DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=6.184e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.3755	0.0662

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1660 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	19799196	2L_19799196_SNP [dm3] 2L_19799196_SNP [dm6]	G	A	6.323e^-7	0.796	INTRON sick
3L	2682633	3L_2682633_SNP [dm3] 3L_2682633_SNP [dm6]	C	T	8.845e^-7	0.796	INTRON Fife
3L	2653035	3L_2653035_SNP [dm3] 3L_2653035_SNP [dm6]	A	C	1.997e^-6	0.796	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
2R	1783485	2R_1783485_SNP [dm3] 2R_5895980_SNP [dm6]	A	G	2.176e^-6	0.796	INTRON CG43366	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10935679	3L_10935679_SNP [dm3] 3L_10942579_SNP [dm6]	G	C	2.926e^-6	0.796	INTERGENIC
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	3.053e^-6	0.796	INTRON sick
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	3.053e^-6	0.796	INTRON sick
3L	2682181	3L_2682181_SNP [dm3] 3L_2682181_SNP [dm6]	C	T	4.365e^-6	0.894	INTRON Fife
3L	2682188	3L_2682188_SNP [dm3] 3L_2682188_SNP [dm6]	C	G	4.411e^-6	0.894	INTRON Fife
2R	19647456	2R_19647456_SNP [dm3] 2R_23759933_SNP [dm6]	G	T	4.984e^-6	0.902	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	19045379	3L_19045379_SNP [dm3] 3L_19052279_SNP [dm6]	A	G	6.099e^-6	0.902	UPSTREAM CR44675 & 1 other DOWNSTREAM CG43407 INTERGENIC
2L	19803221	2L_19803221_SNP [dm3] 2L_19803221_SNP [dm6]	G	A	6.768e^-6	0.902	INTRON sick
2R	3080310	2R_3080310_SNP [dm3] 2R_7192805_SNP [dm6]	A	G	9.268e^-6	0.902	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
2L	3231514	2L_3231514_SNP [dm3] 2L_3231514_SNP [dm6]	G	A	1.503e^-5	0.902	INTERGENIC
2R	6353921	2R_6353921_SNP [dm3] 2R_10466416_SNP [dm6]	G	C	1.526e^-5	0.902	NON_SYNONYMOUS_CODING Caf1-105 DOWNSTREAM Galphao	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	12476875	2R_12476875_SNP [dm3] 2R_16589370_SNP [dm6]	C	T	1.546e^-5	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12476878	2R_12476878_SNP [dm3] 2R_16589373_SNP [dm6]	A	G	1.546e^-5	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13676838	2L_13676838_SNP [dm3] 2L_13676838_SNP [dm6]	A	G	1.573e^-5	0.902	DOWNSTREAM CG31814 INTERGENIC
2R	16969175	2R_16969175_SNP [dm3] 2R_21081670_SNP [dm6]	T	C	1.633e^-5	0.902	INTRON Treh
2R	12166552	2R_12166552_SNP [dm3] 2R_16279047_SNP [dm6]	G	T	1.641e^-5	0.902	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17244058	3L_17244058_SNP [dm3] 3L_17250958_SNP [dm6]	C	A	1.707e^-5	0.902	INTRON CR43870
3L	1068641	3L_1068641_SNP [dm3] 3L_1068641_SNP [dm6]	T	A	1.717e^-5	0.902	INTRON bab1
2R	1810666	2R_1810666_SNP [dm3] 2R_5923161_SNP [dm6]	T	C	1.761e^-5	0.902	INTRON CG43366
2R	1810735	2R_1810735_SNP [dm3] 2R_5923230_SNP [dm6]	G	A	1.761e^-5	0.902	INTRON CG43366	transposable element FlyBase
3L	2653159	3L_2653159_SNP [dm3] 3L_2653159_SNP [dm6]	T	C	1.820e^-5	0.902	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304
3L	16818414	3L_16818414_SNP [dm3] 3L_16825314_SNP [dm6]	A	G	1.859e^-5	0.902	INTRON CG13024
3L	2673135	3L_2673135_SNP [dm3] 3L_2673135_SNP [dm6]	G	C	1.941e^-5	0.902	SYNONYMOUS_CODING Fife
2R	10970102	2R_10970102_SNP [dm3] 2R_15082597_SNP [dm6]	T	A	1.987e^-5	0.902	INTERGENIC
2R	15291764	2R_15291764_SNP [dm3] 2R_19404259_SNP [dm6]	A	G	2.011e^-5	0.902	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8528004	2R_8528004_SNP [dm3] 2R_12640499_SNP [dm6]	A	T	2.021e^-5	0.902	UTR_3_PRIME Iswi DOWNSTREAM CG8785
X	9973343	X_9973343_SNP [dm3] X_10079310_SNP [dm6]	A	G	2.197e^-5	0.902	SYNONYMOUS_CODING ZAP3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17304836	3L_17304836_SNP [dm3] 3L_17311736_SNP [dm6]	C	G	2.215e^-5	0.902	INTERGENIC
2R	18138943	2R_18138943_SNP [dm3] 2R_22251438_SNP [dm6]	T	A	2.484e^-5	0.902	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6743707	3L_6743707_SNP [dm3] 3L_6750607_SNP [dm6]	C	T	2.587e^-5	0.902	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	13253781	2L_13253781_SNP [dm3] 2L_13253781_SNP [dm6]	T	A	2.632e^-5	0.902	INTRON CG31728
3L	14086618	3L_14086618_SNP [dm3] 3L_14093518_SNP [dm6]	T	C	2.901e^-5	0.902	INTERGENIC
2L	19799168	2L_19799168_SNP [dm3] 2L_19799168_SNP [dm6]	T	G	2.907e^-5	0.902	INTRON sick
2R	14968671	2R_14968671_SNP [dm3] 2R_19081166_SNP [dm6]	T	C	2.957e^-5	0.902	INTRON 5-HT1A
2L	3071323	2L_3071323_SNP [dm3] 2L_3071323_SNP [dm6]	T	C	2.994e^-5	0.902	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11575837	2L_11575837_SNP [dm3] 2L_11575837_SNP [dm6]	A	G	3.001e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4638401	3L_4638401_SNP [dm3] 3L_4638401_SNP [dm6]	T	A	3.025e^-5	0.902	INTRON axo
2L	9850452	2L_9850452_DEL [dm3] 2L_9850452_DEL [dm6]	ACCA	TGG	3.141e^-5	0.902	INTRON nAChRalpha6
2L	11577119	2L_11577119_SNP [dm3] 2L_11577119_SNP [dm6]	C	T	3.310e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	18953730	3R_18953730_SNP [dm3] 3R_23128008_SNP [dm6]	G	A	3.482e^-5	0.902	UPSTREAM CG31457 DOWNSTREAM hh INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	19449323	X_19449323_SNP [dm3] X_19555290_SNP [dm6]	T	C	3.539e^-5	0.902	INTERGENIC
3L	8205502	3L_8205502_SNP [dm3] 3L_8212402_SNP [dm6]	A	G	3.585e^-5	0.902	SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
2L	15187088	2L_15187088_SNP [dm3] 2L_15187088_SNP [dm6]	C	T	3.743e^-5	0.902	INTRON CG4168
3L	6293672	3L_6293672_SNP [dm3] 3L_6300572_SNP [dm6]	C	A	3.762e^-5	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12476872	2R_12476872_SNP [dm3] 2R_16589367_SNP [dm6]	G	T	3.796e^-5	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	3.817e^-5	0.902	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	10169910	3R_10169910_SNP [dm3] 3R_14344188_SNP [dm6]	T	A	3.855e^-5	0.902	INTRON NK7.1	TF binding site mE1_TFBS_cad
2L	19699560	2L_19699560_SNP [dm3] 2L_19699560_SNP [dm6]	A	T	3.892e^-5	0.902	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	11303319	2L_11303319_DEL [dm3] 2L_11303319_DEL [dm6]	TTT	T	3.963e^-5	0.902	INTERGENIC
X	2619909	X_2619909_SNP [dm3] X_2725876_SNP [dm6]	T	C	4.090e^-5	0.902	SYNONYMOUS_CODING fs_1_Ya UPSTREAM CG2709	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4216726	2R_4216726_SNP [dm3] 2R_8329221_SNP [dm6]	G	A	4.216e^-5	0.902	INTRON pdm3
2R	19207046	2R_19207046_SNP [dm3] 2R_23319523_SNP [dm6]	C	T	4.302e^-5	0.902	UPSTREAM CG30412 INTERGENIC
2L	2630591	2L_2630591_SNP [dm3] 2L_2630591_SNP [dm6]	T	G	4.345e^-5	0.902	INTERGENIC
2R	20214502	2R_20214502_SNP [dm3] 2R_24326979_SNP [dm6]	A	C	4.553e^-5	0.902	INTRON CR44810
2L	3692202	2L_3692202_SNP [dm3] 2L_3692202_SNP [dm6]	T	G	4.617e^-5	0.902	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	2596907	2L_2596907_SNP [dm3] 2L_2596907_SNP [dm6]	G	C	4.659e^-5	0.902	INTERGENIC
X	8835971	X_8835971_SNP [dm3] X_8941938_SNP [dm6]	C	T	4.794e^-5	0.902	INTRON rdgA
2L	12491339	2L_12491339_SNP [dm3] 2L_12491339_SNP [dm6]	C	T	4.814e^-5	0.902	INTRON bun
X	8812813	X_8812813_SNP [dm3] X_8918780_SNP [dm6]	A	G	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812820	X_8812820_DEL [dm3] X_8918787_DEL [dm6]	GCCGTGGAAA	G	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812832	X_8812832_SNP [dm3] X_8918799_SNP [dm6]	G	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812833	X_8812833_DEL [dm3] X_8918800_DEL [dm6]	CC	C	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812839	X_8812839_SNP [dm3] X_8918806_SNP [dm6]	G	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812840	X_8812840_SNP [dm3] X_8918807_SNP [dm6]	A	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812843	X_8812843_SNP [dm3] X_8918810_SNP [dm6]	G	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812844	X_8812844_SNP [dm3] X_8918811_SNP [dm6]	A	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812868	X_8812868_SNP [dm3] X_8918835_SNP [dm6]	C	T	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
X	8812881	X_8812881_INS [dm3] X_8918848_INS [dm6]	T	TGTCTTTTTCCGCTT...	4.914e^-5	0.902	DOWNSTREAM CR44111 INTRON rdgA
3L	2653039	3L_2653039_SNP [dm3] 3L_2653039_SNP [dm6]	G	A	4.933e^-5	0.902	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
3R	26642667	3R_26642667_SNP [dm3] 3R_30816945_SNP [dm6]	T	C	5.032e^-5	0.902	SYNONYMOUS_CODING cindr UTR_5_PRIME cindr UPSTREAM cindr	TF binding site mE1_TFBS_cad
3L	18030414	3L_18030414_SNP [dm3] 3L_18037314_SNP [dm6]	C	T	5.041e^-5	0.902	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	2674011	3L_2674011_SNP [dm3] 3L_2674011_SNP [dm6]	C	A	5.249e^-5	0.902	INTRON Fife
3L	4638403	3L_4638403_SNP [dm3] 3L_4638403_SNP [dm6]	C	G	5.384e^-5	0.902	INTRON axo
2R	19649886	2R_19649886_SNP [dm3] 2R_23762363_SNP [dm6]	C	T	5.507e^-5	0.902	INTRON CG9850
3L	4414846	3L_4414846_SNP [dm3] 3L_4414846_SNP [dm6]	G	C	5.514e^-5	0.902	UTR_5_PRIME DOR INTRON DOR
2L	19424533	2L_19424533_SNP [dm3] 2L_19424533_SNP [dm6]	G	A	5.562e^-5	0.902	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_Trl
3L	8996925	3L_8996925_SNP [dm3] 3L_9003825_SNP [dm6]	C	A	5.644e^-5	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
2R	19207156	2R_19207156_SNP [dm3] 2R_23319633_SNP [dm6]	G	C	5.778e^-5	0.902	UPSTREAM CG30412 INTERGENIC
2L	15027590	2L_15027590_SNP [dm3] 2L_15027590_SNP [dm6]	C	G	5.865e^-5	0.902	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
3L	2660756	3L_2660756_SNP [dm3] 3L_2660756_SNP [dm6]	T	C	5.906e^-5	0.902	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
X	18640270	X_18640270_SNP [dm3] X_18746237_SNP [dm6]	A	T	5.945e^-5	0.902	DOWNSTREAM CG12609 INTERGENIC
3R	11020570	3R_11020570_SNP [dm3] 3R_15194848_SNP [dm6]	A	G	5.977e^-5	0.902	SYNONYMOUS_CODING CG6752	TF binding site mE1_TFBS_sens
3R	13045684	3R_13045684_SNP [dm3] 3R_17219962_SNP [dm6]	G	C	6.082e^-5	0.902	UPSTREAM CG31262 INTRON CG31262
3R	13068006	3R_13068006_SNP [dm3] 3R_17242284_SNP [dm6]	C	A	6.114e^-5	0.902	INTRON beat-IIb
3L	2680702	3L_2680702_SNP [dm3] 3L_2680702_SNP [dm6]	C	T	6.119e^-5	0.902	INTRON Fife
X	15125592	X_15125592_SNP [dm3] X_15231559_SNP [dm6]	A	C	6.124e^-5	0.902	INTERGENIC
3L	2431346	3L_2431346_DEL [dm3] 3L_2431346_DEL [dm6]	TT	T	6.198e^-5	0.902	INTRON CG45186
2L	5962848	2L_5962848_INS [dm3] 2L_5962848_INS [dm6]	G	GTCT	6.405e^-5	0.902	DOWNSTREAM psd INTERGENIC
3R	22684412	3R_22684412_SNP [dm3] 3R_26858690_SNP [dm6]	A	G	6.438e^-5	0.902	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2R	15301105	2R_15301105_SNP [dm3] 2R_19413600_SNP [dm6]	G	C	6.521e^-5	0.902	UPSTREAM tRNA:S4:56D DOWNSTREAM snoRNA:hts-a INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	13064137	3R_13064137_SNP [dm3] 3R_17238415_SNP [dm6]	G	A	6.686e^-5	0.902	INTRON beat-IIb
3L	19045378	3L_19045378_SNP [dm3] 3L_19052278_SNP [dm6]	C	A	6.882e^-5	0.902	UPSTREAM CR44675 & 1 other DOWNSTREAM CG43407 INTERGENIC
3R	13064142	3R_13064142_SNP [dm3] 3R_17238420_SNP [dm6]	T	C	7.037e^-5	0.902	INTRON beat-IIb
2L	19682216	2L_19682216_SNP [dm3] 2L_19682216_SNP [dm6]	C	T	7.046e^-5	0.902	INTRON Lar
X	8661142	X_8661142_SNP [dm3] X_8767109_SNP [dm6]	A	G	7.058e^-5	0.902	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16205977	2R_16205977_SNP [dm3] 2R_20318472_SNP [dm6]	A	T	7.118e^-5	0.902	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
2L	6029491	2L_6029491_SNP [dm3] 2L_6029491_SNP [dm6]	G	A	7.134e^-5	0.902	INTRON CG9109
3L	12900542	3L_12900542_SNP [dm3] 3L_12907442_SNP [dm6]	A	G	7.157e^-5	0.902	INTERGENIC
3R	17398635	3R_17398635_SNP [dm3] 3R_21572913_SNP [dm6]	C	A	7.245e^-5	0.902	UTR_3_PRIME InR
3L	7276979	3L_7276979_SNP [dm3] 3L_7283879_SNP [dm6]	G	A	7.473e^-5	0.902	INTRON unc-13-4A
3L	2548067	3L_2548067_SNP [dm3] 3L_2548067_SNP [dm6]	G	A	7.478e^-5	0.902	INTRON Spn
3R	23135606	3R_23135606_SNP [dm3] 3R_27309884_SNP [dm6]	A	G	7.615e^-5	0.902	INTRON CG3339
3L	2313160	3L_2313160_SNP [dm3] 3L_2313160_SNP [dm6]	G	T	7.622e^-5	0.902	INTERGENIC
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	7.646e^-5	0.902	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
3R	22684513	3R_22684513_SNP [dm3] 3R_26858791_SNP [dm6]	G	A	7.724e^-5	0.902	INTRON Lerp	TF binding site mE1_TFBS_chinmo
X	19448887	X_19448887_SNP [dm3] X_19554854_SNP [dm6]	G	A	7.730e^-5	0.902	INTERGENIC
2L	18992748	2L_18992748_SNP [dm3] 2L_18992748_SNP [dm6]	G	C	7.798e^-5	0.902	DOWNSTREAM CG10650 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
3L	1605529	3L_1605529_SNP [dm3] 3L_1605529_SNP [dm6]	C	T	7.840e^-5	0.902	SPLICE_SITE_REGION CG33791 & 1 other INTRON CG33791 & 1 other
2L	7785060	2L_7785060_SNP [dm3] 2L_7785060_SNP [dm6]	T	C	7.841e^-5	0.902	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19801194	2L_19801194_SNP [dm3] 2L_19801194_SNP [dm6]	G	A	7.905e^-5	0.902	INTRON sick
2L	19801201	2L_19801201_SNP [dm3] 2L_19801201_SNP [dm6]	A	C	7.905e^-5	0.902	INTRON sick
3L	16818418	3L_16818418_SNP [dm3] 3L_16825318_SNP [dm6]	C	T	7.958e^-5	0.902	INTRON CG13024
2R	9669464	2R_9669464_SNP [dm3] 2R_13781959_SNP [dm6]	T	C	8.090e^-5	0.902	INTRON Cpr50Ca
3R	14554089	3R_14554089_SNP [dm3] 3R_18728367_SNP [dm6]	A	G	8.164e^-5	0.902	INTRON Cha & 1 other	TF binding site mE1_TFBS_chinmo
2L	19250423	2L_19250423_SNP [dm3] 2L_19250423_SNP [dm6]	G	T	8.219e^-5	0.902	INTERGENIC
3L	2660717	3L_2660717_SNP [dm3] 3L_2660717_SNP [dm6]	C	T	8.372e^-5	0.902	UTR_3_PRIME CG33233 UPSTREAM CG33234 INTRON Fife & 1 other
2L	11577388	2L_11577388_SNP [dm3] 2L_11577388_SNP [dm6]	A	G	8.380e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25289906	3R_25289906_SNP [dm3] 3R_29464184_SNP [dm6]	A	G	8.447e^-5	0.902	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	2658387	3L_2658387_SNP [dm3] 3L_2658387_SNP [dm6]	G	A	8.453e^-5	0.902	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16818503	3L_16818503_DEL [dm3] 3L_16825403_DEL [dm6]	CTAAG	A	8.473e^-5	0.902	INTRON CG13024
3L	16818508	3L_16818508_SNP [dm3] 3L_16825408_SNP [dm6]	T	C	8.473e^-5	0.902	INTRON CG13024
3L	16818513	3L_16818513_SNP [dm3] 3L_16825413_SNP [dm6]	T	A	8.473e^-5	0.902	INTRON CG13024
3L	16818525	3L_16818525_DEL [dm3] 3L_16825425_DEL [dm6]	AT	A	8.473e^-5	0.902	INTRON CG13024
3R	19540687	3R_19540687_DEL [dm3] 3R_23714965_DEL [dm6]	CTCTATCTTAAGACTTC...	C	8.513e^-5	0.902	INTRON nau
2L	19914432	2L_19914432_SNP [dm3] 2L_19914432_SNP [dm6]	A	G	8.617e^-5	0.902	UPSTREAM Victoria INTRON sick
2L	10984731	2L_10984731_SNP [dm3] 2L_10984731_SNP [dm6]	G	C	8.738e^-5	0.902	INTRON piwi	transposable element FlyBase
3L	1495982	3L_1495982_SNP [dm3] 3L_1495982_SNP [dm6]	G	T	8.739e^-5	0.902	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	2665829	3L_2665829_SNP [dm3] 3L_2665829_SNP [dm6]	T	C	8.843e^-5	0.902	INTRON Fife
2L	19802463	2L_19802463_SNP [dm3] 2L_19802463_SNP [dm6]	A	C	8.865e^-5	0.902	INTRON sick
2L	19802476	2L_19802476_SNP [dm3] 2L_19802476_SNP [dm6]	G	A	8.865e^-5	0.902	INTRON sick
X	15155376	X_15155376_SNP [dm3] X_15261343_SNP [dm6]	G	A	8.905e^-5	0.902	INTERGENIC
2L	15034911	2L_15034911_SNP [dm3] 2L_15034911_SNP [dm6]	T	A	9.000e^-5	0.902	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
2R	14573354	2R_14573354_SNP [dm3] 2R_18685849_SNP [dm6]	A	T	9.118e^-5	0.902	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo
3L	2791800	3L_2791800_SNP [dm3] 3L_2791800_SNP [dm6]	G	A	9.192e^-5	0.902	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14004490	2L_14004490_SNP [dm3] 2L_14004490_SNP [dm6]	A	T	9.216e^-5	0.902	INTERGENIC
2R	6058187	2R_6058187_SNP [dm3] 2R_10170682_SNP [dm6]	G	T	9.225e^-5	0.902	INTRON KCNQ
3L	7283169	3L_7283169_SNP [dm3] 3L_7290069_SNP [dm6]	G	T	9.422e^-5	0.902	INTRON unc-13-4A
2R	4240680	2R_4240680_SNP [dm3] 2R_8353175_SNP [dm6]	A	G	9.425e^-5	0.902	INTRON pdm3
X	4624065	X_4624065_SNP [dm3] X_4730032_SNP [dm6]	T	A	9.464e^-5	0.902	DOWNSTREAM Proc-R INTERGENIC
2R	12637279	2R_12637279_SNP [dm3] 2R_16749774_SNP [dm6]	C	T	9.516e^-5	0.902	UPSTREAM Acp53C14b DOWNSTREAM Acp53Ea INTERGENIC
3R	13068004	3R_13068004_SNP [dm3] 3R_17242282_SNP [dm6]	T	C	9.596e^-5	0.902	INTRON beat-IIb
2L	13983452	2L_13983452_SNP [dm3] 2L_13983452_SNP [dm6]	A	T	9.769e^-5	0.902	SYNONYMOUS_CODING rk DOWNSTREAM NimC2
2L	1457369	2L_1457369_SNP [dm3] 2L_1457369_SNP [dm6]	G	C	9.780e^-5	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16818441	3L_16818441_SNP [dm3] 3L_16825341_SNP [dm6]	G	A	9.847e^-5	0.902	INTRON CG13024
2R	8716986	2R_8716986_SNP [dm3] 2R_12829481_SNP [dm6]	T	C	9.980e^-5	0.902	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	14663051	2R_14663051_SNP [dm3] 2R_18775546_SNP [dm6]	T	A	1.007e^-4	0.902	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
2L	19699577	2L_19699577_SNP [dm3] 2L_19699577_SNP [dm6]	T	C	1.019e^-4	0.902	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13880694	3R_13880694_SNP [dm3] 3R_18054972_SNP [dm6]	A	G	1.035e^-4	0.902	INTERGENIC
3R	19540756	3R_19540756_SNP [dm3] 3R_23715034_SNP [dm6]	G	A	1.035e^-4	0.902	INTRON nau
3L	958423	3L_958423_SNP [dm3] 3L_958423_SNP [dm6]	T	C	1.040e^-4	0.902	INTRON Glut1
2L	13259759	2L_13259759_SNP [dm3] 2L_13259759_SNP [dm6]	A	T	1.043e^-4	0.902	UPSTREAM CG31730 INTERGENIC
2L	19225393	2L_19225393_SNP [dm3] 2L_19225393_SNP [dm6]	T	C	1.047e^-4	0.902	INTERGENIC
3R	23537421	3R_23537421_SNP [dm3] 3R_27711699_SNP [dm6]	A	G	1.062e^-4	0.902	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	5282603	2R_5282603_SNP [dm3] 2R_9395098_SNP [dm6]	C	T	1.063e^-4	0.902	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad
X	16375813	X_16375813_SNP [dm3] X_16481780_SNP [dm6]	C	A	1.075e^-4	0.902	INTRON para
2L	15034904	2L_15034904_SNP [dm3] 2L_15034904_SNP [dm6]	A	C	1.080e^-4	0.902	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
2R	8251874	2R_8251874_SNP [dm3] 2R_12364369_SNP [dm6]	T	C	1.083e^-4	0.902	SPLICE_SITE_REGION CR33013 INTRON CR33013
X	6640508	X_6640508_SNP [dm3] X_6746475_SNP [dm6]	G	T	1.083e^-4	0.902	DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA
X	6640554	X_6640554_SNP [dm3] X_6746521_SNP [dm6]	G	A	1.083e^-4	0.902	DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA
2L	13676413	2L_13676413_SNP [dm3] 2L_13676413_SNP [dm6]	T	G	1.088e^-4	0.902	DOWNSTREAM CG31814 INTERGENIC
2R	16760728	2R_16760728_SNP [dm3] 2R_20873223_SNP [dm6]	A	C	1.093e^-4	0.902	INTRON Ipk1	TF binding site mE1_TFBS_cad
3R	18953669	3R_18953669_SNP [dm3] 3R_23127947_SNP [dm6]	G	A	1.097e^-4	0.902	UTR_5_PRIME CG31457 DOWNSTREAM hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3L	11927509	3L_11927509_SNP [dm3] 3L_11934409_SNP [dm6]	T	C	1.114e^-4	0.902	NON_SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13698019	2R_13698019_SNP [dm3] 2R_17810514_SNP [dm6]	T	A	1.120e^-4	0.902	INTRON grh	TF binding site mE1_TFBS_chinmo
2L	10915181	2L_10915181_SNP [dm3] 2L_10915181_SNP [dm6]	A	C	1.127e^-4	0.902	INTERGENIC
2R	19207015	2R_19207015_SNP [dm3] 2R_23319492_SNP [dm6]	C	T	1.130e^-4	0.902	UPSTREAM CG30412 INTERGENIC
2R	19207032	2R_19207032_SNP [dm3] 2R_23319509_SNP [dm6]	G	A	1.130e^-4	0.902	UPSTREAM CG30412 INTERGENIC
2L	5117533	2L_5117533_SNP [dm3] 2L_5117533_SNP [dm6]	T	G	1.131e^-4	0.902	INTRON Msp300
2L	5117559	2L_5117559_SNP [dm3] 2L_5117559_SNP [dm6]	C	T	1.131e^-4	0.902	INTRON Msp300
2L	19802392	2L_19802392_SNP [dm3] 2L_19802392_SNP [dm6]	C	T	1.135e^-4	0.902	INTRON sick
2L	19802397	2L_19802397_SNP [dm3] 2L_19802397_SNP [dm6]	T	A	1.135e^-4	0.902	INTRON sick
2R	18950195	2R_18950195_SNP [dm3] 2R_23062672_SNP [dm6]	G	T	1.144e^-4	0.902	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	14814092	3L_14814092_SNP [dm3] 3L_14820992_SNP [dm6]	T	A	1.145e^-4	0.902	INTRON CG17839
3L	12830144	3L_12830144_SNP [dm3] 3L_12837044_SNP [dm6]	A	T	1.147e^-4	0.902	INTRON CG10960	TF binding site mE1_TFBS_HSA
3R	11734799	3R_11734799_SNP [dm3] 3R_15909077_SNP [dm6]	T	C	1.148e^-4	0.902	SPLICE_SITE_REGION CG3303 INTRON CG3303
3L	6743737	3L_6743737_SNP [dm3] 3L_6750637_SNP [dm6]	T	C	1.150e^-4	0.902	SYNONYMOUS_CODING velo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
X	19910729	X_19910729_SNP [dm3] X_20016696_SNP [dm6]	A	C	1.153e^-4	0.902	INTRON Dop2R
X	7919261	X_7919261_SNP [dm3] X_8025228_SNP [dm6]	A	C	1.161e^-4	0.902	INTRON Tbh
2R	15301066	2R_15301066_SNP [dm3] 2R_19413561_SNP [dm6]	C	T	1.165e^-4	0.902	DOWNSTREAM snoRNA:hts-a INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	5980876	3L_5980876_SNP [dm3] 3L_5987776_SNP [dm6]	G	A	1.166e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	11020119	3R_11020119_SNP [dm3] 3R_15194397_SNP [dm6]	A	G	1.172e^-4	0.902	SYNONYMOUS_CODING CG6752	TF binding site mE1_TFBS_sens
3R	23134501	3R_23134501_SNP [dm3] 3R_27308779_SNP [dm6]	A	G	1.186e^-4	0.902	SYNONYMOUS_CODING CG3339
2L	11581254	2L_11581254_SNP [dm3] 2L_11581254_SNP [dm6]	T	C	1.193e^-4	0.902	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16889263	2R_16889263_SNP [dm3] 2R_21001758_SNP [dm6]	T	C	1.195e^-4	0.902	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16546135	3L_16546135_SNP [dm3] 3L_16553035_SNP [dm6]	G	A	1.200e^-4	0.902	INTERGENIC
3L	7611990	3L_7611990_SNP [dm3] 3L_7618890_SNP [dm6]	G	A	1.204e^-4	0.902	INTRON CG33275
3R	13064161	3R_13064161_SNP [dm3] 3R_17238439_SNP [dm6]	G	T	1.212e^-4	0.902	INTRON beat-IIb
2L	1280286	2L_1280286_SNP [dm3] 2L_1280286_SNP [dm6]	A	G	1.216e^-4	0.902	INTRON robo3
2L	14378731	2L_14378731_SNP [dm3] 2L_14378731_SNP [dm6]	G	C	1.230e^-4	0.902	UTR_3_PRIME ppk
2L	4213902	2L_4213902_SNP [dm3] 2L_4213902_SNP [dm6]	G	T	1.237e^-4	0.902	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	19679345	2L_19679345_SNP [dm3] 2L_19679345_SNP [dm6]	C	T	1.243e^-4	0.902	INTRON Lar
2L	19679380	2L_19679380_SNP [dm3] 2L_19679380_SNP [dm6]	T	G	1.243e^-4	0.902	INTRON Lar
3L	1068671	3L_1068671_SNP [dm3] 3L_1068671_SNP [dm6]	G	A	1.255e^-4	0.902	INTRON bab1
X	12431730	X_12431730_SNP [dm3] X_12537697_SNP [dm6]	C	T	1.259e^-4	0.902	INTRON CG43921
2L	8662761	2L_8662761_SNP [dm3] 2L_8662761_SNP [dm6]	C	T	1.262e^-4	0.902	INTRON Sema-1a
2L	8662762	2L_8662762_SNP [dm3] 2L_8662762_SNP [dm6]	A	C	1.262e^-4	0.902	INTRON Sema-1a
2L	8662768	2L_8662768_SNP [dm3] 2L_8662768_SNP [dm6]	C	T	1.262e^-4	0.902	INTRON Sema-1a
2R	19206958	2R_19206958_SNP [dm3] 2R_23319435_SNP [dm6]	G	A	1.267e^-4	0.902	UPSTREAM CG30412 INTERGENIC
3R	16817761	3R_16817761_SNP [dm3] 3R_20992039_SNP [dm6]	G	T	1.271e^-4	0.902	INTRON Calx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15291776	2R_15291776_SNP [dm3] 2R_19404271_SNP [dm6]	T	G	1.273e^-4	0.902	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17026065	3L_17026065_SNP [dm3] 3L_17032965_SNP [dm6]	T	A	1.276e^-4	0.902	UPSTREAM Ilp8 & 1 other DOWNSTREAM CR43250 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	1.287e^-4	0.902	INTRON sick
2L	19914482	2L_19914482_SNP [dm3] 2L_19914482_SNP [dm6]	T	C	1.290e^-4	0.902	UPSTREAM Victoria INTRON sick
2L	5125729	2L_5125729_SNP [dm3] 2L_5125729_SNP [dm6]	G	A	1.300e^-4	0.902	INTRON Msp300	TF binding site mE1_TFBS_cad
X	14787082	X_14787082_SNP [dm3] X_14893049_SNP [dm6]	G	T	1.307e^-4	0.902	INTRON Flo2 & 1 other
3L	6293699	3L_6293699_SNP [dm3] 3L_6300599_SNP [dm6]	T	A	1.308e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	15034903	2L_15034903_SNP [dm3] 2L_15034903_SNP [dm6]	G	A	1.310e^-4	0.902	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
3R	16353837	3R_16353837_SNP [dm3] 3R_20528115_SNP [dm6]	C	T	1.313e^-4	0.902	INTERGENIC
3R	11019524	3R_11019524_SNP [dm3] 3R_15193802_SNP [dm6]	T	G	1.314e^-4	0.902	SYNONYMOUS_CODING CG6752
3R	11019620	3R_11019620_SNP [dm3] 3R_15193898_SNP [dm6]	A	G	1.314e^-4	0.902	SYNONYMOUS_CODING CG6752
2R	18295899	2R_18295899_SNP [dm3] 2R_22408394_SNP [dm6]	G	C	1.320e^-4	0.902	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D DOWNSTREAM qkr58E-3 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15291737	2R_15291737_SNP [dm3] 2R_19404232_SNP [dm6]	C	T	1.321e^-4	0.902	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21867224	3R_21867224_SNP [dm3] 3R_26041502_SNP [dm6]	A	T	1.324e^-4	0.902	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2L	15399458	2L_15399458_SNP [dm3] 2L_15399458_SNP [dm6]	A	C	1.327e^-4	0.902	UPSTREAM CR45373 DOWNSTREAM CR44860 & 1 other INTERGENIC
2R	9104401	2R_9104401_SNP [dm3] 2R_13216896_SNP [dm6]	T	G	1.378e^-4	0.902	SYNONYMOUS_CODING CG4630	TF binding site mE1_TFBS_cad
3L	8359050	3L_8359050_SNP [dm3] 3L_8365950_SNP [dm6]	A	G	1.383e^-4	0.902	INTERGENIC
2L	3113735	2L_3113735_SNP [dm3] 2L_3113735_SNP [dm6]	C	A	1.384e^-4	0.902	INTRON toc
2R	8716603	2R_8716603_SNP [dm3] 2R_12829098_SNP [dm6]	C	T	1.386e^-4	0.902	INTERGENIC
3L	2674121	3L_2674121_SNP [dm3] 3L_2674121_SNP [dm6]	C	T	1.402e^-4	0.902	INTRON Fife
3L	2674141	3L_2674141_SNP [dm3] 3L_2674141_SNP [dm6]	C	A	1.402e^-4	0.902	INTRON Fife
3L	1869102	3L_1869102_SNP [dm3] 3L_1869102_SNP [dm6]	C	G	1.405e^-4	0.902	UTR_3_PRIME CG12025 UPSTREAM CG13924 DOWNSTREAM CG12025
2L	1337347	2L_1337347_SNP [dm3] 2L_1337347_SNP [dm6]	A	C	1.411e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2671037	3L_2671037_SNP [dm3] 3L_2671037_SNP [dm6]	T	A	1.413e^-4	0.902	UTR_3_PRIME Fife INTRON Fife
2R	19347084	2R_19347084_SNP [dm3] 2R_23459561_SNP [dm6]	G	T	1.440e^-4	0.902	UPSTREAM skpF INTRON CG43795
2R	14185246	2R_14185246_SNP [dm3] 2R_18297741_SNP [dm6]	A	G	1.450e^-4	0.902	NON_SYNONYMOUS_CODING CG18538 UPSTREAM CG18539 INTRON sbb
3R	25199621	3R_25199621_SNP [dm3] 3R_29373899_SNP [dm6]	T	A	1.451e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	19282500	3L_19282500_SNP [dm3] 3L_19289400_SNP [dm6]	C	G	1.468e^-4	0.902	UPSTREAM Gbs-76A INTRON Gbs-76A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1985531	2L_1985531_SNP [dm3] 2L_1985531_SNP [dm6]	G	A	1.474e^-4	0.902	SYNONYMOUS_CODING Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14462043	3R_14462043_SNP [dm3] 3R_18636321_SNP [dm6]	G	A	1.474e^-4	0.902	INTRON qin & 1 other
3L	8359085	3L_8359085_SNP [dm3] 3L_8365985_SNP [dm6]	G	C	1.475e^-4	0.902	INTERGENIC
2L	13259567	2L_13259567_SNP [dm3] 2L_13259567_SNP [dm6]	G	T	1.479e^-4	0.902	SYNONYMOUS_CODING CG31730 DOWNSTREAM CG31851
2R	2409735	2R_2409735_SNP [dm3] 2R_6522230_SNP [dm6]	G	A	1.482e^-4	0.902	INTRON jing
2L	20042346	2L_20042346_SNP [dm3] 2L_20042346_SNP [dm6]	G	A	1.491e^-4	0.902	INTRON sNPF
2L	20107658	2L_20107658_DEL [dm3] 2L_20107658_DEL [dm6]	GGCTGTGG	G	1.501e^-4	0.902	INTERGENIC	transposable element FlyBase
2L	5359619	2L_5359619_SNP [dm3] 2L_5359619_SNP [dm6]	A	G	1.511e^-4	0.902	SYNONYMOUS_CODING nompC	TF binding site mE1_TFBS_cad
2R	19178928	2R_19178928_DEL [dm3] 2R_23291405_DEL [dm6]	GT	G	1.519e^-4	0.902	UPSTREAM CR44783 INTERGENIC
2L	1277417	2L_1277417_SNP [dm3] 2L_1277417_SNP [dm6]	G	A	1.546e^-4	0.902	INTRON robo3
3R	13067377	3R_13067377_SNP [dm3] 3R_17241655_SNP [dm6]	G	A	1.551e^-4	0.902	INTRON beat-IIb
3L	6298239	3L_6298239_SNP [dm3] 3L_6305139_SNP [dm6]	T	A	1.563e^-4	0.902	UPSTREAM CR45113 EXON CR45114	TF binding site mE1_TFBS_cad
3L	1356011	3L_1356011_SNP [dm3] 3L_1356011_SNP [dm6]	G	A	1.565e^-4	0.902	INTRON Ptp61F	TF binding site mE1_TFBS_inv
3R	13023842	3R_13023842_SNP [dm3] 3R_17198120_SNP [dm6]	G	T	1.572e^-4	0.902	INTRON Mur89F
2L	18443163	2L_18443163_SNP [dm3] 2L_18443163_SNP [dm6]	A	G	1.573e^-4	0.902	UTR_5_PRIME RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
2R	19974721	2R_19974721_SNP [dm3] 2R_24087198_SNP [dm6]	C	T	1.576e^-4	0.902	DOWNSTREAM CG16786 INTRON snama	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16887805	2R_16887805_SNP [dm3] 2R_21000300_SNP [dm6]	T	C	1.576e^-4	0.902	UPSTREAM CG10543 INTRON CG10543	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	21062948	2L_21062948_SNP [dm3] 2L_21062948_SNP [dm6]	T	A	1.581e^-4	0.902	INTRON CG9265
2L	13254005	2L_13254005_SNP [dm3] 2L_13254005_SNP [dm6]	C	T	1.586e^-4	0.902	INTRON CG31728
X	8075629	X_8075629_SNP [dm3] X_8181596_SNP [dm6]	A	T	1.587e^-4	0.902	INTRON sdt
2R	19347067	2R_19347067_SNP [dm3] 2R_23459544_SNP [dm6]	A	T	1.595e^-4	0.902	UPSTREAM skpF INTRON CG43795
3L	16931397	3L_16931397_SNP [dm3] 3L_16938297_SNP [dm6]	G	C	1.608e^-4	0.902	DOWNSTREAM CG13022 & 1 other INTERGENIC
