	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site mE1_TFBS_HSA
2L	14431995	2L_14431995_SNP [dm3] 2L_14431995_SNP [dm6]	C	T	3.191e^-5	0.547	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	19814972	3R_19814972_SNP [dm3] 3R_23989250_SNP [dm6]	A	T	3.234e^-5	0.547	UTR_3_PRIME CG13604 DOWNSTREAM CG5902
2L	9921065	2L_9921065_SNP [dm3] 2L_9921065_SNP [dm6]	T	C	3.265e^-5	0.547	NON_SYNONYMOUS_CODING CG4594 UPSTREAM CG4592 DOWNSTREAM CG4598
3R	19884898	3R_19884898_SNP [dm3] 3R_24059176_SNP [dm6]	A	G	3.278e^-5	0.547	SYNONYMOUS_CODING SMC1
3R	24204039	3R_24204039_SNP [dm3] 3R_28378317_SNP [dm6]	G	A	3.301e^-5	0.547	INTERGENIC
3R	20849080	3R_20849080_SNP [dm3] 3R_25023358_SNP [dm6]	A	T	3.372e^-5	0.554	UTR_5_PRIME beta4GalT7 DOWNSTREAM tnc
3R	17816844	3R_17816844_SNP [dm3] 3R_21991122_SNP [dm6]	G	A	3.402e^-5	0.554	INTRON Eip93F
X	14736719	X_14736719_SNP [dm3] X_14842686_SNP [dm6]	T	A	3.472e^-5	0.561	UTR_3_PRIME CG12539 INTRON Flo2	TF binding site mE1_TFBS_HSA
3R	27025022	3R_27025022_SNP [dm3] 3R_31199300_SNP [dm6]	C	A	3.507e^-5	0.561	INTRON CG1544	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26799330	3R_26799330_SNP [dm3] 3R_30973608_SNP [dm6]	T	G	3.589e^-5	0.561	INTRON 5-HT7
3R	10957137	3R_10957137_SNP [dm3] 3R_15131415_SNP [dm6]	C	G	3.612e^-5	0.561	UPSTREAM mir-2493 INTRON CG42788	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15117608	3R_15117608_SNP [dm3] 3R_19291886_SNP [dm6]	G	A	3.686e^-5	0.561	INTERGENIC
3R	13905811	3R_13905811_SNP [dm3] 3R_18080089_SNP [dm6]	T	A	3.712e^-5	0.561	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13905814	3R_13905814_DEL [dm3] 3R_18080092_DEL [dm6]	AC	A	3.712e^-5	0.561	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	13905819	3R_13905819_INS [dm3] 3R_18080097_INS [dm6]	A	ATCTT	3.712e^-5	0.561	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	8808787	3L_8808787_SNP [dm3] 3L_8815687_SNP [dm6]	C	T	3.752e^-5	0.561	INTERGENIC
2L	17693993	2L_17693993_SNP [dm3] 2L_17693993_SNP [dm6]	A	C	3.759e^-5	0.561	INTRON CadN
3R	20798771	3R_20798771_SNP [dm3] 3R_24973049_SNP [dm6]	T	A	3.770e^-5	0.561	INTERGENIC
2L	15373706	2L_15373706_SNP [dm3] 2L_15373706_SNP [dm6]	G	A	3.930e^-5	0.576	INTERGENIC
3R	19884720	3R_19884720_SNP [dm3] 3R_24058998_SNP [dm6]	T	A	3.933e^-5	0.576	SYNONYMOUS_CODING SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	15975684	X_15975684_SNP [dm3] X_16081651_SNP [dm6]	A	G	4.014e^-5	0.581	UPSTREAM mir-4958 INTRON Tob
3R	20848804	3R_20848804_SNP [dm3] 3R_25023082_SNP [dm6]	T	C	4.034e^-5	0.581	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3R	19884761	3R_19884761_SNP [dm3] 3R_24059039_SNP [dm6]	T	C	4.148e^-5	0.59	INTRON SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11752684	2R_11752684_SNP [dm3] 2R_15865179_SNP [dm6]	G	T	4.178e^-5	0.59	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	25802778	3R_25802778_SNP [dm3] 3R_29977056_SNP [dm6]	A	C	4.208e^-5	0.59	INTERGENIC
2L	3259549	2L_3259549_SNP [dm3] 2L_3259549_SNP [dm6]	T	C	4.222e^-5	0.59	INTERGENIC
3R	19815170	3R_19815170_SNP [dm3] 3R_23989448_SNP [dm6]	G	C	4.355e^-5	0.604	SYNONYMOUS_CODING CG13604 UTR_3_PRIME CG13604 DOWNSTREAM CG5902
2L	11124412	2L_11124412_SNP [dm3] 2L_11124412_SNP [dm6]	T	C	4.412e^-5	0.606	SYNONYMOUS_CODING Nup160 UPSTREAM Csl4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	26825136	3R_26825136_SNP [dm3] 3R_30999414_SNP [dm6]	A	T	4.640e^-5	0.606	INTRON 5-HT7
3R	17500667	3R_17500667_SNP [dm3] 3R_21674945_SNP [dm6]	T	A	4.642e^-5	0.606	INTRON CG31176
2L	9921318	2L_9921318_SNP [dm3] 2L_9921318_SNP [dm6]	A	G	4.653e^-5	0.606	SYNONYMOUS_CODING CG4594 UPSTREAM CG4592	TF binding site mE1_TFBS_inv
3R	19884790	3R_19884790_SNP [dm3] 3R_24059068_SNP [dm6]	C	T	4.680e^-5	0.606	SYNONYMOUS_CODING SMC1	TF binding site mE1_TFBS_HSA
X	4914754	X_4914754_SNP [dm3] X_5020721_SNP [dm6]	C	T	4.694e^-5	0.606	INTRON CR44833	regulatory region REDfly_CRMs
2L	11028944	2L_11028944_SNP [dm3] 2L_11028944_SNP [dm6]	A	T	4.699e^-5	0.606	UTR_3_PRIME Samuel INTRON Samuel	TF binding site mE1_TFBS_cad
2L	9921262	2L_9921262_SNP [dm3] 2L_9921262_SNP [dm6]	G	A	4.721e^-5	0.606	NON_SYNONYMOUS_CODING CG4594 UPSTREAM CG4592	TF binding site mE1_TFBS_inv
3R	17661232	3R_17661232_SNP [dm3] 3R_21835510_SNP [dm6]	G	A	4.811e^-5	0.606	INTERGENIC
3L	14359076	3L_14359076_SNP [dm3] 3L_14365976_SNP [dm6]	C	T	4.827e^-5	0.606	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	2805458	3R_2805458_SNP [dm3] 3R_6979736_SNP [dm6]	C	T	4.828e^-5	0.606	INTRON Antp	TF binding site BDTNP1_TFBS_dl
2R	8685290	2R_8685290_DEL [dm3] 2R_12797785_DEL [dm6]	AA	A	4.843e^-5	0.606	INTRON sca EXON CR45137
2R	8269062	2R_8269062_SNP [dm3] 2R_12381557_SNP [dm6]	G	A	4.871e^-5	0.606	INTERGENIC
3R	17922243	3R_17922243_INS [dm3] 3R_22096521_INS [dm6]	T	TCTTT	4.881e^-5	0.606	INTRON CG5778
3R	26721211	3R_26721211_DEL [dm3] 3R_30895489_DEL [dm6]	CC	C	4.890e^-5	0.606	INTRON Cyp4c3
3R	19884946	3R_19884946_SNP [dm3] 3R_24059224_SNP [dm6]	T	C	4.919e^-5	0.606	SYNONYMOUS_CODING SMC1
3R	26619075	3R_26619075_SNP [dm3] 3R_30793353_SNP [dm6]	C	T	4.969e^-5	0.606	SYNONYMOUS_CODING wts	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
2R	11751560	2R_11751560_SNP [dm3] 2R_15864055_SNP [dm6]	A	T	4.983e^-5	0.606	DOWNSTREAM Rif1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	18173440	3R_18173440_SNP [dm3] 3R_22347718_SNP [dm6]	T	C	4.996e^-5	0.606	INTERGENIC
2L	15996729	2L_15996729_SNP [dm3] 2L_15996729_SNP [dm6]	A	T	5.017e^-5	0.606	INTERGENIC
3R	18173981	3R_18173981_SNP [dm3] 3R_22348259_SNP [dm6]	C	A	5.073e^-5	0.609	INTERGENIC
2L	2724758	2L_2724758_SNP [dm3] 2L_2724758_SNP [dm6]	C	T	5.225e^-5	0.617	UPSTREAM CG31689 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14236352	2L_14236352_SNP [dm3] 2L_14236352_SNP [dm6]	A	C	5.245e^-5	0.617	DOWNSTREAM CR44728 INTERGENIC
3R	23216383	3R_23216383_SNP [dm3] 3R_27390661_SNP [dm6]	A	T	5.295e^-5	0.617	INTRON side
3R	18422730	3R_18422730_SNP [dm3] 3R_22597008_SNP [dm6]	T	A	5.318e^-5	0.617	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15063719	3R_15063719_SNP [dm3] 3R_19237997_SNP [dm6]	G	A	5.324e^-5	0.617	SYNONYMOUS_CODING unc79	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19832511	3R_19832511_SNP [dm3] 3R_24006789_SNP [dm6]	A	T	5.334e^-5	0.617	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25059670	3R_25059670_SNP [dm3] 3R_29233948_SNP [dm6]	C	T	5.394e^-5	0.62	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad
3R	15117638	3R_15117638_SNP [dm3] 3R_19291916_SNP [dm6]	G	A	5.574e^-5	0.626	INTERGENIC
X	18639249	X_18639249_SNP [dm3] X_18745216_SNP [dm6]	C	T	5.574e^-5	0.626	INTERGENIC
2R	11740837	2R_11740837_SNP [dm3] 2R_15853332_SNP [dm6]	C	A	5.595e^-5	0.626	UTR_3_PRIME tun	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	19884753	3R_19884753_SNP [dm3] 3R_24059031_SNP [dm6]	C	G	5.616e^-5	0.626	INTRON SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10609532	3R_10609532_SNP [dm3] 3R_14783810_SNP [dm6]	G	T	5.734e^-5	0.626	INTRON jvl
3R	20848861	3R_20848861_SNP [dm3] 3R_25023139_SNP [dm6]	G	C	5.762e^-5	0.626	UPSTREAM beta4GalT7 DOWNSTREAM tnc INTERGENIC
3L	14358902	3L_14358902_SNP [dm3] 3L_14365802_SNP [dm6]	T	G	5.808e^-5	0.626	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26812241	3R_26812241_SNP [dm3] 3R_30986519_SNP [dm6]	C	T	5.831e^-5	0.626	INTRON 5-HT7
3R	23609136	3R_23609136_SNP [dm3] 3R_27783414_SNP [dm6]	A	T	5.857e^-5	0.626	INTRON CG34353
3R	23609155	3R_23609155_SNP [dm3] 3R_27783433_SNP [dm6]	T	C	5.857e^-5	0.626	INTRON CG34353
3R	26580374	3R_26580374_SNP [dm3] 3R_30754652_SNP [dm6]	C	A	5.863e^-5	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	14744219	2L_14744219_SNP [dm3] 2L_14744219_SNP [dm6]	G	A	5.893e^-5	0.626	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
2L	14747303	2L_14747303_SNP [dm3] 2L_14747303_SNP [dm6]	C	G	5.893e^-5	0.626	UPSTREAM CR45458 INTERGENIC
3R	26750786	3R_26750786_SNP [dm3] 3R_30925064_SNP [dm6]	C	A	5.931e^-5	0.626	INTRON Ptx1
3R	26810898	3R_26810898_SNP [dm3] 3R_30985176_SNP [dm6]	G	A	5.945e^-5	0.626	INTRON 5-HT7
3L	14358984	3L_14358984_DEL [dm3] 3L_14365884_DEL [dm6]	AA	T	5.978e^-5	0.626	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9921162	2L_9921162_SNP [dm3] 2L_9921162_SNP [dm6]	C	T	6.153e^-5	0.639	SYNONYMOUS_CODING CG4594 UPSTREAM CG4592
3R	19832624	3R_19832624_INS [dm3] 3R_24006902_INS [dm6]	T	TT	6.193e^-5	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	19614064	3R_19614064_DEL [dm3] 3R_23788342_DEL [dm6]	AA	A	6.303e^-5	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	3244201	2L_3244201_SNP [dm3] 2L_3244201_SNP [dm6]	C	G	6.306e^-5	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8618320	2R_8618320_SNP [dm3] 2R_12730815_SNP [dm6]	T	C	6.315e^-5	0.639	INTRON CG42663	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	18795888	2R_18795888_DEL [dm3] 2R_22908365_DEL [dm6]	GCTCTTTTTAGCTT...	G	6.456e^-5	0.639	INTRON nahoda
3R	1778409	3R_1778409_SNP [dm3] 3R_5952687_SNP [dm6]	G	C	6.494e^-5	0.639	INTRON CG34113
3R	20351019	3R_20351019_SNP [dm3] 3R_24525297_SNP [dm6]	G	T	6.510e^-5	0.639	INTRON CG13618
3R	26983956	3R_26983956_INS [dm3] 3R_31158234_INS [dm6]	T	TT	6.518e^-5	0.639	SPLICE_SITE_REGION Gycbeta100B UTR_3_PRIME stops INTRON Gycbeta100B	TF binding site mE1_TFBS_chinmo
3R	19884754	3R_19884754_SNP [dm3] 3R_24059032_SNP [dm6]	G	T	6.545e^-5	0.639	INTRON SMC1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	22760185	3R_22760185_SNP [dm3] 3R_26934463_SNP [dm6]	A	C	6.584e^-5	0.639	INTRON sda
2R	11736242	2R_11736242_SNP [dm3] 2R_15848737_SNP [dm6]	A	T	6.641e^-5	0.639	UTR_5_PRIME tun
2R	6631626	2R_6631626_SNP [dm3] 2R_10744121_SNP [dm6]	T	G	6.655e^-5	0.639	INTRON CG33144
X	17388584	X_17388584_SNP [dm3] X_17494551_SNP [dm6]	T	C	6.670e^-5	0.639	INTRON CG43658
3R	26026024	3R_26026024_SNP [dm3] 3R_30200302_SNP [dm6]	T	C	6.758e^-5	0.639	INTRON CG9743	TF binding site mE1_TFBS_chinmo
3R	26578346	3R_26578346_SNP [dm3] 3R_30752624_SNP [dm6]	T	A	6.789e^-5	0.639	INTERGENIC
3R	26557285	3R_26557285_SNP [dm3] 3R_30731563_SNP [dm6]	G	A	6.893e^-5	0.639	UPSTREAM CG11313 INTERGENIC
2L	7263760	2L_7263760_SNP [dm3] 2L_7263760_SNP [dm6]	T	C	6.969e^-5	0.639	INTRON Wnt4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7121987	3R_7121987_INS [dm3] 3R_11296265_INS [dm6]	G	GG	7.002e^-5	0.639	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25691641	3R_25691641_SNP [dm3] 3R_29865919_SNP [dm6]	G	C	7.060e^-5	0.639	UPSTREAM Zip99C INTRON Zip99C
2R	8291148	2R_8291148_SNP [dm3] 2R_12403643_SNP [dm6]	C	T	7.061e^-5	0.639	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3R	22441610	3R_22441610_SNP [dm3] 3R_26615888_SNP [dm6]	A	G	7.062e^-5	0.639	INTERGENIC
2R	18841344	2R_18841344_SNP [dm3] 2R_22953821_SNP [dm6]	T	A	7.224e^-5	0.639	UPSTREAM CR32835 INTERGENIC
3L	11785639	3L_11785639_SNP [dm3] 3L_11792539_SNP [dm6]	C	T	7.249e^-5	0.639	SYNONYMOUS_CODING CG5964 UPSTREAM CG10907	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18173982	3R_18173982_SNP [dm3] 3R_22348260_SNP [dm6]	A	G	7.254e^-5	0.639	INTERGENIC
3R	17657027	3R_17657027_DEL [dm3] 3R_21831305_DEL [dm6]	GCTGGGGTATTGG...	G	7.286e^-5	0.639	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18499062	3R_18499062_SNP [dm3] 3R_22673340_SNP [dm6]	G	C	7.317e^-5	0.639	UPSTREAM CG45058 INTRON CG45058	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14375390	2L_14375390_SNP [dm3] 2L_14375390_SNP [dm6]	A	T	7.333e^-5	0.639	INTERGENIC
3R	13905822	3R_13905822_DEL [dm3] 3R_18080100_DEL [dm6]	CTATCCTAGC	C	7.453e^-5	0.639	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	25237202	3R_25237202_SNP [dm3] 3R_29411480_SNP [dm6]	C	T	7.510e^-5	0.639	INTRON Ptp99A
3R	1778434	3R_1778434_SNP [dm3] 3R_5952712_SNP [dm6]	A	G	7.534e^-5	0.639	INTRON CG34113
3R	26301587	3R_26301587_SNP [dm3] 3R_30475865_SNP [dm6]	G	A	7.575e^-5	0.639	UPSTREAM spdo INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	18639242	X_18639242_SNP [dm3] X_18745209_SNP [dm6]	G	C	7.642e^-5	0.639	INTERGENIC
3R	10606017	3R_10606017_SNP [dm3] 3R_14780295_SNP [dm6]	G	A	7.648e^-5	0.639	INTRON jvl
3R	24117008	3R_24117008_SNP [dm3] 3R_28291286_SNP [dm6]	T	C	7.704e^-5	0.639	UPSTREAM Mst98Ca INTERGENIC
3R	23806624	3R_23806624_SNP [dm3] 3R_27980902_SNP [dm6]	C	G	7.829e^-5	0.639	INTRON betaTub97EF
2R	13806660	2R_13806660_SNP [dm3] 2R_17919155_SNP [dm6]	G	A	7.846e^-5	0.639	INTRON Elk
3R	26588495	3R_26588495_INS [dm3] 3R_30762773_INS [dm6]	ATTA	TCGAC	7.868e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3L	13063911	3L_13063911_SNP [dm3] 3L_13070811_SNP [dm6]	G	T	7.922e^-5	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14998348	2L_14998348_SNP [dm3] 2L_14998348_SNP [dm6]	C	T	8.076e^-5	0.639	UPSTREAM mol INTERGENIC
3R	26663144	3R_26663144_SNP [dm3] 3R_30837422_SNP [dm6]	T	C	8.167e^-5	0.639	INTRON CG15544
3R	26406199	3R_26406199_SNP [dm3] 3R_30580477_SNP [dm6]	A	T	8.225e^-5	0.639	SYNONYMOUS_CODING CG9702
