DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.951e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	5.102	0.0239
In_3R_Mo	5.4772	0.0647

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1525 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8579280	X_8579280_SNP [dm3] X_8685247_SNP [dm6]	T	A	5.732e^-7	0.631	UPSTREAM CG11284 INTRON CG11284
3R	26642667	3R_26642667_SNP [dm3] 3R_30816945_SNP [dm6]	T	C	6.912e^-7	0.631	SYNONYMOUS_CODING cindr UTR_5_PRIME cindr UPSTREAM cindr	TF binding site mE1_TFBS_cad
3L	2722466	3L_2722466_SNP [dm3] 3L_2722466_SNP [dm6]	G	A	1.365e^-6	0.679	SYNONYMOUS_CODING Mrtf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	13208837	2L_13208837_SNP [dm3] 2L_13208837_SNP [dm6]	A	T	1.490e^-6	0.679	INTRON Pect
2R	10970132	2R_10970132_SNP [dm3] 2R_15082627_SNP [dm6]	C	T	2.187e^-6	0.798	INTERGENIC
2L	13672961	2L_13672961_SNP [dm3] 2L_13672961_SNP [dm6]	A	G	3.261e^-6	0.927	UTR_3_PRIME CG18507
2R	7549954	2R_7549954_SNP [dm3] 2R_11662449_SNP [dm6]	G	A	3.555e^-6	0.927	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10970102	2R_10970102_SNP [dm3] 2R_15082597_SNP [dm6]	T	A	4.559e^-6	0.93	INTERGENIC
3R	12383392	3R_12383392_SNP [dm3] 3R_16557670_SNP [dm6]	T	C	4.693e^-6	0.93	INTRON CG42342
3R	11905632	3R_11905632_SNP [dm3] 3R_16079910_SNP [dm6]	C	G	5.473e^-6	0.93	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12189771	3L_12189771_SNP [dm3] 3L_12196671_SNP [dm6]	C	T	6.492e^-6	0.93	UPSTREAM CR45746 INTERGENIC
2R	15289833	2R_15289833_SNP [dm3] 2R_19402328_SNP [dm6]	A	G	6.971e^-6	0.93	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	7074650	3L_7074650_SNP [dm3] 3L_7081550_SNP [dm6]	C	A	7.907e^-6	0.93	INTERGENIC
3L	14327289	3L_14327289_SNP [dm3] 3L_14334189_SNP [dm6]	G	A	8.915e^-6	0.93	INTRON fz	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	2390241	3L_2390241_SNP [dm3] 3L_2390241_SNP [dm6]	T	C	9.430e^-6	0.93	UPSTREAM CG32299 DOWNSTREAM CG42787 INTRON CG45186 & 2 others
2L	14915565	2L_14915565_SNP [dm3] 2L_14915565_SNP [dm6]	A	G	1.330e^-5	0.93	INTRON CG42313
2L	12132474	2L_12132474_SNP [dm3] 2L_12132474_SNP [dm6]	G	A	1.459e^-5	0.93	INTRON rho-6
2L	12132477	2L_12132477_SNP [dm3] 2L_12132477_SNP [dm6]	T	C	1.459e^-5	0.93	INTRON rho-6
3R	22886914	3R_22886914_SNP [dm3] 3R_27061192_SNP [dm6]	A	C	1.647e^-5	0.93	INTRON Nep5
3L	2376107	3L_2376107_SNP [dm3] 3L_2376107_SNP [dm6]	T	A	1.667e^-5	0.93	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3L	2375906	3L_2375906_SNP [dm3] 3L_2375906_SNP [dm6]	G	C	1.703e^-5	0.93	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3L	2976771	3L_2976771_SNP [dm3] 3L_2976771_SNP [dm6]	T	G	1.710e^-5	0.93	UPSTREAM CR44530 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15290279	2R_15290279_SNP [dm3] 2R_19402774_SNP [dm6]	T	C	1.719e^-5	0.93	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19675367	2L_19675367_SNP [dm3] 2L_19675367_SNP [dm6]	A	C	1.780e^-5	0.93	INTRON Lar
2L	5125729	2L_5125729_SNP [dm3] 2L_5125729_SNP [dm6]	G	A	1.782e^-5	0.93	INTRON Msp300	TF binding site mE1_TFBS_cad
2L	13672946	2L_13672946_SNP [dm3] 2L_13672946_SNP [dm6]	C	T	1.830e^-5	0.93	UTR_3_PRIME CG18507
2L	13672973	2L_13672973_SNP [dm3] 2L_13672973_SNP [dm6]	G	T	1.830e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13672977	2L_13672977_SNP [dm3] 2L_13672977_SNP [dm6]	A	G	1.830e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13672994	2L_13672994_SNP [dm3] 2L_13672994_SNP [dm6]	T	A	1.830e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13673010	2L_13673010_SNP [dm3] 2L_13673010_SNP [dm6]	A	G	1.830e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13673018	2L_13673018_SNP [dm3] 2L_13673018_SNP [dm6]	C	T	1.830e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
X	8501970	X_8501970_SNP [dm3] X_8607937_SNP [dm6]	T	G	1.873e^-5	0.93	INTERGENIC
2L	9715589	2L_9715589_SNP [dm3] 2L_9715589_SNP [dm6]	C	T	1.952e^-5	0.93	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6293699	3L_6293699_SNP [dm3] 3L_6300599_SNP [dm6]	T	A	2.038e^-5	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	13676838	2L_13676838_SNP [dm3] 2L_13676838_SNP [dm6]	A	G	2.116e^-5	0.93	DOWNSTREAM CG31814 INTERGENIC
3R	11905311	3R_11905311_SNP [dm3] 3R_16079589_SNP [dm6]	A	T	2.145e^-5	0.93	SYNONYMOUS_CODING CG32855 INTRON Mhcl	TF binding site mE1_TFBS_chinmo
2L	5125767	2L_5125767_SNP [dm3] 2L_5125767_SNP [dm6]	C	A	2.152e^-5	0.93	INTRON Msp300	TF binding site mE1_TFBS_cad
3L	6294430	3L_6294430_SNP [dm3] 3L_6301330_SNP [dm6]	T	G	2.199e^-5	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
3L	20201521	3L_20201521_SNP [dm3] 3L_20208421_SNP [dm6]	C	T	2.287e^-5	0.93	SYNONYMOUS_CODING CG6996	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	20213165	3L_20213165_SNP [dm3] 3L_20220065_SNP [dm6]	G	C	2.287e^-5	0.93	NON_SYNONYMOUS_CODING CG6933 INTRON CG6933
3L	9005425	3L_9005425_SNP [dm3] 3L_9012325_SNP [dm6]	G	C	2.287e^-5	0.93	DOWNSTREAM Doc2 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1509277	2L_1509277_SNP [dm3] 2L_1509277_SNP [dm6]	C	A	2.458e^-5	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	7550372	2R_7550372_SNP [dm3] 2R_11662867_SNP [dm6]	G	A	2.463e^-5	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	20001121	3R_20001121_SNP [dm3] 3R_24175399_SNP [dm6]	T	C	2.489e^-5	0.93	INTRON CG13606
2L	19798997	2L_19798997_SNP [dm3] 2L_19798997_SNP [dm6]	T	A	2.498e^-5	0.93	INTRON sick
2L	19799018	2L_19799018_SNP [dm3] 2L_19799018_SNP [dm6]	C	T	2.498e^-5	0.93	INTRON sick
2L	19675350	2L_19675350_SNP [dm3] 2L_19675350_SNP [dm6]	C	T	2.559e^-5	0.93	INTRON Lar
X	20457037	X_20457037_SNP [dm3] X_20586010_SNP [dm6]	G	C	2.564e^-5	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2390019	3L_2390019_SNP [dm3] 3L_2390019_SNP [dm6]	C	T	2.574e^-5	0.93	NON_SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16720898	3R_16720898_SNP [dm3] 3R_20895176_SNP [dm6]	A	G	2.783e^-5	0.93	UTR_3_PRIME CG10830
2L	7081203	2L_7081203_SNP [dm3] 2L_7081203_SNP [dm6]	T	G	2.847e^-5	0.93	INTRON Pvf2
2R	8326530	2R_8326530_SNP [dm3] 2R_12439025_SNP [dm6]	G	T	3.040e^-5	0.93	INTRON Dyb	TF binding site mE1_TFBS_HSA
3L	2682181	3L_2682181_SNP [dm3] 3L_2682181_SNP [dm6]	C	T	3.228e^-5	0.93	INTRON Fife
3L	22317616	3L_22317616_SNP [dm3] 3L_22324516_SNP [dm6]	C	T	3.313e^-5	0.93	INTRON Ten-m	TF binding site mE1_TFBS_sens
3L	22317673	3L_22317673_SNP [dm3] 3L_22324573_SNP [dm6]	G	T	3.313e^-5	0.93	INTRON Ten-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12717328	X_12717328_SNP [dm3] X_12823295_SNP [dm6]	T	C	3.363e^-5	0.93	INTRON Pde9
2L	19720500	2L_19720500_SNP [dm3] 2L_19720500_SNP [dm6]	G	A	3.369e^-5	0.93	INTRON Lar
2L	3810426	2L_3810426_SNP [dm3] 2L_3810426_SNP [dm6]	A	G	3.467e^-5	0.93	UTR_3_PRIME Reph DOWNSTREAM CG3407
2L	19682216	2L_19682216_SNP [dm3] 2L_19682216_SNP [dm6]	C	T	3.476e^-5	0.93	INTRON Lar
2L	2597077	2L_2597077_SNP [dm3] 2L_2597077_SNP [dm6]	T	A	3.539e^-5	0.93	INTERGENIC
X	21097560	X_21097560_SNP [dm3] X_21226533_SNP [dm6]	A	G	3.549e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097566	X_21097566_SNP [dm3] X_21226539_SNP [dm6]	T	A	3.549e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097580	X_21097580_SNP [dm3] X_21226553_SNP [dm6]	G	A	3.549e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	21097628	X_21097628_SNP [dm3] X_21226601_SNP [dm6]	C	G	3.549e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2682188	3L_2682188_SNP [dm3] 3L_2682188_SNP [dm6]	C	G	3.575e^-5	0.93	INTRON Fife
X	12663409	X_12663409_SNP [dm3] X_12769376_SNP [dm6]	G	A	3.606e^-5	0.93	INTRON CG3812	TF binding site BDTNP1_TFBS_twi
2L	20107658	2L_20107658_DEL [dm3] 2L_20107658_DEL [dm6]	GGCTGTGG	G	3.608e^-5	0.93	INTERGENIC	transposable element FlyBase
3R	11898781	3R_11898781_SNP [dm3] 3R_16073059_SNP [dm6]	G	C	3.997e^-5	0.93	NON_SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	2485494	2L_2485494_SNP [dm3] 2L_2485494_SNP [dm6]	G	A	4.031e^-5	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2150320	2L_2150320_SNP [dm3] 2L_2150320_SNP [dm6]	T	A	4.106e^-5	0.93	INTRON CG7261
3L	2671037	3L_2671037_SNP [dm3] 3L_2671037_SNP [dm6]	T	A	4.108e^-5	0.93	UTR_3_PRIME Fife INTRON Fife
2R	15289811	2R_15289811_SNP [dm3] 2R_19402306_SNP [dm6]	G	A	4.132e^-5	0.93	SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	16824780	3R_16824780_SNP [dm3] 3R_20999058_SNP [dm6]	C	T	4.242e^-5	0.93	INTRON Calx
X	21097663	X_21097663_SNP [dm3] X_21226636_SNP [dm6]	C	T	4.349e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl
3R	15148541	3R_15148541_SNP [dm3] 3R_19322819_SNP [dm6]	A	G	4.413e^-5	0.93	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	2597067	2L_2597067_SNP [dm3] 2L_2597067_SNP [dm6]	T	G	4.493e^-5	0.93	INTERGENIC
2R	7286061	2R_7286061_SNP [dm3] 2R_11398556_SNP [dm6]	T	C	4.551e^-5	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	8206373	3L_8206373_SNP [dm3] 3L_8213273_SNP [dm6]	C	T	4.615e^-5	0.93	NON_SYNONYMOUS_CODING CG8006	TF binding site mE1_TFBS_cad
3L	2682633	3L_2682633_SNP [dm3] 3L_2682633_SNP [dm6]	C	T	4.637e^-5	0.93	INTRON Fife
3R	11898155	3R_11898155_SNP [dm3] 3R_16072433_SNP [dm6]	C	T	4.750e^-5	0.93	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13677079	2L_13677079_SNP [dm3] 2L_13677079_SNP [dm6]	C	T	4.825e^-5	0.93	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
3R	12988067	3R_12988067_SNP [dm3] 3R_17162345_SNP [dm6]	T	C	4.865e^-5	0.93	INTRON Mur89F
3R	26642825	3R_26642825_SNP [dm3] 3R_30817103_SNP [dm6]	T	A	4.926e^-5	0.93	NON_SYNONYMOUS_CODING cindr UPSTREAM cindr	TF binding site mE1_TFBS_cad
3R	16720896	3R_16720896_SNP [dm3] 3R_20895174_SNP [dm6]	A	T	4.963e^-5	0.93	UTR_3_PRIME CG10830
3R	12988238	3R_12988238_SNP [dm3] 3R_17162516_SNP [dm6]	C	T	5.124e^-5	0.93	INTRON Mur89F
X	14195994	X_14195994_DEL [dm3] X_14301961_DEL [dm6]	GA	G	5.174e^-5	0.93	INTERGENIC
3R	17546478	3R_17546478_SNP [dm3] 3R_21720756_SNP [dm6]	G	T	5.176e^-5	0.93	UPSTREAM CR44096 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	15148558	3R_15148558_SNP [dm3] 3R_19322836_SNP [dm6]	A	T	5.302e^-5	0.93	INTRON Dl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	16558879	3R_16558879_SNP [dm3] 3R_20733157_SNP [dm6]	T	C	5.308e^-5	0.93	DOWNSTREAM CG31205 INTERGENIC
3L	15236072	3L_15236072_SNP [dm3] 3L_15242972_SNP [dm6]	T	C	5.366e^-5	0.93	DOWNSTREAM Tollo INTERGENIC
3R	24199540	3R_24199540_SNP [dm3] 3R_28373818_SNP [dm6]	T	C	5.372e^-5	0.93	INTERGENIC
