DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.323e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2001 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	3790257	2L_3790257_SNP [dm3] 2L_3790257_SNP [dm6]	T	A	6.716e^-7	0.72	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	3694940	3R_3694940_SNP [dm3] 3R_7869218_SNP [dm6]	A	G	1.073e^-6	0.72	INTRON CG17816
3R	12000816	3R_12000816_DEL [dm3] 3R_16175094_DEL [dm6]	TT	T	2.445e^-6	0.72	INTRON CG8925
2L	1962948	2L_1962948_SNP [dm3] 2L_1962948_SNP [dm6]	A	G	5.099e^-6	0.72	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1045077	4_1045077_SNP [dm3] 4_1024451_SNP [dm6]	T	A	5.252e^-6	0.72	INTRON PlexA	transposable element FlyBase
X	3339613	X_3339613_INS [dm3] X_3445580_INS [dm6]	T	TTTTT	5.414e^-6	0.72	UPSTREAM CG12535 INTRON CR44999 & 1 other
3L	14144017	3L_14144017_SNP [dm3] 3L_14150917_SNP [dm6]	T	A	5.962e^-6	0.72	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14551266	3L_14551266_SNP [dm3] 3L_14558166_SNP [dm6]	T	G	6.251e^-6	0.72	INTERGENIC
2L	1950162	2L_1950162_SNP [dm3] 2L_1950162_SNP [dm6]	T	C	6.915e^-6	0.72	DOWNSTREAM erm INTERGENIC
4	905876	4_905876_SNP [dm3] 4_885250_SNP [dm6]	A	G	8.288e^-6	0.72	DOWNSTREAM CR44029 INTRON unc-13
2R	18593318	2R_18593318_DEL [dm3] 2R_22705813_DEL [dm6]	TAAAA	C	8.773e^-6	0.72	DOWNSTREAM Obp58c & 1 other INTERGENIC
X	8401874	X_8401874_SNP [dm3] X_8507841_SNP [dm6]	A	G	8.841e^-6	0.72	INTRON CG33181
2R	18593336	2R_18593336_SNP [dm3] 2R_22705831_SNP [dm6]	A	T	8.961e^-6	0.72	DOWNSTREAM Obp58c & 1 other INTERGENIC
2L	2343535	2L_2343535_DEL [dm3] 2L_2343535_DEL [dm6]	AATTTAGCGCTTGAGCAA...	A	1.181e^-5	0.72	INTRON CG9967 & 1 other
4	949736	4_949736_SNP [dm3] 4_929110_SNP [dm6]	A	G	1.212e^-5	0.72	INTRON eIF4G
2L	12673778	2L_12673778_SNP [dm3] 2L_12673778_SNP [dm6]	C	T	1.351e^-5	0.72	INTRON pdm2
X	8401856	X_8401856_SNP [dm3] X_8507823_SNP [dm6]	A	G	1.360e^-5	0.72	INTRON CG33181
X	3339520	X_3339520_SNP [dm3] X_3445487_SNP [dm6]	G	A	1.406e^-5	0.72	UPSTREAM CG12535 INTRON CR44999 & 1 other
2L	4064484	2L_4064484_SNP [dm3] 2L_4064484_SNP [dm6]	C	G	1.409e^-5	0.72	INTRON ed
2R	4688447	2R_4688447_SNP [dm3] 2R_8800942_SNP [dm6]	A	C	1.436e^-5	0.72	INTRON sns	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
4	1014427	4_1014427_SNP [dm3] 4_993801_SNP [dm6]	A	C	1.583e^-5	0.72	INTRON toy	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
4	1107540	4_1107540_SNP [dm3] 4_1086914_SNP [dm6]	A	T	1.584e^-5	0.72	INTERGENIC	regulatory region REDfly_CRMs
4	983467	4_983467_SNP [dm3] 4_962841_SNP [dm6]	G	T	1.631e^-5	0.72	DOWNSTREAM CR44030 INTRON fuss
2L	15942867	2L_15942867_INS [dm3] 2L_15942867_INS [dm6]	C	CT	1.690e^-5	0.72	DOWNSTREAM CG12448 INTRON beat-Ib
2L	918534	2L_918534_SNP [dm3] 2L_918534_SNP [dm6]	C	G	1.726e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
4	943229	4_943229_SNP [dm3] 4_922603_SNP [dm6]	C	A	1.726e^-5	0.72	INTRON eIF4G	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15472633	3L_15472633_DEL [dm3] 3L_15479533_DEL [dm6]	AAAATCAGCAGCAGCA...	A	1.730e^-5	0.72	INTERGENIC
X	3339621	X_3339621_INS [dm3] X_3445588_INS [dm6]	C	CCATTGGGC	1.825e^-5	0.72	UPSTREAM CG12535 INTRON CR44999 & 1 other
3L	2347256	3L_2347256_SNP [dm3] 3L_2347256_SNP [dm6]	T	A	1.835e^-5	0.72	INTERGENIC
4	1131714	4_1131714_SNP [dm3] 4_1111088_SNP [dm6]	A	G	1.882e^-5	0.72	DOWNSTREAM sv INTRON sv
4	716979	4_716979_SNP [dm3] 4_696353_SNP [dm6]	T	A	1.887e^-5	0.72	UPSTREAM myo INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1015402	4_1015402_SNP [dm3] 4_994776_SNP [dm6]	C	G	1.990e^-5	0.72	INTRON toy	TF binding site BDTNP1_TFBS_dl
4	954995	4_954995_SNP [dm3] 4_934369_SNP [dm6]	C	A	2.031e^-5	0.72	INTERGENIC	transposable element FlyBase
3R	10459335	3R_10459335_SNP [dm3] 3R_14633613_SNP [dm6]	G	T	2.135e^-5	0.72	INTRON CG7886 & 1 other
3L	5373766	3L_5373766_SNP [dm3] 3L_5380666_SNP [dm6]	C	T	2.242e^-5	0.72	INTRON Ir64a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12673826	2L_12673826_SNP [dm3] 2L_12673826_SNP [dm6]	A	G	2.246e^-5	0.72	INTRON pdm2
3R	14584366	3R_14584366_SNP [dm3] 3R_18758644_SNP [dm6]	C	T	2.268e^-5	0.72	NON_SYNONYMOUS_CODING CG14299 DOWNSTREAM CG7720	TF binding site mE1_TFBS_cad mE1_TFBS_run mE1_TFBS_Ubx
X	7894193	X_7894193_SNP [dm3] X_8000160_SNP [dm6]	G	A	2.287e^-5	0.72	INTRON Tbh	TF binding site BDTNP1_TFBS_dl
2L	16963878	2L_16963878_SNP [dm3] 2L_16963878_SNP [dm6]	A	T	2.303e^-5	0.72	INTERGENIC
X	9195898	X_9195898_SNP [dm3] X_9301865_SNP [dm6]	A	C	2.359e^-5	0.72	INTRON lz	TF binding site mE1_TFBS_chinmo
2L	870223	2L_870223_SNP [dm3] 2L_870223_SNP [dm6]	G	A	2.374e^-5	0.72	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	16963918	2L_16963918_SNP [dm3] 2L_16963918_SNP [dm6]	C	T	2.387e^-5	0.72	INTERGENIC
4	898277	4_898277_SNP [dm3] 4_877651_SNP [dm6]	T	G	2.399e^-5	0.72	INTRON unc-13	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	15362472	X_15362472_SNP [dm3] X_15468439_SNP [dm6]	C	T	2.413e^-5	0.72	SYNONYMOUS_CODING Grip128 UPSTREAM CG15642 DOWNSTREAM CG15641	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	9018278	3L_9018278_SNP [dm3] 3L_9025178_SNP [dm6]	A	C	2.468e^-5	0.72	INTERGENIC
2L	12049436	2L_12049436_SNP [dm3] 2L_12049436_SNP [dm6]	A	C	2.558e^-5	0.72	UTR_5_PRIME CG14945 UPSTREAM CG14945 & 1 other	TF binding site mE1_TFBS_HSA
2L	5288399	2L_5288399_SNP [dm3] 2L_5288399_SNP [dm6]	C	T	2.587e^-5	0.72	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5288434	2L_5288434_SNP [dm3] 2L_5288434_SNP [dm6]	A	T	2.587e^-5	0.72	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	917516	4_917516_DEL [dm3] 4_896890_DEL [dm6]	TT	T	2.616e^-5	0.72	INTRON unc-13
2R	18593427	2R_18593427_DEL [dm3] 2R_22705922_DEL [dm6]	CAGAA	TT	2.627e^-5	0.72	UTR_3_PRIME Obp58c DOWNSTREAM Obp58b	TF binding site mE1_TFBS_inv
2L	4059848	2L_4059848_SNP [dm3] 2L_4059848_SNP [dm6]	G	A	2.681e^-5	0.72	INTRON ed
4	952085	4_952085_SNP [dm3] 4_931459_SNP [dm6]	A	G	2.728e^-5	0.72	UPSTREAM eIF4G INTERGENIC	transposable element FlyBase
2L	918563	2L_918563_SNP [dm3] 2L_918563_SNP [dm6]	T	C	2.738e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2L	918574	2L_918574_SNP [dm3] 2L_918574_SNP [dm6]	T	C	2.738e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3L	6762799	3L_6762799_SNP [dm3] 3L_6769699_SNP [dm6]	A	C	2.791e^-5	0.72	INTERGENIC
4	851780	4_851780_SNP [dm3] 4_831154_SNP [dm6]	T	G	2.795e^-5	0.72	INTRON Sox102F
3L	24393020	3L_24393020_SNP [dm3] 3L_24399920_SNP [dm6]	C	A	2.811e^-5	0.72	INTRON nvd
3L	9844799	3L_9844799_INS [dm3] 3L_9851699_INS [dm6]	C	CGTTCCC	2.830e^-5	0.72	INTRON RasGAP1	TF binding site mE1_TFBS_cad
4	965726	4_965726_SNP [dm3] 4_945100_SNP [dm6]	A	T	2.833e^-5	0.72	DOWNSTREAM mGluR INTRON mGluR	transposable element FlyBase
3L	15302659	3L_15302659_SNP [dm3] 3L_15309559_SNP [dm6]	G	C	2.849e^-5	0.72	NON_SYNONYMOUS_CODING CG7255 INTRON CG7255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7893966	X_7893966_SNP [dm3] X_7999933_SNP [dm6]	T	A	2.855e^-5	0.72	INTRON Tbh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2767279	2L_2767279_SNP [dm3] 2L_2767279_SNP [dm6]	A	T	2.878e^-5	0.72	UTR_3_PRIME aph-1 UPSTREAM Taf10 DOWNSTREAM Taf10b & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3L	6762877	3L_6762877_SNP [dm3] 3L_6769777_SNP [dm6]	G	T	2.918e^-5	0.72	INTERGENIC
4	912580	4_912580_SNP [dm3] 4_891954_SNP [dm6]	G	C	2.987e^-5	0.72	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13
4	907416	4_907416_SNP [dm3] 4_886790_SNP [dm6]	T	C	2.992e^-5	0.72	INTRON unc-13
2L	877106	2L_877106_SNP [dm3] 2L_877106_SNP [dm6]	G	T	3.006e^-5	0.72	UPSTREAM ninaA DOWNSTREAM CG15824 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
4	960900	4_960900_SNP [dm3] 4_940274_SNP [dm6]	C	T	3.026e^-5	0.72	SYNONYMOUS_CODING mGluR INTRON mGluR
3R	15696484	3R_15696484_SNP [dm3] 3R_19870762_SNP [dm6]	A	G	3.067e^-5	0.72	SYNONYMOUS_CODING CG4562	TF binding site mE1_TFBS_cad
4	903318	4_903318_SNP [dm3] 4_882692_SNP [dm6]	C	T	3.106e^-5	0.72	NON_SYNONYMOUS_CODING unc-13 INTRON unc-13 EXON CR44029
3L	24393019	3L_24393019_SNP [dm3] 3L_24399919_SNP [dm6]	C	T	3.107e^-5	0.72	INTRON nvd
3R	20876412	3R_20876412_SNP [dm3] 3R_25050690_SNP [dm6]	C	G	3.157e^-5	0.72	UTR_5_PRIME CG11791 INTRON CG11791	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
4	1029121	4_1029121_SNP [dm3] 4_1008495_SNP [dm6]	G	A	3.252e^-5	0.72	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
3R	5129773	3R_5129773_SNP [dm3] 3R_9304051_SNP [dm6]	G	T	3.258e^-5	0.72	INTRON CG8861
4	1136217	4_1136217_SNP [dm3] 4_1115591_SNP [dm6]	A	G	3.297e^-5	0.72	UTR_3_PRIME Cals
3L	12039628	3L_12039628_SNP [dm3] 3L_12046528_SNP [dm6]	A	T	3.363e^-5	0.72	INTRON rols
3L	24392997	3L_24392997_DEL [dm3] 3L_24399897_DEL [dm6]	TTA	T	3.375e^-5	0.72	INTRON nvd
3L	24393004	3L_24393004_SNP [dm3] 3L_24399904_SNP [dm6]	C	T	3.375e^-5	0.72	INTRON nvd
3L	24393023	3L_24393023_SNP [dm3] 3L_24399923_SNP [dm6]	C	T	3.375e^-5	0.72	INTRON nvd
3L	24522577	3L_24522577_SNP [dm3] 3L_24529477_SNP [dm6]	C	T	3.375e^-5	0.72	INTERGENIC
4	641107	4_641107_SNP [dm3] 4_620481_SNP [dm6]	A	C	3.391e^-5	0.72	UTR_3_PRIME Eph DOWNSTREAM Eph
4	1191630	4_1191630_SNP [dm3] 4_1171004_SNP [dm6]	T	G	3.421e^-5	0.72	INTERGENIC
2L	14887090	2L_14887090_SNP [dm3] 2L_14887090_SNP [dm6]	A	G	3.477e^-5	0.72	INTERGENIC
2R	6680132	2R_6680132_SNP [dm3] 2R_10792627_SNP [dm6]	T	A	3.533e^-5	0.72	INTRON CG33144 & 1 other
3R	12035549	3R_12035549_SNP [dm3] 3R_16209827_SNP [dm6]	T	A	3.541e^-5	0.72	UPSTREAM CR45639 & 1 other DOWNSTREAM CR45640 EXON CR45637
2R	16406401	2R_16406401_SNP [dm3] 2R_20518896_SNP [dm6]	G	C	3.603e^-5	0.72	INTERGENIC
3R	13913767	3R_13913767_SNP [dm3] 3R_18088045_SNP [dm6]	T	C	3.638e^-5	0.72	INTERGENIC
4	759105	4_759105_SNP [dm3] 4_738479_SNP [dm6]	A	G	3.639e^-5	0.72	INTRON bt
2L	8252792	2L_8252792_SNP [dm3] 2L_8252792_SNP [dm6]	A	T	3.643e^-5	0.72	INTRON CG8086
4	747586	4_747586_SNP [dm3] 4_726960_SNP [dm6]	G	A	3.652e^-5	0.72	SPLICE_SITE_REGION bt SYNONYMOUS_CODING bt INTRON bt
2L	15942848	2L_15942848_SNP [dm3] 2L_15942848_SNP [dm6]	C	A	3.669e^-5	0.72	UTR_3_PRIME CG12448 INTRON beat-Ib
2R	18701551	2R_18701551_SNP [dm3] 2R_22814046_SNP [dm6]	A	T	3.684e^-5	0.72	INTRON stl	TF binding site mE1_TFBS_chinmo
4	851782	4_851782_SNP [dm3] 4_831156_SNP [dm6]	A	G	3.712e^-5	0.72	INTRON Sox102F
2L	12673815	2L_12673815_SNP [dm3] 2L_12673815_SNP [dm6]	G	A	3.736e^-5	0.72	INTRON pdm2
2R	19998330	2R_19998330_SNP [dm3] 2R_24110807_SNP [dm6]	T	A	3.828e^-5	0.72	INTRON CG4049
4	1122770	4_1122770_SNP [dm3] 4_1102144_SNP [dm6]	T	C	3.830e^-5	0.72	INTRON sv
3L	24393006	3L_24393006_DEL [dm3] 3L_24399906_DEL [dm6]	GCT	A	3.873e^-5	0.72	INTRON nvd
3L	24393029	3L_24393029_SNP [dm3] 3L_24399929_SNP [dm6]	G	T	3.891e^-5	0.72	INTRON nvd
2L	526695	2L_526695_SNP [dm3] 2L_526695_SNP [dm6]	T	G	3.966e^-5	0.72	INTRON ush	regulatory region REDfly_CRMs
3R	8132919	3R_8132919_SNP [dm3] 3R_12307197_SNP [dm6]	A	G	4.077e^-5	0.72	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	24501997	3L_24501997_SNP [dm3] 3L_24508897_SNP [dm6]	C	A	4.080e^-5	0.72	INTERGENIC
4	656944	4_656944_SNP [dm3] 4_636318_SNP [dm6]	T	G	4.218e^-5	0.72	NON_SYNONYMOUS_CODING CG9935 UTR_3_PRIME CG9935 DOWNSTREAM CG1732
2R	9128370	2R_9128370_SNP [dm3] 2R_13240865_SNP [dm6]	T	C	4.220e^-5	0.72	UTR_3_PRIME GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	918434	2L_918434_SNP [dm3] 2L_918434_SNP [dm6]	T	C	4.253e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	18701556	2R_18701556_SNP [dm3] 2R_22814051_SNP [dm6]	T	A	4.282e^-5	0.72	INTRON stl	TF binding site mE1_TFBS_chinmo
3L	24393011	3L_24393011_SNP [dm3] 3L_24399911_SNP [dm6]	C	T	4.378e^-5	0.72	INTRON nvd
3L	24530108	3L_24530108_SNP [dm3] 3L_24537009_SNP [dm6]	G	A	4.409e^-5	0.72	UPSTREAM mRpS5 INTERGENIC
2L	870456	2L_870456_SNP [dm3] 2L_870456_SNP [dm6]	A	C	4.427e^-5	0.72	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	15158597	X_15158597_SNP [dm3] X_15264564_SNP [dm6]	A	T	4.436e^-5	0.72	INTERGENIC
4	941113	4_941113_SNP [dm3] 4_920487_SNP [dm6]	C	T	4.485e^-5	0.72	SYNONYMOUS_CODING eIF4G
2L	14858319	2L_14858319_SNP [dm3] 2L_14858319_SNP [dm6]	C	T	4.567e^-5	0.72	INTERGENIC
2L	12673818	2L_12673818_SNP [dm3] 2L_12673818_SNP [dm6]	A	C	4.608e^-5	0.72	INTRON pdm2
3L	15203422	3L_15203422_SNP [dm3] 3L_15210322_SNP [dm6]	G	A	4.680e^-5	0.72	INTERGENIC
4	978162	4_978162_SNP [dm3] 4_957536_SNP [dm6]	A	G	4.712e^-5	0.72	NON_SYNONYMOUS_CODING 4E-T	TF binding site mE1_TFBS_sens
3R	17066613	3R_17066613_SNP [dm3] 3R_21240891_SNP [dm6]	T	C	4.794e^-5	0.72	INTERGENIC	regulatory region REDfly_CRMs
3L	10872966	3L_10872966_SNP [dm3] 3L_10879866_SNP [dm6]	C	A	4.842e^-5	0.72	UTR_3_PRIME Blos4 UPSTREAM CG6418 DOWNSTREAM CG6409 & 1 other
4	947747	4_947747_INS [dm3] 4_927121_INS [dm6]	T	TT	4.891e^-5	0.72	INTRON eIF4G
4	939355	4_939355_SNP [dm3] 4_918729_SNP [dm6]	T	C	4.904e^-5	0.72	SYNONYMOUS_CODING eIF4G
2L	4064559	2L_4064559_SNP [dm3] 2L_4064559_SNP [dm6]	T	C	4.923e^-5	0.72	INTRON ed
2L	924096	2L_924096_SNP [dm3] 2L_924096_SNP [dm6]	T	C	4.942e^-5	0.72	INTRON CG4341	TF binding site mE1_TFBS_chinmo
4	719055	4_719055_SNP [dm3] 4_698429_SNP [dm6]	T	C	4.943e^-5	0.72	INTRON ey
3R	17066754	3R_17066754_SNP [dm3] 3R_21241032_SNP [dm6]	C	T	4.958e^-5	0.72	INTERGENIC	regulatory region REDfly_CRMs
X	3339541	X_3339541_SNP [dm3] X_3445508_SNP [dm6]	T	A	4.959e^-5	0.72	UPSTREAM CG12535 INTRON CR44999 & 1 other
2L	919389	2L_919389_INS [dm3] 2L_919389_INS [dm6]	C	CCC	4.964e^-5	0.72	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	989218	3L_989218_SNP [dm3] 3L_989218_SNP [dm6]	T	C	5.004e^-5	0.72	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	5416251	3R_5416251_SNP [dm3] 3R_9590529_SNP [dm6]	T	C	5.017e^-5	0.72	NON_SYNONYMOUS_CODING bocksbeutel UPSTREAM CG8312 DOWNSTREAM P58IPK	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	1215320	4_1215320_SNP [dm3] 4_1194694_SNP [dm6]	A	T	5.092e^-5	0.72	INTRON PIP4K	transposable element FlyBase
3L	14524708	3L_14524708_SNP [dm3] 3L_14531608_SNP [dm6]	C	A	5.095e^-5	0.72	INTRON bbg
