DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.990e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2L_t	0.09331
In_2R_NS	0.06682
In_3R_Mo	0.02148

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1405 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	926904	2L_926904_SNP [dm3] 2L_926904_SNP [dm6]	T	G	3.707e^-6	0.565	INTRON CG4341
2R	7291780	2R_7291780_SNP [dm3] 2R_11404275_SNP [dm6]	G	A	4.230e^-6	0.565	UPSTREAM tRNA:CR45106 DOWNSTREAM tRNA:CR45107 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2R	11221566	2R_11221566_SNP [dm3] 2R_15334061_SNP [dm6]	G	T	1.187e^-5	0.565	INTRON Hr51	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17369100	2R_17369100_SNP [dm3] 2R_21481595_SNP [dm6]	A	G	1.194e^-5	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1731134	2L_1731134_INS [dm3] 2L_1731134_INS [dm6]	C	CTCC	1.324e^-5	0.565	UTR_3_PRIME CG17652 DOWNSTREAM CG17652 & 1 other	TF binding site mE1_TFBS_cad
2L	926817	2L_926817_SNP [dm3] 2L_926817_SNP [dm6]	A	C	1.373e^-5	0.565	INTRON CG4341
2L	926818	2L_926818_SNP [dm3] 2L_926818_SNP [dm6]	A	C	1.373e^-5	0.565	INTRON CG4341
3R	27146638	3R_27146638_SNP [dm3] 3R_31320916_SNP [dm6]	C	A	1.552e^-5	0.565	INTRON CG34347
2R	17373080	2R_17373080_SNP [dm3] 2R_21485575_SNP [dm6]	C	T	1.668e^-5	0.565	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	926866	2L_926866_INS [dm3] 2L_926866_INS [dm6]	A	ATAAGGCTGGGCA...	1.701e^-5	0.565	INTRON CG4341
2L	14527067	2L_14527067_SNP [dm3] 2L_14527067_SNP [dm6]	A	T	2.228e^-5	0.565	INTERGENIC
3R	20184982	3R_20184982_SNP [dm3] 3R_24359260_SNP [dm6]	T	C	2.384e^-5	0.565	SYNONYMOUS_CODING CG18528
3L	3362739	3L_3362739_SNP [dm3] 3L_3362739_SNP [dm6]	A	T	2.793e^-5	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	13396572	3L_13396572_SNP [dm3] 3L_13403472_SNP [dm6]	A	C	2.905e^-5	0.565	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26662655	3R_26662655_SNP [dm3] 3R_30836933_SNP [dm6]	C	T	2.970e^-5	0.565	INTRON CG15544
2L	9615108	2L_9615108_SNP [dm3] 2L_9615108_SNP [dm6]	T	G	3.098e^-5	0.565	INTRON Trx-2
2R	17593157	2R_17593157_SNP [dm3] 2R_21705652_SNP [dm6]	C	A	3.574e^-5	0.565	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1
3L	9433527	3L_9433527_SNP [dm3] 3L_9440427_SNP [dm6]	A	C	3.609e^-5	0.565	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3
2L	19902228	2L_19902228_SNP [dm3] 2L_19902228_SNP [dm6]	T	C	3.722e^-5	0.565	INTRON sick	TF binding site mE1_TFBS_sens
2R	18014589	2R_18014589_SNP [dm3] 2R_22127084_SNP [dm6]	G	T	3.795e^-5	0.565	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	20399395	X_20399395_SNP [dm3] X_20528368_SNP [dm6]	G	C	4.195e^-5	0.565	DOWNSTREAM CG42579 INTERGENIC
3R	23243428	3R_23243428_SNP [dm3] 3R_27417706_SNP [dm6]	T	G	4.257e^-5	0.565	INTRON side
X	3325848	X_3325848_SNP [dm3] X_3431815_SNP [dm6]	C	A	4.615e^-5	0.565	INTRON CR44999 & 1 other
3R	20357005	3R_20357005_SNP [dm3] 3R_24531283_SNP [dm6]	G	T	4.711e^-5	0.565	NON_SYNONYMOUS_CODING ana1 UPSTREAM CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3473546	X_3473546_SNP [dm3] X_3579513_SNP [dm6]	T	C	4.760e^-5	0.565	INTRON AstA-R1
X	19905457	X_19905457_SNP [dm3] X_20011424_SNP [dm6]	G	T	4.940e^-5	0.565	INTRON Dop2R
X	11121669	X_11121669_SNP [dm3] X_11227636_SNP [dm6]	G	A	5.089e^-5	0.565	INTRON CG44422
3R	12926193	3R_12926193_INS [dm3] 3R_17100471_INS [dm6]	T	TT	5.155e^-5	0.565	INTRON cher
3R	26664460	3R_26664460_SNP [dm3] 3R_30838738_SNP [dm6]	C	T	5.158e^-5	0.565	SYNONYMOUS_CODING CG15544
3L	447633	3L_447633_SNP [dm3] 3L_447633_SNP [dm6]	C	T	5.460e^-5	0.565	INTRON klar	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	1732377	2L_1732377_SNP [dm3] 2L_1732377_SNP [dm6]	C	G	5.510e^-5	0.565	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1732756	2L_1732756_SNP [dm3] 2L_1732756_SNP [dm6]	A	G	5.510e^-5	0.565	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
2L	1733743	2L_1733743_SNP [dm3] 2L_1733743_SNP [dm6]	G	A	5.510e^-5	0.565	INTRON CG17646
3L	454489	3L_454489_SNP [dm3] 3L_454489_SNP [dm6]	C	G	5.577e^-5	0.565	INTRON klar
3L	17432677	3L_17432677_SNP [dm3] 3L_17439577_SNP [dm6]	A	C	5.663e^-5	0.565	UTR_5_PRIME CG18265 INTRON CG18265	TF binding site mE1_TFBS_Trl
X	6110400	X_6110400_SNP [dm3] X_6216367_SNP [dm6]	A	T	5.698e^-5	0.565	DOWNSTREAM Btd INTERGENIC
2R	18013873	2R_18013873_SNP [dm3] 2R_22126368_SNP [dm6]	T	C	5.861e^-5	0.565	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20677349	X_20677349_SNP [dm3] X_20806322_SNP [dm6]	T	C	5.984e^-5	0.565	INTRON shakB	transposable element FlyBase
3L	3779393	3L_3779393_DEL [dm3] 3L_3779393_DEL [dm6]	CAAATAAAGGGGGCT...	C	5.998e^-5	0.565	INTRON CG32264
3R	18691653	3R_18691653_SNP [dm3] 3R_22865931_SNP [dm6]	A	G	6.104e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15269250	2L_15269250_SNP [dm3] 2L_15269250_SNP [dm6]	A	T	6.150e^-5	0.565	INTRON Cul3
3L	12722469	3L_12722469_SNP [dm3] 3L_12729369_SNP [dm6]	G	A	6.512e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14772511	3R_14772511_MNP [dm3] 3R_18946789_MNP [dm6]	AGTTA	TAGCT	6.537e^-5	0.565	INTRON CG42613
3R	14772523	3R_14772523_SNP [dm3] 3R_18946801_SNP [dm6]	A	G	6.537e^-5	0.565	INTRON CG42613
2L	2708316	2L_2708316_SNP [dm3] 2L_2708316_SNP [dm6]	C	G	6.677e^-5	0.565	INTRON CG31690
3L	453265	3L_453265_SNP [dm3] 3L_453265_SNP [dm6]	C	T	6.745e^-5	0.565	NON_SYNONYMOUS_CODING klar UTR_5_PRIME klar INTRON klar
3R	25214505	3R_25214505_SNP [dm3] 3R_29388783_SNP [dm6]	C	T	6.893e^-5	0.565	INTRON Ptp99A
3L	7168997	3L_7168997_SNP [dm3] 3L_7175897_SNP [dm6]	T	C	6.902e^-5	0.565	INTRON Dscam2
2L	10630808	2L_10630808_SNP [dm3] 2L_10630808_SNP [dm6]	A	T	7.036e^-5	0.565	SPLICE_SITE_REGION CG7329 INTRON CG7329	TF binding site mE1_TFBS_sens
X	3473593	X_3473593_SNP [dm3] X_3579560_SNP [dm6]	C	T	7.228e^-5	0.565	INTRON AstA-R1
X	10722629	X_10722629_SNP [dm3] X_10828596_SNP [dm6]	A	T	7.247e^-5	0.565	INTERGENIC
2L	3658308	2L_3658308_SNP [dm3] 2L_3658308_SNP [dm6]	C	T	7.255e^-5	0.565	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	20486140	3R_20486140_SNP [dm3] 3R_24660418_SNP [dm6]	C	T	7.270e^-5	0.565	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_ftz_f1 mE1_TFBS_HSA mE1_TFBS_sens
2R	2786729	2R_2786729_SNP [dm3] 2R_6899224_SNP [dm6]	T	C	7.325e^-5	0.565	INTRON CG30158	TF binding site mE1_TFBS_chinmo
3L	16532511	3L_16532511_SNP [dm3] 3L_16539411_SNP [dm6]	A	G	7.541e^-5	0.565	INTRON CG43373
3R	23179854	3R_23179854_SNP [dm3] 3R_27354132_SNP [dm6]	G	A	7.544e^-5	0.565	INTRON CG42534
3R	7843820	3R_7843820_SNP [dm3] 3R_12018098_SNP [dm6]	G	A	7.732e^-5	0.565	SYNONYMOUS_CODING Spt3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	429445	3L_429445_SNP [dm3] 3L_429445_SNP [dm6]	G	T	7.988e^-5	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	6578595	3L_6578595_SNP [dm3] 3L_6585495_SNP [dm6]	T	C	8.013e^-5	0.565	INTRON CG18769 & 1 other
2L	18504794	2L_18504794_SNP [dm3] 2L_18504794_SNP [dm6]	G	T	8.392e^-5	0.565	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3325830	X_3325830_SNP [dm3] X_3431797_SNP [dm6]	G	A	8.472e^-5	0.565	INTRON CR44999 & 1 other
2R	8922761	2R_8922761_SNP [dm3] 2R_13035256_SNP [dm6]	G	C	8.493e^-5	0.565	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	22057218	3R_22057218_SNP [dm3] 3R_26231496_SNP [dm6]	G	A	8.749e^-5	0.565	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
X	9642416	X_9642416_SNP [dm3] X_9748383_SNP [dm6]	G	A	8.935e^-5	0.565	INTRON Sp1
3R	14801060	3R_14801060_SNP [dm3] 3R_18975338_SNP [dm6]	A	T	9.058e^-5	0.565	INTRON CG42613 & 1 other
3R	14801100	3R_14801100_SNP [dm3] 3R_18975378_SNP [dm6]	G	T	9.058e^-5	0.565	INTRON CG42613 & 1 other
3R	14066117	3R_14066117_SNP [dm3] 3R_18240395_SNP [dm6]	A	G	9.195e^-5	0.565	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156 DOWNSTREAM repo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	18210271	2L_18210271_SNP [dm3] 2L_18210271_SNP [dm6]	C	T	9.314e^-5	0.565	INTRON CG42750
3R	23135969	3R_23135969_SNP [dm3] 3R_27310247_SNP [dm6]	T	A	9.476e^-5	0.565	INTRON CG3339
2R	18005321	2R_18005321_SNP [dm3] 2R_22117816_SNP [dm6]	C	T	9.501e^-5	0.565	INTRON Vrp1
3R	18028940	3R_18028940_SNP [dm3] 3R_22203218_SNP [dm6]	T	A	9.548e^-5	0.565	INTRON SKIP & 1 other	TF binding site mE1_TFBS_sens
2L	7444822	2L_7444822_SNP [dm3] 2L_7444822_SNP [dm6]	G	T	9.593e^-5	0.565	NON_SYNONYMOUS_CODING CG5973 DOWNSTREAM santa-maria
X	3477232	X_3477232_SNP [dm3] X_3583199_SNP [dm6]	C	T	9.970e^-5	0.565	INTRON AstA-R1
2R	18014560	2R_18014560_SNP [dm3] 2R_22127055_SNP [dm6]	A	T	1.019e^-4	0.565	SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6157107	2R_6157107_SNP [dm3] 2R_10269602_SNP [dm6]	C	T	1.066e^-4	0.565	DOWNSTREAM CG12910 INTRON CAP
3L	6569252	3L_6569252_SNP [dm3] 3L_6576152_SNP [dm6]	G	A	1.069e^-4	0.565	INTRON CG18769 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	14527091	2L_14527091_SNP [dm3] 2L_14527091_SNP [dm6]	A	T	1.075e^-4	0.565	INTERGENIC
3R	23524135	3R_23524135_SNP [dm3] 3R_27698413_SNP [dm6]	T	C	1.121e^-4	0.565	NON_SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	21837074	3R_21837074_SNP [dm3] 3R_26011352_SNP [dm6]	A	G	1.132e^-4	0.565	SYNONYMOUS_CODING E_spl_malpha-BFM	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
2R	17369169	2R_17369169_SNP [dm3] 2R_21481664_SNP [dm6]	A	T	1.134e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	16532718	3L_16532718_DEL [dm3] 3L_16539618_DEL [dm6]	TTGTC	T	1.136e^-4	0.565	INTRON CG43373
3R	23929966	3R_23929966_SNP [dm3] 3R_28104244_SNP [dm6]	A	T	1.137e^-4	0.565	INTERGENIC
X	19866244	X_19866244_SNP [dm3] X_19972211_SNP [dm6]	A	G	1.139e^-4	0.565	INTERGENIC
X	19866260	X_19866260_SNP [dm3] X_19972227_SNP [dm6]	T	G	1.139e^-4	0.565	INTERGENIC
X	19866276	X_19866276_SNP [dm3] X_19972243_SNP [dm6]	T	C	1.139e^-4	0.565	INTERGENIC
X	19866299	X_19866299_SNP [dm3] X_19972266_SNP [dm6]	C	A	1.139e^-4	0.565	INTERGENIC
X	19866314	X_19866314_SNP [dm3] X_19972281_SNP [dm6]	T	C	1.139e^-4	0.565	INTERGENIC
3R	24603190	3R_24603190_SNP [dm3] 3R_28777468_SNP [dm6]	T	A	1.149e^-4	0.565	EXON CR44952
3R	23687576	3R_23687576_INS [dm3] 3R_27861854_INS [dm6]	T	TTAGT	1.151e^-4	0.565	INTRON CG34353
3R	23687578	3R_23687578_INS [dm3] 3R_27861856_INS [dm6]	T	TTCC	1.151e^-4	0.565	INTRON CG34353
2R	8531120	2R_8531120_SNP [dm3] 2R_12643615_SNP [dm6]	T	C	1.158e^-4	0.565	INTRON CG8785
3R	15898336	3R_15898336_SNP [dm3] 3R_20072614_SNP [dm6]	A	T	1.181e^-4	0.565	INTERGENIC
3R	7843800	3R_7843800_SNP [dm3] 3R_12018078_SNP [dm6]	T	C	1.188e^-4	0.565	SYNONYMOUS_CODING Spt3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3658400	2L_3658400_SNP [dm3] 2L_3658400_SNP [dm6]	G	A	1.191e^-4	0.565	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	3197807	X_3197807_SNP [dm3] X_3303774_SNP [dm6]	C	T	1.199e^-4	0.565	INTRON dnc
3L	9700402	3L_9700402_SNP [dm3] 3L_9707302_SNP [dm6]	T	G	1.199e^-4	0.565	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	27140341	3R_27140341_SNP [dm3] 3R_31314619_SNP [dm6]	T	G	1.203e^-4	0.565	INTRON CG34347	TF binding site mE1_TFBS_chinmo
2L	7444819	2L_7444819_SNP [dm3] 2L_7444819_SNP [dm6]	T	C	1.210e^-4	0.565	SYNONYMOUS_CODING CG5973 DOWNSTREAM santa-maria
2L	729323	2L_729323_SNP [dm3] 2L_729323_SNP [dm6]	C	T	1.249e^-4	0.565	SYNONYMOUS_CODING Hsp60B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9569807	X_9569807_INS [dm3] X_9675774_INS [dm6]	T	TTT	1.253e^-4	0.565	INTRON nej	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	9839550	2L_9839550_SNP [dm3] 2L_9839550_SNP [dm6]	C	T	1.257e^-4	0.565	INTRON nAChRalpha6	TF binding site mE1_TFBS_chinmo
X	3473535	X_3473535_SNP [dm3] X_3579502_SNP [dm6]	G	A	1.260e^-4	0.565	INTRON AstA-R1
X	3473548	X_3473548_SNP [dm3] X_3579515_SNP [dm6]	C	A	1.260e^-4	0.565	INTRON AstA-R1
3L	14814012	3L_14814012_SNP [dm3] 3L_14820912_SNP [dm6]	T	C	1.264e^-4	0.565	INTRON CG17839
3L	6160191	3L_6160191_SNP [dm3] 3L_6167091_SNP [dm6]	T	G	1.266e^-4	0.565	UTR_3_PRIME CG10289 DOWNSTREAM CG10289
3R	18624736	3R_18624736_SNP [dm3] 3R_22799014_SNP [dm6]	C	T	1.272e^-4	0.565	INTERGENIC
2L	3392990	2L_3392990_SNP [dm3] 2L_3392990_SNP [dm6]	A	G	1.343e^-4	0.565	INTERGENIC
2R	17009567	2R_17009567_SNP [dm3] 2R_21122062_SNP [dm6]	G	T	1.343e^-4	0.565	SYNONYMOUS_CODING ktub	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	10542516	2R_10542516_SNP [dm3] 2R_14655011_SNP [dm6]	T	C	1.356e^-4	0.565	INTERGENIC
3R	15898347	3R_15898347_SNP [dm3] 3R_20072625_SNP [dm6]	G	A	1.361e^-4	0.565	INTERGENIC
3L	837509	3L_837509_SNP [dm3] 3L_837509_SNP [dm6]	C	T	1.380e^-4	0.565	SPLICE_SITE_REGION CG13901 UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA
2L	18339487	2L_18339487_SNP [dm3] 2L_18339487_SNP [dm6]	G	T	1.385e^-4	0.565	INTRON Fas3
3R	27391499	3R_27391499_SNP [dm3] 3R_31565777_SNP [dm6]	G	T	1.385e^-4	0.565	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3R	16446610	3R_16446610_SNP [dm3] 3R_20620888_SNP [dm6]	T	A	1.385e^-4	0.565	UTR_3_PRIME CG5466
X	10039926	X_10039926_SNP [dm3] X_10145893_SNP [dm6]	G	A	1.391e^-4	0.565	INTRON CR44894 & 1 other
2L	5816139	2L_5816139_SNP [dm3] 2L_5816139_SNP [dm6]	G	C	1.395e^-4	0.565	INTERGENIC
2R	14344048	2R_14344048_SNP [dm3] 2R_18456543_SNP [dm6]	A	C	1.396e^-4	0.565	DOWNSTREAM CG30116 INTERGENIC
3L	6160022	3L_6160022_SNP [dm3] 3L_6166922_SNP [dm6]	C	T	1.412e^-4	0.565	UTR_3_PRIME CG10289 DOWNSTREAM CG10289
2L	9590499	2L_9590499_SNP [dm3] 2L_9590499_SNP [dm6]	C	A	1.420e^-4	0.565	SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
3R	26301834	3R_26301834_SNP [dm3] 3R_30476112_SNP [dm6]	A	C	1.441e^-4	0.565	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	26301835	3R_26301835_SNP [dm3] 3R_30476113_SNP [dm6]	T	A	1.441e^-4	0.565	UPSTREAM spdo INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	9574873	3R_9574873_SNP [dm3] 3R_13749151_SNP [dm6]	T	C	1.471e^-4	0.565	INTRON CG34383
2L	1103021	2L_1103021_SNP [dm3] 2L_1103021_SNP [dm6]	A	G	1.482e^-4	0.565	UPSTREAM CG4629 DOWNSTREAM mtRNApol INTERGENIC
X	20228220	X_20228220_SNP [dm3] X_20357193_SNP [dm6]	C	G	1.489e^-4	0.565	INTERGENIC
2L	10630790	2L_10630790_SNP [dm3] 2L_10630790_SNP [dm6]	T	C	1.498e^-4	0.565	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_sens
2L	10630817	2L_10630817_SNP [dm3] 2L_10630817_SNP [dm6]	T	G	1.498e^-4	0.565	INTRON CG7329	TF binding site mE1_TFBS_sens
2L	10630818	2L_10630818_SNP [dm3] 2L_10630818_SNP [dm6]	G	A	1.498e^-4	0.565	INTRON CG7329	TF binding site mE1_TFBS_sens
2L	10630824	2L_10630824_SNP [dm3] 2L_10630824_SNP [dm6]	A	G	1.498e^-4	0.565	INTRON CG7329	TF binding site mE1_TFBS_sens
3L	6948472	3L_6948472_SNP [dm3] 3L_6955372_SNP [dm6]	A	T	1.503e^-4	0.565	UPSTREAM CG9948 INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
2L	18247310	2L_18247310_SNP [dm3] 2L_18247310_SNP [dm6]	C	T	1.503e^-4	0.565	INTRON CG42750
3R	9583745	3R_9583745_SNP [dm3] 3R_13758023_SNP [dm6]	C	A	1.508e^-4	0.565	INTRON CG34383
2L	19913802	2L_19913802_SNP [dm3] 2L_19913802_SNP [dm6]	G	A	1.516e^-4	0.565	UPSTREAM Victoria INTRON sick
3L	837463	3L_837463_SNP [dm3] 3L_837463_SNP [dm6]	G	A	1.516e^-4	0.565	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_HSA
3R	22243929	3R_22243929_SNP [dm3] 3R_26418207_SNP [dm6]	C	T	1.563e^-4	0.565	INTERGENIC
3R	21802091	3R_21802091_SNP [dm3] 3R_25976369_SNP [dm6]	C	T	1.573e^-4	0.565	INTRON CG42261
2L	1730250	2L_1730250_SNP [dm3] 2L_1730250_SNP [dm6]	A	G	1.575e^-4	0.565	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	3477618	X_3477618_SNP [dm3] X_3583585_SNP [dm6]	T	G	1.587e^-4	0.565	INTRON AstA-R1
3R	13657462	3R_13657462_SNP [dm3] 3R_17831740_SNP [dm6]	A	T	1.618e^-4	0.565	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	26663741	3R_26663741_SNP [dm3] 3R_30838019_SNP [dm6]	A	T	1.622e^-4	0.565	INTRON CG15544
2L	15274444	2L_15274444_SNP [dm3] 2L_15274444_SNP [dm6]	C	T	1.632e^-4	0.565	INTRON UK114	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16249156	X_16249156_SNP [dm3] X_16355123_SNP [dm6]	G	T	1.636e^-4	0.565	UTR_3_PRIME sl	TF binding site mE1_TFBS_sens
2L	7014840	2L_7014840_SNP [dm3] 2L_7014840_SNP [dm6]	A	G	1.637e^-4	0.565	UTR_3_PRIME ade3 DOWNSTREAM ade3 & 1 other
3R	16695679	3R_16695679_SNP [dm3] 3R_20869957_SNP [dm6]	A	T	1.638e^-4	0.565	INTERGENIC
3R	18714538	3R_18714538_SNP [dm3] 3R_22888816_SNP [dm6]	A	C	1.643e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	27146568	3R_27146568_SNP [dm3] 3R_31320846_SNP [dm6]	A	G	1.679e^-4	0.565	INTRON CG34347
2R	6824982	2R_6824982_INS [dm3] 2R_10937477_INS [dm6]	T	TGGT	1.687e^-4	0.565	DOWNSTREAM Spn47C INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	6825233	2R_6825233_SNP [dm3] 2R_10937728_SNP [dm6]	A	G	1.687e^-4	0.565	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16860156	3R_16860156_SNP [dm3] 3R_21034434_SNP [dm6]	G	A	1.689e^-4	0.565	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
X	3480086	X_3480086_SNP [dm3] X_3586053_SNP [dm6]	T	A	1.702e^-4	0.565	INTRON AstA-R1
3L	4339097	3L_4339097_SNP [dm3] 3L_4339097_SNP [dm6]	G	T	1.705e^-4	0.565	INTRON Cip4	TF binding site mE1_TFBS_inv
2R	8532653	2R_8532653_INS [dm3] 2R_12645148_INS [dm6]	G	GG	1.713e^-4	0.565	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	11690475	2R_11690475_SNP [dm3] 2R_15802970_SNP [dm6]	C	A	1.714e^-4	0.565	INTRON Zasp52 & 1 other
X	16338314	X_16338314_SNP [dm3] X_16444281_SNP [dm6]	A	G	1.720e^-4	0.565	SYNONYMOUS_CODING rngo DOWNSTREAM eIF-2alpha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16532716	3L_16532716_INS [dm3] 3L_16539616_INS [dm6]	G	GATTCC	1.759e^-4	0.565	INTRON CG43373
3R	18691753	3R_18691753_SNP [dm3] 3R_22866031_SNP [dm6]	A	T	1.759e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9618172	2L_9618172_SNP [dm3] 2L_9618172_SNP [dm6]	A	T	1.774e^-4	0.565	INTRON GlcAT-S
3L	6948430	3L_6948430_SNP [dm3] 3L_6955330_SNP [dm6]	C	T	1.776e^-4	0.565	UPSTREAM CG9948 INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA
3R	25614084	3R_25614084_DEL [dm3] 3R_29788362_DEL [dm6]	AAT	A	1.785e^-4	0.565	UPSTREAM kay INTRON kay
2L	5701566	2L_5701566_SNP [dm3] 2L_5701566_SNP [dm6]	C	T	1.786e^-4	0.565	INTERGENIC
3L	2186244	3L_2186244_SNP [dm3] 3L_2186244_SNP [dm6]	A	G	1.801e^-4	0.565	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_twi
2L	7013438	2L_7013438_SNP [dm3] 2L_7013438_SNP [dm6]	T	C	1.802e^-4	0.565	UTR_5_PRIME CG43322 DOWNSTREAM CG43321	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6948832	3L_6948832_SNP [dm3] 3L_6955732_SNP [dm6]	T	C	1.830e^-4	0.565	UPSTREAM CG9948 & 1 other INTRON CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	5133450	2R_5133450_SNP [dm3] 2R_9245945_SNP [dm6]	T	C	1.833e^-4	0.565	INTRON hig
X	3473843	X_3473843_SNP [dm3] X_3579810_SNP [dm6]	G	A	1.834e^-4	0.565	INTRON AstA-R1
2L	18238837	2L_18238837_SNP [dm3] 2L_18238837_SNP [dm6]	C	T	1.841e^-4	0.565	INTRON CG42750
3R	21963588	3R_21963588_SNP [dm3] 3R_26137866_SNP [dm6]	C	T	1.862e^-4	0.565	DOWNSTREAM CG6142 INTERGENIC
X	6518558	X_6518558_SNP [dm3] X_6624525_SNP [dm6]	C	T	1.883e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518573	X_6518573_SNP [dm3] X_6624540_SNP [dm6]	A	T	1.883e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	6518595	X_6518595_SNP [dm3] X_6624562_SNP [dm6]	A	C	1.883e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	9642409	X_9642409_SNP [dm3] X_9748376_SNP [dm6]	G	T	1.900e^-4	0.565	INTRON Sp1
2L	18238836	2L_18238836_SNP [dm3] 2L_18238836_SNP [dm6]	C	T	1.923e^-4	0.565	INTRON CG42750
2L	18239333	2L_18239333_SNP [dm3] 2L_18239333_SNP [dm6]	T	C	1.923e^-4	0.565	INTRON CG42750
2R	6825293	2R_6825293_SNP [dm3] 2R_10937788_SNP [dm6]	A	T	1.954e^-4	0.565	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	18146038	2L_18146038_SNP [dm3] 2L_18146038_SNP [dm6]	A	G	1.958e^-4	0.565	DOWNSTREAM CR44478 INTRON Socs36E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	18504652	2L_18504652_SNP [dm3] 2L_18504652_SNP [dm6]	A	T	1.958e^-4	0.565	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	18505375	2L_18505375_SNP [dm3] 2L_18505375_SNP [dm6]	A	G	1.958e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	27390817	3R_27390817_SNP [dm3] 3R_31565095_SNP [dm6]	C	A	1.958e^-4	0.565	INTRON nyo
3R	24880058	3R_24880058_SNP [dm3] 3R_29054336_SNP [dm6]	G	A	1.964e^-4	0.565	UPSTREAM CG11843 DOWNSTREAM CG11842 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4872770	3L_4872770_SNP [dm3] 3L_4872770_SNP [dm6]	C	G	1.968e^-4	0.565	SYNONYMOUS_CODING CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6825297	2R_6825297_SNP [dm3] 2R_10937792_SNP [dm6]	A	C	1.969e^-4	0.565	DOWNSTREAM Spn47C INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	6518596	X_6518596_SNP [dm3] X_6624563_SNP [dm6]	G	A	1.971e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14656998	3L_14656998_SNP [dm3] 3L_14663898_SNP [dm6]	C	T	1.979e^-4	0.565	INTRON dlp
3L	13672725	3L_13672725_SNP [dm3] 3L_13679625_SNP [dm6]	T	G	1.989e^-4	0.565	INTRON bru-3
2L	668913	2L_668913_SNP [dm3] 2L_668913_SNP [dm6]	T	C	1.990e^-4	0.565	INTRON ds	TF binding site BDTNP1_TFBS_twi
2R	8907740	2R_8907740_SNP [dm3] 2R_13020235_SNP [dm6]	T	C	1.997e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	18186035	2L_18186035_SNP [dm3] 2L_18186035_SNP [dm6]	T	G	2.011e^-4	0.565	UPSTREAM CR44900 INTRON CG42750	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	3473666	X_3473666_DEL [dm3] X_3579633_DEL [dm6]	AATGCCGTACGCCAA...	A	2.019e^-4	0.565	INTRON AstA-R1
3L	17462531	3L_17462531_SNP [dm3] 3L_17469431_SNP [dm6]	A	G	2.036e^-4	0.565	UPSTREAM CG7589 INTERGENIC
3R	16221922	3R_16221922_SNP [dm3] 3R_20396200_SNP [dm6]	G	C	2.039e^-4	0.565	INTRON Gfrl
2R	18014339	2R_18014339_SNP [dm3] 2R_22126834_SNP [dm6]	A	G	2.054e^-4	0.565	NON_SYNONYMOUS_CODING GM130 UPSTREAM NtR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26650415	3R_26650415_SNP [dm3] 3R_30824693_SNP [dm6]	G	A	2.068e^-4	0.565	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3R	26650421	3R_26650421_SNP [dm3] 3R_30824699_SNP [dm6]	G	A	2.068e^-4	0.565	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
3R	26650430	3R_26650430_SNP [dm3] 3R_30824708_SNP [dm6]	C	A	2.068e^-4	0.565	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
2L	18173253	2L_18173253_SNP [dm3] 2L_18173253_SNP [dm6]	A	G	2.071e^-4	0.565	INTRON CG42750
3R	27023851	3R_27023851_DEL [dm3] 3R_31198129_DEL [dm6]	GATG	G	2.080e^-4	0.565	INTRON CG1544	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	14526944	2L_14526944_SNP [dm3] 2L_14526944_SNP [dm6]	T	A	2.097e^-4	0.565	INTERGENIC
X	12045766	X_12045766_SNP [dm3] X_12151733_SNP [dm6]	C	T	2.098e^-4	0.565	INTRON Ten-a
2L	19913792	2L_19913792_INS [dm3] 2L_19913792_INS [dm6]	A	AACA	2.103e^-4	0.565	UPSTREAM Victoria INTRON sick
3L	1587200	3L_1587200_SNP [dm3] 3L_1587200_SNP [dm6]	T	A	2.109e^-4	0.565	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	18202441	2L_18202441_INS [dm3] 2L_18202441_INS [dm6]	A	ATAA	2.113e^-4	0.565	INTRON CG42750
X	11907522	X_11907522_SNP [dm3] X_12013489_SNP [dm6]	A	T	2.113e^-4	0.565	UPSTREAM regucalcin INTRON regucalcin
X	11907525	X_11907525_SNP [dm3] X_12013492_SNP [dm6]	A	G	2.113e^-4	0.565	UPSTREAM regucalcin INTRON regucalcin
X	11907526	X_11907526_SNP [dm3] X_12013493_SNP [dm6]	T	A	2.113e^-4	0.565	UPSTREAM regucalcin INTRON regucalcin
X	11907531	X_11907531_INS [dm3] X_12013498_INS [dm6]	A	AA	2.113e^-4	0.565	UPSTREAM regucalcin INTRON regucalcin
2L	18478863	2L_18478863_SNP [dm3] 2L_18478863_SNP [dm6]	G	C	2.119e^-4	0.565	INTRON CG10283
2L	1730361	2L_1730361_SNP [dm3] 2L_1730361_SNP [dm6]	C	T	2.120e^-4	0.565	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5081104	3R_5081104_SNP [dm3] 3R_9255382_SNP [dm6]	G	T	2.120e^-4	0.565	SYNONYMOUS_CODING CG16734 DOWNSTREAM CR16735	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20744466	3R_20744466_SNP [dm3] 3R_24918744_SNP [dm6]	C	A	2.145e^-4	0.565	SYNONYMOUS_CODING CG11168 UPSTREAM PIG-S & 1 other	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	13078049	3L_13078049_SNP [dm3] 3L_13084949_SNP [dm6]	A	G	2.146e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	24994500	3R_24994500_SNP [dm3] 3R_29168778_SNP [dm6]	G	A	2.172e^-4	0.565	INTRON CG11898
2L	5635696	2L_5635696_SNP [dm3] 2L_5635696_SNP [dm6]	G	A	2.181e^-4	0.565	SYNONYMOUS_CODING CG31646	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	14833057	3L_14833057_SNP [dm3] 3L_14839957_SNP [dm6]	T	C	2.183e^-4	0.565	INTRON CG17839
2L	3890607	2L_3890607_SNP [dm3] 2L_3890607_SNP [dm6]	T	C	2.186e^-4	0.565	UPSTREAM capu INTRON capu
X	4289569	X_4289569_SNP [dm3] X_4395536_SNP [dm6]	C	T	2.188e^-4	0.565	INTRON CR32773	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7153433	2R_7153433_SNP [dm3] 2R_11265928_SNP [dm6]	T	C	2.198e^-4	0.565	DOWNSTREAM Cpr47Ef INTRON Cpr47Ee	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	9433090	3L_9433090_DEL [dm3] 3L_9439990_DEL [dm6]	ACCACGACGCAGCGCCCACA...	A	2.199e^-4	0.565	DOWNSTREAM Nf-YA & 1 other INTRON Bet3	transposable element FlyBase
2L	14333405	2L_14333405_SNP [dm3] 2L_14333405_SNP [dm6]	C	T	2.201e^-4	0.565	UPSTREAM CG33090 INTRON ms_2_34Fe
3R	27687252	3R_27687252_SNP [dm3] 3R_31861530_SNP [dm6]	G	A	2.206e^-4	0.565	INTRON heph
2R	8528850	2R_8528850_SNP [dm3] 2R_12641345_SNP [dm6]	C	T	2.219e^-4	0.565	NON_SYNONYMOUS_CODING CG8785 DOWNSTREAM Iswi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12167621	2R_12167621_SNP [dm3] 2R_16280116_SNP [dm6]	A	G	2.226e^-4	0.565	UTR_5_PRIME CG15704 UPSTREAM CG15705
2R	12167623	2R_12167623_SNP [dm3] 2R_16280118_SNP [dm6]	A	G	2.226e^-4	0.565	START_GAINED CG15704 UTR_5_PRIME CG15704 UPSTREAM CG15705
2R	13749682	2R_13749682_SNP [dm3] 2R_17862177_SNP [dm6]	A	G	2.255e^-4	0.565	SYNONYMOUS_CODING thr DOWNSTREAM CG14490	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18476417	2R_18476417_DEL [dm3] 2R_22588912_DEL [dm6]	ACA	A	2.259e^-4	0.565	INTRON dnr1	TF binding site mE1_TFBS_inv
3L	14255728	3L_14255728_SNP [dm3] 3L_14262628_SNP [dm6]	A	T	2.264e^-4	0.565	INTERGENIC
2R	17369128	2R_17369128_SNP [dm3] 2R_21481623_SNP [dm6]	C	T	2.278e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	6518572	X_6518572_SNP [dm3] X_6624539_SNP [dm6]	G	C	2.284e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	25286581	3R_25286581_SNP [dm3] 3R_29460859_SNP [dm6]	T	A	2.294e^-4	0.565	INTRON Ptp99A	TF binding site BDTNP1_TFBS_twi
3L	16930855	3L_16930855_SNP [dm3] 3L_16937755_SNP [dm6]	A	G	2.297e^-4	0.565	DOWNSTREAM CG13022 INTERGENIC
2R	3520938	2R_3520938_SNP [dm3] 2R_7633433_SNP [dm6]	A	T	2.298e^-4	0.565	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131	TF binding site mE1_TFBS_chinmo
3L	6063000	3L_6063000_SNP [dm3] 3L_6069900_SNP [dm6]	C	T	2.303e^-4	0.565	SPLICE_SITE_REGION CG42269 INTRON CG42269
2L	9374372	2L_9374372_SNP [dm3] 2L_9374372_SNP [dm6]	C	A	2.306e^-4	0.565	DOWNSTREAM CR43865 INTRON Shawl
2L	9374375	2L_9374375_SNP [dm3] 2L_9374375_SNP [dm6]	G	A	2.306e^-4	0.565	DOWNSTREAM CR43865 INTRON Shawl
2R	4926472	2R_4926472_SNP [dm3] 2R_9038967_SNP [dm6]	C	A	2.307e^-4	0.565	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4926591	2R_4926591_SNP [dm3] 2R_9039086_SNP [dm6]	C	T	2.307e^-4	0.565	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4926750	2R_4926750_SNP [dm3] 2R_9039245_SNP [dm6]	A	G	2.307e^-4	0.565	DOWNSTREAM Ance-4 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20360782	3R_20360782_SNP [dm3] 3R_24535060_SNP [dm6]	T	C	2.339e^-4	0.565	SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_sens
3R	19071528	3R_19071528_SNP [dm3] 3R_23245806_SNP [dm6]	A	C	2.346e^-4	0.565	INTRON CG4467
2R	6316511	2R_6316511_SNP [dm3] 2R_10429006_SNP [dm6]	T	C	2.372e^-4	0.565	UPSTREAM RanBPM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	6316697	2R_6316697_SNP [dm3] 2R_10429192_SNP [dm6]	C	G	2.372e^-4	0.565	UPSTREAM RanBPM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	6905319	3R_6905319_SNP [dm3] 3R_11079597_SNP [dm6]	G	C	2.372e^-4	0.565	INTERGENIC
3R	6905346	3R_6905346_SNP [dm3] 3R_11079624_SNP [dm6]	C	T	2.372e^-4	0.565	INTERGENIC
2R	13754779	2R_13754779_INS [dm3] 2R_17867274_INS [dm6]	A	AGGAAAA	2.374e^-4	0.565	INTRON Mapmodulin
3R	13465437	3R_13465437_SNP [dm3] 3R_17639715_SNP [dm6]	G	T	2.404e^-4	0.565	DOWNSTREAM CR45222 INTRON CG43175
X	15374456	X_15374456_SNP [dm3] X_15480423_SNP [dm6]	C	T	2.420e^-4	0.565	NON_SYNONYMOUS_CODING CG6324	TF binding site mE1_TFBS_cad
3R	15838534	3R_15838534_SNP [dm3] 3R_20012812_SNP [dm6]	T	C	2.437e^-4	0.565	INTRON CG17190
3R	15838555	3R_15838555_SNP [dm3] 3R_20012833_SNP [dm6]	A	C	2.437e^-4	0.565	INTRON CG17190
3R	8719773	3R_8719773_SNP [dm3] 3R_12894051_SNP [dm6]	A	G	2.457e^-4	0.565	DOWNSTREAM d-cup EXON CR33929