3R	25054282	3R_25054282_SNP [dm3] 3R_29228560_SNP [dm6]	C	G	8.286e^-5	0.639	UPSTREAM CG14507 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1692241	3L_1692241_SNP [dm3] 3L_1692241_SNP [dm6]	T	C	8.298e^-5	0.639	INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26515512	3R_26515512_SNP [dm3] 3R_30689790_SNP [dm6]	A	G	8.419e^-5	0.639	UPSTREAM Spn100A INTERGENIC
3R	17940731	3R_17940731_SNP [dm3] 3R_22115009_SNP [dm6]	T	C	8.437e^-5	0.639	NON_SYNONYMOUS_CODING Ir94a DOWNSTREAM Ir94b
3R	18933318	3R_18933318_SNP [dm3] 3R_23107596_SNP [dm6]	T	G	8.463e^-5	0.639	INTRON CG13830
3L	420454	3L_420454_SNP [dm3] 3L_420454_SNP [dm6]	A	T	8.505e^-5	0.639	INTERGENIC
3R	26410428	3R_26410428_SNP [dm3] 3R_30584706_SNP [dm6]	T	G	8.506e^-5	0.639	NON_SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	14358899	3L_14358899_DEL [dm3] 3L_14365799_DEL [dm6]	AA	A	8.606e^-5	0.639	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	18422716	3R_18422716_SNP [dm3] 3R_22596994_SNP [dm6]	G	A	8.619e^-5	0.639	INTRON Efa6	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10334970	3R_10334970_SNP [dm3] 3R_14509248_SNP [dm6]	A	G	8.639e^-5	0.639	UTR_3_PRIME HtrA2 DOWNSTREAM HtrA2 & 1 other	TF binding site mE1_TFBS_inv
3R	21479796	3R_21479796_SNP [dm3] 3R_25654074_SNP [dm6]	G	T	8.648e^-5	0.639	NON_SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
2L	14744239	2L_14744239_SNP [dm3] 2L_14744239_SNP [dm6]	T	C	8.661e^-5	0.639	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
3R	15896325	3R_15896325_SNP [dm3] 3R_20070603_SNP [dm6]	T	C	8.722e^-5	0.639	INTERGENIC
3R	23739239	3R_23739239_SNP [dm3] 3R_27913517_SNP [dm6]	T	C	8.843e^-5	0.639	SYNONYMOUS_CODING hanabi DOWNSTREAM CG5003
3R	15331136	3R_15331136_SNP [dm3] 3R_19505414_SNP [dm6]	C	A	8.881e^-5	0.639	INTRON Dys	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	19687985	3R_19687985_SNP [dm3] 3R_23862263_SNP [dm6]	G	A	8.889e^-5	0.639	SYNONYMOUS_CODING Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	17661254	3R_17661254_SNP [dm3] 3R_21835532_SNP [dm6]	G	C	8.892e^-5	0.639	INTERGENIC
3R	22607815	3R_22607815_INS [dm3] 3R_26782093_INS [dm6]	G	GCC	8.943e^-5	0.639	INTERGENIC
2R	12680214	2R_12680214_SNP [dm3] 2R_16792709_SNP [dm6]	G	A	9.051e^-5	0.639	NON_SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
3R	12494560	3R_12494560_SNP [dm3] 3R_16668838_SNP [dm6]	G	A	9.109e^-5	0.639	INTRON Ubx	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25050957	3R_25050957_SNP [dm3] 3R_29225235_SNP [dm6]	T	G	9.118e^-5	0.639	NON_SYNONYMOUS_CODING Brd8 DOWNSTREAM CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8826858	2R_8826858_SNP [dm3] 2R_12939353_SNP [dm6]	G	A	9.119e^-5	0.639	NON_SYNONYMOUS_CODING Sans DOWNSTREAM Mdr49	TF binding site mE1_TFBS_chinmo
3R	21250308	3R_21250308_SNP [dm3] 3R_25424586_SNP [dm6]	T	G	9.134e^-5	0.639	INTRON Fur1
3R	20676742	3R_20676742_SNP [dm3] 3R_24851020_SNP [dm6]	C	G	9.143e^-5	0.639	SYNONYMOUS_CODING CG7006 UPSTREAM nct DOWNSTREAM Esp	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	17263227	3R_17263227_SNP [dm3] 3R_21437505_SNP [dm6]	G	A	9.159e^-5	0.639	UPSTREAM CR44089 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	17263330	3R_17263330_SNP [dm3] 3R_21437608_SNP [dm6]	C	T	9.159e^-5	0.639	UPSTREAM CR44089 INTERGENIC
3L	14358905	3L_14358905_SNP [dm3] 3L_14365805_SNP [dm6]	A	G	9.297e^-5	0.639	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	19118553	3R_19118553_SNP [dm3] 3R_23292831_SNP [dm6]	G	A	9.341e^-5	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	14364828	3R_14364828_INS [dm3] 3R_18539106_INS [dm6]	A	ACATA	9.396e^-5	0.639	INTRON fru
2L	18604806	2L_18604806_SNP [dm3] 2L_18604806_SNP [dm6]	C	T	9.546e^-5	0.639	NON_SYNONYMOUS_CODING CG10413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19118583	3R_19118583_SNP [dm3] 3R_23292861_SNP [dm6]	G	A	9.609e^-5	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	1775888	3R_1775888_SNP [dm3] 3R_5950166_SNP [dm6]	C	A	9.610e^-5	0.639	INTRON CG34113
3R	24654604	3R_24654604_SNP [dm3] 3R_28828882_SNP [dm6]	C	T	9.612e^-5	0.639	INTRON WASp
3R	24654620	3R_24654620_SNP [dm3] 3R_28828898_SNP [dm6]	C	T	9.612e^-5	0.639	INTRON WASp
3R	19815221	3R_19815221_SNP [dm3] 3R_23989499_SNP [dm6]	G	A	9.615e^-5	0.639	SYNONYMOUS_CODING CG13604 DOWNSTREAM CG5902
3L	19681196	3L_19681196_SNP [dm3] 3L_19688096_SNP [dm6]	T	C	9.636e^-5	0.639	UPSTREAM CG8765 INTRON Gbeta76C
X	16151461	X_16151461_SNP [dm3] X_16257428_SNP [dm6]	A	T	9.669e^-5	0.639	INTERGENIC
3R	19736071	3R_19736071_SNP [dm3] 3R_23910349_SNP [dm6]	A	T	9.672e^-5	0.639	INTRON sba
3R	19832568	3R_19832568_SNP [dm3] 3R_24006846_SNP [dm6]	T	A	9.716e^-5	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	21480001	3R_21480001_SNP [dm3] 3R_25654279_SNP [dm6]	T	A	9.809e^-5	0.639	NON_SYNONYMOUS_CODING Tnks UTR_3_PRIME Tnks	TF binding site mE1_TFBS_chinmo
2R	8269418	2R_8269418_SNP [dm3] 2R_12381913_SNP [dm6]	T	G	9.892e^-5	0.639	INTERGENIC
3L	3893224	3L_3893224_SNP [dm3] 3L_3893224_SNP [dm6]	T	C	9.967e^-5	0.639	INTRON Fie EXON snRNA:U11
3R	15969971	3R_15969971_SNP [dm3] 3R_20144249_SNP [dm6]	G	A	1.000e^-4	0.639	INTERGENIC
3R	12099967	3R_12099967_SNP [dm3] 3R_16274245_SNP [dm6]	A	G	1.005e^-4	0.639	UTR_5_PRIME gish INTRON gish	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	19884890	3R_19884890_SNP [dm3] 3R_24059168_SNP [dm6]	A	C	1.006e^-4	0.639	SYNONYMOUS_CODING SMC1
2R	13373281	2R_13373281_SNP [dm3] 2R_17485776_SNP [dm6]	T	C	1.014e^-4	0.639	UTR_5_PRIME CG43110 INTRON NT5E-2
3R	21250625	3R_21250625_SNP [dm3] 3R_25424903_SNP [dm6]	T	A	1.023e^-4	0.639	INTRON Fur1
3L	2122714	3L_2122714_SNP [dm3] 3L_2122714_SNP [dm6]	T	C	1.024e^-4	0.639	UTR_3_PRIME zormin INTRON zormin
3R	26449458	3R_26449458_SNP [dm3] 3R_30623736_SNP [dm6]	C	A	1.034e^-4	0.639	INTERGENIC
3L	7534143	3L_7534143_SNP [dm3] 3L_7541043_SNP [dm6]	G	C	1.039e^-4	0.639	SYNONYMOUS_CODING CG32374 DOWNSTREAM CG32376
3R	19008552	3R_19008552_SNP [dm3] 3R_23182830_SNP [dm6]	A	G	1.046e^-4	0.639	UPSTREAM Irk1 INTRON Irk1
2R	6631621	2R_6631621_SNP [dm3] 2R_10744116_SNP [dm6]	C	T	1.053e^-4	0.639	INTRON CG33144
3R	24046794	3R_24046794_SNP [dm3] 3R_28221072_SNP [dm6]	A	T	1.063e^-4	0.639	INTRON CG34354
3L	19681195	3L_19681195_SNP [dm3] 3L_19688095_SNP [dm6]	T	C	1.065e^-4	0.639	UPSTREAM CG8765 INTRON Gbeta76C
3L	19681200	3L_19681200_SNP [dm3] 3L_19688100_SNP [dm6]	T	C	1.065e^-4	0.639	UPSTREAM CG8765 INTRON Gbeta76C
3R	16965515	3R_16965515_SNP [dm3] 3R_21139793_SNP [dm6]	T	C	1.066e^-4	0.639	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8808247	3L_8808247_SNP [dm3] 3L_8815147_SNP [dm6]	T	C	1.068e^-4	0.639	INTERGENIC
3R	21250813	3R_21250813_SNP [dm3] 3R_25425091_SNP [dm6]	C	G	1.076e^-4	0.639	INTRON Fur1
3R	27032441	3R_27032441_SNP [dm3] 3R_31206719_SNP [dm6]	G	A	1.079e^-4	0.639	SPLICE_SITE_REGION chp INTRON chp
3R	24116948	3R_24116948_SNP [dm3] 3R_28291226_SNP [dm6]	C	T	1.084e^-4	0.639	UPSTREAM Mst98Ca INTERGENIC
3R	19725525	3R_19725525_SNP [dm3] 3R_23899803_SNP [dm6]	T	G	1.084e^-4	0.639	INTRON sba	TF binding site mE1_TFBS_chinmo
2L	13807752	2L_13807752_SNP [dm3] 2L_13807752_SNP [dm6]	T	C	1.096e^-4	0.639	DOWNSTREAM adat INTRON CAH1
3R	21250315	3R_21250315_SNP [dm3] 3R_25424593_SNP [dm6]	C	T	1.097e^-4	0.639	INTRON Fur1
2R	13954432	2R_13954432_SNP [dm3] 2R_18066927_SNP [dm6]	A	T	1.101e^-4	0.639	INTRON CG34386
3R	26395838	3R_26395838_SNP [dm3] 3R_30570116_SNP [dm6]	A	T	1.109e^-4	0.639	INTRON tmod	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	19815452	3R_19815452_SNP [dm3] 3R_23989730_SNP [dm6]	G	A	1.114e^-4	0.639	DOWNSTREAM CG5902 INTRON CG13604
3R	16984186	3R_16984186_SNP [dm3] 3R_21158464_SNP [dm6]	A	G	1.118e^-4	0.639	DOWNSTREAM CG10824 INTRON SNF4Agamma
3R	13788822	3R_13788822_SNP [dm3] 3R_17963100_SNP [dm6]	C	T	1.121e^-4	0.639	INTRON cpo
2L	14375378	2L_14375378_SNP [dm3] 2L_14375378_SNP [dm6]	G	C	1.123e^-4	0.639	INTERGENIC
3R	20132349	3R_20132349_SNP [dm3] 3R_24306627_SNP [dm6]	C	T	1.125e^-4	0.639	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20761436	3R_20761436_SNP [dm3] 3R_24935714_SNP [dm6]	G	A	1.144e^-4	0.639	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11736214	2R_11736214_SNP [dm3] 2R_15848709_SNP [dm6]	A	T	1.144e^-4	0.639	UTR_5_PRIME tun
X	21939023	X_21939023_SNP [dm3] X_22537187_SNP [dm6]	T	A	1.149e^-4	0.639	DOWNSTREAM S6kII INTRON CG17600 & 1 other	TF binding site mE1_TFBS_cad
3R	21250610	3R_21250610_SNP [dm3] 3R_25424888_SNP [dm6]	G	A	1.156e^-4	0.639	INTRON Fur1
3R	21250314	3R_21250314_SNP [dm3] 3R_25424592_SNP [dm6]	A	C	1.157e^-4	0.639	INTRON Fur1
3R	18139992	3R_18139992_SNP [dm3] 3R_22314270_SNP [dm6]	A	G	1.158e^-4	0.639	INTRON CG34377
3R	17540949	3R_17540949_SNP [dm3] 3R_21715227_SNP [dm6]	C	A	1.164e^-4	0.639	INTRON CG31176	TF binding site mE1_TFBS_HSA
3R	18914603	3R_18914603_SNP [dm3] 3R_23088881_SNP [dm6]	G	C	1.165e^-4	0.639	INTRON CG13830	TF binding site mE1_TFBS_cad
3R	10605610	3R_10605610_SNP [dm3] 3R_14779888_SNP [dm6]	A	T	1.167e^-4	0.639	INTRON jvl
2R	18286502	2R_18286502_SNP [dm3] 2R_22398997_SNP [dm6]	C	T	1.172e^-4	0.639	INTRON babos	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	19438480	X_19438480_SNP [dm3] X_19544447_SNP [dm6]	T	C	1.174e^-4	0.639	SYNONYMOUS_CODING CG32532 UTR_5_PRIME CG32532	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25414425	3R_25414425_SNP [dm3] 3R_29588703_SNP [dm6]	A	T	1.177e^-4	0.639	UPSTREAM CG7567 DOWNSTREAM CG11470 INTERGENIC
3L	19681193	3L_19681193_SNP [dm3] 3L_19688093_SNP [dm6]	C	T	1.182e^-4	0.639	UPSTREAM CG8765 INTRON Gbeta76C
3R	19848056	3R_19848056_SNP [dm3] 3R_24022334_SNP [dm6]	T	C	1.186e^-4	0.639	INTRON KrT95D
3R	1775883	3R_1775883_SNP [dm3] 3R_5950161_SNP [dm6]	T	C	1.187e^-4	0.639	INTRON CG34113
3R	1776314	3R_1776314_SNP [dm3] 3R_5950592_SNP [dm6]	T	G	1.187e^-4	0.639	INTRON CG34113
3R	1775881	3R_1775881_SNP [dm3] 3R_5950159_SNP [dm6]	G	A	1.190e^-4	0.639	INTRON CG34113
3R	26567027	3R_26567027_INS [dm3] 3R_30741305_INS [dm6]	A	AA	1.191e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	19829766	3R_19829766_SNP [dm3] 3R_24004044_SNP [dm6]	G	A	1.192e^-4	0.639	INTRON KrT95D
X	5897523	X_5897523_SNP [dm3] X_6003490_SNP [dm6]	C	G	1.199e^-4	0.639	INTRON CR44498
3R	26825015	3R_26825015_INS [dm3] 3R_30999293_INS [dm6]	C	CGTAC	1.202e^-4	0.639	INTRON 5-HT7
X	16151460	X_16151460_SNP [dm3] X_16257427_SNP [dm6]	G	C	1.203e^-4	0.639	INTERGENIC
3R	15315147	3R_15315147_SNP [dm3] 3R_19489425_SNP [dm6]	G	C	1.204e^-4	0.639	DOWNSTREAM CG15025 INTRON Dys
3R	26519459	3R_26519459_SNP [dm3] 3R_30693737_SNP [dm6]	C	T	1.207e^-4	0.639	UTR_3_PRIME CG12069 DOWNSTREAM Spn100A & 1 other
2L	14063646	2L_14063646_SNP [dm3] 2L_14063646_SNP [dm6]	T	C	1.214e^-4	0.639	INTRON nAChRalpha5
2L	18615530	2L_18615530_SNP [dm3] 2L_18615530_SNP [dm6]	C	G	1.219e^-4	0.639	INTRON CG15161	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13204889	3R_13204889_SNP [dm3] 3R_17379167_SNP [dm6]	G	A	1.225e^-4	0.639	UPSTREAM lute INTRON Brf
2L	19097106	2L_19097106_SNP [dm3] 2L_19097106_SNP [dm6]	G	T	1.235e^-4	0.639	INTRON Lim3
3R	13204912	3R_13204912_SNP [dm3] 3R_17379190_SNP [dm6]	A	C	1.245e^-4	0.639	UPSTREAM lute INTRON Brf
3L	420225	3L_420225_SNP [dm3] 3L_420225_SNP [dm6]	T	C	1.248e^-4	0.639	INTERGENIC
3L	420375	3L_420375_SNP [dm3] 3L_420375_SNP [dm6]	G	A	1.248e^-4	0.639	INTERGENIC
2L	2853851	2L_2853851_SNP [dm3] 2L_2853851_SNP [dm6]	G	A	1.251e^-4	0.639	INTRON CG3104
2R	19904472	2R_19904472_SNP [dm3] 2R_24016949_SNP [dm6]	G	A	1.253e^-4	0.639	UPSTREAM CG3121 INTRON CG4324	TF binding site BDTNP1_TFBS_twi
3R	24264948	3R_24264948_SNP [dm3] 3R_28439226_SNP [dm6]	C	A	1.257e^-4	0.639	INTRON beat-VI
3R	24116949	3R_24116949_SNP [dm3] 3R_28291227_SNP [dm6]	T	G	1.262e^-4	0.639	UPSTREAM Mst98Ca INTERGENIC
3R	18097294	3R_18097294_SNP [dm3] 3R_22271572_SNP [dm6]	G	T	1.265e^-4	0.639	INTRON SKIP
3R	26419637	3R_26419637_SNP [dm3] 3R_30593915_SNP [dm6]	G	A	1.267e^-4	0.639	INTRON CG2246	TF binding site mE1_TFBS_cad
3R	8996200	3R_8996200_SNP [dm3] 3R_13170478_SNP [dm6]	C	G	1.272e^-4	0.639	INTERGENIC
3R	23266004	3R_23266004_SNP [dm3] 3R_27440282_SNP [dm6]	C	G	1.276e^-4	0.639	UPSTREAM CG43447 INTRON CG44290	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	13058240	X_13058240_SNP [dm3] X_13164207_SNP [dm6]	G	C	1.278e^-4	0.639	INTRON CG34411
3R	20388480	3R_20388480_SNP [dm3] 3R_24562758_SNP [dm6]	G	A	1.286e^-4	0.639	SYNONYMOUS_CODING CG13624	TF binding site mE1_TFBS_cad
3R	23157154	3R_23157154_SNP [dm3] 3R_27331432_SNP [dm6]	G	A	1.295e^-4	0.639	UPSTREAM CG3330 INTERGENIC
2R	11752492	2R_11752492_SNP [dm3] 2R_15864987_SNP [dm6]	C	T	1.299e^-4	0.639	NON_SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2R	12780718	2R_12780718_SNP [dm3] 2R_16893213_SNP [dm6]	G	A	1.305e^-4	0.639	INTRON CG8910	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	15774851	3R_15774851_SNP [dm3] 3R_19949129_SNP [dm6]	C	A	1.309e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
3R	25252593	3R_25252593_SNP [dm3] 3R_29426871_SNP [dm6]	G	A	1.310e^-4	0.639	INTRON Ptp99A