2L	12049477	2L_12049477_SNP [dm3] 2L_12049477_SNP [dm6]	C	T	5.319e^-5	0.72	START_GAINED CG14945 UTR_5_PRIME CG14945 UPSTREAM CG14945 & 1 other
4	1138604	4_1138604_SNP [dm3] 4_1117978_SNP [dm6]	A	C	5.332e^-5	0.72	NON_SYNONYMOUS_CODING Cals
4	963763	4_963763_SNP [dm3] 4_943137_SNP [dm6]	A	G	5.446e^-5	0.72	SYNONYMOUS_CODING mGluR UTR_3_PRIME mGluR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11525940	2R_11525940_SNP [dm3] 2R_15638435_SNP [dm6]	A	T	5.462e^-5	0.72	INTRON CG42524
2L	2772192	2L_2772192_INS [dm3] 2L_2772192_INS [dm6]	G	GCTT	5.502e^-5	0.72	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
2R	6680149	2R_6680149_SNP [dm3] 2R_10792644_SNP [dm6]	T	C	5.537e^-5	0.72	INTRON CG33144 & 1 other
4	960702	4_960702_SNP [dm3] 4_940076_SNP [dm6]	A	C	5.601e^-5	0.72	INTRON mGluR	transposable element FlyBase
2L	5288392	2L_5288392_SNP [dm3] 2L_5288392_SNP [dm6]	T	A	5.615e^-5	0.72	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9195903	X_9195903_SNP [dm3] X_9301870_SNP [dm6]	G	T	5.620e^-5	0.72	INTRON lz	TF binding site mE1_TFBS_chinmo
4	850192	4_850192_SNP [dm3] 4_829566_SNP [dm6]	C	A	5.623e^-5	0.72	INTRON Sox102F
4	1024906	4_1024906_SNP [dm3] 4_1004280_SNP [dm6]	A	G	5.743e^-5	0.72	SYNONYMOUS_CODING toy
4	1028952	4_1028952_SNP [dm3] 4_1008326_SNP [dm6]	G	A	5.743e^-5	0.72	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
4	927054	4_927054_SNP [dm3] 4_906428_SNP [dm6]	A	G	5.743e^-5	0.72	UTR_5_PRIME unc-13 UPSTREAM CR43361 INTRON CR43361	transposable element FlyBase
4	941570	4_941570_SNP [dm3] 4_920944_SNP [dm6]	A	G	5.743e^-5	0.72	NON_SYNONYMOUS_CODING eIF4G
4	942408	4_942408_SNP [dm3] 4_921782_SNP [dm6]	A	G	5.743e^-5	0.72	INTRON eIF4G	transposable element FlyBase
4	954869	4_954869_SNP [dm3] 4_934243_SNP [dm6]	A	G	5.743e^-5	0.72	INTERGENIC	transposable element FlyBase
4	960927	4_960927_SNP [dm3] 4_940301_SNP [dm6]	G	A	5.743e^-5	0.72	SYNONYMOUS_CODING mGluR INTRON mGluR
4	962616	4_962616_SNP [dm3] 4_941990_SNP [dm6]	A	T	5.743e^-5	0.72	INTRON mGluR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4064624	2L_4064624_SNP [dm3] 2L_4064624_SNP [dm6]	A	C	5.785e^-5	0.72	INTRON ed
2L	15942885	2L_15942885_SNP [dm3] 2L_15942885_SNP [dm6]	C	T	5.928e^-5	0.72	DOWNSTREAM CG12448 INTRON beat-Ib
3L	13426122	3L_13426122_SNP [dm3] 3L_13433022_SNP [dm6]	G	A	5.949e^-5	0.72	UPSTREAM tRNA:V4:70BCb DOWNSTREAM tRNA:V4:70BCa INTRON CG10713
3L	10330636	3L_10330636_SNP [dm3] 3L_10337536_SNP [dm6]	A	G	6.008e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1045415	4_1045415_SNP [dm3] 4_1024789_SNP [dm6]	A	C	6.068e^-5	0.72	INTRON PlexA	transposable element FlyBase
2R	4912600	2R_4912600_SNP [dm3] 2R_9025095_SNP [dm6]	A	C	6.084e^-5	0.72	INTRON CG8170	TF binding site mE1_TFBS_HSA
2L	5288421	2L_5288421_SNP [dm3] 2L_5288421_SNP [dm6]	G	C	6.095e^-5	0.72	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12885804	3L_12885804_SNP [dm3] 3L_12892704_SNP [dm6]	T	C	6.122e^-5	0.72	UTR_5_PRIME CG14118 DOWNSTREAM CG43894	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	10974139	3R_10974139_SNP [dm3] 3R_15148417_SNP [dm6]	C	T	6.182e^-5	0.72	UPSTREAM GlyS INTERGENIC
3R	12941186	3R_12941186_SNP [dm3] 3R_17115464_SNP [dm6]	C	T	6.197e^-5	0.72	INTRON cher
X	21319486	X_21319486_SNP [dm3] X_21448459_SNP [dm6]	A	G	6.216e^-5	0.72	INTRON CG42343
2L	7127747	2L_7127747_SNP [dm3] 2L_7127747_SNP [dm6]	G	C	6.234e^-5	0.72	INTRON Pvf3	TF binding site BDTNP1_TFBS_prd
4	863619	4_863619_SNP [dm3] 4_842993_SNP [dm6]	C	T	6.315e^-5	0.72	UPSTREAM CR33797 INTRON fd102C
4	1111976	4_1111976_SNP [dm3] 4_1091350_SNP [dm6]	T	C	6.323e^-5	0.72	INTRON sv	transposable element FlyBase
2L	12673821	2L_12673821_SNP [dm3] 2L_12673821_SNP [dm6]	C	T	6.431e^-5	0.72	INTRON pdm2
2R	6680143	2R_6680143_SNP [dm3] 2R_10792638_SNP [dm6]	A	G	6.481e^-5	0.72	INTRON CG33144 & 1 other
2R	18701550	2R_18701550_SNP [dm3] 2R_22814045_SNP [dm6]	A	C	6.524e^-5	0.72	INTRON stl	TF binding site mE1_TFBS_chinmo
3L	10236766	3L_10236766_SNP [dm3] 3L_10243666_SNP [dm6]	C	G	6.538e^-5	0.72	SYNONYMOUS_CODING Or67c UPSTREAM CR44541
4	945632	4_945632_SNP [dm3] 4_925006_SNP [dm6]	C	T	6.555e^-5	0.72	INTRON eIF4G
3R	5129519	3R_5129519_SNP [dm3] 3R_9303797_SNP [dm6]	A	G	6.640e^-5	0.72	INTRON CG8861
4	1008012	4_1008012_SNP [dm3] 4_987386_SNP [dm6]	G	C	6.652e^-5	0.72	INTERGENIC	regulatory region REDfly_CRMs
2L	5538988	2L_5538988_SNP [dm3] 2L_5538988_SNP [dm6]	G	A	6.718e^-5	0.72	SYNONYMOUS_CODING CG14015 DOWNSTREAM Hel25E	TF binding site mE1_TFBS_chinmo
X	8781406	X_8781406_SNP [dm3] X_8887373_SNP [dm6]	G	A	6.729e^-5	0.72	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	982386	4_982386_SNP [dm3] 4_961760_SNP [dm6]	G	C	6.788e^-5	0.72	DOWNSTREAM fuss INTRON CR44030	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12018304	3R_12018304_SNP [dm3] 3R_16192582_SNP [dm6]	T	A	6.830e^-5	0.72	INTRON sra
3L	2598254	3L_2598254_SNP [dm3] 3L_2598254_SNP [dm6]	C	T	6.837e^-5	0.72	NON_SYNONYMOUS_CODING CG12182
3R	12738286	3R_12738286_SNP [dm3] 3R_16912564_SNP [dm6]	C	T	6.926e^-5	0.72	INTRON iab-8
3R	15664389	3R_15664389_INS [dm3] 3R_19838667_INS [dm6]	T	TT	6.942e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_Kr
2L	870395	2L_870395_SNP [dm3] 2L_870395_SNP [dm6]	T	A	6.951e^-5	0.72	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	918420	2L_918420_SNP [dm3] 2L_918420_SNP [dm6]	A	G	6.961e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3R	26520326	3R_26520326_SNP [dm3] 3R_30694604_SNP [dm6]	A	G	6.974e^-5	0.72	SYNONYMOUS_CODING CG12069 DOWNSTREAM Pka-C2
2L	4429211	2L_4429211_SNP [dm3] 2L_4429211_SNP [dm6]	A	G	6.992e^-5	0.72	INTRON CG15431
2L	15942873	2L_15942873_SNP [dm3] 2L_15942873_SNP [dm6]	A	T	7.067e^-5	0.72	DOWNSTREAM CG12448 INTRON beat-Ib
4	1120871	4_1120871_SNP [dm3] 4_1100245_SNP [dm6]	G	A	7.114e^-5	0.72	INTRON sv
2R	6459482	2R_6459482_SNP [dm3] 2R_10571977_SNP [dm6]	T	A	7.130e^-5	0.72	INTRON psq
3L	15472626	3L_15472626_SNP [dm3] 3L_15479526_SNP [dm6]	T	C	7.151e^-5	0.72	INTERGENIC
2L	4064487	2L_4064487_SNP [dm3] 2L_4064487_SNP [dm6]	T	C	7.197e^-5	0.72	INTRON ed
2L	12712542	2L_12712542_SNP [dm3] 2L_12712542_SNP [dm6]	T	A	7.281e^-5	0.72	UPSTREAM CG5787 DOWNSTREAM CG5792 INTRON CG5787	TF binding site BDTNP1_TFBS_dl
3R	17066749	3R_17066749_SNP [dm3] 3R_21241027_SNP [dm6]	A	G	7.315e^-5	0.72	INTERGENIC	regulatory region REDfly_CRMs
2L	5288435	2L_5288435_SNP [dm3] 2L_5288435_SNP [dm6]	T	G	7.355e^-5	0.72	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10197324	2L_10197324_SNP [dm3] 2L_10197324_SNP [dm6]	T	C	7.388e^-5	0.72	INTRON Sur
2L	10861634	2L_10861634_SNP [dm3] 2L_10861634_SNP [dm6]	C	A	7.436e^-5	0.72	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
2L	9627160	2L_9627160_DEL [dm3] 2L_9627160_DEL [dm6]	AA	A	7.503e^-5	0.72	INTERGENIC
3R	14112976	3R_14112976_SNP [dm3] 3R_18287254_SNP [dm6]	G	T	7.574e^-5	0.72	SYNONYMOUS_CODING CG7131 DOWNSTREAM CG8064	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	949738	4_949738_SNP [dm3] 4_929112_SNP [dm6]	T	G	7.578e^-5	0.72	INTRON eIF4G
3L	9751081	3L_9751081_SNP [dm3] 3L_9757981_SNP [dm6]	A	G	7.598e^-5	0.72	INTRON CG42268
3L	18404948	3L_18404948_SNP [dm3] 3L_18411848_SNP [dm6]	T	C	7.643e^-5	0.72	INTERGENIC	TF binding site mE1_TFBS_Kr
3L	9648050	3L_9648050_SNP [dm3] 3L_9654950_SNP [dm6]	G	T	7.684e^-5	0.72	INTRON fry & 1 other
2R	10253376	2R_10253376_SNP [dm3] 2R_14365871_SNP [dm6]	A	T	7.684e^-5	0.72	SYNONYMOUS_CODING CG34184 UPSTREAM CG34442 DOWNSTREAM Tfb1
3R	8122545	3R_8122545_SNP [dm3] 3R_12296823_SNP [dm6]	C	A	7.729e^-5	0.72	DOWNSTREAM svp INTRON svp
4	971992	4_971992_SNP [dm3] 4_951366_SNP [dm6]	G	A	7.757e^-5	0.72	DOWNSTREAM 4E-T INTERGENIC
3R	10974138	3R_10974138_SNP [dm3] 3R_15148416_SNP [dm6]	A	T	7.837e^-5	0.72	UPSTREAM GlyS INTERGENIC
X	21290172	X_21290172_SNP [dm3] X_21419145_SNP [dm6]	T	C	7.843e^-5	0.72	INTERGENIC
2L	7254639	2L_7254639_SNP [dm3] 2L_7254639_SNP [dm6]	A	G	8.030e^-5	0.72	DOWNSTREAM Wnt4 INTERGENIC
X	14036962	X_14036962_SNP [dm3] X_14142929_SNP [dm6]	A	G	8.059e^-5	0.72	DOWNSTREAM CR44658 INTERGENIC
3L	15302607	3L_15302607_SNP [dm3] 3L_15309507_SNP [dm6]	C	A	8.067e^-5	0.72	SYNONYMOUS_CODING CG7255 INTRON CG7255	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	11525952	2R_11525952_SNP [dm3] 2R_15638447_SNP [dm6]	A	G	8.074e^-5	0.72	INTRON CG42524
4	809073	4_809073_SNP [dm3] 4_788447_SNP [dm6]	C	T	8.137e^-5	0.72	UPSTREAM MED26 INTRON MED26	TF binding site BDTNP1_TFBS_dl
3L	18641853	3L_18641853_SNP [dm3] 3L_18648753_SNP [dm6]	G	T	8.164e^-5	0.72	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_twi
2R	18670933	2R_18670933_SNP [dm3] 2R_22783428_SNP [dm6]	T	C	8.185e^-5	0.72	UPSTREAM CG30270 INTRON CG42260
3L	14551278	3L_14551278_SNP [dm3] 3L_14558178_SNP [dm6]	C	T	8.213e^-5	0.72	INTERGENIC
2L	919447	2L_919447_SNP [dm3] 2L_919447_SNP [dm6]	A	G	8.259e^-5	0.72	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	18792742	3R_18792742_SNP [dm3] 3R_22967020_SNP [dm6]	T	C	8.260e^-5	0.72	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
X	20478031	X_20478031_SNP [dm3] X_20607004_SNP [dm6]	T	C	8.304e^-5	0.72	INTRON RunxA
3L	12312943	3L_12312943_SNP [dm3] 3L_12319843_SNP [dm6]	T	C	8.322e^-5	0.72	INTERGENIC
3R	15525438	3R_15525438_SNP [dm3] 3R_19699716_SNP [dm6]	T	A	8.355e^-5	0.72	DOWNSTREAM Naam INTERGENIC
4	1205061	4_1205061_SNP [dm3] 4_1184435_SNP [dm6]	A	T	8.405e^-5	0.72	INTERGENIC	transposable element FlyBase
3L	1115073	3L_1115073_SNP [dm3] 3L_1115073_SNP [dm6]	G	A	8.456e^-5	0.72	INTERGENIC
2L	10861635	2L_10861635_SNP [dm3] 2L_10861635_SNP [dm6]	C	T	8.487e^-5	0.72	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
2L	918466	2L_918466_SNP [dm3] 2L_918466_SNP [dm6]	G	A	8.538e^-5	0.72	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3L	24522364	3L_24522364_SNP [dm3] 3L_24529264_SNP [dm6]	A	G	8.658e^-5	0.72	INTERGENIC
2R	9128229	2R_9128229_SNP [dm3] 2R_13240724_SNP [dm6]	C	T	8.674e^-5	0.72	SYNONYMOUS_CODING GstE14	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	849672	4_849672_SNP [dm3] 4_829046_SNP [dm6]	A	T	8.690e^-5	0.72	INTRON Sox102F	TF binding site BDTNP1_TFBS_twi
2R	6268334	2R_6268334_SNP [dm3] 2R_10380829_SNP [dm6]	C	T	8.696e^-5	0.72	UPSTREAM Ir47a INTRON CG42732
2R	6273629	2R_6273629_SNP [dm3] 2R_10386124_SNP [dm6]	G	C	8.696e^-5	0.72	INTRON CG42732
2R	6280850	2R_6280850_SNP [dm3] 2R_10393345_SNP [dm6]	A	C	8.696e^-5	0.72	INTRON CG42732
3L	15751422	3L_15751422_SNP [dm3] 3L_15758322_SNP [dm6]	G	A	8.714e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	1962633	2L_1962633_SNP [dm3] 2L_1962633_SNP [dm6]	G	A	8.748e^-5	0.72	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16163696	X_16163696_SNP [dm3] X_16269663_SNP [dm6]	T	C	8.765e^-5	0.72	INTRON kat80
2L	17651430	2L_17651430_SNP [dm3] 2L_17651430_SNP [dm6]	A	G	8.765e^-5	0.72	SYNONYMOUS_CODING CadN
2R	14881739	2R_14881739_SNP [dm3] 2R_18994234_SNP [dm6]	T	A	8.777e^-5	0.72	UPSTREAM snoRNA:abba-a INTRON tn
4	974753	4_974753_SNP [dm3] 4_954127_SNP [dm6]	T	C	8.817e^-5	0.72	NON_SYNONYMOUS_CODING 4E-T
2L	4356862	2L_4356862_SNP [dm3] 2L_4356862_SNP [dm6]	T	G	8.845e^-5	0.72	INTERGENIC
2L	12673806	2L_12673806_INS [dm3] 2L_12673806_INS [dm6]	A	AGTTAACAATTATCGCCATT...	8.884e^-5	0.72	INTRON pdm2
3L	9850935	3L_9850935_SNP [dm3] 3L_9857835_SNP [dm6]	A	G	8.916e^-5	0.72	UTR_3_PRIME CG10809
4	1163376	4_1163376_SNP [dm3] 4_1142750_SNP [dm6]	T	C	8.920e^-5	0.72	INTRON CG32017
3R	19437250	3R_19437250_SNP [dm3] 3R_23611528_SNP [dm6]	C	T	8.961e^-5	0.72	INTRON CG31145
2R	5031932	2R_5031932_SNP [dm3] 2R_9144427_SNP [dm6]	A	T	8.991e^-5	0.72	SYNONYMOUS_CODING Prp38 UPSTREAM shrb & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens mE1_TFBS_ttk
2L	918813	2L_918813_SNP [dm3] 2L_918813_SNP [dm6]	G	T	9.073e^-5	0.72	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15942881	2L_15942881_SNP [dm3] 2L_15942881_SNP [dm6]	T	A	9.099e^-5	0.72	DOWNSTREAM CG12448 INTRON beat-Ib
3L	15562087	3L_15562087_SNP [dm3] 3L_15568987_SNP [dm6]	T	A	9.137e^-5	0.72	INTRON CG6498	TF binding site mE1_TFBS_chinmo
3R	23332202	3R_23332202_SNP [dm3] 3R_27506480_SNP [dm6]	C	G	9.147e^-5	0.72	INTERGENIC
3R	10973976	3R_10973976_SNP [dm3] 3R_15148254_SNP [dm6]	T	A	9.241e^-5	0.72	UPSTREAM GlyS INTERGENIC	TF binding site BDTNP1_TFBS_dl
4	1216007	4_1216007_SNP [dm3] 4_1195381_SNP [dm6]	T	C	9.244e^-5	0.72	INTRON PIP4K
2R	16798558	2R_16798558_SNP [dm3] 2R_20911053_SNP [dm6]	C	T	9.290e^-5	0.72	DOWNSTREAM CG9235 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16055503	2R_16055503_SNP [dm3] 2R_20167998_SNP [dm6]	A	T	9.300e^-5	0.72	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll
2L	12047018	2L_12047018_SNP [dm3] 2L_12047018_SNP [dm6]	T	G	9.371e^-5	0.72	UTR_3_PRIME Plzf UPSTREAM CG6770 DOWNSTREAM CR44589
X	19961488	X_19961488_SNP [dm3] X_20067455_SNP [dm6]	C	A	9.392e^-5	0.72	INTERGENIC
4	1072823	4_1072823_SNP [dm3] 4_1052197_SNP [dm6]	G	A	9.395e^-5	0.72	UPSTREAM CaMKII INTRON CaMKII	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
4	1204452	4_1204452_SNP [dm3] 4_1183826_SNP [dm6]	A	T	9.438e^-5	0.72	INTERGENIC	transposable element FlyBase
4	943898	4_943898_SNP [dm3] 4_923272_SNP [dm6]	G	C	9.449e^-5	0.72	INTRON eIF4G
4	1257109	4_1257109_INS [dm3] 4_1253383_INS [dm6]	T	TT	9.545e^-5	0.723	INTRON Caps	TF binding site BDTNP1_TFBS_dl
2L	4064474	2L_4064474_SNP [dm3] 2L_4064474_SNP [dm6]	T	C	9.612e^-5	0.723	INTRON ed
4	1028630	4_1028630_SNP [dm3] 4_1008004_SNP [dm6]	A	C	9.633e^-5	0.723	DOWNSTREAM toy INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
4	1011649	4_1011649_SNP [dm3] 4_991023_SNP [dm6]	C	A	9.653e^-5	0.723	INTRON toy	regulatory region REDfly_CRMs transposable element FlyBase
2R	18593338	2R_18593338_SNP [dm3] 2R_22705833_SNP [dm6]	T	A	9.758e^-5	0.725	DOWNSTREAM Obp58c & 1 other INTERGENIC
3L	6784819	3L_6784819_SNP [dm3] 3L_6791719_SNP [dm6]	C	T	9.833e^-5	0.725	SYNONYMOUS_CODING vvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15537720	3L_15537720_SNP [dm3] 3L_15544620_SNP [dm6]	T	C	9.843e^-5	0.725	INTRON CrebA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16281333	2R_16281333_SNP [dm3] 2R_20393828_SNP [dm6]	G	A	9.871e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6538674	2L_6538674_SNP [dm3] 2L_6538674_SNP [dm6]	T	G	9.879e^-5	0.725	INTRON eya
