DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.152e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1716 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	17026168	X_17026168_SNP [dm3] X_17132135_SNP [dm6]	C	G	1.538e^-6	0.709	INTRON CG5004
X	17026170	X_17026170_SNP [dm3] X_17132137_SNP [dm6]	G	A	1.538e^-6	0.709	INTRON CG5004
2R	15916550	2R_15916550_SNP [dm3] 2R_20029045_SNP [dm6]	A	T	1.560e^-6	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15916572	2R_15916572_SNP [dm3] 2R_20029067_SNP [dm6]	T	C	1.560e^-6	0.709	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16733760	2R_16733760_SNP [dm3] 2R_20846255_SNP [dm6]	A	G	3.244e^-6	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	17026183	X_17026183_DEL [dm3] X_17132150_DEL [dm6]	AC	A	6.414e^-6	0.963	INTRON CG5004
3L	3139000	3L_3139000_SNP [dm3] 3L_3139000_SNP [dm6]	T	G	7.192e^-6	0.963	INTRON CG11537
X	14757352	X_14757352_DEL [dm3] X_14863319_DEL [dm6]	CT	C	8.684e^-6	0.963	UTR_3_PRIME CG9518 INTRON Flo2
2L	12737682	2L_12737682_SNP [dm3] 2L_12737682_SNP [dm6]	T	C	9.182e^-6	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
2L	12737835	2L_12737835_SNP [dm3] 2L_12737835_SNP [dm6]	G	A	9.182e^-6	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
3L	13188469	3L_13188469_SNP [dm3] 3L_13195369_SNP [dm6]	A	G	1.197e^-5	0.963	INTERGENIC
2L	2344474	2L_2344474_SNP [dm3] 2L_2344474_SNP [dm6]	C	T	1.418e^-5	0.963	INTRON CG9967 & 1 other
3L	9742225	3L_9742225_SNP [dm3] 3L_9749125_SNP [dm6]	A	T	1.473e^-5	0.963	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7814710	2R_7814710_SNP [dm3] 2R_11927205_SNP [dm6]	T	C	1.938e^-5	0.963	INTERGENIC
X	14757350	X_14757350_SNP [dm3] X_14863317_SNP [dm6]	T	A	1.957e^-5	0.963	UTR_3_PRIME CG9518 INTRON Flo2
3L	13932256	3L_13932256_SNP [dm3] 3L_13939156_SNP [dm6]	C	G	2.106e^-5	0.963	UPSTREAM CG32137 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	12591666	3L_12591666_SNP [dm3] 3L_12598566_SNP [dm6]	A	T	2.233e^-5	0.963	INTERGENIC
2L	2344440	2L_2344440_SNP [dm3] 2L_2344440_SNP [dm6]	G	A	2.296e^-5	0.963	INTRON CG9967 & 1 other
2L	12738105	2L_12738105_SNP [dm3] 2L_12738105_SNP [dm6]	A	G	2.541e^-5	0.963	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12378547	X_12378547_SNP [dm3] X_12484514_SNP [dm6]	C	T	2.627e^-5	0.963	INTERGENIC
X	12378587	X_12378587_SNP [dm3] X_12484554_SNP [dm6]	C	A	2.627e^-5	0.963	INTERGENIC
2R	9583037	2R_9583037_SNP [dm3] 2R_13695532_SNP [dm6]	A	T	2.779e^-5	0.963	INTRON fas
3L	1241922	3L_1241922_SNP [dm3] 3L_1241922_SNP [dm6]	A	C	2.938e^-5	0.963	UTR_3_PRIME CG9194 & 1 other
2R	1006196	2R_1006196_SNP [dm3] 2R_5118691_SNP [dm6]	A	C	3.185e^-5	0.963	INTRON gus	transposable element FlyBase
3L	12591668	3L_12591668_SNP [dm3] 3L_12598568_SNP [dm6]	T	C	3.600e^-5	0.963	INTERGENIC
2L	16609854	2L_16609854_SNP [dm3] 2L_16609854_SNP [dm6]	C	T	3.762e^-5	0.963	SYNONYMOUS_CODING CG4631 INTRON CG42389
2L	10018285	2L_10018285_SNP [dm3] 2L_10018285_SNP [dm6]	A	G	3.772e^-5	0.963	UPSTREAM CG13131 INTERGENIC
X	10865111	X_10865111_SNP [dm3] X_10971078_SNP [dm6]	T	G	3.892e^-5	0.963	INTRON CG42339
2L	3613697	2L_3613697_SNP [dm3] 2L_3613697_SNP [dm6]	T	C	3.897e^-5	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12211568	2L_12211568_SNP [dm3] 2L_12211568_SNP [dm6]	G	A	3.905e^-5	0.963	INTRON aret
2L	12713688	2L_12713688_SNP [dm3] 2L_12713688_SNP [dm6]	C	T	3.943e^-5	0.963	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
X	3105837	X_3105837_SNP [dm3] X_3211804_SNP [dm6]	C	G	4.000e^-5	0.963	INTRON dnc
2L	16667395	2L_16667395_SNP [dm3] 2L_16667395_SNP [dm6]	T	A	4.146e^-5	0.963	INTRON Trpgamma
3L	12591664	3L_12591664_SNP [dm3] 3L_12598564_SNP [dm6]	G	A	4.378e^-5	0.963	INTERGENIC
3L	12591671	3L_12591671_INS [dm3] 3L_12598571_INS [dm6]	A	AT	4.378e^-5	0.963	INTERGENIC
3L	8775285	3L_8775285_SNP [dm3] 3L_8782185_SNP [dm6]	G	C	4.765e^-5	0.963	INTRON Fhos
3L	8775291	3L_8775291_SNP [dm3] 3L_8782191_SNP [dm6]	T	G	4.765e^-5	0.963	INTRON Fhos
3L	7835093	3L_7835093_SNP [dm3] 3L_7841993_SNP [dm6]	G	T	5.033e^-5	0.963	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3L	7090853	3L_7090853_SNP [dm3] 3L_7097753_SNP [dm6]	A	G	5.079e^-5	0.963	INTRON form3
2L	5923096	2L_5923096_SNP [dm3] 2L_5923096_SNP [dm6]	C	T	5.269e^-5	0.963	UTR_3_PRIME CG9016 DOWNSTREAM bchs
2L	3801234	2L_3801234_SNP [dm3] 2L_3801234_SNP [dm6]	C	A	5.504e^-5	0.963	SYNONYMOUS_CODING CG3921
2L	2854895	2L_2854895_SNP [dm3] 2L_2854895_SNP [dm6]	T	A	6.094e^-5	0.963	UTR_5_PRIME CG3104 INTRON CG3104
X	9973343	X_9973343_SNP [dm3] X_10079310_SNP [dm6]	A	G	6.123e^-5	0.963	SYNONYMOUS_CODING ZAP3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	4927051	3R_4927051_SNP [dm3] 3R_9101329_SNP [dm6]	T	C	6.291e^-5	0.963	INTRON pum
3L	8770562	3L_8770562_SNP [dm3] 3L_8777462_SNP [dm6]	T	C	6.295e^-5	0.963	INTRON Fhos
3L	7732289	3L_7732289_SNP [dm3] 3L_7739189_SNP [dm6]	C	T	6.429e^-5	0.963	INTRON CG32373 & 1 other
2L	6337467	2L_6337467_SNP [dm3] 2L_6337467_SNP [dm6]	C	T	6.476e^-5	0.963	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3681226	2L_3681226_SNP [dm3] 2L_3681226_SNP [dm6]	A	T	6.519e^-5	0.963	INTRON CG34340
2L	4683650	2L_4683650_SNP [dm3] 2L_4683650_SNP [dm6]	C	T	6.606e^-5	0.963	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2R	6243148	2R_6243148_SNP [dm3] 2R_10355643_SNP [dm6]	C	T	6.654e^-5	0.963	SYNONYMOUS_CODING CG43397 UTR_5_PRIME CG12902 UPSTREAM CG12902 DOWNSTREAM CG42733 INTRON CG42732
3R	3505007	3R_3505007_SNP [dm3] 3R_7679285_SNP [dm6]	C	G	6.751e^-5	0.963	INTRON Nlg1
2R	19894953	2R_19894953_SNP [dm3] 2R_24007430_SNP [dm6]	G	C	6.781e^-5	0.963	INTRON Unc-89
2L	16674798	2L_16674798_SNP [dm3] 2L_16674798_SNP [dm6]	C	T	7.284e^-5	0.963	INTRON Trpgamma
2L	12211557	2L_12211557_SNP [dm3] 2L_12211557_SNP [dm6]	T	G	7.483e^-5	0.963	INTRON aret
2R	1026920	2R_1026920_SNP [dm3] 2R_5139415_SNP [dm6]	C	T	7.536e^-5	0.963	INTERGENIC	TF binding site mE1_TFBS_cad
2R	14912458	2R_14912458_SNP [dm3] 2R_19024953_SNP [dm6]	T	C	7.549e^-5	0.963	NON_SYNONYMOUS_CODING 5-HT1B	TF binding site mE1_TFBS_cad
2L	12737189	2L_12737189_SNP [dm3] 2L_12737189_SNP [dm6]	A	T	7.693e^-5	0.963	INTRON MRP
2R	7571777	2R_7571777_SNP [dm3] 2R_11684272_SNP [dm6]	T	C	7.744e^-5	0.963	UTR_3_PRIME CG13196 INTRON Buffy
2R	9202380	2R_9202380_SNP [dm3] 2R_13314875_SNP [dm6]	A	T	7.877e^-5	0.963	INTERGENIC
2R	9202442	2R_9202442_SNP [dm3] 2R_13314937_SNP [dm6]	T	C	7.877e^-5	0.963	INTERGENIC
2R	4465787	2R_4465787_SNP [dm3] 2R_8578282_SNP [dm6]	T	C	8.018e^-5	0.963	START_GAINED CG42326 UTR_5_PRIME CG42326 INTRON CG42326
2R	4465788	2R_4465788_SNP [dm3] 2R_8578283_SNP [dm6]	A	C	8.018e^-5	0.963	UTR_5_PRIME CG42326 INTRON CG42326
3L	11625603	3L_11625603_SNP [dm3] 3L_11632503_SNP [dm6]	A	G	8.037e^-5	0.963	DOWNSTREAM CR45158 INTRON CG32091
X	20796508	X_20796508_SNP [dm3] X_20925481_SNP [dm6]	C	A	8.191e^-5	0.963	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4699244	2L_4699244_SNP [dm3] 2L_4699244_SNP [dm6]	C	T	8.285e^-5	0.963	INTRON CG34351
2R	13040626	2R_13040626_SNP [dm3] 2R_17153121_SNP [dm6]	A	G	8.292e^-5	0.963	INTERGENIC
X	16749075	X_16749075_SNP [dm3] X_16855042_SNP [dm6]	C	G	8.450e^-5	0.963	INTRON CG13003
3R	4927446	3R_4927446_SNP [dm3] 3R_9101724_SNP [dm6]	T	A	8.499e^-5	0.963	INTRON pum
3L	2961370	3L_2961370_SNP [dm3] 3L_2961370_SNP [dm6]	G	C	8.562e^-5	0.963	UPSTREAM Or63a & 1 other INTERGENIC
X	17026070	X_17026070_SNP [dm3] X_17132037_SNP [dm6]	A	T	8.571e^-5	0.963	INTRON CG5004
2L	13904271	2L_13904271_SNP [dm3] 2L_13904271_SNP [dm6]	T	C	8.594e^-5	0.963	UTR_5_PRIME Smg5 UPSTREAM Smg5 INTRON Smg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3L	13188518	3L_13188518_SNP [dm3] 3L_13195418_SNP [dm6]	T	G	8.768e^-5	0.963	INTERGENIC
2L	4683932	2L_4683932_SNP [dm3] 2L_4683932_SNP [dm6]	C	T	8.918e^-5	0.963	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	13188604	3L_13188604_SNP [dm3] 3L_13195504_SNP [dm6]	C	T	9.210e^-5	0.963	INTERGENIC
2L	12211577	2L_12211577_SNP [dm3] 2L_12211577_SNP [dm6]	G	A	9.267e^-5	0.963	INTRON aret
3L	12284593	3L_12284593_SNP [dm3] 3L_12291493_SNP [dm6]	A	G	9.310e^-5	0.963	SYNONYMOUS_CODING CG4328	TF binding site BDTNP1_TFBS_prd
2L	3401690	2L_3401690_SNP [dm3] 2L_3401690_SNP [dm6]	G	A	9.400e^-5	0.963	INTERGENIC
2L	19190943	2L_19190943_SNP [dm3] 2L_19190943_SNP [dm6]	C	A	1.012e^-4	0.963	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	20148992	2R_20148992_SNP [dm3] 2R_24261469_SNP [dm6]	C	T	1.029e^-4	0.963	UTR_5_PRIME CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20149543	2R_20149543_SNP [dm3] 2R_24262020_SNP [dm6]	A	G	1.029e^-4	0.963	SYNONYMOUS_CODING CG3376	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10842680	3L_10842680_DEL [dm3] 3L_10849580_DEL [dm6]	TACA	T	1.029e^-4	0.963	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	19700905	2L_19700905_SNP [dm3] 2L_19700905_SNP [dm6]	A	T	1.034e^-4	0.963	NON_SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16674858	2L_16674858_SNP [dm3] 2L_16674858_SNP [dm6]	T	A	1.034e^-4	0.963	INTRON Trpgamma
2R	17373110	2R_17373110_SNP [dm3] 2R_21485605_SNP [dm6]	A	G	1.050e^-4	0.963	SYNONYMOUS_CODING Sara	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	15958149	2L_15958149_SNP [dm3] 2L_15958149_SNP [dm6]	A	T	1.051e^-4	0.963	INTRON beat-Ib & 1 other
2L	3801172	2L_3801172_SNP [dm3] 2L_3801172_SNP [dm6]	A	T	1.052e^-4	0.963	INTRON CG3921
3L	13188529	3L_13188529_DEL [dm3] 3L_13195429_DEL [dm6]	GG	T	1.063e^-4	0.963	INTERGENIC
3R	14437267	3R_14437267_SNP [dm3] 3R_18611545_SNP [dm6]	T	A	1.066e^-4	0.963	INTRON qin & 1 other
2L	2344099	2L_2344099_DEL [dm3] 2L_2344099_DEL [dm6]	GT	G	1.071e^-4	0.963	INTRON CG9967 & 1 other
X	17026074	X_17026074_SNP [dm3] X_17132041_SNP [dm6]	A	T	1.098e^-4	0.963	INTRON CG5004
2L	2344089	2L_2344089_SNP [dm3] 2L_2344089_SNP [dm6]	G	A	1.117e^-4	0.963	INTRON CG9967 & 1 other
3L	12591726	3L_12591726_SNP [dm3] 3L_12598626_SNP [dm6]	A	T	1.130e^-4	0.963	INTERGENIC
2L	5924126	2L_5924126_SNP [dm3] 2L_5924126_SNP [dm6]	A	T	1.130e^-4	0.963	UPSTREAM CG9016 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15524260	2R_15524260_SNP [dm3] 2R_19636755_SNP [dm6]	G	A	1.130e^-4	0.963	SYNONYMOUS_CODING CG18367 UPSTREAM mir-4983 & 1 other DOWNSTREAM CG42753	TF binding site mE1_TFBS_cad
2R	7703301	2R_7703301_SNP [dm3] 2R_11815796_SNP [dm6]	C	G	1.155e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
2L	11319295	2L_11319295_SNP [dm3] 2L_11319295_SNP [dm6]	T	A	1.163e^-4	0.963	DOWNSTREAM CR44583 INTERGENIC
2L	3325516	2L_3325516_SNP [dm3] 2L_3325516_SNP [dm6]	T	G	1.169e^-4	0.963	INTRON CG33281
X	14669817	X_14669817_SNP [dm3] X_14775784_SNP [dm6]	G	T	1.175e^-4	0.963	SYNONYMOUS_CODING CG5334 UPSTREAM CG5347
2R	20146745	2R_20146745_SNP [dm3] 2R_24259222_SNP [dm6]	T	C	1.178e^-4	0.963	INTRON CG3376
3L	6325862	3L_6325862_SNP [dm3] 3L_6332762_SNP [dm6]	A	G	1.194e^-4	0.963	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_chinmo
2R	18994368	2R_18994368_SNP [dm3] 2R_23106845_SNP [dm6]	G	A	1.209e^-4	0.963	INTERGENIC
3L	19017298	3L_19017298_SNP [dm3] 3L_19024198_SNP [dm6]	G	A	1.233e^-4	0.963	INTRON nkd
2R	3863607	2R_3863607_SNP [dm3] 2R_7976102_SNP [dm6]	G	C	1.240e^-4	0.963	SYNONYMOUS_CODING ACC
3R	3402277	3R_3402277_SNP [dm3] 3R_7576555_SNP [dm6]	C	T	1.246e^-4	0.963	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	8770557	3L_8770557_SNP [dm3] 3L_8777457_SNP [dm6]	A	G	1.255e^-4	0.963	INTRON Fhos
3L	1580287	3L_1580287_SNP [dm3] 3L_1580287_SNP [dm6]	A	T	1.264e^-4	0.963	INTRON CG13917
2R	19179273	2R_19179273_SNP [dm3] 2R_23291750_SNP [dm6]	T	A	1.267e^-4	0.963	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	5923509	2L_5923509_SNP [dm3] 2L_5923509_SNP [dm6]	C	A	1.288e^-4	0.963	DOWNSTREAM bchs INTRON CG9016	TF binding site BDTNP1_TFBS_dl
2L	5923512	2L_5923512_SNP [dm3] 2L_5923512_SNP [dm6]	T	A	1.288e^-4	0.963	DOWNSTREAM bchs INTRON CG9016	TF binding site BDTNP1_TFBS_dl
3L	20176476	3L_20176476_SNP [dm3] 3L_20183376_SNP [dm6]	A	G	1.295e^-4	0.963	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6524669	2R_6524669_SNP [dm3] 2R_10637164_SNP [dm6]	A	G	1.313e^-4	0.963	INTRON CG11883
2L	11319292	2L_11319292_INS [dm3] 2L_11319292_INS [dm6]	T	TGCAATG	1.329e^-4	0.963	DOWNSTREAM CR44583 INTERGENIC
2L	7967479	2L_7967479_SNP [dm3] 2L_7967479_SNP [dm6]	A	G	1.339e^-4	0.963	INTRON Snoo
3L	12434229	3L_12434229_SNP [dm3] 3L_12441129_SNP [dm6]	T	C	1.345e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13273437	2L_13273437_SNP [dm3] 2L_13273437_SNP [dm6]	T	A	1.354e^-4	0.963	INTRON CG44085
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	1.360e^-4	0.963	INTERGENIC
X	12378510	X_12378510_SNP [dm3] X_12484477_SNP [dm6]	C	G	1.377e^-4	0.963	INTERGENIC
X	6079068	X_6079068_SNP [dm3] X_6185035_SNP [dm6]	A	T	1.388e^-4	0.963	INTRON Ca-alpha1T
3R	21384778	3R_21384778_SNP [dm3] 3R_25559056_SNP [dm6]	G	A	1.398e^-4	0.963	INTRON msi
X	2899615	X_2899615_SNP [dm3] X_3005582_SNP [dm6]	A	C	1.398e^-4	0.963	INTRON kirre
3L	6118686	3L_6118686_SNP [dm3] 3L_6125586_SNP [dm6]	G	T	1.404e^-4	0.963	NON_SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	6118693	3L_6118693_SNP [dm3] 3L_6125593_SNP [dm6]	G	A	1.404e^-4	0.963	SYNONYMOUS_CODING l_3_mbn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	11574915	3L_11574915_SNP [dm3] 3L_11581815_SNP [dm6]	A	C	1.405e^-4	0.963	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
3L	9765644	3L_9765644_SNP [dm3] 3L_9772544_SNP [dm6]	T	A	1.406e^-4	0.963	INTRON CG8177
3R	10504939	3R_10504939_SNP [dm3] 3R_14679217_SNP [dm6]	G	C	1.414e^-4	0.963	INTRON Meltrin	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	19245354	2L_19245354_SNP [dm3] 2L_19245354_SNP [dm6]	T	C	1.431e^-4	0.963	INTERGENIC
2R	2123862	2R_2123862_SNP [dm3] 2R_6236357_SNP [dm6]	C	A	1.433e^-4	0.963	INTRON bin3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2R	19001675	2R_19001675_SNP [dm3] 2R_23114152_SNP [dm6]	T	A	1.437e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001676	2R_19001676_SNP [dm3] 2R_23114153_SNP [dm6]	T	A	1.437e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001679	2R_19001679_SNP [dm3] 2R_23114156_SNP [dm6]	T	C	1.437e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14507856	X_14507856_SNP [dm3] X_14613823_SNP [dm6]	A	G	1.449e^-4	0.963	INTRON NetA
3L	9936552	3L_9936552_SNP [dm3] 3L_9943452_SNP [dm6]	G	A	1.460e^-4	0.963	INTRON CG34356
2L	7481910	2L_7481910_SNP [dm3] 2L_7481910_SNP [dm6]	A	G	1.465e^-4	0.963	SYNONYMOUS_CODING Ziz
3R	3018885	3R_3018885_SNP [dm3] 3R_7193163_SNP [dm6]	A	T	1.479e^-4	0.963	INTRON lap
2R	6872578	2R_6872578_SNP [dm3] 2R_10985073_SNP [dm6]	A	T	1.503e^-4	0.963	INTRON luna
2R	6109179	2R_6109179_SNP [dm3] 2R_10221674_SNP [dm6]	C	T	1.544e^-4	0.963	INTRON Hr46 & 1 other
3R	17112170	3R_17112170_SNP [dm3] 3R_21286448_SNP [dm6]	A	G	1.549e^-4	0.963	INTRON SIFaR	TF binding site mE1_TFBS_cad
3L	13969855	3L_13969855_SNP [dm3] 3L_13976755_SNP [dm6]	T	C	1.555e^-4	0.963	SYNONYMOUS_CODING Hsc70-1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2L	5922781	2L_5922781_SNP [dm3] 2L_5922781_SNP [dm6]	T	C	1.564e^-4	0.963	DOWNSTREAM CG9016 & 1 other INTERGENIC
3L	1281675	3L_1281675_SNP [dm3] 3L_1281675_SNP [dm6]	C	A	1.564e^-4	0.963	INTRON CG32333
2L	9600758	2L_9600758_SNP [dm3] 2L_9600758_SNP [dm6]	C	A	1.565e^-4	0.963	NON_SYNONYMOUS_CODING CG4382	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	12663409	X_12663409_SNP [dm3] X_12769376_SNP [dm6]	G	A	1.583e^-4	0.963	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
2R	1361370	2R_1361370_SNP [dm3] 2R_5473865_SNP [dm6]	T	C	1.589e^-4	0.963	INTRON CG30440	transposable element FlyBase
2L	13329772	2L_13329772_SNP [dm3] 2L_13329772_SNP [dm6]	G	A	1.596e^-4	0.963	INTRON CG43778
3R	17008197	3R_17008197_SNP [dm3] 3R_21182475_SNP [dm6]	G	A	1.599e^-4	0.963	INTRON SNF4Agamma
2L	12737890	2L_12737890_SNP [dm3] 2L_12737890_SNP [dm6]	T	C	1.602e^-4	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
X	17026100	X_17026100_SNP [dm3] X_17132067_SNP [dm6]	C	G	1.605e^-4	0.963	INTRON CG5004
2L	2163095	2L_2163095_SNP [dm3] 2L_2163095_SNP [dm6]	G	A	1.609e^-4	0.963	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_sens mE1_TFBS_Trl
3L	5483986	3L_5483986_SNP [dm3] 3L_5490886_SNP [dm6]	T	A	1.622e^-4	0.963	INTERGENIC
3R	9869468	3R_9869468_SNP [dm3] 3R_14043746_SNP [dm6]	C	A	1.624e^-4	0.963	DOWNSTREAM tRNA:S2b:88A INTERGENIC
2R	20778726	2R_20778726_SNP [dm3] 2R_24891203_SNP [dm6]	G	A	1.625e^-4	0.963	UPSTREAM NaCP60E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6405346	2R_6405346_SNP [dm3] 2R_10517841_SNP [dm6]	T	A	1.633e^-4	0.963	DOWNSTREAM lola INTRON lola
2L	6196359	2L_6196359_DEL [dm3] 2L_6196359_DEL [dm6]	GG	G	1.635e^-4	0.963	INTRON CG34380
2L	19651830	2L_19651830_SNP [dm3] 2L_19651830_SNP [dm6]	G	T	1.636e^-4	0.963	INTRON Lar
2R	6405471	2R_6405471_SNP [dm3] 2R_10517966_SNP [dm6]	C	T	1.647e^-4	0.963	NON_SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola
2R	15917101	2R_15917101_SNP [dm3] 2R_20029596_SNP [dm6]	T	C	1.661e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
3L	13188511	3L_13188511_SNP [dm3] 3L_13195411_SNP [dm6]	A	C	1.667e^-4	0.963	INTERGENIC
3L	2722466	3L_2722466_SNP [dm3] 3L_2722466_SNP [dm6]	G	A	1.669e^-4	0.963	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16219638	X_16219638_SNP [dm3] X_16325605_SNP [dm6]	A	C	1.671e^-4	0.963	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	12737755	2L_12737755_SNP [dm3] 2L_12737755_SNP [dm6]	C	A	1.675e^-4	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
2L	5920193	2L_5920193_DEL [dm3] 2L_5920193_DEL [dm6]	TTTGCT	T	1.676e^-4	0.963	INTRON bchs	TF binding site mE1_TFBS_cad
2R	7550372	2R_7550372_SNP [dm3] 2R_11662867_SNP [dm6]	G	A	1.678e^-4	0.963	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	13922786	3R_13922786_SNP [dm3] 3R_18097064_SNP [dm6]	A	C	1.702e^-4	0.963	INTRON sr
2R	7486700	2R_7486700_SNP [dm3] 2R_11599195_SNP [dm6]	T	G	1.717e^-4	0.963	INTRON tou	TF binding site BDTNP1_TFBS_dl
3L	3098453	3L_3098453_SNP [dm3] 3L_3098453_SNP [dm6]	A	C	1.724e^-4	0.963	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3L	19079372	3L_19079372_SNP [dm3] 3L_19086272_SNP [dm6]	C	A	1.730e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	7775247	X_7775247_SNP [dm3] X_7881214_SNP [dm6]	T	C	1.730e^-4	0.963	NON_SYNONYMOUS_CODING Ir7e DOWNSTREAM Ir7f
2L	19700914	2L_19700914_SNP [dm3] 2L_19700914_SNP [dm6]	A	G	1.737e^-4	0.963	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20464835	3R_20464835_SNP [dm3] 3R_24639113_SNP [dm6]	C	T	1.739e^-4	0.963	INTRON puf
2R	6524846	2R_6524846_SNP [dm3] 2R_10637341_SNP [dm6]	G	C	1.747e^-4	0.963	INTRON CG11883
X	16859820	X_16859820_SNP [dm3] X_16965787_SNP [dm6]	C	T	1.772e^-4	0.963	INTRON CG9086	TF binding site BDTNP1_TFBS_twi
3L	3238735	3L_3238735_SNP [dm3] 3L_3238735_SNP [dm6]	T	G	1.779e^-4	0.963	SYNONYMOUS_CODING CG17746
2R	1783485	2R_1783485_SNP [dm3] 2R_5895980_SNP [dm6]	A	G	1.780e^-4	0.963	INTRON CG43366	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19001683	2R_19001683_SNP [dm3] 2R_23114160_SNP [dm6]	T	A	1.783e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2987696	3R_2987696_SNP [dm3] 3R_7161974_SNP [dm6]	C	A	1.825e^-4	0.963	UPSTREAM sas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19238745	2L_19238745_SNP [dm3] 2L_19238745_SNP [dm6]	C	T	1.831e^-4	0.963	INTERGENIC
2L	7220259	2L_7220259_SNP [dm3] 2L_7220259_SNP [dm6]	A	T	1.840e^-4	0.963	UPSTREAM CR44989 & 1 other DOWNSTREAM ico INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2L	7220261	2L_7220261_SNP [dm3] 2L_7220261_SNP [dm6]	A	G	1.840e^-4	0.963	UPSTREAM CR44989 & 1 other DOWNSTREAM ico INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	19079465	3L_19079465_DEL [dm3] 3L_19086365_DEL [dm6]	TT	T	1.859e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
X	7270540	X_7270540_SNP [dm3] X_7376507_SNP [dm6]	T	A	1.878e^-4	0.963	INTRON CG1677 & 1 other
X	7270570	X_7270570_SNP [dm3] X_7376537_SNP [dm6]	T	A	1.878e^-4	0.963	INTRON CG1677 & 1 other
2L	16620062	2L_16620062_SNP [dm3] 2L_16620062_SNP [dm6]	C	T	1.880e^-4	0.963	INTRON CG42389
2L	14746273	2L_14746273_SNP [dm3] 2L_14746273_SNP [dm6]	G	A	1.886e^-4	0.963	UPSTREAM CR45460 DOWNSTREAM CR45458 & 1 other INTERGENIC
3L	7712260	3L_7712260_SNP [dm3] 3L_7719160_SNP [dm6]	C	T	1.886e^-4	0.963	UPSTREAM CG12262 & 1 other INTRON CG32373
2L	14666840	2L_14666840_SNP [dm3] 2L_14666840_SNP [dm6]	G	T	1.886e^-4	0.963	INTRON osp
X	12255138	X_12255138_SNP [dm3] X_12361105_SNP [dm6]	T	C	1.887e^-4	0.963	INTERGENIC
2L	15247121	2L_15247121_SNP [dm3] 2L_15247121_SNP [dm6]	G	T	1.891e^-4	0.963	INTRON ZnT35C
2R	1026790	2R_1026790_SNP [dm3] 2R_5139285_SNP [dm6]	C	G	1.893e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	1026938	2R_1026938_SNP [dm3] 2R_5139433_SNP [dm6]	A	C	1.893e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad
2R	1027538	2R_1027538_SNP [dm3] 2R_5140033_SNP [dm6]	A	G	1.893e^-4	0.963	INTERGENIC
2R	1027734	2R_1027734_SNP [dm3] 2R_5140229_SNP [dm6]	T	C	1.893e^-4	0.963	INTERGENIC
2R	4904452	2R_4904452_SNP [dm3] 2R_9016947_SNP [dm6]	C	G	1.895e^-4	0.963	UTR_5_PRIME CG13744 UPSTREAM CG13747
X	13411327	X_13411327_SNP [dm3] X_13517294_SNP [dm6]	G	A	1.900e^-4	0.963	INTRON Neto
3R	21384771	3R_21384771_SNP [dm3] 3R_25559049_SNP [dm6]	C	G	1.917e^-4	0.963	INTRON msi
3R	21384782	3R_21384782_SNP [dm3] 3R_25559060_SNP [dm6]	C	T	1.917e^-4	0.963	INTRON msi
2R	7906136	2R_7906136_SNP [dm3] 2R_12018631_SNP [dm6]	A	T	1.918e^-4	0.963	INTRON otk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3238210	3L_3238210_SNP [dm3] 3L_3238210_SNP [dm6]	C	G	1.940e^-4	0.963	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
X	20447435	X_20447435_SNP [dm3] X_20576408_SNP [dm6]	T	G	1.940e^-4	0.963	INTERGENIC	transposable element FlyBase
2R	7066309	2R_7066309_SNP [dm3] 2R_11178804_SNP [dm6]	T	C	1.965e^-4	0.963	INTRON shn	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2239449	3L_2239449_SNP [dm3] 3L_2239449_SNP [dm6]	C	T	1.977e^-4	0.963	SYNONYMOUS_CODING ACXD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	2306198	X_2306198_SNP [dm3] X_2412165_SNP [dm6]	T	C	1.983e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2R	15289833	2R_15289833_SNP [dm3] 2R_19402328_SNP [dm6]	A	G	1.988e^-4	0.963	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	15390051	2R_15390051_SNP [dm3] 2R_19502546_SNP [dm6]	A	G	1.990e^-4	0.963	UPSTREAM CG11007 INTERGENIC
2R	13040495	2R_13040495_SNP [dm3] 2R_17152990_SNP [dm6]	T	C	1.993e^-4	0.963	INTERGENIC
3L	7281918	3L_7281918_SNP [dm3] 3L_7288818_SNP [dm6]	C	T	2.024e^-4	0.963	INTRON unc-13-4A
2L	10831182	2L_10831182_SNP [dm3] 2L_10831182_SNP [dm6]	T	C	2.026e^-4	0.963	INTRON Nos	TF binding site mE1_TFBS_chinmo
2L	5041556	2L_5041556_SNP [dm3] 2L_5041556_SNP [dm6]	G	A	2.036e^-4	0.963	DOWNSTREAM SP555 & 1 other INTRON CG31650
2R	13621627	2R_13621627_SNP [dm3] 2R_17734122_SNP [dm6]	C	T	2.036e^-4	0.963	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2R	17900460	2R_17900460_SNP [dm3] 2R_22012955_SNP [dm6]	T	C	2.036e^-4	0.963	INTRON CG34370
2R	17904243	2R_17904243_SNP [dm3] 2R_22016738_SNP [dm6]	T	C	2.036e^-4	0.963	INTRON CG34370
2R	19001164	2R_19001164_SNP [dm3] 2R_23113641_SNP [dm6]	A	T	2.036e^-4	0.963	EXON CR44782	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	19001585	2R_19001585_SNP [dm3] 2R_23114062_SNP [dm6]	T	A	2.036e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001703	2R_19001703_MNP [dm3] 2R_23114180_MNP [dm6]	GGC	TAG	2.036e^-4	0.963	EXON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001707	2R_19001707_SNP [dm3] 2R_23114184_SNP [dm6]	A	T	2.036e^-4	0.963	EXON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001710	2R_19001710_SNP [dm3] 2R_23114187_SNP [dm6]	T	A	2.036e^-4	0.963	EXON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19001712	2R_19001712_MNP [dm3] 2R_23114189_MNP [dm6]	GAC	ATA	2.036e^-4	0.963	EXON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20142685	3L_20142685_SNP [dm3] 3L_20149585_SNP [dm6]	C	G	2.036e^-4	0.963	DOWNSTREAM CG42674 INTERGENIC
3L	20176428	3L_20176428_SNP [dm3] 3L_20183328_SNP [dm6]	C	T	2.036e^-4	0.963	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20176475	3L_20176475_SNP [dm3] 3L_20183375_SNP [dm6]	T	A	2.036e^-4	0.963	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20201521	3L_20201521_SNP [dm3] 3L_20208421_SNP [dm6]	C	T	2.036e^-4	0.963	SYNONYMOUS_CODING CG6996	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20213165	3L_20213165_SNP [dm3] 3L_20220065_SNP [dm6]	G	C	2.036e^-4	0.963	NON_SYNONYMOUS_CODING CG6933 INTRON CG6933
3L	9005425	3L_9005425_SNP [dm3] 3L_9012325_SNP [dm6]	G	C	2.036e^-4	0.963	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4065032	3R_4065032_SNP [dm3] 3R_8239310_SNP [dm6]	A	G	2.036e^-4	0.963	SYNONYMOUS_CODING Ada2b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	20602548	3L_20602548_DEL [dm3] 3L_20609448_DEL [dm6]	AA	A	2.061e^-4	0.963	INTRON knrl
3L	7998640	3L_7998640_SNP [dm3] 3L_8005540_SNP [dm6]	G	A	2.062e^-4	0.963	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2L	17605716	2L_17605716_DEL [dm3] 2L_17605716_DEL [dm6]	TTT	T	2.067e^-4	0.963	DOWNSTREAM CR44412 INTERGENIC
X	12378441	X_12378441_INS [dm3] X_12484408_INS [dm6]	A	AA	2.067e^-4	0.963	INTERGENIC
2L	9438427	2L_9438427_SNP [dm3] 2L_9438427_SNP [dm6]	T	A	2.072e^-4	0.963	INTRON numb	TF binding site BDTNP1_TFBS_dl
3L	4685937	3L_4685937_SNP [dm3] 3L_4685937_SNP [dm6]	G	T	2.079e^-4	0.963	INTRON axo
2L	10822088	2L_10822088_SNP [dm3] 2L_10822088_SNP [dm6]	C	G	2.094e^-4	0.963	DOWNSTREAM CG17134 INTRON Nos
2R	10868591	2R_10868591_SNP [dm3] 2R_14981086_SNP [dm6]	C	A	2.095e^-4	0.963	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2L	20857113	2L_20857113_SNP [dm3] 2L_20857113_SNP [dm6]	G	A	2.099e^-4	0.963	UTR_3_PRIME twit & 1 other	TF binding site mE1_TFBS_HSA
2R	11223711	2R_11223711_SNP [dm3] 2R_15336206_SNP [dm6]	T	A	2.099e^-4	0.963	INTRON Hr51
2R	20146475	2R_20146475_SNP [dm3] 2R_24258952_SNP [dm6]	A	G	2.099e^-4	0.963	INTRON CG3376
2R	20146552	2R_20146552_SNP [dm3] 2R_24259029_SNP [dm6]	T	C	2.099e^-4	0.963	INTRON CG3376
2R	7571212	2R_7571212_SNP [dm3] 2R_11683707_SNP [dm6]	A	G	2.099e^-4	0.963	DOWNSTREAM CG13196 INTRON Buffy
2R	7571222	2R_7571222_SNP [dm3] 2R_11683717_SNP [dm6]	C	T	2.099e^-4	0.963	DOWNSTREAM CG13196 INTRON Buffy
3L	10604939	3L_10604939_SNP [dm3] 3L_10611839_SNP [dm6]	G	A	2.099e^-4	0.963	INTERGENIC
3L	19278357	3L_19278357_SNP [dm3] 3L_19285257_SNP [dm6]	A	G	2.099e^-4	0.963	SYNONYMOUS_CODING Gbs-76A
3L	19278414	3L_19278414_SNP [dm3] 3L_19285314_SNP [dm6]	G	A	2.099e^-4	0.963	SYNONYMOUS_CODING Gbs-76A
3R	24395536	3R_24395536_SNP [dm3] 3R_28569814_SNP [dm6]	T	G	2.099e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	4914626	3R_4914626_SNP [dm3] 3R_9088904_SNP [dm6]	T	A	2.099e^-4	0.963	INTRON pum
3L	8775331	3L_8775331_SNP [dm3] 3L_8782231_SNP [dm6]	C	T	2.109e^-4	0.963	INTRON Fhos
X	10045174	X_10045174_SNP [dm3] X_10151141_SNP [dm6]	A	T	2.113e^-4	0.963	INTRON CR44894
3L	14348919	3L_14348919_SNP [dm3] 3L_14355819_SNP [dm6]	G	T	2.127e^-4	0.963	INTRON fz	TF binding site BDTNP1_TFBS_dl
3R	9385547	3R_9385547_SNP [dm3] 3R_13559825_SNP [dm6]	C	T	2.131e^-4	0.963	INTERGENIC
2L	3801165	2L_3801165_DEL [dm3] 2L_3801165_DEL [dm6]	TT	T	2.144e^-4	0.963	INTRON CG3921
3L	7422166	3L_7422166_SNP [dm3] 3L_7429066_SNP [dm6]	T	G	2.174e^-4	0.963	INTRON CG42458
3L	8792339	3L_8792339_SNP [dm3] 3L_8799239_SNP [dm6]	G	T	2.176e^-4	0.963	SYNONYMOUS_CODING CG13310 DOWNSTREAM Fhos
X	6859738	X_6859738_SNP [dm3] X_6965705_SNP [dm6]	T	C	2.187e^-4	0.963	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	5949730	2L_5949730_SNP [dm3] 2L_5949730_SNP [dm6]	G	T	2.190e^-4	0.963	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5949732	2L_5949732_SNP [dm3] 2L_5949732_SNP [dm6]	G	C	2.190e^-4	0.963	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	13969084	3R_13969084_SNP [dm3] 3R_18143362_SNP [dm6]	C	T	2.193e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
X	9251084	X_9251084_SNP [dm3] X_9357051_SNP [dm6]	C	A	2.210e^-4	0.963	SYNONYMOUS_CODING BCL7-like UPSTREAM CG34449	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sens
2R	12124257	2R_12124257_SNP [dm3] 2R_16236752_SNP [dm6]	A	G	2.213e^-4	0.963	UTR_5_PRIME CG3687