2L	16162533	2L_16162533_SNP [dm3] 2L_16162533_SNP [dm6]	G	A	5.567e^-5	0.93	INTERGENIC
2L	2485505	2L_2485505_SNP [dm3] 2L_2485505_SNP [dm6]	A	T	5.619e^-5	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	2577345	3L_2577345_SNP [dm3] 3L_2577345_SNP [dm6]	G	T	5.864e^-5	0.93	INTRON msn	regulatory region REDfly_CRMs
2R	6334835	2R_6334835_SNP [dm3] 2R_10447330_SNP [dm6]	A	G	5.878e^-5	0.93	INTRON Galphao
2L	11045876	2L_11045876_INS [dm3] 2L_11045876_INS [dm6]	T	TT	5.993e^-5	0.93	INTRON Samuel	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18698581	X_18698581_SNP [dm3] X_18804548_SNP [dm6]	G	A	6.063e^-5	0.93	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	4344360	2L_4344360_SNP [dm3] 2L_4344360_SNP [dm6]	A	G	6.096e^-5	0.93	SYNONYMOUS_CODING Atet DOWNSTREAM mir-1005
3L	11372137	3L_11372137_SNP [dm3] 3L_11379037_SNP [dm6]	A	C	6.206e^-5	0.93	INTERGENIC
X	14195993	X_14195993_SNP [dm3] X_14301960_SNP [dm6]	T	C	6.345e^-5	0.93	INTERGENIC
3R	11898927	3R_11898927_SNP [dm3] 3R_16073205_SNP [dm6]	G	C	6.401e^-5	0.93	SYNONYMOUS_CODING Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16004030	3L_16004030_SNP [dm3] 3L_16010930_SNP [dm6]	A	G	6.486e^-5	0.93	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
X	14195990	X_14195990_DEL [dm3] X_14301957_DEL [dm6]	GT	G	6.515e^-5	0.93	INTERGENIC
3R	22974039	3R_22974039_SNP [dm3] 3R_27148317_SNP [dm6]	T	A	6.687e^-5	0.93	INTRON CG6051	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	15893128	2R_15893128_SNP [dm3] 2R_20005623_SNP [dm6]	T	A	6.699e^-5	0.93	UPSTREAM CG16898 INTERGENIC
2R	15289832	2R_15289832_SNP [dm3] 2R_19402327_SNP [dm6]	A	T	6.719e^-5	0.93	NON_SYNONYMOUS_CODING hts DOWNSTREAM CR43430 INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	9712530	2L_9712530_SNP [dm3] 2L_9712530_SNP [dm6]	C	A	6.719e^-5	0.93	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C
2R	8299010	2R_8299010_SNP [dm3] 2R_12411505_SNP [dm6]	C	T	6.849e^-5	0.93	DOWNSTREAM CG33626 INTRON CG33627
3R	24477152	3R_24477152_SNP [dm3] 3R_28651430_SNP [dm6]	G	A	6.915e^-5	0.93	UPSTREAM CG31050 INTERGENIC
3R	24477187	3R_24477187_SNP [dm3] 3R_28651465_SNP [dm6]	A	T	6.915e^-5	0.93	UPSTREAM CG31050 INTERGENIC
3R	24477211	3R_24477211_SNP [dm3] 3R_28651489_SNP [dm6]	T	A	6.915e^-5	0.93	INTERGENIC
3R	24477212	3R_24477212_SNP [dm3] 3R_28651490_SNP [dm6]	C	T	6.915e^-5	0.93	INTERGENIC
2L	15465534	2L_15465534_DEL [dm3] 2L_15465534_DEL [dm6]	AA	A	7.028e^-5	0.93	INTERGENIC
3L	7073975	3L_7073975_DEL [dm3] 3L_7080875_DEL [dm6]	AATTCGTTT	A	7.100e^-5	0.93	INTERGENIC
3L	7073985	3L_7073985_SNP [dm3] 3L_7080885_SNP [dm6]	A	C	7.100e^-5	0.93	INTERGENIC
3L	2376431	3L_2376431_SNP [dm3] 3L_2376431_SNP [dm6]	G	A	7.291e^-5	0.93	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
3L	2376457	3L_2376457_SNP [dm3] 3L_2376457_SNP [dm6]	T	A	7.291e^-5	0.93	UTR_3_PRIME CG9004 DOWNSTREAM CG15877
X	18698397	X_18698397_SNP [dm3] X_18804364_SNP [dm6]	A	G	7.328e^-5	0.93	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_twi
2L	14781229	2L_14781229_SNP [dm3] 2L_14781229_SNP [dm6]	T	C	7.380e^-5	0.93	DOWNSTREAM CR15280 INTERGENIC
3L	7013659	3L_7013659_SNP [dm3] 3L_7020559_SNP [dm6]	T	G	7.427e^-5	0.93	INTRON Mp
3L	2335415	3L_2335415_SNP [dm3] 3L_2335415_SNP [dm6]	T	C	7.554e^-5	0.93	INTRON MsR1
3L	14914887	3L_14914887_SNP [dm3] 3L_14921787_SNP [dm6]	T	G	7.569e^-5	0.93	UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
2L	16861904	2L_16861904_SNP [dm3] 2L_16861904_SNP [dm6]	T	C	7.719e^-5	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
2L	16861930	2L_16861930_SNP [dm3] 2L_16861930_SNP [dm6]	C	T	7.719e^-5	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
2L	16861978	2L_16861978_SNP [dm3] 2L_16861978_SNP [dm6]	C	T	7.719e^-5	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	16861985	2L_16861985_SNP [dm3] 2L_16861985_SNP [dm6]	G	A	7.719e^-5	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	12132543	2L_12132543_SNP [dm3] 2L_12132543_SNP [dm6]	C	T	7.769e^-5	0.93	INTRON rho-6
2L	13673042	2L_13673042_SNP [dm3] 2L_13673042_SNP [dm6]	T	G	7.908e^-5	0.93	DOWNSTREAM CG18507 INTERGENIC
X	21096826	X_21096826_SNP [dm3] X_21225799_SNP [dm6]	T	G	7.965e^-5	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12892662	3L_12892662_SNP [dm3] 3L_12899562_SNP [dm6]	C	T	7.969e^-5	0.93	INTERGENIC
3L	12895345	3L_12895345_SNP [dm3] 3L_12902245_SNP [dm6]	C	A	7.969e^-5	0.93	NON_SYNONYMOUS_CODING CG12520 DOWNSTREAM CG32117
3L	12897617	3L_12897617_SNP [dm3] 3L_12904517_SNP [dm6]	A	G	7.969e^-5	0.93	UPSTREAM CG32117 INTERGENIC
3L	12900602	3L_12900602_SNP [dm3] 3L_12907502_SNP [dm6]	T	C	7.969e^-5	0.93	INTERGENIC
2R	16061866	2R_16061866_SNP [dm3] 2R_20174361_SNP [dm6]	T	A	8.005e^-5	0.93	INTERGENIC
2L	6026974	2L_6026974_SNP [dm3] 2L_6026974_SNP [dm6]	T	A	8.104e^-5	0.93	INTRON CG9109
2L	5113111	2L_5113111_SNP [dm3] 2L_5113111_SNP [dm6]	T	C	8.299e^-5	0.93	INTRON Msp300	TF binding site BDTNP1_TFBS_twi
3L	8638343	3L_8638343_SNP [dm3] 3L_8645243_SNP [dm6]	G	A	8.307e^-5	0.93	NON_SYNONYMOUS_CODING CG13305 SYNONYMOUS_CODING CG13305
2R	18914053	2R_18914053_SNP [dm3] 2R_23026530_SNP [dm6]	C	T	8.416e^-5	0.93	INTRON twi & 1 other
3R	17043312	3R_17043312_SNP [dm3] 3R_21217590_SNP [dm6]	G	T	8.449e^-5	0.93	SYNONYMOUS_CODING CG3353 DOWNSTREAM CR43975
2L	19802424	2L_19802424_SNP [dm3] 2L_19802424_SNP [dm6]	A	T	8.463e^-5	0.93	INTRON sick
2L	19802428	2L_19802428_SNP [dm3] 2L_19802428_SNP [dm6]	A	G	8.463e^-5	0.93	INTRON sick
2L	19802446	2L_19802446_SNP [dm3] 2L_19802446_SNP [dm6]	A	G	8.463e^-5	0.93	INTRON sick
2L	19802454	2L_19802454_SNP [dm3] 2L_19802454_SNP [dm6]	G	T	8.463e^-5	0.93	INTRON sick
3R	18033332	3R_18033332_SNP [dm3] 3R_22207610_SNP [dm6]	C	T	8.534e^-5	0.93	INTRON SKIP & 1 other
2L	19794789	2L_19794789_SNP [dm3] 2L_19794789_SNP [dm6]	T	A	8.651e^-5	0.93	SYNONYMOUS_CODING fs_2_ltoPP43	TF binding site BDTNP1_TFBS_dl
3R	23499589	3R_23499589_SNP [dm3] 3R_27673867_SNP [dm6]	C	A	8.657e^-5	0.93	SPLICE_SITE_REGION unc80 INTRON unc80	TF binding site mE1_TFBS_chinmo
3L	12299202	3L_12299202_SNP [dm3] 3L_12306102_SNP [dm6]	A	C	8.685e^-5	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	22364853	3L_22364853_SNP [dm3] 3L_22371753_SNP [dm6]	C	A	8.952e^-5	0.93	INTRON Ten-m	TF binding site mE1_TFBS_inv
3R	17199515	3R_17199515_SNP [dm3] 3R_21373793_SNP [dm6]	A	C	9.115e^-5	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	17199533	3R_17199533_SNP [dm3] 3R_21373811_SNP [dm6]	T	A	9.115e^-5	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
3R	17200235	3R_17200235_SNP [dm3] 3R_21374513_SNP [dm6]	T	C	9.115e^-5	0.93	INTRON mod_mdg4_	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3R	16321353	3R_16321353_SNP [dm3] 3R_20495631_SNP [dm6]	A	C	9.168e^-5	0.93	INTERGENIC
3R	20374714	3R_20374714_SNP [dm3] 3R_24548992_SNP [dm6]	A	C	9.260e^-5	0.93	UPSTREAM Esyt2 INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19803221	2L_19803221_SNP [dm3] 2L_19803221_SNP [dm6]	G	A	9.320e^-5	0.93	INTRON sick
2L	4679910	2L_4679910_SNP [dm3] 2L_4679910_SNP [dm6]	A	C	9.512e^-5	0.93	INTERGENIC
2L	4092822	2L_4092822_SNP [dm3] 2L_4092822_SNP [dm6]	A	C	9.537e^-5	0.93	INTRON ed
3L	11026809	3L_11026809_SNP [dm3] 3L_11033709_SNP [dm6]	C	T	9.683e^-5	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
3L	2376621	3L_2376621_SNP [dm3] 3L_2376621_SNP [dm6]	C	T	9.706e^-5	0.93	NON_SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
3L	2376652	3L_2376652_SNP [dm3] 3L_2376652_SNP [dm6]	C	T	9.800e^-5	0.93	SYNONYMOUS_CODING CG15877 DOWNSTREAM CG9004
3L	4463680	3L_4463680_SNP [dm3] 3L_4463680_SNP [dm6]	A	G	9.911e^-5	0.93	INTRON CG15024
2L	13677147	2L_13677147_SNP [dm3] 2L_13677147_SNP [dm6]	G	T	9.948e^-5	0.93	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
X	19666078	X_19666078_SNP [dm3] X_19772045_SNP [dm6]	C	A	1.002e^-4	0.93	INTRON vfl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	19136587	3R_19136587_SNP [dm3] 3R_23310865_SNP [dm6]	A	T	1.018e^-4	0.93	INTRON pnt
3L	22293981	3L_22293981_SNP [dm3] 3L_22300881_SNP [dm6]	G	T	1.019e^-4	0.93	SYNONYMOUS_CODING Ten-m	TF binding site mE1_TFBS_cad
2L	16861973	2L_16861973_INS [dm3] 2L_16861973_INS [dm6]	A	AGGAATCC	1.026e^-4	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	9803438	X_9803438_SNP [dm3] X_9909405_SNP [dm6]	G	A	1.027e^-4	0.93	UTR_3_PRIME CG1986
3R	17199984	3R_17199984_SNP [dm3] 3R_21374262_SNP [dm6]	T	A	1.052e^-4	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	2711106	3L_2711106_SNP [dm3] 3L_2711106_SNP [dm6]	G	A	1.053e^-4	0.93	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
4	719169	4_719169_SNP [dm3] 4_698543_SNP [dm6]	C	T	1.070e^-4	0.93	INTRON ey
2L	19802421	2L_19802421_SNP [dm3] 2L_19802421_SNP [dm6]	A	C	1.070e^-4	0.93	INTRON sick
2L	4732950	2L_4732950_SNP [dm3] 2L_4732950_SNP [dm6]	G	A	1.075e^-4	0.93	SYNONYMOUS_CODING CG15631
2R	12109322	2R_12109322_SNP [dm3] 2R_16221817_SNP [dm6]	T	C	1.089e^-4	0.93	UPSTREAM mrj DOWNSTREAM CG7798 EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	6809472	3L_6809472_SNP [dm3] 3L_6816372_SNP [dm6]	C	A	1.090e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_inv
2R	15889270	2R_15889270_SNP [dm3] 2R_20001765_SNP [dm6]	A	G	1.107e^-4	0.93	DOWNSTREAM tRNA:CR33538 INTERGENIC	TF binding site mE1_TFBS_cad
3L	12894180	3L_12894180_SNP [dm3] 3L_12901080_SNP [dm6]	A	T	1.111e^-4	0.93	DOWNSTREAM CG12520 INTERGENIC
3L	4463689	3L_4463689_SNP [dm3] 3L_4463689_SNP [dm6]	G	A	1.120e^-4	0.93	INTRON CG15024
2L	14781212	2L_14781212_SNP [dm3] 2L_14781212_SNP [dm6]	T	C	1.136e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781216	2L_14781216_SNP [dm3] 2L_14781216_SNP [dm6]	A	T	1.136e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781217	2L_14781217_SNP [dm3] 2L_14781217_SNP [dm6]	T	G	1.136e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781220	2L_14781220_MNP [dm3] 2L_14781220_MNP [dm6]	GCA	CAT	1.136e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
3R	17199702	3R_17199702_INS [dm3] 3R_21373980_INS [dm6]	T	TCTT	1.143e^-4	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	21275653	3R_21275653_SNP [dm3] 3R_25449931_SNP [dm6]	A	T	1.143e^-4	0.93	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13673116	2L_13673116_SNP [dm3] 2L_13673116_SNP [dm6]	T	A	1.149e^-4	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13673126	2L_13673126_SNP [dm3] 2L_13673126_SNP [dm6]	A	T	1.149e^-4	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13673129	2L_13673129_SNP [dm3] 2L_13673129_SNP [dm6]	A	G	1.149e^-4	0.93	DOWNSTREAM CG18507 INTERGENIC