3R	23135651	3R_23135651_SNP [dm3] 3R_27309929_SNP [dm6]	T	C	1.609e^-4	0.902	INTRON CG3339
2L	17559917	2L_17559917_DEL [dm3] 2L_17559917_DEL [dm6]	TT	T	1.615e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	14004472	2L_14004472_SNP [dm3] 2L_14004472_SNP [dm6]	T	G	1.617e^-4	0.902	INTERGENIC
2R	11045842	2R_11045842_SNP [dm3] 2R_15158337_SNP [dm6]	C	T	1.621e^-4	0.902	DOWNSTREAM CR43831 INTRON igl
2L	19370740	2L_19370740_SNP [dm3] 2L_19370740_SNP [dm6]	A	G	1.629e^-4	0.902	INTRON CG17349
3L	2548614	3L_2548614_SNP [dm3] 3L_2548614_SNP [dm6]	C	T	1.638e^-4	0.902	INTRON Spn
2L	13256618	2L_13256618_SNP [dm3] 2L_13256618_SNP [dm6]	C	T	1.640e^-4	0.902	SPLICE_SITE_REGION CG31728 UPSTREAM CG31851 INTRON CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	10565804	2L_10565804_SNP [dm3] 2L_10565804_SNP [dm6]	A	G	1.642e^-4	0.902	INTRON Trim9
2L	10565826	2L_10565826_SNP [dm3] 2L_10565826_SNP [dm6]	C	T	1.642e^-4	0.902	INTRON Trim9
2L	10565833	2L_10565833_SNP [dm3] 2L_10565833_SNP [dm6]	C	T	1.642e^-4	0.902	INTRON Trim9
2L	10565836	2L_10565836_SNP [dm3] 2L_10565836_SNP [dm6]	G	C	1.642e^-4	0.902	INTRON Trim9
2L	1034402	2L_1034402_DEL [dm3] 2L_1034402_DEL [dm6]	CAACCCATTCC...	C	1.648e^-4	0.902	FRAME_SHIFT IA-2 SPLICE_SITE_REGION IA-2 INTRON IA-2
2L	19698132	2L_19698132_SNP [dm3] 2L_19698132_SNP [dm6]	G	A	1.649e^-4	0.902	INTRON Lar
3L	11927250	3L_11927250_SNP [dm3] 3L_11934150_SNP [dm6]	T	C	1.652e^-4	0.902	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19448824	X_19448824_SNP [dm3] X_19554791_SNP [dm6]	G	T	1.661e^-4	0.902	INTERGENIC
3L	15635477	3L_15635477_SNP [dm3] 3L_15642377_SNP [dm6]	T	A	1.664e^-4	0.902	INTRON comm3
2R	3083913	2R_3083913_SNP [dm3] 2R_7196408_SNP [dm6]	A	T	1.666e^-4	0.902	INTRON pk
3L	14086751	3L_14086751_DEL [dm3] 3L_14093651_DEL [dm6]	TTTTATAATAAT...	T	1.668e^-4	0.902	DOWNSTREAM Fbp1 INTERGENIC
3L	2680714	3L_2680714_SNP [dm3] 3L_2680714_SNP [dm6]	G	A	1.671e^-4	0.902	INTRON Fife
2L	1982120	2L_1982120_SNP [dm3] 2L_1982120_SNP [dm6]	G	T	1.673e^-4	0.902	UPSTREAM CG7289 DOWNSTREAM CG15362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
3L	3773401	3L_3773401_SNP [dm3] 3L_3773401_SNP [dm6]	A	G	1.687e^-4	0.902	INTRON CG32264
3L	738586	3L_738586_SNP [dm3] 3L_738586_SNP [dm6]	T	G	1.687e^-4	0.902	SYNONYMOUS_CODING hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	10318537	2L_10318537_SNP [dm3] 2L_10318537_SNP [dm6]	A	G	1.688e^-4	0.902	SYNONYMOUS_CODING CG5381 DOWNSTREAM CG4972	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4680117	2L_4680117_SNP [dm3] 2L_4680117_SNP [dm6]	C	T	1.688e^-4	0.902	INTERGENIC
2L	14378792	2L_14378792_SNP [dm3] 2L_14378792_SNP [dm6]	A	T	1.688e^-4	0.902	UTR_3_PRIME ppk
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	1.695e^-4	0.902	INTRON Lar
3R	20471092	3R_20471092_SNP [dm3] 3R_24645370_SNP [dm6]	C	A	1.696e^-4	0.902	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10319602	2L_10319602_SNP [dm3] 2L_10319602_SNP [dm6]	A	G	1.701e^-4	0.902	INTRON CG5381
2L	11577656	2L_11577656_SNP [dm3] 2L_11577656_SNP [dm6]	C	A	1.703e^-4	0.902	INTERGENIC
2L	11577660	2L_11577660_SNP [dm3] 2L_11577660_SNP [dm6]	T	G	1.703e^-4	0.902	INTERGENIC
2L	9850440	2L_9850440_SNP [dm3] 2L_9850440_SNP [dm6]	A	G	1.706e^-4	0.902	INTRON nAChRalpha6
3R	14819254	3R_14819254_SNP [dm3] 3R_18993532_SNP [dm6]	T	C	1.727e^-4	0.902	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	17566804	2L_17566804_SNP [dm3] 2L_17566804_SNP [dm6]	T	G	1.729e^-4	0.902	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	13677072	2L_13677072_DEL [dm3] 2L_13677072_DEL [dm6]	TCAT	T	1.736e^-4	0.902	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
2R	15300674	2R_15300674_SNP [dm3] 2R_19413169_SNP [dm6]	C	T	1.745e^-4	0.902	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	8802442	3L_8802442_SNP [dm3] 3L_8809342_SNP [dm6]	G	C	1.753e^-4	0.902	DOWNSTREAM CG32024 & 1 other INTERGENIC
3R	4365663	3R_4365663_SNP [dm3] 3R_8539941_SNP [dm6]	C	T	1.761e^-4	0.902	INTERGENIC
2R	10955753	2R_10955753_SNP [dm3] 2R_15068248_SNP [dm6]	A	C	1.765e^-4	0.902	INTERGENIC
3L	10683104	3L_10683104_SNP [dm3] 3L_10690004_SNP [dm6]	G	A	1.776e^-4	0.902	UTR_3_PRIME simj DOWNSTREAM simj
2L	3113718	2L_3113718_SNP [dm3] 2L_3113718_SNP [dm6]	A	T	1.777e^-4	0.902	INTRON toc
X	15125593	X_15125593_SNP [dm3] X_15231560_SNP [dm6]	T	C	1.778e^-4	0.902	INTERGENIC
3R	15025894	3R_15025894_SNP [dm3] 3R_19200172_SNP [dm6]	C	T	1.783e^-4	0.902	SYNONYMOUS_CODING CG31475
2L	1051504	2L_1051504_SNP [dm3] 2L_1051504_SNP [dm6]	G	A	1.787e^-4	0.902	UTR_3_PRIME S DOWNSTREAM S
2L	5125767	2L_5125767_SNP [dm3] 2L_5125767_SNP [dm6]	C	A	1.788e^-4	0.902	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	13677079	2L_13677079_SNP [dm3] 2L_13677079_SNP [dm6]	C	T	1.789e^-4	0.902	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
3L	6075718	3L_6075718_SNP [dm3] 3L_6082618_SNP [dm6]	C	T	1.807e^-4	0.902	UPSTREAM CG13293 DOWNSTREAM CG6619 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	1728302	X_1728302_SNP [dm3] X_1834269_SNP [dm6]	A	C	1.807e^-4	0.902	INTRON CG42666
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	1.812e^-4	0.902	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	2630631	2L_2630631_SNP [dm3] 2L_2630631_SNP [dm6]	C	G	1.820e^-4	0.902	INTERGENIC
2R	12476817	2R_12476817_SNP [dm3] 2R_16589312_SNP [dm6]	C	G	1.842e^-4	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12342391	2R_12342391_SNP [dm3] 2R_16454886_SNP [dm6]	G	A	1.870e^-4	0.902	INTERGENIC
2L	10149738	2L_10149738_SNP [dm3] 2L_10149738_SNP [dm6]	G	A	1.877e^-4	0.902	INTRON CG44153 & 1 other
2L	10149740	2L_10149740_SNP [dm3] 2L_10149740_SNP [dm6]	A	T	1.877e^-4	0.902	INTRON CG44153 & 1 other
3R	21867252	3R_21867252_SNP [dm3] 3R_26041530_SNP [dm6]	T	G	1.877e^-4	0.902	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_jumu mE1_TFBS_Trl
2R	19647464	2R_19647464_SNP [dm3] 2R_23759941_SNP [dm6]	G	A	1.885e^-4	0.902	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	17328220	2R_17328220_SNP [dm3] 2R_21440715_SNP [dm6]	A	T	1.888e^-4	0.902	INTRON Sdc
2L	3071272	2L_3071272_SNP [dm3] 2L_3071272_SNP [dm6]	C	T	1.888e^-4	0.902	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11581213	2L_11581213_SNP [dm3] 2L_11581213_SNP [dm6]	A	T	1.912e^-4	0.902	UPSTREAM kek2 INTERGENIC
2L	1678309	2L_1678309_SNP [dm3] 2L_1678309_SNP [dm6]	A	C	1.931e^-4	0.902	INTRON chinmo
3L	8841644	3L_8841644_SNP [dm3] 3L_8848544_SNP [dm6]	A	G	1.935e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA
2R	6758939	2R_6758939_SNP [dm3] 2R_10871434_SNP [dm6]	C	A	1.953e^-4	0.902	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1746794	2L_1746794_DEL [dm3] 2L_1746794_DEL [dm6]	AA	A	1.959e^-4	0.902	INTRON CG17646
3R	22684539	3R_22684539_SNP [dm3] 3R_26858817_SNP [dm6]	T	C	1.960e^-4	0.902	INTRON Lerp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12293671	2R_12293671_SNP [dm3] 2R_16406166_SNP [dm6]	T	A	1.962e^-4	0.902	INTRON Sema-2b
2L	10858258	2L_10858258_SNP [dm3] 2L_10858258_SNP [dm6]	C	T	1.963e^-4	0.902	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	1985699	2L_1985699_SNP [dm3] 2L_1985699_SNP [dm6]	G	A	1.965e^-4	0.902	SYNONYMOUS_CODING Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7550804	2R_7550804_SNP [dm3] 2R_11663299_SNP [dm6]	T	G	1.970e^-4	0.902	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7550839	2R_7550839_INS [dm3] 2R_11663334_INS [dm6]	T	TT	1.970e^-4	0.902	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7550848	2R_7550848_SNP [dm3] 2R_11663343_SNP [dm6]	C	G	1.970e^-4	0.902	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	8424359	X_8424359_SNP [dm3] X_8530326_SNP [dm6]	G	A	1.977e^-4	0.902	UPSTREAM PIP82 INTRON Nrg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	3930650	3L_3930650_SNP [dm3] 3L_3930650_SNP [dm6]	T	A	1.986e^-4	0.902	INTRON Eip63F-1
3R	21677317	3R_21677317_SNP [dm3] 3R_25851595_SNP [dm6]	C	A	1.989e^-4	0.902	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	23537216	3R_23537216_SNP [dm3] 3R_27711494_SNP [dm6]	A	T	1.998e^-4	0.902	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	6729096	2R_6729096_SNP [dm3] 2R_10841591_SNP [dm6]	C	T	2.022e^-4	0.902	NON_SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
X	12431811	X_12431811_SNP [dm3] X_12537778_SNP [dm6]	A	G	2.023e^-4	0.902	INTRON CG43921
3R	13045722	3R_13045722_SNP [dm3] 3R_17220000_SNP [dm6]	T	A	2.024e^-4	0.902	UPSTREAM CG31262 INTRON CG31262
2L	6865871	2L_6865871_SNP [dm3] 2L_6865871_SNP [dm6]	A	T	2.031e^-4	0.902	INTRON Nha1
2R	13212974	2R_13212974_SNP [dm3] 2R_17325469_SNP [dm6]	T	C	2.043e^-4	0.902	INTRON mbl
2L	11577808	2L_11577808_SNP [dm3] 2L_11577808_SNP [dm6]	A	T	2.088e^-4	0.902	INTERGENIC
2L	11558206	2L_11558206_SNP [dm3] 2L_11558206_SNP [dm6]	A	G	2.088e^-4	0.902	INTERGENIC
2L	11558297	2L_11558297_SNP [dm3] 2L_11558297_SNP [dm6]	A	G	2.088e^-4	0.902	INTERGENIC
2R	6058193	2R_6058193_SNP [dm3] 2R_10170688_SNP [dm6]	A	G	2.093e^-4	0.902	INTRON KCNQ
2R	18322984	2R_18322984_SNP [dm3] 2R_22435479_SNP [dm6]	T	C	2.103e^-4	0.902	INTERGENIC
3L	8656735	3L_8656735_SNP [dm3] 3L_8663635_SNP [dm6]	C	T	2.113e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2R	17689397	2R_17689397_SNP [dm3] 2R_21801892_SNP [dm6]	G	A	2.114e^-4	0.902	UPSTREAM CG4386 INTERGENIC
2L	19801191	2L_19801191_SNP [dm3] 2L_19801191_SNP [dm6]	A	G	2.132e^-4	0.902	INTRON sick
2L	10994267	2L_10994267_INS [dm3] 2L_10994267_INS [dm6]	T	TACT	2.154e^-4	0.902	UTR_3_PRIME CG16833 INTRON CG16833
2R	12476994	2R_12476994_SNP [dm3] 2R_16589489_SNP [dm6]	T	A	2.157e^-4	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	12476999	2R_12476999_SNP [dm3] 2R_16589494_SNP [dm6]	C	T	2.157e^-4	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	11562868	2L_11562868_SNP [dm3] 2L_11562868_SNP [dm6]	T	C	2.173e^-4	0.902	DOWNSTREAM CR44495 INTERGENIC
2L	16195382	2L_16195382_SNP [dm3] 2L_16195382_SNP [dm6]	T	A	2.175e^-4	0.902	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
2R	18950138	2R_18950138_SNP [dm3] 2R_23062615_SNP [dm6]	A	T	2.193e^-4	0.902	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	1758373	2L_1758373_SNP [dm3] 2L_1758373_SNP [dm6]	C	T	2.195e^-4	0.902	UTR_3_PRIME CG17650	regulatory region REDfly_CRMs
3R	16953786	3R_16953786_DEL [dm3] 3R_21128064_DEL [dm6]	TG	T	2.201e^-4	0.902	UPSTREAM slmb DOWNSTREAM Obp93a INTRON CG5793	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10192783	2R_10192783_INS [dm3] 2R_14305278_INS [dm6]	T	TATTCAT	2.206e^-4	0.902	INTERGENIC
2R	15301396	2R_15301396_SNP [dm3] 2R_19413891_SNP [dm6]	T	C	2.209e^-4	0.902	UPSTREAM tRNA:S4:56D & 1 other DOWNSTREAM snoRNA:hts-a INTRON hts	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	7550372	2R_7550372_SNP [dm3] 2R_11662867_SNP [dm6]	G	A	2.214e^-4	0.902	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5899631	3L_5899631_SNP [dm3] 3L_5906531_SNP [dm6]	C	T	2.220e^-4	0.902	SYNONYMOUS_CODING CG10486 UPSTREAM CG13288	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14152067	3L_14152067_SNP [dm3] 3L_14158967_SNP [dm6]	A	C	2.225e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
3L	16425350	3L_16425350_SNP [dm3] 3L_16432250_SNP [dm6]	G	C	2.228e^-4	0.902	INTRON CG33158 & 1 other
3R	15156377	3R_15156377_SNP [dm3] 3R_19330655_SNP [dm6]	T	C	2.231e^-4	0.902	EXON CR43258	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7276944	3L_7276944_SNP [dm3] 3L_7283844_SNP [dm6]	C	G	2.232e^-4	0.902	INTRON unc-13-4A
X	8661138	X_8661138_SNP [dm3] X_8767105_SNP [dm6]	A	G	2.233e^-4	0.902	INTRON Lim1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13261758	2L_13261758_SNP [dm3] 2L_13261758_SNP [dm6]	G	T	2.242e^-4	0.902	INTRON CG44085
2R	14535763	2R_14535763_SNP [dm3] 2R_18648258_SNP [dm6]	C	G	2.249e^-4	0.902	INTRON SP2637	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	2.256e^-4	0.902	INTRON sick
3L	13670976	3L_13670976_SNP [dm3] 3L_13677876_SNP [dm6]	T	A	2.264e^-4	0.902	INTRON bru-3
3L	7612048	3L_7612048_SNP [dm3] 3L_7618948_SNP [dm6]	A	C	2.266e^-4	0.902	INTRON CG33275
3R	14809461	3R_14809461_SNP [dm3] 3R_18983739_SNP [dm6]	G	A	2.286e^-4	0.902	UPSTREAM gukh & 1 other DOWNSTREAM dnk INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2R	3170830	2R_3170830_SNP [dm3] 2R_7283325_SNP [dm6]	G	C	2.291e^-4	0.902	UTR_5_PRIME pwn INTRON pwn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16682499	2R_16682499_SNP [dm3] 2R_20794994_SNP [dm6]	A	G	2.291e^-4	0.902	INTERGENIC
3L	3908788	3L_3908788_SNP [dm3] 3L_3908788_SNP [dm6]	G	A	2.299e^-4	0.902	UTR_3_PRIME mge DOWNSTREAM ida INTRON mge	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	2.305e^-4	0.902	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	14735898	X_14735898_SNP [dm3] X_14841865_SNP [dm6]	A	G	2.348e^-4	0.902	DOWNSTREAM CG12539 INTRON Flo2	TF binding site mE1_TFBS_HSA
2L	11574898	2L_11574898_SNP [dm3] 2L_11574898_SNP [dm6]	T	A	2.350e^-4	0.902	INTERGENIC
3L	8437816	3L_8437816_SNP [dm3] 3L_8444716_SNP [dm6]	T	C	2.362e^-4	0.902	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2595558	3L_2595558_SNP [dm3] 3L_2595558_SNP [dm6]	T	C	2.362e^-4	0.902	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182
2R	16689706	2R_16689706_SNP [dm3] 2R_20802201_SNP [dm6]	A	G	2.367e^-4	0.902	INTERGENIC
2L	20530576	2L_20530576_SNP [dm3] 2L_20530576_SNP [dm6]	G	A	2.386e^-4	0.902	UPSTREAM CG44270 INTERGENIC
3L	5720313	3L_5720313_SNP [dm3] 3L_5727213_SNP [dm6]	T	A	2.391e^-4	0.902	INTRON sif
3R	16899088	3R_16899088_SNP [dm3] 3R_21073366_SNP [dm6]	C	T	2.392e^-4	0.902	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	11577900	2L_11577900_SNP [dm3] 2L_11577900_SNP [dm6]	T	A	2.392e^-4	0.902	INTERGENIC
2L	15326389	2L_15326389_SNP [dm3] 2L_15326389_SNP [dm6]	C	T	2.394e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	11934831	3L_11934831_SNP [dm3] 3L_11941731_SNP [dm6]	T	C	2.402e^-4	0.902	UPSTREAM Rpt4R INTERGENIC
2L	1235976	2L_1235976_SNP [dm3] 2L_1235976_SNP [dm6]	A	G	2.402e^-4	0.902	INTERGENIC
2L	11558243	2L_11558243_DEL [dm3] 2L_11558243_DEL [dm6]	GTAACAATTACTCATATAAG...	G	2.405e^-4	0.902	INTERGENIC
X	12162487	X_12162487_INS [dm3] X_12268454_INS [dm6]	G	GCGTGTGTG	2.418e^-4	0.902	INTRON Ten-a
3R	17521056	3R_17521056_SNP [dm3] 3R_21695334_SNP [dm6]	G	C	2.423e^-4	0.902	INTRON CG31176
3R	17521123	3R_17521123_SNP [dm3] 3R_21695401_SNP [dm6]	G	T	2.423e^-4	0.902	INTRON CG31176
3R	17521151	3R_17521151_SNP [dm3] 3R_21695429_SNP [dm6]	C	T	2.423e^-4	0.902	INTRON CG31176
3L	9741704	3L_9741704_SNP [dm3] 3L_9748604_SNP [dm6]	T	G	2.426e^-4	0.902	SYNONYMOUS_CODING CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13646051	3R_13646051_SNP [dm3] 3R_17820329_SNP [dm6]	G	A	2.426e^-4	0.902	INTRON tinc
X	15215720	X_15215720_SNP [dm3] X_15321687_SNP [dm6]	G	T	2.443e^-4	0.902	INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13261761	2L_13261761_SNP [dm3] 2L_13261761_SNP [dm6]	A	G	2.462e^-4	0.902	INTRON CG44085
3R	14601278	3R_14601278_SNP [dm3] 3R_18775556_SNP [dm6]	A	C	2.470e^-4	0.902	INTRON CG7720
2L	14550924	2L_14550924_SNP [dm3] 2L_14550924_SNP [dm6]	G	A	2.480e^-4	0.902	EXON CR44853	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10565847	2L_10565847_SNP [dm3] 2L_10565847_SNP [dm6]	A	T	2.505e^-4	0.902	INTRON Trim9
2L	11577563	2L_11577563_SNP [dm3] 2L_11577563_SNP [dm6]	A	T	2.520e^-4	0.902	INTERGENIC
2R	9458027	2R_9458027_SNP [dm3] 2R_13570522_SNP [dm6]	C	T	2.523e^-4	0.902	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
3R	20843912	3R_20843912_SNP [dm3] 3R_25018190_SNP [dm6]	G	T	2.540e^-4	0.902	SYNONYMOUS_CODING tnc
2L	16471787	2L_16471787_SNP [dm3] 2L_16471787_SNP [dm6]	T	A	2.546e^-4	0.902	INTRON dac
2L	17602378	2L_17602378_SNP [dm3] 2L_17602378_SNP [dm6]	T	A	2.550e^-4	0.902	SYNONYMOUS_CODING Sytalpha
2L	8662749	2L_8662749_SNP [dm3] 2L_8662749_SNP [dm6]	G	A	2.551e^-4	0.902	INTRON Sema-1a
3L	2402631	3L_2402631_SNP [dm3] 3L_2402631_SNP [dm6]	A	G	2.553e^-4	0.902	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
2R	6230490	2R_6230490_SNP [dm3] 2R_10342985_SNP [dm6]	T	A	2.555e^-4	0.902	INTRON CG42732
2R	6146380	2R_6146380_SNP [dm3] 2R_10258875_SNP [dm6]	G	C	2.558e^-4	0.902	INTRON CG12911	TF binding site mE1_TFBS_cad
2L	19823921	2L_19823921_SNP [dm3] 2L_19823921_SNP [dm6]	T	C	2.560e^-4	0.902	INTRON sick
3L	19145852	3L_19145852_SNP [dm3] 3L_19152752_SNP [dm6]	A	T	2.575e^-4	0.902	INTRON fz2	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
X	14733105	X_14733105_SNP [dm3] X_14839072_SNP [dm6]	A	T	2.579e^-4	0.902	UTR_5_PRIME CG32590 UPSTREAM CG14407 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
2L	13259761	2L_13259761_SNP [dm3] 2L_13259761_SNP [dm6]	C	T	2.580e^-4	0.902	UPSTREAM CG31730 INTERGENIC
3R	16679842	3R_16679842_SNP [dm3] 3R_20854120_SNP [dm6]	A	G	2.581e^-4	0.902	SYNONYMOUS_CODING Ir93a UPSTREAM mir-1011
2R	18322962	2R_18322962_SNP [dm3] 2R_22435457_SNP [dm6]	A	T	2.590e^-4	0.902	INTERGENIC
2R	19178884	2R_19178884_DEL [dm3] 2R_23291361_DEL [dm6]	CAATCGTCATCAAATGGAAT...	A	2.593e^-4	0.902	UPSTREAM CR44783 INTERGENIC EXON CR44783
2L	11834958	2L_11834958_SNP [dm3] 2L_11834958_SNP [dm6]	T	C	2.593e^-4	0.902	UPSTREAM CR45013 DOWNSTREAM CG45011 & 1 other INTRON Pde1c
2L	11579332	2L_11579332_SNP [dm3] 2L_11579332_SNP [dm6]	A	T	2.594e^-4	0.902	INTERGENIC
2L	3069864	2L_3069864_SNP [dm3] 2L_3069864_SNP [dm6]	G	A	2.599e^-4	0.902	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	5099856	X_5099856_SNP [dm3] X_5205823_SNP [dm6]	A	C	2.611e^-4	0.902	INTRON CG15465 & 1 other
2L	11303080	2L_11303080_SNP [dm3] 2L_11303080_SNP [dm6]	C	T	2.618e^-4	0.902	INTERGENIC
3L	7285586	3L_7285586_SNP [dm3] 3L_7292486_SNP [dm6]	C	T	2.626e^-4	0.902	INTRON unc-13-4A
2L	2805681	2L_2805681_SNP [dm3] 2L_2805681_SNP [dm6]	C	A	2.637e^-4	0.902	INTRON daw	TF binding site mE1_TFBS_Trl
3R	24162338	3R_24162338_SNP [dm3] 3R_28336616_SNP [dm6]	G	A	2.651e^-4	0.902	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	24162344	3R_24162344_SNP [dm3] 3R_28336622_SNP [dm6]	C	T	2.651e^-4	0.902	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	14510443	2R_14510443_SNP [dm3] 2R_18622938_SNP [dm6]	G	A	2.656e^-4	0.902	UTR_3_PRIME CG5335 INTRON Atg7	TF binding site mE1_TFBS_HSA
X	17628280	X_17628280_SNP [dm3] X_17734247_SNP [dm6]	A	C	2.659e^-4	0.902	INTRON CG42684	TF binding site BDTNP1_TFBS_dl
2L	17560015	2L_17560015_SNP [dm3] 2L_17560015_SNP [dm6]	C	A	2.695e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z
2L	17560020	2L_17560020_SNP [dm3] 2L_17560020_SNP [dm6]	T	G	2.695e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
X	8075630	X_8075630_DEL [dm3] X_8181597_DEL [dm6]	AATGCCCCAAGAC...	A	2.701e^-4	0.902	INTRON sdt
X	8075644	X_8075644_SNP [dm3] X_8181611_SNP [dm6]	G	A	2.701e^-4	0.902	INTRON sdt
3R	968476	3R_968476_INS [dm3] 3R_5142754_INS [dm6]	A	ATAA	2.710e^-4	0.902	INTERGENIC
3L	7472150	3L_7472150_SNP [dm3] 3L_7479050_SNP [dm6]	C	A	2.717e^-4	0.902	INTERGENIC
X	4624076	X_4624076_SNP [dm3] X_4730043_SNP [dm6]	T	C	2.725e^-4	0.902	DOWNSTREAM Proc-R INTERGENIC
3L	8841454	3L_8841454_SNP [dm3] 3L_8848354_SNP [dm6]	A	G	2.732e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2953862	3L_2953862_SNP [dm3] 3L_2953862_SNP [dm6]	T	A	2.733e^-4	0.902	DOWNSTREAM Shab INTRON Shab
X	13135364	X_13135364_SNP [dm3] X_13241331_SNP [dm6]	A	T	2.736e^-4	0.902	INTRON mew
X	6093079	X_6093079_SNP [dm3] X_6199046_SNP [dm6]	T	C	2.743e^-4	0.902	UPSTREAM CG32751 DOWNSTREAM CG43090 INTERGENIC
3R	17071131	3R_17071131_SNP [dm3] 3R_21245409_SNP [dm6]	G	T	2.744e^-4	0.902	UTR_3_PRIME CG5892
3L	715933	3L_715933_SNP [dm3] 3L_715933_SNP [dm6]	A	G	2.750e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13676338	2L_13676338_SNP [dm3] 2L_13676338_SNP [dm6]	T	C	2.757e^-4	0.902	DOWNSTREAM CG31814 INTERGENIC
2R	19206535	2R_19206535_SNP [dm3] 2R_23319012_SNP [dm6]	A	G	2.761e^-4	0.902	SYNONYMOUS_CODING CG30412	TF binding site mE1_TFBS_chinmo
2L	18541511	2L_18541511_SNP [dm3] 2L_18541511_SNP [dm6]	T	C	2.770e^-4	0.902	NON_SYNONYMOUS_CODING Pde11	TF binding site mE1_TFBS_cad
3R	24164471	3R_24164471_SNP [dm3] 3R_28338749_SNP [dm6]	A	G	2.781e^-4	0.902	SYNONYMOUS_CODING Gfat2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2597077	2L_2597077_SNP [dm3] 2L_2597077_SNP [dm6]	T	A	2.781e^-4	0.902	INTERGENIC
3R	11020192	3R_11020192_SNP [dm3] 3R_15194470_SNP [dm6]	C	T	2.793e^-4	0.902	SYNONYMOUS_CODING CG6752	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11577831	2L_11577831_SNP [dm3] 2L_11577831_SNP [dm6]	A	G	2.794e^-4	0.902	INTERGENIC
2R	5051524	2R_5051524_SNP [dm3] 2R_9164019_SNP [dm6]	A	G	2.812e^-4	0.902	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_sens
2R	5051780	2R_5051780_SNP [dm3] 2R_9164275_SNP [dm6]	G	T	2.812e^-4	0.902	SPLICE_SITE_REGION CG8046 INTRON CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2567033	3L_2567033_SNP [dm3] 3L_2567033_SNP [dm6]	A	G	2.823e^-4	0.902	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16905238	3R_16905238_SNP [dm3] 3R_21079516_SNP [dm6]	A	T	2.834e^-4	0.902	INTRON HHEX
2L	7253223	2L_7253223_SNP [dm3] 2L_7253223_SNP [dm6]	T	C	2.836e^-4	0.902	UPSTREAM CG13786 INTERGENIC
X	8714145	X_8714145_SNP [dm3] X_8820112_SNP [dm6]	A	T	2.845e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8202691	3L_8202691_INS [dm3] 3L_8209591_INS [dm6]	C	CTT	2.846e^-4	0.902	UTR_3_PRIME CG32364
2L	3071282	2L_3071282_SNP [dm3] 2L_3071282_SNP [dm6]	C	T	2.855e^-4	0.902	NON_SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9951799	2R_9951799_SNP [dm3] 2R_14064294_SNP [dm6]	A	G	2.856e^-4	0.902	SYNONYMOUS_CODING Prosap	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1981401	2L_1981401_SNP [dm3] 2L_1981401_SNP [dm6]	A	C	2.870e^-4	0.902	NON_SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2R	16243780	2R_16243780_INS [dm3] 2R_20356275_INS [dm6]	A	AAAACGAA	2.873e^-4	0.902	INTERGENIC
3R	5686520	3R_5686520_SNP [dm3] 3R_9860798_SNP [dm6]	T	A	2.877e^-4	0.902	INTRON Teh1
3R	5686534	3R_5686534_INS [dm3] 3R_9860812_INS [dm6]	T	TATTG	2.877e^-4	0.902	INTRON Teh1
3R	5686558	3R_5686558_SNP [dm3] 3R_9860836_SNP [dm6]	C	G	2.877e^-4	0.902	INTRON Teh1
2R	10795396	2R_10795396_SNP [dm3] 2R_14907891_SNP [dm6]	C	T	2.878e^-4	0.902	UTR_5_PRIME CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16979458	2R_16979458_SNP [dm3] 2R_21091953_SNP [dm6]	A	T	2.880e^-4	0.902	UPSTREAM Rbpn-5 & 1 other INTERGENIC
2R	1369649	2R_1369649_SNP [dm3] 2R_5482144_SNP [dm6]	A	C	2.882e^-4	0.902	INTRON CG30440	transposable element FlyBase
3R	10138058	3R_10138058_SNP [dm3] 3R_14312336_SNP [dm6]	T	C	2.898e^-4	0.902	SYNONYMOUS_CODING CG31321
2L	1758365	2L_1758365_SNP [dm3] 2L_1758365_SNP [dm6]	C	A	2.907e^-4	0.902	UTR_3_PRIME CG17650	regulatory region REDfly_CRMs
2R	12878808	2R_12878808_SNP [dm3] 2R_16991303_SNP [dm6]	T	A	2.910e^-4	0.902	INTRON Cbp53E
2L	14378793	2L_14378793_SNP [dm3] 2L_14378793_SNP [dm6]	A	T	2.916e^-4	0.902	UTR_3_PRIME ppk
3R	12136010	3R_12136010_SNP [dm3] 3R_16310288_SNP [dm6]	C	T	2.921e^-4	0.902	DOWNSTREAM Sulf1 INTERGENIC
X	15172935	X_15172935_SNP [dm3] X_15278902_SNP [dm6]	A	G	2.923e^-4	0.902	INTERGENIC
3L	11218635	3L_11218635_SNP [dm3] 3L_11225535_SNP [dm6]	G	C	2.929e^-4	0.902	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7544355	2R_7544355_SNP [dm3] 2R_11656850_SNP [dm6]	T	C	2.940e^-4	0.902	INTRON Roc2
2R	7544358	2R_7544358_SNP [dm3] 2R_11656853_SNP [dm6]	A	G	2.940e^-4	0.902	INTRON Roc2
2R	12476956	2R_12476956_DEL [dm3] 2R_16589451_DEL [dm6]	AT	A	2.941e^-4	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	14185264	2R_14185264_SNP [dm3] 2R_18297759_SNP [dm6]	T	C	2.942e^-4	0.902	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
2L	7073284	2L_7073284_SNP [dm3] 2L_7073284_SNP [dm6]	T	C	2.949e^-4	0.902	INTRON Pvf2
3L	8802468	3L_8802468_SNP [dm3] 3L_8809368_SNP [dm6]	C	T	2.955e^-4	0.902	DOWNSTREAM CG32024 & 1 other INTERGENIC
2L	17560059	2L_17560059_SNP [dm3] 2L_17560059_SNP [dm6]	A	T	2.962e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	20123085	3L_20123085_SNP [dm3] 3L_20129985_SNP [dm6]	T	C	2.965e^-4	0.902	SYNONYMOUS_CODING gig DOWNSTREAM obst-J	TF binding site BDTNP1_TFBS_twi
3L	2682103	3L_2682103_SNP [dm3] 3L_2682103_SNP [dm6]	C	T	2.965e^-4	0.902	INTRON Fife
2R	11000154	2R_11000154_SNP [dm3] 2R_15112649_SNP [dm6]	C	A	2.971e^-4	0.902	INTERGENIC
3R	8743126	3R_8743126_SNP [dm3] 3R_12917404_SNP [dm6]	A	T	2.990e^-4	0.902	INTRON beat-Vb
2L	19798193	2L_19798193_SNP [dm3] 2L_19798193_SNP [dm6]	G	A	2.995e^-4	0.902	INTRON sick
2L	11558204	2L_11558204_SNP [dm3] 2L_11558204_SNP [dm6]	G	C	2.995e^-4	0.902	INTERGENIC
2L	19675350	2L_19675350_SNP [dm3] 2L_19675350_SNP [dm6]	C	T	2.999e^-4	0.902	INTRON Lar
3L	7429271	3L_7429271_SNP [dm3] 3L_7436171_SNP [dm6]	A	C	3.001e^-4	0.902	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	7429272	3L_7429272_SNP [dm3] 3L_7436172_SNP [dm6]	A	C	3.001e^-4	0.902	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	10940157	3L_10940157_SNP [dm3] 3L_10947057_SNP [dm6]	A	T	3.006e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2R	1810315	2R_1810315_SNP [dm3] 2R_5922810_SNP [dm6]	C	T	3.006e^-4	0.902	INTRON CG43366
2L	8642363	2L_8642363_SNP [dm3] 2L_8642363_SNP [dm6]	C	T	3.035e^-4	0.902	INTRON Sema-1a
3L	7611975	3L_7611975_SNP [dm3] 3L_7618875_SNP [dm6]	A	T	3.037e^-4	0.902	INTRON CG33275
3L	8658102	3L_8658102_SNP [dm3] 3L_8665002_SNP [dm6]	C	G	3.045e^-4	0.902	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15352362	3R_15352362_SNP [dm3] 3R_19526640_SNP [dm6]	A	G	3.055e^-4	0.902	SYNONYMOUS_CODING Dys INTRON Dys
2R	9422042	2R_9422042_SNP [dm3] 2R_13534537_SNP [dm6]	A	C	3.064e^-4	0.902	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	4121274	3L_4121274_SNP [dm3] 3L_4121274_SNP [dm6]	T	A	3.064e^-4	0.902	INTRON Chd64
2L	11574272	2L_11574272_INS [dm3] 2L_11574272_INS [dm6]	A	AA	3.065e^-4	0.902	INTERGENIC
4	925536	4_925536_SNP [dm3] 4_904910_SNP [dm6]	C	A	3.069e^-4	0.902	UTR_5_PRIME unc-13 UPSTREAM unc-13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	9177229	X_9177229_SNP [dm3] X_9283196_SNP [dm6]	C	T	3.076e^-4	0.902	UPSTREAM c11.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11577932	2L_11577932_SNP [dm3] 2L_11577932_SNP [dm6]	T	A	3.078e^-4	0.902	INTERGENIC
3R	15764549	3R_15764549_INS [dm3] 3R_19938827_INS [dm6]	G	GAG	3.079e^-4	0.902	INTRON Hs6st
3L	5980903	3L_5980903_SNP [dm3] 3L_5987803_SNP [dm6]	A	G	3.093e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	5980919	3L_5980919_DEL [dm3] 3L_5987819_DEL [dm6]	TGG	A	3.093e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10335623	2L_10335623_SNP [dm3] 2L_10335623_SNP [dm6]	C	T	3.094e^-4	0.902	INTRON GATAd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	6844928	2L_6844928_SNP [dm3] 2L_6844928_SNP [dm6]	A	T	3.096e^-4	0.902	INTERGENIC
2L	19976997	2L_19976997_SNP [dm3] 2L_19976997_SNP [dm6]	G	T	3.106e^-4	0.902	INTRON CG43861
2R	11169221	2R_11169221_SNP [dm3] 2R_15281716_SNP [dm6]	G	T	3.106e^-4	0.902	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10543706	3L_10543706_SNP [dm3] 3L_10550606_SNP [dm6]	A	C	3.121e^-4	0.902	INTRON A2bp1
2R	14185261	2R_14185261_SNP [dm3] 2R_18297756_SNP [dm6]	C	T	3.127e^-4	0.902	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
2R	8799680	2R_8799680_SNP [dm3] 2R_12912175_SNP [dm6]	T	A	3.127e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	16930132	3R_16930132_SNP [dm3] 3R_21104410_SNP [dm6]	T	A	3.128e^-4	0.902	DOWNSTREAM Sec15 INTRON CG5745
3L	18222169	3L_18222169_DEL [dm3] 3L_18229069_DEL [dm6]	AT	A	3.130e^-4	0.902	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10349523	2L_10349523_SNP [dm3] 2L_10349523_SNP [dm6]	G	A	3.132e^-4	0.902	INTRON CG34367
3L	11027430	3L_11027430_SNP [dm3] 3L_11034330_SNP [dm6]	T	C	3.146e^-4	0.902	UPSTREAM CR44547 INTERGENIC
3R	24157567	3R_24157567_SNP [dm3] 3R_28331845_SNP [dm6]	C	T	3.161e^-4	0.902	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	12988576	3R_12988576_SNP [dm3] 3R_17162854_SNP [dm6]	A	G	3.175e^-4	0.902	INTRON Mur89F