2L	918818	2L_918818_SNP [dm3] 2L_918818_SNP [dm6]	A	T	9.909e^-5	0.725	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3999502	2L_3999502_SNP [dm3] 2L_3999502_SNP [dm6]	G	A	9.976e^-5	0.726	UPSTREAM CG43797 INTERGENIC
3R	15168530	3R_15168530_SNP [dm3] 3R_19342808_SNP [dm6]	A	T	1.001e^-4	0.726	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	5838927	3L_5838927_SNP [dm3] 3L_5845827_SNP [dm6]	A	T	1.004e^-4	0.726	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
4	1045538	4_1045538_INS [dm3] 4_1024912_INS [dm6]	T	TT	1.012e^-4	0.727	INTRON PlexA	transposable element FlyBase
3R	14739608	3R_14739608_SNP [dm3] 3R_18913886_SNP [dm6]	A	T	1.013e^-4	0.727	UPSTREAM CG14291 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
4	917974	4_917974_SNP [dm3] 4_897348_SNP [dm6]	C	G	1.019e^-4	0.729	INTRON unc-13
4	574134	4_574134_SNP [dm3] 4_553508_SNP [dm6]	T	A	1.025e^-4	0.73	SYNONYMOUS_CODING Thd1
X	7902667	X_7902667_MNP [dm3] X_8008634_MNP [dm6]	TAA	ATT	1.053e^-4	0.744	INTRON Tbh
2R	14881692	2R_14881692_SNP [dm3] 2R_18994187_SNP [dm6]	T	G	1.056e^-4	0.744	UPSTREAM snoRNA:abba-a INTRON tn
2L	870240	2L_870240_SNP [dm3] 2L_870240_SNP [dm6]	T	C	1.060e^-4	0.744	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16281336	2R_16281336_SNP [dm3] 2R_20393831_SNP [dm6]	T	G	1.061e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	919907	2L_919907_SNP [dm3] 2L_919907_SNP [dm6]	T	A	1.068e^-4	0.744	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10253391	2R_10253391_SNP [dm3] 2R_14365886_SNP [dm6]	A	C	1.070e^-4	0.744	SYNONYMOUS_CODING CG34184 UPSTREAM CG34442 DOWNSTREAM Tfb1
2R	13561899	2R_13561899_SNP [dm3] 2R_17674394_SNP [dm6]	C	T	1.074e^-4	0.744	SYNONYMOUS_CODING Sema-1b
4	725327	4_725327_SNP [dm3] 4_704701_SNP [dm6]	G	T	1.080e^-4	0.744	UTR_5_PRIME ey INTRON ey	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
4	1275710	4_1275710_SNP [dm3] 4_1271984_SNP [dm6]	T	G	1.082e^-4	0.744	DOWNSTREAM Caps
2L	2853092	2L_2853092_SNP [dm3] 2L_2853092_SNP [dm6]	C	A	1.084e^-4	0.744	INTRON CG3104
3R	15525489	3R_15525489_SNP [dm3] 3R_19699767_SNP [dm6]	A	T	1.092e^-4	0.744	INTERGENIC
3L	13426111	3L_13426111_SNP [dm3] 3L_13433011_SNP [dm6]	C	A	1.094e^-4	0.744	UPSTREAM tRNA:V4:70BCb DOWNSTREAM tRNA:V4:70BCa INTRON CG10713
3R	25139882	3R_25139882_SNP [dm3] 3R_29314160_SNP [dm6]	C	G	1.097e^-4	0.744	INTERGENIC
2L	13917197	2L_13917197_SNP [dm3] 2L_13917197_SNP [dm6]	G	A	1.105e^-4	0.747	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6286351	2R_6286351_SNP [dm3] 2R_10398846_SNP [dm6]	A	T	1.108e^-4	0.747	INTRON CG42732
4	645875	4_645875_SNP [dm3] 4_625249_SNP [dm6]	A	T	1.122e^-4	0.751	NON_SYNONYMOUS_CODING mav UPSTREAM mir-954	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_zfh1
3L	10524331	3L_10524331_SNP [dm3] 3L_10531231_SNP [dm6]	C	A	1.127e^-4	0.751	INTRON A2bp1
4	735329	4_735329_INS [dm3] 4_714703_INS [dm6]	C	CAAAATCACCATTGGTAATA...	1.128e^-4	0.751	INTRON ey
3R	19294842	3R_19294842_SNP [dm3] 3R_23469120_SNP [dm6]	G	C	1.134e^-4	0.751	INTRON CG4374
3R	19294861	3R_19294861_SNP [dm3] 3R_23469139_SNP [dm6]	G	A	1.134e^-4	0.751	INTRON CG4374
2L	918498	2L_918498_SNP [dm3] 2L_918498_SNP [dm6]	A	G	1.140e^-4	0.751	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	12042560	2R_12042560_SNP [dm3] 2R_16155055_SNP [dm6]	T	A	1.143e^-4	0.751	INTRON lbk	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17644255	2R_17644255_SNP [dm3] 2R_21756750_SNP [dm6]	A	G	1.146e^-4	0.751	UPSTREAM Grx-1 INTERGENIC
4	949796	4_949796_INS [dm3] 4_929170_INS [dm6]	A	ATTAATA	1.153e^-4	0.753	INTRON eIF4G
3L	24306953	3L_24306953_SNP [dm3] 3L_24313853_SNP [dm6]	A	T	1.199e^-4	0.76	INTERGENIC
3L	24307127	3L_24307127_SNP [dm3] 3L_24314027_SNP [dm6]	G	T	1.199e^-4	0.76	INTERGENIC
3L	24308209	3L_24308209_SNP [dm3] 3L_24315109_SNP [dm6]	C	T	1.199e^-4	0.76	INTERGENIC
3L	24315221	3L_24315221_DEL [dm3] 3L_24322121_DEL [dm6]	TA	T	1.199e^-4	0.76	INTERGENIC
4	943295	4_943295_SNP [dm3] 4_922669_SNP [dm6]	G	C	1.206e^-4	0.76	INTRON eIF4G	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
3L	15621758	3L_15621758_SNP [dm3] 3L_15628658_SNP [dm6]	T	A	1.213e^-4	0.76	INTRON comm3
3L	24395994	3L_24395994_SNP [dm3] 3L_24402894_SNP [dm6]	A	T	1.213e^-4	0.76	INTERGENIC
2R	8778915	2R_8778915_SNP [dm3] 2R_12891410_SNP [dm6]	T	A	1.235e^-4	0.76	INTRON vg	TF binding site mE1_TFBS_cad
3R	10167070	3R_10167070_SNP [dm3] 3R_14341348_SNP [dm6]	C	T	1.243e^-4	0.76	SYNONYMOUS_CODING NK7.1
2L	4495075	2L_4495075_SNP [dm3] 2L_4495075_SNP [dm6]	G	A	1.249e^-4	0.76	SYNONYMOUS_CODING dp INTRON dp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2489560	2L_2489560_SNP [dm3] 2L_2489560_SNP [dm6]	T	A	1.249e^-4	0.76	UTR_3_PRIME Slh DOWNSTREAM Slh	enhancer FlyBase TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	21740683	3R_21740683_SNP [dm3] 3R_25914961_SNP [dm6]	A	T	1.256e^-4	0.76	DOWNSTREAM CG42235 INTRON CG42235
3L	8863608	3L_8863608_SNP [dm3] 3L_8870508_SNP [dm6]	C	T	1.256e^-4	0.76	INTRON dally
4	1015712	4_1015712_SNP [dm3] 4_995086_SNP [dm6]	G	A	1.257e^-4	0.76	INTRON toy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2021986	3L_2021986_SNP [dm3] 3L_2021986_SNP [dm6]	A	C	1.266e^-4	0.76	UPSTREAM CG42357 DOWNSTREAM CG42356 INTERGENIC
2L	10861753	2L_10861753_SNP [dm3] 2L_10861753_SNP [dm6]	A	T	1.268e^-4	0.76	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
2L	8531363	2L_8531363_SNP [dm3] 2L_8531363_SNP [dm6]	A	T	1.271e^-4	0.76	INTRON CG17834
3R	12018283	3R_12018283_SNP [dm3] 3R_16192561_SNP [dm6]	G	C	1.273e^-4	0.76	INTRON sra
3R	17066617	3R_17066617_SNP [dm3] 3R_21240895_SNP [dm6]	T	C	1.273e^-4	0.76	INTERGENIC	regulatory region REDfly_CRMs
2R	7314567	2R_7314567_SNP [dm3] 2R_11427062_SNP [dm6]	G	T	1.278e^-4	0.76	INTRON Drip
4	1020476	4_1020476_SNP [dm3] 4_999850_SNP [dm6]	C	T	1.280e^-4	0.76	INTRON toy	transposable element FlyBase
2L	918487	2L_918487_SNP [dm3] 2L_918487_SNP [dm6]	T	C	1.283e^-4	0.76	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
4	850195	4_850195_SNP [dm3] 4_829569_SNP [dm6]	G	T	1.284e^-4	0.76	INTRON Sox102F
3R	1216309	3R_1216309_SNP [dm3] 3R_5390587_SNP [dm6]	G	T	1.284e^-4	0.76	INTRON kkv	regulatory region REDfly_CRMs
2L	4064937	2L_4064937_SNP [dm3] 2L_4064937_SNP [dm6]	C	T	1.291e^-4	0.76	INTRON ed
2R	5034213	2R_5034213_SNP [dm3] 2R_9146708_SNP [dm6]	G	A	1.298e^-4	0.76	SYNONYMOUS_CODING CG30344
3L	15766433	3L_15766433_SNP [dm3] 3L_15773333_SNP [dm6]	G	A	1.303e^-4	0.76	INTERGENIC
2L	870199	2L_870199_SNP [dm3] 2L_870199_SNP [dm6]	T	C	1.309e^-4	0.76	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	24393016	3L_24393016_SNP [dm3] 3L_24399916_SNP [dm6]	T	G	1.311e^-4	0.76	INTRON nvd
3L	24393022	3L_24393022_SNP [dm3] 3L_24399922_SNP [dm6]	C	G	1.311e^-4	0.76	INTRON nvd
4	975007	4_975007_SNP [dm3] 4_954381_SNP [dm6]	G	A	1.316e^-4	0.76	INTRON 4E-T
4	959139	4_959139_SNP [dm3] 4_938513_SNP [dm6]	T	C	1.323e^-4	0.76	SYNONYMOUS_CODING mGluR
3R	14498348	3R_14498348_SNP [dm3] 3R_18672626_SNP [dm6]	C	A	1.323e^-4	0.76	DOWNSTREAM CG31230 INTRON CG7702
2R	18130220	2R_18130220_SNP [dm3] 2R_22242715_SNP [dm6]	C	A	1.325e^-4	0.76	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	2331767	X_2331767_SNP [dm3] X_2437734_SNP [dm6]	C	T	1.327e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	1067002	4_1067002_SNP [dm3] 4_1046376_SNP [dm6]	C	T	1.329e^-4	0.76	INTRON CaMKII	transposable element FlyBase
X	13662548	X_13662548_SNP [dm3] X_13768515_SNP [dm6]	A	T	1.332e^-4	0.76	INTRON rdgB	TF binding site mE1_TFBS_inv
3R	14585606	3R_14585606_SNP [dm3] 3R_18759884_SNP [dm6]	C	T	1.334e^-4	0.76	NON_SYNONYMOUS_CODING CG7720
3L	2598244	3L_2598244_SNP [dm3] 3L_2598244_SNP [dm6]	A	T	1.335e^-4	0.76	SYNONYMOUS_CODING CG12182
3L	6762771	3L_6762771_SNP [dm3] 3L_6769671_SNP [dm6]	C	T	1.350e^-4	0.76	INTERGENIC
2R	15174418	2R_15174418_SNP [dm3] 2R_19286913_SNP [dm6]	C	T	1.354e^-4	0.76	UPSTREAM CG10474 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15174364	2R_15174364_SNP [dm3] 2R_19286859_SNP [dm6]	G	A	1.361e^-4	0.76	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
4	682852	4_682852_DEL [dm3] 4_662226_DEL [dm6]	ATG	A	1.362e^-4	0.76	INTRON gw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	5339139	3L_5339139_SNP [dm3] 3L_5346039_SNP [dm6]	T	C	1.363e^-4	0.76	NON_SYNONYMOUS_CODING lama
3L	22442892	3L_22442892_SNP [dm3] 3L_22449792_SNP [dm6]	A	C	1.364e^-4	0.76	INTERGENIC
3R	14499107	3R_14499107_SNP [dm3] 3R_18673385_SNP [dm6]	C	T	1.376e^-4	0.76	SYNONYMOUS_CODING CG7702	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	24313402	3L_24313402_SNP [dm3] 3L_24320302_SNP [dm6]	C	G	1.382e^-4	0.76	INTERGENIC
2R	9431607	2R_9431607_SNP [dm3] 2R_13544102_SNP [dm6]	T	G	1.386e^-4	0.76	INTRON CG6145	TF binding site BDTNP1_TFBS_twi
3L	8765765	3L_8765765_SNP [dm3] 3L_8772665_SNP [dm6]	T	C	1.390e^-4	0.76	INTRON Fhos
4	924959	4_924959_SNP [dm3] 4_904333_SNP [dm6]	T	A	1.396e^-4	0.76	UPSTREAM unc-13 & 1 other INTRON unc-13	TF binding site BDTNP1_TFBS_dl
3L	14143994	3L_14143994_SNP [dm3] 3L_14150894_SNP [dm6]	A	C	1.396e^-4	0.76	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6097438	2L_6097438_SNP [dm3] 2L_6097438_SNP [dm6]	G	A	1.398e^-4	0.76	SYNONYMOUS_CODING CG9175 DOWNSTREAM Kr-h1 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	5860019	3L_5860019_SNP [dm3] 3L_5866919_SNP [dm6]	C	T	1.398e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	13698705	3L_13698705_SNP [dm3] 3L_13705605_SNP [dm6]	T	A	1.402e^-4	0.76	INTRON bru-3
2L	4063503	2L_4063503_SNP [dm3] 2L_4063503_SNP [dm6]	G	T	1.403e^-4	0.76	INTRON ed
3R	10528390	3R_10528390_SNP [dm3] 3R_14702668_SNP [dm6]	T	G	1.407e^-4	0.76	INTRON kibra	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	27123732	3R_27123732_SNP [dm3] 3R_31298010_SNP [dm6]	G	C	1.415e^-4	0.76	INTERGENIC
4	971174	4_971174_SNP [dm3] 4_950548_SNP [dm6]	T	G	1.417e^-4	0.76	DOWNSTREAM 4E-T INTERGENIC	transposable element FlyBase
3L	4990482	3L_4990482_SNP [dm3] 3L_4990482_SNP [dm6]	C	T	1.419e^-4	0.76	INTRON Con
2L	2863597	2L_2863597_SNP [dm3] 2L_2863597_SNP [dm6]	C	T	1.420e^-4	0.76	INTRON CG2991	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	870219	2L_870219_SNP [dm3] 2L_870219_SNP [dm6]	G	A	1.422e^-4	0.76	UPSTREAM PNUTS & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5288382	2L_5288382_SNP [dm3] 2L_5288382_SNP [dm6]	T	A	1.426e^-4	0.76	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	849677	4_849677_INS [dm3] 4_829051_INS [dm6]	A	AGTATTTTTATTCTTGATCA...	1.428e^-4	0.76	INTRON Sox102F	TF binding site BDTNP1_TFBS_twi
4	1190136	4_1190136_SNP [dm3] 4_1169510_SNP [dm6]	C	T	1.448e^-4	0.76	DOWNSTREAM Kif3C INTERGENIC	transposable element FlyBase
3R	25152915	3R_25152915_SNP [dm3] 3R_29327193_SNP [dm6]	C	A	1.448e^-4	0.76	INTERGENIC
3L	3998019	3L_3998019_SNP [dm3] 3L_3998019_SNP [dm6]	T	G	1.448e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	17644249	2R_17644249_SNP [dm3] 2R_21756744_SNP [dm6]	C	T	1.449e^-4	0.76	UPSTREAM Grx-1 INTERGENIC
3L	2170567	3L_2170567_SNP [dm3] 3L_2170567_SNP [dm6]	G	C	1.450e^-4	0.76	SYNONYMOUS_CODING CG5704
4	1183560	4_1183560_INS [dm3] 4_1162934_INS [dm6]	A	TCGGGACTTTTCT...	1.451e^-4	0.76	UPSTREAM CG32017 INTRON Kif3C	transposable element FlyBase
3L	9078318	3L_9078318_SNP [dm3] 3L_9085218_SNP [dm6]	C	T	1.458e^-4	0.76	SYNONYMOUS_CODING Tequila INTRON Tequila
3R	19294915	3R_19294915_SNP [dm3] 3R_23469193_SNP [dm6]	G	T	1.459e^-4	0.76	INTRON CG4374
3L	1942749	3L_1942749_SNP [dm3] 3L_1942749_SNP [dm6]	T	C	1.461e^-4	0.76	UTR_3_PRIME mu2 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	15361592	X_15361592_SNP [dm3] X_15467559_SNP [dm6]	T	C	1.478e^-4	0.76	UTR_5_PRIME CG15642 UPSTREAM CG15641 & 1 other DOWNSTREAM CG6299 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15321344	2L_15321344_INS [dm3] 2L_15321344_INS [dm6]	C	CT	1.481e^-4	0.76	INTERGENIC
2R	15388725	2R_15388725_SNP [dm3] 2R_19501220_SNP [dm6]	G	A	1.486e^-4	0.76	UTR_5_PRIME CG16926 DOWNSTREAM CG15120
2L	919311	2L_919311_SNP [dm3] 2L_919311_SNP [dm6]	C	T	1.489e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	924274	2L_924274_SNP [dm3] 2L_924274_SNP [dm6]	A	G	1.489e^-4	0.76	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	5284553	3L_5284553_SNP [dm3] 3L_5291453_SNP [dm6]	G	A	1.492e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18593304	2R_18593304_SNP [dm3] 2R_22705799_SNP [dm6]	C	T	1.500e^-4	0.76	DOWNSTREAM Obp58c & 1 other INTERGENIC
2L	3899313	2L_3899313_SNP [dm3] 2L_3899313_SNP [dm6]	G	C	1.504e^-4	0.76	INTRON capu
3R	10557472	3R_10557472_SNP [dm3] 3R_14731750_SNP [dm6]	C	T	1.519e^-4	0.76	UPSTREAM CG7530 DOWNSTREAM eff INTERGENIC	TF binding site mE1_TFBS_Trl
X	19248752	X_19248752_SNP [dm3] X_19354719_SNP [dm6]	T	C	1.522e^-4	0.76	INTRON kek5	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17351214	2L_17351214_SNP [dm3] 2L_17351214_SNP [dm6]	A	G	1.522e^-4	0.76	INTERGENIC
3L	24393012	3L_24393012_SNP [dm3] 3L_24399912_SNP [dm6]	A	C	1.535e^-4	0.76	INTRON nvd
2R	9527299	2R_9527299_SNP [dm3] 2R_13639794_SNP [dm6]	A	C	1.547e^-4	0.76	INTRON fas
3L	9395996	3L_9395996_SNP [dm3] 3L_9402896_SNP [dm6]	C	A	1.548e^-4	0.76	UPSTREAM eIF-4E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl mE1_TFBS_Ubx
2L	5524466	2L_5524466_SNP [dm3] 2L_5524466_SNP [dm6]	A	G	1.551e^-4	0.76	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	12580745	2L_12580745_SNP [dm3] 2L_12580745_SNP [dm6]	C	A	1.556e^-4	0.76	UPSTREAM CR44596 INTERGENIC	TF binding site mE1_TFBS_cnc
3R	25153680	3R_25153680_SNP [dm3] 3R_29327958_SNP [dm6]	C	T	1.556e^-4	0.76	INTERGENIC
2R	12164010	2R_12164010_SNP [dm3] 2R_16276505_SNP [dm6]	G	A	1.559e^-4	0.76	SYNONYMOUS_CODING CG33017
X	20390481	X_20390481_SNP [dm3] X_20519454_SNP [dm6]	C	T	1.559e^-4	0.76	INTRON Tak1
4	1020540	4_1020540_SNP [dm3] 4_999914_SNP [dm6]	T	A	1.563e^-4	0.76	INTRON toy	transposable element FlyBase