3R	8720050	3R_8720050_SNP [dm3] 3R_12894328_SNP [dm6]	A	G	2.457e^-4	0.565	EXON CR33929
3R	20360921	3R_20360921_SNP [dm3] 3R_24535199_SNP [dm6]	C	A	2.473e^-4	0.565	NON_SYNONYMOUS_CODING ana1	TF binding site mE1_TFBS_sens
3R	16446774	3R_16446774_SNP [dm3] 3R_20621052_SNP [dm6]	T	A	2.478e^-4	0.565	UTR_3_PRIME CG5466 UPSTREAM H
X	19584597	X_19584597_SNP [dm3] X_19690564_SNP [dm6]	T	A	2.484e^-4	0.565	UTR_3_PRIME Mer DOWNSTREAM Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	15717700	3R_15717700_SNP [dm3] 3R_19891978_SNP [dm6]	T	A	2.497e^-4	0.565	INTRON CG4733
2R	13814443	2R_13814443_SNP [dm3] 2R_17926938_SNP [dm6]	G	A	2.503e^-4	0.565	DOWNSTREAM Elk INTERGENIC
2L	15487422	2L_15487422_SNP [dm3] 2L_15487422_SNP [dm6]	T	G	2.526e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3296445	2L_3296445_SNP [dm3] 2L_3296445_SNP [dm6]	T	A	2.531e^-4	0.565	SYNONYMOUS_CODING CG9663
X	6518593	X_6518593_SNP [dm3] X_6624560_SNP [dm6]	T	C	2.535e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18650229	3L_18650229_SNP [dm3] 3L_18657129_SNP [dm6]	T	C	2.547e^-4	0.565	INTRON MYPT-75D
2R	10796267	2R_10796267_SNP [dm3] 2R_14908762_SNP [dm6]	T	A	2.555e^-4	0.565	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	18504550	2L_18504550_SNP [dm3] 2L_18504550_SNP [dm6]	C	A	2.556e^-4	0.565	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	26277299	3R_26277299_SNP [dm3] 3R_30451577_SNP [dm6]	T	C	2.573e^-4	0.565	INTRON aralar1
3R	27020852	3R_27020852_SNP [dm3] 3R_31195130_SNP [dm6]	A	C	2.573e^-4	0.565	NON_SYNONYMOUS_CODING mesh DOWNSTREAM bnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	19897126	3R_19897126_SNP [dm3] 3R_24071404_SNP [dm6]	T	A	2.614e^-4	0.565	INTRON 4EHP	TF binding site mE1_TFBS_cad
2L	3967740	2L_3967740_SNP [dm3] 2L_3967740_SNP [dm6]	G	C	2.618e^-4	0.565	INTRON fred	TF binding site mE1_TFBS_bab1
2R	16938503	2R_16938503_SNP [dm3] 2R_21050998_SNP [dm6]	A	G	2.632e^-4	0.565	SYNONYMOUS_CODING shg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17945374	2R_17945374_SNP [dm3] 2R_22057869_SNP [dm6]	C	T	2.642e^-4	0.565	UPSTREAM CG13500 INTERGENIC	TF binding site mE1_TFBS_cad
3R	18691970	3R_18691970_SNP [dm3] 3R_22866248_SNP [dm6]	C	T	2.656e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3477238	X_3477238_SNP [dm3] X_3583205_SNP [dm6]	T	C	2.666e^-4	0.565	INTRON AstA-R1
2L	10070105	2L_10070105_SNP [dm3] 2L_10070105_SNP [dm6]	A	C	2.681e^-4	0.565	INTRON CG44153
2L	18162389	2L_18162389_SNP [dm3] 2L_18162389_SNP [dm6]	T	G	2.682e^-4	0.565	INTRON CG42750
2R	8547072	2R_8547072_SNP [dm3] 2R_12659567_SNP [dm6]	A	G	2.694e^-4	0.565	UTR_3_PRIME nemy DOWNSTREAM nemy & 1 other
X	12436971	X_12436971_INS [dm3] X_12542938_INS [dm6]	C	CCGGAGTC	2.725e^-4	0.565	INTRON CG43921
3R	23372613	3R_23372613_SNP [dm3] 3R_27546891_SNP [dm6]	T	C	2.725e^-4	0.565	SYNONYMOUS_CODING Gr98d DOWNSTREAM Klp98A
3R	15717890	3R_15717890_SNP [dm3] 3R_19892168_SNP [dm6]	G	A	2.747e^-4	0.565	INTRON CG4733
3R	9797435	3R_9797435_SNP [dm3] 3R_13971713_SNP [dm6]	A	C	2.755e^-4	0.565	START_GAINED rdx UTR_5_PRIME rdx UPSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	2284142	3L_2284142_SNP [dm3] 3L_2284142_SNP [dm6]	C	G	2.759e^-4	0.565	INTRON MsR2
3R	25052737	3R_25052737_SNP [dm3] 3R_29227015_SNP [dm6]	T	C	2.760e^-4	0.565	DOWNSTREAM Brd8 INTRON CG14507	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4524223	X_4524223_SNP [dm3] X_4630190_SNP [dm6]	T	C	2.767e^-4	0.565	NON_SYNONYMOUS_CODING CG12184 DOWNSTREAM CG12179
3R	24994503	3R_24994503_DEL [dm3] 3R_29168781_DEL [dm6]	ATATG	A	2.783e^-4	0.565	INTRON CG11898
3R	15838582	3R_15838582_SNP [dm3] 3R_20012860_SNP [dm6]	A	T	2.786e^-4	0.565	INTRON CG17190
3L	9433149	3L_9433149_SNP [dm3] 3L_9440049_SNP [dm6]	T	G	2.808e^-4	0.565	DOWNSTREAM Nf-YA & 1 other INTRON Bet3	transposable element FlyBase
3R	18624735	3R_18624735_SNP [dm3] 3R_22799013_SNP [dm6]	C	T	2.819e^-4	0.565	INTERGENIC
3L	9702468	3L_9702468_SNP [dm3] 3L_9709368_SNP [dm6]	A	T	2.823e^-4	0.565	UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3R	17804964	3R_17804964_SNP [dm3] 3R_21979242_SNP [dm6]	T	G	2.842e^-4	0.565	INTRON Eip93F
X	6518605	X_6518605_SNP [dm3] X_6624572_SNP [dm6]	G	A	2.850e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7291884	2R_7291884_SNP [dm3] 2R_11404379_SNP [dm6]	T	C	2.857e^-4	0.565	UPSTREAM tRNA:CR45106 DOWNSTREAM tRNA:CR45107 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8533314	2R_8533314_SNP [dm3] 2R_12645809_SNP [dm6]	T	C	2.858e^-4	0.565	UPSTREAM CG8785 INTRON CG8785	TF binding site mE1_TFBS_cad
2L	18479659	2L_18479659_SNP [dm3] 2L_18479659_SNP [dm6]	A	G	2.874e^-4	0.565	INTRON CG10283	TF binding site BDTNP1_TFBS_twi
2L	18480153	2L_18480153_SNP [dm3] 2L_18480153_SNP [dm6]	C	T	2.874e^-4	0.565	INTRON CG10283	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10177179	X_10177179_SNP [dm3] X_10283146_SNP [dm6]	T	A	2.890e^-4	0.565	INTRON alpha-Man-I
2L	13838056	2L_13838056_DEL [dm3] 2L_13838056_DEL [dm6]	TCTAACGAAAATAAAT...	T	2.894e^-4	0.565	INTRON CenG1A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3480111	X_3480111_SNP [dm3] X_3586078_SNP [dm6]	G	T	2.915e^-4	0.565	INTRON AstA-R1
2L	6142258	2L_6142258_SNP [dm3] 2L_6142258_SNP [dm6]	C	T	2.916e^-4	0.565	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	27163591	3R_27163591_SNP [dm3] 3R_31337869_SNP [dm6]	A	C	2.920e^-4	0.565	INTRON CG34347
3R	8719948	3R_8719948_SNP [dm3] 3R_12894226_SNP [dm6]	A	G	2.925e^-4	0.565	SPLICE_SITE_REGION CR33929 INTRON CR33929
2L	7033078	2L_7033078_DEL [dm3] 2L_7033078_DEL [dm6]	TT	T	2.940e^-4	0.565	UPSTREAM Rab30 INTRON CG11266	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	17433739	3L_17433739_SNP [dm3] 3L_17440639_SNP [dm6]	T	G	2.949e^-4	0.565	INTRON CG18265
3R	12897965	3R_12897965_SNP [dm3] 3R_17072243_SNP [dm6]	G	T	2.959e^-4	0.565	SYNONYMOUS_CODING Ns1 UPSTREAM mRpS11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7104135	3R_7104135_SNP [dm3] 3R_11278413_SNP [dm6]	A	T	2.972e^-4	0.565	INTRON CR31386
X	12216784	X_12216784_SNP [dm3] X_12322751_SNP [dm6]	A	G	2.984e^-4	0.565	INTRON Ten-a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12616080	3L_12616080_SNP [dm3] 3L_12622980_SNP [dm6]	A	G	2.986e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8693001	2R_8693001_SNP [dm3] 2R_12805496_SNP [dm6]	G	C	2.989e^-4	0.565	INTERGENIC
X	3215783	X_3215783_SNP [dm3] X_3321750_SNP [dm6]	A	T	2.996e^-4	0.565	INTRON CR44886 & 1 other
2L	18396700	2L_18396700_SNP [dm3] 2L_18396700_SNP [dm6]	T	C	3.006e^-4	0.565	INTERGENIC
3R	16259328	3R_16259328_SNP [dm3] 3R_20433606_SNP [dm6]	C	G	3.025e^-4	0.565	INTRON Gfrl
3R	21213146	3R_21213146_SNP [dm3] 3R_25387424_SNP [dm6]	C	T	3.040e^-4	0.565	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	14914144	3L_14914144_SNP [dm3] 3L_14921044_SNP [dm6]	C	A	3.050e^-4	0.565	UPSTREAM DCX-EMAP INTRON DCX-EMAP	TF binding site mE1_TFBS_HSA mE1_TFBS_run
2R	10612435	2R_10612435_SNP [dm3] 2R_14724930_SNP [dm6]	T	A	3.070e^-4	0.565	INTERGENIC
2R	4925765	2R_4925765_SNP [dm3] 2R_9038260_SNP [dm6]	G	T	3.088e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9432989	3L_9432989_SNP [dm3] 3L_9439889_SNP [dm6]	A	G	3.094e^-4	0.565	DOWNSTREAM Nf-YA & 1 other INTRON Bet3	transposable element FlyBase
2L	15270070	2L_15270070_SNP [dm3] 2L_15270070_SNP [dm6]	A	G	3.097e^-4	0.565	UTR_5_PRIME Cul3 INTRON Cul3
2L	1312656	2L_1312656_SNP [dm3] 2L_1312656_SNP [dm6]	G	A	3.123e^-4	0.565	INTERGENIC
3R	24880481	3R_24880481_SNP [dm3] 3R_29054759_SNP [dm6]	A	C	3.134e^-4	0.565	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24880484	3R_24880484_SNP [dm3] 3R_29054762_SNP [dm6]	G	T	3.134e^-4	0.565	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24880485	3R_24880485_SNP [dm3] 3R_29054763_SNP [dm6]	C	T	3.134e^-4	0.565	DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	24880490	3R_24880490_INS [dm3] 3R_29054768_INS [dm6]	T	TGTCCAACT	3.134e^-4	0.565	SPLICE_SITE_REGION CG11843 DOWNSTREAM CG11842 INTRON CG11843	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	497088	3L_497088_SNP [dm3] 3L_497088_SNP [dm6]	A	G	3.144e^-4	0.565	INTRON klar
X	3480051	X_3480051_SNP [dm3] X_3586018_SNP [dm6]	C	T	3.149e^-4	0.565	INTRON AstA-R1
2L	808850	2L_808850_SNP [dm3] 2L_808850_SNP [dm6]	G	A	3.174e^-4	0.565	INTERGENIC
2L	15516737	2L_15516737_SNP [dm3] 2L_15516737_SNP [dm6]	T	C	3.185e^-4	0.565	UPSTREAM CR44864 INTERGENIC
3L	1006638	3L_1006638_SNP [dm3] 3L_1006638_SNP [dm6]	C	T	3.188e^-4	0.565	INTRON trio
2R	18005338	2R_18005338_SNP [dm3] 2R_22117833_SNP [dm6]	G	C	3.194e^-4	0.565	INTRON Vrp1
3L	3914844	3L_3914844_SNP [dm3] 3L_3914844_SNP [dm6]	T	A	3.194e^-4	0.565	INTRON Eip63F-1
2R	14828698	2R_14828698_SNP [dm3] 2R_18941193_SNP [dm6]	T	A	3.197e^-4	0.565	INTRON sano
3R	16996498	3R_16996498_SNP [dm3] 3R_21170776_SNP [dm6]	C	T	3.206e^-4	0.565	INTRON SNF4Agamma
2R	2484987	2R_2484987_SNP [dm3] 2R_6597482_SNP [dm6]	A	C	3.208e^-4	0.565	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4012313	3L_4012313_SNP [dm3] 3L_4012313_SNP [dm6]	T	G	3.214e^-4	0.565	INTERGENIC
3L	3335516	3L_3335516_SNP [dm3] 3L_3335516_SNP [dm6]	A	G	3.224e^-4	0.565	UPSTREAM CG14969 DOWNSTREAM Drsl1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	16532594	3L_16532594_SNP [dm3] 3L_16539494_SNP [dm6]	G	A	3.229e^-4	0.565	INTRON CG43373
3L	6578805	3L_6578805_DEL [dm3] 3L_6585705_DEL [dm6]	CCTC	C	3.233e^-4	0.565	INTRON CG18769 & 1 other
3L	6578873	3L_6578873_SNP [dm3] 3L_6585773_SNP [dm6]	A	G	3.233e^-4	0.565	INTRON CG18769 & 1 other
3R	24197153	3R_24197153_SNP [dm3] 3R_28371431_SNP [dm6]	A	C	3.236e^-4	0.565	INTERGENIC
X	3457104	X_3457104_SNP [dm3] X_3563071_SNP [dm6]	T	C	3.241e^-4	0.565	INTRON CG32791 & 1 other
3R	21389375	3R_21389375_SNP [dm3] 3R_25563653_SNP [dm6]	C	A	3.255e^-4	0.565	INTRON msi
2L	14066582	2L_14066582_SNP [dm3] 2L_14066582_SNP [dm6]	G	A	3.256e^-4	0.565	INTRON nAChRalpha5
3R	22800556	3R_22800556_SNP [dm3] 3R_26974834_SNP [dm6]	T	A	3.261e^-4	0.565	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_sens
3L	8873565	3L_8873565_SNP [dm3] 3L_8880465_SNP [dm6]	C	T	3.263e^-4	0.565	INTRON dally
2L	2691911	2L_2691911_SNP [dm3] 2L_2691911_SNP [dm6]	T	A	3.266e^-4	0.565	INTRON CG31690
3R	27147030	3R_27147030_SNP [dm3] 3R_31321308_SNP [dm6]	C	T	3.273e^-4	0.565	INTRON CG34347
3R	27147035	3R_27147035_SNP [dm3] 3R_31321313_SNP [dm6]	T	C	3.273e^-4	0.565	INTRON CG34347
3L	9470015	3L_9470015_SNP [dm3] 3L_9476915_SNP [dm6]	C	T	3.299e^-4	0.565	START_GAINED Uch-L5 UTR_5_PRIME Uch-L5 UPSTREAM Jarid2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
3L	9678702	3L_9678702_SNP [dm3] 3L_9685602_SNP [dm6]	T	G	3.304e^-4	0.565	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	26663834	3R_26663834_INS [dm3] 3R_30838112_INS [dm6]	C	CAAATGATATTTTAATTAC...	3.306e^-4	0.565	INTRON CG15544
3R	25782458	3R_25782458_SNP [dm3] 3R_29956736_SNP [dm6]	C	A	3.308e^-4	0.565	INTRON TkR99D
2R	8923497	2R_8923497_SNP [dm3] 2R_13035992_SNP [dm6]	C	G	3.318e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15454325	3L_15454325_SNP [dm3] 3L_15461225_SNP [dm6]	A	C	3.323e^-4	0.565	INTERGENIC
3L	9700420	3L_9700420_SNP [dm3] 3L_9707320_SNP [dm6]	A	G	3.332e^-4	0.565	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	5628628	3L_5628628_SNP [dm3] 3L_5635528_SNP [dm6]	T	C	3.339e^-4	0.565	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	3017673	3L_3017673_SNP [dm3] 3L_3017673_SNP [dm6]	T	A	3.342e^-4	0.565	UPSTREAM CG32487 INTERGENIC
3L	11350290	3L_11350290_SNP [dm3] 3L_11357190_SNP [dm6]	T	G	3.352e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17113514	X_17113514_SNP [dm3] X_17219481_SNP [dm6]	A	G	3.366e^-4	0.565	UTR_3_PRIME CG12998
X	8722244	X_8722244_SNP [dm3] X_8828211_SNP [dm6]	T	A	3.369e^-4	0.565	INTERGENIC
2L	10155039	2L_10155039_SNP [dm3] 2L_10155039_SNP [dm6]	T	C	3.382e^-4	0.565	SYNONYMOUS_CODING CG4839 INTRON CG44153
X	20228240	X_20228240_SNP [dm3] X_20357213_SNP [dm6]	A	G	3.385e^-4	0.565	INTERGENIC
2L	18202740	2L_18202740_SNP [dm3] 2L_18202740_SNP [dm6]	C	A	3.403e^-4	0.565	INTRON CG42750	TF binding site mE1_TFBS_cad
2L	16591022	2L_16591022_SNP [dm3] 2L_16591022_SNP [dm6]	G	T	3.409e^-4	0.565	INTRON CG42389	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13279562	2L_13279562_SNP [dm3] 2L_13279562_SNP [dm6]	C	A	3.433e^-4	0.565	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14672408	3L_14672408_SNP [dm3] 3L_14679308_SNP [dm6]	A	T	3.433e^-4	0.565	INTRON ome
3L	2129976	3L_2129976_SNP [dm3] 3L_2129976_SNP [dm6]	T	G	3.441e^-4	0.565	INTRON zormin
X	17121763	X_17121763_SNP [dm3] X_17227730_SNP [dm6]	A	T	3.445e^-4	0.565	UPSTREAM CG10598 INTERGENIC
X	17958224	X_17958224_SNP [dm3] X_18064191_SNP [dm6]	T	A	3.452e^-4	0.565	UPSTREAM Sh & 1 other INTERGENIC
3R	16860208	3R_16860208_INS [dm3] 3R_21034486_INS [dm6]	C	TTCT	3.472e^-4	0.565	INTRON Dhc93AB	TF binding site mE1_TFBS_cad
2L	18194682	2L_18194682_SNP [dm3] 2L_18194682_SNP [dm6]	C	T	3.473e^-4	0.565	INTRON CG42750	TF binding site BDTNP1_TFBS_hb
X	22164468	X_22164468_DEL [dm3] X_22762632_DEL [dm6]	TT	T	3.477e^-4	0.565	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22765509	3R_22765509_SNP [dm3] 3R_26939787_SNP [dm6]	T	C	3.481e^-4	0.565	INTRON sda
3L	18393610	3L_18393610_INS [dm3] 3L_18400510_INS [dm6]	C	CT	3.506e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	9799323	3L_9799323_SNP [dm3] 3L_9806223_SNP [dm6]	A	G	3.510e^-4	0.565	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13759568	2R_13759568_SNP [dm3] 2R_17872063_SNP [dm6]	T	A	3.519e^-4	0.565	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
X	3197813	X_3197813_SNP [dm3] X_3303780_SNP [dm6]	A	G	3.542e^-4	0.565	INTRON dnc
3L	426281	3L_426281_SNP [dm3] 3L_426281_SNP [dm6]	T	G	3.546e^-4	0.565	INTERGENIC
3R	12896236	3R_12896236_SNP [dm3] 3R_17070514_SNP [dm6]	A	T	3.559e^-4	0.565	DOWNSTREAM Ns1 & 1 other INTERGENIC
3R	12896300	3R_12896300_SNP [dm3] 3R_17070578_SNP [dm6]	A	T	3.559e^-4	0.565	UTR_3_PRIME Ns1 DOWNSTREAM Dad
2R	14839852	2R_14839852_INS [dm3] 2R_18952347_INS [dm6]	T	TT	3.561e^-4	0.565	INTRON sano
3L	16532582	3L_16532582_SNP [dm3] 3L_16539482_SNP [dm6]	T	C	3.567e^-4	0.565	INTRON CG43373
X	6110429	X_6110429_SNP [dm3] X_6216396_SNP [dm6]	C	T	3.569e^-4	0.565	DOWNSTREAM Btd INTERGENIC
X	16533876	X_16533876_SNP [dm3] X_16639843_SNP [dm6]	C	T	3.594e^-4	0.565	UTR_3_PRIME SmG DOWNSTREAM SmG & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	8923480	2R_8923480_SNP [dm3] 2R_13035975_SNP [dm6]	C	T	3.599e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8923490	2R_8923490_INS [dm3] 2R_13035985_INS [dm6]	A	AAG	3.599e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8923493	2R_8923493_SNP [dm3] 2R_13035988_SNP [dm6]	A	T	3.599e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8923503	2R_8923503_SNP [dm3] 2R_13035998_SNP [dm6]	G	A	3.599e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	8923504	2R_8923504_SNP [dm3] 2R_13035999_SNP [dm6]	T	A	3.599e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12553021	3L_12553021_SNP [dm3] 3L_12559921_SNP [dm6]	A	T	3.601e^-4	0.565	INTRON sowah
3R	20485475	3R_20485475_SNP [dm3] 3R_24659753_SNP [dm6]	C	T	3.602e^-4	0.565	SYNONYMOUS_CODING CG31126 DOWNSTREAM Ppox & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20978115	3R_20978115_SNP [dm3] 3R_25152393_SNP [dm6]	C	T	3.648e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	15022530	3L_15022530_SNP [dm3] 3L_15029430_SNP [dm6]	G	A	3.653e^-4	0.565	INTRON Sytbeta
3R	16417388	3R_16417388_SNP [dm3] 3R_20591666_SNP [dm6]	G	A	3.671e^-4	0.565	DOWNSTREAM Srp72 INTRON CG4159	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	24603594	3R_24603594_SNP [dm3] 3R_28777872_SNP [dm6]	C	T	3.676e^-4	0.565	DOWNSTREAM CR44952 INTERGENIC
3L	12773058	3L_12773058_SNP [dm3] 3L_12779958_SNP [dm6]	T	A	3.688e^-4	0.565	NON_SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
3L	14997407	3L_14997407_SNP [dm3] 3L_15004307_SNP [dm6]	T	C	3.720e^-4	0.565	INTRON Reck	TF binding site mE1_TFBS_cad
X	16533783	X_16533783_SNP [dm3] X_16639750_SNP [dm6]	T	C	3.726e^-4	0.565	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	16533822	X_16533822_SNP [dm3] X_16639789_SNP [dm6]	C	T	3.726e^-4	0.565	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
X	22164476	X_22164476_SNP [dm3] X_22762640_SNP [dm6]	G	T	3.726e^-4	0.565	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22164545	X_22164545_SNP [dm3] X_22762709_SNP [dm6]	T	A	3.726e^-4	0.565	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22164722	X_22164722_SNP [dm3] X_22762886_SNP [dm6]	A	G	3.726e^-4	0.565	INTRON CR44997	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22164902	X_22164902_SNP [dm3] X_22763066_SNP [dm6]	T	C	3.726e^-4	0.565	INTRON CR44997
X	3341351	X_3341351_SNP [dm3] X_3447318_SNP [dm6]	A	G	3.734e^-4	0.565	INTRON CR44999 & 1 other
2L	5636509	2L_5636509_SNP [dm3] 2L_5636509_SNP [dm6]	G	A	3.735e^-4	0.565	INTRON CG31646
3R	18624743	3R_18624743_DEL [dm3] 3R_22799021_DEL [dm6]	AAACTCA	A	3.736e^-4	0.565	INTERGENIC
2R	18013906	2R_18013906_SNP [dm3] 2R_22126401_SNP [dm6]	A	G	3.760e^-4	0.565	SYNONYMOUS_CODING GM130	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17781469	2R_17781469_DEL [dm3] 2R_21893964_DEL [dm6]	TC	T	3.765e^-4	0.565	INTRON Fili
2L	10548860	2L_10548860_SNP [dm3] 2L_10548860_SNP [dm6]	G	T	3.782e^-4	0.565	INTRON Trim9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22741095	3R_22741095_SNP [dm3] 3R_26915373_SNP [dm6]	T	C	3.792e^-4	0.565	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6142260	2L_6142260_SNP [dm3] 2L_6142260_SNP [dm6]	G	A	3.811e^-4	0.565	SYNONYMOUS_CODING CG13991	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3914218	3L_3914218_SNP [dm3] 3L_3914218_SNP [dm6]	G	C	3.819e^-4	0.565	INTRON Eip63F-1
3R	16521573	3R_16521573_SNP [dm3] 3R_20695851_SNP [dm6]	G	T	3.819e^-4	0.565	INTRON Oamb
2L	20839959	2L_20839959_SNP [dm3] 2L_20839959_SNP [dm6]	G	C	3.830e^-4	0.565	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	2991032	X_2991032_SNP [dm3] X_3096999_SNP [dm6]	T	C	3.830e^-4	0.565	INTRON kirre	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14530515	2L_14530515_DEL [dm3] 2L_14530515_DEL [dm6]	GG	G	3.834e^-4	0.565	DOWNSTREAM tRNA:G3:35Bd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8627051	3L_8627051_SNP [dm3] 3L_8633951_SNP [dm6]	C	T	3.846e^-4	0.565	UTR_5_PRIME Cdc6 INTRON Zasp66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16271529	3L_16271529_SNP [dm3] 3L_16278429_SNP [dm6]	A	C	3.848e^-4	0.565	DOWNSTREAM CG13050 & 1 other INTERGENIC
3L	16271530	3L_16271530_SNP [dm3] 3L_16278430_SNP [dm6]	T	A	3.848e^-4	0.565	DOWNSTREAM CG13050 & 1 other INTERGENIC
2R	10317193	2R_10317193_SNP [dm3] 2R_14429688_SNP [dm6]	T	G	3.848e^-4	0.565	INTRON phyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20356939	3R_20356939_SNP [dm3] 3R_24531217_SNP [dm6]	C	A	3.851e^-4	0.565	NON_SYNONYMOUS_CODING ana1 UPSTREAM CG13623	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7592040	X_7592040_SNP [dm3] X_7698007_SNP [dm6]	T	C	3.892e^-4	0.565	INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	20284390	3R_20284390_SNP [dm3] 3R_24458668_SNP [dm6]	A	C	3.921e^-4	0.565	INTERGENIC
3L	16532710	3L_16532710_SNP [dm3] 3L_16539610_SNP [dm6]	A	G	3.930e^-4	0.565	INTRON CG43373
3R	25483282	3R_25483282_SNP [dm3] 3R_29657560_SNP [dm6]	A	G	3.932e^-4	0.565	INTRON Dop1R2
3L	2186729	3L_2186729_SNP [dm3] 3L_2186729_SNP [dm6]	C	T	3.938e^-4	0.565	SYNONYMOUS_CODING CG13810	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17433660	3L_17433660_SNP [dm3] 3L_17440560_SNP [dm6]	A	T	3.945e^-4	0.565	INTRON CG18265
3L	18357963	3L_18357963_SNP [dm3] 3L_18364863_SNP [dm6]	G	A	3.952e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	21100059	X_21100059_SNP [dm3] X_21229032_SNP [dm6]	G	T	3.960e^-4	0.565	INTRON CG32521
3R	8598555	3R_8598555_SNP [dm3] 3R_12772833_SNP [dm6]	G	C	3.965e^-4	0.565	INTRON beat-Vc
3L	14377056	3L_14377056_SNP [dm3] 3L_14383956_SNP [dm6]	C	G	3.972e^-4	0.565	DOWNSTREAM CG43120 INTERGENIC
3L	2952494	3L_2952494_SNP [dm3] 3L_2952494_SNP [dm6]	C	A	3.972e^-4	0.565	UPSTREAM CG32846 INTRON Shab
2L	10630809	2L_10630809_SNP [dm3] 2L_10630809_SNP [dm6]	A	T	3.972e^-4	0.565	SPLICE_SITE_REGION CG7329 INTRON CG7329	TF binding site mE1_TFBS_sens
2L	15264832	2L_15264832_SNP [dm3] 2L_15264832_SNP [dm6]	A	T	3.972e^-4	0.565	UPSTREAM yuri DOWNSTREAM Cul3 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3852969	3L_3852969_SNP [dm3] 3L_3852969_SNP [dm6]	A	G	3.972e^-4	0.565	INTRON Awh
3L	7409807	3L_7409807_SNP [dm3] 3L_7416707_SNP [dm6]	A	G	3.972e^-4	0.565	INTERGENIC
3R	19540590	3R_19540590_SNP [dm3] 3R_23714868_SNP [dm6]	A	T	3.973e^-4	0.565	INTRON nau
2R	8540509	2R_8540509_SNP [dm3] 2R_12653004_SNP [dm6]	T	A	3.981e^-4	0.565	UTR_5_PRIME ZnT49B UPSTREAM CG8778
2R	8540522	2R_8540522_SNP [dm3] 2R_12653017_SNP [dm6]	C	T	3.981e^-4	0.565	UTR_5_PRIME ZnT49B UPSTREAM CG8778
3R	15846932	3R_15846932_SNP [dm3] 3R_20021210_SNP [dm6]	T	A	3.989e^-4	0.565	START_GAINED CG4433 UTR_5_PRIME CG4433 UPSTREAM psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	27142233	3R_27142233_SNP [dm3] 3R_31316511_SNP [dm6]	G	C	3.989e^-4	0.565	INTRON CG34347
3L	3859929	3L_3859929_SNP [dm3] 3L_3859929_SNP [dm6]	C	T	3.998e^-4	0.565	INTRON Awh	TF binding site mE1_TFBS_cad
2L	14320512	2L_14320512_SNP [dm3] 2L_14320512_SNP [dm6]	A	G	3.999e^-4	0.565	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna
2L	14321231	2L_14321231_SNP [dm3] 2L_14321231_SNP [dm6]	C	G	3.999e^-4	0.565	NON_SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
3L	12210037	3L_12210037_SNP [dm3] 3L_12216937_SNP [dm6]	A	T	4.002e^-4	0.565	INTRON app
3R	25413088	3R_25413088_SNP [dm3] 3R_29587366_SNP [dm6]	A	T	4.007e^-4	0.565	NON_SYNONYMOUS_CODING CG7567	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	9678660	3L_9678660_SNP [dm3] 3L_9685560_SNP [dm6]	A	G	4.008e^-4	0.565	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2284132	3L_2284132_SNP [dm3] 3L_2284132_SNP [dm6]	C	A	4.010e^-4	0.565	INTRON MsR2
2R	6826918	2R_6826918_INS [dm3] 2R_10939413_INS [dm6]	G	CTCTTTAATT	4.024e^-4	0.565	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
X	6518568	X_6518568_SNP [dm3] X_6624535_SNP [dm6]	A	C	4.037e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	10630841	2L_10630841_SNP [dm3] 2L_10630841_SNP [dm6]	A	G	4.039e^-4	0.565	INTRON CG7329	TF binding site mE1_TFBS_sens
3R	22775761	3R_22775761_SNP [dm3] 3R_26950039_SNP [dm6]	T	C	4.039e^-4	0.565	UTR_3_PRIME CG6330 DOWNSTREAM CG6330 & 1 other
2L	14380021	2L_14380021_SNP [dm3] 2L_14380021_SNP [dm6]	C	A	4.039e^-4	0.565	SYNONYMOUS_CODING ppk	TF binding site mE1_TFBS_sens
3R	26633597	3R_26633597_SNP [dm3] 3R_30807875_SNP [dm6]	T	G	4.040e^-4	0.565	SYNONYMOUS_CODING dj-1beta UPSTREAM cindr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	673131	X_673131_INS [dm3] X_779098_INS [dm6]	T	TT	4.043e^-4	0.565	INTRON fz3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	6440100	2R_6440100_SNP [dm3] 2R_10552595_SNP [dm6]	C	T	4.048e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	9432907	3L_9432907_SNP [dm3] 3L_9439807_SNP [dm6]	A	G	4.062e^-4	0.565	DOWNSTREAM Nf-YA & 1 other INTRON Bet3
3R	25123765	3R_25123765_SNP [dm3] 3R_29298043_SNP [dm6]	C	A	4.076e^-4	0.565	UPSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	15717698	3R_15717698_SNP [dm3] 3R_19891976_SNP [dm6]	T	G	4.078e^-4	0.565	INTRON CG4733
3R	27021304	3R_27021304_SNP [dm3] 3R_31195582_SNP [dm6]	G	A	4.082e^-4	0.565	UPSTREAM mesh INTRON mesh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	17369099	2R_17369099_SNP [dm3] 2R_21481594_SNP [dm6]	G	T	4.101e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7275527	2R_7275527_SNP [dm3] 2R_11388022_SNP [dm6]	C	G	4.114e^-4	0.565	SYNONYMOUS_CODING CG30022 INTRON sprt
3R	26450595	3R_26450595_DEL [dm3] 3R_30624873_DEL [dm6]	CA	C	4.122e^-4	0.565	EXON CR44136	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	26650870	3R_26650870_SNP [dm3] 3R_30825148_SNP [dm6]	C	A	4.128e^-4	0.565	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14914852	2L_14914852_SNP [dm3] 2L_14914852_SNP [dm6]	T	C	4.145e^-4	0.565	INTRON CG42313
2R	14083373	2R_14083373_SNP [dm3] 2R_18195868_SNP [dm6]	T	C	4.149e^-4	0.565	INTERGENIC
2L	3069900	2L_3069900_SNP [dm3] 2L_3069900_SNP [dm6]	T	C	4.153e^-4	0.565	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15716060	3R_15716060_SNP [dm3] 3R_19890338_SNP [dm6]	A	T	4.185e^-4	0.565	UPSTREAM CG4733 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	9799207	3L_9799207_SNP [dm3] 3L_9806107_SNP [dm6]	G	A	4.189e^-4	0.565	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	27174809	3R_27174809_SNP [dm3] 3R_31349087_SNP [dm6]	G	T	4.189e^-4	0.565	INTRON CG34347	regulatory region REDfly_CRMs
3R	10289350	3R_10289350_SNP [dm3] 3R_14463628_SNP [dm6]	T	C	4.214e^-4	0.565	INTRON cv-c
2L	6127316	2L_6127316_SNP [dm3] 2L_6127316_SNP [dm6]	C	G	4.219e^-4	0.565	NON_SYNONYMOUS_CODING WDR79 DOWNSTREAM CG42730 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	12372525	3L_12372525_SNP [dm3] 3L_12379425_SNP [dm6]	C	T	4.220e^-4	0.565	UTR_5_PRIME Ncc69	TF binding site BDTNP1_TFBS_twi
3R	26333831	3R_26333831_SNP [dm3] 3R_30508109_SNP [dm6]	G	T	4.254e^-4	0.565	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
3R	26333836	3R_26333836_SNP [dm3] 3R_30508114_SNP [dm6]	G	C	4.254e^-4	0.565	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
3R	26333887	3R_26333887_SNP [dm3] 3R_30508165_SNP [dm6]	C	G	4.254e^-4	0.565	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
3R	26334045	3R_26334045_SNP [dm3] 3R_30508323_SNP [dm6]	G	A	4.254e^-4	0.565	SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
X	16533639	X_16533639_SNP [dm3] X_16639606_SNP [dm6]	A	G	4.256e^-4	0.565	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3915101	3L_3915101_SNP [dm3] 3L_3915101_SNP [dm6]	A	G	4.266e^-4	0.565	INTRON Eip63F-1
3R	15837085	3R_15837085_SNP [dm3] 3R_20011363_SNP [dm6]	T	C	4.266e^-4	0.565	SYNONYMOUS_CODING MED25 DOWNSTREAM CG17190	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3473795	X_3473795_SNP [dm3] X_3579762_SNP [dm6]	G	A	4.276e^-4	0.565	INTRON AstA-R1
2R	18610771	2R_18610771_INS [dm3] 2R_22723266_INS [dm6]	A	AA	4.297e^-4	0.565	INTRON jbug	TF binding site mE1_TFBS_cad
3R	21267290	3R_21267290_SNP [dm3] 3R_25441568_SNP [dm6]	G	A	4.311e^-4	0.565	INTRON Fur1	TF binding site mE1_TFBS_Kr
3R	10209290	3R_10209290_SNP [dm3] 3R_14383568_SNP [dm6]	T	C	4.320e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad
3R	9583759	3R_9583759_SNP [dm3] 3R_13758037_SNP [dm6]	C	A	4.321e^-4	0.565	INTRON CG34383
3R	9583823	3R_9583823_INS [dm3] 3R_13758101_INS [dm6]	A	AAA	4.321e^-4	0.565	INTRON CG34383
X	21120801	X_21120801_DEL [dm3] X_21249774_DEL [dm6]	AGGA	A	4.329e^-4	0.565	DOWNSTREAM CG1722 INTRON CG32521
X	21120819	X_21120819_INS [dm3] X_21249792_INS [dm6]	C	CCT	4.329e^-4	0.565	DOWNSTREAM CG1722 INTRON CG32521
X	20677550	X_20677550_SNP [dm3] X_20806523_SNP [dm6]	C	T	4.330e^-4	0.565	INTRON shakB
3L	2733400	3L_2733400_SNP [dm3] 3L_2733400_SNP [dm6]	A	C	4.351e^-4	0.565	INTRON Mrtf
3R	12536058	3R_12536058_SNP [dm3] 3R_16710336_SNP [dm6]	C	T	4.351e^-4	0.565	INTRON Ubx
2L	18216713	2L_18216713_SNP [dm3] 2L_18216713_SNP [dm6]	G	C	4.370e^-4	0.565	INTRON CG42750
3L	12669522	3L_12669522_SNP [dm3] 3L_12676422_SNP [dm6]	A	T	4.373e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad
3R	20316635	3R_20316635_SNP [dm3] 3R_24490913_SNP [dm6]	A	G	4.382e^-4	0.565	SYNONYMOUS_CODING nAChRalpha2
X	15170049	X_15170049_SNP [dm3] X_15276016_SNP [dm6]	T	A	4.393e^-4	0.565	INTERGENIC
2R	6265539	2R_6265539_SNP [dm3] 2R_10378034_SNP [dm6]	A	G	4.394e^-4	0.565	SYNONYMOUS_CODING Ir47a UPSTREAM Ir47b INTRON CG42732
3R	17008900	3R_17008900_SNP [dm3] 3R_21183178_SNP [dm6]	T	C	4.399e^-4	0.565	INTRON SNF4Agamma
2L	9579179	2L_9579179_SNP [dm3] 2L_9579179_SNP [dm6]	C	G	4.400e^-4	0.565	NON_SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9579220	2L_9579220_SNP [dm3] 2L_9579220_SNP [dm6]	A	G	4.400e^-4	0.565	SYNONYMOUS_CODING CG31709 DOWNSTREAM gcm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6014540	2L_6014540_SNP [dm3] 2L_6014540_SNP [dm6]	T	G	4.408e^-4	0.565	INTRON H2.0
3L	12892536	3L_12892536_SNP [dm3] 3L_12899436_SNP [dm6]	C	T	4.437e^-4	0.565	INTERGENIC
3L	12892542	3L_12892542_SNP [dm3] 3L_12899442_SNP [dm6]	T	C	4.437e^-4	0.565	INTERGENIC
2R	14828796	2R_14828796_SNP [dm3] 2R_18941291_SNP [dm6]	T	A	4.438e^-4	0.565	INTRON sano
X	2326859	X_2326859_SNP [dm3] X_2432826_SNP [dm6]	A	T	4.446e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