3R	26256726	3R_26256726_SNP [dm3] 3R_30431004_SNP [dm6]	G	A	1.314e^-4	0.639	SYNONYMOUS_CODING CG15533	TF binding site BDTNP1_TFBS_bcd mE1_TFBS_cad
3R	13905922	3R_13905922_SNP [dm3] 3R_18080200_SNP [dm6]	T	C	1.316e^-4	0.639	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17540943	3R_17540943_SNP [dm3] 3R_21715221_SNP [dm6]	G	A	1.321e^-4	0.639	INTRON CG31176	TF binding site mE1_TFBS_HSA
3L	8439386	3L_8439386_SNP [dm3] 3L_8446286_SNP [dm6]	A	T	1.325e^-4	0.639	INTRON CG6983
X	14194459	X_14194459_SNP [dm3] X_14300426_SNP [dm6]	A	T	1.327e^-4	0.639	INTERGENIC
3R	25804500	3R_25804500_SNP [dm3] 3R_29978778_SNP [dm6]	C	T	1.331e^-4	0.639	INTERGENIC
3R	26729201	3R_26729201_SNP [dm3] 3R_30903479_SNP [dm6]	A	G	1.333e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	9501857	2L_9501857_SNP [dm3] 2L_9501857_SNP [dm6]	G	C	1.340e^-4	0.639	INTRON CG33298
2L	14745220	2L_14745220_SNP [dm3] 2L_14745220_SNP [dm6]	G	A	1.342e^-4	0.639	UPSTREAM CR45459 & 1 other DOWNSTREAM CR45460 & 1 other INTERGENIC
2L	14745422	2L_14745422_SNP [dm3] 2L_14745422_SNP [dm6]	G	A	1.342e^-4	0.639	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2L	14745426	2L_14745426_SNP [dm3] 2L_14745426_SNP [dm6]	C	T	1.342e^-4	0.639	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2L	14745435	2L_14745435_SNP [dm3] 2L_14745435_SNP [dm6]	C	T	1.342e^-4	0.639	UPSTREAM CR45459 & 1 other DOWNSTREAM CG42681 EXON CR45460
2L	19115908	2L_19115908_SNP [dm3] 2L_19115908_SNP [dm6]	G	T	1.343e^-4	0.639	SYNONYMOUS_CODING CG10561 DOWNSTREAM Ddc	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	11072463	3R_11072463_SNP [dm3] 3R_15246741_SNP [dm6]	A	G	1.345e^-4	0.639	DOWNSTREAM CG6499 & 1 other INTERGENIC
3R	26812290	3R_26812290_SNP [dm3] 3R_30986568_SNP [dm6]	A	G	1.349e^-4	0.639	INTRON 5-HT7
2R	11752617	2R_11752617_SNP [dm3] 2R_15865112_SNP [dm6]	T	G	1.349e^-4	0.639	NON_SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
2L	10803257	2L_10803257_SNP [dm3] 2L_10803257_SNP [dm6]	C	A	1.351e^-4	0.639	UPSTREAM CR44581 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	14768419	2L_14768419_SNP [dm3] 2L_14768419_SNP [dm6]	C	G	1.356e^-4	0.639	INTERGENIC
3R	18414298	3R_18414298_SNP [dm3] 3R_22588576_SNP [dm6]	T	C	1.358e^-4	0.639	INTRON Efa6	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26578345	3R_26578345_SNP [dm3] 3R_30752623_SNP [dm6]	A	C	1.359e^-4	0.639	INTERGENIC
3R	13906122	3R_13906122_SNP [dm3] 3R_18080400_SNP [dm6]	G	T	1.366e^-4	0.639	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4276390	2R_4276390_SNP [dm3] 2R_8388885_SNP [dm6]	G	C	1.371e^-4	0.639	INTRON pdm3	TF binding site mE1_TFBS_chinmo
3R	26748876	3R_26748876_SNP [dm3] 3R_30923154_SNP [dm6]	A	G	1.372e^-4	0.639	DOWNSTREAM CR44041 INTRON Ptx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17320609	3R_17320609_SNP [dm3] 3R_21494887_SNP [dm6]	C	T	1.380e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19936079	3R_19936079_SNP [dm3] 3R_24110357_SNP [dm6]	G	A	1.386e^-4	0.639	SYNONYMOUS_CODING CG13605 DOWNSTREAM CG18428	TF binding site BDTNP1_TFBS_Med
2L	6242882	2L_6242882_SNP [dm3] 2L_6242882_SNP [dm6]	A	G	1.388e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad
3R	18097330	3R_18097330_SNP [dm3] 3R_22271608_SNP [dm6]	G	A	1.390e^-4	0.639	INTRON SKIP
2L	11195140	2L_11195140_SNP [dm3] 2L_11195140_SNP [dm6]	G	A	1.391e^-4	0.639	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_inv
2R	13378714	2R_13378714_SNP [dm3] 2R_17491209_SNP [dm6]	T	C	1.393e^-4	0.639	SPLICE_SITE_REGION NT5E-2 INTRON NT5E-2
2R	13333189	2R_13333189_SNP [dm3] 2R_17445684_SNP [dm6]	C	T	1.405e^-4	0.639	NON_SYNONYMOUS_CODING mthl4 SPLICE_SITE_REGION mthl4 UPSTREAM EDTP
3R	23610729	3R_23610729_SNP [dm3] 3R_27785007_SNP [dm6]	T	A	1.411e^-4	0.639	INTRON CG34353
3R	26580469	3R_26580469_SNP [dm3] 3R_30754747_SNP [dm6]	A	T	1.412e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	11072464	3R_11072464_INS [dm3] 3R_15246742_INS [dm6]	T	TA	1.418e^-4	0.639	DOWNSTREAM CG6499 & 1 other INTERGENIC
3R	12099417	3R_12099417_SNP [dm3] 3R_16273695_SNP [dm6]	A	G	1.438e^-4	0.639	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_Trl mE1_TFBS_zfh1
3R	18189213	3R_18189213_SNP [dm3] 3R_22363491_SNP [dm6]	A	G	1.443e^-4	0.639	SYNONYMOUS_CODING Muted UTR_5_PRIME CG7071	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	3845393	2L_3845393_SNP [dm3] 2L_3845393_SNP [dm6]	T	C	1.443e^-4	0.639	EXON CR44983	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9463210	2L_9463210_SNP [dm3] 2L_9463210_SNP [dm6]	G	T	1.446e^-4	0.639	UTR_3_PRIME numb DOWNSTREAM numb	TF binding site mE1_TFBS_kn
X	8968427	X_8968427_INS [dm3] X_9074394_INS [dm6]	C	CTAC	1.453e^-4	0.639	INTRON CG44325
3R	11661707	3R_11661707_SNP [dm3] 3R_15835985_SNP [dm6]	G	C	1.464e^-4	0.639	UTR_3_PRIME Arpc3A DOWNSTREAM ND23 & 2 others	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
X	4774593	X_4774593_SNP [dm3] X_4880560_SNP [dm6]	A	G	1.465e^-4	0.639	INTRON CG42594	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19205304	3R_19205304_SNP [dm3] 3R_23379582_SNP [dm6]	C	T	1.476e^-4	0.639	SYNONYMOUS_CODING CG4393	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13905909	3R_13905909_SNP [dm3] 3R_18080187_SNP [dm6]	A	C	1.483e^-4	0.639	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	1453493	2L_1453493_SNP [dm3] 2L_1453493_SNP [dm6]	A	T	1.487e^-4	0.639	INTERGENIC
3R	20542691	3R_20542691_SNP [dm3] 3R_24716969_SNP [dm6]	G	T	1.498e^-4	0.639	NON_SYNONYMOUS_CODING CG13627 UPSTREAM Rpb10 DOWNSTREAM CG13630	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18039596	2R_18039596_SNP [dm3] 2R_22152091_SNP [dm6]	T	A	1.503e^-4	0.639	INTRON a
2R	6631615	2R_6631615_DEL [dm3] 2R_10744110_DEL [dm6]	TGT	A	1.512e^-4	0.639	INTRON CG33144
3R	26026176	3R_26026176_SNP [dm3] 3R_30200454_SNP [dm6]	C	T	1.515e^-4	0.639	INTRON CG9743	TF binding site mE1_TFBS_chinmo
3R	17320769	3R_17320769_SNP [dm3] 3R_21495047_SNP [dm6]	A	G	1.515e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	5594478	2L_5594478_SNP [dm3] 2L_5594478_SNP [dm6]	T	C	1.528e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26566976	3R_26566976_SNP [dm3] 3R_30741254_SNP [dm6]	A	G	1.542e^-4	0.639	INTERGENIC
3R	18534149	3R_18534149_SNP [dm3] 3R_22708427_SNP [dm6]	G	A	1.545e^-4	0.639	NON_SYNONYMOUS_CODING CG4907
3R	17320591	3R_17320591_SNP [dm3] 3R_21494869_SNP [dm6]	A	C	1.552e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25056498	3R_25056498_SNP [dm3] 3R_29230776_SNP [dm6]	C	T	1.552e^-4	0.639	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad
3R	26852265	3R_26852265_SNP [dm3] 3R_31026543_SNP [dm6]	T	G	1.557e^-4	0.639	INTERGENIC
3R	25804896	3R_25804896_SNP [dm3] 3R_29979174_SNP [dm6]	G	A	1.558e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26408924	3R_26408924_SNP [dm3] 3R_30583202_SNP [dm6]	A	G	1.565e^-4	0.639	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
X	19041797	X_19041797_SNP [dm3] X_19147764_SNP [dm6]	G	C	1.566e^-4	0.639	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
2L	11756213	2L_11756213_SNP [dm3] 2L_11756213_SNP [dm6]	A	T	1.567e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	21250726	3R_21250726_SNP [dm3] 3R_25425004_SNP [dm6]	A	G	1.580e^-4	0.639	INTRON Fur1
3L	19018943	3L_19018943_SNP [dm3] 3L_19025843_SNP [dm6]	C	T	1.585e^-4	0.639	INTRON nkd
3R	26812455	3R_26812455_SNP [dm3] 3R_30986733_SNP [dm6]	C	G	1.596e^-4	0.639	INTRON 5-HT7
X	19041654	X_19041654_DEL [dm3] X_19147621_DEL [dm6]	TA	T	1.598e^-4	0.639	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19118555	3R_19118555_SNP [dm3] 3R_23292833_SNP [dm6]	T	A	1.599e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	23604540	3R_23604540_SNP [dm3] 3R_27778818_SNP [dm6]	C	A	1.611e^-4	0.639	INTRON CG34353	TF binding site mE1_TFBS_chinmo
2L	13785623	2L_13785623_SNP [dm3] 2L_13785623_SNP [dm6]	C	T	1.620e^-4	0.639	SYNONYMOUS_CODING CG31731 UPSTREAM CR44847
2L	9921311	2L_9921311_SNP [dm3] 2L_9921311_SNP [dm6]	T	G	1.624e^-4	0.639	NON_SYNONYMOUS_CODING CG4594 UPSTREAM CG4592	TF binding site mE1_TFBS_inv
3L	20408636	3L_20408636_SNP [dm3] 3L_20415536_SNP [dm6]	C	A	1.630e^-4	0.639	INTRON zye
X	20477100	X_20477100_SNP [dm3] X_20606073_SNP [dm6]	T	A	1.631e^-4	0.639	INTRON RunxA
3R	16815527	3R_16815527_DEL [dm3] 3R_20989805_DEL [dm6]	ATT	C	1.644e^-4	0.639	UPSTREAM Calx INTRON Calx
X	11848222	X_11848222_SNP [dm3] X_11954189_SNP [dm6]	T	C	1.645e^-4	0.639	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	18639241	X_18639241_SNP [dm3] X_18745208_SNP [dm6]	C	A	1.646e^-4	0.639	INTERGENIC
3R	20279499	3R_20279499_SNP [dm3] 3R_24453777_SNP [dm6]	C	T	1.651e^-4	0.639	INTRON nAChRalpha1
3L	10371968	3L_10371968_SNP [dm3] 3L_10378868_SNP [dm6]	A	G	1.652e^-4	0.639	INTERGENIC
3R	26407430	3R_26407430_SNP [dm3] 3R_30581708_SNP [dm6]	A	G	1.659e^-4	0.639	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R
3R	15967759	3R_15967759_SNP [dm3] 3R_20142037_SNP [dm6]	A	C	1.660e^-4	0.639	INTERGENIC
3R	21250932	3R_21250932_SNP [dm3] 3R_25425210_SNP [dm6]	T	C	1.663e^-4	0.639	INTRON Fur1
X	17263497	X_17263497_SNP [dm3] X_17369464_SNP [dm6]	T	A	1.670e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27199348	3R_27199348_SNP [dm3] 3R_31373626_SNP [dm6]	G	T	1.679e^-4	0.639	SYNONYMOUS_CODING gskt	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14358939	3L_14358939_SNP [dm3] 3L_14365839_SNP [dm6]	T	C	1.679e^-4	0.639	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	17320786	3R_17320786_SNP [dm3] 3R_21495064_SNP [dm6]	A	G	1.685e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	21939037	X_21939037_SNP [dm3] X_22537201_SNP [dm6]	T	G	1.695e^-4	0.639	DOWNSTREAM S6kII INTRON CG17600 & 1 other	TF binding site mE1_TFBS_cad
3R	25682580	3R_25682580_SNP [dm3] 3R_29856858_SNP [dm6]	C	A	1.727e^-4	0.639	DOWNSTREAM CG7824 INTRON dgt1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10246101	3R_10246101_DEL [dm3] 3R_14420379_DEL [dm6]	GCCAACAAGG	G	1.735e^-4	0.639	INTRON cv-c & 1 other	TF binding site mE1_TFBS_cad
2R	8195434	2R_8195434_SNP [dm3] 2R_12307929_SNP [dm6]	T	C	1.742e^-4	0.639	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_cad
2R	15041193	2R_15041193_SNP [dm3] 2R_19153688_SNP [dm6]	G	A	1.743e^-4	0.639	INTRON ena	TF binding site mE1_TFBS_sens
3R	15967939	3R_15967939_SNP [dm3] 3R_20142217_SNP [dm6]	A	G	1.753e^-4	0.639	INTERGENIC
3R	25249601	3R_25249601_SNP [dm3] 3R_29423879_SNP [dm6]	A	C	1.760e^-4	0.639	INTRON Ptp99A
3R	11660512	3R_11660512_SNP [dm3] 3R_15834790_SNP [dm6]	A	G	1.760e^-4	0.639	UPSTREAM CG43317 INTRON Arpc3A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	19495871	2R_19495871_SNP [dm3] 2R_23608348_SNP [dm6]	G	C	1.762e^-4	0.639	SYNONYMOUS_CODING CG4019 INTRON CG17664	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18424340	3R_18424340_SNP [dm3] 3R_22598618_SNP [dm6]	A	T	1.766e^-4	0.639	INTRON Efa6	TF binding site mE1_TFBS_Trl
X	13206532	X_13206532_SNP [dm3] X_13312499_SNP [dm6]	G	A	1.771e^-4	0.639	INTRON IP3K2
3R	16502887	3R_16502887_SNP [dm3] 3R_20677165_SNP [dm6]	G	C	1.772e^-4	0.639	NON_SYNONYMOUS_CODING CG4000 EXON CR45024	TF binding site mE1_TFBS_chinmo
X	15009143	X_15009143_SNP [dm3] X_15115110_SNP [dm6]	T	C	1.772e^-4	0.639	SYNONYMOUS_CODING Cyp4s3
X	15009146	X_15009146_SNP [dm3] X_15115113_SNP [dm6]	T	C	1.772e^-4	0.639	SYNONYMOUS_CODING Cyp4s3
2L	2853815	2L_2853815_SNP [dm3] 2L_2853815_SNP [dm6]	T	A	1.772e^-4	0.639	INTRON CG3104
3L	729535	3L_729535_SNP [dm3] 3L_729535_SNP [dm6]	A	G	1.780e^-4	0.639	INTERGENIC
3R	22675394	3R_22675394_SNP [dm3] 3R_26849672_SNP [dm6]	A	G	1.781e^-4	0.639	INTRON Lerp
3R	19614238	3R_19614238_SNP [dm3] 3R_23788516_SNP [dm6]	A	C	1.782e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	17553952	3R_17553952_SNP [dm3] 3R_21728230_SNP [dm6]	A	G	1.788e^-4	0.639	INTERGENIC
3R	27395403	3R_27395403_SNP [dm3] 3R_31569681_SNP [dm6]	G	C	1.792e^-4	0.639	INTERGENIC
3R	26472045	3R_26472045_SNP [dm3] 3R_30646323_SNP [dm6]	G	A	1.806e^-4	0.639	UTR_3_PRIME PH4alphaPV UPSTREAM CG31013
3R	21252380	3R_21252380_SNP [dm3] 3R_25426658_SNP [dm6]	T	C	1.830e^-4	0.639	INTRON Fur1
3R	13847788	3R_13847788_SNP [dm3] 3R_18022066_SNP [dm6]	T	G	1.832e^-4	0.639	DOWNSTREAM DNaseII INTRON CG7785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17262956	3R_17262956_SNP [dm3] 3R_21437234_SNP [dm6]	G	A	1.832e^-4	0.639	UPSTREAM CR44089 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd
3R	20354217	3R_20354217_SNP [dm3] 3R_24528495_SNP [dm6]	T	G	1.834e^-4	0.639	SYNONYMOUS_CODING CG6607 DOWNSTREAM CG13618	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25726872	3R_25726872_SNP [dm3] 3R_29901150_SNP [dm6]	C	G	1.835e^-4	0.639	INTRON CG31038
3R	26750781	3R_26750781_SNP [dm3] 3R_30925059_SNP [dm6]	G	A	1.835e^-4	0.639	INTRON Ptx1
3R	15775294	3R_15775294_SNP [dm3] 3R_19949572_SNP [dm6]	A	C	1.842e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
3R	26010997	3R_26010997_INS [dm3] 3R_30185275_INS [dm6]	T	TT	1.861e^-4	0.639	UPSTREAM CR44262 DOWNSTREAM CG9747 INTERGENIC
3R	18534081	3R_18534081_SNP [dm3] 3R_22708359_SNP [dm6]	A	G	1.867e^-4	0.639	SYNONYMOUS_CODING CG4907