3R	15211634	3R_15211634_SNP [dm3] 3R_19385912_SNP [dm6]	A	C	3.175e^-4	0.902	UPSTREAM CR34285 INTRON Ino80	TF binding site BDTNP1_TFBS_twi
2L	11554901	2L_11554901_SNP [dm3] 2L_11554901_SNP [dm6]	C	G	3.208e^-4	0.902	INTERGENIC
2L	11557938	2L_11557938_SNP [dm3] 2L_11557938_SNP [dm6]	A	T	3.208e^-4	0.902	INTERGENIC
2R	17159156	2R_17159156_SNP [dm3] 2R_21271651_SNP [dm6]	T	C	3.226e^-4	0.902	INTRON Rgk3
3L	11438944	3L_11438944_SNP [dm3] 3L_11445844_SNP [dm6]	G	A	3.230e^-4	0.902	SYNONYMOUS_CODING CG7557 UPSTREAM CR44549	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	14733156	X_14733156_SNP [dm3] X_14839123_SNP [dm6]	T	A	3.258e^-4	0.902	UPSTREAM CG14407 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	12291038	3L_12291038_SNP [dm3] 3L_12297938_SNP [dm6]	A	T	3.258e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
3R	10762064	3R_10762064_SNP [dm3] 3R_14936342_SNP [dm6]	A	G	3.295e^-4	0.902	INTERGENIC
X	9177215	X_9177215_SNP [dm3] X_9283182_SNP [dm6]	G	A	3.303e^-4	0.902	UPSTREAM c11.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16720896	3R_16720896_SNP [dm3] 3R_20895174_SNP [dm6]	A	T	3.317e^-4	0.902	UTR_3_PRIME CG10830
2L	428272	2L_428272_SNP [dm3] 2L_428272_SNP [dm6]	A	G	3.322e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_Trl
3L	11935108	3L_11935108_SNP [dm3] 3L_11942008_SNP [dm6]	A	C	3.329e^-4	0.902	UTR_5_PRIME Rpt4R UPSTREAM Rpt4R
3R	13155913	3R_13155913_DEL [dm3] 3R_17330191_DEL [dm6]	TTGGATAC	T	3.329e^-4	0.902	INTRON beat-IIa
2R	10999950	2R_10999950_SNP [dm3] 2R_15112445_SNP [dm6]	T	C	3.334e^-4	0.902	INTERGENIC
3L	2330165	3L_2330165_SNP [dm3] 3L_2330165_SNP [dm6]	A	C	3.343e^-4	0.902	INTRON MsR1
2L	6974778	2L_6974778_SNP [dm3] 2L_6974778_SNP [dm6]	C	A	3.361e^-4	0.902	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3L	11942162	3L_11942162_SNP [dm3] 3L_11949062_SNP [dm6]	C	T	3.372e^-4	0.902	SYNONYMOUS_CODING CG7252 UPSTREAM CG17826	TF binding site mE1_TFBS_cad
3L	1548745	3L_1548745_SNP [dm3] 3L_1548745_SNP [dm6]	A	C	3.400e^-4	0.902	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10279640	2L_10279640_SNP [dm3] 2L_10279640_SNP [dm6]	T	C	3.411e^-4	0.902	SYNONYMOUS_CODING CG34043 UPSTREAM Utx
2L	1985413	2L_1985413_SNP [dm3] 2L_1985413_SNP [dm6]	A	G	3.412e^-4	0.902	DOWNSTREAM CG7289 INTRON Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18034795	2R_18034795_SNP [dm3] 2R_22147290_SNP [dm6]	A	G	3.433e^-4	0.902	INTRON a	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	5051784	2R_5051784_SNP [dm3] 2R_9164279_SNP [dm6]	A	C	3.443e^-4	0.902	SPLICE_SITE_REGION CG8046 INTRON CG8046	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15118970	2R_15118970_SNP [dm3] 2R_19231465_SNP [dm6]	T	G	3.444e^-4	0.902	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	1980962	2L_1980962_SNP [dm3] 2L_1980962_SNP [dm6]	A	G	3.445e^-4	0.902	UPSTREAM CG15362 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	1981630	2L_1981630_SNP [dm3] 2L_1981630_SNP [dm6]	C	T	3.445e^-4	0.902	UPSTREAM CG15356 & 1 other INTRON CG15362	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
3L	7429285	3L_7429285_SNP [dm3] 3L_7436185_SNP [dm6]	C	T	3.446e^-4	0.902	UPSTREAM Rac2 DOWNSTREAM CG14835 INTRON CG42458	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	16887808	2R_16887808_SNP [dm3] 2R_21000303_SNP [dm6]	C	A	3.449e^-4	0.902	UPSTREAM CG10543 INTRON CG10543	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	2313212	3L_2313212_SNP [dm3] 3L_2313212_SNP [dm6]	A	G	3.466e^-4	0.902	INTERGENIC
3R	26642825	3R_26642825_SNP [dm3] 3R_30817103_SNP [dm6]	T	A	3.467e^-4	0.902	NON_SYNONYMOUS_CODING cindr UPSTREAM cindr	TF binding site mE1_TFBS_cad
2L	1982107	2L_1982107_SNP [dm3] 2L_1982107_SNP [dm6]	G	A	3.479e^-4	0.902	UPSTREAM CG7289 DOWNSTREAM CG15362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	9357731	2R_9357731_SNP [dm3] 2R_13470226_SNP [dm6]	C	G	3.480e^-4	0.902	INTRON arr
2L	19370775	2L_19370775_SNP [dm3] 2L_19370775_SNP [dm6]	T	A	3.482e^-4	0.902	INTRON CG17349
X	8759079	X_8759079_SNP [dm3] X_8865046_SNP [dm6]	T	A	3.489e^-4	0.902	INTRON CG12075
3L	16661651	3L_16661651_SNP [dm3] 3L_16668551_SNP [dm6]	T	C	3.499e^-4	0.902	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	6105893	3L_6105893_SNP [dm3] 3L_6112793_SNP [dm6]	G	T	3.505e^-4	0.902	INTRON Ets65A
2L	7117240	2L_7117240_SNP [dm3] 2L_7117240_SNP [dm6]	T	C	3.507e^-4	0.902	INTRON Pvf3
2L	8642330	2L_8642330_SNP [dm3] 2L_8642330_SNP [dm6]	A	G	3.507e^-4	0.902	INTRON Sema-1a
2L	8642438	2L_8642438_SNP [dm3] 2L_8642438_SNP [dm6]	T	G	3.507e^-4	0.902	INTRON Sema-1a
2L	8642442	2L_8642442_SNP [dm3] 2L_8642442_SNP [dm6]	G	A	3.507e^-4	0.902	INTRON Sema-1a
2L	8642484	2L_8642484_SNP [dm3] 2L_8642484_SNP [dm6]	G	C	3.507e^-4	0.902	INTRON Sema-1a
2L	13256924	2L_13256924_SNP [dm3] 2L_13256924_SNP [dm6]	G	A	3.511e^-4	0.902	SYNONYMOUS_CODING CG31728 UPSTREAM CG31851	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	527054	2L_527054_SNP [dm3] 2L_527054_SNP [dm6]	G	T	3.515e^-4	0.902	INTRON ush	regulatory region REDfly_CRMs
2L	527058	2L_527058_SNP [dm3] 2L_527058_SNP [dm6]	G	C	3.515e^-4	0.902	INTRON ush	regulatory region REDfly_CRMs
3L	2595519	3L_2595519_SNP [dm3] 3L_2595519_SNP [dm6]	A	T	3.528e^-4	0.902	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182
2L	8642360	2L_8642360_SNP [dm3] 2L_8642360_SNP [dm6]	T	A	3.535e^-4	0.902	INTRON Sema-1a
2L	8642377	2L_8642377_SNP [dm3] 2L_8642377_SNP [dm6]	A	T	3.535e^-4	0.902	INTRON Sema-1a
X	19448825	X_19448825_INS [dm3] X_19554792_INS [dm6]	A	AC	3.538e^-4	0.902	INTERGENIC
3L	1096457	3L_1096457_SNP [dm3] 3L_1096457_SNP [dm6]	A	G	3.538e^-4	0.902	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	14182687	2L_14182687_SNP [dm3] 2L_14182687_SNP [dm6]	T	C	3.551e^-4	0.902	INTERGENIC
2L	1758366	2L_1758366_SNP [dm3] 2L_1758366_SNP [dm6]	C	T	3.555e^-4	0.902	UTR_3_PRIME CG17650	regulatory region REDfly_CRMs
2L	6904352	2L_6904352_SNP [dm3] 2L_6904352_SNP [dm6]	C	T	3.556e^-4	0.902	SYNONYMOUS_CODING Nlg2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	3628130	2L_3628130_SNP [dm3] 2L_3628130_SNP [dm6]	C	T	3.557e^-4	0.902	INTRON for
2R	1781602	2R_1781602_SNP [dm3] 2R_5894097_SNP [dm6]	T	G	3.566e^-4	0.902	UTR_5_PRIME CG43366	TF binding site mE1_TFBS_Trl
2L	4091318	2L_4091318_SNP [dm3] 2L_4091318_SNP [dm6]	G	A	3.589e^-4	0.902	INTRON ed
2L	4091371	2L_4091371_SNP [dm3] 2L_4091371_SNP [dm6]	T	C	3.589e^-4	0.902	INTRON ed
2R	19647610	2R_19647610_SNP [dm3] 2R_23760087_SNP [dm6]	T	G	3.590e^-4	0.902	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	8687793	2R_8687793_SNP [dm3] 2R_12800288_SNP [dm6]	A	C	3.593e^-4	0.902	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19183636	2R_19183636_SNP [dm3] 2R_23296113_SNP [dm6]	C	A	3.608e^-4	0.902	INTERGENIC
2L	13255996	2L_13255996_SNP [dm3] 2L_13255996_SNP [dm6]	C	G	3.610e^-4	0.902	NON_SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7199918	2L_7199918_SNP [dm3] 2L_7199918_SNP [dm6]	C	G	3.615e^-4	0.902	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
3L	17218203	3L_17218203_SNP [dm3] 3L_17225103_SNP [dm6]	G	A	3.633e^-4	0.902	INTRON Rbp6
2L	10591161	2L_10591161_SNP [dm3] 2L_10591161_SNP [dm6]	T	A	3.652e^-4	0.902	INTRON Trim9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	6293666	3L_6293666_SNP [dm3] 3L_6300566_SNP [dm6]	T	G	3.673e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12674003	2R_12674003_SNP [dm3] 2R_16786498_SNP [dm6]	A	C	3.679e^-4	0.902	UPSTREAM CG5522 INTRON CG5522	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	11934832	3L_11934832_DEL [dm3] 3L_11941732_DEL [dm6]	TA	T	3.685e^-4	0.902	UPSTREAM Rpt4R INTERGENIC
3R	5686530	3R_5686530_INS [dm3] 3R_9860808_INS [dm6]	T	TACTTGTTT	3.690e^-4	0.902	INTRON Teh1
2R	9202380	2R_9202380_SNP [dm3] 2R_13314875_SNP [dm6]	A	T	3.694e^-4	0.902	INTERGENIC
2R	9202442	2R_9202442_SNP [dm3] 2R_13314937_SNP [dm6]	T	C	3.694e^-4	0.902	INTERGENIC
X	17220797	X_17220797_SNP [dm3] X_17326764_SNP [dm6]	T	C	3.701e^-4	0.902	INTERGENIC
2R	15310115	2R_15310115_SNP [dm3] 2R_19422610_SNP [dm6]	C	A	3.704e^-4	0.902	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	19449480	X_19449480_SNP [dm3] X_19555447_SNP [dm6]	C	T	3.709e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
2L	1132467	2L_1132467_SNP [dm3] 2L_1132467_SNP [dm6]	T	A	3.727e^-4	0.902	UTR_3_PRIME Iris DOWNSTREAM CG4552
2L	2508005	2L_2508005_SNP [dm3] 2L_2508005_SNP [dm6]	G	C	3.731e^-4	0.902	UPSTREAM CR44607 INTERGENIC
2R	18324907	2R_18324907_SNP [dm3] 2R_22437402_SNP [dm6]	T	C	3.741e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17457206	3L_17457206_SNP [dm3] 3L_17464106_SNP [dm6]	G	C	3.755e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	12988238	3R_12988238_SNP [dm3] 3R_17162516_SNP [dm6]	C	T	3.768e^-4	0.902	INTRON Mur89F
3R	16953524	3R_16953524_SNP [dm3] 3R_21127802_SNP [dm6]	C	T	3.774e^-4	0.902	UTR_5_PRIME CG5793 UPSTREAM CG5793 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	14997915	2R_14997915_SNP [dm3] 2R_19110410_SNP [dm6]	T	C	3.782e^-4	0.902	INTRON 5-HT1A
2R	1739164	2R_1739164_SNP [dm3] 2R_5851659_SNP [dm6]	C	T	3.782e^-4	0.902	INTRON dpr12
3L	11161190	3L_11161190_SNP [dm3] 3L_11168090_SNP [dm6]	A	G	3.782e^-4	0.902	INTRON wls	TF binding site BDTNP1_TFBS_twi
2L	9574960	2L_9574960_SNP [dm3] 2L_9574960_SNP [dm6]	G	A	3.793e^-4	0.902	SYNONYMOUS_CODING Mtpalpha	TF binding site mE1_TFBS_sens
3R	20400958	3R_20400958_SNP [dm3] 3R_24575236_SNP [dm6]	T	G	3.794e^-4	0.902	INTRON CG13624
2R	15300289	2R_15300289_SNP [dm3] 2R_19412784_SNP [dm6]	A	C	3.797e^-4	0.902	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	16814989	3L_16814989_SNP [dm3] 3L_16821889_SNP [dm6]	G	A	3.806e^-4	0.902	INTRON CG13024
3R	15188707	3R_15188707_SNP [dm3] 3R_19362985_SNP [dm6]	T	A	3.824e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
2R	18295460	2R_18295460_DEL [dm3] 2R_22407955_DEL [dm6]	TT	T	3.828e^-4	0.902	UTR_3_PRIME CG6044 UPSTREAM ventrally-expressed-protein-D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11577717	2L_11577717_SNP [dm3] 2L_11577717_SNP [dm6]	A	T	3.839e^-4	0.902	INTERGENIC
3R	15576742	3R_15576742_SNP [dm3] 3R_19751020_SNP [dm6]	A	G	3.839e^-4	0.902	INTRON GluClalpha
2L	10318534	2L_10318534_SNP [dm3] 2L_10318534_SNP [dm6]	A	G	3.843e^-4	0.902	SYNONYMOUS_CODING CG5381 DOWNSTREAM CG4972	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	6105802	3L_6105802_SNP [dm3] 3L_6112702_SNP [dm6]	G	C	3.844e^-4	0.902	INTRON Ets65A
X	15486775	X_15486775_SNP [dm3] X_15592742_SNP [dm6]	G	T	3.847e^-4	0.902	INTRON CG9220	TF binding site BDTNP1_TFBS_dl
3L	10647190	3L_10647190_SNP [dm3] 3L_10654090_SNP [dm6]	G	A	3.850e^-4	0.902	INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2L	1758359	2L_1758359_SNP [dm3] 2L_1758359_SNP [dm6]	G	A	3.851e^-4	0.902	UTR_3_PRIME CG17650	regulatory region REDfly_CRMs
3L	12291041	3L_12291041_SNP [dm3] 3L_12297941_SNP [dm6]	T	C	3.857e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14981352	2L_14981352_SNP [dm3] 2L_14981352_SNP [dm6]	T	C	3.857e^-4	0.902	INTRON mol
3R	21391464	3R_21391464_SNP [dm3] 3R_25565742_SNP [dm6]	A	G	3.873e^-4	0.902	INTRON msi
X	19906039	X_19906039_SNP [dm3] X_20012006_SNP [dm6]	C	T	3.874e^-4	0.902	INTRON Dop2R
3L	13908087	3L_13908087_SNP [dm3] 3L_13914987_SNP [dm6]	G	A	3.891e^-4	0.902	INTRON Rgl
2L	13316755	2L_13316755_SNP [dm3] 2L_13316755_SNP [dm6]	T	A	3.906e^-4	0.902	INTRON CG43778
3R	7434773	3R_7434773_SNP [dm3] 3R_11609051_SNP [dm6]	T	C	3.910e^-4	0.902	INTRON Jupiter
2R	15385398	2R_15385398_SNP [dm3] 2R_19497893_SNP [dm6]	C	G	3.929e^-4	0.902	NON_SYNONYMOUS_CODING CG15120	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12256519	3L_12256519_SNP [dm3] 3L_12263419_SNP [dm6]	T	C	3.946e^-4	0.902	INTRON app
2L	1990910	2L_1990910_SNP [dm3] 2L_1990910_SNP [dm6]	A	T	3.951e^-4	0.902	DOWNSTREAM Obp22a & 1 other INTERGENIC
2L	1990966	2L_1990966_SNP [dm3] 2L_1990966_SNP [dm6]	G	T	3.951e^-4	0.902	DOWNSTREAM Obp22a & 1 other INTERGENIC
X	15869412	X_15869412_SNP [dm3] X_15975379_SNP [dm6]	T	C	3.959e^-4	0.902	SYNONYMOUS_CODING Or13a
3R	1129497	3R_1129497_SNP [dm3] 3R_5303775_SNP [dm6]	C	A	3.960e^-4	0.902	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10698105	2R_10698105_SNP [dm3] 2R_14810600_SNP [dm6]	T	C	3.961e^-4	0.902	DOWNSTREAM hui INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16585596	2R_16585596_SNP [dm3] 2R_20698091_SNP [dm6]	A	T	3.963e^-4	0.902	UPSTREAM dpr INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	3505007	3R_3505007_SNP [dm3] 3R_7679285_SNP [dm6]	C	G	3.965e^-4	0.902	INTRON Nlg1
3R	8575903	3R_8575903_SNP [dm3] 3R_12750181_SNP [dm6]	A	G	3.977e^-4	0.902	INTRON beat-Vc
3R	8575935	3R_8575935_SNP [dm3] 3R_12750213_SNP [dm6]	A	T	3.977e^-4	0.902	INTRON beat-Vc
3R	4140694	3R_4140694_SNP [dm3] 3R_8314972_SNP [dm6]	A	T	3.980e^-4	0.902	UTR_3_PRIME Coq2 DOWNSTREAM eIF4AIII	TF binding site mE1_TFBS_inv
3L	2722466	3L_2722466_SNP [dm3] 3L_2722466_SNP [dm6]	G	A	3.986e^-4	0.902	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	9949487	X_9949487_SNP [dm3] X_10055454_SNP [dm6]	A	G	3.988e^-4	0.902	UTR_3_PRIME Yp1 UPSTREAM CR45601 DOWNSTREAM CG15312
3R	13093631	3R_13093631_SNP [dm3] 3R_17267909_SNP [dm6]	T	A	4.011e^-4	0.902	INTERGENIC
3R	23134913	3R_23134913_SNP [dm3] 3R_27309191_SNP [dm6]	C	T	4.012e^-4	0.902	INTRON CG3339
3R	18893095	3R_18893095_SNP [dm3] 3R_23067373_SNP [dm6]	C	A	4.013e^-4	0.902	UPSTREAM CG17111 INTERGENIC
2R	3091068	2R_3091068_SNP [dm3] 2R_7203563_SNP [dm6]	G	T	4.016e^-4	0.902	INTRON pk
3L	7285792	3L_7285792_SNP [dm3] 3L_7292692_SNP [dm6]	C	A	4.018e^-4	0.902	INTRON unc-13-4A
3L	2548025	3L_2548025_SNP [dm3] 3L_2548025_SNP [dm6]	T	G	4.036e^-4	0.902	INTRON Spn
3R	18181348	3R_18181348_SNP [dm3] 3R_22355626_SNP [dm6]	A	C	4.067e^-4	0.902	INTRON rdhB	TF binding site mE1_TFBS_cad
3L	11937971	3L_11937971_SNP [dm3] 3L_11944871_SNP [dm6]	C	T	4.069e^-4	0.902	UPSTREAM CG5883 INTERGENIC
3L	8841648	3L_8841648_SNP [dm3] 3L_8848548_SNP [dm6]	C	T	4.078e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA
2L	16886535	2L_16886535_SNP [dm3] 2L_16886535_SNP [dm6]	T	C	4.085e^-4	0.902	DOWNSTREAM CG6115 & 2 others INTERGENIC
2L	8657174	2L_8657174_SNP [dm3] 2L_8657174_SNP [dm6]	G	A	4.085e^-4	0.902	INTRON Sema-1a
2R	14082525	2R_14082525_SNP [dm3] 2R_18195020_SNP [dm6]	A	G	4.093e^-4	0.902	INTERGENIC
2L	11577728	2L_11577728_SNP [dm3] 2L_11577728_SNP [dm6]	A	T	4.095e^-4	0.902	INTERGENIC
3L	2376431	3L_2376431_SNP [dm3] 3L_2376431_SNP [dm6]	G	A	4.105e^-4	0.902	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3L	2376457	3L_2376457_SNP [dm3] 3L_2376457_SNP [dm6]	T	A	4.105e^-4	0.902	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3L	17247143	3L_17247143_DEL [dm3] 3L_17254043_DEL [dm6]	TAG	T	4.105e^-4	0.902	UPSTREAM CG6497 INTRON CR43870	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	16414689	2L_16414689_SNP [dm3] 2L_16414689_SNP [dm6]	A	G	4.116e^-4	0.902	INTRON CG5888	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	3349321	3L_3349321_SNP [dm3] 3L_3349321_SNP [dm6]	C	A	4.122e^-4	0.902	UPSTREAM kst INTRON kst	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12491407	2L_12491407_SNP [dm3] 2L_12491407_SNP [dm6]	T	C	4.122e^-4	0.902	INTRON bun
3R	11735212	3R_11735212_SNP [dm3] 3R_15909490_SNP [dm6]	G	T	4.123e^-4	0.902	SYNONYMOUS_CODING CG3303 DOWNSTREAM CG45105
3L	17269283	3L_17269283_SNP [dm3] 3L_17276183_SNP [dm6]	C	T	4.133e^-4	0.902	UPSTREAM CR45436 INTERGENIC
3L	14101758	3L_14101758_SNP [dm3] 3L_14108658_SNP [dm6]	C	A	4.137e^-4	0.902	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3495903	2L_3495903_SNP [dm3] 2L_3495903_SNP [dm6]	A	G	4.138e^-4	0.902	INTRON tim
2L	3495916	2L_3495916_DEL [dm3] 2L_3495916_DEL [dm6]	AAATGAATTGCTGGACTGT...	A	4.138e^-4	0.902	INTRON tim
2R	6141487	2R_6141487_SNP [dm3] 2R_10253982_SNP [dm6]	C	T	4.139e^-4	0.902	SYNONYMOUS_CODING CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	8837253	2L_8837253_SNP [dm3] 2L_8837253_SNP [dm6]	G	A	4.150e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	14770445	2L_14770445_SNP [dm3] 2L_14770445_SNP [dm6]	C	T	4.155e^-4	0.902	INTERGENIC
3R	1114352	3R_1114352_SNP [dm3] 3R_5288630_SNP [dm6]	T	G	4.160e^-4	0.902	INTRON mtd
2L	15465534	2L_15465534_DEL [dm3] 2L_15465534_DEL [dm6]	AA	A	4.160e^-4	0.902	INTERGENIC
2L	19905250	2L_19905250_SNP [dm3] 2L_19905250_SNP [dm6]	C	T	4.177e^-4	0.902	INTRON sick
2R	15390051	2R_15390051_SNP [dm3] 2R_19502546_SNP [dm6]	A	G	4.182e^-4	0.902	UPSTREAM CG11007 INTERGENIC
2L	3616345	2L_3616345_SNP [dm3] 2L_3616345_SNP [dm6]	A	G	4.187e^-4	0.902	EXON CR44310	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	6429109	X_6429109_SNP [dm3] X_6535076_SNP [dm6]	T	G	4.189e^-4	0.902	INTRON dx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1
2L	16414962	2L_16414962_SNP [dm3] 2L_16414962_SNP [dm6]	T	C	4.209e^-4	0.902	INTRON CG5888	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12136369	3R_12136369_SNP [dm3] 3R_16310647_SNP [dm6]	A	C	4.212e^-4	0.902	UTR_3_PRIME Sulf1
2L	526662	2L_526662_SNP [dm3] 2L_526662_SNP [dm6]	C	T	4.244e^-4	0.902	INTRON ush	regulatory region REDfly_CRMs
3L	2982788	3L_2982788_SNP [dm3] 3L_2982788_SNP [dm6]	A	G	4.245e^-4	0.902	SYNONYMOUS_CODING CG2107
3L	2680924	3L_2680924_SNP [dm3] 3L_2680924_SNP [dm6]	T	A	4.245e^-4	0.902	INTRON Fife
2L	13427294	2L_13427294_SNP [dm3] 2L_13427294_SNP [dm6]	C	T	4.248e^-4	0.902	INTRON CG42784
X	15215833	X_15215833_SNP [dm3] X_15321800_SNP [dm6]	A	C	4.265e^-4	0.902	INTRON Top1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13903800	2R_13903800_INS [dm3] 2R_18016295_INS [dm6]	T	TT	4.266e^-4	0.902	INTERGENIC
2R	12476945	2R_12476945_SNP [dm3] 2R_16589440_SNP [dm6]	A	T	4.267e^-4	0.902	UPSTREAM CG8311 DOWNSTREAM CG8306 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	10292511	3R_10292511_SNP [dm3] 3R_14466789_SNP [dm6]	C	A	4.270e^-4	0.902	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16242412	2R_16242412_SNP [dm3] 2R_20354907_SNP [dm6]	G	T	4.276e^-4	0.902	SYNONYMOUS_CODING CG11192	TF binding site mE1_TFBS_cad
2L	19941904	2L_19941904_SNP [dm3] 2L_19941904_SNP [dm6]	C	T	4.284e^-4	0.902	INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
X	7978714	X_7978714_SNP [dm3] X_8084681_SNP [dm6]	A	G	4.301e^-4	0.902	SYNONYMOUS_CODING CG2256 EXON CR45535	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19311562	2R_19311562_DEL [dm3] 2R_23424039_DEL [dm6]	GACCTGAA	TTT	4.304e^-4	0.902	INTRON CG9815
2R	5281939	2R_5281939_SNP [dm3] 2R_9394434_SNP [dm6]	C	T	4.308e^-4	0.902	SYNONYMOUS_CODING l_2_03659 DOWNSTREAM CG8800	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	12159080	3R_12159080_SNP [dm3] 3R_16333358_SNP [dm6]	C	A	4.315e^-4	0.902	INTRON Sulf1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10409425	2R_10409425_SNP [dm3] 2R_14521920_SNP [dm6]	T	G	4.318e^-4	0.902	INTERGENIC
2L	10858309	2L_10858309_SNP [dm3] 2L_10858309_SNP [dm6]	A	C	4.322e^-4	0.902	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
X	21325303	X_21325303_SNP [dm3] X_21454276_SNP [dm6]	A	T	4.327e^-4	0.902	INTRON CG42343
3L	12179891	3L_12179891_SNP [dm3] 3L_12186791_SNP [dm6]	C	A	4.335e^-4	0.902	SYNONYMOUS_CODING CG6910	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11926584	3L_11926584_SNP [dm3] 3L_11933484_SNP [dm6]	C	A	4.336e^-4	0.902	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	9715589	2L_9715589_SNP [dm3] 2L_9715589_SNP [dm6]	C	T	4.346e^-4	0.902	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	9667295	2R_9667295_SNP [dm3] 2R_13779790_SNP [dm6]	G	C	4.347e^-4	0.902	SYNONYMOUS_CODING S-Lap7 INTRON Cpr50Ca	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
2L	19866733	2L_19866733_SNP [dm3] 2L_19866733_SNP [dm6]	G	T	4.350e^-4	0.902	INTRON sick	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3L	11486883	3L_11486883_SNP [dm3] 3L_11493783_SNP [dm6]	C	T	4.354e^-4	0.902	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11945366	3R_11945366_SNP [dm3] 3R_16119644_SNP [dm6]	C	T	4.358e^-4	0.902	INTRON Sb
3L	11027229	3L_11027229_SNP [dm3] 3L_11034129_SNP [dm6]	C	T	4.361e^-4	0.902	UPSTREAM CR44547 INTERGENIC
2L	19679226	2L_19679226_INS [dm3] 2L_19679226_INS [dm6]	G	GAG	4.363e^-4	0.902	INTRON Lar
3L	11937476	3L_11937476_SNP [dm3] 3L_11944376_SNP [dm6]	C	T	4.375e^-4	0.902	SYNONYMOUS_CODING CG5883 DOWNSTREAM Rpt4R	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3861065	X_3861065_SNP [dm3] X_3967032_SNP [dm6]	T	C	4.380e^-4	0.902	SYNONYMOUS_CODING CG6428
2L	1982145	2L_1982145_SNP [dm3] 2L_1982145_SNP [dm6]	C	T	4.389e^-4	0.902	UPSTREAM CG7289 DOWNSTREAM CG15362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
X	3645633	X_3645633_SNP [dm3] X_3751600_SNP [dm6]	A	G	4.396e^-4	0.902	INTRON tlk
X	20773939	X_20773939_DEL [dm3] X_20902912_DEL [dm6]	TGCGT	T	4.407e^-4	0.902	INTRON shakB
3R	22822426	3R_22822426_SNP [dm3] 3R_26996704_SNP [dm6]	C	T	4.408e^-4	0.902	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
3L	11975472	3L_11975472_SNP [dm3] 3L_11982372_SNP [dm6]	C	T	4.417e^-4	0.902	SYNONYMOUS_CODING CG43896	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9990729	2L_9990729_SNP [dm3] 2L_9990729_SNP [dm6]	C	A	4.423e^-4	0.902	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11926510	3L_11926510_SNP [dm3] 3L_11933410_SNP [dm6]	T	G	4.427e^-4	0.902	INTRON CG44837 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	8075623	X_8075623_SNP [dm3] X_8181590_SNP [dm6]	A	G	4.436e^-4	0.902	INTRON sdt
X	8075624	X_8075624_SNP [dm3] X_8181591_SNP [dm6]	T	A	4.436e^-4	0.902	INTRON sdt
X	8075627	X_8075627_SNP [dm3] X_8181594_SNP [dm6]	A	T	4.436e^-4	0.902	INTRON sdt
X	4048831	X_4048831_SNP [dm3] X_4154798_SNP [dm6]	G	T	4.439e^-4	0.902	INTRON Fas2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	2805800	2L_2805800_SNP [dm3] 2L_2805800_SNP [dm6]	A	C	4.440e^-4	0.902	INTRON daw
2L	1982003	2L_1982003_SNP [dm3] 2L_1982003_SNP [dm6]	G	C	4.446e^-4	0.902	UTR_3_PRIME CG15362 UPSTREAM CG7289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2L	1457317	2L_1457317_SNP [dm3] 2L_1457317_SNP [dm6]	G	A	4.455e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11169226	2R_11169226_DEL [dm3] 2R_15281721_DEL [dm6]	AT	G	4.463e^-4	0.902	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	25132895	3R_25132895_INS [dm3] 3R_29307173_INS [dm6]	C	CTAA	4.467e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25132897	3R_25132897_DEL [dm3] 3R_29307175_DEL [dm6]	GA	G	4.467e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19050387	3R_19050387_SNP [dm3] 3R_23224665_SNP [dm6]	T	C	4.476e^-4	0.902	INTRON cnc
3R	19050403	3R_19050403_SNP [dm3] 3R_23224681_SNP [dm6]	T	A	4.476e^-4	0.902	INTRON cnc
3R	11212059	3R_11212059_SNP [dm3] 3R_15386337_SNP [dm6]	T	C	4.482e^-4	0.902	INTRON Rbp	TF binding site mE1_TFBS_cad
3R	12963589	3R_12963589_SNP [dm3] 3R_17137867_SNP [dm6]	A	C	4.484e^-4	0.902	UPSTREAM CG5255 DOWNSTREAM CG5246 INTERGENIC
2R	6729061	2R_6729061_SNP [dm3] 2R_10841556_SNP [dm6]	A	T	4.504e^-4	0.902	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
3L	12359180	3L_12359180_SNP [dm3] 3L_12366080_SNP [dm6]	C	A	4.506e^-4	0.902	INTERGENIC
3R	21655683	3R_21655683_SNP [dm3] 3R_25829961_SNP [dm6]	T	C	4.508e^-4	0.902	UPSTREAM Mst57Dc DOWNSTREAM Sfp96F & 1 other INTERGENIC
3R	2537762	3R_2537762_SNP [dm3] 3R_6712040_SNP [dm6]	T	A	4.508e^-4	0.902	INTRON pb	regulatory region REDfly_CRMs
3R	2580525	3R_2580525_SNP [dm3] 3R_6754803_SNP [dm6]	C	T	4.508e^-4	0.902	UPSTREAM zen INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3L	11927172	3L_11927172_SNP [dm3] 3L_11934072_SNP [dm6]	G	A	4.510e^-4	0.902	SYNONYMOUS_CODING byn INTRON CG44837	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8913808	X_8913808_SNP [dm3] X_9019775_SNP [dm6]	C	G	4.512e^-4	0.902	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	4.513e^-4	0.902	INTRON sick
X	15157386	X_15157386_SNP [dm3] X_15263353_SNP [dm6]	C	G	4.521e^-4	0.902	INTERGENIC
3R	14719948	3R_14719948_SNP [dm3] 3R_18894226_SNP [dm6]	A	T	4.529e^-4	0.902	INTERGENIC
X	15432727	X_15432727_SNP [dm3] X_15538694_SNP [dm6]	A	T	4.544e^-4	0.902	INTRON Ac13E
2R	10999900	2R_10999900_SNP [dm3] 2R_15112395_SNP [dm6]	A	G	4.545e^-4	0.902	INTERGENIC
3L	18067307	3L_18067307_SNP [dm3] 3L_18074207_SNP [dm6]	G	T	4.552e^-4	0.902	UPSTREAM CG44004 DOWNSTREAM CR45391 INTERGENIC
3R	21284157	3R_21284157_SNP [dm3] 3R_25458435_SNP [dm6]	C	T	4.562e^-4	0.902	INTRON Fur1
3L	2626464	3L_2626464_SNP [dm3] 3L_2626464_SNP [dm6]	C	A	4.575e^-4	0.902	INTRON Pxn
X	17357392	X_17357392_SNP [dm3] X_17463359_SNP [dm6]	G	T	4.581e^-4	0.902	INTRON CG43658
3R	13659391	3R_13659391_SNP [dm3] 3R_17833669_SNP [dm6]	A	T	4.595e^-4	0.902	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2L	11576601	2L_11576601_SNP [dm3] 2L_11576601_SNP [dm6]	G	A	4.600e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11169270	2R_11169270_SNP [dm3] 2R_15281765_SNP [dm6]	C	T	4.605e^-4	0.902	INTRON Trpm	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	19347062	2R_19347062_SNP [dm3] 2R_23459539_SNP [dm6]	G	T	4.610e^-4	0.902	UPSTREAM skpF INTRON CG43795
2L	1981534	2L_1981534_SNP [dm3] 2L_1981534_SNP [dm6]	G	A	4.611e^-4	0.902	SYNONYMOUS_CODING CG15362 UPSTREAM CG15356 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_ttk
2L	8642385	2L_8642385_SNP [dm3] 2L_8642385_SNP [dm6]	A	T	4.612e^-4	0.902	INTRON Sema-1a
X	10003755	X_10003755_SNP [dm3] X_10109722_SNP [dm6]	T	C	4.614e^-4	0.902	INTRON RhoU
2L	15826102	2L_15826102_SNP [dm3] 2L_15826102_SNP [dm6]	G	T	4.621e^-4	0.902	INTERGENIC
3R	5697627	3R_5697627_SNP [dm3] 3R_9871905_SNP [dm6]	A	C	4.622e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	8575841	3R_8575841_SNP [dm3] 3R_12750119_SNP [dm6]	T	G	4.624e^-4	0.902	INTRON beat-Vc
3L	10363811	3L_10363811_DEL [dm3] 3L_10370711_DEL [dm6]	TT	G	4.645e^-4	0.902	INTERGENIC
3L	2710143	3L_2710143_SNP [dm3] 3L_2710143_SNP [dm6]	T	G	4.645e^-4	0.902	INTRON Fife
2L	5421259	2L_5421259_SNP [dm3] 2L_5421259_SNP [dm6]	C	G	4.648e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2R	5051521	2R_5051521_SNP [dm3] 2R_9164016_SNP [dm6]	G	T	4.669e^-4	0.902	SYNONYMOUS_CODING CG8046	TF binding site mE1_TFBS_sens
2R	20208787	2R_20208787_SNP [dm3] 2R_24321264_SNP [dm6]	G	A	4.679e^-4	0.902	INTERGENIC
2L	3058059	2L_3058059_SNP [dm3] 2L_3058059_SNP [dm6]	C	G	4.687e^-4	0.902	INTRON CG3523
3L	7611995	3L_7611995_SNP [dm3] 3L_7618895_SNP [dm6]	G	A	4.689e^-4	0.902	INTRON CG33275
3L	17487746	3L_17487746_SNP [dm3] 3L_17494646_SNP [dm6]	T	A	4.692e^-4	0.902	UPSTREAM edin INTRON Oatp74D	TF binding site mE1_TFBS_cad
3L	17487773	3L_17487773_SNP [dm3] 3L_17494673_SNP [dm6]	T	C	4.692e^-4	0.902	UPSTREAM edin INTRON Oatp74D	TF binding site mE1_TFBS_cad
2L	13255968	2L_13255968_SNP [dm3] 2L_13255968_SNP [dm6]	C	T	4.696e^-4	0.902	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7087611	3L_7087611_SNP [dm3] 3L_7094511_SNP [dm6]	G	A	4.704e^-4	0.902	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	7087635	3L_7087635_SNP [dm3] 3L_7094535_SNP [dm6]	A	C	4.704e^-4	0.902	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC	insulator Insulator_Class_I.mE01
3L	7087772	3L_7087772_SNP [dm3] 3L_7094672_SNP [dm6]	A	G	4.704e^-4	0.902	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
3L	6293685	3L_6293685_SNP [dm3] 3L_6300585_SNP [dm6]	A	G	4.714e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6293687	3L_6293687_SNP [dm3] 3L_6300587_SNP [dm6]	G	T	4.714e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9007388	3L_9007388_SNP [dm3] 3L_9014288_SNP [dm6]	G	A	4.716e^-4	0.902	INTRON Doc2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10944347	3L_10944347_SNP [dm3] 3L_10951247_SNP [dm6]	A	T	4.723e^-4	0.902	INTERGENIC
2L	8654349	2L_8654349_SNP [dm3] 2L_8654349_SNP [dm6]	G	A	4.731e^-4	0.902	INTRON Sema-1a