2R	7430312	2R_7430312_SNP [dm3] 2R_11542807_SNP [dm6]	G	A	4.450e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	14504643	X_14504643_SNP [dm3] X_14610610_SNP [dm6]	G	T	4.459e^-4	0.565	INTRON NetA	TF binding site mE1_TFBS_cad
X	14505462	X_14505462_INS [dm3] X_14611429_INS [dm6]	C	CGAAACTATAATAAGACC...	4.459e^-4	0.565	INTRON NetA	TF binding site mE1_TFBS_inv
3L	4728830	3L_4728830_SNP [dm3] 3L_4728830_SNP [dm6]	T	A	4.462e^-4	0.565	INTRON RhoGEF64C
3R	7065522	3R_7065522_INS [dm3] 3R_11239800_INS [dm6]	T	TAT	4.484e^-4	0.565	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
3R	7065524	3R_7065524_MNP [dm3] 3R_11239802_MNP [dm6]	AATAT	CTGCA	4.484e^-4	0.565	DOWNSTREAM scpr-B INTRON CG31388	TF binding site BDTNP1_TFBS_twi
2L	9591403	2L_9591403_SNP [dm3] 2L_9591403_SNP [dm6]	T	C	4.494e^-4	0.565	SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9678705	3L_9678705_SNP [dm3] 3L_9685605_SNP [dm6]	G	A	4.495e^-4	0.565	SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18035787	2R_18035787_SNP [dm3] 2R_22148282_SNP [dm6]	C	T	4.498e^-4	0.565	INTRON a
2L	18504685	2L_18504685_SNP [dm3] 2L_18504685_SNP [dm6]	G	A	4.502e^-4	0.565	UPSTREAM kon INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25406369	3R_25406369_SNP [dm3] 3R_29580647_SNP [dm6]	C	T	4.520e^-4	0.565	INTERGENIC
3R	14679473	3R_14679473_SNP [dm3] 3R_18853751_SNP [dm6]	A	C	4.526e^-4	0.565	INTERGENIC
2R	11025449	2R_11025449_INS [dm3] 2R_15137944_INS [dm6]	T	TC	4.527e^-4	0.565	INTRON chn
3R	22593412	3R_22593412_DEL [dm3] 3R_26767690_DEL [dm6]	TT	T	4.529e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	4652387	X_4652387_SNP [dm3] X_4758354_SNP [dm6]	T	G	4.530e^-4	0.565	INTERGENIC
X	12045774	X_12045774_SNP [dm3] X_12151741_SNP [dm6]	A	C	4.536e^-4	0.565	INTRON Ten-a
2L	18400115	2L_18400115_DEL [dm3] 2L_18400115_DEL [dm6]	CTC	C	4.544e^-4	0.565	UPSTREAM CR44486 INTERGENIC
3L	2575387	3L_2575387_SNP [dm3] 3L_2575387_SNP [dm6]	G	A	4.552e^-4	0.565	INTRON msn
X	11164889	X_11164889_SNP [dm3] X_11270856_SNP [dm6]	T	C	4.557e^-4	0.565	INTRON CG44422
X	11164903	X_11164903_SNP [dm3] X_11270870_SNP [dm6]	T	C	4.557e^-4	0.565	INTRON CG44422
2R	7997309	2R_7997309_SNP [dm3] 2R_12109804_SNP [dm6]	G	A	4.560e^-4	0.565	INTRON jeb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8923601	2R_8923601_SNP [dm3] 2R_13036096_SNP [dm6]	A	C	4.595e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	18147956	2L_18147956_SNP [dm3] 2L_18147956_SNP [dm6]	G	A	4.597e^-4	0.565	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18149479	2L_18149479_SNP [dm3] 2L_18149479_SNP [dm6]	G	A	4.597e^-4	0.565	INTRON Socs36E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi BDTNP1_TFBS_z
2L	18162488	2L_18162488_DEL [dm3] 2L_18162488_DEL [dm6]	AA	A	4.597e^-4	0.565	INTRON CG42750
2L	18189526	2L_18189526_SNP [dm3] 2L_18189526_SNP [dm6]	G	A	4.597e^-4	0.565	INTRON CG42750
2L	18191268	2L_18191268_SNP [dm3] 2L_18191268_SNP [dm6]	T	C	4.597e^-4	0.565	INTRON CG42750
2L	18191358	2L_18191358_SNP [dm3] 2L_18191358_SNP [dm6]	G	A	4.597e^-4	0.565	INTRON CG42750
2L	18192698	2L_18192698_SNP [dm3] 2L_18192698_SNP [dm6]	A	G	4.597e^-4	0.565	INTRON CG42750
2L	18193595	2L_18193595_SNP [dm3] 2L_18193595_SNP [dm6]	G	A	4.597e^-4	0.565	INTRON CG42750
2L	18195494	2L_18195494_SNP [dm3] 2L_18195494_SNP [dm6]	C	A	4.597e^-4	0.565	INTRON CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18210334	2L_18210334_INS [dm3] 2L_18210334_INS [dm6]	T	TTGTATAT	4.597e^-4	0.565	INTRON CG42750
2L	18210336	2L_18210336_SNP [dm3] 2L_18210336_SNP [dm6]	A	T	4.597e^-4	0.565	INTRON CG42750
2L	18299622	2L_18299622_SNP [dm3] 2L_18299622_SNP [dm6]	T	A	4.597e^-4	0.565	INTERGENIC
2R	13343539	2R_13343539_SNP [dm3] 2R_17456034_SNP [dm6]	G	C	4.597e^-4	0.565	SYNONYMOUS_CODING robls54B UPSTREAM robl DOWNSTREAM CG10764	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	19951403	3R_19951403_SNP [dm3] 3R_24125681_SNP [dm6]	T	C	4.597e^-4	0.565	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	10177408	X_10177408_SNP [dm3] X_10283375_SNP [dm6]	A	T	4.597e^-4	0.565	INTRON alpha-Man-I
X	10177414	X_10177414_SNP [dm3] X_10283381_SNP [dm6]	A	G	4.597e^-4	0.565	INTRON alpha-Man-I
X	10177492	X_10177492_SNP [dm3] X_10283459_SNP [dm6]	A	G	4.597e^-4	0.565	INTRON alpha-Man-I
X	10177502	X_10177502_SNP [dm3] X_10283469_SNP [dm6]	A	G	4.597e^-4	0.565	INTRON alpha-Man-I
X	10177564	X_10177564_INS [dm3] X_10283531_INS [dm6]	T	TTTCAGAACAGA...	4.597e^-4	0.565	INTRON alpha-Man-I
X	10177580	X_10177580_SNP [dm3] X_10283547_SNP [dm6]	T	A	4.597e^-4	0.565	INTRON alpha-Man-I
3L	10676869	3L_10676869_INS [dm3] 3L_10683769_INS [dm6]	T	TT	4.601e^-4	0.565	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10676885	3L_10676885_SNP [dm3] 3L_10683785_SNP [dm6]	A	G	4.601e^-4	0.565	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22243902	3R_22243902_SNP [dm3] 3R_26418180_SNP [dm6]	A	T	4.635e^-4	0.565	INTERGENIC
2L	19899148	2L_19899148_SNP [dm3] 2L_19899148_SNP [dm6]	C	G	4.638e^-4	0.565	INTRON sick
2R	17975930	2R_17975930_INS [dm3] 2R_22088425_INS [dm6]	T	TATTAAACT	4.642e^-4	0.565	DOWNSTREAM CG43393 INTRON CG13502
3R	6868652	3R_6868652_SNP [dm3] 3R_11042930_SNP [dm6]	C	A	4.647e^-4	0.565	INTRON CG34114
2R	3364668	2R_3364668_SNP [dm3] 2R_7477163_SNP [dm6]	C	T	4.684e^-4	0.565	UPSTREAM Aldh-III INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17592951	2R_17592951_DEL [dm3] 2R_21705446_DEL [dm6]	ATTATTATTA	A	4.688e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	17592970	2R_17592970_SNP [dm3] 2R_21705465_SNP [dm6]	G	A	4.688e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	14007937	2R_14007937_SNP [dm3] 2R_18120432_SNP [dm6]	T	C	4.693e^-4	0.565	INTRON stau	TF binding site mE1_TFBS_cad
2L	2349675	2L_2349675_SNP [dm3] 2L_2349675_SNP [dm6]	A	G	4.694e^-4	0.565	INTRON CG9967 & 1 other
3L	18357955	3L_18357955_SNP [dm3] 3L_18364855_SNP [dm6]	T	C	4.700e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	20374440	3R_20374440_SNP [dm3] 3R_24548718_SNP [dm6]	G	A	4.708e^-4	0.565	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	18308694	2L_18308694_SNP [dm3] 2L_18308694_SNP [dm6]	T	A	4.713e^-4	0.565	UPSTREAM CR44694 & 1 other DOWNSTREAM CG43354 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16996791	2R_16996791_SNP [dm3] 2R_21109286_SNP [dm6]	G	A	4.735e^-4	0.565	INTRON ktub
3L	14832998	3L_14832998_SNP [dm3] 3L_14839898_SNP [dm6]	A	G	4.740e^-4	0.565	INTRON CG17839
2R	11758662	2R_11758662_SNP [dm3] 2R_15871157_SNP [dm6]	T	A	4.749e^-4	0.565	UTR_3_PRIME sli	TF binding site mE1_TFBS_cad
X	14661016	X_14661016_SNP [dm3] X_14766983_SNP [dm6]	T	C	4.753e^-4	0.565	INTERGENIC
X	14661018	X_14661018_SNP [dm3] X_14766985_SNP [dm6]	C	T	4.753e^-4	0.565	INTERGENIC
X	14661019	X_14661019_SNP [dm3] X_14766986_SNP [dm6]	G	C	4.753e^-4	0.565	INTERGENIC
2L	18195451	2L_18195451_SNP [dm3] 2L_18195451_SNP [dm6]	T	C	4.769e^-4	0.565	INTRON CG42750	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	10177670	X_10177670_SNP [dm3] X_10283637_SNP [dm6]	G	A	4.769e^-4	0.565	INTRON alpha-Man-I
2R	11049856	2R_11049856_SNP [dm3] 2R_15162351_SNP [dm6]	T	C	4.779e^-4	0.565	INTRON igl	TF binding site mE1_TFBS_inv
X	11168121	X_11168121_SNP [dm3] X_11274088_SNP [dm6]	C	T	4.787e^-4	0.565	INTRON CG44422
3L	9172111	3L_9172111_SNP [dm3] 3L_9179011_SNP [dm6]	T	A	4.798e^-4	0.565	INTRON Rdl
2L	1730382	2L_1730382_SNP [dm3] 2L_1730382_SNP [dm6]	T	G	4.805e^-4	0.565	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7068395	3R_7068395_SNP [dm3] 3R_11242673_SNP [dm6]	A	T	4.814e^-4	0.565	UTR_3_PRIME CG17734 DOWNSTREAM scpr-A INTRON CG17734
3R	18692019	3R_18692019_SNP [dm3] 3R_22866297_SNP [dm6]	A	C	4.817e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14526977	2L_14526977_SNP [dm3] 2L_14526977_SNP [dm6]	A	G	4.838e^-4	0.565	INTERGENIC
2L	14526978	2L_14526978_SNP [dm3] 2L_14526978_SNP [dm6]	T	C	4.838e^-4	0.565	INTERGENIC
2R	17753021	2R_17753021_SNP [dm3] 2R_21865516_SNP [dm6]	A	T	4.840e^-4	0.565	SYNONYMOUS_CODING comr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	25782370	3R_25782370_SNP [dm3] 3R_29956648_SNP [dm6]	A	G	4.843e^-4	0.565	SYNONYMOUS_CODING TkR99D
3R	27140059	3R_27140059_SNP [dm3] 3R_31314337_SNP [dm6]	A	T	4.846e^-4	0.565	INTRON CG34347
2L	1098816	2L_1098816_DEL [dm3] 2L_1098816_DEL [dm6]	TTTCCAGATAGACTCAACTT...	CG	4.853e^-4	0.565	INTRON CG4629
X	19573714	X_19573714_SNP [dm3] X_19679681_SNP [dm6]	T	G	4.857e^-4	0.565	INTRON dome
3R	24132048	3R_24132048_SNP [dm3] 3R_28306326_SNP [dm6]	C	T	4.857e^-4	0.565	INTERGENIC
2L	14914968	2L_14914968_SNP [dm3] 2L_14914968_SNP [dm6]	T	A	4.860e^-4	0.565	INTRON CG42313
2L	2333803	2L_2333803_INS [dm3] 2L_2333803_INS [dm6]	G	GG	4.867e^-4	0.565	INTRON CG9967 & 1 other
3R	15058076	3R_15058076_SNP [dm3] 3R_19232354_SNP [dm6]	C	T	4.882e^-4	0.565	SYNONYMOUS_CODING unc79
2R	11027684	2R_11027684_SNP [dm3] 2R_15140179_SNP [dm6]	A	G	4.884e^-4	0.565	INTRON chn	TF binding site mE1_TFBS_cad
2R	11027766	2R_11027766_SNP [dm3] 2R_15140261_SNP [dm6]	A	G	4.884e^-4	0.565	INTRON chn	TF binding site mE1_TFBS_cad
3R	6404811	3R_6404811_SNP [dm3] 3R_10579089_SNP [dm6]	T	C	4.884e^-4	0.565	INTRON hth	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3R	27146970	3R_27146970_SNP [dm3] 3R_31321248_SNP [dm6]	C	T	4.886e^-4	0.565	INTRON CG34347
3L	4655124	3L_4655124_SNP [dm3] 3L_4655124_SNP [dm6]	A	C	4.910e^-4	0.565	INTRON axo
3R	22800688	3R_22800688_SNP [dm3] 3R_26974966_SNP [dm6]	C	T	4.920e^-4	0.565	SYNONYMOUS_CODING CG5521	TF binding site mE1_TFBS_sens
3R	7843811	3R_7843811_SNP [dm3] 3R_12018089_SNP [dm6]	G	A	4.921e^-4	0.565	SYNONYMOUS_CODING Spt3	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14772620	3R_14772620_SNP [dm3] 3R_18946898_SNP [dm6]	C	A	4.926e^-4	0.565	INTRON CG42613
2R	12248611	2R_12248611_SNP [dm3] 2R_16361106_SNP [dm6]	A	G	4.932e^-4	0.565	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262	TF binding site mE1_TFBS_cad
2L	18162368	2L_18162368_SNP [dm3] 2L_18162368_SNP [dm6]	C	T	4.942e^-4	0.565	INTRON CG42750
2L	18162732	2L_18162732_SNP [dm3] 2L_18162732_SNP [dm6]	C	T	4.942e^-4	0.565	INTRON CG42750
2L	18163235	2L_18163235_SNP [dm3] 2L_18163235_SNP [dm6]	T	C	4.942e^-4	0.565	INTRON CG42750
2L	18164059	2L_18164059_SNP [dm3] 2L_18164059_SNP [dm6]	G	A	4.942e^-4	0.565	INTRON CG42750
2L	18168657	2L_18168657_SNP [dm3] 2L_18168657_SNP [dm6]	A	T	4.942e^-4	0.565	INTRON CG42750	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	18173273	2L_18173273_SNP [dm3] 2L_18173273_SNP [dm6]	A	T	4.942e^-4	0.565	INTRON CG42750
2L	18173928	2L_18173928_SNP [dm3] 2L_18173928_SNP [dm6]	A	G	4.942e^-4	0.565	INTRON CG42750
2L	18185594	2L_18185594_SNP [dm3] 2L_18185594_SNP [dm6]	G	T	4.942e^-4	0.565	UPSTREAM CG7180 INTRON CG42750 EXON CR44900	TF binding site mE1_TFBS_Trl
2L	18202461	2L_18202461_SNP [dm3] 2L_18202461_SNP [dm6]	C	G	4.942e^-4	0.565	INTRON CG42750
3L	18399183	3L_18399183_SNP [dm3] 3L_18406083_SNP [dm6]	G	A	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399187	3L_18399187_SNP [dm3] 3L_18406087_SNP [dm6]	T	G	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399191	3L_18399191_INS [dm3] 3L_18406091_INS [dm6]	A	AATT	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399193	3L_18399193_SNP [dm3] 3L_18406093_SNP [dm6]	C	G	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399197	3L_18399197_SNP [dm3] 3L_18406097_SNP [dm6]	C	A	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399199	3L_18399199_SNP [dm3] 3L_18406099_SNP [dm6]	G	C	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399210	3L_18399210_SNP [dm3] 3L_18406110_SNP [dm6]	T	G	4.957e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	6202335	X_6202335_SNP [dm3] X_6308302_SNP [dm6]	G	A	4.965e^-4	0.565	UPSTREAM CG15894 INTERGENIC
3R	22057153	3R_22057153_SNP [dm3] 3R_26231431_SNP [dm6]	A	C	4.987e^-4	0.565	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
3R	10736940	3R_10736940_DEL [dm3] 3R_14911218_DEL [dm6]	CAGGTTATC	C	4.989e^-4	0.565	INTERGENIC
3L	9750409	3L_9750409_SNP [dm3] 3L_9757309_SNP [dm6]	G	C	4.991e^-4	0.565	INTRON CG42268
3R	13673948	3R_13673948_SNP [dm3] 3R_17848226_SNP [dm6]	T	A	4.993e^-4	0.565	INTRON tinc
3R	13673953	3R_13673953_SNP [dm3] 3R_17848231_SNP [dm6]	C	T	4.993e^-4	0.565	INTRON tinc
3R	23529664	3R_23529664_SNP [dm3] 3R_27703942_SNP [dm6]	A	G	5.003e^-4	0.565	SYNONYMOUS_CODING CG12428 DOWNSTREAM btz	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	6518623	X_6518623_SNP [dm3] X_6624590_SNP [dm6]	T	C	5.009e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10780498	3R_10780498_SNP [dm3] 3R_14954776_SNP [dm6]	A	T	5.013e^-4	0.565	INTERGENIC
2R	8286924	2R_8286924_SNP [dm3] 2R_12399419_SNP [dm6]	G	T	5.017e^-4	0.565	DOWNSTREAM CG30048 INTERGENIC
X	6520633	X_6520633_INS [dm3] X_6626600_INS [dm6]	T	TT	5.021e^-4	0.565	INTRON pigs
2L	14066539	2L_14066539_SNP [dm3] 2L_14066539_SNP [dm6]	G	T	5.022e^-4	0.565	INTRON nAChRalpha5
3L	14273252	3L_14273252_SNP [dm3] 3L_14280152_SNP [dm6]	A	C	5.023e^-4	0.565	INTRON fz
3R	19830240	3R_19830240_SNP [dm3] 3R_24004518_SNP [dm6]	C	A	5.039e^-4	0.565	INTRON KrT95D
3R	26334196	3R_26334196_SNP [dm3] 3R_30508474_SNP [dm6]	A	T	5.042e^-4	0.565	DOWNSTREAM CG15539 INTRON CG34041
X	20811228	X_20811228_SNP [dm3] X_20940201_SNP [dm6]	T	G	5.047e^-4	0.565	DOWNSTREAM Npc1b INTERGENIC
3R	14772080	3R_14772080_SNP [dm3] 3R_18946358_SNP [dm6]	G	T	5.051e^-4	0.565	INTRON CG42613
2L	18193538	2L_18193538_SNP [dm3] 2L_18193538_SNP [dm6]	C	T	5.063e^-4	0.565	INTRON CG42750
3R	25437835	3R_25437835_SNP [dm3] 3R_29612113_SNP [dm6]	C	T	5.074e^-4	0.565	INTRON alph
3R	23243522	3R_23243522_SNP [dm3] 3R_27417800_SNP [dm6]	G	A	5.087e^-4	0.565	INTRON side
2L	9888384	2L_9888384_INS [dm3] 2L_9888384_INS [dm6]	T	TCCT	5.095e^-4	0.565	DOWNSTREAM CR44701 INTRON FKBP59	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1732417	2L_1732417_SNP [dm3] 2L_1732417_SNP [dm6]	T	C	5.105e^-4	0.565	UPSTREAM CG17646 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	14273181	3L_14273181_SNP [dm3] 3L_14280081_SNP [dm6]	G	A	5.120e^-4	0.565	INTRON fz
3L	430005	3L_430005_SNP [dm3] 3L_430005_SNP [dm6]	C	T	5.130e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	9902040	3R_9902040_SNP [dm3] 3R_14076318_SNP [dm6]	T	C	5.131e^-4	0.565	INTRON foxo
3R	9902045	3R_9902045_SNP [dm3] 3R_14076323_SNP [dm6]	C	A	5.131e^-4	0.565	INTRON foxo
2R	17781658	2R_17781658_DEL [dm3] 2R_21894153_DEL [dm6]	AATT	A	5.133e^-4	0.565	INTRON Fili
2L	15488115	2L_15488115_SNP [dm3] 2L_15488115_SNP [dm6]	T	C	5.162e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	13348261	3R_13348261_SNP [dm3] 3R_17522539_SNP [dm6]	A	T	5.162e^-4	0.565	INTERGENIC
2R	18069434	2R_18069434_SNP [dm3] 2R_22181929_SNP [dm6]	G	C	5.182e^-4	0.565	SYNONYMOUS_CODING CG11275 INTRON CG11170	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_sens
X	4007327	X_4007327_SNP [dm3] X_4113294_SNP [dm6]	G	A	5.202e^-4	0.565	SYNONYMOUS_CODING Nsun2 UPSTREAM dgt4	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3800278	2R_3800278_SNP [dm3] 2R_7912773_SNP [dm6]	A	T	5.216e^-4	0.565	INTRON CG30377
2L	728952	2L_728952_SNP [dm3] 2L_728952_SNP [dm6]	C	T	5.218e^-4	0.565	SYNONYMOUS_CODING Hsp60B	TF binding site mE1_TFBS_HSA
X	10620598	X_10620598_SNP [dm3] X_10726565_SNP [dm6]	A	G	5.251e^-4	0.565	INTRON CG32676	TF binding site mE1_TFBS_disco
3R	16873225	3R_16873225_SNP [dm3] 3R_21047503_SNP [dm6]	G	A	5.252e^-4	0.565	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
2L	18231706	2L_18231706_SNP [dm3] 2L_18231706_SNP [dm6]	G	T	5.265e^-4	0.565	INTRON CG42750
2L	18238691	2L_18238691_SNP [dm3] 2L_18238691_SNP [dm6]	A	G	5.265e^-4	0.565	INTRON CG42750
3R	22997243	3R_22997243_SNP [dm3] 3R_27171521_SNP [dm6]	C	T	5.280e^-4	0.565	DOWNSTREAM Ser INTERGENIC	regulatory region REDfly_CRMs
2R	17369179	2R_17369179_SNP [dm3] 2R_21481674_SNP [dm6]	A	T	5.282e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14286383	3L_14286383_SNP [dm3] 3L_14293283_SNP [dm6]	G	A	5.284e^-4	0.565	INTRON fz
X	3632475	X_3632475_SNP [dm3] X_3738442_SNP [dm6]	G	C	5.289e^-4	0.565	INTRON tlk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17930627	2R_17930627_SNP [dm3] 2R_22043122_SNP [dm6]	T	A	5.291e^-4	0.565	UPSTREAM PpD5 INTERGENIC
X	22189759	X_22189759_SNP [dm3] X_22787923_SNP [dm6]	G	A	5.320e^-4	0.565	INTRON CR44997
2R	6439843	2R_6439843_SNP [dm3] 2R_10552338_SNP [dm6]	A	G	5.321e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	17779840	2R_17779840_SNP [dm3] 2R_21892335_SNP [dm6]	T	C	5.321e^-4	0.565	INTRON Fili
3L	18357911	3L_18357911_SNP [dm3] 3L_18364811_SNP [dm6]	T	G	5.328e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	15063553	2R_15063553_SNP [dm3] 2R_19176048_SNP [dm6]	A	G	5.350e^-4	0.565	INTRON CG10737
2L	6127852	2L_6127852_SNP [dm3] 2L_6127852_SNP [dm6]	T	C	5.367e^-4	0.565	UPSTREAM WDR79 DOWNSTREAM CG42730 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9715726	2L_9715726_SNP [dm3] 2L_9715726_SNP [dm6]	G	A	5.377e^-4	0.565	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16873212	3R_16873212_SNP [dm3] 3R_21047490_SNP [dm6]	T	A	5.382e^-4	0.565	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
3L	13672765	3L_13672765_SNP [dm3] 3L_13679665_SNP [dm6]	T	C	5.388e^-4	0.565	INTRON bru-3
X	2326765	X_2326765_INS [dm3] X_2432732_INS [dm6]	G	GCCGATCGA	5.400e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	21102455	X_21102455_SNP [dm3] X_21231428_SNP [dm6]	C	G	5.405e^-4	0.565	UPSTREAM tRNA:R:19F & 1 other INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20308069	3R_20308069_SNP [dm3] 3R_24482347_SNP [dm6]	G	A	5.405e^-4	0.565	INTERGENIC
3L	17011517	3L_17011517_SNP [dm3] 3L_17018417_SNP [dm6]	T	C	5.408e^-4	0.565	SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21926801	3R_21926801_SNP [dm3] 3R_26101079_SNP [dm6]	G	A	5.410e^-4	0.565	INTERGENIC
3R	5941155	3R_5941155_SNP [dm3] 3R_10115433_SNP [dm6]	A	C	5.412e^-4	0.565	INTRON CG3940
3R	15834928	3R_15834928_SNP [dm3] 3R_20009206_SNP [dm6]	A	G	5.412e^-4	0.565	SYNONYMOUS_CODING MED25 UPSTREAM Hs6st	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
3R	15835072	3R_15835072_SNP [dm3] 3R_20009350_SNP [dm6]	A	G	5.412e^-4	0.565	SYNONYMOUS_CODING MED25 UPSTREAM Hs6st	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	15836273	3R_15836273_SNP [dm3] 3R_20010551_SNP [dm6]	T	C	5.412e^-4	0.565	NON_SYNONYMOUS_CODING MED25	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	16507905	3R_16507905_SNP [dm3] 3R_20682183_SNP [dm6]	A	T	5.412e^-4	0.565	INTERGENIC
3R	18802252	3R_18802252_SNP [dm3] 3R_22976530_SNP [dm6]	A	C	5.412e^-4	0.565	UPSTREAM CG17244 INTERGENIC
3R	18802266	3R_18802266_SNP [dm3] 3R_22976544_SNP [dm6]	C	A	5.412e^-4	0.565	UPSTREAM CG17244 INTERGENIC
X	6103572	X_6103572_SNP [dm3] X_6209539_SNP [dm6]	T	C	5.437e^-4	0.565	INTERGENIC
3R	21569011	3R_21569011_SNP [dm3] 3R_25743289_SNP [dm6]	A	T	5.447e^-4	0.565	INTRON LpR1
3L	12210137	3L_12210137_SNP [dm3] 3L_12217037_SNP [dm6]	T	A	5.450e^-4	0.565	INTRON app
2R	17592880	2R_17592880_SNP [dm3] 2R_21705375_SNP [dm6]	G	A	5.454e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17592985	2R_17592985_SNP [dm3] 2R_21705480_SNP [dm6]	A	T	5.454e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	3361578	3L_3361578_SNP [dm3] 3L_3361578_SNP [dm6]	G	A	5.464e^-4	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
3L	17199073	3L_17199073_INS [dm3] 3L_17205973_INS [dm6]	C	CCATCCCACC	5.465e^-4	0.565	INTRON Rbp6
2R	12095367	2R_12095367_SNP [dm3] 2R_16207862_SNP [dm6]	A	G	5.473e^-4	0.565	UPSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
3L	8081179	3L_8081179_SNP [dm3] 3L_8088079_SNP [dm6]	T	G	5.478e^-4	0.565	SYNONYMOUS_CODING CG7565 INTRON Ect4
2L	3655732	2L_3655732_SNP [dm3] 2L_3655732_SNP [dm6]	A	C	5.478e^-4	0.565	INTRON for	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6157087	2R_6157087_SNP [dm3] 2R_10269582_SNP [dm6]	G	A	5.481e^-4	0.565	DOWNSTREAM CG12910 INTRON CAP
2R	19295536	2R_19295536_SNP [dm3] 2R_23408013_SNP [dm6]	C	T	5.485e^-4	0.565	INTERGENIC
3R	19116275	3R_19116275_SNP [dm3] 3R_23290553_SNP [dm6]	C	T	5.508e^-4	0.565	UTR_3_PRIME pnt UPSTREAM CG4434 DOWNSTREAM pnt
2L	20860346	2L_20860346_SNP [dm3] 2L_20860346_SNP [dm6]	C	T	5.512e^-4	0.565	INTRON CG9336
3L	8775265	3L_8775265_SNP [dm3] 3L_8782165_SNP [dm6]	T	A	5.512e^-4	0.565	INTRON Fhos
X	21100056	X_21100056_SNP [dm3] X_21229029_SNP [dm6]	C	T	5.529e^-4	0.565	INTRON CG32521
3L	3364947	3L_3364947_SNP [dm3] 3L_3364947_SNP [dm6]	G	A	5.544e^-4	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12248422	2R_12248422_SNP [dm3] 2R_16360917_SNP [dm6]	T	A	5.545e^-4	0.565	SYNONYMOUS_CODING CG6262 UPSTREAM CG6262	TF binding site mE1_TFBS_cad
3R	8446056	3R_8446056_SNP [dm3] 3R_12620334_SNP [dm6]	T	C	5.548e^-4	0.565	UPSTREAM CR44942 INTERGENIC
2L	2564456	2L_2564456_SNP [dm3] 2L_2564456_SNP [dm6]	C	G	5.549e^-4	0.565	SYNONYMOUS_CODING Cyp309a1 DOWNSTREAM Cyp309a2
2R	18603590	2R_18603590_SNP [dm3] 2R_22716085_SNP [dm6]	C	T	5.549e^-4	0.565	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	9715039	2L_9715039_SNP [dm3] 2L_9715039_SNP [dm6]	G	A	5.554e^-4	0.565	UTR_3_PRIME Nckx30C	TF binding site BDTNP1_TFBS_dl
2L	18341131	2L_18341131_DEL [dm3] 2L_18341131_DEL [dm6]	CGTATTCC	C	5.555e^-4	0.565	INTRON Fas3	TF binding site mE1_TFBS_chinmo
2L	18788768	2L_18788768_SNP [dm3] 2L_18788768_SNP [dm6]	T	A	5.560e^-4	0.565	INTRON ham	TF binding site mE1_TFBS_cad
3R	16487395	3R_16487395_SNP [dm3] 3R_20661673_SNP [dm6]	G	T	5.570e^-4	0.565	INTERGENIC
2R	13759822	2R_13759822_SNP [dm3] 2R_17872317_SNP [dm6]	C	T	5.572e^-4	0.565	UPSTREAM Mapmodulin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	15442942	3L_15442942_SNP [dm3] 3L_15449842_SNP [dm6]	A	G	5.585e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	447224	3L_447224_INS [dm3] 3L_447224_INS [dm6]	C	CC	5.588e^-4	0.565	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	15905381	2L_15905381_SNP [dm3] 2L_15905381_SNP [dm6]	G	A	5.615e^-4	0.565	UTR_3_PRIME beat-Ib
3R	22950161	3R_22950161_SNP [dm3] 3R_27124439_SNP [dm6]	T	G	5.620e^-4	0.565	SYNONYMOUS_CODING CG6059 DOWNSTREAM CG6051	TF binding site mE1_TFBS_cad
2L	18197988	2L_18197988_SNP [dm3] 2L_18197988_SNP [dm6]	A	G	5.624e^-4	0.565	INTRON CG42750
3R	6500420	3R_6500420_SNP [dm3] 3R_10674698_SNP [dm6]	A	G	5.624e^-4	0.565	DOWNSTREAM CG6465 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
3L	6985815	3L_6985815_SNP [dm3] 3L_6992715_SNP [dm6]	C	T	5.626e^-4	0.565	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad
3R	15057938	3R_15057938_SNP [dm3] 3R_19232216_SNP [dm6]	A	G	5.631e^-4	0.565	SYNONYMOUS_CODING unc79
3L	3362268	3L_3362268_SNP [dm3] 3L_3362268_SNP [dm6]	T	G	5.638e^-4	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	13280129	2L_13280129_SNP [dm3] 2L_13280129_SNP [dm6]	A	G	5.642e^-4	0.565	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27021008	3R_27021008_SNP [dm3] 3R_31195286_SNP [dm6]	G	A	5.660e^-4	0.565	NON_SYNONYMOUS_CODING mesh DOWNSTREAM bnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	7172290	3L_7172290_SNP [dm3] 3L_7179190_SNP [dm6]	A	G	5.662e^-4	0.565	INTRON Dscam2
2R	11027745	2R_11027745_INS [dm3] 2R_15140240_INS [dm6]	A	AA	5.664e^-4	0.565	INTRON chn	TF binding site mE1_TFBS_cad
2L	3294908	2L_3294908_SNP [dm3] 2L_3294908_SNP [dm6]	G	A	5.678e^-4	0.565	UPSTREAM CG9664 DOWNSTREAM CG9663 INTERGENIC
2L	10021661	2L_10021661_SNP [dm3] 2L_10021661_SNP [dm6]	C	G	5.681e^-4	0.565	INTERGENIC
3L	7180613	3L_7180613_SNP [dm3] 3L_7187513_SNP [dm6]	G	A	5.721e^-4	0.565	INTRON Dscam2
3L	7180733	3L_7180733_SNP [dm3] 3L_7187633_SNP [dm6]	G	C	5.721e^-4	0.565	INTRON Dscam2
3R	22327629	3R_22327629_SNP [dm3] 3R_26501907_SNP [dm6]	C	T	5.721e^-4	0.565	INTRON plum
3R	23186952	3R_23186952_SNP [dm3] 3R_27361230_SNP [dm6]	T	C	5.721e^-4	0.565	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	23187093	3R_23187093_SNP [dm3] 3R_27361371_SNP [dm6]	T	G	5.721e^-4	0.565	SYNONYMOUS_CODING CG42534	TF binding site mE1_TFBS_chinmo
3R	4796315	3R_4796315_SNP [dm3] 3R_8970593_SNP [dm6]	C	T	5.721e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	19584585	X_19584585_SNP [dm3] X_19690552_SNP [dm6]	G	A	5.721e^-4	0.565	UTR_3_PRIME Mer DOWNSTREAM Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	17433295	3L_17433295_SNP [dm3] 3L_17440195_SNP [dm6]	T	A	5.733e^-4	0.565	INTRON CG18265
3R	7705264	3R_7705264_SNP [dm3] 3R_11879542_SNP [dm6]	T	C	5.747e^-4	0.565	SYNONYMOUS_CODING sad DOWNSTREAM CG6962	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	7705493	3R_7705493_SNP [dm3] 3R_11879771_SNP [dm6]	A	C	5.747e^-4	0.565	UTR_3_PRIME CG6962 DOWNSTREAM sad	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3R	7706084	3R_7706084_SNP [dm3] 3R_11880362_SNP [dm6]	G	A	5.747e^-4	0.565	SYNONYMOUS_CODING CG6962 DOWNSTREAM sad	TF binding site mE1_TFBS_cad
3R	21789724	3R_21789724_SNP [dm3] 3R_25964002_SNP [dm6]	C	G	5.757e^-4	0.565	NON_SYNONYMOUS_CODING boss	TF binding site mE1_TFBS_inv
2L	6140736	2L_6140736_SNP [dm3] 2L_6140736_SNP [dm6]	G	A	5.758e^-4	0.565	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	26650550	3R_26650550_SNP [dm3] 3R_30824828_SNP [dm6]	C	T	5.772e^-4	0.565	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_sens
2L	3913062	2L_3913062_SNP [dm3] 2L_3913062_SNP [dm6]	T	A	5.777e^-4	0.565	SYNONYMOUS_CODING CG31773 INTRON fred	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	21887853	3R_21887853_SNP [dm3] 3R_26062131_SNP [dm6]	G	A	5.779e^-4	0.565	SYNONYMOUS_CODING CG14551 DOWNSTREAM CG14544
3L	9678679	3L_9678679_SNP [dm3] 3L_9685579_SNP [dm6]	G	T	5.780e^-4	0.565	NON_SYNONYMOUS_CODING CG16719 INTRON CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23528826	3R_23528826_INS [dm3] 3R_27703104_INS [dm6]	T	CGA	5.784e^-4	0.565	UTR_3_PRIME btz DOWNSTREAM CG12428	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5816058	2L_5816058_SNP [dm3] 2L_5816058_SNP [dm6]	C	G	5.815e^-4	0.565	INTERGENIC
3R	27076252	3R_27076252_SNP [dm3] 3R_31250530_SNP [dm6]	G	A	5.817e^-4	0.565	INTRON qless	TF binding site mE1_TFBS_bab1
3R	19951298	3R_19951298_SNP [dm3] 3R_24125576_SNP [dm6]	A	G	5.821e^-4	0.565	SYNONYMOUS_CODING Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21963701	3R_21963701_SNP [dm3] 3R_26137979_SNP [dm6]	T	G	5.821e^-4	0.565	DOWNSTREAM CG6142 INTERGENIC
X	14504614	X_14504614_SNP [dm3] X_14610581_SNP [dm6]	C	A	5.822e^-4	0.565	SYNONYMOUS_CODING NetA	TF binding site mE1_TFBS_cad
2L	12575337	2L_12575337_SNP [dm3] 2L_12575337_SNP [dm6]	G	C	5.831e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	12621916	3L_12621916_SNP [dm3] 3L_12628816_SNP [dm6]	G	A	5.833e^-4	0.565	INTRON CR32111
2R	6263667	2R_6263667_SNP [dm3] 2R_10376162_SNP [dm6]	C	G	5.844e^-4	0.565	DOWNSTREAM Ir47b & 1 other INTRON CG42732
X	20244630	X_20244630_SNP [dm3] X_20373603_SNP [dm6]	T	C	5.852e^-4	0.565	INTERGENIC
3L	1743692	3L_1743692_SNP [dm3] 3L_1743692_SNP [dm6]	T	G	5.853e^-4	0.565	SYNONYMOUS_CODING Gk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2575384	3L_2575384_SNP [dm3] 3L_2575384_SNP [dm6]	T	A	5.855e^-4	0.565	INTRON msn
2R	5282347	2R_5282347_SNP [dm3] 2R_9394842_SNP [dm6]	T	G	5.864e^-4	0.565	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
X	19574939	X_19574939_SNP [dm3] X_19680906_SNP [dm6]	C	T	5.883e^-4	0.565	INTRON dome	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
2L	15554721	2L_15554721_SNP [dm3] 2L_15554721_SNP [dm6]	C	G	5.889e^-4	0.565	UTR_5_PRIME kek3
X	19584416	X_19584416_SNP [dm3] X_19690383_SNP [dm6]	C	A	5.892e^-4	0.565	UTR_3_PRIME Mer DOWNSTREAM Mer	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	3740095	3L_3740095_SNP [dm3] 3L_3740095_SNP [dm6]	T	G	5.894e^-4	0.565	INTRON CG32264
3R	15223917	3R_15223917_SNP [dm3] 3R_19398195_SNP [dm6]	A	C	5.898e^-4	0.565	NON_SYNONYMOUS_CODING CG31244 INTRON Ino80
2L	18452804	2L_18452804_SNP [dm3] 2L_18452804_SNP [dm6]	G	A	5.914e^-4	0.565	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	18459144	2L_18459144_SNP [dm3] 2L_18459144_SNP [dm6]	C	T	5.914e^-4	0.565	INTRON let-7-C
3R	26687169	3R_26687169_SNP [dm3] 3R_30861447_SNP [dm6]	C	A	5.916e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_twi
3L	9128512	3L_9128512_SNP [dm3] 3L_9135412_SNP [dm6]	G	A	5.935e^-4	0.565	SYNONYMOUS_CODING Dhpr DOWNSTREAM Use1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8116838	X_8116838_SNP [dm3] X_8222805_SNP [dm6]	C	A	5.957e^-4	0.565	INTRON sdt	TF binding site mE1_TFBS_bab1
3L	9357421	3L_9357421_SNP [dm3] 3L_9364321_SNP [dm6]	G	T	5.971e^-4	0.565	UPSTREAM CG4447 INTRON Klp67A