3L	2230672	3L_2230672_SNP [dm3] 3L_2230672_SNP [dm6]	T	C	1.876e^-4	0.639	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	18341873	X_18341873_SNP [dm3] X_18447840_SNP [dm6]	G	A	1.878e^-4	0.639	INTRON CG32547
3R	15775181	3R_15775181_DEL [dm3] 3R_19949459_DEL [dm6]	TTACGAAT	T	1.879e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
2R	13617592	2R_13617592_SNP [dm3] 2R_17730087_SNP [dm6]	G	C	1.886e^-4	0.639	INTRON CG4984 & 1 other
3R	20114694	3R_20114694_SNP [dm3] 3R_24288972_SNP [dm6]	G	C	1.887e^-4	0.639	NON_SYNONYMOUS_CODING CG34290 DOWNSTREAM CG6356
2R	13722470	2R_13722470_SNP [dm3] 2R_17834965_SNP [dm6]	T	G	1.896e^-4	0.639	INTRON grh
3R	17320434	3R_17320434_SNP [dm3] 3R_21494712_SNP [dm6]	T	A	1.901e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14744095	2L_14744095_SNP [dm3] 2L_14744095_SNP [dm6]	A	T	1.904e^-4	0.639	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
2L	14744123	2L_14744123_SNP [dm3] 2L_14744123_SNP [dm6]	C	T	1.904e^-4	0.639	UPSTREAM CG42681 DOWNSTREAM CG34166 & 1 other INTERGENIC
3R	15774875	3R_15774875_INS [dm3] 3R_19949153_INS [dm6]	AA	GCC	1.907e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
3R	21250812	3R_21250812_SNP [dm3] 3R_25425090_SNP [dm6]	A	T	1.919e^-4	0.639	INTRON Fur1
2R	6631629	2R_6631629_SNP [dm3] 2R_10744124_SNP [dm6]	G	A	1.920e^-4	0.639	INTRON CG33144
3R	11072466	3R_11072466_SNP [dm3] 3R_15246744_SNP [dm6]	T	A	1.934e^-4	0.639	DOWNSTREAM CG6499 & 1 other INTERGENIC
2L	3871504	2L_3871504_SNP [dm3] 2L_3871504_SNP [dm6]	G	A	1.936e^-4	0.639	UTR_3_PRIME CG31957 DOWNSTREAM Cep97	TF binding site mE1_TFBS_sens
3R	25329659	3R_25329659_SNP [dm3] 3R_29503937_SNP [dm6]	C	A	1.936e^-4	0.639	UPSTREAM Trc8 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	19832608	3R_19832608_SNP [dm3] 3R_24006886_SNP [dm6]	T	C	1.938e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	25951348	3R_25951348_SNP [dm3] 3R_30125626_SNP [dm6]	A	G	1.945e^-4	0.639	UPSTREAM CG45073 DOWNSTREAM Ppi1 INTERGENIC	TF binding site mE1_TFBS_inv
3R	16335712	3R_16335712_SNP [dm3] 3R_20509990_SNP [dm6]	T	C	1.946e^-4	0.639	INTRON CG4288
2L	14183367	2L_14183367_SNP [dm3] 2L_14183367_SNP [dm6]	G	T	1.946e^-4	0.639	INTERGENIC
3R	18031516	3R_18031516_SNP [dm3] 3R_22205794_SNP [dm6]	T	A	1.952e^-4	0.639	INTRON SKIP & 1 other
3R	16335709	3R_16335709_SNP [dm3] 3R_20509987_SNP [dm6]	A	C	1.953e^-4	0.639	INTRON CG4288
2R	8202112	2R_8202112_SNP [dm3] 2R_12314607_SNP [dm6]	T	G	1.963e^-4	0.639	DOWNSTREAM CG30203 INTRON CG30046
3L	10330345	3L_10330345_SNP [dm3] 3L_10337245_SNP [dm6]	C	T	1.964e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19832610	3R_19832610_SNP [dm3] 3R_24006888_SNP [dm6]	C	T	1.966e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	19832612	3R_19832612_SNP [dm3] 3R_24006890_SNP [dm6]	G	A	1.966e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	16948738	3L_16948738_SNP [dm3] 3L_16955638_SNP [dm6]	T	C	1.980e^-4	0.639	UPSTREAM Nc73EF INTRON Nc73EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18867627	2R_18867627_SNP [dm3] 2R_22980104_SNP [dm6]	C	T	1.989e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15063177	3R_15063177_SNP [dm3] 3R_19237455_SNP [dm6]	A	C	1.989e^-4	0.639	SYNONYMOUS_CODING unc79 INTRON unc79	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	19686352	X_19686352_SNP [dm3] X_19792319_SNP [dm6]	C	T	1.992e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	23469487	3R_23469487_SNP [dm3] 3R_27643765_SNP [dm6]	T	A	1.993e^-4	0.639	INTRON tau
3R	8911723	3R_8911723_SNP [dm3] 3R_13086001_SNP [dm6]	G	A	1.997e^-4	0.639	UPSTREAM CG43063 DOWNSTREAM CR44967 INTERGENIC
3R	26409189	3R_26409189_SNP [dm3] 3R_30583467_SNP [dm6]	C	A	2.000e^-4	0.639	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	15119292	3R_15119292_SNP [dm3] 3R_19293570_SNP [dm6]	G	A	2.006e^-4	0.639	INTERGENIC
2R	8291092	2R_8291092_SNP [dm3] 2R_12403587_SNP [dm6]	A	G	2.007e^-4	0.639	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3R	18730791	3R_18730791_SNP [dm3] 3R_22905069_SNP [dm6]	G	C	2.013e^-4	0.639	INTRON klg
3R	19614118	3R_19614118_SNP [dm3] 3R_23788396_SNP [dm6]	G	A	2.019e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	19883848	3R_19883848_SNP [dm3] 3R_24058126_SNP [dm6]	T	C	2.025e^-4	0.639	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	18189024	3R_18189024_SNP [dm3] 3R_22363302_SNP [dm6]	G	A	2.026e^-4	0.639	UPSTREAM PSR INTRON CG7071 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
X	16151702	X_16151702_SNP [dm3] X_16257669_SNP [dm6]	G	C	2.032e^-4	0.639	INTERGENIC
3R	23257976	3R_23257976_SNP [dm3] 3R_27432254_SNP [dm6]	A	G	2.044e^-4	0.639	INTRON side
3R	18775081	3R_18775081_SNP [dm3] 3R_22949359_SNP [dm6]	T	C	2.047e^-4	0.639	INTRON klg
3R	19883782	3R_19883782_DEL [dm3] 3R_24058060_DEL [dm6]	CA	C	2.067e^-4	0.639	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	14432084	2L_14432084_SNP [dm3] 2L_14432084_SNP [dm6]	G	T	2.073e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
X	12506810	X_12506810_SNP [dm3] X_12612777_SNP [dm6]	A	G	2.079e^-4	0.639	SPLICE_SITE_REGION CG2543 DOWNSTREAM CR45621 INTRON CG2543 EXON CR45621	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	17849116	3R_17849116_SNP [dm3] 3R_22023394_SNP [dm6]	T	G	2.085e^-4	0.639	UPSTREAM mRpL35 & 1 other DOWNSTREAM CG6028 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	17849129	3R_17849129_SNP [dm3] 3R_22023407_SNP [dm6]	T	G	2.085e^-4	0.639	UPSTREAM mRpL35 & 1 other DOWNSTREAM CG6028 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3R	26258423	3R_26258423_SNP [dm3] 3R_30432701_SNP [dm6]	A	T	2.085e^-4	0.639	NON_SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6631627	2R_6631627_SNP [dm3] 2R_10744122_SNP [dm6]	A	T	2.086e^-4	0.639	INTRON CG33144
3L	5833842	3L_5833842_SNP [dm3] 3L_5840742_SNP [dm6]	G	T	2.093e^-4	0.639	INTRON vn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	13627834	2L_13627834_SNP [dm3] 2L_13627834_SNP [dm6]	T	C	2.094e^-4	0.639	INTRON kuz
3R	26258419	3R_26258419_SNP [dm3] 3R_30432697_SNP [dm6]	T	C	2.105e^-4	0.639	SYNONYMOUS_CODING CG15534	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26410576	3R_26410576_SNP [dm3] 3R_30584854_SNP [dm6]	T	G	2.109e^-4	0.639	SYNONYMOUS_CODING CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	23839104	3L_23839104_DEL [dm3] 3L_23846004_DEL [dm6]	GCGG	G	2.116e^-4	0.639	INTRON CG40470
3R	20380175	3R_20380175_SNP [dm3] 3R_24554453_SNP [dm6]	C	T	2.116e^-4	0.639	UPSTREAM tRNA:D:96A INTRON Esyt2	TF binding site BDTNP1_TFBS_dl
2R	3749412	2R_3749412_SNP [dm3] 2R_7861907_SNP [dm6]	A	T	2.123e^-4	0.639	INTRON Dgk
3R	19118684	3R_19118684_SNP [dm3] 3R_23292962_SNP [dm6]	T	C	2.125e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21250903	3R_21250903_SNP [dm3] 3R_25425181_SNP [dm6]	G	T	2.126e^-4	0.639	INTRON Fur1
3R	25306113	3R_25306113_SNP [dm3] 3R_29480391_SNP [dm6]	G	A	2.140e^-4	0.639	INTRON Ptp99A
3R	24688811	3R_24688811_SNP [dm3] 3R_28863089_SNP [dm6]	G	C	2.140e^-4	0.639	SYNONYMOUS_CODING spg
3R	23216594	3R_23216594_SNP [dm3] 3R_27390872_SNP [dm6]	T	A	2.140e^-4	0.639	INTRON side
3R	17063391	3R_17063391_SNP [dm3] 3R_21237669_SNP [dm6]	A	G	2.144e^-4	0.639	UPSTREAM e INTERGENIC	regulatory region REDfly_CRMs
3R	10913104	3R_10913104_SNP [dm3] 3R_15087382_SNP [dm6]	G	T	2.149e^-4	0.639	INTRON CG6966
3R	20621109	3R_20621109_SNP [dm3] 3R_24795387_SNP [dm6]	C	T	2.163e^-4	0.639	INTRON Ets96B
3R	24994812	3R_24994812_SNP [dm3] 3R_29169090_SNP [dm6]	C	A	2.170e^-4	0.639	SYNONYMOUS_CODING CG11898
3R	18588565	3R_18588565_SNP [dm3] 3R_22762843_SNP [dm6]	C	T	2.178e^-4	0.639	SYNONYMOUS_CODING CG4723 INTRON Usp12-46 & 1 other
3R	17510921	3R_17510921_SNP [dm3] 3R_21685199_SNP [dm6]	A	T	2.185e^-4	0.639	INTRON CG31176
X	14746199	X_14746199_SNP [dm3] X_14852166_SNP [dm6]	C	T	2.202e^-4	0.639	SYNONYMOUS_CODING CG9521 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	11697421	3R_11697421_SNP [dm3] 3R_15871699_SNP [dm6]	G	A	2.204e^-4	0.639	INTRON CG31183
3R	5268396	3R_5268396_SNP [dm3] 3R_9442674_SNP [dm6]	T	C	2.206e^-4	0.639	INTRON ps
3R	18848670	3R_18848670_SNP [dm3] 3R_23022948_SNP [dm6]	C	T	2.208e^-4	0.639	INTRON lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11473841	2R_11473841_SNP [dm3] 2R_15586336_SNP [dm6]	T	A	2.210e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	22441766	3R_22441766_SNP [dm3] 3R_26616044_SNP [dm6]	C	A	2.221e^-4	0.639	INTERGENIC
3R	19118605	3R_19118605_SNP [dm3] 3R_23292883_SNP [dm6]	C	A	2.223e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3R	24127314	3R_24127314_SNP [dm3] 3R_28301592_SNP [dm6]	C	G	2.224e^-4	0.639	INTERGENIC
3R	18508463	3R_18508463_SNP [dm3] 3R_22682741_SNP [dm6]	A	T	2.231e^-4	0.639	UTR_3_PRIME CG45058 DOWNSTREAM CG45058
3R	25056734	3R_25056734_SNP [dm3] 3R_29231012_SNP [dm6]	C	A	2.232e^-4	0.639	INTRON CG15817	TF binding site mE1_TFBS_cad
3R	26657597	3R_26657597_SNP [dm3] 3R_30831875_SNP [dm6]	A	G	2.239e^-4	0.639	INTRON CG15544
3R	17853521	3R_17853521_INS [dm3] 3R_22027799_INS [dm6]	A	AA	2.241e^-4	0.639	UTR_5_PRIME ND42 UPSTREAM Cchl INTRON ND42	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	23713663	3R_23713663_SNP [dm3] 3R_27887941_SNP [dm6]	T	A	2.246e^-4	0.639	INTRON CG34353
3R	25725074	3R_25725074_SNP [dm3] 3R_29899352_SNP [dm6]	T	G	2.246e^-4	0.639	DOWNSTREAM CG31038 INTRON CG31038
3R	25058430	3R_25058430_SNP [dm3] 3R_29232708_SNP [dm6]	A	C	2.246e^-4	0.639	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad
3R	13073542	3R_13073542_SNP [dm3] 3R_17247820_SNP [dm6]	T	C	2.254e^-4	0.639	UTR_5_PRIME beat-IIb	TF binding site BDTNP1_TFBS_twi
3L	3115678	3L_3115678_SNP [dm3] 3L_3115678_SNP [dm6]	C	T	2.260e^-4	0.639	UTR_3_PRIME prominin-like DOWNSTREAM prominin-like
3R	20254532	3R_20254532_SNP [dm3] 3R_24428810_SNP [dm6]	A	C	2.260e^-4	0.639	INTRON nAChRalpha1
3R	347750	3R_347750_INS [dm3] 3R_4522028_INS [dm6]	C	CTA	2.262e^-4	0.639	INTRON CG34357
3R	20354329	3R_20354329_SNP [dm3] 3R_24528607_SNP [dm6]	T	A	2.266e^-4	0.639	NON_SYNONYMOUS_CODING CG6607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27027881	3R_27027881_SNP [dm3] 3R_31202159_SNP [dm6]	G	C	2.268e^-4	0.639	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17848066	3R_17848066_SNP [dm3] 3R_22022344_SNP [dm6]	G	A	2.277e^-4	0.639	INTRON CG6455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	11153295	2L_11153295_SNP [dm3] 2L_11153295_SNP [dm6]	T	C	2.279e^-4	0.639	INTRON CG6287
2L	11153296	2L_11153296_SNP [dm3] 2L_11153296_SNP [dm6]	T	C	2.279e^-4	0.639	INTRON CG6287
3R	17883982	3R_17883982_SNP [dm3] 3R_22058260_SNP [dm6]	T	A	2.280e^-4	0.639	INTRON how
3R	7121991	3R_7121991_SNP [dm3] 3R_11296269_SNP [dm6]	T	G	2.285e^-4	0.639	INTRON CR31386	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5413619	2R_5413619_SNP [dm3] 2R_9526114_SNP [dm6]	T	G	2.293e^-4	0.639	INTRON brp
2L	19111147	2L_19111147_SNP [dm3] 2L_19111147_SNP [dm6]	G	T	2.297e^-4	0.639	UPSTREAM amd INTRON amd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_Trl
3L	1941172	3L_1941172_SNP [dm3] 3L_1941172_SNP [dm6]	C	A	2.306e^-4	0.639	UTR_5_PRIME Mfap1 UPSTREAM CR44536	TF binding site mE1_TFBS_cad
2R	18501614	2R_18501614_SNP [dm3] 2R_22614109_SNP [dm6]	A	T	2.310e^-4	0.639	UPSTREAM CG33143 & 1 other INTERGENIC
3L	6250180	3L_6250180_SNP [dm3] 3L_6257080_SNP [dm6]	G	T	2.310e^-4	0.639	UPSTREAM Best2 DOWNSTREAM CG10163 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17849463	3R_17849463_SNP [dm3] 3R_22023741_SNP [dm6]	G	A	2.311e^-4	0.639	NON_SYNONYMOUS_CODING mRpL35 UPSTREAM CG6455 DOWNSTREAM CG6028	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_ttk mE1_TFBS_Ubx
2R	6631574	2R_6631574_SNP [dm3] 2R_10744069_SNP [dm6]	G	A	2.312e^-4	0.639	INTRON CG33144
3R	25240079	3R_25240079_SNP [dm3] 3R_29414357_SNP [dm6]	T	C	2.315e^-4	0.639	INTRON Ptp99A
3R	19832498	3R_19832498_SNP [dm3] 3R_24006776_SNP [dm6]	T	A	2.320e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22441293	3R_22441293_SNP [dm3] 3R_26615571_SNP [dm6]	C	T	2.320e^-4	0.639	INTERGENIC
2R	9313798	2R_9313798_SNP [dm3] 2R_13426293_SNP [dm6]	T	C	2.321e^-4	0.639	INTRON CG42321	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18690369	3R_18690369_SNP [dm3] 3R_22864647_SNP [dm6]	A	G	2.326e^-4	0.639	INTERGENIC
3R	19022769	3R_19022769_SNP [dm3] 3R_23197047_SNP [dm6]	A	C	2.327e^-4	0.639	INTRON cnc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17359231	3R_17359231_SNP [dm3] 3R_21533509_SNP [dm6]	T	C	2.337e^-4	0.639	UPSTREAM CR43372 & 1 other INTERGENIC
3R	19916485	3R_19916485_DEL [dm3] 3R_24090763_DEL [dm6]	CG	C	2.337e^-4	0.639	INTRON 4EHP
3R	18031453	3R_18031453_DEL [dm3] 3R_22205731_DEL [dm6]	AAGAGC	TTT	2.343e^-4	0.639	INTRON SKIP & 1 other
3R	18031461	3R_18031461_MNP [dm3] 3R_22205739_MNP [dm6]	TCTT	AAGA	2.343e^-4	0.639	INTRON SKIP & 1 other
3R	18031467	3R_18031467_SNP [dm3] 3R_22205745_SNP [dm6]	A	G	2.343e^-4	0.639	INTRON SKIP & 1 other
3R	18031471	3R_18031471_SNP [dm3] 3R_22205749_SNP [dm6]	T	C	2.343e^-4	0.639	INTRON SKIP & 1 other