2R	20165037	2R_20165037_SNP [dm3] 2R_24277514_SNP [dm6]	C	T	4.738e^-4	0.902	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19547208	3R_19547208_SNP [dm3] 3R_23721486_SNP [dm6]	A	G	4.738e^-4	0.902	UTR_5_PRIME CG10232	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	18986542	2R_18986542_SNP [dm3] 2R_23099019_SNP [dm6]	G	A	4.740e^-4	0.902	INTERGENIC
2L	6980550	2L_6980550_SNP [dm3] 2L_6980550_SNP [dm6]	T	A	4.742e^-4	0.902	SYNONYMOUS_CODING uif	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7222288	2R_7222288_SNP [dm3] 2R_11334783_SNP [dm6]	G	A	4.749e^-4	0.902	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	1366506	2R_1366506_SNP [dm3] 2R_5479001_SNP [dm6]	C	A	4.758e^-4	0.902	INTRON CG30440	transposable element FlyBase
2L	19700881	2L_19700881_SNP [dm3] 2L_19700881_SNP [dm6]	T	A	4.763e^-4	0.902	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4082959	3R_4082959_SNP [dm3] 3R_8257237_SNP [dm6]	C	G	4.775e^-4	0.902	INTRON mtg
3R	23535175	3R_23535175_SNP [dm3] 3R_27709453_SNP [dm6]	A	G	4.788e^-4	0.902	INTRON CG12877	TF binding site mE1_TFBS_cad
2R	7563390	2R_7563390_SNP [dm3] 2R_11675885_SNP [dm6]	C	T	4.794e^-4	0.902	UPSTREAM Tret1-2 INTRON Roc2
2R	15712134	2R_15712134_SNP [dm3] 2R_19824629_SNP [dm6]	G	A	4.799e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Trl
2L	19839998	2L_19839998_SNP [dm3] 2L_19839998_SNP [dm6]	A	T	4.800e^-4	0.902	INTRON sick
3L	4049805	3L_4049805_DEL [dm3] 3L_4049805_DEL [dm6]	CC	C	4.816e^-4	0.902	INTRON CG1136	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3R	22958993	3R_22958993_SNP [dm3] 3R_27133271_SNP [dm6]	A	T	4.820e^-4	0.902	INTRON CG6051
2L	1034382	2L_1034382_SNP [dm3] 2L_1034382_SNP [dm6]	G	T	4.825e^-4	0.902	INTRON IA-2
3L	3641972	3L_3641972_INS [dm3] 3L_3641972_INS [dm6]	A	AGTTGCA	4.835e^-4	0.902	INTRON dar1
3R	24611501	3R_24611501_INS [dm3] 3R_28785779_INS [dm6]	T	TGTC	4.835e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	19801207	2L_19801207_SNP [dm3] 2L_19801207_SNP [dm6]	G	A	4.838e^-4	0.902	INTRON sick
X	15125585	X_15125585_SNP [dm3] X_15231552_SNP [dm6]	G	A	4.851e^-4	0.902	INTERGENIC
2L	14998927	2L_14998927_SNP [dm3] 2L_14998927_SNP [dm6]	T	A	4.852e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	4354667	3R_4354667_SNP [dm3] 3R_8528945_SNP [dm6]	A	G	4.881e^-4	0.902	UPSTREAM CG11741 INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2R	10999874	2R_10999874_SNP [dm3] 2R_15112369_SNP [dm6]	T	G	4.885e^-4	0.902	INTERGENIC
2R	11000042	2R_11000042_SNP [dm3] 2R_15112537_SNP [dm6]	C	T	4.885e^-4	0.902	INTERGENIC
2R	16241021	2R_16241021_SNP [dm3] 2R_20353516_SNP [dm6]	T	A	4.887e^-4	0.902	DOWNSTREAM CG11192 INTERGENIC
X	12439875	X_12439875_SNP [dm3] X_12545842_SNP [dm6]	C	A	4.888e^-4	0.902	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	17398813	3R_17398813_SNP [dm3] 3R_21573091_SNP [dm6]	A	C	4.891e^-4	0.902	UTR_3_PRIME InR
3L	4568997	3L_4568997_SNP [dm3] 3L_4568997_SNP [dm6]	C	G	4.904e^-4	0.902	INTRON CG42540
2L	15209075	2L_15209075_SNP [dm3] 2L_15209075_SNP [dm6]	T	G	4.906e^-4	0.902	DOWNSTREAM CR44196 INTERGENIC
3L	17282661	3L_17282661_SNP [dm3] 3L_17289561_SNP [dm6]	G	C	4.909e^-4	0.902	INTERGENIC
3L	12240374	3L_12240374_SNP [dm3] 3L_12247274_SNP [dm6]	T	C	4.923e^-4	0.902	INTRON app
2R	19178600	2R_19178600_SNP [dm3] 2R_23291077_SNP [dm6]	C	T	4.925e^-4	0.902	EXON CR44783
3L	12240752	3L_12240752_SNP [dm3] 3L_12247652_SNP [dm6]	C	T	4.926e^-4	0.902	INTRON app
3L	9516272	3L_9516272_SNP [dm3] 3L_9523172_SNP [dm6]	G	C	4.928e^-4	0.902	INTRON CG33700
2L	13256793	2L_13256793_SNP [dm3] 2L_13256793_SNP [dm6]	T	G	4.941e^-4	0.902	UPSTREAM CG31851 INTRON CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8610793	2R_8610793_SNP [dm3] 2R_12723288_SNP [dm6]	A	T	4.943e^-4	0.902	INTRON CG42663
2L	19798779	2L_19798779_SNP [dm3] 2L_19798779_SNP [dm6]	C	A	4.959e^-4	0.902	INTRON sick
3L	11631056	3L_11631056_SNP [dm3] 3L_11637956_SNP [dm6]	C	T	4.971e^-4	0.902	INTRON CG32091
3L	11631066	3L_11631066_SNP [dm3] 3L_11637966_SNP [dm6]	G	A	4.971e^-4	0.902	INTRON CG32091
3R	13202470	3R_13202470_SNP [dm3] 3R_17376748_SNP [dm6]	T	C	4.975e^-4	0.902	SYNONYMOUS_CODING Brf
3L	2724075	3L_2724075_SNP [dm3] 3L_2724075_SNP [dm6]	A	G	4.979e^-4	0.902	INTRON Mrtf
3L	3030985	3L_3030985_SNP [dm3] 3L_3030985_SNP [dm6]	G	A	4.980e^-4	0.902	INTERGENIC
X	14230641	X_14230641_SNP [dm3] X_14336608_SNP [dm6]	T	A	4.982e^-4	0.902	INTRON dpr8
2R	19177816	2R_19177816_SNP [dm3] 2R_23290293_SNP [dm6]	T	A	4.984e^-4	0.902	DOWNSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	968252	3L_968252_SNP [dm3] 3L_968252_SNP [dm6]	A	G	4.990e^-4	0.902	INTRON Glut1
2R	13723815	2R_13723815_SNP [dm3] 2R_17836310_SNP [dm6]	C	T	4.999e^-4	0.902	INTRON grh	TF binding site mE1_TFBS_cad
2L	14595927	2L_14595927_SNP [dm3] 2L_14595927_SNP [dm6]	T	A	5.000e^-4	0.902	INTERGENIC
2R	11158116	2R_11158116_SNP [dm3] 2R_15270611_SNP [dm6]	T	C	5.002e^-4	0.902	INTRON Trpm
X	8759081	X_8759081_SNP [dm3] X_8865048_SNP [dm6]	T	A	5.002e^-4	0.902	INTRON CG12075
3R	13911410	3R_13911410_SNP [dm3] 3R_18085688_SNP [dm6]	A	G	5.005e^-4	0.902	INTERGENIC
3R	13659388	3R_13659388_SNP [dm3] 3R_17833666_SNP [dm6]	C	T	5.005e^-4	0.902	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	5.019e^-4	0.902	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	16558879	3R_16558879_SNP [dm3] 3R_20733157_SNP [dm6]	T	C	5.036e^-4	0.902	DOWNSTREAM CG31205 INTERGENIC
2L	13255977	2L_13255977_SNP [dm3] 2L_13255977_SNP [dm6]	C	T	5.039e^-4	0.902	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	7025719	2L_7025719_SNP [dm3] 2L_7025719_SNP [dm6]	G	T	5.045e^-4	0.902	SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
3R	13828733	3R_13828733_SNP [dm3] 3R_18003011_SNP [dm6]	A	T	5.045e^-4	0.902	INTRON cpo
2L	2597067	2L_2597067_SNP [dm3] 2L_2597067_SNP [dm6]	T	G	5.048e^-4	0.902	INTERGENIC
3L	8437847	3L_8437847_SNP [dm3] 3L_8444747_SNP [dm6]	A	G	5.054e^-4	0.902	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8437848	3L_8437848_SNP [dm3] 3L_8444748_SNP [dm6]	C	T	5.054e^-4	0.902	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21860946	3R_21860946_SNP [dm3] 3R_26035224_SNP [dm6]	A	G	5.062e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16875569	2L_16875569_SNP [dm3] 2L_16875569_SNP [dm6]	T	G	5.062e^-4	0.902	INTRON CR31781
X	6640123	X_6640123_SNP [dm3] X_6746090_SNP [dm6]	G	A	5.068e^-4	0.902	DOWNSTREAM CR44964 EXON CR44895
X	6640462	X_6640462_SNP [dm3] X_6746429_SNP [dm6]	A	G	5.068e^-4	0.902	DOWNSTREAM CR44895 EXON CR44964	TF binding site mE1_TFBS_HSA
3L	2712594	3L_2712594_SNP [dm3] 3L_2712594_SNP [dm6]	T	G	5.073e^-4	0.902	UPSTREAM Fife INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	1277439	2L_1277439_SNP [dm3] 2L_1277439_SNP [dm6]	A	G	5.083e^-4	0.902	INTRON robo3
2R	14185489	2R_14185489_SNP [dm3] 2R_18297984_SNP [dm6]	G	T	5.088e^-4	0.902	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
2R	13893471	2R_13893471_SNP [dm3] 2R_18005966_SNP [dm6]	G	A	5.093e^-4	0.902	INTRON dpr13 EXON CR44419
3L	10211837	3L_10211837_SNP [dm3] 3L_10218737_SNP [dm6]	G	C	5.099e^-4	0.902	NON_SYNONYMOUS_CODING CG32055
3L	3010405	3L_3010405_SNP [dm3] 3L_3010405_SNP [dm6]	C	T	5.100e^-4	0.902	UTR_3_PRIME FMRFaR
3L	2376621	3L_2376621_SNP [dm3] 3L_2376621_SNP [dm6]	C	T	5.102e^-4	0.902	NON_SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
2L	1034396	2L_1034396_SNP [dm3] 2L_1034396_SNP [dm6]	A	T	5.116e^-4	0.902	INTRON IA-2
2R	7563719	2R_7563719_SNP [dm3] 2R_11676214_SNP [dm6]	T	C	5.122e^-4	0.902	SPLICE_SITE_REGION Tret1-2 SYNONYMOUS_CODING Tret1-2 INTRON Roc2	TF binding site mE1_TFBS_cad
X	4290283	X_4290283_SNP [dm3] X_4396250_SNP [dm6]	C	A	5.124e^-4	0.902	INTRON CR32773	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8423893	2L_8423893_SNP [dm3] 2L_8423893_SNP [dm6]	G	C	5.134e^-4	0.902	INTRON Akap200	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
3L	2425534	3L_2425534_SNP [dm3] 3L_2425534_SNP [dm6]	C	T	5.144e^-4	0.902	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	2768663	2R_2768663_SNP [dm3] 2R_6881158_SNP [dm6]	A	G	5.150e^-4	0.902	UPSTREAM Spn42Dc & 1 other INTRON Spn42Dc	TF binding site mE1_TFBS_Trl
2L	2597211	2L_2597211_SNP [dm3] 2L_2597211_SNP [dm6]	A	C	5.166e^-4	0.902	INTERGENIC
3L	12240247	3L_12240247_SNP [dm3] 3L_12247147_SNP [dm6]	C	T	5.180e^-4	0.902	INTRON app
2R	8714385	2R_8714385_SNP [dm3] 2R_12826880_SNP [dm6]	A	T	5.188e^-4	0.902	INTERGENIC
3R	18531804	3R_18531804_SNP [dm3] 3R_22706082_SNP [dm6]	G	C	5.195e^-4	0.902	SYNONYMOUS_CODING CG13842
2L	19370721	2L_19370721_SNP [dm3] 2L_19370721_SNP [dm6]	G	A	5.197e^-4	0.902	SYNONYMOUS_CODING CG17349
X	6093074	X_6093074_SNP [dm3] X_6199041_SNP [dm6]	C	A	5.202e^-4	0.902	UPSTREAM CG32751 DOWNSTREAM CG43090 INTERGENIC
2L	5129062	2L_5129062_SNP [dm3] 2L_5129062_SNP [dm6]	C	T	5.218e^-4	0.902	SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	16375960	X_16375960_SNP [dm3] X_16481927_SNP [dm6]	G	A	5.225e^-4	0.902	INTRON para
2L	14424569	2L_14424569_SNP [dm3] 2L_14424569_SNP [dm6]	A	G	5.227e^-4	0.902	SYNONYMOUS_CODING Cpr35B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14062767	3L_14062767_SNP [dm3] 3L_14069667_SNP [dm6]	C	A	5.237e^-4	0.902	INTRON CG32138
2L	2596843	2L_2596843_DEL [dm3] 2L_2596843_DEL [dm6]	TT	C	5.243e^-4	0.902	INTERGENIC
2L	7115241	2L_7115241_SNP [dm3] 2L_7115241_SNP [dm6]	G	A	5.245e^-4	0.902	INTRON Pvf3
2L	6642666	2L_6642666_SNP [dm3] 2L_6642666_SNP [dm6]	A	G	5.248e^-4	0.902	INTRON CG31635
2R	19975579	2R_19975579_SNP [dm3] 2R_24088056_SNP [dm6]	T	G	5.268e^-4	0.902	INTRON snama
3R	21980283	3R_21980283_SNP [dm3] 3R_26154561_SNP [dm6]	C	T	5.278e^-4	0.902	INTERGENIC
2L	19872017	2L_19872017_SNP [dm3] 2L_19872017_SNP [dm6]	A	T	5.294e^-4	0.902	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_inv
3R	26699984	3R_26699984_SNP [dm3] 3R_30874262_SNP [dm6]	T	G	5.295e^-4	0.902	DOWNSTREAM CG15546 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9516013	3L_9516013_DEL [dm3] 3L_9522913_DEL [dm6]	GG	G	5.309e^-4	0.902	INTRON CG33700
3L	11926989	3L_11926989_SNP [dm3] 3L_11933889_SNP [dm6]	G	A	5.311e^-4	0.902	SYNONYMOUS_CODING byn INTRON CG44837
2L	13476301	2L_13476301_SNP [dm3] 2L_13476301_SNP [dm6]	C	A	5.314e^-4	0.902	SYNONYMOUS_CODING CG42784 INTRON CG42784	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	9248835	3R_9248835_SNP [dm3] 3R_13423113_SNP [dm6]	T	G	5.314e^-4	0.902	SYNONYMOUS_CODING Ir87a
3R	9256877	3R_9256877_SNP [dm3] 3R_13431155_SNP [dm6]	T	A	5.314e^-4	0.902	INTRON yrt
3L	8729211	3L_8729211_SNP [dm3] 3L_8736111_SNP [dm6]	C	G	5.316e^-4	0.902	DOWNSTREAM Prm INTRON Prm	TF binding site mE1_TFBS_inv
3L	8841301	3L_8841301_SNP [dm3] 3L_8848201_SNP [dm6]	G	A	5.320e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11575016	2L_11575016_SNP [dm3] 2L_11575016_SNP [dm6]	G	C	5.321e^-4	0.902	INTERGENIC
3L	10944351	3L_10944351_INS [dm3] 3L_10951251_INS [dm6]	A	AGTCCATATATTGCA...	5.328e^-4	0.902	INTERGENIC
3L	8841392	3L_8841392_SNP [dm3] 3L_8848292_SNP [dm6]	A	T	5.334e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	5.341e^-4	0.902	UTR_3_PRIME CG10830
2R	10662899	2R_10662899_SNP [dm3] 2R_14775394_SNP [dm6]	G	A	5.348e^-4	0.902	SYNONYMOUS_CODING kn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	889998	2L_889998_SNP [dm3] 2L_889998_SNP [dm6]	C	G	5.359e^-4	0.902	INTERGENIC
2L	890014	2L_890014_SNP [dm3] 2L_890014_SNP [dm6]	T	C	5.359e^-4	0.902	INTERGENIC
2R	6141573	2R_6141573_SNP [dm3] 2R_10254068_SNP [dm6]	C	A	5.386e^-4	0.902	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	7199181	2L_7199181_DEL [dm3] 2L_7199181_DEL [dm6]	CA	T	5.389e^-4	0.902	INTRON CG4502
X	20731972	X_20731972_SNP [dm3] X_20860945_SNP [dm6]	C	T	5.391e^-4	0.902	INTRON shakB
3R	15578845	3R_15578845_SNP [dm3] 3R_19753123_SNP [dm6]	C	T	5.394e^-4	0.902	INTRON GluClalpha
3R	15578864	3R_15578864_SNP [dm3] 3R_19753142_SNP [dm6]	C	G	5.394e^-4	0.902	INTRON GluClalpha
3L	2516025	3L_2516025_SNP [dm3] 3L_2516025_SNP [dm6]	A	C	5.395e^-4	0.902	INTRON Spn
3L	15931636	3L_15931636_SNP [dm3] 3L_15938536_SNP [dm6]	T	C	5.404e^-4	0.902	INTRON Pka-C3
2L	6831441	2L_6831441_SNP [dm3] 2L_6831441_SNP [dm6]	G	A	5.414e^-4	0.902	SYNONYMOUS_CODING sens-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	19700905	2L_19700905_SNP [dm3] 2L_19700905_SNP [dm6]	A	T	5.415e^-4	0.902	NON_SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14182749	2L_14182749_SNP [dm3] 2L_14182749_SNP [dm6]	A	C	5.424e^-4	0.902	INTERGENIC
3R	13305055	3R_13305055_SNP [dm3] 3R_17479333_SNP [dm6]	G	A	5.425e^-4	0.902	SYNONYMOUS_CODING Dscam3
2L	19699643	2L_19699643_SNP [dm3] 2L_19699643_SNP [dm6]	T	C	5.455e^-4	0.902	UTR_3_PRIME scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	8253885	2R_8253885_SNP [dm3] 2R_12366380_SNP [dm6]	C	T	5.463e^-4	0.902	UPSTREAM CG33012 INTRON CR33013
2R	8255460	2R_8255460_SNP [dm3] 2R_12367955_SNP [dm6]	C	T	5.463e^-4	0.902	SYNONYMOUS_CODING CG33012	TF binding site mE1_TFBS_HSA
3R	14514487	3R_14514487_SNP [dm3] 3R_18688765_SNP [dm6]	T	G	5.467e^-4	0.902	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	16823982	X_16823982_SNP [dm3] X_16929949_SNP [dm6]	A	T	5.488e^-4	0.902	INTRON CG4928
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	5.491e^-4	0.902	UPSTREAM CG31050 INTERGENIC
3R	24477187	3R_24477187_SNP [dm3] 3R_28651465_SNP [dm6]	A	T	5.491e^-4	0.902	UPSTREAM CG31050 INTERGENIC
3R	24477211	3R_24477211_SNP [dm3] 3R_28651489_SNP [dm6]	T	A	5.491e^-4	0.902	INTERGENIC
3R	24477212	3R_24477212_SNP [dm3] 3R_28651490_SNP [dm6]	C	T	5.491e^-4	0.902	INTERGENIC
2L	6978372	2L_6978372_SNP [dm3] 2L_6978372_SNP [dm6]	C	T	5.500e^-4	0.902	SYNONYMOUS_CODING uif	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19731444	2L_19731444_SNP [dm3] 2L_19731444_SNP [dm6]	G	A	5.502e^-4	0.902	UTR_3_PRIME Lar DOWNSTREAM CG10462
2L	12260322	2L_12260322_SNP [dm3] 2L_12260322_SNP [dm6]	T	C	5.503e^-4	0.902	INTRON aret
2L	1959612	2L_1959612_DEL [dm3] 2L_1959612_DEL [dm6]	GT	G	5.528e^-4	0.902	INTRON erm	TF binding site mE1_TFBS_chinmo
2L	1959630	2L_1959630_SNP [dm3] 2L_1959630_SNP [dm6]	T	C	5.528e^-4	0.902	INTRON erm	TF binding site mE1_TFBS_chinmo
3R	17398780	3R_17398780_DEL [dm3] 3R_21573058_DEL [dm6]	AAAAGGT	A	5.531e^-4	0.902	UTR_3_PRIME InR
2L	13261779	2L_13261779_SNP [dm3] 2L_13261779_SNP [dm6]	G	A	5.534e^-4	0.902	INTRON CG44085
3R	14809475	3R_14809475_SNP [dm3] 3R_18983753_SNP [dm6]	C	G	5.543e^-4	0.902	UPSTREAM gukh & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	7176100	3L_7176100_SNP [dm3] 3L_7183000_SNP [dm6]	A	G	5.544e^-4	0.902	INTRON Dscam2
3R	8946387	3R_8946387_SNP [dm3] 3R_13120665_SNP [dm6]	C	A	5.544e^-4	0.902	INTRON timeout
3R	8946395	3R_8946395_SNP [dm3] 3R_13120673_SNP [dm6]	C	A	5.544e^-4	0.902	INTRON timeout
3R	2586102	3R_2586102_SNP [dm3] 3R_6760380_SNP [dm6]	T	C	5.548e^-4	0.902	UPSTREAM bcd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
X	14425556	X_14425556_SNP [dm3] X_14531523_SNP [dm6]	T	A	5.548e^-4	0.902	INTERGENIC
3R	18713479	3R_18713479_SNP [dm3] 3R_22887757_SNP [dm6]	C	G	5.552e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13604500	X_13604500_SNP [dm3] X_13710467_SNP [dm6]	T	C	5.557e^-4	0.902	SYNONYMOUS_CODING NnaD INTRON CG9940 & 1 other
3L	12621960	3L_12621960_SNP [dm3] 3L_12628860_SNP [dm6]	A	T	5.562e^-4	0.902	INTRON CR32111
3R	26357189	3R_26357189_SNP [dm3] 3R_30531467_SNP [dm6]	G	A	5.572e^-4	0.902	INTRON CR45552 EXON CR45553
2L	9671702	2L_9671702_SNP [dm3] 2L_9671702_SNP [dm6]	T	A	5.587e^-4	0.902	UPSTREAM CR44150 INTERGENIC
3L	7277034	3L_7277034_SNP [dm3] 3L_7283934_SNP [dm6]	T	C	5.590e^-4	0.902	INTRON unc-13-4A
2R	1076607	2R_1076607_SNP [dm3] 2R_5189102_SNP [dm6]	T	G	5.596e^-4	0.902	INTRON Nipped-A	transposable element FlyBase
3L	14763742	3L_14763742_SNP [dm3] 3L_14770642_SNP [dm6]	G	A	5.606e^-4	0.902	INTRON mop
3L	2577345	3L_2577345_SNP [dm3] 3L_2577345_SNP [dm6]	G	T	5.606e^-4	0.902	INTRON msn	regulatory region REDfly_CRMs
2L	19370762	2L_19370762_SNP [dm3] 2L_19370762_SNP [dm6]	C	A	5.606e^-4	0.902	INTRON CG17349
2L	9264610	2L_9264610_SNP [dm3] 2L_9264610_SNP [dm6]	T	A	5.611e^-4	0.902	INTRON Ggamma30A
2L	11576516	2L_11576516_SNP [dm3] 2L_11576516_SNP [dm6]	C	G	5.628e^-4	0.902	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20001121	3R_20001121_SNP [dm3] 3R_24175399_SNP [dm6]	T	C	5.630e^-4	0.902	INTRON CG13606
3L	1435593	3L_1435593_SNP [dm3] 3L_1435593_SNP [dm6]	G	T	5.630e^-4	0.902	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	17354641	3R_17354641_SNP [dm3] 3R_21528919_SNP [dm6]	C	T	5.639e^-4	0.902	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	17279929	3L_17279929_SNP [dm3] 3L_17286829_SNP [dm6]	C	A	5.646e^-4	0.902	INTERGENIC
X	6640121	X_6640121_SNP [dm3] X_6746088_SNP [dm6]	T	C	5.657e^-4	0.902	DOWNSTREAM CR44964 EXON CR44895
3L	16814996	3L_16814996_SNP [dm3] 3L_16821896_SNP [dm6]	A	C	5.672e^-4	0.902	INTRON CG13024
3R	10319493	3R_10319493_SNP [dm3] 3R_14493771_SNP [dm6]	T	G	5.676e^-4	0.902	INTERGENIC
3L	14140369	3L_14140369_SNP [dm3] 3L_14147269_SNP [dm6]	T	G	5.681e^-4	0.902	INTERGENIC	regulatory region REDfly_CRMs
3R	15188702	3R_15188702_SNP [dm3] 3R_19362980_SNP [dm6]	A	C	5.682e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_disco mE1_TFBS_HSA
3L	17491972	3L_17491972_SNP [dm3] 3L_17498872_SNP [dm6]	A	G	5.683e^-4	0.902	INTRON Oatp74D
2R	16889569	2R_16889569_SNP [dm3] 2R_21002064_SNP [dm6]	A	G	5.689e^-4	0.902	SYNONYMOUS_CODING CG10543	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11079728	2R_11079728_SNP [dm3] 2R_15192223_SNP [dm6]	A	G	5.712e^-4	0.902	DOWNSTREAM Sfp51E INTERGENIC
3L	10211838	3L_10211838_SNP [dm3] 3L_10218738_SNP [dm6]	T	G	5.719e^-4	0.902	SYNONYMOUS_CODING CG32055
2L	7777665	2L_7777665_SNP [dm3] 2L_7777665_SNP [dm6]	A	G	5.720e^-4	0.902	SYNONYMOUS_CODING CG7179	TF binding site mE1_TFBS_cad
3R	23569696	3R_23569696_SNP [dm3] 3R_27743974_SNP [dm6]	A	T	5.725e^-4	0.902	NON_SYNONYMOUS_CODING Ets98B	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16916553	3L_16916553_SNP [dm3] 3L_16923453_SNP [dm6]	G	C	5.737e^-4	0.902	SYNONYMOUS_CODING CG13028 DOWNSTREAM Lmpt & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	6960278	2L_6960278_SNP [dm3] 2L_6960278_SNP [dm6]	C	T	5.746e^-4	0.902	UTR_5_PRIME Atac1 UPSTREAM CG10399	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16905357	3R_16905357_SNP [dm3] 3R_21079635_SNP [dm6]	G	T	5.746e^-4	0.902	INTRON HHEX
3R	13639515	3R_13639515_INS [dm3] 3R_17813793_INS [dm6]	T	TATGT	5.751e^-4	0.902	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	15119071	2R_15119071_SNP [dm3] 2R_19231566_SNP [dm6]	C	T	5.754e^-4	0.902	INTRON cora	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	14062770	3L_14062770_SNP [dm3] 3L_14069670_SNP [dm6]	T	A	5.782e^-4	0.902	INTRON CG32138
2L	19794717	2L_19794717_SNP [dm3] 2L_19794717_SNP [dm6]	C	T	5.798e^-4	0.902	SYNONYMOUS_CODING fs_2_ltoPP43
2L	19798565	2L_19798565_SNP [dm3] 2L_19798565_SNP [dm6]	T	G	5.798e^-4	0.902	INTRON sick
3L	8841804	3L_8841804_SNP [dm3] 3L_8848704_SNP [dm6]	G	A	5.798e^-4	0.902	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	3161085	X_3161085_SNP [dm3] X_3267052_SNP [dm6]	A	G	5.806e^-4	0.902	INTRON dnc
3L	7087735	3L_7087735_INS [dm3] 3L_7094635_INS [dm6]	T	TGAA	5.815e^-4	0.902	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2L	11577652	2L_11577652_SNP [dm3] 2L_11577652_SNP [dm6]	T	C	5.823e^-4	0.902	INTERGENIC
2R	1737008	2R_1737008_SNP [dm3] 2R_5849503_SNP [dm6]	G	T	5.870e^-4	0.902	INTRON dpr12
2L	19832125	2L_19832125_SNP [dm3] 2L_19832125_SNP [dm6]	C	G	5.873e^-4	0.902	INTRON sick
2L	19832127	2L_19832127_SNP [dm3] 2L_19832127_SNP [dm6]	A	G	5.873e^-4	0.902	INTRON sick
2L	4613587	2L_4613587_SNP [dm3] 2L_4613587_SNP [dm6]	T	C	5.929e^-4	0.902	INTRON dp	TF binding site BDTNP1_TFBS_dl
2L	449931	2L_449931_SNP [dm3] 2L_449931_SNP [dm6]	A	C	5.944e^-4	0.902	NON_SYNONYMOUS_CODING crq	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18353949	X_18353949_SNP [dm3] X_18459916_SNP [dm6]	C	T	5.952e^-4	0.902	NON_SYNONYMOUS_CODING CG43843 UPSTREAM CR43842 INTRON CG32547
3L	11027244	3L_11027244_SNP [dm3] 3L_11034144_SNP [dm6]	A	G	5.955e^-4	0.902	UPSTREAM CR44547 INTERGENIC
2R	2674807	2R_2674807_SNP [dm3] 2R_6787302_SNP [dm6]	T	C	5.972e^-4	0.902	INTRON Epac
3R	25664828	3R_25664828_SNP [dm3] 3R_29839106_SNP [dm6]	G	A	5.972e^-4	0.902	INTERGENIC	TF binding site mE1_TFBS_inv
2R	6588405	2R_6588405_SNP [dm3] 2R_10700900_SNP [dm6]	C	A	5.976e^-4	0.902	INTRON stan
2R	5337233	2R_5337233_SNP [dm3] 2R_9449728_SNP [dm6]	G	T	5.980e^-4	0.902	INTRON Camta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6360601	2R_6360601_SNP [dm3] 2R_10473096_SNP [dm6]	A	C	5.985e^-4	0.902	SYNONYMOUS_CODING whd	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16216593	3L_16216593_SNP [dm3] 3L_16223493_SNP [dm6]	C	T	5.994e^-4	0.902	INTERGENIC
2R	2407037	2R_2407037_SNP [dm3] 2R_6519532_SNP [dm6]	G	C	5.999e^-4	0.902	INTRON jing	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18698487	2R_18698487_SNP [dm3] 2R_22810982_SNP [dm6]	T	A	6.005e^-4	0.902	INTRON stl
2R	13741359	2R_13741359_SNP [dm3] 2R_17853854_SNP [dm6]	G	A	6.023e^-4	0.902	NON_SYNONYMOUS_CODING CG30323 INTRON olf186-F & 1 other
2R	13741363	2R_13741363_SNP [dm3] 2R_17853858_SNP [dm6]	T	G	6.023e^-4	0.902	NON_SYNONYMOUS_CODING CG30323 INTRON olf186-F & 1 other
2L	3062220	2L_3062220_SNP [dm3] 2L_3062220_SNP [dm6]	C	T	6.029e^-4	0.902	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	16546005	3L_16546005_SNP [dm3] 3L_16552905_SNP [dm6]	G	A	6.033e^-4	0.902	INTERGENIC
2L	3062334	2L_3062334_SNP [dm3] 2L_3062334_SNP [dm6]	A	G	6.034e^-4	0.902	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11577707	2L_11577707_SNP [dm3] 2L_11577707_SNP [dm6]	A	T	6.037e^-4	0.902	INTERGENIC
X	14732758	X_14732758_SNP [dm3] X_14838725_SNP [dm6]	A	G	6.038e^-4	0.902	SYNONYMOUS_CODING CG32590 UPSTREAM CG14407 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
X	14733086	X_14733086_SNP [dm3] X_14839053_SNP [dm6]	T	A	6.038e^-4	0.902	UTR_5_PRIME CG32590 UPSTREAM CG14407 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
X	14733233	X_14733233_SNP [dm3] X_14839200_SNP [dm6]	A	G	6.038e^-4	0.902	UPSTREAM Flo2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	2665776	3L_2665776_SNP [dm3] 3L_2665776_SNP [dm6]	T	C	6.051e^-4	0.902	INTRON Fife
3R	7326694	3R_7326694_SNP [dm3] 3R_11500972_SNP [dm6]	T	G	6.053e^-4	0.902	UPSTREAM dpr5 INTRON dpr5	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Kr
X	19355716	X_19355716_SNP [dm3] X_19461683_SNP [dm6]	T	A	6.067e^-4	0.902	INTRON kek5
3L	15487551	3L_15487551_SNP [dm3] 3L_15494451_SNP [dm6]	T	G	6.078e^-4	0.902	UPSTREAM CG12355 INTRON CG12355	TF binding site mE1_TFBS_Trl
X	9628029	X_9628029_SNP [dm3] X_9733996_SNP [dm6]	C	T	6.080e^-4	0.902	INTRON Sp1	TF binding site mE1_TFBS_cnc
2L	11581366	2L_11581366_DEL [dm3] 2L_11581366_DEL [dm6]	ATAGAACGGAA...	A	6.087e^-4	0.902	UPSTREAM kek2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3972448	3L_3972448_SNP [dm3] 3L_3972448_SNP [dm6]	G	T	6.100e^-4	0.902	UPSTREAM CG43915 INTERGENIC
3R	4818686	3R_4818686_SNP [dm3] 3R_8992964_SNP [dm6]	A	G	6.107e^-4	0.902	UPSTREAM CG11975 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2680503	X_2680503_SNP [dm3] X_2786470_SNP [dm6]	A	C	6.109e^-4	0.902	INTRON kirre & 1 other
X	2680534	X_2680534_SNP [dm3] X_2786501_SNP [dm6]	C	T	6.109e^-4	0.902	INTRON kirre & 1 other
3R	16895101	3R_16895101_SNP [dm3] 3R_21069379_SNP [dm6]	C	T	6.116e^-4	0.902	UTR_3_PRIME AnxB9 INTRON AnxB9	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	1786063	2L_1786063_SNP [dm3] 2L_1786063_SNP [dm6]	T	C	6.120e^-4	0.902	DOWNSTREAM Gr22e INTERGENIC
2L	8501845	2L_8501845_SNP [dm3] 2L_8501845_SNP [dm6]	G	A	6.122e^-4	0.902	INTRON Dh31
2L	8501850	2L_8501850_SNP [dm3] 2L_8501850_SNP [dm6]	A	G	6.122e^-4	0.902	INTRON Dh31
3L	2655054	3L_2655054_SNP [dm3] 3L_2655054_SNP [dm6]	C	T	6.126e^-4	0.902	NON_SYNONYMOUS_CODING CG42304 UTR_3_PRIME Snup DOWNSTREAM Fife
2R	6598784	2R_6598784_SNP [dm3] 2R_10711279_SNP [dm6]	C	A	6.135e^-4	0.902	SYNONYMOUS_CODING stan
2R	17859402	2R_17859402_SNP [dm3] 2R_21971897_SNP [dm6]	A	G	6.140e^-4	0.902	UPSTREAM CG34029 INTERGENIC
X	9248940	X_9248940_SNP [dm3] X_9354907_SNP [dm6]	A	T	6.157e^-4	0.902	UTR_5_PRIME CG34449	TF binding site BDTNP1_TFBS_dl
3R	10438460	3R_10438460_SNP [dm3] 3R_14612738_SNP [dm6]	C	A	6.160e^-4	0.902	INTRON CG14853
2R	6146280	2R_6146280_SNP [dm3] 2R_10258775_SNP [dm6]	G	A	6.160e^-4	0.902	INTRON CG12911
3L	1547434	3L_1547434_SNP [dm3] 3L_1547434_SNP [dm6]	C	T	6.165e^-4	0.902	UTR_5_PRIME Cct1 UPSTREAM Cct1 INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	1548751	3L_1548751_SNP [dm3] 3L_1548751_SNP [dm6]	A	G	6.165e^-4	0.902	INTRON Cct1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20092443	2R_20092443_SNP [dm3] 2R_24204920_SNP [dm6]	A	C	6.171e^-4	0.902	UTR_3_PRIME CG11406 INTRON CG11406
3L	22307699	3L_22307699_SNP [dm3] 3L_22314599_SNP [dm6]	T	C	6.180e^-4	0.902	INTRON Ten-m
2L	19913792	2L_19913792_INS [dm3] 2L_19913792_INS [dm6]	A	AACA	6.182e^-4	0.902	UPSTREAM Victoria INTRON sick
3L	2674184	3L_2674184_SNP [dm3] 3L_2674184_SNP [dm6]	G	T	6.186e^-4	0.902	INTRON Fife
2L	1678307	2L_1678307_SNP [dm3] 2L_1678307_SNP [dm6]	G	T	6.206e^-4	0.902	INTRON chinmo
3R	14437267	3R_14437267_SNP [dm3] 3R_18611545_SNP [dm6]	T	A	6.208e^-4	0.902	INTRON qin & 1 other
2L	15761479	2L_15761479_SNP [dm3] 2L_15761479_SNP [dm6]	A	C	6.209e^-4	0.902	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	19833362	2L_19833362_SNP [dm3] 2L_19833362_SNP [dm6]	G	A	6.210e^-4	0.902	INTRON sick
3L	2372721	3L_2372721_SNP [dm3] 3L_2372721_SNP [dm6]	C	T	6.214e^-4	0.902	SYNONYMOUS_CODING CG8993 UPSTREAM CG1317 DOWNSTREAM mRpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	19679751	2L_19679751_SNP [dm3] 2L_19679751_SNP [dm6]	C	A	6.216e^-4	0.902	INTRON Lar
2L	19680580	2L_19680580_SNP [dm3] 2L_19680580_SNP [dm6]	G	C	6.216e^-4	0.902	INTRON Lar	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10915275	2L_10915275_SNP [dm3] 2L_10915275_SNP [dm6]	G	A	6.242e^-4	0.902	INTERGENIC
2L	2849551	2L_2849551_SNP [dm3] 2L_2849551_SNP [dm6]	A	G	6.245e^-4	0.902	UTR_3_PRIME CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad
2R	19225562	2R_19225562_SNP [dm3] 2R_23338039_SNP [dm6]	A	C	6.264e^-4	0.902	INTERGENIC
3L	5305809	3L_5305809_SNP [dm3] 3L_5312709_SNP [dm6]	G	A	6.289e^-4	0.902	INTERGENIC
3L	3382154	3L_3382154_DEL [dm3] 3L_3382154_DEL [dm6]	CAAAACGTTGTC...	C	6.297e^-4	0.902	INTERGENIC
X	8754289	X_8754289_SNP [dm3] X_8860256_SNP [dm6]	T	C	6.343e^-4	0.902	INTRON CG12075
X	14080743	X_14080743_SNP [dm3] X_14186710_SNP [dm6]	A	G	6.349e^-4	0.902	UPSTREAM CG12481 DOWNSTREAM CG32603 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	24604142	3R_24604142_SNP [dm3] 3R_28778420_SNP [dm6]	G	T	6.350e^-4	0.902	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11703228	3R_11703228_SNP [dm3] 3R_15877506_SNP [dm6]	C	A	6.373e^-4	0.902	INTERGENIC
2R	17974177	2R_17974177_SNP [dm3] 2R_22086672_SNP [dm6]	C	A	6.373e^-4	0.902	DOWNSTREAM Synj INTRON CG13502
3L	2545868	3L_2545868_SNP [dm3] 3L_2545868_SNP [dm6]	C	T	6.374e^-4	0.902	INTRON Spn
X	15869406	X_15869406_SNP [dm3] X_15975373_SNP [dm6]	A	G	6.375e^-4	0.902	SYNONYMOUS_CODING Or13a
3L	12462754	3L_12462754_INS [dm3] 3L_12469654_INS [dm6]	C	CCCC	6.377e^-4	0.902	INTRON CG32102	TF binding site mE1_TFBS_sens
2L	14770468	2L_14770468_SNP [dm3] 2L_14770468_SNP [dm6]	T	G	6.397e^-4	0.902	INTERGENIC
2L	1253518	2L_1253518_SNP [dm3] 2L_1253518_SNP [dm6]	A	G	6.439e^-4	0.902	INTERGENIC
3R	26469845	3R_26469845_SNP [dm3] 3R_30644123_SNP [dm6]	T	G	6.441e^-4	0.902	SYNONYMOUS_CODING CG31013
2R	11972845	2R_11972845_SNP [dm3] 2R_16085340_SNP [dm6]	C	G	6.442e^-4	0.902	SYNONYMOUS_CODING Dg	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	3641035	2R_3641035_SNP [dm3] 2R_7753530_SNP [dm6]	G	A	6.443e^-4	0.902	INTRON CG30497 & 1 other

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.712e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01069