3R	2201613	3R_2201613_INS [dm3] 3R_6375891_INS [dm6]	T	TT	2.213e^-4	0.963	DOWNSTREAM snoRNA:83E4-5 INTRON CG42564
3R	7936978	3R_7936978_SNP [dm3] 3R_12111256_SNP [dm6]	A	C	2.213e^-4	0.963	UTR_3_PRIME dpr17	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
X	21016458	X_21016458_SNP [dm3] X_21145431_SNP [dm6]	C	A	2.213e^-4	0.963	DOWNSTREAM CG45154 INTERGENIC
2R	19493516	2R_19493516_SNP [dm3] 2R_23605993_SNP [dm6]	T	C	2.228e^-4	0.963	UPSTREAM CG17664 INTRON CG17664 & 1 other
3L	3098451	3L_3098451_SNP [dm3] 3L_3098451_SNP [dm6]	T	A	2.237e^-4	0.963	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3L	2960680	3L_2960680_SNP [dm3] 3L_2960680_SNP [dm6]	T	C	2.245e^-4	0.963	SYNONYMOUS_CODING CG34025 UPSTREAM Or63a
3L	19079349	3L_19079349_SNP [dm3] 3L_19086249_SNP [dm6]	A	G	2.250e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079478	3L_19079478_SNP [dm3] 3L_19086378_SNP [dm6]	C	T	2.250e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079485	3L_19079485_SNP [dm3] 3L_19086385_SNP [dm6]	A	T	2.250e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079610	3L_19079610_SNP [dm3] 3L_19086510_SNP [dm6]	T	C	2.250e^-4	0.963	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	19700881	2L_19700881_SNP [dm3] 2L_19700881_SNP [dm6]	T	A	2.252e^-4	0.963	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14508069	3L_14508069_SNP [dm3] 3L_14514969_SNP [dm6]	A	G	2.252e^-4	0.963	INTRON bbg
3L	7073975	3L_7073975_DEL [dm3] 3L_7080875_DEL [dm6]	AATTCGTTT	A	2.252e^-4	0.963	INTERGENIC
3L	7073985	3L_7073985_SNP [dm3] 3L_7080885_SNP [dm6]	A	C	2.252e^-4	0.963	INTERGENIC
3R	7870350	3R_7870350_SNP [dm3] 3R_12044628_SNP [dm6]	C	T	2.252e^-4	0.963	INTERGENIC
3R	7870370	3R_7870370_DEL [dm3] 3R_12044648_DEL [dm6]	TTTCTTGATTTAAGCTC...	A	2.252e^-4	0.963	INTERGENIC
X	12884398	X_12884398_SNP [dm3] X_12990365_SNP [dm6]	A	G	2.252e^-4	0.963	INTRON rad
X	12884399	X_12884399_SNP [dm3] X_12990366_SNP [dm6]	T	C	2.252e^-4	0.963	INTRON rad
X	12884401	X_12884401_SNP [dm3] X_12990368_SNP [dm6]	A	T	2.252e^-4	0.963	INTRON rad
X	12884474	X_12884474_SNP [dm3] X_12990441_SNP [dm6]	G	A	2.252e^-4	0.963	INTRON rad
X	12884476	X_12884476_SNP [dm3] X_12990443_SNP [dm6]	A	C	2.252e^-4	0.963	INTRON rad
X	12884492	X_12884492_SNP [dm3] X_12990459_SNP [dm6]	T	G	2.252e^-4	0.963	INTRON rad
X	14505382	X_14505382_SNP [dm3] X_14611349_SNP [dm6]	A	G	2.252e^-4	0.963	INTRON NetA	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	7128175	X_7128175_SNP [dm3] X_7234142_SNP [dm6]	A	T	2.256e^-4	0.963	INTRON CR44357 & 1 other
3L	8798413	3L_8798413_SNP [dm3] 3L_8805313_SNP [dm6]	T	A	2.273e^-4	0.963	SYNONYMOUS_CODING CG34427 DOWNSTREAM CG13312
2R	4941109	2R_4941109_INS [dm3] 2R_9053604_INS [dm6]	A	AATCCA	2.274e^-4	0.963	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20661112	3L_20661112_SNP [dm3] 3L_20668012_SNP [dm6]	G	A	2.278e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14349070	3L_14349070_SNP [dm3] 3L_14355970_SNP [dm6]	G	A	2.285e^-4	0.963	INTRON fz	TF binding site BDTNP1_TFBS_dl
2R	12408019	2R_12408019_SNP [dm3] 2R_16520514_SNP [dm6]	G	A	2.297e^-4	0.963	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	3548545	X_3548545_SNP [dm3] X_3654512_SNP [dm6]	C	A	2.305e^-4	0.963	INTRON AstA-R1
2R	19179537	2R_19179537_SNP [dm3] 2R_23292014_SNP [dm6]	A	G	2.369e^-4	0.963	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14508070	3L_14508070_SNP [dm3] 3L_14514970_SNP [dm6]	A	T	2.373e^-4	0.963	INTRON bbg
2L	4482781	2L_4482781_SNP [dm3] 2L_4482781_SNP [dm6]	A	T	2.387e^-4	0.963	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	2991622	3R_2991622_SNP [dm3] 3R_7165900_SNP [dm6]	A	C	2.398e^-4	0.963	INTRON sas
2R	13042287	2R_13042287_SNP [dm3] 2R_17154782_SNP [dm6]	T	G	2.401e^-4	0.963	INTRON CG17290
3R	7892307	3R_7892307_SNP [dm3] 3R_12066585_SNP [dm6]	A	G	2.424e^-4	0.963	INTERGENIC
2R	16996387	2R_16996387_SNP [dm3] 2R_21108882_SNP [dm6]	C	T	2.430e^-4	0.963	INTRON ktub
2R	19001644	2R_19001644_SNP [dm3] 2R_23114121_SNP [dm6]	T	G	2.440e^-4	0.963	INTRON CR44782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15615062	2L_15615062_SNP [dm3] 2L_15615062_SNP [dm6]	C	T	2.448e^-4	0.963	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
3R	2988332	3R_2988332_SNP [dm3] 3R_7162610_SNP [dm6]	T	A	2.474e^-4	0.963	UPSTREAM sas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	16219249	X_16219249_SNP [dm3] X_16325216_SNP [dm6]	C	T	2.477e^-4	0.963	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
2R	1083785	2R_1083785_SNP [dm3] 2R_5196280_SNP [dm6]	G	C	2.480e^-4	0.963	NON_SYNONYMOUS_CODING Nipped-A	TF binding site mE1_TFBS_inv
3L	8775295	3L_8775295_SNP [dm3] 3L_8782195_SNP [dm6]	C	T	2.484e^-4	0.963	INTRON Fhos
X	8619938	X_8619938_SNP [dm3] X_8725905_SNP [dm6]	C	T	2.484e^-4	0.963	DOWNSTREAM CR43297 INTERGENIC
3L	10189628	3L_10189628_SNP [dm3] 3L_10196528_SNP [dm6]	A	T	2.492e^-4	0.963	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10189649	3L_10189649_DEL [dm3] 3L_10196549_DEL [dm6]	TG	T	2.492e^-4	0.963	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	3477413	2R_3477413_SNP [dm3] 2R_7589908_SNP [dm6]	A	C	2.495e^-4	0.963	UPSTREAM scra INTRON CG1360	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	3477496	2R_3477496_DEL [dm3] 2R_7589991_DEL [dm6]	TA	G	2.495e^-4	0.963	UTR_5_PRIME CG1360 UPSTREAM scra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4941113	2R_4941113_SNP [dm3] 2R_9053608_SNP [dm6]	T	A	2.498e^-4	0.963	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9916111	2L_9916111_SNP [dm3] 2L_9916111_SNP [dm6]	C	T	2.510e^-4	0.963	SYNONYMOUS_CODING yip2
3L	3269116	3L_3269116_SNP [dm3] 3L_3269116_SNP [dm6]	A	G	2.513e^-4	0.963	DOWNSTREAM ckd & 1 other INTERGENIC
3L	3269122	3L_3269122_SNP [dm3] 3L_3269122_SNP [dm6]	T	C	2.513e^-4	0.963	DOWNSTREAM ckd & 1 other INTERGENIC
3L	13605758	3L_13605758_SNP [dm3] 3L_13612658_SNP [dm6]	C	T	2.515e^-4	0.963	INTRON bru-3
3L	13188933	3L_13188933_SNP [dm3] 3L_13195833_SNP [dm6]	C	T	2.520e^-4	0.963	INTERGENIC
2R	14712670	2R_14712670_DEL [dm3] 2R_18825165_DEL [dm6]	GA	G	2.530e^-4	0.963	INTRON CG15097	TF binding site mE1_TFBS_chinmo
X	8285450	X_8285450_SNP [dm3] X_8391417_SNP [dm6]	C	T	2.532e^-4	0.963	INTERGENIC
3L	9737330	3L_9737330_SNP [dm3] 3L_9744230_SNP [dm6]	T	A	2.608e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	9737388	3L_9737388_SNP [dm3] 3L_9744288_SNP [dm6]	G	A	2.608e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	9737432	3L_9737432_SNP [dm3] 3L_9744332_SNP [dm6]	C	T	2.608e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
X	20463651	X_20463651_SNP [dm3] X_20592624_SNP [dm6]	G	A	2.615e^-4	0.963	SYNONYMOUS_CODING RunxA	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19017305	3L_19017305_SNP [dm3] 3L_19024205_SNP [dm6]	C	G	2.617e^-4	0.963	INTRON nkd
3L	13343644	3L_13343644_SNP [dm3] 3L_13350544_SNP [dm6]	A	G	2.635e^-4	0.963	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6131829	2L_6131829_SNP [dm3] 2L_6131829_SNP [dm6]	G	A	2.635e^-4	0.963	SYNONYMOUS_CODING CG9222	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11923818	2L_11923818_SNP [dm3] 2L_11923818_SNP [dm6]	G	T	2.649e^-4	0.963	INTRON Pde1c
X	16219224	X_16219224_SNP [dm3] X_16325191_SNP [dm6]	T	A	2.657e^-4	0.963	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
X	16219227	X_16219227_SNP [dm3] X_16325194_SNP [dm6]	T	C	2.657e^-4	0.963	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
2L	16880223	2L_16880223_SNP [dm3] 2L_16880223_SNP [dm6]	C	T	2.659e^-4	0.963	UPSTREAM CG32832 & 1 other INTRON CG31743 & 1 other
2L	16880240	2L_16880240_SNP [dm3] 2L_16880240_SNP [dm6]	T	G	2.659e^-4	0.963	UPSTREAM CG32832 & 1 other INTRON CG31743 & 1 other
2L	9032532	2L_9032532_SNP [dm3] 2L_9032532_SNP [dm6]	T	C	2.659e^-4	0.963	UPSTREAM CG9582 & 1 other INTERGENIC
2L	9032576	2L_9032576_SNP [dm3] 2L_9032576_SNP [dm6]	T	G	2.659e^-4	0.963	UPSTREAM CG9582 & 1 other INTERGENIC
2R	13621587	2R_13621587_SNP [dm3] 2R_17734082_SNP [dm6]	G	A	2.682e^-4	0.963	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
2L	5657133	2L_5657133_DEL [dm3] 2L_5657133_DEL [dm6]	TTAT	T	2.683e^-4	0.963	INTRON CG31646
2R	17991868	2R_17991868_SNP [dm3] 2R_22104363_SNP [dm6]	G	A	2.683e^-4	0.963	NON_SYNONYMOUS_CODING CG6613	TF binding site mE1_TFBS_sens
2R	20148661	2R_20148661_SNP [dm3] 2R_24261138_SNP [dm6]	T	G	2.684e^-4	0.963	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3202506	X_3202506_SNP [dm3] X_3308473_SNP [dm6]	T	C	2.687e^-4	0.963	INTRON dnc
X	20447129	X_20447129_SNP [dm3] X_20576102_SNP [dm6]	C	T	2.691e^-4	0.963	INTERGENIC	transposable element FlyBase
2R	14663051	2R_14663051_SNP [dm3] 2R_18775546_SNP [dm6]	T	A	2.702e^-4	0.963	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
2L	3058059	2L_3058059_SNP [dm3] 2L_3058059_SNP [dm6]	C	G	2.702e^-4	0.963	INTRON CG3523
2R	4941070	2R_4941070_SNP [dm3] 2R_9053565_SNP [dm6]	A	G	2.707e^-4	0.963	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4058399	3R_4058399_SNP [dm3] 3R_8232677_SNP [dm6]	C	G	2.716e^-4	0.963	UPSTREAM CR45551 & 1 other DOWNSTREAM CR45549 INTERGENIC
X	20786686	X_20786686_INS [dm3] X_20915659_INS [dm6]	G	GAG	2.724e^-4	0.963	INTRON shakB
2R	16666488	2R_16666488_SNP [dm3] 2R_20778983_SNP [dm6]	C	T	2.725e^-4	0.963	NON_SYNONYMOUS_CODING CG43711	TF binding site mE1_TFBS_HSA
3L	9777110	3L_9777110_SNP [dm3] 3L_9784010_SNP [dm6]	A	G	2.738e^-4	0.963	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	5455877	2L_5455877_SNP [dm3] 2L_5455877_SNP [dm6]	T	C	2.745e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9607354	3R_9607354_SNP [dm3] 3R_13781632_SNP [dm6]	G	A	2.752e^-4	0.963	SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7835181	3L_7835181_SNP [dm3] 3L_7842081_SNP [dm6]	G	T	2.754e^-4	0.963	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14575111	2L_14575111_SNP [dm3] 2L_14575111_SNP [dm6]	A	T	2.758e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3286467	2L_3286467_SNP [dm3] 2L_3286467_SNP [dm6]	G	A	2.761e^-4	0.963	INTERGENIC
2L	3286471	2L_3286471_SNP [dm3] 2L_3286471_SNP [dm6]	A	T	2.761e^-4	0.963	INTERGENIC
2L	12737684	2L_12737684_SNP [dm3] 2L_12737684_SNP [dm6]	C	A	2.765e^-4	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
3L	17815730	3L_17815730_SNP [dm3] 3L_17822630_SNP [dm6]	C	T	2.799e^-4	0.963	NON_SYNONYMOUS_CODING Ir75c UPSTREAM Grd	TF binding site mE1_TFBS_HSA
2L	958782	2L_958782_SNP [dm3] 2L_958782_SNP [dm6]	G	A	2.805e^-4	0.963	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	883998	3L_883998_SNP [dm3] 3L_883998_SNP [dm6]	T	C	2.806e^-4	0.963	INTRON CG32479
2L	13307482	2L_13307482_SNP [dm3] 2L_13307482_SNP [dm6]	G	C	2.808e^-4	0.963	SYNONYMOUS_CODING CG16825 UPSTREAM CG43779 DOWNSTREAM CG43778 INTRON CG43778	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	3839502	2R_3839502_SNP [dm3] 2R_7951997_SNP [dm6]	C	A	2.808e^-4	0.963	SYNONYMOUS_CODING CG14764 DOWNSTREAM CG30378 INTRON CG14764
2R	18993490	2R_18993490_SNP [dm3] 2R_23105967_SNP [dm6]	C	T	2.823e^-4	0.963	UPSTREAM Gr59d INTERGENIC
2R	18993493	2R_18993493_SNP [dm3] 2R_23105970_SNP [dm6]	T	A	2.823e^-4	0.963	UPSTREAM Gr59d INTERGENIC
2R	18993494	2R_18993494_SNP [dm3] 2R_23105971_SNP [dm6]	A	T	2.823e^-4	0.963	UPSTREAM Gr59d INTERGENIC
2R	18993499	2R_18993499_SNP [dm3] 2R_23105976_SNP [dm6]	T	C	2.823e^-4	0.963	UPSTREAM Gr59d INTERGENIC
2R	18993504	2R_18993504_SNP [dm3] 2R_23105981_SNP [dm6]	C	T	2.823e^-4	0.963	UPSTREAM Gr59d INTERGENIC
2L	11819781	2L_11819781_SNP [dm3] 2L_11819781_SNP [dm6]	A	C	2.894e^-4	0.963	INTRON Pde1c
3L	9943884	3L_9943884_SNP [dm3] 3L_9950784_SNP [dm6]	G	A	2.894e^-4	0.963	INTRON CG34356
2L	11357246	2L_11357246_SNP [dm3] 2L_11357246_SNP [dm6]	A	G	2.905e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	10971160	2R_10971160_SNP [dm3] 2R_15083655_SNP [dm6]	A	G	2.906e^-4	0.963	INTERGENIC
2R	2121534	2R_2121534_SNP [dm3] 2R_6234029_SNP [dm6]	G	T	2.910e^-4	0.963	SYNONYMOUS_CODING bin3	TF binding site mE1_TFBS_inv
2L	15187088	2L_15187088_SNP [dm3] 2L_15187088_SNP [dm6]	C	T	2.923e^-4	0.963	INTRON CG4168
3L	6332509	3L_6332509_SNP [dm3] 3L_6339409_SNP [dm6]	T	A	2.940e^-4	0.963	INTRON CG13300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2930016	2L_2930016_SNP [dm3] 2L_2930016_SNP [dm6]	G	A	2.940e^-4	0.963	UTR_5_PRIME lilli INTRON lilli
X	7270525	X_7270525_SNP [dm3] X_7376492_SNP [dm6]	T	C	2.954e^-4	0.963	INTRON CG1677 & 1 other
X	7270535	X_7270535_SNP [dm3] X_7376502_SNP [dm6]	A	T	2.954e^-4	0.963	INTRON CG1677 & 1 other
X	7270538	X_7270538_SNP [dm3] X_7376505_SNP [dm6]	T	C	2.954e^-4	0.963	INTRON CG1677 & 1 other
2L	16578790	2L_16578790_DEL [dm3] 2L_16578790_DEL [dm6]	TATTCAT	T	2.959e^-4	0.963	INTRON CG42389
3L	3269055	3L_3269055_SNP [dm3] 3L_3269055_SNP [dm6]	A	T	2.961e^-4	0.963	DOWNSTREAM ckd & 1 other INTERGENIC
2R	5415349	2R_5415349_DEL [dm3] 2R_9527844_DEL [dm6]	TAAACTATAAAAT...	T	2.967e^-4	0.963	INTRON brp	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5378736	2R_5378736_DEL [dm3] 2R_9491231_DEL [dm6]	TAATA	T	2.973e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	14726697	3L_14726697_SNP [dm3] 3L_14733597_SNP [dm6]	T	G	2.974e^-4	0.963	UPSTREAM CG13471 INTRON ome
2L	14603128	2L_14603128_SNP [dm3] 2L_14603128_SNP [dm6]	C	T	2.974e^-4	0.963	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	14603155	2L_14603155_SNP [dm3] 2L_14603155_SNP [dm6]	C	G	2.974e^-4	0.963	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	8224146	X_8224146_SNP [dm3] X_8330113_SNP [dm6]	G	A	2.984e^-4	0.963	UTR_5_PRIME nAChRalpha3
2R	16363317	2R_16363317_SNP [dm3] 2R_20475812_SNP [dm6]	C	T	2.994e^-4	0.963	INTRON CG12484
2R	13821756	2R_13821756_SNP [dm3] 2R_17934251_SNP [dm6]	A	G	2.995e^-4	0.963	INTERGENIC
3R	16550489	3R_16550489_SNP [dm3] 3R_20724767_SNP [dm6]	T	A	2.995e^-4	0.963	INTERGENIC
X	12378487	X_12378487_SNP [dm3] X_12484454_SNP [dm6]	T	C	3.003e^-4	0.963	INTERGENIC
2R	10868545	2R_10868545_SNP [dm3] 2R_14981040_SNP [dm6]	G	C	3.010e^-4	0.963	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
X	4567053	X_4567053_SNP [dm3] X_4673020_SNP [dm6]	T	C	3.010e^-4	0.963	INTRON rap	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2844688	2L_2844688_SNP [dm3] 2L_2844688_SNP [dm6]	T	C	3.011e^-4	0.963	SYNONYMOUS_CODING CG18557 UPSTREAM CG18558	TF binding site mE1_TFBS_cad
2L	2515171	2L_2515171_SNP [dm3] 2L_2515171_SNP [dm6]	T	C	3.019e^-4	0.963	INTERGENIC
2R	15113507	2R_15113507_SNP [dm3] 2R_19226002_SNP [dm6]	A	T	3.020e^-4	0.963	INTRON hppy
2R	15916454	2R_15916454_SNP [dm3] 2R_20028949_SNP [dm6]	T	C	3.023e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3418569	2L_3418569_SNP [dm3] 2L_3418569_SNP [dm6]	T	G	3.031e^-4	0.963	DOWNSTREAM CG31952 INTRON pgant2
X	7270380	X_7270380_SNP [dm3] X_7376347_SNP [dm6]	G	A	3.044e^-4	0.963	INTRON CG1677 & 1 other
X	7270382	X_7270382_SNP [dm3] X_7376349_SNP [dm6]	A	C	3.044e^-4	0.963	INTRON CG1677 & 1 other
3L	12189891	3L_12189891_SNP [dm3] 3L_12196791_SNP [dm6]	G	C	3.047e^-4	0.963	UPSTREAM CR45746 & 1 other INTERGENIC
2L	12132543	2L_12132543_SNP [dm3] 2L_12132543_SNP [dm6]	C	T	3.066e^-4	0.963	INTRON rho-6
X	19060632	X_19060632_INS [dm3] X_19166599_INS [dm6]	A	ATATT	3.071e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
2L	5125729	2L_5125729_SNP [dm3] 2L_5125729_SNP [dm6]	G	A	3.073e^-4	0.963	INTRON Msp300	TF binding site mE1_TFBS_cad
3L	2092076	3L_2092076_SNP [dm3] 3L_2092076_SNP [dm6]	A	T	3.082e^-4	0.963	SYNONYMOUS_CODING sls INTRON sls	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12470677	2L_12470677_SNP [dm3] 2L_12470677_SNP [dm6]	G	C	3.093e^-4	0.963	INTRON bun
2R	14723123	2R_14723123_SNP [dm3] 2R_18835618_SNP [dm6]	G	A	3.111e^-4	0.963	UPSTREAM CG15098 INTRON CG15083
3L	6433744	3L_6433744_SNP [dm3] 3L_6440644_SNP [dm6]	T	A	3.111e^-4	0.963	INTRON CG42747
2R	11154050	2R_11154050_SNP [dm3] 2R_15266545_SNP [dm6]	T	A	3.112e^-4	0.963	UTR_3_PRIME Trpm INTRON Trpm
2R	11154073	2R_11154073_SNP [dm3] 2R_15266568_SNP [dm6]	C	G	3.112e^-4	0.963	UTR_3_PRIME Trpm INTRON Trpm
2L	16939090	2L_16939090_SNP [dm3] 2L_16939090_SNP [dm6]	G	T	3.116e^-4	0.963	INTERGENIC
2L	9033491	2L_9033491_SNP [dm3] 2L_9033491_SNP [dm6]	T	A	3.116e^-4	0.963	INTERGENIC
3L	8790080	3L_8790080_SNP [dm3] 3L_8796980_SNP [dm6]	T	C	3.116e^-4	0.963	INTRON Fhos
3L	8790611	3L_8790611_SNP [dm3] 3L_8797511_SNP [dm6]	C	T	3.116e^-4	0.963	STOP_GAINED Fhos INTRON Fhos
2L	14602914	2L_14602914_SNP [dm3] 2L_14602914_SNP [dm6]	A	G	3.119e^-4	0.963	SYNONYMOUS_CODING osp	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12132474	2L_12132474_SNP [dm3] 2L_12132474_SNP [dm6]	G	A	3.128e^-4	0.963	INTRON rho-6
2L	12132477	2L_12132477_SNP [dm3] 2L_12132477_SNP [dm6]	T	C	3.128e^-4	0.963	INTRON rho-6
X	13268923	X_13268923_DEL [dm3] X_13374890_DEL [dm6]	ATAGAAAACTTTAGCTTTTG...	A	3.137e^-4	0.963	INTRON CG1640	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	12717328	X_12717328_SNP [dm3] X_12823295_SNP [dm6]	T	C	3.145e^-4	0.963	INTRON Pde9
X	8285482	X_8285482_SNP [dm3] X_8391449_SNP [dm6]	G	T	3.168e^-4	0.963	INTERGENIC
2L	13208837	2L_13208837_SNP [dm3] 2L_13208837_SNP [dm6]	A	T	3.168e^-4	0.963	INTRON Pect
2L	11018215	2L_11018215_SNP [dm3] 2L_11018215_SNP [dm6]	C	A	3.171e^-4	0.963	SYNONYMOUS_CODING CG14913 INTRON Samuel
X	12884403	X_12884403_INS [dm3] X_12990370_INS [dm6]	A	AG	3.171e^-4	0.963	INTRON rad
2L	15246498	2L_15246498_SNP [dm3] 2L_15246498_SNP [dm6]	A	T	3.191e^-4	0.963	UPSTREAM ZnT35C INTRON ZnT35C
2R	11156869	2R_11156869_SNP [dm3] 2R_15269364_SNP [dm6]	T	C	3.200e^-4	0.963	INTRON Trpm
2L	8586975	2L_8586975_SNP [dm3] 2L_8586975_SNP [dm6]	T	C	3.206e^-4	0.963	INTRON Sema-1a
3R	12136010	3R_12136010_SNP [dm3] 3R_16310288_SNP [dm6]	C	T	3.213e^-4	0.963	DOWNSTREAM Sulf1 INTERGENIC
3L	5627906	3L_5627906_SNP [dm3] 3L_5634806_SNP [dm6]	T	G	3.222e^-4	0.963	INTRON Blimp-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	4482794	2L_4482794_SNP [dm3] 2L_4482794_SNP [dm6]	T	C	3.227e^-4	0.963	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	5421259	2L_5421259_SNP [dm3] 2L_5421259_SNP [dm6]	C	G	3.231e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
2L	19238561	2L_19238561_SNP [dm3] 2L_19238561_SNP [dm6]	C	T	3.232e^-4	0.963	INTERGENIC
2R	12879367	2R_12879367_SNP [dm3] 2R_16991862_SNP [dm6]	G	T	3.260e^-4	0.963	INTRON Cbp53E
2R	17898418	2R_17898418_SNP [dm3] 2R_22010913_SNP [dm6]	T	A	3.265e^-4	0.963	INTRON CG34370
3L	3098317	3L_3098317_SNP [dm3] 3L_3098317_SNP [dm6]	G	A	3.268e^-4	0.963	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2R	12633024	2R_12633024_SNP [dm3] 2R_16745519_SNP [dm6]	C	T	3.295e^-4	0.963	UTR_3_PRIME CG15617 UPSTREAM Sfp53D	TF binding site mE1_TFBS_cad
2R	14662956	2R_14662956_SNP [dm3] 2R_18775451_SNP [dm6]	A	G	3.317e^-4	0.963	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	14662987	2R_14662987_SNP [dm3] 2R_18775482_SNP [dm6]	G	C	3.317e^-4	0.963	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2L	11934477	2L_11934477_SNP [dm3] 2L_11934477_SNP [dm6]	G	A	3.321e^-4	0.963	UPSTREAM Or33a INTERGENIC
3L	3238678	3L_3238678_SNP [dm3] 3L_3238678_SNP [dm6]	C	T	3.326e^-4	0.963	SYNONYMOUS_CODING CG17746
2R	6543989	2R_6543989_SNP [dm3] 2R_10656484_SNP [dm6]	G	C	3.329e^-4	0.963	DOWNSTREAM CR44452 INTERGENIC
3L	3238495	3L_3238495_SNP [dm3] 3L_3238495_SNP [dm6]	C	G	3.345e^-4	0.963	INTRON CG17746	TF binding site BDTNP1_TFBS_twi
3L	8681804	3L_8681804_SNP [dm3] 3L_8688704_SNP [dm6]	A	C	3.353e^-4	0.963	INTERGENIC
3L	9737402	3L_9737402_SNP [dm3] 3L_9744302_SNP [dm6]	C	T	3.354e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
2R	18993500	2R_18993500_INS [dm3] 2R_23105977_INS [dm6]	T	TGTCTCAGCT	3.370e^-4	0.963	UPSTREAM Gr59d INTERGENIC
X	8910877	X_8910877_SNP [dm3] X_9016844_SNP [dm6]	T	A	3.396e^-4	0.963	INTRON CR43836 & 1 other
X	12087537	X_12087537_INS [dm3] X_12193504_INS [dm6]	T	TTTGTATGT	3.398e^-4	0.963	INTRON Ten-a	TF binding site mE1_TFBS_cad
3R	3408950	3R_3408950_SNP [dm3] 3R_7583228_SNP [dm6]	A	C	3.414e^-4	0.963	INTRON CG34127
X	1783154	X_1783154_SNP [dm3] X_1889121_SNP [dm6]	A	C	3.415e^-4	0.963	NON_SYNONYMOUS_CODING trr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	6524657	2R_6524657_SNP [dm3] 2R_10637152_SNP [dm6]	A	T	3.421e^-4	0.963	INTRON CG11883
2R	19179161	2R_19179161_SNP [dm3] 2R_23291638_SNP [dm6]	T	G	3.426e^-4	0.963	UPSTREAM CR44783 INTERGENIC
3L	14769100	3L_14769100_SNP [dm3] 3L_14776000_SNP [dm6]	A	T	3.430e^-4	0.963	UTR_5_PRIME mop DOWNSTREAM bmm	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2L	22135879	2L_22135879_SNP [dm3] 2L_22135879_SNP [dm6]	G	A	3.434e^-4	0.963	INTRON CG42748	transposable element FlyBase
3L	10731930	3L_10731930_SNP [dm3] 3L_10738830_SNP [dm6]	A	G	3.435e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	5907643	2L_5907643_SNP [dm3] 2L_5907643_SNP [dm6]	T	C	3.451e^-4	0.963	INTRON bchs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12591631	3L_12591631_SNP [dm3] 3L_12598531_SNP [dm6]	T	G	3.468e^-4	0.963	INTERGENIC
3L	12591635	3L_12591635_SNP [dm3] 3L_12598535_SNP [dm6]	T	G	3.468e^-4	0.963	INTERGENIC
3L	18395858	3L_18395858_SNP [dm3] 3L_18402758_SNP [dm6]	C	T	3.470e^-4	0.963	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8553861	3L_8553861_SNP [dm3] 3L_8560761_SNP [dm6]	T	A	3.491e^-4	0.963	INTRON rhea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7998624	3L_7998624_SNP [dm3] 3L_8005524_SNP [dm6]	T	C	3.491e^-4	0.963	INTRON nmo	TF binding site BDTNP1_TFBS_dl
X	14030918	X_14030918_SNP [dm3] X_14136885_SNP [dm6]	T	C	3.514e^-4	0.963	INTERGENIC
X	14030919	X_14030919_SNP [dm3] X_14136886_SNP [dm6]	T	C	3.514e^-4	0.963	INTERGENIC
2R	6821793	2R_6821793_SNP [dm3] 2R_10934288_SNP [dm6]	C	T	3.531e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	9546869	3L_9546869_SNP [dm3] 3L_9553769_SNP [dm6]	A	G	3.562e^-4	0.963	INTRON CG42673
3L	8322407	3L_8322407_SNP [dm3] 3L_8329307_SNP [dm6]	T	C	3.563e^-4	0.963	DOWNSTREAM CG34461 INTRON CG34462	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3R	14440082	3R_14440082_SNP [dm3] 3R_18614360_SNP [dm6]	T	A	3.566e^-4	0.963	INTRON qin & 1 other
3R	14440093	3R_14440093_INS [dm3] 3R_18614371_INS [dm6]	GC	CGATTTCCA	3.566e^-4	0.963	INTRON qin & 1 other
X	16715987	X_16715987_SNP [dm3] X_16821954_SNP [dm6]	T	C	3.568e^-4	0.963	INTRON CG4829
2L	8738788	2L_8738788_SNP [dm3] 2L_8738788_SNP [dm6]	C	T	3.618e^-4	0.963	INTRON raw
3R	1769698	3R_1769698_SNP [dm3] 3R_5943976_SNP [dm6]	C	T	3.622e^-4	0.963	INTRON CG34113
2L	13314326	2L_13314326_SNP [dm3] 2L_13314326_SNP [dm6]	G	A	3.626e^-4	0.963	INTRON CG43778
2L	5657209	2L_5657209_SNP [dm3] 2L_5657209_SNP [dm6]	A	G	3.626e^-4	0.963	INTRON CG31646
2R	16150100	2R_16150100_SNP [dm3] 2R_20262595_SNP [dm6]	T	A	3.636e^-4	0.963	DOWNSTREAM Hsl & 1 other INTRON PCNA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	16150264	2R_16150264_SNP [dm3] 2R_20262759_SNP [dm6]	C	T	3.636e^-4	0.963	UTR_5_PRIME PCNA DOWNSTREAM plu	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
2L	8255631	2L_8255631_SNP [dm3] 2L_8255631_SNP [dm6]	C	A	3.644e^-4	0.963	INTRON CG8086
2L	8255658	2L_8255658_DEL [dm3] 2L_8255658_DEL [dm6]	ATCATCG	C	3.644e^-4	0.963	INTRON CG8086
2L	8255669	2L_8255669_SNP [dm3] 2L_8255669_SNP [dm6]	A	T	3.644e^-4	0.963	INTRON CG8086
2L	8255673	2L_8255673_DEL [dm3] 2L_8255673_DEL [dm6]	TGTAT	T	3.644e^-4	0.963	INTRON CG8086
2L	2644835	2L_2644835_SNP [dm3] 2L_2644835_SNP [dm6]	T	A	3.645e^-4	0.963	INTERGENIC
2L	12855072	2L_12855072_SNP [dm3] 2L_12855072_SNP [dm6]	T	G	3.655e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	8255605	2L_8255605_SNP [dm3] 2L_8255605_SNP [dm6]	T	A	3.657e^-4	0.963	INTRON CG8086
X	8920564	X_8920564_INS [dm3] X_9026531_INS [dm6]	T	TT	3.668e^-4	0.963	UTR_3_PRIME rdgA DOWNSTREAM rdgA INTRON CR43836
3L	19010469	3L_19010469_SNP [dm3] 3L_19017369_SNP [dm6]	T	A	3.700e^-4	0.963	INTRON nkd	TF binding site mE1_TFBS_HSA
3L	9737391	3L_9737391_SNP [dm3] 3L_9744291_SNP [dm6]	A	C	3.701e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3R	4809382	3R_4809382_SNP [dm3] 3R_8983660_SNP [dm6]	T	C	3.721e^-4	0.963	SYNONYMOUS_CODING RagA-B DOWNSTREAM CAHbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	6790995	2L_6790995_SNP [dm3] 2L_6790995_SNP [dm6]	T	A	3.722e^-4	0.963	INTRON nrv2	TF binding site mE1_TFBS_Trl
3R	17112172	3R_17112172_SNP [dm3] 3R_21286450_SNP [dm6]	G	A	3.738e^-4	0.963	INTRON SIFaR	TF binding site mE1_TFBS_cad
2R	7549768	2R_7549768_SNP [dm3] 2R_11662263_SNP [dm6]	A	G	3.739e^-4	0.963	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	14779539	X_14779539_SNP [dm3] X_14885506_SNP [dm6]	G	T	3.744e^-4	0.963	DOWNSTREAM CG9514 INTRON Flo2
2L	13273442	2L_13273442_SNP [dm3] 2L_13273442_SNP [dm6]	T	C	3.760e^-4	0.963	INTRON CG44085
3L	19079133	3L_19079133_SNP [dm3] 3L_19086033_SNP [dm6]	T	G	3.764e^-4	0.963	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	6469079	2L_6469079_SNP [dm3] 2L_6469079_SNP [dm6]	T	C	3.766e^-4	0.963	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	7703222	2R_7703222_SNP [dm3] 2R_11815717_SNP [dm6]	A	T	3.767e^-4	0.963	INTERGENIC
2R	19179258	2R_19179258_SNP [dm3] 2R_23291735_SNP [dm6]	T	A	3.768e^-4	0.963	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	8322931	3L_8322931_SNP [dm3] 3L_8329831_SNP [dm6]	T	C	3.779e^-4	0.963	SYNONYMOUS_CODING CG34462
2L	2343327	2L_2343327_SNP [dm3] 2L_2343327_SNP [dm6]	C	T	3.791e^-4	0.963	INTRON CG9967 & 1 other
2L	14799266	2L_14799266_SNP [dm3] 2L_14799266_SNP [dm6]	T	A	3.794e^-4	0.963	INTERGENIC
3L	12189771	3L_12189771_SNP [dm3] 3L_12196671_SNP [dm6]	C	T	3.797e^-4	0.963	UPSTREAM CR45746 INTERGENIC
2R	11154077	2R_11154077_SNP [dm3] 2R_15266572_SNP [dm6]	A	T	3.830e^-4	0.963	UTR_3_PRIME Trpm INTRON Trpm
2R	6670733	2R_6670733_SNP [dm3] 2R_10783228_SNP [dm6]	T	C	3.847e^-4	0.963	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	19351399	2R_19351399_SNP [dm3] 2R_23463876_SNP [dm6]	A	G	3.852e^-4	0.963	INTRON CG43795
3L	11625616	3L_11625616_SNP [dm3] 3L_11632516_SNP [dm6]	T	A	3.876e^-4	0.963	DOWNSTREAM CR45158 INTRON CG32091
2L	2024931	2L_2024931_SNP [dm3] 2L_2024931_SNP [dm6]	A	T	3.884e^-4	0.963	INTRON CG4238
2L	2025216	2L_2025216_SNP [dm3] 2L_2025216_SNP [dm6]	G	A	3.884e^-4	0.963	INTRON CG4238
3R	9607343	3R_9607343_SNP [dm3] 3R_13781621_SNP [dm6]	C	A	3.905e^-4	0.963	NON_SYNONYMOUS_CODING CG9286 UPSTREAM Dip-B DOWNSTREAM CG9288 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15058922	2R_15058922_SNP [dm3] 2R_19171417_SNP [dm6]	A	C	3.939e^-4	0.963	INTRON CG10737
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	3.943e^-4	0.963	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	9438430	2L_9438430_DEL [dm3] 2L_9438430_DEL [dm6]	ACTATGCACAGTATA...	A	3.944e^-4	0.963	INTRON numb	TF binding site BDTNP1_TFBS_dl
2L	4747964	2L_4747964_SNP [dm3] 2L_4747964_SNP [dm6]	A	C	3.962e^-4	0.963	INTRON CG15630
2L	4747975	2L_4747975_SNP [dm3] 2L_4747975_SNP [dm6]	G	A	3.962e^-4	0.963	INTRON CG15630
2L	9147028	2L_9147028_SNP [dm3] 2L_9147028_SNP [dm6]	G	A	3.962e^-4	0.963	INTRON CG32982	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11223810	2R_11223810_SNP [dm3] 2R_15336305_SNP [dm6]	G	A	3.962e^-4	0.963	INTRON Hr51	TF binding site BDTNP1_TFBS_twi
3L	20847589	3L_20847589_SNP [dm3] 3L_20854489_SNP [dm6]	T	A	3.962e^-4	0.963	INTRON CG32432
3L	2800514	3L_2800514_SNP [dm3] 3L_2800514_SNP [dm6]	A	G	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	2800516	3L_2800516_SNP [dm3] 3L_2800516_SNP [dm6]	G	T	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	2800522	3L_2800522_SNP [dm3] 3L_2800522_SNP [dm6]	A	T	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_inv
3L	2801082	3L_2801082_SNP [dm3] 3L_2801082_SNP [dm6]	T	A	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2801156	3L_2801156_SNP [dm3] 3L_2801156_SNP [dm6]	A	G	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2801740	3L_2801740_SNP [dm3] 3L_2801740_SNP [dm6]	T	C	3.962e^-4	0.963	INTRON CG43444
3L	2802451	3L_2802451_SNP [dm3] 3L_2802451_SNP [dm6]	C	T	3.962e^-4	0.963	INTRON CG43444
3L	2802786	3L_2802786_SNP [dm3] 3L_2802786_SNP [dm6]	G	A	3.962e^-4	0.963	INTRON CG43444
3L	2803364	3L_2803364_SNP [dm3] 3L_2803364_SNP [dm6]	T	C	3.962e^-4	0.963	INTRON CG43444