3R	26664568	3R_26664568_SNP [dm3] 3R_30838846_SNP [dm6]	C	T	2.344e^-4	0.639	SYNONYMOUS_CODING CG15544
3R	26663336	3R_26663336_DEL [dm3] 3R_30837614_DEL [dm6]	AAATG	T	2.352e^-4	0.639	INTRON CG15544
3R	26663342	3R_26663342_INS [dm3] 3R_30837620_INS [dm6]	C	CGACCTGATG	2.352e^-4	0.639	INTRON CG15544
3R	26822140	3R_26822140_SNP [dm3] 3R_30996418_SNP [dm6]	G	C	2.353e^-4	0.639	INTRON 5-HT7
3R	26084491	3R_26084491_SNP [dm3] 3R_30258769_SNP [dm6]	A	G	2.354e^-4	0.639	INTERGENIC
3R	22371711	3R_22371711_DEL [dm3] 3R_26545989_DEL [dm6]	GCAA	C	2.360e^-4	0.639	INTRON scrib
X	20486093	X_20486093_INS [dm3] X_20615066_INS [dm6]	T	TT	2.360e^-4	0.639	INTRON RunxA	transposable element FlyBase
3R	17793294	3R_17793294_SNP [dm3] 3R_21967572_SNP [dm6]	G	C	2.363e^-4	0.639	INTRON Eip93F
3R	10206415	3R_10206415_SNP [dm3] 3R_14380693_SNP [dm6]	A	T	2.366e^-4	0.639	UTR_3_PRIME soti
X	3971530	X_3971530_SNP [dm3] X_4077497_SNP [dm6]	C	T	2.367e^-4	0.639	INTRON CG43689
3L	11446103	3L_11446103_INS [dm3] 3L_11453003_INS [dm6]	T	TTACGCCCCGT...	2.381e^-4	0.639	INTERGENIC
3R	23484166	3R_23484166_SNP [dm3] 3R_27658444_SNP [dm6]	T	G	2.384e^-4	0.639	INTRON Mlc1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
2L	15458281	2L_15458281_SNP [dm3] 2L_15458281_SNP [dm6]	T	A	2.384e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	19811818	3R_19811818_SNP [dm3] 3R_23986096_SNP [dm6]	G	A	2.387e^-4	0.639	SYNONYMOUS_CODING CG13603 UPSTREAM CG5902	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26545049	3R_26545049_DEL [dm3] 3R_30719327_DEL [dm6]	CGAGATGTTC	C	2.390e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	2712474	3L_2712474_SNP [dm3] 3L_2712474_SNP [dm6]	C	A	2.398e^-4	0.639	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13860513	2R_13860513_SNP [dm3] 2R_17973008_SNP [dm6]	C	A	2.398e^-4	0.639	INTERGENIC
3R	22813274	3R_22813274_SNP [dm3] 3R_26987552_SNP [dm6]	C	T	2.400e^-4	0.639	UTR_5_PRIME CG31075 INTRON CG31075
3R	16965539	3R_16965539_SNP [dm3] 3R_21139817_SNP [dm6]	T	G	2.401e^-4	0.639	SYNONYMOUS_CODING meigo UPSTREAM SNF4Agamma	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18092623	3R_18092623_SNP [dm3] 3R_22266901_SNP [dm6]	T	A	2.402e^-4	0.639	INTRON SKIP	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17654041	3R_17654041_SNP [dm3] 3R_21828319_SNP [dm6]	T	C	2.404e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	17657392	3R_17657392_SNP [dm3] 3R_21831670_SNP [dm6]	A	G	2.418e^-4	0.639	UPSTREAM Gr93a INTERGENIC
3R	27136784	3R_27136784_SNP [dm3] 3R_31311062_SNP [dm6]	A	C	2.431e^-4	0.639	UPSTREAM CG34347 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	13749387	2L_13749387_SNP [dm3] 2L_13749387_SNP [dm6]	T	C	2.435e^-4	0.639	INTRON CR44846 & 1 other
3R	26410414	3R_26410414_SNP [dm3] 3R_30584692_SNP [dm6]	A	G	2.437e^-4	0.639	SYNONYMOUS_CODING CG9717 UPSTREAM Rpt6R	TF binding site mE1_TFBS_cad
3L	2712269	3L_2712269_SNP [dm3] 3L_2712269_SNP [dm6]	C	G	2.444e^-4	0.639	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2712305	3L_2712305_SNP [dm3] 3L_2712305_SNP [dm6]	C	T	2.444e^-4	0.639	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7589622	3L_7589622_SNP [dm3] 3L_7596522_SNP [dm6]	C	T	2.447e^-4	0.639	UPSTREAM CG33275 INTRON CG33275
3R	19870278	3R_19870278_SNP [dm3] 3R_24044556_SNP [dm6]	G	A	2.451e^-4	0.639	SYNONYMOUS_CODING Rox8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	17191908	X_17191908_SNP [dm3] X_17297875_SNP [dm6]	C	A	2.456e^-4	0.639	INTRON CG5445 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22759837	3R_22759837_SNP [dm3] 3R_26934115_SNP [dm6]	G	T	2.457e^-4	0.639	INTRON sda
3R	19815224	3R_19815224_SNP [dm3] 3R_23989502_SNP [dm6]	C	T	2.461e^-4	0.639	SYNONYMOUS_CODING CG13604 DOWNSTREAM CG5902
3L	6727421	3L_6727421_SNP [dm3] 3L_6734321_SNP [dm6]	C	T	2.463e^-4	0.639	SYNONYMOUS_CODING dikar	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24203963	3R_24203963_SNP [dm3] 3R_28378241_SNP [dm6]	C	G	2.465e^-4	0.639	INTERGENIC
3R	26407039	3R_26407039_SNP [dm3] 3R_30581317_SNP [dm6]	T	C	2.472e^-4	0.639	SYNONYMOUS_CODING CG9702 DOWNSTREAM Rpt6R	TF binding site mE1_TFBS_sens
2R	7594370	2R_7594370_SNP [dm3] 2R_11706865_SNP [dm6]	T	C	2.481e^-4	0.639	UPSTREAM CR45377 INTERGENIC
3R	19832565	3R_19832565_SNP [dm3] 3R_24006843_SNP [dm6]	G	A	2.483e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	14205791	3R_14205791_SNP [dm3] 3R_18380069_SNP [dm6]	T	G	2.484e^-4	0.639	INTRON CG7675
2L	19098348	2L_19098348_INS [dm3] 2L_19098348_INS [dm6]	A	AA	2.485e^-4	0.639	INTRON Lim3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19110911	2L_19110911_DEL [dm3] 2L_19110911_DEL [dm6]	TA	T	2.488e^-4	0.639	UPSTREAM amd INTRON amd	TF binding site mE1_TFBS_HSA
3R	25056217	3R_25056217_SNP [dm3] 3R_29230495_SNP [dm6]	G	A	2.490e^-4	0.639	NON_SYNONYMOUS_CODING CG15817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	3374142	X_3374142_SNP [dm3] X_3480109_SNP [dm6]	C	T	2.498e^-4	0.639	SYNONYMOUS_CODING CG10804 INTRON CR44999	TF binding site mE1_TFBS_cad
X	20185313	X_20185313_DEL [dm3] X_20314286_DEL [dm6]	CTTCTGCTCCCCTGCTCCCC...	C	2.504e^-4	0.639	INTRON CG1504
3R	27013661	3R_27013661_SNP [dm3] 3R_31187939_SNP [dm6]	T	G	2.505e^-4	0.639	INTRON mesh
3R	12627005	3R_12627005_SNP [dm3] 3R_16801283_SNP [dm6]	G	C	2.517e^-4	0.639	UPSTREAM CR45751 DOWNSTREAM CR45750 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	24264545	3R_24264545_SNP [dm3] 3R_28438823_SNP [dm6]	C	T	2.518e^-4	0.639	INTRON beat-VI
3R	26813036	3R_26813036_SNP [dm3] 3R_30987314_SNP [dm6]	T	G	2.522e^-4	0.639	INTRON 5-HT7	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17693745	3R_17693745_SNP [dm3] 3R_21868023_SNP [dm6]	G	C	2.536e^-4	0.639	UTR_5_PRIME Cby UPSTREAM Cby & 1 other DOWNSTREAM CG31174
2L	18611636	2L_18611636_SNP [dm3] 2L_18611636_SNP [dm6]	A	G	2.543e^-4	0.639	SYNONYMOUS_CODING Atac2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18286639	2R_18286639_SNP [dm3] 2R_22399134_SNP [dm6]	T	A	2.544e^-4	0.639	INTRON babos	TF binding site BDTNP1_TFBS_dl
3R	17848080	3R_17848080_INS [dm3] 3R_22022358_INS [dm6]	C	CC	2.544e^-4	0.639	INTRON CG6455	TF binding site BDTNP1_TFBS_dl
3L	420130	3L_420130_INS [dm3] 3L_420130_INS [dm6]	C	CCACAC	2.553e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	10610051	3R_10610051_SNP [dm3] 3R_14784329_SNP [dm6]	T	C	2.555e^-4	0.639	INTRON jvl
2L	6092189	2L_6092189_SNP [dm3] 2L_6092189_SNP [dm6]	C	T	2.558e^-4	0.639	SYNONYMOUS_CODING Kr-h1 UTR_3_PRIME CG45075 INTRON Kr-h1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	11705512	3R_11705512_SNP [dm3] 3R_15879790_SNP [dm6]	C	A	2.566e^-4	0.639	INTERGENIC
2L	2759159	2L_2759159_SNP [dm3] 2L_2759159_SNP [dm6]	C	T	2.566e^-4	0.639	SYNONYMOUS_CODING CG9960 UTR_3_PRIME Snapin UPSTREAM CR44772 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	3827588	3L_3827588_SNP [dm3] 3L_3827588_SNP [dm6]	T	G	2.573e^-4	0.639	INTRON enc & 1 other	TF binding site BDTNP1_TFBS_dl
3L	10173190	3L_10173190_SNP [dm3] 3L_10180090_SNP [dm6]	C	T	2.583e^-4	0.639	INTRON dpr10
3L	14364528	3L_14364528_INS [dm3] 3L_14371428_INS [dm6]	T	TAA	2.591e^-4	0.639	INTERGENIC
3R	26853779	3R_26853779_SNP [dm3] 3R_31028057_SNP [dm6]	C	T	2.609e^-4	0.639	INTERGENIC
3R	26853780	3R_26853780_SNP [dm3] 3R_31028058_SNP [dm6]	C	T	2.609e^-4	0.639	INTERGENIC
3R	20713868	3R_20713868_SNP [dm3] 3R_24888146_SNP [dm6]	T	G	2.609e^-4	0.639	INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19110929	2L_19110929_SNP [dm3] 2L_19110929_SNP [dm6]	T	C	2.611e^-4	0.639	UPSTREAM amd INTRON amd	TF binding site mE1_TFBS_HSA
2L	2905165	2L_2905165_SNP [dm3] 2L_2905165_SNP [dm6]	T	A	2.614e^-4	0.639	INTRON lilli
3R	26663633	3R_26663633_INS [dm3] 3R_30837911_INS [dm6]	T	TGCCACAT	2.616e^-4	0.639	INTRON CG15544
3R	20539708	3R_20539708_SNP [dm3] 3R_24713986_SNP [dm6]	C	A	2.618e^-4	0.639	UPSTREAM CG13627 INTRON CG13627
3L	11147599	3L_11147599_INS [dm3] 3L_11154499_INS [dm6]	A	AAGGCAA	2.624e^-4	0.639	INTRON CG32082
3R	27130809	3R_27130809_SNP [dm3] 3R_31305087_SNP [dm6]	T	C	2.627e^-4	0.639	UTR_5_PRIME CG11340
3R	20351020	3R_20351020_SNP [dm3] 3R_24525298_SNP [dm6]	G	T	2.632e^-4	0.639	INTRON CG13618
2L	1717442	2L_1717442_SNP [dm3] 2L_1717442_SNP [dm6]	C	T	2.638e^-4	0.639	INTRON Rim2
2R	19415511	2R_19415511_SNP [dm3] 2R_23527988_SNP [dm6]	C	T	2.638e^-4	0.639	UTR_3_PRIME mi & 1 other DOWNSTREAM bw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3793377	2R_3793377_SNP [dm3] 2R_7905872_SNP [dm6]	A	G	2.640e^-4	0.639	SYNONYMOUS_CODING CG30377	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26333631	3R_26333631_INS [dm3] 3R_30507909_INS [dm6]	C	TGTAAATGAATGGAT...	2.640e^-4	0.639	UPSTREAM CG34041
3R	21454260	3R_21454260_SNP [dm3] 3R_25628538_SNP [dm6]	C	A	2.644e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19118688	3R_19118688_SNP [dm3] 3R_23292966_SNP [dm6]	G	T	2.651e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	14236346	2L_14236346_SNP [dm3] 2L_14236346_SNP [dm6]	A	T	2.654e^-4	0.639	DOWNSTREAM CR44728 INTERGENIC
3R	25309091	3R_25309091_SNP [dm3] 3R_29483369_SNP [dm6]	T	C	2.654e^-4	0.639	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	20277842	3R_20277842_SNP [dm3] 3R_24452120_SNP [dm6]	G	A	2.657e^-4	0.639	UTR_5_PRIME nAChRalpha1
3R	18573137	3R_18573137_SNP [dm3] 3R_22747415_SNP [dm6]	G	A	2.672e^-4	0.639	SYNONYMOUS_CODING CG17141 DOWNSTREAM HP1c & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19081941	3R_19081941_SNP [dm3] 3R_23256219_SNP [dm6]	A	G	2.680e^-4	0.639	SYNONYMOUS_CODING wda	TF binding site mE1_TFBS_cad
3L	16391054	3L_16391054_SNP [dm3] 3L_16397954_SNP [dm6]	A	G	2.682e^-4	0.639	SYNONYMOUS_CODING CG44836
3L	14359010	3L_14359010_SNP [dm3] 3L_14365910_SNP [dm6]	T	C	2.685e^-4	0.639	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	19497726	2R_19497726_SNP [dm3] 2R_23610203_SNP [dm6]	G	C	2.689e^-4	0.639	UPSTREAM CG4019 INTRON CG17664 & 1 other
3R	22814753	3R_22814753_SNP [dm3] 3R_26989031_SNP [dm6]	A	T	2.690e^-4	0.639	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	11756211	2L_11756211_SNP [dm3] 2L_11756211_SNP [dm6]	A	G	2.696e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12631947	3R_12631947_SNP [dm3] 3R_16806225_SNP [dm6]	A	C	2.701e^-4	0.639	DOWNSTREAM abd-A INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7655489	2R_7655489_SNP [dm3] 2R_11767984_SNP [dm6]	G	C	2.709e^-4	0.639	UPSTREAM CG13193 INTRON ths
3L	1692697	3L_1692697_SNP [dm3] 3L_1692697_SNP [dm6]	C	G	2.713e^-4	0.639	INTRON CG7991	TF binding site mE1_TFBS_cad
2R	4739055	2R_4739055_SNP [dm3] 2R_8851550_SNP [dm6]	C	T	2.718e^-4	0.639	INTRON sns	TF binding site mE1_TFBS_inv
3R	26580467	3R_26580467_SNP [dm3] 3R_30754745_SNP [dm6]	C	A	2.721e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	21249953	3R_21249953_SNP [dm3] 3R_25424231_SNP [dm6]	G	A	2.721e^-4	0.639	INTRON Fur1
3R	17848089	3R_17848089_INS [dm3] 3R_22022367_INS [dm6]	C	CCC	2.728e^-4	0.639	INTRON CG6455	TF binding site BDTNP1_TFBS_dl
3R	17782740	3R_17782740_SNP [dm3] 3R_21957018_SNP [dm6]	A	T	2.736e^-4	0.639	INTRON Eip93F
3R	19956345	3R_19956345_SNP [dm3] 3R_24130623_SNP [dm6]	G	C	2.737e^-4	0.639	UTR_5_PRIME Tsc1 UPSTREAM CG5463	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20007543	3R_20007543_SNP [dm3] 3R_24181821_SNP [dm6]	G	C	2.737e^-4	0.639	DOWNSTREAM CG13606 INTRON CG13606
3R	20108509	3R_20108509_SNP [dm3] 3R_24282787_SNP [dm6]	C	G	2.737e^-4	0.639	DOWNSTREAM CR45662 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	20114220	3R_20114220_SNP [dm3] 3R_24288498_SNP [dm6]	T	C	2.737e^-4	0.639	UTR_3_PRIME CG6356 DOWNSTREAM CG34290	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5819852	3L_5819852_INS [dm3] 3L_5826752_INS [dm6]	A	AA	2.738e^-4	0.639	INTRON vn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26139256	3R_26139256_SNP [dm3] 3R_30313534_SNP [dm6]	A	G	2.749e^-4	0.639	INTRON hdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18472697	3R_18472697_DEL [dm3] 3R_22646975_DEL [dm6]	AATATTGAAAATTAAAGCCG...	A	2.752e^-4	0.639	INTRON CG45058
2L	17525496	2L_17525496_SNP [dm3] 2L_17525496_SNP [dm6]	A	G	2.771e^-4	0.639	UTR_3_PRIME Dhc36C UPSTREAM CG15143 DOWNSTREAM CG15144
3R	17504096	3R_17504096_SNP [dm3] 3R_21678374_SNP [dm6]	A	T	2.776e^-4	0.639	INTRON CG31176
X	16550703	X_16550703_SNP [dm3] X_16656670_SNP [dm6]	A	G	2.780e^-4	0.639	SYNONYMOUS_CODING r	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	17680476	X_17680476_DEL [dm3] X_17786443_DEL [dm6]	CCCCCTCACCCCACCCCA...	C	2.791e^-4	0.639	INTERGENIC
3R	25951789	3R_25951789_SNP [dm3] 3R_30126067_SNP [dm6]	G	T	2.806e^-4	0.639	NON_SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo
X	8773646	X_8773646_DEL [dm3] X_8879613_DEL [dm6]	TT	T	2.808e^-4	0.639	UPSTREAM Moe INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8773651	X_8773651_DEL [dm3] X_8879618_DEL [dm6]	AT	A	2.808e^-4	0.639	UPSTREAM Moe INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	8773656	X_8773656_DEL [dm3] X_8879623_DEL [dm6]	GTGTT	G	2.808e^-4	0.639	UPSTREAM Moe INTRON Moe	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	12434626	X_12434626_DEL [dm3] X_12540593_DEL [dm6]	TTGCGCTTTTCTT...	T	2.810e^-4	0.639	INTRON CG43921	TF binding site BDTNP1_TFBS_dl