3L	18357960	3L_18357960_SNP [dm3] 3L_18364860_SNP [dm6]	C	A	5.998e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20677754	X_20677754_SNP [dm3] X_20806727_SNP [dm6]	T	C	5.998e^-4	0.565	INTRON shakB
X	5099945	X_5099945_SNP [dm3] X_5205912_SNP [dm6]	C	T	6.013e^-4	0.565	INTRON CG15465 & 1 other
3R	4794763	3R_4794763_SNP [dm3] 3R_8969041_SNP [dm6]	T	G	6.014e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_Kr
3R	17920066	3R_17920066_DEL [dm3] 3R_22094344_DEL [dm6]	GTAATG	T	6.014e^-4	0.565	INTRON CG5778
2R	8923469	2R_8923469_SNP [dm3] 2R_13035964_SNP [dm6]	T	C	6.016e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5517137	3L_5517137_SNP [dm3] 3L_5524037_SNP [dm6]	C	G	6.020e^-4	0.565	INTRON Lkr
X	9592044	X_9592044_SNP [dm3] X_9698011_SNP [dm6]	T	A	6.024e^-4	0.565	DOWNSTREAM btd INTERGENIC
X	9592057	X_9592057_SNP [dm3] X_9698024_SNP [dm6]	A	T	6.024e^-4	0.565	DOWNSTREAM btd INTERGENIC
X	9592058	X_9592058_SNP [dm3] X_9698025_SNP [dm6]	G	A	6.024e^-4	0.565	DOWNSTREAM btd INTERGENIC
2L	3890884	2L_3890884_SNP [dm3] 2L_3890884_SNP [dm6]	G	T	6.025e^-4	0.565	UPSTREAM capu INTRON capu
2R	11795266	2R_11795266_SNP [dm3] 2R_15907761_SNP [dm6]	C	T	6.033e^-4	0.565	INTRON sli
2R	17369188	2R_17369188_SNP [dm3] 2R_21481683_SNP [dm6]	G	A	6.033e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	20229039	3R_20229039_SNP [dm3] 3R_24403317_SNP [dm6]	G	A	6.053e^-4	0.565	SYNONYMOUS_CODING nAChRalpha1
X	3477823	X_3477823_SNP [dm3] X_3583790_SNP [dm6]	C	T	6.064e^-4	0.565	INTRON AstA-R1
2R	16253834	2R_16253834_SNP [dm3] 2R_20366329_SNP [dm6]	C	T	6.065e^-4	0.565	INTERGENIC
3R	10360632	3R_10360632_SNP [dm3] 3R_14534910_SNP [dm6]	G	T	6.085e^-4	0.565	INTRON Pde6
3L	18403585	3L_18403585_SNP [dm3] 3L_18410485_SNP [dm6]	T	G	6.087e^-4	0.565	INTERGENIC
2L	20839956	2L_20839956_SNP [dm3] 2L_20839956_SNP [dm6]	G	A	6.099e^-4	0.565	UPSTREAM CG31676 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	3479064	X_3479064_SNP [dm3] X_3585031_SNP [dm6]	C	A	6.114e^-4	0.565	INTRON AstA-R1
X	3479072	X_3479072_SNP [dm3] X_3585039_SNP [dm6]	A	C	6.114e^-4	0.565	INTRON AstA-R1
X	8672514	X_8672514_SNP [dm3] X_8778481_SNP [dm6]	C	A	6.119e^-4	0.565	INTRON Lim1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3L	9184608	3L_9184608_SNP [dm3] 3L_9191508_SNP [dm6]	C	A	6.119e^-4	0.565	INTERGENIC
3R	14680486	3R_14680486_SNP [dm3] 3R_18854764_SNP [dm6]	A	C	6.139e^-4	0.565	INTERGENIC
3R	14680558	3R_14680558_SNP [dm3] 3R_18854836_SNP [dm6]	C	T	6.139e^-4	0.565	INTERGENIC
3R	14680571	3R_14680571_SNP [dm3] 3R_18854849_SNP [dm6]	T	A	6.139e^-4	0.565	INTERGENIC
3R	14680647	3R_14680647_SNP [dm3] 3R_18854925_SNP [dm6]	T	G	6.139e^-4	0.565	INTERGENIC
3R	14680693	3R_14680693_SNP [dm3] 3R_18854971_SNP [dm6]	T	A	6.139e^-4	0.565	INTERGENIC
2L	18238810	2L_18238810_SNP [dm3] 2L_18238810_SNP [dm6]	G	A	6.148e^-4	0.565	INTRON CG42750
2L	18238849	2L_18238849_SNP [dm3] 2L_18238849_SNP [dm6]	A	T	6.148e^-4	0.565	INTRON CG42750
3L	4754831	3L_4754831_SNP [dm3] 3L_4754831_SNP [dm6]	A	T	6.165e^-4	0.565	UPSTREAM CR43881 INTRON RhoGEF64C
3L	4754834	3L_4754834_SNP [dm3] 3L_4754834_SNP [dm6]	C	A	6.165e^-4	0.565	UPSTREAM CR43881 INTRON RhoGEF64C
3L	6242731	3L_6242731_SNP [dm3] 3L_6249631_SNP [dm6]	T	A	6.168e^-4	0.565	INTRON Best2
2L	10018891	2L_10018891_INS [dm3] 2L_10018891_INS [dm6]	T	TT	6.168e^-4	0.565	INTERGENIC
2L	10018915	2L_10018915_SNP [dm3] 2L_10018915_SNP [dm6]	T	C	6.168e^-4	0.565	INTERGENIC
2L	10018926	2L_10018926_SNP [dm3] 2L_10018926_SNP [dm6]	C	G	6.168e^-4	0.565	INTERGENIC
2L	10018933	2L_10018933_SNP [dm3] 2L_10018933_SNP [dm6]	T	A	6.168e^-4	0.565	INTERGENIC
2L	10018951	2L_10018951_SNP [dm3] 2L_10018951_SNP [dm6]	C	T	6.168e^-4	0.565	INTERGENIC
3L	13672764	3L_13672764_SNP [dm3] 3L_13679664_SNP [dm6]	C	T	6.183e^-4	0.565	INTRON bru-3
X	6704376	X_6704376_SNP [dm3] X_6810343_SNP [dm6]	C	T	6.185e^-4	0.565	SYNONYMOUS_CODING pod1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5079795	3R_5079795_SNP [dm3] 3R_9254073_SNP [dm6]	A	G	6.191e^-4	0.565	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_inv
2R	12090714	2R_12090714_SNP [dm3] 2R_16203209_SNP [dm6]	A	G	6.197e^-4	0.565	UPSTREAM shark DOWNSTREAM mrj INTERGENIC
2L	2707957	2L_2707957_SNP [dm3] 2L_2707957_SNP [dm6]	T	C	6.202e^-4	0.565	INTRON CG31690
3R	5079738	3R_5079738_SNP [dm3] 3R_9254016_SNP [dm6]	A	T	6.204e^-4	0.565	DOWNSTREAM St2 EXON CR16735
2L	16366212	2L_16366212_SNP [dm3] 2L_16366212_SNP [dm6]	A	G	6.208e^-4	0.565	SYNONYMOUS_CODING jhamt	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	5628090	2L_5628090_SNP [dm3] 2L_5628090_SNP [dm6]	C	A	6.213e^-4	0.565	INTRON CG31646
3R	24197056	3R_24197056_SNP [dm3] 3R_28371334_SNP [dm6]	T	C	6.214e^-4	0.565	INTERGENIC
3L	1700696	3L_1700696_SNP [dm3] 3L_1700696_SNP [dm6]	T	A	6.223e^-4	0.565	DOWNSTREAM CG13931 INTRON CG7991	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	15058073	3R_15058073_SNP [dm3] 3R_19232351_SNP [dm6]	C	T	6.231e^-4	0.565	SYNONYMOUS_CODING unc79
3R	8608426	3R_8608426_SNP [dm3] 3R_12782704_SNP [dm6]	G	A	6.249e^-4	0.565	INTRON beat-Vc
3R	8608431	3R_8608431_SNP [dm3] 3R_12782709_SNP [dm6]	A	C	6.249e^-4	0.565	INTRON beat-Vc
2L	3855427	2L_3855427_SNP [dm3] 2L_3855427_SNP [dm6]	C	A	6.263e^-4	0.565	UPSTREAM CR45449 INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	3855487	2L_3855487_SNP [dm3] 2L_3855487_SNP [dm6]	G	A	6.263e^-4	0.565	UPSTREAM CR45449 DOWNSTREAM CR45450 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	16873207	3R_16873207_SNP [dm3] 3R_21047485_SNP [dm6]	T	A	6.267e^-4	0.565	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
2L	18157965	2L_18157965_SNP [dm3] 2L_18157965_SNP [dm6]	C	T	6.269e^-4	0.565	SYNONYMOUS_CODING CG7200 DOWNSTREAM CG5783	TF binding site mE1_TFBS_sens
3R	10810771	3R_10810771_SNP [dm3] 3R_14985049_SNP [dm6]	C	T	6.293e^-4	0.565	INTERGENIC
X	13338235	X_13338235_SNP [dm3] X_13444202_SNP [dm6]	T	C	6.293e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	14698704	2R_14698704_INS [dm3] 2R_18811199_INS [dm6]	A	AAATTACACTCCACA...	6.296e^-4	0.565	INTRON CG15096
2L	21182939	2L_21182939_SNP [dm3] 2L_21182939_SNP [dm6]	G	A	6.312e^-4	0.565	UTR_3_PRIME Ret DOWNSTREAM Mcm10
2L	3151877	2L_3151877_SNP [dm3] 2L_3151877_SNP [dm6]	C	G	6.321e^-4	0.565	INTRON Mad
2L	9205978	2L_9205978_SNP [dm3] 2L_9205978_SNP [dm6]	G	T	6.343e^-4	0.565	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	9205990	2L_9205990_SNP [dm3] 2L_9205990_SNP [dm6]	G	T	6.343e^-4	0.565	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	9205997	2L_9205997_SNP [dm3] 2L_9205997_SNP [dm6]	C	G	6.343e^-4	0.565	INTRON tai	TF binding site BDTNP1_TFBS_dl
2L	13026099	2L_13026099_SNP [dm3] 2L_13026099_SNP [dm6]	T	G	6.347e^-4	0.565	INTRON CG9932
X	10975973	X_10975973_SNP [dm3] X_11081940_SNP [dm6]	G	C	6.348e^-4	0.565	INTRON sev	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	18895284	3R_18895284_SNP [dm3] 3R_23069562_SNP [dm6]	C	T	6.357e^-4	0.565	DOWNSTREAM CG13830 INTERGENIC
2L	14526958	2L_14526958_DEL [dm3] 2L_14526958_DEL [dm6]	TAATAATATAATATAA...	T	6.371e^-4	0.565	INTERGENIC
3R	22474928	3R_22474928_SNP [dm3] 3R_26649206_SNP [dm6]	G	T	6.381e^-4	0.565	UTR_3_PRIME beat-VII
2L	1852958	2L_1852958_SNP [dm3] 2L_1852958_SNP [dm6]	T	C	6.413e^-4	0.565	INTRON wry
3L	13415870	3L_13415870_DEL [dm3] 3L_13422770_DEL [dm6]	TCAT	T	6.420e^-4	0.565	UPSTREAM CG32121 DOWNSTREAM CG33263 INTERGENIC
2L	18662951	2L_18662951_SNP [dm3] 2L_18662951_SNP [dm6]	T	C	6.428e^-4	0.565	INTERGENIC
X	21120481	X_21120481_SNP [dm3] X_21249454_SNP [dm6]	G	C	6.429e^-4	0.565	DOWNSTREAM CG1722 INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2R	8907871	2R_8907871_SNP [dm3] 2R_13020366_SNP [dm6]	A	G	6.433e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_D
3L	13672759	3L_13672759_SNP [dm3] 3L_13679659_SNP [dm6]	T	C	6.433e^-4	0.565	INTRON bru-3
3L	477392	3L_477392_SNP [dm3] 3L_477392_SNP [dm6]	T	C	6.448e^-4	0.565	INTRON klar
3R	21802113	3R_21802113_INS [dm3] 3R_25976391_INS [dm6]	C	CCCCAATTCCTAT...	6.454e^-4	0.565	INTRON CG42261
3R	23243863	3R_23243863_SNP [dm3] 3R_27418141_SNP [dm6]	C	T	6.466e^-4	0.565	INTRON side
3L	6298614	3L_6298614_SNP [dm3] 3L_6305514_SNP [dm6]	G	A	6.468e^-4	0.565	UPSTREAM CR45113 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
3R	23524058	3R_23524058_SNP [dm3] 3R_27698336_SNP [dm6]	T	C	6.472e^-4	0.565	SYNONYMOUS_CODING ALiX	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	17958020	X_17958020_SNP [dm3] X_18063987_SNP [dm6]	G	T	6.473e^-4	0.565	UPSTREAM Sh & 1 other INTERGENIC
2L	9374088	2L_9374088_SNP [dm3] 2L_9374088_SNP [dm6]	G	A	6.481e^-4	0.565	DOWNSTREAM CR43865 INTRON Shawl
2L	9374102	2L_9374102_SNP [dm3] 2L_9374102_SNP [dm6]	G	A	6.481e^-4	0.565	DOWNSTREAM CR43865 INTRON Shawl
2L	9374110	2L_9374110_SNP [dm3] 2L_9374110_SNP [dm6]	C	A	6.481e^-4	0.565	DOWNSTREAM CR43865 INTRON Shawl
2R	13761014	2R_13761014_SNP [dm3] 2R_17873509_SNP [dm6]	A	C	6.483e^-4	0.565	UPSTREAM Elk INTERGENIC
2L	2193719	2L_2193719_SNP [dm3] 2L_2193719_SNP [dm6]	G	A	6.491e^-4	0.565	UPSTREAM CG34172 INTRON CG34172	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17364885	2R_17364885_SNP [dm3] 2R_21477380_SNP [dm6]	G	A	6.499e^-4	0.565	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	998715	X_998715_SNP [dm3] X_1104682_SNP [dm6]	T	G	6.515e^-4	0.565	INTRON CG3655
3L	18399348	3L_18399348_SNP [dm3] 3L_18406248_SNP [dm6]	A	C	6.524e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18399357	3L_18399357_SNP [dm3] 3L_18406257_SNP [dm6]	T	C	6.524e^-4	0.565	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13315601	3L_13315601_SNP [dm3] 3L_13322501_SNP [dm6]	A	T	6.525e^-4	0.565	INTERGENIC
3L	9172015	3L_9172015_SNP [dm3] 3L_9178915_SNP [dm6]	G	C	6.529e^-4	0.565	INTRON Rdl
2L	9420462	2L_9420462_SNP [dm3] 2L_9420462_SNP [dm6]	A	G	6.533e^-4	0.565	INTRON Mco1	TF binding site mE1_TFBS_cad
3R	19348235	3R_19348235_SNP [dm3] 3R_23522513_SNP [dm6]	T	C	6.534e^-4	0.565	UTR_3_PRIME CG10175 UPSTREAM CG10177 DOWNSTREAM CG10175	TF binding site mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn
3R	7705450	3R_7705450_SNP [dm3] 3R_11879728_SNP [dm6]	T	A	6.537e^-4	0.565	UTR_3_PRIME sad & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
2L	14333328	2L_14333328_SNP [dm3] 2L_14333328_SNP [dm6]	A	G	6.545e^-4	0.565	SYNONYMOUS_CODING ms_2_34Fe UPSTREAM CG33090
2L	14333366	2L_14333366_SNP [dm3] 2L_14333366_SNP [dm6]	T	C	6.545e^-4	0.565	UPSTREAM CG33090 INTRON ms_2_34Fe
X	19583492	X_19583492_DEL [dm3] X_19689459_DEL [dm6]	TCCTTTAACGCCGTGCACGC...	T	6.548e^-4	0.565	UPSTREAM CG14227 DOWNSTREAM Mer INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	17121806	X_17121806_SNP [dm3] X_17227773_SNP [dm6]	A	C	6.577e^-4	0.565	UPSTREAM CG10598 INTERGENIC
3R	17705027	3R_17705027_SNP [dm3] 3R_21879305_SNP [dm6]	C	T	6.582e^-4	0.565	SYNONYMOUS_CODING P5CDh2 UPSTREAM CG34148 EXON CR45046	TF binding site mE1_TFBS_sens
3L	13365475	3L_13365475_SNP [dm3] 3L_13372375_SNP [dm6]	C	T	6.597e^-4	0.565	INTERGENIC
3L	13365482	3L_13365482_SNP [dm3] 3L_13372382_SNP [dm6]	T	C	6.597e^-4	0.565	INTERGENIC
3L	17010593	3L_17010593_SNP [dm3] 3L_17017493_SNP [dm6]	A	T	6.609e^-4	0.565	SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15365823	2R_15365823_INS [dm3] 2R_19478318_INS [dm6]	A	AA	6.609e^-4	0.565	INTRON par-1
3L	16747416	3L_16747416_SNP [dm3] 3L_16754316_SNP [dm6]	G	T	6.617e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad
3R	25847026	3R_25847026_SNP [dm3] 3R_30021304_SNP [dm6]	T	A	6.625e^-4	0.565	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	5621829	2L_5621829_SNP [dm3] 2L_5621829_SNP [dm6]	G	A	6.626e^-4	0.565	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo
X	11868459	X_11868459_SNP [dm3] X_11974426_SNP [dm6]	A	G	6.633e^-4	0.565	INTRON cac
3L	6066744	3L_6066744_SNP [dm3] 3L_6073644_SNP [dm6]	A	C	6.647e^-4	0.565	SYNONYMOUS_CODING CG13295 DOWNSTREAM CG6602
2L	2572686	2L_2572686_SNP [dm3] 2L_2572686_SNP [dm6]	T	C	6.674e^-4	0.565	DOWNSTREAM Rad1 & 1 other INTRON Cyp309a2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24602440	3R_24602440_SNP [dm3] 3R_28776718_SNP [dm6]	A	G	6.678e^-4	0.565	UPSTREAM CR44952 INTERGENIC
2L	18233786	2L_18233786_DEL [dm3] 2L_18233786_DEL [dm6]	CGTC	A	6.678e^-4	0.565	INTRON CG42750
3R	23329139	3R_23329139_SNP [dm3] 3R_27503417_SNP [dm6]	G	A	6.681e^-4	0.565	UPSTREAM CG5402 INTERGENIC
X	13316601	X_13316601_INS [dm3] X_13422568_INS [dm6]	T	TTCCATGTTCCAGCATTTAT...	6.682e^-4	0.565	INTERGENIC
3R	19307031	3R_19307031_SNP [dm3] 3R_23481309_SNP [dm6]	G	T	6.703e^-4	0.565	UPSTREAM Ir94f INTERGENIC
2L	7582834	2L_7582834_SNP [dm3] 2L_7582834_SNP [dm6]	A	G	6.705e^-4	0.565	SYNONYMOUS_CODING Spn28B
3R	20976514	3R_20976514_SNP [dm3] 3R_25150792_SNP [dm6]	G	T	6.706e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9933075	2L_9933075_SNP [dm3] 2L_9933075_SNP [dm6]	C	T	6.721e^-4	0.565	INTRON Cpr30F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24603575	3R_24603575_SNP [dm3] 3R_28777853_SNP [dm6]	G	A	6.728e^-4	0.565	DOWNSTREAM CR44952 INTERGENIC
2L	14066618	2L_14066618_SNP [dm3] 2L_14066618_SNP [dm6]	G	C	6.736e^-4	0.565	INTRON nAChRalpha5
2L	20592437	2L_20592437_SNP [dm3] 2L_20592437_SNP [dm6]	A	T	6.748e^-4	0.565	INTRON CR44909
3R	21784727	3R_21784727_SNP [dm3] 3R_25959005_SNP [dm6]	T	A	6.760e^-4	0.565	UPSTREAM CG14540 INTERGENIC
2L	9616161	2L_9616161_SNP [dm3] 2L_9616161_SNP [dm6]	A	G	6.766e^-4	0.565	UTR_3_PRIME Trx-2 UPSTREAM GlcAT-S DOWNSTREAM Trx-2
2R	17592910	2R_17592910_SNP [dm3] 2R_21705405_SNP [dm6]	T	A	6.779e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17592912	2R_17592912_SNP [dm3] 2R_21705407_SNP [dm6]	G	A	6.779e^-4	0.565	UPSTREAM HmgZ INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	18233479	2L_18233479_SNP [dm3] 2L_18233479_SNP [dm6]	G	T	6.781e^-4	0.565	INTRON CG42750
3R	7843445	3R_7843445_SNP [dm3] 3R_12017723_SNP [dm6]	C	T	6.784e^-4	0.565	SYNONYMOUS_CODING Spt3 UPSTREAM CG3313	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	15733645	2R_15733645_SNP [dm3] 2R_19846140_SNP [dm6]	C	G	6.785e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	21070571	2R_21070571_SNP [dm3] 2R_25183048_SNP [dm6]	A	G	6.786e^-4	0.565	DOWNSTREAM CG9380 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25144414	3R_25144414_DEL [dm3] 3R_29318692_DEL [dm6]	GAGAG	G	6.797e^-4	0.565	INTRON Cnx99A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	5967663	3L_5967663_SNP [dm3] 3L_5974563_SNP [dm6]	A	T	6.798e^-4	0.565	INTRON CG10479	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	18162500	2L_18162500_SNP [dm3] 2L_18162500_SNP [dm6]	A	T	6.806e^-4	0.565	INTRON CG42750
2L	18177234	2L_18177234_SNP [dm3] 2L_18177234_SNP [dm6]	C	A	6.806e^-4	0.565	INTRON CG42750	transposable element FlyBase
2L	18191221	2L_18191221_SNP [dm3] 2L_18191221_SNP [dm6]	T	G	6.806e^-4	0.565	INTRON CG42750
3L	7753309	3L_7753309_INS [dm3] 3L_7760209_INS [dm6]	T	TAT	6.806e^-4	0.565	UPSTREAM Hn INTERGENIC
2L	3952316	2L_3952316_DEL [dm3] 2L_3952316_DEL [dm6]	AAGTGGAGGC	A	6.809e^-4	0.565	INTRON fred
X	6518628	X_6518628_SNP [dm3] X_6624595_SNP [dm6]	C	T	6.809e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	10590241	3R_10590241_SNP [dm3] 3R_14764519_SNP [dm6]	T	C	6.815e^-4	0.565	INTRON jvl
3R	10590243	3R_10590243_SNP [dm3] 3R_14764521_SNP [dm6]	G	A	6.815e^-4	0.565	INTRON jvl
3R	10810759	3R_10810759_SNP [dm3] 3R_14985037_SNP [dm6]	G	A	6.817e^-4	0.565	INTERGENIC
3L	3779525	3L_3779525_SNP [dm3] 3L_3779525_SNP [dm6]	T	G	6.835e^-4	0.565	INTRON CG32264
3R	8719617	3R_8719617_SNP [dm3] 3R_12893895_SNP [dm6]	G	A	6.846e^-4	0.565	DOWNSTREAM CR33929 & 1 other INTERGENIC
2L	17674178	2L_17674178_DEL [dm3] 2L_17674178_DEL [dm6]	GTG	G	6.848e^-4	0.565	INTRON CadN
2R	19673384	2R_19673384_SNP [dm3] 2R_23785861_SNP [dm6]	C	T	6.851e^-4	0.565	INTRON CG9850
2L	18386737	2L_18386737_SNP [dm3] 2L_18386737_SNP [dm6]	T	G	6.853e^-4	0.565	UTR_3_PRIME Fas3 INTRON Fas3
3L	8756423	3L_8756423_SNP [dm3] 3L_8763323_SNP [dm6]	C	G	6.879e^-4	0.565	INTRON Fhos
2R	6439820	2R_6439820_SNP [dm3] 2R_10552315_SNP [dm6]	C	A	6.891e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
2R	6439847	2R_6439847_SNP [dm3] 2R_10552342_SNP [dm6]	C	T	6.891e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	8524862	3L_8524862_SNP [dm3] 3L_8531762_SNP [dm6]	T	G	6.891e^-4	0.565	SYNONYMOUS_CODING foi	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	24235171	3R_24235171_SNP [dm3] 3R_28409449_SNP [dm6]	C	G	6.901e^-4	0.565	INTERGENIC
2L	3394055	2L_3394055_SNP [dm3] 2L_3394055_SNP [dm6]	A	T	6.925e^-4	0.565	INTERGENIC
3L	3361917	3L_3361917_SNP [dm3] 3L_3361917_SNP [dm6]	C	T	6.926e^-4	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
2L	5378474	2L_5378474_DEL [dm3] 2L_5378474_DEL [dm6]	TAATCATATACAA...	T	6.930e^-4	0.565	DOWNSTREAM CR42850 INTERGENIC
3L	17458710	3L_17458710_SNP [dm3] 3L_17465610_SNP [dm6]	A	G	6.953e^-4	0.565	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17458713	3L_17458713_SNP [dm3] 3L_17465613_SNP [dm6]	A	G	6.953e^-4	0.565	UPSTREAM CG7603 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13042023	X_13042023_SNP [dm3] X_13147990_SNP [dm6]	T	C	6.964e^-4	0.565	INTRON CG32645
3L	9183748	3L_9183748_SNP [dm3] 3L_9190648_SNP [dm6]	T	A	6.977e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	1155218	2R_1155218_SNP [dm3] 2R_5267713_SNP [dm6]	G	T	6.985e^-4	0.565	INTRON d4
X	15537587	X_15537587_SNP [dm3] X_15643554_SNP [dm6]	A	G	6.991e^-4	0.565	UPSTREAM CG8117 INTERGENIC
3L	3364797	3L_3364797_SNP [dm3] 3L_3364797_SNP [dm6]	A	G	6.993e^-4	0.565	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20437548	3R_20437548_SNP [dm3] 3R_24611826_SNP [dm6]	C	T	6.999e^-4	0.565	INTRON mld
2R	17945637	2R_17945637_SNP [dm3] 2R_22058132_SNP [dm6]	A	G	7.008e^-4	0.565	UPSTREAM CG13500 DOWNSTREAM CG13501 INTERGENIC
3L	6719971	3L_6719971_SNP [dm3] 3L_6726871_SNP [dm6]	C	A	7.011e^-4	0.565	INTERGENIC
3L	13383030	3L_13383030_SNP [dm3] 3L_13389930_SNP [dm6]	G	A	7.013e^-4	0.565	UTR_5_PRIME Poc1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	15644911	X_15644911_SNP [dm3] X_15750878_SNP [dm6]	A	G	7.021e^-4	0.565	SYNONYMOUS_CODING CG8239 DOWNSTREAM Graf	TF binding site mE1_TFBS_cad
2R	18603520	2R_18603520_SNP [dm3] 2R_22716015_SNP [dm6]	A	G	7.028e^-4	0.565	SYNONYMOUS_CODING CG30268	TF binding site BDTNP1_TFBS_twi
X	21120772	X_21120772_SNP [dm3] X_21249745_SNP [dm6]	A	T	7.038e^-4	0.565	DOWNSTREAM CG1722 INTRON CG32521
3L	13369440	3L_13369440_SNP [dm3] 3L_13376340_SNP [dm6]	T	G	7.041e^-4	0.565	INTERGENIC
X	9592140	X_9592140_SNP [dm3] X_9698107_SNP [dm6]	C	T	7.046e^-4	0.565	DOWNSTREAM btd INTERGENIC
X	6518634	X_6518634_SNP [dm3] X_6624601_SNP [dm6]	C	T	7.051e^-4	0.565	INTRON pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	24244373	3R_24244373_SNP [dm3] 3R_28418651_SNP [dm6]	G	A	7.066e^-4	0.565	UTR_5_PRIME beat-VI	TF binding site mE1_TFBS_HSA
3R	6033848	3R_6033848_SNP [dm3] 3R_10208126_SNP [dm6]	A	T	7.078e^-4	0.565	INTRON Syn & 1 other
3R	20229114	3R_20229114_SNP [dm3] 3R_24403392_SNP [dm6]	G	A	7.084e^-4	0.565	SYNONYMOUS_CODING nAChRalpha1
3R	15715850	3R_15715850_SNP [dm3] 3R_19890128_SNP [dm6]	A	G	7.094e^-4	0.565	UPSTREAM CG4733 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	11188377	3L_11188377_INS [dm3] 3L_11195277_INS [dm6]	T	TT	7.103e^-4	0.565	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2L	14914130	2L_14914130_SNP [dm3] 2L_14914130_SNP [dm6]	T	C	7.110e^-4	0.565	INTRON CG42313
X	22164250	X_22164250_SNP [dm3] X_22762414_SNP [dm6]	G	C	7.111e^-4	0.565	INTRON CR44997
3R	23055168	3R_23055168_SNP [dm3] 3R_27229446_SNP [dm6]	G	A	7.114e^-4	0.565	UTR_5_PRIME CG42814 UPSTREAM CG42813 DOWNSTREAM CG31064
X	14302826	X_14302826_SNP [dm3] X_14408793_SNP [dm6]	C	T	7.120e^-4	0.565	INTRON dpr8
3R	18420684	3R_18420684_SNP [dm3] 3R_22594962_SNP [dm6]	G	A	7.159e^-4	0.565	INTRON Efa6	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15795943	3R_15795943_SNP [dm3] 3R_19970221_SNP [dm6]	C	T	7.166e^-4	0.565	INTRON Hs6st
3R	22057725	3R_22057725_SNP [dm3] 3R_26232003_SNP [dm6]	A	G	7.177e^-4	0.565	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20750617	2L_20750617_SNP [dm3] 2L_20750617_SNP [dm6]	G	A	7.183e^-4	0.565	UTR_3_PRIME Fs_2_Ket DOWNSTREAM CG9319	TF binding site mE1_TFBS_sens
3R	24395318	3R_24395318_SNP [dm3] 3R_28569596_SNP [dm6]	A	G	7.185e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cnc
3R	16102657	3R_16102657_SNP [dm3] 3R_20276935_SNP [dm6]	A	G	7.215e^-4	0.565	INTRON cic	TF binding site BDTNP1_TFBS_twi
2R	8342370	2R_8342370_DEL [dm3] 2R_12454865_DEL [dm6]	ATGTA	A	7.220e^-4	0.565	INTRON Lac	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19703090	3R_19703090_SNP [dm3] 3R_23877368_SNP [dm6]	A	C	7.224e^-4	0.565	INTRON Pli
2L	3890576	2L_3890576_SNP [dm3] 2L_3890576_SNP [dm6]	T	C	7.226e^-4	0.565	UPSTREAM capu INTRON capu	TF binding site mE1_TFBS_ttk
2L	3890974	2L_3890974_SNP [dm3] 2L_3890974_SNP [dm6]	C	G	7.238e^-4	0.565	UPSTREAM capu INTRON capu
3R	25813082	3R_25813082_SNP [dm3] 3R_29987360_SNP [dm6]	T	C	7.239e^-4	0.565	SYNONYMOUS_CODING CG7896	TF binding site BDTNP1_TFBS_twi
X	3234994	X_3234994_INS [dm3] X_3340961_INS [dm6]	T	TAT	7.250e^-4	0.565	UTR_3_PRIME dnc INTRON CR44886
2L	6359031	2L_6359031_SNP [dm3] 2L_6359031_SNP [dm6]	G	A	7.258e^-4	0.565	UPSTREAM CG9500 EXON CR44777
2L	14673128	2L_14673128_SNP [dm3] 2L_14673128_SNP [dm6]	C	T	7.259e^-4	0.565	INTRON osp
3R	7706131	3R_7706131_SNP [dm3] 3R_11880409_SNP [dm6]	C	T	7.285e^-4	0.565	DOWNSTREAM sad INTRON CG6962	TF binding site mE1_TFBS_cad
3R	8720510	3R_8720510_SNP [dm3] 3R_12894788_SNP [dm6]	A	C	7.288e^-4	0.565	UPSTREAM CR33929 INTERGENIC
2R	11049876	2R_11049876_SNP [dm3] 2R_15162371_SNP [dm6]	A	G	7.300e^-4	0.565	INTRON igl	TF binding site mE1_TFBS_inv
2R	11049887	2R_11049887_SNP [dm3] 2R_15162382_SNP [dm6]	C	T	7.300e^-4	0.565	INTRON igl	TF binding site mE1_TFBS_inv
3L	12148537	3L_12148537_SNP [dm3] 3L_12155437_SNP [dm6]	T	A	7.300e^-4	0.565	INTRON Nrx-IV
2L	6138902	2L_6138902_SNP [dm3] 2L_6138902_SNP [dm6]	G	A	7.304e^-4	0.565	UPSTREAM CG13991 EXON CR44824
2L	6138904	2L_6138904_SNP [dm3] 2L_6138904_SNP [dm6]	T	A	7.304e^-4	0.565	UPSTREAM CG13991 EXON CR44824
2L	6138906	2L_6138906_SNP [dm3] 2L_6138906_SNP [dm6]	G	A	7.304e^-4	0.565	UPSTREAM CG13991 EXON CR44824
2L	15513274	2L_15513274_SNP [dm3] 2L_15513274_SNP [dm6]	A	G	7.307e^-4	0.565	INTERGENIC
3R	16487328	3R_16487328_DEL [dm3] 3R_20661606_DEL [dm6]	CT	C	7.315e^-4	0.565	INTERGENIC
3R	16911913	3R_16911913_SNP [dm3] 3R_21086191_SNP [dm6]	A	G	7.315e^-4	0.565	SYNONYMOUS_CODING RhoGAP93B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
X	19652082	X_19652082_SNP [dm3] X_19758049_SNP [dm6]	C	A	7.319e^-4	0.565	INTRON Pmp70	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	18180846	2L_18180846_SNP [dm3] 2L_18180846_SNP [dm6]	C	A	7.362e^-4	0.565	DOWNSTREAM CG7180 INTRON CG42750
3L	7171766	3L_7171766_SNP [dm3] 3L_7178666_SNP [dm6]	C	A	7.368e^-4	0.565	INTRON Dscam2
3R	25168505	3R_25168505_SNP [dm3] 3R_29342783_SNP [dm6]	T	A	7.379e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_cad
2L	2708023	2L_2708023_SNP [dm3] 2L_2708023_SNP [dm6]	C	A	7.399e^-4	0.565	INTRON CG31690
2L	4333150	2L_4333150_SNP [dm3] 2L_4333150_SNP [dm6]	G	C	7.411e^-4	0.565	UPSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26288096	3R_26288096_SNP [dm3] 3R_30462374_SNP [dm6]	G	A	7.414e^-4	0.565	INTRON CDase	TF binding site BDTNP1_TFBS_da
3R	26339196	3R_26339196_INS [dm3] 3R_30513474_INS [dm6]	C	CGATAGTTTGA...	7.414e^-4	0.565	INTRON CG31524	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26339262	3R_26339262_SNP [dm3] 3R_30513540_SNP [dm6]	A	C	7.414e^-4	0.565	SYNONYMOUS_CODING CG31524	TF binding site mE1_TFBS_sens
3R	26341348	3R_26341348_SNP [dm3] 3R_30515626_SNP [dm6]	G	A	7.414e^-4	0.565	SYNONYMOUS_CODING CG9698
3R	26837330	3R_26837330_SNP [dm3] 3R_31011608_SNP [dm6]	A	T	7.414e^-4	0.565	INTRON 5-HT7
3L	9760503	3L_9760503_SNP [dm3] 3L_9767403_SNP [dm6]	C	G	7.423e^-4	0.565	INTRON CG8177
3L	1564788	3L_1564788_SNP [dm3] 3L_1564788_SNP [dm6]	C	T	7.425e^-4	0.565	UPSTREAM CG12003 INTRON CG7879
2R	17593063	2R_17593063_SNP [dm3] 2R_21705558_SNP [dm6]	A	C	7.426e^-4	0.565	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1
2L	14728275	2L_14728275_SNP [dm3] 2L_14728275_SNP [dm6]	A	T	7.435e^-4	0.565	NON_SYNONYMOUS_CODING CG42685
2L	511531	2L_511531_SNP [dm3] 2L_511531_SNP [dm6]	T	A	7.437e^-4	0.565	INTRON ush	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	18458085	2L_18458085_SNP [dm3] 2L_18458085_SNP [dm6]	T	A	7.455e^-4	0.565	INTRON let-7-C
3L	6985860	3L_6985860_SNP [dm3] 3L_6992760_SNP [dm6]	G	A	7.455e^-4	0.565	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad
2L	20496446	2L_20496446_SNP [dm3] 2L_20496446_SNP [dm6]	C	T	7.460e^-4	0.565	DOWNSTREAM CG34007 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3879182	2L_3879182_SNP [dm3] 2L_3879182_SNP [dm6]	G	A	7.460e^-4	0.565	INTRON capu
2R	12345385	2R_12345385_SNP [dm3] 2R_16457880_SNP [dm6]	T	G	7.460e^-4	0.565	INTERGENIC
2R	17823080	2R_17823080_SNP [dm3] 2R_21935575_SNP [dm6]	T	C	7.460e^-4	0.565	NON_SYNONYMOUS_CODING CG43742 INTRON Fili
2R	17823103	2R_17823103_SNP [dm3] 2R_21935598_SNP [dm6]	A	T	7.460e^-4	0.565	INTRON Fili & 1 other
2R	18588686	2R_18588686_SNP [dm3] 2R_22701181_SNP [dm6]	G	A	7.460e^-4	0.565	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	18588727	2R_18588727_SNP [dm3] 2R_22701222_SNP [dm6]	T	C	7.460e^-4	0.565	UPSTREAM robo DOWNSTREAM CG30259 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2R	20409247	2R_20409247_SNP [dm3] 2R_24521724_SNP [dm6]	T	A	7.460e^-4	0.565	DOWNSTREAM CG4612 & 1 other EXON Ir60f	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5412399	2R_5412399_SNP [dm3] 2R_9524894_SNP [dm6]	G	A	7.460e^-4	0.565	INTRON brp
3L	7141077	3L_7141077_SNP [dm3] 3L_7147977_SNP [dm6]	G	A	7.460e^-4	0.565	INTRON corn	TF binding site mE1_TFBS_cad
3L	7141078	3L_7141078_SNP [dm3] 3L_7147978_SNP [dm6]	A	T	7.460e^-4	0.565	INTRON corn	TF binding site mE1_TFBS_cad
3L	9180050	3L_9180050_SNP [dm3] 3L_9186950_SNP [dm6]	C	T	7.460e^-4	0.565	INTERGENIC
3L	9183704	3L_9183704_SNP [dm3] 3L_9190604_SNP [dm6]	G	A	7.460e^-4	0.565	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9184521	3L_9184521_DEL [dm3] 3L_9191421_DEL [dm6]	TATTCATCATACTT...	C	7.460e^-4	0.565	INTERGENIC
3L	9184541	3L_9184541_SNP [dm3] 3L_9191441_SNP [dm6]	A	T	7.460e^-4	0.565	INTERGENIC
3R	20923883	3R_20923883_SNP [dm3] 3R_25098161_SNP [dm6]	C	T	7.460e^-4	0.565	SYNONYMOUS_CODING CG33096 UTR_5_PRIME CG33095	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	13277308	X_13277308_SNP [dm3] X_13383275_SNP [dm6]	G	A	7.460e^-4	0.565	SYNONYMOUS_CODING Rbp1-like INTRON Rbp1-like	TF binding site BDTNP1_TFBS_dl
X	13277317	X_13277317_SNP [dm3] X_13383284_SNP [dm6]	G	A	7.460e^-4	0.565	SYNONYMOUS_CODING Rbp1-like INTRON Rbp1-like	TF binding site BDTNP1_TFBS_dl
3L	15305869	3L_15305869_SNP [dm3] 3L_15312769_SNP [dm6]	T	C	7.466e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	3600669	2R_3600669_SNP [dm3] 2R_7713164_SNP [dm6]	G	A	7.471e^-4	0.565	SYNONYMOUS_CODING CG1942	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25846959	3R_25846959_SNP [dm3] 3R_30021237_SNP [dm6]	A	G	7.471e^-4	0.565	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25846962	3R_25846962_SNP [dm3] 3R_30021240_SNP [dm6]	G	C	7.471e^-4	0.565	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25847001	3R_25847001_SNP [dm3] 3R_30021279_SNP [dm6]	T	A	7.471e^-4	0.565	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
3R	25847049	3R_25847049_SNP [dm3] 3R_30021327_SNP [dm6]	A	T	7.471e^-4	0.565	INTRON Mgat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv
2L	14320056	2L_14320056_SNP [dm3] 2L_14320056_SNP [dm6]	A	T	7.483e^-4	0.565	SYNONYMOUS_CODING wb	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22741211	3R_22741211_SNP [dm3] 3R_26915489_SNP [dm6]	T	A	7.486e^-4	0.565	UPSTREAM sda INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13841775	2L_13841775_SNP [dm3] 2L_13841775_SNP [dm6]	C	A	7.509e^-4	0.565	UPSTREAM CG33307 INTRON CenG1A	TF binding site mE1_TFBS_bab1
3R	26167657	3R_26167657_SNP [dm3] 3R_30341935_SNP [dm6]	G	A	7.526e^-4	0.565	INTRON hdc
2R	18320760	2R_18320760_SNP [dm3] 2R_22433255_SNP [dm6]	G	A	7.538e^-4	0.565	INTERGENIC
3R	16224081	3R_16224081_SNP [dm3] 3R_20398359_SNP [dm6]	T	A	7.540e^-4	0.565	INTRON Gfrl