2L	13673135	2L_13673135_SNP [dm3] 2L_13673135_SNP [dm6]	T	C	1.149e^-4	0.93	DOWNSTREAM CG18507 INTERGENIC
3L	11182405	3L_11182405_SNP [dm3] 3L_11189305_SNP [dm6]	C	A	1.160e^-4	0.93	INTRON GlcAT-P	TF binding site BDTNP1_TFBS_twi
2R	5364580	2R_5364580_SNP [dm3] 2R_9477075_SNP [dm6]	C	G	1.161e^-4	0.93	SYNONYMOUS_CODING Camta	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	4081976	3R_4081976_SNP [dm3] 3R_8256254_SNP [dm6]	T	C	1.169e^-4	0.93	INTRON mtg	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	4082959	3R_4082959_SNP [dm3] 3R_8257237_SNP [dm6]	C	G	1.186e^-4	0.93	INTRON mtg
X	14610624	X_14610624_SNP [dm3] X_14716591_SNP [dm6]	T	G	1.189e^-4	0.93	INTRON NetB
2L	1457369	2L_1457369_SNP [dm3] 2L_1457369_SNP [dm6]	G	C	1.194e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	2485508	2L_2485508_SNP [dm3] 2L_2485508_SNP [dm6]	C	G	1.197e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	974163	2L_974163_SNP [dm3] 2L_974163_SNP [dm6]	A	G	1.200e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
X	9803405	X_9803405_SNP [dm3] X_9909372_SNP [dm6]	C	T	1.201e^-4	0.93	UTR_3_PRIME CG1986 DOWNSTREAM CG1986
3R	20662103	3R_20662103_SNP [dm3] 3R_24836381_SNP [dm6]	A	G	1.202e^-4	0.93	UPSTREAM sosie DOWNSTREAM CR45216 INTRON sosie
3L	2335423	3L_2335423_SNP [dm3] 3L_2335423_SNP [dm6]	A	T	1.205e^-4	0.93	INTRON MsR1
3R	18531403	3R_18531403_SNP [dm3] 3R_22705681_SNP [dm6]	G	T	1.210e^-4	0.93	NON_SYNONYMOUS_CODING CG13842
2R	15390051	2R_15390051_SNP [dm3] 2R_19502546_SNP [dm6]	A	G	1.219e^-4	0.93	UPSTREAM CG11007 INTERGENIC
2R	19207046	2R_19207046_SNP [dm3] 2R_23319523_SNP [dm6]	C	T	1.225e^-4	0.93	UPSTREAM CG30412 INTERGENIC
2R	14185294	2R_14185294_SNP [dm3] 2R_18297789_SNP [dm6]	T	A	1.235e^-4	0.93	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
X	19879055	X_19879055_SNP [dm3] X_19985022_SNP [dm6]	G	A	1.242e^-4	0.93	INTERGENIC
3R	19726194	3R_19726194_SNP [dm3] 3R_23900472_SNP [dm6]	A	G	1.244e^-4	0.93	INTRON sba	TF binding site mE1_TFBS_chinmo
3R	12988576	3R_12988576_SNP [dm3] 3R_17162854_SNP [dm6]	A	G	1.247e^-4	0.93	INTRON Mur89F
X	11216518	X_11216518_SNP [dm3] X_11322485_SNP [dm6]	C	G	1.248e^-4	0.93	UPSTREAM sisA INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	3216671	X_3216671_SNP [dm3] X_3322638_SNP [dm6]	C	G	1.251e^-4	0.93	INTRON CR44886 & 1 other
3R	17199493	3R_17199493_SNP [dm3] 3R_21373771_SNP [dm6]	A	G	1.252e^-4	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2R	15288448	2R_15288448_SNP [dm3] 2R_19400943_SNP [dm6]	C	T	1.252e^-4	0.93	SYNONYMOUS_CODING hts DOWNSTREAM hts INTRON hts EXON CR43430
2L	14780586	2L_14780586_SNP [dm3] 2L_14780586_SNP [dm6]	T	A	1.269e^-4	0.93	INTERGENIC
2L	14780588	2L_14780588_SNP [dm3] 2L_14780588_SNP [dm6]	A	G	1.269e^-4	0.93	INTERGENIC
2L	14780615	2L_14780615_SNP [dm3] 2L_14780615_SNP [dm6]	T	C	1.269e^-4	0.93	INTERGENIC
2L	14781166	2L_14781166_SNP [dm3] 2L_14781166_SNP [dm6]	T	G	1.269e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781175	2L_14781175_SNP [dm3] 2L_14781175_SNP [dm6]	T	A	1.269e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781206	2L_14781206_SNP [dm3] 2L_14781206_SNP [dm6]	T	C	1.269e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781227	2L_14781227_SNP [dm3] 2L_14781227_SNP [dm6]	T	A	1.269e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	14781231	2L_14781231_INS [dm3] 2L_14781231_INS [dm6]	A	AT	1.269e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2L	3071272	2L_3071272_SNP [dm3] 2L_3071272_SNP [dm6]	C	T	1.270e^-4	0.93	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21284183	3R_21284183_SNP [dm3] 3R_25458461_SNP [dm6]	T	C	1.285e^-4	0.93	INTRON Fur1
3L	7074782	3L_7074782_SNP [dm3] 3L_7081682_SNP [dm6]	A	G	1.299e^-4	0.93	INTERGENIC
2R	15889205	2R_15889205_SNP [dm3] 2R_20001700_SNP [dm6]	G	A	1.314e^-4	0.93	DOWNSTREAM tRNA:CR33538 INTERGENIC	TF binding site mE1_TFBS_cad
2R	15889221	2R_15889221_SNP [dm3] 2R_20001716_SNP [dm6]	T	A	1.314e^-4	0.93	DOWNSTREAM tRNA:CR33538 INTERGENIC	TF binding site mE1_TFBS_cad
2L	11138438	2L_11138438_SNP [dm3] 2L_11138438_SNP [dm6]	C	T	1.316e^-4	0.93	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
X	19924962	X_19924962_SNP [dm3] X_20030929_SNP [dm6]	C	T	1.318e^-4	0.93	INTRON Dop2R
2L	20037915	2L_20037915_SNP [dm3] 2L_20037915_SNP [dm6]	T	C	1.321e^-4	0.93	INTRON sNPF
3R	22817673	3R_22817673_SNP [dm3] 3R_26991951_SNP [dm6]	T	C	1.339e^-4	0.93	INTERGENIC
2L	14781225	2L_14781225_SNP [dm3] 2L_14781225_SNP [dm6]	A	T	1.341e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
3L	15765383	3L_15765383_SNP [dm3] 3L_15772283_SNP [dm6]	G	A	1.344e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9060805	3L_9060805_SNP [dm3] 3L_9067705_SNP [dm6]	T	C	1.356e^-4	0.93	UTR_3_PRIME CG4911
3L	22369102	3L_22369102_SNP [dm3] 3L_22376002_SNP [dm6]	T	C	1.358e^-4	0.93	INTRON Ten-m
3L	1824832	3L_1824832_SNP [dm3] 3L_1824832_SNP [dm6]	C	T	1.409e^-4	0.93	INTRON Cpr62Ba
2R	8291205	2R_8291205_SNP [dm3] 2R_12403700_SNP [dm6]	C	T	1.420e^-4	0.93	INTRON Cpr49Ae	TF binding site BDTNP1_TFBS_ftz BDTNP1_TFBS_twi
X	9602084	X_9602084_SNP [dm3] X_9708051_SNP [dm6]	T	G	1.438e^-4	0.93	INTERGENIC
2R	7549194	2R_7549194_SNP [dm3] 2R_11661689_SNP [dm6]	C	T	1.444e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7549204	2R_7549204_SNP [dm3] 2R_11661699_SNP [dm6]	C	A	1.444e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7549205	2R_7549205_SNP [dm3] 2R_11661700_SNP [dm6]	G	T	1.444e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7549236	2R_7549236_SNP [dm3] 2R_11661731_SNP [dm6]	C	G	1.444e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	7549237	2R_7549237_SNP [dm3] 2R_11661732_SNP [dm6]	C	A	1.444e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	14781240	2L_14781240_SNP [dm3] 2L_14781240_SNP [dm6]	G	T	1.453e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
2R	5300112	2R_5300112_SNP [dm3] 2R_9412607_SNP [dm6]	T	C	1.484e^-4	0.93	INTRON wun	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	19370476	3R_19370476_SNP [dm3] 3R_23544754_SNP [dm6]	T	C	1.485e^-4	0.93	INTERGENIC
3R	12963589	3R_12963589_SNP [dm3] 3R_17137867_SNP [dm6]	A	C	1.493e^-4	0.93	UPSTREAM CG5255 DOWNSTREAM CG5246 INTERGENIC
2R	8908560	2R_8908560_SNP [dm3] 2R_13021055_SNP [dm6]	C	T	1.494e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6129427	2L_6129427_SNP [dm3] 2L_6129427_SNP [dm6]	G	T	1.511e^-4	0.93	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2673135	3L_2673135_SNP [dm3] 3L_2673135_SNP [dm6]	G	C	1.521e^-4	0.93	SYNONYMOUS_CODING Fife
2L	5878602	2L_5878602_SNP [dm3] 2L_5878602_SNP [dm6]	G	A	1.523e^-4	0.93	INTRON rau	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6211051	3L_6211051_INS [dm3] 3L_6217951_INS [dm6]	T	TT	1.524e^-4	0.93	UTR_5_PRIME LanA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	14676009	2L_14676009_SNP [dm3] 2L_14676009_SNP [dm6]	T	G	1.524e^-4	0.93	INTRON osp
3R	24604142	3R_24604142_SNP [dm3] 3R_28778420_SNP [dm6]	G	T	1.537e^-4	0.93	DOWNSTREAM CR44952 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	2306187	X_2306187_SNP [dm3] X_2412154_SNP [dm6]	G	A	1.540e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	13296788	2L_13296788_SNP [dm3] 2L_13296788_SNP [dm6]	G	T	1.542e^-4	0.93	INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3R	20761418	3R_20761418_SNP [dm3] 3R_24935696_SNP [dm6]	G	A	1.569e^-4	0.93	SYNONYMOUS_CODING Osbp DOWNSTREAM CG11771	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	2485484	2L_2485484_SNP [dm3] 2L_2485484_SNP [dm6]	A	T	1.570e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2485487	2L_2485487_SNP [dm3] 2L_2485487_SNP [dm6]	C	T	1.570e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	12900672	3L_12900672_SNP [dm3] 3L_12907572_SNP [dm6]	T	A	1.573e^-4	0.93	INTERGENIC
3L	12128391	3L_12128391_SNP [dm3] 3L_12135291_SNP [dm6]	A	G	1.575e^-4	0.93	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	12128469	3L_12128469_SNP [dm3] 3L_12135369_SNP [dm6]	G	C	1.575e^-4	0.93	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	19720598	2L_19720598_SNP [dm3] 2L_19720598_SNP [dm6]	C	G	1.580e^-4	0.93	INTRON Lar
3L	7074850	3L_7074850_SNP [dm3] 3L_7081750_SNP [dm6]	C	A	1.584e^-4	0.93	INTERGENIC
3R	7886416	3R_7886416_SNP [dm3] 3R_12060694_SNP [dm6]	C	T	1.584e^-4	0.93	DOWNSTREAM CG14740 INTERGENIC
2R	12521427	2R_12521427_SNP [dm3] 2R_16633922_SNP [dm6]	C	T	1.592e^-4	0.93	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	7013663	3L_7013663_SNP [dm3] 3L_7020563_SNP [dm6]	A	T	1.597e^-4	0.93	INTRON Mp
3L	7013665	3L_7013665_SNP [dm3] 3L_7020565_SNP [dm6]	A	G	1.597e^-4	0.93	INTRON Mp
3L	11026831	3L_11026831_SNP [dm3] 3L_11033731_SNP [dm6]	T	C	1.655e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
2R	17946729	2R_17946729_SNP [dm3] 2R_22059224_SNP [dm6]	A	G	1.674e^-4	0.93	SYNONYMOUS_CODING CG13501	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	2373059	X_2373059_DEL [dm3] X_2479026_DEL [dm6]	TT	T	1.677e^-4	0.93	UTR_3_PRIME trol DOWNSTREAM trol INTRON trol
2R	15289081	2R_15289081_SNP [dm3] 2R_19401576_SNP [dm6]	A	G	1.679e^-4	0.93	DOWNSTREAM hts & 1 other INTRON hts
2R	15289194	2R_15289194_SNP [dm3] 2R_19401689_SNP [dm6]	G	A	1.679e^-4	0.93	DOWNSTREAM hts & 1 other INTRON hts
2R	15289251	2R_15289251_SNP [dm3] 2R_19401746_SNP [dm6]	A	T	1.679e^-4	0.93	UTR_3_PRIME hts DOWNSTREAM CR43430 INTRON hts
2L	10986123	2L_10986123_SNP [dm3] 2L_10986123_SNP [dm6]	C	T	1.681e^-4	0.93	SYNONYMOUS_CODING piwi	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14780308	2L_14780308_SNP [dm3] 2L_14780308_SNP [dm6]	G	A	1.695e^-4	0.93	INTERGENIC
2L	14780418	2L_14780418_SNP [dm3] 2L_14780418_SNP [dm6]	A	T	1.702e^-4	0.93	INTERGENIC
3L	12183047	3L_12183047_SNP [dm3] 3L_12189947_SNP [dm6]	G	T	1.718e^-4	0.93	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
X	2604944	X_2604944_SNP [dm3] X_2710911_SNP [dm6]	T	C	1.718e^-4	0.93	DOWNSTREAM CG2685 INTRON CG2681	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4001599	2L_4001599_SNP [dm3] 2L_4001599_SNP [dm6]	A	C	1.721e^-4	0.93	DOWNSTREAM CG43797 EXON CR45344	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	13195623	3R_13195623_SNP [dm3] 3R_17369901_SNP [dm6]	G	T	1.728e^-4	0.93	INTERGENIC