2L	10131327	2L_10131327_SNP [dm3] 2L_10131327_SNP [dm6]	T	G	2.812e^-4	0.639	INTRON CG44153
2L	10630463	2L_10630463_SNP [dm3] 2L_10630463_SNP [dm6]	T	C	2.816e^-4	0.639	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24235017	3R_24235017_SNP [dm3] 3R_28409295_SNP [dm6]	C	A	2.823e^-4	0.639	INTERGENIC
3R	14203161	3R_14203161_SNP [dm3] 3R_18377439_SNP [dm6]	C	G	2.825e^-4	0.639	DOWNSTREAM CR44946 & 1 other INTERGENIC
X	21075541	X_21075541_INS [dm3] X_21204514_INS [dm6]	C	CCGGACGGGAGGGGAC...	2.827e^-4	0.639	DOWNSTREAM CG32521 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1692768	3L_1692768_SNP [dm3] 3L_1692768_SNP [dm6]	T	G	2.840e^-4	0.639	INTRON CG7991	TF binding site mE1_TFBS_cad
3R	18097107	3R_18097107_DEL [dm3] 3R_22271385_DEL [dm6]	GG	G	2.840e^-4	0.639	INTRON SKIP
3R	17657428	3R_17657428_SNP [dm3] 3R_21831706_SNP [dm6]	A	T	2.847e^-4	0.639	UPSTREAM Gr93a INTERGENIC
X	17250781	X_17250781_INS [dm3] X_17356748_INS [dm6]	G	GTTCCTAACCATAAACGGAA...	2.850e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	18140149	3R_18140149_SNP [dm3] 3R_22314427_SNP [dm6]	A	G	2.854e^-4	0.639	INTRON CG34377
3R	20545440	3R_20545440_SNP [dm3] 3R_24719718_SNP [dm6]	C	T	2.855e^-4	0.639	UTR_5_PRIME tok UPSTREAM tok & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19118685	3R_19118685_SNP [dm3] 3R_23292963_SNP [dm6]	C	A	2.861e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19118620	3R_19118620_SNP [dm3] 3R_23292898_SNP [dm6]	C	T	2.863e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26129471	3R_26129471_SNP [dm3] 3R_30303749_SNP [dm6]	A	T	2.864e^-4	0.639	INTRON hdc
3R	15967709	3R_15967709_SNP [dm3] 3R_20141987_SNP [dm6]	T	C	2.865e^-4	0.639	INTERGENIC
3L	3408326	3L_3408326_SNP [dm3] 3L_3408326_SNP [dm6]	C	A	2.866e^-4	0.639	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	10893894	2L_10893894_SNP [dm3] 2L_10893894_SNP [dm6]	C	T	2.869e^-4	0.639	DOWNSTREAM CR44491 INTERGENIC
3L	12845904	3L_12845904_SNP [dm3] 3L_12852804_SNP [dm6]	T	C	2.869e^-4	0.639	SYNONYMOUS_CODING Wbp2 UTR_3_PRIME Wbp2 UPSTREAM Ent3 DOWNSTREAM Wbp2
3R	18422911	3R_18422911_SNP [dm3] 3R_22597189_SNP [dm6]	C	T	2.869e^-4	0.639	INTRON Efa6	TF binding site mE1_TFBS_HSA
3R	22618205	3R_22618205_SNP [dm3] 3R_26792483_SNP [dm6]	C	G	2.871e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	13905933	3R_13905933_SNP [dm3] 3R_18080211_SNP [dm6]	T	A	2.881e^-4	0.639	UPSTREAM CG14317 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15391834	3R_15391834_SNP [dm3] 3R_19566112_SNP [dm6]	T	A	2.886e^-4	0.639	INTRON Dys
X	11764876	X_11764876_SNP [dm3] X_11870843_SNP [dm6]	A	C	2.891e^-4	0.639	UTR_3_PRIME CG1847 DOWNSTREAM CG11802
3L	1392692	3L_1392692_SNP [dm3] 3L_1392692_SNP [dm6]	A	G	2.904e^-4	0.639	INTRON Ptp61F	TF binding site mE1_TFBS_cad
3R	22657121	3R_22657121_SNP [dm3] 3R_26831399_SNP [dm6]	C	A	2.905e^-4	0.639	INTRON Tl
3R	26408951	3R_26408951_SNP [dm3] 3R_30583229_SNP [dm6]	A	C	2.908e^-4	0.639	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	5389172	2L_5389172_SNP [dm3] 2L_5389172_SNP [dm6]	A	G	2.909e^-4	0.639	DOWNSTREAM CR44745 INTERGENIC
3R	15998627	3R_15998627_SNP [dm3] 3R_20172905_SNP [dm6]	T	C	2.913e^-4	0.639	INTRON CG5023
3R	17657282	3R_17657282_SNP [dm3] 3R_21831560_SNP [dm6]	C	A	2.915e^-4	0.639	UPSTREAM Gr93a INTERGENIC
3L	2883174	3L_2883174_SNP [dm3] 3L_2883174_SNP [dm6]	C	G	2.923e^-4	0.639	DOWNSTREAM spz5 EXON CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	6709515	X_6709515_SNP [dm3] X_6815482_SNP [dm6]	C	T	2.924e^-4	0.639	SPLICE_SITE_REGION iav INTRON iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23608716	3R_23608716_SNP [dm3] 3R_27782994_SNP [dm6]	G	T	2.937e^-4	0.639	INTRON CG34353
2L	9647765	2L_9647765_SNP [dm3] 2L_9647765_SNP [dm6]	G	T	2.942e^-4	0.639	SYNONYMOUS_CODING Apoltp
3R	19118679	3R_19118679_SNP [dm3] 3R_23292957_SNP [dm6]	C	T	2.947e^-4	0.639	INTRON pnt	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	27002859	3R_27002859_SNP [dm3] 3R_31177137_SNP [dm6]	G	A	2.951e^-4	0.639	INTRON Gycbeta100B
2L	11191273	2L_11191273_SNP [dm3] 2L_11191273_SNP [dm6]	A	G	2.953e^-4	0.639	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	1777389	3R_1777389_SNP [dm3] 3R_5951667_SNP [dm6]	C	A	2.954e^-4	0.639	INTRON CG34113
3R	13275447	3R_13275447_SNP [dm3] 3R_17449725_SNP [dm6]	G	A	2.960e^-4	0.639	UPSTREAM Eh INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	13275455	3R_13275455_SNP [dm3] 3R_17449733_SNP [dm6]	T	A	2.960e^-4	0.639	UPSTREAM Eh INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17557216	3R_17557216_SNP [dm3] 3R_21731494_SNP [dm6]	T	C	2.962e^-4	0.639	INTERGENIC
2R	16588854	2R_16588854_INS [dm3] 2R_20701349_INS [dm6]	G	GAACATTGG	2.963e^-4	0.639	INTRON dpr
2R	18090515	2R_18090515_SNP [dm3] 2R_22203010_SNP [dm6]	A	G	2.969e^-4	0.639	UPSTREAM Swim DOWNSTREAM CG3292 EXON CR45376
3R	18943813	3R_18943813_SNP [dm3] 3R_23118091_SNP [dm6]	G	A	2.972e^-4	0.639	UPSTREAM CenB1A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	2883006	3L_2883006_SNP [dm3] 3L_2883006_SNP [dm6]	C	T	2.975e^-4	0.639	DOWNSTREAM spz5 EXON CR44531	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	18359082	3R_18359082_SNP [dm3] 3R_22533360_SNP [dm6]	G	A	2.986e^-4	0.639	SYNONYMOUS_CODING CG5326
2R	15434886	2R_15434886_SNP [dm3] 2R_19547381_SNP [dm6]	A	G	2.993e^-4	0.639	UPSTREAM sm INTRON sm
3R	27127329	3R_27127329_SNP [dm3] 3R_31301607_SNP [dm6]	C	T	2.994e^-4	0.639	DOWNSTREAM CG11340 INTERGENIC	TF binding site mE1_TFBS_inv
X	19686365	X_19686365_SNP [dm3] X_19792332_SNP [dm6]	T	C	2.998e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12270752	2R_12270752_SNP [dm3] 2R_16383247_SNP [dm6]	T	C	2.999e^-4	0.639	UTR_3_PRIME CG43187	transposable element FlyBase
3R	20294760	3R_20294760_SNP [dm3] 3R_24469038_SNP [dm6]	C	T	3.004e^-4	0.639	UPSTREAM CG31128 INTERGENIC
3R	16686211	3R_16686211_SNP [dm3] 3R_20860489_SNP [dm6]	C	G	3.008e^-4	0.639	UTR_3_PRIME CG3822 UPSTREAM Ir93a
3R	17831434	3R_17831434_SNP [dm3] 3R_22005712_SNP [dm6]	C	A	3.008e^-4	0.639	SYNONYMOUS_CODING Eip93F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	10608326	3R_10608326_SNP [dm3] 3R_14782604_SNP [dm6]	T	C	3.012e^-4	0.639	INTRON jvl
3R	25252560	3R_25252560_DEL [dm3] 3R_29426838_DEL [dm6]	TT	T	3.013e^-4	0.639	INTRON Ptp99A
2L	13910512	2L_13910512_SNP [dm3] 2L_13910512_SNP [dm6]	G	C	3.024e^-4	0.639	NON_SYNONYMOUS_CODING Ance-2	TF binding site mE1_TFBS_cad
3R	25056219	3R_25056219_SNP [dm3] 3R_29230497_SNP [dm6]	A	T	3.029e^-4	0.639	NON_SYNONYMOUS_CODING CG15817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	25056225	3R_25056225_SNP [dm3] 3R_29230503_SNP [dm6]	A	T	3.029e^-4	0.639	SYNONYMOUS_CODING CG15817	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	11259705	2R_11259705_SNP [dm3] 2R_15372200_SNP [dm6]	C	T	3.029e^-4	0.639	UPSTREAM Pms2 EXON CR44458 & 1 other	TF binding site mE1_TFBS_ttk
3R	21488838	3R_21488838_SNP [dm3] 3R_25663116_SNP [dm6]	G	C	3.032e^-4	0.639	UPSTREAM CR45208 INTRON RASSF8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	1199748	3L_1199748_SNP [dm3] 3L_1199748_SNP [dm6]	A	G	3.035e^-4	0.639	DOWNSTREAM Aplip1 INTERGENIC
2R	9313708	2R_9313708_SNP [dm3] 2R_13426203_SNP [dm6]	G	T	3.037e^-4	0.639	UTR_5_PRIME CG42321 INTRON CG42321	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	23325639	3R_23325639_SNP [dm3] 3R_27499917_SNP [dm6]	T	G	3.048e^-4	0.639	INTERGENIC
2L	13809897	2L_13809897_SNP [dm3] 2L_13809897_SNP [dm6]	C	T	3.055e^-4	0.639	UTR_3_PRIME adat & 1 other DOWNSTREAM adat
3R	17404603	3R_17404603_SNP [dm3] 3R_21578881_SNP [dm6]	T	G	3.055e^-4	0.639	NON_SYNONYMOUS_CODING InR	TF binding site mE1_TFBS_sens
3R	18371283	3R_18371283_SNP [dm3] 3R_22545561_SNP [dm6]	C	A	3.057e^-4	0.639	INTRON AdipoR
3R	18460096	3R_18460096_SNP [dm3] 3R_22634374_SNP [dm6]	C	A	3.057e^-4	0.639	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	26663587	3R_26663587_SNP [dm3] 3R_30837865_SNP [dm6]	C	T	3.058e^-4	0.639	INTRON CG15544
2R	13378236	2R_13378236_SNP [dm3] 2R_17490731_SNP [dm6]	A	C	3.061e^-4	0.639	INTRON NT5E-2
3R	18741445	3R_18741445_SNP [dm3] 3R_22915723_SNP [dm6]	C	T	3.066e^-4	0.639	INTRON klg
3R	19963372	3R_19963372_SNP [dm3] 3R_24137650_SNP [dm6]	C	A	3.073e^-4	0.639	UPSTREAM Npc2f DOWNSTREAM Sec10 INTERGENIC
3R	20146347	3R_20146347_SNP [dm3] 3R_24320625_SNP [dm6]	C	T	3.073e^-4	0.639	INTRON BRWD3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7592211	X_7592211_SNP [dm3] X_7698178_SNP [dm6]	G	A	3.076e^-4	0.639	INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	23216379	3R_23216379_SNP [dm3] 3R_27390657_SNP [dm6]	A	C	3.080e^-4	0.639	INTRON side
2L	10449544	2L_10449544_SNP [dm3] 2L_10449544_SNP [dm6]	A	T	3.084e^-4	0.639	DOWNSTREAM ppk10 INTRON loh	TF binding site mE1_TFBS_cad
3R	20536657	3R_20536657_SNP [dm3] 3R_24710935_SNP [dm6]	A	C	3.093e^-4	0.639	UTR_3_PRIME slo
2L	3099420	2L_3099420_SNP [dm3] 2L_3099420_SNP [dm6]	G	A	3.093e^-4	0.639	INTRON toc
3R	9237851	3R_9237851_SNP [dm3] 3R_13412129_SNP [dm6]	A	T	3.100e^-4	0.639	INTRON yellow-e
2R	4148334	2R_4148334_SNP [dm3] 2R_8260829_SNP [dm6]	T	A	3.106e^-4	0.639	UTR_3_PRIME CG2291 DOWNSTREAM CG14759
3R	19882143	3R_19882143_SNP [dm3] 3R_24056421_SNP [dm6]	G	A	3.109e^-4	0.639	SYNONYMOUS_CODING Hsp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8291132	2R_8291132_SNP [dm3] 2R_12403627_SNP [dm6]	A	T	3.110e^-4	0.639	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3L	13209909	3L_13209909_SNP [dm3] 3L_13216809_SNP [dm6]	T	A	3.111e^-4	0.639	EXON CR43914	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	14857655	X_14857655_SNP [dm3] X_14963622_SNP [dm6]	G	T	3.111e^-4	0.639	INTRON eag
2L	1549610	2L_1549610_SNP [dm3] 2L_1549610_SNP [dm6]	A	G	3.113e^-4	0.639	INTERGENIC
3R	18320446	3R_18320446_SNP [dm3] 3R_22494724_SNP [dm6]	A	T	3.114e^-4	0.639	DOWNSTREAM CG7046 INTERGENIC
3R	23611241	3R_23611241_SNP [dm3] 3R_27785519_SNP [dm6]	G	A	3.114e^-4	0.639	INTRON CG34353
3R	17848046	3R_17848046_SNP [dm3] 3R_22022324_SNP [dm6]	A	C	3.119e^-4	0.639	INTRON CG6455	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2R	15063048	2R_15063048_SNP [dm3] 2R_19175543_SNP [dm6]	A	T	3.126e^-4	0.639	INTRON CG10737
3R	20542820	3R_20542820_SNP [dm3] 3R_24717098_SNP [dm6]	A	C	3.132e^-4	0.639	UPSTREAM Rpb10 DOWNSTREAM CG13630 INTRON CG13627	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	19614210	3R_19614210_SNP [dm3] 3R_23788488_SNP [dm6]	T	C	3.138e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	26079465	3R_26079465_SNP [dm3] 3R_30253743_SNP [dm6]	A	T	3.142e^-4	0.639	DOWNSTREAM CG9682 INTRON CG18404
2L	8102899	2L_8102899_SNP [dm3] 2L_8102899_SNP [dm6]	C	T	3.146e^-4	0.639	SYNONYMOUS_CODING Bsg INTRON Bsg	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15774953	3R_15774953_SNP [dm3] 3R_19949231_SNP [dm6]	T	A	3.153e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
3R	20543214	3R_20543214_SNP [dm3] 3R_24717492_SNP [dm6]	G	C	3.155e^-4	0.639	UPSTREAM Rpb10 DOWNSTREAM CG13630 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	14077401	2L_14077401_SNP [dm3] 2L_14077401_SNP [dm6]	T	C	3.156e^-4	0.639	INTRON nAChRalpha5
3R	15119313	3R_15119313_SNP [dm3] 3R_19293591_SNP [dm6]	T	A	3.158e^-4	0.639	INTERGENIC
3R	20137756	3R_20137756_SNP [dm3] 3R_24312034_SNP [dm6]	G	A	3.170e^-4	0.639	SYNONYMOUS_CODING crb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25824407	3R_25824407_SNP [dm3] 3R_29998685_SNP [dm6]	G	T	3.170e^-4	0.639	NON_SYNONYMOUS_CODING CG11504	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	19440252	3R_19440252_SNP [dm3] 3R_23614530_SNP [dm6]	G	T	3.172e^-4	0.639	INTRON CG31145
3R	17617110	3R_17617110_SNP [dm3] 3R_21791388_SNP [dm6]	C	T	3.181e^-4	0.639	INTRON CASK
3R	25100402	3R_25100402_SNP [dm3] 3R_29274680_SNP [dm6]	C	A	3.181e^-4	0.639	INTERGENIC	regulatory region REDfly_CRMs
3R	23325711	3R_23325711_SNP [dm3] 3R_27499989_SNP [dm6]	C	A	3.182e^-4	0.639	INTERGENIC
3R	26496219	3R_26496219_INS [dm3] 3R_30670497_INS [dm6]	G	GG	3.191e^-4	0.639	INTERGENIC
X	3971519	X_3971519_SNP [dm3] X_4077486_SNP [dm6]	T	A	3.197e^-4	0.639	INTRON CG43689
X	3971525	X_3971525_SNP [dm3] X_4077492_SNP [dm6]	A	G	3.197e^-4	0.639	INTRON CG43689
3R	11543044	3R_11543044_SNP [dm3] 3R_15717322_SNP [dm6]	T	C	3.198e^-4	0.639	UPSTREAM CG31294 INTERGENIC
3R	20354293	3R_20354293_SNP [dm3] 3R_24528571_SNP [dm6]	G	T	3.220e^-4	0.639	NON_SYNONYMOUS_CODING CG6607	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2375223	3L_2375223_SNP [dm3] 3L_2375223_SNP [dm6]	C	T	3.223e^-4	0.639	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24552626	3R_24552626_SNP [dm3] 3R_28726904_SNP [dm6]	C	G	3.226e^-4	0.639	INTRON htt	TF binding site mE1_TFBS_chinmo
3R	26408921	3R_26408921_SNP [dm3] 3R_30583199_SNP [dm6]	T	C	3.231e^-4	0.639	SYNONYMOUS_CODING Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	16756436	2L_16756436_SNP [dm3] 2L_16756436_SNP [dm6]	G	A	3.234e^-4	0.639	INTRON yellow-b