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	4.7774	0.0288

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1465 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	13261758	2L_13261758_SNP [dm3] 2L_13261758_SNP [dm6]	G	T	4.833e^-7	0.223	INTRON CG44085
2L	13261761	2L_13261761_SNP [dm3] 2L_13261761_SNP [dm6]	A	G	5.586e^-7	0.223	INTRON CG44085
2L	13261779	2L_13261779_SNP [dm3] 2L_13261779_SNP [dm6]	G	A	5.593e^-7	0.223	INTRON CG44085
X	11195001	X_11195001_SNP [dm3] X_11300968_SNP [dm6]	C	A	1.749e^-6	0.223	INTRON CG44422
3L	1068671	3L_1068671_SNP [dm3] 3L_1068671_SNP [dm6]	G	A	1.762e^-6	0.223	INTRON bab1
3R	21959710	3R_21959710_SNP [dm3] 3R_26133988_SNP [dm6]	T	C	1.823e^-6	0.223	INTRON CG6142
X	8812813	X_8812813_SNP [dm3] X_8918780_SNP [dm6]	A	G	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812820	X_8812820_DEL [dm3] X_8918787_DEL [dm6]	GCCGTGGAAA	G	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812832	X_8812832_SNP [dm3] X_8918799_SNP [dm6]	G	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812833	X_8812833_DEL [dm3] X_8918800_DEL [dm6]	CC	C	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812839	X_8812839_SNP [dm3] X_8918806_SNP [dm6]	G	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812840	X_8812840_SNP [dm3] X_8918807_SNP [dm6]	A	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812843	X_8812843_SNP [dm3] X_8918810_SNP [dm6]	G	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812844	X_8812844_SNP [dm3] X_8918811_SNP [dm6]	A	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812868	X_8812868_SNP [dm3] X_8918835_SNP [dm6]	C	T	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
X	8812881	X_8812881_INS [dm3] X_8918848_INS [dm6]	T	TGTCTTTTTCCGCTT...	1.963e^-6	0.223	DOWNSTREAM CR44111 INTRON rdgA
3R	23151887	3R_23151887_SNP [dm3] 3R_27326165_SNP [dm6]	A	G	2.306e^-6	0.247	INTERGENIC
3L	11171657	3L_11171657_SNP [dm3] 3L_11178557_SNP [dm6]	A	T	4.180e^-6	0.423	INTRON GlcAT-P	TF binding site mE1_TFBS_chinmo
X	8835971	X_8835971_SNP [dm3] X_8941938_SNP [dm6]	C	T	5.777e^-6	0.553	INTRON rdgA
2R	8528004	2R_8528004_SNP [dm3] 2R_12640499_SNP [dm6]	A	T	6.336e^-6	0.577	UTR_3_PRIME Iswi DOWNSTREAM CG8785
X	11194990	X_11194990_SNP [dm3] X_11300957_SNP [dm6]	A	G	6.741e^-6	0.584	INTRON CG44422
2L	15209075	2L_15209075_SNP [dm3] 2L_15209075_SNP [dm6]	T	G	8.033e^-6	0.665	DOWNSTREAM CR44196 INTERGENIC
2R	3080310	2R_3080310_SNP [dm3] 2R_7192805_SNP [dm6]	A	G	8.466e^-6	0.67	UTR_5_PRIME pk INTRON pk	TF binding site BDTNP1_TFBS_prd
2R	4505073	2R_4505073_SNP [dm3] 2R_8617568_SNP [dm6]	A	C	8.837e^-6	0.67	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13676338	2L_13676338_SNP [dm3] 2L_13676338_SNP [dm6]	T	C	1.007e^-5	0.733	DOWNSTREAM CG31814 INTERGENIC
3R	26261965	3R_26261965_SNP [dm3] 3R_30436243_SNP [dm6]	T	C	1.301e^-5	0.911	NON_SYNONYMOUS_CODING CG15537	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19699560	2L_19699560_SNP [dm3] 2L_19699560_SNP [dm6]	A	T	1.372e^-5	0.921	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2706864	3L_2706864_SNP [dm3] 3L_2706864_SNP [dm6]	G	C	1.561e^-5	0.921	INTRON Fife
2R	8687793	2R_8687793_SNP [dm3] 2R_12800288_SNP [dm6]	A	C	1.649e^-5	0.921	SYNONYMOUS_CODING sca	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13659388	3R_13659388_SNP [dm3] 3R_17833666_SNP [dm6]	C	T	1.712e^-5	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	4505066	2R_4505066_SNP [dm3] 2R_8617561_SNP [dm6]	A	T	1.787e^-5	0.921	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16679842	3R_16679842_SNP [dm3] 3R_20854120_SNP [dm6]	A	G	1.899e^-5	0.921	SYNONYMOUS_CODING Ir93a UPSTREAM mir-1011
2L	19699577	2L_19699577_SNP [dm3] 2L_19699577_SNP [dm6]	T	C	1.950e^-5	0.921	UTR_3_PRIME scw DOWNSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
4	925536	4_925536_SNP [dm3] 4_904910_SNP [dm6]	C	A	1.951e^-5	0.921	UTR_5_PRIME unc-13 UPSTREAM unc-13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	6029491	2L_6029491_SNP [dm3] 2L_6029491_SNP [dm6]	G	A	1.973e^-5	0.921	INTRON CG9109
2L	4658157	2L_4658157_INS [dm3] 2L_4658157_INS [dm6]	A	AT	2.110e^-5	0.921	INTERGENIC
2L	4658160	2L_4658160_SNP [dm3] 2L_4658160_SNP [dm6]	C	T	2.110e^-5	0.921	INTERGENIC
3R	13659391	3R_13659391_SNP [dm3] 3R_17833669_SNP [dm6]	A	T	2.534e^-5	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl
2R	14140915	2R_14140915_SNP [dm3] 2R_18253410_SNP [dm6]	C	T	2.680e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12167218	2R_12167218_INS [dm3] 2R_16279713_INS [dm6]	T	TC	2.696e^-5	0.921	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	12167222	2R_12167222_SNP [dm3] 2R_16279717_SNP [dm6]	C	T	2.696e^-5	0.921	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
4	718910	4_718910_SNP [dm3] 4_698284_SNP [dm6]	C	A	2.793e^-5	0.921	INTRON ey	TF binding site BDTNP1_TFBS_dl
3R	17354920	3R_17354920_SNP [dm3] 3R_21529198_SNP [dm6]	G	A	2.951e^-5	0.921	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	7382473	3R_7382473_SNP [dm3] 3R_11556751_SNP [dm6]	A	T	2.968e^-5	0.921	INTERGENIC
3L	2425652	3L_2425652_SNP [dm3] 3L_2425652_SNP [dm6]	T	C	3.077e^-5	0.921	INTRON CG45186	TF binding site mE1_TFBS_bab1
3R	25426989	3R_25426989_INS [dm3] 3R_29601267_INS [dm6]	A	AACTTTAT	3.111e^-5	0.921	UPSTREAM CG7568 INTRON alph
X	12321561	X_12321561_DEL [dm3] X_12427528_DEL [dm6]	CGCAATTCAACTCC...	C	3.115e^-5	0.921	INTERGENIC
3R	16175436	3R_16175436_SNP [dm3] 3R_20349714_SNP [dm6]	G	A	3.186e^-5	0.921	INTERGENIC
3R	16175455	3R_16175455_SNP [dm3] 3R_20349733_SNP [dm6]	T	A	3.186e^-5	0.921	INTERGENIC
3R	17356312	3R_17356312_SNP [dm3] 3R_21530590_SNP [dm6]	T	A	3.206e^-5	0.921	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2682633	3L_2682633_SNP [dm3] 3L_2682633_SNP [dm6]	C	T	3.298e^-5	0.921	INTRON Fife
3R	23134913	3R_23134913_SNP [dm3] 3R_27309191_SNP [dm6]	C	T	3.521e^-5	0.921	INTRON CG3339
2L	8580229	2L_8580229_SNP [dm3] 2L_8580229_SNP [dm6]	A	C	3.530e^-5	0.921	INTRON Sema-1a
2L	14992865	2L_14992865_SNP [dm3] 2L_14992865_SNP [dm6]	T	A	3.531e^-5	0.921	INTRON mol
3L	2653035	3L_2653035_SNP [dm3] 3L_2653035_SNP [dm6]	A	C	3.559e^-5	0.921	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
3L	2639956	3L_2639956_SNP [dm3] 3L_2639956_SNP [dm6]	G	C	3.621e^-5	0.921	INTRON MEP-1 & 1 other	TF binding site mE1_TFBS_chinmo
2L	9217328	2L_9217328_SNP [dm3] 2L_9217328_SNP [dm6]	T	A	3.631e^-5	0.921	INTRON tai
2L	9217344	2L_9217344_SNP [dm3] 2L_9217344_SNP [dm6]	T	A	3.631e^-5	0.921	INTRON tai
3R	22364642	3R_22364642_SNP [dm3] 3R_26538920_SNP [dm6]	G	C	3.822e^-5	0.921	INTRON scrib
2R	16951672	2R_16951672_SNP [dm3] 2R_21064167_SNP [dm6]	A	T	3.875e^-5	0.921	DOWNSTREAM Cht8 INTRON Cht12
2R	16951686	2R_16951686_SNP [dm3] 2R_21064181_SNP [dm6]	G	A	3.875e^-5	0.921	DOWNSTREAM Cht8 INTRON Cht12
2R	6251390	2R_6251390_SNP [dm3] 2R_10363885_SNP [dm6]	G	T	4.047e^-5	0.921	DOWNSTREAM Gr47a INTRON CG42732
3R	25289906	3R_25289906_SNP [dm3] 3R_29464184_SNP [dm6]	A	G	4.082e^-5	0.921	INTRON Ptp99A	TF binding site mE1_TFBS_cad
3L	3325927	3L_3325927_SNP [dm3] 3L_3325927_SNP [dm6]	G	A	4.084e^-5	0.921	UTR_5_PRIME CG11526 UPSTREAM PHGPx INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	17718230	2R_17718230_SNP [dm3] 2R_21830725_SNP [dm6]	T	C	4.183e^-5	0.921	INTRON CG13492
X	8722244	X_8722244_SNP [dm3] X_8828211_SNP [dm6]	T	A	4.257e^-5	0.921	INTERGENIC
3R	25426986	3R_25426986_SNP [dm3] 3R_29601264_SNP [dm6]	T	C	4.281e^-5	0.921	UPSTREAM CG7568 INTRON alph
2L	4658155	2L_4658155_SNP [dm3] 2L_4658155_SNP [dm6]	T	C	4.302e^-5	0.921	INTERGENIC
2L	10858258	2L_10858258_SNP [dm3] 2L_10858258_SNP [dm6]	C	T	4.379e^-5	0.921	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	19698132	2L_19698132_SNP [dm3] 2L_19698132_SNP [dm6]	G	A	4.597e^-5	0.921	INTRON Lar
2L	1277417	2L_1277417_SNP [dm3] 2L_1277417_SNP [dm6]	G	A	4.708e^-5	0.921	INTRON robo3
3L	17277728	3L_17277728_SNP [dm3] 3L_17284628_SNP [dm6]	G	A	4.968e^-5	0.921	INTERGENIC
3R	16175449	3R_16175449_SNP [dm3] 3R_20349727_SNP [dm6]	T	C	5.008e^-5	0.921	INTERGENIC
3L	715933	3L_715933_SNP [dm3] 3L_715933_SNP [dm6]	A	G	5.025e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13067377	3R_13067377_SNP [dm3] 3R_17241655_SNP [dm6]	G	A	5.041e^-5	0.921	INTRON beat-IIb
X	21100288	X_21100288_DEL [dm3] X_21229261_DEL [dm6]	ACAAATGGA	A	5.044e^-5	0.921	INTRON CG32521
X	18354033	X_18354033_SNP [dm3] X_18460000_SNP [dm6]	C	G	5.216e^-5	0.921	NON_SYNONYMOUS_CODING CG43843 UPSTREAM CR43842 INTRON CG32547
2R	12167612	2R_12167612_SNP [dm3] 2R_16280107_SNP [dm6]	T	C	5.398e^-5	0.921	UTR_5_PRIME CG15704 UPSTREAM CG15705
3R	17356326	3R_17356326_SNP [dm3] 3R_21530604_SNP [dm6]	C	T	5.446e^-5	0.921	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17356328	3R_17356328_SNP [dm3] 3R_21530606_SNP [dm6]	T	A	5.446e^-5	0.921	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24904425	3R_24904425_SNP [dm3] 3R_29078703_SNP [dm6]	T	G	5.566e^-5	0.921	INTRON CG11873
X	4398115	X_4398115_DEL [dm3] X_4504082_DEL [dm6]	CC	C	5.696e^-5	0.921	INTRON CR32773
2L	5620658	2L_5620658_SNP [dm3] 2L_5620658_SNP [dm6]	C	A	5.743e^-5	0.921	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2R	14185451	2R_14185451_INS [dm3] 2R_18297946_INS [dm6]	A	CCC	5.786e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	17411782	3L_17411782_SNP [dm3] 3L_17418682_SNP [dm6]	T	C	5.811e^-5	0.921	INTRON blot
2R	16951701	2R_16951701_SNP [dm3] 2R_21064196_SNP [dm6]	A	C	5.833e^-5	0.921	DOWNSTREAM Cht8 INTRON Cht12
3L	2653039	3L_2653039_SNP [dm3] 3L_2653039_SNP [dm6]	G	A	6.149e^-5	0.921	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
X	12321549	X_12321549_SNP [dm3] X_12427516_SNP [dm6]	C	A	6.205e^-5	0.921	INTERGENIC
2L	12337252	2L_12337252_SNP [dm3] 2L_12337252_SNP [dm6]	C	A	6.338e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3908788	3L_3908788_SNP [dm3] 3L_3908788_SNP [dm6]	G	A	6.362e^-5	0.921	UTR_3_PRIME mge DOWNSTREAM ida INTRON mge	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
2L	11653245	2L_11653245_SNP [dm3] 2L_11653245_SNP [dm6]	G	T	6.402e^-5	0.921	SYNONYMOUS_CODING CG4983	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11653299	2L_11653299_SNP [dm3] 2L_11653299_SNP [dm6]	T	G	6.402e^-5	0.921	SYNONYMOUS_CODING CG4983	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7872400	X_7872400_SNP [dm3] X_7978367_SNP [dm6]	C	A	6.487e^-5	0.921	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13676413	2L_13676413_SNP [dm3] 2L_13676413_SNP [dm6]	T	G	6.559e^-5	0.921	DOWNSTREAM CG31814 INTERGENIC
3L	12830144	3L_12830144_SNP [dm3] 3L_12837044_SNP [dm6]	A	T	6.713e^-5	0.921	INTRON CG10960	TF binding site mE1_TFBS_HSA
3R	21879911	3R_21879911_SNP [dm3] 3R_26054189_SNP [dm6]	G	A	6.781e^-5	0.921	DOWNSTREAM Dak1 & 1 other INTERGENIC
2L	4658156	2L_4658156_SNP [dm3] 2L_4658156_SNP [dm6]	G	C	6.828e^-5	0.921	INTERGENIC
3R	22684478	3R_22684478_SNP [dm3] 3R_26858756_SNP [dm6]	A	T	6.897e^-5	0.921	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	8437816	3L_8437816_SNP [dm3] 3L_8444716_SNP [dm6]	T	C	7.022e^-5	0.921	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	526662	2L_526662_SNP [dm3] 2L_526662_SNP [dm6]	C	T	7.049e^-5	0.921	INTRON ush	regulatory region REDfly_CRMs
3R	17356055	3R_17356055_SNP [dm3] 3R_21530333_SNP [dm6]	A	G	7.092e^-5	0.921	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2R	11000154	2R_11000154_SNP [dm3] 2R_15112649_SNP [dm6]	C	A	7.203e^-5	0.921	INTERGENIC
4	902301	4_902301_SNP [dm3] 4_881675_SNP [dm6]	A	T	7.319e^-5	0.921	INTRON unc-13 EXON CR44029
3R	25426983	3R_25426983_INS [dm3] 3R_29601261_INS [dm6]	T	TTTATAC	7.336e^-5	0.921	UPSTREAM CG7568 INTRON alph
3L	6619197	3L_6619197_SNP [dm3] 3L_6626097_SNP [dm6]	A	G	7.439e^-5	0.921	INTRON GluRIA
3R	11338203	3R_11338203_SNP [dm3] 3R_15512481_SNP [dm6]	C	T	7.489e^-5	0.921	INTERGENIC
X	12438043	X_12438043_SNP [dm3] X_12544010_SNP [dm6]	G	T	7.525e^-5	0.921	INTRON CG43921
2R	14185423	2R_14185423_SNP [dm3] 2R_18297918_SNP [dm6]	G	A	7.608e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	7272883	3L_7272883_INS [dm3] 3L_7279783_INS [dm6]	A	AAACTAACTTATAATTTGAC...	7.638e^-5	0.921	INTRON unc-13-4A
2R	6758939	2R_6758939_SNP [dm3] 2R_10871434_SNP [dm6]	C	A	7.714e^-5	0.921	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4026580	3L_4026580_SNP [dm3] 3L_4026580_SNP [dm6]	C	T	7.769e^-5	0.921	UPSTREAM Gr64a & 1 other INTERGENIC
3R	22684418	3R_22684418_SNP [dm3] 3R_26858696_SNP [dm6]	A	G	7.800e^-5	0.921	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	3325980	3L_3325980_SNP [dm3] 3L_3325980_SNP [dm6]	A	C	7.873e^-5	0.921	UTR_5_PRIME CG11526 UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22684457	3R_22684457_SNP [dm3] 3R_26858735_SNP [dm6]	A	T	7.927e^-5	0.921	INTRON Lerp	TF binding site mE1_TFBS_chinmo
2L	12337235	2L_12337235_SNP [dm3] 2L_12337235_SNP [dm6]	G	A	8.044e^-5	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
4	719169	4_719169_SNP [dm3] 4_698543_SNP [dm6]	C	T	8.070e^-5	0.921	INTRON ey
3L	4414846	3L_4414846_SNP [dm3] 3L_4414846_SNP [dm6]	G	C	8.167e^-5	0.921	UTR_5_PRIME DOR INTRON DOR
3R	1477419	3R_1477419_SNP [dm3] 3R_5651697_SNP [dm6]	C	A	8.269e^-5	0.921	SYNONYMOUS_CODING Sec23 DOWNSTREAM elm	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10970102	2R_10970102_SNP [dm3] 2R_15082597_SNP [dm6]	T	A	8.275e^-5	0.921	INTERGENIC
2L	1378309	2L_1378309_SNP [dm3] 2L_1378309_SNP [dm6]	G	A	8.448e^-5	0.921	INTERGENIC
2L	2630591	2L_2630591_SNP [dm3] 2L_2630591_SNP [dm6]	T	G	8.467e^-5	0.921	INTERGENIC
2R	14185489	2R_14185489_SNP [dm3] 2R_18297984_SNP [dm6]	G	T	8.636e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	10683104	3L_10683104_SNP [dm3] 3L_10690004_SNP [dm6]	G	A	8.642e^-5	0.921	UTR_3_PRIME simj DOWNSTREAM simj
3R	25664828	3R_25664828_SNP [dm3] 3R_29839106_SNP [dm6]	G	A	8.650e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
X	20044460	X_20044460_SNP [dm3] X_20150427_SNP [dm6]	T	C	8.713e^-5	0.921	INTRON CG9572
X	20044462	X_20044462_DEL [dm3] X_20150429_DEL [dm6]	GTAT	G	8.713e^-5	0.921	INTRON CG9572
X	20044474	X_20044474_DEL [dm3] X_20150441_DEL [dm6]	GTATAGTATAGTATAGTATA...	C	8.713e^-5	0.921	INTRON CG9572
3L	2402631	3L_2402631_SNP [dm3] 3L_2402631_SNP [dm6]	A	G	8.739e^-5	0.921	NON_SYNONYMOUS_CODING CG45186 UTR_5_PRIME CG45186 INTRON CG45186	TF binding site mE1_TFBS_cad
3R	22419337	3R_22419337_DEL [dm3] 3R_26593615_DEL [dm6]	CC	C	8.748e^-5	0.921	INTRON scrib
3L	6293672	3L_6293672_SNP [dm3] 3L_6300572_SNP [dm6]	C	A	8.948e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16951670	2R_16951670_SNP [dm3] 2R_21064165_SNP [dm6]	G	T	8.977e^-5	0.921	DOWNSTREAM Cht8 INTRON Cht12
2R	9422032	2R_9422032_DEL [dm3] 2R_13534527_DEL [dm6]	TAA	CT	9.002e^-5	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	18353949	X_18353949_SNP [dm3] X_18459916_SNP [dm6]	C	T	9.006e^-5	0.921	NON_SYNONYMOUS_CODING CG43843 UPSTREAM CR43842 INTRON CG32547
2L	3043961	2L_3043961_SNP [dm3] 2L_3043961_SNP [dm6]	C	T	9.115e^-5	0.921	START_GAINED v_2_k05816 UTR_5_PRIME v_2_k05816 DOWNSTREAM CG17261
2R	12167229	2R_12167229_SNP [dm3] 2R_16279724_SNP [dm6]	C	A	9.155e^-5	0.921	UPSTREAM CG15704 INTERGENIC
3R	25426985	3R_25426985_SNP [dm3] 3R_29601263_SNP [dm6]	C	T	9.177e^-5	0.921	UPSTREAM CG7568 INTRON alph
2R	18950195	2R_18950195_SNP [dm3] 2R_23062672_SNP [dm6]	G	T	9.263e^-5	0.921	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	13063591	X_13063591_SNP [dm3] X_13169558_SNP [dm6]	G	T	9.276e^-5	0.921	INTRON CG34411
3R	13659612	3R_13659612_SNP [dm3] 3R_17833890_SNP [dm6]	G	C	9.285e^-5	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	16951673	2R_16951673_SNP [dm3] 2R_21064168_SNP [dm6]	C	A	9.293e^-5	0.921	DOWNSTREAM Cht8 INTRON Cht12
3L	428506	3L_428506_SNP [dm3] 3L_428506_SNP [dm6]	G	T	9.297e^-5	0.921	INTERGENIC
3L	2425534	3L_2425534_SNP [dm3] 3L_2425534_SNP [dm6]	C	T	9.337e^-5	0.921	INTRON CG45186	TF binding site mE1_TFBS_bab1
3R	13068006	3R_13068006_SNP [dm3] 3R_17242284_SNP [dm6]	C	A	9.450e^-5	0.921	INTRON beat-IIb
2R	8546397	2R_8546397_SNP [dm3] 2R_12658892_SNP [dm6]	G	T	9.509e^-5	0.921	NON_SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
3L	8437847	3L_8437847_SNP [dm3] 3L_8444747_SNP [dm6]	A	G	9.512e^-5	0.921	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8437848	3L_8437848_SNP [dm3] 3L_8444748_SNP [dm6]	C	T	9.512e^-5	0.921	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1337347	2L_1337347_SNP [dm3] 2L_1337347_SNP [dm6]	A	C	9.515e^-5	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
2R	14185472	2R_14185472_SNP [dm3] 2R_18297967_SNP [dm6]	T	C	9.560e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
2L	10858309	2L_10858309_SNP [dm3] 2L_10858309_SNP [dm6]	A	C	9.601e^-5	0.921	UPSTREAM Stam & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	14185456	2R_14185456_SNP [dm3] 2R_18297951_SNP [dm6]	C	T	9.631e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
2R	14185443	2R_14185443_SNP [dm3] 2R_18297938_SNP [dm6]	G	A	9.725e^-5	0.921	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb & 1 other
3L	12621960	3L_12621960_SNP [dm3] 3L_12628860_SNP [dm6]	A	T	9.864e^-5	0.921	INTRON CR32111
3L	15990506	3L_15990506_SNP [dm3] 3L_15997406_SNP [dm6]	A	G	9.948e^-5	0.921	INTRON CG5830
2R	14968671	2R_14968671_SNP [dm3] 2R_19081166_SNP [dm6]	T	C	1.000e^-4	0.921	INTRON 5-HT1A
3R	20422779	3R_20422779_SNP [dm3] 3R_24597057_SNP [dm6]	T	A	1.022e^-4	0.921	INTRON mld	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	16818414	3L_16818414_SNP [dm3] 3L_16825314_SNP [dm6]	A	G	1.025e^-4	0.921	INTRON CG13024
2L	7944257	2L_7944257_SNP [dm3] 2L_7944257_SNP [dm6]	C	G	1.027e^-4	0.921	INTRON Snoo
4	911281	4_911281_SNP [dm3] 4_890655_SNP [dm6]	G	A	1.030e^-4	0.921	SYNONYMOUS_CODING unc-13 INTRON unc-13
3R	22363597	3R_22363597_SNP [dm3] 3R_26537875_SNP [dm6]	T	A	1.046e^-4	0.921	INTRON scrib	TF binding site BDTNP1_TFBS_dl
3L	1068641	3L_1068641_SNP [dm3] 3L_1068641_SNP [dm6]	T	A	1.048e^-4	0.921	INTRON bab1
3L	11486883	3L_11486883_SNP [dm3] 3L_11493783_SNP [dm6]	C	T	1.049e^-4	0.921	UPSTREAM chrb INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25664825	3R_25664825_SNP [dm3] 3R_29839103_SNP [dm6]	A	G	1.052e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
2L	8584081	2L_8584081_SNP [dm3] 2L_8584081_SNP [dm6]	C	T	1.059e^-4	0.921	INTRON Sema-1a
3L	1802936	3L_1802936_SNP [dm3] 3L_1802936_SNP [dm6]	A	G	1.077e^-4	0.921	UPSTREAM CG42676 & 1 other DOWNSTREAM Patj INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9421778	2R_9421778_SNP [dm3] 2R_13534273_SNP [dm6]	G	A	1.084e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	7127609	2R_7127609_SNP [dm3] 2R_11240104_SNP [dm6]	G	T	1.092e^-4	0.921	UTR_5_PRIME CG13215	TF binding site mE1_TFBS_sens
3R	13064142	3R_13064142_SNP [dm3] 3R_17238420_SNP [dm6]	T	C	1.104e^-4	0.921	INTRON beat-IIb
3L	2425549	3L_2425549_SNP [dm3] 3L_2425549_SNP [dm6]	A	G	1.108e^-4	0.921	INTRON CG45186	TF binding site mE1_TFBS_bab1
3L	2425659	3L_2425659_SNP [dm3] 3L_2425659_SNP [dm6]	T	A	1.108e^-4	0.921	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	12167542	2R_12167542_SNP [dm3] 2R_16280037_SNP [dm6]	T	C	1.109e^-4	0.921	UTR_5_PRIME CG15704 UPSTREAM CG15705
2R	11964040	2R_11964040_SNP [dm3] 2R_16076535_SNP [dm6]	T	A	1.127e^-4	0.921	INTERGENIC
3L	18857528	3L_18857528_SNP [dm3] 3L_18864428_SNP [dm6]	G	A	1.127e^-4	0.921	SYNONYMOUS_CODING CG6865
X	20044461	X_20044461_SNP [dm3] X_20150428_SNP [dm6]	A	C	1.135e^-4	0.921	INTRON CG9572
2L	11651287	2L_11651287_SNP [dm3] 2L_11651287_SNP [dm6]	A	C	1.160e^-4	0.921	DOWNSTREAM CG12307 INTERGENIC
3R	10208748	3R_10208748_DEL [dm3] 3R_14383026_DEL [dm6]	CTGAGAGA	C	1.165e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	5532442	3L_5532442_SNP [dm3] 3L_5539342_SNP [dm6]	C	T	1.173e^-4	0.921	NON_SYNONYMOUS_CODING CG10625 UTR_3_PRIME CG10625	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6792444	2R_6792444_SNP [dm3] 2R_10904939_SNP [dm6]	T	A	1.176e^-4	0.921	INTRON CG12943
2R	4205262	2R_4205262_SNP [dm3] 2R_8317757_SNP [dm6]	A	G	1.176e^-4	0.921	INTERGENIC
3R	14147763	3R_14147763_SNP [dm3] 3R_18322041_SNP [dm6]	T	G	1.184e^-4	0.921	INTRON CG31235
2R	13893487	2R_13893487_SNP [dm3] 2R_18005982_SNP [dm6]	A	T	1.189e^-4	0.921	INTRON dpr13 EXON CR44419
2R	13893530	2R_13893530_SNP [dm3] 2R_18006025_SNP [dm6]	T	A	1.189e^-4	0.921	DOWNSTREAM CR44419 INTRON dpr13
3R	22364703	3R_22364703_SNP [dm3] 3R_26538981_SNP [dm6]	C	T	1.219e^-4	0.921	INTRON scrib
2L	15027590	2L_15027590_SNP [dm3] 2L_15027590_SNP [dm6]	C	G	1.221e^-4	0.921	NON_SYNONYMOUS_CODING CG33310 INTRON GABA-B-R1
X	12438071	X_12438071_DEL [dm3] X_12544038_DEL [dm6]	TTG	A	1.227e^-4	0.921	INTRON CG43921
3R	2159378	3R_2159378_SNP [dm3] 3R_6333656_SNP [dm6]	C	T	1.239e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11219230	3L_11219230_SNP [dm3] 3L_11226130_SNP [dm6]	C	A	1.247e^-4	0.921	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	18322984	2R_18322984_SNP [dm3] 2R_22435479_SNP [dm6]	T	C	1.247e^-4	0.921	INTERGENIC
3L	2595558	3L_2595558_SNP [dm3] 3L_2595558_SNP [dm6]	T	C	1.270e^-4	0.921	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182
X	12321552	X_12321552_SNP [dm3] X_12427519_SNP [dm6]	C	A	1.272e^-4	0.921	INTERGENIC
2R	4240680	2R_4240680_SNP [dm3] 2R_8353175_SNP [dm6]	A	G	1.273e^-4	0.921	INTRON pdm3
3R	22403576	3R_22403576_SNP [dm3] 3R_26577854_SNP [dm6]	G	T	1.279e^-4	0.921	DOWNSTREAM scrib INTRON scrib
2R	6792389	2R_6792389_SNP [dm3] 2R_10904884_SNP [dm6]	A	C	1.296e^-4	0.921	SPLICE_SITE_REGION CG12943 INTRON CG12943
3L	738586	3L_738586_SNP [dm3] 3L_738586_SNP [dm6]	T	G	1.304e^-4	0.921	SYNONYMOUS_CODING hng3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2L	2508005	2L_2508005_SNP [dm3] 2L_2508005_SNP [dm6]	G	C	1.305e^-4	0.921	UPSTREAM CR44607 INTERGENIC
3L	2665829	3L_2665829_SNP [dm3] 3L_2665829_SNP [dm6]	T	C	1.316e^-4	0.921	INTRON Fife
3R	22684404	3R_22684404_SNP [dm3] 3R_26858682_SNP [dm6]	T	C	1.328e^-4	0.921	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3R	23266404	3R_23266404_SNP [dm3] 3R_27440682_SNP [dm6]	C	T	1.330e^-4	0.921	UTR_3_PRIME CG43447 INTRON CG44290	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
3R	13775307	3R_13775307_SNP [dm3] 3R_17949585_SNP [dm6]	A	G	1.351e^-4	0.921	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2L	527054	2L_527054_SNP [dm3] 2L_527054_SNP [dm6]	G	T	1.361e^-4	0.921	INTRON ush	regulatory region REDfly_CRMs
2L	527058	2L_527058_SNP [dm3] 2L_527058_SNP [dm6]	G	C	1.361e^-4	0.921	INTRON ush	regulatory region REDfly_CRMs
2R	9422042	2R_9422042_SNP [dm3] 2R_13534537_SNP [dm6]	A	C	1.364e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	19704463	2R_19704463_SNP [dm3] 2R_23816940_SNP [dm6]	G	C	1.372e^-4	0.921	INTRON CG4797
X	8680638	X_8680638_SNP [dm3] X_8786605_SNP [dm6]	G	A	1.376e^-4	0.921	INTRON Lim1	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13068004	3R_13068004_SNP [dm3] 3R_17242282_SNP [dm6]	T	C	1.378e^-4	0.921	INTRON beat-IIb
3R	21867224	3R_21867224_SNP [dm3] 3R_26041502_SNP [dm6]	A	T	1.382e^-4	0.921	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	10192783	2R_10192783_INS [dm3] 2R_14305278_INS [dm6]	T	TATTCAT	1.389e^-4	0.921	INTERGENIC
3L	9078925	3L_9078925_SNP [dm3] 3L_9085825_SNP [dm6]	A	C	1.393e^-4	0.921	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
3R	13045684	3R_13045684_SNP [dm3] 3R_17219962_SNP [dm6]	G	C	1.394e^-4	0.921	UPSTREAM CG31262 INTRON CG31262
2L	13261667	2L_13261667_SNP [dm3] 2L_13261667_SNP [dm6]	T	G	1.402e^-4	0.921	UTR_5_PRIME CG44085 INTRON CG44085
2R	12167621	2R_12167621_SNP [dm3] 2R_16280116_SNP [dm6]	A	G	1.408e^-4	0.921	UTR_5_PRIME CG15704 UPSTREAM CG15705
2R	12167623	2R_12167623_SNP [dm3] 2R_16280118_SNP [dm6]	A	G	1.408e^-4	0.921	START_GAINED CG15704 UTR_5_PRIME CG15704 UPSTREAM CG15705
2L	13296992	2L_13296992_INS [dm3] 2L_13296992_INS [dm6]	G	GG	1.416e^-4	0.921	INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	4638401	3L_4638401_SNP [dm3] 3L_4638401_SNP [dm6]	T	A	1.421e^-4	0.921	INTRON axo
3L	2953862	3L_2953862_SNP [dm3] 3L_2953862_SNP [dm6]	T	A	1.421e^-4	0.921	DOWNSTREAM Shab INTRON Shab
3L	7472150	3L_7472150_SNP [dm3] 3L_7479050_SNP [dm6]	C	A	1.440e^-4	0.921	INTERGENIC
2R	12853253	2R_12853253_SNP [dm3] 2R_16965748_SNP [dm6]	T	C	1.468e^-4	0.921	DOWNSTREAM CR44376 INTERGENIC
2R	12853255	2R_12853255_SNP [dm3] 2R_16965750_SNP [dm6]	C	A	1.468e^-4	0.921	DOWNSTREAM CR44376 INTERGENIC
2R	10999950	2R_10999950_SNP [dm3] 2R_15112445_SNP [dm6]	T	C	1.469e^-4	0.921	INTERGENIC
X	7872298	X_7872298_SNP [dm3] X_7978265_SNP [dm6]	A	G	1.484e^-4	0.921	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7872376	X_7872376_SNP [dm3] X_7978343_SNP [dm6]	A	G	1.484e^-4	0.921	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7872390	X_7872390_SNP [dm3] X_7978357_SNP [dm6]	T	C	1.484e^-4	0.921	INTRON sn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16951662	2R_16951662_SNP [dm3] 2R_21064157_SNP [dm6]	A	T	1.490e^-4	0.921	DOWNSTREAM Cht8 INTRON Cht12
2R	16951699	2R_16951699_SNP [dm3] 2R_21064194_SNP [dm6]	A	G	1.490e^-4	0.921	DOWNSTREAM Cht8 INTRON Cht12
3R	14202561	3R_14202561_SNP [dm3] 3R_18376839_SNP [dm6]	A	T	1.491e^-4	0.921	DOWNSTREAM CR44946 INTERGENIC
3L	10635114	3L_10635114_SNP [dm3] 3L_10642014_SNP [dm6]	T	A	1.491e^-4	0.921	UTR_5_PRIME CG14154 INTRON CG32066 & 1 other
3L	13543709	3L_13543709_INS [dm3] 3L_13550609_INS [dm6]	A	AACTGAAAACGGGATGAAGG...	1.492e^-4	0.921	INTRON bru-3
3L	12621953	3L_12621953_SNP [dm3] 3L_12628853_SNP [dm6]	C	T	1.493e^-4	0.921	INTRON CR32111
2R	9422021	2R_9422021_SNP [dm3] 2R_13534516_SNP [dm6]	A	G	1.495e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	10968907	2R_10968907_SNP [dm3] 2R_15081402_SNP [dm6]	A	C	1.496e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18322962	2R_18322962_SNP [dm3] 2R_22435457_SNP [dm6]	A	T	1.498e^-4	0.921	INTERGENIC
X	9327263	X_9327263_SNP [dm3] X_9433230_SNP [dm6]	T	A	1.500e^-4	0.921	INTRON mgl
2L	2460328	2L_2460328_SNP [dm3] 2L_2460328_SNP [dm6]	G	T	1.528e^-4	0.921	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5672785	3L_5672785_SNP [dm3] 3L_5679685_SNP [dm6]	A	G	1.540e^-4	0.921	INTRON sif
2L	8682038	2L_8682038_DEL [dm3] 2L_8682038_DEL [dm6]	TAA	T	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
2L	8682042	2L_8682042_INS [dm3] 2L_8682042_INS [dm6]	A	AT	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
2L	8682047	2L_8682047_DEL [dm3] 2L_8682047_DEL [dm6]	AG	A	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
2L	8682081	2L_8682081_SNP [dm3] 2L_8682081_SNP [dm6]	T	A	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8682083	2L_8682083_SNP [dm3] 2L_8682083_SNP [dm6]	T	A	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8682085	2L_8682085_SNP [dm3] 2L_8682085_SNP [dm6]	A	G	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	8682090	2L_8682090_SNP [dm3] 2L_8682090_SNP [dm6]	G	C	1.540e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7785060	2L_7785060_SNP [dm3] 2L_7785060_SNP [dm6]	T	C	1.581e^-4	0.921	SYNONYMOUS_CODING CG7154	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	16946850	2R_16946850_SNP [dm3] 2R_21059345_SNP [dm6]	A	T	1.584e^-4	0.921	UTR_3_PRIME cpa DOWNSTREAM CG15653
4	921062	4_921062_SNP [dm3] 4_900436_SNP [dm6]	G	A	1.595e^-4	0.921	SYNONYMOUS_CODING unc-13	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	929421	2L_929421_SNP [dm3] 2L_929421_SNP [dm6]	C	T	1.607e^-4	0.921	INTRON CG4341
X	12622199	X_12622199_SNP [dm3] X_12728166_SNP [dm6]	A	G	1.608e^-4	0.921	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	904179	4_904179_SNP [dm3] 4_883553_SNP [dm6]	G	C	1.616e^-4	0.921	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13893441	2R_13893441_SNP [dm3] 2R_18005936_SNP [dm6]	G	A	1.621e^-4	0.921	INTRON dpr13 EXON CR44419