3L	2804749	3L_2804749_SNP [dm3] 3L_2804749_SNP [dm6]	A	T	3.962e^-4	0.963	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3L	2806470	3L_2806470_SNP [dm3] 3L_2806470_SNP [dm6]	C	A	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2806678	3L_2806678_SNP [dm3] 3L_2806678_SNP [dm6]	C	G	3.962e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2807316	3L_2807316_SNP [dm3] 3L_2807316_SNP [dm6]	G	C	3.962e^-4	0.963	INTRON CG43444	TF binding site BDTNP1_TFBS_dl
X	6785177	X_6785177_SNP [dm3] X_6891144_SNP [dm6]	G	A	3.962e^-4	0.963	INTERGENIC
X	6785206	X_6785206_SNP [dm3] X_6891173_SNP [dm6]	G	A	3.962e^-4	0.963	INTERGENIC
2L	3801201	2L_3801201_SNP [dm3] 2L_3801201_SNP [dm6]	C	T	3.973e^-4	0.963	INTRON CG3921
2L	14659672	2L_14659672_SNP [dm3] 2L_14659672_SNP [dm6]	G	A	3.982e^-4	0.963	INTRON osp
3L	10189681	3L_10189681_SNP [dm3] 3L_10196581_SNP [dm6]	A	T	3.993e^-4	0.963	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1496387	3L_1496387_SNP [dm3] 3L_1496387_SNP [dm6]	G	T	4.009e^-4	0.963	UTR_5_PRIME CG12084 DOWNSTREAM pUf68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16004030	3L_16004030_SNP [dm3] 3L_16010930_SNP [dm6]	A	G	4.012e^-4	0.963	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	20015774	X_20015774_SNP [dm3] X_20121741_SNP [dm6]	G	C	4.013e^-4	0.963	UPSTREAM CG34331 INTERGENIC
X	20015813	X_20015813_INS [dm3] X_20121780_INS [dm6]	A	AA	4.013e^-4	0.963	UPSTREAM CG34331 INTERGENIC
X	20015948	X_20015948_SNP [dm3] X_20121915_SNP [dm6]	T	A	4.013e^-4	0.963	UPSTREAM CG34331 INTERGENIC
2L	8166664	2L_8166664_SNP [dm3] 2L_8166664_SNP [dm6]	T	A	4.015e^-4	0.963	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2L	4279311	2L_4279311_SNP [dm3] 2L_4279311_SNP [dm6]	C	A	4.019e^-4	0.963	UTR_5_PRIME Art2	TF binding site BDTNP1_TFBS_dl
2L	5604447	2L_5604447_SNP [dm3] 2L_5604447_SNP [dm6]	T	G	4.019e^-4	0.963	INTRON CG14010
2R	17903721	2R_17903721_SNP [dm3] 2R_22016216_SNP [dm6]	T	G	4.019e^-4	0.963	INTRON CG34370
3L	20692708	3L_20692708_SNP [dm3] 3L_20699608_SNP [dm6]	A	T	4.019e^-4	0.963	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	2679123	3L_2679123_SNP [dm3] 3L_2679123_SNP [dm6]	C	A	4.019e^-4	0.963	NON_SYNONYMOUS_CODING Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13118226	3R_13118226_DEL [dm3] 3R_17292504_DEL [dm6]	TT	T	4.019e^-4	0.963	INTERGENIC
3R	24308944	3R_24308944_SNP [dm3] 3R_28483222_SNP [dm6]	T	G	4.019e^-4	0.963	INTERGENIC
X	13030183	X_13030183_SNP [dm3] X_13136150_SNP [dm6]	G	T	4.019e^-4	0.963	INTERGENIC
X	12378826	X_12378826_SNP [dm3] X_12484793_SNP [dm6]	G	C	4.027e^-4	0.963	INTERGENIC
2L	5659547	2L_5659547_DEL [dm3] 2L_5659547_DEL [dm6]	CAC	C	4.032e^-4	0.963	UPSTREAM CG31646 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11923971	2L_11923971_SNP [dm3] 2L_11923971_SNP [dm6]	T	C	4.034e^-4	0.963	INTRON Pde1c
3L	19078106	3L_19078106_SNP [dm3] 3L_19085006_SNP [dm6]	C	T	4.046e^-4	0.963	INTRON Mkp3	TF binding site BDTNP1_TFBS_dl
2L	12737805	2L_12737805_SNP [dm3] 2L_12737805_SNP [dm6]	C	T	4.051e^-4	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
3R	4059865	3R_4059865_SNP [dm3] 3R_8234143_SNP [dm6]	G	T	4.061e^-4	0.963	UPSTREAM CR45549 INTRON DNApol-iota	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4065083	3R_4065083_SNP [dm3] 3R_8239361_SNP [dm6]	G	T	4.061e^-4	0.963	SYNONYMOUS_CODING Ada2b	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	4066014	3R_4066014_SNP [dm3] 3R_8240292_SNP [dm6]	T	C	4.061e^-4	0.963	DOWNSTREAM CG9636 INTRON Ada2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4066015	3R_4066015_SNP [dm3] 3R_8240293_SNP [dm6]	A	G	4.061e^-4	0.963	DOWNSTREAM CG9636 INTRON Ada2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4066256	3R_4066256_SNP [dm3] 3R_8240534_SNP [dm6]	T	G	4.061e^-4	0.963	UPSTREAM Ada2b DOWNSTREAM CG9636 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	9777870	3L_9777870_SNP [dm3] 3L_9784770_SNP [dm6]	C	T	4.062e^-4	0.963	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	6129555	2L_6129555_SNP [dm3] 2L_6129555_SNP [dm6]	T	C	4.070e^-4	0.963	SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	5615810	2L_5615810_SNP [dm3] 2L_5615810_SNP [dm6]	A	C	4.092e^-4	0.963	DOWNSTREAM CR44795 INTRON CG14010	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	22406205	3R_22406205_SNP [dm3] 3R_26580483_SNP [dm6]	G	C	4.092e^-4	0.963	NON_SYNONYMOUS_CODING scrib	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13621722	2R_13621722_SNP [dm3] 2R_17734217_SNP [dm6]	C	G	4.101e^-4	0.963	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	13621725	2R_13621725_SNP [dm3] 2R_17734220_SNP [dm6]	T	G	4.101e^-4	0.963	SYNONYMOUS_CODING CG34195 DOWNSTREAM CG6406	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	5069313	2L_5069313_SNP [dm3] 2L_5069313_SNP [dm6]	A	C	4.104e^-4	0.963	DOWNSTREAM mir-2495 & 1 other INTRON qtc
2L	11319502	2L_11319502_SNP [dm3] 2L_11319502_SNP [dm6]	T	C	4.109e^-4	0.963	DOWNSTREAM CR44583 INTERGENIC
3L	19236074	3L_19236074_DEL [dm3] 3L_19242974_DEL [dm6]	ATTC	A	4.110e^-4	0.963	INTERGENIC
3L	19236079	3L_19236079_SNP [dm3] 3L_19242979_SNP [dm6]	T	A	4.110e^-4	0.963	INTERGENIC
3L	19236088	3L_19236088_DEL [dm3] 3L_19242988_DEL [dm6]	TATT	CCG	4.110e^-4	0.963	INTERGENIC
3L	19236098	3L_19236098_SNP [dm3] 3L_19242998_SNP [dm6]	T	C	4.110e^-4	0.963	INTERGENIC
2L	11589781	2L_11589781_SNP [dm3] 2L_11589781_SNP [dm6]	C	T	4.111e^-4	0.963	DOWNSTREAM CR44496 INTRON kek2
3R	9892361	3R_9892361_SNP [dm3] 3R_14066639_SNP [dm6]	C	T	4.118e^-4	0.963	UTR_5_PRIME foxo
2L	8255317	2L_8255317_SNP [dm3] 2L_8255317_SNP [dm6]	C	T	4.134e^-4	0.963	INTRON CG8086
3L	12273733	3L_12273733_SNP [dm3] 3L_12280633_SNP [dm6]	T	C	4.137e^-4	0.963	SYNONYMOUS_CODING CG10426	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12730633	2R_12730633_SNP [dm3] 2R_16843128_SNP [dm6]	A	T	4.141e^-4	0.963	DOWNSTREAM Ugt37c1 INTERGENIC
2R	1005905	2R_1005905_SNP [dm3] 2R_5118400_SNP [dm6]	C	A	4.159e^-4	0.963	INTRON gus
X	2324884	X_2324884_SNP [dm3] X_2430851_SNP [dm6]	G	T	4.167e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	5102001	3R_5102001_SNP [dm3] 3R_9276279_SNP [dm6]	C	G	4.174e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	9027300	3L_9027300_SNP [dm3] 3L_9034200_SNP [dm6]	T	G	4.183e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site mE1_TFBS_cad
3L	5215053	3L_5215053_SNP [dm3] 3L_5221953_SNP [dm6]	A	T	4.201e^-4	0.963	INTRON shep
3L	18848786	3L_18848786_SNP [dm3] 3L_18855686_SNP [dm6]	C	T	4.209e^-4	0.963	INTERGENIC
2R	1027927	2R_1027927_SNP [dm3] 2R_5140422_SNP [dm6]	C	T	4.218e^-4	0.963	INTERGENIC
3L	1171979	3L_1171979_SNP [dm3] 3L_1171979_SNP [dm6]	T	C	4.225e^-4	0.963	INTRON bab2	regulatory region REDfly_CRMs
2R	14201605	2R_14201605_SNP [dm3] 2R_18314100_SNP [dm6]	C	G	4.227e^-4	0.963	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	24624262	3R_24624262_SNP [dm3] 3R_28798540_SNP [dm6]	A	T	4.239e^-4	0.963	INTERGENIC
2L	9032502	2L_9032502_SNP [dm3] 2L_9032502_SNP [dm6]	T	C	4.240e^-4	0.963	UPSTREAM CG9582 & 1 other INTERGENIC
3L	6325886	3L_6325886_SNP [dm3] 3L_6332786_SNP [dm6]	G	A	4.265e^-4	0.963	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_chinmo
X	20797266	X_20797266_SNP [dm3] X_20926239_SNP [dm6]	G	T	4.276e^-4	0.963	INTRON shakB	TF binding site BDTNP1_TFBS_dl
2L	16374866	2L_16374866_SNP [dm3] 2L_16374866_SNP [dm6]	G	A	4.296e^-4	0.963	INTERGENIC
3R	14437118	3R_14437118_INS [dm3] 3R_18611396_INS [dm6]	T	TT	4.312e^-4	0.963	INTRON qin & 1 other
2L	9644869	2L_9644869_SNP [dm3] 2L_9644869_SNP [dm6]	G	A	4.312e^-4	0.963	SYNONYMOUS_CODING Apoltp	TF binding site mE1_TFBS_cad
3R	4909576	3R_4909576_SNP [dm3] 3R_9083854_SNP [dm6]	C	T	4.313e^-4	0.963	INTRON pum
3L	7087325	3L_7087325_SNP [dm3] 3L_7094225_SNP [dm6]	C	A	4.326e^-4	0.963	UPSTREAM form3 DOWNSTREAM Cpr65Ec INTERGENIC
2R	15370134	2R_15370134_SNP [dm3] 2R_19482629_SNP [dm6]	T	A	4.327e^-4	0.963	DOWNSTREAM par-1 INTRON par-1
3L	3922363	3L_3922363_INS [dm3] 3L_3922363_INS [dm6]	T	TT	4.333e^-4	0.963	INTRON Eip63F-1
2L	2343207	2L_2343207_SNP [dm3] 2L_2343207_SNP [dm6]	A	T	4.337e^-4	0.963	INTRON CG9967 & 1 other
2L	11483952	2L_11483952_DEL [dm3] 2L_11483952_DEL [dm6]	CT	C	4.338e^-4	0.963	UPSTREAM CG43355 & 1 other INTERGENIC
2R	15290558	2R_15290558_SNP [dm3] 2R_19403053_SNP [dm6]	T	C	4.339e^-4	0.963	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	5421774	3L_5421774_SNP [dm3] 3L_5428674_SNP [dm6]	G	A	4.341e^-4	0.963	INTRON CG34391
2R	1005428	2R_1005428_SNP [dm3] 2R_5117923_SNP [dm6]	C	A	4.371e^-4	0.963	INTRON gus
3L	12433057	3L_12433057_SNP [dm3] 3L_12439957_SNP [dm6]	G	T	4.375e^-4	0.963	INTERGENIC
2L	12132681	2L_12132681_DEL [dm3] 2L_12132681_DEL [dm6]	TAGCTTTT	T	4.388e^-4	0.963	INTRON rho-6
X	16848887	X_16848887_SNP [dm3] X_16954854_SNP [dm6]	C	T	4.388e^-4	0.963	SYNONYMOUS_CODING RhoGAP15B
X	16848893	X_16848893_SNP [dm3] X_16954860_SNP [dm6]	T	G	4.388e^-4	0.963	SYNONYMOUS_CODING RhoGAP15B
2R	12730663	2R_12730663_SNP [dm3] 2R_16843158_SNP [dm6]	C	A	4.402e^-4	0.963	DOWNSTREAM Ugt37c1 INTERGENIC
3L	5483985	3L_5483985_SNP [dm3] 3L_5490885_SNP [dm6]	T	A	4.424e^-4	0.963	INTERGENIC
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	4.425e^-4	0.963	INTERGENIC
X	3548381	X_3548381_SNP [dm3] X_3654348_SNP [dm6]	T	A	4.426e^-4	0.963	INTRON AstA-R1
X	7270456	X_7270456_SNP [dm3] X_7376423_SNP [dm6]	C	A	4.429e^-4	0.963	INTRON CG1677 & 1 other
2L	5245911	2L_5245911_SNP [dm3] 2L_5245911_SNP [dm6]	C	T	4.435e^-4	0.963	INTRON tkv	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	13139325	2L_13139325_SNP [dm3] 2L_13139325_SNP [dm6]	C	T	4.445e^-4	0.963	INTERGENIC
2R	6542744	2R_6542744_SNP [dm3] 2R_10655239_SNP [dm6]	C	T	4.452e^-4	0.963	INTERGENIC
2R	7571253	2R_7571253_SNP [dm3] 2R_11683748_SNP [dm6]	G	A	4.453e^-4	0.963	DOWNSTREAM CG13196 INTRON Buffy
3L	3268852	3L_3268852_SNP [dm3] 3L_3268852_SNP [dm6]	T	C	4.469e^-4	0.963	SYNONYMOUS_CODING CG34265 DOWNSTREAM ckd
X	12378518	X_12378518_SNP [dm3] X_12484485_SNP [dm6]	T	C	4.476e^-4	0.963	INTERGENIC
2L	8389827	2L_8389827_SNP [dm3] 2L_8389827_SNP [dm6]	T	C	4.484e^-4	0.963	UPSTREAM CG42819 DOWNSTREAM CG42820 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	2834445	X_2834445_SNP [dm3] X_2940412_SNP [dm6]	C	T	4.491e^-4	0.963	SYNONYMOUS_CODING CG14420 UPSTREAM CG14421 INTRON kirre
2R	1027600	2R_1027600_SNP [dm3] 2R_5140095_SNP [dm6]	A	C	4.501e^-4	0.963	INTERGENIC
X	6493454	X_6493454_SNP [dm3] X_6599421_SNP [dm6]	C	T	4.507e^-4	0.963	UTR_3_PRIME APC7 UPSTREAM pigs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	12601962	3L_12601962_SNP [dm3] 3L_12608862_SNP [dm6]	G	T	4.511e^-4	0.963	UPSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9737409	3L_9737409_SNP [dm3] 3L_9744309_SNP [dm6]	G	T	4.514e^-4	0.963	UPSTREAM CG42268 INTRON CG42268 EXON CR44348	TF binding site BDTNP1_TFBS_dl
3L	5373966	3L_5373966_SNP [dm3] 3L_5380866_SNP [dm6]	T	A	4.523e^-4	0.963	INTRON Ir64a
3L	13101635	3L_13101635_SNP [dm3] 3L_13108535_SNP [dm6]	C	A	4.523e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7288490	2R_7288490_SNP [dm3] 2R_11400985_SNP [dm6]	A	G	4.528e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_Trl
3L	11574893	3L_11574893_SNP [dm3] 3L_11581793_SNP [dm6]	T	C	4.536e^-4	0.963	UTR_3_PRIME CG33269 UPSTREAM CG43391 DOWNSTREAM CG32086
2R	16730482	2R_16730482_SNP [dm3] 2R_20842977_SNP [dm6]	A	G	4.536e^-4	0.963	INTERGENIC
X	13549598	X_13549598_SNP [dm3] X_13655565_SNP [dm6]	C	A	4.552e^-4	0.963	SYNONYMOUS_CODING NFAT
X	13549607	X_13549607_SNP [dm3] X_13655574_SNP [dm6]	A	C	4.552e^-4	0.963	SYNONYMOUS_CODING NFAT
2R	16663363	2R_16663363_SNP [dm3] 2R_20775858_SNP [dm6]	A	G	4.557e^-4	0.963	UTR_3_PRIME CG43709 DOWNSTREAM CG13443 & 1 other
3L	10652675	3L_10652675_SNP [dm3] 3L_10659575_SNP [dm6]	T	G	4.557e^-4	0.963	UTR_5_PRIME CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	14742814	2R_14742814_SNP [dm3] 2R_18855309_SNP [dm6]	A	T	4.572e^-4	0.963	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	5656539	2L_5656539_SNP [dm3] 2L_5656539_SNP [dm6]	A	G	4.578e^-4	0.963	INTRON CG31646
2L	5657760	2L_5657760_SNP [dm3] 2L_5657760_SNP [dm6]	T	A	4.578e^-4	0.963	INTRON CG31646
2L	5658816	2L_5658816_SNP [dm3] 2L_5658816_SNP [dm6]	A	T	4.578e^-4	0.963	UPSTREAM CG31646 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	17988149	2R_17988149_SNP [dm3] 2R_22100644_SNP [dm6]	C	T	4.578e^-4	0.963	INTERGENIC
2R	17991935	2R_17991935_SNP [dm3] 2R_22104430_SNP [dm6]	T	C	4.578e^-4	0.963	SYNONYMOUS_CODING CG6613
2R	18569153	2R_18569153_INS [dm3] 2R_22681648_INS [dm6]	T	ATGC	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3659655	2R_3659655_SNP [dm3] 2R_7772150_SNP [dm6]	G	T	4.578e^-4	0.963	INTRON CG30497 & 1 other
2R	5119762	2R_5119762_SNP [dm3] 2R_9232257_SNP [dm6]	A	T	4.578e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	10730586	3L_10730586_SNP [dm3] 3L_10737486_SNP [dm6]	A	G	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10731903	3L_10731903_INS [dm3] 3L_10738803_INS [dm6]	T	TT	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10731910	3L_10731910_SNP [dm3] 3L_10738810_SNP [dm6]	A	G	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10732020	3L_10732020_SNP [dm3] 3L_10738920_SNP [dm6]	T	C	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10732025	3L_10732025_SNP [dm3] 3L_10738925_SNP [dm6]	T	G	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10732068	3L_10732068_SNP [dm3] 3L_10738968_SNP [dm6]	T	A	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10732412	3L_10732412_DEL [dm3] 3L_10739312_DEL [dm6]	CGAACAC	C	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_Trl
3L	12565167	3L_12565167_SNP [dm3] 3L_12572067_SNP [dm6]	C	A	4.578e^-4	0.963	SYNONYMOUS_CODING sowah	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	3089819	3L_3089819_SNP [dm3] 3L_3089819_SNP [dm6]	G	A	4.578e^-4	0.963	UTR_3_PRIME CG11486 UPSTREAM snRNA:U5:63BC	TF binding site BDTNP1_TFBS_twi
3L	3870668	3L_3870668_SNP [dm3] 3L_3870668_SNP [dm6]	C	T	4.578e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	4718575	3L_4718575_SNP [dm3] 3L_4718575_SNP [dm6]	C	T	4.578e^-4	0.963	INTRON RhoGEF64C
3L	8266470	3L_8266470_SNP [dm3] 3L_8273370_SNP [dm6]	C	T	4.578e^-4	0.963	INTRON Dscam4
3R	3600154	3R_3600154_SNP [dm3] 3R_7774432_SNP [dm6]	T	C	4.578e^-4	0.963	INTERGENIC
X	19062940	X_19062940_SNP [dm3] X_19168907_SNP [dm6]	A	G	4.578e^-4	0.963	UTR_3_PRIME Inx5 DOWNSTREAM mir-4959	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	7294180	X_7294180_SNP [dm3] X_7400147_SNP [dm6]	T	A	4.578e^-4	0.963	INTRON CG1677 & 1 other	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sbb
X	15904887	X_15904887_SNP [dm3] X_16010854_SNP [dm6]	C	T	4.582e^-4	0.963	SYNONYMOUS_CODING Muc14A
3L	2042079	3L_2042079_SNP [dm3] 3L_2042079_SNP [dm6]	C	T	4.585e^-4	0.963	INTRON sls
3L	4745401	3L_4745401_SNP [dm3] 3L_4745401_SNP [dm6]	T	C	4.603e^-4	0.963	DOWNSTREAM CR43882 INTRON RhoGEF64C
X	3548438	X_3548438_SNP [dm3] X_3654405_SNP [dm6]	G	A	4.612e^-4	0.963	INTRON AstA-R1
X	3548463	X_3548463_SNP [dm3] X_3654430_SNP [dm6]	G	A	4.612e^-4	0.963	INTRON AstA-R1
2L	18100108	2L_18100108_SNP [dm3] 2L_18100108_SNP [dm6]	G	A	4.612e^-4	0.963	INTERGENIC
X	20447302	X_20447302_SNP [dm3] X_20576275_SNP [dm6]	C	A	4.614e^-4	0.963	INTERGENIC	transposable element FlyBase
2R	15370129	2R_15370129_SNP [dm3] 2R_19482624_SNP [dm6]	A	G	4.627e^-4	0.963	DOWNSTREAM par-1 INTRON par-1
2L	2343284	2L_2343284_SNP [dm3] 2L_2343284_SNP [dm6]	G	T	4.631e^-4	0.963	INTRON CG9967 & 1 other
2L	2343291	2L_2343291_SNP [dm3] 2L_2343291_SNP [dm6]	C	A	4.631e^-4	0.963	INTRON CG9967 & 1 other
3L	1241601	3L_1241601_SNP [dm3] 3L_1241601_SNP [dm6]	A	C	4.636e^-4	0.963	UTR_3_PRIME CG9194 & 1 other
3L	5734386	3L_5734386_SNP [dm3] 3L_5741286_SNP [dm6]	A	G	4.665e^-4	0.963	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17757708	2R_17757708_SNP [dm3] 2R_21870203_SNP [dm6]	A	G	4.672e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	6526006	2R_6526006_SNP [dm3] 2R_10638501_SNP [dm6]	G	A	4.690e^-4	0.963	SYNONYMOUS_CODING CG11883	TF binding site mE1_TFBS_cad
2R	9645579	2R_9645579_SNP [dm3] 2R_13758074_SNP [dm6]	A	G	4.690e^-4	0.963	SYNONYMOUS_CODING CG6280	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16578844	2L_16578844_SNP [dm3] 2L_16578844_SNP [dm6]	T	G	4.691e^-4	0.963	INTRON CG42389
3L	12591576	3L_12591576_SNP [dm3] 3L_12598476_SNP [dm6]	T	C	4.692e^-4	0.963	INTERGENIC
3L	8287627	3L_8287627_SNP [dm3] 3L_8294527_SNP [dm6]	A	T	4.695e^-4	0.963	INTRON CG7201
3L	12591606	3L_12591606_SNP [dm3] 3L_12598506_SNP [dm6]	C	T	4.700e^-4	0.963	INTERGENIC
X	16175695	X_16175695_SNP [dm3] X_16281662_SNP [dm6]	A	C	4.705e^-4	0.963	INTRON eas
2R	7311856	2R_7311856_DEL [dm3] 2R_11424351_DEL [dm6]	CTT	C	4.731e^-4	0.963	INTRON Drip
3L	12591580	3L_12591580_SNP [dm3] 3L_12598480_SNP [dm6]	T	C	4.785e^-4	0.963	INTERGENIC
2R	7703428	2R_7703428_SNP [dm3] 2R_11815923_SNP [dm6]	C	T	4.787e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12736701	2L_12736701_SNP [dm3] 2L_12736701_SNP [dm6]	A	T	4.790e^-4	0.963	NON_SYNONYMOUS_CODING MRP INTRON MRP
2R	8435428	2R_8435428_SNP [dm3] 2R_12547923_SNP [dm6]	G	C	4.802e^-4	0.963	INTRON fra	TF binding site mE1_TFBS_cad
X	20796570	X_20796570_SNP [dm3] X_20925543_SNP [dm6]	C	T	4.814e^-4	0.963	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19079686	3L_19079686_SNP [dm3] 3L_19086586_SNP [dm6]	A	C	4.820e^-4	0.963	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4956380	2R_4956380_SNP [dm3] 2R_9068875_SNP [dm6]	T	C	4.833e^-4	0.963	UPSTREAM ana INTRON ana
3R	23537197	3R_23537197_SNP [dm3] 3R_27711475_SNP [dm6]	T	A	4.846e^-4	0.963	DOWNSTREAM CG12877 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	7254681	2L_7254681_SNP [dm3] 2L_7254681_SNP [dm6]	G	A	4.858e^-4	0.963	DOWNSTREAM Wnt4 INTERGENIC
2L	7254748	2L_7254748_DEL [dm3] 2L_7254748_DEL [dm6]	AA	A	4.858e^-4	0.963	DOWNSTREAM Wnt4 INTERGENIC
X	20465053	X_20465053_SNP [dm3] X_20594026_SNP [dm6]	T	C	4.870e^-4	0.963	INTRON RunxA
2R	19645980	2R_19645980_SNP [dm3] 2R_23758457_SNP [dm6]	A	T	4.871e^-4	0.963	INTRON CG9850
X	12587501	X_12587501_SNP [dm3] X_12693468_SNP [dm6]	A	G	4.879e^-4	0.963	INTRON Smr	TF binding site mE1_TFBS_inv
X	12587508	X_12587508_SNP [dm3] X_12693475_SNP [dm6]	A	G	4.879e^-4	0.963	INTRON Smr	TF binding site mE1_TFBS_inv
X	12587531	X_12587531_SNP [dm3] X_12693498_SNP [dm6]	T	C	4.879e^-4	0.963	INTRON Smr	TF binding site mE1_TFBS_inv
2L	18321491	2L_18321491_SNP [dm3] 2L_18321491_SNP [dm6]	A	C	4.882e^-4	0.963	INTRON Fas3	TF binding site mE1_TFBS_sens
2R	17315310	2R_17315310_SNP [dm3] 2R_21427805_SNP [dm6]	G	T	4.882e^-4	0.963	INTRON Sdc
3R	3515010	3R_3515010_SNP [dm3] 3R_7689288_SNP [dm6]	G	T	4.887e^-4	0.963	INTRON Nlg1
X	11894187	X_11894187_SNP [dm3] X_12000154_SNP [dm6]	T	C	4.887e^-4	0.963	INTRON fw
X	20796572	X_20796572_SNP [dm3] X_20925545_SNP [dm6]	A	G	4.899e^-4	0.963	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13188721	3L_13188721_SNP [dm3] 3L_13195621_SNP [dm6]	C	A	4.904e^-4	0.963	INTERGENIC
3R	10521802	3R_10521802_SNP [dm3] 3R_14696080_SNP [dm6]	C	T	4.934e^-4	0.963	INTRON Meltrin	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19060462	X_19060462_SNP [dm3] X_19166429_SNP [dm6]	C	G	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	19060489	X_19060489_SNP [dm3] X_19166456_SNP [dm6]	A	T	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	19060540	X_19060540_SNP [dm3] X_19166507_SNP [dm6]	T	G	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	19060542	X_19060542_SNP [dm3] X_19166509_SNP [dm6]	A	G	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	19060545	X_19060545_SNP [dm3] X_19166512_SNP [dm6]	C	T	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	19060613	X_19060613_SNP [dm3] X_19166580_SNP [dm6]	T	A	4.934e^-4	0.963	INTRON RhoGAP18B	TF binding site BDTNP1_TFBS_dl
X	15230684	X_15230684_SNP [dm3] X_15336651_SNP [dm6]	A	C	4.962e^-4	0.963	SYNONYMOUS_CODING HDAC6 UPSTREAM CR44998	TF binding site mE1_TFBS_chinmo
2L	12737792	2L_12737792_SNP [dm3] 2L_12737792_SNP [dm6]	T	A	4.976e^-4	0.963	INTRON MRP	TF binding site mE1_TFBS_cad
3L	2801510	3L_2801510_SNP [dm3] 3L_2801510_SNP [dm6]	T	A	4.978e^-4	0.963	INTRON CG43444
2L	2028644	2L_2028644_SNP [dm3] 2L_2028644_SNP [dm6]	C	T	4.985e^-4	0.963	SYNONYMOUS_CODING CG4238	TF binding site mE1_TFBS_cad
2L	12512643	2L_12512643_SNP [dm3] 2L_12512643_SNP [dm6]	C	T	4.992e^-4	0.963	INTRON bun
2L	20434250	2L_20434250_SNP [dm3] 2L_20434250_SNP [dm6]	C	G	4.992e^-4	0.963	INTRON CG31688
2L	6790881	2L_6790881_SNP [dm3] 2L_6790881_SNP [dm6]	T	G	4.992e^-4	0.963	SYNONYMOUS_CODING nrv2	TF binding site mE1_TFBS_Trl
2L	6794418	2L_6794418_DEL [dm3] 2L_6794418_DEL [dm6]	AGGTG	A	4.992e^-4	0.963	UTR_5_PRIME nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15236438	3L_15236438_SNP [dm3] 3L_15243338_SNP [dm6]	A	T	4.992e^-4	0.963	DOWNSTREAM Tollo INTERGENIC
X	11584935	X_11584935_SNP [dm3] X_11690902_SNP [dm6]	C	A	4.992e^-4	0.963	NON_SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11584944	X_11584944_SNP [dm3] X_11690911_SNP [dm6]	C	G	4.992e^-4	0.963	NON_SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	11584973	X_11584973_SNP [dm3] X_11690940_SNP [dm6]	G	C	4.992e^-4	0.963	NON_SYNONYMOUS_CODING bif UTR_3_PRIME bif INTRON bif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6792468	2L_6792468_SNP [dm3] 2L_6792468_SNP [dm6]	C	A	4.995e^-4	0.963	INTRON nrv2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	11357157	2L_11357157_SNP [dm3] 2L_11357157_SNP [dm6]	T	G	4.996e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	15264683	3L_15264683_SNP [dm3] 3L_15271583_SNP [dm6]	T	G	5.018e^-4	0.963	INTERGENIC
2L	16127972	2L_16127972_SNP [dm3] 2L_16127972_SNP [dm6]	A	G	5.032e^-4	0.963	INTERGENIC
3L	12591599	3L_12591599_SNP [dm3] 3L_12598499_SNP [dm6]	A	G	5.037e^-4	0.963	INTERGENIC
3L	12591604	3L_12591604_SNP [dm3] 3L_12598504_SNP [dm6]	G	A	5.037e^-4	0.963	INTERGENIC
2R	7703312	2R_7703312_SNP [dm3] 2R_11815807_SNP [dm6]	G	C	5.046e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_inv
2L	14580179	2L_14580179_SNP [dm3] 2L_14580179_SNP [dm6]	A	G	5.053e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	10578970	3R_10578970_SNP [dm3] 3R_14753248_SNP [dm6]	C	T	5.069e^-4	0.963	NON_SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10865045	X_10865045_SNP [dm3] X_10971012_SNP [dm6]	A	G	5.071e^-4	0.963	INTRON CG42339
2L	1339216	2L_1339216_SNP [dm3] 2L_1339216_SNP [dm6]	A	T	5.083e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2482501	3L_2482501_SNP [dm3] 3L_2482501_SNP [dm6]	T	C	5.096e^-4	0.963	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	18463195	X_18463195_SNP [dm3] X_18569162_SNP [dm6]	A	G	5.098e^-4	0.963	INTRON Bx	TF binding site mE1_TFBS_chinmo
3L	6433743	3L_6433743_SNP [dm3] 3L_6440643_SNP [dm6]	C	A	5.099e^-4	0.963	INTRON CG42747
2R	14663073	2R_14663073_SNP [dm3] 2R_18775568_SNP [dm6]	A	G	5.102e^-4	0.963	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	16020982	2R_16020982_SNP [dm3] 2R_20133477_SNP [dm6]	A	C	5.146e^-4	0.963	INTERGENIC
3L	9776990	3L_9776990_SNP [dm3] 3L_9783890_SNP [dm6]	C	T	5.149e^-4	0.963	SYNONYMOUS_CODING CG8177	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2804694	3L_2804694_SNP [dm3] 3L_2804694_SNP [dm6]	C	T	5.157e^-4	0.963	INTRON CG43444	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	15288448	2R_15288448_SNP [dm3] 2R_19400943_SNP [dm6]	C	T	5.159e^-4	0.963	SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2L	11320085	2L_11320085_DEL [dm3] 2L_11320085_DEL [dm6]	TACAAT	G	5.170e^-4	0.963	DOWNSTREAM CR44583 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11320094	2L_11320094_SNP [dm3] 2L_11320094_SNP [dm6]	T	G	5.170e^-4	0.963	DOWNSTREAM CR44583 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	2899624	X_2899624_SNP [dm3] X_3005591_SNP [dm6]	C	T	5.174e^-4	0.963	INTRON kirre
2L	4682811	2L_4682811_SNP [dm3] 2L_4682811_SNP [dm6]	T	A	5.177e^-4	0.963	UTR_5_PRIME CG11929 DOWNSTREAM Bsg25A
3R	26473493	3R_26473493_SNP [dm3] 3R_30647771_SNP [dm6]	A	T	5.180e^-4	0.963	NON_SYNONYMOUS_CODING PH4alphaPV
X	14764073	X_14764073_SNP [dm3] X_14870040_SNP [dm6]	G	A	5.180e^-4	0.963	INTRON Flo2 & 1 other
3L	974390	3L_974390_SNP [dm3] 3L_974390_SNP [dm6]	A	C	5.183e^-4	0.963	INTRON Glut1
3L	2679074	3L_2679074_SNP [dm3] 3L_2679074_SNP [dm6]	G	T	5.204e^-4	0.963	SYNONYMOUS_CODING Fife	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16711596	2L_16711596_SNP [dm3] 2L_16711596_SNP [dm6]	C	G	5.223e^-4	0.963	INTRON CG31808	TF binding site mE1_TFBS_inv
2R	15290987	2R_15290987_SNP [dm3] 2R_19403482_SNP [dm6]	G	C	5.224e^-4	0.963	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	2805420	3L_2805420_SNP [dm3] 3L_2805420_SNP [dm6]	C	A	5.233e^-4	0.963	INTRON CG43444
3L	2806653	3L_2806653_SNP [dm3] 3L_2806653_SNP [dm6]	T	A	5.233e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	2806733	3L_2806733_SNP [dm3] 3L_2806733_SNP [dm6]	A	T	5.233e^-4	0.963	INTRON CG43444	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	5215054	3L_5215054_SNP [dm3] 3L_5221954_SNP [dm6]	C	A	5.253e^-4	0.963	INTRON shep
2R	16180752	2R_16180752_SNP [dm3] 2R_20293247_SNP [dm6]	T	C	5.261e^-4	0.963	UPSTREAM CR44639 DOWNSTREAM CR44638 INTERGENIC
2L	10059818	2L_10059818_SNP [dm3] 2L_10059818_SNP [dm6]	A	T	5.262e^-4	0.963	UTR_3_PRIME Pen UPSTREAM Spn31A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2L	17959638	2L_17959638_SNP [dm3] 2L_17959638_SNP [dm6]	T	G	5.263e^-4	0.963	INTERGENIC
3R	20699755	3R_20699755_SNP [dm3] 3R_24874033_SNP [dm6]	C	T	5.277e^-4	0.963	INTRON CG3744	TF binding site mE1_TFBS_inv
3L	19236070	3L_19236070_SNP [dm3] 3L_19242970_SNP [dm6]	T	G	5.289e^-4	0.963	INTERGENIC
2L	8642363	2L_8642363_SNP [dm3] 2L_8642363_SNP [dm6]	C	T	5.299e^-4	0.963	INTRON Sema-1a
2L	16736847	2L_16736847_SNP [dm3] 2L_16736847_SNP [dm6]	C	T	5.302e^-4	0.963	NON_SYNONYMOUS_CODING glu
2R	19178336	2R_19178336_SNP [dm3] 2R_23290813_SNP [dm6]	C	T	5.303e^-4	0.963	EXON CR44783
2R	19178535	2R_19178535_SNP [dm3] 2R_23291012_SNP [dm6]	G	A	5.303e^-4	0.963	EXON CR44783
2R	19178990	2R_19178990_SNP [dm3] 2R_23291467_SNP [dm6]	G	T	5.303e^-4	0.963	UPSTREAM CR44783 INTERGENIC
2R	19179002	2R_19179002_INS [dm3] 2R_23291479_INS [dm6]	A	ACATCTCCATCA...	5.303e^-4	0.963	UPSTREAM CR44783 INTERGENIC
2R	19179066	2R_19179066_SNP [dm3] 2R_23291543_SNP [dm6]	A	C	5.303e^-4	0.963	UPSTREAM CR44783 INTERGENIC
2R	4956460	2R_4956460_SNP [dm3] 2R_9068955_SNP [dm6]	A	T	5.312e^-4	0.963	UPSTREAM ana INTRON ana
X	5863427	X_5863427_SNP [dm3] X_5969394_SNP [dm6]	C	T	5.312e^-4	0.963	INTRON Grip
2L	11331124	2L_11331124_SNP [dm3] 2L_11331124_SNP [dm6]	G	A	5.317e^-4	0.963	DOWNSTREAM CR44584 INTERGENIC
2R	19618236	2R_19618236_SNP [dm3] 2R_23730713_SNP [dm6]	G	T	5.324e^-4	0.963	INTRON Sesn
2L	4344360	2L_4344360_SNP [dm3] 2L_4344360_SNP [dm6]	A	G	5.324e^-4	0.963	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005
2L	19265570	2L_19265570_SNP [dm3] 2L_19265570_SNP [dm6]	C	T	5.341e^-4	0.963	INTERGENIC
3R	11904031	3R_11904031_SNP [dm3] 3R_16078309_SNP [dm6]	A	T	5.348e^-4	0.963	DOWNSTREAM CG32855 INTRON Mhcl
X	14493635	X_14493635_DEL [dm3] X_14599602_DEL [dm6]	AA	A	5.349e^-4	0.963	INTRON CG9413
2L	14580146	2L_14580146_SNP [dm3] 2L_14580146_SNP [dm6]	A	T	5.351e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14580153	2L_14580153_SNP [dm3] 2L_14580153_SNP [dm6]	T	A	5.351e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	14580200	2L_14580200_SNP [dm3] 2L_14580200_SNP [dm6]	T	A	5.351e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	6489704	2R_6489704_INS [dm3] 2R_10602199_INS [dm6]	GTATATCG	TACTAGTGA	5.368e^-4	0.963	INTRON psq	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	6128715	2L_6128715_SNP [dm3] 2L_6128715_SNP [dm6]	C	A	5.371e^-4	0.963	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	907227	3R_907227_SNP [dm3] 3R_5081505_SNP [dm6]	G	T	5.377e^-4	0.963	UTR_3_PRIME corto
2L	3377825	2L_3377825_SNP [dm3] 2L_3377825_SNP [dm6]	T	C	5.378e^-4	0.963	INTRON Ptpa	TF binding site mE1_TFBS_sens
X	20796638	X_20796638_SNP [dm3] X_20925611_SNP [dm6]	C	T	5.401e^-4	0.963	UPSTREAM shakB INTRON shakB	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11483574	2R_11483574_SNP [dm3] 2R_15596069_SNP [dm6]	T	C	5.408e^-4	0.963	INTERGENIC
2R	11483577	2R_11483577_SNP [dm3] 2R_15596072_SNP [dm6]	G	C	5.408e^-4	0.963	INTERGENIC
2R	11483584	2R_11483584_SNP [dm3] 2R_15596079_SNP [dm6]	T	G	5.408e^-4	0.963	INTERGENIC