2R	17369120	2R_17369120_SNP [dm3] 2R_21481615_SNP [dm6]	C	G	7.541e^-4	0.565	UPSTREAM Sara & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	18185165	2L_18185165_SNP [dm3] 2L_18185165_SNP [dm6]	A	C	7.559e^-4	0.565	UPSTREAM CG7180 INTRON CG42750 EXON CR44900	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	837496	3L_837496_SNP [dm3] 3L_837496_SNP [dm6]	G	A	7.563e^-4	0.565	UTR_5_PRIME CG13901 UPSTREAM CG13887 DOWNSTREAM CG42554	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.692e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1105 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	2684201	3L_2684201_SNP [dm3] 3L_2684201_SNP [dm6]	A	C	3.886e^-7	0.709	INTRON Fife
3R	16069900	3R_16069900_SNP [dm3] 3R_20244178_SNP [dm6]	T	C	2.186e^-6	0.956	UTR_3_PRIME Nlg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
X	11768740	X_11768740_SNP [dm3] X_11874707_SNP [dm6]	C	T	8.580e^-6	0.956	SYNONYMOUS_CODING CG15739 DOWNSTREAM CG10352	TF binding site mE1_TFBS_chinmo
2R	6711699	2R_6711699_SNP [dm3] 2R_10824194_SNP [dm6]	A	C	9.092e^-6	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6711738	2R_6711738_SNP [dm3] 2R_10824233_SNP [dm6]	A	C	9.092e^-6	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	24604136	3R_24604136_SNP [dm3] 3R_28778414_SNP [dm6]	A	C	1.315e^-5	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24604137	3R_24604137_SNP [dm3] 3R_28778415_SNP [dm6]	C	T	1.315e^-5	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25904664	3R_25904664_SNP [dm3] 3R_30078942_SNP [dm6]	A	G	1.471e^-5	0.956	INTRON sima
3R	20401042	3R_20401042_SNP [dm3] 3R_24575320_SNP [dm6]	C	T	1.585e^-5	0.956	INTRON CG13624
X	5834307	X_5834307_SNP [dm3] X_5940274_SNP [dm6]	C	G	2.245e^-5	0.956	NON_SYNONYMOUS_CODING CG3726
3L	6644575	3L_6644575_SNP [dm3] 3L_6651475_SNP [dm6]	A	T	2.414e^-5	0.956	INTERGENIC
3L	9702424	3L_9702424_SNP [dm3] 3L_9709324_SNP [dm6]	C	T	2.445e^-5	0.956	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3L	16545941	3L_16545941_SNP [dm3] 3L_16552841_SNP [dm6]	T	G	2.924e^-5	0.956	INTERGENIC
3L	6644931	3L_6644931_SNP [dm3] 3L_6651831_SNP [dm6]	C	T	2.962e^-5	0.956	INTERGENIC
X	5834327	X_5834327_SNP [dm3] X_5940294_SNP [dm6]	C	T	2.962e^-5	0.956	SYNONYMOUS_CODING CG3726
3L	16546012	3L_16546012_SNP [dm3] 3L_16552912_SNP [dm6]	T	G	2.967e^-5	0.956	INTERGENIC
4	419045	4_419045_SNP [dm3] 4_398419_SNP [dm6]	C	A	3.072e^-5	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21896817	X_21896817_SNP [dm3] X_22494981_SNP [dm6]	G	C	3.207e^-5	0.956	INTRON l_1_G0196	transposable element FlyBase
3R	14666990	3R_14666990_SNP [dm3] 3R_18841268_SNP [dm6]	A	G	3.315e^-5	0.956	INTRON CG18208
2L	21882765	2L_21882765_SNP [dm3] 2L_21882765_SNP [dm6]	A	G	3.574e^-5	0.956	INTERGENIC
X	14325003	X_14325003_INS [dm3] X_14430970_INS [dm6]	T	TAGGTAACT	3.597e^-5	0.956	INTRON dpr8
2R	6711123	2R_6711123_SNP [dm3] 2R_10823618_SNP [dm6]	C	T	3.916e^-5	0.956	UTR_5_PRIME CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6711196	2R_6711196_SNP [dm3] 2R_10823691_SNP [dm6]	C	A	3.916e^-5	0.956	UTR_5_PRIME CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	21882791	2L_21882791_SNP [dm3] 2L_21882791_SNP [dm6]	G	C	3.969e^-5	0.956	INTERGENIC
2R	6593277	2R_6593277_SNP [dm3] 2R_10705772_SNP [dm6]	C	A	4.100e^-5	0.956	UPSTREAM stan INTRON stan
3R	10605045	3R_10605045_SNP [dm3] 3R_14779323_SNP [dm6]	T	G	4.234e^-5	0.956	INTRON jvl
3R	24601275	3R_24601275_SNP [dm3] 3R_28775553_SNP [dm6]	A	T	4.925e^-5	0.956	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	16251717	3L_16251717_SNP [dm3] 3L_16258617_SNP [dm6]	A	C	5.290e^-5	0.956	DOWNSTREAM CG13053 INTERGENIC
X	13198539	X_13198539_SNP [dm3] X_13304506_SNP [dm6]	C	T	5.803e^-5	0.956	UPSTREAM CR45018 INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12410773	2R_12410773_SNP [dm3] 2R_16523268_SNP [dm6]	C	T	5.832e^-5	0.956	INTRON Sema-2a
3L	2462227	3L_2462227_SNP [dm3] 3L_2462227_SNP [dm6]	T	C	5.999e^-5	0.956	UPSTREAM CG45186 INTRON CG45186
3R	14661693	3R_14661693_SNP [dm3] 3R_18835971_SNP [dm6]	A	C	6.064e^-5	0.956	INTRON CG18208
3R	17061668	3R_17061668_SNP [dm3] 3R_21235946_SNP [dm6]	G	A	6.343e^-5	0.956	INTRON e	regulatory region REDfly_CRMs
2R	18346037	2R_18346037_SNP [dm3] 2R_22458532_SNP [dm6]	T	A	6.345e^-5	0.956	INTRON CG10384
2L	4934800	2L_4934800_SNP [dm3] 2L_4934800_SNP [dm6]	T	G	6.476e^-5	0.956	INTRON hoe2
2L	4934808	2L_4934808_SNP [dm3] 2L_4934808_SNP [dm6]	A	G	6.476e^-5	0.956	INTRON hoe2
2R	16540011	2R_16540011_SNP [dm3] 2R_20652506_SNP [dm6]	T	G	6.505e^-5	0.956	DOWNSTREAM CG16799 INTRON Lrt	TF binding site BDTNP1_TFBS_da mE1_TFBS_inv
X	9414903	X_9414903_SNP [dm3] X_9520870_SNP [dm6]	A	T	6.533e^-5	0.956	INTRON CG32700
3R	24604931	3R_24604931_SNP [dm3] 3R_28779209_SNP [dm6]	A	T	6.666e^-5	0.956	INTERGENIC
3L	16539277	3L_16539277_SNP [dm3] 3L_16546177_SNP [dm6]	T	C	6.718e^-5	0.956	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	22318452	3L_22318452_SNP [dm3] 3L_22325352_SNP [dm6]	C	T	6.983e^-5	0.956	INTRON Ten-m	TF binding site mE1_TFBS_inv
3L	12146135	3L_12146135_SNP [dm3] 3L_12153035_SNP [dm6]	C	T	7.104e^-5	0.956	SYNONYMOUS_CODING Nrx-IV	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6650578	3L_6650578_SNP [dm3] 3L_6657478_SNP [dm6]	A	G	7.142e^-5	0.956	INTERGENIC
3R	26585208	3R_26585208_SNP [dm3] 3R_30759486_SNP [dm6]	G	C	7.244e^-5	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
X	19301541	X_19301541_SNP [dm3] X_19407508_SNP [dm6]	T	C	7.433e^-5	0.956	INTRON kek5
3L	1040117	3L_1040117_SNP [dm3] 3L_1040117_SNP [dm6]	C	G	7.575e^-5	0.956	SYNONYMOUS_CODING bab1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	17713026	3R_17713026_SNP [dm3] 3R_21887304_SNP [dm6]	C	T	7.923e^-5	0.956	UTR_5_PRIME CG6678 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	21896819	X_21896819_SNP [dm3] X_22494983_SNP [dm6]	T	C	8.010e^-5	0.956	INTRON l_1_G0196	transposable element FlyBase
2R	17289239	2R_17289239_SNP [dm3] 2R_21401734_SNP [dm6]	A	G	8.141e^-5	0.956	INTRON Sdc	TF binding site mE1_TFBS_cad
3R	25646207	3R_25646207_SNP [dm3] 3R_29820485_SNP [dm6]	A	T	8.293e^-5	0.956	INTRON neo
3R	14615557	3R_14615557_SNP [dm3] 3R_18789835_SNP [dm6]	A	G	8.475e^-5	0.956	INTRON CG7720	TF binding site mE1_TFBS_inv
3R	21462352	3R_21462352_SNP [dm3] 3R_25636630_SNP [dm6]	T	C	8.487e^-5	0.956	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7550870	3L_7550870_SNP [dm3] 3L_7557770_SNP [dm6]	A	T	8.537e^-5	0.956	INTRON CG14837
X	5882478	X_5882478_SNP [dm3] X_5988445_SNP [dm6]	C	T	8.879e^-5	0.956	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	24604144	3R_24604144_SNP [dm3] 3R_28778422_SNP [dm6]	G	T	8.908e^-5	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5354144	3L_5354144_SNP [dm3] 3L_5361044_SNP [dm6]	G	A	9.064e^-5	0.956	INTRON CG4769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2683676	3L_2683676_SNP [dm3] 3L_2683676_SNP [dm6]	A	G	9.203e^-5	0.956	INTRON Fife
3L	15839366	3L_15839366_DEL [dm3] 3L_15846266_DEL [dm6]	CTAC	C	9.759e^-5	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	18619065	3R_18619065_DEL [dm3] 3R_22793343_DEL [dm6]	AA	A	9.798e^-5	0.956	UTR_3_PRIME CG7029	TF binding site mE1_TFBS_bab1
2R	5095791	2R_5095791_SNP [dm3] 2R_9208286_SNP [dm6]	C	A	9.828e^-5	0.956	SYNONYMOUS_CODING VhaAC45	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	17667546	2L_17667546_SNP [dm3] 2L_17667546_SNP [dm6]	C	T	9.893e^-5	0.956	INTRON CadN
3L	4516517	3L_4516517_SNP [dm3] 3L_4516517_SNP [dm6]	G	A	9.963e^-5	0.956	INTRON Tie	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5354167	3L_5354167_SNP [dm3] 3L_5361067_SNP [dm6]	A	T	9.989e^-5	0.956	INTRON CG4769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2329869	3L_2329869_SNP [dm3] 3L_2329869_SNP [dm6]	C	A	9.995e^-5	0.956	INTRON MsR1
3R	24604876	3R_24604876_SNP [dm3] 3R_28779154_SNP [dm6]	G	A	1.023e^-4	0.956	INTERGENIC
2R	6711216	2R_6711216_SNP [dm3] 2R_10823711_SNP [dm6]	C	T	1.035e^-4	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
2L	1008996	2L_1008996_SNP [dm3] 2L_1008996_SNP [dm6]	G	A	1.042e^-4	0.956	UTR_3_PRIME IA-2
3R	5084284	3R_5084284_SNP [dm3] 3R_9258562_SNP [dm6]	T	C	1.059e^-4	0.956	UPSTREAM CG16736 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6948113	3L_6948113_SNP [dm3] 3L_6955013_SNP [dm6]	T	C	1.068e^-4	0.956	SYNONYMOUS_CODING CG10077 UPSTREAM CG9948	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
X	12089960	X_12089960_SNP [dm3] X_12195927_SNP [dm6]	C	G	1.070e^-4	0.956	NON_SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9502736	3R_9502736_SNP [dm3] 3R_13677014_SNP [dm6]	A	C	1.073e^-4	0.956	SPLICE_SITE_ACCEPTOR lkb1 SPLICE_SITE_REGION lkb1 UPSTREAM CG9588 INTRON lkb1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
X	10091136	X_10091136_SNP [dm3] X_10197103_SNP [dm6]	G	T	1.088e^-4	0.956	INTRON CR44894
2R	6711543	2R_6711543_SNP [dm3] 2R_10824038_SNP [dm6]	T	G	1.092e^-4	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	7927287	3R_7927287_SNP [dm3] 3R_12101565_SNP [dm6]	T	C	1.120e^-4	0.956	INTRON dpr17
3L	5354163	3L_5354163_SNP [dm3] 3L_5361063_SNP [dm6]	G	A	1.132e^-4	0.956	INTRON CG4769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12365678	2R_12365678_DEL [dm3] 2R_16478173_DEL [dm6]	GG	G	1.145e^-4	0.956	INTERGENIC
3L	1862565	3L_1862565_SNP [dm3] 3L_1862565_SNP [dm6]	A	G	1.149e^-4	0.956	UPSTREAM R DOWNSTREAM HBS1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	9700402	3L_9700402_SNP [dm3] 3L_9707302_SNP [dm6]	T	G	1.170e^-4	0.956	NON_SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9758411	3L_9758411_SNP [dm3] 3L_9765311_SNP [dm6]	C	T	1.188e^-4	0.956	INTRON CG8177
3R	24604883	3R_24604883_SNP [dm3] 3R_28779161_SNP [dm6]	G	A	1.198e^-4	0.956	INTERGENIC
3L	1390720	3L_1390720_SNP [dm3] 3L_1390720_SNP [dm6]	G	T	1.201e^-4	0.956	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11178655	3R_11178655_SNP [dm3] 3R_15352933_SNP [dm6]	A	T	1.216e^-4	0.956	NON_SYNONYMOUS_CODING CG5038 DOWNSTREAM Atg4b	TF binding site mE1_TFBS_sens
3L	2436313	3L_2436313_SNP [dm3] 3L_2436313_SNP [dm6]	G	T	1.217e^-4	0.956	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7771177	2L_7771177_INS [dm3] 2L_7771177_INS [dm6]	G	GG	1.220e^-4	0.956	INTRON CG7191
3R	17313649	3R_17313649_SNP [dm3] 3R_21487927_SNP [dm6]	G	A	1.230e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	17314258	3R_17314258_DEL [dm3] 3R_21488536_DEL [dm6]	AA	T	1.230e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17314519	3R_17314519_SNP [dm3] 3R_21488797_SNP [dm6]	T	A	1.230e^-4	0.956	INTERGENIC
X	11950376	X_11950376_SNP [dm3] X_12056343_SNP [dm6]	G	A	1.245e^-4	0.956	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
3L	1860894	3L_1860894_SNP [dm3] 3L_1860894_SNP [dm6]	C	T	1.254e^-4	0.956	SYNONYMOUS_CODING R	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	14121139	3R_14121139_SNP [dm3] 3R_18295417_SNP [dm6]	A	G	1.266e^-4	0.956	UPSTREAM l_3_05822 INTRON l_3_05822
3R	21655683	3R_21655683_SNP [dm3] 3R_25829961_SNP [dm6]	T	C	1.309e^-4	0.956	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3L	13246911	3L_13246911_SNP [dm3] 3L_13253811_SNP [dm6]	C	G	1.318e^-4	0.956	INTRON caps	TF binding site mE1_TFBS_inv
3R	23195370	3R_23195370_SNP [dm3] 3R_27369648_SNP [dm6]	A	C	1.320e^-4	0.956	INTRON CG42534 EXON CR43476
3R	25308965	3R_25308965_SNP [dm3] 3R_29483243_SNP [dm6]	C	T	1.328e^-4	0.956	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11767477	X_11767477_SNP [dm3] X_11873444_SNP [dm6]	G	T	1.345e^-4	0.956	UTR_5_PRIME CG15739 UPSTREAM CG11802
3R	25646258	3R_25646258_SNP [dm3] 3R_29820536_SNP [dm6]	T	C	1.348e^-4	0.956	INTRON neo
3R	25646265	3R_25646265_SNP [dm3] 3R_29820543_SNP [dm6]	C	T	1.348e^-4	0.956	INTRON neo
3R	25646277	3R_25646277_SNP [dm3] 3R_29820555_SNP [dm6]	T	C	1.348e^-4	0.956	INTRON neo
3R	25646287	3R_25646287_SNP [dm3] 3R_29820565_SNP [dm6]	C	T	1.348e^-4	0.956	INTRON neo
3L	7205428	3L_7205428_INS [dm3] 3L_7212328_INS [dm6]	C	CT	1.370e^-4	0.956	INTERGENIC
3L	12928840	3L_12928840_SNP [dm3] 3L_12935740_SNP [dm6]	T	G	1.373e^-4	0.956	INTERGENIC
3R	12024957	3R_12024957_SNP [dm3] 3R_16199235_SNP [dm6]	C	A	1.374e^-4	0.956	INTRON CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12024960	3R_12024960_SNP [dm3] 3R_16199238_SNP [dm6]	A	G	1.374e^-4	0.956	INTRON CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20773100	3R_20773100_SNP [dm3] 3R_24947378_SNP [dm6]	G	T	1.394e^-4	0.956	UTR_3_PRIME Nmnat UPSTREAM CG13646 DOWNSTREAM Nmnat
3L	8805814	3L_8805814_SNP [dm3] 3L_8812714_SNP [dm6]	C	T	1.400e^-4	0.956	INTERGENIC
3L	3478228	3L_3478228_SNP [dm3] 3L_3478228_SNP [dm6]	G	T	1.400e^-4	0.956	INTRON CG42324
X	3484446	X_3484446_SNP [dm3] X_3590413_SNP [dm6]	G	T	1.412e^-4	0.956	INTRON AstA-R1	TF binding site mE1_TFBS_inv
3R	5826324	3R_5826324_SNP [dm3] 3R_10000602_SNP [dm6]	A	T	1.439e^-4	0.956	UTR_3_PRIME CG5359 DOWNSTREAM Spn85F & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
X	5882484	X_5882484_SNP [dm3] X_5988451_SNP [dm6]	A	G	1.446e^-4	0.956	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	12889449	3R_12889449_SNP [dm3] 3R_17063727_SNP [dm6]	T	C	1.463e^-4	0.956	INTRON Dad
3L	7550928	3L_7550928_SNP [dm3] 3L_7557828_SNP [dm6]	T	C	1.507e^-4	0.956	INTRON CG14837
3R	25646289	3R_25646289_SNP [dm3] 3R_29820567_SNP [dm6]	T	C	1.511e^-4	0.956	INTRON neo
3R	24602934	3R_24602934_SNP [dm3] 3R_28777212_SNP [dm6]	C	T	1.516e^-4	0.956	EXON CR44952
X	10287826	X_10287826_SNP [dm3] X_10393793_SNP [dm6]	C	T	1.517e^-4	0.956	INTRON flw
2R	16242316	2R_16242316_SNP [dm3] 2R_20354811_SNP [dm6]	C	A	1.518e^-4	0.956	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9468754	X_9468754_SNP [dm3] X_9574721_SNP [dm6]	T	C	1.519e^-4	0.956	SYNONYMOUS_CODING CG32699 DOWNSTREAM CG42395	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21253637	3R_21253637_SNP [dm3] 3R_25427915_SNP [dm6]	T	A	1.550e^-4	0.956	INTRON Fur1
3L	2447427	3L_2447427_SNP [dm3] 3L_2447427_SNP [dm6]	C	A	1.555e^-4	0.956	INTRON CG45186	TF binding site BDTNP1_TFBS_dl
3R	13093631	3R_13093631_SNP [dm3] 3R_17267909_SNP [dm6]	T	A	1.557e^-4	0.956	INTERGENIC
3R	5717949	3R_5717949_SNP [dm3] 3R_9892227_SNP [dm6]	T	C	1.580e^-4	0.956	INTRON Glut4EF
2L	16567786	2L_16567786_SNP [dm3] 2L_16567786_SNP [dm6]	A	T	1.599e^-4	0.956	INTRON CG42389
2L	16567787	2L_16567787_SNP [dm3] 2L_16567787_SNP [dm6]	T	A	1.599e^-4	0.956	INTRON CG42389
3R	5736347	3R_5736347_SNP [dm3] 3R_9910625_SNP [dm6]	A	C	1.607e^-4	0.956	INTRON Glut4EF
3R	14616450	3R_14616450_SNP [dm3] 3R_18790728_SNP [dm6]	A	G	1.613e^-4	0.956	INTRON CG7720
3R	14616540	3R_14616540_SNP [dm3] 3R_18790818_SNP [dm6]	G	T	1.613e^-4	0.956	INTRON CG7720
3R	14616571	3R_14616571_SNP [dm3] 3R_18790849_SNP [dm6]	T	C	1.613e^-4	0.956	INTRON CG7720
3R	14616573	3R_14616573_SNP [dm3] 3R_18790851_SNP [dm6]	C	A	1.613e^-4	0.956	INTRON CG7720
X	3808745	X_3808745_SNP [dm3] X_3914712_SNP [dm6]	A	T	1.623e^-4	0.956	INTRON CG42541
3L	22534174	3L_22534174_SNP [dm3] 3L_22541074_SNP [dm6]	A	G	1.631e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	12094967	X_12094967_SNP [dm3] X_12200934_SNP [dm6]	A	C	1.631e^-4	0.956	INTRON Ten-a
3R	17313546	3R_17313546_SNP [dm3] 3R_21487824_SNP [dm6]	T	G	1.651e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	16896431	3L_16896431_SNP [dm3] 3L_16903331_SNP [dm6]	G	T	1.653e^-4	0.956	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	18280343	3R_18280343_SNP [dm3] 3R_22454621_SNP [dm6]	A	G	1.660e^-4	0.956	INTRON CG34376	TF binding site mE1_TFBS_cad
3R	26386046	3R_26386046_SNP [dm3] 3R_30560324_SNP [dm6]	C	G	1.677e^-4	0.956	UPSTREAM CG34155 INTRON tmod	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	12636032	2R_12636032_SNP [dm3] 2R_16748527_SNP [dm6]	G	T	1.697e^-4	0.956	SYNONYMOUS_CODING Acp53C14a DOWNSTREAM Acp53C14b
X	14088507	X_14088507_SNP [dm3] X_14194474_SNP [dm6]	A	C	1.697e^-4	0.956	INTRON yl	TF binding site BDTNP1_TFBS_prd mE1_TFBS_chinmo
2R	17837430	2R_17837430_SNP [dm3] 2R_21949925_SNP [dm6]	A	G	1.705e^-4	0.956	INTERGENIC
3L	18131873	3L_18131873_SNP [dm3] 3L_18138773_SNP [dm6]	A	T	1.706e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131880	3L_18131880_SNP [dm3] 3L_18138780_SNP [dm6]	A	G	1.706e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	17506963	3R_17506963_SNP [dm3] 3R_21681241_SNP [dm6]	A	C	1.726e^-4	0.956	INTRON CG31176
2R	20510806	2R_20510806_SNP [dm3] 2R_24623283_SNP [dm6]	A	C	1.739e^-4	0.956	INTRON CG13594
2R	12317014	2R_12317014_SNP [dm3] 2R_16429509_SNP [dm6]	G	C	1.742e^-4	0.956	INTRON Sema-2b
3L	19526138	3L_19526138_SNP [dm3] 3L_19533038_SNP [dm6]	C	A	1.756e^-4	0.956	UTR_5_PRIME Cpr76Bd
3R	21677068	3R_21677068_SNP [dm3] 3R_25851346_SNP [dm6]	T	C	1.759e^-4	0.956	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	25399875	3R_25399875_SNP [dm3] 3R_29574153_SNP [dm6]	T	A	1.761e^-4	0.956	INTERGENIC
2L	682918	2L_682918_DEL [dm3] 2L_682918_DEL [dm6]	GG	G	1.761e^-4	0.956	INTRON ds	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9468778	X_9468778_SNP [dm3] X_9574745_SNP [dm6]	T	A	1.770e^-4	0.956	SYNONYMOUS_CODING CG32699 DOWNSTREAM CG42395	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	21246176	3R_21246176_SNP [dm3] 3R_25420454_SNP [dm6]	G	T	1.786e^-4	0.956	INTRON Fur1
X	8402844	X_8402844_SNP [dm3] X_8508811_SNP [dm6]	G	C	1.788e^-4	0.956	UPSTREAM CG33181 INTRON CG33181
X	8402857	X_8402857_SNP [dm3] X_8508824_SNP [dm6]	T	A	1.788e^-4	0.956	UPSTREAM CG33181 INTRON CG33181
3L	2673749	3L_2673749_SNP [dm3] 3L_2673749_SNP [dm6]	A	G	1.798e^-4	0.956	INTRON Fife
3R	5045936	3R_5045936_SNP [dm3] 3R_9220214_SNP [dm6]	A	T	1.798e^-4	0.956	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	13257060	X_13257060_SNP [dm3] X_13363027_SNP [dm6]	A	G	1.821e^-4	0.956	INTRON Syt12
3L	10928356	3L_10928356_INS [dm3] 3L_10935256_INS [dm6]	A	AA	1.834e^-4	0.956	INTERGENIC
2L	6692537	2L_6692537_SNP [dm3] 2L_6692537_SNP [dm6]	A	T	1.871e^-4	0.956	INTRON Tsp	TF binding site mE1_TFBS_chinmo
2R	10383958	2R_10383958_SNP [dm3] 2R_14496453_SNP [dm6]	A	C	1.880e^-4	0.956	SYNONYMOUS_CODING L DOWNSTREAM Cpsf160	TF binding site mE1_TFBS_cad
X	3801716	X_3801716_SNP [dm3] X_3907683_SNP [dm6]	T	C	1.915e^-4	0.956	INTRON CG42541
3R	15082479	3R_15082479_SNP [dm3] 3R_19256757_SNP [dm6]	A	C	1.926e^-4	0.956	UPSTREAM CG14280 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7733751	3L_7733751_DEL [dm3] 3L_7740651_DEL [dm6]	TA	T	1.928e^-4	0.956	INTRON CG32373 & 1 other
2R	14780817	2R_14780817_SNP [dm3] 2R_18893312_SNP [dm6]	A	G	1.940e^-4	0.956	INTRON sano
2R	11018725	2R_11018725_SNP [dm3] 2R_15131220_SNP [dm6]	T	G	1.967e^-4	0.956	INTRON chn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	1103352	3L_1103352_INS [dm3] 3L_1103352_INS [dm6]	T	TGTAT	1.977e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	7550877	3L_7550877_SNP [dm3] 3L_7557777_SNP [dm6]	T	A	1.986e^-4	0.956	INTRON CG14837
3R	14616483	3R_14616483_SNP [dm3] 3R_18790761_SNP [dm6]	T	C	2.009e^-4	0.956	INTRON CG7720
3L	2433608	3L_2433608_SNP [dm3] 3L_2433608_SNP [dm6]	C	T	2.020e^-4	0.956	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22332373	3L_22332373_SNP [dm3] 3L_22339273_SNP [dm6]	C	T	2.020e^-4	0.956	INTRON Ten-m	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2684779	3L_2684779_SNP [dm3] 3L_2684779_SNP [dm6]	T	G	2.032e^-4	0.956	INTRON Fife
X	19042418	X_19042418_INS [dm3] X_19148385_INS [dm6]	A	AA	2.036e^-4	0.956	INTRON RhoGAP18B	TF binding site mE1_TFBS_inv
2R	19113012	2R_19113012_SNP [dm3] 2R_23225489_SNP [dm6]	A	T	2.041e^-4	0.956	INTERGENIC
3R	24604823	3R_24604823_SNP [dm3] 3R_28779101_SNP [dm6]	G	A	2.055e^-4	0.956	INTERGENIC
3L	16546005	3L_16546005_SNP [dm3] 3L_16552905_SNP [dm6]	G	A	2.064e^-4	0.956	INTERGENIC
2R	14782527	2R_14782527_SNP [dm3] 2R_18895022_SNP [dm6]	T	A	2.065e^-4	0.956	INTRON sano
2L	5259938	2L_5259938_INS [dm3] 2L_5259938_INS [dm6]	A	AA	2.095e^-4	0.956	DOWNSTREAM CR44744 INTRON tkv EXON CR44744
2L	5259946	2L_5259946_SNP [dm3] 2L_5259946_SNP [dm6]	C	T	2.095e^-4	0.956	DOWNSTREAM CR44744 INTRON tkv EXON CR44744
2L	5259960	2L_5259960_SNP [dm3] 2L_5259960_SNP [dm6]	T	C	2.095e^-4	0.956	DOWNSTREAM CR44744 INTRON tkv EXON CR44744
3L	7489870	3L_7489870_SNP [dm3] 3L_7496770_SNP [dm6]	G	A	2.112e^-4	0.956	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
3R	13146213	3R_13146213_SNP [dm3] 3R_17320491_SNP [dm6]	C	A	2.125e^-4	0.956	UTR_3_PRIME beat-IIa
3R	13146217	3R_13146217_SNP [dm3] 3R_17320495_SNP [dm6]	A	G	2.125e^-4	0.956	UTR_3_PRIME beat-IIa
3R	17032030	3R_17032030_SNP [dm3] 3R_21206308_SNP [dm6]	C	T	2.126e^-4	0.956	INTRON SNF4Agamma	TF binding site mE1_TFBS_Trl
3R	20486896	3R_20486896_SNP [dm3] 3R_24661174_SNP [dm6]	C	T	2.137e^-4	0.956	SYNONYMOUS_CODING Ppox DOWNSTREAM CG31126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	15922565	3R_15922565_SNP [dm3] 3R_20096843_SNP [dm6]	C	G	2.153e^-4	0.956	INTERGENIC
3L	12637609	3L_12637609_SNP [dm3] 3L_12644509_SNP [dm6]	C	T	2.158e^-4	0.956	INTRON CR32111	regulatory region REDfly_CRMs
3L	1430741	3L_1430741_INS [dm3] 3L_1430741_INS [dm6]	T	TC	2.166e^-4	0.956	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5843797	X_5843797_SNP [dm3] X_5949764_SNP [dm6]	G	T	2.181e^-4	0.956	SYNONYMOUS_CODING CG6041 UPSTREAM CG32755
X	19239606	X_19239606_SNP [dm3] X_19345573_SNP [dm6]	T	A	2.215e^-4	0.956	INTRON nAChRalpha7
2R	16242199	2R_16242199_SNP [dm3] 2R_20354694_SNP [dm6]	C	T	2.221e^-4	0.956	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21253638	3R_21253638_SNP [dm3] 3R_25427916_SNP [dm6]	C	T	2.229e^-4	0.956	INTRON Fur1
2L	10452573	2L_10452573_SNP [dm3] 2L_10452573_SNP [dm6]	C	A	2.240e^-4	0.956	UPSTREAM ppk10 DOWNSTREAM CG5322 INTERGENIC
3L	2376431	3L_2376431_SNP [dm3] 3L_2376431_SNP [dm6]	G	A	2.245e^-4	0.956	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3L	2376457	3L_2376457_SNP [dm3] 3L_2376457_SNP [dm6]	T	A	2.245e^-4	0.956	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
2R	18154372	2R_18154372_SNP [dm3] 2R_22266867_SNP [dm6]	C	A	2.253e^-4	0.956	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	5259943	2L_5259943_SNP [dm3] 2L_5259943_SNP [dm6]	C	A	2.256e^-4	0.956	DOWNSTREAM CR44744 INTRON tkv EXON CR44744
3L	16896428	3L_16896428_SNP [dm3] 3L_16903328_SNP [dm6]	T	G	2.260e^-4	0.956	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	14616588	3R_14616588_SNP [dm3] 3R_18790866_SNP [dm6]	T	C	2.263e^-4	0.956	INTRON CG7720
3L	4088615	3L_4088615_SNP [dm3] 3L_4088615_SNP [dm6]	A	C	2.287e^-4	0.956	UTR_5_PRIME Gad1 UPSTREAM CG14989 & 1 other INTRON CG14989
X	5434074	X_5434074_SNP [dm3] X_5540041_SNP [dm6]	C	G	2.288e^-4	0.956	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	736072	3L_736072_SNP [dm3] 3L_736072_SNP [dm6]	T	G	2.327e^-4	0.956	DOWNSTREAM CR43785 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	17313561	3R_17313561_SNP [dm3] 3R_21487839_SNP [dm6]	A	C	2.338e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	14616583	3R_14616583_SNP [dm3] 3R_18790861_SNP [dm6]	G	T	2.338e^-4	0.956	INTRON CG7720
3L	704574	3L_704574_SNP [dm3] 3L_704574_SNP [dm6]	T	A	2.345e^-4	0.956	UPSTREAM CR44514 INTERGENIC
3R	17506871	3R_17506871_SNP [dm3] 3R_21681149_SNP [dm6]	C	T	2.351e^-4	0.956	INTRON CG31176
3R	17507035	3R_17507035_SNP [dm3] 3R_21681313_SNP [dm6]	A	G	2.351e^-4	0.956	INTRON CG31176
3L	7176837	3L_7176837_SNP [dm3] 3L_7183737_SNP [dm6]	G	A	2.369e^-4	0.956	SYNONYMOUS_CODING Dscam2	TF binding site BDTNP1_TFBS_twi
3L	7416752	3L_7416752_SNP [dm3] 3L_7423652_SNP [dm6]	C	G	2.369e^-4	0.956	UPSTREAM CG42458 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16896425	3L_16896425_SNP [dm3] 3L_16903325_SNP [dm6]	C	A	2.377e^-4	0.956	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3L	428958	3L_428958_SNP [dm3] 3L_428958_SNP [dm6]	A	G	2.378e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	24604147	3R_24604147_SNP [dm3] 3R_28778425_SNP [dm6]	G	T	2.392e^-4	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14879599	3R_14879599_SNP [dm3] 3R_19053877_SNP [dm6]	G	A	2.393e^-4	0.956	INTRON cdi
3L	18131847	3L_18131847_SNP [dm3] 3L_18138747_SNP [dm6]	T	G	2.414e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12365681	2R_12365681_SNP [dm3] 2R_16478176_SNP [dm6]	C	G	2.420e^-4	0.956	INTERGENIC
3L	3248839	3L_3248839_SNP [dm3] 3L_3248839_SNP [dm6]	C	A	2.422e^-4	0.956	UTR_3_PRIME CG43389 UPSTREAM CR43626	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	6512132	2L_6512132_SNP [dm3] 2L_6512132_SNP [dm6]	T	C	2.426e^-4	0.956	INTRON CG31637
2R	6653257	2R_6653257_SNP [dm3] 2R_10765752_SNP [dm6]	A	G	2.440e^-4	0.956	INTRON CG33144
3L	738586	3L_738586_SNP [dm3] 3L_738586_SNP [dm6]	T	G	2.443e^-4	0.956	SYNONYMOUS_CODING hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	8519153	2R_8519153_SNP [dm3] 2R_12631648_SNP [dm6]	A	G	2.450e^-4	0.956	INTRON muskelin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	14612585	3L_14612585_SNP [dm3] 3L_14619485_SNP [dm6]	G	T	2.454e^-4	0.956	NON_SYNONYMOUS_CODING shd UPSTREAM shd
3R	15779979	3R_15779979_SNP [dm3] 3R_19954257_SNP [dm6]	G	A	2.455e^-4	0.956	INTRON Hs6st
3R	17313521	3R_17313521_SNP [dm3] 3R_21487799_SNP [dm6]	G	T	2.467e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	22490865	3L_22490865_SNP [dm3] 3L_22497765_SNP [dm6]	A	T	2.471e^-4	0.956	UPSTREAM CR45430 & 1 other INTERGENIC
3L	3626919	3L_3626919_SNP [dm3] 3L_3626919_SNP [dm6]	C	T	2.523e^-4	0.956	UTR_5_PRIME dar1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	15933090	2R_15933090_SNP [dm3] 2R_20045585_SNP [dm6]	A	T	2.525e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13725624	2L_13725624_SNP [dm3] 2L_13725624_SNP [dm6]	A	G	2.538e^-4	0.956	INTERGENIC
2L	22014976	2L_22014976_DEL [dm3] 2L_22014976_DEL [dm6]	GGCAATAAG	G	2.547e^-4	0.956	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
3L	10247464	3L_10247464_SNP [dm3] 3L_10254364_SNP [dm6]	T	G	2.550e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	12111294	2R_12111294_SNP [dm3] 2R_16223789_SNP [dm6]	G	T	2.578e^-4	0.956	SYNONYMOUS_CODING CG15706 DOWNSTREAM CR43898	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	17302949	3R_17302949_SNP [dm3] 3R_21477227_SNP [dm6]	A	G	2.592e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17303022	3R_17303022_SNP [dm3] 3R_21477300_SNP [dm6]	A	C	2.592e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	17303051	3R_17303051_SNP [dm3] 3R_21477329_SNP [dm6]	C	T	2.592e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8495093	2R_8495093_SNP [dm3] 2R_12607588_SNP [dm6]	C	T	2.594e^-4	0.956	SYNONYMOUS_CODING Amph
3R	24091514	3R_24091514_SNP [dm3] 3R_28265792_SNP [dm6]	G	T	2.595e^-4	0.956	INTERGENIC
2R	16999397	2R_16999397_SNP [dm3] 2R_21111892_SNP [dm6]	A	G	2.600e^-4	0.956	INTRON ktub
3L	7550938	3L_7550938_SNP [dm3] 3L_7557838_SNP [dm6]	A	G	2.605e^-4	0.956	INTRON CG14837
3L	9700420	3L_9700420_SNP [dm3] 3L_9707320_SNP [dm6]	A	G	2.609e^-4	0.956	SYNONYMOUS_CODING CG16711	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15922518	3R_15922518_SNP [dm3] 3R_20096796_SNP [dm6]	T	C	2.611e^-4	0.956	INTERGENIC
3L	10928341	3L_10928341_DEL [dm3] 3L_10935241_DEL [dm6]	GTGGG	G	2.619e^-4	0.956	INTERGENIC
2L	22014838	2L_22014838_SNP [dm3] 2L_22014838_SNP [dm6]	A	G	2.623e^-4	0.956	UPSTREAM CG31693 INTERGENIC	transposable element FlyBase
2L	1155189	2L_1155189_SNP [dm3] 2L_1155189_SNP [dm6]	T	C	2.647e^-4	0.956	INTRON capt
3R	15922486	3R_15922486_SNP [dm3] 3R_20096764_SNP [dm6]	G	C	2.657e^-4	0.956	INTERGENIC
3L	5628628	3L_5628628_SNP [dm3] 3L_5635528_SNP [dm6]	T	C	2.669e^-4	0.956	UPSTREAM Blimp-1 INTRON Blimp-1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	582080	2L_582080_SNP [dm3] 2L_582080_SNP [dm6]	G	C	2.671e^-4	0.956	INTERGENIC
3R	13239347	3R_13239347_SNP [dm3] 3R_17413625_SNP [dm6]	T	C	2.676e^-4	0.956	UTR_3_PRIME CG42821 UPSTREAM CG42822 DOWNSTREAM CG5863
3L	5234166	3L_5234166_SNP [dm3] 3L_5241066_SNP [dm6]	C	A	2.679e^-4	0.956	INTRON shep
3L	5234177	3L_5234177_SNP [dm3] 3L_5241077_SNP [dm6]	A	T	2.679e^-4	0.956	INTRON shep
2L	9636860	2L_9636860_SNP [dm3] 2L_9636860_SNP [dm6]	C	G	2.680e^-4	0.956	INTRON Apoltp
3R	25309138	3R_25309138_SNP [dm3] 3R_29483416_SNP [dm6]	A	T	2.681e^-4	0.956	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22924361	3R_22924361_SNP [dm3] 3R_27098639_SNP [dm6]	G	T	2.692e^-4	0.956	NON_SYNONYMOUS_CODING eater	TF binding site mE1_TFBS_sens
3L	9681244	3L_9681244_SNP [dm3] 3L_9688144_SNP [dm6]	T	C	2.695e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
2L	7765185	2L_7765185_SNP [dm3] 2L_7765185_SNP [dm6]	A	G	2.708e^-4	0.956	INTRON CG7196
3L	7550885	3L_7550885_SNP [dm3] 3L_7557785_SNP [dm6]	A	G	2.709e^-4	0.956	INTRON CG14837
3R	10836087	3R_10836087_SNP [dm3] 3R_15010365_SNP [dm6]	C	G	2.709e^-4	0.956	INTERGENIC
X	10331259	X_10331259_SNP [dm3] X_10437226_SNP [dm6]	C	G	2.744e^-4	0.956	INTRON CG32683