3R	17147618	3R_17147618_SNP [dm3] 3R_21321896_SNP [dm6]	G	A	1.735e^-4	0.93	SYNONYMOUS_CODING CG16791	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	13158113	2R_13158113_SNP [dm3] 2R_17270608_SNP [dm6]	C	T	1.747e^-4	0.93	INTRON mbl
3L	12705243	3L_12705243_SNP [dm3] 3L_12712143_SNP [dm6]	A	T	1.759e^-4	0.93	INTERGENIC
3L	12127414	3L_12127414_SNP [dm3] 3L_12134314_SNP [dm6]	T	A	1.766e^-4	0.93	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3R	19726177	3R_19726177_INS [dm3] 3R_23900455_INS [dm6]	C	TG	1.785e^-4	0.93	INTRON sba	TF binding site mE1_TFBS_chinmo
X	21099104	X_21099104_SNP [dm3] X_21228077_SNP [dm6]	A	C	1.794e^-4	0.93	INTRON CG32521
X	21099107	X_21099107_SNP [dm3] X_21228080_SNP [dm6]	G	T	1.794e^-4	0.93	INTRON CG32521
3R	4066014	3R_4066014_SNP [dm3] 3R_8240292_SNP [dm6]	T	C	1.794e^-4	0.93	DOWNSTREAM CG9636 INTRON Ada2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4066015	3R_4066015_SNP [dm3] 3R_8240293_SNP [dm6]	A	G	1.794e^-4	0.93	DOWNSTREAM CG9636 INTRON Ada2b	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11635765	3L_11635765_SNP [dm3] 3L_11642665_SNP [dm6]	G	C	1.815e^-4	0.93	UTR_3_PRIME CG32091 DOWNSTREAM CG6071
2L	12588572	2L_12588572_SNP [dm3] 2L_12588572_SNP [dm6]	A	G	1.825e^-4	0.93	INTRON nub
3R	12987915	3R_12987915_SNP [dm3] 3R_17162193_SNP [dm6]	G	A	1.829e^-4	0.93	INTRON Mur89F
3R	4059865	3R_4059865_SNP [dm3] 3R_8234143_SNP [dm6]	G	T	1.837e^-4	0.93	UPSTREAM CR45549 INTRON DNApol-iota	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	4066256	3R_4066256_SNP [dm3] 3R_8240534_SNP [dm6]	T	G	1.837e^-4	0.93	UPSTREAM Ada2b DOWNSTREAM CG9636 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	13697944	3R_13697944_SNP [dm3] 3R_17872222_SNP [dm6]	G	T	1.851e^-4	0.93	UTR_3_PRIME tinc DOWNSTREAM Rim
3R	16381599	3R_16381599_INS [dm3] 3R_20555877_INS [dm6]	A	AA	1.862e^-4	0.93	INTRON att-ORFA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3L	11370995	3L_11370995_SNP [dm3] 3L_11377895_SNP [dm6]	C	A	1.863e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12720999	2L_12720999_SNP [dm3] 2L_12720999_SNP [dm6]	A	G	1.874e^-4	0.93	INTRON CG5792 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3R	24549730	3R_24549730_SNP [dm3] 3R_28724008_SNP [dm6]	C	A	1.891e^-4	0.93	NON_SYNONYMOUS_CODING htt
2R	19694795	2R_19694795_SNP [dm3] 2R_23807272_SNP [dm6]	G	A	1.891e^-4	0.93	SYNONYMOUS_CODING Ssrp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	14781202	2L_14781202_SNP [dm3] 2L_14781202_SNP [dm6]	G	A	1.900e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
X	16087686	X_16087686_SNP [dm3] X_16193653_SNP [dm6]	A	G	1.912e^-4	0.93	INTERGENIC
3R	20375181	3R_20375181_SNP [dm3] 3R_24549459_SNP [dm6]	G	T	1.915e^-4	0.93	INTRON Esyt2	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	2052418	3L_2052418_SNP [dm3] 3L_2052418_SNP [dm6]	G	A	1.918e^-4	0.93	INTRON sls
2L	4933816	2L_4933816_SNP [dm3] 2L_4933816_SNP [dm6]	C	T	1.923e^-4	0.93	SYNONYMOUS_CODING hoe2
2L	4933822	2L_4933822_SNP [dm3] 2L_4933822_SNP [dm6]	C	A	1.923e^-4	0.93	SYNONYMOUS_CODING hoe2
3L	9904192	3L_9904192_SNP [dm3] 3L_9911092_SNP [dm6]	G	T	1.930e^-4	0.93	INTRON CG34356
2L	2485514	2L_2485514_SNP [dm3] 2L_2485514_SNP [dm6]	A	C	1.938e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	5215053	3L_5215053_SNP [dm3] 3L_5221953_SNP [dm6]	A	T	1.941e^-4	0.93	INTRON shep
2L	17536354	2L_17536354_SNP [dm3] 2L_17536354_SNP [dm6]	G	A	1.943e^-4	0.93	INTERGENIC
3L	606509	3L_606509_SNP [dm3] 3L_606509_SNP [dm6]	A	G	1.944e^-4	0.93	UTR_5_PRIME Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	5727733	3L_5727733_SNP [dm3] 3L_5734633_SNP [dm6]	A	G	1.958e^-4	0.93	INTRON sif
2R	15889807	2R_15889807_SNP [dm3] 2R_20002302_SNP [dm6]	G	A	1.967e^-4	0.93	INTERGENIC
3R	18531462	3R_18531462_SNP [dm3] 3R_22705740_SNP [dm6]	C	T	1.987e^-4	0.93	SYNONYMOUS_CODING CG13842
2R	7549768	2R_7549768_SNP [dm3] 2R_11662263_SNP [dm6]	A	G	1.990e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	5435205	3L_5435205_SNP [dm3] 3L_5442105_SNP [dm6]	C	A	1.996e^-4	0.93	UTR_3_PRIME CG34391
X	12805896	X_12805896_SNP [dm3] X_12911863_SNP [dm6]	C	T	2.011e^-4	0.93	UTR_3_PRIME CG4645 UPSTREAM CR45625
2R	19178550	2R_19178550_SNP [dm3] 2R_23291027_SNP [dm6]	T	C	2.012e^-4	0.93	EXON CR44783
2L	13342960	2L_13342960_SNP [dm3] 2L_13342960_SNP [dm6]	T	C	2.015e^-4	0.93	INTERGENIC
2R	8523868	2R_8523868_INS [dm3] 2R_12636363_INS [dm6]	A	AAA	2.064e^-4	0.93	UPSTREAM Iswi & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	12988016	3R_12988016_SNP [dm3] 3R_17162294_SNP [dm6]	T	C	2.068e^-4	0.93	INTRON Mur89F
3L	12874338	3L_12874338_SNP [dm3] 3L_12881238_SNP [dm6]	C	T	2.069e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12132356	2L_12132356_SNP [dm3] 2L_12132356_SNP [dm6]	A	G	2.070e^-4	0.93	INTRON rho-6
2L	4933836	2L_4933836_SNP [dm3] 2L_4933836_SNP [dm6]	G	A	2.076e^-4	0.93	SYNONYMOUS_CODING hoe2
2R	11784221	2R_11784221_INS [dm3] 2R_15896716_INS [dm6]	T	TT	2.087e^-4	0.93	UPSTREAM CG33463 INTRON sli	TF binding site mE1_TFBS_cad
3R	23134501	3R_23134501_SNP [dm3] 3R_27308779_SNP [dm6]	A	G	2.093e^-4	0.93	SYNONYMOUS_CODING CG3339
3L	12865576	3L_12865576_SNP [dm3] 3L_12872476_SNP [dm6]	A	G	2.100e^-4	0.93	INTERGENIC
3R	24444621	3R_24444621_SNP [dm3] 3R_28618899_SNP [dm6]	A	G	2.114e^-4	0.93	INTRON CG10011
X	14084966	X_14084966_SNP [dm3] X_14190933_SNP [dm6]	T	C	2.118e^-4	0.93	DOWNSTREAM CG13403 & 1 other INTERGENIC
2R	15834683	2R_15834683_SNP [dm3] 2R_19947178_SNP [dm6]	A	G	2.125e^-4	0.93	UPSTREAM CG30447 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	11238297	3R_11238297_SNP [dm3] 3R_15412575_SNP [dm6]	G	A	2.128e^-4	0.93	SPLICE_SITE_REGION Atx2 INTRON Atx2	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
X	18924328	X_18924328_SNP [dm3] X_19030295_SNP [dm6]	A	G	2.129e^-4	0.93	INTERGENIC
3R	21677317	3R_21677317_SNP [dm3] 3R_25851595_SNP [dm6]	C	A	2.135e^-4	0.93	UPSTREAM CG5886 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	25289906	3R_25289906_SNP [dm3] 3R_29464184_SNP [dm6]	A	G	2.141e^-4	0.93	INTRON Ptp99A	TF binding site mE1_TFBS_cad
2L	14915559	2L_14915559_SNP [dm3] 2L_14915559_SNP [dm6]	T	A	2.151e^-4	0.93	INTRON CG42313
3R	4365663	3R_4365663_SNP [dm3] 3R_8539941_SNP [dm6]	C	T	2.154e^-4	0.93	INTERGENIC
2L	14781187	2L_14781187_SNP [dm3] 2L_14781187_SNP [dm6]	C	A	2.158e^-4	0.93	DOWNSTREAM CR15280 INTERGENIC
3L	2360468	3L_2360468_SNP [dm3] 3L_2360468_SNP [dm6]	T	C	2.160e^-4	0.93	UPSTREAM CG13801 INTERGENIC
2L	12330122	2L_12330122_SNP [dm3] 2L_12330122_SNP [dm6]	C	T	2.178e^-4	0.93	INTERGENIC
3L	12127161	3L_12127161_SNP [dm3] 3L_12134061_SNP [dm6]	T	G	2.197e^-4	0.93	NON_SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534
2R	6638820	2R_6638820_SNP [dm3] 2R_10751315_SNP [dm6]	A	G	2.238e^-4	0.93	INTRON CG33144
2L	14781972	2L_14781972_SNP [dm3] 2L_14781972_SNP [dm6]	G	T	2.241e^-4	0.93	EXON CR15280
2L	15761479	2L_15761479_SNP [dm3] 2L_15761479_SNP [dm6]	A	C	2.258e^-4	0.93	INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	26653896	3R_26653896_SNP [dm3] 3R_30828174_SNP [dm6]	T	A	2.259e^-4	0.93	UTR_5_PRIME CG15544
3R	26653910	3R_26653910_SNP [dm3] 3R_30828188_SNP [dm6]	A	G	2.259e^-4	0.93	UTR_5_PRIME CG15544
3L	9320478	3L_9320478_INS [dm3] 3L_9327378_INS [dm6]	A	ACACTTGGTCAGAGCTTTAA...	2.263e^-4	0.93	INTERGENIC
2L	14146807	2L_14146807_SNP [dm3] 2L_14146807_SNP [dm6]	G	A	2.281e^-4	0.93	INTRON CG17341
2R	19792628	2R_19792628_SNP [dm3] 2R_23905105_SNP [dm6]	G	A	2.283e^-4	0.93	UTR_3_PRIME CG13562 DOWNSTREAM Nap1
X	2705446	X_2705446_SNP [dm3] X_2811413_SNP [dm6]	G	A	2.295e^-4	0.93	DOWNSTREAM CG12498 INTRON kirre
3L	2680702	3L_2680702_SNP [dm3] 3L_2680702_SNP [dm6]	C	T	2.301e^-4	0.93	INTRON Fife
3R	12033172	3R_12033172_SNP [dm3] 3R_16207450_SNP [dm6]	C	T	2.305e^-4	0.93	DOWNSTREAM CR45639 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17221749	3L_17221749_SNP [dm3] 3L_17228649_SNP [dm6]	A	G	2.305e^-4	0.93	INTRON Rbp6
3L	13141746	3L_13141746_SNP [dm3] 3L_13148646_SNP [dm6]	G	T	2.310e^-4	0.93	INTERGENIC
X	18640270	X_18640270_SNP [dm3] X_18746237_SNP [dm6]	A	T	2.320e^-4	0.93	DOWNSTREAM CG12609 INTERGENIC
2R	3091068	2R_3091068_SNP [dm3] 2R_7203563_SNP [dm6]	G	T	2.340e^-4	0.93	INTRON pk
2R	13158126	2R_13158126_SNP [dm3] 2R_17270621_SNP [dm6]	T	C	2.343e^-4	0.93	INTRON mbl
3L	7012953	3L_7012953_SNP [dm3] 3L_7019853_SNP [dm6]	C	T	2.349e^-4	0.93	SYNONYMOUS_CODING Mp INTRON Mp
2R	19647456	2R_19647456_SNP [dm3] 2R_23759933_SNP [dm6]	G	T	2.355e^-4	0.93	INTRON CG9850	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	12900662	3L_12900662_SNP [dm3] 3L_12907562_SNP [dm6]	C	G	2.363e^-4	0.93	INTERGENIC
2L	7250696	2L_7250696_SNP [dm3] 2L_7250696_SNP [dm6]	A	G	2.378e^-4	0.93	UTR_3_PRIME CG13786
3L	17184741	3L_17184741_SNP [dm3] 3L_17191641_SNP [dm6]	T	C	2.401e^-4	0.93	INTRON Rbp6
3L	2658387	3L_2658387_SNP [dm3] 3L_2658387_SNP [dm6]	G	A	2.402e^-4	0.93	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13998690	2L_13998690_SNP [dm3] 2L_13998690_SNP [dm6]	C	A	2.404e^-4	0.93	INTRON rk
2L	17512532	2L_17512532_SNP [dm3] 2L_17512532_SNP [dm6]	T	C	2.416e^-4	0.93	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_chinmo
X	2727566	X_2727566_SNP [dm3] X_2833533_SNP [dm6]	G	A	2.420e^-4	0.93	INTRON kirre
2L	14780666	2L_14780666_SNP [dm3] 2L_14780666_SNP [dm6]	G	T	2.421e^-4	0.93	INTERGENIC
2L	19797389	2L_19797389_SNP [dm3] 2L_19797389_SNP [dm6]	T	C	2.425e^-4	0.93	INTRON sick
2R	7549208	2R_7549208_INS [dm3] 2R_11661703_INS [dm6]	A	ATGTA	2.429e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18328457	3L_18328457_SNP [dm3] 3L_18335357_SNP [dm6]	G	T	2.432e^-4	0.93	INTERGENIC
3L	447616	3L_447616_SNP [dm3] 3L_447616_SNP [dm6]	A	G	2.453e^-4	0.93	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	21352829	3R_21352829_SNP [dm3] 3R_25527107_SNP [dm6]	C	T	2.453e^-4	0.93	INTRON msi
3R	16899088	3R_16899088_SNP [dm3] 3R_21073366_SNP [dm6]	C	T	2.454e^-4	0.93	UPSTREAM dmrt93B & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad
X	16126134	X_16126134_SNP [dm3] X_16232101_SNP [dm6]	G	C	2.460e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	6129560	2L_6129560_SNP [dm3] 2L_6129560_SNP [dm6]	A	G	2.471e^-4	0.93	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25657205	3R_25657205_SNP [dm3] 3R_29831483_SNP [dm6]	G	C	2.475e^-4	0.93	INTRON Atg16