3L	10611704	3L_10611704_SNP [dm3] 3L_10618604_SNP [dm6]	T	C	5.408e^-4	0.963	INTERGENIC
2R	6504516	2R_6504516_SNP [dm3] 2R_10617011_SNP [dm6]	T	A	5.415e^-4	0.963	UTR_3_PRIME psq UPSTREAM CG11883 DOWNSTREAM psq
2R	1065508	2R_1065508_SNP [dm3] 2R_5178003_SNP [dm6]	A	G	5.433e^-4	0.963	UTR_3_PRIME Nipped-A
2L	3701704	2L_3701704_SNP [dm3] 2L_3701704_SNP [dm6]	G	A	5.434e^-4	0.963	UPSTREAM CG43145 & 1 other DOWNSTREAM Sfp24C1 & 1 other INTERGENIC
2R	6405466	2R_6405466_SNP [dm3] 2R_10517961_SNP [dm6]	G	A	5.442e^-4	0.963	SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola
3R	7900029	3R_7900029_SNP [dm3] 3R_12074307_SNP [dm6]	T	C	5.444e^-4	0.963	NON_SYNONYMOUS_CODING CG14741 INTRON CG14741
2R	6670662	2R_6670662_DEL [dm3] 2R_10783157_DEL [dm6]	TCAAAATGTCT...	T	5.446e^-4	0.963	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	9084599	2L_9084599_SNP [dm3] 2L_9084599_SNP [dm6]	G	A	5.463e^-4	0.963	INTRON Toll-4
2L	3643723	2L_3643723_SNP [dm3] 2L_3643723_SNP [dm6]	A	G	5.468e^-4	0.963	INTRON for	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8802442	3L_8802442_SNP [dm3] 3L_8809342_SNP [dm6]	G	C	5.476e^-4	0.963	DOWNSTREAM CG32024 & 1 other INTERGENIC
3L	11638440	3L_11638440_SNP [dm3] 3L_11645340_SNP [dm6]	C	A	5.480e^-4	0.963	NON_SYNONYMOUS_CODING CG6071 DOWNSTREAM RIOK1
3L	13235421	3L_13235421_SNP [dm3] 3L_13242321_SNP [dm6]	G	C	5.488e^-4	0.963	INTRON caps
3L	13235429	3L_13235429_SNP [dm3] 3L_13242329_SNP [dm6]	G	A	5.488e^-4	0.963	INTRON caps
3L	13235432	3L_13235432_SNP [dm3] 3L_13242332_SNP [dm6]	A	T	5.488e^-4	0.963	INTRON caps
3R	22528828	3R_22528828_SNP [dm3] 3R_26703106_SNP [dm6]	C	A	5.491e^-4	0.963	INTRON amon	TF binding site mE1_TFBS_chinmo
3R	22530369	3R_22530369_SNP [dm3] 3R_26704647_SNP [dm6]	G	T	5.491e^-4	0.963	INTRON amon
3L	10731925	3L_10731925_SNP [dm3] 3L_10738825_SNP [dm6]	G	T	5.506e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	6603351	2L_6603351_SNP [dm3] 2L_6603351_SNP [dm6]	G	A	5.521e^-4	0.963	INTERGENIC
2R	14722522	2R_14722522_SNP [dm3] 2R_18835017_SNP [dm6]	T	A	5.524e^-4	0.963	UPSTREAM CG15083 & 1 other INTERGENIC
2L	12293160	2L_12293160_SNP [dm3] 2L_12293160_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON aret	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	12293703	2L_12293703_SNP [dm3] 2L_12293703_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON aret	TF binding site mE1_TFBS_HSA
2L	12399390	2L_12399390_SNP [dm3] 2L_12399390_SNP [dm6]	T	C	5.524e^-4	0.963	SYNONYMOUS_CODING Pkd2
2L	12871239	2L_12871239_SNP [dm3] 2L_12871239_SNP [dm6]	T	A	5.524e^-4	0.963	INTERGENIC
2L	13271026	2L_13271026_SNP [dm3] 2L_13271026_SNP [dm6]	T	G	5.524e^-4	0.963	INTRON CG44085
2L	13271027	2L_13271027_SNP [dm3] 2L_13271027_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON CG44085
2L	13271050	2L_13271050_SNP [dm3] 2L_13271050_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON CG44085
2L	13271065	2L_13271065_SNP [dm3] 2L_13271065_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON CG44085
2L	13280672	2L_13280672_SNP [dm3] 2L_13280672_SNP [dm6]	A	T	5.524e^-4	0.963	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13281144	2L_13281144_SNP [dm3] 2L_13281144_SNP [dm6]	G	A	5.524e^-4	0.963	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13281145	2L_13281145_SNP [dm3] 2L_13281145_SNP [dm6]	T	A	5.524e^-4	0.963	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13676260	2L_13676260_SNP [dm3] 2L_13676260_SNP [dm6]	C	T	5.524e^-4	0.963	DOWNSTREAM CG31814 INTERGENIC
2L	13676275	2L_13676275_SNP [dm3] 2L_13676275_SNP [dm6]	A	C	5.524e^-4	0.963	DOWNSTREAM CG31814 INTERGENIC
2L	16375566	2L_16375566_SNP [dm3] 2L_16375566_SNP [dm6]	A	G	5.524e^-4	0.963	INTERGENIC
2L	20854635	2L_20854635_SNP [dm3] 2L_20854635_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON twit
2L	2120685	2L_2120685_DEL [dm3] 2L_2120685_DEL [dm6]	CTACAAGC	C	5.524e^-4	0.963	INTERGENIC
2L	2809737	2L_2809737_SNP [dm3] 2L_2809737_SNP [dm6]	C	T	5.524e^-4	0.963	NON_SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	2978885	2L_2978885_SNP [dm3] 2L_2978885_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING CG9643 DOWNSTREAM CG3165 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	3795149	2L_3795149_SNP [dm3] 2L_3795149_SNP [dm6]	G	A	5.524e^-4	0.963	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3868879	2L_3868879_SNP [dm3] 2L_3868879_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
2L	3869005	2L_3869005_SNP [dm3] 2L_3869005_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING Cep97	TF binding site mE1_TFBS_sens
2L	4206643	2L_4206643_SNP [dm3] 2L_4206643_SNP [dm6]	C	A	5.524e^-4	0.963	NON_SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	4799903	2L_4799903_SNP [dm3] 2L_4799903_SNP [dm6]	T	G	5.524e^-4	0.963	INTRON Clect27	TF binding site mE1_TFBS_cad
2L	6450551	2L_6450551_SNP [dm3] 2L_6450551_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON retm
2L	6450557	2L_6450557_SNP [dm3] 2L_6450557_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON retm	TF binding site mE1_TFBS_cad
2L	6471120	2L_6471120_SNP [dm3] 2L_6471120_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON mmy
2L	6471157	2L_6471157_SNP [dm3] 2L_6471157_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON mmy
2L	6629093	2L_6629093_SNP [dm3] 2L_6629093_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON Oatp26F	TF binding site mE1_TFBS_cad
2L	6629141	2L_6629141_SNP [dm3] 2L_6629141_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON Oatp26F	TF binding site mE1_TFBS_cad
2L	6774898	2L_6774898_SNP [dm3] 2L_6774898_SNP [dm6]	A	C	5.524e^-4	0.963	UPSTREAM CG17378 INTRON CG17378
2L	6774900	2L_6774900_SNP [dm3] 2L_6774900_SNP [dm6]	C	G	5.524e^-4	0.963	UPSTREAM CG17378 INTRON CG17378
2L	6774939	2L_6774939_SNP [dm3] 2L_6774939_SNP [dm6]	A	T	5.524e^-4	0.963	UPSTREAM CG17378 INTRON CG17378
2L	6782593	2L_6782593_SNP [dm3] 2L_6782593_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON nrv1
2L	6782872	2L_6782872_SNP [dm3] 2L_6782872_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON nrv1
2L	6782943	2L_6782943_DEL [dm3] 2L_6782943_DEL [dm6]	TTTGAAACCAT...	T	5.524e^-4	0.963	INTRON nrv1
2L	6783027	2L_6783027_SNP [dm3] 2L_6783027_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON nrv1
2L	6783229	2L_6783229_SNP [dm3] 2L_6783229_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON nrv1
2L	6787061	2L_6787061_SNP [dm3] 2L_6787061_SNP [dm6]	G	A	5.524e^-4	0.963	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787067	2L_6787067_SNP [dm3] 2L_6787067_SNP [dm6]	A	T	5.524e^-4	0.963	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6787080	2L_6787080_SNP [dm3] 2L_6787080_SNP [dm6]	T	A	5.524e^-4	0.963	UPSTREAM nrv1 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	6788118	2L_6788118_SNP [dm3] 2L_6788118_SNP [dm6]	T	A	5.524e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6788123	2L_6788123_SNP [dm3] 2L_6788123_SNP [dm6]	G	C	5.524e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6788908	2L_6788908_SNP [dm3] 2L_6788908_SNP [dm6]	T	G	5.524e^-4	0.963	DOWNSTREAM nrv2 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
2L	6789761	2L_6789761_SNP [dm3] 2L_6789761_SNP [dm6]	T	A	5.524e^-4	0.963	DOWNSTREAM nrv2 INTERGENIC	regulatory region REDfly_CRMs
2L	6790987	2L_6790987_SNP [dm3] 2L_6790987_SNP [dm6]	T	G	5.524e^-4	0.963	INTRON nrv2	TF binding site mE1_TFBS_Trl
2L	6792338	2L_6792338_DEL [dm3] 2L_6792338_DEL [dm6]	GCTGGAG	G	5.524e^-4	0.963	INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793534	2L_6793534_SNP [dm3] 2L_6793534_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6793537	2L_6793537_SNP [dm3] 2L_6793537_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON nrv2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	6795341	2L_6795341_SNP [dm3] 2L_6795341_SNP [dm6]	C	G	5.524e^-4	0.963	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_sens mE1_TFBS_Trl
2L	6795487	2L_6795487_SNP [dm3] 2L_6795487_SNP [dm6]	T	C	5.524e^-4	0.963	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	6795526	2L_6795526_DEL [dm3] 2L_6795526_DEL [dm6]	TATTATACAAA...	C	5.524e^-4	0.963	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	6795587	2L_6795587_SNP [dm3] 2L_6795587_SNP [dm6]	T	A	5.524e^-4	0.963	UPSTREAM nrv2 INTRON nrv2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl
2L	6801491	2L_6801491_SNP [dm3] 2L_6801491_SNP [dm6]	C	T	5.524e^-4	0.963	UTR_3_PRIME CG17377 UPSTREAM CG17376	regulatory region REDfly_CRMs
2L	7822300	2L_7822300_SNP [dm3] 2L_7822300_SNP [dm6]	C	G	5.524e^-4	0.963	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
2L	7822326	2L_7822326_SNP [dm3] 2L_7822326_SNP [dm6]	G	A	5.524e^-4	0.963	UPSTREAM CR45008 INTRON CG7115	TF binding site BDTNP1_TFBS_dl
2L	8154848	2L_8154848_SNP [dm3] 2L_8154848_SNP [dm6]	G	A	5.524e^-4	0.963	DOWNSTREAM CG43394 INTRON CG8552 & 1 other
2L	8154874	2L_8154874_SNP [dm3] 2L_8154874_SNP [dm6]	A	T	5.524e^-4	0.963	DOWNSTREAM CG43394 INTRON CG8552 & 1 other
2L	8154892	2L_8154892_DEL [dm3] 2L_8154892_DEL [dm6]	GTG	G	5.524e^-4	0.963	DOWNSTREAM CG43394 INTRON CG8552 & 1 other
2L	8154912	2L_8154912_SNP [dm3] 2L_8154912_SNP [dm6]	A	T	5.524e^-4	0.963	DOWNSTREAM CG43394 INTRON CG8552 & 1 other
2L	8157658	2L_8157658_SNP [dm3] 2L_8157658_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING CG43394 UPSTREAM CG8552 INTRON CG8552	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2L	8159052	2L_8159052_SNP [dm3] 2L_8159052_SNP [dm6]	G	A	5.524e^-4	0.963	UPSTREAM Rbsn-5 DOWNSTREAM CG43394 INTRON CG8552
2L	8161130	2L_8161130_SNP [dm3] 2L_8161130_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING Rbsn-5 DOWNSTREAM CG8498	TF binding site mE1_TFBS_sens
2L	8164013	2L_8164013_SNP [dm3] 2L_8164013_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON Piezo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	8619037	2L_8619037_SNP [dm3] 2L_8619037_SNP [dm6]	C	A	5.524e^-4	0.963	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	8619173	2L_8619173_INS [dm3] 2L_8619173_INS [dm6]	G	GT	5.524e^-4	0.963	UPSTREAM tRNA:CR31602 INTRON Sema-1a
2L	8620971	2L_8620971_SNP [dm3] 2L_8620971_SNP [dm6]	C	T	5.524e^-4	0.963	DOWNSTREAM tRNA:CR31602 INTRON Sema-1a
2R	10985024	2R_10985024_SNP [dm3] 2R_15097519_SNP [dm6]	T	G	5.524e^-4	0.963	INTERGENIC
2R	11178205	2R_11178205_SNP [dm3] 2R_15290700_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON Trpm
2R	11223576	2R_11223576_SNP [dm3] 2R_15336071_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON Hr51	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11824763	2R_11824763_SNP [dm3] 2R_15937258_SNP [dm6]	C	A	5.524e^-4	0.963	UTR_3_PRIME Mlf INTRON Mlf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12031666	2R_12031666_SNP [dm3] 2R_16144161_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING Aats-cys	TF binding site mE1_TFBS_sens
2R	14309586	2R_14309586_SNP [dm3] 2R_18422081_SNP [dm6]	G	T	5.524e^-4	0.963	UPSTREAM CG5174 DOWNSTREAM Dp1 INTRON CG5174
2R	14347810	2R_14347810_SNP [dm3] 2R_18460305_SNP [dm6]	C	T	5.524e^-4	0.963	NON_SYNONYMOUS_CODING CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14347813	2R_14347813_SNP [dm3] 2R_18460308_SNP [dm6]	T	C	5.524e^-4	0.963	NON_SYNONYMOUS_CODING CG30116 INTRON CG30116	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1577296	2R_1577296_SNP [dm3] 2R_5689791_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON scaf
2R	1577300	2R_1577300_SNP [dm3] 2R_5689795_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON scaf
2R	17904982	2R_17904982_SNP [dm3] 2R_22017477_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON CG34370
2R	17905690	2R_17905690_SNP [dm3] 2R_22018185_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON CG34370
2R	17905708	2R_17905708_SNP [dm3] 2R_22018203_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON CG34370
2R	17906548	2R_17906548_SNP [dm3] 2R_22019043_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON CG34370
2R	18024940	2R_18024940_SNP [dm3] 2R_22137435_SNP [dm6]	A	T	5.524e^-4	0.963	UTR_5_PRIME a INTRON a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2R	18025185	2R_18025185_SNP [dm3] 2R_22137680_SNP [dm6]	T	C	5.524e^-4	0.963	UTR_5_PRIME a INTRON a
2R	18153429	2R_18153429_SNP [dm3] 2R_22265924_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON dve	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18679077	2R_18679077_SNP [dm3] 2R_22791572_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON CG42260
2R	19537048	2R_19537048_INS [dm3] 2R_23649525_INS [dm6]	G	AGA	5.524e^-4	0.963	INTRON retn	TF binding site BDTNP1_TFBS_dl
2R	19619710	2R_19619710_SNP [dm3] 2R_23732187_SNP [dm6]	C	G	5.524e^-4	0.963	SYNONYMOUS_CODING Sesn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	19687941	2R_19687941_SNP [dm3] 2R_23800418_SNP [dm6]	T	A	5.524e^-4	0.963	INTERGENIC
2R	19691521	2R_19691521_SNP [dm3] 2R_23803998_SNP [dm6]	G	T	5.524e^-4	0.963	UPSTREAM CG5539 DOWNSTREAM CG30177 & 1 other INTERGENIC
2R	19696241	2R_19696241_SNP [dm3] 2R_23808718_SNP [dm6]	T	G	5.524e^-4	0.963	SYNONYMOUS_CODING Ssrp UPSTREAM CG5543	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	20130950	2R_20130950_SNP [dm3] 2R_24243427_SNP [dm6]	C	A	5.524e^-4	0.963	UTR_5_PRIME nord	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20131769	2R_20131769_SNP [dm3] 2R_24244246_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON nord
2R	20131826	2R_20131826_SNP [dm3] 2R_24244303_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON nord
2R	20131900	2R_20131900_SNP [dm3] 2R_24244377_SNP [dm6]	G	T	5.524e^-4	0.963	INTRON nord
2R	20132190	2R_20132190_SNP [dm3] 2R_24244667_SNP [dm6]	A	G	5.524e^-4	0.963	UTR_5_PRIME nord	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20151023	2R_20151023_SNP [dm3] 2R_24263500_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON CG3376	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	3723025	2R_3723025_SNP [dm3] 2R_7835520_SNP [dm6]	A	G	5.524e^-4	0.963	UTR_3_PRIME Dgk DOWNSTREAM Atg10 & 1 other
2R	3727574	2R_3727574_DEL [dm3] 2R_7840069_DEL [dm6]	GG	G	5.524e^-4	0.963	INTRON Dgk
2R	4500331	2R_4500331_SNP [dm3] 2R_8612826_SNP [dm6]	A	T	5.524e^-4	0.963	DOWNSTREAM rgr INTRON CG8642
2R	5118133	2R_5118133_SNP [dm3] 2R_9230628_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5118846	2R_5118846_SNP [dm3] 2R_9231341_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	5119493	2R_5119493_SNP [dm3] 2R_9231988_SNP [dm6]	T	G	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5119497	2R_5119497_DEL [dm3] 2R_9231992_DEL [dm6]	TG	A	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	5119519	2R_5119519_SNP [dm3] 2R_9232014_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119522	2R_5119522_SNP [dm3] 2R_9232017_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119534	2R_5119534_SNP [dm3] 2R_9232029_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119539	2R_5119539_SNP [dm3] 2R_9232034_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119542	2R_5119542_DEL [dm3] 2R_9232037_DEL [dm6]	AA	A	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119546	2R_5119546_SNP [dm3] 2R_9232041_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119564	2R_5119564_SNP [dm3] 2R_9232059_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	5119876	2R_5119876_SNP [dm3] 2R_9232371_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON hig	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	6745532	2R_6745532_SNP [dm3] 2R_10858027_SNP [dm6]	G	C	5.524e^-4	0.963	INTRON CG30015
2R	6799802	2R_6799802_SNP [dm3] 2R_10912297_SNP [dm6]	T	C	5.524e^-4	0.963	INTERGENIC
2R	7134888	2R_7134888_SNP [dm3] 2R_11247383_SNP [dm6]	C	A	5.524e^-4	0.963	UPSTREAM CG34227 DOWNSTREAM CR30029 INTERGENIC	transposable element FlyBase
2R	7134894	2R_7134894_SNP [dm3] 2R_11247389_SNP [dm6]	G	C	5.524e^-4	0.963	UPSTREAM CG34227 DOWNSTREAM CR30029 INTERGENIC	transposable element FlyBase
2R	7446794	2R_7446794_SNP [dm3] 2R_11559289_SNP [dm6]	A	T	5.524e^-4	0.963	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	7574576	2R_7574576_SNP [dm3] 2R_11687071_SNP [dm6]	A	T	5.524e^-4	0.963	UPSTREAM CG13196 INTRON Buffy	regulatory region REDfly_CRMs
2R	7690985	2R_7690985_SNP [dm3] 2R_11803480_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON ths	TF binding site mE1_TFBS_cad
2R	7691008	2R_7691008_SNP [dm3] 2R_11803503_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON ths	TF binding site mE1_TFBS_cad
3L	10435312	3L_10435312_SNP [dm3] 3L_10442212_SNP [dm6]	C	A	5.524e^-4	0.963	INTERGENIC
3L	10435422	3L_10435422_SNP [dm3] 3L_10442322_SNP [dm6]	C	T	5.524e^-4	0.963	INTERGENIC
3L	10986803	3L_10986803_DEL [dm3] 3L_10993703_DEL [dm6]	TCAAAAACGCGCTCAAG...	T	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl
3L	10986866	3L_10986866_SNP [dm3] 3L_10993766_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10986887	3L_10986887_SNP [dm3] 3L_10993787_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10987109	3L_10987109_SNP [dm3] 3L_10994009_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10987113	3L_10987113_SNP [dm3] 3L_10994013_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10987239	3L_10987239_SNP [dm3] 3L_10994139_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON klu	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11180641	3L_11180641_SNP [dm3] 3L_11187541_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON GlcAT-P
3L	12499509	3L_12499509_SNP [dm3] 3L_12506409_SNP [dm6]	G	A	5.524e^-4	0.963	SYNONYMOUS_CODING CG10654 DOWNSTREAM vih	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13383313	3L_13383313_SNP [dm3] 3L_13390213_SNP [dm6]	A	T	5.524e^-4	0.963	UPSTREAM Poc1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13558090	3L_13558090_SNP [dm3] 3L_13564990_SNP [dm6]	G	C	5.524e^-4	0.963	INTRON bru-3
3L	14135612	3L_14135612_SNP [dm3] 3L_14142512_SNP [dm6]	T	C	5.524e^-4	0.963	INTERGENIC	regulatory region REDfly_CRMs
3L	15349975	3L_15349975_SNP [dm3] 3L_15356875_SNP [dm6]	T	A	5.524e^-4	0.963	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	16425224	3L_16425224_SNP [dm3] 3L_16432124_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG33158 & 1 other
3L	17401771	3L_17401771_SNP [dm3] 3L_17408671_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON blot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18188442	3L_18188442_SNP [dm3] 3L_18195342_SNP [dm6]	A	T	5.524e^-4	0.963	UPSTREAM CR45234 INTERGENIC
3L	18188606	3L_18188606_SNP [dm3] 3L_18195506_SNP [dm6]	G	A	5.524e^-4	0.963	UPSTREAM CR45234 INTERGENIC
3L	20148520	3L_20148520_SNP [dm3] 3L_20155420_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON CG42674
3L	2146499	3L_2146499_INS [dm3] 3L_2146499_INS [dm6]	T	TT	5.524e^-4	0.963	INTRON zormin	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2146502	3L_2146502_SNP [dm3] 3L_2146502_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON zormin	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2146787	3L_2146787_SNP [dm3] 3L_2146787_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON zormin	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2147049	3L_2147049_SNP [dm3] 3L_2147049_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON zormin
3L	3306724	3L_3306724_SNP [dm3] 3L_3306724_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON ZnT63C	TF binding site BDTNP1_TFBS_dl
3L	4266161	3L_4266161_SNP [dm3] 3L_4266161_SNP [dm6]	T	C	5.524e^-4	0.963	DOWNSTREAM CG33764 INTRON CG1273
3L	4310772	3L_4310772_SNP [dm3] 3L_4310772_SNP [dm6]	G	T	5.524e^-4	0.963	INTERGENIC
3L	4310837	3L_4310837_SNP [dm3] 3L_4310837_SNP [dm6]	A	T	5.524e^-4	0.963	INTERGENIC
3L	4310846	3L_4310846_SNP [dm3] 3L_4310846_SNP [dm6]	A	T	5.524e^-4	0.963	INTERGENIC
3L	4310875	3L_4310875_INS [dm3] 3L_4310875_INS [dm6]	T	TC	5.524e^-4	0.963	INTERGENIC
3L	5991831	3L_5991831_SNP [dm3] 3L_5998731_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON PVRAP
3L	5991916	3L_5991916_SNP [dm3] 3L_5998816_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON PVRAP
3L	7024371	3L_7024371_SNP [dm3] 3L_7031271_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON Mp
3L	7265001	3L_7265001_SNP [dm3] 3L_7271901_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON unc-13-4A
3L	7290729	3L_7290729_SNP [dm3] 3L_7297629_SNP [dm6]	G	A	5.524e^-4	0.963	INTRON unc-13-4A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7290733	3L_7290733_SNP [dm3] 3L_7297633_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON unc-13-4A	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7523460	3L_7523460_SNP [dm3] 3L_7530360_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON lqf
3L	868576	3L_868576_SNP [dm3] 3L_868576_SNP [dm6]	G	A	5.524e^-4	0.963	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	868579	3L_868579_SNP [dm3] 3L_868579_SNP [dm6]	C	T	5.524e^-4	0.963	SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	870031	3L_870031_SNP [dm3] 3L_870031_SNP [dm6]	A	C	5.524e^-4	0.963	NON_SYNONYMOUS_CODING CG12502	TF binding site mE1_TFBS_chinmo
3L	874320	3L_874320_SNP [dm3] 3L_874320_SNP [dm6]	C	A	5.524e^-4	0.963	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	874910	3L_874910_SNP [dm3] 3L_874910_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG32479	TF binding site mE1_TFBS_cad
3L	874923	3L_874923_SNP [dm3] 3L_874923_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON CG32479	TF binding site mE1_TFBS_cad
3L	875176	3L_875176_INS [dm3] 3L_875176_INS [dm6]	A	AGCA	5.524e^-4	0.963		TF binding site mE1_TFBS_cad
3L	875189	3L_875189_SNP [dm3] 3L_875189_SNP [dm6]	G	A	5.524e^-4	0.963	SYNONYMOUS_CODING CG32479	TF binding site mE1_TFBS_cad
3L	875553	3L_875553_INS [dm3] 3L_875553_INS [dm6]	A	CGGGG	5.524e^-4	0.963	INTRON CG32479
3L	875960	3L_875960_SNP [dm3] 3L_875960_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG32479
3L	876260	3L_876260_SNP [dm3] 3L_876260_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON CG32479
3L	879863	3L_879863_SNP [dm3] 3L_879863_SNP [dm6]	A	G	5.524e^-4	0.963	SYNONYMOUS_CODING CG13907 INTRON CG32479	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	881104	3L_881104_SNP [dm3] 3L_881104_SNP [dm6]	C	G	5.524e^-4	0.963	UTR_5_PRIME CG13907 UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	881579	3L_881579_SNP [dm3] 3L_881579_SNP [dm6]	G	C	5.524e^-4	0.963	START_GAINED CG13907 UTR_5_PRIME CG13907 UPSTREAM CG13907 INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	883075	3L_883075_SNP [dm3] 3L_883075_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG32479	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	13095176	3R_13095176_SNP [dm3] 3R_17269454_SNP [dm6]	G	A	5.524e^-4	0.963	DOWNSTREAM CR44258 INTERGENIC
3R	13095187	3R_13095187_SNP [dm3] 3R_17269465_SNP [dm6]	T	G	5.524e^-4	0.963	DOWNSTREAM CR44258 INTERGENIC
3R	13095226	3R_13095226_SNP [dm3] 3R_17269504_SNP [dm6]	T	A	5.524e^-4	0.963	DOWNSTREAM CR44258 INTERGENIC
3R	13103927	3R_13103927_SNP [dm3] 3R_17278205_SNP [dm6]	C	G	5.524e^-4	0.963	INTERGENIC
3R	2200042	3R_2200042_SNP [dm3] 3R_6374320_SNP [dm6]	G	T	5.524e^-4	0.963	UPSTREAM CG42564 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	2200055	3R_2200055_DEL [dm3] 3R_6374333_DEL [dm6]	ATCAATATAATGTTT...	A	5.524e^-4	0.963	UPSTREAM CG42564 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	2200088	3R_2200088_SNP [dm3] 3R_6374366_SNP [dm6]	C	A	5.524e^-4	0.963	UPSTREAM CG42564 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	24011265	3R_24011265_SNP [dm3] 3R_28185543_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG34354	TF binding site mE1_TFBS_sbb
3R	3146127	3R_3146127_SNP [dm3] 3R_7320405_SNP [dm6]	G	T	5.524e^-4	0.963	INTERGENIC
3R	3657952	3R_3657952_SNP [dm3] 3R_7832230_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG34384
3R	7888869	3R_7888869_SNP [dm3] 3R_12063147_SNP [dm6]	A	G	5.524e^-4	0.963	UPSTREAM CG14740 INTERGENIC
3R	7890724	3R_7890724_SNP [dm3] 3R_12065002_SNP [dm6]	T	C	5.524e^-4	0.963	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7891565	3R_7891565_SNP [dm3] 3R_12065843_SNP [dm6]	G	A	5.524e^-4	0.963	INTERGENIC
3R	7891630	3R_7891630_DEL [dm3] 3R_12065908_DEL [dm6]	TCAGT	T	5.524e^-4	0.963	INTERGENIC
3R	7891960	3R_7891960_SNP [dm3] 3R_12066238_SNP [dm6]	G	T	5.524e^-4	0.963	INTERGENIC
3R	7895155	3R_7895155_SNP [dm3] 3R_12069433_SNP [dm6]	G	T	5.524e^-4	0.963	UTR_3_PRIME CG14741
3R	7902066	3R_7902066_SNP [dm3] 3R_12076344_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON CG14741	TF binding site mE1_TFBS_cad
3R	7917380	3R_7917380_SNP [dm3] 3R_12091658_SNP [dm6]	A	G	5.524e^-4	0.963	INTERGENIC
X	10200768	X_10200768_SNP [dm3] X_10306735_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON alpha-Man-I
X	10201084	X_10201084_SNP [dm3] X_10307051_SNP [dm6]	G	T	5.524e^-4	0.963	INTRON alpha-Man-I
X	10201145	X_10201145_SNP [dm3] X_10307112_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON alpha-Man-I
X	10202232	X_10202232_SNP [dm3] X_10308199_SNP [dm6]	A	G	5.524e^-4	0.963	SYNONYMOUS_CODING alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run
X	10412076	X_10412076_SNP [dm3] X_10518043_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON spri	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	10412109	X_10412109_SNP [dm3] X_10518076_SNP [dm6]	A	T	5.524e^-4	0.963	INTRON spri	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	11754174	X_11754174_SNP [dm3] X_11860141_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11754200	X_11754200_SNP [dm3] X_11860167_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11754215	X_11754215_SNP [dm3] X_11860182_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON ATP7	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11754302	X_11754302_SNP [dm3] X_11860269_SNP [dm6]	C	A	5.524e^-4	0.963	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
X	11754371	X_11754371_SNP [dm3] X_11860338_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON ATP7	TF binding site BDTNP1_TFBS_twi
X	13473264	X_13473264_SNP [dm3] X_13579231_SNP [dm6]	G	T	5.524e^-4	0.963	INTRON Tango13
X	13544884	X_13544884_INS [dm3] X_13650851_INS [dm6]	A	AT	5.524e^-4	0.963	INTRON NFAT	TF binding site mE1_TFBS_HSA
X	14060788	X_14060788_SNP [dm3] X_14166755_SNP [dm6]	T	G	5.524e^-4	0.963	INTERGENIC
X	15721707	X_15721707_SNP [dm3] X_15827674_SNP [dm6]	A	T	5.524e^-4	0.963	UTR_3_PRIME sd DOWNSTREAM Chc
X	18994749	X_18994749_SNP [dm3] X_19100716_SNP [dm6]	G	A	5.524e^-4	0.963	INTERGENIC
X	19267345	X_19267345_INS [dm3] X_19373312_INS [dm6]	A	CATCCATT	5.524e^-4	0.963	INTRON kek5
X	20968200	X_20968200_SNP [dm3] X_21097173_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON stg1 & 2 others	transposable element FlyBase
X	21007586	X_21007586_SNP [dm3] X_21136559_SNP [dm6]	G	C	5.524e^-4	0.963	SYNONYMOUS_CODING CG34120
X	21007717	X_21007717_SNP [dm3] X_21136690_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG34120
X	21007733	X_21007733_SNP [dm3] X_21136706_SNP [dm6]	T	A	5.524e^-4	0.963	INTRON CG34120
X	21007752	X_21007752_SNP [dm3] X_21136725_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON CG34120
X	21007766	X_21007766_SNP [dm3] X_21136739_SNP [dm6]	A	G	5.524e^-4	0.963	INTRON CG34120
X	21007784	X_21007784_SNP [dm3] X_21136757_SNP [dm6]	T	C	5.524e^-4	0.963	INTRON CG34120
X	21007794	X_21007794_INS [dm3] X_21136767_INS [dm6]	C	CC	5.524e^-4	0.963	INTRON CG34120
X	21007800	X_21007800_SNP [dm3] X_21136773_SNP [dm6]	C	T	5.524e^-4	0.963	INTRON CG34120
X	21007803	X_21007803_SNP [dm3] X_21136776_SNP [dm6]	A	C	5.524e^-4	0.963	INTRON CG34120
X	21007843	X_21007843_SNP [dm3] X_21136816_SNP [dm6]	C	G	5.524e^-4	0.963	INTRON CG34120
X	21203737	X_21203737_SNP [dm3] X_21332710_SNP [dm6]	G	T	5.524e^-4	0.963	DOWNSTREAM tty INTRON tty
X	6492996	X_6492996_SNP [dm3] X_6598963_SNP [dm6]	G	T	5.524e^-4	0.963	SPLICE_SITE_REGION APC7 INTRON APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6492997	X_6492997_SNP [dm3] X_6598964_SNP [dm6]	G	C	5.524e^-4	0.963	INTRON APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6493000	X_6493000_DEL [dm3] X_6598967_DEL [dm6]	GG	G	5.524e^-4	0.963	INTRON APC7	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.085e^-1)
Null hypothesis is not rejected (p>0.05).