X	4329614	X_4329614_SNP [dm3] X_4435581_SNP [dm6]	T	A	1.566e^-4	0.76	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
4	1101284	4_1101284_SNP [dm3] 4_1080658_SNP [dm6]	A	G	1.570e^-4	0.76	NON_SYNONYMOUS_CODING Actbeta
2L	5291459	2L_5291459_SNP [dm3] 2L_5291459_SNP [dm6]	C	A	1.579e^-4	0.76	INTRON vri
4	850539	4_850539_SNP [dm3] 4_829913_SNP [dm6]	A	G	1.590e^-4	0.76	INTRON Sox102F
3R	18579703	3R_18579703_SNP [dm3] 3R_22753981_SNP [dm6]	G	A	1.598e^-4	0.76	UPSTREAM CG7029 INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	2489533	2L_2489533_SNP [dm3] 2L_2489533_SNP [dm6]	T	C	1.612e^-4	0.76	UTR_3_PRIME Slh DOWNSTREAM Slh	enhancer FlyBase TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3R	18792743	3R_18792743_SNP [dm3] 3R_22967021_SNP [dm6]	C	G	1.619e^-4	0.76	UTR_3_PRIME Tpl94D	TF binding site mE1_TFBS_cad
2L	5291503	2L_5291503_SNP [dm3] 2L_5291503_SNP [dm6]	G	A	1.626e^-4	0.76	INTRON vri
2R	9582999	2R_9582999_SNP [dm3] 2R_13695494_SNP [dm6]	A	G	1.637e^-4	0.76	INTRON fas
X	20006152	X_20006152_SNP [dm3] X_20112119_SNP [dm6]	C	T	1.642e^-4	0.76	INTERGENIC	transposable element FlyBase
3L	13698733	3L_13698733_SNP [dm3] 3L_13705633_SNP [dm6]	A	T	1.643e^-4	0.76	INTRON bru-3
2L	3391686	2L_3391686_SNP [dm3] 2L_3391686_SNP [dm6]	A	G	1.652e^-4	0.76	INTERGENIC
3L	3167653	3L_3167653_SNP [dm3] 3L_3167653_SNP [dm6]	A	C	1.652e^-4	0.76	INTRON CG32280
2L	877101	2L_877101_SNP [dm3] 2L_877101_SNP [dm6]	T	G	1.664e^-4	0.76	UPSTREAM ninaA DOWNSTREAM CG15824 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3L	5548796	3L_5548796_SNP [dm3] 3L_5555696_SNP [dm6]	T	C	1.664e^-4	0.76	INTERGENIC
3L	24313519	3L_24313519_SNP [dm3] 3L_24320419_SNP [dm6]	A	T	1.668e^-4	0.76	INTERGENIC
3L	13698756	3L_13698756_SNP [dm3] 3L_13705656_SNP [dm6]	T	C	1.670e^-4	0.76	INTRON bru-3
3L	3148330	3L_3148330_SNP [dm3] 3L_3148330_SNP [dm6]	C	G	1.673e^-4	0.76	UTR_5_PRIME CG12082 UPSTREAM BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
4	559977	4_559977_SNP [dm3] 4_539351_SNP [dm6]	G	A	1.677e^-4	0.76	UTR_3_PRIME zfh2 & 1 other DOWNSTREAM zfh2
2R	18129839	2R_18129839_SNP [dm3] 2R_22242334_SNP [dm6]	T	G	1.678e^-4	0.76	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	11000337	3R_11000337_SNP [dm3] 3R_15174615_SNP [dm6]	C	T	1.678e^-4	0.76	DOWNSTREAM Mf INTRON Mf & 1 other
2R	5025853	2R_5025853_SNP [dm3] 2R_9138348_SNP [dm6]	A	G	1.679e^-4	0.76	UPSTREAM alc & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	5026167	2R_5026167_SNP [dm3] 2R_9138662_SNP [dm6]	G	C	1.679e^-4	0.76	UPSTREAM alc & 2 others INTRON CG8788 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9648025	3L_9648025_SNP [dm3] 3L_9654925_SNP [dm6]	C	G	1.681e^-4	0.76	INTRON fry & 1 other
3L	15741088	3L_15741088_SNP [dm3] 3L_15747988_SNP [dm6]	A	G	1.688e^-4	0.76	EXON CR45240	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19717236	X_19717236_SNP [dm3] X_19823203_SNP [dm6]	C	A	1.690e^-4	0.76	DOWNSTREAM skpE INTERGENIC
3L	11008881	3L_11008881_SNP [dm3] 3L_11015781_SNP [dm6]	C	G	1.699e^-4	0.76	INTERGENIC
2L	5289616	2L_5289616_SNP [dm3] 2L_5289616_SNP [dm6]	G	T	1.708e^-4	0.76	UPSTREAM CR44743 INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2505038	3L_2505038_SNP [dm3] 3L_2505038_SNP [dm6]	C	T	1.714e^-4	0.76	DOWNSTREAM Spn & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14881683	2R_14881683_SNP [dm3] 2R_18994178_SNP [dm6]	C	G	1.715e^-4	0.76	UPSTREAM snoRNA:abba-a INTRON tn
2R	14881686	2R_14881686_DEL [dm3] 2R_18994181_DEL [dm6]	TAA	CT	1.715e^-4	0.76	UPSTREAM snoRNA:abba-a INTRON tn
2R	14881705	2R_14881705_SNP [dm3] 2R_18994200_SNP [dm6]	C	T	1.715e^-4	0.76	UPSTREAM snoRNA:abba-a INTRON tn
2R	14881707	2R_14881707_SNP [dm3] 2R_18994202_SNP [dm6]	A	T	1.715e^-4	0.76	UPSTREAM snoRNA:abba-a INTRON tn
4	547645	4_547645_SNP [dm3] 4_527019_SNP [dm6]	T	C	1.715e^-4	0.76	INTRON zfh2
2L	13741340	2L_13741340_SNP [dm3] 2L_13741340_SNP [dm6]	C	T	1.715e^-4	0.76	INTERGENIC
4	967150	4_967150_SNP [dm3] 4_946524_SNP [dm6]	A	T	1.721e^-4	0.76	SYNONYMOUS_CODING mGluR UTR_3_PRIME mGluR	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	12899501	2L_12899501_SNP [dm3] 2L_12899501_SNP [dm6]	C	T	1.726e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10811429	2L_10811429_SNP [dm3] 2L_10811429_SNP [dm6]	A	G	1.727e^-4	0.76	INTRON Nos
4	954095	4_954095_SNP [dm3] 4_933469_SNP [dm6]	G	A	1.727e^-4	0.76	INTERGENIC	transposable element FlyBase
3L	9563945	3L_9563945_SNP [dm3] 3L_9570845_SNP [dm6]	C	A	1.728e^-4	0.76	INTRON CG42673
2L	3095368	2L_3095368_SNP [dm3] 2L_3095368_SNP [dm6]	C	G	1.732e^-4	0.76	UPSTREAM toc INTRON toc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	923878	2L_923878_SNP [dm3] 2L_923878_SNP [dm6]	C	A	1.743e^-4	0.76	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	6137376	3L_6137376_SNP [dm3] 3L_6144276_SNP [dm6]	T	C	1.750e^-4	0.76	UPSTREAM Lcp65Ac DOWNSTREAM Lcp65Ad INTERGENIC
3L	9648125	3L_9648125_SNP [dm3] 3L_9655025_SNP [dm6]	A	C	1.761e^-4	0.76	INTRON fry & 1 other
3L	3148377	3L_3148377_SNP [dm3] 3L_3148377_SNP [dm6]	A	G	1.762e^-4	0.76	UPSTREAM BtbVII & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3L	5409960	3L_5409960_SNP [dm3] 3L_5416860_SNP [dm6]	G	A	1.763e^-4	0.76	INTERGENIC
3L	5410071	3L_5410071_SNP [dm3] 3L_5416971_SNP [dm6]	A	T	1.763e^-4	0.76	INTERGENIC
3R	6426189	3R_6426189_SNP [dm3] 3R_10600467_SNP [dm6]	G	A	1.773e^-4	0.76	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20323571	3R_20323571_DEL [dm3] 3R_24497849_DEL [dm6]	ATA	A	1.773e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	20323577	3R_20323577_SNP [dm3] 3R_24497855_SNP [dm6]	G	T	1.773e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
4	1268508	4_1268508_SNP [dm3] 4_1264782_SNP [dm6]	G	A	1.774e^-4	0.76	SYNONYMOUS_CODING Caps
3R	10575311	3R_10575311_SNP [dm3] 3R_14749589_SNP [dm6]	C	T	1.782e^-4	0.76	UTR_5_PRIME jvl UPSTREAM smp-30 INTRON jvl & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3L	23947106	3L_23947106_SNP [dm3] 3L_23954006_SNP [dm6]	G	C	1.783e^-4	0.76	INTRON CG40470
4	970785	4_970785_SNP [dm3] 4_950159_SNP [dm6]	A	T	1.787e^-4	0.76	DOWNSTREAM mGluR INTERGENIC	transposable element FlyBase
2L	9079236	2L_9079236_SNP [dm3] 2L_9079236_SNP [dm6]	C	T	1.794e^-4	0.76	INTERGENIC
X	7902674	X_7902674_INS [dm3] X_8008641_INS [dm6]	T	TGTT	1.797e^-4	0.76	INTRON Tbh
4	706427	4_706427_SNP [dm3] 4_685801_SNP [dm6]	C	T	1.803e^-4	0.76	NON_SYNONYMOUS_CODING CG11360
3L	13698746	3L_13698746_SNP [dm3] 3L_13705646_SNP [dm6]	A	T	1.806e^-4	0.76	INTRON bru-3
3L	13698747	3L_13698747_SNP [dm3] 3L_13705647_SNP [dm6]	G	A	1.806e^-4	0.76	INTRON bru-3
2R	18593404	2R_18593404_SNP [dm3] 2R_22705899_SNP [dm6]	C	T	1.809e^-4	0.76	UTR_3_PRIME Obp58c DOWNSTREAM Obp58b	TF binding site mE1_TFBS_inv
2R	17733629	2R_17733629_DEL [dm3] 2R_21846124_DEL [dm6]	AA	A	1.810e^-4	0.76	INTERGENIC
X	8739590	X_8739590_SNP [dm3] X_8845557_SNP [dm6]	A	T	1.819e^-4	0.76	INTRON CG12075
3R	25153686	3R_25153686_SNP [dm3] 3R_29327964_SNP [dm6]	C	T	1.821e^-4	0.76	INTERGENIC
X	20336740	X_20336740_INS [dm3] X_20465713_INS [dm6]	G	GG	1.829e^-4	0.76	UTR_3_PRIME CG32506
3L	4028743	3L_4028743_SNP [dm3] 3L_4028743_SNP [dm6]	G	C	1.834e^-4	0.76	DOWNSTREAM Gr64a INTRON Gr64b & 1 other	TF binding site mE1_TFBS_inv
2L	12028030	2L_12028030_SNP [dm3] 2L_12028030_SNP [dm6]	A	C	1.837e^-4	0.76	INTRON dmGlut	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
4	569787	4_569787_DEL [dm3] 4_549161_DEL [dm6]	TCT	T	1.838e^-4	0.76	INTRON Thd1	transposable element FlyBase
3L	10742152	3L_10742152_SNP [dm3] 3L_10749052_SNP [dm6]	A	C	1.840e^-4	0.76	INTERGENIC
2L	5104010	2L_5104010_SNP [dm3] 2L_5104010_SNP [dm6]	C	T	1.845e^-4	0.76	INTRON Msp300	insulator Insulator_Class_II.mE01
2L	13486744	2L_13486744_SNP [dm3] 2L_13486744_SNP [dm6]	C	T	1.847e^-4	0.76	INTRON CG42784
2L	919240	2L_919240_SNP [dm3] 2L_919240_SNP [dm6]	C	T	1.848e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	842551	4_842551_SNP [dm3] 4_821925_SNP [dm6]	G	T	1.854e^-4	0.76	INTRON Sox102F
4	842608	4_842608_SNP [dm3] 4_821982_SNP [dm6]	C	T	1.854e^-4	0.76	INTRON Sox102F
3R	25019856	3R_25019856_SNP [dm3] 3R_29194134_SNP [dm6]	T	A	1.855e^-4	0.76	INTRON CG14509
3L	10958549	3L_10958549_SNP [dm3] 3L_10965449_SNP [dm6]	G	A	1.859e^-4	0.76	INTERGENIC	TF binding site mE1_TFBS_cad
3L	13698742	3L_13698742_SNP [dm3] 3L_13705642_SNP [dm6]	A	T	1.861e^-4	0.76	INTRON bru-3
3R	21697369	3R_21697369_DEL [dm3] 3R_25871647_DEL [dm6]	TT	T	1.861e^-4	0.76	UTR_3_PRIME CG5890
3L	12724741	3L_12724741_SNP [dm3] 3L_12731641_SNP [dm6]	C	T	1.873e^-4	0.76	INTERGENIC
3R	26587698	3R_26587698_SNP [dm3] 3R_30761976_SNP [dm6]	C	T	1.875e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
2R	17641208	2R_17641208_SNP [dm3] 2R_21753703_SNP [dm6]	A	C	1.876e^-4	0.76	INTERGENIC
3L	15171675	3L_15171675_SNP [dm3] 3L_15178575_SNP [dm6]	G	A	1.880e^-4	0.76	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	14803893	3R_14803893_SNP [dm3] 3R_18978171_SNP [dm6]	A	T	1.915e^-4	0.76	DOWNSTREAM CG12269 & 2 others INTERGENIC
2R	7350244	2R_7350244_DEL [dm3] 2R_11462739_DEL [dm6]	CC	C	1.916e^-4	0.76	UTR_3_PRIME E_Pc_
2R	6268331	2R_6268331_SNP [dm3] 2R_10380826_SNP [dm6]	A	G	1.920e^-4	0.76	UPSTREAM Ir47a INTRON CG42732
2R	6270245	2R_6270245_SNP [dm3] 2R_10382740_SNP [dm6]	T	A	1.920e^-4	0.76	INTRON CG42732
2R	6270813	2R_6270813_DEL [dm3] 2R_10383308_DEL [dm6]	AGTTGATGA	A	1.920e^-4	0.76	INTRON CG42732
2R	6270823	2R_6270823_SNP [dm3] 2R_10383318_SNP [dm6]	C	A	1.920e^-4	0.76	INTRON CG42732
2R	6270825	2R_6270825_SNP [dm3] 2R_10383320_SNP [dm6]	A	T	1.920e^-4	0.76	INTRON CG42732
2R	6270827	2R_6270827_SNP [dm3] 2R_10383322_SNP [dm6]	T	A	1.920e^-4	0.76	INTRON CG42732
2R	6272156	2R_6272156_SNP [dm3] 2R_10384651_SNP [dm6]	C	T	1.920e^-4	0.76	INTRON CG42732
2R	6272722	2R_6272722_SNP [dm3] 2R_10385217_SNP [dm6]	A	T	1.920e^-4	0.76	INTRON CG42732
2R	6273079	2R_6273079_SNP [dm3] 2R_10385574_SNP [dm6]	G	A	1.920e^-4	0.76	INTRON CG42732
2R	6273631	2R_6273631_SNP [dm3] 2R_10386126_SNP [dm6]	C	T	1.920e^-4	0.76	INTRON CG42732
2R	6280792	2R_6280792_SNP [dm3] 2R_10393287_SNP [dm6]	C	G	1.920e^-4	0.76	INTRON CG42732
X	20944249	X_20944249_SNP [dm3] X_21073222_SNP [dm6]	G	T	1.928e^-4	0.762	INTRON bves
X	7659803	X_7659803_SNP [dm3] X_7765770_SNP [dm6]	C	T	1.941e^-4	0.762	SYNONYMOUS_CODING Ir7a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	5376234	3R_5376234_SNP [dm3] 3R_9550512_SNP [dm6]	A	G	1.952e^-4	0.762	INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5376822	3R_5376822_DEL [dm3] 3R_9551100_DEL [dm6]	GTTT	G	1.952e^-4	0.762	UPSTREAM RnpS1 INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	5376898	3R_5376898_SNP [dm3] 3R_9551176_SNP [dm6]	C	A	1.952e^-4	0.762	UPSTREAM RnpS1 INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	5377113	3R_5377113_SNP [dm3] 3R_9551391_SNP [dm6]	C	T	1.952e^-4	0.762	UPSTREAM RnpS1 & 2 others INTRON mura & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	5377318	3R_5377318_SNP [dm3] 3R_9551596_SNP [dm6]	G	A	1.952e^-4	0.762	UPSTREAM RnpS1 & 2 others INTRON mura & 1 other EXON CR42549	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20945468	X_20945468_SNP [dm3] X_21074441_SNP [dm6]	G	A	1.955e^-4	0.762	INTRON bves
3L	15269440	3L_15269440_INS [dm3] 3L_15276340_INS [dm6]	T	TTTGTATAATATAAAAT...	1.962e^-4	0.763	INTERGENIC
2L	8836315	2L_8836315_SNP [dm3] 2L_8836315_SNP [dm6]	T	C	1.968e^-4	0.764	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	3779233	3L_3779233_SNP [dm3] 3L_3779233_SNP [dm6]	T	C	1.991e^-4	0.768	INTRON CG32264
3R	16637953	3R_16637953_SNP [dm3] 3R_20812231_SNP [dm6]	G	A	1.992e^-4	0.768	SYNONYMOUS_CODING Fancd2
3L	11222916	3L_11222916_SNP [dm3] 3L_11229816_SNP [dm6]	A	T	1.995e^-4	0.768	UTR_3_PRIME CG42671 DOWNSTREAM CG42671
2R	6270833	2R_6270833_DEL [dm3] 2R_10383328_DEL [dm6]	AGTATACC	A	2.000e^-4	0.768	INTRON CG42732
2R	6273083	2R_6273083_SNP [dm3] 2R_10385578_SNP [dm6]	G	A	2.000e^-4	0.768	INTRON CG42732
3L	3927969	3L_3927969_SNP [dm3] 3L_3927969_SNP [dm6]	T	G	2.020e^-4	0.774	INTRON Eip63F-1
4	963176	4_963176_SNP [dm3] 4_942550_SNP [dm6]	A	T	2.031e^-4	0.774	INTRON mGluR	TF binding site BDTNP1_TFBS_dl
3R	26573775	3R_26573775_SNP [dm3] 3R_30748053_SNP [dm6]	C	T	2.031e^-4	0.774	UPSTREAM CR43238 INTERGENIC
3L	4464327	3L_4464327_SNP [dm3] 3L_4464327_SNP [dm6]	T	C	2.046e^-4	0.774	UPSTREAM CG15024 DOWNSTREAM CG32241 INTERGENIC
2R	6273073	2R_6273073_SNP [dm3] 2R_10385568_SNP [dm6]	G	A	2.053e^-4	0.774	INTRON CG42732
2R	17472375	2R_17472375_SNP [dm3] 2R_21584870_SNP [dm6]	G	A	2.057e^-4	0.774	NON_SYNONYMOUS_CODING CG30222 UTR_3_PRIME CG30222
2R	15811044	2R_15811044_SNP [dm3] 2R_19923539_SNP [dm6]	T	C	2.059e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_h mE1_TFBS_HSA
X	9184434	X_9184434_DEL [dm3] X_9290401_DEL [dm6]	TT	T	2.063e^-4	0.774	INTRON lz	TF binding site mE1_TFBS_Kr
3R	6731722	3R_6731722_SNP [dm3] 3R_10906000_SNP [dm6]	G	T	2.071e^-4	0.774	INTERGENIC
4	1180859	4_1180859_SNP [dm3] 4_1160233_SNP [dm6]	T	C	2.076e^-4	0.774	INTRON CG32017 & 1 other	transposable element FlyBase
2R	6582925	2R_6582925_SNP [dm3] 2R_10695420_SNP [dm6]	G	A	2.082e^-4	0.774	INTRON stan
2R	6272712	2R_6272712_SNP [dm3] 2R_10385207_SNP [dm6]	A	T	2.082e^-4	0.774	INTRON CG42732
2R	6270829	2R_6270829_SNP [dm3] 2R_10383324_SNP [dm6]	G	A	2.083e^-4	0.774	INTRON CG42732
2L	918814	2L_918814_INS [dm3] 2L_918814_INS [dm6]	G	GTA	2.088e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14586886	3R_14586886_DEL [dm3] 3R_18761164_DEL [dm6]	GAAGG	T	2.091e^-4	0.774	INTRON CG7720
2L	4429152	2L_4429152_SNP [dm3] 2L_4429152_SNP [dm6]	A	G	2.096e^-4	0.774	INTRON CG15431
2L	4414577	2L_4414577_SNP [dm3] 2L_4414577_SNP [dm6]	C	T	2.101e^-4	0.774	INTRON CG15431
3L	11009076	3L_11009076_SNP [dm3] 3L_11015976_SNP [dm6]	A	G	2.105e^-4	0.774	INTERGENIC
2R	9527276	2R_9527276_SNP [dm3] 2R_13639771_SNP [dm6]	G	A	2.106e^-4	0.774	INTRON fas
3L	5186054	3L_5186054_SNP [dm3] 3L_5192954_SNP [dm6]	G	C	2.126e^-4	0.774	INTRON shep
2R	5725898	2R_5725898_SNP [dm3] 2R_9838393_SNP [dm6]	A	G	2.131e^-4	0.774	NON_SYNONYMOUS_CODING CG1663 DOWNSTREAM Lsm11