2R	6141573	2R_6141573_SNP [dm3] 2R_10254068_SNP [dm6]	C	A	1.623e^-4	0.921	INTRON CG12913	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12621931	3L_12621931_SNP [dm3] 3L_12628831_SNP [dm6]	A	G	1.628e^-4	0.921	INTRON CR32111
2L	3692202	2L_3692202_SNP [dm3] 2L_3692202_SNP [dm6]	T	G	1.632e^-4	0.921	NON_SYNONYMOUS_CODING CG16704 DOWNSTREAM CG3513 & 2 others
2L	12910876	2L_12910876_SNP [dm3] 2L_12910876_SNP [dm6]	A	T	1.640e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	22152854	X_22152854_SNP [dm3] X_22751018_SNP [dm6]	C	T	1.646e^-4	0.921	INTRON CR44997
2L	19682216	2L_19682216_SNP [dm3] 2L_19682216_SNP [dm6]	C	T	1.654e^-4	0.921	INTRON Lar
2R	12167230	2R_12167230_INS [dm3] 2R_16279725_INS [dm6]	T	TAT	1.671e^-4	0.921	UPSTREAM CG15704 INTERGENIC
2R	3372773	2R_3372773_SNP [dm3] 2R_7485268_SNP [dm6]	A	G	1.677e^-4	0.921	SYNONYMOUS_CODING wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20422833	3R_20422833_SNP [dm3] 3R_24597111_SNP [dm6]	G	C	1.678e^-4	0.921	INTRON mld	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2L	428272	2L_428272_SNP [dm3] 2L_428272_SNP [dm6]	A	G	1.685e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	11964043	2R_11964043_SNP [dm3] 2R_16076538_SNP [dm6]	G	T	1.714e^-4	0.921	INTERGENIC
2R	6792467	2R_6792467_SNP [dm3] 2R_10904962_SNP [dm6]	A	T	1.731e^-4	0.921	INTRON CG12943
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	1.731e^-4	0.921	INTRON sick
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	1.731e^-4	0.921	INTRON sick
3L	2707458	3L_2707458_SNP [dm3] 3L_2707458_SNP [dm6]	T	C	1.732e^-4	0.921	INTRON Fife
3L	2644999	3L_2644999_SNP [dm3] 3L_2644999_SNP [dm6]	G	T	1.762e^-4	0.921	UPSTREAM CG1143 INTERGENIC
3L	2645001	3L_2645001_SNP [dm3] 3L_2645001_SNP [dm6]	G	A	1.762e^-4	0.921	UPSTREAM CG1143 INTERGENIC
3L	5720313	3L_5720313_SNP [dm3] 3L_5727213_SNP [dm6]	T	A	1.775e^-4	0.921	INTRON sif
3L	2680702	3L_2680702_SNP [dm3] 3L_2680702_SNP [dm6]	C	T	1.789e^-4	0.921	INTRON Fife
3L	3326927	3L_3326927_SNP [dm3] 3L_3326927_SNP [dm6]	C	A	1.790e^-4	0.921	UPSTREAM CG11526 INTRON CG11526 & 1 other	TF binding site mE1_TFBS_cnc
4	917004	4_917004_SNP [dm3] 4_896378_SNP [dm6]	A	C	1.804e^-4	0.921	INTRON unc-13
4	917555	4_917555_SNP [dm3] 4_896929_SNP [dm6]	T	C	1.804e^-4	0.921	INTRON unc-13
4	921497	4_921497_SNP [dm3] 4_900871_SNP [dm6]	C	G	1.804e^-4	0.921	SYNONYMOUS_CODING unc-13
2L	638751	2L_638751_SNP [dm3] 2L_638751_SNP [dm6]	C	G	1.813e^-4	0.921	INTERGENIC
2L	638758	2L_638758_SNP [dm3] 2L_638758_SNP [dm6]	A	G	1.813e^-4	0.921	INTERGENIC
3R	18094917	3R_18094917_SNP [dm3] 3R_22269195_SNP [dm6]	G	T	1.813e^-4	0.921	INTRON SKIP
2L	12337239	2L_12337239_SNP [dm3] 2L_12337239_SNP [dm6]	A	G	1.820e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	12337251	2L_12337251_SNP [dm3] 2L_12337251_SNP [dm6]	G	A	1.820e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18730591	2R_18730591_SNP [dm3] 2R_22843068_SNP [dm6]	A	G	1.853e^-4	0.921	DOWNSTREAM CG9826 INTERGENIC
2R	19649886	2R_19649886_SNP [dm3] 2R_23762363_SNP [dm6]	C	T	1.853e^-4	0.921	INTRON CG9850
3R	21867252	3R_21867252_SNP [dm3] 3R_26041530_SNP [dm6]	T	G	1.854e^-4	0.921	UPSTREAM gro DOWNSTREAM E_spl_m8-HLH INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_jumu mE1_TFBS_Trl
2L	1277423	2L_1277423_SNP [dm3] 2L_1277423_SNP [dm6]	T	G	1.857e^-4	0.921	INTRON robo3
3L	1851038	3L_1851038_SNP [dm3] 3L_1851038_SNP [dm6]	G	T	1.873e^-4	0.921	UTR_3_PRIME CG13936 DOWNSTREAM CG13936
2L	5125767	2L_5125767_SNP [dm3] 2L_5125767_SNP [dm6]	C	A	1.883e^-4	0.921	INTRON Msp300	TF binding site mE1_TFBS_cad
X	20044451	X_20044451_DEL [dm3] X_20150418_DEL [dm6]	ATATATAT	A	1.917e^-4	0.921	INTRON CG9572
2R	13893497	2R_13893497_SNP [dm3] 2R_18005992_SNP [dm6]	C	A	1.931e^-4	0.921	INTRON dpr13 EXON CR44419
2R	6792494	2R_6792494_SNP [dm3] 2R_10904989_SNP [dm6]	C	T	1.931e^-4	0.921	INTRON CG12943
X	12891963	X_12891963_SNP [dm3] X_12997930_SNP [dm6]	T	G	1.931e^-4	0.921	INTRON rad
2R	18950138	2R_18950138_SNP [dm3] 2R_23062615_SNP [dm6]	A	T	1.942e^-4	0.921	UPSTREAM l_2_06496 DOWNSTREAM CG9890 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	19705309	3R_19705309_SNP [dm3] 3R_23879587_SNP [dm6]	A	T	1.946e^-4	0.921	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	19705316	3R_19705316_SNP [dm3] 3R_23879594_SNP [dm6]	C	T	1.946e^-4	0.921	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	8845920	3L_8845920_SNP [dm3] 3L_8852820_SNP [dm6]	A	G	1.949e^-4	0.921	INTRON dally
3R	13659407	3R_13659407_SNP [dm3] 3R_17833685_SNP [dm6]	G	A	1.950e^-4	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3R	13659411	3R_13659411_SNP [dm3] 3R_17833689_SNP [dm6]	T	A	1.950e^-4	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl
3R	13659428	3R_13659428_SNP [dm3] 3R_17833706_SNP [dm6]	T	A	1.950e^-4	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	22419365	3R_22419365_SNP [dm3] 3R_26593643_SNP [dm6]	T	C	1.956e^-4	0.921	INTRON scrib
X	6338271	X_6338271_SNP [dm3] X_6444238_SNP [dm6]	T	C	1.956e^-4	0.921	INTRON CG42340
3R	17661254	3R_17661254_SNP [dm3] 3R_21835532_SNP [dm6]	G	C	1.974e^-4	0.921	INTERGENIC
3L	6906674	3L_6906674_DEL [dm3] 3L_6913574_DEL [dm6]	TTTACAATATA...	T	1.982e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3R	19108619	3R_19108619_SNP [dm3] 3R_23282897_SNP [dm6]	T	A	1.987e^-4	0.921	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
4	935280	4_935280_SNP [dm3] 4_914654_SNP [dm6]	A	G	1.997e^-4	0.921	DOWNSTREAM eIF4G INTERGENIC	transposable element FlyBase
2L	13679615	2L_13679615_SNP [dm3] 2L_13679615_SNP [dm6]	T	C	2.000e^-4	0.921	INTRON CG31814
3L	3316770	3L_3316770_SNP [dm3] 3L_3316770_SNP [dm6]	G	T	2.011e^-4	0.921	UPSTREAM Drsl5 DOWNSTREAM Drsl4 INTERGENIC
2R	3083913	2R_3083913_SNP [dm3] 2R_7196408_SNP [dm6]	A	T	2.022e^-4	0.921	INTRON pk
3R	13659761	3R_13659761_SNP [dm3] 3R_17834039_SNP [dm6]	G	A	2.029e^-4	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	4078877	3L_4078877_SNP [dm3] 3L_4078877_SNP [dm6]	T	C	2.030e^-4	0.921	INTRON Gad1
3R	26729250	3R_26729250_SNP [dm3] 3R_30903528_SNP [dm6]	A	G	2.035e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	5305809	3L_5305809_SNP [dm3] 3L_5312709_SNP [dm6]	G	A	2.047e^-4	0.921	INTERGENIC
X	20756178	X_20756178_SNP [dm3] X_20885151_SNP [dm6]	G	T	2.072e^-4	0.921	INTRON shakB
3R	4160992	3R_4160992_SNP [dm3] 3R_8335270_SNP [dm6]	T	A	2.085e^-4	0.921	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	19705400	3R_19705400_SNP [dm3] 3R_23879678_SNP [dm6]	G	A	2.099e^-4	0.921	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13880694	3R_13880694_SNP [dm3] 3R_18054972_SNP [dm6]	A	G	2.104e^-4	0.921	INTERGENIC
3R	20336238	3R_20336238_SNP [dm3] 3R_24510516_SNP [dm6]	A	G	2.121e^-4	0.921	INTRON nAChRbeta2
X	16147923	X_16147923_SNP [dm3] X_16253890_SNP [dm6]	A	G	2.127e^-4	0.921	UPSTREAM snRNA:U2:14B DOWNSTREAM snRNA:U5:14B INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16493247	3R_16493247_SNP [dm3] 3R_20667525_SNP [dm6]	T	A	2.128e^-4	0.921	INTERGENIC
2L	14770445	2L_14770445_SNP [dm3] 2L_14770445_SNP [dm6]	C	T	2.129e^-4	0.921	INTERGENIC
2L	6642666	2L_6642666_SNP [dm3] 2L_6642666_SNP [dm6]	A	G	2.135e^-4	0.921	INTRON CG31635
3R	24989104	3R_24989104_SNP [dm3] 3R_29163382_SNP [dm6]	A	G	2.135e^-4	0.921	SYNONYMOUS_CODING CG11897
2R	18162078	2R_18162078_SNP [dm3] 2R_22274573_SNP [dm6]	G	C	2.146e^-4	0.921	INTRON dve
2R	19347062	2R_19347062_SNP [dm3] 2R_23459539_SNP [dm6]	G	T	2.150e^-4	0.921	UPSTREAM skpF INTRON CG43795
3L	4638403	3L_4638403_SNP [dm3] 3L_4638403_SNP [dm6]	C	G	2.175e^-4	0.921	INTRON axo
2R	19347067	2R_19347067_SNP [dm3] 2R_23459544_SNP [dm6]	A	T	2.186e^-4	0.921	UPSTREAM skpF INTRON CG43795
X	16131469	X_16131469_SNP [dm3] X_16237436_SNP [dm6]	G	T	2.204e^-4	0.921	INTERGENIC
2R	17663134	2R_17663134_SNP [dm3] 2R_21775629_SNP [dm6]	T	A	2.208e^-4	0.921	DOWNSTREAM CG4021 INTERGENIC
X	17125781	X_17125781_SNP [dm3] X_17231748_SNP [dm6]	A	T	2.227e^-4	0.921	UPSTREAM CG10597 INTERGENIC
2R	4505755	2R_4505755_SNP [dm3] 2R_8618250_SNP [dm6]	T	G	2.235e^-4	0.921	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11000128	2R_11000128_SNP [dm3] 2R_15112623_SNP [dm6]	T	G	2.238e^-4	0.921	INTERGENIC
2L	15034904	2L_15034904_SNP [dm3] 2L_15034904_SNP [dm6]	A	C	2.238e^-4	0.921	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
3R	26811460	3R_26811460_SNP [dm3] 3R_30985738_SNP [dm6]	G	A	2.255e^-4	0.921	INTRON 5-HT7
4	960207	4_960207_SNP [dm3] 4_939581_SNP [dm6]	G	A	2.256e^-4	0.921	INTRON mGluR
2L	8876722	2L_8876722_INS [dm3] 2L_8876722_INS [dm6]	C	CT	2.262e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	13427294	2L_13427294_SNP [dm3] 2L_13427294_SNP [dm6]	C	T	2.262e^-4	0.921	INTRON CG42784
3R	10208631	3R_10208631_SNP [dm3] 3R_14382909_SNP [dm6]	T	C	2.269e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	5860495	2R_5860495_DEL [dm3] 2R_9972990_DEL [dm6]	CA	C	2.270e^-4	0.921	DOWNSTREAM CG12134 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15989703	3L_15989703_SNP [dm3] 3L_15996603_SNP [dm6]	G	A	2.287e^-4	0.921	INTRON CG5830
3L	3325044	3L_3325044_SNP [dm3] 3L_3325044_SNP [dm6]	T	C	2.297e^-4	0.921	SYNONYMOUS_CODING CG11526	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3325052	3L_3325052_SNP [dm3] 3L_3325052_SNP [dm6]	C	T	2.297e^-4	0.921	NON_SYNONYMOUS_CODING CG11526	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15398422	3R_15398422_SNP [dm3] 3R_19572700_SNP [dm6]	A	G	2.308e^-4	0.921	INTRON Dys
3R	15398434	3R_15398434_SNP [dm3] 3R_19572712_SNP [dm6]	G	A	2.308e^-4	0.921	INTRON Dys
2R	17342163	2R_17342163_SNP [dm3] 2R_21454658_SNP [dm6]	C	A	2.311e^-4	0.921	INTRON Sdc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12109322	2R_12109322_SNP [dm3] 2R_16221817_SNP [dm6]	T	C	2.320e^-4	0.921	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	19906039	X_19906039_SNP [dm3] X_20012006_SNP [dm6]	C	T	2.328e^-4	0.921	INTRON Dop2R
2L	2460327	2L_2460327_SNP [dm3] 2L_2460327_SNP [dm6]	G	C	2.328e^-4	0.921	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	21926351	3L_21926351_SNP [dm3] 3L_21933251_SNP [dm6]	C	T	2.328e^-4	0.921	DOWNSTREAM mub INTERGENIC
3R	20843912	3R_20843912_SNP [dm3] 3R_25018190_SNP [dm6]	G	T	2.329e^-4	0.921	SYNONYMOUS_CODING tnc
3L	1734781	3L_1734781_SNP [dm3] 3L_1734781_SNP [dm6]	T	G	2.342e^-4	0.921	SYNONYMOUS_CODING Oseg4	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1961206	2L_1961206_SNP [dm3] 2L_1961206_SNP [dm6]	A	G	2.348e^-4	0.921	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22956029	3R_22956029_SNP [dm3] 3R_27130307_SNP [dm6]	A	G	2.349e^-4	0.921	INTRON CG6051
3R	22956105	3R_22956105_SNP [dm3] 3R_27130383_SNP [dm6]	T	A	2.349e^-4	0.921	INTRON CG6051
3R	17373433	3R_17373433_SNP [dm3] 3R_21547711_SNP [dm6]	C	T	2.356e^-4	0.921	DOWNSTREAM slou INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	9423366	2R_9423366_SNP [dm3] 2R_13535861_SNP [dm6]	C	T	2.357e^-4	0.921	DOWNSTREAM tRNA:K2:50C INTERGENIC
2R	9474770	2R_9474770_SNP [dm3] 2R_13587265_SNP [dm6]	G	A	2.362e^-4	0.921	INTRON CG6191 & 1 other
2R	10999874	2R_10999874_SNP [dm3] 2R_15112369_SNP [dm6]	T	G	2.376e^-4	0.921	INTERGENIC
2R	11000042	2R_11000042_SNP [dm3] 2R_15112537_SNP [dm6]	C	T	2.376e^-4	0.921	INTERGENIC
2L	8682046	2L_8682046_SNP [dm3] 2L_8682046_SNP [dm6]	G	T	2.378e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
3L	5407634	3L_5407634_SNP [dm3] 3L_5414534_SNP [dm6]	A	G	2.380e^-4	0.921	INTERGENIC
3R	15795446	3R_15795446_SNP [dm3] 3R_19969724_SNP [dm6]	T	G	2.383e^-4	0.921	INTRON Hs6st
3R	13775379	3R_13775379_SNP [dm3] 3R_17949657_SNP [dm6]	T	A	2.387e^-4	0.921	INTRON cpo	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	9421908	2R_9421908_DEL [dm3] 2R_13534403_DEL [dm6]	CATCCGCAACGAACTGAA...	C	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9421977	2R_9421977_SNP [dm3] 2R_13534472_SNP [dm6]	A	C	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422039	2R_9422039_SNP [dm3] 2R_13534534_SNP [dm6]	T	C	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422047	2R_9422047_SNP [dm3] 2R_13534542_SNP [dm6]	G	C	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422136	2R_9422136_SNP [dm3] 2R_13534631_SNP [dm6]	A	G	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422152	2R_9422152_SNP [dm3] 2R_13534647_SNP [dm6]	A	G	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422248	2R_9422248_SNP [dm3] 2R_13534743_SNP [dm6]	T	G	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC
2R	9422308	2R_9422308_SNP [dm3] 2R_13534803_SNP [dm6]	G	A	2.396e^-4	0.921	UPSTREAM Vmat INTERGENIC
2R	18162116	2R_18162116_SNP [dm3] 2R_22274611_SNP [dm6]	C	A	2.418e^-4	0.921	INTRON dve
2L	10227647	2L_10227647_SNP [dm3] 2L_10227647_SNP [dm6]	G	A	2.418e^-4	0.921	UPSTREAM CG5708 DOWNSTREAM CG5694 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	7383848	3R_7383848_SNP [dm3] 3R_11558126_SNP [dm6]	A	G	2.425e^-4	0.921	UTR_5_PRIME CG10898	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9327294	X_9327294_SNP [dm3] X_9433261_SNP [dm6]	C	T	2.435e^-4	0.921	INTRON mgl
3R	19108722	3R_19108722_SNP [dm3] 3R_23283000_SNP [dm6]	C	T	2.436e^-4	0.921	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA
3L	2604952	3L_2604952_DEL [dm3] 3L_2604952_DEL [dm6]	CC	C	2.438e^-4	0.921	INTRON Pxn	TF binding site mE1_TFBS_chinmo
X	21232964	X_21232964_SNP [dm3] X_21361937_SNP [dm6]	G	A	2.438e^-4	0.921	DOWNSTREAM Sep1 INTERGENIC
3R	18776271	3R_18776271_SNP [dm3] 3R_22950549_SNP [dm6]	A	G	2.444e^-4	0.921	INTRON klg
3R	18776272	3R_18776272_SNP [dm3] 3R_22950550_SNP [dm6]	A	C	2.444e^-4	0.921	INTRON klg
3R	18776276	3R_18776276_SNP [dm3] 3R_22950554_SNP [dm6]	C	T	2.444e^-4	0.921	INTRON klg
3R	17356260	3R_17356260_SNP [dm3] 3R_21530538_SNP [dm6]	A	T	2.451e^-4	0.921	DOWNSTREAM CR43372 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13994895	2L_13994895_SNP [dm3] 2L_13994895_SNP [dm6]	G	C	2.452e^-4	0.921	INTRON rk
2L	13994929	2L_13994929_SNP [dm3] 2L_13994929_SNP [dm6]	C	T	2.452e^-4	0.921	INTRON rk
2L	13994946	2L_13994946_SNP [dm3] 2L_13994946_SNP [dm6]	A	T	2.452e^-4	0.921	INTRON rk
3R	17661277	3R_17661277_SNP [dm3] 3R_21835555_SNP [dm6]	C	T	2.458e^-4	0.921	INTERGENIC
X	4813855	X_4813855_SNP [dm3] X_4919822_SNP [dm6]	C	A	2.462e^-4	0.921	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4813882	X_4813882_SNP [dm3] X_4919849_SNP [dm6]	A	C	2.462e^-4	0.921	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23571991	3R_23571991_SNP [dm3] 3R_27746269_SNP [dm6]	C	T	2.464e^-4	0.921	INTRON Ets98B	TF binding site mE1_TFBS_chinmo
2L	19905324	2L_19905324_SNP [dm3] 2L_19905324_SNP [dm6]	A	T	2.467e^-4	0.921	INTRON sick
2L	638783	2L_638783_SNP [dm3] 2L_638783_SNP [dm6]	A	C	2.469e^-4	0.921	INTERGENIC
3R	26808912	3R_26808912_SNP [dm3] 3R_30983190_SNP [dm6]	C	A	2.477e^-4	0.921	INTRON 5-HT7	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	4241034	2R_4241034_SNP [dm3] 2R_8353529_SNP [dm6]	T	C	2.480e^-4	0.921	INTRON pdm3
2L	1365670	2L_1365670_SNP [dm3] 2L_1365670_SNP [dm6]	A	C	2.488e^-4	0.921	INTERGENIC
X	17125766	X_17125766_SNP [dm3] X_17231733_SNP [dm6]	G	A	2.489e^-4	0.921	UPSTREAM CG10597 INTERGENIC
X	20431146	X_20431146_SNP [dm3] X_20560119_SNP [dm6]	A	G	2.500e^-4	0.921	INTRON RunxB	TF binding site BDTNP1_TFBS_da
3R	14147814	3R_14147814_SNP [dm3] 3R_18322092_SNP [dm6]	T	A	2.509e^-4	0.921	INTRON CG31235
2R	1076394	2R_1076394_SNP [dm3] 2R_5188889_SNP [dm6]	T	C	2.535e^-4	0.921	INTRON Nipped-A
3L	2116627	3L_2116627_SNP [dm3] 3L_2116627_SNP [dm6]	A	C	2.539e^-4	0.921	DOWNSTREAM zormin INTERGENIC
3R	24904437	3R_24904437_SNP [dm3] 3R_29078715_SNP [dm6]	T	A	2.545e^-4	0.921	INTRON CG11873
2L	1034799	2L_1034799_SNP [dm3] 2L_1034799_SNP [dm6]	A	G	2.556e^-4	0.921	UPSTREAM IA-2 INTRON IA-2
3L	2665776	3L_2665776_SNP [dm3] 3L_2665776_SNP [dm6]	T	C	2.580e^-4	0.921	INTRON Fife
2L	14770334	2L_14770334_SNP [dm3] 2L_14770334_SNP [dm6]	C	T	2.584e^-4	0.921	INTERGENIC
2R	9422022	2R_9422022_DEL [dm3] 2R_13534517_DEL [dm6]	AA	A	2.594e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	8682036	2L_8682036_SNP [dm3] 2L_8682036_SNP [dm6]	G	A	2.597e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
2R	17718205	2R_17718205_SNP [dm3] 2R_21830700_SNP [dm6]	C	A	2.599e^-4	0.921	INTRON CG13492
2R	13978508	2R_13978508_SNP [dm3] 2R_18091003_SNP [dm6]	A	T	2.604e^-4	0.921	INTRON CG34386	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_hb
3R	10207932	3R_10207932_SNP [dm3] 3R_14382210_SNP [dm6]	C	T	2.612e^-4	0.921	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	12808299	3R_12808299_SNP [dm3] 3R_16982577_SNP [dm6]	A	G	2.627e^-4	0.921	UPSTREAM Ahcy89E DOWNSTREAM CG18622 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17717992	2R_17717992_INS [dm3] 2R_21830487_INS [dm6]	A	AAATATATTATCAATGTATT...	2.628e^-4	0.921	INTRON CG13492
4	920474	4_920474_SNP [dm3] 4_899848_SNP [dm6]	T	C	2.641e^-4	0.921	SYNONYMOUS_CODING unc-13
3R	1443943	3R_1443943_SNP [dm3] 3R_5618221_SNP [dm6]	G	A	2.647e^-4	0.921	INTRON Spec2
X	12438069	X_12438069_SNP [dm3] X_12544036_SNP [dm6]	T	A	2.660e^-4	0.921	INTRON CG43921
3L	6293666	3L_6293666_SNP [dm3] 3L_6300566_SNP [dm6]	T	G	2.669e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15718663	3R_15718663_SNP [dm3] 3R_19892941_SNP [dm6]	A	T	2.676e^-4	0.921	NON_SYNONYMOUS_CODING CG4733	TF binding site mE1_TFBS_cad
3L	13719013	3L_13719013_SNP [dm3] 3L_13725913_SNP [dm6]	A	T	2.676e^-4	0.921	INTRON bru-3	TF binding site mE1_TFBS_chinmo
3R	1147676	3R_1147676_SNP [dm3] 3R_5321954_SNP [dm6]	G	C	2.678e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	16680182	3R_16680182_SNP [dm3] 3R_20854460_SNP [dm6]	A	G	2.684e^-4	0.921	INTRON Ir93a
2R	7532526	2R_7532526_SNP [dm3] 2R_11645021_SNP [dm6]	T	A	2.691e^-4	0.921	INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	11128912	3L_11128912_SNP [dm3] 3L_11135812_SNP [dm6]	A	G	2.699e^-4	0.921	UPSTREAM CG32082 DOWNSTREAM CG14143 INTERGENIC
3L	18848251	3L_18848251_SNP [dm3] 3L_18855151_SNP [dm6]	A	C	2.708e^-4	0.921	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16482888	3L_16482888_SNP [dm3] 3L_16489788_SNP [dm6]	C	T	2.724e^-4	0.921	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	6608991	3L_6608991_SNP [dm3] 3L_6615891_SNP [dm6]	A	T	2.740e^-4	0.921	SPLICE_SITE_REGION CG8398 INTRON CG8398	TF binding site mE1_TFBS_cad
3R	12860093	3R_12860093_DEL [dm3] 3R_17034371_DEL [dm6]	TGATCT	A	2.742e^-4	0.921	DOWNSTREAM CG31268 INTRON CG4009	TF binding site mE1_TFBS_HSA
2L	9022199	2L_9022199_SNP [dm3] 2L_9022199_SNP [dm6]	T	C	2.744e^-4	0.921	INTERGENIC
2R	6828160	2R_6828160_SNP [dm3] 2R_10940655_SNP [dm6]	A	T	2.749e^-4	0.921	SPLICE_SITE_REGION Spn47C INTRON Spn47C
2L	3231514	2L_3231514_SNP [dm3] 2L_3231514_SNP [dm6]	G	A	2.752e^-4	0.921	INTERGENIC
3R	22363568	3R_22363568_SNP [dm3] 3R_26537846_SNP [dm6]	A	T	2.753e^-4	0.921	INTRON scrib	TF binding site BDTNP1_TFBS_dl
3R	22363877	3R_22363877_SNP [dm3] 3R_26538155_SNP [dm6]	T	A	2.753e^-4	0.921	INTRON scrib
3R	22363878	3R_22363878_SNP [dm3] 3R_26538156_SNP [dm6]	T	G	2.753e^-4	0.921	INTRON scrib
2L	2507986	2L_2507986_SNP [dm3] 2L_2507986_SNP [dm6]	A	G	2.757e^-4	0.921	UPSTREAM CR44607 INTERGENIC
2L	3251470	2L_3251470_SNP [dm3] 2L_3251470_SNP [dm6]	T	G	2.770e^-4	0.921	INTERGENIC
3R	26725543	3R_26725543_INS [dm3] 3R_30899821_INS [dm6]	T	TT	2.786e^-4	0.921	DOWNSTREAM CG33483 INTRON Cyp4c3
2L	19226230	2L_19226230_DEL [dm3] 2L_19226230_DEL [dm6]	GGGAGGTGG	G	2.791e^-4	0.921	INTERGENIC
2L	14770468	2L_14770468_SNP [dm3] 2L_14770468_SNP [dm6]	T	G	2.795e^-4	0.921	INTERGENIC
2R	5858411	2R_5858411_SNP [dm3] 2R_9970906_SNP [dm6]	G	A	2.802e^-4	0.921	UPSTREAM CG12134 DOWNSTREAM Adam INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	5860276	2R_5860276_SNP [dm3] 2R_9972771_SNP [dm6]	T	C	2.802e^-4	0.921	UTR_3_PRIME CG12134	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
X	7662795	X_7662795_SNP [dm3] X_7768762_SNP [dm6]	G	A	2.806e^-4	0.921	UTR_5_PRIME CG34338	TF binding site mE1_TFBS_HSA
3R	7353683	3R_7353683_SNP [dm3] 3R_11527961_SNP [dm6]	C	A	2.811e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	14733188	X_14733188_SNP [dm3] X_14839155_SNP [dm6]	C	A	2.816e^-4	0.921	UPSTREAM CG14407 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn
3L	16199327	3L_16199327_SNP [dm3] 3L_16206227_SNP [dm6]	A	C	2.825e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6792358	2R_6792358_SNP [dm3] 2R_10904853_SNP [dm6]	C	T	2.827e^-4	0.921	SYNONYMOUS_CODING CG12943 UTR_3_PRIME CG12943
2L	19799196	2L_19799196_SNP [dm3] 2L_19799196_SNP [dm6]	G	A	2.829e^-4	0.921	INTRON sick
3R	7371041	3R_7371041_SNP [dm3] 3R_11545319_SNP [dm6]	C	A	2.833e^-4	0.921	INTERGENIC
3R	26859482	3R_26859482_SNP [dm3] 3R_31033760_SNP [dm6]	G	A	2.834e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	8785031	X_8785031_SNP [dm3] X_8890998_SNP [dm6]	G	T	2.840e^-4	0.921	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	8785077	X_8785077_SNP [dm3] X_8891044_SNP [dm6]	A	G	2.840e^-4	0.921	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8785138	X_8785138_SNP [dm3] X_8891105_SNP [dm6]	T	A	2.840e^-4	0.921	INTRON Moe	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8785157	X_8785157_SNP [dm3] X_8891124_SNP [dm6]	C	T	2.840e^-4	0.921	INTRON Moe	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6379288	2L_6379288_SNP [dm3] 2L_6379288_SNP [dm6]	T	G	2.855e^-4	0.921	SPLICE_SITE_REGION CG42368 INTRON CG42368
2L	16493569	2L_16493569_SNP [dm3] 2L_16493569_SNP [dm6]	G	A	2.856e^-4	0.921	INTRON Tpr2	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	20001121	3R_20001121_SNP [dm3] 3R_24175399_SNP [dm6]	T	C	2.870e^-4	0.921	INTRON CG13606
3L	12462754	3L_12462754_INS [dm3] 3L_12469654_INS [dm6]	C	CCCC	2.894e^-4	0.921	INTRON CG32102	TF binding site mE1_TFBS_sens
3R	25301278	3R_25301278_SNP [dm3] 3R_29475556_SNP [dm6]	C	T	2.895e^-4	0.921	INTRON Ptp99A
3R	14147804	3R_14147804_SNP [dm3] 3R_18322082_SNP [dm6]	T	A	2.914e^-4	0.921	INTRON CG31235
3R	18609816	3R_18609816_SNP [dm3] 3R_22784094_SNP [dm6]	T	C	2.948e^-4	0.921	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	14212069	3R_14212069_SNP [dm3] 3R_18386347_SNP [dm6]	G	T	2.952e^-4	0.921	NON_SYNONYMOUS_CODING cona DOWNSTREAM Vha100-4
3R	10301155	3R_10301155_SNP [dm3] 3R_14475433_SNP [dm6]	A	G	2.973e^-4	0.921	INTRON cv-c
2L	10349523	2L_10349523_SNP [dm3] 2L_10349523_SNP [dm6]	G	A	2.979e^-4	0.921	INTRON CG34367
X	5249465	X_5249465_SNP [dm3] X_5355432_SNP [dm6]	A	T	2.988e^-4	0.921	INTRON SK
3R	7381054	3R_7381054_SNP [dm3] 3R_11555332_SNP [dm6]	A	G	2.999e^-4	0.921	DOWNSTREAM CG14708 INTERGENIC
3L	9433527	3L_9433527_SNP [dm3] 3L_9440427_SNP [dm6]	A	C	3.018e^-4	0.921	UTR_3_PRIME Nf-YA DOWNSTREAM MTF-1 INTRON Bet3
2R	17903966	2R_17903966_SNP [dm3] 2R_22016461_SNP [dm6]	T	G	3.019e^-4	0.921	INTRON CG34370
3R	26262786	3R_26262786_SNP [dm3] 3R_30437064_SNP [dm6]	C	T	3.021e^-4	0.921	INTRON CG15537
X	6362450	X_6362450_SNP [dm3] X_6468417_SNP [dm6]	G	A	3.025e^-4	0.921	SYNONYMOUS_CODING CG42340	TF binding site mE1_TFBS_chinmo
3L	11485602	3L_11485602_SNP [dm3] 3L_11492502_SNP [dm6]	G	T	3.031e^-4	0.921	INTRON chrb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
4	904654	4_904654_SNP [dm3] 4_884028_SNP [dm6]	T	C	3.040e^-4	0.921	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi
X	14732530	X_14732530_SNP [dm3] X_14838497_SNP [dm6]	A	G	3.043e^-4	0.921	SYNONYMOUS_CODING CG32590 UPSTREAM CG14407 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13687114	3L_13687114_SNP [dm3] 3L_13694014_SNP [dm6]	C	T	3.045e^-4	0.921	INTRON bru-3
3R	7664432	3R_7664432_SNP [dm3] 3R_11838710_SNP [dm6]	C	T	3.048e^-4	0.921	INTRON CG6959
3R	19705281	3R_19705281_SNP [dm3] 3R_23879559_SNP [dm6]	C	T	3.048e^-4	0.921	INTRON Pli	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	15213887	2L_15213887_SNP [dm3] 2L_15213887_SNP [dm6]	A	C	3.064e^-4	0.921	INTERGENIC
3R	13659593	3R_13659593_DEL [dm3] 3R_17833871_DEL [dm6]	TTT	T	3.070e^-4	0.921	INTRON tinc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	1343566	2R_1343566_SNP [dm3] 2R_5456061_SNP [dm6]	T	G	3.075e^-4	0.921	UTR_3_PRIME laccase2
2R	18737385	2R_18737385_SNP [dm3] 2R_22849862_SNP [dm6]	T	C	3.075e^-4	0.921	NON_SYNONYMOUS_CODING CG13531	TF binding site mE1_TFBS_cad
3L	16546135	3L_16546135_SNP [dm3] 3L_16553035_SNP [dm6]	G	A	3.096e^-4	0.921	INTERGENIC
2L	725179	2L_725179_SNP [dm3] 2L_725179_SNP [dm6]	T	G	3.096e^-4	0.921	INTERGENIC
2L	21007404	2L_21007404_SNP [dm3] 2L_21007404_SNP [dm6]	T	C	3.098e^-4	0.921	INTRON CG42238
X	12439875	X_12439875_SNP [dm3] X_12545842_SNP [dm6]	C	A	3.101e^-4	0.921	INTRON CG43921	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25656227	3R_25656227_SNP [dm3] 3R_29830505_SNP [dm6]	A	G	3.112e^-4	0.921	INTRON Atg16
2L	638791	2L_638791_SNP [dm3] 2L_638791_SNP [dm6]	T	C	3.128e^-4	0.921	INTERGENIC
2R	18394270	2R_18394270_SNP [dm3] 2R_22506765_SNP [dm6]	G	T	3.135e^-4	0.921	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D
2L	11654058	2L_11654058_SNP [dm3] 2L_11654058_SNP [dm6]	A	G	3.155e^-4	0.921	UTR_3_PRIME CG4983 DOWNSTREAM CG4983
2R	10999900	2R_10999900_SNP [dm3] 2R_15112395_SNP [dm6]	A	G	3.168e^-4	0.921	INTERGENIC
3L	19282500	3L_19282500_SNP [dm3] 3L_19289400_SNP [dm6]	C	G	3.184e^-4	0.921	UPSTREAM Gbs-76A INTRON Gbs-76A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	4929203	2L_4929203_SNP [dm3] 2L_4929203_SNP [dm6]	G	A	3.199e^-4	0.921	UPSTREAM hoe1 INTRON hoe1
3R	15780795	3R_15780795_SNP [dm3] 3R_19955073_SNP [dm6]	T	G	3.205e^-4	0.921	INTRON Hs6st
X	17125761	X_17125761_SNP [dm3] X_17231728_SNP [dm6]	T	A	3.221e^-4	0.921	UPSTREAM CG10597 INTERGENIC
X	18986934	X_18986934_SNP [dm3] X_19092901_SNP [dm6]	C	T	3.231e^-4	0.921	INTERGENIC
2R	7882689	2R_7882689_SNP [dm3] 2R_11995184_SNP [dm6]	A	G	3.237e^-4	0.921	EXON CR45319 & 1 other
3L	5302903	3L_5302903_SNP [dm3] 3L_5309803_SNP [dm6]	C	T	3.243e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	20264686	2L_20264686_SNP [dm3] 2L_20264686_SNP [dm6]	T	C	3.252e^-4	0.921	UPSTREAM CG17570 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	19679138	2L_19679138_SNP [dm3] 2L_19679138_SNP [dm6]	G	T	3.274e^-4	0.921	INTRON Lar
3L	2595519	3L_2595519_SNP [dm3] 3L_2595519_SNP [dm6]	A	T	3.280e^-4	0.921	UTR_3_PRIME dos UPSTREAM CG16984 DOWNSTREAM CG12182
X	16640464	X_16640464_SNP [dm3] X_16746431_SNP [dm6]	T	G	3.280e^-4	0.921	UPSTREAM CG9634 INTRON CG9634
2R	17408631	2R_17408631_SNP [dm3] 2R_21521126_SNP [dm6]	C	G	3.298e^-4	0.921	UPSTREAM CG30288 INTRON CG30289
X	4813890	X_4813890_SNP [dm3] X_4919857_SNP [dm6]	A	G	3.306e^-4	0.921	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	22242071	2L_22242071_INS [dm3] 2L_22242071_INS [dm6]	A	AAATGAAATTTC...	3.312e^-4	0.921	UTR_3_PRIME CG3262	transposable element FlyBase
2R	18138943	2R_18138943_SNP [dm3] 2R_22251438_SNP [dm6]	T	A	3.314e^-4	0.921	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	16195382	2L_16195382_SNP [dm3] 2L_16195382_SNP [dm6]	T	A	3.325e^-4	0.921	UPSTREAM CR44734 DOWNSTREAM CR44735 INTERGENIC
X	14787007	X_14787007_SNP [dm3] X_14892974_SNP [dm6]	T	A	3.335e^-4	0.921	INTRON Flo2 & 1 other
3L	15266446	3L_15266446_SNP [dm3] 3L_15273346_SNP [dm6]	C	A	3.336e^-4	0.921	INTERGENIC
2R	17253332	2R_17253332_DEL [dm3] 2R_21365827_DEL [dm6]	ACACAAACTTATTTAAAAAT...	A	3.362e^-4	0.921	INTRON cv-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	8041238	2L_8041238_SNP [dm3] 2L_8041238_SNP [dm6]	A	T	3.365e^-4	0.921	DOWNSTREAM Cka & 2 others INTRON CG7429
2R	14535763	2R_14535763_SNP [dm3] 2R_18648258_SNP [dm6]	C	G	3.378e^-4	0.921	INTRON SP2637	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	7379196	3R_7379196_INS [dm3] 3R_11553474_INS [dm6]	T	TAGCCACT	3.388e^-4	0.921	UPSTREAM CG14708 INTERGENIC
2L	541972	2L_541972_SNP [dm3] 2L_541972_SNP [dm6]	A	G	3.389e^-4	0.921	SYNONYMOUS_CODING lwr DOWNSTREAM Spp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	9990852	2L_9990852_SNP [dm3] 2L_9990852_SNP [dm6]	A	G	3.402e^-4	0.921	INTRON bib	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	1961694	2L_1961694_SNP [dm3] 2L_1961694_SNP [dm6]	A	C	3.410e^-4	0.921	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5618318	3L_5618318_SNP [dm3] 3L_5625218_SNP [dm6]	T	G	3.420e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14416530	3L_14416530_SNP [dm3] 3L_14423430_SNP [dm6]	G	T	3.427e^-4	0.921	INTRON bbg	TF binding site mE1_TFBS_HSA