3R	26357970	3R_26357970_SNP [dm3] 3R_30532248_SNP [dm6]	G	T	2.475e^-4	0.93	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	15431828	X_15431828_SNP [dm3] X_15537795_SNP [dm6]	G	T	2.484e^-4	0.93	INTRON Ac13E	TF binding site mE1_TFBS_cad
2L	10984731	2L_10984731_SNP [dm3] 2L_10984731_SNP [dm6]	G	C	2.498e^-4	0.93	INTRON piwi	transposable element FlyBase
3L	2360402	3L_2360402_SNP [dm3] 3L_2360402_SNP [dm6]	A	C	2.507e^-4	0.93	UPSTREAM CG13801 INTERGENIC
3R	15850066	3R_15850066_SNP [dm3] 3R_20024344_SNP [dm6]	T	C	2.514e^-4	0.93	INTRON psidin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
3R	7899243	3R_7899243_SNP [dm3] 3R_12073521_SNP [dm6]	T	C	2.547e^-4	0.93	SYNONYMOUS_CODING CG14741
3R	7962567	3R_7962567_SNP [dm3] 3R_12136845_SNP [dm6]	A	G	2.547e^-4	0.93	INTERGENIC
X	8501997	X_8501997_SNP [dm3] X_8607964_SNP [dm6]	A	G	2.549e^-4	0.93	INTERGENIC
3R	26875687	3R_26875687_SNP [dm3] 3R_31049965_SNP [dm6]	C	T	2.559e^-4	0.93	UTR_5_PRIME Aph-4 INTRON Aph-4
2L	19835356	2L_19835356_SNP [dm3] 2L_19835356_SNP [dm6]	A	T	2.565e^-4	0.93	INTRON sick
2L	19835371	2L_19835371_SNP [dm3] 2L_19835371_SNP [dm6]	T	C	2.565e^-4	0.93	INTRON sick
3R	19540756	3R_19540756_SNP [dm3] 3R_23715034_SNP [dm6]	G	A	2.571e^-4	0.93	INTRON nau
3R	24936840	3R_24936840_SNP [dm3] 3R_29111118_SNP [dm6]	A	C	2.574e^-4	0.93	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4310777	3L_4310777_SNP [dm3] 3L_4310777_SNP [dm6]	C	T	2.579e^-4	0.93	INTERGENIC
3R	19540687	3R_19540687_DEL [dm3] 3R_23714965_DEL [dm6]	CTCTATCTTAAGACTTC...	C	2.589e^-4	0.93	INTRON nau
3L	14559361	3L_14559361_DEL [dm3] 3L_14566261_DEL [dm6]	AAAGC	A	2.590e^-4	0.93	INTERGENIC
3L	14560031	3L_14560031_SNP [dm3] 3L_14566931_SNP [dm6]	G	T	2.590e^-4	0.93	UPSTREAM CG42758 INTERGENIC
3R	14705981	3R_14705981_SNP [dm3] 3R_18880259_SNP [dm6]	A	G	2.599e^-4	0.93	INTERGENIC
3R	10762064	3R_10762064_SNP [dm3] 3R_14936342_SNP [dm6]	A	G	2.614e^-4	0.93	INTERGENIC
3L	6293666	3L_6293666_SNP [dm3] 3L_6300566_SNP [dm6]	T	G	2.615e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	11703228	3R_11703228_SNP [dm3] 3R_15877506_SNP [dm6]	C	A	2.627e^-4	0.93	INTERGENIC
2L	13134839	2L_13134839_SNP [dm3] 2L_13134839_SNP [dm6]	A	G	2.632e^-4	0.93	DOWNSTREAM CG5122 INTERGENIC
3L	2684779	3L_2684779_SNP [dm3] 3L_2684779_SNP [dm6]	T	G	2.637e^-4	0.93	INTRON Fife
2L	17256093	2L_17256093_SNP [dm3] 2L_17256093_SNP [dm6]	A	T	2.637e^-4	0.93	INTRON beat-IIIc
3L	12127603	3L_12127603_SNP [dm3] 3L_12134503_SNP [dm6]	A	G	2.643e^-4	0.93	SYNONYMOUS_CODING CG5645 DOWNSTREAM CG11534	TF binding site mE1_TFBS_cad
3L	9516013	3L_9516013_DEL [dm3] 3L_9522913_DEL [dm6]	GG	G	2.662e^-4	0.93	INTRON CG33700
2L	6027016	2L_6027016_SNP [dm3] 2L_6027016_SNP [dm6]	T	C	2.667e^-4	0.93	INTRON CG9109
2R	15290987	2R_15290987_SNP [dm3] 2R_19403482_SNP [dm6]	G	C	2.683e^-4	0.93	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13998043	2L_13998043_SNP [dm3] 2L_13998043_SNP [dm6]	A	G	2.695e^-4	0.93	INTRON rk
3R	24477204	3R_24477204_SNP [dm3] 3R_28651482_SNP [dm6]	T	A	2.703e^-4	0.93	INTERGENIC
3R	26358105	3R_26358105_SNP [dm3] 3R_30532383_SNP [dm6]	T	G	2.711e^-4	0.93	UPSTREAM tmod & 1 other DOWNSTREAM CR45553 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	2925335	2R_2925335_SNP [dm3] 2R_7037830_SNP [dm6]	T	A	2.716e^-4	0.93	UTR_5_PRIME CG33914 DOWNSTREAM Tsp42Ei
2L	5125765	2L_5125765_SNP [dm3] 2L_5125765_SNP [dm6]	T	A	2.727e^-4	0.93	INTRON Msp300	TF binding site mE1_TFBS_cad
3R	24275403	3R_24275403_SNP [dm3] 3R_28449681_SNP [dm6]	T	A	2.733e^-4	0.93	INTRON beat-VI
2L	19245354	2L_19245354_SNP [dm3] 2L_19245354_SNP [dm6]	T	C	2.752e^-4	0.93	INTERGENIC
2L	16861903	2L_16861903_SNP [dm3] 2L_16861903_SNP [dm6]	T	C	2.776e^-4	0.93	UPSTREAM CG6012 INTRON CR43858	TF binding site BDTNP1_TFBS_twi
2R	15291583	2R_15291583_SNP [dm3] 2R_19404078_SNP [dm6]	C	G	2.796e^-4	0.93	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	20464644	X_20464644_SNP [dm3] X_20593617_SNP [dm6]	A	G	2.805e^-4	0.93	INTRON RunxA
X	2320505	X_2320505_DEL [dm3] X_2426472_DEL [dm6]	TG	T	2.813e^-4	0.93	UPSTREAM CG32797 DOWNSTREAM gt INTERGENIC
3L	5215054	3L_5215054_SNP [dm3] 3L_5221954_SNP [dm6]	C	A	2.819e^-4	0.93	INTRON shep
3R	11911637	3R_11911637_SNP [dm3] 3R_16085915_SNP [dm6]	T	C	2.842e^-4	0.93	SYNONYMOUS_CODING sxe2 INTRON Mhcl	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	12869867	X_12869867_SNP [dm3] X_12975834_SNP [dm6]	C	A	2.851e^-4	0.93	INTRON CG12716	TF binding site mE1_TFBS_inv
3R	22187551	3R_22187551_SNP [dm3] 3R_26361829_SNP [dm6]	A	T	2.876e^-4	0.93	UTR_3_PRIME CG33970
2R	15290558	2R_15290558_SNP [dm3] 2R_19403053_SNP [dm6]	T	C	2.885e^-4	0.93	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12621931	3L_12621931_SNP [dm3] 3L_12628831_SNP [dm6]	A	G	2.892e^-4	0.93	INTRON CR32111
2L	14780296	2L_14780296_SNP [dm3] 2L_14780296_SNP [dm6]	T	C	2.917e^-4	0.93	INTERGENIC
2L	17566804	2L_17566804_SNP [dm3] 2L_17566804_SNP [dm6]	T	G	2.918e^-4	0.93	DOWNSTREAM mir-124 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	6263622	3L_6263622_SNP [dm3] 3L_6270522_SNP [dm6]	A	G	2.921e^-4	0.93	INTERGENIC
2L	17566914	2L_17566914_SNP [dm3] 2L_17566914_SNP [dm6]	G	C	2.933e^-4	0.93	DOWNSTREAM mir-124 INTERGENIC
2R	10373053	2R_10373053_SNP [dm3] 2R_14485548_SNP [dm6]	T	G	2.944e^-4	0.93	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	5185385	3L_5185385_SNP [dm3] 3L_5192285_SNP [dm6]	A	T	2.948e^-4	0.93	INTRON shep
X	3785474	X_3785474_SNP [dm3] X_3891441_SNP [dm6]	T	A	2.960e^-4	0.93	DOWNSTREAM CG15239 & 1 other INTERGENIC
X	10221172	X_10221172_SNP [dm3] X_10327139_SNP [dm6]	T	C	2.962e^-4	0.93	SYNONYMOUS_CODING CG2909	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	16663863	2R_16663863_SNP [dm3] 2R_20776358_SNP [dm6]	G	A	2.966e^-4	0.93	SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
X	16141673	X_16141673_INS [dm3] X_16247640_INS [dm6]	T	TTATCTAATA	2.973e^-4	0.93	INTERGENIC
2R	17306635	2R_17306635_SNP [dm3] 2R_21419130_SNP [dm6]	A	G	2.974e^-4	0.93	INTRON Sdc
3L	9516057	3L_9516057_SNP [dm3] 3L_9522957_SNP [dm6]	C	A	2.977e^-4	0.93	INTRON CG33700
3R	15249274	3R_15249274_SNP [dm3] 3R_19423552_SNP [dm6]	T	C	2.988e^-4	0.93	DOWNSTREAM CG3517 INTRON CG31221
3L	2375627	3L_2375627_SNP [dm3] 3L_2375627_SNP [dm6]	G	A	2.989e^-4	0.93	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3L	2377107	3L_2377107_SNP [dm3] 3L_2377107_SNP [dm6]	G	A	2.989e^-4	0.93	NON_SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA
3L	2378436	3L_2378436_SNP [dm3] 3L_2378436_SNP [dm6]	G	A	2.989e^-4	0.93	UPSTREAM CG15877 & 1 other INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25791708	3R_25791708_SNP [dm3] 3R_29965986_SNP [dm6]	G	A	2.991e^-4	0.93	INTRON TkR99D
3R	12492065	3R_12492065_SNP [dm3] 3R_16666343_SNP [dm6]	C	A	2.992e^-4	0.93	INTRON Ubx
3R	5560182	3R_5560182_SNP [dm3] 3R_9734460_SNP [dm6]	T	A	2.998e^-4	0.93	UTR_3_PRIME CG12950 DOWNSTREAM CG12950
2L	13296839	2L_13296839_SNP [dm3] 2L_13296839_SNP [dm6]	G	A	3.001e^-4	0.93	INTRON CG31729	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	6363515	2R_6363515_SNP [dm3] 2R_10476010_SNP [dm6]	C	T	3.002e^-4	0.93	UPSTREAM whd INTRON whd	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	15287230	3L_15287230_SNP [dm3] 3L_15294130_SNP [dm6]	A	C	3.009e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_jumu
3R	21391464	3R_21391464_SNP [dm3] 3R_25565742_SNP [dm6]	A	G	3.012e^-4	0.93	INTRON msi
X	7549723	X_7549723_SNP [dm3] X_7655690_SNP [dm6]	T	A	3.012e^-4	0.93	INTRON ct	TF binding site mE1_TFBS_inv
2R	4216726	2R_4216726_SNP [dm3] 2R_8329221_SNP [dm6]	G	A	3.015e^-4	0.93	INTRON pdm3
2L	4091385	2L_4091385_SNP [dm3] 2L_4091385_SNP [dm6]	A	T	3.018e^-4	0.93	INTRON ed
X	3261617	X_3261617_SNP [dm3] X_3367584_SNP [dm6]	T	C	3.031e^-4	0.93	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	15543558	X_15543558_SNP [dm3] X_15649525_SNP [dm6]	G	A	3.034e^-4	0.93	INTERGENIC
2R	14185220	2R_14185220_SNP [dm3] 2R_18297715_SNP [dm6]	T	A	3.035e^-4	0.93	SYNONYMOUS_CODING CG18538 UPSTREAM CG18539 INTRON sbb
X	19017862	X_19017862_SNP [dm3] X_19123829_SNP [dm6]	A	C	3.043e^-4	0.93	NON_SYNONYMOUS_CODING CG15882
2L	4470515	2L_4470515_SNP [dm3] 2L_4470515_SNP [dm6]	G	A	3.053e^-4	0.93	INTRON ine	TF binding site mE1_TFBS_cad
3L	5050586	3L_5050586_SNP [dm3] 3L_5050586_SNP [dm6]	T	C	3.060e^-4	0.93	DOWNSTREAM CR43884 INTRON Con
2L	1357600	2L_1357600_SNP [dm3] 2L_1357600_SNP [dm6]	G	A	3.064e^-4	0.93	INTERGENIC
2R	15067584	2R_15067584_SNP [dm3] 2R_19180079_SNP [dm6]	C	T	3.064e^-4	0.93	INTRON hppy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	12183025	3L_12183025_SNP [dm3] 3L_12189925_SNP [dm6]	T	C	3.064e^-4	0.93	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
3L	12183069	3L_12183069_SNP [dm3] 3L_12189969_SNP [dm6]	T	C	3.064e^-4	0.93	NON_SYNONYMOUS_CODING Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_sens
3L	12183664	3L_12183664_SNP [dm3] 3L_12190564_SNP [dm6]	A	C	3.064e^-4	0.93	UTR_3_PRIME Est-6 UPSTREAM Est-P	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	12184641	3L_12184641_SNP [dm3] 3L_12191541_SNP [dm6]	G	A	3.064e^-4	0.93	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12185202	3L_12185202_SNP [dm3] 3L_12192102_SNP [dm6]	C	G	3.064e^-4	0.93	SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
3L	12185245	3L_12185245_SNP [dm3] 3L_12192145_SNP [dm6]	C	G	3.064e^-4	0.93	UTR_3_PRIME thoc6 DOWNSTREAM thoc6 INTRON Est-P
3L	12185264	3L_12185264_SNP [dm3] 3L_12192164_SNP [dm6]	C	T	3.064e^-4	0.93	UTR_3_PRIME thoc6 DOWNSTREAM thoc6 INTRON Est-P
3L	12189034	3L_12189034_SNP [dm3] 3L_12195934_SNP [dm6]	C	T	3.064e^-4	0.93	EXON CR45746
3L	12192912	3L_12192912_SNP [dm3] 3L_12199812_SNP [dm6]	C	T	3.064e^-4	0.93	DOWNSTREAM CG11529 & 1 other INTERGENIC
3L	12195682	3L_12195682_SNP [dm3] 3L_12202582_SNP [dm6]	C	T	3.064e^-4	0.93	INTRON Adk1
3L	12195712	3L_12195712_SNP [dm3] 3L_12202612_SNP [dm6]	T	C	3.064e^-4	0.93	INTRON Adk1
3L	12195740	3L_12195740_SNP [dm3] 3L_12202640_SNP [dm6]	C	T	3.064e^-4	0.93	INTRON Adk1
3L	12195744	3L_12195744_SNP [dm3] 3L_12202644_SNP [dm6]	G	A	3.064e^-4	0.93	INTRON Adk1
3L	12196958	3L_12196958_SNP [dm3] 3L_12203858_SNP [dm6]	C	G	3.064e^-4	0.93	UTR_5_PRIME Adk1 DOWNSTREAM CG5626	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12197094	3L_12197094_SNP [dm3] 3L_12203994_SNP [dm6]	A	G	3.064e^-4	0.93	UTR_5_PRIME Adk1 UPSTREAM Adk1 DOWNSTREAM CG5626	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	12197990	3L_12197990_SNP [dm3] 3L_12204890_SNP [dm6]	T	A	3.064e^-4	0.93	NON_SYNONYMOUS_CODING CG5626 UPSTREAM Adk1