3L	8533471	3L_8533471_SNP [dm3] 3L_8540371_SNP [dm6]	C	T	2.745e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8167588	2R_8167588_SNP [dm3] 2R_12280083_SNP [dm6]	C	G	2.750e^-4	0.956	UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3L	10806029	3L_10806029_SNP [dm3] 3L_10812929_SNP [dm6]	G	A	2.753e^-4	0.956	INTERGENIC
3L	9593535	3L_9593535_SNP [dm3] 3L_9600435_SNP [dm6]	C	A	2.758e^-4	0.956	DOWNSTREAM CG3088 & 1 other INTERGENIC
3R	27280529	3R_27280529_SNP [dm3] 3R_31454807_SNP [dm6]	T	G	2.779e^-4	0.956	INTRON Gprk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	9702468	3L_9702468_SNP [dm3] 3L_9709368_SNP [dm6]	A	T	2.815e^-4	0.956	UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3R	10780295	3R_10780295_SNP [dm3] 3R_14954573_SNP [dm6]	A	C	2.816e^-4	0.956	INTERGENIC
3R	10306392	3R_10306392_SNP [dm3] 3R_14480670_SNP [dm6]	C	T	2.823e^-4	0.956	UTR_5_PRIME cv-c	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	8830932	2L_8830932_SNP [dm3] 2L_8830932_SNP [dm6]	G	T	2.833e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	10312908	3R_10312908_SNP [dm3] 3R_14487186_SNP [dm6]	C	T	2.851e^-4	0.956	INTERGENIC
3L	10247478	3L_10247478_SNP [dm3] 3L_10254378_SNP [dm6]	A	T	2.858e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18131900	3L_18131900_SNP [dm3] 3L_18138800_SNP [dm6]	A	T	2.859e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2376621	3L_2376621_SNP [dm3] 3L_2376621_SNP [dm6]	C	T	2.874e^-4	0.956	NON_SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
3R	15403357	3R_15403357_DEL [dm3] 3R_19577635_DEL [dm6]	TAAATATAT	T	2.894e^-4	0.956	INTRON Dys
X	4209512	X_4209512_SNP [dm3] X_4315479_SNP [dm6]	G	T	2.901e^-4	0.956	SYNONYMOUS_CODING mei-9 UPSTREAM CR44957
X	5055592	X_5055592_SNP [dm3] X_5161559_SNP [dm6]	A	T	2.903e^-4	0.956	INTRON rg & 1 other
3R	16986627	3R_16986627_SNP [dm3] 3R_21160905_SNP [dm6]	C	T	2.917e^-4	0.956	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma	TF binding site mE1_TFBS_sens
3L	7489813	3L_7489813_SNP [dm3] 3L_7496713_SNP [dm6]	G	A	2.919e^-4	0.956	UPSTREAM Cyp4d8 DOWNSTREAM CG8539 INTERGENIC
2R	11290398	2R_11290398_SNP [dm3] 2R_15402893_SNP [dm6]	T	G	2.932e^-4	0.956	INTRON CG43729
3L	13357143	3L_13357143_SNP [dm3] 3L_13364043_SNP [dm6]	C	T	2.933e^-4	0.956	INTERGENIC
3R	20520918	3R_20520918_SNP [dm3] 3R_24695196_SNP [dm6]	A	G	2.933e^-4	0.956	INTRON slo
X	19239645	X_19239645_INS [dm3] X_19345612_INS [dm6]	T	TATTCTGAGTAACGTTCGAA...	2.968e^-4	0.956	INTRON nAChRalpha7
3L	18131828	3L_18131828_SNP [dm3] 3L_18138728_SNP [dm6]	T	A	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131832	3L_18131832_INS [dm3] 3L_18138732_INS [dm6]	G	GTAT	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131834	3L_18131834_INS [dm3] 3L_18138734_INS [dm6]	T	TCAATATG	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131838	3L_18131838_INS [dm3] 3L_18138738_INS [dm6]	G	GGTATCACCTCT...	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131841	3L_18131841_SNP [dm3] 3L_18138741_SNP [dm6]	A	G	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131845	3L_18131845_SNP [dm3] 3L_18138745_SNP [dm6]	G	A	2.988e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	14316689	3R_14316689_SNP [dm3] 3R_18490967_SNP [dm6]	C	A	2.993e^-4	0.956	INTRON fru
3L	7092648	3L_7092648_SNP [dm3] 3L_7099548_SNP [dm6]	G	A	2.998e^-4	0.956	INTRON form3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	24837902	3R_24837902_SNP [dm3] 3R_29012180_SNP [dm6]	G	A	3.008e^-4	0.956	INTRON wat
3R	9502296	3R_9502296_SNP [dm3] 3R_13676574_SNP [dm6]	A	C	3.019e^-4	0.956	UTR_5_PRIME CG9588 & 1 other UPSTREAM lkb1	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	6711522	2R_6711522_SNP [dm3] 2R_10824017_SNP [dm6]	C	G	3.033e^-4	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	24252398	3R_24252398_SNP [dm3] 3R_28426676_SNP [dm6]	T	A	3.034e^-4	0.956	INTRON beat-VI
2R	9451770	2R_9451770_SNP [dm3] 2R_13564265_SNP [dm6]	G	A	3.040e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3R	25646157	3R_25646157_SNP [dm3] 3R_29820435_SNP [dm6]	A	C	3.043e^-4	0.956	INTRON neo
3L	22497058	3L_22497058_SNP [dm3] 3L_22503958_SNP [dm6]	C	G	3.060e^-4	0.956	NON_SYNONYMOUS_CODING CG43330 UPSTREAM CG43331 DOWNSTREAM CG43329	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	2436321	3L_2436321_SNP [dm3] 3L_2436321_SNP [dm6]	A	T	3.060e^-4	0.956	INTRON CG45186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8303639	2L_8303639_SNP [dm3] 2L_8303639_SNP [dm6]	C	T	3.070e^-4	0.956	SYNONYMOUS_CODING Scgalpha UPSTREAM wol	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	20829367	3R_20829367_SNP [dm3] 3R_25003645_SNP [dm6]	T	C	3.084e^-4	0.956	INTRON tnc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11290491	2R_11290491_SNP [dm3] 2R_15402986_SNP [dm6]	A	G	3.096e^-4	0.956	INTRON CG43729
3L	10319482	3L_10319482_SNP [dm3] 3L_10326382_SNP [dm6]	T	C	3.109e^-4	0.956	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
3R	17067587	3R_17067587_SNP [dm3] 3R_21241865_SNP [dm6]	A	G	3.167e^-4	0.956	UPSTREAM CG5892 INTERGENIC	regulatory region REDfly_CRMs
2L	21065754	2L_21065754_SNP [dm3] 2L_21065754_SNP [dm6]	T	C	3.207e^-4	0.956	INTRON CG9265
3R	26612509	3R_26612509_SNP [dm3] 3R_30786787_SNP [dm6]	G	A	3.219e^-4	0.956	UTR_3_PRIME zfh1
3R	23561349	3R_23561349_SNP [dm3] 3R_27735627_SNP [dm6]	G	A	3.227e^-4	0.956	UPSTREAM Ets98B INTERGENIC
2L	3632065	2L_3632065_SNP [dm3] 2L_3632065_SNP [dm6]	T	A	3.236e^-4	0.956	UTR_5_PRIME for INTRON for	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	25646593	3R_25646593_SNP [dm3] 3R_29820871_SNP [dm6]	A	G	3.268e^-4	0.956	INTRON neo
2L	11776481	2L_11776481_SNP [dm3] 2L_11776481_SNP [dm6]	A	T	3.270e^-4	0.956	INTERGENIC
3R	16817761	3R_16817761_SNP [dm3] 3R_20992039_SNP [dm6]	G	T	3.274e^-4	0.956	INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	3415519	X_3415519_SNP [dm3] X_3521486_SNP [dm6]	A	G	3.280e^-4	0.956	INTRON CR44999 & 1 other	TF binding site mE1_TFBS_inv
3L	2399537	3L_2399537_SNP [dm3] 3L_2399537_SNP [dm6]	A	T	3.293e^-4	0.956	UPSTREAM CG45186 INTRON CG45186
3L	7550880	3L_7550880_SNP [dm3] 3L_7557780_SNP [dm6]	T	C	3.300e^-4	0.956	INTRON CG14837
2L	8957990	2L_8957990_SNP [dm3] 2L_8957990_SNP [dm6]	C	G	3.301e^-4	0.956	UTR_5_PRIME CG31886 INTRON CG31886	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	10132597	X_10132597_SNP [dm3] X_10238564_SNP [dm6]	C	T	3.301e^-4	0.956	UTR_3_PRIME Hk	TF binding site mE1_TFBS_chinmo
X	8155409	X_8155409_SNP [dm3] X_8261376_SNP [dm6]	C	G	3.308e^-4	0.956	INTRON CG1632
2R	17289109	2R_17289109_DEL [dm3] 2R_21401604_DEL [dm6]	CCAGC	G	3.310e^-4	0.956	INTRON Sdc	TF binding site mE1_TFBS_cad
2L	4719429	2L_4719429_SNP [dm3] 2L_4719429_SNP [dm6]	C	A	3.315e^-4	0.956	INTRON CG34351
3L	2284650	3L_2284650_SNP [dm3] 3L_2284650_SNP [dm6]	C	T	3.316e^-4	0.956	INTRON MsR2
2L	21825190	2L_21825190_SNP [dm3] 2L_21825190_SNP [dm6]	T	C	3.328e^-4	0.956	INTERGENIC
2L	15235596	2L_15235596_SNP [dm3] 2L_15235596_SNP [dm6]	G	A	3.333e^-4	0.956	INTRON ZnT35C
3L	11951939	3L_11951939_SNP [dm3] 3L_11958839_SNP [dm6]	G	A	3.342e^-4	0.956	UTR_3_PRIME CG43294 DOWNSTREAM prc
3R	5656261	3R_5656261_SNP [dm3] 3R_9830539_SNP [dm6]	A	T	3.351e^-4	0.956	INTRON Teh1
2R	16632075	2R_16632075_SNP [dm3] 2R_20744570_SNP [dm6]	T	A	3.361e^-4	0.956	INTRON dpr
2L	4962496	2L_4962496_SNP [dm3] 2L_4962496_SNP [dm6]	A	C	3.379e^-4	0.956	SPLICE_SITE_REGION CG34124 INTRON CG34124	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	21253705	3R_21253705_INS [dm3] 3R_25427983_INS [dm6]	A	AG	3.383e^-4	0.956	INTRON Fur1
3L	10319747	3L_10319747_SNP [dm3] 3L_10326647_SNP [dm6]	T	C	3.407e^-4	0.956	UPSTREAM CR45244 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_z
2L	9636864	2L_9636864_SNP [dm3] 2L_9636864_SNP [dm6]	C	T	3.409e^-4	0.956	INTRON Apoltp
2R	19679669	2R_19679669_SNP [dm3] 2R_23792146_SNP [dm6]	A	T	3.445e^-4	0.956	UPSTREAM CG15800 INTRON CG9850
X	11769504	X_11769504_SNP [dm3] X_11875471_SNP [dm6]	G	A	3.459e^-4	0.956	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
X	11769583	X_11769583_SNP [dm3] X_11875550_SNP [dm6]	C	T	3.459e^-4	0.956	UTR_3_PRIME CG10352 DOWNSTREAM CG15739
2L	2628832	2L_2628832_SNP [dm3] 2L_2628832_SNP [dm6]	C	A	3.468e^-4	0.956	UPSTREAM CR45705 INTERGENIC
2R	6711618	2R_6711618_SNP [dm3] 2R_10824113_SNP [dm6]	C	A	3.499e^-4	0.956	SYNONYMOUS_CODING CG12325 UPSTREAM CG12343	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	12024931	3R_12024931_SNP [dm3] 3R_16199209_SNP [dm6]	G	T	3.500e^-4	0.956	INTRON CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12025117	3R_12025117_SNP [dm3] 3R_16199395_SNP [dm6]	G	A	3.500e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8498024	2R_8498024_SNP [dm3] 2R_12610519_SNP [dm6]	T	G	3.510e^-4	0.956	INTRON Amph	TF binding site mE1_TFBS_HSA
3R	4009681	3R_4009681_SNP [dm3] 3R_8183959_SNP [dm6]	G	C	3.510e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4009696	3R_4009696_SNP [dm3] 3R_8183974_SNP [dm6]	A	T	3.510e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4009722	3R_4009722_INS [dm3] 3R_8184000_INS [dm6]	C	CG	3.510e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25646239	3R_25646239_DEL [dm3] 3R_29820517_DEL [dm6]	TCCTTCAGCACTCCCT...	T	3.512e^-4	0.956	INTRON neo
2R	19307153	2R_19307153_SNP [dm3] 2R_23419630_SNP [dm6]	C	G	3.518e^-4	0.956	UTR_5_PRIME CG9812 UPSTREAM CG9812
3L	18131824	3L_18131824_SNP [dm3] 3L_18138724_SNP [dm6]	C	A	3.551e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9887582	3L_9887582_SNP [dm3] 3L_9894482_SNP [dm6]	T	C	3.560e^-4	0.956	SYNONYMOUS_CODING CG14164 UTR_5_PRIME CG6709 UPSTREAM CG6709 DOWNSTREAM CG6707
3R	11826178	3R_11826178_SNP [dm3] 3R_16000456_SNP [dm6]	T	A	3.560e^-4	0.956	INTRON srp	TF binding site BDTNP1_TFBS_da
2L	17568370	2L_17568370_SNP [dm3] 2L_17568370_SNP [dm6]	A	T	3.576e^-4	0.956	INTERGENIC
3R	26531554	3R_26531554_SNP [dm3] 3R_30705832_SNP [dm6]	T	C	3.586e^-4	0.956	SYNONYMOUS_CODING CG31010	TF binding site mE1_TFBS_ftz_f1 mE1_TFBS_HSA
2L	8849757	2L_8849757_SNP [dm3] 2L_8849757_SNP [dm6]	C	T	3.591e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
3L	9702370	3L_9702370_SNP [dm3] 3L_9709270_SNP [dm6]	T	G	3.595e^-4	0.956	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3R	23195593	3R_23195593_SNP [dm3] 3R_27369871_SNP [dm6]	A	G	3.596e^-4	0.956	UPSTREAM CR43476 INTRON CG42534
3R	12641673	3R_12641673_SNP [dm3] 3R_16815951_SNP [dm6]	A	G	3.598e^-4	0.956	INTRON abd-A	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1842540	3L_1842540_SNP [dm3] 3L_1842540_SNP [dm6]	A	G	3.599e^-4	0.956	UPSTREAM Cpr62Bc INTERGENIC
3R	22983454	3R_22983454_SNP [dm3] 3R_27157732_SNP [dm6]	T	A	3.600e^-4	0.956	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	22983455	3R_22983455_SNP [dm3] 3R_27157733_SNP [dm6]	T	G	3.600e^-4	0.956	UPSTREAM grass DOWNSTREAM Men-b INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26178740	3R_26178740_SNP [dm3] 3R_30353018_SNP [dm6]	G	C	3.600e^-4	0.956	INTRON hdc
3L	8102127	3L_8102127_SNP [dm3] 3L_8109027_SNP [dm6]	G	C	3.610e^-4	0.956	UPSTREAM fan DOWNSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8102141	3L_8102141_SNP [dm3] 3L_8109041_SNP [dm6]	A	G	3.610e^-4	0.956	UPSTREAM fan DOWNSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	9424519	3R_9424519_SNP [dm3] 3R_13598797_SNP [dm6]	T	C	3.613e^-4	0.956	INTERGENIC
3R	5045868	3R_5045868_DEL [dm3] 3R_9220146_DEL [dm6]	AGAATAA	A	3.615e^-4	0.956	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18941057	2R_18941057_SNP [dm3] 2R_23053534_SNP [dm6]	A	G	3.633e^-4	0.956	INTERGENIC
2L	17668187	2L_17668187_SNP [dm3] 2L_17668187_SNP [dm6]	C	A	3.633e^-4	0.956	INTRON CadN
3L	9681216	3L_9681216_SNP [dm3] 3L_9688116_SNP [dm6]	T	A	3.640e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
3L	9681231	3L_9681231_INS [dm3] 3L_9688131_INS [dm6]	A	AG	3.640e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
3R	15082505	3R_15082505_SNP [dm3] 3R_19256783_SNP [dm6]	G	A	3.647e^-4	0.956	UTR_5_PRIME CG14280 UPSTREAM CG14280	TF binding site mE1_TFBS_chinmo
2L	4108335	2L_4108335_SNP [dm3] 2L_4108335_SNP [dm6]	G	C	3.664e^-4	0.956	INTRON ed
3L	5234182	3L_5234182_SNP [dm3] 3L_5241082_SNP [dm6]	C	T	3.670e^-4	0.956	INTRON shep
2R	11302380	2R_11302380_SNP [dm3] 2R_15414875_SNP [dm6]	A	C	3.685e^-4	0.956	INTRON CG43729
3R	10779915	3R_10779915_DEL [dm3] 3R_14954193_DEL [dm6]	TT	T	3.691e^-4	0.956	INTERGENIC
3R	10779920	3R_10779920_INS [dm3] 3R_14954198_INS [dm6]	A	ATA	3.691e^-4	0.956	INTERGENIC
3R	10779923	3R_10779923_INS [dm3] 3R_14954201_INS [dm6]	T	TTAT	3.691e^-4	0.956	INTERGENIC
3R	10779990	3R_10779990_SNP [dm3] 3R_14954268_SNP [dm6]	T	C	3.691e^-4	0.956	INTERGENIC
3R	20604927	3R_20604927_SNP [dm3] 3R_24779205_SNP [dm6]	C	T	3.716e^-4	0.956	UPSTREAM CG42331 INTRON CG42331
X	5445240	X_5445240_SNP [dm3] X_5551207_SNP [dm6]	G	C	3.725e^-4	0.956	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	2375597	3L_2375597_SNP [dm3] 3L_2375597_SNP [dm6]	G	A	3.741e^-4	0.956	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3L	2376069	3L_2376069_SNP [dm3] 3L_2376069_SNP [dm6]	C	T	3.741e^-4	0.956	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3R	17303045	3R_17303045_SNP [dm3] 3R_21477323_SNP [dm6]	C	A	3.746e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	6529514	2R_6529514_SNP [dm3] 2R_10642009_SNP [dm6]	T	C	3.747e^-4	0.956	UTR_3_PRIME Git DOWNSTREAM CG11883
3R	21677108	3R_21677108_SNP [dm3] 3R_25851386_SNP [dm6]	A	G	3.758e^-4	0.956	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	26585232	3R_26585232_SNP [dm3] 3R_30759510_SNP [dm6]	G	A	3.760e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cnc mE1_TFBS_HSA
3R	15922566	3R_15922566_SNP [dm3] 3R_20096844_SNP [dm6]	G	T	3.765e^-4	0.956	INTERGENIC
2L	582081	2L_582081_SNP [dm3] 2L_582081_SNP [dm6]	A	C	3.771e^-4	0.956	INTERGENIC
3L	7081544	3L_7081544_SNP [dm3] 3L_7088444_SNP [dm6]	A	G	3.780e^-4	0.956	SYNONYMOUS_CODING Cpr65Eb
3R	15399259	3R_15399259_SNP [dm3] 3R_19573537_SNP [dm6]	G	A	3.790e^-4	0.956	INTRON Dys
X	11074118	X_11074118_SNP [dm3] X_11180085_SNP [dm6]	A	G	3.795e^-4	0.956	INTERGENIC
2R	8491841	2R_8491841_SNP [dm3] 2R_12604336_SNP [dm6]	T	G	3.796e^-4	0.956	INTRON Amph
X	8402862	X_8402862_SNP [dm3] X_8508829_SNP [dm6]	A	T	3.836e^-4	0.956	UPSTREAM CG33181 INTRON CG33181
X	8402865	X_8402865_SNP [dm3] X_8508832_SNP [dm6]	A	C	3.836e^-4	0.956	UPSTREAM CG33181 INTRON CG33181
2L	10602469	2L_10602469_SNP [dm3] 2L_10602469_SNP [dm6]	A	G	3.868e^-4	0.956	INTRON Trim9
2L	8894388	2L_8894388_SNP [dm3] 2L_8894388_SNP [dm6]	A	T	3.869e^-4	0.956	INTERGENIC
3L	3578609	3L_3578609_SNP [dm3] 3L_3578609_SNP [dm6]	G	A	3.887e^-4	0.956	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd
3L	5992692	3L_5992692_SNP [dm3] 3L_5999592_SNP [dm6]	A	T	3.887e^-4	0.956	INTRON PVRAP
3R	10368938	3R_10368938_SNP [dm3] 3R_14543216_SNP [dm6]	G	C	3.888e^-4	0.956	INTRON Pde6
2L	5519921	2L_5519921_SNP [dm3] 2L_5519921_SNP [dm6]	C	A	3.898e^-4	0.956	UPSTREAM cl & 1 other DOWNSTREAM CG14020 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11982313	3L_11982313_SNP [dm3] 3L_11989213_SNP [dm6]	C	T	3.916e^-4	0.956	INTRON CG6938
3L	10336232	3L_10336232_SNP [dm3] 3L_10343132_SNP [dm6]	C	A	3.917e^-4	0.956	INTERGENIC
X	5527946	X_5527946_SNP [dm3] X_5633913_SNP [dm6]	G	T	3.935e^-4	0.956	SYNONYMOUS_CODING CG42492
3R	18395835	3R_18395835_SNP [dm3] 3R_22570113_SNP [dm6]	G	A	3.948e^-4	0.956	UPSTREAM CG33110 INTERGENIC
2R	11290281	2R_11290281_SNP [dm3] 2R_15402776_SNP [dm6]	T	C	3.950e^-4	0.956	INTRON CG43729
2L	582910	2L_582910_SNP [dm3] 2L_582910_SNP [dm6]	T	C	3.951e^-4	0.956	DOWNSTREAM Gsc INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12082585	3L_12082585_SNP [dm3] 3L_12089485_SNP [dm6]	G	T	3.972e^-4	0.956	DOWNSTREAM CG17154 INTERGENIC	TF binding site mE1_TFBS_inv
X	5698313	X_5698313_SNP [dm3] X_5804280_SNP [dm6]	G	A	3.983e^-4	0.956	UPSTREAM Cpr5C INTERGENIC
3R	10780498	3R_10780498_SNP [dm3] 3R_14954776_SNP [dm6]	A	T	3.989e^-4	0.956	INTERGENIC
3L	2376562	3L_2376562_SNP [dm3] 3L_2376562_SNP [dm6]	G	A	3.989e^-4	0.956	SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
X	4785049	X_4785049_SNP [dm3] X_4891016_SNP [dm6]	T	C	3.989e^-4	0.956	INTRON CG42594
3R	14524581	3R_14524581_SNP [dm3] 3R_18698859_SNP [dm6]	A	G	4.009e^-4	0.956	INTERGENIC
3R	22285565	3R_22285565_SNP [dm3] 3R_26459843_SNP [dm6]	G	T	4.024e^-4	0.956	SPLICE_SITE_REGION CG14238 INTRON CG14238
3R	22285654	3R_22285654_SNP [dm3] 3R_26459932_SNP [dm6]	G	C	4.024e^-4	0.956	SYNONYMOUS_CODING CG14238
3L	742917	3L_742917_SNP [dm3] 3L_742917_SNP [dm6]	G	T	4.030e^-4	0.956	DOWNSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	17506964	3R_17506964_SNP [dm3] 3R_21681242_SNP [dm6]	T	C	4.036e^-4	0.956	INTRON CG31176
2R	588904	2R_588904_SNP [dm3] 2R_4701399_SNP [dm6]	T	A	4.038e^-4	0.956	INTRON Nipped-B	transposable element FlyBase
2R	595162	2R_595162_SNP [dm3] 2R_4707657_SNP [dm6]	C	T	4.038e^-4	0.956	INTRON Nipped-B
3R	21502946	3R_21502946_SNP [dm3] 3R_25677224_SNP [dm6]	G	A	4.038e^-4	0.956	UTR_3_PRIME CG4730 UPSTREAM CR45225 DOWNSTREAM Lgr3
3L	18889092	3L_18889092_DEL [dm3] 3L_18895992_DEL [dm6]	GCTCAGATTACGCAACAGTT...	G	4.042e^-4	0.956	DOWNSTREAM snoRNA:Psi28S-2566 INTRON CG3902	TF binding site mE1_TFBS_cad
X	16079652	X_16079652_SNP [dm3] X_16185619_SNP [dm6]	G	A	4.051e^-4	0.956	INTERGENIC
3L	5354168	3L_5354168_SNP [dm3] 3L_5361068_SNP [dm6]	C	T	4.069e^-4	0.956	INTRON CG4769	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9668423	2L_9668423_SNP [dm3] 2L_9668423_SNP [dm6]	T	C	4.069e^-4	0.956	INTERGENIC
2R	7897591	2R_7897591_SNP [dm3] 2R_12010086_SNP [dm6]	C	T	4.071e^-4	0.956	INTRON otk	regulatory region REDfly_CRMs
3R	15746648	3R_15746648_SNP [dm3] 3R_19920926_SNP [dm6]	A	G	4.071e^-4	0.956	DOWNSTREAM CG4770 & 1 other EXON CR43282
3L	18131816	3L_18131816_SNP [dm3] 3L_18138716_SNP [dm6]	T	C	4.087e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18280344	3R_18280344_SNP [dm3] 3R_22454622_SNP [dm6]	A	T	4.103e^-4	0.956	INTRON CG34376	TF binding site mE1_TFBS_cad
2L	1145294	2L_1145294_SNP [dm3] 2L_1145294_SNP [dm6]	C	G	4.114e^-4	0.956	INTRON MFS3	TF binding site mE1_TFBS_cad
2L	14912715	2L_14912715_INS [dm3] 2L_14912715_INS [dm6]	A	ACTTTTGA	4.114e^-4	0.956	INTRON CG42313
2L	14912738	2L_14912738_DEL [dm3] 2L_14912738_DEL [dm6]	AA	A	4.114e^-4	0.956	INTRON CG42313
3R	26067517	3R_26067517_SNP [dm3] 3R_30241795_SNP [dm6]	A	G	4.114e^-4	0.956	SYNONYMOUS_CODING CG9737	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8958836	2L_8958836_SNP [dm3] 2L_8958836_SNP [dm6]	T	A	4.117e^-4	0.956	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_z
2L	17410053	2L_17410053_SNP [dm3] 2L_17410053_SNP [dm6]	A	C	4.132e^-4	0.956	UPSTREAM CG15141 DOWNSTREAM CLIP-190 INTRON Rpb11	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	8359050	3L_8359050_SNP [dm3] 3L_8365950_SNP [dm6]	A	G	4.155e^-4	0.956	INTERGENIC
3R	20665254	3R_20665254_SNP [dm3] 3R_24839532_SNP [dm6]	T	A	4.157e^-4	0.956	DOWNSTREAM CG33658 INTRON sosie
2L	4021757	2L_4021757_SNP [dm3] 2L_4021757_SNP [dm6]	T	G	4.163e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3R	3222023	3R_3222023_SNP [dm3] 3R_7396301_SNP [dm6]	A	T	4.172e^-4	0.956	INTERGENIC
X	7690993	X_7690993_SNP [dm3] X_7796960_SNP [dm6]	G	A	4.181e^-4	0.956	INTERGENIC
2L	13725623	2L_13725623_SNP [dm3] 2L_13725623_SNP [dm6]	T	C	4.181e^-4	0.956	INTERGENIC
3L	4521934	3L_4521934_SNP [dm3] 3L_4521934_SNP [dm6]	T	C	4.191e^-4	0.956	INTRON Tie
3L	9702361	3L_9702361_SNP [dm3] 3L_9709261_SNP [dm6]	G	A	4.202e^-4	0.956	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
3R	24242833	3R_24242833_SNP [dm3] 3R_28417111_SNP [dm6]	G	A	4.206e^-4	0.956	INTERGENIC
3R	17307599	3R_17307599_SNP [dm3] 3R_21481877_SNP [dm6]	A	G	4.207e^-4	0.956	UPSTREAM CG7922 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3L	3878811	3L_3878811_SNP [dm3] 3L_3878811_SNP [dm6]	A	G	4.209e^-4	0.956	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	16740735	3L_16740735_SNP [dm3] 3L_16747635_SNP [dm6]	C	G	4.232e^-4	0.956	INTERGENIC
3L	13395072	3L_13395072_SNP [dm3] 3L_13401972_SNP [dm6]	A	T	4.236e^-4	0.956	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13395151	3L_13395151_SNP [dm3] 3L_13402051_SNP [dm6]	G	A	4.236e^-4	0.956	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	13395152	3L_13395152_SNP [dm3] 3L_13402052_SNP [dm6]	A	G	4.236e^-4	0.956	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	14529590	3R_14529590_SNP [dm3] 3R_18703868_SNP [dm6]	A	T	4.244e^-4	0.956	INTERGENIC
3L	5623909	3L_5623909_SNP [dm3] 3L_5630809_SNP [dm6]	T	C	4.253e^-4	0.956	UPSTREAM Blimp-1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	14325040	X_14325040_SNP [dm3] X_14431007_SNP [dm6]	C	T	4.263e^-4	0.956	INTRON dpr8
2L	14501786	2L_14501786_SNP [dm3] 2L_14501786_SNP [dm6]	G	A	4.268e^-4	0.956	INTERGENIC
3L	18219914	3L_18219914_SNP [dm3] 3L_18226814_SNP [dm6]	T	A	4.286e^-4	0.956	INTERGENIC
3L	18219915	3L_18219915_SNP [dm3] 3L_18226815_SNP [dm6]	T	A	4.286e^-4	0.956	INTERGENIC
3L	8730969	3L_8730969_SNP [dm3] 3L_8737869_SNP [dm6]	T	C	4.296e^-4	0.956	UTR_5_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad
3R	12024071	3R_12024071_SNP [dm3] 3R_16198349_SNP [dm6]	G	T	4.298e^-4	0.956	SYNONYMOUS_CODING CG6126 DOWNSTREAM sra	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8039182	3L_8039182_SNP [dm3] 3L_8046082_SNP [dm6]	G	A	4.306e^-4	0.956	INTRON nmo
2L	9636896	2L_9636896_SNP [dm3] 2L_9636896_SNP [dm6]	T	C	4.309e^-4	0.956	INTRON Apoltp
2L	4935629	2L_4935629_SNP [dm3] 2L_4935629_SNP [dm6]	A	G	4.318e^-4	0.956	SYNONYMOUS_CODING hoe2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	15228170	3R_15228170_SNP [dm3] 3R_19402448_SNP [dm6]	A	G	4.338e^-4	0.956	INTRON Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	2376167	3L_2376167_SNP [dm3] 3L_2376167_SNP [dm6]	C	T	4.355e^-4	0.956	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
2R	7306872	2R_7306872_SNP [dm3] 2R_11419367_SNP [dm6]	G	T	4.364e^-4	0.956	INTRON Drip
2R	10548401	2R_10548401_SNP [dm3] 2R_14660896_SNP [dm6]	A	T	4.394e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10548429	2R_10548429_SNP [dm3] 2R_14660924_SNP [dm6]	A	C	4.394e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20604952	3R_20604952_INS [dm3] 3R_24779230_INS [dm6]	T	TT	4.421e^-4	0.956	UPSTREAM CG42331 INTRON CG42331
3L	6947978	3L_6947978_SNP [dm3] 3L_6954878_SNP [dm6]	A	G	4.421e^-4	0.956	SYNONYMOUS_CODING CG10077	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	8730967	3L_8730967_SNP [dm3] 3L_8737867_SNP [dm6]	C	T	4.435e^-4	0.956	UTR_5_PRIME Prm INTRON Prm	TF binding site mE1_TFBS_cad
3L	13923824	3L_13923824_SNP [dm3] 3L_13930724_SNP [dm6]	A	G	4.442e^-4	0.956	SYNONYMOUS_CODING Gl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	17077311	3R_17077311_SNP [dm3] 3R_21251589_SNP [dm6]	T	C	4.457e^-4	0.956	INTRON ETHR
2R	19337019	2R_19337019_DEL [dm3] 2R_23449496_DEL [dm6]	GAGGG	G	4.459e^-4	0.956	INTRON CG43795
X	20858130	X_20858130_SNP [dm3] X_20987103_SNP [dm6]	C	A	4.484e^-4	0.956	INTERGENIC
2L	10557697	2L_10557697_SNP [dm3] 2L_10557697_SNP [dm6]	G	A	4.490e^-4	0.956	INTRON Trim9	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	13933862	X_13933862_SNP [dm3] X_14039829_SNP [dm6]	A	G	4.492e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16644355	3R_16644355_SNP [dm3] 3R_20818633_SNP [dm6]	T	A	4.494e^-4	0.956	DOWNSTREAM CG17271 INTRON CG17270
3R	19639370	3R_19639370_SNP [dm3] 3R_23813648_SNP [dm6]	A	T	4.494e^-4	0.956	SYNONYMOUS_CODING eIF4G2 INTRON CG34355 & 1 other
3R	16701598	3R_16701598_SNP [dm3] 3R_20875876_SNP [dm6]	A	T	4.498e^-4	0.956	INTERGENIC
3R	12024506	3R_12024506_SNP [dm3] 3R_16198784_SNP [dm6]	G	A	4.509e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12024650	3R_12024650_SNP [dm3] 3R_16198928_SNP [dm6]	T	C	4.509e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9702491	3L_9702491_SNP [dm3] 3L_9709391_SNP [dm6]	A	T	4.531e^-4	0.956	UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
2L	5515381	2L_5515381_SNP [dm3] 2L_5515381_SNP [dm6]	C	T	4.544e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5515471	2L_5515471_SNP [dm3] 2L_5515471_SNP [dm6]	C	T	4.544e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25309139	3R_25309139_DEL [dm3] 3R_29483417_DEL [dm6]	TA	T	4.553e^-4	0.956	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11867560	X_11867560_SNP [dm3] X_11973527_SNP [dm6]	T	C	4.582e^-4	0.956	INTRON cac
3L	3878850	3L_3878850_SNP [dm3] 3L_3878850_SNP [dm6]	C	T	4.606e^-4	0.956	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
2L	2388996	2L_2388996_SNP [dm3] 2L_2388996_SNP [dm6]	C	G	4.610e^-4	0.956	DOWNSTREAM CG43750 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10282613	2L_10282613_SNP [dm3] 2L_10282613_SNP [dm6]	A	G	4.649e^-4	0.956	SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_sens
3L	10473908	3L_10473908_SNP [dm3] 3L_10480808_SNP [dm6]	C	T	4.661e^-4	0.956	UPSTREAM A2bp1 INTERGENIC
2R	16460112	2R_16460112_SNP [dm3] 2R_20572607_SNP [dm6]	A	G	4.661e^-4	0.956	INTRON qsm
2R	16460115	2R_16460115_SNP [dm3] 2R_20572610_SNP [dm6]	A	G	4.661e^-4	0.956	INTRON qsm
3L	7497292	3L_7497292_SNP [dm3] 3L_7504192_SNP [dm6]	T	C	4.662e^-4	0.956	INTERGENIC
2R	9444557	2R_9444557_SNP [dm3] 2R_13557052_SNP [dm6]	A	G	4.662e^-4	0.956	SYNONYMOUS_CODING link DOWNSTREAM snoRNA:Psi28S-1153 & 2 others	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	21253641	3R_21253641_SNP [dm3] 3R_25427919_SNP [dm6]	T	C	4.710e^-4	0.956	INTRON Fur1
3R	21253643	3R_21253643_SNP [dm3] 3R_25427921_SNP [dm6]	C	A	4.710e^-4	0.956	INTRON Fur1
2L	8354714	2L_8354714_SNP [dm3] 2L_8354714_SNP [dm6]	T	C	4.724e^-4	0.956	NON_SYNONYMOUS_CODING Mur29B DOWNSTREAM CG7627
2L	1760163	2L_1760163_SNP [dm3] 2L_1760163_SNP [dm6]	T	A	4.733e^-4	0.956	INTERGENIC
3L	736128	3L_736128_SNP [dm3] 3L_736128_SNP [dm6]	G	T	4.735e^-4	0.956	DOWNSTREAM CR43785 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	24604056	3R_24604056_SNP [dm3] 3R_28778334_SNP [dm6]	G	C	4.740e^-4	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	13744011	2L_13744011_SNP [dm3] 2L_13744011_SNP [dm6]	A	G	4.756e^-4	0.956	INTERGENIC
3L	18219907	3L_18219907_DEL [dm3] 3L_18226807_DEL [dm6]	TGT	T	4.762e^-4	0.956	INTERGENIC
3R	5035523	3R_5035523_SNP [dm3] 3R_9209801_SNP [dm6]	C	T	4.762e^-4	0.956	INTRON pum	TF binding site mE1_TFBS_inv
3R	5042602	3R_5042602_SNP [dm3] 3R_9216880_SNP [dm6]	G	T	4.762e^-4	0.956	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5049907	3R_5049907_SNP [dm3] 3R_9224185_SNP [dm6]	C	T	4.762e^-4	0.956	INTRON pum
X	6094654	X_6094654_SNP [dm3] X_6200621_SNP [dm6]	C	T	4.763e^-4	0.956	UPSTREAM CG43090 INTRON vanin-like
3R	17070868	3R_17070868_SNP [dm3] 3R_21245146_SNP [dm6]	C	T	4.764e^-4	0.956	SYNONYMOUS_CODING CG5892
3R	19540590	3R_19540590_SNP [dm3] 3R_23714868_SNP [dm6]	A	T	4.770e^-4	0.956	INTRON nau
3L	18131914	3L_18131914_DEL [dm3] 3L_18138814_DEL [dm6]	TTTAT	T	4.772e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	11981643	2R_11981643_SNP [dm3] 2R_16094138_SNP [dm6]	C	T	4.783e^-4	0.956	INTRON Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5234188	3L_5234188_SNP [dm3] 3L_5241088_SNP [dm6]	C	G	4.788e^-4	0.956	INTRON shep
3L	9681290	3L_9681290_SNP [dm3] 3L_9688190_SNP [dm6]	T	C	4.811e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
3L	9681291	3L_9681291_SNP [dm3] 3L_9688191_SNP [dm6]	A	T	4.811e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
3R	13642247	3R_13642247_SNP [dm3] 3R_17816525_SNP [dm6]	C	T	4.829e^-4	0.956	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24431072	3R_24431072_DEL [dm3] 3R_28605350_DEL [dm6]	TCTC	T	4.830e^-4	0.956	UPSTREAM CG9986 DOWNSTREAM Hrb98DE INTRON Hrb98DE
3L	14404515	3L_14404515_SNP [dm3] 3L_14411415_SNP [dm6]	C	A	4.836e^-4	0.956	UPSTREAM CR45233 INTRON CG3919	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8012329	2L_8012329_SNP [dm3] 2L_8012329_SNP [dm6]	C	G	4.840e^-4	0.956	UPSTREAM Tg INTRON Tg
2R	8493171	2R_8493171_SNP [dm3] 2R_12605666_SNP [dm6]	G	A	4.840e^-4	0.956	INTRON Amph
3R	26178009	3R_26178009_SNP [dm3] 3R_30352287_SNP [dm6]	C	T	4.840e^-4	0.956	INTRON hdc
3L	9703043	3L_9703043_SNP [dm3] 3L_9709943_SNP [dm6]	A	C	4.846e^-4	0.956	UTR_3_PRIME CG16711 DOWNSTREAM SH3PX1 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	17019866	3R_17019866_SNP [dm3] 3R_21194144_SNP [dm6]	A	C	4.853e^-4	0.956	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_twi
3L	11966091	3L_11966091_SNP [dm3] 3L_11972991_SNP [dm6]	C	G	4.880e^-4	0.956	UPSTREAM Muc68E DOWNSTREAM CG42397 INTERGENIC
X	8402870	X_8402870_SNP [dm3] X_8508837_SNP [dm6]	T	C	4.881e^-4	0.956	UPSTREAM CG33181 INTRON CG33181