X	20022937	X_20022937_SNP [dm3] X_20128904_SNP [dm6]	G	A	2.132e^-4	0.774	INTERGENIC	TF binding site mE1_TFBS_inv
X	18661290	X_18661290_SNP [dm3] X_18767257_SNP [dm6]	A	G	2.134e^-4	0.774	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	26198615	3R_26198615_SNP [dm3] 3R_30372893_SNP [dm6]	C	T	2.135e^-4	0.774	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	24393002	3L_24393002_SNP [dm3] 3L_24399902_SNP [dm6]	A	G	2.150e^-4	0.774	INTRON nvd
3L	24393017	3L_24393017_SNP [dm3] 3L_24399917_SNP [dm6]	C	T	2.150e^-4	0.774	INTRON nvd
3L	24393028	3L_24393028_SNP [dm3] 3L_24399928_SNP [dm6]	A	G	2.150e^-4	0.774	INTRON nvd
3L	24393031	3L_24393031_DEL [dm3] 3L_24399931_DEL [dm6]	TTTTA	T	2.150e^-4	0.774	INTRON nvd
3L	24533907	3L_24533907_SNP [dm3] 3L_24540807_SNP [dm6]	A	T	2.150e^-4	0.774	INTRON mRpS5
3L	15765289	3L_15765289_SNP [dm3] 3L_15772189_SNP [dm6]	G	A	2.155e^-4	0.774	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	16915817	2R_16915817_SNP [dm3] 2R_21028312_SNP [dm6]	G	A	2.156e^-4	0.774	DOWNSTREAM CR45148 INTERGENIC
4	1065544	4_1065544_INS [dm3] 4_1044918_INS [dm6]	A	AGGCAAAG	2.158e^-4	0.774	INTRON CaMKII
3R	22717142	3R_22717142_SNP [dm3] 3R_26891420_SNP [dm6]	G	A	2.163e^-4	0.774	INTRON T48	regulatory region REDfly_CRMs
3L	24394579	3L_24394579_SNP [dm3] 3L_24401479_SNP [dm6]	T	A	2.166e^-4	0.774	UTR_3_PRIME nvd
2L	10499551	2L_10499551_SNP [dm3] 2L_10499551_SNP [dm6]	T	C	2.167e^-4	0.774	INTRON Myo31DF
2L	2763428	2L_2763428_SNP [dm3] 2L_2763428_SNP [dm6]	T	A	2.167e^-4	0.774	UTR_3_PRIME Trn-SR & 1 other DOWNSTREAM CG3077
2L	6557690	2L_6557690_SNP [dm3] 2L_6557690_SNP [dm6]	C	T	2.168e^-4	0.774	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22703882	3R_22703882_SNP [dm3] 3R_26878160_SNP [dm6]	A	G	2.179e^-4	0.776	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
2L	762479	2L_762479_SNP [dm3] 2L_762479_SNP [dm6]	T	A	2.183e^-4	0.776	DOWNSTREAM GABA-B-R3 INTERGENIC
X	5298081	X_5298081_SNP [dm3] X_5404048_SNP [dm6]	G	A	2.192e^-4	0.776	UTR_3_PRIME SK
2L	2772196	2L_2772196_INS [dm3] 2L_2772196_INS [dm6]	A	ACTTT	2.200e^-4	0.776	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
2L	16551129	2L_16551129_SNP [dm3] 2L_16551129_SNP [dm6]	G	T	2.208e^-4	0.776	INTRON CG42389
3L	14661975	3L_14661975_DEL [dm3] 3L_14668875_DEL [dm6]	GG	G	2.212e^-4	0.776	INTRON dlp
2L	2772198	2L_2772198_SNP [dm3] 2L_2772198_SNP [dm6]	A	T	2.219e^-4	0.776	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
3L	2832023	3L_2832023_SNP [dm3] 3L_2832023_SNP [dm6]	G	A	2.227e^-4	0.776	INTRON CG43444
4	1175318	4_1175318_SNP [dm3] 4_1154692_SNP [dm6]	G	A	2.234e^-4	0.776	INTRON CG32017 & 1 other	transposable element FlyBase
X	13662533	X_13662533_INS [dm3] X_13768500_INS [dm6]	C	CCAA	2.236e^-4	0.776	INTRON rdgB	TF binding site mE1_TFBS_inv
X	13662535	X_13662535_SNP [dm3] X_13768502_SNP [dm6]	T	G	2.236e^-4	0.776	INTRON rdgB	TF binding site mE1_TFBS_inv
X	13662550	X_13662550_SNP [dm3] X_13768517_SNP [dm6]	A	G	2.236e^-4	0.776	INTRON rdgB	TF binding site mE1_TFBS_inv
X	13662583	X_13662583_SNP [dm3] X_13768550_SNP [dm6]	G	A	2.236e^-4	0.776	INTRON rdgB	TF binding site mE1_TFBS_inv
2L	10861561	2L_10861561_INS [dm3] 2L_10861561_INS [dm6]	T	TGG	2.240e^-4	0.776	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
2L	4353205	2L_4353205_SNP [dm3] 2L_4353205_SNP [dm6]	C	A	2.240e^-4	0.776	INTRON CG15429	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2L	4353216	2L_4353216_SNP [dm3] 2L_4353216_SNP [dm6]	G	A	2.240e^-4	0.776	INTRON CG15429	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4063169	2L_4063169_SNP [dm3] 2L_4063169_SNP [dm6]	G	A	2.252e^-4	0.778	INTRON ed
4	649780	4_649780_SNP [dm3] 4_629154_SNP [dm6]	A	T	2.260e^-4	0.778	UPSTREAM CG1732 INTERGENIC	transposable element FlyBase
3R	7996107	3R_7996107_SNP [dm3] 3R_12170385_SNP [dm6]	A	T	2.271e^-4	0.778	INTERGENIC
4	851617	4_851617_SNP [dm3] 4_830991_SNP [dm6]	A	T	2.271e^-4	0.778	INTRON Sox102F
2L	4428374	2L_4428374_SNP [dm3] 2L_4428374_SNP [dm6]	C	T	2.272e^-4	0.778	INTRON CG15431
2L	1728443	2L_1728443_SNP [dm3] 2L_1728443_SNP [dm6]	C	T	2.277e^-4	0.778	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	18499974	2R_18499974_SNP [dm3] 2R_22612469_SNP [dm6]	T	C	2.281e^-4	0.778	SYNONYMOUS_CODING CG4329
2R	5400904	2R_5400904_SNP [dm3] 2R_9513399_SNP [dm6]	T	C	2.281e^-4	0.778	INTRON brp
3R	17759365	3R_17759365_SNP [dm3] 3R_21933643_SNP [dm6]	A	G	2.289e^-4	0.778	INTERGENIC
3R	23378094	3R_23378094_SNP [dm3] 3R_27552372_SNP [dm6]	A	G	2.291e^-4	0.778	INTRON Klp98A	TF binding site mE1_TFBS_cad
2R	17450855	2R_17450855_SNP [dm3] 2R_21563350_SNP [dm6]	C	T	2.298e^-4	0.778	INTRON CG10440
3L	10895491	3L_10895491_SNP [dm3] 3L_10902391_SNP [dm6]	C	T	2.302e^-4	0.778	INTERGENIC
2R	13106218	2R_13106218_SNP [dm3] 2R_17218713_SNP [dm6]	G	C	2.307e^-4	0.778	INTRON mbl
2R	6280794	2R_6280794_SNP [dm3] 2R_10393289_SNP [dm6]	G	C	2.311e^-4	0.778	INTRON CG42732
3R	5125187	3R_5125187_SNP [dm3] 3R_9299465_SNP [dm6]	G	T	2.320e^-4	0.778	INTRON CG8861
2L	920185	2L_920185_SNP [dm3] 2L_920185_SNP [dm6]	C	T	2.322e^-4	0.778	INTERGENIC
3R	10402109	3R_10402109_SNP [dm3] 3R_14576387_SNP [dm6]	G	A	2.324e^-4	0.778	SYNONYMOUS_CODING CG44094 UPSTREAM CG7987 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10947200	2R_10947200_INS [dm3] 2R_15059695_INS [dm6]	A	ACATA	2.325e^-4	0.778	INTERGENIC
X	15158730	X_15158730_SNP [dm3] X_15264697_SNP [dm6]	T	C	2.326e^-4	0.778	INTERGENIC
X	9119525	X_9119525_SNP [dm3] X_9225492_SNP [dm6]	G	T	2.334e^-4	0.779	NON_SYNONYMOUS_CODING CG15370	TF binding site mE1_TFBS_cad
2R	17733641	2R_17733641_SNP [dm3] 2R_21846136_SNP [dm6]	G	C	2.337e^-4	0.779	INTERGENIC
3L	3926396	3L_3926396_SNP [dm3] 3L_3926396_SNP [dm6]	T	C	2.348e^-4	0.78	UPSTREAM Eip63F-1 INTRON Eip63F-1
3R	7973853	3R_7973853_SNP [dm3] 3R_12148131_SNP [dm6]	A	T	2.354e^-4	0.78	INTRON dpr15
2L	2772199	2L_2772199_SNP [dm3] 2L_2772199_SNP [dm6]	G	T	2.357e^-4	0.78	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
2L	4418740	2L_4418740_SNP [dm3] 2L_4418740_SNP [dm6]	C	A	2.360e^-4	0.78	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	526704	2L_526704_SNP [dm3] 2L_526704_SNP [dm6]	G	C	2.361e^-4	0.78	INTRON ush	regulatory region REDfly_CRMs
X	9119566	X_9119566_SNP [dm3] X_9225533_SNP [dm6]	A	G	2.365e^-4	0.78	SYNONYMOUS_CODING CG15370	TF binding site mE1_TFBS_cad
3L	2614309	3L_2614309_SNP [dm3] 3L_2614309_SNP [dm6]	G	A	2.368e^-4	0.78	INTRON Pxn
3L	24393026	3L_24393026_SNP [dm3] 3L_24399926_SNP [dm6]	C	A	2.373e^-4	0.78	INTRON nvd
3L	8329485	3L_8329485_SNP [dm3] 3L_8336385_SNP [dm6]	T	A	2.379e^-4	0.781	UPSTREAM Cpr66Cb INTERGENIC
X	20691401	X_20691401_SNP [dm3] X_20820374_SNP [dm6]	G	A	2.394e^-4	0.784	INTRON shakB
3L	10313500	3L_10313500_SNP [dm3] 3L_10320400_SNP [dm6]	C	T	2.401e^-4	0.784	DOWNSTREAM mir-276b INTERGENIC
3R	5377732	3R_5377732_DEL [dm3] 3R_9552010_DEL [dm6]	TT	T	2.405e^-4	0.784	UPSTREAM RnpS1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	4064292	2L_4064292_SNP [dm3] 2L_4064292_SNP [dm6]	C	T	2.407e^-4	0.784	INTRON ed
2L	10861558	2L_10861558_SNP [dm3] 2L_10861558_SNP [dm6]	G	A	2.413e^-4	0.784	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
4	991031	4_991031_SNP [dm3] 4_970405_SNP [dm6]	T	C	2.415e^-4	0.784	INTRON fuss	transposable element FlyBase
2R	20130449	2R_20130449_SNP [dm3] 2R_24242926_SNP [dm6]	C	T	2.426e^-4	0.785	UPSTREAM nord INTERGENIC
2L	19631382	2L_19631382_SNP [dm3] 2L_19631382_SNP [dm6]	G	C	2.428e^-4	0.785	INTRON Lar
3L	3926578	3L_3926578_SNP [dm3] 3L_3926578_SNP [dm6]	C	T	2.431e^-4	0.785	UPSTREAM Eip63F-1 INTRON Eip63F-1
2L	9364937	2L_9364937_SNP [dm3] 2L_9364937_SNP [dm6]	C	A	2.439e^-4	0.786	EXON CR43404
2L	1962977	2L_1962977_SNP [dm3] 2L_1962977_SNP [dm6]	A	G	2.447e^-4	0.788	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	13643690	X_13643690_SNP [dm3] X_13749657_SNP [dm6]	T	C	2.453e^-4	0.788	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3660417	2L_3660417_SNP [dm3] 2L_3660417_SNP [dm6]	G	A	2.455e^-4	0.788	INTERGENIC
3L	5338886	3L_5338886_SNP [dm3] 3L_5345786_SNP [dm6]	A	G	2.468e^-4	0.79	INTRON lama
2L	5288346	2L_5288346_SNP [dm3] 2L_5288346_SNP [dm6]	G	T	2.470e^-4	0.79	UPSTREAM vri EXON CR44743 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13916871	2L_13916871_SNP [dm3] 2L_13916871_SNP [dm6]	G	T	2.476e^-4	0.79	INTRON Ance-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	959370	2L_959370_SNP [dm3] 2L_959370_SNP [dm6]	C	A	2.483e^-4	0.791	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17295665	2R_17295665_SNP [dm3] 2R_21408160_SNP [dm6]	G	C	2.485e^-4	0.791	INTRON Sdc
2L	4064189	2L_4064189_SNP [dm3] 2L_4064189_SNP [dm6]	C	T	2.510e^-4	0.796	INTRON ed
3L	15562084	3L_15562084_SNP [dm3] 3L_15568984_SNP [dm6]	C	T	2.511e^-4	0.796	INTRON CG6498	TF binding site mE1_TFBS_chinmo
2R	9177992	2R_9177992_SNP [dm3] 2R_13290487_SNP [dm6]	A	T	2.518e^-4	0.797	INTRON Dh31-R
4	954021	4_954021_SNP [dm3] 4_933395_SNP [dm6]	A	T	2.522e^-4	0.797	INTERGENIC	transposable element FlyBase
2R	18672945	2R_18672945_SNP [dm3] 2R_22785440_SNP [dm6]	G	A	2.531e^-4	0.798	DOWNSTREAM CG30270 INTRON CG42260
2L	4064194	2L_4064194_INS [dm3] 2L_4064194_INS [dm6]	T	TT	2.553e^-4	0.802	INTRON ed
4	1065327	4_1065327_SNP [dm3] 4_1044701_SNP [dm6]	A	T	2.553e^-4	0.802	INTRON CaMKII
2L	11375608	2L_11375608_SNP [dm3] 2L_11375608_SNP [dm6]	C	G	2.559e^-4	0.802	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	14438651	2L_14438651_SNP [dm3] 2L_14438651_SNP [dm6]	G	T	2.563e^-4	0.802	INTERGENIC
X	9119573	X_9119573_SNP [dm3] X_9225540_SNP [dm6]	T	C	2.563e^-4	0.802	SYNONYMOUS_CODING CG15370	TF binding site mE1_TFBS_cad
3L	1359160	3L_1359160_SNP [dm3] 3L_1359160_SNP [dm6]	A	C	2.568e^-4	0.802	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1962706	2L_1962706_SNP [dm3] 2L_1962706_SNP [dm6]	T	G	2.578e^-4	0.802	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10162679	3R_10162679_SNP [dm3] 3R_14336957_SNP [dm6]	T	C	2.584e^-4	0.802	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	10162681	3R_10162681_SNP [dm3] 3R_14336959_SNP [dm6]	T	C	2.584e^-4	0.802	INTRON NK7.1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3L	16694226	3L_16694226_SNP [dm3] 3L_16701126_SNP [dm6]	G	A	2.584e^-4	0.802	INTRON Lasp & 1 other
2R	5027061	2R_5027061_SNP [dm3] 2R_9139556_SNP [dm6]	C	T	2.596e^-4	0.803	UTR_5_PRIME CG8788 & 1 other INTRON CG8788 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3R	16749678	3R_16749678_SNP [dm3] 3R_20923956_SNP [dm6]	A	C	2.604e^-4	0.803	INTRON CG31191 & 1 other	TF binding site mE1_TFBS_inv
X	14036959	X_14036959_SNP [dm3] X_14142926_SNP [dm6]	C	T	2.604e^-4	0.803	DOWNSTREAM CR44658 INTERGENIC
3L	15302355	3L_15302355_SNP [dm3] 3L_15309255_SNP [dm6]	T	G	2.605e^-4	0.803	SYNONYMOUS_CODING CG7255 INTRON CG7255	TF binding site mE1_TFBS_sens
2L	7126701	2L_7126701_SNP [dm3] 2L_7126701_SNP [dm6]	C	T	2.622e^-4	0.804	INTRON Pvf3
2L	1962713	2L_1962713_SNP [dm3] 2L_1962713_SNP [dm6]	T	C	2.631e^-4	0.804	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1962714	2L_1962714_SNP [dm3] 2L_1962714_SNP [dm6]	T	C	2.631e^-4	0.804	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1962728	2L_1962728_SNP [dm3] 2L_1962728_SNP [dm6]	T	C	2.631e^-4	0.804	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5524162	2L_5524162_SNP [dm3] 2L_5524162_SNP [dm6]	T	A	2.636e^-4	0.804	UTR_5_PRIME CG6907 UPSTREAM CG6907 & 1 other	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2858642	3L_2858642_SNP [dm3] 3L_2858642_SNP [dm6]	A	G	2.637e^-4	0.804	INTRON CG43444
3R	7081564	3R_7081564_INS [dm3] 3R_11255842_INS [dm6]	C	CAGTTTGGC	2.640e^-4	0.804	EXON CR43283
2R	13561976	2R_13561976_SNP [dm3] 2R_17674471_SNP [dm6]	G	A	2.646e^-4	0.804	SYNONYMOUS_CODING Sema-1b
2R	13561983	2R_13561983_SNP [dm3] 2R_17674478_SNP [dm6]	G	A	2.646e^-4	0.804	SYNONYMOUS_CODING Sema-1b
3R	13436918	3R_13436918_SNP [dm3] 3R_17611196_SNP [dm6]	A	G	2.658e^-4	0.805	SYNONYMOUS_CODING Edg91 DOWNSTREAM CG14329
2R	14881695	2R_14881695_DEL [dm3] 2R_18994190_DEL [dm6]	TGT	T	2.659e^-4	0.805	UPSTREAM snoRNA:abba-a INTRON tn
2L	918495	2L_918495_SNP [dm3] 2L_918495_SNP [dm6]	G	C	2.668e^-4	0.805	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	1577700	2R_1577700_SNP [dm3] 2R_5690195_SNP [dm6]	A	G	2.671e^-4	0.805	INTRON scaf
4	942317	4_942317_SNP [dm3] 4_921691_SNP [dm6]	C	T	2.679e^-4	0.805	INTRON eIF4G	transposable element FlyBase
3L	5918064	3L_5918064_SNP [dm3] 3L_5924964_SNP [dm6]	T	C	2.680e^-4	0.805	SYNONYMOUS_CODING Vap-33B
3R	14589503	3R_14589503_SNP [dm3] 3R_18763781_SNP [dm6]	G	A	2.685e^-4	0.805	INTRON CG7720
2L	6775878	2L_6775878_SNP [dm3] 2L_6775878_SNP [dm6]	T	C	2.688e^-4	0.805	SYNONYMOUS_CODING CG17378	TF binding site mE1_TFBS_cad
3L	19321304	3L_19321304_SNP [dm3] 3L_19328204_SNP [dm6]	G	A	2.692e^-4	0.805	INTRON pip
2R	16222462	2R_16222462_SNP [dm3] 2R_20334957_SNP [dm6]	C	T	2.694e^-4	0.805	INTERGENIC
X	2676855	X_2676855_SNP [dm3] X_2782822_SNP [dm6]	A	G	2.712e^-4	0.808	DOWNSTREAM CG32795 INTRON kirre
2L	4064501	2L_4064501_SNP [dm3] 2L_4064501_SNP [dm6]	T	A	2.715e^-4	0.808	INTRON ed
3R	10973892	3R_10973892_SNP [dm3] 3R_15148170_SNP [dm6]	T	C	2.721e^-4	0.808	UPSTREAM GlyS INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	1785827	X_1785827_DEL [dm3] X_1891794_DEL [dm6]	AATGGA	A	2.721e^-4	0.808	UTR_3_PRIME arm DOWNSTREAM mRpL16
3R	5377704	3R_5377704_DEL [dm3] 3R_9551982_DEL [dm6]	TA	T	2.732e^-4	0.808	UPSTREAM RnpS1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3R	13912536	3R_13912536_SNP [dm3] 3R_18086814_SNP [dm6]	A	G	2.737e^-4	0.808	INTERGENIC
2L	17845998	2L_17845998_SNP [dm3] 2L_17845998_SNP [dm6]	T	A	2.740e^-4	0.808	INTRON CadN2
3R	22460306	3R_22460306_SNP [dm3] 3R_26634584_SNP [dm6]	C	G	2.740e^-4	0.808	UTR_3_PRIME TwdlH UPSTREAM TwdlR	TF binding site mE1_TFBS_chinmo
3L	24300757	3L_24300757_INS [dm3] 3L_24307657_INS [dm6]	A	AT	2.743e^-4	0.808	INTERGENIC
2R	7652713	2R_7652713_SNP [dm3] 2R_11765208_SNP [dm6]	G	T	2.754e^-4	0.81	INTRON ths