3L	12198357	3L_12198357_SNP [dm3] 3L_12205257_SNP [dm6]	C	T	3.064e^-4	0.93	SYNONYMOUS_CODING CG5626 DOWNSTREAM app
3L	12198846	3L_12198846_SNP [dm3] 3L_12205746_SNP [dm6]	T	A	3.064e^-4	0.93	DOWNSTREAM app INTRON CG5626
3L	12200724	3L_12200724_SNP [dm3] 3L_12207624_SNP [dm6]	G	A	3.064e^-4	0.93	SYNONYMOUS_CODING app UTR_3_PRIME app	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12894970	3L_12894970_SNP [dm3] 3L_12901870_SNP [dm6]	G	A	3.064e^-4	0.93	SYNONYMOUS_CODING CG12520 UTR_3_PRIME CG12520
3L	5143425	3L_5143425_SNP [dm3] 3L_5150325_SNP [dm6]	A	G	3.064e^-4	0.93	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	18706416	X_18706416_SNP [dm3] X_18812383_SNP [dm6]	A	T	3.064e^-4	0.93	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC
X	18706634	X_18706634_SNP [dm3] X_18812601_SNP [dm6]	A	T	3.064e^-4	0.93	UPSTREAM CG42450 DOWNSTREAM CG7058 INTERGENIC	transposable element FlyBase
X	18707330	X_18707330_SNP [dm3] X_18813297_SNP [dm6]	C	T	3.064e^-4	0.93	UTR_5_PRIME CG42450	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	20394414	X_20394414_SNP [dm3] X_20523387_SNP [dm6]	T	A	3.064e^-4	0.93	INTRON Tak1
X	20394432	X_20394432_SNP [dm3] X_20523405_SNP [dm6]	C	T	3.064e^-4	0.93	INTRON Tak1
X	20394440	X_20394440_SNP [dm3] X_20523413_SNP [dm6]	A	G	3.064e^-4	0.93	INTRON Tak1
X	3082316	X_3082316_SNP [dm3] X_3188283_SNP [dm6]	T	A	3.064e^-4	0.93	INTRON dnc	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	19554279	3R_19554279_SNP [dm3] 3R_23728557_SNP [dm6]	A	G	3.068e^-4	0.93	UTR_5_PRIME CG10365 INTRON CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19877010	X_19877010_SNP [dm3] X_19982977_SNP [dm6]	G	A	3.072e^-4	0.93	INTERGENIC
X	5099856	X_5099856_SNP [dm3] X_5205823_SNP [dm6]	A	C	3.083e^-4	0.93	INTRON CG15465 & 1 other
2L	9715478	2L_9715478_SNP [dm3] 2L_9715478_SNP [dm6]	A	T	3.092e^-4	0.93	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C	TF binding site BDTNP1_TFBS_dl
2L	19825562	2L_19825562_SNP [dm3] 2L_19825562_SNP [dm6]	A	C	3.095e^-4	0.93	UPSTREAM sick INTRON sick
3R	21284157	3R_21284157_SNP [dm3] 3R_25458435_SNP [dm6]	C	T	3.104e^-4	0.93	INTRON Fur1
X	9226173	X_9226173_SNP [dm3] X_9332140_SNP [dm6]	G	A	3.106e^-4	0.93	INTRON CG34449
X	9226180	X_9226180_DEL [dm3] X_9332147_DEL [dm6]	ATTTTAAA	A	3.106e^-4	0.93	INTRON CG34449
3L	11154015	3L_11154015_SNP [dm3] 3L_11160915_SNP [dm6]	C	A	3.112e^-4	0.93	SYNONYMOUS_CODING CG32082
X	8759079	X_8759079_SNP [dm3] X_8865046_SNP [dm6]	T	A	3.115e^-4	0.93	INTRON CG12075
2L	14146801	2L_14146801_SNP [dm3] 2L_14146801_SNP [dm6]	G	A	3.116e^-4	0.93	INTRON CG17341
2L	3071323	2L_3071323_SNP [dm3] 2L_3071323_SNP [dm6]	T	C	3.122e^-4	0.93	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26820781	3R_26820781_SNP [dm3] 3R_30995059_SNP [dm6]	C	T	3.130e^-4	0.93	INTRON 5-HT7
3R	26820788	3R_26820788_SNP [dm3] 3R_30995066_SNP [dm6]	G	A	3.130e^-4	0.93	INTRON 5-HT7
3L	11026830	3L_11026830_SNP [dm3] 3L_11033730_SNP [dm6]	T	A	3.133e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
3L	11026857	3L_11026857_SNP [dm3] 3L_11033757_SNP [dm6]	A	G	3.133e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
2R	3479594	2R_3479594_SNP [dm3] 2R_7592089_SNP [dm6]	T	C	3.134e^-4	0.93	SYNONYMOUS_CODING scra	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	19877009	X_19877009_SNP [dm3] X_19982976_SNP [dm6]	A	G	3.138e^-4	0.93	INTERGENIC
X	19877503	X_19877503_SNP [dm3] X_19983470_SNP [dm6]	C	G	3.138e^-4	0.93	INTERGENIC
X	19877506	X_19877506_DEL [dm3] X_19983473_DEL [dm6]	CAATAAACAAATTCAAGTGA...	C	3.138e^-4	0.93	INTERGENIC
X	19878888	X_19878888_SNP [dm3] X_19984855_SNP [dm6]	A	G	3.138e^-4	0.93	INTERGENIC
X	19878907	X_19878907_SNP [dm3] X_19984874_SNP [dm6]	A	T	3.138e^-4	0.93	INTERGENIC
X	19878938	X_19878938_SNP [dm3] X_19984905_SNP [dm6]	G	T	3.138e^-4	0.93	INTERGENIC
3L	6757282	3L_6757282_SNP [dm3] 3L_6764182_SNP [dm6]	G	A	3.160e^-4	0.93	UPSTREAM CG32392 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2390104	3L_2390104_SNP [dm3] 3L_2390104_SNP [dm6]	C	G	3.168e^-4	0.93	NON_SYNONYMOUS_CODING CG32299 UTR_3_PRIME CG32298 DOWNSTREAM CG42787 INTRON CG45186	TF binding site mE1_TFBS_sens
2L	10986144	2L_10986144_INS [dm3] 2L_10986144_INS [dm6]	A	ATTA	3.169e^-4	0.93	INTRON piwi	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	15958149	2L_15958149_SNP [dm3] 2L_15958149_SNP [dm6]	A	T	3.188e^-4	0.93	INTRON beat-Ib & 1 other
3R	11898025	3R_11898025_SNP [dm3] 3R_16072303_SNP [dm6]	G	A	3.197e^-4	0.93	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	24285277	3R_24285277_SNP [dm3] 3R_28459555_SNP [dm6]	A	T	3.211e^-4	0.93	INTRON beat-VI
3R	19136597	3R_19136597_SNP [dm3] 3R_23310875_SNP [dm6]	G	T	3.214e^-4	0.93	INTRON pnt
2L	13833091	2L_13833091_SNP [dm3] 2L_13833091_SNP [dm6]	G	A	3.217e^-4	0.93	START_GAINED DNApol-gamma35 & 1 other UTR_5_PRIME DNApol-gamma35 & 1 other UPSTREAM RpII33	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	13833110	2L_13833110_SNP [dm3] 2L_13833110_SNP [dm6]	G	T	3.217e^-4	0.93	UPSTREAM RpII33 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	13833157	2L_13833157_SNP [dm3] 2L_13833157_SNP [dm6]	G	T	3.217e^-4	0.93	UPSTREAM RpII33 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	13833170	2L_13833170_SNP [dm3] 2L_13833170_SNP [dm6]	T	C	3.217e^-4	0.93	UPSTREAM RpII33 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
2L	13833181	2L_13833181_SNP [dm3] 2L_13833181_SNP [dm6]	T	C	3.217e^-4	0.93	UPSTREAM RpII33 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens
3L	22218546	3L_22218546_INS [dm3] 3L_22225446_INS [dm6]	G	GACGG	3.266e^-4	0.93	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
2R	14185281	2R_14185281_SNP [dm3] 2R_18297776_SNP [dm6]	T	A	3.273e^-4	0.93	UPSTREAM CG18539 DOWNSTREAM CG18538 INTRON sbb
2L	14676114	2L_14676114_SNP [dm3] 2L_14676114_SNP [dm6]	T	C	3.284e^-4	0.93	INTRON osp
2L	11698782	2L_11698782_SNP [dm3] 2L_11698782_SNP [dm6]	A	G	3.290e^-4	0.93	INTERGENIC
X	9226450	X_9226450_SNP [dm3] X_9332417_SNP [dm6]	G	A	3.297e^-4	0.93	INTRON CG34449
2R	8279227	2R_8279227_SNP [dm3] 2R_12391722_SNP [dm6]	A	G	3.298e^-4	0.93	UPSTREAM Cpr49Ad INTERGENIC
3R	26241515	3R_26241515_SNP [dm3] 3R_30415793_SNP [dm6]	A	C	3.301e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	16203938	2R_16203938_SNP [dm3] 2R_20316433_SNP [dm6]	A	G	3.304e^-4	0.93	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
2R	12636335	2R_12636335_SNP [dm3] 2R_16748830_SNP [dm6]	A	T	3.310e^-4	0.93	UTR_3_PRIME Acp53C14b UPSTREAM Acp53C14a DOWNSTREAM Acp53C14b & 1 other
X	2727576	X_2727576_SNP [dm3] X_2833543_SNP [dm6]	A	G	3.327e^-4	0.93	INTRON kirre
3L	12184070	3L_12184070_SNP [dm3] 3L_12190970_SNP [dm6]	A	G	3.344e^-4	0.93	NON_SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6
2L	17536300	2L_17536300_SNP [dm3] 2L_17536300_SNP [dm6]	G	A	3.345e^-4	0.93	INTERGENIC
3R	18458065	3R_18458065_SNP [dm3] 3R_22632343_SNP [dm6]	A	G	3.349e^-4	0.93	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	19554234	3R_19554234_DEL [dm3] 3R_23728512_DEL [dm6]	ACTAGGCATTTGTACAA...	A	3.355e^-4	0.93	UTR_5_PRIME CG10365 UPSTREAM CG10365 INTRON CG10365	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12186572	3L_12186572_SNP [dm3] 3L_12193472_SNP [dm6]	C	T	3.369e^-4	0.93	DOWNSTREAM Est-P INTRON thoc6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_jumu
3R	19857503	3R_19857503_SNP [dm3] 3R_24031781_SNP [dm6]	G	A	3.373e^-4	0.93	START_GAINED KrT95D UTR_5_PRIME KrT95D UPSTREAM Ime4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	9758432	3L_9758432_SNP [dm3] 3L_9765332_SNP [dm6]	G	A	3.380e^-4	0.93	INTRON CG8177
3L	1495369	3L_1495369_SNP [dm3] 3L_1495369_SNP [dm6]	C	T	3.384e^-4	0.93	INTRON CG12084
3L	12128368	3L_12128368_SNP [dm3] 3L_12135268_SNP [dm6]	C	T	3.387e^-4	0.93	NON_SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	12681309	2L_12681309_SNP [dm3] 2L_12681309_SNP [dm6]	A	C	3.390e^-4	0.93	INTRON pdm2	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	10168157	3L_10168157_SNP [dm3] 3L_10175057_SNP [dm6]	A	T	3.396e^-4	0.93	INTRON dpr10
3L	12621960	3L_12621960_SNP [dm3] 3L_12628860_SNP [dm6]	A	T	3.400e^-4	0.93	INTRON CR32111
X	20867428	X_20867428_SNP [dm3] X_20996401_SNP [dm6]	T	A	3.418e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	20867430	X_20867430_SNP [dm3] X_20996403_SNP [dm6]	C	T	3.418e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	17199424	3R_17199424_SNP [dm3] 3R_21373702_SNP [dm6]	C	T	3.418e^-4	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16824877	3R_16824877_SNP [dm3] 3R_20999155_SNP [dm6]	T	C	3.429e^-4	0.93	INTRON Calx
3R	26358094	3R_26358094_SNP [dm3] 3R_30532372_SNP [dm6]	C	A	3.463e^-4	0.93	UPSTREAM tmod & 1 other EXON CR45553	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7913874	3R_7913874_SNP [dm3] 3R_12088152_SNP [dm6]	C	A	3.469e^-4	0.93	INTRON CG14741
3L	4310773	3L_4310773_SNP [dm3] 3L_4310773_SNP [dm6]	G	T	3.474e^-4	0.93	INTERGENIC
3R	21485065	3R_21485065_SNP [dm3] 3R_25659343_SNP [dm6]	G	C	3.477e^-4	0.93	INTRON Tnks	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	16138276	3L_16138276_DEL [dm3] 3L_16145176_DEL [dm6]	CAATATTTCCCTTC...	C	3.482e^-4	0.93	INTRON CG5151
3L	16139408	3L_16139408_SNP [dm3] 3L_16146308_SNP [dm6]	C	T	3.482e^-4	0.93	INTRON CG5151	TF binding site mE1_TFBS_Trl
3L	16139619	3L_16139619_SNP [dm3] 3L_16146519_SNP [dm6]	A	C	3.482e^-4	0.93	INTRON CG5151
3R	25661281	3R_25661281_SNP [dm3] 3R_29835559_SNP [dm6]	C	T	3.484e^-4	0.93	UPSTREAM CG15510 & 1 other DOWNSTREAM CG42592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
2L	11130945	2L_11130945_SNP [dm3] 2L_11130945_SNP [dm6]	T	C	3.487e^-4	0.93	SYNONYMOUS_CODING CG4751 UPSTREAM RfC38	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3R	16320440	3R_16320440_SNP [dm3] 3R_20494718_SNP [dm6]	T	G	3.489e^-4	0.93	INTERGENIC
2L	19802451	2L_19802451_SNP [dm3] 2L_19802451_SNP [dm6]	T	G	3.491e^-4	0.93	INTRON sick
3R	24278054	3R_24278054_SNP [dm3] 3R_28452332_SNP [dm6]	G	A	3.496e^-4	0.93	INTRON beat-VI	TF binding site mE1_TFBS_chinmo
3L	12198834	3L_12198834_SNP [dm3] 3L_12205734_SNP [dm6]	T	A	3.530e^-4	0.93	DOWNSTREAM app INTRON CG5626
2L	13429582	2L_13429582_SNP [dm3] 2L_13429582_SNP [dm6]	T	A	3.535e^-4	0.93	INTRON CG42784	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	8594853	2R_8594853_SNP [dm3] 2R_12707348_SNP [dm6]	T	C	3.537e^-4	0.93	INTRON CG42663