2L	8700572	2L_8700572_SNP [dm3] 2L_8700572_SNP [dm6]	T	C	4.890e^-4	0.956	UPSTREAM Hnf4 INTRON Hnf4
3R	20604942	3R_20604942_DEL [dm3] 3R_24779220_DEL [dm6]	TG	T	4.903e^-4	0.956	UPSTREAM CG42331 INTRON CG42331
3R	20604947	3R_20604947_SNP [dm3] 3R_24779225_SNP [dm6]	A	T	4.903e^-4	0.956	UPSTREAM CG42331 INTRON CG42331
3R	3173055	3R_3173055_SNP [dm3] 3R_7347333_SNP [dm6]	A	G	4.904e^-4	0.956	SYNONYMOUS_CODING nxf4 DOWNSTREAM CG31496	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
3L	1117881	3L_1117881_SNP [dm3] 3L_1117881_SNP [dm6]	A	G	4.905e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	11017614	2R_11017614_SNP [dm3] 2R_15130109_SNP [dm6]	A	C	4.940e^-4	0.956	INTRON chn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr
3L	22522241	3L_22522241_SNP [dm3] 3L_22529141_SNP [dm6]	T	C	4.944e^-4	0.956	INTERGENIC
3R	20773410	3R_20773410_SNP [dm3] 3R_24947688_SNP [dm6]	G	A	4.952e^-4	0.956	SYNONYMOUS_CODING CG13646 DOWNSTREAM Nmnat	TF binding site mE1_TFBS_chinmo
3R	7011800	3R_7011800_SNP [dm3] 3R_11186078_SNP [dm6]	A	T	4.961e^-4	0.956	INTERGENIC
3R	25898299	3R_25898299_SNP [dm3] 3R_30072577_SNP [dm6]	T	A	4.966e^-4	0.956	INTRON sima	TF binding site mE1_TFBS_chinmo
3R	24839218	3R_24839218_SNP [dm3] 3R_29013496_SNP [dm6]	G	C	4.968e^-4	0.956	INTRON wat
3L	13395073	3L_13395073_DEL [dm3] 3L_13401973_DEL [dm6]	ATATAGGAGAA...	A	4.971e^-4	0.956	UPSTREAM sens INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	25903837	3R_25903837_SNP [dm3] 3R_30078115_SNP [dm6]	T	C	4.995e^-4	0.956	INTRON sima
3L	9702349	3L_9702349_SNP [dm3] 3L_9709249_SNP [dm6]	T	C	5.007e^-4	0.956	SYNONYMOUS_CODING CG16711 UTR_3_PRIME CG16711	TF binding site mE1_TFBS_cad
2R	14007726	2R_14007726_SNP [dm3] 2R_18120221_SNP [dm6]	G	A	5.012e^-4	0.956	SYNONYMOUS_CODING stau	TF binding site mE1_TFBS_cad
X	19863797	X_19863797_SNP [dm3] X_19969764_SNP [dm6]	A	C	5.019e^-4	0.956	DOWNSTREAM Nep3 INTERGENIC
2R	20363522	2R_20363522_SNP [dm3] 2R_24475999_SNP [dm6]	C	T	5.024e^-4	0.956	UTR_3_PRIME CG16837 DOWNSTREAM CG3494 INTRON CG13579
3L	13936533	3L_13936533_SNP [dm3] 3L_13943433_SNP [dm6]	T	A	5.042e^-4	0.956	INTRON CG32137
3L	2375867	3L_2375867_SNP [dm3] 3L_2375867_SNP [dm6]	G	T	5.046e^-4	0.956	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3L	2376490	3L_2376490_SNP [dm3] 3L_2376490_SNP [dm6]	G	A	5.046e^-4	0.956	UTR_3_PRIME CG15877 DOWNSTREAM CG9004
3L	2377380	3L_2377380_SNP [dm3] 3L_2377380_SNP [dm6]	T	G	5.046e^-4	0.956	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2377706	3L_2377706_SNP [dm3] 3L_2377706_SNP [dm6]	G	A	5.046e^-4	0.956	UTR_5_PRIME CG45186 UPSTREAM CG15877	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	2378077	3L_2378077_SNP [dm3] 3L_2378077_SNP [dm6]	A	T	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2378268	3L_2378268_SNP [dm3] 3L_2378268_SNP [dm6]	G	A	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2378329	3L_2378329_SNP [dm3] 3L_2378329_SNP [dm6]	T	A	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2378390	3L_2378390_SNP [dm3] 3L_2378390_SNP [dm6]	T	C	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378418	3L_2378418_MNP [dm3] 3L_2378418_MNP [dm6]	CTTT	AAAA	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378428	3L_2378428_DEL [dm3] 3L_2378428_DEL [dm6]	GCAG	G	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	2378530	3L_2378530_SNP [dm3] 3L_2378530_SNP [dm6]	C	T	5.046e^-4	0.956	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da
3L	2378572	3L_2378572_SNP [dm3] 3L_2378572_SNP [dm6]	A	T	5.046e^-4	0.956	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da
3L	2378805	3L_2378805_SNP [dm3] 3L_2378805_SNP [dm6]	T	C	5.046e^-4	0.956	UPSTREAM CG45186 INTRON CG45186
3L	2378806	3L_2378806_SNP [dm3] 3L_2378806_SNP [dm6]	C	A	5.046e^-4	0.956	UPSTREAM CG45186 INTRON CG45186
3R	22433986	3R_22433986_SNP [dm3] 3R_26608264_SNP [dm6]	C	A	5.046e^-4	0.956	EXON CR44951
3R	23515093	3R_23515093_SNP [dm3] 3R_27689371_SNP [dm6]	C	A	5.052e^-4	0.956	INTRON CG12880	TF binding site mE1_TFBS_chinmo
3L	22132990	3L_22132990_SNP [dm3] 3L_22139890_SNP [dm6]	A	T	5.057e^-4	0.956	INTRON olf413	TF binding site mE1_TFBS_inv
X	4414928	X_4414928_SNP [dm3] X_4520895_SNP [dm6]	A	G	5.085e^-4	0.956	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3L	12135841	3L_12135841_SNP [dm3] 3L_12142741_SNP [dm6]	C	A	5.090e^-4	0.956	SYNONYMOUS_CODING RhoGAP68F DOWNSTREAM CG5642	TF binding site mE1_TFBS_sens
3R	23270859	3R_23270859_SNP [dm3] 3R_27445137_SNP [dm6]	C	A	5.092e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22708279	3R_22708279_SNP [dm3] 3R_26882557_SNP [dm6]	C	T	5.094e^-4	0.956	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16546006	3L_16546006_SNP [dm3] 3L_16552906_SNP [dm6]	G	T	5.105e^-4	0.956	INTERGENIC
3R	3216093	3R_3216093_SNP [dm3] 3R_7390371_SNP [dm6]	A	T	5.119e^-4	0.956	INTERGENIC
3R	12024842	3R_12024842_SNP [dm3] 3R_16199120_SNP [dm6]	G	A	5.128e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6834184	2L_6834184_SNP [dm3] 2L_6834184_SNP [dm6]	G	C	5.140e^-4	0.956	INTRON sens-2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	7689422	2L_7689422_SNP [dm3] 2L_7689422_SNP [dm6]	A	T	5.149e^-4	0.956	UTR_3_PRIME CG18585 & 1 other
2L	3111095	2L_3111095_SNP [dm3] 2L_3111095_SNP [dm6]	C	G	5.159e^-4	0.956	DOWNSTREAM PpD6 INTRON toc
2L	7108775	2L_7108775_SNP [dm3] 2L_7108775_SNP [dm6]	A	T	5.167e^-4	0.956	INTRON Pvf3
2R	8167586	2R_8167586_SNP [dm3] 2R_12280081_SNP [dm6]	A	G	5.176e^-4	0.956	START_GAINED CG42700 UTR_5_PRIME CG42700	TF binding site mE1_TFBS_chinmo
3L	16546044	3L_16546044_SNP [dm3] 3L_16552944_SNP [dm6]	C	T	5.207e^-4	0.956	INTERGENIC
X	19083455	X_19083455_SNP [dm3] X_19189422_SNP [dm6]	A	T	5.212e^-4	0.956	SYNONYMOUS_CODING Mec2 UPSTREAM HP1D3csd	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11587897	3R_11587897_SNP [dm3] 3R_15762175_SNP [dm6]	T	G	5.219e^-4	0.956	UPSTREAM CG12784 INTERGENIC
3R	21683916	3R_21683916_SNP [dm3] 3R_25858194_SNP [dm6]	A	T	5.229e^-4	0.956	INTRON CG5890
3R	24450815	3R_24450815_SNP [dm3] 3R_28625093_SNP [dm6]	A	C	5.233e^-4	0.956	INTRON CG10011
3R	17712664	3R_17712664_SNP [dm3] 3R_21886942_SNP [dm6]	T	G	5.260e^-4	0.956	UPSTREAM CG6678 INTRON dnd
X	12089962	X_12089962_SNP [dm3] X_12195929_SNP [dm6]	G	A	5.263e^-4	0.956	SYNONYMOUS_CODING Ten-a UTR_5_PRIME Ten-a	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	22012858	2L_22012858_SNP [dm3] 2L_22012858_SNP [dm6]	A	C	5.277e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	25315851	3R_25315851_SNP [dm3] 3R_29490129_SNP [dm6]	A	C	5.292e^-4	0.956	SYNONYMOUS_CODING CG2006 UPSTREAM CG2321 DOWNSTREAM Spase12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14781210	2R_14781210_DEL [dm3] 2R_18893705_DEL [dm6]	ATCCA	A	5.331e^-4	0.956	INTRON sano
2R	14781240	2R_14781240_SNP [dm3] 2R_18893735_SNP [dm6]	T	A	5.331e^-4	0.956	INTRON sano
2L	14912734	2L_14912734_SNP [dm3] 2L_14912734_SNP [dm6]	T	C	5.357e^-4	0.956	INTRON CG42313
X	20848162	X_20848162_SNP [dm3] X_20977135_SNP [dm6]	T	C	5.362e^-4	0.956	INTERGENIC
X	16049119	X_16049119_SNP [dm3] X_16155086_SNP [dm6]	T	G	5.367e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4624065	X_4624065_SNP [dm3] X_4730032_SNP [dm6]	T	A	5.384e^-4	0.956	DOWNSTREAM Proc-R INTERGENIC
3R	25406369	3R_25406369_SNP [dm3] 3R_29580647_SNP [dm6]	C	T	5.391e^-4	0.956	INTERGENIC
3R	20833102	3R_20833102_SNP [dm3] 3R_25007380_SNP [dm6]	C	A	5.396e^-4	0.956	INTRON tnc
3R	24604142	3R_24604142_SNP [dm3] 3R_28778420_SNP [dm6]	G	T	5.396e^-4	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9756357	3L_9756357_SNP [dm3] 3L_9763257_SNP [dm6]	C	A	5.398e^-4	0.956	UPSTREAM CG8177 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	18806650	3R_18806650_SNP [dm3] 3R_22980928_SNP [dm6]	A	G	5.399e^-4	0.956	DOWNSTREAM Nha2 INTERGENIC
3L	9593594	3L_9593594_SNP [dm3] 3L_9600494_SNP [dm6]	T	A	5.404e^-4	0.956	UTR_3_PRIME CG3088 DOWNSTREAM CG3222
2R	6599408	2R_6599408_SNP [dm3] 2R_10711903_SNP [dm6]	A	C	5.410e^-4	0.956	SYNONYMOUS_CODING stan
2L	18377375	2L_18377375_SNP [dm3] 2L_18377375_SNP [dm6]	G	A	5.411e^-4	0.956	INTRON Fas3
3L	16546135	3L_16546135_SNP [dm3] 3L_16553035_SNP [dm6]	G	A	5.421e^-4	0.956	INTERGENIC
2L	4934833	2L_4934833_SNP [dm3] 2L_4934833_SNP [dm6]	A	C	5.447e^-4	0.956	SPLICE_SITE_REGION hoe2 INTRON hoe2
2L	299415	2L_299415_SNP [dm3] 2L_299415_SNP [dm6]	A	C	5.474e^-4	0.956	SYNONYMOUS_CODING Pi3K21B	TF binding site mE1_TFBS_cad
2L	10315618	2L_10315618_SNP [dm3] 2L_10315618_SNP [dm6]	A	G	5.507e^-4	0.956	SYNONYMOUS_CODING CG4972	TF binding site mE1_TFBS_sens
X	11949653	X_11949653_SNP [dm3] X_12055620_SNP [dm6]	A	G	5.549e^-4	0.956	SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
X	21896914	X_21896914_SNP [dm3] X_22495078_SNP [dm6]	C	T	5.583e^-4	0.956	INTRON l_1_G0196
2R	14340357	2R_14340357_SNP [dm3] 2R_18452852_SNP [dm6]	C	T	5.587e^-4	0.956	SYNONYMOUS_CODING CG17669 DOWNSTREAM CG5190	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	17327068	3L_17327068_SNP [dm3] 3L_17333968_SNP [dm6]	A	T	5.588e^-4	0.956	UPSTREAM CR44563 INTERGENIC
3R	15460729	3R_15460729_SNP [dm3] 3R_19635007_SNP [dm6]	G	C	5.588e^-4	0.956	UTR_5_PRIME CG34138 INTRON subdued
3R	15460747	3R_15460747_SNP [dm3] 3R_19635025_SNP [dm6]	A	G	5.588e^-4	0.956	SYNONYMOUS_CODING CG34138 INTRON subdued
3L	9867800	3L_9867800_SNP [dm3] 3L_9874700_SNP [dm6]	T	A	5.614e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9867818	3L_9867818_SNP [dm3] 3L_9874718_SNP [dm6]	T	A	5.614e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6005020	2L_6005020_SNP [dm3] 2L_6005020_SNP [dm6]	T	A	5.617e^-4	0.956	SYNONYMOUS_CODING Gal EXON CR43866	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10742270	X_10742270_SNP [dm3] X_10848237_SNP [dm6]	G	A	5.624e^-4	0.956	NON_SYNONYMOUS_CODING CG17333 UPSTREAM CG2202	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	7544710	2L_7544710_SNP [dm3] 2L_7544710_SNP [dm6]	G	T	5.645e^-4	0.956	UPSTREAM RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2L	21811541	2L_21811541_SNP [dm3] 2L_21811541_SNP [dm6]	T	A	5.670e^-4	0.956	INTERGENIC
3L	22499588	3L_22499588_SNP [dm3] 3L_22506488_SNP [dm6]	T	C	5.674e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5024825	2L_5024825_SNP [dm3] 2L_5024825_SNP [dm6]	T	G	5.685e^-4	0.956	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5631596	3L_5631596_INS [dm3] 3L_5638496_INS [dm6]	C	CAAGGCAC	5.685e^-4	0.956	INTRON Blimp-1
3L	5631621	3L_5631621_SNP [dm3] 3L_5638521_SNP [dm6]	G	A	5.685e^-4	0.956	INTRON Blimp-1
3L	2619344	3L_2619344_SNP [dm3] 3L_2619344_SNP [dm6]	T	G	5.693e^-4	0.956	INTRON Pxn
3R	15846932	3R_15846932_SNP [dm3] 3R_20021210_SNP [dm6]	T	A	5.710e^-4	0.956	START_GAINED CG4433 UTR_5_PRIME CG4433 UPSTREAM psidin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	16826056	3L_16826056_SNP [dm3] 3L_16832956_SNP [dm6]	A	G	5.717e^-4	0.956	INTERGENIC
2L	2869273	2L_2869273_SNP [dm3] 2L_2869273_SNP [dm6]	T	A	5.721e^-4	0.956	UPSTREAM CG8813 DOWNSTREAM CG2991 INTRON CG31694	TF binding site mE1_TFBS_cad
3R	25784366	3R_25784366_SNP [dm3] 3R_29958644_SNP [dm6]	T	A	5.739e^-4	0.956	INTRON TkR99D
2R	7897599	2R_7897599_SNP [dm3] 2R_12010094_SNP [dm6]	T	G	5.772e^-4	0.956	INTRON otk	regulatory region REDfly_CRMs
3R	21677317	3R_21677317_SNP [dm3] 3R_25851595_SNP [dm6]	C	A	5.778e^-4	0.956	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	8894401	2L_8894401_SNP [dm3] 2L_8894401_SNP [dm6]	G	C	5.803e^-4	0.956	INTERGENIC
3L	8102123	3L_8102123_SNP [dm3] 3L_8109023_SNP [dm6]	C	T	5.806e^-4	0.956	UPSTREAM fan DOWNSTREAM Ect4 INTERGENIC	TF binding site mE1_TFBS_bab1
3L	8831345	3L_8831345_SNP [dm3] 3L_8838245_SNP [dm6]	A	G	5.816e^-4	0.956	SYNONYMOUS_CODING CG32026 INTRON dally	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3L	7902487	3L_7902487_SNP [dm3] 3L_7909387_SNP [dm6]	A	C	5.820e^-4	0.956	UPSTREAM pbl INTRON pbl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	1760175	2L_1760175_SNP [dm3] 2L_1760175_SNP [dm6]	G	A	5.829e^-4	0.956	INTERGENIC
3L	9867830	3L_9867830_SNP [dm3] 3L_9874730_SNP [dm6]	C	T	5.831e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	8364355	3R_8364355_SNP [dm3] 3R_12538633_SNP [dm6]	A	T	5.845e^-4	0.956	INTRON Octbeta3R
3L	8729211	3L_8729211_SNP [dm3] 3L_8736111_SNP [dm6]	C	G	5.860e^-4	0.956	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3R	24604141	3R_24604141_SNP [dm3] 3R_28778419_SNP [dm6]	A	G	5.861e^-4	0.956	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11815227	3R_11815227_SNP [dm3] 3R_15989505_SNP [dm6]	A	G	5.896e^-4	0.956	INTRON srp & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
X	5555092	X_5555092_DEL [dm3] X_5661059_DEL [dm6]	CGGGTTC	C	5.904e^-4	0.956	CODON_DELETION CG42265	TF binding site mE1_TFBS_chinmo
3R	13599878	3R_13599878_SNP [dm3] 3R_17774156_SNP [dm6]	T	G	5.909e^-4	0.956	SYNONYMOUS_CODING CG43102 INTRON CG43102	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15484252	3L_15484252_SNP [dm3] 3L_15491152_SNP [dm6]	A	T	5.918e^-4	0.956	INTERGENIC
3L	8359085	3L_8359085_SNP [dm3] 3L_8365985_SNP [dm6]	G	C	5.925e^-4	0.956	INTERGENIC
3L	3918166	3L_3918166_SNP [dm3] 3L_3918166_SNP [dm6]	A	T	5.938e^-4	0.956	INTRON Eip63F-1
3L	9692454	3L_9692454_SNP [dm3] 3L_9699354_SNP [dm6]	C	T	5.972e^-4	0.956	SYNONYMOUS_CODING UbcD4	TF binding site mE1_TFBS_cad
3R	20605061	3R_20605061_SNP [dm3] 3R_24779339_SNP [dm6]	C	T	5.976e^-4	0.956	UPSTREAM CG42331 INTRON CG42331
2L	7108956	2L_7108956_SNP [dm3] 2L_7108956_SNP [dm6]	C	T	5.977e^-4	0.956	INTRON Pvf3
2R	16091687	2R_16091687_SNP [dm3] 2R_20204182_SNP [dm6]	A	C	6.017e^-4	0.956	INTERGENIC
3R	26072167	3R_26072167_SNP [dm3] 3R_30246445_SNP [dm6]	A	T	6.036e^-4	0.956	INTRON CG9733
2R	11290090	2R_11290090_SNP [dm3] 2R_15402585_SNP [dm6]	G	T	6.052e^-4	0.956	INTRON CG43729
2R	11290422	2R_11290422_SNP [dm3] 2R_15402917_SNP [dm6]	G	C	6.052e^-4	0.956	INTRON CG43729
X	4067000	X_4067000_SNP [dm3] X_4172967_SNP [dm6]	G	C	6.053e^-4	0.956	INTRON Fas2
3L	2457246	3L_2457246_SNP [dm3] 3L_2457246_SNP [dm6]	G	C	6.061e^-4	0.956	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12885161	3R_12885161_SNP [dm3] 3R_17059439_SNP [dm6]	G	C	6.069e^-4	0.956	INTRON Dad	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8607629	X_8607629_SNP [dm3] X_8713596_SNP [dm6]	A	T	6.073e^-4	0.956	SPLICE_SITE_REGION CG2004 INTRON CG2004	TF binding site mE1_TFBS_inv
3R	12025149	3R_12025149_SNP [dm3] 3R_16199427_SNP [dm6]	A	G	6.081e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	12025183	3R_12025183_SNP [dm3] 3R_16199461_SNP [dm6]	C	G	6.081e^-4	0.956	SYNONYMOUS_CODING CG6126	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	6966977	X_6966977_SNP [dm3] X_7072944_SNP [dm6]	C	A	6.094e^-4	0.956	DOWNSTREAM CG4607 INTERGENIC	TF binding site BDTNP1_TFBS_gt mE1_TFBS_HSA
3R	25482856	3R_25482856_SNP [dm3] 3R_29657134_SNP [dm6]	A	G	6.098e^-4	0.956	INTRON Dop1R2
X	5737615	X_5737615_SNP [dm3] X_5843582_SNP [dm6]	T	G	6.129e^-4	0.956	INTERGENIC
2R	11302319	2R_11302319_SNP [dm3] 2R_15414814_SNP [dm6]	A	G	6.138e^-4	0.956	INTRON CG43729
2L	1904995	2L_1904995_SNP [dm3] 2L_1904995_SNP [dm6]	C	T	6.142e^-4	0.956	INTRON CG7337
2R	10549787	2R_10549787_SNP [dm3] 2R_14662282_SNP [dm6]	A	T	6.150e^-4	0.956	INTERGENIC
3L	7401076	3L_7401076_SNP [dm3] 3L_7407976_SNP [dm6]	T	A	6.152e^-4	0.956	DOWNSTREAM CR44525 INTERGENIC
3R	3298558	3R_3298558_SNP [dm3] 3R_7472836_SNP [dm6]	T	G	6.166e^-4	0.956	SYNONYMOUS_CODING CG1142 UPSTREAM tRNA:V3b:84Dc DOWNSTREAM scaRNA:MeU5-C46	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6785434	2R_6785434_SNP [dm3] 2R_10897929_SNP [dm6]	A	G	6.229e^-4	0.956	UPSTREAM CG7712 DOWNSTREAM Rpb5 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_ttk
2R	17285189	2R_17285189_DEL [dm3] 2R_21397684_DEL [dm6]	AAT	G	6.233e^-4	0.956	INTRON Sdc
3L	22505058	3L_22505058_SNP [dm3] 3L_22511958_SNP [dm6]	C	T	6.242e^-4	0.956	DOWNSTREAM CR45429 INTERGENIC	transposable element FlyBase
3L	18479283	3L_18479283_SNP [dm3] 3L_18486183_SNP [dm6]	G	A	6.277e^-4	0.956	UTR_3_PRIME AstC-R2 DOWNSTREAM AstC-R2
3R	17314117	3R_17314117_SNP [dm3] 3R_21488395_SNP [dm6]	A	T	6.288e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	18940640	2R_18940640_SNP [dm3] 2R_23053117_SNP [dm6]	T	C	6.299e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	11643619	3L_11643619_SNP [dm3] 3L_11650519_SNP [dm6]	G	A	6.308e^-4	0.956	UTR_3_PRIME CG32085 DOWNSTREAM CG7339
2L	9634016	2L_9634016_SNP [dm3] 2L_9634016_SNP [dm6]	A	C	6.326e^-4	0.956	UPSTREAM Apoltp INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	24603167	3R_24603167_SNP [dm3] 3R_28777445_SNP [dm6]	G	A	6.329e^-4	0.956	EXON CR44952
2R	12410011	2R_12410011_SNP [dm3] 2R_16522506_SNP [dm6]	G	A	6.332e^-4	0.956	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3R	14616574	3R_14616574_SNP [dm3] 3R_18790852_SNP [dm6]	G	T	6.334e^-4	0.956	INTRON CG7720
3R	18280353	3R_18280353_SNP [dm3] 3R_22454631_SNP [dm6]	T	C	6.346e^-4	0.956	INTRON CG34376	TF binding site mE1_TFBS_cad
2L	2516635	2L_2516635_SNP [dm3] 2L_2516635_SNP [dm6]	T	A	6.352e^-4	0.956	DOWNSTREAM CG3528 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	16821832	3L_16821832_SNP [dm3] 3L_16828732_SNP [dm6]	C	A	6.399e^-4	0.956	UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16821854	3L_16821854_SNP [dm3] 3L_16828754_SNP [dm6]	T	C	6.399e^-4	0.956	START_GAINED CG13024 UTR_5_PRIME CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12143191	2R_12143191_SNP [dm3] 2R_16255686_SNP [dm6]	A	G	6.405e^-4	0.956	INTRON CngA
2L	8355593	2L_8355593_SNP [dm3] 2L_8355593_SNP [dm6]	A	T	6.408e^-4	0.956	DOWNSTREAM CG7627 & 1 other INTERGENIC
2L	9650120	2L_9650120_SNP [dm3] 2L_9650120_SNP [dm6]	A	G	6.418e^-4	0.956	NON_SYNONYMOUS_CODING Apoltp
3R	18395117	3R_18395117_INS [dm3] 3R_22569395_INS [dm6]	T	TT	6.437e^-4	0.956	UPSTREAM CG33110 INTERGENIC
3R	20605100	3R_20605100_SNP [dm3] 3R_24779378_SNP [dm6]	C	T	6.448e^-4	0.956	UPSTREAM CG42331 INTRON CG42331	TF binding site mE1_TFBS_chinmo
3L	2274008	3L_2274008_SNP [dm3] 3L_2274008_SNP [dm6]	A	G	6.452e^-4	0.956	DOWNSTREAM tRNA:CR32303 INTERGENIC
3R	20461031	3R_20461031_SNP [dm3] 3R_24635309_SNP [dm6]	G	A	6.453e^-4	0.956	UTR_3_PRIME puf UPSTREAM CG43222 DOWNSTREAM atl
2L	2677209	2L_2677209_SNP [dm3] 2L_2677209_SNP [dm6]	T	A	6.455e^-4	0.956	UPSTREAM CG31690 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	487271	3L_487271_SNP [dm3] 3L_487271_SNP [dm6]	A	G	6.456e^-4	0.956	INTRON klar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6653197	2R_6653197_SNP [dm3] 2R_10765692_SNP [dm6]	C	G	6.458e^-4	0.956	INTRON CG33144
2R	15543931	2R_15543931_SNP [dm3] 2R_19656426_SNP [dm6]	T	G	6.482e^-4	0.956	EXON CR44214
2L	8958797	2L_8958797_DEL [dm3] 2L_8958797_DEL [dm6]	AGTTAA	A	6.489e^-4	0.956	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_z
2L	8958810	2L_8958810_INS [dm3] 2L_8958810_INS [dm6]	T	TGTAT	6.489e^-4	0.956	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_z
2L	8958863	2L_8958863_SNP [dm3] 2L_8958863_SNP [dm6]	C	T	6.489e^-4	0.956	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886
3R	18718649	3R_18718649_SNP [dm3] 3R_22892927_SNP [dm6]	A	G	6.496e^-4	0.956	INTERGENIC
3R	13555385	3R_13555385_SNP [dm3] 3R_17729663_SNP [dm6]	T	C	6.506e^-4	0.956	SYNONYMOUS_CODING Lgr1
X	8014885	X_8014885_SNP [dm3] X_8120852_SNP [dm6]	C	A	6.514e^-4	0.956	SYNONYMOUS_CODING CG2260 DOWNSTREAM cyr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Ubx
3L	19493132	3L_19493132_SNP [dm3] 3L_19500032_SNP [dm6]	C	G	6.522e^-4	0.956	DOWNSTREAM CG9452 INTRON CG9451
3R	21683915	3R_21683915_SNP [dm3] 3R_25858193_SNP [dm6]	C	T	6.524e^-4	0.956	INTRON CG5890
3R	17307661	3R_17307661_SNP [dm3] 3R_21481939_SNP [dm6]	T	C	6.528e^-4	0.956	UPSTREAM CG7922 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu
3R	15399255	3R_15399255_SNP [dm3] 3R_19573533_SNP [dm6]	G	A	6.541e^-4	0.956	INTRON Dys
3L	18131764	3L_18131764_SNP [dm3] 3L_18138664_SNP [dm6]	G	C	6.547e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18131766	3L_18131766_SNP [dm3] 3L_18138666_SNP [dm6]	G	A	6.547e^-4	0.956	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15228179	3R_15228179_SNP [dm3] 3R_19402457_SNP [dm6]	A	T	6.550e^-4	0.956	UPSTREAM CG5316 INTRON Ino80	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
3L	1012596	3L_1012596_SNP [dm3] 3L_1012596_SNP [dm6]	A	G	6.553e^-4	0.956	INTRON trio
3L	2711806	3L_2711806_SNP [dm3] 3L_2711806_SNP [dm6]	T	A	6.593e^-4	0.956	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	8937933	2L_8937933_SNP [dm3] 2L_8937933_SNP [dm6]	A	T	6.600e^-4	0.956	INTRON Tsp29Fb	TF binding site BDTNP1_TFBS_dl
2L	8945997	2L_8945997_DEL [dm3] 2L_8945997_DEL [dm6]	GG	G	6.600e^-4	0.956	INTRON C1GalTA
3L	3578602	3L_3578602_SNP [dm3] 3L_3578602_SNP [dm6]	G	C	6.605e^-4	0.956	INTRON Eip63E	TF binding site BDTNP1_TFBS_prd
3L	15563053	3L_15563053_SNP [dm3] 3L_15569953_SNP [dm6]	A	T	6.627e^-4	0.956	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	15563066	3L_15563066_SNP [dm3] 3L_15569966_SNP [dm6]	T	C	6.627e^-4	0.956	INTRON CG6498	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17810753	2R_17810753_SNP [dm3] 2R_21923248_SNP [dm6]	T	C	6.637e^-4	0.956	INTRON Fili
3R	26176223	3R_26176223_SNP [dm3] 3R_30350501_SNP [dm6]	C	T	6.641e^-4	0.956	INTRON hdc
X	21900205	X_21900205_SNP [dm3] X_22498369_SNP [dm6]	T	C	6.664e^-4	0.956	SYNONYMOUS_CODING l_1_G0196	TF binding site mE1_TFBS_sens
2L	20802775	2L_20802775_SNP [dm3] 2L_20802775_SNP [dm6]	T	G	6.670e^-4	0.956	INTRON CG9328	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	25309134	3R_25309134_SNP [dm3] 3R_29483412_SNP [dm6]	G	T	6.676e^-4	0.956	INTRON Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8070051	2L_8070051_SNP [dm3] 2L_8070051_SNP [dm6]	G	C	6.676e^-4	0.956	SYNONYMOUS_CODING poe
2L	2096312	2L_2096312_SNP [dm3] 2L_2096312_SNP [dm6]	C	T	6.689e^-4	0.956	INTRON dpr3
3L	6985860	3L_6985860_SNP [dm3] 3L_6992760_SNP [dm6]	G	A	6.690e^-4	0.956	SYNONYMOUS_CODING bin	TF binding site mE1_TFBS_cad
3L	2433583	3L_2433583_SNP [dm3] 3L_2433583_SNP [dm6]	G	C	6.694e^-4	0.956	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20553753	3R_20553753_SNP [dm3] 3R_24728031_SNP [dm6]	A	G	6.707e^-4	0.956	SYNONYMOUS_CODING tok
3R	14616451	3R_14616451_SNP [dm3] 3R_18790729_SNP [dm6]	A	G	6.717e^-4	0.956	INTRON CG7720
X	4718557	X_4718557_SNP [dm3] X_4824524_SNP [dm6]	A	T	6.730e^-4	0.956	INTERGENIC
3R	22108529	3R_22108529_SNP [dm3] 3R_26282807_SNP [dm6]	A	G	6.757e^-4	0.956	INTERGENIC
3R	24750944	3R_24750944_SNP [dm3] 3R_28925222_SNP [dm6]	A	G	6.782e^-4	0.956	UTR_3_PRIME CG14521 DOWNSTREAM CG11828
3R	5077340	3R_5077340_SNP [dm3] 3R_9251618_SNP [dm6]	A	G	6.784e^-4	0.956	UPSTREAM St2 DOWNSTREAM CG8420 INTERGENIC
2L	6595130	2L_6595130_SNP [dm3] 2L_6595130_SNP [dm6]	A	C	6.806e^-4	0.956	INTRON CG11319	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13396186	X_13396186_SNP [dm3] X_13502153_SNP [dm6]	C	T	6.848e^-4	0.956	INTRON Neto
3R	24607383	3R_24607383_SNP [dm3] 3R_28781661_SNP [dm6]	A	G	6.854e^-4	0.956	INTERGENIC
3L	7053290	3L_7053290_SNP [dm3] 3L_7060190_SNP [dm6]	C	T	6.860e^-4	0.956	UTR_3_PRIME CG8641
2L	1201411	2L_1201411_SNP [dm3] 2L_1201411_SNP [dm6]	C	T	6.862e^-4	0.956	DOWNSTREAM CG43349 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11168086	3L_11168086_SNP [dm3] 3L_11174986_SNP [dm6]	T	C	6.889e^-4	0.956	SYNONYMOUS_CODING CG14142 UTR_3_PRIME CG14142
3L	2456823	3L_2456823_SNP [dm3] 3L_2456823_SNP [dm6]	C	A	6.935e^-4	0.956	UTR_5_PRIME CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	19329855	3R_19329855_SNP [dm3] 3R_23504133_SNP [dm6]	C	T	6.945e^-4	0.956	INTERGENIC
2R	7697628	2R_7697628_SNP [dm3] 2R_11810123_SNP [dm6]	G	A	6.949e^-4	0.956	NON_SYNONYMOUS_CODING ths
X	5698311	X_5698311_SNP [dm3] X_5804278_SNP [dm6]	T	G	6.959e^-4	0.956	UPSTREAM Cpr5C INTERGENIC
3R	13556234	3R_13556234_SNP [dm3] 3R_17730512_SNP [dm6]	C	T	6.961e^-4	0.956	INTRON Lgr1
3L	6050460	3L_6050460_SNP [dm3] 3L_6057360_SNP [dm6]	T	C	6.966e^-4	0.956	DOWNSTREAM tan INTERGENIC
2L	7842469	2L_7842469_SNP [dm3] 2L_7842469_SNP [dm6]	T	G	6.976e^-4	0.956	INTERGENIC
3L	1323197	3L_1323197_SNP [dm3] 3L_1323197_SNP [dm6]	G	A	6.981e^-4	0.956	UPSTREAM CG9184 INTRON Myo61F EXON CR45166	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	22005060	2L_22005060_SNP [dm3] 2L_22005060_SNP [dm6]	T	C	6.997e^-4	0.956	INTERGENIC	transposable element FlyBase
3L	2462802	3L_2462802_SNP [dm3] 3L_2462802_SNP [dm6]	G	A	7.004e^-4	0.956	UPSTREAM CG45186 INTRON CG45186
3L	9770686	3L_9770686_SNP [dm3] 3L_9777586_SNP [dm6]	T	A	7.033e^-4	0.956	INTRON CG8177
3R	5095241	3R_5095241_SNP [dm3] 3R_9269519_SNP [dm6]	G	T	7.036e^-4	0.956	NON_SYNONYMOUS_CODING Vps16A
2R	20510652	2R_20510652_DEL [dm3] 2R_24623129_DEL [dm6]	AGGGGAGTGACCAA...	A	7.069e^-4	0.956	INTRON CG13594
3R	5645852	3R_5645852_SNP [dm3] 3R_9820130_SNP [dm6]	C	T	7.098e^-4	0.956	UPSTREAM CG9458 DOWNSTREAM CG42857 INTERGENIC
3L	3575645	3L_3575645_SNP [dm3] 3L_3575645_SNP [dm6]	A	G	7.105e^-4	0.956	INTRON Eip63E
X	21889635	X_21889635_SNP [dm3] X_22487799_SNP [dm6]	C	T	7.117e^-4	0.956	DOWNSTREAM CR43493 & 1 other INTRON l_1_G0196
3L	18219885	3L_18219885_MNP [dm3] 3L_18226785_MNP [dm6]	TAC	CGT	7.129e^-4	0.956	INTERGENIC
3L	18219898	3L_18219898_INS [dm3] 3L_18226798_INS [dm6]	T	TGTT	7.129e^-4	0.956	INTERGENIC
3L	18219912	3L_18219912_SNP [dm3] 3L_18226812_SNP [dm6]	C	A	7.129e^-4	0.956	INTERGENIC
3L	18219917	3L_18219917_DEL [dm3] 3L_18226817_DEL [dm6]	CA	C	7.129e^-4	0.956	INTERGENIC
3L	18219921	3L_18219921_SNP [dm3] 3L_18226821_SNP [dm6]	T	A	7.129e^-4	0.956	INTERGENIC
3L	18219925	3L_18219925_SNP [dm3] 3L_18226825_SNP [dm6]	A	G	7.129e^-4	0.956	INTERGENIC
3L	18219931	3L_18219931_SNP [dm3] 3L_18226831_SNP [dm6]	T	A	7.129e^-4	0.956	INTERGENIC
2R	6486282	2R_6486282_SNP [dm3] 2R_10598777_SNP [dm6]	C	A	7.141e^-4	0.956	INTRON psq
3R	27280587	3R_27280587_INS [dm3] 3R_31454865_INS [dm6]	T	TT	7.142e^-4	0.956	INTRON Gprk2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	980494	3L_980494_SNP [dm3] 3L_980494_SNP [dm6]	C	T	7.153e^-4	0.956	UTR_3_PRIME Glut1 INTRON Glut1
2L	9809516	2L_9809516_SNP [dm3] 2L_9809516_SNP [dm6]	T	A	7.171e^-4	0.956	INTRON nAChRalpha6
3R	21637800	3R_21637800_SNP [dm3] 3R_25812078_SNP [dm6]	T	A	7.180e^-4	0.956	SYNONYMOUS_CODING CG17770 UTR_5_PRIME Acam UPSTREAM Acam DOWNSTREAM CG5024
2L	3384833	2L_3384833_SNP [dm3] 2L_3384833_SNP [dm6]	T	C	7.196e^-4	0.956	INTERGENIC
3R	14285733	3R_14285733_SNP [dm3] 3R_18460011_SNP [dm6]	G	C	7.200e^-4	0.956	INTRON fru
3L	11981693	3L_11981693_SNP [dm3] 3L_11988593_SNP [dm6]	C	T	7.205e^-4	0.956	SPLICE_SITE_REGION CG6938 INTRON CG6938
3L	11981924	3L_11981924_SNP [dm3] 3L_11988824_SNP [dm6]	T	C	7.205e^-4	0.956	SPLICE_SITE_REGION CG6938 INTRON CG6938
2R	6711035	2R_6711035_SNP [dm3] 2R_10823530_SNP [dm6]	G	T	7.214e^-4	0.956	START_GAINED CG12325 UTR_5_PRIME CG12325 UPSTREAM CG12325 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5737613	X_5737613_SNP [dm3] X_5843580_SNP [dm6]	T	A	7.219e^-4	0.956	INTERGENIC
X	6100584	X_6100584_SNP [dm3] X_6206551_SNP [dm6]	C	A	7.226e^-4	0.956	INTERGENIC
2R	12410017	2R_12410017_SNP [dm3] 2R_16522512_SNP [dm6]	C	A	7.229e^-4	0.956	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3L	7312125	3L_7312125_INS [dm3] 3L_7319025_INS [dm6]	A	AG	7.232e^-4	0.956	INTERGENIC
2L	323506	2L_323506_DEL [dm3] 2L_323506_DEL [dm6]	CGGTTTAAACGTATTTCTAT...	C	7.250e^-4	0.956	DOWNSTREAM CG33127 INTRON Plc21C	TF binding site mE1_TFBS_cad
X	14325056	X_14325056_SNP [dm3] X_14431023_SNP [dm6]	T	C	7.261e^-4	0.956	INTRON dpr8
3L	14612952	3L_14612952_SNP [dm3] 3L_14619852_SNP [dm6]	T	C	7.272e^-4	0.956	UTR_5_PRIME shd INTRON shd
3L	14612957	3L_14612957_SNP [dm3] 3L_14619857_SNP [dm6]	C	G	7.272e^-4	0.956	START_GAINED shd UTR_5_PRIME shd INTRON shd
3R	15063710	3R_15063710_SNP [dm3] 3R_19237988_SNP [dm6]	G	A	7.279e^-4	0.956	SYNONYMOUS_CODING unc79	TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19413535	2L_19413535_SNP [dm3] 2L_19413535_SNP [dm6]	G	C	7.331e^-4	0.956	INTRON Pax	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8714922	2L_8714922_MNP [dm3] 2L_8714922_MNP [dm6]	AGTT	TACC	7.351e^-4	0.956	UPSTREAM raw INTRON raw
2L	13604780	2L_13604780_SNP [dm3] 2L_13604780_SNP [dm6]	T	A	7.357e^-4	0.956	INTRON kuz
2L	17704419	2L_17704419_SNP [dm3] 2L_17704419_SNP [dm6]	T	G	7.357e^-4	0.956	UPSTREAM CG43231 INTRON CadN
2R	15107717	2R_15107717_SNP [dm3] 2R_19220212_SNP [dm6]	G	T	7.357e^-4	0.956	INTRON hppy
2R	7544168	2R_7544168_SNP [dm3] 2R_11656663_SNP [dm6]	C	G	7.357e^-4	0.956	DOWNSTREAM CG13198 INTRON Roc2