3L	18848062	3L_18848062_SNP [dm3] 3L_18854962_SNP [dm6]	A	C	2.772e^-4	0.812	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13678112	2L_13678112_SNP [dm3] 2L_13678112_SNP [dm6]	T	C	2.773e^-4	0.812	UTR_3_PRIME CG31814
2R	10866377	2R_10866377_SNP [dm3] 2R_14978872_SNP [dm6]	A	G	2.774e^-4	0.812	SYNONYMOUS_CODING ckn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	9184335	X_9184335_SNP [dm3] X_9290302_SNP [dm6]	C	A	2.787e^-4	0.813	INTRON lz	TF binding site mE1_TFBS_Kr
3R	13912543	3R_13912543_SNP [dm3] 3R_18086821_SNP [dm6]	A	T	2.790e^-4	0.813	INTERGENIC
X	21290223	X_21290223_SNP [dm3] X_21419196_SNP [dm6]	A	G	2.791e^-4	0.813	INTERGENIC
3R	13487196	3R_13487196_SNP [dm3] 3R_17661474_SNP [dm6]	C	A	2.808e^-4	0.816	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
3R	5377750	3R_5377750_SNP [dm3] 3R_9552028_SNP [dm6]	C	T	2.811e^-4	0.816	UPSTREAM RnpS1 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	5995501	X_5995501_SNP [dm3] X_6101468_SNP [dm6]	G	A	2.817e^-4	0.816	SYNONYMOUS_CODING Nep1	TF binding site mE1_TFBS_chinmo
3R	11384734	3R_11384734_SNP [dm3] 3R_15559012_SNP [dm6]	G	C	2.819e^-4	0.816	INTERGENIC
2L	2318520	2L_2318520_SNP [dm3] 2L_2318520_SNP [dm6]	C	A	2.840e^-4	0.82	INTRON CG9967 & 1 other
2L	1535990	2L_1535990_SNP [dm3] 2L_1535990_SNP [dm6]	C	T	2.842e^-4	0.82	INTERGENIC
2R	8145339	2R_8145339_SNP [dm3] 2R_12257834_SNP [dm6]	A	G	2.849e^-4	0.82	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
3L	12321140	3L_12321140_SNP [dm3] 3L_12328040_SNP [dm6]	T	C	2.850e^-4	0.82	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	869796	2L_869796_SNP [dm3] 2L_869796_SNP [dm6]	A	G	2.871e^-4	0.825	UTR_5_PRIME dbe UPSTREAM PNUTS	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	23370638	3R_23370638_SNP [dm3] 3R_27544916_SNP [dm6]	T	C	2.878e^-4	0.825	SYNONYMOUS_CODING Gr98c
3L	9851543	3L_9851543_SNP [dm3] 3L_9858443_SNP [dm6]	A	G	2.882e^-4	0.825	SYNONYMOUS_CODING CG10809	TF binding site mE1_TFBS_chinmo
3L	8997391	3L_8997391_SNP [dm3] 3L_9004291_SNP [dm6]	C	T	2.882e^-4	0.825	UPSTREAM Doc3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	2536235	2L_2536235_SNP [dm3] 2L_2536235_SNP [dm6]	T	C	2.891e^-4	0.826	INTERGENIC
3L	22396404	3L_22396404_SNP [dm3] 3L_22403304_SNP [dm6]	A	G	2.895e^-4	0.826	INTRON Ten-m	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15004509	3L_15004509_SNP [dm3] 3L_15011409_SNP [dm6]	C	T	2.906e^-4	0.827	NON_SYNONYMOUS_CODING Reck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	989329	3L_989329_SNP [dm3] 3L_989329_SNP [dm6]	A	G	2.908e^-4	0.827	SYNONYMOUS_CODING Glut1 UTR_3_PRIME Glut1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2L	9653315	2L_9653315_SNP [dm3] 2L_9653315_SNP [dm6]	T	C	2.949e^-4	0.832	SYNONYMOUS_CODING Apoltp
4	806036	4_806036_SNP [dm3] 4_785410_SNP [dm6]	T	A	2.950e^-4	0.832	INTRON MED26	transposable element FlyBase
3R	22191897	3R_22191897_SNP [dm3] 3R_26366175_SNP [dm6]	A	G	2.950e^-4	0.832	INTERGENIC
2L	5524844	2L_5524844_SNP [dm3] 2L_5524844_SNP [dm6]	C	T	2.954e^-4	0.832	SYNONYMOUS_CODING CG6907 UPSTREAM CG7371 DOWNSTREAM CR44793	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18591709	2R_18591709_SNP [dm3] 2R_22704204_SNP [dm6]	A	T	2.954e^-4	0.832	UPSTREAM Obp58b DOWNSTREAM Obp59a INTRON CG30259
2L	4400470	2L_4400470_SNP [dm3] 2L_4400470_SNP [dm6]	G	T	2.955e^-4	0.832	UTR_3_PRIME l_2_k05819 UPSTREAM CG33003 DOWNSTREAM l_2_k05819
X	7897091	X_7897091_SNP [dm3] X_8003058_SNP [dm6]	A	G	2.960e^-4	0.832	INTRON Tbh
2R	17107804	2R_17107804_SNP [dm3] 2R_21220299_SNP [dm6]	C	T	2.968e^-4	0.832	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	918490	2L_918490_DEL [dm3] 2L_918490_DEL [dm6]	AT	A	2.976e^-4	0.832	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2R	17625514	2R_17625514_SNP [dm3] 2R_21738009_SNP [dm6]	A	G	2.978e^-4	0.832	INTERGENIC
2L	5293228	2L_5293228_SNP [dm3] 2L_5293228_SNP [dm6]	C	T	2.979e^-4	0.832	INTRON vri	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	3186876	3L_3186876_SNP [dm3] 3L_3186876_SNP [dm6]	C	T	2.983e^-4	0.832	SYNONYMOUS_CODING CG32284 UPSTREAM CG14957 DOWNSTREAM CG42494
4	1009575	4_1009575_SNP [dm3] 4_988949_SNP [dm6]	A	T	2.989e^-4	0.832	UPSTREAM toy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	9179584	2R_9179584_SNP [dm3] 2R_13292079_SNP [dm6]	A	G	2.989e^-4	0.832	INTRON Dh31-R
2R	18278879	2R_18278879_SNP [dm3] 2R_22391374_SNP [dm6]	C	A	3.014e^-4	0.836	SYNONYMOUS_CODING CG13506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11004388	3L_11004388_SNP [dm3] 3L_11011288_SNP [dm6]	A	G	3.018e^-4	0.836	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	5503514	3L_5503514_SNP [dm3] 3L_5510414_SNP [dm6]	C	A	3.020e^-4	0.836	NON_SYNONYMOUS_CODING CG34342
3L	13449722	3L_13449722_SNP [dm3] 3L_13456622_SNP [dm6]	C	T	3.023e^-4	0.836	SYNONYMOUS_CODING CG10116 INTRON CG10738	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15258361	3L_15258361_SNP [dm3] 3L_15265261_SNP [dm6]	G	A	3.025e^-4	0.836	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15174377	2R_15174377_SNP [dm3] 2R_19286872_SNP [dm6]	T	G	3.036e^-4	0.836	UPSTREAM CG10474 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18120199	3L_18120199_DEL [dm3] 3L_18127099_DEL [dm6]	GGTTTTGTCC	G	3.055e^-4	0.836	INTERGENIC
2L	5289750	2L_5289750_SNP [dm3] 2L_5289750_SNP [dm6]	A	G	3.055e^-4	0.836	INTRON vri	TF binding site BDTNP1_TFBS_dl
3R	25284708	3R_25284708_SNP [dm3] 3R_29458986_SNP [dm6]	C	T	3.056e^-4	0.836	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
4	1015374	4_1015374_SNP [dm3] 4_994748_SNP [dm6]	C	T	3.058e^-4	0.836	INTRON toy	TF binding site BDTNP1_TFBS_dl
2R	18759520	2R_18759520_SNP [dm3] 2R_22871997_SNP [dm6]	C	T	3.063e^-4	0.836	SYNONYMOUS_CODING CG13532	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5028422	2R_5028422_SNP [dm3] 2R_9140917_SNP [dm6]	C	T	3.063e^-4	0.836	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	14585496	3R_14585496_SNP [dm3] 3R_18759774_SNP [dm6]	G	A	3.067e^-4	0.836	SYNONYMOUS_CODING CG7720 UPSTREAM CG14299
3R	6115509	3R_6115509_SNP [dm3] 3R_10289787_SNP [dm6]	T	C	3.080e^-4	0.836	UPSTREAM CG43143 INTRON CG43143
3L	11202822	3L_11202822_SNP [dm3] 3L_11209722_SNP [dm6]	G	A	3.084e^-4	0.836	SYNONYMOUS_CODING Ube3a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens
3R	7416712	3R_7416712_SNP [dm3] 3R_11590990_SNP [dm6]	T	G	3.089e^-4	0.836	UTR_3_PRIME Jupiter UPSTREAM CG6791
3L	5341118	3L_5341118_SNP [dm3] 3L_5348018_SNP [dm6]	G	A	3.098e^-4	0.836	INTRON lama
4	944082	4_944082_INS [dm3] 4_923456_INS [dm6]	A	AA	3.102e^-4	0.836	INTRON eIF4G
3L	21828128	3L_21828128_SNP [dm3] 3L_21835028_SNP [dm6]	T	A	3.104e^-4	0.836	INTRON Nopp140	TF binding site mE1_TFBS_cad
2L	276598	2L_276598_SNP [dm3] 2L_276598_SNP [dm6]	A	G	3.104e^-4	0.836	UPSTREAM smo INTRON CG17078	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	11533067	2R_11533067_SNP [dm3] 2R_15645562_SNP [dm6]	A	G	3.107e^-4	0.836	INTRON CG42524	TF binding site BDTNP1_TFBS_hb
2R	6270859	2R_6270859_SNP [dm3] 2R_10383354_SNP [dm6]	T	A	3.109e^-4	0.836	INTRON CG42732
3R	3778799	3R_3778799_SNP [dm3] 3R_7953077_SNP [dm6]	G	A	3.113e^-4	0.836	INTRON dsx
2L	19367438	2L_19367438_DEL [dm3] 2L_19367438_DEL [dm6]	GG	G	3.121e^-4	0.836	INTERGENIC
3R	25008229	3R_25008229_SNP [dm3] 3R_29182507_SNP [dm6]	A	C	3.124e^-4	0.836	INTRON CG14509
3L	19064554	3L_19064554_INS [dm3] 3L_19071454_INS [dm6]	A	AA	3.130e^-4	0.836	INTRON Mkp3
X	21311136	X_21311136_SNP [dm3] X_21440109_SNP [dm6]	T	C	3.131e^-4	0.836	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
X	21311137	X_21311137_SNP [dm3] X_21440110_SNP [dm6]	C	T	3.131e^-4	0.836	DOWNSTREAM CG42343 INTRON CG42343	TF binding site BDTNP1_TFBS_dl
2R	6989450	2R_6989450_SNP [dm3] 2R_11101945_SNP [dm6]	A	G	3.132e^-4	0.836	INTRON luna	TF binding site mE1_TFBS_cad
3R	26092656	3R_26092656_SNP [dm3] 3R_30266934_SNP [dm6]	A	T	3.153e^-4	0.838	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	8411221	3R_8411221_SNP [dm3] 3R_12585499_SNP [dm6]	T	A	3.155e^-4	0.838	INTRON Octbeta2R
3L	21593398	3L_21593398_SNP [dm3] 3L_21600298_SNP [dm6]	C	G	3.158e^-4	0.838	INTRON TfAP-2
3L	2870463	3L_2870463_SNP [dm3] 3L_2870463_SNP [dm6]	C	T	3.158e^-4	0.838	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1411093	3L_1411093_SNP [dm3] 3L_1411093_SNP [dm6]	A	G	3.165e^-4	0.839	UTR_5_PRIME CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3951902	3L_3951902_SNP [dm3] 3L_3951902_SNP [dm6]	T	A	3.182e^-4	0.842	INTRON CG14984	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8153983	2L_8153983_SNP [dm3] 2L_8153983_SNP [dm6]	C	T	3.192e^-4	0.843	SYNONYMOUS_CODING CG43394 INTRON CG8552	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8997292	3L_8997292_SNP [dm3] 3L_9004192_SNP [dm6]	C	A	3.196e^-4	0.843	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15559971	3R_15559971_SNP [dm3] 3R_19734249_SNP [dm6]	T	C	3.202e^-4	0.844	INTRON GluClalpha
2R	14881690	2R_14881690_SNP [dm3] 2R_18994185_SNP [dm6]	G	T	3.213e^-4	0.845	UPSTREAM snoRNA:abba-a INTRON tn
3R	15117608	3R_15117608_SNP [dm3] 3R_19291886_SNP [dm6]	G	A	3.226e^-4	0.847	INTERGENIC
4	1048312	4_1048312_SNP [dm3] 4_1027686_SNP [dm6]	A	T	3.229e^-4	0.847	UPSTREAM CR44031 & 1 other DOWNSTREAM CG11077 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6586790	2L_6586790_SNP [dm3] 2L_6586790_SNP [dm6]	A	G	3.259e^-4	0.853	UTR_5_PRIME CG11319
3R	13161240	3R_13161240_SNP [dm3] 3R_17335518_SNP [dm6]	C	T	3.270e^-4	0.853	INTRON beat-IIa
2L	6580268	2L_6580268_SNP [dm3] 2L_6580268_SNP [dm6]	C	A	3.272e^-4	0.853	INTRON CG11319
2R	1629616	2R_1629616_SNP [dm3] 2R_5742111_SNP [dm6]	C	G	3.275e^-4	0.853	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	15764719	3L_15764719_SNP [dm3] 3L_15771619_SNP [dm6]	C	G	3.279e^-4	0.853	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15920696	3R_15920696_SNP [dm3] 3R_20094974_SNP [dm6]	G	T	3.281e^-4	0.853	INTERGENIC
3R	26198565	3R_26198565_SNP [dm3] 3R_30372843_SNP [dm6]	T	C	3.281e^-4	0.853	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	8026724	2L_8026724_SNP [dm3] 2L_8026724_SNP [dm6]	C	T	3.301e^-4	0.857	SYNONYMOUS_CODING Tg DOWNSTREAM CG7367
3R	26198563	3R_26198563_SNP [dm3] 3R_30372841_SNP [dm6]	A	T	3.340e^-4	0.861	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	16221820	2R_16221820_SNP [dm3] 2R_20334315_SNP [dm6]	T	C	3.351e^-4	0.861	INTERGENIC
2R	10168628	2R_10168628_SNP [dm3] 2R_14281123_SNP [dm6]	A	T	3.356e^-4	0.861	INTRON Ih	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1323487	2L_1323487_SNP [dm3] 2L_1323487_SNP [dm6]	A	G	3.357e^-4	0.861	INTERGENIC
2L	1323488	2L_1323488_SNP [dm3] 2L_1323488_SNP [dm6]	A	G	3.357e^-4	0.861	INTERGENIC
4	642066	4_642066_SNP [dm3] 4_621440_SNP [dm6]	C	A	3.360e^-4	0.861	UTR_3_PRIME Eph DOWNSTREAM Eph
2R	17578453	2R_17578453_SNP [dm3] 2R_21690948_SNP [dm6]	C	T	3.367e^-4	0.861	NON_SYNONYMOUS_CODING CG42497 UTR_5_PRIME Tim10 UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	23526901	3L_23526901_SNP [dm3] 3L_23533801_SNP [dm6]	A	G	3.373e^-4	0.861	INTERGENIC	transposable element FlyBase
3L	23571545	3L_23571545_SNP [dm3] 3L_23578445_SNP [dm6]	A	T	3.373e^-4	0.861	INTRON AGO3
3L	17624822	3L_17624822_SNP [dm3] 3L_17631722_SNP [dm6]	G	C	3.378e^-4	0.861	DOWNSTREAM CG7510 EXON CR44566
3L	9851009	3L_9851009_SNP [dm3] 3L_9857909_SNP [dm6]	G	T	3.382e^-4	0.861	UTR_3_PRIME CG10809
3L	2887019	3L_2887019_DEL [dm3] 3L_2887019_DEL [dm6]	ATA	A	3.388e^-4	0.861	INTRON spz5
2L	9626683	2L_9626683_SNP [dm3] 2L_9626683_SNP [dm6]	A	T	3.393e^-4	0.861	INTERGENIC
2L	843633	2L_843633_SNP [dm3] 2L_843633_SNP [dm6]	T	A	3.394e^-4	0.861	UPSTREAM drongo INTRON drongo
3R	24162893	3R_24162893_SNP [dm3] 3R_28337171_SNP [dm6]	G	T	3.401e^-4	0.861	UTR_3_PRIME Gfat2 UPSTREAM larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	10025756	2L_10025756_SNP [dm3] 2L_10025756_SNP [dm6]	A	T	3.410e^-4	0.861	UPSTREAM CG13127 INTERGENIC
2R	8144628	2R_8144628_SNP [dm3] 2R_12257123_SNP [dm6]	G	A	3.410e^-4	0.861	UPSTREAM Vha36-2 INTERGENIC
2L	5288402	2L_5288402_SNP [dm3] 2L_5288402_SNP [dm6]	G	T	3.411e^-4	0.861	UPSTREAM vri DOWNSTREAM CR44742 INTRON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17955197	3L_17955197_SNP [dm3] 3L_17962097_SNP [dm6]	A	T	3.415e^-4	0.861	UPSTREAM Eip75B INTRON Eip75B
2L	9626847	2L_9626847_SNP [dm3] 2L_9626847_SNP [dm6]	C	T	3.417e^-4	0.861	INTERGENIC
3L	5240434	3L_5240434_SNP [dm3] 3L_5247334_SNP [dm6]	G	A	3.417e^-4	0.861	INTRON shep
3L	4687223	3L_4687223_SNP [dm3] 3L_4687223_SNP [dm6]	G	A	3.419e^-4	0.861	UTR_5_PRIME axo DOWNSTREAM CG7514
3R	14850883	3R_14850883_SNP [dm3] 3R_19025161_SNP [dm6]	T	A	3.425e^-4	0.861	SYNONYMOUS_CODING CG14285 DOWNSTREAM CG14286
X	19960319	X_19960319_SNP [dm3] X_20066286_SNP [dm6]	C	T	3.427e^-4	0.861	INTERGENIC
2L	1728450	2L_1728450_SNP [dm3] 2L_1728450_SNP [dm6]	C	G	3.433e^-4	0.861	UTR_5_PRIME Eno UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	13436605	3R_13436605_SNP [dm3] 3R_17610883_SNP [dm6]	C	A	3.438e^-4	0.861	UTR_3_PRIME Edg91 DOWNSTREAM CG14329
2R	18129918	2R_18129918_INS [dm3] 2R_22242413_INS [dm6]	T	TTATCTATATTT...	3.443e^-4	0.861	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3R	5121365	3R_5121365_SNP [dm3] 3R_9295643_SNP [dm6]	A	T	3.447e^-4	0.861	INTRON CG8861
3L	4339244	3L_4339244_SNP [dm3] 3L_4339244_SNP [dm6]	A	G	3.450e^-4	0.861	INTRON Cip4
3R	26486268	3R_26486268_SNP [dm3] 3R_30660546_SNP [dm6]	G	T	3.476e^-4	0.866	INTERGENIC
3L	15953078	3L_15953078_DEL [dm3] 3L_15959978_DEL [dm6]	GGTAATCAGGAATTCGGCG...	G	3.479e^-4	0.866	CODON_DELETION CG17032 DOWNSTREAM l_3_72Ab
2L	11884053	2L_11884053_SNP [dm3] 2L_11884053_SNP [dm6]	T	A	3.487e^-4	0.866	INTRON Pde1c
3L	2001586	3L_2001586_SNP [dm3] 3L_2001586_SNP [dm6]	G	C	3.489e^-4	0.866	INTERGENIC
2R	17640239	2R_17640239_SNP [dm3] 2R_21752734_SNP [dm6]	T	C	3.500e^-4	0.866	INTERGENIC
2R	5028335	2R_5028335_SNP [dm3] 2R_9140830_SNP [dm6]	G	A	3.509e^-4	0.866	UTR_5_PRIME CG44286 UPSTREAM CG44286 INTRON CG8788 & 1 other
3R	14501987	3R_14501987_SNP [dm3] 3R_18676265_SNP [dm6]	A	T	3.510e^-4	0.866	UTR_3_PRIME CG7705 INTRON CG7705	TF binding site mE1_TFBS_cad