Interpretation: NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_Mo	0.01725

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.0403	0.0812
In_3R_Mo	5.5416	0.0626

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1572 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	12383392	3R_12383392_SNP [dm3] 3R_16557670_SNP [dm6]	T	C	1.441e^-6	0.821	INTRON CG42342
3R	11905311	3R_11905311_SNP [dm3] 3R_16079589_SNP [dm6]	A	T	1.893e^-6	0.821	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
3L	7013659	3L_7013659_SNP [dm3] 3L_7020559_SNP [dm6]	T	G	2.100e^-6	0.821	INTRON Mp
2L	15047304	2L_15047304_SNP [dm3] 2L_15047304_SNP [dm6]	C	T	4.640e^-6	0.821	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3L	9516057	3L_9516057_SNP [dm3] 3L_9522957_SNP [dm6]	C	A	5.188e^-6	0.821	INTRON CG33700
2L	14915565	2L_14915565_SNP [dm3] 2L_14915565_SNP [dm6]	A	G	7.333e^-6	0.821	INTRON CG42313
3L	9516002	3L_9516002_SNP [dm3] 3L_9522902_SNP [dm6]	T	G	8.035e^-6	0.821	INTRON CG33700
3L	9515897	3L_9515897_SNP [dm3] 3L_9522797_SNP [dm6]	A	T	8.338e^-6	0.821	INTRON CG33700
2L	14146807	2L_14146807_SNP [dm3] 2L_14146807_SNP [dm6]	G	A	8.520e^-6	0.821	INTRON CG17341
3R	23150981	3R_23150981_SNP [dm3] 3R_27325259_SNP [dm6]	T	C	1.046e^-5	0.821	INTERGENIC
3L	7013663	3L_7013663_SNP [dm3] 3L_7020563_SNP [dm6]	A	T	1.141e^-5	0.821	INTRON Mp
3L	7013665	3L_7013665_SNP [dm3] 3L_7020565_SNP [dm6]	A	G	1.141e^-5	0.821	INTRON Mp
3L	12127414	3L_12127414_SNP [dm3] 3L_12134314_SNP [dm6]	T	A	1.214e^-5	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	1.249e^-5	0.821	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3L	10861731	3L_10861731_SNP [dm3] 3L_10868631_SNP [dm6]	T	A	1.273e^-5	0.821	INTRON tna
2L	15047268	2L_15047268_SNP [dm3] 2L_15047268_SNP [dm6]	C	T	1.345e^-5	0.821	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2R	19887625	2R_19887625_SNP [dm3] 2R_24000102_SNP [dm6]	T	C	1.382e^-5	0.821	INTRON Unc-89	TF binding site mE1_TFBS_chinmo
2L	15047250	2L_15047250_SNP [dm3] 2L_15047250_SNP [dm6]	C	T	1.417e^-5	0.821	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3L	3656618	3L_3656618_SNP [dm3] 3L_3656618_SNP [dm6]	C	T	1.426e^-5	0.821	INTERGENIC
3R	19623507	3R_19623507_SNP [dm3] 3R_23797785_SNP [dm6]	T	C	1.429e^-5	0.821	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12128199	3L_12128199_SNP [dm3] 3L_12135099_SNP [dm6]	C	T	1.606e^-5	0.821	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
3R	23499589	3R_23499589_SNP [dm3] 3R_27673867_SNP [dm6]	C	A	1.838e^-5	0.821	SPLICE_SITE_REGION unc80 INTRON unc80	TF binding site mE1_TFBS_chinmo
3L	10861727	3L_10861727_SNP [dm3] 3L_10868627_SNP [dm6]	G	A	1.875e^-5	0.821	INTRON tna
2L	14146801	2L_14146801_SNP [dm3] 2L_14146801_SNP [dm6]	G	A	1.902e^-5	0.821	INTRON CG17341
3R	15249274	3R_15249274_SNP [dm3] 3R_19423552_SNP [dm6]	T	C	2.188e^-5	0.821	DOWNSTREAM CG3517 INTRON CG31221
2R	8490562	2R_8490562_INS [dm3] 2R_12603057_INS [dm6]	C	CC	2.205e^-5	0.821	INTRON Amph
2R	8279680	2R_8279680_SNP [dm3] 2R_12392175_SNP [dm6]	T	C	2.206e^-5	0.821	UPSTREAM Cpr49Ad INTERGENIC
2R	8523868	2R_8523868_INS [dm3] 2R_12636363_INS [dm6]	A	AAA	2.223e^-5	0.821	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	12705205	3L_12705205_SNP [dm3] 3L_12712105_SNP [dm6]	C	T	2.344e^-5	0.821	INTERGENIC
2L	7962495	2L_7962495_SNP [dm3] 2L_7962495_SNP [dm6]	C	T	2.363e^-5	0.821	INTRON Snoo
3L	12705219	3L_12705219_SNP [dm3] 3L_12712119_SNP [dm6]	G	T	2.412e^-5	0.821	INTERGENIC
2L	1512903	2L_1512903_SNP [dm3] 2L_1512903_SNP [dm6]	G	A	2.419e^-5	0.821	INTERGENIC
2R	20205949	2R_20205949_SNP [dm3] 2R_24318426_SNP [dm6]	T	A	2.429e^-5	0.821	INTERGENIC
2L	13909336	2L_13909336_SNP [dm3] 2L_13909336_SNP [dm6]	A	G	2.485e^-5	0.821	START_GAINED Ance-2 UTR_5_PRIME Ance-2 DOWNSTREAM Ance	TF binding site mE1_TFBS_cad
X	18698581	X_18698581_SNP [dm3] X_18804548_SNP [dm6]	G	A	2.497e^-5	0.821	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	18033332	3R_18033332_SNP [dm3] 3R_22207610_SNP [dm6]	C	T	2.655e^-5	0.821	INTRON SKIP & 1 other
3R	10762064	3R_10762064_SNP [dm3] 3R_14936342_SNP [dm6]	A	G	2.690e^-5	0.821	INTERGENIC
3R	11898155	3R_11898155_SNP [dm3] 3R_16072433_SNP [dm6]	C	T	2.735e^-5	0.821	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1509277	2L_1509277_SNP [dm3] 2L_1509277_SNP [dm6]	C	A	2.884e^-5	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	18447511	3L_18447511_SNP [dm3] 3L_18454411_SNP [dm6]	G	T	2.917e^-5	0.821	INTERGENIC
3L	18411478	3L_18411478_SNP [dm3] 3L_18418378_SNP [dm6]	T	A	2.939e^-5	0.821	INTERGENIC
X	21097663	X_21097663_SNP [dm3] X_21226636_SNP [dm6]	C	T	2.948e^-5	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3L	447616	3L_447616_SNP [dm3] 3L_447616_SNP [dm6]	A	G	2.953e^-5	0.821	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	15299610	3L_15299610_SNP [dm3] 3L_15306510_SNP [dm6]	T	C	3.025e^-5	0.821	SPLICE_SITE_REGION CG7255 INTRON CG7255
2L	13155496	2L_13155496_SNP [dm3] 2L_13155496_SNP [dm6]	C	T	3.165e^-5	0.821	INTERGENIC
2L	5848806	2L_5848806_SNP [dm3] 2L_5848806_SNP [dm6]	G	T	3.205e^-5	0.821	INTRON TrissinR
2R	8326530	2R_8326530_SNP [dm3] 2R_12439025_SNP [dm6]	G	T	3.206e^-5	0.821	INTRON Dyb	TF binding site mE1_TFBS_HSA
3L	12127499	3L_12127499_SNP [dm3] 3L_12134399_SNP [dm6]	G	A	3.301e^-5	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
2L	4995774	2L_4995774_SNP [dm3] 2L_4995774_SNP [dm6]	C	T	3.881e^-5	0.821	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	6860117	X_6860117_SNP [dm3] X_6966084_SNP [dm6]	G	A	3.927e^-5	0.821	UTR_3_PRIME CG14431 INTRON CG32732
3L	447617	3L_447617_SNP [dm3] 3L_447617_SNP [dm6]	A	C	3.952e^-5	0.821	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	908658	2L_908658_DEL [dm3] 2L_908658_DEL [dm6]	TT	T	3.992e^-5	0.821	INTERGENIC
3L	7991681	3L_7991681_SNP [dm3] 3L_7998581_SNP [dm6]	C	T	4.057e^-5	0.821	INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12127519	3L_12127519_SNP [dm3] 3L_12134419_SNP [dm6]	A	G	4.105e^-5	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	10861730	3L_10861730_SNP [dm3] 3L_10868630_SNP [dm6]	C	T	4.153e^-5	0.821	INTRON tna
2L	16162533	2L_16162533_SNP [dm3] 2L_16162533_SNP [dm6]	G	A	4.238e^-5	0.821	INTERGENIC
X	12431552	X_12431552_SNP [dm3] X_12537519_SNP [dm6]	C	T	4.449e^-5	0.821	INTRON CG43921
2L	4282713	2L_4282713_SNP [dm3] 2L_4282713_SNP [dm6]	G	A	4.451e^-5	0.821	UPSTREAM tutl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	3656622	3L_3656622_SNP [dm3] 3L_3656622_SNP [dm6]	T	A	4.539e^-5	0.821	INTERGENIC
3R	11898781	3R_11898781_SNP [dm3] 3R_16073059_SNP [dm6]	G	C	4.588e^-5	0.821	NON_SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13155448	2L_13155448_SNP [dm3] 2L_13155448_SNP [dm6]	T	C	4.594e^-5	0.821	INTERGENIC
2L	6027338	2L_6027338_SNP [dm3] 2L_6027338_SNP [dm6]	C	G	4.782e^-5	0.821	INTRON CG9109
2L	9263148	2L_9263148_SNP [dm3] 2L_9263148_SNP [dm6]	C	A	4.782e^-5	0.821	UPSTREAM CR45262 INTRON Ggamma30A	TF binding site mE1_TFBS_inv
2R	12130555	2R_12130555_SNP [dm3] 2R_16243050_SNP [dm6]	A	G	4.938e^-5	0.821	DOWNSTREAM CngA INTERGENIC
2R	12130559	2R_12130559_SNP [dm3] 2R_16243054_SNP [dm6]	T	C	4.938e^-5	0.821	DOWNSTREAM CngA INTERGENIC
3R	11898927	3R_11898927_SNP [dm3] 3R_16073205_SNP [dm6]	G	C	4.965e^-5	0.821	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	15263090	X_15263090_SNP [dm3] X_15369057_SNP [dm6]	G	T	5.064e^-5	0.821	INTRON acj6
2R	17578086	2R_17578086_SNP [dm3] 2R_21690581_SNP [dm6]	T	A	5.118e^-5	0.821	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	6983777	2R_6983777_SNP [dm3] 2R_11096272_SNP [dm6]	C	T	5.170e^-5	0.821	INTRON luna	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4463689	3L_4463689_SNP [dm3] 3L_4463689_SNP [dm6]	G	A	5.222e^-5	0.821	INTRON CG15024
2R	8522724	2R_8522724_SNP [dm3] 2R_12635219_SNP [dm6]	A	G	5.247e^-5	0.821	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	4995258	2L_4995258_SNP [dm3] 2L_4995258_SNP [dm6]	A	C	5.380e^-5	0.821	INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	6476422	2L_6476422_SNP [dm3] 2L_6476422_SNP [dm6]	G	A	5.393e^-5	0.821	SYNONYMOUS_CODING CG9536 DOWNSTREAM Sec61alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	20852627	2L_20852627_SNP [dm3] 2L_20852627_SNP [dm6]	G	A	5.485e^-5	0.821	UTR_5_PRIME twit	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13921996	2L_13921996_SNP [dm3] 2L_13921996_SNP [dm6]	T	C	5.491e^-5	0.821	SYNONYMOUS_CODING CG16886 INTRON Ance-3	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	11045876	2L_11045876_INS [dm3] 2L_11045876_INS [dm6]	T	TT	5.505e^-5	0.821	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	23150975	3R_23150975_SNP [dm3] 3R_27325253_SNP [dm6]	C	A	5.559e^-5	0.821	INTERGENIC
3L	7997792	3L_7997792_SNP [dm3] 3L_8004692_SNP [dm6]	T	G	5.590e^-5	0.821	INTRON nmo
3L	7997746	3L_7997746_SNP [dm3] 3L_8004646_SNP [dm6]	T	C	5.643e^-5	0.821	INTRON nmo
2R	8291205	2R_8291205_SNP [dm3] 2R_12403700_SNP [dm6]	C	T	5.771e^-5	0.821	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
3R	20662103	3R_20662103_SNP [dm3] 3R_24836381_SNP [dm6]	A	G	5.919e^-5	0.821	UPSTREAM sosie DOWNSTREAM CR45216 INTRON sosie
2L	11813026	2L_11813026_SNP [dm3] 2L_11813026_SNP [dm6]	A	G	5.963e^-5	0.821	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13699280	2L_13699280_SNP [dm3] 2L_13699280_SNP [dm6]	A	T	6.074e^-5	0.821	INTRON CG31814	TF binding site mE1_TFBS_sbb
X	6860130	X_6860130_SNP [dm3] X_6966097_SNP [dm6]	C	T	6.092e^-5	0.821	UTR_3_PRIME CG14431 INTRON CG32732
3L	7073932	3L_7073932_SNP [dm3] 3L_7080832_SNP [dm6]	C	T	6.129e^-5	0.821	INTERGENIC
3L	1180384	3L_1180384_SNP [dm3] 3L_1180384_SNP [dm6]	A	C	6.191e^-5	0.821	INTERGENIC
3R	27144518	3R_27144518_SNP [dm3] 3R_31318796_SNP [dm6]	C	T	6.361e^-5	0.821	INTRON CG34347
X	21097560	X_21097560_SNP [dm3] X_21226533_SNP [dm6]	A	G	6.478e^-5	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097566	X_21097566_SNP [dm3] X_21226539_SNP [dm6]	T	A	6.478e^-5	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097580	X_21097580_SNP [dm3] X_21226553_SNP [dm6]	G	A	6.478e^-5	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097628	X_21097628_SNP [dm3] X_21226601_SNP [dm6]	C	G	6.478e^-5	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14410051	2R_14410051_SNP [dm3] 2R_18522546_SNP [dm6]	T	C	6.515e^-5	0.821	SYNONYMOUS_CODING CG43066	TF binding site mE1_TFBS_chinmo
3R	23286830	3R_23286830_SNP [dm3] 3R_27461108_SNP [dm6]	C	T	6.546e^-5	0.821	INTERGENIC
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	6.584e^-5	0.821	INTRON Lar
2L	4998326	2L_4998326_SNP [dm3] 2L_4998326_SNP [dm6]	A	C	6.604e^-5	0.821	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_h mE1_TFBS_inv mE1_TFBS_Trl
3L	739171	3L_739171_SNP [dm3] 3L_739171_SNP [dm6]	C	T	6.702e^-5	0.821	UTR_5_PRIME hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19888102	2R_19888102_SNP [dm3] 2R_24000579_SNP [dm6]	T	G	6.732e^-5	0.821	INTRON Unc-89	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	17973388	2R_17973388_SNP [dm3] 2R_22085883_SNP [dm6]	C	T	6.872e^-5	0.821	UTR_3_PRIME CG13502 DOWNSTREAM Synj
X	18724660	X_18724660_SNP [dm3] X_18830627_SNP [dm6]	C	G	7.123e^-5	0.821	UTR_5_PRIME CG7101 DOWNSTREAM CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12128223	3L_12128223_SNP [dm3] 3L_12135123_SNP [dm6]	A	G	7.240e^-5	0.821	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	7672544	2R_7672544_SNP [dm3] 2R_11785039_SNP [dm6]	G	C	7.294e^-5	0.821	INTRON ths	TF binding site mE1_TFBS_cad
3R	22974039	3R_22974039_SNP [dm3] 3R_27148317_SNP [dm6]	T	A	7.404e^-5	0.821	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	11813081	2L_11813081_SNP [dm3] 2L_11813081_SNP [dm6]	C	T	7.414e^-5	0.821	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	13156486	2L_13156486_SNP [dm3] 2L_13156486_SNP [dm6]	T	C	7.444e^-5	0.821	INTERGENIC
2L	13156511	2L_13156511_DEL [dm3] 2L_13156511_DEL [dm6]	ATACATTTGTATATATATTA...	A	7.444e^-5	0.821	INTERGENIC
3R	16321353	3R_16321353_SNP [dm3] 3R_20495631_SNP [dm6]	A	C	7.472e^-5	0.821	INTERGENIC
2R	14582999	2R_14582999_SNP [dm3] 2R_18695494_SNP [dm6]	G	T	7.505e^-5	0.821	INTRON Sik3	TF binding site BDTNP1_TFBS_dl
2R	16334111	2R_16334111_SNP [dm3] 2R_20446606_SNP [dm6]	A	C	7.512e^-5	0.821	INTRON CG12484	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	10526521	2L_10526521_SNP [dm3] 2L_10526521_SNP [dm6]	T	A	7.664e^-5	0.821	INTERGENIC
2L	19245354	2L_19245354_SNP [dm3] 2L_19245354_SNP [dm6]	T	C	7.779e^-5	0.821	INTERGENIC
2L	19675350	2L_19675350_SNP [dm3] 2L_19675350_SNP [dm6]	C	T	7.851e^-5	0.821	INTRON Lar
3L	18626712	3L_18626712_SNP [dm3] 3L_18633612_SNP [dm6]	G	A	7.886e^-5	0.821	INTRON MYPT-75D
2L	13909329	2L_13909329_SNP [dm3] 2L_13909329_SNP [dm6]	T	G	7.893e^-5	0.821	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC	TF binding site mE1_TFBS_cad
3L	4463680	3L_4463680_SNP [dm3] 3L_4463680_SNP [dm6]	A	G	7.972e^-5	0.821	INTRON CG15024
2R	17315694	2R_17315694_SNP [dm3] 2R_21428189_SNP [dm6]	C	T	8.047e^-5	0.821	INTRON Sdc
2L	13316724	2L_13316724_SNP [dm3] 2L_13316724_SNP [dm6]	C	T	8.072e^-5	0.821	INTRON CG43778
3R	22975263	3R_22975263_SNP [dm3] 3R_27149541_SNP [dm6]	G	A	8.075e^-5	0.821	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	6826873	2R_6826873_SNP [dm3] 2R_10939368_SNP [dm6]	T	C	8.080e^-5	0.821	UTR_3_PRIME Spn47C DOWNSTREAM Spn47C	TF binding site mE1_TFBS_cad
2L	13342960	2L_13342960_SNP [dm3] 2L_13342960_SNP [dm6]	T	C	8.198e^-5	0.821	INTERGENIC
2R	8516413	2R_8516413_INS [dm3] 2R_12628908_INS [dm6]	A	AA	8.249e^-5	0.821	UTR_3_PRIME muskelin DOWNSTREAM muskelin & 1 other
X	6859801	X_6859801_SNP [dm3] X_6965768_SNP [dm6]	A	G	8.269e^-5	0.821	SYNONYMOUS_CODING CG14431 INTRON CG32732
3L	738587	3L_738587_SNP [dm3] 3L_738587_SNP [dm6]	T	C	8.298e^-5	0.821	SYNONYMOUS_CODING hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	9226450	X_9226450_SNP [dm3] X_9332417_SNP [dm6]	G	A	8.346e^-5	0.821	INTRON CG34449
3L	12127603	3L_12127603_SNP [dm3] 3L_12134503_SNP [dm6]	A	G	8.545e^-5	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	5190724	3L_5190724_SNP [dm3] 3L_5197624_SNP [dm6]	A	T	8.607e^-5	0.821	INTRON shep
2R	8278528	2R_8278528_SNP [dm3] 2R_12391023_SNP [dm6]	G	A	8.628e^-5	0.821	UTR_3_PRIME Cpr49Ad DOWNSTREAM Cpr49Ac
2L	16861904	2L_16861904_SNP [dm3] 2L_16861904_SNP [dm6]	T	C	8.698e^-5	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
2L	16861930	2L_16861930_SNP [dm3] 2L_16861930_SNP [dm6]	C	T	8.698e^-5	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
2L	16861978	2L_16861978_SNP [dm3] 2L_16861978_SNP [dm6]	C	T	8.698e^-5	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16861985	2L_16861985_SNP [dm3] 2L_16861985_SNP [dm6]	G	A	8.698e^-5	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	6859558	X_6859558_SNP [dm3] X_6965525_SNP [dm6]	T	C	9.009e^-5	0.821	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	6129427	2L_6129427_SNP [dm3] 2L_6129427_SNP [dm6]	G	T	9.054e^-5	0.821	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	9.083e^-5	0.821	UTR_3_PRIME CG1986
X	5388992	X_5388992_SNP [dm3] X_5494959_SNP [dm6]	C	T	9.185e^-5	0.821	SYNONYMOUS_CODING frma DOWNSTREAM SPR
2R	8522170	2R_8522170_SNP [dm3] 2R_12634665_SNP [dm6]	A	C	9.380e^-5	0.821	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site mE1_TFBS_sens
X	18698397	X_18698397_SNP [dm3] X_18804364_SNP [dm6]	A	G	9.449e^-5	0.821	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
X	16087686	X_16087686_SNP [dm3] X_16193653_SNP [dm6]	A	G	9.681e^-5	0.821	INTERGENIC
2L	15041244	2L_15041244_SNP [dm3] 2L_15041244_SNP [dm6]	T	A	9.800e^-5	0.821	SYNONYMOUS_CODING Su_H_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2390241	3L_2390241_SNP [dm3] 3L_2390241_SNP [dm6]	T	C	9.982e^-5	0.821	UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186 & 2 others
3R	20551156	3R_20551156_SNP [dm3] 3R_24725434_SNP [dm6]	G	C	9.985e^-5	0.821	INTRON tok
3R	15148541	3R_15148541_SNP [dm3] 3R_19322819_SNP [dm6]	A	G	9.992e^-5	0.821	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	2360468	3L_2360468_SNP [dm3] 3L_2360468_SNP [dm6]	T	C	1.004e^-4	0.821	UPSTREAM CG13801 INTERGENIC
3L	12127543	3L_12127543_SNP [dm3] 3L_12134443_SNP [dm6]	A	T	1.024e^-4	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	12127570	3L_12127570_SNP [dm3] 3L_12134470_SNP [dm6]	C	T	1.024e^-4	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
X	20882705	X_20882705_SNP [dm3] X_21011678_SNP [dm6]	T	G	1.028e^-4	0.821	INTERGENIC
3R	24275403	3R_24275403_SNP [dm3] 3R_28449681_SNP [dm6]	T	A	1.039e^-4	0.821	INTRON beat-VI
X	12431730	X_12431730_SNP [dm3] X_12537697_SNP [dm6]	C	T	1.041e^-4	0.821	INTRON CG43921
X	18640270	X_18640270_SNP [dm3] X_18746237_SNP [dm6]	A	T	1.042e^-4	0.821	DOWNSTREAM CG12609 INTERGENIC
2L	16861973	2L_16861973_INS [dm3] 2L_16861973_INS [dm6]	A	AGGAATCC	1.051e^-4	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19240682	X_19240682_INS [dm3] X_19346649_INS [dm6]	A	AAA	1.064e^-4	0.821	INTRON nAChRalpha7
3R	15148558	3R_15148558_SNP [dm3] 3R_19322836_SNP [dm6]	A	T	1.069e^-4	0.821	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	15217117	3L_15217117_SNP [dm3] 3L_15224017_SNP [dm6]	G	A	1.098e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
2L	6476359	2L_6476359_SNP [dm3] 2L_6476359_SNP [dm6]	G	A	1.103e^-4	0.821	SYNONYMOUS_CODING CG9536 DOWNSTREAM Sec61alpha	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10293963	2L_10293963_DEL [dm3] 2L_10293963_DEL [dm6]	AA	A	1.104e^-4	0.821	INTRON Hand	regulatory region REDfly_CRMs
3L	3774024	3L_3774024_SNP [dm3] 3L_3774024_SNP [dm6]	C	T	1.139e^-4	0.821	INTRON CG32264
2L	6129473	2L_6129473_SNP [dm3] 2L_6129473_SNP [dm6]	G	C	1.164e^-4	0.821	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6129559	2L_6129559_SNP [dm3] 2L_6129559_SNP [dm6]	G	A	1.164e^-4	0.821	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4732950	2L_4732950_SNP [dm3] 2L_4732950_SNP [dm6]	G	A	1.200e^-4	0.821	SYNONYMOUS_CODING CG15631
X	2410129	X_2410129_SNP [dm3] X_2516096_SNP [dm6]	A	G	1.209e^-4	0.821	INTRON trol
X	12757418	X_12757418_SNP [dm3] X_12863385_SNP [dm6]	A	T	1.216e^-4	0.821	INTRON Pde9
2L	13316146	2L_13316146_SNP [dm3] 2L_13316146_SNP [dm6]	T	A	1.229e^-4	0.821	INTRON CG43778
2L	13316148	2L_13316148_SNP [dm3] 2L_13316148_SNP [dm6]	A	G	1.233e^-4	0.821	INTRON CG43778
2L	4486715	2L_4486715_SNP [dm3] 2L_4486715_SNP [dm6]	C	G	1.241e^-4	0.821	SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23953031	3R_23953031_SNP [dm3] 3R_28127309_SNP [dm6]	A	C	1.245e^-4	0.821	INTERGENIC
2R	8527982	2R_8527982_SNP [dm3] 2R_12640477_SNP [dm6]	T	C	1.246e^-4	0.821	UTR_3_PRIME Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
3L	12128391	3L_12128391_SNP [dm3] 3L_12135291_SNP [dm6]	A	G	1.254e^-4	0.821	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12128469	3L_12128469_SNP [dm3] 3L_12135369_SNP [dm6]	G	C	1.254e^-4	0.821	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	5849263	2L_5849263_SNP [dm3] 2L_5849263_SNP [dm6]	A	C	1.256e^-4	0.821	INTRON TrissinR
3R	24278054	3R_24278054_SNP [dm3] 3R_28452332_SNP [dm6]	G	A	1.258e^-4	0.821	INTRON beat-VI	TF binding site mE1_TFBS_chinmo
2R	8279227	2R_8279227_SNP [dm3] 2R_12391722_SNP [dm6]	A	G	1.266e^-4	0.821	UPSTREAM Cpr49Ad INTERGENIC
2L	1513780	2L_1513780_SNP [dm3] 2L_1513780_SNP [dm6]	A	C	1.268e^-4	0.821	INTERGENIC
2L	13909290	2L_13909290_SNP [dm3] 2L_13909290_SNP [dm6]	G	T	1.280e^-4	0.821	UPSTREAM Ance-2 DOWNSTREAM Ance INTERGENIC	TF binding site mE1_TFBS_cad
2L	1510179	2L_1510179_SNP [dm3] 2L_1510179_SNP [dm6]	C	T	1.309e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
X	19879055	X_19879055_SNP [dm3] X_19985022_SNP [dm6]	G	A	1.312e^-4	0.821	INTERGENIC
3R	16320440	3R_16320440_SNP [dm3] 3R_20494718_SNP [dm6]	T	G	1.320e^-4	0.821	INTERGENIC
3R	24936840	3R_24936840_SNP [dm3] 3R_29111118_SNP [dm6]	A	C	1.321e^-4	0.821	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2313500	3L_2313500_SNP [dm3] 3L_2313500_SNP [dm6]	G	C	1.332e^-4	0.821	INTERGENIC
3L	15492775	3L_15492775_SNP [dm3] 3L_15499675_SNP [dm6]	T	C	1.339e^-4	0.821	SYNONYMOUS_CODING CG7275 DOWNSTREAM CG7276	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
X	9226173	X_9226173_SNP [dm3] X_9332140_SNP [dm6]	G	A	1.341e^-4	0.821	INTRON CG34449
X	9226180	X_9226180_DEL [dm3] X_9332147_DEL [dm6]	ATTTTAAA	A	1.341e^-4	0.821	INTRON CG34449
3R	4863276	3R_4863276_SNP [dm3] 3R_9037554_SNP [dm6]	T	A	1.347e^-4	0.821	INTRON neur	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	4913255	3R_4913255_SNP [dm3] 3R_9087533_SNP [dm6]	A	G	1.354e^-4	0.821	INTRON pum
3L	13647607	3L_13647607_SNP [dm3] 3L_13654507_SNP [dm6]	T	C	1.354e^-4	0.821	INTRON bru-3
2R	13000861	2R_13000861_SNP [dm3] 2R_17113356_SNP [dm6]	G	C	1.362e^-4	0.821	SYNONYMOUS_CODING CG15611
X	18725796	X_18725796_SNP [dm3] X_18831763_SNP [dm6]	T	C	1.379e^-4	0.821	NON_SYNONYMOUS_CODING CG7101 UPSTREAM Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7775941	3L_7775941_SNP [dm3] 3L_7782841_SNP [dm6]	G	C	1.380e^-4	0.821	INTRON CG32369
3L	12127161	3L_12127161_SNP [dm3] 3L_12134061_SNP [dm6]	T	G	1.384e^-4	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2R	13000855	2R_13000855_SNP [dm3] 2R_17113350_SNP [dm6]	T	C	1.387e^-4	0.821	SYNONYMOUS_CODING CG15611
3R	9267894	3R_9267894_SNP [dm3] 3R_13442172_SNP [dm6]	G	A	1.409e^-4	0.821	DOWNSTREAM CR45679 INTERGENIC
3L	15535632	3L_15535632_SNP [dm3] 3L_15542532_SNP [dm6]	T	C	1.424e^-4	0.821	INTRON CrebA
X	12422898	X_12422898_SNP [dm3] X_12528865_SNP [dm6]	A	T	1.431e^-4	0.821	INTRON CG43921
3L	1180304	3L_1180304_DEL [dm3] 3L_1180304_DEL [dm6]	CTGTCAAC	C	1.435e^-4	0.821	INTERGENIC
3L	2360402	3L_2360402_SNP [dm3] 3L_2360402_SNP [dm6]	A	C	1.436e^-4	0.821	UPSTREAM CG13801 INTERGENIC
3L	7291341	3L_7291341_DEL [dm3] 3L_7298241_DEL [dm6]	GG	G	1.437e^-4	0.821	INTRON unc-13-4A
2L	13316733	2L_13316733_SNP [dm3] 2L_13316733_SNP [dm6]	A	G	1.446e^-4	0.821	INTRON CG43778
2L	15054879	2L_15054879_SNP [dm3] 2L_15054879_SNP [dm6]	T	A	1.463e^-4	0.821	INTRON ck	regulatory region REDfly_CRMs
2L	13158573	2L_13158573_SNP [dm3] 2L_13158573_SNP [dm6]	A	G	1.467e^-4	0.821	UPSTREAM Pk34A INTERGENIC	TF binding site mE1_TFBS_Kr
2L	4997281	2L_4997281_SNP [dm3] 2L_4997281_SNP [dm6]	A	G	1.490e^-4	0.821	UTR_5_PRIME Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
2L	4282714	2L_4282714_SNP [dm3] 2L_4282714_SNP [dm6]	G	A	1.497e^-4	0.821	UPSTREAM tutl INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	15288537	3L_15288537_SNP [dm3] 3L_15295437_SNP [dm6]	T	C	1.497e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17714292	3R_17714292_SNP [dm3] 3R_21888570_SNP [dm6]	A	G	1.506e^-4	0.821	UPSTREAM CR43844 INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17714296	3R_17714296_SNP [dm3] 3R_21888574_SNP [dm6]	A	C	1.506e^-4	0.821	UPSTREAM CR43844 INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17714400	3R_17714400_SNP [dm3] 3R_21888678_SNP [dm6]	T	A	1.506e^-4	0.821	UPSTREAM CR43844 INTRON CG6678
2L	4997670	2L_4997670_SNP [dm3] 2L_4997670_SNP [dm6]	G	T	1.535e^-4	0.821	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3L	12127692	3L_12127692_SNP [dm3] 3L_12134592_SNP [dm6]	C	T	1.541e^-4	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	12127694	3L_12127694_SNP [dm3] 3L_12134594_SNP [dm6]	G	A	1.541e^-4	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	12127812	3L_12127812_SNP [dm3] 3L_12134712_SNP [dm6]	G	T	1.541e^-4	0.821	DOWNSTREAM CG11534 INTRON CG5645	TF binding site mE1_TFBS_cad
3L	12127813	3L_12127813_SNP [dm3] 3L_12134713_SNP [dm6]	T	A	1.541e^-4	0.821	DOWNSTREAM CG11534 INTRON CG5645	TF binding site mE1_TFBS_cad
2L	2306156	2L_2306156_SNP [dm3] 2L_2306156_SNP [dm6]	C	T	1.542e^-4	0.821	INTERGENIC
3L	12127875	3L_12127875_SNP [dm3] 3L_12134775_SNP [dm6]	G	A	1.543e^-4	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
2L	11812912	2L_11812912_SNP [dm3] 2L_11812912_SNP [dm6]	C	T	1.549e^-4	0.821	INTRON CycY
2L	11813052	2L_11813052_SNP [dm3] 2L_11813052_SNP [dm6]	A	T	1.549e^-4	0.821	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	11813098	2L_11813098_SNP [dm3] 2L_11813098_SNP [dm6]	G	T	1.549e^-4	0.821	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	7249512	2L_7249512_SNP [dm3] 2L_7249512_SNP [dm6]	A	G	1.558e^-4	0.821	UPSTREAM Ndae1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	1661919	2L_1661919_DEL [dm3] 2L_1661919_DEL [dm6]	GGG	G	1.564e^-4	0.821	INTRON chinmo
3R	19417830	3R_19417830_SNP [dm3] 3R_23592108_SNP [dm6]	G	T	1.570e^-4	0.821	SYNONYMOUS_CODING CG33337
X	19634900	X_19634900_SNP [dm3] X_19740867_SNP [dm6]	G	T	1.586e^-4	0.821	UTR_3_PRIME CoVIb DOWNSTREAM CG18809 & 1 other
2L	14915559	2L_14915559_SNP [dm3] 2L_14915559_SNP [dm6]	T	A	1.593e^-4	0.821	INTRON CG42313
2L	19682216	2L_19682216_SNP [dm3] 2L_19682216_SNP [dm6]	C	T	1.608e^-4	0.821	INTRON Lar
2R	11590495	2R_11590495_SNP [dm3] 2R_15702990_SNP [dm6]	T	G	1.608e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3219761	2L_3219761_SNP [dm3] 2L_3219761_SNP [dm6]	T	C	1.610e^-4	0.821	INTERGENIC
3L	7013780	3L_7013780_SNP [dm3] 3L_7020680_SNP [dm6]	T	A	1.615e^-4	0.821	INTRON Mp
3L	12874338	3L_12874338_SNP [dm3] 3L_12881238_SNP [dm6]	C	T	1.617e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_inv
3R	24285277	3R_24285277_SNP [dm3] 3R_28459555_SNP [dm6]	A	T	1.622e^-4	0.821	INTRON beat-VI
3R	2789715	3R_2789715_SNP [dm3] 3R_6963993_SNP [dm6]	G	A	1.624e^-4	0.821	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	2834415	X_2834415_SNP [dm3] X_2940382_SNP [dm6]	A	G	1.645e^-4	0.821	SYNONYMOUS_CODING CG14420 INTRON kirre
3L	15299604	3L_15299604_SNP [dm3] 3L_15306504_SNP [dm6]	A	G	1.651e^-4	0.821	INTRON CG7255
3L	13624855	3L_13624855_SNP [dm3] 3L_13631755_SNP [dm6]	C	T	1.658e^-4	0.821	INTRON bru-3
3R	11905632	3R_11905632_SNP [dm3] 3R_16079910_SNP [dm6]	C	G	1.661e^-4	0.821	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18118780	3L_18118780_SNP [dm3] 3L_18125680_SNP [dm6]	T	A	1.688e^-4	0.821	INTERGENIC
3L	10688178	3L_10688178_SNP [dm3] 3L_10695078_SNP [dm6]	T	C	1.690e^-4	0.821	SYNONYMOUS_CODING NijA UPSTREAM CG6463
X	20873918	X_20873918_SNP [dm3] X_21002891_SNP [dm6]	G	A	1.693e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3L	18447805	3L_18447805_SNP [dm3] 3L_18454705_SNP [dm6]	G	A	1.706e^-4	0.821	INTERGENIC
2L	13920500	2L_13920500_SNP [dm3] 2L_13920500_SNP [dm6]	A	G	1.713e^-4	0.821	DOWNSTREAM CG16886 INTRON Ance-3	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11812918	2L_11812918_SNP [dm3] 2L_11812918_SNP [dm6]	A	G	1.720e^-4	0.821	INTRON CycY
X	4525180	X_4525180_SNP [dm3] X_4631147_SNP [dm6]	T	C	1.720e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2L	13928677	2L_13928677_SNP [dm3] 2L_13928677_SNP [dm6]	T	A	1.724e^-4	0.821	INTRON Ance-3
2L	17073426	2L_17073426_DEL [dm3] 2L_17073426_DEL [dm6]	GGG	G	1.727e^-4	0.821	INTERGENIC
3R	22173577	3R_22173577_SNP [dm3] 3R_26347855_SNP [dm6]	G	T	1.729e^-4	0.821	INTRON CG33970
3L	739168	3L_739168_SNP [dm3] 3L_739168_SNP [dm6]	T	G	1.731e^-4	0.821	UTR_5_PRIME hng3 INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	9226164	X_9226164_SNP [dm3] X_9332131_SNP [dm6]	A	T	1.737e^-4	0.821	INTRON CG34449
3L	9320478	3L_9320478_INS [dm3] 3L_9327378_INS [dm6]	A	ACACTTGGTCAGAGCTTTAA...	1.740e^-4	0.821	INTERGENIC
X	12757140	X_12757140_SNP [dm3] X_12863107_SNP [dm6]	G	A	1.747e^-4	0.821	INTRON Pde9
X	21444922	X_21444922_SNP [dm3] X_21573895_SNP [dm6]	C	A	1.752e^-4	0.821	INTERGENIC
2R	15291583	2R_15291583_SNP [dm3] 2R_19404078_SNP [dm6]	C	G	1.759e^-4	0.821	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12757806	X_12757806_SNP [dm3] X_12863773_SNP [dm6]	G	T	1.766e^-4	0.821	INTRON Pde9
3R	16922652	3R_16922652_SNP [dm3] 3R_21096930_SNP [dm6]	G	C	1.767e^-4	0.821	INTRON RhoGAP93B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	3292347	2L_3292347_SNP [dm3] 2L_3292347_SNP [dm6]	G	A	1.773e^-4	0.821	UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	5013501	3L_5013501_SNP [dm3] 3L_5013501_SNP [dm6]	T	G	1.780e^-4	0.821	INTRON Con