3R	26671577	3R_26671577_SNP [dm3] 3R_30845855_SNP [dm6]	T	C	3.542e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	3219761	2L_3219761_SNP [dm3] 2L_3219761_SNP [dm6]	T	C	3.548e^-4	0.93	INTERGENIC
3L	20192718	3L_20192718_SNP [dm3] 3L_20199618_SNP [dm6]	G	T	3.548e^-4	0.93	UPSTREAM CG42833 DOWNSTREAM obst-F INTERGENIC
3R	22975263	3R_22975263_SNP [dm3] 3R_27149541_SNP [dm6]	G	A	3.557e^-4	0.93	INTRON CG6051	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	12130562	2R_12130562_SNP [dm3] 2R_16243057_SNP [dm6]	G	C	3.561e^-4	0.93	DOWNSTREAM CngA INTERGENIC
X	16126149	X_16126149_SNP [dm3] X_16232116_SNP [dm6]	A	C	3.567e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	11744073	3L_11744073_SNP [dm3] 3L_11750973_SNP [dm6]	T	G	3.574e^-4	0.93	UPSTREAM Gr68a INTRON CG6024
3R	24936843	3R_24936843_SNP [dm3] 3R_29111121_SNP [dm6]	T	C	3.600e^-4	0.93	SYNONYMOUS_CODING alpha-Man-Ib	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9963925	2L_9963925_SNP [dm3] 2L_9963925_SNP [dm6]	A	T	3.600e^-4	0.93	UTR_5_PRIME CG5850 UPSTREAM CG5850 DOWNSTREAM Dref	TF binding site mE1_TFBS_HSA
2L	974122	2L_974122_SNP [dm3] 2L_974122_SNP [dm6]	G	T	3.614e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	14541567	3L_14541567_SNP [dm3] 3L_14548467_SNP [dm6]	A	G	3.614e^-4	0.93	INTRON CG9238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	16321408	3R_16321408_SNP [dm3] 3R_20495686_SNP [dm6]	A	T	3.618e^-4	0.93	INTERGENIC
X	19878860	X_19878860_SNP [dm3] X_19984827_SNP [dm6]	G	T	3.618e^-4	0.93	INTERGENIC
3L	19081986	3L_19081986_SNP [dm3] 3L_19088886_SNP [dm6]	T	A	3.641e^-4	0.93	INTERGENIC
2L	9651062	2L_9651062_SNP [dm3] 2L_9651062_SNP [dm6]	T	C	3.655e^-4	0.93	SYNONYMOUS_CODING Apoltp
X	2410129	X_2410129_SNP [dm3] X_2516096_SNP [dm6]	A	G	3.680e^-4	0.93	INTRON trol
X	8759081	X_8759081_SNP [dm3] X_8865048_SNP [dm6]	T	A	3.692e^-4	0.93	INTRON CG12075
3R	17111952	3R_17111952_SNP [dm3] 3R_21286230_SNP [dm6]	T	C	3.699e^-4	0.93	INTRON SIFaR
3R	17112071	3R_17112071_SNP [dm3] 3R_21286349_SNP [dm6]	G	A	3.699e^-4	0.93	INTRON SIFaR
X	6474432	X_6474432_SNP [dm3] X_6580399_SNP [dm6]	C	G	3.704e^-4	0.93	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_chinmo
3L	6293685	3L_6293685_SNP [dm3] 3L_6300585_SNP [dm6]	A	G	3.718e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	6293687	3L_6293687_SNP [dm3] 3L_6300587_SNP [dm6]	G	T	3.718e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	15287490	2R_15287490_SNP [dm3] 2R_19399985_SNP [dm6]	A	G	3.733e^-4	0.93	SYNONYMOUS_CODING hts INTRON hts EXON CR43430
2L	13982681	2L_13982681_DEL [dm3] 2L_13982681_DEL [dm6]	AT	G	3.737e^-4	0.93	UTR_3_PRIME NimC2 DOWNSTREAM rk	TF binding site mE1_TFBS_cad
2R	6334843	2R_6334843_INS [dm3] 2R_10447338_INS [dm6]	G	GGTATTAGATATTTGG...	3.741e^-4	0.93	INTRON Galphao
3L	15296653	3L_15296653_SNP [dm3] 3L_15303553_SNP [dm6]	G	A	3.744e^-4	0.93	UPSTREAM Best3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	16824633	3R_16824633_SNP [dm3] 3R_20998911_SNP [dm6]	T	G	3.750e^-4	0.93	INTRON Calx
2R	16205977	2R_16205977_SNP [dm3] 2R_20318472_SNP [dm6]	A	T	3.761e^-4	0.93	SYNONYMOUS_CODING CG13871 UPSTREAM CG8920	TF binding site mE1_TFBS_cad
3R	16321311	3R_16321311_SNP [dm3] 3R_20495589_SNP [dm6]	C	G	3.771e^-4	0.93	INTERGENIC
2R	17903979	2R_17903979_SNP [dm3] 2R_22016474_SNP [dm6]	T	C	3.784e^-4	0.93	INTRON CG34370
X	21097717	X_21097717_SNP [dm3] X_21226690_SNP [dm6]	T	G	3.791e^-4	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl
2L	5560868	2L_5560868_SNP [dm3] 2L_5560868_SNP [dm6]	A	G	3.799e^-4	0.93	INTRON GluRIIB
X	18698620	X_18698620_SNP [dm3] X_18804587_SNP [dm6]	T	C	3.807e^-4	0.93	DOWNSTREAM CR44841 INTRON Pk17E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	3505007	3R_3505007_SNP [dm3] 3R_7679285_SNP [dm6]	C	G	3.819e^-4	0.93	INTRON Nlg1
X	19877502	X_19877502_SNP [dm3] X_19983469_SNP [dm6]	G	A	3.844e^-4	0.93	INTERGENIC
3L	10861727	3L_10861727_SNP [dm3] 3L_10868627_SNP [dm6]	G	A	3.852e^-4	0.93	INTRON tna
3L	16139150	3L_16139150_SNP [dm3] 3L_16146050_SNP [dm6]	C	T	3.857e^-4	0.93	INTRON CG5151	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	10135371	X_10135371_SNP [dm3] X_10241338_SNP [dm6]	A	G	3.873e^-4	0.93	INTRON Hk
2R	16663751	2R_16663751_SNP [dm3] 2R_20776246_SNP [dm6]	T	C	3.892e^-4	0.93	NON_SYNONYMOUS_CODING CG43709 DOWNSTREAM CG13443 & 1 other
3L	12128199	3L_12128199_SNP [dm3] 3L_12135099_SNP [dm6]	C	T	3.907e^-4	0.93	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad
2L	19802392	2L_19802392_SNP [dm3] 2L_19802392_SNP [dm6]	C	T	3.925e^-4	0.93	INTRON sick
2L	19802397	2L_19802397_SNP [dm3] 2L_19802397_SNP [dm6]	T	A	3.925e^-4	0.93	INTRON sick
3R	7888242	3R_7888242_INS [dm3] 3R_12062520_INS [dm6]	A	AAAATTTTT	3.929e^-4	0.93	INTRON CG14740
3L	22423162	3L_22423162_SNP [dm3] 3L_22430062_SNP [dm6]	G	A	3.932e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	13140574	2L_13140574_SNP [dm3] 2L_13140574_SNP [dm6]	T	C	3.938e^-4	0.93	INTERGENIC
2L	13210858	2L_13210858_SNP [dm3] 2L_13210858_SNP [dm6]	A	T	3.943e^-4	0.93	NON_SYNONYMOUS_CODING CG15482 DOWNSTREAM Pect	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	19207015	2R_19207015_SNP [dm3] 2R_23319492_SNP [dm6]	C	T	3.946e^-4	0.93	UPSTREAM CG30412 INTERGENIC
2R	19207032	2R_19207032_SNP [dm3] 2R_23319509_SNP [dm6]	G	A	3.946e^-4	0.93	UPSTREAM CG30412 INTERGENIC
3R	12383509	3R_12383509_SNP [dm3] 3R_16557787_SNP [dm6]	A	T	3.955e^-4	0.93	INTRON CG42342
3L	5143305	3L_5143305_SNP [dm3] 3L_5150205_SNP [dm6]	A	G	3.955e^-4	0.93	SYNONYMOUS_CODING Gen DOWNSTREAM Aats-ala-m	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11834077	2R_11834077_SNP [dm3] 2R_15946572_SNP [dm6]	T	C	3.963e^-4	0.93	SYNONYMOUS_CODING Cyp4aa1 DOWNSTREAM mir-4919 & 1 other
3L	447617	3L_447617_SNP [dm3] 3L_447617_SNP [dm6]	A	C	3.965e^-4	0.93	INTRON klar	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	11907617	3R_11907617_SNP [dm3] 3R_16081895_SNP [dm6]	T	A	3.966e^-4	0.93	UPSTREAM CG32855 INTRON Mhcl
3L	11884688	3L_11884688_SNP [dm3] 3L_11891588_SNP [dm6]	A	C	3.978e^-4	0.93	INTRON CG44837
2L	2485490	2L_2485490_SNP [dm3] 2L_2485490_SNP [dm6]	A	T	3.986e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
X	11056112	X_11056112_SNP [dm3] X_11162079_SNP [dm6]	C	A	3.988e^-4	0.93	SPLICE_SITE_REGION Dlic INTRON Dlic	TF binding site mE1_TFBS_sens
2R	18066703	2R_18066703_SNP [dm3] 2R_22179198_SNP [dm6]	C	T	3.990e^-4	0.93	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17315228	2R_17315228_SNP [dm3] 2R_21427723_SNP [dm6]	C	T	3.992e^-4	0.93	INTRON Sdc
2R	18066277	2R_18066277_DEL [dm3] 2R_22178772_DEL [dm6]	AC	A	4.013e^-4	0.93	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_twi
X	2328992	X_2328992_SNP [dm3] X_2434959_SNP [dm6]	G	A	4.016e^-4	0.93	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	12463466	2L_12463466_SNP [dm3] 2L_12463466_SNP [dm6]	T	C	4.027e^-4	0.93	INTRON bun
2L	3219625	2L_3219625_SNP [dm3] 2L_3219625_SNP [dm6]	G	T	4.038e^-4	0.93	INTERGENIC
3L	12182162	3L_12182162_SNP [dm3] 3L_12189062_SNP [dm6]	G	T	4.043e^-4	0.93	SYNONYMOUS_CODING Est-6
2R	13891155	2R_13891155_SNP [dm3] 2R_18003650_SNP [dm6]	A	G	4.052e^-4	0.93	INTRON dpr13
3R	2217085	3R_2217085_SNP [dm3] 3R_6391363_SNP [dm6]	C	T	4.061e^-4	0.93	SYNONYMOUS_CODING Dmtn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12185218	3L_12185218_SNP [dm3] 3L_12192118_SNP [dm6]	C	A	4.062e^-4	0.93	NON_SYNONYMOUS_CODING Est-P UTR_3_PRIME thoc6 DOWNSTREAM thoc6
X	11056113	X_11056113_SNP [dm3] X_11162080_SNP [dm6]	C	A	4.069e^-4	0.93	SPLICE_SITE_REGION Dlic INTRON Dlic	TF binding site mE1_TFBS_sens
X	9226164	X_9226164_SNP [dm3] X_9332131_SNP [dm6]	A	T	4.080e^-4	0.93	INTRON CG34449
3L	14914514	3L_14914514_SNP [dm3] 3L_14921414_SNP [dm6]	C	T	4.084e^-4	0.93	UPSTREAM DCX-EMAP INTRON DCX-EMAP
3L	16138130	3L_16138130_SNP [dm3] 3L_16145030_SNP [dm6]	T	G	4.084e^-4	0.93	UPSTREAM CG32152 & 1 other INTRON CG5151
3L	16138134	3L_16138134_SNP [dm3] 3L_16145034_SNP [dm6]	T	A	4.084e^-4	0.93	UPSTREAM CG32152 & 1 other INTRON CG5151
2L	17519768	2L_17519768_SNP [dm3] 2L_17519768_SNP [dm6]	A	G	4.093e^-4	0.93	SYNONYMOUS_CODING Dhc36C
3R	22880116	3R_22880116_SNP [dm3] 3R_27054394_SNP [dm6]	T	A	4.108e^-4	0.93	INTRON RYa-R
2L	2485355	2L_2485355_SNP [dm3] 2L_2485355_SNP [dm6]	A	G	4.113e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	2485440	2L_2485440_SNP [dm3] 2L_2485440_SNP [dm6]	A	G	4.113e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	9983903	2L_9983903_SNP [dm3] 2L_9983903_SNP [dm6]	G	A	4.121e^-4	0.93	UPSTREAM bib EXON CR13130	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	6953253	3R_6953253_SNP [dm3] 3R_11127531_SNP [dm6]	C	A	4.123e^-4	0.93	NON_SYNONYMOUS_CODING Ugt86Dd
2L	11698564	2L_11698564_SNP [dm3] 2L_11698564_SNP [dm6]	G	T	4.123e^-4	0.93	INTERGENIC
2L	14054230	2L_14054230_SNP [dm3] 2L_14054230_SNP [dm6]	G	A	4.128e^-4	0.93	INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	13624855	3L_13624855_SNP [dm3] 3L_13631755_SNP [dm6]	C	T	4.129e^-4	0.93	INTRON bru-3
2L	15047507	2L_15047507_SNP [dm3] 2L_15047507_SNP [dm6]	C	T	4.135e^-4	0.93	SPLICE_SITE_REGION ck INTRON ck
3R	14458388	3R_14458388_SNP [dm3] 3R_18632666_SNP [dm6]	G	T	4.145e^-4	0.93	INTRON qin & 1 other
3L	276093	3L_276093_SNP [dm3] 3L_276093_SNP [dm6]	T	C	4.149e^-4	0.93	SYNONYMOUS_CODING ttm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	276144	3L_276144_SNP [dm3] 3L_276144_SNP [dm6]	G	A	4.149e^-4	0.93	SYNONYMOUS_CODING ttm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6058187	2R_6058187_SNP [dm3] 2R_10170682_SNP [dm6]	G	T	4.173e^-4	0.93	INTRON KCNQ
X	19016259	X_19016259_SNP [dm3] X_19122226_SNP [dm6]	G	A	4.184e^-4	0.93	INTERGENIC	transposable element FlyBase
X	19016296	X_19016296_SNP [dm3] X_19122263_SNP [dm6]	A	G	4.184e^-4	0.93	INTERGENIC	transposable element FlyBase
X	19016313	X_19016313_SNP [dm3] X_19122280_SNP [dm6]	C	G	4.184e^-4	0.93	INTERGENIC	transposable element FlyBase
X	19016496	X_19016496_SNP [dm3] X_19122463_SNP [dm6]	A	G	4.184e^-4	0.93	INTERGENIC
3L	9515897	3L_9515897_SNP [dm3] 3L_9522797_SNP [dm6]	A	T	4.188e^-4	0.93	INTRON CG33700
3R	24477125	3R_24477125_SNP [dm3] 3R_28651403_SNP [dm6]	A	C	4.188e^-4	0.93	UPSTREAM CG31050 INTERGENIC
2L	13714091	2L_13714091_SNP [dm3] 2L_13714091_SNP [dm6]	G	T	4.192e^-4	0.93	SYNONYMOUS_CODING CG31814