2R	1696192	2R_1696192_DEL [dm3] 2R_5808687_DEL [dm6]	GG	G	3.440e^-4	0.921	INTRON dpr12	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3R	7470010	3R_7470010_SNP [dm3] 3R_11644288_SNP [dm6]	A	T	3.449e^-4	0.921	INTRON Csk
3R	7470011	3R_7470011_SNP [dm3] 3R_11644289_SNP [dm6]	T	C	3.449e^-4	0.921	INTRON Csk
3R	19108664	3R_19108664_SNP [dm3] 3R_23282942_SNP [dm6]	T	C	3.456e^-4	0.921	SYNONYMOUS_CODING Cdc16	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7276162	3L_7276162_SNP [dm3] 3L_7283062_SNP [dm6]	G	A	3.460e^-4	0.921	INTRON unc-13-4A
2R	17609275	2R_17609275_SNP [dm3] 2R_21721770_SNP [dm6]	T	A	3.471e^-4	0.921	INTRON LBR	TF binding site mE1_TFBS_cad
3L	3688781	3L_3688781_SNP [dm3] 3L_3688781_SNP [dm6]	A	T	3.477e^-4	0.921	UPSTREAM CR43484 INTERGENIC
3L	15750092	3L_15750092_SNP [dm3] 3L_15756992_SNP [dm6]	A	G	3.482e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20310851	3R_20310851_SNP [dm3] 3R_24485129_SNP [dm6]	G	C	3.498e^-4	0.921	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	1076607	2R_1076607_SNP [dm3] 2R_5189102_SNP [dm6]	T	G	3.504e^-4	0.921	INTRON Nipped-A	transposable element FlyBase
X	8427461	X_8427461_DEL [dm3] X_8533428_DEL [dm6]	GATG	G	3.509e^-4	0.921	INTRON Nrg	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20613307	3R_20613307_DEL [dm3] 3R_24787585_DEL [dm6]	TCAAGCCAATTTGGATATCC...	T	3.514e^-4	0.921	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	20613345	3R_20613345_SNP [dm3] 3R_24787623_SNP [dm6]	T	A	3.514e^-4	0.921	UPSTREAM CG5805 & 1 other DOWNSTREAM CG13634 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9422144	2R_9422144_SNP [dm3] 2R_13534639_SNP [dm6]	G	A	3.515e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	12891682	X_12891682_SNP [dm3] X_12997649_SNP [dm6]	C	T	3.539e^-4	0.921	INTRON rad
X	13062721	X_13062721_SNP [dm3] X_13168688_SNP [dm6]	A	G	3.541e^-4	0.921	INTRON CG34411
X	8835898	X_8835898_SNP [dm3] X_8941865_SNP [dm6]	C	A	3.565e^-4	0.921	INTRON rdgA
2L	18992748	2L_18992748_SNP [dm3] 2L_18992748_SNP [dm6]	G	C	3.565e^-4	0.921	DOWNSTREAM CG10650 & 1 other INTERGENIC	TF binding site mE1_TFBS_inv
X	20818169	X_20818169_SNP [dm3] X_20947142_SNP [dm6]	G	A	3.574e^-4	0.921	INTERGENIC
2R	11000008	2R_11000008_SNP [dm3] 2R_15112503_SNP [dm6]	G	T	3.585e^-4	0.921	INTERGENIC
X	8006958	X_8006958_SNP [dm3] X_8112925_SNP [dm6]	C	T	3.588e^-4	0.921	INTRON Gclc
3L	18848250	3L_18848250_SNP [dm3] 3L_18855150_SNP [dm6]	G	A	3.589e^-4	0.921	DOWNSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9458027	2R_9458027_SNP [dm3] 2R_13570522_SNP [dm6]	C	T	3.603e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	5125729	2L_5125729_SNP [dm3] 2L_5125729_SNP [dm6]	G	A	3.605e^-4	0.921	INTRON Msp300	TF binding site mE1_TFBS_cad
X	2680503	X_2680503_SNP [dm3] X_2786470_SNP [dm6]	A	C	3.633e^-4	0.921	INTRON kirre & 1 other
X	2680534	X_2680534_SNP [dm3] X_2786501_SNP [dm6]	C	T	3.633e^-4	0.921	INTRON kirre & 1 other
2L	13259759	2L_13259759_SNP [dm3] 2L_13259759_SNP [dm6]	A	T	3.640e^-4	0.921	UPSTREAM CG31730 INTERGENIC
3L	1495982	3L_1495982_SNP [dm3] 3L_1495982_SNP [dm6]	G	T	3.654e^-4	0.921	DOWNSTREAM pUf68 INTRON CG12084	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	1124379	3R_1124379_SNP [dm3] 3R_5298657_SNP [dm6]	A	G	3.666e^-4	0.921	NON_SYNONYMOUS_CODING mtd INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_zfh1
2R	20092443	2R_20092443_SNP [dm3] 2R_24204920_SNP [dm6]	A	C	3.674e^-4	0.921	UTR_3_PRIME CG11406 INTRON CG11406
3R	25236117	3R_25236117_SNP [dm3] 3R_29410395_SNP [dm6]	G	T	3.680e^-4	0.921	INTRON Ptp99A
2R	9422038	2R_9422038_SNP [dm3] 2R_13534533_SNP [dm6]	G	C	3.686e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	3062334	2L_3062334_SNP [dm3] 2L_3062334_SNP [dm6]	A	G	3.699e^-4	0.921	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1277439	2L_1277439_SNP [dm3] 2L_1277439_SNP [dm6]	A	G	3.703e^-4	0.921	INTRON robo3
2L	15159286	2L_15159286_SNP [dm3] 2L_15159286_SNP [dm6]	G	A	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159289	2L_15159289_SNP [dm3] 2L_15159289_SNP [dm6]	A	G	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159290	2L_15159290_SNP [dm3] 2L_15159290_SNP [dm6]	A	C	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159306	2L_15159306_INS [dm3] 2L_15159306_INS [dm6]	A	AAA	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159311	2L_15159311_SNP [dm3] 2L_15159311_SNP [dm6]	C	T	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159322	2L_15159322_SNP [dm3] 2L_15159322_SNP [dm6]	T	C	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159324	2L_15159324_SNP [dm3] 2L_15159324_SNP [dm6]	C	T	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159326	2L_15159326_INS [dm3] 2L_15159326_INS [dm6]	C	TCGATCAATGCTGTAATATG...	3.710e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
3R	24205454	3R_24205454_SNP [dm3] 3R_28379732_SNP [dm6]	C	T	3.713e^-4	0.921	INTERGENIC
2L	5620659	2L_5620659_SNP [dm3] 2L_5620659_SNP [dm6]	A	C	3.717e^-4	0.921	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
2L	5620663	2L_5620663_DEL [dm3] 2L_5620663_DEL [dm6]	AATTT	A	3.717e^-4	0.921	UTR_3_PRIME Cyp6a16 UPSTREAM CR44796 DOWNSTREAM Cyp6a16
3L	6293685	3L_6293685_SNP [dm3] 3L_6300585_SNP [dm6]	A	G	3.732e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6293687	3L_6293687_SNP [dm3] 3L_6300587_SNP [dm6]	G	T	3.732e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12081687	3L_12081687_SNP [dm3] 3L_12088587_SNP [dm6]	T	G	3.742e^-4	0.921	UPSTREAM CG17154 INTERGENIC	TF binding site mE1_TFBS_inv
3L	19419903	3L_19419903_DEL [dm3] 3L_19426803_DEL [dm6]	CTGCACCCAAATCGGGCGGA...	C	3.744e^-4	0.921	INTERGENIC
3R	25058359	3R_25058359_SNP [dm3] 3R_29232637_SNP [dm6]	C	T	3.760e^-4	0.921	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad
3L	18031003	3L_18031003_SNP [dm3] 3L_18037903_SNP [dm6]	C	T	3.764e^-4	0.921	INTRON Eip75B
3L	2682181	3L_2682181_SNP [dm3] 3L_2682181_SNP [dm6]	C	T	3.774e^-4	0.921	INTRON Fife
2L	8802826	2L_8802826_SNP [dm3] 2L_8802826_SNP [dm6]	T	C	3.786e^-4	0.921	INTERGENIC
2L	19825453	2L_19825453_SNP [dm3] 2L_19825453_SNP [dm6]	G	A	3.793e^-4	0.921	INTRON sick
2R	19266113	2R_19266113_SNP [dm3] 2R_23378590_SNP [dm6]	C	T	3.803e^-4	0.921	UTR_5_PRIME yellow-d INTRON CG13551	TF binding site mE1_TFBS_cad
3L	12621913	3L_12621913_SNP [dm3] 3L_12628813_SNP [dm6]	G	A	3.813e^-4	0.921	INTRON CR32111
2R	19302739	2R_19302739_SNP [dm3] 2R_23415216_SNP [dm6]	C	T	3.821e^-4	0.921	UPSTREAM CG30411 INTRON CG9812
2L	19215148	2L_19215148_SNP [dm3] 2L_19215148_SNP [dm6]	C	T	3.823e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19515832	2R_19515832_SNP [dm3] 2R_23628309_SNP [dm6]	A	C	3.828e^-4	0.921	INTERGENIC
3L	7277565	3L_7277565_SNP [dm3] 3L_7284465_SNP [dm6]	C	T	3.828e^-4	0.921	INTRON unc-13-4A
X	8812708	X_8812708_SNP [dm3] X_8918675_SNP [dm6]	G	T	3.829e^-4	0.921	DOWNSTREAM CR44111 INTRON rdgA
3R	25290127	3R_25290127_SNP [dm3] 3R_29464405_SNP [dm6]	C	T	3.830e^-4	0.921	INTRON Ptp99A
3L	6905848	3L_6905848_SNP [dm3] 3L_6912748_SNP [dm6]	A	G	3.841e^-4	0.921	SYNONYMOUS_CODING Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	11903171	X_11903171_SNP [dm3] X_12009138_SNP [dm6]	G	A	3.843e^-4	0.921	SYNONYMOUS_CODING CG1806 DOWNSTREAM CG1492	TF binding site mE1_TFBS_sens
2R	5858668	2R_5858668_DEL [dm3] 2R_9971163_DEL [dm6]	AC	A	3.846e^-4	0.921	UTR_5_PRIME CG12134 DOWNSTREAM Adam	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
X	9002394	X_9002394_SNP [dm3] X_9108361_SNP [dm6]	T	C	3.854e^-4	0.921	UPSTREAM AP-1gamma DOWNSTREAM Arfrp1 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	15403208	2L_15403208_SNP [dm3] 2L_15403208_SNP [dm6]	T	A	3.871e^-4	0.921	INTERGENIC
3L	8304838	3L_8304838_SNP [dm3] 3L_8311738_SNP [dm6]	A	T	3.872e^-4	0.921	INTRON CG7185	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13669453	3L_13669453_SNP [dm3] 3L_13676353_SNP [dm6]	A	T	3.875e^-4	0.921	INTRON bru-3	TF binding site mE1_TFBS_chinmo
2L	16249523	2L_16249523_SNP [dm3] 2L_16249523_SNP [dm6]	T	C	3.876e^-4	0.921	UTR_5_PRIME PRL-1 INTRON PRL-1
X	3030403	X_3030403_INS [dm3] X_3136370_INS [dm6]	C	CCGATGAAAACA...	3.876e^-4	0.921	INTRON N	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2L	19905330	2L_19905330_DEL [dm3] 2L_19905330_DEL [dm6]	ATATTG	A	3.881e^-4	0.921	INTRON sick
2R	9422068	2R_9422068_SNP [dm3] 2R_13534563_SNP [dm6]	A	T	3.882e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	9422019	2R_9422019_SNP [dm3] 2R_13534514_SNP [dm6]	A	G	3.885e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	21876419	X_21876419_SNP [dm3] X_22474583_SNP [dm6]	A	C	3.885e^-4	0.921	DOWNSTREAM CG12576 INTRON CG14618	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	8716603	2R_8716603_SNP [dm3] 2R_12829098_SNP [dm6]	C	T	3.885e^-4	0.921	INTERGENIC
X	16922133	X_16922133_SNP [dm3] X_17028100_SNP [dm6]	G	A	3.887e^-4	0.921	INTRON CG45002
X	14826742	X_14826742_SNP [dm3] X_14932709_SNP [dm6]	A	T	3.890e^-4	0.921	UTR_3_PRIME Flo2 DOWNSTREAM Flo2 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10993276	2R_10993276_SNP [dm3] 2R_15105771_SNP [dm6]	A	G	3.893e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	20838866	3R_20838866_SNP [dm3] 3R_25013144_SNP [dm6]	A	G	3.903e^-4	0.921	SYNONYMOUS_CODING tnc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1051504	2L_1051504_SNP [dm3] 2L_1051504_SNP [dm6]	G	A	3.905e^-4	0.921	UTR_3_PRIME S DOWNSTREAM S
3L	2665779	3L_2665779_SNP [dm3] 3L_2665779_SNP [dm6]	G	T	3.914e^-4	0.921	INTRON Fife
2L	14004490	2L_14004490_SNP [dm3] 2L_14004490_SNP [dm6]	A	T	3.917e^-4	0.921	INTERGENIC
3R	22956030	3R_22956030_SNP [dm3] 3R_27130308_SNP [dm6]	T	A	3.919e^-4	0.921	INTRON CG6051
2R	6727416	2R_6727416_SNP [dm3] 2R_10839911_SNP [dm6]	G	A	3.925e^-4	0.921	SYNONYMOUS_CODING CG30015	TF binding site mE1_TFBS_cad
2L	12994982	2L_12994982_SNP [dm3] 2L_12994982_SNP [dm6]	A	T	3.925e^-4	0.921	INTRON CG12404
3L	6583647	3L_6583647_SNP [dm3] 3L_6590547_SNP [dm6]	A	T	3.925e^-4	0.921	INTRON CG18769
3L	6583655	3L_6583655_SNP [dm3] 3L_6590555_SNP [dm6]	C	A	3.925e^-4	0.921	INTRON CG18769
3R	13076310	3R_13076310_INS [dm3] 3R_17250588_INS [dm6]	C	CTG	3.927e^-4	0.921	INTRON beat-IIb
2L	8501845	2L_8501845_SNP [dm3] 2L_8501845_SNP [dm6]	G	A	3.938e^-4	0.921	INTRON Dh31
2L	8501850	2L_8501850_SNP [dm3] 2L_8501850_SNP [dm6]	A	G	3.938e^-4	0.921	INTRON Dh31
X	7665491	X_7665491_SNP [dm3] X_7771458_SNP [dm6]	A	G	3.943e^-4	0.921	INTERGENIC
X	20044399	X_20044399_SNP [dm3] X_20150366_SNP [dm6]	A	C	3.945e^-4	0.921	INTRON CG9572
X	20044401	X_20044401_SNP [dm3] X_20150368_SNP [dm6]	C	G	3.945e^-4	0.921	INTRON CG9572
3R	7383287	3R_7383287_SNP [dm3] 3R_11557565_SNP [dm6]	A	G	3.946e^-4	0.921	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
X	12673023	X_12673023_SNP [dm3] X_12778990_SNP [dm6]	A	T	3.956e^-4	0.921	INTRON CG32647
3R	12806155	3R_12806155_SNP [dm3] 3R_16980433_SNP [dm6]	A	T	3.962e^-4	0.921	INTRON Ahcy89E
3R	12806222	3R_12806222_SNP [dm3] 3R_16980500_SNP [dm6]	A	G	3.962e^-4	0.921	INTRON Ahcy89E
2R	11079728	2R_11079728_SNP [dm3] 2R_15192223_SNP [dm6]	A	G	3.965e^-4	0.921	DOWNSTREAM Sfp51E INTERGENIC
2R	17408810	2R_17408810_SNP [dm3] 2R_21521305_SNP [dm6]	G	A	3.966e^-4	0.921	SYNONYMOUS_CODING CG30289 UPSTREAM CG30288	TF binding site BDTNP1_TFBS_dl
3R	10199211	3R_10199211_SNP [dm3] 3R_14373489_SNP [dm6]	A	C	3.966e^-4	0.921	UPSTREAM NK7.1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	6649052	3L_6649052_SNP [dm3] 3L_6655952_SNP [dm6]	C	A	3.967e^-4	0.921	INTERGENIC
X	6758820	X_6758820_DEL [dm3] X_6864787_DEL [dm6]	TGAGTTTTAACTG...	T	3.968e^-4	0.921	INTRON CG14434 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18694398	3R_18694398_SNP [dm3] 3R_22868676_SNP [dm6]	T	G	3.979e^-4	0.921	INTERGENIC
3L	9104260	3L_9104260_SNP [dm3] 3L_9111160_SNP [dm6]	T	C	3.980e^-4	0.921	INTRON bol
3L	4121274	3L_4121274_SNP [dm3] 3L_4121274_SNP [dm6]	T	A	3.993e^-4	0.921	INTRON Chd64
X	16823982	X_16823982_SNP [dm3] X_16929949_SNP [dm6]	A	T	4.008e^-4	0.921	INTRON CG4928
2L	1982120	2L_1982120_SNP [dm3] 2L_1982120_SNP [dm6]	G	T	4.010e^-4	0.921	UPSTREAM CG7289 DOWNSTREAM CG15362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
X	7662920	X_7662920_SNP [dm3] X_7768887_SNP [dm6]	T	G	4.014e^-4	0.921	SYNONYMOUS_CODING CG34338	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	7662926	X_7662926_SNP [dm3] X_7768893_SNP [dm6]	C	T	4.014e^-4	0.921	SYNONYMOUS_CODING CG34338	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9079163	3L_9079163_SNP [dm3] 3L_9086063_SNP [dm6]	C	T	4.016e^-4	0.921	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	6814651	2R_6814651_SNP [dm3] 2R_10927146_SNP [dm6]	G	A	4.037e^-4	0.921	INTERGENIC
3L	17282661	3L_17282661_SNP [dm3] 3L_17289561_SNP [dm6]	G	C	4.037e^-4	0.921	INTERGENIC
3L	5129117	3L_5129117_SNP [dm3] 3L_5136017_SNP [dm6]	A	G	4.062e^-4	0.921	SPLICE_SITE_REGION CR45160 UPSTREAM CG4611 DOWNSTREAM CG4603 INTRON CG10674 EXON CR45160	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	19371689	2L_19371689_SNP [dm3] 2L_19371689_SNP [dm6]	A	T	4.064e^-4	0.921	INTRON CG17349
3L	7134127	3L_7134127_SNP [dm3] 3L_7141027_SNP [dm6]	T	C	4.068e^-4	0.921	SYNONYMOUS_CODING melt	TF binding site mE1_TFBS_chinmo
3R	16864587	3R_16864587_SNP [dm3] 3R_21038865_SNP [dm6]	G	A	4.073e^-4	0.921	SYNONYMOUS_CODING Dhc93AB	TF binding site mE1_TFBS_cad
2L	12943603	2L_12943603_SNP [dm3] 2L_12943603_SNP [dm6]	A	C	4.083e^-4	0.921	INTERGENIC
2L	11030390	2L_11030390_SNP [dm3] 2L_11030390_SNP [dm6]	G	T	4.083e^-4	0.921	NON_SYNONYMOUS_CODING Samuel UTR_3_PRIME Samuel
2R	12851065	2R_12851065_SNP [dm3] 2R_16963560_SNP [dm6]	G	A	4.103e^-4	0.921	UPSTREAM CR44376 INTERGENIC
3R	10207826	3R_10207826_SNP [dm3] 3R_14382104_SNP [dm6]	C	A	4.104e^-4	0.921	UPSTREAM soti INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13067347	3R_13067347_SNP [dm3] 3R_17241625_SNP [dm6]	A	G	4.115e^-4	0.921	INTRON beat-IIb
2R	17404817	2R_17404817_SNP [dm3] 2R_21517312_SNP [dm6]	T	C	4.132e^-4	0.921	NON_SYNONYMOUS_CODING CG10494 DOWNSTREAM MESK2
X	9002342	X_9002342_SNP [dm3] X_9108309_SNP [dm6]	A	T	4.137e^-4	0.921	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
2L	13676635	2L_13676635_SNP [dm3] 2L_13676635_SNP [dm6]	C	T	4.140e^-4	0.921	DOWNSTREAM CG31814 INTERGENIC
2R	6814663	2R_6814663_SNP [dm3] 2R_10927158_SNP [dm6]	A	G	4.142e^-4	0.921	INTERGENIC
2L	623795	2L_623795_SNP [dm3] 2L_623795_SNP [dm6]	C	T	4.153e^-4	0.921	UPSTREAM lectin-21Ca DOWNSTREAM CR44798 & 1 other INTERGENIC
2L	14378731	2L_14378731_SNP [dm3] 2L_14378731_SNP [dm6]	G	C	4.158e^-4	0.921	UTR_3_PRIME ppk
2L	12379567	2L_12379567_SNP [dm3] 2L_12379567_SNP [dm6]	G	C	4.159e^-4	0.921	INTRON bru-2
2R	20100652	2R_20100652_SNP [dm3] 2R_24213129_SNP [dm6]	C	T	4.169e^-4	0.921	UTR_3_PRIME CG30419
3R	16679932	3R_16679932_SNP [dm3] 3R_20854210_SNP [dm6]	G	A	4.176e^-4	0.921	SYNONYMOUS_CODING Ir93a UPSTREAM mir-1011
2L	13676725	2L_13676725_SNP [dm3] 2L_13676725_SNP [dm6]	T	C	4.176e^-4	0.921	DOWNSTREAM CG31814 INTERGENIC
3R	10169377	3R_10169377_SNP [dm3] 3R_14343655_SNP [dm6]	T	A	4.183e^-4	0.921	INTRON NK7.1
2R	19183636	2R_19183636_SNP [dm3] 2R_23296113_SNP [dm6]	C	A	4.191e^-4	0.921	INTERGENIC
3L	16001731	3L_16001731_SNP [dm3] 3L_16008631_SNP [dm6]	C	T	4.203e^-4	0.921	SYNONYMOUS_CODING mib1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18618761	3L_18618761_SNP [dm3] 3L_18625661_SNP [dm6]	G	A	4.216e^-4	0.921	UPSTREAM MYPT-75D DOWNSTREAM bora INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	2653159	3L_2653159_SNP [dm3] 3L_2653159_SNP [dm6]	T	C	4.216e^-4	0.921	SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304
4	904126	4_904126_SNP [dm3] 4_883500_SNP [dm6]	C	A	4.231e^-4	0.921	DOWNSTREAM CR44029 INTRON unc-13 EXON CR44029	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7417467	2R_7417467_SNP [dm3] 2R_11529962_SNP [dm6]	G	T	4.235e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Kr
2R	7417807	2R_7417807_SNP [dm3] 2R_11530302_SNP [dm6]	G	A	4.235e^-4	0.921	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
2R	7418006	2R_7418006_SNP [dm3] 2R_11530501_SNP [dm6]	A	C	4.235e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	26700840	3R_26700840_SNP [dm3] 3R_30875118_SNP [dm6]	A	C	4.240e^-4	0.921	NON_SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20773939	X_20773939_DEL [dm3] X_20902912_DEL [dm6]	TGCGT	T	4.258e^-4	0.921	INTRON shakB
2R	7532529	2R_7532529_SNP [dm3] 2R_11645024_SNP [dm6]	C	T	4.258e^-4	0.921	INTRON CG9003	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12379731	2L_12379731_DEL [dm3] 2L_12379731_DEL [dm6]	CTGGAAAATATACT...	C	4.263e^-4	0.921	INTRON bru-2
2L	19802392	2L_19802392_SNP [dm3] 2L_19802392_SNP [dm6]	C	T	4.279e^-4	0.921	INTRON sick
2L	19802397	2L_19802397_SNP [dm3] 2L_19802397_SNP [dm6]	T	A	4.279e^-4	0.921	INTRON sick
3R	1156820	3R_1156820_INS [dm3] 3R_5331098_INS [dm6]	A	AA	4.282e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	11549032	3R_11549032_SNP [dm3] 3R_15723310_SNP [dm6]	C	G	4.309e^-4	0.921	INTERGENIC
X	12305299	X_12305299_SNP [dm3] X_12411266_SNP [dm6]	T	A	4.336e^-4	0.921	UTR_3_PRIME CG32652	TF binding site mE1_TFBS_sens
2L	11194697	2L_11194697_SNP [dm3] 2L_11194697_SNP [dm6]	A	G	4.349e^-4	0.921	INTRON Ca-beta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
3L	22889057	3L_22889057_SNP [dm3] 3L_22895957_SNP [dm6]	G	C	4.352e^-4	0.921	UPSTREAM CR44688 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	20458991	3R_20458991_SNP [dm3] 3R_24633269_SNP [dm6]	T	C	4.360e^-4	0.921	SYNONYMOUS_CODING atl	TF binding site mE1_TFBS_chinmo
3L	2706395	3L_2706395_SNP [dm3] 3L_2706395_SNP [dm6]	T	G	4.380e^-4	0.921	INTRON Fife
3R	1150031	3R_1150031_SNP [dm3] 3R_5324309_SNP [dm6]	A	T	4.380e^-4	0.921	UPSTREAM mtd INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3R	14711912	3R_14711912_SNP [dm3] 3R_18886190_SNP [dm6]	T	A	4.382e^-4	0.921	INTERGENIC
X	12045766	X_12045766_SNP [dm3] X_12151733_SNP [dm6]	C	T	4.398e^-4	0.921	INTRON Ten-a
3R	17534515	3R_17534515_SNP [dm3] 3R_21708793_SNP [dm6]	C	T	4.400e^-4	0.921	INTRON CG31176
2R	15291764	2R_15291764_SNP [dm3] 2R_19404259_SNP [dm6]	A	G	4.410e^-4	0.921	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	18650442	3L_18650442_SNP [dm3] 3L_18657342_SNP [dm6]	G	A	4.433e^-4	0.921	INTRON MYPT-75D
2L	9191012	2L_9191012_SNP [dm3] 2L_9191012_SNP [dm6]	G	A	4.439e^-4	0.921	INTRON tai	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27053664	3R_27053664_SNP [dm3] 3R_31227942_SNP [dm6]	T	A	4.440e^-4	0.921	UTR_3_PRIME CG12054 INTRON CG12054	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	15761479	2L_15761479_SNP [dm3] 2L_15761479_SNP [dm6]	A	C	4.443e^-4	0.921	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	4281473	2R_4281473_SNP [dm3] 2R_8393968_SNP [dm6]	C	A	4.444e^-4	0.921	INTRON pdm3
3L	6509342	3L_6509342_SNP [dm3] 3L_6516242_SNP [dm6]	T	C	4.444e^-4	0.921	INTRON sfl
2L	10994267	2L_10994267_INS [dm3] 2L_10994267_INS [dm6]	T	TACT	4.459e^-4	0.921	UTR_3_PRIME CG16833 INTRON CG16833
2R	12684833	2R_12684833_SNP [dm3] 2R_16797328_SNP [dm6]	G	A	4.464e^-4	0.921	UPSTREAM CG15615 INTERGENIC
3L	8660984	3L_8660984_SNP [dm3] 3L_8667884_SNP [dm6]	C	T	4.466e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_eve
2L	19802463	2L_19802463_SNP [dm3] 2L_19802463_SNP [dm6]	A	C	4.467e^-4	0.921	INTRON sick
2L	19802476	2L_19802476_SNP [dm3] 2L_19802476_SNP [dm6]	G	A	4.467e^-4	0.921	INTRON sick
3R	7962596	3R_7962596_SNP [dm3] 3R_12136874_SNP [dm6]	T	G	4.469e^-4	0.921	INTERGENIC
2R	16304313	2R_16304313_SNP [dm3] 2R_20416808_SNP [dm6]	T	A	4.484e^-4	0.921	INTERGENIC
2R	16304319	2R_16304319_SNP [dm3] 2R_20416814_SNP [dm6]	T	C	4.484e^-4	0.921	INTERGENIC
3L	4034144	3L_4034144_SNP [dm3] 3L_4034144_SNP [dm6]	C	A	4.518e^-4	0.921	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
3L	4034149	3L_4034149_DEL [dm3] 3L_4034149_DEL [dm6]	ACG	A	4.518e^-4	0.921	DOWNSTREAM Gr64d INTRON Gr64d & 1 other EXON CR45042
2L	10318591	2L_10318591_SNP [dm3] 2L_10318591_SNP [dm6]	G	C	4.521e^-4	0.921	SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
X	4315424	X_4315424_SNP [dm3] X_4421391_SNP [dm6]	G	C	4.526e^-4	0.921	INTRON CR32773 & 1 other	TF binding site BDTNP1_TFBS_dl
3R	1147753	3R_1147753_SNP [dm3] 3R_5322031_SNP [dm6]	T	A	4.530e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	7129035	2R_7129035_SNP [dm3] 2R_11241530_SNP [dm6]	C	T	4.543e^-4	0.921	DOWNSTREAM Listericin INTERGENIC
3R	13723501	3R_13723501_SNP [dm3] 3R_17897779_SNP [dm6]	C	A	4.565e^-4	0.921	INTRON Rim
3R	22936285	3R_22936285_SNP [dm3] 3R_27110563_SNP [dm6]	T	C	4.598e^-4	0.921	SYNONYMOUS_CODING gb EXON CR45209	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1096457	3L_1096457_SNP [dm3] 3L_1096457_SNP [dm6]	A	G	4.600e^-4	0.921	INTRON bab1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	1587658	3R_1587658_SNP [dm3] 3R_5761936_SNP [dm6]	C	T	4.601e^-4	0.921	INTRON CG2082
3R	7386959	3R_7386959_SNP [dm3] 3R_11561237_SNP [dm6]	A	G	4.611e^-4	0.921	INTRON sea & 1 other
3R	13654401	3R_13654401_INS [dm3] 3R_17828679_INS [dm6]	G	GC	4.612e^-4	0.921	INTRON tinc
3L	19965256	3L_19965256_SNP [dm3] 3L_19972156_SNP [dm6]	T	A	4.614e^-4	0.921	INTRON Ac76E	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	16629127	2L_16629127_SNP [dm3] 2L_16629127_SNP [dm6]	A	T	4.614e^-4	0.921	INTRON CG42389 EXON CR44151
X	16640323	X_16640323_SNP [dm3] X_16746290_SNP [dm6]	T	C	4.637e^-4	0.921	UPSTREAM CG9634 INTRON CG9634
2L	12337238	2L_12337238_SNP [dm3] 2L_12337238_SNP [dm6]	A	G	4.641e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	7957655	2L_7957655_SNP [dm3] 2L_7957655_SNP [dm6]	G	A	4.642e^-4	0.921	INTRON Snoo
X	9327217	X_9327217_SNP [dm3] X_9433184_SNP [dm6]	A	G	4.651e^-4	0.921	INTRON mgl
X	9327222	X_9327222_SNP [dm3] X_9433189_SNP [dm6]	C	T	4.651e^-4	0.921	INTRON mgl
X	9327312	X_9327312_SNP [dm3] X_9433279_SNP [dm6]	G	T	4.651e^-4	0.921	INTRON mgl
X	4401793	X_4401793_SNP [dm3] X_4507760_SNP [dm6]	A	G	4.658e^-4	0.921	INTRON CR32773	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	12672993	X_12672993_SNP [dm3] X_12778960_SNP [dm6]	T	G	4.670e^-4	0.921	INTRON CG32647
3L	6293699	3L_6293699_SNP [dm3] 3L_6300599_SNP [dm6]	T	A	4.693e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5592758	X_5592758_DEL [dm3] X_5698725_DEL [dm6]	TT	T	4.697e^-4	0.921	UTR_5_PRIME CG4096 UPSTREAM CG4096	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	14281448	3R_14281448_INS [dm3] 3R_18455726_INS [dm6]	T	TT	4.703e^-4	0.921	INTRON fru
3R	14281451	3R_14281451_SNP [dm3] 3R_18455729_SNP [dm6]	T	A	4.703e^-4	0.921	INTRON fru
3R	14281454	3R_14281454_SNP [dm3] 3R_18455732_SNP [dm6]	A	G	4.703e^-4	0.921	INTRON fru
X	16650052	X_16650052_SNP [dm3] X_16756019_SNP [dm6]	T	C	4.716e^-4	0.921	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	14185348	2R_14185348_SNP [dm3] 2R_18297843_SNP [dm6]	C	T	4.730e^-4	0.921	START_GAINED CG18539 UTR_5_PRIME CG18539 UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
3L	19937044	3L_19937044_SNP [dm3] 3L_19943944_SNP [dm6]	G	A	4.735e^-4	0.921	INTRON Ac76E
3R	25199621	3R_25199621_SNP [dm3] 3R_29373899_SNP [dm6]	T	A	4.737e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	15064063	2R_15064063_SNP [dm3] 2R_19176558_SNP [dm6]	A	T	4.743e^-4	0.921	INTRON CG10737
3L	16483167	3L_16483167_SNP [dm3] 3L_16490067_SNP [dm6]	C	T	4.758e^-4	0.921	INTRON CG33158	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	20308069	3R_20308069_SNP [dm3] 3R_24482347_SNP [dm6]	G	A	4.759e^-4	0.921	INTERGENIC
X	1145648	X_1145648_SNP [dm3] X_1251615_SNP [dm6]	A	G	4.761e^-4	0.921	UTR_5_PRIME Atf3
3R	14212125	3R_14212125_SNP [dm3] 3R_18386403_SNP [dm6]	A	T	4.765e^-4	0.921	DOWNSTREAM Vha100-4 INTRON cona
3R	16493265	3R_16493265_SNP [dm3] 3R_20667543_SNP [dm6]	T	C	4.780e^-4	0.921	INTERGENIC
2L	4929206	2L_4929206_SNP [dm3] 2L_4929206_SNP [dm6]	A	G	4.786e^-4	0.921	UPSTREAM hoe1 INTRON hoe1
3L	8437765	3L_8437765_SNP [dm3] 3L_8444665_SNP [dm6]	A	G	4.818e^-4	0.921	INTRON CG6983	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1068775	3L_1068775_SNP [dm3] 3L_1068775_SNP [dm6]	G	T	4.828e^-4	0.921	INTRON bab1
3R	16631978	3R_16631978_SNP [dm3] 3R_20806256_SNP [dm6]	A	G	4.831e^-4	0.921	UTR_3_PRIME Syp DOWNSTREAM Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	4243378	2R_4243378_SNP [dm3] 2R_8355873_SNP [dm6]	C	G	4.838e^-4	0.921	INTRON pdm3
2L	1034769	2L_1034769_SNP [dm3] 2L_1034769_SNP [dm6]	C	T	4.853e^-4	0.921	UPSTREAM IA-2 INTRON IA-2
2R	11606229	2R_11606229_SNP [dm3] 2R_15718724_SNP [dm6]	C	T	4.861e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8407044	3L_8407044_SNP [dm3] 3L_8413944_SNP [dm6]	G	A	4.864e^-4	0.921	UTR_3_PRIME mtrm INTRON Exo70
3L	2431346	3L_2431346_DEL [dm3] 3L_2431346_DEL [dm6]	TT	T	4.865e^-4	0.921	INTRON CG45186
2R	12167221	2R_12167221_SNP [dm3] 2R_16279716_SNP [dm6]	C	A	4.871e^-4	0.921	UPSTREAM CG15704 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13953878	2R_13953878_SNP [dm3] 2R_18066373_SNP [dm6]	C	A	4.874e^-4	0.921	INTRON CG34386
3R	18529101	3R_18529101_SNP [dm3] 3R_22703379_SNP [dm6]	C	T	4.882e^-4	0.921	SYNONYMOUS_CODING CG6972 DOWNSTREAM CG13842	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	9298823	X_9298823_INS [dm3] X_9404790_INS [dm6]	T	CAATATA	4.884e^-4	0.921	INTRON mgl
X	9298831	X_9298831_SNP [dm3] X_9404798_SNP [dm6]	C	T	4.884e^-4	0.921	INTRON mgl
2L	13676838	2L_13676838_SNP [dm3] 2L_13676838_SNP [dm6]	A	G	4.906e^-4	0.921	DOWNSTREAM CG31814 INTERGENIC
2R	4505300	2R_4505300_SNP [dm3] 2R_8617795_SNP [dm6]	A	C	4.911e^-4	0.921	SYNONYMOUS_CODING Cirl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	23134501	3R_23134501_SNP [dm3] 3R_27308779_SNP [dm6]	A	G	4.911e^-4	0.921	SYNONYMOUS_CODING CG3339
X	7661913	X_7661913_SNP [dm3] X_7767880_SNP [dm6]	T	A	4.926e^-4	0.921	UPSTREAM CG34338 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
2R	17328220	2R_17328220_SNP [dm3] 2R_21440715_SNP [dm6]	A	T	4.927e^-4	0.921	INTRON Sdc
2L	1985531	2L_1985531_SNP [dm3] 2L_1985531_SNP [dm6]	G	A	4.930e^-4	0.921	SYNONYMOUS_CODING Got2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18323015	2R_18323015_SNP [dm3] 2R_22435510_SNP [dm6]	C	A	4.951e^-4	0.921	INTERGENIC
2L	19679345	2L_19679345_SNP [dm3] 2L_19679345_SNP [dm6]	C	T	4.955e^-4	0.921	INTRON Lar
2L	19679380	2L_19679380_SNP [dm3] 2L_19679380_SNP [dm6]	T	G	4.955e^-4	0.921	INTRON Lar
3L	7276979	3L_7276979_SNP [dm3] 3L_7283879_SNP [dm6]	G	A	4.958e^-4	0.921	INTRON unc-13-4A
X	19866513	X_19866513_SNP [dm3] X_19972480_SNP [dm6]	T	C	4.960e^-4	0.921	INTERGENIC
X	19866531	X_19866531_SNP [dm3] X_19972498_SNP [dm6]	T	G	4.960e^-4	0.921	INTERGENIC
X	19866726	X_19866726_SNP [dm3] X_19972693_SNP [dm6]	A	T	4.960e^-4	0.921	INTERGENIC
X	19866967	X_19866967_SNP [dm3] X_19972934_SNP [dm6]	T	G	4.960e^-4	0.921	INTERGENIC
X	19867012	X_19867012_SNP [dm3] X_19972979_SNP [dm6]	A	T	4.960e^-4	0.921	INTERGENIC
3R	20459660	3R_20459660_SNP [dm3] 3R_24633938_SNP [dm6]	C	T	4.969e^-4	0.921	UTR_3_PRIME atl DOWNSTREAM CG43222
2R	5797465	2R_5797465_SNP [dm3] 2R_9909960_SNP [dm6]	C	T	4.971e^-4	0.921	SYNONYMOUS_CODING FMRFa UPSTREAM Etf-QO	TF binding site mE1_TFBS_chinmo
2L	7201430	2L_7201430_SNP [dm3] 2L_7201430_SNP [dm6]	T	C	4.982e^-4	0.921	INTRON CG4502
3R	26859722	3R_26859722_SNP [dm3] 3R_31034000_SNP [dm6]	C	G	5.001e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	9186572	3L_9186572_SNP [dm3] 3L_9193472_SNP [dm6]	A	C	5.016e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6861724	2L_6861724_SNP [dm3] 2L_6861724_SNP [dm6]	T	C	5.016e^-4	0.921	SYNONYMOUS_CODING Nha1 DOWNSTREAM l_2_k09022	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8876852	2L_8876852_SNP [dm3] 2L_8876852_SNP [dm6]	A	T	5.026e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	26653406	3R_26653406_SNP [dm3] 3R_30827684_SNP [dm6]	C	T	5.028e^-4	0.921	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