2L	15047265	2L_15047265_SNP [dm3] 2L_15047265_SNP [dm6]	G	T	1.790e^-4	0.821	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
2L	15047403	2L_15047403_SNP [dm3] 2L_15047403_SNP [dm6]	G	A	1.791e^-4	0.821	SYNONYMOUS_CODING ck
3R	26875687	3R_26875687_SNP [dm3] 3R_31049965_SNP [dm6]	C	T	1.800e^-4	0.821	UTR_5_PRIME Aph-4 INTRON Aph-4
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	1.806e^-4	0.821	INTRON sick
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	1.806e^-4	0.821	INTRON sick
2R	18799744	2R_18799744_SNP [dm3] 2R_22912221_SNP [dm6]	G	T	1.809e^-4	0.821	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA
3R	14535946	3R_14535946_SNP [dm3] 3R_18710224_SNP [dm6]	T	C	1.831e^-4	0.821	INTRON VAChT & 1 other
3L	16138276	3L_16138276_DEL [dm3] 3L_16145176_DEL [dm6]	CAATATTTCCCTTC...	C	1.834e^-4	0.821	INTRON CG5151
3L	16139408	3L_16139408_SNP [dm3] 3L_16146308_SNP [dm6]	C	T	1.834e^-4	0.821	INTRON CG5151	TF binding site mE1_TFBS_Trl
3L	16139619	3L_16139619_SNP [dm3] 3L_16146519_SNP [dm6]	A	C	1.834e^-4	0.821	INTRON CG5151
3R	11238297	3R_11238297_SNP [dm3] 3R_15412575_SNP [dm6]	G	A	1.848e^-4	0.821	SPLICE_SITE_REGION Atx2 INTRON Atx2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	12705243	3L_12705243_SNP [dm3] 3L_12712143_SNP [dm6]	A	T	1.856e^-4	0.821	INTERGENIC
2L	18138252	2L_18138252_SNP [dm3] 2L_18138252_SNP [dm6]	C	T	1.873e^-4	0.821	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18138283	2L_18138283_DEL [dm3] 2L_18138283_DEL [dm6]	TACAAACTAA	T	1.873e^-4	0.821	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2L	18138293	2L_18138293_INS [dm3] 2L_18138293_INS [dm6]	T	TG	1.873e^-4	0.821	UPSTREAM kel DOWNSTREAM Socs36E INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	10895304	3R_10895304_SNP [dm3] 3R_15069582_SNP [dm6]	G	A	1.879e^-4	0.821	INTRON dpr9
3L	11744073	3L_11744073_SNP [dm3] 3L_11750973_SNP [dm6]	T	G	1.889e^-4	0.821	UPSTREAM Gr68a INTRON CG6024
3R	24936843	3R_24936843_SNP [dm3] 3R_29111121_SNP [dm6]	T	C	1.894e^-4	0.821	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	7151509	2R_7151509_SNP [dm3] 2R_11264004_SNP [dm6]	A	G	1.910e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
2R	9926031	2R_9926031_SNP [dm3] 2R_14038526_SNP [dm6]	T	A	1.912e^-4	0.821	INTRON mam
2L	21722386	2L_21722386_SNP [dm3] 2L_21722386_SNP [dm6]	T	C	1.929e^-4	0.821	INTRON CG31619
2L	1510150	2L_1510150_DEL [dm3] 2L_1510150_DEL [dm6]	ATCTGGATGCCAGAACC...	A	1.939e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20560402	3R_20560402_SNP [dm3] 3R_24734680_SNP [dm6]	A	G	1.942e^-4	0.821	INTRON tok
3R	17714306	3R_17714306_SNP [dm3] 3R_21888584_SNP [dm6]	C	T	1.944e^-4	0.821	UPSTREAM CR43844 INTRON CG6678	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25535580	3R_25535580_SNP [dm3] 3R_29709858_SNP [dm6]	G	T	1.950e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25677503	3R_25677503_SNP [dm3] 3R_29851781_SNP [dm6]	G	A	1.964e^-4	0.821	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9224519	3R_9224519_SNP [dm3] 3R_13398797_SNP [dm6]	G	T	1.985e^-4	0.821	NON_SYNONYMOUS_CODING CG9796 DOWNSTREAM CG14377
X	21455245	X_21455245_SNP [dm3] X_21584218_SNP [dm6]	A	G	1.985e^-4	0.821	EXON CR44711
3L	12189771	3L_12189771_SNP [dm3] 3L_12196671_SNP [dm6]	C	T	1.993e^-4	0.821	UPSTREAM CR45746 INTERGENIC
3L	16138055	3L_16138055_DEL [dm3] 3L_16144955_DEL [dm6]	TT	T	1.995e^-4	0.821	UPSTREAM CG32152 & 1 other INTRON CG5151
2R	19650088	2R_19650088_INS [dm3] 2R_23762565_INS [dm6]	C	CGC	1.995e^-4	0.821	INTRON CG9850
2R	17578088	2R_17578088_SNP [dm3] 2R_21690583_SNP [dm6]	G	A	1.997e^-4	0.821	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	8647607	2L_8647607_SNP [dm3] 2L_8647607_SNP [dm6]	C	T	2.010e^-4	0.821	INTRON Sema-1a
2L	4996137	2L_4996137_DEL [dm3] 2L_4996137_DEL [dm6]	CCTCAATAAAAATGGTA...	C	2.028e^-4	0.821	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	21444924	X_21444924_SNP [dm3] X_21573897_SNP [dm6]	A	G	2.035e^-4	0.821	INTERGENIC
X	21444932	X_21444932_SNP [dm3] X_21573905_SNP [dm6]	C	T	2.035e^-4	0.821	INTERGENIC
X	21444938	X_21444938_SNP [dm3] X_21573911_SNP [dm6]	T	A	2.035e^-4	0.821	INTERGENIC
2L	19281417	2L_19281417_SNP [dm3] 2L_19281417_SNP [dm6]	C	G	2.042e^-4	0.821	INTERGENIC
X	7583331	X_7583331_SNP [dm3] X_7689298_SNP [dm6]	G	A	2.044e^-4	0.821	NON_SYNONYMOUS_CODING CHES-1-like	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	14004227	2L_14004227_SNP [dm3] 2L_14004227_SNP [dm6]	T	C	2.046e^-4	0.821	INTERGENIC
3L	12894388	3L_12894388_SNP [dm3] 3L_12901288_SNP [dm6]	T	C	2.062e^-4	0.821	UTR_3_PRIME CG12520
3R	22771830	3R_22771830_SNP [dm3] 3R_26946108_SNP [dm6]	G	C	2.068e^-4	0.821	NON_SYNONYMOUS_CODING CG14252 DOWNSTREAM sda	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10722441	2R_10722441_SNP [dm3] 2R_14834936_SNP [dm6]	C	T	2.109e^-4	0.821	DOWNSTREAM CG10205 INTERGENIC
2R	8546659	2R_8546659_SNP [dm3] 2R_12659154_SNP [dm6]	A	G	2.109e^-4	0.821	SYNONYMOUS_CODING CG8646 DOWNSTREAM nemy	TF binding site mE1_TFBS_cad
2L	11813076	2L_11813076_SNP [dm3] 2L_11813076_SNP [dm6]	C	T	2.133e^-4	0.821	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	22517358	3R_22517358_SNP [dm3] 3R_26691636_SNP [dm6]	T	C	2.140e^-4	0.821	DOWNSTREAM TwdlQ INTERGENIC
3R	16057450	3R_16057450_SNP [dm3] 3R_20231728_SNP [dm6]	T	C	2.152e^-4	0.821	INTRON Nlg4
2L	1507406	2L_1507406_SNP [dm3] 2L_1507406_SNP [dm6]	C	T	2.175e^-4	0.821	INTERGENIC
3R	16321408	3R_16321408_SNP [dm3] 3R_20495686_SNP [dm6]	A	T	2.181e^-4	0.821	INTERGENIC
X	18725855	X_18725855_SNP [dm3] X_18831822_SNP [dm6]	C	T	2.193e^-4	0.821	UTR_3_PRIME CG7101 UPSTREAM Pvf1	TF binding site mE1_TFBS_cad
3L	18110534	3L_18110534_SNP [dm3] 3L_18117434_SNP [dm6]	T	G	2.196e^-4	0.821	UTR_3_PRIME CG32195 INTRON CG7341
3R	16091275	3R_16091275_SNP [dm3] 3R_20265553_SNP [dm6]	G	T	2.197e^-4	0.821	INTRON cic
X	5388986	X_5388986_SNP [dm3] X_5494953_SNP [dm6]	T	C	2.202e^-4	0.821	SYNONYMOUS_CODING frma DOWNSTREAM SPR
3R	11898728	3R_11898728_SNP [dm3] 3R_16073006_SNP [dm6]	A	G	2.214e^-4	0.821	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1190743	3L_1190743_SNP [dm3] 3L_1190743_SNP [dm6]	C	T	2.218e^-4	0.821	UTR_3_PRIME Trh DOWNSTREAM CG13912	TF binding site mE1_TFBS_cad
X	6859744	X_6859744_SNP [dm3] X_6965711_SNP [dm6]	G	A	2.242e^-4	0.821	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	6859756	X_6859756_SNP [dm3] X_6965723_SNP [dm6]	A	C	2.242e^-4	0.821	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	14705981	3R_14705981_SNP [dm3] 3R_18880259_SNP [dm6]	A	G	2.243e^-4	0.821	INTERGENIC
3R	16321397	3R_16321397_SNP [dm3] 3R_20495675_SNP [dm6]	G	A	2.250e^-4	0.821	INTERGENIC
2R	6638820	2R_6638820_SNP [dm3] 2R_10751315_SNP [dm6]	A	G	2.269e^-4	0.821	INTRON CG33144
3R	16117444	3R_16117444_SNP [dm3] 3R_20291722_SNP [dm6]	T	C	2.289e^-4	0.821	INTRON cic	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	1824832	3L_1824832_SNP [dm3] 3L_1824832_SNP [dm6]	C	T	2.297e^-4	0.821	INTRON Cpr62Ba
2L	3292171	2L_3292171_SNP [dm3] 2L_3292171_SNP [dm6]	T	C	2.297e^-4	0.821	SPLICE_SITE_REGION CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	15047457	2L_15047457_SNP [dm3] 2L_15047457_SNP [dm6]	C	T	2.299e^-4	0.821	SYNONYMOUS_CODING ck
3L	18110549	3L_18110549_SNP [dm3] 3L_18117449_SNP [dm6]	C	A	2.306e^-4	0.821	UTR_3_PRIME CG32195 INTRON CG7341
3R	16091277	3R_16091277_SNP [dm3] 3R_20265555_SNP [dm6]	T	A	2.318e^-4	0.821	INTRON cic
3R	16091284	3R_16091284_SNP [dm3] 3R_20265562_SNP [dm6]	G	T	2.318e^-4	0.821	INTRON cic
3R	16091314	3R_16091314_SNP [dm3] 3R_20265592_SNP [dm6]	A	T	2.318e^-4	0.821	INTRON cic
X	11116104	X_11116104_SNP [dm3] X_11222071_SNP [dm6]	G	T	2.332e^-4	0.821	UTR_3_PRIME CG44422 DOWNSTREAM CG44422
2R	8522163	2R_8522163_SNP [dm3] 2R_12634658_SNP [dm6]	G	A	2.337e^-4	0.821	SYNONYMOUS_CODING CG33671 UTR_3_PRIME CG33672 DOWNSTREAM spt4	TF binding site mE1_TFBS_sens
2R	17578008	2R_17578008_SNP [dm3] 2R_21690503_SNP [dm6]	C	T	2.337e^-4	0.821	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17578015	2R_17578015_SNP [dm3] 2R_21690510_SNP [dm6]	A	G	2.337e^-4	0.821	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	3292309	2L_3292309_SNP [dm3] 2L_3292309_SNP [dm6]	T	G	2.341e^-4	0.821	SPLICE_SITE_REGION CG9664 UTR_3_PRIME CG9664 INTRON CG9664	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22606134	3R_22606134_SNP [dm3] 3R_26780412_SNP [dm6]	T	C	2.342e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	19924962	X_19924962_SNP [dm3] X_20030929_SNP [dm6]	C	T	2.352e^-4	0.821	INTRON Dop2R
2L	1514093	2L_1514093_SNP [dm3] 2L_1514093_SNP [dm6]	T	A	2.355e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1514095	2L_1514095_SNP [dm3] 2L_1514095_SNP [dm6]	T	C	2.355e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	8206373	3L_8206373_SNP [dm3] 3L_8213273_SNP [dm6]	C	T	2.371e^-4	0.821	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
3L	10906968	3L_10906968_SNP [dm3] 3L_10913868_SNP [dm6]	G	T	2.372e^-4	0.821	INTERGENIC
3R	16321311	3R_16321311_SNP [dm3] 3R_20495589_SNP [dm6]	C	G	2.381e^-4	0.821	INTERGENIC
2L	3219625	2L_3219625_SNP [dm3] 2L_3219625_SNP [dm6]	G	T	2.384e^-4	0.821	INTERGENIC
2L	1982532	2L_1982532_SNP [dm3] 2L_1982532_SNP [dm6]	C	G	2.413e^-4	0.821	DOWNSTREAM CG15362 INTRON CG7289	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
2L	12157460	2L_12157460_SNP [dm3] 2L_12157460_SNP [dm6]	C	G	2.414e^-4	0.821	INTRON CG31760
2R	8911929	2R_8911929_SNP [dm3] 2R_13024424_SNP [dm6]	C	A	2.422e^-4	0.821	INTERGENIC
2R	8291148	2R_8291148_SNP [dm3] 2R_12403643_SNP [dm6]	C	T	2.425e^-4	0.821	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2R	8291177	2R_8291177_SNP [dm3] 2R_12403672_SNP [dm6]	T	C	2.425e^-4	0.821	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
2L	13208837	2L_13208837_SNP [dm3] 2L_13208837_SNP [dm6]	A	T	2.435e^-4	0.821	INTRON Pect
3L	7775807	3L_7775807_SNP [dm3] 3L_7782707_SNP [dm6]	T	A	2.447e^-4	0.821	INTRON CG32369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11698564	2L_11698564_SNP [dm3] 2L_11698564_SNP [dm6]	G	T	2.476e^-4	0.821	INTERGENIC
X	4525479	X_4525479_SNP [dm3] X_4631446_SNP [dm6]	A	G	2.480e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184
2L	11813303	2L_11813303_DEL [dm3] 2L_11813303_DEL [dm6]	TCT	T	2.484e^-4	0.821	DOWNSTREAM Pde1c INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12128368	3L_12128368_SNP [dm3] 3L_12135268_SNP [dm6]	C	T	2.494e^-4	0.821	NON_SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8524195	2R_8524195_SNP [dm3] 2R_12636690_SNP [dm6]	A	T	2.504e^-4	0.821	START_GAINED Iswi UTR_5_PRIME Iswi UPSTREAM CG33671 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	22964000	3R_22964000_SNP [dm3] 3R_27138278_SNP [dm6]	G	A	2.507e^-4	0.821	INTRON CG6051
3L	15299655	3L_15299655_SNP [dm3] 3L_15306555_SNP [dm6]	A	G	2.510e^-4	0.821	UTR_5_PRIME CG7255
X	20299691	X_20299691_SNP [dm3] X_20428664_SNP [dm6]	T	C	2.516e^-4	0.821	SYNONYMOUS_CODING CG11710	TF binding site mE1_TFBS_inv
3L	10861520	3L_10861520_DEL [dm3] 3L_10868420_DEL [dm6]	TTG	T	2.517e^-4	0.821	INTRON tna
3L	3419262	3L_3419262_SNP [dm3] 3L_3419262_SNP [dm6]	C	T	2.531e^-4	0.821	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	19720500	2L_19720500_SNP [dm3] 2L_19720500_SNP [dm6]	G	A	2.536e^-4	0.821	INTRON Lar
3L	1907530	3L_1907530_SNP [dm3] 3L_1907530_SNP [dm6]	G	C	2.547e^-4	0.821	INTRON CG1887
3R	6006243	3R_6006243_SNP [dm3] 3R_10180521_SNP [dm6]	A	G	2.556e^-4	0.821	INTRON CG12814
3R	23147790	3R_23147790_SNP [dm3] 3R_27322068_SNP [dm6]	T	A	2.562e^-4	0.821	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12127278	3L_12127278_SNP [dm3] 3L_12134178_SNP [dm6]	A	G	2.563e^-4	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2L	13699205	2L_13699205_SNP [dm3] 2L_13699205_SNP [dm6]	C	T	2.575e^-4	0.821	INTRON CG31814	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	7013720	3L_7013720_SNP [dm3] 3L_7020620_SNP [dm6]	T	G	2.575e^-4	0.821	INTRON Mp
2R	8137351	2R_8137351_SNP [dm3] 2R_12249846_SNP [dm6]	G	A	2.583e^-4	0.821	INTERGENIC
3L	3789457	3L_3789457_SNP [dm3] 3L_3789457_SNP [dm6]	T	C	2.583e^-4	0.821	INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13982681	2L_13982681_DEL [dm3] 2L_13982681_DEL [dm6]	AT	G	2.586e^-4	0.821	UTR_3_PRIME NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
X	17179354	X_17179354_SNP [dm3] X_17285321_SNP [dm6]	G	C	2.604e^-4	0.821	UPSTREAM CG8661 DOWNSTREAM Fim INTRON CG5445
3L	4131691	3L_4131691_SNP [dm3] 3L_4131691_SNP [dm6]	G	A	2.605e^-4	0.821	INTRON ens
X	8121544	X_8121544_SNP [dm3] X_8227511_SNP [dm6]	A	T	2.607e^-4	0.821	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	17866584	2R_17866584_SNP [dm3] 2R_21979079_SNP [dm6]	C	T	2.616e^-4	0.821	SYNONYMOUS_CODING Gr58b UPSTREAM Gr58a	TF binding site mE1_TFBS_cad
3R	16353683	3R_16353683_SNP [dm3] 3R_20527961_SNP [dm6]	G	T	2.616e^-4	0.821	INTERGENIC
2L	17805147	2L_17805147_DEL [dm3] 2L_17805147_DEL [dm6]	CTATTG	T	2.616e^-4	0.821	INTRON CadN2
2L	7946802	2L_7946802_SNP [dm3] 2L_7946802_SNP [dm6]	A	G	2.628e^-4	0.821	INTRON Snoo
2L	7946809	2L_7946809_SNP [dm3] 2L_7946809_SNP [dm6]	A	T	2.628e^-4	0.821	INTRON Snoo
X	7591834	X_7591834_SNP [dm3] X_7697801_SNP [dm6]	C	A	2.636e^-4	0.821	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	21061116	2L_21061116_SNP [dm3] 2L_21061116_SNP [dm6]	C	G	2.645e^-4	0.821	INTRON CG9265
X	18698620	X_18698620_SNP [dm3] X_18804587_SNP [dm6]	T	C	2.665e^-4	0.821	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
X	10411936	X_10411936_SNP [dm3] X_10517903_SNP [dm6]	T	A	2.672e^-4	0.821	INTRON spri	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10970132	2R_10970132_SNP [dm3] 2R_15082627_SNP [dm6]	C	T	2.695e^-4	0.821	INTERGENIC
3L	18210351	3L_18210351_SNP [dm3] 3L_18217251_SNP [dm6]	C	T	2.698e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2597067	2L_2597067_SNP [dm3] 2L_2597067_SNP [dm6]	T	G	2.709e^-4	0.821	INTERGENIC
2L	16713868	2L_16713868_SNP [dm3] 2L_16713868_SNP [dm6]	C	T	2.720e^-4	0.821	INTRON CG31808
X	9226439	X_9226439_SNP [dm3] X_9332406_SNP [dm6]	G	A	2.753e^-4	0.821	INTRON CG34449
2R	12379059	2R_12379059_SNP [dm3] 2R_16491554_SNP [dm6]	G	C	2.755e^-4	0.821	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
X	11056113	X_11056113_SNP [dm3] X_11162080_SNP [dm6]	C	A	2.755e^-4	0.821	SPLICE_SITE_REGION Dlic INTRON Dlic	TF binding site mE1_TFBS_sens
2R	16683146	2R_16683146_SNP [dm3] 2R_20795641_SNP [dm6]	T	A	2.780e^-4	0.821	INTERGENIC
3L	9516639	3L_9516639_SNP [dm3] 3L_9523539_SNP [dm6]	A	C	2.781e^-4	0.821	INTRON CG33700
2L	4933836	2L_4933836_SNP [dm3] 2L_4933836_SNP [dm6]	G	A	2.783e^-4	0.821	SYNONYMOUS_CODING hoe2
2R	13000747	2R_13000747_SNP [dm3] 2R_17113242_SNP [dm6]	C	G	2.787e^-4	0.821	INTRON CG15611
2R	6786386	2R_6786386_SNP [dm3] 2R_10898881_SNP [dm6]	C	G	2.806e^-4	0.821	SYNONYMOUS_CODING Rpb5 UPSTREAM CG7712	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1636049	3L_1636049_SNP [dm3] 3L_1636049_SNP [dm6]	A	G	2.807e^-4	0.821	INTRON nSyb	TF binding site mE1_TFBS_HSA
3R	23851553	3R_23851553_SNP [dm3] 3R_28025831_SNP [dm6]	G	T	2.811e^-4	0.821	UPSTREAM CG34362 INTERGENIC
3L	7951753	3L_7951753_SNP [dm3] 3L_7958653_SNP [dm6]	A	C	2.812e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	7177502	3R_7177502_SNP [dm3] 3R_11351780_SNP [dm6]	A	G	2.812e^-4	0.821	INTRON pros & 2 others	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	25535452	3R_25535452_DEL [dm3] 3R_29709730_DEL [dm6]	AAA	A	2.814e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20281901	3R_20281901_SNP [dm3] 3R_24456179_SNP [dm6]	A	G	2.821e^-4	0.821	INTRON nAChRalpha1
2L	11017657	2L_11017657_SNP [dm3] 2L_11017657_SNP [dm6]	C	G	2.829e^-4	0.821	SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11017665	2L_11017665_SNP [dm3] 2L_11017665_SNP [dm6]	C	T	2.829e^-4	0.821	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel
2L	11017698	2L_11017698_SNP [dm3] 2L_11017698_SNP [dm6]	A	C	2.829e^-4	0.821	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel	TF binding site mE1_TFBS_sens
2L	11017882	2L_11017882_SNP [dm3] 2L_11017882_SNP [dm6]	T	C	2.829e^-4	0.821	SYNONYMOUS_CODING CG14913 INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	13542528	3L_13542528_SNP [dm3] 3L_13549428_SNP [dm6]	T	C	2.832e^-4	0.821	INTRON bru-3
2L	4201855	2L_4201855_SNP [dm3] 2L_4201855_SNP [dm6]	T	G	2.845e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
3L	12127177	3L_12127177_SNP [dm3] 3L_12134077_SNP [dm6]	C	T	2.850e^-4	0.821	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
X	4525538	X_4525538_SNP [dm3] X_4631505_SNP [dm6]	A	G	2.858e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184
2L	13677147	2L_13677147_SNP [dm3] 2L_13677147_SNP [dm6]	G	T	2.864e^-4	0.821	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
3R	9299173	3R_9299173_SNP [dm3] 3R_13473451_SNP [dm6]	T	G	2.874e^-4	0.821	INTERGENIC
3R	23629907	3R_23629907_SNP [dm3] 3R_27804185_SNP [dm6]	A	C	2.874e^-4	0.821	INTRON CG34353
3L	22169345	3L_22169345_SNP [dm3] 3L_22176245_SNP [dm6]	A	C	2.877e^-4	0.821	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
X	19877009	X_19877009_SNP [dm3] X_19982976_SNP [dm6]	A	G	2.889e^-4	0.821	INTERGENIC
X	19877503	X_19877503_SNP [dm3] X_19983470_SNP [dm6]	C	G	2.889e^-4	0.821	INTERGENIC
X	19877506	X_19877506_DEL [dm3] X_19983473_DEL [dm6]	CAATAAACAAATTCAAGTGA...	C	2.889e^-4	0.821	INTERGENIC
X	19878888	X_19878888_SNP [dm3] X_19984855_SNP [dm6]	A	G	2.889e^-4	0.821	INTERGENIC
X	19878907	X_19878907_SNP [dm3] X_19984874_SNP [dm6]	A	T	2.889e^-4	0.821	INTERGENIC
X	19878938	X_19878938_SNP [dm3] X_19984905_SNP [dm6]	G	T	2.889e^-4	0.821	INTERGENIC
3L	9514051	3L_9514051_SNP [dm3] 3L_9520951_SNP [dm6]	C	G	2.899e^-4	0.821	INTRON CG33700
3R	24271885	3R_24271885_SNP [dm3] 3R_28446163_SNP [dm6]	G	A	2.906e^-4	0.821	INTRON beat-VI
X	7592013	X_7592013_SNP [dm3] X_7697980_SNP [dm6]	A	G	2.906e^-4	0.821	INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13998043	2L_13998043_SNP [dm3] 2L_13998043_SNP [dm6]	A	G	2.912e^-4	0.821	INTRON rk
3R	26820781	3R_26820781_SNP [dm3] 3R_30995059_SNP [dm6]	C	T	2.913e^-4	0.821	INTRON 5-HT7
3R	26820788	3R_26820788_SNP [dm3] 3R_30995066_SNP [dm6]	G	A	2.913e^-4	0.821	INTRON 5-HT7
3L	606509	3L_606509_SNP [dm3] 3L_606509_SNP [dm6]	A	G	2.923e^-4	0.821	UTR_5_PRIME Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	18118795	3L_18118795_SNP [dm3] 3L_18125695_SNP [dm6]	T	A	2.925e^-4	0.821	INTERGENIC
X	4525268	X_4525268_SNP [dm3] X_4631235_SNP [dm6]	G	T	2.928e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
3L	4464221	3L_4464221_SNP [dm3] 3L_4464221_SNP [dm6]	T	C	2.929e^-4	0.821	UPSTREAM CG15024 DOWNSTREAM CG32241 INTERGENIC
2R	15309036	2R_15309036_SNP [dm3] 2R_19421531_SNP [dm6]	A	G	2.972e^-4	0.821	INTRON hts	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14799505	2L_14799505_SNP [dm3] 2L_14799505_SNP [dm6]	C	T	2.977e^-4	0.821	INTERGENIC
3R	19625617	3R_19625617_SNP [dm3] 3R_23799895_SNP [dm6]	T	C	3.006e^-4	0.821	SYNONYMOUS_CODING mbc
3R	19625704	3R_19625704_SNP [dm3] 3R_23799982_SNP [dm6]	A	C	3.006e^-4	0.821	INTRON mbc
3R	16616726	3R_16616726_SNP [dm3] 3R_20791004_SNP [dm6]	A	G	3.031e^-4	0.821	INTRON Syp
3L	7603947	3L_7603947_SNP [dm3] 3L_7610847_SNP [dm6]	A	G	3.035e^-4	0.821	INTRON CG33275	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14095779	2R_14095779_SNP [dm3] 2R_18208274_SNP [dm6]	G	A	3.040e^-4	0.821	UTR_3_PRIME CG30114
X	19608050	X_19608050_DEL [dm3] X_19714017_DEL [dm6]	TT	T	3.046e^-4	0.821	UPSTREAM meso18E DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	10105470	3L_10105470_SNP [dm3] 3L_10112370_SNP [dm6]	T	C	3.057e^-4	0.821	INTRON dpr6
3R	20001121	3R_20001121_SNP [dm3] 3R_24175399_SNP [dm6]	T	C	3.058e^-4	0.821	INTRON CG13606
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	3.069e^-4	0.821	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	4023857	2R_4023857_SNP [dm3] 2R_8136352_SNP [dm6]	T	A	3.091e^-4	0.821	DOWNSTREAM Lpin INTERGENIC
3R	10832391	3R_10832391_SNP [dm3] 3R_15006669_SNP [dm6]	A	G	3.094e^-4	0.821	INTERGENIC
2L	21061357	2L_21061357_SNP [dm3] 2L_21061357_SNP [dm6]	C	T	3.097e^-4	0.821	INTRON CG9265
X	14033610	X_14033610_SNP [dm3] X_14139577_SNP [dm6]	C	T	3.129e^-4	0.821	INTERGENIC
2L	16780420	2L_16780420_SNP [dm3] 2L_16780420_SNP [dm6]	C	T	3.134e^-4	0.821	INTRON Mhc
2L	16782575	2L_16782575_SNP [dm3] 2L_16782575_SNP [dm6]	T	A	3.134e^-4	0.821	INTRON Mhc	TF binding site mE1_TFBS_chinmo
2L	16784650	2L_16784650_SNP [dm3] 2L_16784650_SNP [dm6]	C	T	3.134e^-4	0.821	INTRON Mhc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16785160	2L_16785160_SNP [dm3] 2L_16785160_SNP [dm6]	C	T	3.134e^-4	0.821	SYNONYMOUS_CODING Mhc	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	16786833	2L_16786833_SNP [dm3] 2L_16786833_SNP [dm6]	G	T	3.134e^-4	0.821	INTRON Mhc	TF binding site BDTNP1_TFBS_dl
2L	16789830	2L_16789830_SNP [dm3] 2L_16789830_SNP [dm6]	A	G	3.134e^-4	0.821	SYNONYMOUS_CODING Cyt-b5-r	TF binding site mE1_TFBS_cad
2L	16790189	2L_16790189_SNP [dm3] 2L_16790189_SNP [dm6]	A	T	3.134e^-4	0.821	INTRON Cyt-b5-r
2L	16791656	2L_16791656_SNP [dm3] 2L_16791656_SNP [dm6]	C	G	3.134e^-4	0.821	UTR_5_PRIME CG17928 UPSTREAM Cyt-b5-r	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	16791882	2L_16791882_SNP [dm3] 2L_16791882_SNP [dm6]	T	A	3.134e^-4	0.821	INTRON CG17928	TF binding site mE1_TFBS_Trl
2L	16792453	2L_16792453_SNP [dm3] 2L_16792453_SNP [dm6]	A	G	3.134e^-4	0.821	SYNONYMOUS_CODING CG17928
2L	16793735	2L_16793735_INS [dm3] 2L_16793735_INS [dm6]	G	TTTTGATATATTTT...	3.134e^-4	0.821	UPSTREAM Ugt36Ba DOWNSTREAM CG17928 INTERGENIC
2L	16857401	2L_16857401_DEL [dm3] 2L_16857401_DEL [dm6]	GAAATTTG	G	3.134e^-4	0.821	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	16860818	2L_16860818_SNP [dm3] 2L_16860818_SNP [dm6]	G	A	3.134e^-4	0.821	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
2L	16865199	2L_16865199_SNP [dm3] 2L_16865199_SNP [dm6]	C	G	3.134e^-4	0.821	INTERGENIC
2L	16867697	2L_16867697_SNP [dm3] 2L_16867697_SNP [dm6]	C	T	3.134e^-4	0.821	INTERGENIC
2L	16867767	2L_16867767_SNP [dm3] 2L_16867767_SNP [dm6]	G	T	3.134e^-4	0.821	INTERGENIC
2L	16867811	2L_16867811_SNP [dm3] 2L_16867811_SNP [dm6]	T	A	3.134e^-4	0.821	INTERGENIC
2L	16868984	2L_16868984_SNP [dm3] 2L_16868984_SNP [dm6]	G	C	3.134e^-4	0.821	UPSTREAM CR31781 INTERGENIC
X	7854275	X_7854275_SNP [dm3] X_7960242_SNP [dm6]	C	A	3.134e^-4	0.821	UPSTREAM sws INTRON sws EXON CR45620	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	26357957	3R_26357957_SNP [dm3] 3R_30532235_SNP [dm6]	A	G	3.134e^-4	0.821	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	7046323	2L_7046323_SNP [dm3] 2L_7046323_SNP [dm6]	G	A	3.136e^-4	0.821	UTR_5_PRIME milt INTRON milt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	20527710	3L_20527710_INS [dm3] 3L_20534610_INS [dm6]	C	CC	3.156e^-4	0.821	INTRON Rcd2 & 1 other
3R	22681452	3R_22681452_SNP [dm3] 3R_26855730_SNP [dm6]	T	C	3.157e^-4	0.821	INTRON Lerp
2L	13673116	2L_13673116_SNP [dm3] 2L_13673116_SNP [dm6]	T	A	3.160e^-4	0.821	DOWNSTREAM CG18507 INTERGENIC
2L	13673126	2L_13673126_SNP [dm3] 2L_13673126_SNP [dm6]	A	T	3.160e^-4	0.821	DOWNSTREAM CG18507 INTERGENIC
2L	13673129	2L_13673129_SNP [dm3] 2L_13673129_SNP [dm6]	A	G	3.160e^-4	0.821	DOWNSTREAM CG18507 INTERGENIC
2L	13673135	2L_13673135_SNP [dm3] 2L_13673135_SNP [dm6]	T	C	3.160e^-4	0.821	DOWNSTREAM CG18507 INTERGENIC
2L	985208	2L_985208_SNP [dm3] 2L_985208_SNP [dm6]	T	G	3.173e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5839211	3L_5839211_DEL [dm3] 3L_5846111_DEL [dm6]	TT	T	3.179e^-4	0.821	UPSTREAM vn INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	15297117	3L_15297117_SNP [dm3] 3L_15304017_SNP [dm6]	A	C	3.201e^-4	0.821	UPSTREAM CG7255 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15297167	3L_15297167_SNP [dm3] 3L_15304067_SNP [dm6]	T	G	3.201e^-4	0.821	UPSTREAM CG7255 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3L	7013838	3L_7013838_SNP [dm3] 3L_7020738_SNP [dm6]	T	C	3.208e^-4	0.821	INTRON Mp
2R	17315228	2R_17315228_SNP [dm3] 2R_21427723_SNP [dm6]	C	T	3.219e^-4	0.821	INTRON Sdc
X	21075739	X_21075739_SNP [dm3] X_21204712_SNP [dm6]	G	A	3.220e^-4	0.821	DOWNSTREAM CG32521 INTERGENIC
3L	6158837	3L_6158837_SNP [dm3] 3L_6165737_SNP [dm6]	T	C	3.224e^-4	0.821	UTR_3_PRIME CG10289
2L	6027284	2L_6027284_DEL [dm3] 2L_6027284_DEL [dm6]	GGTGGCTATGGAG...	G	3.232e^-4	0.821	INTRON CG9109
2L	11812342	2L_11812342_SNP [dm3] 2L_11812342_SNP [dm6]	A	G	3.238e^-4	0.821	SYNONYMOUS_CODING CycY	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	15039252	2L_15039252_INS [dm3] 2L_15039252_INS [dm6]	C	TCAGTTG	3.246e^-4	0.821	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	15039284	2L_15039284_SNP [dm3] 2L_15039284_SNP [dm6]	T	C	3.246e^-4	0.821	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl mE1_TFBS_Ubx
2L	3395963	2L_3395963_SNP [dm3] 2L_3395963_SNP [dm6]	C	G	3.247e^-4	0.821	INTERGENIC
3L	738951	3L_738951_SNP [dm3] 3L_738951_SNP [dm6]	C	T	3.249e^-4	0.821	INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
2R	546070	2R_546070_SNP [dm3] 2R_4658565_SNP [dm6]	A	C	3.249e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad
X	6859684	X_6859684_SNP [dm3] X_6965651_SNP [dm6]	T	G	3.253e^-4	0.821	SYNONYMOUS_CODING CG14431 INTRON CG32732	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	7604878	3L_7604878_DEL [dm3] 3L_7611778_DEL [dm6]	ACGTTGA	A	3.254e^-4	0.821	INTRON CG33275
3L	8666442	3L_8666442_SNP [dm3] 3L_8673342_SNP [dm6]	T	C	3.255e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2L	16857370	2L_16857370_SNP [dm3] 2L_16857370_SNP [dm6]	C	A	3.278e^-4	0.821	INTRON CG31809	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	10700282	2L_10700282_SNP [dm3] 2L_10700282_SNP [dm6]	T	C	3.283e^-4	0.821	INTRON Lip1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	12383509	3R_12383509_SNP [dm3] 3R_16557787_SNP [dm6]	A	T	3.283e^-4	0.821	INTRON CG42342
2L	14770692	2L_14770692_SNP [dm3] 2L_14770692_SNP [dm6]	C	T	3.290e^-4	0.821	INTERGENIC
2R	13001084	2R_13001084_SNP [dm3] 2R_17113579_SNP [dm6]	G	A	3.302e^-4	0.821	SPLICE_SITE_REGION CG15611 INTRON CG15611	TF binding site mE1_TFBS_cad
2R	13001098	2R_13001098_SNP [dm3] 2R_17113593_SNP [dm6]	T	C	3.302e^-4	0.821	INTRON CG15611	TF binding site mE1_TFBS_cad
2R	14916064	2R_14916064_SNP [dm3] 2R_19028559_SNP [dm6]	C	G	3.326e^-4	0.821	INTRON 5-HT1B
3R	5975765	3R_5975765_SNP [dm3] 3R_10150043_SNP [dm6]	T	C	3.348e^-4	0.821	INTRON Invadolysin
2R	18025452	2R_18025452_SNP [dm3] 2R_22137947_SNP [dm6]	T	A	3.364e^-4	0.821	UTR_5_PRIME a UPSTREAM CG11269 INTRON a
2R	20138566	2R_20138566_SNP [dm3] 2R_24251043_SNP [dm6]	G	A	3.364e^-4	0.821	SYNONYMOUS_CODING Ir60a UPSTREAM snoRNA:Me18S-A1597 INTRON nord	TF binding site mE1_TFBS_chinmo
2R	3156923	2R_3156923_SNP [dm3] 2R_7269418_SNP [dm6]	T	C	3.364e^-4	0.821	INTERGENIC
2R	8875165	2R_8875165_SNP [dm3] 2R_12987660_SNP [dm6]	A	C	3.364e^-4	0.821	INTERGENIC
2R	8875218	2R_8875218_SNP [dm3] 2R_12987713_SNP [dm6]	G	T	3.364e^-4	0.821	INTERGENIC
2R	8875250	2R_8875250_SNP [dm3] 2R_12987745_SNP [dm6]	T	A	3.364e^-4	0.821	INTERGENIC
X	15441037	X_15441037_SNP [dm3] X_15547004_SNP [dm6]	T	A	3.364e^-4	0.821	UPSTREAM CR44354 DOWNSTREAM CR44353 INTRON Ac13E
X	20117774	X_20117774_SNP [dm3] X_20246700_SNP [dm6]	C	T	3.364e^-4	0.821	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
X	20117778	X_20117778_SNP [dm3] X_20246704_SNP [dm6]	C	G	3.364e^-4	0.821	INTRON Peritrophin-A	TF binding site mE1_TFBS_chinmo
X	20123599	X_20123599_SNP [dm3] X_20252525_SNP [dm6]	G	A	3.364e^-4	0.821	SYNONYMOUS_CODING Rab10	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	3225578	X_3225578_SNP [dm3] X_3331545_SNP [dm6]	C	G	3.364e^-4	0.821	INTRON CR44886 & 1 other
3R	26040657	3R_26040657_SNP [dm3] 3R_30214935_SNP [dm6]	C	T	3.389e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	24269856	3R_24269856_SNP [dm3] 3R_28444134_SNP [dm6]	C	A	3.391e^-4	0.821	INTRON beat-VI