4	704287	4_704287_SNP [dm3] 4_683661_SNP [dm6]	A	C	3.526e^-4	0.866	INTRON CG11360	transposable element FlyBase
3R	8202449	3R_8202449_DEL [dm3] 3R_12376727_DEL [dm6]	TT	T	3.528e^-4	0.866	UPSTREAM GstD6 DOWNSTREAM GstD5 INTERGENIC
4	831859	4_831859_INS [dm3] 4_811233_INS [dm6]	G	GGCAAATTG	3.529e^-4	0.866	INTRON Sox102F	transposable element FlyBase
3L	11095515	3L_11095515_SNP [dm3] 3L_11102415_SNP [dm6]	G	C	3.532e^-4	0.866	SYNONYMOUS_CODING Elo68alpha UPSTREAM Elo68beta
3R	23122439	3R_23122439_SNP [dm3] 3R_27296717_SNP [dm6]	T	G	3.534e^-4	0.866	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	15158727	X_15158727_SNP [dm3] X_15264694_SNP [dm6]	T	C	3.540e^-4	0.866	INTERGENIC
2L	918428	2L_918428_SNP [dm3] 2L_918428_SNP [dm6]	T	G	3.545e^-4	0.866	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
3L	3928216	3L_3928216_SNP [dm3] 3L_3928216_SNP [dm6]	T	C	3.550e^-4	0.866	INTRON Eip63F-1
2R	5735380	2R_5735380_SNP [dm3] 2R_9847875_SNP [dm6]	A	T	3.551e^-4	0.866	UPSTREAM CG1671 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	3790488	2L_3790488_SNP [dm3] 2L_3790488_SNP [dm6]	A	C	3.556e^-4	0.866	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9653102	2L_9653102_SNP [dm3] 2L_9653102_SNP [dm6]	A	G	3.561e^-4	0.866	SYNONYMOUS_CODING Apoltp
2L	9653123	2L_9653123_SNP [dm3] 2L_9653123_SNP [dm6]	C	T	3.561e^-4	0.866	SYNONYMOUS_CODING Apoltp
2R	11958362	2R_11958362_SNP [dm3] 2R_16070857_SNP [dm6]	T	C	3.565e^-4	0.866	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5288429	2L_5288429_SNP [dm3] 2L_5288429_SNP [dm6]	C	T	3.573e^-4	0.867	SPLICE_SITE_REGION CR44743 UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7412326	3L_7412326_SNP [dm3] 3L_7419226_SNP [dm6]	T	C	3.576e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	6661360	3L_6661360_SNP [dm3] 3L_6668260_SNP [dm6]	A	G	3.586e^-4	0.867	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	16179355	3R_16179355_SNP [dm3] 3R_20353633_SNP [dm6]	A	C	3.593e^-4	0.867	INTERGENIC
2L	1962750	2L_1962750_INS [dm3] 2L_1962750_INS [dm6]	T	TGAAAGGCTTT...	3.595e^-4	0.867	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14258221	2L_14258221_SNP [dm3] 2L_14258221_SNP [dm6]	T	C	3.602e^-4	0.867	INTERGENIC
2R	6459857	2R_6459857_SNP [dm3] 2R_10572352_SNP [dm6]	G	T	3.611e^-4	0.867	INTRON psq
3R	14443197	3R_14443197_SNP [dm3] 3R_18617475_SNP [dm6]	A	T	3.618e^-4	0.867	SYNONYMOUS_CODING CG7695 INTRON qin & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	13132809	2L_13132809_SNP [dm3] 2L_13132809_SNP [dm6]	C	T	3.620e^-4	0.867	SYNONYMOUS_CODING CG5122
2L	12040120	2L_12040120_SNP [dm3] 2L_12040120_SNP [dm6]	G	A	3.620e^-4	0.867	SYNONYMOUS_CODING CG6766 DOWNSTREAM CG6785	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17158551	X_17158551_SNP [dm3] X_17264518_SNP [dm6]	A	T	3.621e^-4	0.867	UPSTREAM f INTRON f
4	798906	4_798906_DEL [dm3] 4_778280_DEL [dm6]	AA	A	3.626e^-4	0.867	DOWNSTREAM MED26 INTERGENIC
3L	10895528	3L_10895528_SNP [dm3] 3L_10902428_SNP [dm6]	C	T	3.637e^-4	0.867	INTERGENIC
2L	6554890	2L_6554890_SNP [dm3] 2L_6554890_SNP [dm6]	A	T	3.641e^-4	0.867	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4064218	2L_4064218_SNP [dm3] 2L_4064218_SNP [dm6]	G	A	3.644e^-4	0.867	INTRON ed
2R	4869755	2R_4869755_SNP [dm3] 2R_8982250_SNP [dm6]	T	C	3.647e^-4	0.867	INTRON CG8213
2R	9267064	2R_9267064_SNP [dm3] 2R_13379559_SNP [dm6]	C	T	3.652e^-4	0.867	INTERGENIC
3L	8997221	3L_8997221_SNP [dm3] 3L_9004121_SNP [dm6]	G	A	3.657e^-4	0.867	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10621661	2L_10621661_SNP [dm3] 2L_10621661_SNP [dm6]	C	T	3.658e^-4	0.867	INTRON Trim9
2L	19230345	2L_19230345_SNP [dm3] 2L_19230345_SNP [dm6]	T	C	3.666e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
2R	18341790	2R_18341790_SNP [dm3] 2R_22454285_SNP [dm6]	T	C	3.669e^-4	0.867	UPSTREAM CG10384 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6637124	2R_6637124_SNP [dm3] 2R_10749619_SNP [dm6]	T	A	3.672e^-4	0.867	INTRON CG33144
2R	8145258	2R_8145258_SNP [dm3] 2R_12257753_SNP [dm6]	A	G	3.676e^-4	0.867	SYNONYMOUS_CODING Vha36-2	TF binding site mE1_TFBS_cad
2R	2959119	2R_2959119_INS [dm3] 2R_7071614_INS [dm6]	T	TTGTATCGGGTTCTTCCCTG...	3.700e^-4	0.867	UTR_3_PRIME CG12831 UPSTREAM tRNA:CR30299	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	3524204	3L_3524204_SNP [dm3] 3L_3524204_SNP [dm6]	C	G	3.701e^-4	0.867	UPSTREAM CR45043 INTRON Eip63E
3R	19470088	3R_19470088_DEL [dm3] 3R_23644366_DEL [dm6]	CTC	C	3.704e^-4	0.867	INTRON CG31145
3L	6606828	3L_6606828_SNP [dm3] 3L_6613728_SNP [dm6]	T	G	3.709e^-4	0.867	UTR_5_PRIME CG8398 INTRON CG8398
2L	8079737	2L_8079737_SNP [dm3] 2L_8079737_SNP [dm6]	G	T	3.712e^-4	0.867	INTRON Mcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8079755	2L_8079755_SNP [dm3] 2L_8079755_SNP [dm6]	C	T	3.712e^-4	0.867	SPLICE_SITE_REGION Mcr INTRON Mcr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10504675	3R_10504675_SNP [dm3] 3R_14678953_SNP [dm6]	C	G	3.718e^-4	0.867	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3790481	2L_3790481_SNP [dm3] 2L_3790481_SNP [dm6]	G	A	3.723e^-4	0.867	INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	13040280	3R_13040280_SNP [dm3] 3R_17214558_SNP [dm6]	T	C	3.726e^-4	0.867	INTERGENIC
3L	8314839	3L_8314839_SNP [dm3] 3L_8321739_SNP [dm6]	T	C	3.732e^-4	0.867	INTRON CG13670
3R	1382895	3R_1382895_SNP [dm3] 3R_5557173_SNP [dm6]	G	C	3.735e^-4	0.867	NON_SYNONYMOUS_CODING Snm1 DOWNSTREAM Pi4KIIalpha
3R	1405968	3R_1405968_SNP [dm3] 3R_5580246_SNP [dm6]	G	T	3.735e^-4	0.867	SYNONYMOUS_CODING CG2926 UTR_3_PRIME CG2926
3L	14806229	3L_14806229_SNP [dm3] 3L_14813129_SNP [dm6]	A	T	3.740e^-4	0.867	INTRON CG17839	TF binding site mE1_TFBS_inv
2L	10991686	2L_10991686_SNP [dm3] 2L_10991686_SNP [dm6]	G	A	3.740e^-4	0.867	SYNONYMOUS_CODING CG16833
3L	3581314	3L_3581314_SNP [dm3] 3L_3581314_SNP [dm6]	C	T	3.743e^-4	0.867	INTRON Eip63E
2L	15942902	2L_15942902_SNP [dm3] 2L_15942902_SNP [dm6]	C	T	3.757e^-4	0.867	DOWNSTREAM CG12448 INTRON beat-Ib
2R	17332631	2R_17332631_SNP [dm3] 2R_21445126_SNP [dm6]	A	G	3.762e^-4	0.867	INTRON Sdc
3R	5125153	3R_5125153_SNP [dm3] 3R_9299431_SNP [dm6]	G	C	3.763e^-4	0.867	INTRON CG8861
3L	12515093	3L_12515093_SNP [dm3] 3L_12521993_SNP [dm6]	A	G	3.765e^-4	0.867	SYNONYMOUS_CODING Gcn5	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16834316	X_16834316_SNP [dm3] X_16940283_SNP [dm6]	T	A	3.770e^-4	0.867	DOWNSTREAM CG13001 INTRON wus
4	949731	4_949731_SNP [dm3] 4_929105_SNP [dm6]	T	A	3.772e^-4	0.867	INTRON eIF4G
2R	17589038	2R_17589038_SNP [dm3] 2R_21701533_SNP [dm6]	A	T	3.795e^-4	0.869	START_GAINED HmgD UTR_5_PRIME HmgD INTRON HmgZ	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2L	17113827	2L_17113827_SNP [dm3] 2L_17113827_SNP [dm6]	T	A	3.799e^-4	0.869	INTERGENIC
3R	15664508	3R_15664508_SNP [dm3] 3R_19838786_SNP [dm6]	G	A	3.805e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	3148322	3L_3148322_SNP [dm3] 3L_3148322_SNP [dm6]	T	C	3.809e^-4	0.869	START_GAINED CG12082 UTR_5_PRIME CG12082 UPSTREAM BtbVII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13161147	3R_13161147_SNP [dm3] 3R_17335425_SNP [dm6]	G	T	3.819e^-4	0.869	INTRON beat-IIa
3R	24337980	3R_24337980_SNP [dm3] 3R_28512258_SNP [dm6]	C	T	3.824e^-4	0.869	SYNONYMOUS_CODING Dhc98D
2R	13561952	2R_13561952_SNP [dm3] 2R_17674447_SNP [dm6]	T	C	3.827e^-4	0.869	NON_SYNONYMOUS_CODING Sema-1b
2R	13561953	2R_13561953_SNP [dm3] 2R_17674448_SNP [dm6]	A	G	3.827e^-4	0.869	SYNONYMOUS_CODING Sema-1b
2L	9608168	2L_9608168_SNP [dm3] 2L_9608168_SNP [dm6]	G	A	3.827e^-4	0.869	UPSTREAM gcm2 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19837209	3R_19837209_SNP [dm3] 3R_24011487_SNP [dm6]	A	G	3.838e^-4	0.869	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
2L	634316	2L_634316_SNP [dm3] 2L_634316_SNP [dm6]	G	A	3.847e^-4	0.869	INTERGENIC
X	19582432	X_19582432_SNP [dm3] X_19688399_SNP [dm6]	G	A	3.847e^-4	0.869	SYNONYMOUS_CODING CG14227 DOWNSTREAM Ubqn	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11958352	2R_11958352_SNP [dm3] 2R_16070847_SNP [dm6]	A	G	3.858e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5236813	2R_5236813_SNP [dm3] 2R_9349308_SNP [dm6]	G	A	3.865e^-4	0.869	DOWNSTREAM Or45a INTRON CG13954 & 1 other
3R	14385223	3R_14385223_DEL [dm3] 3R_18559501_DEL [dm6]	TAACT	A	3.868e^-4	0.869	UPSTREAM CG7691 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20691322	X_20691322_SNP [dm3] X_20820295_SNP [dm6]	C	T	3.882e^-4	0.869	INTRON shakB
3R	6178936	3R_6178936_SNP [dm3] 3R_10353214_SNP [dm6]	A	G	3.882e^-4	0.869	INTRON jumu	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16180872	3R_16180872_SNP [dm3] 3R_20355150_SNP [dm6]	C	T	3.885e^-4	0.869	INTERGENIC
2R	18591711	2R_18591711_SNP [dm3] 2R_22704206_SNP [dm6]	T	C	3.888e^-4	0.869	UPSTREAM Obp58b DOWNSTREAM Obp59a INTRON CG30259
3R	1215612	3R_1215612_SNP [dm3] 3R_5389890_SNP [dm6]	A	T	3.898e^-4	0.869	INTRON kkv	regulatory region REDfly_CRMs
X	3329396	X_3329396_SNP [dm3] X_3435363_SNP [dm6]	A	G	3.903e^-4	0.869	SYNONYMOUS_CODING CG14269 INTRON CR44999 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9914085	2L_9914085_SNP [dm3] 2L_9914085_SNP [dm6]	A	C	3.903e^-4	0.869	SYNONYMOUS_CODING Srp54	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	11229191	3R_11229191_SNP [dm3] 3R_15403469_SNP [dm6]	A	G	3.904e^-4	0.869	SYNONYMOUS_CODING CG6125 DOWNSTREAM Rbp
3L	11583915	3L_11583915_SNP [dm3] 3L_11590815_SNP [dm6]	A	C	3.908e^-4	0.869	DOWNSTREAM CG33268 & 1 other INTERGENIC
2L	2764804	2L_2764804_SNP [dm3] 2L_2764804_SNP [dm6]	C	T	3.910e^-4	0.869	SYNONYMOUS_CODING CG3077 DOWNSTREAM Trn-SR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	11213798	3L_11213798_SNP [dm3] 3L_11220698_SNP [dm6]	T	C	3.913e^-4	0.869	INTRON CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	15559970	3R_15559970_SNP [dm3] 3R_19734248_SNP [dm6]	A	T	3.914e^-4	0.869	INTRON GluClalpha
3R	5210557	3R_5210557_SNP [dm3] 3R_9384835_SNP [dm6]	C	T	3.937e^-4	0.869	INTRON FER
3L	9987895	3L_9987895_DEL [dm3] 3L_9994795_DEL [dm6]	GGT	A	3.954e^-4	0.869	INTRON dpr6
3R	10974271	3R_10974271_SNP [dm3] 3R_15148549_SNP [dm6]	T	C	3.959e^-4	0.869	INTERGENIC
3L	6064983	3L_6064983_SNP [dm3] 3L_6071883_SNP [dm6]	C	A	3.961e^-4	0.869	UPSTREAM CG6602 DOWNSTREAM CG42269 INTERGENIC
2R	16190692	2R_16190692_SNP [dm3] 2R_20303187_SNP [dm6]	T	G	3.969e^-4	0.869	UPSTREAM CR44641 DOWNSTREAM CR44640 INTERGENIC
2R	17332520	2R_17332520_SNP [dm3] 2R_21445015_SNP [dm6]	G	A	3.986e^-4	0.869	INTRON Sdc
3L	10879712	3L_10879712_SNP [dm3] 3L_10886612_SNP [dm6]	T	A	3.987e^-4	0.869	UPSTREAM CG6404 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15559974	3R_15559974_SNP [dm3] 3R_19734252_SNP [dm6]	T	A	3.991e^-4	0.869	INTRON GluClalpha
3R	15559975	3R_15559975_SNP [dm3] 3R_19734253_SNP [dm6]	A	T	3.991e^-4	0.869	INTRON GluClalpha
4	612297	4_612297_SNP [dm3] 4_591671_SNP [dm6]	C	T	4.001e^-4	0.869	INTERGENIC	transposable element FlyBase
2L	922940	2L_922940_SNP [dm3] 2L_922940_SNP [dm6]	A	T	4.004e^-4	0.869	UTR_5_PRIME CG4341	TF binding site mE1_TFBS_chinmo
2L	13280507	2L_13280507_SNP [dm3] 2L_13280507_SNP [dm6]	A	G	4.011e^-4	0.869	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_inv
3R	13161077	3R_13161077_SNP [dm3] 3R_17335355_SNP [dm6]	G	C	4.015e^-4	0.869	INTRON beat-IIa
3R	23068272	3R_23068272_SNP [dm3] 3R_27242550_SNP [dm6]	G	T	4.015e^-4	0.869	UTR_3_PRIME CG18766 DOWNSTREAM CG17991
4	610419	4_610419_SNP [dm3] 4_589793_SNP [dm6]	G	T	4.024e^-4	0.869	DOWNSTREAM CG1909 INTERGENIC
2R	16612502	2R_16612502_SNP [dm3] 2R_20724997_SNP [dm6]	C	T	4.026e^-4	0.869	INTRON dpr
2R	16612521	2R_16612521_SNP [dm3] 2R_20725016_SNP [dm6]	T	C	4.026e^-4	0.869	INTRON dpr
3R	13816959	3R_13816959_SNP [dm3] 3R_17991237_SNP [dm6]	T	A	4.034e^-4	0.869	INTRON cpo
3L	12210384	3L_12210384_SNP [dm3] 3L_12217284_SNP [dm6]	G	A	4.034e^-4	0.869	INTRON app
3L	23576670	3L_23576670_SNP [dm3] 3L_23583570_SNP [dm6]	C	T	4.040e^-4	0.869	INTRON AGO3
2L	5288317	2L_5288317_INS [dm3] 2L_5288317_INS [dm6]	C	CT	4.047e^-4	0.869	UPSTREAM vri EXON CR44743 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	5288323	2L_5288323_INS [dm3] 2L_5288323_INS [dm6]	C	CA	4.047e^-4	0.869	UPSTREAM vri EXON CR44743 & 1 other	TF binding site BDTNP1_TFBS_dl
2L	5288447	2L_5288447_SNP [dm3] 2L_5288447_SNP [dm6]	C	T	4.047e^-4	0.869	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5288448	2L_5288448_SNP [dm3] 2L_5288448_SNP [dm6]	C	T	4.047e^-4	0.869	UPSTREAM vri DOWNSTREAM CR44742 EXON CR44743	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6554899	2L_6554899_SNP [dm3] 2L_6554899_SNP [dm6]	C	T	4.048e^-4	0.869	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4418864	2L_4418864_SNP [dm3] 2L_4418864_SNP [dm6]	A	T	4.054e^-4	0.869	DOWNSTREAM tRNA:CR31963 INTRON CG15431
2L	13489059	2L_13489059_SNP [dm3] 2L_13489059_SNP [dm6]	A	T	4.056e^-4	0.869	INTRON CG42784
3L	12210560	3L_12210560_SNP [dm3] 3L_12217460_SNP [dm6]	T	C	4.058e^-4	0.869	INTRON app
3L	13587109	3L_13587109_SNP [dm3] 3L_13594009_SNP [dm6]	T	A	4.059e^-4	0.869	INTRON bru-3
3L	13587110	3L_13587110_SNP [dm3] 3L_13594010_SNP [dm6]	C	T	4.059e^-4	0.869	INTRON bru-3
3L	18229669	3L_18229669_SNP [dm3] 3L_18236569_SNP [dm6]	C	A	4.070e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3391126	2L_3391126_SNP [dm3] 2L_3391126_SNP [dm6]	T	C	4.072e^-4	0.869	INTERGENIC
3L	17640445	3L_17640445_SNP [dm3] 3L_17647345_SNP [dm6]	T	A	4.077e^-4	0.869	UPSTREAM CG43085 DOWNSTREAM Ndfip INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_zfh1
2L	12178543	2L_12178543_SNP [dm3] 2L_12178543_SNP [dm6]	C	A	4.078e^-4	0.869	UPSTREAM atilla INTRON aret	TF binding site mE1_TFBS_HSA
2L	9916372	2L_9916372_SNP [dm3] 2L_9916372_SNP [dm6]	C	T	4.086e^-4	0.869	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885
3R	10504684	3R_10504684_SNP [dm3] 3R_14678962_SNP [dm6]	G	C	4.087e^-4	0.869	INTRON Meltrin	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
4	1151633	4_1151633_SNP [dm3] 4_1131007_SNP [dm6]	C	T	4.087e^-4	0.869	INTRON CG11155