3R	17504042	3R_17504042_SNP [dm3] 3R_21678320_SNP [dm6]	G	T	3.255e^-4	0.639	INTRON CG31176
3R	23609101	3R_23609101_SNP [dm3] 3R_27783379_SNP [dm6]	C	T	3.255e^-4	0.639	INTRON CG34353
2R	9814294	2R_9814294_DEL [dm3] 2R_13926789_DEL [dm6]	AA	A	3.259e^-4	0.639	INTRON shot	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26333635	3R_26333635_DEL [dm3] 3R_30507913_DEL [dm6]	TTTTTAGGAGGCCCT...	T	3.264e^-4	0.639	FRAME_SHIFT CG15539 UPSTREAM CG34041
3R	16984803	3R_16984803_SNP [dm3] 3R_21159081_SNP [dm6]	A	G	3.274e^-4	0.639	DOWNSTREAM CG10824 INTRON SNF4Agamma
3R	18359085	3R_18359085_SNP [dm3] 3R_22533363_SNP [dm6]	A	G	3.279e^-4	0.639	SYNONYMOUS_CODING CG5326
3R	19466146	3R_19466146_SNP [dm3] 3R_23640424_SNP [dm6]	C	T	3.282e^-4	0.639	INTRON CG31145
3L	2375222	3L_2375222_SNP [dm3] 3L_2375222_SNP [dm6]	C	T	3.292e^-4	0.639	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3845082	2L_3845082_SNP [dm3] 2L_3845082_SNP [dm6]	T	A	3.300e^-4	0.639	DOWNSTREAM CR44983 INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18090687	3R_18090687_SNP [dm3] 3R_22264965_SNP [dm6]	A	T	3.300e^-4	0.639	INTRON SKIP
3R	19688355	3R_19688355_SNP [dm3] 3R_23862633_SNP [dm6]	G	A	3.303e^-4	0.639	SYNONYMOUS_CODING Pli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20541155	3R_20541155_SNP [dm3] 3R_24715433_SNP [dm6]	G	T	3.315e^-4	0.639	NON_SYNONYMOUS_CODING CG13627	TF binding site mE1_TFBS_chinmo
3R	23484167	3R_23484167_SNP [dm3] 3R_27658445_SNP [dm6]	A	C	3.317e^-4	0.639	INTRON Mlc1	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	26411566	3R_26411566_SNP [dm3] 3R_30585844_SNP [dm6]	A	T	3.320e^-4	0.639	INTRON CG9717
3R	26411574	3R_26411574_SNP [dm3] 3R_30585852_SNP [dm6]	T	C	3.320e^-4	0.639	INTRON CG9717
3R	26411576	3R_26411576_SNP [dm3] 3R_30585854_SNP [dm6]	A	T	3.320e^-4	0.639	INTRON CG9717
3L	6055139	3L_6055139_SNP [dm3] 3L_6062039_SNP [dm6]	T	C	3.325e^-4	0.639	DOWNSTREAM CG6592 INTRON CG10472
3R	15968955	3R_15968955_SNP [dm3] 3R_20143233_SNP [dm6]	A	T	3.327e^-4	0.639	INTERGENIC
3R	19540156	3R_19540156_SNP [dm3] 3R_23714434_SNP [dm6]	C	A	3.329e^-4	0.639	INTRON nau
3R	22713957	3R_22713957_SNP [dm3] 3R_26888235_SNP [dm6]	T	C	3.330e^-4	0.639	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	22713959	3R_22713959_SNP [dm3] 3R_26888237_SNP [dm6]	C	T	3.330e^-4	0.639	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19907300	3R_19907300_SNP [dm3] 3R_24081578_SNP [dm6]	C	G	3.333e^-4	0.639	INTRON 4EHP
2L	12161096	2L_12161096_SNP [dm3] 2L_12161096_SNP [dm6]	T	G	3.336e^-4	0.639	UPSTREAM CG31861 INTRON CG31760
3L	10733144	3L_10733144_SNP [dm3] 3L_10740044_SNP [dm6]	G	T	3.341e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	17734881	X_17734881_SNP [dm3] X_17840848_SNP [dm6]	T	C	3.343e^-4	0.639	SYNONYMOUS_CODING CG6398	TF binding site mE1_TFBS_sens
2R	7655490	2R_7655490_SNP [dm3] 2R_11767985_SNP [dm6]	A	C	3.345e^-4	0.639	UPSTREAM CG13193 INTRON ths
3R	19345346	3R_19345346_SNP [dm3] 3R_23519624_SNP [dm6]	G	A	3.349e^-4	0.639	UPSTREAM Irk2 DOWNSTREAM CG10177 INTERGENIC
3R	20500041	3R_20500041_INS [dm3] 3R_24674319_INS [dm6]	T	TATAGCT	3.360e^-4	0.639	INTRON slo
2R	11473834	2R_11473834_SNP [dm3] 2R_15586329_SNP [dm6]	T	C	3.362e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25324237	3R_25324237_SNP [dm3] 3R_29498515_SNP [dm6]	T	C	3.363e^-4	0.639	DOWNSTREAM Trc8 INTRON CG2010	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	24068525	3R_24068525_SNP [dm3] 3R_28242803_SNP [dm6]	C	A	3.369e^-4	0.639	INTERGENIC
3R	17069308	3R_17069308_SNP [dm3] 3R_21243586_SNP [dm6]	A	G	3.370e^-4	0.639	SYNONYMOUS_CODING CG5892
3R	27167010	3R_27167010_SNP [dm3] 3R_31341288_SNP [dm6]	G	C	3.371e^-4	0.639	INTRON CG34347
3R	15233088	3R_15233088_SNP [dm3] 3R_19407366_SNP [dm6]	T	G	3.377e^-4	0.639	INTERGENIC
X	20185345	X_20185345_SNP [dm3] X_20314318_SNP [dm6]	C	T	3.381e^-4	0.639	INTRON CG1504
3R	25806738	3R_25806738_SNP [dm3] 3R_29981016_SNP [dm6]	C	T	3.390e^-4	0.639	INTERGENIC
3R	19540626	3R_19540626_SNP [dm3] 3R_23714904_SNP [dm6]	C	A	3.392e^-4	0.639	INTRON nau
3R	19540627	3R_19540627_SNP [dm3] 3R_23714905_SNP [dm6]	A	C	3.392e^-4	0.639	INTRON nau
2L	14940331	2L_14940331_SNP [dm3] 2L_14940331_SNP [dm6]	G	A	3.398e^-4	0.639	INTRON CG42313	TF binding site mE1_TFBS_inv
3R	26326806	3R_26326806_SNP [dm3] 3R_30501084_SNP [dm6]	A	G	3.404e^-4	0.639	UPSTREAM PH4alphaNE1 DOWNSTREAM CG31371 INTERGENIC	TF binding site mE1_TFBS_cad
3L	14358966	3L_14358966_SNP [dm3] 3L_14365866_SNP [dm6]	G	T	3.406e^-4	0.639	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18427600	3L_18427600_SNP [dm3] 3L_18434500_SNP [dm6]	T	C	3.413e^-4	0.639	INTERGENIC
3R	26671197	3R_26671197_SNP [dm3] 3R_30845475_SNP [dm6]	C	T	3.414e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	4108959	2L_4108959_SNP [dm3] 2L_4108959_SNP [dm6]	T	G	3.424e^-4	0.639	INTRON ed
2R	8286953	2R_8286953_SNP [dm3] 2R_12399448_SNP [dm6]	A	T	3.429e^-4	0.639	DOWNSTREAM CG30048 INTERGENIC
3R	17370034	3R_17370034_SNP [dm3] 3R_21544312_SNP [dm6]	C	T	3.433e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26824267	3R_26824267_SNP [dm3] 3R_30998545_SNP [dm6]	T	C	3.438e^-4	0.639	INTRON 5-HT7
3R	1797062	3R_1797062_SNP [dm3] 3R_5971340_SNP [dm6]	T	G	3.447e^-4	0.639	DOWNSTREAM CR44926 & 1 other INTERGENIC
2R	19882150	2R_19882150_SNP [dm3] 2R_23994627_SNP [dm6]	T	G	3.450e^-4	0.639	UTR_5_PRIME CG3860 DOWNSTREAM Unc-89
3L	7534188	3L_7534188_SNP [dm3] 3L_7541088_SNP [dm6]	A	G	3.454e^-4	0.639	SYNONYMOUS_CODING CG32374 DOWNSTREAM CG32376
3R	17849936	3R_17849936_SNP [dm3] 3R_22024214_SNP [dm6]	C	T	3.456e^-4	0.639	UTR_3_PRIME mRpL35 UPSTREAM CG6455 DOWNSTREAM CG6028	TF binding site BDTNP1_TFBS_dl
3R	19832585	3R_19832585_SNP [dm3] 3R_24006863_SNP [dm6]	T	C	3.464e^-4	0.639	UPSTREAM KrT95D INTRON KrT95D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	3031656	3L_3031656_SNP [dm3] 3L_3031656_SNP [dm6]	G	A	3.469e^-4	0.639	INTERGENIC
3R	18280485	3R_18280485_SNP [dm3] 3R_22454763_SNP [dm6]	A	G	3.471e^-4	0.639	INTRON CG34376	TF binding site mE1_TFBS_cad
X	20477139	X_20477139_DEL [dm3] X_20606112_DEL [dm6]	ATACCTTAAAAATT...	A	3.474e^-4	0.639	INTRON RunxA
3L	3409247	3L_3409247_SNP [dm3] 3L_3409247_SNP [dm6]	G	A	3.475e^-4	0.639	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24958518	3R_24958518_SNP [dm3] 3R_29132796_SNP [dm6]	C	A	3.482e^-4	0.639	INTRON Vha100-1
3R	16686168	3R_16686168_SNP [dm3] 3R_20860446_SNP [dm6]	T	C	3.482e^-4	0.639	UTR_3_PRIME CG3822 UPSTREAM Ir93a
3R	17292190	3R_17292190_SNP [dm3] 3R_21466468_SNP [dm6]	G	A	3.484e^-4	0.639	EXON CR43453	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18022528	2R_18022528_SNP [dm3] 2R_22135023_SNP [dm6]	A	T	3.485e^-4	0.639	INTERGENIC
3R	12626882	3R_12626882_SNP [dm3] 3R_16801160_SNP [dm6]	A	G	3.488e^-4	0.639	UPSTREAM CR45751 EXON CR45750	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl
2R	12248032	2R_12248032_SNP [dm3] 2R_16360527_SNP [dm6]	A	G	3.488e^-4	0.639	SYNONYMOUS_CODING CG6262 UTR_5_PRIME CG6262	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14566041	2L_14566041_SNP [dm3] 2L_14566041_SNP [dm6]	G	A	3.489e^-4	0.639	INTERGENIC
3R	23979544	3R_23979544_SNP [dm3] 3R_28153822_SNP [dm6]	G	T	3.495e^-4	0.639	INTRON CG34354
3R	26987417	3R_26987417_SNP [dm3] 3R_31161695_SNP [dm6]	G	A	3.496e^-4	0.639	INTRON Gycbeta100B & 1 other
3R	25720510	3R_25720510_SNP [dm3] 3R_29894788_SNP [dm6]	G	A	3.515e^-4	0.639	UPSTREAM CG31038 INTRON CG31038	TF binding site BDTNP1_TFBS_twi
3R	25050872	3R_25050872_SNP [dm3] 3R_29225150_SNP [dm6]	C	T	3.517e^-4	0.639	SYNONYMOUS_CODING Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15508797	2L_15508797_SNP [dm3] 2L_15508797_SNP [dm6]	A	G	3.519e^-4	0.639	INTERGENIC
3R	19615866	3R_19615866_DEL [dm3] 3R_23790144_DEL [dm6]	TTG	A	3.519e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11246743	3L_11246743_SNP [dm3] 3L_11253643_SNP [dm6]	C	T	3.529e^-4	0.639	INTRON scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	9921073	2L_9921073_SNP [dm3] 2L_9921073_SNP [dm6]	A	G	3.531e^-4	0.639	NON_SYNONYMOUS_CODING CG4594 UPSTREAM CG4592 DOWNSTREAM CG4598
X	3963472	X_3963472_SNP [dm3] X_4069439_SNP [dm6]	T	C	3.536e^-4	0.639	INTERGENIC
X	2578401	X_2578401_SNP [dm3] X_2684368_SNP [dm6]	C	A	3.555e^-4	0.639	UPSTREAM CR44470 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2R	17776513	2R_17776513_SNP [dm3] 2R_21889008_SNP [dm6]	A	G	3.556e^-4	0.639	INTRON Fili	insulator Insulator_Class_I.mE01
3R	21252050	3R_21252050_SNP [dm3] 3R_25426328_SNP [dm6]	T	C	3.561e^-4	0.639	INTRON Fur1
3R	20038665	3R_20038665_SNP [dm3] 3R_24212943_SNP [dm6]	C	G	3.564e^-4	0.639	INTRON twin
3R	10961750	3R_10961750_SNP [dm3] 3R_15136028_SNP [dm6]	C	T	3.565e^-4	0.639	SYNONYMOUS_CODING CG6912 DOWNSTREAM CR45600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	26409313	3R_26409313_SNP [dm3] 3R_30583591_SNP [dm6]	C	T	3.569e^-4	0.639	UTR_5_PRIME Rpt6R DOWNSTREAM CG9717	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	5719629	2L_5719629_SNP [dm3] 2L_5719629_SNP [dm6]	G	A	3.575e^-4	0.639	SYNONYMOUS_CODING CG11149
3R	17653963	3R_17653963_SNP [dm3] 3R_21828241_SNP [dm6]	G	A	3.598e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	17653983	3R_17653983_SNP [dm3] 3R_21828261_SNP [dm6]	G	T	3.598e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3R	25308506	3R_25308506_SNP [dm3] 3R_29482784_SNP [dm6]	C	A	3.607e^-4	0.639	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad
3R	17984185	3R_17984185_SNP [dm3] 3R_22158463_SNP [dm6]	T	C	3.611e^-4	0.639	INTRON SKIP	TF binding site BDTNP1_TFBS_da
3R	17984368	3R_17984368_SNP [dm3] 3R_22158646_SNP [dm6]	A	G	3.611e^-4	0.639	INTRON SKIP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	15774958	3R_15774958_DEL [dm3] 3R_19949236_DEL [dm6]	GGTGACGCCAAG...	G	3.612e^-4	0.639	DOWNSTREAM CG4783 INTRON Hs6st
3R	19614153	3R_19614153_SNP [dm3] 3R_23788431_SNP [dm6]	T	G	3.621e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	19614155	3R_19614155_INS [dm3] 3R_23788433_INS [dm6]	G	AA	3.621e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	26406034	3R_26406034_SNP [dm3] 3R_30580312_SNP [dm6]	A	G	3.631e^-4	0.639	INTRON CG9702	TF binding site mE1_TFBS_HSA
2R	1599308	2R_1599308_DEL [dm3] 2R_5711803_DEL [dm6]	GG	G	3.636e^-4	0.639	INTRON ap	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	13204251	3R_13204251_SNP [dm3] 3R_17378529_SNP [dm6]	A	T	3.651e^-4	0.639	INTRON Brf
3R	26370431	3R_26370431_DEL [dm3] 3R_30544709_DEL [dm6]	ACTTGGATTTCCTTTGTGAA...	A	3.656e^-4	0.639	INTRON tmod
3L	6055306	3L_6055306_SNP [dm3] 3L_6062206_SNP [dm6]	A	G	3.658e^-4	0.639	DOWNSTREAM CG6592 INTRON CG10472	TF binding site mE1_TFBS_cad
3R	10961794	3R_10961794_SNP [dm3] 3R_15136072_SNP [dm6]	C	T	3.660e^-4	0.639	NON_SYNONYMOUS_CODING CG6912 DOWNSTREAM CR45600	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	27141644	3R_27141644_SNP [dm3] 3R_31315922_SNP [dm6]	G	T	3.666e^-4	0.639	INTRON CG34347
2R	13296209	2R_13296209_SNP [dm3] 2R_17408704_SNP [dm6]	T	G	3.672e^-4	0.639	UTR_3_PRIME CG30101
3L	12680392	3L_12680392_SNP [dm3] 3L_12687292_SNP [dm6]	T	C	3.678e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16992021	3R_16992021_SNP [dm3] 3R_21166299_SNP [dm6]	T	G	3.691e^-4	0.639	INTRON SNF4Agamma & 1 other
3L	2564504	3L_2564504_SNP [dm3] 3L_2564504_SNP [dm6]	A	G	3.693e^-4	0.639	SYNONYMOUS_CODING msn
2R	13378685	2R_13378685_SNP [dm3] 2R_17491180_SNP [dm6]	C	G	3.696e^-4	0.639	INTRON NT5E-2
2L	2911690	2L_2911690_SNP [dm3] 2L_2911690_SNP [dm6]	T	G	3.700e^-4	0.639	INTRON lilli
3R	25308199	3R_25308199_SNP [dm3] 3R_29482477_SNP [dm6]	T	A	3.705e^-4	0.639	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3R	17654042	3R_17654042_SNP [dm3] 3R_21828320_SNP [dm6]	A	T	3.709e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	17108133	3L_17108133_INS [dm3] 3L_17115033_INS [dm6]	A	AT	3.709e^-4	0.639	INTRON Rbp6
3R	20542830	3R_20542830_SNP [dm3] 3R_24717108_SNP [dm6]	T	G	3.712e^-4	0.639	UPSTREAM Rpb10 DOWNSTREAM CG13630 INTRON CG13627	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	18479276	3R_18479276_SNP [dm3] 3R_22653554_SNP [dm6]	T	C	3.714e^-4	0.639	INTRON CG45058	TF binding site mE1_TFBS_chinmo
3R	10608550	3R_10608550_SNP [dm3] 3R_14782828_SNP [dm6]	C	T	3.715e^-4	0.639	INTRON jvl
2R	6450005	2R_6450005_INS [dm3] 2R_10562500_INS [dm6]	T	TGAAA	3.718e^-4	0.639	INTRON psq	TF binding site BDTNP1_TFBS_twi
3R	18747568	3R_18747568_SNP [dm3] 3R_22921846_SNP [dm6]	A	T	3.722e^-4	0.639	INTRON klg	TF binding site mE1_TFBS_chinmo
3R	19969588	3R_19969588_SNP [dm3] 3R_24143866_SNP [dm6]	C	T	3.731e^-4	0.639	INTRON Kal1
2L	13749165	2L_13749165_SNP [dm3] 2L_13749165_SNP [dm6]	A	T	3.734e^-4	0.639	INTRON CR44846 & 1 other	TF binding site BDTNP1_TFBS_twi
3R	25400576	3R_25400576_INS [dm3] 3R_29574854_INS [dm6]	A	ACGGCCA	3.740e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	12088686	2L_12088686_SNP [dm3] 2L_12088686_SNP [dm6]	C	A	3.758e^-4	0.639	DOWNSTREAM CR44593 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13460622	3R_13460622_SNP [dm3] 3R_17634900_SNP [dm6]	G	A	3.761e^-4	0.639	INTRON CG43175