3L	12240859	3L_12240859_DEL [dm3] 3L_12247759_DEL [dm6]	AGGACCCTCA	A	7.357e^-4	0.956	INTRON app
3L	14650012	3L_14650012_SNP [dm3] 3L_14656912_SNP [dm6]	T	G	7.357e^-4	0.956	INTRON dlp	TF binding site mE1_TFBS_cad
3L	18219920	3L_18219920_SNP [dm3] 3L_18226820_SNP [dm6]	T	A	7.357e^-4	0.956	INTERGENIC
3L	18219955	3L_18219955_SNP [dm3] 3L_18226855_SNP [dm6]	T	C	7.357e^-4	0.956	INTERGENIC
3L	18219957	3L_18219957_SNP [dm3] 3L_18226857_SNP [dm6]	T	C	7.357e^-4	0.956	INTERGENIC
3L	7746425	3L_7746425_SNP [dm3] 3L_7753325_SNP [dm6]	G	A	7.357e^-4	0.956	INTRON CG32373
3R	26635665	3R_26635665_SNP [dm3] 3R_30809943_SNP [dm6]	G	A	7.357e^-4	0.956	INTRON cindr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5046821	3R_5046821_SNP [dm3] 3R_9221099_SNP [dm6]	T	A	7.357e^-4	0.956	INTRON pum	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	5048416	3R_5048416_INS [dm3] 3R_9222694_INS [dm6]	T	TTTACT	7.357e^-4	0.956	INTRON pum
3R	5049891	3R_5049891_DEL [dm3] 3R_9224169_DEL [dm6]	GTCT	AC	7.357e^-4	0.956	INTRON pum
3R	5051571	3R_5051571_SNP [dm3] 3R_9225849_SNP [dm6]	G	A	7.357e^-4	0.956	INTRON pum	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sbb
3R	5060184	3R_5060184_SNP [dm3] 3R_9234462_SNP [dm6]	C	T	7.357e^-4	0.956	UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
3R	5080200	3R_5080200_SNP [dm3] 3R_9254478_SNP [dm6]	G	A	7.357e^-4	0.956	UPSTREAM CG16734 DOWNSTREAM St2 EXON CR16735	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	5082413	3R_5082413_SNP [dm3] 3R_9256691_SNP [dm6]	G	A	7.357e^-4	0.956	SYNONYMOUS_CODING CG16734 UTR_3_PRIME CG16736	TF binding site mE1_TFBS_sens
3R	5082803	3R_5082803_SNP [dm3] 3R_9257081_SNP [dm6]	T	C	7.357e^-4	0.956	NON_SYNONYMOUS_CODING CG16736 DOWNSTREAM CG9740 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
3R	5092577	3R_5092577_SNP [dm3] 3R_9266855_SNP [dm6]	T	C	7.357e^-4	0.956	UTR_5_PRIME Aats-trp UPSTREAM Vps16A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
3R	5095965	3R_5095965_SNP [dm3] 3R_9270243_SNP [dm6]	A	C	7.357e^-4	0.956	DOWNSTREAM Vps16A INTERGENIC
3R	5096667	3R_5096667_SNP [dm3] 3R_9270945_SNP [dm6]	C	T	7.357e^-4	0.956	DOWNSTREAM Vps16A INTERGENIC
3R	5096908	3R_5096908_SNP [dm3] 3R_9271186_SNP [dm6]	T	C	7.357e^-4	0.956	DOWNSTREAM Vps16A INTERGENIC
2R	12050383	2R_12050383_SNP [dm3] 2R_16162878_SNP [dm6]	C	T	7.371e^-4	0.956	INTRON lbk
3R	14809074	3R_14809074_SNP [dm3] 3R_18983352_SNP [dm6]	C	T	7.393e^-4	0.956	SYNONYMOUS_CODING snRNP-U1-C UPSTREAM gukh DOWNSTREAM dnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	5882625	X_5882625_SNP [dm3] X_5988592_SNP [dm6]	C	A	7.401e^-4	0.956	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	9681218	3L_9681218_SNP [dm3] 3L_9688118_SNP [dm6]	T	A	7.410e^-4	0.956	INTRON CG6767	TF binding site BDTNP1_TFBS_dl
2L	9637440	2L_9637440_SNP [dm3] 2L_9637440_SNP [dm6]	T	C	7.414e^-4	0.956	INTRON Apoltp
3R	25202144	3R_25202144_SNP [dm3] 3R_29376422_SNP [dm6]	G	T	7.417e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20720316	X_20720316_SNP [dm3] X_20849289_SNP [dm6]	T	C	7.428e^-4	0.956	INTRON shakB
3L	10928348	3L_10928348_SNP [dm3] 3L_10935248_SNP [dm6]	G	T	7.440e^-4	0.956	INTERGENIC
X	18351806	X_18351806_SNP [dm3] X_18457773_SNP [dm6]	A	G	7.444e^-4	0.956	INTRON CG32547
X	20229584	X_20229584_SNP [dm3] X_20358557_SNP [dm6]	C	G	7.450e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18154389	2R_18154389_SNP [dm3] 2R_22266884_SNP [dm6]	A	T	7.454e^-4	0.956	INTRON dve	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	20801425	2L_20801425_SNP [dm3] 2L_20801425_SNP [dm6]	T	C	7.459e^-4	0.956	INTRON CG9328	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7585631	2R_7585631_SNP [dm3] 2R_11698126_SNP [dm6]	C	T	7.466e^-4	0.956	DOWNSTREAM CG13197 & 1 other INTERGENIC
X	8709858	X_8709858_INS [dm3] X_8815825_INS [dm6]	G	GG	7.482e^-4	0.956	INTERGENIC
2R	13300481	2R_13300481_SNP [dm3] 2R_17412976_SNP [dm6]	C	T	7.484e^-4	0.956	SYNONYMOUS_CODING Prosalpha5 DOWNSTREAM cnk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2R	9555346	2R_9555346_SNP [dm3] 2R_13667841_SNP [dm6]	T	C	7.485e^-4	0.956	UTR_5_PRIME CG18368 DOWNSTREAM CG13337 INTRON fas	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	18406806	2R_18406806_DEL [dm3] 2R_22519301_DEL [dm6]	TGGCTACAT	T	7.493e^-4	0.956	INTRON px
2L	16546424	2L_16546424_SNP [dm3] 2L_16546424_SNP [dm6]	A	T	7.494e^-4	0.956	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	16546435	2L_16546435_DEL [dm3] 2L_16546435_DEL [dm6]	TGTATTTA	T	7.494e^-4	0.956	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	16546466	2L_16546466_SNP [dm3] 2L_16546466_SNP [dm6]	T	A	7.494e^-4	0.956	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	16546475	2L_16546475_DEL [dm3] 2L_16546475_DEL [dm6]	TT	T	7.494e^-4	0.956	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	16546485	2L_16546485_SNP [dm3] 2L_16546485_SNP [dm6]	A	G	7.494e^-4	0.956	INTRON CG42389	TF binding site BDTNP1_TFBS_dl
2L	1337484	2L_1337484_SNP [dm3] 2L_1337484_SNP [dm6]	T	C	7.554e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_inv
2R	12438280	2R_12438280_SNP [dm3] 2R_16550775_SNP [dm6]	G	C	7.569e^-4	0.956	INTERGENIC
2L	15223551	2L_15223551_SNP [dm3] 2L_15223551_SNP [dm6]	T	A	7.584e^-4	0.956	INTERGENIC
2L	976725	2L_976725_SNP [dm3] 2L_976725_SNP [dm6]	A	G	7.594e^-4	0.956	INTERGENIC
2L	21723191	2L_21723191_INS [dm3] 2L_21723191_INS [dm6]	T	TTTTT	7.598e^-4	0.956	INTRON CG31619
2R	7307032	2R_7307032_SNP [dm3] 2R_11419527_SNP [dm6]	A	G	7.600e^-4	0.956	INTRON Drip
2R	7307036	2R_7307036_SNP [dm3] 2R_11419531_SNP [dm6]	A	T	7.600e^-4	0.956	INTRON Drip
3R	19540549	3R_19540549_SNP [dm3] 3R_23714827_SNP [dm6]	T	G	7.621e^-4	0.956	INTRON nau
3R	19540552	3R_19540552_SNP [dm3] 3R_23714830_SNP [dm6]	C	T	7.621e^-4	0.956	INTRON nau
3R	21628820	3R_21628820_SNP [dm3] 3R_25803098_SNP [dm6]	C	A	7.629e^-4	0.956	INTERGENIC
3R	24607203	3R_24607203_SNP [dm3] 3R_28781481_SNP [dm6]	C	A	7.636e^-4	0.956	INTERGENIC
X	4555291	X_4555291_DEL [dm3] X_4661258_DEL [dm6]	ACCTCAGCCGAA...	A	7.646e^-4	0.956	INTRON CG3009
2L	20489210	2L_20489210_DEL [dm3] 2L_20489210_DEL [dm6]	TCGCAGACT	T	7.654e^-4	0.956	UPSTREAM CR45359 DOWNSTREAM CR45360 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	14388255	2R_14388255_DEL [dm3] 2R_18500750_DEL [dm6]	AA	A	7.654e^-4	0.956	INTERGENIC
3R	20504206	3R_20504206_SNP [dm3] 3R_24678484_SNP [dm6]	T	C	7.670e^-4	0.956	INTRON slo	TF binding site BDTNP1_TFBS_z
2R	9117871	2R_9117871_SNP [dm3] 2R_13230366_SNP [dm6]	G	A	7.682e^-4	0.956	UPSTREAM fsd & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11415006	3L_11415006_SNP [dm3] 3L_11421906_SNP [dm6]	G	A	7.684e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11776425	2L_11776425_SNP [dm3] 2L_11776425_SNP [dm6]	G	T	7.687e^-4	0.956	INTERGENIC
X	7699722	X_7699722_SNP [dm3] X_7805689_SNP [dm6]	A	C	7.697e^-4	0.956	INTERGENIC
3L	2781172	3L_2781172_SNP [dm3] 3L_2781172_SNP [dm6]	A	T	7.719e^-4	0.956	DOWNSTREAM Atg2 INTRON mRpS35	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_ttk
2R	8783694	2R_8783694_SNP [dm3] 2R_12896189_SNP [dm6]	T	C	7.720e^-4	0.956	INTRON vg	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19231569	2R_19231569_SNP [dm3] 2R_23344046_SNP [dm6]	C	T	7.722e^-4	0.956	SYNONYMOUS_CODING CG3502
3R	5059772	3R_5059772_SNP [dm3] 3R_9234050_SNP [dm6]	C	G	7.727e^-4	0.956	UTR_5_PRIME pum	TF binding site BDTNP1_TFBS_dl
2L	8958830	2L_8958830_SNP [dm3] 2L_8958830_SNP [dm6]	C	A	7.727e^-4	0.956	UPSTREAM CG31886 DOWNSTREAM CG9525 INTRON CG31886	TF binding site BDTNP1_TFBS_z
3R	3220649	3R_3220649_SNP [dm3] 3R_7394927_SNP [dm6]	A	G	7.730e^-4	0.956	INTERGENIC
3R	25288976	3R_25288976_SNP [dm3] 3R_29463254_SNP [dm6]	A	G	7.745e^-4	0.956	INTRON Ptp99A
2L	6533550	2L_6533550_SNP [dm3] 2L_6533550_SNP [dm6]	G	A	7.757e^-4	0.956	INTRON eya
X	11112498	X_11112498_SNP [dm3] X_11218465_SNP [dm6]	A	G	7.758e^-4	0.956	DOWNSTREAM CG44422 INTERGENIC
3R	19416720	3R_19416720_SNP [dm3] 3R_23590998_SNP [dm6]	G	A	7.764e^-4	0.956	SYNONYMOUS_CODING CG33337
3R	14616564	3R_14616564_SNP [dm3] 3R_18790842_SNP [dm6]	T	C	7.767e^-4	0.956	INTRON CG7720
2L	9552242	2L_9552242_SNP [dm3] 2L_9552242_SNP [dm6]	A	G	7.772e^-4	0.956	SYNONYMOUS_CODING jp	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2723052	3L_2723052_SNP [dm3] 3L_2723052_SNP [dm6]	G	T	7.772e^-4	0.956	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12020205	2R_12020205_SNP [dm3] 2R_16132700_SNP [dm6]	G	A	7.783e^-4	0.956	INTRON spin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12778555	3L_12778555_SNP [dm3] 3L_12785455_SNP [dm6]	A	T	7.788e^-4	0.956	INTRON Atg1	TF binding site mE1_TFBS_cad
2R	9748551	2R_9748551_SNP [dm3] 2R_13861046_SNP [dm6]	T	G	7.790e^-4	0.956	SYNONYMOUS_CODING CG16935 UPSTREAM CG13344 DOWNSTREAM Uba3	TF binding site mE1_TFBS_cad
3R	18395120	3R_18395120_SNP [dm3] 3R_22569398_SNP [dm6]	G	A	7.805e^-4	0.956	UPSTREAM CG33110 INTERGENIC
2L	10477268	2L_10477268_SNP [dm3] 2L_10477268_SNP [dm6]	G	T	7.809e^-4	0.956	UTR_5_PRIME RluA-2 INTRON RluA-2	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	13187628	3L_13187628_SNP [dm3] 3L_13194528_SNP [dm6]	C	G	7.809e^-4	0.956	INTERGENIC
3L	11511142	3L_11511142_SNP [dm3] 3L_11518042_SNP [dm6]	A	T	7.828e^-4	0.956	SYNONYMOUS_CODING CG7512 DOWNSTREAM Fuca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	24604660	3R_24604660_SNP [dm3] 3R_28778938_SNP [dm6]	T	G	7.843e^-4	0.956	INTERGENIC
3R	14259040	3R_14259040_SNP [dm3] 3R_18433318_SNP [dm6]	C	G	7.857e^-4	0.956	INTRON fru
3L	8628082	3L_8628082_SNP [dm3] 3L_8634982_SNP [dm6]	C	T	7.864e^-4	0.956	UPSTREAM Cdc6 INTRON Zasp66
3L	6641760	3L_6641760_SNP [dm3] 3L_6648660_SNP [dm6]	G	A	7.877e^-4	0.956	INTERGENIC
3R	24856559	3R_24856559_SNP [dm3] 3R_29030837_SNP [dm6]	C	G	7.899e^-4	0.956	UTR_3_PRIME CG1951 UPSTREAM CR45044 DOWNSTREAM Ssl2
3L	6644400	3L_6644400_INS [dm3] 3L_6651300_INS [dm6]	G	GG	7.920e^-4	0.956	INTERGENIC
2R	11215286	2R_11215286_SNP [dm3] 2R_15327781_SNP [dm6]	C	T	7.943e^-4	0.956	NON_SYNONYMOUS_CODING CG8160
3R	16718978	3R_16718978_SNP [dm3] 3R_20893256_SNP [dm6]	A	G	7.966e^-4	0.956	EXON CR44947
3L	2292874	3L_2292874_SNP [dm3] 3L_2292874_SNP [dm6]	A	G	7.973e^-4	0.956	INTRON MsR2
3L	12873279	3L_12873279_DEL [dm3] 3L_12880179_DEL [dm6]	GG	G	7.978e^-4	0.956	INTERGENIC
3L	5520209	3L_5520209_DEL [dm3] 3L_5527109_DEL [dm6]	TGTAT	T	7.985e^-4	0.956	INTRON Lkr
3R	21637565	3R_21637565_SNP [dm3] 3R_25811843_SNP [dm6]	T	C	7.994e^-4	0.956	UPSTREAM CG17770 & 1 other DOWNSTREAM CG5024 INTERGENIC
2R	10723667	2R_10723667_SNP [dm3] 2R_14836162_SNP [dm6]	G	A	7.997e^-4	0.956	INTERGENIC
3R	9801236	3R_9801236_SNP [dm3] 3R_13975514_SNP [dm6]	T	C	8.001e^-4	0.956	DOWNSTREAM CR43460 INTRON rdx	TF binding site BDTNP1_TFBS_dl
X	20943374	X_20943374_SNP [dm3] X_21072347_SNP [dm6]	A	T	8.048e^-4	0.956	INTRON bves	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	9478212	2R_9478212_SNP [dm3] 2R_13590707_SNP [dm6]	A	G	8.070e^-4	0.956	SYNONYMOUS_CODING CG6191 UTR_3_PRIME CG45088	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16361326	3L_16361326_SNP [dm3] 3L_16368226_SNP [dm6]	A	G	8.070e^-4	0.956	UPSTREAM Cpr72Ec & 1 other INTERGENIC
3R	3004574	3R_3004574_SNP [dm3] 3R_7178852_SNP [dm6]	G	C	8.074e^-4	0.956	SYNONYMOUS_CODING sas	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8514899	2R_8514899_SNP [dm3] 2R_12627394_SNP [dm6]	G	A	8.074e^-4	0.956	SPLICE_SITE_REGION CG17760 INTRON CG17760
3R	23195311	3R_23195311_SNP [dm3] 3R_27369589_SNP [dm6]	T	C	8.075e^-4	0.956	SYNONYMOUS_CODING CG42534 EXON CR43476
X	5882554	X_5882554_SNP [dm3] X_5988521_SNP [dm6]	T	A	8.094e^-4	0.956	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_Trl
X	5882601	X_5882601_SNP [dm3] X_5988568_SNP [dm6]	C	A	8.094e^-4	0.956	UPSTREAM CG5966 INTERGENIC	TF binding site mE1_TFBS_Trl
3L	896366	3L_896366_SNP [dm3] 3L_896366_SNP [dm6]	A	G	8.107e^-4	0.956	SYNONYMOUS_CODING CG34056
3R	572335	3R_572335_SNP [dm3] 3R_4746613_SNP [dm6]	T	A	8.124e^-4	0.956	UPSTREAM tacc INTRON tacc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	21628765	3R_21628765_SNP [dm3] 3R_25803043_SNP [dm6]	A	G	8.125e^-4	0.956	INTERGENIC
3R	21628779	3R_21628779_DEL [dm3] 3R_25803057_DEL [dm6]	TGGTACTGTTT...	T	8.125e^-4	0.956	INTERGENIC
3R	21628808	3R_21628808_SNP [dm3] 3R_25803086_SNP [dm6]	C	T	8.125e^-4	0.956	INTERGENIC
3R	21628811	3R_21628811_SNP [dm3] 3R_25803089_SNP [dm6]	T	C	8.125e^-4	0.956	INTERGENIC
3R	21628818	3R_21628818_SNP [dm3] 3R_25803096_SNP [dm6]	A	T	8.125e^-4	0.956	INTERGENIC
3R	21628823	3R_21628823_SNP [dm3] 3R_25803101_SNP [dm6]	A	T	8.125e^-4	0.956	INTERGENIC
3R	21628886	3R_21628886_DEL [dm3] 3R_25803164_DEL [dm6]	GA	G	8.125e^-4	0.956	INTERGENIC
3R	21628892	3R_21628892_SNP [dm3] 3R_25803170_SNP [dm6]	G	C	8.125e^-4	0.956	INTERGENIC
3R	21628899	3R_21628899_SNP [dm3] 3R_25803177_SNP [dm6]	T	G	8.125e^-4	0.956	INTERGENIC
3R	18205960	3R_18205960_SNP [dm3] 3R_22380238_SNP [dm6]	C	A	8.133e^-4	0.956	DOWNSTREAM CG18596 INTRON CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	15401618	3R_15401618_SNP [dm3] 3R_19575896_SNP [dm6]	G	T	8.138e^-4	0.956	INTRON Dys
2R	18491000	2R_18491000_SNP [dm3] 2R_22603495_SNP [dm6]	T	A	8.142e^-4	0.956	NON_SYNONYMOUS_CODING CG4294	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11375365	2L_11375365_SNP [dm3] 2L_11375365_SNP [dm6]	C	T	8.147e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs
3R	15403350	3R_15403350_SNP [dm3] 3R_19577628_SNP [dm6]	T	C	8.150e^-4	0.956	INTRON Dys
2L	1977730	2L_1977730_SNP [dm3] 2L_1977730_SNP [dm6]	T	C	8.151e^-4	0.956	SYNONYMOUS_CODING CG15356	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6811115	2L_6811115_SNP [dm3] 2L_6811115_SNP [dm6]	G	A	8.165e^-4	0.956	INTERGENIC
X	5094515	X_5094515_SNP [dm3] X_5200482_SNP [dm6]	C	A	8.173e^-4	0.956	INTRON rg & 1 other
3L	16480972	3L_16480972_SNP [dm3] 3L_16487872_SNP [dm6]	A	T	8.178e^-4	0.956	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
2L	5515322	2L_5515322_SNP [dm3] 2L_5515322_SNP [dm6]	A	T	8.185e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5347348	3L_5347348_SNP [dm3] 3L_5354248_SNP [dm6]	C	T	8.218e^-4	0.956	INTRON lama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3R	19728602	3R_19728602_SNP [dm3] 3R_23902880_SNP [dm6]	G	T	8.221e^-4	0.956	INTRON sba	TF binding site BDTNP1_TFBS_twi
3R	27391499	3R_27391499_SNP [dm3] 3R_31565777_SNP [dm6]	G	T	8.223e^-4	0.956	UTR_3_PRIME nyo	TF binding site BDTNP1_TFBS_twi
3L	13357146	3L_13357146_SNP [dm3] 3L_13364046_SNP [dm6]	A	G	8.234e^-4	0.956	INTERGENIC
2R	8979707	2R_8979707_SNP [dm3] 2R_13092202_SNP [dm6]	C	G	8.250e^-4	0.956	INTERGENIC
3L	11023036	3L_11023036_SNP [dm3] 3L_11029936_SNP [dm6]	T	C	8.254e^-4	0.956	DOWNSTREAM CG32081 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	22575581	3L_22575581_SNP [dm3] 3L_22582481_SNP [dm6]	G	C	8.256e^-4	0.956	UTR_3_PRIME CG14459
2R	19099916	2R_19099916_SNP [dm3] 2R_23212393_SNP [dm6]	A	G	8.256e^-4	0.956	UPSTREAM LS2 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	16480966	3L_16480966_SNP [dm3] 3L_16487866_SNP [dm6]	T	C	8.259e^-4	0.956	INTRON CG33158	TF binding site BDTNP1_TFBS_dl
3L	12824092	3L_12824092_SNP [dm3] 3L_12830992_SNP [dm6]	G	T	8.279e^-4	0.956	INTRON CG10960	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14866064	2L_14866064_SNP [dm3] 2L_14866064_SNP [dm6]	C	G	8.280e^-4	0.956	INTERGENIC
3L	8039184	3L_8039184_SNP [dm3] 3L_8046084_SNP [dm6]	T	A	8.285e^-4	0.956	INTRON nmo
3L	10928340	3L_10928340_SNP [dm3] 3L_10935240_SNP [dm6]	G	A	8.296e^-4	0.956	INTERGENIC
3R	20978494	3R_20978494_SNP [dm3] 3R_25152772_SNP [dm6]	G	T	8.305e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_cad
3L	9741704	3L_9741704_SNP [dm3] 3L_9748604_SNP [dm6]	T	G	8.306e^-4	0.956	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13646051	3R_13646051_SNP [dm3] 3R_17820329_SNP [dm6]	G	A	8.306e^-4	0.956	INTRON tinc
3L	2436432	3L_2436432_SNP [dm3] 3L_2436432_SNP [dm6]	T	A	8.307e^-4	0.956	INTRON CG45186	TF binding site mE1_TFBS_cad
3L	2376769	3L_2376769_SNP [dm3] 3L_2376769_SNP [dm6]	G	C	8.317e^-4	0.956	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004
3L	18547069	3L_18547069_SNP [dm3] 3L_18553969_SNP [dm6]	G	A	8.321e^-4	0.956	INTERGENIC
3L	18547071	3L_18547071_SNP [dm3] 3L_18553971_SNP [dm6]	A	G	8.321e^-4	0.956	INTERGENIC
3L	18547073	3L_18547073_SNP [dm3] 3L_18553973_SNP [dm6]	G	T	8.321e^-4	0.956	INTERGENIC
3L	18547085	3L_18547085_SNP [dm3] 3L_18553985_SNP [dm6]	G	A	8.321e^-4	0.956	INTERGENIC
2L	8714960	2L_8714960_SNP [dm3] 2L_8714960_SNP [dm6]	A	T	8.324e^-4	0.956	UPSTREAM raw INTRON raw
2L	8714965	2L_8714965_INS [dm3] 2L_8714965_INS [dm6]	T	TTT	8.324e^-4	0.956	UPSTREAM raw INTRON raw
2L	8714967	2L_8714967_MNP [dm3] 2L_8714967_MNP [dm6]	GGC	AAA	8.324e^-4	0.956	UPSTREAM raw INTRON raw
3R	25089895	3R_25089895_SNP [dm3] 3R_29264173_SNP [dm6]	A	C	8.329e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25089904	3R_25089904_SNP [dm3] 3R_29264182_SNP [dm6]	A	T	8.329e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25089905	3R_25089905_SNP [dm3] 3R_29264183_SNP [dm6]	G	A	8.329e^-4	0.956	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9604392	3R_9604392_SNP [dm3] 3R_13778670_SNP [dm6]	A	C	8.344e^-4	0.956	UTR_3_PRIME CG9297 UPSTREAM CG9288 & 1 other	TF binding site mE1_TFBS_Trl
2L	3624897	2L_3624897_SNP [dm3] 2L_3624897_SNP [dm6]	T	C	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3624977	2L_3624977_SNP [dm3] 2L_3624977_SNP [dm6]	A	T	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3624984	2L_3624984_SNP [dm3] 2L_3624984_SNP [dm6]	A	T	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3624989	2L_3624989_SNP [dm3] 2L_3624989_SNP [dm6]	A	T	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625010	2L_3625010_DEL [dm3] 2L_3625010_DEL [dm6]	TC	T	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625016	2L_3625016_SNP [dm3] 2L_3625016_SNP [dm6]	C	A	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625019	2L_3625019_SNP [dm3] 2L_3625019_SNP [dm6]	T	C	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625020	2L_3625020_SNP [dm3] 2L_3625020_SNP [dm6]	A	C	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625023	2L_3625023_SNP [dm3] 2L_3625023_SNP [dm6]	T	G	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	3625034	2L_3625034_SNP [dm3] 2L_3625034_SNP [dm6]	T	C	8.367e^-4	0.956	INTRON for	TF binding site BDTNP1_TFBS_da mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7110423	2L_7110423_SNP [dm3] 2L_7110423_SNP [dm6]	A	T	8.389e^-4	0.956	INTRON Pvf3
3R	21628904	3R_21628904_SNP [dm3] 3R_25803182_SNP [dm6]	G	T	8.402e^-4	0.956	INTERGENIC
X	12032766	X_12032766_SNP [dm3] X_12138733_SNP [dm6]	G	C	8.402e^-4	0.956	INTRON Ten-a
3R	17326060	3R_17326060_SNP [dm3] 3R_21500338_SNP [dm6]	T	C	8.405e^-4	0.956	SYNONYMOUS_CODING C15 UPSTREAM CR44032	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13934700	3L_13934700_SNP [dm3] 3L_13941600_SNP [dm6]	G	A	8.411e^-4	0.956	INTRON CG32137	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3L	13934701	3L_13934701_SNP [dm3] 3L_13941601_SNP [dm6]	A	T	8.411e^-4	0.956	INTRON CG32137	TF binding site mE1_TFBS_inv
3L	16539279	3L_16539279_SNP [dm3] 3L_16546179_SNP [dm6]	T	C	8.419e^-4	0.956	UPSTREAM CG13033 INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	736133	3L_736133_SNP [dm3] 3L_736133_SNP [dm6]	G	A	8.428e^-4	0.956	DOWNSTREAM CR43785 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	13556249	3R_13556249_SNP [dm3] 3R_17730527_SNP [dm6]	A	T	8.446e^-4	0.956	INTRON Lgr1
X	5237821	X_5237821_SNP [dm3] X_5343788_SNP [dm6]	T	A	8.452e^-4	0.956	INTRON SK
X	11217121	X_11217121_SNP [dm3] X_11323088_SNP [dm6]	T	C	8.456e^-4	0.956	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	1194348	X_1194348_SNP [dm3] X_1300315_SNP [dm6]	A	T	8.464e^-4	0.956	INTRON DAAM
2L	4650068	2L_4650068_SNP [dm3] 2L_4650068_SNP [dm6]	A	T	8.540e^-4	0.956	INTERGENIC
X	14470875	X_14470875_INS [dm3] X_14576842_INS [dm6]	A	ATAAGATGTATT...	8.541e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14470879	X_14470879_SNP [dm3] X_14576846_SNP [dm6]	T	A	8.541e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20943024	X_20943024_SNP [dm3] X_21071997_SNP [dm6]	C	T	8.550e^-4	0.956	INTRON bves	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	980499	3L_980499_SNP [dm3] 3L_980499_SNP [dm6]	G	T	8.579e^-4	0.956	UTR_3_PRIME Glut1 INTRON Glut1
2R	12373282	2R_12373282_SNP [dm3] 2R_16485777_SNP [dm6]	A	C	8.582e^-4	0.956	UPSTREAM CG15712 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	14470872	X_14470872_SNP [dm3] X_14576839_SNP [dm6]	T	A	8.583e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11290244	2R_11290244_SNP [dm3] 2R_15402739_SNP [dm6]	C	T	8.597e^-4	0.956	INTRON CG43729
2L	21917588	2L_21917588_SNP [dm3] 2L_21917588_SNP [dm6]	C	A	8.599e^-4	0.956	DOWNSTREAM CG11634 INTRON CG11634
3R	25808861	3R_25808861_SNP [dm3] 3R_29983139_SNP [dm6]	A	C	8.599e^-4	0.956	UPSTREAM CG7896 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	2461148	3R_2461148_DEL [dm3] 3R_6635426_DEL [dm6]	ATTCCTA	A	8.603e^-4	0.956	INTERGENIC
2R	13905822	2R_13905822_SNP [dm3] 2R_18018317_SNP [dm6]	G	T	8.614e^-4	0.956	UPSTREAM CG5084 INTERGENIC
2R	18024616	2R_18024616_SNP [dm3] 2R_22137111_SNP [dm6]	G	A	8.615e^-4	0.956	UTR_5_PRIME a UPSTREAM a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
3R	13645308	3R_13645308_SNP [dm3] 3R_17819586_SNP [dm6]	C	A	8.649e^-4	0.956	INTRON tinc
3R	21593465	3R_21593465_SNP [dm3] 3R_25767743_SNP [dm6]	A	T	8.660e^-4	0.956	INTERGENIC
3R	21593466	3R_21593466_SNP [dm3] 3R_25767744_SNP [dm6]	T	A	8.660e^-4	0.956	INTERGENIC
3L	9404780	3L_9404780_SNP [dm3] 3L_9411680_SNP [dm6]	G	A	8.666e^-4	0.956	SYNONYMOUS_CODING CG3689 UPSTREAM CG4022	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	7205266	3L_7205266_SNP [dm3] 3L_7212166_SNP [dm6]	A	C	8.675e^-4	0.956	INTERGENIC
3L	18219879	3L_18219879_SNP [dm3] 3L_18226779_SNP [dm6]	T	A	8.684e^-4	0.956	INTERGENIC
3R	11584157	3R_11584157_SNP [dm3] 3R_15758435_SNP [dm6]	G	A	8.688e^-4	0.956	INTERGENIC
3R	11584168	3R_11584168_SNP [dm3] 3R_15758446_SNP [dm6]	C	T	8.688e^-4	0.956	INTERGENIC
X	21896456	X_21896456_SNP [dm3] X_22494620_SNP [dm6]	T	G	8.692e^-4	0.956	INTRON l_1_G0196	transposable element FlyBase
3L	18219893	3L_18219893_SNP [dm3] 3L_18226793_SNP [dm6]	C	G	8.701e^-4	0.956	INTERGENIC
3L	3574101	3L_3574101_SNP [dm3] 3L_3574101_SNP [dm6]	C	T	8.706e^-4	0.956	INTRON Eip63E
2R	12593656	2R_12593656_SNP [dm3] 2R_16706151_SNP [dm6]	C	T	8.713e^-4	0.956	UTR_5_PRIME CG30463	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	21082745	2L_21082745_SNP [dm3] 2L_21082745_SNP [dm6]	A	G	8.732e^-4	0.956	UTR_3_PRIME CG33510 UPSTREAM CG33511
3R	15160957	3R_15160957_SNP [dm3] 3R_19335235_SNP [dm6]	T	G	8.735e^-4	0.956	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18248160	3L_18248160_SNP [dm3] 3L_18255060_SNP [dm6]	C	G	8.763e^-4	0.956	INTERGENIC
2L	1010518	2L_1010518_SNP [dm3] 2L_1010518_SNP [dm6]	A	T	8.787e^-4	0.956	UTR_3_PRIME IA-2 DOWNSTREAM IA-2
2L	11776424	2L_11776424_SNP [dm3] 2L_11776424_SNP [dm6]	A	G	8.792e^-4	0.956	INTERGENIC
2L	11776432	2L_11776432_SNP [dm3] 2L_11776432_SNP [dm6]	G	T	8.792e^-4	0.956	INTERGENIC
2L	11776435	2L_11776435_SNP [dm3] 2L_11776435_SNP [dm6]	C	G	8.792e^-4	0.956	INTERGENIC
2L	11776445	2L_11776445_SNP [dm3] 2L_11776445_SNP [dm6]	A	T	8.792e^-4	0.956	INTERGENIC
2L	11776448	2L_11776448_INS [dm3] 2L_11776448_INS [dm6]	C	AT	8.792e^-4	0.956	INTERGENIC
3R	5048712	3R_5048712_SNP [dm3] 3R_9222990_SNP [dm6]	C	T	8.797e^-4	0.956	INTRON pum
3L	10257015	3L_10257015_SNP [dm3] 3L_10263915_SNP [dm6]	G	A	8.806e^-4	0.956	UTR_3_PRIME can
3L	9593518	3L_9593518_SNP [dm3] 3L_9600418_SNP [dm6]	C	A	8.812e^-4	0.956	DOWNSTREAM CG3088 & 1 other INTERGENIC
3L	9593523	3L_9593523_SNP [dm3] 3L_9600423_SNP [dm6]	C	T	8.812e^-4	0.956	DOWNSTREAM CG3088 & 1 other INTERGENIC
2R	19679498	2R_19679498_SNP [dm3] 2R_23791975_SNP [dm6]	A	G	8.824e^-4	0.956	UPSTREAM CG15800 INTRON CG9850
3R	26653896	3R_26653896_SNP [dm3] 3R_30828174_SNP [dm6]	T	A	8.829e^-4	0.956	UTR_5_PRIME CG15544
3R	26653910	3R_26653910_SNP [dm3] 3R_30828188_SNP [dm6]	A	G	8.829e^-4	0.956	UTR_5_PRIME CG15544
2L	6425705	2L_6425705_SNP [dm3] 2L_6425705_SNP [dm6]	C	T	8.835e^-4	0.956	INTRON Fic	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13665322	2L_13665322_SNP [dm3] 2L_13665322_SNP [dm6]	C	T	8.843e^-4	0.956	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13665346	2L_13665346_SNP [dm3] 2L_13665346_SNP [dm6]	C	A	8.843e^-4	0.956	UPSTREAM CG18507 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	2128102	X_2128102_SNP [dm3] X_2234069_SNP [dm6]	A	C	8.845e^-4	0.956	SYNONYMOUS_CODING pcx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13003652	3R_13003652_SNP [dm3] 3R_17177930_SNP [dm6]	G	C	8.863e^-4	0.956	INTRON Mur89F
3R	16704202	3R_16704202_SNP [dm3] 3R_20878480_SNP [dm6]	A	C	8.865e^-4	0.956	DOWNSTREAM TotZ EXON CR44048
3R	10604996	3R_10604996_SNP [dm3] 3R_14779274_SNP [dm6]	G	C	8.872e^-4	0.956	INTRON jvl
2R	6483144	2R_6483144_SNP [dm3] 2R_10595639_SNP [dm6]	C	A	8.878e^-4	0.956	INTRON psq	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad
3R	15888947	3R_15888947_SNP [dm3] 3R_20063225_SNP [dm6]	C	T	8.896e^-4	0.956	INTERGENIC
3L	11912013	3L_11912013_DEL [dm3] 3L_11918913_DEL [dm6]	TT	T	8.902e^-4	0.956	INTRON CG44837	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	15458906	3R_15458906_SNP [dm3] 3R_19633184_SNP [dm6]	C	T	8.903e^-4	0.956	UPSTREAM CG6231 DOWNSTREAM subdued INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	15566336	3R_15566336_SNP [dm3] 3R_19740614_SNP [dm6]	G	A	8.905e^-4	0.956	INTRON GluClalpha	TF binding site mE1_TFBS_Trl
2L	9436691	2L_9436691_SNP [dm3] 2L_9436691_SNP [dm6]	C	G	8.911e^-4	0.956	SYNONYMOUS_CODING CG3769 UPSTREAM RpS28-like & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16993824	3R_16993824_SNP [dm3] 3R_21168102_SNP [dm6]	G	T	8.917e^-4	0.956	SYNONYMOUS_CODING Snmp1 INTRON SNF4Agamma
3R	17476110	3R_17476110_SNP [dm3] 3R_21650388_SNP [dm6]	C	G	8.922e^-4	0.956	INTRON E2f
3R	25285488	3R_25285488_SNP [dm3] 3R_29459766_SNP [dm6]	A	T	8.923e^-4	0.956	UPSTREAM CR44022 INTRON Ptp99A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11104804	3L_11104804_SNP [dm3] 3L_11111704_SNP [dm6]	G	C	8.939e^-4	0.956	DOWNSTREAM Sod INTRON CG7638
X	19360274	X_19360274_SNP [dm3] X_19466241_SNP [dm6]	C	A	8.972e^-4	0.956	INTRON kek5	TF binding site mE1_TFBS_cad
2L	17794007	2L_17794007_SNP [dm3] 2L_17794007_SNP [dm6]	C	T	9.000e^-4	0.956	DOWNSTREAM CR43419 INTRON CadN2
3R	14066411	3R_14066411_SNP [dm3] 3R_18240689_SNP [dm6]	A	G	9.003e^-4	0.956	SYNONYMOUS_CODING CG7156 UTR_3_PRIME CG7156	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6622602	3L_6622602_SNP [dm3] 3L_6629502_SNP [dm6]	C	T	9.005e^-4	0.956	INTRON GluRIA
3L	10579537	3L_10579537_SNP [dm3] 3L_10586437_SNP [dm6]	C	T	9.014e^-4	0.956	INTRON A2bp1
2L	14530720	2L_14530720_DEL [dm3] 2L_14530720_DEL [dm6]	TT	T	9.054e^-4	0.956	UPSTREAM tRNA:G3:35Bd DOWNSTREAM tRNA:G3:35Be INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	5234139	3L_5234139_INS [dm3] 3L_5241039_INS [dm6]	C	CC	9.058e^-4	0.956	INTRON shep
X	2690685	X_2690685_SNP [dm3] X_2796652_SNP [dm6]	A	T	9.061e^-4	0.956	UPSTREAM w INTRON kirre	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
X	22191483	X_22191483_SNP [dm3] X_22789647_SNP [dm6]	G	A	9.069e^-4	0.956	INTRON CR44997
3R	19026496	3R_19026496_SNP [dm3] 3R_23200774_SNP [dm6]	A	G	9.100e^-4	0.956	UPSTREAM cnc DOWNSTREAM fzo INTRON cnc	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2R	17292500	2R_17292500_DEL [dm3] 2R_21404995_DEL [dm6]	GCCACCAAGACGCCGGG...	G	9.107e^-4	0.956	INTRON Sdc
X	15564072	X_15564072_SNP [dm3] X_15670039_SNP [dm6]	C	T	9.121e^-4	0.956	UPSTREAM CG15646 INTRON CG15646	TF binding site BDTNP1_TFBS_dl
3R	25807335	3R_25807335_SNP [dm3] 3R_29981613_SNP [dm6]	A	G	9.134e^-4	0.956	INTERGENIC
3L	5764065	3L_5764065_SNP [dm3] 3L_5770965_SNP [dm6]	C	G	9.142e^-4	0.956	UPSTREAM scny INTRON scny	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	17314122	3R_17314122_SNP [dm3] 3R_21488400_SNP [dm6]	T	G	9.143e^-4	0.956	DOWNSTREAM CG7922 INTERGENIC	TF binding site mE1_TFBS_bab1
3R	17314262	3R_17314262_SNP [dm3] 3R_21488540_SNP [dm6]	A	G	9.143e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_bab1
X	20229564	X_20229564_SNP [dm3] X_20358537_SNP [dm6]	T	C	9.150e^-4	0.956	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

se_PhototaxLight_wk1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results