2L	6143268	2L_6143268_SNP [dm3] 2L_6143268_SNP [dm6]	C	A	3.401e^-4	0.821	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6143274	2L_6143274_SNP [dm3] 2L_6143274_SNP [dm6]	G	A	3.401e^-4	0.821	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1886351	2L_1886351_SNP [dm3] 2L_1886351_SNP [dm6]	G	A	3.415e^-4	0.821	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	22317616	3L_22317616_SNP [dm3] 3L_22324516_SNP [dm6]	C	T	3.417e^-4	0.821	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	22317673	3L_22317673_SNP [dm3] 3L_22324573_SNP [dm6]	G	T	3.417e^-4	0.821	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16861903	2L_16861903_SNP [dm3] 2L_16861903_SNP [dm6]	T	C	3.429e^-4	0.821	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
3L	11409476	3L_11409476_SNP [dm3] 3L_11416376_SNP [dm6]	T	C	3.437e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	19350089	X_19350089_SNP [dm3] X_19456056_SNP [dm6]	G	A	3.446e^-4	0.821	INTRON kek5
2L	14004420	2L_14004420_SNP [dm3] 2L_14004420_SNP [dm6]	G	T	3.466e^-4	0.821	INTERGENIC
2L	14936982	2L_14936982_SNP [dm3] 2L_14936982_SNP [dm6]	T	A	3.478e^-4	0.821	INTRON CG42313
3L	9514500	3L_9514500_SNP [dm3] 3L_9521400_SNP [dm6]	G	A	3.480e^-4	0.821	INTRON CG33700
3R	22460193	3R_22460193_SNP [dm3] 3R_26634471_SNP [dm6]	T	C	3.482e^-4	0.821	SYNONYMOUS_CODING TwdlH UPSTREAM TwdlR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13891155	2R_13891155_SNP [dm3] 2R_18003650_SNP [dm6]	A	G	3.492e^-4	0.821	INTRON dpr13
3L	6784354	3L_6784354_SNP [dm3] 3L_6791254_SNP [dm6]	G	A	3.494e^-4	0.821	SYNONYMOUS_CODING vvl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	21096826	X_21096826_SNP [dm3] X_21225799_SNP [dm6]	T	G	3.511e^-4	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8207786	3L_8207786_SNP [dm3] 3L_8214686_SNP [dm6]	G	A	3.533e^-4	0.821	UPSTREAM CG8012 INTERGENIC
X	1012714	X_1012714_SNP [dm3] X_1118681_SNP [dm6]	G	C	3.533e^-4	0.821	INTRON CG3655	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3L	10859245	3L_10859245_SNP [dm3] 3L_10866145_SNP [dm6]	C	T	3.537e^-4	0.821	INTRON tna	TF binding site BDTNP1_TFBS_dl
2R	8911925	2R_8911925_SNP [dm3] 2R_13024420_SNP [dm6]	A	G	3.553e^-4	0.821	INTERGENIC
2L	4201844	2L_4201844_SNP [dm3] 2L_4201844_SNP [dm6]	A	G	3.555e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201848	2L_4201848_SNP [dm3] 2L_4201848_SNP [dm6]	C	A	3.555e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201850	2L_4201850_SNP [dm3] 2L_4201850_SNP [dm6]	A	T	3.555e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201851	2L_4201851_SNP [dm3] 2L_4201851_SNP [dm6]	T	G	3.555e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201853	2L_4201853_SNP [dm3] 2L_4201853_SNP [dm6]	A	T	3.555e^-4	0.821	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201858	2L_4201858_SNP [dm3] 2L_4201858_SNP [dm6]	G	A	3.555e^-4	0.821	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201859	2L_4201859_SNP [dm3] 2L_4201859_SNP [dm6]	A	G	3.555e^-4	0.821	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	11698349	2L_11698349_SNP [dm3] 2L_11698349_SNP [dm6]	A	G	3.561e^-4	0.821	INTERGENIC
2L	6235788	2L_6235788_SNP [dm3] 2L_6235788_SNP [dm6]	A	G	3.561e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc
3R	11908350	3R_11908350_SNP [dm3] 3R_16082628_SNP [dm6]	A	G	3.562e^-4	0.821	INTRON Mhcl
2L	8649214	2L_8649214_SNP [dm3] 2L_8649214_SNP [dm6]	G	T	3.564e^-4	0.821	INTRON Sema-1a
3L	3361114	3L_3361114_SNP [dm3] 3L_3361114_SNP [dm6]	A	C	3.564e^-4	0.821	SYNONYMOUS_CODING kst	TF binding site mE1_TFBS_cad
X	20880818	X_20880818_SNP [dm3] X_21009791_SNP [dm6]	T	A	3.598e^-4	0.821	INTERGENIC
3L	13101134	3L_13101134_DEL [dm3] 3L_13108034_DEL [dm6]	AA	A	3.616e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	19877502	X_19877502_SNP [dm3] X_19983469_SNP [dm6]	G	A	3.617e^-4	0.821	INTERGENIC
3R	19726194	3R_19726194_SNP [dm3] 3R_23900472_SNP [dm6]	A	G	3.617e^-4	0.821	INTRON sba	TF binding site mE1_TFBS_chinmo
2L	13294051	2L_13294051_SNP [dm3] 2L_13294051_SNP [dm6]	G	T	3.618e^-4	0.821	DOWNSTREAM CG16824 INTRON CG31729	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16789821	2L_16789821_SNP [dm3] 2L_16789821_SNP [dm6]	C	T	3.620e^-4	0.821	NON_SYNONYMOUS_CODING Cyt-b5-r	TF binding site mE1_TFBS_cad
2L	8633348	2L_8633348_SNP [dm3] 2L_8633348_SNP [dm6]	A	T	3.623e^-4	0.821	INTRON Sema-1a
2R	7281670	2R_7281670_DEL [dm3] 2R_11394165_DEL [dm6]	GTTTATA	G	3.627e^-4	0.821	UPSTREAM tRNA:CR30257 INTRON sprt	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	18487483	3L_18487483_INS [dm3] 3L_18494383_INS [dm6]	A	AAATCAAAAACCAAA...	3.630e^-4	0.821	INTRON AstC-R2
3L	7604412	3L_7604412_SNP [dm3] 3L_7611312_SNP [dm6]	C	T	3.651e^-4	0.821	INTRON CG33275
2L	7946826	2L_7946826_SNP [dm3] 2L_7946826_SNP [dm6]	A	G	3.654e^-4	0.821	INTRON Snoo
2L	10153126	2L_10153126_SNP [dm3] 2L_10153126_SNP [dm6]	A	C	3.655e^-4	0.821	SYNONYMOUS_CODING CG4839 INTRON CG44153
3R	24135066	3R_24135066_SNP [dm3] 3R_28309344_SNP [dm6]	C	A	3.659e^-4	0.821	INTERGENIC
2L	15047507	2L_15047507_SNP [dm3] 2L_15047507_SNP [dm6]	C	T	3.667e^-4	0.821	SPLICE_SITE_REGION ck INTRON ck
2R	8283444	2R_8283444_SNP [dm3] 2R_12395939_SNP [dm6]	T	A	3.674e^-4	0.821	NON_SYNONYMOUS_CODING CG30048 UTR_5_PRIME CG30048
3L	14378205	3L_14378205_SNP [dm3] 3L_14385105_SNP [dm6]	A	G	3.681e^-4	0.821	INTERGENIC
X	22112782	X_22112782_SNP [dm3] X_22710946_SNP [dm6]	C	T	3.681e^-4	0.821	INTRON CR44997	transposable element FlyBase
X	21946339	X_21946339_SNP [dm3] X_22544503_SNP [dm6]	A	T	3.685e^-4	0.821	UPSTREAM CG17599 INTERGENIC
X	4525514	X_4525514_SNP [dm3] X_4631481_SNP [dm6]	C	A	3.688e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184
X	4525561	X_4525561_SNP [dm3] X_4631528_SNP [dm6]	C	G	3.688e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184
2R	17399839	2R_17399839_SNP [dm3] 2R_21512334_SNP [dm6]	T	C	3.710e^-4	0.821	INTRON MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21257274	3R_21257274_SNP [dm3] 3R_25431552_SNP [dm6]	C	T	3.730e^-4	0.821	INTRON Fur1
2L	15039259	2L_15039259_SNP [dm3] 2L_15039259_SNP [dm6]	C	T	3.745e^-4	0.821	UPSTREAM Su_H_ & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	12369299	2R_12369299_SNP [dm3] 2R_16481794_SNP [dm6]	C	T	3.745e^-4	0.821	INTERGENIC
3R	23135541	3R_23135541_SNP [dm3] 3R_27309819_SNP [dm6]	G	A	3.749e^-4	0.821	INTRON CG3339
3R	23934030	3R_23934030_SNP [dm3] 3R_28108308_SNP [dm6]	G	A	3.754e^-4	0.821	INTERGENIC
X	11116418	X_11116418_SNP [dm3] X_11222385_SNP [dm6]	G	A	3.761e^-4	0.821	UTR_3_PRIME CG44422 DOWNSTREAM CG44422 INTRON CG44422
3R	24007475	3R_24007475_SNP [dm3] 3R_28181753_SNP [dm6]	G	A	3.764e^-4	0.821	INTRON CG34354
X	19910729	X_19910729_SNP [dm3] X_20016696_SNP [dm6]	A	C	3.765e^-4	0.821	INTRON Dop2R
2L	703744	2L_703744_SNP [dm3] 2L_703744_SNP [dm6]	G	A	3.779e^-4	0.821	INTRON ds
2L	799625	2L_799625_SNP [dm3] 2L_799625_SNP [dm6]	A	T	3.780e^-4	0.821	UPSTREAM CR45259 INTERGENIC
2L	799626	2L_799626_SNP [dm3] 2L_799626_SNP [dm6]	T	A	3.780e^-4	0.821	UPSTREAM CR45259 INTERGENIC
X	19910721	X_19910721_SNP [dm3] X_20016688_SNP [dm6]	C	T	3.782e^-4	0.821	INTRON Dop2R
X	16700229	X_16700229_SNP [dm3] X_16806196_SNP [dm6]	T	C	3.786e^-4	0.821	START_GAINED ppk28 UTR_5_PRIME ppk28 DOWNSTREAM CG13005 EXON CR44053
3R	18624668	3R_18624668_SNP [dm3] 3R_22798946_SNP [dm6]	G	A	3.792e^-4	0.821	INTERGENIC
2R	6574400	2R_6574400_SNP [dm3] 2R_10686895_SNP [dm6]	A	G	3.794e^-4	0.821	INTRON stan
2L	5619093	2L_5619093_SNP [dm3] 2L_5619093_SNP [dm6]	A	T	3.818e^-4	0.821	DOWNSTREAM CR44796 INTERGENIC
2R	3819078	2R_3819078_SNP [dm3] 2R_7931573_SNP [dm6]	G	C	3.827e^-4	0.821	UPSTREAM CG30381 & 1 other INTRON rnh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
2R	3819082	2R_3819082_SNP [dm3] 2R_7931577_SNP [dm6]	A	T	3.827e^-4	0.821	UPSTREAM CG30381 & 1 other INTRON rnh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_ttk mE1_TFBS_Ubx
3L	1178786	3L_1178786_SNP [dm3] 3L_1178786_SNP [dm6]	A	G	3.831e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10970102	2R_10970102_SNP [dm3] 2R_15082597_SNP [dm6]	T	A	3.840e^-4	0.821	INTERGENIC
3R	16322762	3R_16322762_SNP [dm3] 3R_20497040_SNP [dm6]	T	A	3.840e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	22141543	3R_22141543_SNP [dm3] 3R_26315821_SNP [dm6]	T	A	3.847e^-4	0.821	INTERGENIC
X	20880891	X_20880891_DEL [dm3] X_21009864_DEL [dm6]	TTTAAAAAAAAGAATCACTC...	T	3.850e^-4	0.821	INTERGENIC
X	20881422	X_20881422_SNP [dm3] X_21010395_SNP [dm6]	C	T	3.850e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	20882612	X_20882612_DEL [dm3] X_21011585_DEL [dm6]	TGATATAAATGCAT...	T	3.850e^-4	0.821	INTERGENIC
X	20882644	X_20882644_SNP [dm3] X_21011617_SNP [dm6]	C	T	3.850e^-4	0.821	INTERGENIC
X	20882658	X_20882658_SNP [dm3] X_21011631_SNP [dm6]	G	A	3.850e^-4	0.821	INTERGENIC
X	12759901	X_12759901_SNP [dm3] X_12865868_SNP [dm6]	G	A	3.875e^-4	0.821	INTRON Pde9
3L	606115	3L_606115_SNP [dm3] 3L_606115_SNP [dm6]	C	T	3.894e^-4	0.821	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
3L	606474	3L_606474_SNP [dm3] 3L_606474_SNP [dm6]	G	A	3.898e^-4	0.821	SYNONYMOUS_CODING Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
X	19879167	X_19879167_SNP [dm3] X_19985134_SNP [dm6]	G	A	3.901e^-4	0.821	INTERGENIC
2R	7036648	2R_7036648_SNP [dm3] 2R_11149143_SNP [dm6]	A	G	3.923e^-4	0.821	SYNONYMOUS_CODING CG12391 INTRON CG13229	TF binding site mE1_TFBS_cad
X	20876478	X_20876478_SNP [dm3] X_21005451_SNP [dm6]	T	C	3.927e^-4	0.821	INTERGENIC
X	20882725	X_20882725_SNP [dm3] X_21011698_SNP [dm6]	T	C	3.941e^-4	0.821	INTERGENIC
X	20882981	X_20882981_INS [dm3] X_21011954_INS [dm6]	G	GG	3.941e^-4	0.821	INTERGENIC
X	8374781	X_8374781_SNP [dm3] X_8480748_SNP [dm6]	C	A	3.941e^-4	0.821	DOWNSTREAM Cp36 INTRON CG33223
3L	18280989	3L_18280989_SNP [dm3] 3L_18287889_SNP [dm6]	C	A	3.941e^-4	0.821	INTERGENIC
2R	3816422	2R_3816422_SNP [dm3] 2R_7928917_SNP [dm6]	C	A	3.945e^-4	0.821	SYNONYMOUS_CODING CG8791 DOWNSTREAM CG30381	TF binding site mE1_TFBS_cad
3R	23147826	3R_23147826_SNP [dm3] 3R_27322104_SNP [dm6]	G	T	3.947e^-4	0.821	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13672957	2L_13672957_SNP [dm3] 2L_13672957_SNP [dm6]	T	A	3.948e^-4	0.821	UTR_3_PRIME CG18507
3L	6716460	3L_6716460_SNP [dm3] 3L_6723360_SNP [dm6]	A	G	3.948e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs
2R	10542516	2R_10542516_SNP [dm3] 2R_14655011_SNP [dm6]	T	C	3.950e^-4	0.821	INTERGENIC
2R	20205866	2R_20205866_SNP [dm3] 2R_24318343_SNP [dm6]	T	C	3.961e^-4	0.821	INTERGENIC
3R	2256286	3R_2256286_DEL [dm3] 3R_6430564_DEL [dm6]	CAGAGAATC	C	3.964e^-4	0.821	INTRON gpp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16878409	2L_16878409_SNP [dm3] 2L_16878409_SNP [dm6]	C	A	3.995e^-4	0.821	UTR_3_PRIME CG32832 DOWNSTREAM CG32832 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	16867707	2L_16867707_SNP [dm3] 2L_16867707_SNP [dm6]	C	A	3.995e^-4	0.821	INTERGENIC
3L	4426085	3L_4426085_SNP [dm3] 3L_4426085_SNP [dm6]	T	C	4.046e^-4	0.821	SYNONYMOUS_CODING CG15020
2R	8279361	2R_8279361_SNP [dm3] 2R_12391856_SNP [dm6]	T	G	4.053e^-4	0.821	UPSTREAM Cpr49Ad INTERGENIC
2L	7995064	2L_7995064_SNP [dm3] 2L_7995064_SNP [dm6]	T	C	4.059e^-4	0.821	SYNONYMOUS_CODING CG7227 UPSTREAM pes EXON CR44996	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	20299606	X_20299606_SNP [dm3] X_20428579_SNP [dm6]	G	T	4.061e^-4	0.821	SYNONYMOUS_CODING CG11710	TF binding site mE1_TFBS_inv
X	4525470	X_4525470_SNP [dm3] X_4631437_SNP [dm6]	C	A	4.063e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184
2L	11810919	2L_11810919_SNP [dm3] 2L_11810919_SNP [dm6]	C	G	4.063e^-4	0.821	UTR_3_PRIME CycY
2R	1719537	2R_1719537_SNP [dm3] 2R_5832032_SNP [dm6]	A	G	4.073e^-4	0.821	INTRON dpr12
3L	10861742	3L_10861742_SNP [dm3] 3L_10868642_SNP [dm6]	T	C	4.082e^-4	0.821	INTRON tna
2L	13909692	2L_13909692_SNP [dm3] 2L_13909692_SNP [dm6]	A	C	4.086e^-4	0.821	DOWNSTREAM Ance INTRON Ance-2	TF binding site mE1_TFBS_cad
3R	19571189	3R_19571189_SNP [dm3] 3R_23745467_SNP [dm6]	A	C	4.096e^-4	0.821	INTRON Hmgcr
2L	18121085	2L_18121085_SNP [dm3] 2L_18121085_SNP [dm6]	C	G	4.102e^-4	0.821	INTRON CG5758
2L	18121323	2L_18121323_SNP [dm3] 2L_18121323_SNP [dm6]	C	A	4.102e^-4	0.821	INTRON CG5758
2L	13316191	2L_13316191_SNP [dm3] 2L_13316191_SNP [dm6]	G	C	4.108e^-4	0.821	INTRON CG43778
2R	14095695	2R_14095695_SNP [dm3] 2R_18208190_SNP [dm6]	G	C	4.124e^-4	0.821	NON_SYNONYMOUS_CODING CG30114
3L	16864741	3L_16864741_SNP [dm3] 3L_16871641_SNP [dm6]	G	A	4.126e^-4	0.821	INTRON Lmpt
X	20876937	X_20876937_SNP [dm3] X_21005910_SNP [dm6]	T	A	4.131e^-4	0.821	INTERGENIC
3L	18856003	3L_18856003_SNP [dm3] 3L_18862903_SNP [dm6]	G	T	4.135e^-4	0.821	UPSTREAM CG6865 INTERGENIC
3R	17714319	3R_17714319_SNP [dm3] 3R_21888597_SNP [dm6]	C	T	4.136e^-4	0.821	UPSTREAM CR43844 INTRON CG6678	TF binding site mE1_TFBS_chinmo
2R	19196899	2R_19196899_SNP [dm3] 2R_23309376_SNP [dm6]	G	T	4.138e^-4	0.821	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	18873101	2L_18873101_SNP [dm3] 2L_18873101_SNP [dm6]	G	A	4.139e^-4	0.821	INTRON tup	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12937248	3L_12937248_SNP [dm3] 3L_12944148_SNP [dm6]	G	T	4.164e^-4	0.821	INTERGENIC
2R	3839488	2R_3839488_SNP [dm3] 2R_7951983_SNP [dm6]	G	T	4.166e^-4	0.821	NON_SYNONYMOUS_CODING CG14764 DOWNSTREAM CG30378 INTRON CG14764
X	9373822	X_9373822_SNP [dm3] X_9479789_SNP [dm6]	C	A	4.171e^-4	0.821	INTRON mgl
2L	12134009	2L_12134009_SNP [dm3] 2L_12134009_SNP [dm6]	T	A	4.172e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12312554	2R_12312554_SNP [dm3] 2R_16425049_SNP [dm6]	G	A	4.173e^-4	0.821	INTRON Sema-2b
3R	21491672	3R_21491672_SNP [dm3] 3R_25665950_SNP [dm6]	C	T	4.181e^-4	0.821	UTR_5_PRIME Lgr3 DOWNSTREAM RASSF8	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18365511	3L_18365511_SNP [dm3] 3L_18372411_SNP [dm6]	T	C	4.189e^-4	0.821	INTERGENIC
2L	6949904	2L_6949904_SNP [dm3] 2L_6949904_SNP [dm6]	A	G	4.205e^-4	0.821	SYNONYMOUS_CODING Gas41 UPSTREAM SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	11460234	3L_11460234_SNP [dm3] 3L_11467134_SNP [dm6]	G	A	4.217e^-4	0.821	INTERGENIC
2R	8873274	2R_8873274_SNP [dm3] 2R_12985769_SNP [dm6]	C	A	4.218e^-4	0.821	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8873321	2R_8873321_SNP [dm3] 2R_12985816_SNP [dm6]	G	A	4.218e^-4	0.821	EXON CR44339	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	18914053	2R_18914053_SNP [dm3] 2R_23026530_SNP [dm6]	C	T	4.227e^-4	0.821	INTRON twi & 1 other
3R	24337539	3R_24337539_SNP [dm3] 3R_28511817_SNP [dm6]	C	T	4.227e^-4	0.821	SYNONYMOUS_CODING Dhc98D
2L	16860815	2L_16860815_DEL [dm3] 2L_16860815_DEL [dm6]	AA	A	4.233e^-4	0.821	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
2L	16790658	2L_16790658_SNP [dm3] 2L_16790658_SNP [dm6]	C	A	4.235e^-4	0.821	UTR_5_PRIME Cyt-b5-r UPSTREAM CG17928
2L	13314284	2L_13314284_SNP [dm3] 2L_13314284_SNP [dm6]	G	A	4.241e^-4	0.821	INTRON CG43778
2L	1507915	2L_1507915_SNP [dm3] 2L_1507915_SNP [dm6]	A	T	4.254e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	15972494	2R_15972494_SNP [dm3] 2R_20084989_SNP [dm6]	G	C	4.262e^-4	0.821	EXON CR44632
3L	12563378	3L_12563378_SNP [dm3] 3L_12570278_SNP [dm6]	C	T	4.266e^-4	0.821	INTRON sowah	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	389478	3L_389478_SNP [dm3] 3L_389478_SNP [dm6]	G	A	4.288e^-4	0.821	INTRON trh
3L	7073913	3L_7073913_SNP [dm3] 3L_7080813_SNP [dm6]	A	C	4.311e^-4	0.821	INTERGENIC
3L	7073917	3L_7073917_SNP [dm3] 3L_7080817_SNP [dm6]	G	T	4.311e^-4	0.821	INTERGENIC
2R	17078504	2R_17078504_SNP [dm3] 2R_21190999_SNP [dm6]	C	T	4.328e^-4	0.821	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	19116616	3R_19116616_SNP [dm3] 3R_23290894_SNP [dm6]	A	C	4.328e^-4	0.821	UTR_3_PRIME pnt UPSTREAM CG4434 DOWNSTREAM pnt
3R	5560182	3R_5560182_SNP [dm3] 3R_9734460_SNP [dm6]	T	A	4.333e^-4	0.821	UTR_3_PRIME CG12950 DOWNSTREAM CG12950
3L	15301469	3L_15301469_SNP [dm3] 3L_15308369_SNP [dm6]	A	G	4.340e^-4	0.821	SYNONYMOUS_CODING CG7255
X	18724541	X_18724541_SNP [dm3] X_18830508_SNP [dm6]	G	C	4.347e^-4	0.821	UPSTREAM CG7101 DOWNSTREAM CG42450 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	11056112	X_11056112_SNP [dm3] X_11162079_SNP [dm6]	C	A	4.352e^-4	0.821	SPLICE_SITE_REGION Dlic INTRON Dlic	TF binding site mE1_TFBS_sens
X	12431811	X_12431811_SNP [dm3] X_12537778_SNP [dm6]	A	G	4.361e^-4	0.821	INTRON CG43921
2R	11795361	2R_11795361_SNP [dm3] 2R_15907856_SNP [dm6]	G	A	4.372e^-4	0.821	INTRON sli
3L	1042190	3L_1042190_SNP [dm3] 3L_1042190_SNP [dm6]	G	A	4.385e^-4	0.821	INTRON bab1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	10216633	2L_10216633_SNP [dm3] 2L_10216633_SNP [dm6]	G	A	4.386e^-4	0.821	SYNONYMOUS_CODING Npc1a	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2L	10526350	2L_10526350_SNP [dm3] 2L_10526350_SNP [dm6]	C	T	4.387e^-4	0.821	INTERGENIC
2L	12607055	2L_12607055_SNP [dm3] 2L_12607055_SNP [dm6]	A	C	4.399e^-4	0.821	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna mE1_TFBS_HSA
X	19877010	X_19877010_SNP [dm3] X_19982977_SNP [dm6]	G	A	4.417e^-4	0.821	INTERGENIC
2R	20585045	2R_20585045_SNP [dm3] 2R_24697522_SNP [dm6]	A	G	4.420e^-4	0.821	UTR_3_PRIME Mid1
2L	16860832	2L_16860832_DEL [dm3] 2L_16860832_DEL [dm6]	TT	T	4.431e^-4	0.821	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
2R	18837272	2R_18837272_DEL [dm3] 2R_22949749_DEL [dm6]	CGTCCT	C	4.447e^-4	0.821	INTERGENIC
2R	18057474	2R_18057474_SNP [dm3] 2R_22169969_SNP [dm6]	G	A	4.448e^-4	0.821	NON_SYNONYMOUS_CODING a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3174808	2L_3174808_SNP [dm3] 2L_3174808_SNP [dm6]	T	A	4.449e^-4	0.821	UPSTREAM CG31698 DOWNSTREAM CG34393 & 1 other INTERGENIC
3L	743801	3L_743801_SNP [dm3] 3L_743801_SNP [dm6]	C	T	4.463e^-4	0.821	UPSTREAM tRNA:M-i:61D INTRON hng3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13722597	2L_13722597_SNP [dm3] 2L_13722597_SNP [dm6]	C	A	4.490e^-4	0.821	SYNONYMOUS_CODING CG9014	TF binding site BDTNP1_TFBS_sna
X	20873799	X_20873799_SNP [dm3] X_21002772_SNP [dm6]	C	T	4.491e^-4	0.821	INTERGENIC	transposable element FlyBase
X	20875420	X_20875420_SNP [dm3] X_21004393_SNP [dm6]	G	T	4.491e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8374903	X_8374903_DEL [dm3] X_8480870_DEL [dm6]	ATAATAAC	A	4.491e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8374938	X_8374938_SNP [dm3] X_8480905_SNP [dm6]	A	T	4.491e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	11898306	3R_11898306_SNP [dm3] 3R_16072584_SNP [dm6]	A	G	4.493e^-4	0.821	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	25677719	3R_25677719_SNP [dm3] 3R_29851997_SNP [dm6]	G	T	4.496e^-4	0.821	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	606501	3L_606501_SNP [dm3] 3L_606501_SNP [dm6]	T	C	4.502e^-4	0.821	UTR_5_PRIME Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2L	20321384	2L_20321384_SNP [dm3] 2L_20321384_SNP [dm6]	A	C	4.510e^-4	0.821	INTRON spir	TF binding site mE1_TFBS_cad
2R	11046618	2R_11046618_SNP [dm3] 2R_15159113_SNP [dm6]	T	G	4.527e^-4	0.821	DOWNSTREAM CR43831 INTRON igl
2L	6129560	2L_6129560_SNP [dm3] 2L_6129560_SNP [dm6]	A	G	4.536e^-4	0.821	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14795929	2L_14795929_SNP [dm3] 2L_14795929_SNP [dm6]	C	T	4.543e^-4	0.821	SPLICE_SITE_REGION CG18420 INTRON CG18420
2R	12251250	2R_12251250_SNP [dm3] 2R_16363745_SNP [dm6]	T	C	4.548e^-4	0.821	NON_SYNONYMOUS_CODING CG15711 DOWNSTREAM CG6262
2L	13458331	2L_13458331_SNP [dm3] 2L_13458331_SNP [dm6]	C	A	4.551e^-4	0.821	DOWNSTREAM CG42809 INTRON CG42784 EXON CR45684
3L	9904192	3L_9904192_SNP [dm3] 3L_9911092_SNP [dm6]	G	T	4.577e^-4	0.821	INTRON CG34356
3L	1195187	3L_1195187_SNP [dm3] 3L_1195187_SNP [dm6]	A	G	4.582e^-4	0.821	NON_SYNONYMOUS_CODING LysX
3L	19496249	3L_19496249_SNP [dm3] 3L_19503149_SNP [dm6]	T	C	4.584e^-4	0.821	INTRON CG9452
3R	16321241	3R_16321241_SNP [dm3] 3R_20495519_SNP [dm6]	G	A	4.590e^-4	0.821	INTERGENIC
X	14822430	X_14822430_SNP [dm3] X_14928397_SNP [dm6]	C	T	4.596e^-4	0.821	NON_SYNONYMOUS_CODING CG32591 INTRON Flo2	TF binding site mE1_TFBS_chinmo
3R	12988238	3R_12988238_SNP [dm3] 3R_17162516_SNP [dm6]	C	T	4.602e^-4	0.821	INTRON Mur89F
3L	6791516	3L_6791516_SNP [dm3] 3L_6798416_SNP [dm6]	G	A	4.603e^-4	0.821	INTERGENIC
3R	17244473	3R_17244473_SNP [dm3] 3R_21418751_SNP [dm6]	A	T	4.608e^-4	0.821	INTRON lbl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	20876896	X_20876896_SNP [dm3] X_21005869_SNP [dm6]	G	C	4.617e^-4	0.821	INTERGENIC
X	20876928	X_20876928_SNP [dm3] X_21005901_SNP [dm6]	T	C	4.617e^-4	0.821	INTERGENIC
X	20876930	X_20876930_INS [dm3] X_21005903_INS [dm6]	G	GGGGCGAC	4.617e^-4	0.821	INTERGENIC
2R	1666664	2R_1666664_SNP [dm3] 2R_5779159_SNP [dm6]	C	T	4.631e^-4	0.821	INTRON ZnT41F
3R	17007573	3R_17007573_SNP [dm3] 3R_21181851_SNP [dm6]	T	A	4.641e^-4	0.821	INTRON SNF4Agamma	TF binding site mE1_TFBS_HSA
3R	19370476	3R_19370476_SNP [dm3] 3R_23544754_SNP [dm6]	T	C	4.644e^-4	0.821	INTERGENIC
3L	12865576	3L_12865576_SNP [dm3] 3L_12872476_SNP [dm6]	A	G	4.648e^-4	0.821	INTERGENIC
3R	18400396	3R_18400396_SNP [dm3] 3R_22574674_SNP [dm6]	T	A	4.659e^-4	0.821	INTRON CG33110
3R	23286919	3R_23286919_SNP [dm3] 3R_27461197_SNP [dm6]	G	A	4.662e^-4	0.821	INTERGENIC
3L	10377695	3L_10377695_SNP [dm3] 3L_10384595_SNP [dm6]	A	T	4.668e^-4	0.821	INTERGENIC
3R	19684946	3R_19684946_INS [dm3] 3R_23859224_INS [dm6]	T	TC	4.673e^-4	0.821	DOWNSTREAM snRNA:U1:95Ca & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	18408359	X_18408359_SNP [dm3] X_18514326_SNP [dm6]	T	G	4.696e^-4	0.821	INTRON CG6470
3L	9916451	3L_9916451_SNP [dm3] 3L_9923351_SNP [dm6]	C	A	4.696e^-4	0.821	INTRON CG34356
2L	7973206	2L_7973206_SNP [dm3] 2L_7973206_SNP [dm6]	A	C	4.702e^-4	0.821	INTRON Snoo
2R	8537552	2R_8537552_SNP [dm3] 2R_12650047_SNP [dm6]	C	T	4.709e^-4	0.821	INTERGENIC
2L	7973164	2L_7973164_SNP [dm3] 2L_7973164_SNP [dm6]	G	A	4.711e^-4	0.821	INTRON Snoo
2L	7514130	2L_7514130_SNP [dm3] 2L_7514130_SNP [dm6]	C	T	4.713e^-4	0.821	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
X	7585641	X_7585641_SNP [dm3] X_7691608_SNP [dm6]	A	C	4.724e^-4	0.821	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	20875674	X_20875674_SNP [dm3] X_21004647_SNP [dm6]	T	A	4.733e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
3R	22975335	3R_22975335_SNP [dm3] 3R_27149613_SNP [dm6]	T	C	4.739e^-4	0.821	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	14055024	2L_14055024_SNP [dm3] 2L_14055024_SNP [dm6]	C	G	4.752e^-4	0.821	INTRON nAChRalpha5
2L	14340169	2L_14340169_SNP [dm3] 2L_14340169_SNP [dm6]	C	A	4.763e^-4	0.821	DOWNSTREAM CG15286 INTRON CG33090
2L	5005045	2L_5005045_SNP [dm3] 2L_5005045_SNP [dm6]	A	G	4.769e^-4	0.821	UPSTREAM Rtnl1 INTRON Rtnl1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_Trl
3R	12379663	3R_12379663_SNP [dm3] 3R_16553941_SNP [dm6]	T	C	4.798e^-4	0.821	INTRON CG42342
2L	12133973	2L_12133973_SNP [dm3] 2L_12133973_SNP [dm6]	A	T	4.798e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12134004	2L_12134004_SNP [dm3] 2L_12134004_SNP [dm6]	C	A	4.798e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12134011	2L_12134011_SNP [dm3] 2L_12134011_SNP [dm6]	G	T	4.798e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	12134107	2L_12134107_SNP [dm3] 2L_12134107_SNP [dm6]	C	T	4.798e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16670422	2R_16670422_SNP [dm3] 2R_20782917_SNP [dm6]	T	G	4.798e^-4	0.821	INTERGENIC
X	2808831	X_2808831_SNP [dm3] X_2914798_SNP [dm6]	C	A	4.811e^-4	0.821	INTRON kirre
X	6860356	X_6860356_SNP [dm3] X_6966323_SNP [dm6]	C	T	4.818e^-4	0.821	UTR_3_PRIME CG14431 INTRON CG32732
3R	21264908	3R_21264908_SNP [dm3] 3R_25439186_SNP [dm6]	A	T	4.822e^-4	0.821	INTRON Fur1
3R	23154476	3R_23154476_SNP [dm3] 3R_27328754_SNP [dm6]	T	G	4.826e^-4	0.821	DOWNSTREAM CG3330 INTERGENIC
2L	2655965	2L_2655965_SNP [dm3] 2L_2655965_SNP [dm6]	T	C	4.836e^-4	0.821	SYNONYMOUS_CODING Prosbeta4R2 DOWNSTREAM Or23a
3L	10664130	3L_10664130_SNP [dm3] 3L_10671030_SNP [dm6]	G	T	4.839e^-4	0.821	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2628192	3L_2628192_SNP [dm3] 3L_2628192_SNP [dm6]	T	C	4.845e^-4	0.821	INTRON Pxn	TF binding site BDTNP1_TFBS_sna
2L	12809087	2L_12809087_SNP [dm3] 2L_12809087_SNP [dm6]	A	G	4.846e^-4	0.821	UPSTREAM CR43818 INTERGENIC
2R	16577581	2R_16577581_SNP [dm3] 2R_20690076_SNP [dm6]	G	A	4.847e^-4	0.821	INTERGENIC
2L	9983808	2L_9983808_SNP [dm3] 2L_9983808_SNP [dm6]	A	C	4.857e^-4	0.821	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26817196	3R_26817196_SNP [dm3] 3R_30991474_SNP [dm6]	T	A	4.868e^-4	0.821	DOWNSTREAM CG31007 INTRON 5-HT7
2L	18114190	2L_18114190_SNP [dm3] 2L_18114190_SNP [dm6]	G	T	4.874e^-4	0.821	UPSTREAM CG15152 INTERGENIC	transposable element FlyBase
3R	22057153	3R_22057153_SNP [dm3] 3R_26231431_SNP [dm6]	A	C	4.875e^-4	0.821	SYNONYMOUS_CODING CG12290	TF binding site mE1_TFBS_chinmo
2L	11698363	2L_11698363_SNP [dm3] 2L_11698363_SNP [dm6]	T	G	4.893e^-4	0.821	INTERGENIC
3L	1190815	3L_1190815_SNP [dm3] 3L_1190815_SNP [dm6]	C	T	4.901e^-4	0.821	UTR_3_PRIME Trh DOWNSTREAM CG13912	TF binding site mE1_TFBS_cad
2L	1245509	2L_1245509_SNP [dm3] 2L_1245509_SNP [dm6]	C	T	4.903e^-4	0.821	INTERGENIC
3L	3765935	3L_3765935_SNP [dm3] 3L_3765935_SNP [dm6]	A	C	4.904e^-4	0.821	UPSTREAM CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	11370995	3L_11370995_SNP [dm3] 3L_11377895_SNP [dm6]	C	A	4.924e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	16860831	2L_16860831_SNP [dm3] 2L_16860831_SNP [dm6]	A	G	4.928e^-4	0.821	UPSTREAM CR43858 INTRON CG6012	TF binding site BDTNP1_TFBS_twi
2R	20585047	2R_20585047_SNP [dm3] 2R_24697524_SNP [dm6]	A	T	4.931e^-4	0.821	UTR_3_PRIME Mid1
2L	1510900	2L_1510900_SNP [dm3] 2L_1510900_SNP [dm6]	G	C	4.957e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15296653	3L_15296653_SNP [dm3] 3L_15303553_SNP [dm6]	G	A	4.962e^-4	0.821	UPSTREAM Best3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	20880604	X_20880604_SNP [dm3] X_21009577_SNP [dm6]	C	T	4.970e^-4	0.821	INTERGENIC
2L	12797010	2L_12797010_SNP [dm3] 2L_12797010_SNP [dm6]	G	A	4.980e^-4	0.821	INTERGENIC
2L	7984302	2L_7984302_SNP [dm3] 2L_7984302_SNP [dm6]	G	A	4.980e^-4	0.821	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	12133988	2L_12133988_SNP [dm3] 2L_12133988_SNP [dm6]	T	C	5.003e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	1109557	3L_1109557_SNP [dm3] 3L_1109557_SNP [dm6]	G	T	5.004e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
X	20882657	X_20882657_SNP [dm3] X_21011630_SNP [dm6]	C	T	5.006e^-4	0.821	INTERGENIC
X	20882692	X_20882692_SNP [dm3] X_21011665_SNP [dm6]	C	T	5.006e^-4	0.821	INTERGENIC
3L	12068825	3L_12068825_DEL [dm3] 3L_12075725_DEL [dm6]	CC	C	5.032e^-4	0.821	INTRON Sema-5c
2L	5125729	2L_5125729_SNP [dm3] 2L_5125729_SNP [dm6]	G	A	5.036e^-4	0.821	INTRON Msp300	TF binding site mE1_TFBS_cad
3R	2872713	3R_2872713_SNP [dm3] 3R_7046991_SNP [dm6]	T	C	5.065e^-4	0.821	INTERGENIC
2L	10468573	2L_10468573_SNP [dm3] 2L_10468573_SNP [dm6]	T	G	5.067e^-4	0.821	INTRON RluA-1
2R	8309718	2R_8309718_SNP [dm3] 2R_12422213_SNP [dm6]	A	G	5.070e^-4	0.821	SYNONYMOUS_CODING CG8834 UPSTREAM CG8520	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	15415690	X_15415690_SNP [dm3] X_15521657_SNP [dm6]	T	G	5.080e^-4	0.821	INTRON Ac13E
3R	11904031	3R_11904031_SNP [dm3] 3R_16078309_SNP [dm6]	A	T	5.089e^-4	0.821	DOWNSTREAM CG32855 INTRON Mhcl
3L	12899251	3L_12899251_SNP [dm3] 3L_12906151_SNP [dm6]	A	T	5.093e^-4	0.821	INTERGENIC
2L	9421096	2L_9421096_SNP [dm3] 2L_9421096_SNP [dm6]	A	C	5.098e^-4	0.821	INTRON Mco1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	1909694	3L_1909694_SNP [dm3] 3L_1909694_SNP [dm6]	G	T	5.103e^-4	0.821	INTRON CG1887
3R	10832397	3R_10832397_SNP [dm3] 3R_15006675_SNP [dm6]	A	C	5.103e^-4	0.821	INTERGENIC
X	5168269	X_5168269_SNP [dm3] X_5274236_SNP [dm6]	A	T	5.104e^-4	0.821	INTERGENIC