3R	17414602	3R_17414602_SNP [dm3] 3R_21588880_SNP [dm6]	T	C	3.765e^-4	0.639	INTRON InR
3R	26299997	3R_26299997_INS [dm3] 3R_30474275_INS [dm6]	A	AA	3.767e^-4	0.639	INTRON PH4alphaEFB	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	20567445	3R_20567445_SNP [dm3] 3R_24741723_SNP [dm6]	C	T	3.779e^-4	0.639	INTRON tok
3R	15401497	3R_15401497_DEL [dm3] 3R_19575775_DEL [dm6]	TCCTTAT	T	3.802e^-4	0.639	INTRON Dys
X	21199539	X_21199539_SNP [dm3] X_21328512_SNP [dm6]	T	A	3.804e^-4	0.639	DOWNSTREAM tty & 1 other INTERGENIC
3R	20618870	3R_20618870_SNP [dm3] 3R_24793148_SNP [dm6]	G	A	3.806e^-4	0.639	NON_SYNONYMOUS_CODING Ets96B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13372983	2R_13372983_SNP [dm3] 2R_17485478_SNP [dm6]	C	T	3.811e^-4	0.639	UTR_5_PRIME CG43110 INTRON NT5E-2
3R	25048885	3R_25048885_SNP [dm3] 3R_29223163_SNP [dm6]	G	T	3.813e^-4	0.639	UPSTREAM Brd8 INTRON CG1458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
3R	15233117	3R_15233117_SNP [dm3] 3R_19407395_SNP [dm6]	A	T	3.813e^-4	0.639	INTERGENIC
3R	18524106	3R_18524106_SNP [dm3] 3R_22698384_SNP [dm6]	A	T	3.820e^-4	0.639	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	16228658	2R_16228658_SNP [dm3] 2R_20341153_SNP [dm6]	C	T	3.822e^-4	0.639	UPSTREAM CG16739 INTERGENIC
3R	26278082	3R_26278082_SNP [dm3] 3R_30452360_SNP [dm6]	G	A	3.826e^-4	0.639	INTRON aralar1
3R	18541814	3R_18541814_SNP [dm3] 3R_22716092_SNP [dm6]	C	T	3.840e^-4	0.639	NON_SYNONYMOUS_CODING wge	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26484132	3R_26484132_SNP [dm3] 3R_30658410_SNP [dm6]	G	T	3.844e^-4	0.639	INTERGENIC
2R	18501613	2R_18501613_SNP [dm3] 2R_22614108_SNP [dm6]	G	C	3.850e^-4	0.639	UPSTREAM CG33143 & 1 other INTERGENIC
3R	19625240	3R_19625240_DEL [dm3] 3R_23799518_DEL [dm6]	TGTT	T	3.856e^-4	0.639	INTRON mbc
3R	27085131	3R_27085131_SNP [dm3] 3R_31259409_SNP [dm6]	A	T	3.857e^-4	0.639	UPSTREAM CG18672 INTRON CG3669
2L	3263189	2L_3263189_SNP [dm3] 2L_3263189_SNP [dm6]	T	C	3.861e^-4	0.639	DOWNSTREAM CR45706 INTERGENIC
3R	26670808	3R_26670808_SNP [dm3] 3R_30845086_SNP [dm6]	A	C	3.863e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	10483724	3R_10483724_SNP [dm3] 3R_14658002_SNP [dm6]	C	T	3.868e^-4	0.639	INTRON CG3505	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad
2L	14925769	2L_14925769_SNP [dm3] 2L_14925769_SNP [dm6]	T	G	3.869e^-4	0.639	NON_SYNONYMOUS_CODING CG3491 INTRON CG42313
2L	14925790	2L_14925790_SNP [dm3] 2L_14925790_SNP [dm6]	T	C	3.869e^-4	0.639	SYNONYMOUS_CODING CG3491 INTRON CG42313
3R	19883882	3R_19883882_SNP [dm3] 3R_24058160_SNP [dm6]	T	C	3.872e^-4	0.639	UPSTREAM SMC1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23444165	3R_23444165_DEL [dm3] 3R_27618443_DEL [dm6]	GG	G	3.875e^-4	0.639	INTRON Tusp
3R	25228676	3R_25228676_SNP [dm3] 3R_29402954_SNP [dm6]	A	G	3.894e^-4	0.639	INTRON Ptp99A
3R	19614115	3R_19614115_SNP [dm3] 3R_23788393_SNP [dm6]	A	G	3.907e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3L	16199960	3L_16199960_SNP [dm3] 3L_16206860_SNP [dm6]	G	A	3.910e^-4	0.639	INTERGENIC
3R	17541585	3R_17541585_SNP [dm3] 3R_21715863_SNP [dm6]	C	T	3.910e^-4	0.639	INTRON CG31176
3L	19681220	3L_19681220_SNP [dm3] 3L_19688120_SNP [dm6]	G	T	3.912e^-4	0.639	UPSTREAM CG8765 INTRON Gbeta76C	TF binding site mE1_TFBS_cad
2R	13952185	2R_13952185_SNP [dm3] 2R_18064680_SNP [dm6]	T	C	3.923e^-4	0.639	INTRON CG34386
2L	14746818	2L_14746818_SNP [dm3] 2L_14746818_SNP [dm6]	G	C	3.925e^-4	0.639	DOWNSTREAM CR45459 EXON CR45458
3R	19498614	3R_19498614_SNP [dm3] 3R_23672892_SNP [dm6]	T	A	3.928e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12678621	2R_12678621_SNP [dm3] 2R_16791116_SNP [dm6]	A	G	3.935e^-4	0.639	NON_SYNONYMOUS_CODING CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	20544128	3R_20544128_SNP [dm3] 3R_24718406_SNP [dm6]	T	A	3.937e^-4	0.639	SYNONYMOUS_CODING CG13630 DOWNSTREAM CG13627 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6813208	2L_6813208_SNP [dm3] 2L_6813208_SNP [dm6]	C	A	3.939e^-4	0.639	DOWNSTREAM CR44081 INTERGENIC
3R	25801574	3R_25801574_SNP [dm3] 3R_29975852_SNP [dm6]	T	A	3.945e^-4	0.639	INTERGENIC
3L	7220247	3L_7220247_SNP [dm3] 3L_7227147_SNP [dm6]	G	T	3.950e^-4	0.639	INTERGENIC
X	5043182	X_5043182_SNP [dm3] X_5149149_SNP [dm6]	A	C	3.955e^-4	0.639	INTRON rg & 1 other
3R	22910344	3R_22910344_SNP [dm3] 3R_27084622_SNP [dm6]	C	T	3.955e^-4	0.639	INTRON Cpr97Ea
3R	17923230	3R_17923230_INS [dm3] 3R_22097508_INS [dm6]	T	TG	3.962e^-4	0.639	INTRON CG5778
2R	13372880	2R_13372880_SNP [dm3] 2R_17485375_SNP [dm6]	C	T	3.965e^-4	0.639	UTR_5_PRIME CG43110 INTRON NT5E-2	TF binding site mE1_TFBS_Trl
2L	5700354	2L_5700354_SNP [dm3] 2L_5700354_SNP [dm6]	C	G	3.969e^-4	0.639	INTERGENIC
2L	2853855	2L_2853855_SNP [dm3] 2L_2853855_SNP [dm6]	G	A	3.974e^-4	0.639	INTRON CG3104
3L	16391024	3L_16391024_SNP [dm3] 3L_16397924_SNP [dm6]	A	T	3.982e^-4	0.639	SYNONYMOUS_CODING CG44836
3R	25306110	3R_25306110_SNP [dm3] 3R_29480388_SNP [dm6]	T	A	3.988e^-4	0.639	INTRON Ptp99A
3R	25056903	3R_25056903_SNP [dm3] 3R_29231181_SNP [dm6]	G	A	3.995e^-4	0.639	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	12780731	2R_12780731_SNP [dm3] 2R_16893226_SNP [dm6]	T	G	3.998e^-4	0.639	INTRON CG8910	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	14172702	3L_14172702_SNP [dm3] 3L_14179602_SNP [dm6]	A	C	4.000e^-4	0.639	UPSTREAM D INTERGENIC	regulatory region REDfly_CRMs
3R	25791708	3R_25791708_SNP [dm3] 3R_29965986_SNP [dm6]	G	A	4.003e^-4	0.639	INTRON TkR99D
3R	19614159	3R_19614159_SNP [dm3] 3R_23788437_SNP [dm6]	G	T	4.004e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	18228515	3R_18228515_SNP [dm3] 3R_22402793_SNP [dm6]	C	A	4.017e^-4	0.639	UTR_5_PRIME CG13856
2R	8197105	2R_8197105_SNP [dm3] 2R_12309600_SNP [dm6]	C	T	4.018e^-4	0.639	SYNONYMOUS_CODING CG17739	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	26407866	3R_26407866_SNP [dm3] 3R_30582144_SNP [dm6]	T	G	4.024e^-4	0.639	DOWNSTREAM Rpt6R & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
3L	8635374	3L_8635374_SNP [dm3] 3L_8642274_SNP [dm6]	T	C	4.024e^-4	0.639	INTRON Cpr66D
3R	18614994	3R_18614994_SNP [dm3] 3R_22789272_SNP [dm6]	G	C	4.025e^-4	0.639	INTRON CG7029	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19650682	X_19650682_SNP [dm3] X_19756649_SNP [dm6]	A	C	4.026e^-4	0.639	SYNONYMOUS_CODING Pmp70	TF binding site mE1_TFBS_cad
2R	8196402	2R_8196402_SNP [dm3] 2R_12308897_SNP [dm6]	A	C	4.030e^-4	0.639	INTRON CG17739	TF binding site mE1_TFBS_chinmo
3R	16335707	3R_16335707_SNP [dm3] 3R_20509985_SNP [dm6]	C	T	4.031e^-4	0.639	INTRON CG4288
2R	13373347	2R_13373347_SNP [dm3] 2R_17485842_SNP [dm6]	C	A	4.032e^-4	0.639	UTR_5_PRIME CG43110 INTRON NT5E-2
2R	13373403	2R_13373403_SNP [dm3] 2R_17485898_SNP [dm6]	A	C	4.032e^-4	0.639	UTR_5_PRIME CG43110 INTRON NT5E-2
2R	12680543	2R_12680543_SNP [dm3] 2R_16793038_SNP [dm6]	C	A	4.032e^-4	0.639	SYNONYMOUS_CODING CG15919 DOWNSTREAM CG15615 & 1 other
3R	19536455	3R_19536455_SNP [dm3] 3R_23710733_SNP [dm6]	A	C	4.033e^-4	0.639	SYNONYMOUS_CODING CG10301 UPSTREAM CG10300
2R	12883841	2R_12883841_SNP [dm3] 2R_16996336_SNP [dm6]	A	G	4.034e^-4	0.639	DOWNSTREAM ste24c & 1 other INTRON ste24c & 1 other
3L	18277984	3L_18277984_SNP [dm3] 3L_18284884_SNP [dm6]	G	T	4.035e^-4	0.639	INTERGENIC
3L	11306488	3L_11306488_SNP [dm3] 3L_11313388_SNP [dm6]	T	A	4.041e^-4	0.639	UTR_3_PRIME CG7573	TF binding site mE1_TFBS_sens
3R	18848631	3R_18848631_SNP [dm3] 3R_23022909_SNP [dm6]	A	T	4.045e^-4	0.639	INTRON lmd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18649107	3L_18649107_SNP [dm3] 3L_18656007_SNP [dm6]	T	G	4.057e^-4	0.639	INTRON MYPT-75D
3R	17477793	3R_17477793_SNP [dm3] 3R_21652071_SNP [dm6]	A	T	4.058e^-4	0.639	INTRON E2f	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20254450	3R_20254450_SNP [dm3] 3R_24428728_SNP [dm6]	T	G	4.058e^-4	0.639	INTRON nAChRalpha1
3R	15107148	3R_15107148_SNP [dm3] 3R_19281426_SNP [dm6]	G	C	4.067e^-4	0.639	INTERGENIC
3R	19538252	3R_19538252_SNP [dm3] 3R_23712530_SNP [dm6]	A	T	4.069e^-4	0.639	DOWNSTREAM nau INTRON CG10300
3R	18675083	3R_18675083_SNP [dm3] 3R_22849361_SNP [dm6]	T	C	4.072e^-4	0.639	INTERGENIC
3R	19812392	3R_19812392_SNP [dm3] 3R_23986670_SNP [dm6]	C	A	4.080e^-4	0.639	UTR_5_PRIME CG5902 UPSTREAM CG13603	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18548458	3R_18548458_SNP [dm3] 3R_22722736_SNP [dm6]	G	C	4.090e^-4	0.639	SYNONYMOUS_CODING Irp-1A	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11752906	2R_11752906_SNP [dm3] 2R_15865401_SNP [dm6]	A	G	4.096e^-4	0.639	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19614158	3R_19614158_SNP [dm3] 3R_23788436_SNP [dm6]	C	T	4.107e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	19614161	3R_19614161_MNP [dm3] 3R_23788439_MNP [dm6]	ACA	TTG	4.107e^-4	0.639	INTRON mbc	TF binding site BDTNP1_TFBS_dl
3R	9014826	3R_9014826_SNP [dm3] 3R_13189104_SNP [dm6]	A	C	4.118e^-4	0.639	NON_SYNONYMOUS_CODING CG14380
3R	17577123	3R_17577123_SNP [dm3] 3R_21751401_SNP [dm6]	T	C	4.127e^-4	0.639	INTRON CG31233	TF binding site mE1_TFBS_cad
3L	5303222	3L_5303222_SNP [dm3] 3L_5310122_SNP [dm6]	G	A	4.133e^-4	0.639	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	20453149	X_20453149_SNP [dm3] X_20582122_SNP [dm6]	A	G	4.135e^-4	0.639	INTERGENIC
3R	24120325	3R_24120325_SNP [dm3] 3R_28294603_SNP [dm6]	C	T	4.139e^-4	0.639	DOWNSTREAM CR44229 & 2 others INTERGENIC
2L	9155576	2L_9155576_SNP [dm3] 2L_9155576_SNP [dm6]	G	T	4.142e^-4	0.639	INTRON CG32982
3R	25802719	3R_25802719_SNP [dm3] 3R_29976997_SNP [dm6]	T	A	4.150e^-4	0.639	INTERGENIC
2L	6308613	2L_6308613_SNP [dm3] 2L_6308613_SNP [dm6]	G	A	4.154e^-4	0.639	SYNONYMOUS_CODING CG43922 UPSTREAM CG13984 INTRON Ddr	TF binding site mE1_TFBS_cad
3R	7897925	3R_7897925_SNP [dm3] 3R_12072203_SNP [dm6]	A	C	4.158e^-4	0.639	INTRON CG14741
3R	18571110	3R_18571110_SNP [dm3] 3R_22745388_SNP [dm6]	T	C	4.163e^-4	0.639	NON_SYNONYMOUS_CODING vret UPSTREAM HP1c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	4406170	2L_4406170_SNP [dm3] 2L_4406170_SNP [dm6]	G	A	4.171e^-4	0.639	NON_SYNONYMOUS_CODING CG15431	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7220245	3L_7220245_SNP [dm3] 3L_7227145_SNP [dm6]	T	G	4.172e^-4	0.639	INTERGENIC
X	16004293	X_16004293_SNP [dm3] X_16110260_SNP [dm6]	T	A	4.177e^-4	0.639	INTERGENIC
X	4337291	X_4337291_INS [dm3] X_4443258_INS [dm6]	T	TCTT	4.177e^-4	0.639	INTRON CR32773 & 1 other	regulatory region REDfly_CRMs
3R	25206860	3R_25206860_SNP [dm3] 3R_29381138_SNP [dm6]	G	A	4.178e^-4	0.639	INTRON Ptp99A
3R	25699036	3R_25699036_SNP [dm3] 3R_29873314_SNP [dm6]	A	C	4.180e^-4	0.639	INTRON CG34133	TF binding site mE1_TFBS_cad
3L	4725946	3L_4725946_SNP [dm3] 3L_4725946_SNP [dm6]	C	T	4.181e^-4	0.639	INTRON RhoGEF64C	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	2877400	2R_2877400_SNP [dm3] 2R_6989895_SNP [dm6]	G	T	4.186e^-4	0.639	DOWNSTREAM CG17002 INTERGENIC	transposable element FlyBase
X	16103508	X_16103508_SNP [dm3] X_16209475_SNP [dm6]	G	A	4.186e^-4	0.639	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA
3R	19401921	3R_19401921_SNP [dm3] 3R_23576199_SNP [dm6]	T	C	4.187e^-4	0.639	INTRON beat-IV
X	18341916	X_18341916_SNP [dm3] X_18447883_SNP [dm6]	A	T	4.188e^-4	0.639	INTRON CG32547
2R	14320852	2R_14320852_SNP [dm3] 2R_18433347_SNP [dm6]	C	A	4.189e^-4	0.639	INTRON CG30118
2R	7567023	2R_7567023_SNP [dm3] 2R_11679518_SNP [dm6]	T	C	4.191e^-4	0.639	UTR_5_PRIME Buffy UPSTREAM Roc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	2854000	2L_2854000_SNP [dm3] 2L_2854000_SNP [dm6]	T	C	4.203e^-4	0.639	INTRON CG3104	TF binding site mE1_TFBS_cnc
2R	10309575	2R_10309575_SNP [dm3] 2R_14422070_SNP [dm6]	G	A	4.217e^-4	0.639	SYNONYMOUS_CODING CG17386	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19959704	3L_19959704_SNP [dm3] 3L_19966604_SNP [dm6]	T	A	4.221e^-4	0.639	INTRON Ac76E
3R	25052631	3R_25052631_SNP [dm3] 3R_29226909_SNP [dm6]	C	T	4.238e^-4	0.639	SYNONYMOUS_CODING CG14507 DOWNSTREAM Brd8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15953197	3R_15953197_SNP [dm3] 3R_20127475_SNP [dm6]	G	T	4.240e^-4	0.639	INTERGENIC
2R	20477815	2R_20477815_SNP [dm3] 2R_24590292_SNP [dm6]	C	A	4.253e^-4	0.639	INTRON pio	TF binding site BDTNP1_TFBS_prd
X	7575484	X_7575484_SNP [dm3] X_7681451_SNP [dm6]	T	C	4.254e^-4	0.639	UPSTREAM CR45666 & 1 other DOWNSTREAM CHES-1-like INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	1408267	3L_1408267_SNP [dm3] 3L_1408267_SNP [dm6]	T	C	4.258e^-4	0.639	INTRON Ptp61F
3R	20815949	3R_20815949_SNP [dm3] 3R_24990227_SNP [dm6]	G	C	4.264e^-4	0.639	INTRON tnc
3R	18524096	3R_18524096_SNP [dm3] 3R_22698374_SNP [dm6]	G	T	4.264e^-4	0.639	UTR_5_PRIME Cyp6d4 DOWNSTREAM cd	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

se_Protein phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results