3L	20356190	3L_20356190_SNP [dm3] 3L_20363090_SNP [dm6]	C	A	4.095e^-4	0.869	NON_SYNONYMOUS_CODING Toll-9	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12035667	3R_12035667_INS [dm3] 3R_16209945_INS [dm6]	A	AAAGTGCACA	4.117e^-4	0.869	UPSTREAM CR45638 DOWNSTREAM CR45640 & 1 other INTERGENIC
X	16834272	X_16834272_DEL [dm3] X_16940239_DEL [dm6]	AATA	A	4.121e^-4	0.869	DOWNSTREAM CG13001 INTRON wus
3L	1115109	3L_1115109_SNP [dm3] 3L_1115109_SNP [dm6]	A	T	4.133e^-4	0.869	INTERGENIC
3R	24029999	3R_24029999_SNP [dm3] 3R_28204277_SNP [dm6]	A	C	4.139e^-4	0.869	INTRON CG34354
3L	4339344	3L_4339344_SNP [dm3] 3L_4339344_SNP [dm6]	A	G	4.140e^-4	0.869	INTRON Cip4
3R	15168536	3R_15168536_SNP [dm3] 3R_19342814_SNP [dm6]	T	A	4.140e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	2001617	3L_2001617_SNP [dm3] 3L_2001617_SNP [dm6]	A	G	4.140e^-4	0.869	INTERGENIC
X	16834298	X_16834298_SNP [dm3] X_16940265_SNP [dm6]	A	T	4.142e^-4	0.869	DOWNSTREAM CG13001 INTRON wus
2L	9627149	2L_9627149_SNP [dm3] 2L_9627149_SNP [dm6]	T	C	4.143e^-4	0.869	INTERGENIC
X	12994606	X_12994606_SNP [dm3] X_13100573_SNP [dm6]	T	G	4.159e^-4	0.869	INTRON CG43313
X	20945631	X_20945631_SNP [dm3] X_21074604_SNP [dm6]	C	A	4.162e^-4	0.869	INTRON bves
3L	15764870	3L_15764870_SNP [dm3] 3L_15771770_SNP [dm6]	T	A	4.165e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	10510971	3R_10510971_SNP [dm3] 3R_14685249_SNP [dm6]	T	A	4.168e^-4	0.869	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl
3R	11470685	3R_11470685_SNP [dm3] 3R_15644963_SNP [dm6]	T	C	4.170e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8669797	2R_8669797_SNP [dm3] 2R_12782292_SNP [dm6]	C	G	4.190e^-4	0.869	INTRON sca	TF binding site mE1_TFBS_sens
2L	15942859	2L_15942859_SNP [dm3] 2L_15942859_SNP [dm6]	C	T	4.193e^-4	0.869	DOWNSTREAM CG12448 INTRON beat-Ib
2L	15942862	2L_15942862_SNP [dm3] 2L_15942862_SNP [dm6]	T	A	4.193e^-4	0.869	DOWNSTREAM CG12448 INTRON beat-Ib
2L	15942865	2L_15942865_SNP [dm3] 2L_15942865_SNP [dm6]	T	A	4.193e^-4	0.869	DOWNSTREAM CG12448 INTRON beat-Ib
3R	8604967	3R_8604967_SNP [dm3] 3R_12779245_SNP [dm6]	G	C	4.196e^-4	0.869	INTRON beat-Vc
2R	6985880	2R_6985880_INS [dm3] 2R_11098375_INS [dm6]	G	GG	4.198e^-4	0.869	INTRON luna
2L	9916456	2L_9916456_SNP [dm3] 2L_9916456_SNP [dm6]	G	A	4.211e^-4	0.869	SYNONYMOUS_CODING yip2 DOWNSTREAM CG5885	TF binding site mE1_TFBS_chinmo
3R	14803902	3R_14803902_SNP [dm3] 3R_18978180_SNP [dm6]	C	T	4.214e^-4	0.869	DOWNSTREAM CG12269 & 2 others INTERGENIC
2R	11525974	2R_11525974_INS [dm3] 2R_15638469_INS [dm6]	A	ACATATA	4.215e^-4	0.869	INTRON CG42524
3R	25284641	3R_25284641_MNP [dm3] 3R_29458919_MNP [dm6]	TGT	CAA	4.220e^-4	0.869	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	14551404	3L_14551404_SNP [dm3] 3L_14558304_SNP [dm6]	T	C	4.228e^-4	0.869	INTERGENIC
2R	13561914	2R_13561914_SNP [dm3] 2R_17674409_SNP [dm6]	C	T	4.234e^-4	0.869	SYNONYMOUS_CODING Sema-1b
3L	5839885	3L_5839885_SNP [dm3] 3L_5846785_SNP [dm6]	T	C	4.239e^-4	0.869	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	925751	2L_925751_INS [dm3] 2L_925751_INS [dm6]	A	AA	4.241e^-4	0.869	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12844588	3R_12844588_SNP [dm3] 3R_17018866_SNP [dm6]	A	G	4.241e^-4	0.869	UTR_3_PRIME AdSL INTRON Pxd
4	529534	4_529534_SNP [dm3] 4_508908_SNP [dm6]	C	A	4.244e^-4	0.869	INTRON zfh2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	715933	2L_715933_INS [dm3] 2L_715933_INS [dm6]	A	ACGATCT	4.248e^-4	0.869	UPSTREAM ds DOWNSTREAM CR44988 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11565817	3L_11565817_INS [dm3] 3L_11572717_INS [dm6]	T	TTAAAAATAA	4.248e^-4	0.869	UTR_3_PRIME CG33267 DOWNSTREAM CG33490
2L	3197280	2L_3197280_SNP [dm3] 2L_3197280_SNP [dm6]	T	A	4.253e^-4	0.869	INTRON CG34393
3R	26198556	3R_26198556_SNP [dm3] 3R_30372834_SNP [dm6]	T	A	4.260e^-4	0.869	DOWNSTREAM hdc INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	15302376	3L_15302376_SNP [dm3] 3L_15309276_SNP [dm6]	C	T	4.272e^-4	0.869	SYNONYMOUS_CODING CG7255 INTRON CG7255	TF binding site mE1_TFBS_sens
3L	15302379	3L_15302379_SNP [dm3] 3L_15309279_SNP [dm6]	A	G	4.272e^-4	0.869	SYNONYMOUS_CODING CG7255 INTRON CG7255	TF binding site mE1_TFBS_sens
2L	12832617	2L_12832617_SNP [dm3] 2L_12832617_SNP [dm6]	T	A	4.274e^-4	0.869	INTERGENIC
3R	10973862	3R_10973862_SNP [dm3] 3R_15148140_SNP [dm6]	A	T	4.275e^-4	0.869	UPSTREAM GlyS INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5517142	3L_5517142_SNP [dm3] 3L_5524042_SNP [dm6]	G	A	4.276e^-4	0.869	INTRON Lkr
3L	5517143	3L_5517143_SNP [dm3] 3L_5524043_SNP [dm6]	C	T	4.276e^-4	0.869	INTRON Lkr
3R	17910479	3R_17910479_SNP [dm3] 3R_22084757_SNP [dm6]	T	C	4.282e^-4	0.869	DOWNSTREAM CG5778 INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	14196045	2R_14196045_DEL [dm3] 2R_18308540_DEL [dm6]	ACTGCTAAGTGAGACGCACT...	A	4.283e^-4	0.869	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_cnc
2L	6554885	2L_6554885_SNP [dm3] 2L_6554885_SNP [dm6]	A	G	4.292e^-4	0.869	DOWNSTREAM Osm6 INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19433923	X_19433923_SNP [dm3] X_19539890_SNP [dm6]	C	T	4.293e^-4	0.869	INTRON CG32532	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15768471	3L_15768471_DEL [dm3] 3L_15775371_DEL [dm6]	GG	G	4.294e^-4	0.869	INTERGENIC
3R	25474554	3R_25474554_SNP [dm3] 3R_29648832_SNP [dm6]	T	G	4.296e^-4	0.869	INTRON Dop1R2
2R	19233254	2R_19233254_SNP [dm3] 2R_23345731_SNP [dm6]	A	G	4.297e^-4	0.869	UPSTREAM CG9863 INTRON CG3502	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16192526	3R_16192526_SNP [dm3] 3R_20366804_SNP [dm6]	C	T	4.330e^-4	0.87	INTERGENIC
2L	3790076	2L_3790076_SNP [dm3] 2L_3790076_SNP [dm6]	T	C	4.337e^-4	0.87	SPLICE_SITE_REGION CG3921 UTR_5_PRIME CG3921 INTRON CG3921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12186593	3L_12186593_SNP [dm3] 3L_12193493_SNP [dm6]	A	G	4.343e^-4	0.87	SPLICE_SITE_REGION thoc6 SYNONYMOUS_CODING thoc6 DOWNSTREAM Est-P	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3L	11253596	3L_11253596_SNP [dm3] 3L_11260496_SNP [dm6]	T	C	4.345e^-4	0.87	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	23499039	3L_23499039_SNP [dm3] 3L_23505939_SNP [dm6]	C	T	4.352e^-4	0.87	INTERGENIC	transposable element FlyBase
3R	24833941	3R_24833941_INS [dm3] 3R_29008219_INS [dm6]	C	CC	4.357e^-4	0.87	DOWNSTREAM mir-4947 INTRON wat
2L	921452	2L_921452_SNP [dm3] 2L_921452_SNP [dm6]	A	G	4.358e^-4	0.87	INTERGENIC
2L	5288345	2L_5288345_SNP [dm3] 2L_5288345_SNP [dm6]	G	T	4.362e^-4	0.87	UPSTREAM vri EXON CR44743 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5036111	2R_5036111_SNP [dm3] 2R_9148606_SNP [dm6]	G	C	4.363e^-4	0.87	UPSTREAM CG30345 DOWNSTREAM CG30344 INTERGENIC
2L	927778	2L_927778_SNP [dm3] 2L_927778_SNP [dm6]	A	G	4.365e^-4	0.87	INTRON CG4341
2R	15460241	2R_15460241_SNP [dm3] 2R_19572736_SNP [dm6]	C	A	4.367e^-4	0.87	INTRON sm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2762307	2L_2762307_SNP [dm3] 2L_2762307_SNP [dm6]	C	T	4.367e^-4	0.87	SYNONYMOUS_CODING Trn-SR
3R	19837214	3R_19837214_SNP [dm3] 3R_24011492_SNP [dm6]	A	G	4.370e^-4	0.87	INTRON KrT95D	TF binding site BDTNP1_TFBS_twi
2L	6557676	2L_6557676_SNP [dm3] 2L_6557676_SNP [dm6]	G	A	4.376e^-4	0.87	UPSTREAM CoVb & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	11898312	X_11898312_SNP [dm3] X_12004279_SNP [dm6]	C	T	4.383e^-4	0.87	UPSTREAM fw INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6272394	2R_6272394_SNP [dm3] 2R_10384889_SNP [dm6]	A	T	4.385e^-4	0.87	INTRON CG42732
2R	6272413	2R_6272413_SNP [dm3] 2R_10384908_SNP [dm6]	A	G	4.385e^-4	0.87	INTRON CG42732
3R	22703801	3R_22703801_SNP [dm3] 3R_26878079_SNP [dm6]	A	G	4.386e^-4	0.87	INTRON CG5500 & 1 other	TF binding site mE1_TFBS_HSA
2L	10751750	2L_10751750_SNP [dm3] 2L_10751750_SNP [dm6]	A	C	4.392e^-4	0.87	INTRON CG17124	TF binding site mE1_TFBS_cad
2R	6270946	2R_6270946_SNP [dm3] 2R_10383441_SNP [dm6]	T	A	4.415e^-4	0.872	INTRON CG42732
2R	6280318	2R_6280318_SNP [dm3] 2R_10392813_SNP [dm6]	C	T	4.415e^-4	0.872	INTRON CG42732
3R	15560008	3R_15560008_SNP [dm3] 3R_19734286_SNP [dm6]	T	A	4.418e^-4	0.872	INTRON GluClalpha
2L	16884009	2L_16884009_SNP [dm3] 2L_16884009_SNP [dm6]	A	C	4.424e^-4	0.872	INTRON CG31743 & 1 other
3R	8152531	3R_8152531_SNP [dm3] 3R_12326809_SNP [dm6]	C	G	4.430e^-4	0.872	UPSTREAM CR45584 INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3L	18199282	3L_18199282_SNP [dm3] 3L_18206182_SNP [dm6]	C	A	4.431e^-4	0.872	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
2L	581720	2L_581720_SNP [dm3] 2L_581720_SNP [dm6]	G	A	4.436e^-4	0.872	INTERGENIC
3R	25850600	3R_25850600_INS [dm3] 3R_30024878_INS [dm6]	T	TAT	4.443e^-4	0.872	INTRON Axn
X	7659881	X_7659881_SNP [dm3] X_7765848_SNP [dm6]	C	T	4.443e^-4	0.872	SYNONYMOUS_CODING Ir7a	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7894538	2L_7894538_SNP [dm3] 2L_7894538_SNP [dm6]	G	A	4.459e^-4	0.872	SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7894708	2L_7894708_SNP [dm3] 2L_7894708_SNP [dm6]	T	C	4.459e^-4	0.872	NON_SYNONYMOUS_CODING Snoo	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16834283	X_16834283_DEL [dm3] X_16940250_DEL [dm6]	CAT	C	4.462e^-4	0.872	DOWNSTREAM CG13001 INTRON wus
3L	3018550	3L_3018550_SNP [dm3] 3L_3018550_SNP [dm6]	G	A	4.469e^-4	0.872	INTERGENIC
3L	14551416	3L_14551416_SNP [dm3] 3L_14558316_SNP [dm6]	C	T	4.473e^-4	0.872	INTERGENIC
2R	9135779	2R_9135779_SNP [dm3] 2R_13248274_SNP [dm6]	T	C	4.474e^-4	0.872	DOWNSTREAM Mp20 & 1 other INTRON Mp20
3R	5121479	3R_5121479_SNP [dm3] 3R_9295757_SNP [dm6]	A	C	4.477e^-4	0.872	INTRON CG8861
2L	924927	2L_924927_SNP [dm3] 2L_924927_SNP [dm6]	T	C	4.483e^-4	0.872	INTRON CG4341
2L	1728474	2L_1728474_SNP [dm3] 2L_1728474_SNP [dm6]	T	C	4.489e^-4	0.873	UPSTREAM Eno & 1 other INTRON Eno	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	12179421	3L_12179421_SNP [dm3] 3L_12186321_SNP [dm6]	A	G	4.496e^-4	0.873	INTRON CG6910
2L	2772239	2L_2772239_SNP [dm3] 2L_2772239_SNP [dm6]	G	C	4.501e^-4	0.873	UPSTREAM CG15399 DOWNSTREAM Syt1 INTERGENIC
3L	10958502	3L_10958502_SNP [dm3] 3L_10965402_SNP [dm6]	A	G	4.504e^-4	0.873	INTERGENIC	TF binding site mE1_TFBS_cad
4	761743	4_761743_SNP [dm3] 4_741117_SNP [dm6]	T	C	4.512e^-4	0.873	INTRON bt
3R	20708979	3R_20708979_SNP [dm3] 3R_24883257_SNP [dm6]	C	T	4.517e^-4	0.873	SYNONYMOUS_CODING CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
4	718955	4_718955_SNP [dm3] 4_698329_SNP [dm6]	A	G	4.536e^-4	0.876	INTRON ey
3L	6977382	3L_6977382_SNP [dm3] 3L_6984282_SNP [dm6]	T	G	4.542e^-4	0.876	SPLICE_SITE_REGION CG32388 & 1 other INTRON CG32388 & 1 other
2R	4488927	2R_4488927_INS [dm3] 2R_8601422_INS [dm6]	A	AAAACTAAATAA...	4.543e^-4	0.876	INTRON rgr	TF binding site BDTNP1_TFBS_dl
3L	3925990	3L_3925990_SNP [dm3] 3L_3925990_SNP [dm6]	T	C	4.553e^-4	0.876	UPSTREAM Eip63F-1 INTRON Eip63F-1
X	16834254	X_16834254_INS [dm3] X_16940221_INS [dm6]	AA	CGTC	4.557e^-4	0.876	DOWNSTREAM CG13001 INTRON wus
X	16834260	X_16834260_MNP [dm3] X_16940227_MNP [dm6]	ACA	TAT	4.557e^-4	0.876	DOWNSTREAM CG13001 INTRON wus
3R	19631961	3R_19631961_DEL [dm3] 3R_23806239_DEL [dm6]	GG	G	4.564e^-4	0.876	INTRON CG33111 & 1 other
3R	25850586	3R_25850586_SNP [dm3] 3R_30024864_SNP [dm6]	C	A	4.568e^-4	0.876	INTRON Axn
3L	15740575	3L_15740575_SNP [dm3] 3L_15747475_SNP [dm6]	T	A	4.610e^-4	0.879	EXON CR45240
3L	2022007	3L_2022007_SNP [dm3] 3L_2022007_SNP [dm6]	T	G	4.617e^-4	0.879	UPSTREAM CG42357 DOWNSTREAM CG42356 INTERGENIC
2R	3523597	2R_3523597_SNP [dm3] 2R_7636092_SNP [dm6]	C	T	4.618e^-4	0.879	UPSTREAM CR45131 & 1 other INTRON CG43340
3L	6661375	3L_6661375_SNP [dm3] 3L_6668275_SNP [dm6]	G	A	4.630e^-4	0.879	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6661396	3L_6661396_SNP [dm3] 3L_6668296_SNP [dm6]	C	G	4.630e^-4	0.879	UPSTREAM CG32395 INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25284768	3R_25284768_SNP [dm3] 3R_29459046_SNP [dm6]	C	T	4.632e^-4	0.879	INTRON Ptp99A EXON CR44022	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_HSA
3R	10162690	3R_10162690_SNP [dm3] 3R_14336968_SNP [dm6]	C	G	4.636e^-4	0.879	INTRON NK7.1	TF binding site mE1_TFBS_kn
2R	18129051	2R_18129051_SNP [dm3] 2R_22241546_SNP [dm6]	G	A	4.639e^-4	0.879	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
3L	11367794	3L_11367794_INS [dm3] 3L_11374694_INS [dm6]	G	GGAG	4.645e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	7001474	3L_7001474_SNP [dm3] 3L_7008374_SNP [dm6]	C	T	4.652e^-4	0.879	INTRON Mp
2R	17412257	2R_17412257_SNP [dm3] 2R_21524752_SNP [dm6]	A	G	4.663e^-4	0.879	INTRON Egfr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
2R	11755992	2R_11755992_SNP [dm3] 2R_15868487_SNP [dm6]	G	A	4.670e^-4	0.879	SYNONYMOUS_CODING Rif1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	927766	2L_927766_SNP [dm3] 2L_927766_SNP [dm6]	G	A	4.679e^-4	0.879	INTRON CG4341
2L	11886499	2L_11886499_DEL [dm3] 2L_11886499_DEL [dm6]	GTGTAAAAATG...	G	4.692e^-4	0.879	INTRON Pde1c
3L	13980235	3L_13980235_SNP [dm3] 3L_13987135_SNP [dm6]	G	A	4.697e^-4	0.879	UTR_3_PRIME CG17362 UPSTREAM CG9040 INTRON CG17364
2L	18504698	2L_18504698_SNP [dm3] 2L_18504698_SNP [dm6]	A	G	4.705e^-4	0.879	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17372895	3R_17372895_SNP [dm3] 3R_21547173_SNP [dm6]	A	G	4.714e^-4	0.879	INTERGENIC
X	7007022	X_7007022_SNP [dm3] X_7112989_SNP [dm6]	A	G	4.725e^-4	0.879	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13513891	3L_13513891_DEL [dm3] 3L_13520791_DEL [dm6]	TTGTTTATGTCAT...	T	4.726e^-4	0.879	INTERGENIC
3R	23496690	3R_23496690_SNP [dm3] 3R_27670968_SNP [dm6]	A	T	4.727e^-4	0.879	INTRON unc80
3L	13316069	3L_13316069_SNP [dm3] 3L_13322969_SNP [dm6]	C	A	4.728e^-4	0.879	INTERGENIC
4	1143803	4_1143803_SNP [dm3] 4_1123177_SNP [dm6]	A	G	4.729e^-4	0.879	UPSTREAM Cals & 1 other INTRON Cals	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Ubx
3L	5466415	3L_5466415_SNP [dm3] 3L_5473315_SNP [dm6]	C	T	4.731e^-4	0.879	INTERGENIC

By genomic position
Variant impact
Gene name

mn_Protein phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results