X	20882987	X_20882987_SNP [dm3] X_21011960_SNP [dm6]	G	T	5.105e^-4	0.821	INTERGENIC
X	8384818	X_8384818_SNP [dm3] X_8490785_SNP [dm6]	T	C	5.118e^-4	0.821	UPSTREAM CG33181 INTRON CG33181	TF binding site BDTNP1_TFBS_dl
3R	17248754	3R_17248754_SNP [dm3] 3R_21423032_SNP [dm6]	G	A	5.120e^-4	0.821	INTRON lbl
2L	13210858	2L_13210858_SNP [dm3] 2L_13210858_SNP [dm6]	A	T	5.121e^-4	0.821	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14489661	2R_14489661_SNP [dm3] 2R_18602156_SNP [dm6]	G	A	5.134e^-4	0.821	INTRON GEFmeso
2L	19720598	2L_19720598_SNP [dm3] 2L_19720598_SNP [dm6]	C	G	5.144e^-4	0.821	INTRON Lar
3R	5971836	3R_5971836_SNP [dm3] 3R_10146114_SNP [dm6]	C	A	5.149e^-4	0.821	INTRON Invadolysin
X	19877488	X_19877488_SNP [dm3] X_19983455_SNP [dm6]	G	C	5.150e^-4	0.821	INTERGENIC
2L	11017848	2L_11017848_SNP [dm3] 2L_11017848_SNP [dm6]	C	T	5.164e^-4	0.821	NON_SYNONYMOUS_CODING CG14913 INTRON Samuel	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14177221	3L_14177221_SNP [dm3] 3L_14184121_SNP [dm6]	C	T	5.194e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	3266203	2R_3266203_SNP [dm3] 2R_7378698_SNP [dm6]	G	A	5.198e^-4	0.821	INTRON Dscam1	TF binding site BDTNP1_TFBS_twi
2L	5658816	2L_5658816_SNP [dm3] 2L_5658816_SNP [dm6]	A	T	5.200e^-4	0.821	UPSTREAM CG31646 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	8560049	2R_8560049_SNP [dm3] 2R_12672544_SNP [dm6]	C	G	5.225e^-4	0.821	SYNONYMOUS_CODING CG42708	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14573183	2R_14573183_SNP [dm3] 2R_18685678_SNP [dm6]	C	T	5.230e^-4	0.821	SYNONYMOUS_CODING CG44433
2R	16829665	2R_16829665_SNP [dm3] 2R_20942160_SNP [dm6]	A	G	5.240e^-4	0.821	INTERGENIC
3L	16414654	3L_16414654_SNP [dm3] 3L_16421554_SNP [dm6]	G	A	5.242e^-4	0.821	SYNONYMOUS_CODING CG33158	TF binding site mE1_TFBS_cad
2L	7973183	2L_7973183_SNP [dm3] 2L_7973183_SNP [dm6]	A	T	5.245e^-4	0.821	INTRON Snoo
2L	10126589	2L_10126589_SNP [dm3] 2L_10126589_SNP [dm6]	C	T	5.248e^-4	0.821	DOWNSTREAM CG34109 INTRON CG44153
2L	5868632	2L_5868632_SNP [dm3] 2L_5868632_SNP [dm6]	G	A	5.248e^-4	0.821	INTRON rau
X	21099104	X_21099104_SNP [dm3] X_21228077_SNP [dm6]	A	C	5.252e^-4	0.821	INTRON CG32521
X	21099107	X_21099107_SNP [dm3] X_21228080_SNP [dm6]	G	T	5.252e^-4	0.821	INTRON CG32521
X	18407118	X_18407118_INS [dm3] X_18513085_INS [dm6]	C	CGCCC	5.260e^-4	0.821	UTR_3_PRIME CG6470 UPSTREAM Ggt-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	16832852	2L_16832852_SNP [dm3] 2L_16832852_SNP [dm6]	A	G	5.270e^-4	0.821	DOWNSTREAM CG31739 INTRON CG13282
3R	21400577	3R_21400577_SNP [dm3] 3R_25574855_SNP [dm6]	T	C	5.275e^-4	0.821	INTRON msi
2R	6733081	2R_6733081_DEL [dm3] 2R_10845576_DEL [dm6]	CGGC	C	5.279e^-4	0.821	INTRON CG30015	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	10688181	3L_10688181_SNP [dm3] 3L_10695081_SNP [dm6]	T	G	5.288e^-4	0.821	SYNONYMOUS_CODING NijA UPSTREAM CG6463
2R	14716346	2R_14716346_SNP [dm3] 2R_18828841_SNP [dm6]	A	T	5.289e^-4	0.821	INTRON CG15097
2R	14716365	2R_14716365_SNP [dm3] 2R_18828860_SNP [dm6]	T	C	5.289e^-4	0.821	INTRON CG15097
3L	12127592	3L_12127592_SNP [dm3] 3L_12134492_SNP [dm6]	A	G	5.305e^-4	0.821	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
2L	16867885	2L_16867885_SNP [dm3] 2L_16867885_SNP [dm6]	G	C	5.308e^-4	0.821	INTERGENIC
3R	22731848	3R_22731848_SNP [dm3] 3R_26906126_SNP [dm6]	T	A	5.324e^-4	0.821	INTRON T48	regulatory region REDfly_CRMs
3R	26859402	3R_26859402_SNP [dm3] 3R_31033680_SNP [dm6]	C	T	5.327e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16878518	2L_16878518_SNP [dm3] 2L_16878518_SNP [dm6]	T	C	5.330e^-4	0.821	UTR_3_PRIME CG32832 UPSTREAM CG31743 & 1 other DOWNSTREAM CR31781	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13314326	2L_13314326_SNP [dm3] 2L_13314326_SNP [dm6]	G	A	5.345e^-4	0.821	INTRON CG43778
2L	6027016	2L_6027016_SNP [dm3] 2L_6027016_SNP [dm6]	T	C	5.346e^-4	0.821	INTRON CG9109
3R	7444499	3R_7444499_SNP [dm3] 3R_11618777_SNP [dm6]	A	T	5.346e^-4	0.821	INTRON Jupiter	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7450251	3R_7450251_SNP [dm3] 3R_11624529_SNP [dm6]	C	A	5.346e^-4	0.821	UTR_5_PRIME CG6808 DOWNSTREAM CG6813 INTRON CG14711
3R	22979475	3R_22979475_SNP [dm3] 3R_27153753_SNP [dm6]	T	G	5.349e^-4	0.821	INTRON Men-b
3L	3409898	3L_3409898_SNP [dm3] 3L_3409898_SNP [dm6]	A	G	5.353e^-4	0.821	INTRON sty	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	18609779	3R_18609779_SNP [dm3] 3R_22784057_SNP [dm6]	A	G	5.358e^-4	0.821	INTRON CG7029	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14706554	2R_14706554_SNP [dm3] 2R_18819049_SNP [dm6]	T	A	5.366e^-4	0.821	UPSTREAM Phb2 INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	11224959	X_11224959_SNP [dm3] X_11330926_SNP [dm6]	A	C	5.366e^-4	0.821	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	11224962	X_11224962_SNP [dm3] X_11330929_SNP [dm6]	T	A	5.366e^-4	0.821	SYNONYMOUS_CODING CG1657	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8647378	2L_8647378_SNP [dm3] 2L_8647378_SNP [dm6]	T	C	5.386e^-4	0.821	INTRON Sema-1a
2L	13171026	2L_13171026_SNP [dm3] 2L_13171026_SNP [dm6]	G	T	5.394e^-4	0.821	INTRON Sfmbt
3R	9282055	3R_9282055_SNP [dm3] 3R_13456333_SNP [dm6]	A	G	5.397e^-4	0.821	INTRON CR17025 & 1 other
3R	9282072	3R_9282072_SNP [dm3] 3R_13456350_SNP [dm6]	T	G	5.397e^-4	0.821	INTRON CR17025 & 1 other
X	8375043	X_8375043_INS [dm3] X_8481010_INS [dm6]	CA	AGAG	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375046	X_8375046_SNP [dm3] X_8481013_SNP [dm6]	A	T	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375052	X_8375052_INS [dm3] X_8481019_INS [dm6]	GT	AGAG	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375093	X_8375093_SNP [dm3] X_8481060_SNP [dm6]	C	A	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375151	X_8375151_DEL [dm3] X_8481118_DEL [dm6]	TCATC	A	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375168	X_8375168_SNP [dm3] X_8481135_SNP [dm6]	T	G	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375169	X_8375169_SNP [dm3] X_8481136_SNP [dm6]	G	T	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375172	X_8375172_SNP [dm3] X_8481139_SNP [dm6]	A	T	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375175	X_8375175_SNP [dm3] X_8481142_SNP [dm6]	A	T	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375176	X_8375176_SNP [dm3] X_8481143_SNP [dm6]	G	C	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375178	X_8375178_SNP [dm3] X_8481145_SNP [dm6]	G	A	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375181	X_8375181_SNP [dm3] X_8481148_SNP [dm6]	T	C	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375203	X_8375203_SNP [dm3] X_8481170_SNP [dm6]	A	G	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375250	X_8375250_SNP [dm3] X_8481217_SNP [dm6]	C	T	5.397e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	10052768	3R_10052768_SNP [dm3] 3R_14227046_SNP [dm6]	T	G	5.407e^-4	0.821	UPSTREAM CG9631 INTERGENIC
2L	15047439	2L_15047439_SNP [dm3] 2L_15047439_SNP [dm6]	C	T	5.410e^-4	0.821	SYNONYMOUS_CODING ck
3L	7994122	3L_7994122_SNP [dm3] 3L_8001022_SNP [dm6]	C	A	5.411e^-4	0.821	INTRON nmo
2R	12227200	2R_12227200_SNP [dm3] 2R_16339695_SNP [dm6]	A	C	5.443e^-4	0.821	NON_SYNONYMOUS_CODING Hmgs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17577994	2R_17577994_SNP [dm3] 2R_21690489_SNP [dm6]	A	G	5.449e^-4	0.821	UPSTREAM CG42496 & 1 other DOWNSTREAM CG10307 INTRON Tim10 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	20876487	X_20876487_SNP [dm3] X_21005460_SNP [dm6]	A	G	5.455e^-4	0.821	INTERGENIC
X	20876885	X_20876885_INS [dm3] X_21005858_INS [dm6]	G	GTAAACAAGCAAACACCCAA...	5.455e^-4	0.821	INTERGENIC
X	20876889	X_20876889_SNP [dm3] X_21005862_SNP [dm6]	A	G	5.455e^-4	0.821	INTERGENIC
X	20877405	X_20877405_SNP [dm3] X_21006378_SNP [dm6]	A	T	5.455e^-4	0.821	INTERGENIC
X	20877575	X_20877575_SNP [dm3] X_21006548_SNP [dm6]	G	A	5.455e^-4	0.821	INTERGENIC
X	20877596	X_20877596_SNP [dm3] X_21006569_SNP [dm6]	T	C	5.455e^-4	0.821	INTERGENIC
X	20877606	X_20877606_SNP [dm3] X_21006579_SNP [dm6]	C	T	5.455e^-4	0.821	INTERGENIC
X	20877623	X_20877623_SNP [dm3] X_21006596_SNP [dm6]	G	A	5.455e^-4	0.821	INTERGENIC
X	20879940	X_20879940_SNP [dm3] X_21008913_SNP [dm6]	G	T	5.455e^-4	0.821	INTERGENIC
X	8374616	X_8374616_INS [dm3] X_8480583_INS [dm6]	G	GG	5.455e^-4	0.821	DOWNSTREAM Cp36 INTRON CG33223
X	8374710	X_8374710_SNP [dm3] X_8480677_SNP [dm6]	T	C	5.455e^-4	0.821	DOWNSTREAM Cp36 INTRON CG33223
X	8374946	X_8374946_SNP [dm3] X_8480913_SNP [dm6]	G	A	5.455e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375090	X_8375090_SNP [dm3] X_8481057_SNP [dm6]	A	G	5.455e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
X	8375107	X_8375107_SNP [dm3] X_8481074_SNP [dm6]	G	A	5.455e^-4	0.821	UPSTREAM Cp38 DOWNSTREAM Cp36 INTRON CG33223
3R	13873031	3R_13873031_SNP [dm3] 3R_18047309_SNP [dm6]	A	G	5.508e^-4	0.821	SYNONYMOUS_CODING htl	TF binding site mE1_TFBS_sens
X	4525125	X_4525125_SNP [dm3] X_4631092_SNP [dm6]	A	C	5.514e^-4	0.821	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2L	81824	2L_81824_INS [dm3] 2L_81824_INS [dm6]	T	TA	5.534e^-4	0.821	DOWNSTREAM net INTERGENIC
2L	13998690	2L_13998690_SNP [dm3] 2L_13998690_SNP [dm6]	C	A	5.539e^-4	0.821	INTRON rk
X	20457037	X_20457037_SNP [dm3] X_20586010_SNP [dm6]	G	C	5.540e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	4131450	3L_4131450_SNP [dm3] 3L_4131450_SNP [dm6]	G	T	5.545e^-4	0.821	INTRON ens
2R	16431065	2R_16431065_SNP [dm3] 2R_20543560_SNP [dm6]	G	T	5.547e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9046785	2R_9046785_SNP [dm3] 2R_13159280_SNP [dm6]	G	C	5.552e^-4	0.821	UPSTREAM TppII & 1 other INTRON CG34439	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15299684	3L_15299684_SNP [dm3] 3L_15306584_SNP [dm6]	A	G	5.553e^-4	0.821	SYNONYMOUS_CODING CG7255
X	12759656	X_12759656_DEL [dm3] X_12865623_DEL [dm6]	TGTA	T	5.591e^-4	0.821	INTRON Pde9
X	12759661	X_12759661_SNP [dm3] X_12865628_SNP [dm6]	A	G	5.591e^-4	0.821	INTRON Pde9
X	12759673	X_12759673_SNP [dm3] X_12865640_SNP [dm6]	G	A	5.591e^-4	0.821	INTRON Pde9
X	12759678	X_12759678_DEL [dm3] X_12865645_DEL [dm6]	TTTGTTGATAT...	T	5.591e^-4	0.821	INTRON Pde9
X	17134692	X_17134692_SNP [dm3] X_17240659_SNP [dm6]	C	G	5.591e^-4	0.821	UTR_3_PRIME CG8915 DOWNSTREAM CG8915 INTRON f
2R	14453752	2R_14453752_SNP [dm3] 2R_18566247_SNP [dm6]	G	T	5.594e^-4	0.821	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9202684	2R_9202684_SNP [dm3] 2R_13315179_SNP [dm6]	A	T	5.601e^-4	0.821	INTERGENIC
2L	12853403	2L_12853403_INS [dm3] 2L_12853403_INS [dm6]	A	AG	5.610e^-4	0.821	INTERGENIC
3R	20904054	3R_20904054_SNP [dm3] 3R_25078332_SNP [dm6]	G	C	5.614e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
3L	1110255	3L_1110255_SNP [dm3] 3L_1110255_SNP [dm6]	C	G	5.620e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi
2L	5485077	2L_5485077_SNP [dm3] 2L_5485077_SNP [dm6]	A	T	5.629e^-4	0.821	INTERGENIC
2L	8649045	2L_8649045_SNP [dm3] 2L_8649045_SNP [dm6]	G	A	5.629e^-4	0.821	INTRON Sema-1a
3L	9515705	3L_9515705_SNP [dm3] 3L_9522605_SNP [dm6]	A	T	5.632e^-4	0.821	INTRON CG33700
2R	8251874	2R_8251874_SNP [dm3] 2R_12364369_SNP [dm6]	T	C	5.634e^-4	0.821	SPLICE_SITE_REGION CR33013 INTRON CR33013
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	5.649e^-4	0.821	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
2L	13298484	2L_13298484_SNP [dm3] 2L_13298484_SNP [dm6]	A	G	5.655e^-4	0.821	INTRON CG31729
2L	13298543	2L_13298543_SNP [dm3] 2L_13298543_SNP [dm6]	C	T	5.655e^-4	0.821	INTRON CG31729	TF binding site mE1_TFBS_cad
X	20875671	X_20875671_SNP [dm3] X_21004644_SNP [dm6]	G	T	5.658e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
2L	13271026	2L_13271026_SNP [dm3] 2L_13271026_SNP [dm6]	T	G	5.700e^-4	0.821	INTRON CG44085
2L	13271027	2L_13271027_SNP [dm3] 2L_13271027_SNP [dm6]	G	A	5.700e^-4	0.821	INTRON CG44085
2L	13271050	2L_13271050_SNP [dm3] 2L_13271050_SNP [dm6]	T	A	5.700e^-4	0.821	INTRON CG44085
2L	13271065	2L_13271065_SNP [dm3] 2L_13271065_SNP [dm6]	C	G	5.700e^-4	0.821	INTRON CG44085
2L	13280672	2L_13280672_SNP [dm3] 2L_13280672_SNP [dm6]	A	T	5.700e^-4	0.821	SYNONYMOUS_CODING CG44085 INTRON CG44085	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	13281144	2L_13281144_SNP [dm3] 2L_13281144_SNP [dm6]	G	A	5.700e^-4	0.821	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085
2L	13281145	2L_13281145_SNP [dm3] 2L_13281145_SNP [dm6]	T	A	5.700e^-4	0.821	NON_SYNONYMOUS_CODING CG44085 INTRON CG44085
3R	2200042	3R_2200042_SNP [dm3] 3R_6374320_SNP [dm6]	G	T	5.700e^-4	0.821	UPSTREAM CG42564 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_slp1
3R	2200088	3R_2200088_SNP [dm3] 3R_6374366_SNP [dm6]	C	A	5.700e^-4	0.821	UPSTREAM CG42564 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_slp1
X	7903662	X_7903662_SNP [dm3] X_8009629_SNP [dm6]	G	T	5.702e^-4	0.821	INTRON Tbh
3R	27181191	3R_27181191_SNP [dm3] 3R_31355469_SNP [dm6]	C	T	5.704e^-4	0.821	INTRON CG34347
3L	20201521	3L_20201521_SNP [dm3] 3L_20208421_SNP [dm6]	C	T	5.712e^-4	0.821	SYNONYMOUS_CODING CG6996	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20213165	3L_20213165_SNP [dm3] 3L_20220065_SNP [dm6]	G	C	5.712e^-4	0.821	NON_SYNONYMOUS_CODING CG6933 INTRON CG6933
3L	9005425	3L_9005425_SNP [dm3] 3L_9012325_SNP [dm6]	G	C	5.712e^-4	0.821	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4310777	3L_4310777_SNP [dm3] 3L_4310777_SNP [dm6]	C	T	5.714e^-4	0.821	INTERGENIC
3L	9516013	3L_9516013_DEL [dm3] 3L_9522913_DEL [dm6]	GG	G	5.729e^-4	0.821	INTRON CG33700
2L	10434612	2L_10434612_SNP [dm3] 2L_10434612_SNP [dm6]	G	A	5.729e^-4	0.821	SYNONYMOUS_CODING CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	20452814	X_20452814_SNP [dm3] X_20581787_SNP [dm6]	T	C	5.738e^-4	0.821	INTERGENIC
3L	731657	3L_731657_SNP [dm3] 3L_731657_SNP [dm6]	T	C	5.740e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	731658	3L_731658_SNP [dm3] 3L_731658_SNP [dm6]	T	A	5.740e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2R	8299010	2R_8299010_SNP [dm3] 2R_12411505_SNP [dm6]	C	T	5.742e^-4	0.821	DOWNSTREAM CG33626 INTRON CG33627
3L	4025468	3L_4025468_SNP [dm3] 3L_4025468_SNP [dm6]	G	A	5.748e^-4	0.821	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
3R	26923988	3R_26923988_SNP [dm3] 3R_31098266_SNP [dm6]	G	C	5.749e^-4	0.821	UPSTREAM CG11317 DOWNSTREAM CG15553 INTERGENIC
3L	14829443	3L_14829443_SNP [dm3] 3L_14836343_SNP [dm6]	A	T	5.770e^-4	0.821	INTRON CG17839
3L	17488676	3L_17488676_SNP [dm3] 3L_17495576_SNP [dm6]	T	G	5.797e^-4	0.821	DOWNSTREAM edin INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Trl
2L	16791331	2L_16791331_SNP [dm3] 2L_16791331_SNP [dm6]	A	G	5.808e^-4	0.821	UPSTREAM CG17928 & 1 other INTERGENIC	TF binding site mE1_TFBS_Trl
2L	3434330	2L_3434330_SNP [dm3] 2L_3434330_SNP [dm6]	G	A	5.828e^-4	0.821	INTERGENIC
3R	18893095	3R_18893095_SNP [dm3] 3R_23067373_SNP [dm6]	C	A	5.837e^-4	0.821	UPSTREAM CG17111 INTERGENIC
2R	18914078	2R_18914078_SNP [dm3] 2R_23026555_SNP [dm6]	T	C	5.838e^-4	0.821	INTRON twi & 1 other
3R	26455068	3R_26455068_SNP [dm3] 3R_30629346_SNP [dm6]	C	T	5.852e^-4	0.821	UPSTREAM CG2267 INTERGENIC
2R	7321882	2R_7321882_SNP [dm3] 2R_11434377_SNP [dm6]	C	G	5.860e^-4	0.821	INTERGENIC
X	21098352	X_21098352_SNP [dm3] X_21227325_SNP [dm6]	T	C	5.863e^-4	0.821	INTRON CG32521
2L	12134143	2L_12134143_SNP [dm3] 2L_12134143_SNP [dm6]	C	T	5.878e^-4	0.821	UPSTREAM rho-6 INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19116823	3R_19116823_SNP [dm3] 3R_23291101_SNP [dm6]	G	A	5.878e^-4	0.821	UTR_3_PRIME pnt UPSTREAM CG4434
3R	23157460	3R_23157460_SNP [dm3] 3R_27331738_SNP [dm6]	G	T	5.878e^-4	0.821	UPSTREAM CG3330 INTERGENIC
2L	9650896	2L_9650896_SNP [dm3] 2L_9650896_SNP [dm6]	C	T	5.889e^-4	0.821	SYNONYMOUS_CODING Apoltp
3L	22293981	3L_22293981_SNP [dm3] 3L_22300881_SNP [dm6]	G	T	5.910e^-4	0.821	SYNONYMOUS_CODING Ten-m	TF binding site mE1_TFBS_cad
2R	20576628	2R_20576628_SNP [dm3] 2R_24689105_SNP [dm6]	T	C	5.930e^-4	0.821	UPSTREAM Mmp1 INTERGENIC
3L	2169760	3L_2169760_SNP [dm3] 3L_2169760_SNP [dm6]	T	C	5.940e^-4	0.821	SYNONYMOUS_CODING CG5704 UPSTREAM CG15879
2R	8527743	2R_8527743_SNP [dm3] 2R_12640238_SNP [dm6]	C	T	5.941e^-4	0.821	SYNONYMOUS_CODING Iswi DOWNSTREAM CG8785	TF binding site mE1_TFBS_cad
3R	9282069	3R_9282069_SNP [dm3] 3R_13456347_SNP [dm6]	T	C	5.950e^-4	0.821	INTRON CR17025 & 1 other
2R	13336720	2R_13336720_SNP [dm3] 2R_17449215_SNP [dm6]	A	G	5.959e^-4	0.821	INTRON mthl3
2R	17353100	2R_17353100_SNP [dm3] 2R_21465595_SNP [dm6]	T	A	5.972e^-4	0.821	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4310810	3L_4310810_SNP [dm3] 3L_4310810_SNP [dm6]	G	A	6.004e^-4	0.821	INTERGENIC
2R	12995864	2R_12995864_SNP [dm3] 2R_17108359_SNP [dm6]	G	T	6.007e^-4	0.821	UPSTREAM CG15611 DOWNSTREAM CG30456 INTERGENIC
X	21098543	X_21098543_SNP [dm3] X_21227516_SNP [dm6]	A	T	6.007e^-4	0.821	INTRON CG32521
2L	7946827	2L_7946827_SNP [dm3] 2L_7946827_SNP [dm6]	C	T	6.056e^-4	0.821	INTRON Snoo
3L	2722466	3L_2722466_SNP [dm3] 3L_2722466_SNP [dm6]	G	A	6.057e^-4	0.821	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2994268	3L_2994268_SNP [dm3] 3L_2994268_SNP [dm6]	A	C	6.058e^-4	0.821	UPSTREAM CG2113 INTERGENIC
X	21097717	X_21097717_SNP [dm3] X_21226690_SNP [dm6]	T	G	6.086e^-4	0.821	INTRON CG32521	TF binding site BDTNP1_TFBS_dl
X	8868027	X_8868027_SNP [dm3] X_8973994_SNP [dm6]	G	A	6.098e^-4	0.821	SYNONYMOUS_CODING CG10962 INTRON rdgA & 1 other
2L	15042018	2L_15042018_SNP [dm3] 2L_15042018_SNP [dm6]	T	G	6.101e^-4	0.821	INTRON Su_H_	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19584810	3R_19584810_SNP [dm3] 3R_23759088_SNP [dm6]	G	A	6.113e^-4	0.821	SYNONYMOUS_CODING Plip UPSTREAM Hrd3 DOWNSTREAM CG10219	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_sens
2L	17566804	2L_17566804_SNP [dm3] 2L_17566804_SNP [dm6]	T	G	6.113e^-4	0.821	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18412454	3L_18412454_SNP [dm3] 3L_18419354_SNP [dm6]	G	C	6.115e^-4	0.821	INTERGENIC
2L	1513566	2L_1513566_SNP [dm3] 2L_1513566_SNP [dm6]	T	C	6.125e^-4	0.821	INTERGENIC
X	19016835	X_19016835_DEL [dm3] X_19122802_DEL [dm6]	GACAGC	G	6.128e^-4	0.821	DOWNSTREAM CG15882 INTERGENIC
X	19016877	X_19016877_SNP [dm3] X_19122844_SNP [dm6]	G	A	6.128e^-4	0.821	DOWNSTREAM CG15882 INTERGENIC
3L	1636062	3L_1636062_SNP [dm3] 3L_1636062_SNP [dm6]	A	C	6.133e^-4	0.821	INTRON nSyb	TF binding site mE1_TFBS_HSA
3L	7997862	3L_7997862_SNP [dm3] 3L_8004762_SNP [dm6]	T	C	6.154e^-4	0.821	INTRON nmo
2L	3071272	2L_3071272_SNP [dm3] 2L_3071272_SNP [dm6]	C	T	6.157e^-4	0.821	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	14884907	2L_14884907_SNP [dm3] 2L_14884907_SNP [dm6]	T	C	6.165e^-4	0.821	UPSTREAM CR45302 INTERGENIC
3R	9267865	3R_9267865_SNP [dm3] 3R_13442143_SNP [dm6]	C	A	6.169e^-4	0.821	DOWNSTREAM CR45679 INTERGENIC
3R	13810949	3R_13810949_SNP [dm3] 3R_17985227_SNP [dm6]	A	T	6.175e^-4	0.821	INTRON cpo
3R	13810950	3R_13810950_SNP [dm3] 3R_17985228_SNP [dm6]	T	A	6.175e^-4	0.821	INTRON cpo
3R	13810959	3R_13810959_SNP [dm3] 3R_17985237_SNP [dm6]	C	G	6.175e^-4	0.821	INTRON cpo
3R	13810962	3R_13810962_SNP [dm3] 3R_17985240_SNP [dm6]	A	T	6.175e^-4	0.821	INTRON cpo
3L	731818	3L_731818_SNP [dm3] 3L_731818_SNP [dm6]	T	C	6.177e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sbb
2L	13155299	2L_13155299_SNP [dm3] 2L_13155299_SNP [dm6]	T	C	6.183e^-4	0.821	INTERGENIC
2L	13155361	2L_13155361_SNP [dm3] 2L_13155361_SNP [dm6]	A	G	6.183e^-4	0.821	INTERGENIC
X	20876907	X_20876907_MNP [dm3] X_21005880_MNP [dm6]	GGGG	ACCA	6.191e^-4	0.821	INTERGENIC
X	20876912	X_20876912_INS [dm3] X_21005885_INS [dm6]	G	GG	6.191e^-4	0.821	INTERGENIC
X	20876921	X_20876921_SNP [dm3] X_21005894_SNP [dm6]	G	A	6.191e^-4	0.821	INTERGENIC
X	20876922	X_20876922_SNP [dm3] X_21005895_SNP [dm6]	C	A	6.191e^-4	0.821	INTERGENIC
3L	13543367	3L_13543367_SNP [dm3] 3L_13550267_SNP [dm6]	G	A	6.196e^-4	0.821	INTRON bru-3
X	16102319	X_16102319_SNP [dm3] X_16208286_SNP [dm6]	A	C	6.204e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_sens
3R	7913882	3R_7913882_SNP [dm3] 3R_12088160_SNP [dm6]	T	G	6.207e^-4	0.821	INTRON CG14741
X	18410446	X_18410446_SNP [dm3] X_18516413_SNP [dm6]	A	G	6.213e^-4	0.821	INTRON Aats-his & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_run mE1_TFBS_Trl
X	11592263	X_11592263_SNP [dm3] X_11698230_SNP [dm6]	G	T	6.217e^-4	0.821	INTRON PhKgamma
2L	13730542	2L_13730542_SNP [dm3] 2L_13730542_SNP [dm6]	C	T	6.219e^-4	0.821	INTERGENIC
2R	20134331	2R_20134331_SNP [dm3] 2R_24246808_SNP [dm6]	A	C	6.220e^-4	0.821	INTRON nord
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	6.222e^-4	0.821	INTRON sick
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	6.222e^-4	0.821	INTRON sick
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	6.222e^-4	0.821	INTRON sick
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	6.222e^-4	0.821	INTRON sick
3R	20708147	3R_20708147_SNP [dm3] 3R_24882425_SNP [dm6]	T	C	6.234e^-4	0.821	DOWNSTREAM CG11089 INTRON CG31121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13231908	X_13231908_SNP [dm3] X_13337875_SNP [dm6]	C	G	6.242e^-4	0.821	UPSTREAM CG15747 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
3R	22168802	3R_22168802_SNP [dm3] 3R_26343080_SNP [dm6]	A	T	6.258e^-4	0.821	INTRON CG33970
3R	18023140	3R_18023140_SNP [dm3] 3R_22197418_SNP [dm6]	C	T	6.267e^-4	0.821	INTRON SKIP & 1 other	TF binding site mE1_TFBS_cad
3L	15287230	3L_15287230_SNP [dm3] 3L_15294130_SNP [dm6]	A	C	6.267e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3L	11037674	3L_11037674_SNP [dm3] 3L_11044574_SNP [dm6]	G	T	6.277e^-4	0.821	INTRON CG43693	TF binding site BDTNP1_TFBS_dl
2L	1248559	2L_1248559_SNP [dm3] 2L_1248559_SNP [dm6]	C	G	6.308e^-4	0.821	INTERGENIC
3L	5427258	3L_5427258_SNP [dm3] 3L_5434158_SNP [dm6]	A	G	6.309e^-4	0.821	INTRON CG34391
2L	41882	2L_41882_INS [dm3] 2L_41882_INS [dm6]	C	CC	6.314e^-4	0.821	INTRON Cda5
2L	12607614	2L_12607614_SNP [dm3] 2L_12607614_SNP [dm6]	T	G	6.315e^-4	0.821	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21257312	3R_21257312_SNP [dm3] 3R_25431590_SNP [dm6]	G	A	6.318e^-4	0.821	INTRON Fur1
X	10274045	X_10274045_SNP [dm3] X_10380012_SNP [dm6]	C	T	6.321e^-4	0.821	SYNONYMOUS_CODING CG32681 INTRON CG17841
X	8338531	X_8338531_SNP [dm3] X_8444498_SNP [dm6]	C	A	6.361e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	3392282	2L_3392282_SNP [dm3] 2L_3392282_SNP [dm6]	G	C	6.361e^-4	0.821	INTERGENIC
X	2241679	X_2241679_SNP [dm3] X_2347646_SNP [dm6]	G	A	6.368e^-4	0.821	SYNONYMOUS_CODING ptr	TF binding site mE1_TFBS_sens
X	18684908	X_18684908_SNP [dm3] X_18790875_SNP [dm6]	A	G	6.384e^-4	0.821	SYNONYMOUS_CODING Pk17E UTR_5_PRIME Pk17E UPSTREAM Atg101	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_sens
X	3559838	X_3559838_SNP [dm3] X_3665805_SNP [dm6]	A	T	6.385e^-4	0.821	UTR_3_PRIME AstA-R1
3L	4875072	3L_4875072_SNP [dm3] 3L_4875072_SNP [dm6]	T	C	6.385e^-4	0.821	INTRON CG17150
X	8373844	X_8373844_SNP [dm3] X_8479811_SNP [dm6]	C	T	6.404e^-4	0.821	SYNONYMOUS_CODING Cp36 INTRON CG33223	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	19608076	X_19608076_SNP [dm3] X_19714043_SNP [dm6]	T	C	6.416e^-4	0.821	UPSTREAM meso18E DOWNSTREAM CR44889 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	2655180	2L_2655180_SNP [dm3] 2L_2655180_SNP [dm6]	G	A	6.436e^-4	0.821	SYNONYMOUS_CODING Or23a UPSTREAM Prosbeta4R2
X	20875827	X_20875827_SNP [dm3] X_21004800_SNP [dm6]	G	T	6.437e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA transposable element FlyBase
X	20877106	X_20877106_SNP [dm3] X_21006079_SNP [dm6]	T	G	6.437e^-4	0.821	INTERGENIC	transposable element FlyBase
2L	16774278	2L_16774278_SNP [dm3] 2L_16774278_SNP [dm6]	A	T	6.443e^-4	0.821	INTRON Mhc
2L	16774961	2L_16774961_SNP [dm3] 2L_16774961_SNP [dm6]	C	T	6.443e^-4	0.821	INTRON Mhc
2L	16775532	2L_16775532_SNP [dm3] 2L_16775532_SNP [dm6]	G	C	6.443e^-4	0.821	INTRON Mhc
3R	25732414	3R_25732414_SNP [dm3] 3R_29906692_SNP [dm6]	C	A	6.464e^-4	0.821	DOWNSTREAM CG15515 INTERGENIC
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	6.466e^-4	0.821	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	6.466e^-4	0.821	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2L	15536817	2L_15536817_SNP [dm3] 2L_15536817_SNP [dm6]	T	G	6.469e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	8681414	3L_8681414_SNP [dm3] 3L_8688314_SNP [dm6]	G	T	6.498e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11898191	3R_11898191_SNP [dm3] 3R_16072469_SNP [dm6]	A	T	6.502e^-4	0.821	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	2313545	3L_2313545_SNP [dm3] 3L_2313545_SNP [dm6]	G	T	6.505e^-4	0.821	INTERGENIC
2R	8306142	2R_8306142_SNP [dm3] 2R_12418637_SNP [dm6]	A	G	6.507e^-4	0.821	DOWNSTREAM CG42782 & 1 other INTERGENIC
3L	17096769	3L_17096769_SNP [dm3] 3L_17103669_SNP [dm6]	G	A	6.511e^-4	0.821	INTRON Rbp6	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	10861800	3L_10861800_SNP [dm3] 3L_10868700_SNP [dm6]	T	C	6.512e^-4	0.821	INTRON tna
3L	10861820	3L_10861820_SNP [dm3] 3L_10868720_SNP [dm6]	A	G	6.512e^-4	0.821	INTRON tna
2L	2180229	2L_2180229_SNP [dm3] 2L_2180229_SNP [dm6]	A	T	6.513e^-4	0.821	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16711596	2L_16711596_SNP [dm3] 2L_16711596_SNP [dm6]	C	G	6.517e^-4	0.821	INTRON CG31808	TF binding site mE1_TFBS_inv
3R	14667265	3R_14667265_SNP [dm3] 3R_18841543_SNP [dm6]	G	A	6.520e^-4	0.821	INTRON CG18208
2R	14095626	2R_14095626_SNP [dm3] 2R_18208121_SNP [dm6]	G	C	6.527e^-4	0.821	NON_SYNONYMOUS_CODING CG30114
3R	26540342	3R_26540342_SNP [dm3] 3R_30714620_SNP [dm6]	C	T	6.564e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	11697487	2L_11697487_SNP [dm3] 2L_11697487_SNP [dm6]	C	T	6.564e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_inv
3R	17889586	3R_17889586_SNP [dm3] 3R_22063864_SNP [dm6]	T	A	6.571e^-4	0.821	INTRON how
3L	6397856	3L_6397856_SNP [dm3] 3L_6404756_SNP [dm6]	T	G	6.582e^-4	0.821	INTRON CG42747
3L	13543323	3L_13543323_SNP [dm3] 3L_13550223_SNP [dm6]	C	G	6.615e^-4	0.821	INTRON bru-3
X	11116200	X_11116200_SNP [dm3] X_11222167_SNP [dm6]	T	A	6.621e^-4	0.821	UTR_3_PRIME CG44422 DOWNSTREAM CG44422
3R	15870664	3R_15870664_SNP [dm3] 3R_20044942_SNP [dm6]	C	T	6.627e^-4	0.821	UPSTREAM CG33934 INTRON CG17193 & 2 others
3L	6698009	3L_6698009_SNP [dm3] 3L_6704909_SNP [dm6]	G	A	6.637e^-4	0.821	UTR_5_PRIME CG8519
3L	2015596	3L_2015596_SNP [dm3] 3L_2015596_SNP [dm6]	A	T	6.638e^-4	0.821	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	4765196	X_4765196_DEL [dm3] X_4871163_DEL [dm6]	GCCATGG	G	6.666e^-4	0.821	INTRON CG42594
3L	18367497	3L_18367497_DEL [dm3] 3L_18374397_DEL [dm6]	GCTGCCCGCTGTGAAG...	G	6.686e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	14095618	2R_14095618_SNP [dm3] 2R_18208113_SNP [dm6]	C	T	6.699e^-4	0.821	SYNONYMOUS_CODING CG30114
3R	25298226	3R_25298226_SNP [dm3] 3R_29472504_SNP [dm6]	T	A	6.701e^-4	0.821	INTRON Ptp99A
2L	13155131	2L_13155131_SNP [dm3] 2L_13155131_SNP [dm6]	G	A	6.702e^-4	0.821	INTERGENIC
2L	13155174	2L_13155174_SNP [dm3] 2L_13155174_SNP [dm6]	T	C	6.702e^-4	0.821	INTERGENIC
2L	13676260	2L_13676260_SNP [dm3] 2L_13676260_SNP [dm6]	C	T	6.707e^-4	0.821	DOWNSTREAM CG31814 INTERGENIC
2L	3795149	2L_3795149_SNP [dm3] 2L_3795149_SNP [dm6]	G	A	6.707e^-4	0.821	SYNONYMOUS_CODING CG3921	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	15349975	3L_15349975_SNP [dm3] 3L_15356875_SNP [dm6]	T	A	6.707e^-4	0.821	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	4310772	3L_4310772_SNP [dm3] 3L_4310772_SNP [dm6]	G	T	6.707e^-4	0.821	INTERGENIC
3L	4310837	3L_4310837_SNP [dm3] 3L_4310837_SNP [dm6]	A	T	6.707e^-4	0.821	INTERGENIC

By genomic position
Variant impact
Gene name

se_PhototaxDark_wk1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results