2R	13953717	2R_13953717_SNP [dm3] 2R_18066212_SNP [dm6]	T	C	5.033e^-4	0.921	INTRON CG34386	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	23073902	3R_23073902_SNP [dm3] 3R_27248180_SNP [dm6]	C	T	5.039e^-4	0.921	UPSTREAM CG5984 DOWNSTREAM CG5987 INTERGENIC
3R	23073925	3R_23073925_SNP [dm3] 3R_27248203_SNP [dm6]	T	G	5.039e^-4	0.921	UPSTREAM CG5984 DOWNSTREAM CG5987 INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13676625	2L_13676625_SNP [dm3] 2L_13676625_SNP [dm6]	T	G	5.045e^-4	0.921	DOWNSTREAM CG31814 INTERGENIC
2L	10932724	2L_10932724_SNP [dm3] 2L_10932724_SNP [dm6]	G	C	5.051e^-4	0.921	INTRON dpr2
2R	11000078	2R_11000078_SNP [dm3] 2R_15112573_SNP [dm6]	A	T	5.060e^-4	0.921	INTERGENIC
2R	11000089	2R_11000089_SNP [dm3] 2R_15112584_SNP [dm6]	T	A	5.060e^-4	0.921	INTERGENIC
3L	19231120	3L_19231120_SNP [dm3] 3L_19238020_SNP [dm6]	G	A	5.086e^-4	0.921	DOWNSTREAM CG33647 INTERGENIC
2L	19370721	2L_19370721_SNP [dm3] 2L_19370721_SNP [dm6]	G	A	5.100e^-4	0.921	SYNONYMOUS_CODING CG17349
X	7665492	X_7665492_SNP [dm3] X_7771459_SNP [dm6]	A	G	5.132e^-4	0.921	INTERGENIC
X	12891954	X_12891954_SNP [dm3] X_12997921_SNP [dm6]	A	G	5.138e^-4	0.921	INTRON rad
2L	3057535	2L_3057535_DEL [dm3] 2L_3057535_DEL [dm6]	ACAA	A	5.152e^-4	0.921	INTRON CG3523	TF binding site BDTNP1_TFBS_da
3L	13718478	3L_13718478_SNP [dm3] 3L_13725378_SNP [dm6]	C	T	5.172e^-4	0.921	INTRON bru-3
3R	17354641	3R_17354641_SNP [dm3] 3R_21528919_SNP [dm6]	C	T	5.174e^-4	0.921	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	20310813	3R_20310813_SNP [dm3] 3R_24485091_SNP [dm6]	G	C	5.177e^-4	0.921	UPSTREAM nAChRalpha2 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	15781707	2R_15781707_SNP [dm3] 2R_19894202_SNP [dm6]	T	A	5.180e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	13263162	3R_13263162_SNP [dm3] 3R_17437440_SNP [dm6]	G	A	5.187e^-4	0.921	INTRON CG5873
2R	13954262	2R_13954262_SNP [dm3] 2R_18066757_SNP [dm6]	A	T	5.191e^-4	0.921	INTRON CG34386
2R	8831715	2R_8831715_SNP [dm3] 2R_12944210_SNP [dm6]	T	G	5.198e^-4	0.921	INTRON Mdr49
2R	18162025	2R_18162025_SNP [dm3] 2R_22274520_SNP [dm6]	C	G	5.204e^-4	0.921	INTRON dve
2R	15063553	2R_15063553_SNP [dm3] 2R_19176048_SNP [dm6]	A	G	5.205e^-4	0.921	INTRON CG10737
3R	16527612	3R_16527612_SNP [dm3] 3R_20701890_SNP [dm6]	T	C	5.220e^-4	0.921	INTRON Oamb
2R	19647610	2R_19647610_SNP [dm3] 2R_23760087_SNP [dm6]	T	G	5.247e^-4	0.921	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19905250	2L_19905250_SNP [dm3] 2L_19905250_SNP [dm6]	C	T	5.257e^-4	0.921	INTRON sick
3R	25439822	3R_25439822_SNP [dm3] 3R_29614100_SNP [dm6]	G	A	5.295e^-4	0.921	INTRON alph
3L	6607901	3L_6607901_SNP [dm3] 3L_6614801_SNP [dm6]	T	C	5.297e^-4	0.921	INTRON CG8398
3L	10477634	3L_10477634_SNP [dm3] 3L_10484534_SNP [dm6]	A	G	5.310e^-4	0.921	INTRON A2bp1
X	13770044	X_13770044_DEL [dm3] X_13876011_DEL [dm6]	CCCAGTGCTATGCATGAATA...	C	5.313e^-4	0.921	INTRON mamo
3R	7434773	3R_7434773_SNP [dm3] 3R_11609051_SNP [dm6]	T	C	5.321e^-4	0.921	INTRON Jupiter
3L	12900542	3L_12900542_SNP [dm3] 3L_12907442_SNP [dm6]	A	G	5.322e^-4	0.921	INTERGENIC
3L	3316763	3L_3316763_SNP [dm3] 3L_3316763_SNP [dm6]	T	C	5.322e^-4	0.921	UPSTREAM Drsl5 DOWNSTREAM Drsl4 INTERGENIC
3R	18590503	3R_18590503_SNP [dm3] 3R_22764781_SNP [dm6]	A	T	5.323e^-4	0.921	NON_SYNONYMOUS_CODING CG4721 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10283225	2L_10283225_SNP [dm3] 2L_10283225_SNP [dm6]	T	G	5.336e^-4	0.921	NON_SYNONYMOUS_CODING CG5604	TF binding site mE1_TFBS_cad
3L	15989999	3L_15989999_SNP [dm3] 3L_15996899_SNP [dm6]	A	G	5.337e^-4	0.921	INTRON CG5830
2L	14378792	2L_14378792_SNP [dm3] 2L_14378792_SNP [dm6]	A	T	5.343e^-4	0.921	UTR_3_PRIME ppk
2L	14993184	2L_14993184_SNP [dm3] 2L_14993184_SNP [dm6]	A	C	5.349e^-4	0.921	INTRON mol
X	13837375	X_13837375_SNP [dm3] X_13943342_SNP [dm6]	A	T	5.356e^-4	0.921	INTRON mamo	TF binding site mE1_TFBS_HSA
3R	25065275	3R_25065275_SNP [dm3] 3R_29239553_SNP [dm6]	G	T	5.385e^-4	0.921	SYNONYMOUS_CODING CG31427 UPSTREAM CG11951
3R	16489205	3R_16489205_SNP [dm3] 3R_20663483_SNP [dm6]	C	T	5.395e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	19825452	2L_19825452_SNP [dm3] 2L_19825452_SNP [dm6]	T	C	5.400e^-4	0.921	INTRON sick
2L	1961650	2L_1961650_SNP [dm3] 2L_1961650_SNP [dm6]	T	A	5.434e^-4	0.921	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	26315523	3R_26315523_SNP [dm3] 3R_30489801_SNP [dm6]	C	G	5.434e^-4	0.921	UTR_3_PRIME Jon99Fi UPSTREAM PH4alphaSG2
3R	13064137	3R_13064137_SNP [dm3] 3R_17238415_SNP [dm6]	G	A	5.434e^-4	0.921	INTRON beat-IIb
3L	3316892	3L_3316892_SNP [dm3] 3L_3316892_SNP [dm6]	G	A	5.435e^-4	0.921	NON_SYNONYMOUS_CODING Drsl5 DOWNSTREAM Drsl4
2R	18732537	2R_18732537_SNP [dm3] 2R_22845014_SNP [dm6]	T	A	5.443e^-4	0.921	UPSTREAM CG3649 INTERGENIC
2R	18732541	2R_18732541_SNP [dm3] 2R_22845018_SNP [dm6]	A	G	5.443e^-4	0.921	UPSTREAM CG3649 INTERGENIC
X	20935082	X_20935082_SNP [dm3] X_21064055_SNP [dm6]	G	A	5.449e^-4	0.921	INTRON bves & 1 other
3L	19953642	3L_19953642_SNP [dm3] 3L_19960542_SNP [dm6]	G	A	5.459e^-4	0.921	INTRON Ac76E
3R	22310488	3R_22310488_SNP [dm3] 3R_26484766_SNP [dm6]	A	T	5.466e^-4	0.921	INTRON plum
3L	897150	3L_897150_SNP [dm3] 3L_897150_SNP [dm6]	A	T	5.466e^-4	0.921	NON_SYNONYMOUS_CODING CG34056 UPSTREAM CG34057
3R	18690369	3R_18690369_SNP [dm3] 3R_22864647_SNP [dm6]	A	G	5.473e^-4	0.921	INTERGENIC
3R	19704091	3R_19704091_SNP [dm3] 3R_23878369_SNP [dm6]	G	A	5.477e^-4	0.921	INTRON Pli
3R	19704092	3R_19704092_SNP [dm3] 3R_23878370_SNP [dm6]	C	A	5.477e^-4	0.921	INTRON Pli
3R	26731870	3R_26731870_SNP [dm3] 3R_30906148_SNP [dm6]	A	G	5.477e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26731877	3R_26731877_INS [dm3] 3R_30906155_INS [dm6]	T	AA	5.477e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26731958	3R_26731958_DEL [dm3] 3R_30906236_DEL [dm6]	TCTTT	CA	5.477e^-4	0.921	INTERGENIC
X	9298842	X_9298842_SNP [dm3] X_9404809_SNP [dm6]	A	T	5.491e^-4	0.921	INTRON mgl
2L	3505635	2L_3505635_SNP [dm3] 2L_3505635_SNP [dm6]	A	T	5.492e^-4	0.921	INTRON tim	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3L	18030414	3L_18030414_SNP [dm3] 3L_18037314_SNP [dm6]	C	T	5.504e^-4	0.921	INTRON Eip75B	TF binding site BDTNP1_TFBS_dl
3L	17405013	3L_17405013_SNP [dm3] 3L_17411913_SNP [dm6]	A	T	5.506e^-4	0.921	INTRON blot
2R	6225405	2R_6225405_SNP [dm3] 2R_10337900_SNP [dm6]	G	A	5.525e^-4	0.921	INTRON CG42732
3L	11178580	3L_11178580_SNP [dm3] 3L_11185480_SNP [dm6]	A	T	5.529e^-4	0.921	INTRON GlcAT-P
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	5.531e^-4	0.921	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10676813	3L_10676813_SNP [dm3] 3L_10683713_SNP [dm6]	C	T	5.552e^-4	0.921	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3064047	2L_3064047_SNP [dm3] 2L_3064047_SNP [dm6]	T	C	5.552e^-4	0.921	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	14153926	3L_14153926_SNP [dm3] 3L_14160826_SNP [dm6]	A	G	5.552e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs
3L	14153939	3L_14153939_SNP [dm3] 3L_14160839_SNP [dm6]	G	A	5.552e^-4	0.921	INTERGENIC	regulatory region REDfly_CRMs
3L	8682631	3L_8682631_SNP [dm3] 3L_8689531_SNP [dm6]	A	G	5.566e^-4	0.921	INTERGENIC
2R	5857820	2R_5857820_SNP [dm3] 2R_9970315_SNP [dm6]	C	T	5.573e^-4	0.921	SYNONYMOUS_CODING Adam UPSTREAM CG12134	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	3002779	3L_3002779_SNP [dm3] 3L_3002779_SNP [dm6]	G	A	5.575e^-4	0.921	UPSTREAM FMRFaR INTRON FMRFaR
X	12437946	X_12437946_SNP [dm3] X_12543913_SNP [dm6]	A	G	5.576e^-4	0.921	INTRON CG43921
2L	8662749	2L_8662749_SNP [dm3] 2L_8662749_SNP [dm6]	G	A	5.579e^-4	0.921	INTRON Sema-1a
3R	14146574	3R_14146574_SNP [dm3] 3R_18320852_SNP [dm6]	T	G	5.584e^-4	0.921	INTRON CG31235
2R	12167253	2R_12167253_SNP [dm3] 2R_16279748_SNP [dm6]	T	G	5.588e^-4	0.921	UPSTREAM CG15704 INTERGENIC
X	12437953	X_12437953_SNP [dm3] X_12543920_SNP [dm6]	C	A	5.607e^-4	0.921	INTRON CG43921
X	12437965	X_12437965_SNP [dm3] X_12543932_SNP [dm6]	A	G	5.607e^-4	0.921	INTRON CG43921
X	12437972	X_12437972_INS [dm3] X_12543939_INS [dm6]	T	CTGCAGGG	5.607e^-4	0.921	INTRON CG43921
X	12437991	X_12437991_SNP [dm3] X_12543958_SNP [dm6]	C	T	5.607e^-4	0.921	INTRON CG43921
3L	12976340	3L_12976340_SNP [dm3] 3L_12983240_SNP [dm6]	G	A	5.608e^-4	0.921	INTERGENIC
3R	14554089	3R_14554089_SNP [dm3] 3R_18728367_SNP [dm6]	A	G	5.616e^-4	0.921	INTRON Cha & 1 other	TF binding site mE1_TFBS_chinmo
2L	13676621	2L_13676621_SNP [dm3] 2L_13676621_SNP [dm6]	A	T	5.618e^-4	0.921	DOWNSTREAM CG31814 INTERGENIC
2L	923570	2L_923570_SNP [dm3] 2L_923570_SNP [dm6]	C	T	5.631e^-4	0.921	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13789841	2R_13789841_SNP [dm3] 2R_17902336_SNP [dm6]	A	G	5.641e^-4	0.921	INTRON Elk
2L	11653365	2L_11653365_SNP [dm3] 2L_11653365_SNP [dm6]	G	C	5.643e^-4	0.921	SYNONYMOUS_CODING CG4983	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	15893128	2R_15893128_SNP [dm3] 2R_20005623_SNP [dm6]	T	A	5.651e^-4	0.921	UPSTREAM CG16898 INTERGENIC
2R	16253813	2R_16253813_INS [dm3] 2R_20366308_INS [dm6]	A	ACA	5.664e^-4	0.921	INTERGENIC
2R	16253858	2R_16253858_SNP [dm3] 2R_20366353_SNP [dm6]	A	G	5.664e^-4	0.921	INTERGENIC
3L	2660756	3L_2660756_SNP [dm3] 3L_2660756_SNP [dm6]	T	C	5.665e^-4	0.921	UPSTREAM CG33234 DOWNSTREAM CG33233 INTRON Fife & 1 other
X	22150622	X_22150622_SNP [dm3] X_22748786_SNP [dm6]	G	A	5.670e^-4	0.921	INTRON CR44997
2R	13893471	2R_13893471_SNP [dm3] 2R_18005966_SNP [dm6]	G	A	5.671e^-4	0.921	INTRON dpr13 EXON CR44419
2L	20462601	2L_20462601_SNP [dm3] 2L_20462601_SNP [dm6]	T	G	5.689e^-4	0.921	NON_SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	20462630	2L_20462630_SNP [dm3] 2L_20462630_SNP [dm6]	A	G	5.689e^-4	0.921	SYNONYMOUS_CODING CG2493 DOWNSTREAM Cdc23	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	25606435	3R_25606435_SNP [dm3] 3R_29780713_SNP [dm6]	G	T	5.690e^-4	0.921	UPSTREAM fig INTRON kay
3R	7383357	3R_7383357_SNP [dm3] 3R_11557635_SNP [dm6]	C	T	5.708e^-4	0.921	UPSTREAM CG10898 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	3010405	3L_3010405_SNP [dm3] 3L_3010405_SNP [dm6]	C	T	5.714e^-4	0.921	UTR_3_PRIME FMRFaR
3L	10267180	3L_10267180_SNP [dm3] 3L_10274080_SNP [dm6]	G	T	5.729e^-4	0.921	NON_SYNONYMOUS_CODING Or67d
3L	14959257	3L_14959257_SNP [dm3] 3L_14966157_SNP [dm6]	C	A	5.732e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	1129497	3R_1129497_SNP [dm3] 3R_5303775_SNP [dm6]	C	A	5.733e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15795113	3R_15795113_SNP [dm3] 3R_19969391_SNP [dm6]	T	A	5.738e^-4	0.921	INTRON Hs6st
X	21057647	X_21057647_SNP [dm3] X_21186620_SNP [dm6]	T	C	5.738e^-4	0.921	INTERGENIC
3R	17614229	3R_17614229_SNP [dm3] 3R_21788507_SNP [dm6]	T	C	5.746e^-4	0.921	INTRON CASK
3R	17614238	3R_17614238_SNP [dm3] 3R_21788516_SNP [dm6]	C	T	5.746e^-4	0.921	INTRON CASK
2L	15159247	2L_15159247_DEL [dm3] 2L_15159247_DEL [dm6]	AGTGGAGGTGTACATT...	A	5.747e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	15159267	2L_15159267_DEL [dm3] 2L_15159267_DEL [dm6]	AAAATA	CC	5.747e^-4	0.921	DOWNSTREAM CR44771 INTERGENIC
2L	7785244	2L_7785244_SNP [dm3] 2L_7785244_SNP [dm6]	A	T	5.756e^-4	0.921	NON_SYNONYMOUS_CODING CG7154 DOWNSTREAM CG7149	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	14082556	2R_14082556_SNP [dm3] 2R_18195051_SNP [dm6]	A	T	5.760e^-4	0.921	INTERGENIC
3R	26070170	3R_26070170_SNP [dm3] 3R_30244448_SNP [dm6]	G	A	5.764e^-4	0.921	SYNONYMOUS_CODING CG9733	TF binding site mE1_TFBS_chinmo
2L	8769798	2L_8769798_SNP [dm3] 2L_8769798_SNP [dm6]	C	T	5.785e^-4	0.921	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3L	17107906	3L_17107906_SNP [dm3] 3L_17114806_SNP [dm6]	C	T	5.793e^-4	0.921	INTRON Rbp6
2L	14793435	2L_14793435_SNP [dm3] 2L_14793435_SNP [dm6]	G	A	5.795e^-4	0.921	INTERGENIC
2R	10004815	2R_10004815_SNP [dm3] 2R_14117310_SNP [dm6]	G	A	5.800e^-4	0.921	INTRON Prosap
2L	9012139	2L_9012139_SNP [dm3] 2L_9012139_SNP [dm6]	A	G	5.800e^-4	0.921	UPSTREAM CG13102 DOWNSTREAM CG9568 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_sna
2R	18026010	2R_18026010_SNP [dm3] 2R_22138505_SNP [dm6]	T	A	5.804e^-4	0.921	UPSTREAM CG11269 INTRON a
2R	18026013	2R_18026013_SNP [dm3] 2R_22138508_SNP [dm6]	A	T	5.804e^-4	0.921	UPSTREAM CG11269 INTRON a
3L	16818441	3L_16818441_SNP [dm3] 3L_16825341_SNP [dm6]	G	A	5.806e^-4	0.921	INTRON CG13024
2R	9422188	2R_9422188_SNP [dm3] 2R_13534683_SNP [dm6]	A	T	5.815e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
3L	1869102	3L_1869102_SNP [dm3] 3L_1869102_SNP [dm6]	C	G	5.817e^-4	0.921	UTR_3_PRIME CG12025 UPSTREAM CG13924 DOWNSTREAM CG12025
3L	16818418	3L_16818418_SNP [dm3] 3L_16825318_SNP [dm6]	C	T	5.817e^-4	0.921	INTRON CG13024
3R	26684770	3R_26684770_SNP [dm3] 3R_30859048_SNP [dm6]	A	G	5.842e^-4	0.921	INTERGENIC
3L	6905809	3L_6905809_SNP [dm3] 3L_6912709_SNP [dm6]	G	A	5.854e^-4	0.921	SYNONYMOUS_CODING Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	7666008	X_7666008_SNP [dm3] X_7771975_SNP [dm6]	T	C	5.854e^-4	0.921	INTERGENIC
3L	12486417	3L_12486417_DEL [dm3] 3L_12493317_DEL [dm6]	AAATTCTATTGCACAGGTTG...	A	5.863e^-4	0.921	INTRON CG10657 EXON CR45682	TF binding site mE1_TFBS_cad
3L	16661555	3L_16661555_SNP [dm3] 3L_16668455_SNP [dm6]	C	T	5.874e^-4	0.921	UPSTREAM Galphaf INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
2R	7418028	2R_7418028_SNP [dm3] 2R_11530523_SNP [dm6]	T	G	5.887e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	629873	2L_629873_SNP [dm3] 2L_629873_SNP [dm6]	A	G	5.905e^-4	0.921	DOWNSTREAM CR45369 INTERGENIC
3R	26732108	3R_26732108_SNP [dm3] 3R_30906386_SNP [dm6]	C	G	5.907e^-4	0.921	INTERGENIC
3L	10757340	3L_10757340_INS [dm3] 3L_10764240_INS [dm6]	G	GAGCGAG	5.909e^-4	0.921	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	3071272	2L_3071272_SNP [dm3] 2L_3071272_SNP [dm6]	C	T	5.924e^-4	0.921	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	17109432	3L_17109432_SNP [dm3] 3L_17116332_SNP [dm6]	C	T	5.933e^-4	0.921	INTRON Rbp6
3R	10169383	3R_10169383_SNP [dm3] 3R_14343661_SNP [dm6]	A	G	5.934e^-4	0.921	INTRON NK7.1
2R	10280432	2R_10280432_SNP [dm3] 2R_14392927_SNP [dm6]	A	C	5.954e^-4	0.921	DOWNSTREAM CG10104 INTERGENIC
4	769188	4_769188_SNP [dm3] 4_748562_SNP [dm6]	T	A	5.960e^-4	0.921	SYNONYMOUS_CODING bt
2L	7117240	2L_7117240_SNP [dm3] 2L_7117240_SNP [dm6]	T	C	5.978e^-4	0.921	INTRON Pvf3
3R	23136301	3R_23136301_SNP [dm3] 3R_27310579_SNP [dm6]	T	A	5.988e^-4	0.921	INTRON CG3339
3R	1114352	3R_1114352_SNP [dm3] 3R_5288630_SNP [dm6]	T	G	5.989e^-4	0.921	INTRON mtd
2R	9422057	2R_9422057_SNP [dm3] 2R_13534552_SNP [dm6]	T	A	6.009e^-4	0.921	UPSTREAM Vmat INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	2630631	2L_2630631_SNP [dm3] 2L_2630631_SNP [dm6]	C	G	6.010e^-4	0.921	INTERGENIC
X	15869412	X_15869412_SNP [dm3] X_15975379_SNP [dm6]	T	C	6.011e^-4	0.921	SYNONYMOUS_CODING Or13a
3L	13405039	3L_13405039_SNP [dm3] 3L_13411939_SNP [dm6]	A	G	6.017e^-4	0.921	SYNONYMOUS_CODING CG10222 UPSTREAM flr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	9458013	2R_9458013_DEL [dm3] 2R_13570508_DEL [dm6]	GCAACA	T	6.032e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9458020	2R_9458020_SNP [dm3] 2R_13570515_SNP [dm6]	G	T	6.032e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9458022	2R_9458022_SNP [dm3] 2R_13570517_SNP [dm6]	C	T	6.032e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9458025	2R_9458025_SNP [dm3] 2R_13570520_SNP [dm6]	G	T	6.032e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2R	9458035	2R_9458035_SNP [dm3] 2R_13570530_SNP [dm6]	C	T	6.032e^-4	0.921	DOWNSTREAM CG42807 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	1021675	2L_1021675_SNP [dm3] 2L_1021675_SNP [dm6]	C	A	6.039e^-4	0.921	INTRON IA-2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	9392473	X_9392473_SNP [dm3] X_9498440_SNP [dm6]	T	G	6.043e^-4	0.921	INTRON mgl	TF binding site BDTNP1_TFBS_dl
X	4652389	X_4652389_SNP [dm3] X_4758356_SNP [dm6]	T	C	6.053e^-4	0.921	INTERGENIC
3R	20565915	3R_20565915_SNP [dm3] 3R_24740193_SNP [dm6]	T	C	6.059e^-4	0.921	INTRON tok
2L	3524010	2L_3524010_SNP [dm3] 2L_3524010_SNP [dm6]	G	A	6.062e^-4	0.921	UTR_5_PRIME Sr-CIV
X	21325303	X_21325303_SNP [dm3] X_21454276_SNP [dm6]	A	T	6.071e^-4	0.921	INTRON CG42343
X	16650066	X_16650066_SNP [dm3] X_16756033_SNP [dm6]	A	G	6.072e^-4	0.921	SYNONYMOUS_CODING if	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	8681999	2L_8681999_SNP [dm3] 2L_8681999_SNP [dm6]	A	G	6.094e^-4	0.921	SYNONYMOUS_CODING CG9289	TF binding site mE1_TFBS_cad
2L	8682051	2L_8682051_INS [dm3] 2L_8682051_INS [dm6]	T	TATAA	6.094e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad
2L	8682060	2L_8682060_SNP [dm3] 2L_8682060_SNP [dm6]	T	A	6.094e^-4	0.921	INTRON CG9289	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18837298	3L_18837298_INS [dm3] 3L_18844198_INS [dm6]	A	GT	6.099e^-4	0.921	INTRON Indy
3L	8841392	3L_8841392_SNP [dm3] 3L_8848292_SNP [dm6]	A	T	6.107e^-4	0.921	INTRON dally	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15772819	3R_15772819_SNP [dm3] 3R_19947097_SNP [dm6]	A	G	6.126e^-4	0.921	INTRON Hs6st
3L	9079101	3L_9079101_SNP [dm3] 3L_9086001_SNP [dm6]	A	G	6.134e^-4	0.921	NON_SYNONYMOUS_CODING Tequila INTRON Tequila
2R	18831558	2R_18831558_SNP [dm3] 2R_22944035_SNP [dm6]	G	T	6.142e^-4	0.921	NON_SYNONYMOUS_CODING CG42694
3L	15042494	3L_15042494_SNP [dm3] 3L_15049394_SNP [dm6]	A	G	6.163e^-4	0.921	SYNONYMOUS_CODING CG43678 DOWNSTREAM CG18581 & 1 other INTRON Sytbeta	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25427006	3R_25427006_SNP [dm3] 3R_29601284_SNP [dm6]	T	C	6.171e^-4	0.921	UPSTREAM CG7568 INTRON alph
3R	25427015	3R_25427015_SNP [dm3] 3R_29601293_SNP [dm6]	T	C	6.171e^-4	0.921	UPSTREAM CG7568 INTRON alph
2L	3069864	2L_3069864_SNP [dm3] 2L_3069864_SNP [dm6]	G	A	6.190e^-4	0.921	SYNONYMOUS_CODING toc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9929645	2L_9929645_SNP [dm3] 2L_9929645_SNP [dm6]	C	G	6.196e^-4	0.921	UPSTREAM CG42367 INTRON CG42366	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	11789798	2L_11789798_SNP [dm3] 2L_11789798_SNP [dm6]	A	G	6.199e^-4	0.921	UPSTREAM CG14932 DOWNSTREAM CG14931 INTERGENIC
2L	18347130	2L_18347130_SNP [dm3] 2L_18347130_SNP [dm6]	T	G	6.200e^-4	0.921	INTRON Fas3
2L	18347138	2L_18347138_SNP [dm3] 2L_18347138_SNP [dm6]	A	G	6.200e^-4	0.921	INTRON Fas3
3L	6906658	3L_6906658_DEL [dm3] 3L_6913558_DEL [dm6]	TATTTTC	T	6.201e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	6906666	3L_6906666_SNP [dm3] 3L_6913566_SNP [dm6]	T	A	6.201e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	6906669	3L_6906669_SNP [dm3] 3L_6913569_SNP [dm6]	T	C	6.201e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	6906673	3L_6906673_SNP [dm3] 3L_6913573_SNP [dm6]	T	A	6.201e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	6906696	3L_6906696_SNP [dm3] 3L_6913596_SNP [dm6]	G	A	6.201e^-4	0.921	INTRON Prat2	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	2875343	3L_2875343_SNP [dm3] 3L_2875343_SNP [dm6]	A	G	6.206e^-4	0.921	INTRON CG43444	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12184949	2L_12184949_SNP [dm3] 2L_12184949_SNP [dm6]	G	A	6.225e^-4	0.921	INTRON aret
2L	19370775	2L_19370775_SNP [dm3] 2L_19370775_SNP [dm6]	T	A	6.228e^-4	0.921	INTRON CG17349
3R	1144535	3R_1144535_SNP [dm3] 3R_5318813_SNP [dm6]	G	A	6.232e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17109075	3L_17109075_SNP [dm3] 3L_17115975_SNP [dm6]	G	C	6.236e^-4	0.921	INTRON Rbp6
3L	10773851	3L_10773851_SNP [dm3] 3L_10780751_SNP [dm6]	C	A	6.250e^-4	0.921	INTERGENIC
X	16640322	X_16640322_SNP [dm3] X_16746289_SNP [dm6]	T	G	6.259e^-4	0.921	UPSTREAM CG9634 INTRON CG9634
3R	26372311	3R_26372311_SNP [dm3] 3R_30546589_SNP [dm6]	T	C	6.267e^-4	0.921	SPLICE_SITE_DONOR tmod UPSTREAM tmod INTRON tmod
3R	22310159	3R_22310159_SNP [dm3] 3R_26484437_SNP [dm6]	C	G	6.308e^-4	0.921	INTRON plum
3L	2116928	3L_2116928_SNP [dm3] 3L_2116928_SNP [dm6]	C	T	6.310e^-4	0.921	DOWNSTREAM zormin INTERGENIC
3R	22310519	3R_22310519_SNP [dm3] 3R_26484797_SNP [dm6]	T	A	6.315e^-4	0.921	INTRON plum
3R	22310523	3R_22310523_SNP [dm3] 3R_26484801_SNP [dm6]	T	A	6.315e^-4	0.921	INTRON plum
X	5029906	X_5029906_SNP [dm3] X_5135873_SNP [dm6]	G	T	6.321e^-4	0.921	INTRON rg & 1 other
2L	7236073	2L_7236073_SNP [dm3] 2L_7236073_SNP [dm6]	G	A	6.322e^-4	0.921	INTRON Ndae1	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	22677822	3R_22677822_SNP [dm3] 3R_26852100_SNP [dm6]	T	C	6.324e^-4	0.921	INTRON Lerp
2L	1961493	2L_1961493_SNP [dm3] 2L_1961493_SNP [dm6]	C	T	6.333e^-4	0.921	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9002284	X_9002284_SNP [dm3] X_9108251_SNP [dm6]	C	T	6.344e^-4	0.921	UTR_3_PRIME Arfrp1 UPSTREAM AP-1gamma	TF binding site BDTNP1_TFBS_dl
2L	10318736	2L_10318736_SNP [dm3] 2L_10318736_SNP [dm6]	C	T	6.350e^-4	0.921	NON_SYNONYMOUS_CODING CG5381	TF binding site mE1_TFBS_sens
2L	19370740	2L_19370740_SNP [dm3] 2L_19370740_SNP [dm6]	A	G	6.380e^-4	0.921	INTRON CG17349
3R	25439403	3R_25439403_SNP [dm3] 3R_29613681_SNP [dm6]	G	A	6.381e^-4	0.921	INTRON alph
2R	13156696	2R_13156696_SNP [dm3] 2R_17269191_SNP [dm6]	G	C	6.387e^-4	0.921	INTRON mbl	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run
2L	1982107	2L_1982107_SNP [dm3] 2L_1982107_SNP [dm6]	G	A	6.414e^-4	0.921	UPSTREAM CG7289 DOWNSTREAM CG15362 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_ttk
2R	7551730	2R_7551730_SNP [dm3] 2R_11664225_SNP [dm6]	A	G	6.416e^-4	0.921	INTRON Roc2
2L	14378793	2L_14378793_SNP [dm3] 2L_14378793_SNP [dm6]	A	T	6.440e^-4	0.921	UTR_3_PRIME ppk
3R	20374855	3R_20374855_SNP [dm3] 3R_24549133_SNP [dm6]	T	C	6.443e^-4	0.921	UTR_5_PRIME Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z
3L	9602825	3L_9602825_SNP [dm3] 3L_9609725_SNP [dm6]	G	A	6.450e^-4	0.921	SYNONYMOUS_CODING CG3280
X	15042052	X_15042052_SNP [dm3] X_15148019_SNP [dm6]	G	A	6.459e^-4	0.921	INTRON CG9095
X	15042058	X_15042058_DEL [dm3] X_15148025_DEL [dm6]	AGTCTGCGCA	A	6.459e^-4	0.921	INTRON CG9095
X	15042089	X_15042089_SNP [dm3] X_15148056_SNP [dm6]	C	G	6.459e^-4	0.921	INTRON CG9095
2L	15034911	2L_15034911_SNP [dm3] 2L_15034911_SNP [dm6]	T	A	6.468e^-4	0.921	UPSTREAM yellow-c DOWNSTREAM GABA-B-R1 INTERGENIC
2R	1088932	2R_1088932_SNP [dm3] 2R_5201427_SNP [dm6]	T	C	6.474e^-4	0.921	INTRON Nipped-A
3R	1146864	3R_1146864_SNP [dm3] 3R_5321142_SNP [dm6]	A	C	6.476e^-4	0.921	INTRON mtd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	25664853	3R_25664853_SNP [dm3] 3R_29839131_SNP [dm6]	C	T	6.483e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_inv
3L	2673135	3L_2673135_SNP [dm3] 3L_2673135_SNP [dm6]	G	C	6.484e^-4	0.921	SYNONYMOUS_CODING Fife
3R	15448961	3R_15448961_SNP [dm3] 3R_19623239_SNP [dm6]	C	T	6.489e^-4	0.921	INTRON CG6231	TF binding site BDTNP1_TFBS_dl
3R	7381644	3R_7381644_SNP [dm3] 3R_11555922_SNP [dm6]	T	G	6.492e^-4	0.921	INTERGENIC
2R	20100623	2R_20100623_SNP [dm3] 2R_24213100_SNP [dm6]	T	C	6.497e^-4	0.921	UTR_3_PRIME CG30419
2R	18986542	2R_18986542_SNP [dm3] 2R_23099019_SNP [dm6]	G	A	6.499e^-4	0.921	INTERGENIC
3R	26700729	3R_26700729_SNP [dm3] 3R_30875007_SNP [dm6]	G	A	6.500e^-4	0.921	SYNONYMOUS_CODING CG15546	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9257085	2L_9257085_SNP [dm3] 2L_9257085_SNP [dm6]	C	A	6.504e^-4	0.921	UTR_5_PRIME Ggamma30A INTRON Ggamma30A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	13910490	3L_13910490_SNP [dm3] 3L_13917390_SNP [dm6]	A	G	6.505e^-4	0.921	INTRON Rgl
3R	25318387	3R_25318387_SNP [dm3] 3R_29492665_SNP [dm6]	T	G	6.528e^-4	0.921	SYNONYMOUS_CODING CG2310	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	3886646	3L_3886646_SNP [dm3] 3L_3886646_SNP [dm6]	A	G	6.566e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3886692	3L_3886692_SNP [dm3] 3L_3886692_SNP [dm6]	A	C	6.566e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3886694	3L_3886694_SNP [dm3] 3L_3886694_SNP [dm6]	T	C	6.566e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3L	3886703	3L_3886703_SNP [dm3] 3L_3886703_SNP [dm6]	G	A	6.566e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
X	16640457	X_16640457_SNP [dm3] X_16746424_SNP [dm6]	T	C	6.570e^-4	0.921	UPSTREAM CG9634 INTRON CG9634
3L	16545312	3L_16545312_INS [dm3] 3L_16552212_INS [dm6]	A	ACAATAGT	6.578e^-4	0.921	INTERGENIC
X	4695066	X_4695066_SNP [dm3] X_4801033_SNP [dm6]	T	C	6.582e^-4	0.921	NON_SYNONYMOUS_CODING CG2861
3L	2682188	3L_2682188_SNP [dm3] 3L_2682188_SNP [dm6]	C	G	6.585e^-4	0.921	INTRON Fife
X	5452702	X_5452702_SNP [dm3] X_5558669_SNP [dm6]	G	T	6.585e^-4	0.921	INTRON Vsx2
3R	24885359	3R_24885359_SNP [dm3] 3R_29059637_SNP [dm6]	T	C	6.587e^-4	0.921	UTR_3_PRIME Cul5 DOWNSTREAM Sirt7
X	8642550	X_8642550_SNP [dm3] X_8748517_SNP [dm6]	G	A	6.591e^-4	0.921	INTERGENIC
3R	968476	3R_968476_INS [dm3] 3R_5142754_INS [dm6]	A	ATAA	6.593e^-4	0.921	INTERGENIC
3R	17203155	3R_17203155_SNP [dm3] 3R_21377433_SNP [dm6]	C	T	6.595e^-4	0.921	UPSTREAM mod_mdg4_ INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	7199817	2L_7199817_SNP [dm3] 2L_7199817_SNP [dm6]	A	T	6.616e^-4	0.921	INTRON CG4502
3R	6191554	3R_6191554_SNP [dm3] 3R_10365832_SNP [dm6]	C	T	6.619e^-4	0.921	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	1587639	3R_1587639_SNP [dm3] 3R_5761917_SNP [dm6]	T	A	6.626e^-4	0.921	INTRON CG2082
2L	14004472	2L_14004472_SNP [dm3] 2L_14004472_SNP [dm6]	T	G	6.626e^-4	0.921	INTERGENIC
3L	15986673	3L_15986673_SNP [dm3] 3L_15993573_SNP [dm6]	G	A	6.629e^-4	0.921	UTR_3_PRIME CG5830
3L	12621916	3L_12621916_SNP [dm3] 3L_12628816_SNP [dm6]	G	A	6.634e^-4	0.921	INTRON CR32111
3L	19419831	3L_19419831_SNP [dm3] 3L_19426731_SNP [dm6]	G	A	6.640e^-4	0.921	INTERGENIC
3L	3326012	3L_3326012_SNP [dm3] 3L_3326012_SNP [dm6]	C	A	6.649e^-4	0.921	UTR_5_PRIME CG11526 UPSTREAM PHGPx & 1 other INTRON CG11526	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3R	17354382	3R_17354382_SNP [dm3] 3R_21528660_SNP [dm6]	A	C	6.667e^-4	0.921	DOWNSTREAM CG7956 INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	22436681	3R_22436681_SNP [dm3] 3R_26610959_SNP [dm6]	G	T	6.675e^-4	0.921	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	744829	3L_744829_SNP [dm3] 3L_744829_SNP [dm6]	G	C	6.680e^-4	0.921	INTRON hng3	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8241871	2L_8241871_SNP [dm3] 2L_8241871_SNP [dm6]	T	G	6.689e^-4	0.921	UPSTREAM CR43262 & 2 others INTERGENIC
3L	7277067	3L_7277067_SNP [dm3] 3L_7283967_SNP [dm6]	G	C	6.692e^-4	0.921	INTRON unc-13-4A
3R	19050387	3R_19050387_SNP [dm3] 3R_23224665_SNP [dm6]	T	C	6.723e^-4	0.921	INTRON cnc
3R	19050403	3R_19050403_SNP [dm3] 3R_23224681_SNP [dm6]	T	A	6.723e^-4	0.921	INTRON cnc
2L	7587476	2L_7587476_SNP [dm3] 2L_7587476_SNP [dm6]	C	A	6.724e^-4	0.921	INTERGENIC
2R	14573354	2R_14573354_SNP [dm3] 2R_18685849_SNP [dm6]	A	T	6.750e^-4	0.921	SYNONYMOUS_CODING CG44433	TF binding site mE1_TFBS_chinmo
2L	4672101	2L_4672101_SNP [dm3] 2L_4672101_SNP [dm6]	G	T	6.754e^-4	0.921	INTERGENIC
3R	7381457	3R_7381457_SNP [dm3] 3R_11555735_SNP [dm6]	G	A	6.769e^-4	0.921	DOWNSTREAM CG14708 INTERGENIC
3R	7381459	3R_7381459_SNP [dm3] 3R_11555737_SNP [dm6]	C	G	6.769e^-4	0.921	DOWNSTREAM CG14708 INTERGENIC
2L	9779263	2L_9779263_SNP [dm3] 2L_9779263_SNP [dm6]	C	A	6.773e^-4	0.921	INTERGENIC
X	4652387	X_4652387_SNP [dm3] X_4758354_SNP [dm6]	T	G	6.777e^-4	0.921	INTERGENIC
X	12320021	X_12320021_SNP [dm3] X_12425988_SNP [dm6]	A	C	6.792e^-4	0.921	INTERGENIC

By genomic position
Variant impact
Gene name

mn_PhototaxLight_wk1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results