3L	12076830	3L_12076830_SNP [dm3] 3L_12083730_SNP [dm6]	T	C	4.200e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	16721311	3R_16721311_SNP [dm3] 3R_20895589_SNP [dm6]	C	T	4.206e^-4	0.93	UTR_3_PRIME CG10830
2L	2485509	2L_2485509_SNP [dm3] 2L_2485509_SNP [dm6]	T	A	4.215e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	6143268	2L_6143268_SNP [dm3] 2L_6143268_SNP [dm6]	C	A	4.216e^-4	0.93	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	6143274	2L_6143274_SNP [dm3] 2L_6143274_SNP [dm6]	G	A	4.216e^-4	0.93	SYNONYMOUS_CODING CG13991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12890308	X_12890308_SNP [dm3] X_12996275_SNP [dm6]	C	A	4.216e^-4	0.93	INTRON rad	TF binding site BDTNP1_TFBS_twi
X	18043623	X_18043623_SNP [dm3] X_18149590_SNP [dm6]	G	C	4.218e^-4	0.93	INTERGENIC
3L	11852108	3L_11852108_SNP [dm3] 3L_11859008_SNP [dm6]	A	T	4.220e^-4	0.93	INTRON CG44837
3L	12907262	3L_12907262_SNP [dm3] 3L_12914162_SNP [dm6]	T	C	4.241e^-4	0.93	UPSTREAM CG32115 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	13314326	2L_13314326_SNP [dm3] 2L_13314326_SNP [dm6]	G	A	4.255e^-4	0.93	INTRON CG43778
X	19877187	X_19877187_SNP [dm3] X_19983154_SNP [dm6]	C	T	4.266e^-4	0.93	INTERGENIC
X	19877188	X_19877188_SNP [dm3] X_19983155_SNP [dm6]	C	G	4.266e^-4	0.93	INTERGENIC
X	19877362	X_19877362_SNP [dm3] X_19983329_SNP [dm6]	C	A	4.266e^-4	0.93	INTERGENIC
X	19877371	X_19877371_SNP [dm3] X_19983338_SNP [dm6]	C	A	4.266e^-4	0.93	INTERGENIC
3R	16824660	3R_16824660_SNP [dm3] 3R_20998938_SNP [dm6]	G	T	4.270e^-4	0.93	INTRON Calx
X	12869831	X_12869831_SNP [dm3] X_12975798_SNP [dm6]	A	T	4.275e^-4	0.93	INTRON CG12716	TF binding site mE1_TFBS_inv
2R	11441151	2R_11441151_SNP [dm3] 2R_15553646_SNP [dm6]	C	T	4.284e^-4	0.93	INTERGENIC
2L	18180846	2L_18180846_SNP [dm3] 2L_18180846_SNP [dm6]	C	A	4.294e^-4	0.93	DOWNSTREAM CG7180 INTRON CG42750
2R	13527465	2R_13527465_SNP [dm3] 2R_17639960_SNP [dm6]	A	G	4.295e^-4	0.93	UPSTREAM CG10936 INTERGENIC
X	14196323	X_14196323_SNP [dm3] X_14302290_SNP [dm6]	T	C	4.295e^-4	0.93	INTERGENIC
3L	12894388	3L_12894388_SNP [dm3] 3L_12901288_SNP [dm6]	T	C	4.297e^-4	0.93	UTR_3_PRIME CG12520
2L	17190190	2L_17190190_SNP [dm3] 2L_17190190_SNP [dm6]	T	G	4.321e^-4	0.93	SYNONYMOUS_CODING beat-IIIc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22822406	3R_22822406_SNP [dm3] 3R_26996684_SNP [dm6]	T	G	4.331e^-4	0.93	UPSTREAM RYa-R DOWNSTREAM TwdlC INTERGENIC
3L	22218529	3L_22218529_SNP [dm3] 3L_22225429_SNP [dm6]	G	T	4.339e^-4	0.93	DOWNSTREAM CR45035 INTRON olf413	TF binding site BDTNP1_TFBS_dl
2R	18001562	2R_18001562_SNP [dm3] 2R_22114057_SNP [dm6]	G	T	4.353e^-4	0.93	SYNONYMOUS_CODING CG30280 UPSTREAM CG30281 INTRON Vrp1
3R	25620447	3R_25620447_SNP [dm3] 3R_29794725_SNP [dm6]	C	T	4.358e^-4	0.93	SYNONYMOUS_CODING sro DOWNSTREAM kay & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7409782	3L_7409782_SNP [dm3] 3L_7416682_SNP [dm6]	T	A	4.372e^-4	0.93	INTERGENIC
2L	2485481	2L_2485481_DEL [dm3] 2L_2485481_DEL [dm6]	AA	C	4.376e^-4	0.93	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
2L	11092019	2L_11092019_SNP [dm3] 2L_11092019_SNP [dm6]	A	C	4.380e^-4	0.93	SYNONYMOUS_CODING CG4705
3R	20742519	3R_20742519_SNP [dm3] 3R_24916797_SNP [dm6]	T	C	4.381e^-4	0.93	SYNONYMOUS_CODING CG44254 INTRON PIG-S	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	23150981	3R_23150981_SNP [dm3] 3R_27325259_SNP [dm6]	T	C	4.383e^-4	0.93	INTERGENIC
2R	12379059	2R_12379059_SNP [dm3] 2R_16491554_SNP [dm6]	G	C	4.385e^-4	0.93	SYNONYMOUS_CODING S-Lap8	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	11121365	2L_11121365_SNP [dm3] 2L_11121365_SNP [dm6]	A	C	4.387e^-4	0.93	INTRON CG14921
2R	12226137	2R_12226137_SNP [dm3] 2R_16338632_SNP [dm6]	G	A	4.388e^-4	0.93	UPSTREAM Hmgs INTRON Hmgs	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	16820241	3R_16820241_SNP [dm3] 3R_20994519_SNP [dm6]	G	C	4.390e^-4	0.93	INTRON Calx	TF binding site mE1_TFBS_cad
3R	16820432	3R_16820432_SNP [dm3] 3R_20994710_SNP [dm6]	G	T	4.390e^-4	0.93	INTRON Calx
3R	16820448	3R_16820448_SNP [dm3] 3R_20994726_SNP [dm6]	A	T	4.390e^-4	0.93	INTRON Calx
3L	22394061	3L_22394061_SNP [dm3] 3L_22400961_SNP [dm6]	G	T	4.397e^-4	0.93	INTRON Ten-m	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	17976655	X_17976655_SNP [dm3] X_18082622_SNP [dm6]	C	G	4.401e^-4	0.93	INTRON CG7536
X	17345046	X_17345046_SNP [dm3] X_17451013_SNP [dm6]	C	T	4.404e^-4	0.93	NON_SYNONYMOUS_CODING CG8568	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14797581	2L_14797581_SNP [dm3] 2L_14797581_SNP [dm6]	C	A	4.411e^-4	0.93	UPSTREAM CG18420 INTERGENIC	TF binding site mE1_TFBS_Trl
X	12757418	X_12757418_SNP [dm3] X_12863385_SNP [dm6]	A	T	4.459e^-4	0.93	INTRON Pde9
3L	9206415	3L_9206415_SNP [dm3] 3L_9213315_SNP [dm6]	C	T	4.464e^-4	0.93	INTRON CG4476
3R	27182009	3R_27182009_SNP [dm3] 3R_31356287_SNP [dm6]	A	C	4.466e^-4	0.93	INTRON CG34347
3L	1038186	3L_1038186_SNP [dm3] 3L_1038186_SNP [dm6]	A	C	4.469e^-4	0.93	UTR_3_PRIME bab1	TF binding site mE1_TFBS_cad
X	8121544	X_8121544_SNP [dm3] X_8227511_SNP [dm6]	A	T	4.537e^-4	0.93	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2R	16410983	2R_16410983_SNP [dm3] 2R_20523478_SNP [dm6]	C	A	4.540e^-4	0.93	INTERGENIC
2L	14780522	2L_14780522_SNP [dm3] 2L_14780522_SNP [dm6]	A	G	4.552e^-4	0.93	INTERGENIC
3R	11898306	3R_11898306_SNP [dm3] 3R_16072584_SNP [dm6]	A	G	4.559e^-4	0.93	UPSTREAM Mhcl INTRON Mhcl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	15288895	2L_15288895_SNP [dm3] 2L_15288895_SNP [dm6]	G	A	4.569e^-4	0.93	INTERGENIC
X	19877499	X_19877499_SNP [dm3] X_19983466_SNP [dm6]	G	A	4.572e^-4	0.93	INTERGENIC
3R	26671581	3R_26671581_SNP [dm3] 3R_30845859_SNP [dm6]	C	T	4.589e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	26671609	3R_26671609_SNP [dm3] 3R_30845887_SNP [dm6]	T	A	4.589e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	6293672	3L_6293672_SNP [dm3] 3L_6300572_SNP [dm6]	C	A	4.617e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10895304	3R_10895304_SNP [dm3] 3R_15069582_SNP [dm6]	G	A	4.621e^-4	0.93	INTRON dpr9
2L	2691565	2L_2691565_SNP [dm3] 2L_2691565_SNP [dm6]	G	C	4.632e^-4	0.93	INTRON CG31690
2L	2610151	2L_2610151_SNP [dm3] 2L_2610151_SNP [dm6]	G	T	4.638e^-4	0.93	UTR_5_PRIME CG15395	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	17286759	3R_17286759_DEL [dm3] 3R_21461037_DEL [dm6]	TT	T	4.645e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13722597	2L_13722597_SNP [dm3] 2L_13722597_SNP [dm6]	C	A	4.649e^-4	0.93	SYNONYMOUS_CODING CG9014	TF binding site BDTNP1_TFBS_sna
3R	23286830	3R_23286830_SNP [dm3] 3R_27461108_SNP [dm6]	C	T	4.651e^-4	0.93	INTERGENIC
2R	18345818	2R_18345818_SNP [dm3] 2R_22458313_SNP [dm6]	G	T	4.652e^-4	0.93	INTRON CG10384
3R	10895317	3R_10895317_SNP [dm3] 3R_15069595_SNP [dm6]	G	C	4.702e^-4	0.93	INTRON dpr9
2L	15052266	2L_15052266_SNP [dm3] 2L_15052266_SNP [dm6]	A	G	4.705e^-4	0.93	INTRON ck	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13631306	X_13631306_SNP [dm3] X_13737273_SNP [dm6]	A	G	4.711e^-4	0.93	SYNONYMOUS_CODING Grip91 UPSTREAM g & 1 other	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
2R	18986542	2R_18986542_SNP [dm3] 2R_23099019_SNP [dm6]	G	A	4.724e^-4	0.93	INTERGENIC
2L	10375874	2L_10375874_SNP [dm3] 2L_10375874_SNP [dm6]	T	A	4.733e^-4	0.93	UPSTREAM dpr19 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
2L	15777382	2L_15777382_SNP [dm3] 2L_15777382_SNP [dm6]	A	G	4.740e^-4	0.93	UPSTREAM CG43760 INTERGENIC
3R	22978013	3R_22978013_SNP [dm3] 3R_27152291_SNP [dm6]	T	C	4.741e^-4	0.93	INTRON Men-b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens
2L	11813026	2L_11813026_SNP [dm3] 2L_11813026_SNP [dm6]	A	G	4.768e^-4	0.93	INTRON CycY	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23157209	3R_23157209_SNP [dm3] 3R_27331487_SNP [dm6]	T	A	4.789e^-4	0.93	UPSTREAM CG3330 INTERGENIC
X	16673460	X_16673460_SNP [dm3] X_16779427_SNP [dm6]	A	C	4.790e^-4	0.93	INTRON if
2R	7966856	2R_7966856_SNP [dm3] 2R_12079351_SNP [dm6]	G	T	4.793e^-4	0.93	UTR_5_PRIME CG8888
2R	7966859	2R_7966859_SNP [dm3] 2R_12079354_SNP [dm6]	A	G	4.793e^-4	0.93	UTR_5_PRIME CG8888
3R	17219664	3R_17219664_SNP [dm3] 3R_21393942_SNP [dm6]	A	C	4.796e^-4	0.93	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	12222901	3L_12222901_SNP [dm3] 3L_12229801_SNP [dm6]	A	C	4.814e^-4	0.93	INTRON app
3R	22829008	3R_22829008_SNP [dm3] 3R_27003286_SNP [dm6]	G	C	4.846e^-4	0.93	UTR_3_PRIME CG6296 DOWNSTREAM CG31077 INTRON RYa-R
3L	2376769	3L_2376769_SNP [dm3] 3L_2376769_SNP [dm6]	G	C	4.857e^-4	0.93	SYNONYMOUS_CODING CG15877 UPSTREAM CG45186 DOWNSTREAM CG9004
3R	23944859	3R_23944859_SNP [dm3] 3R_28119137_SNP [dm6]	C	G	4.861e^-4	0.93	INTERGENIC
2L	14604508	2L_14604508_SNP [dm3] 2L_14604508_SNP [dm6]	T	A	4.868e^-4	0.93	SYNONYMOUS_CODING osp	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	17938717	3R_17938717_INS [dm3] 3R_22112995_INS [dm6]	A	AGAATAGATACGA...	4.869e^-4	0.93	UPSTREAM Ir94a INTERGENIC
2R	7602270	2R_7602270_SNP [dm3] 2R_11714765_SNP [dm6]	T	A	4.874e^-4	0.93	INTRON pyr
3R	21742476	3R_21742476_SNP [dm3] 3R_25916754_SNP [dm6]	C	A	4.890e^-4	0.93	SYNONYMOUS_CODING CG42235 INTRON CG42235
3L	11026862	3L_11026862_SNP [dm3] 3L_11033762_SNP [dm6]	G	T	4.893e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
X	20458901	X_20458901_SNP [dm3] X_20587874_SNP [dm6]	C	T	4.951e^-4	0.93	INTERGENIC
2L	13677072	2L_13677072_DEL [dm3] 2L_13677072_DEL [dm6]	TCAT	T	4.953e^-4	0.93	UTR_3_PRIME CG31814 DOWNSTREAM CG31814
X	12757806	X_12757806_SNP [dm3] X_12863773_SNP [dm6]	G	T	4.958e^-4	0.93	INTRON Pde9
3L	17249904	3L_17249904_SNP [dm3] 3L_17256804_SNP [dm6]	C	T	4.981e^-4	0.93	INTRON CR43870
4	718910	4_718910_SNP [dm3] 4_698284_SNP [dm6]	C	A	4.999e^-4	0.93	INTRON ey	TF binding site BDTNP1_TFBS_dl
2L	10030120	2L_10030120_SNP [dm3] 2L_10030120_SNP [dm6]	T	C	5.004e^-4	0.93	DOWNSTREAM CG13127 INTERGENIC
2R	14489661	2R_14489661_SNP [dm3] 2R_18602156_SNP [dm6]	G	A	5.026e^-4	0.93	INTRON GEFmeso
X	19877488	X_19877488_SNP [dm3] X_19983455_SNP [dm6]	G	C	5.039e^-4	0.93	INTERGENIC
2R	7151509	2R_7151509_SNP [dm3] 2R_11264004_SNP [dm6]	A	G	5.054e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
X	4525180	X_4525180_SNP [dm3] X_4631147_SNP [dm6]	T	C	5.061e^-4	0.93	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2L	4610349	2L_4610349_SNP [dm3] 2L_4610349_SNP [dm6]	T	A	5.063e^-4	0.93	INTRON dp
2R	7550804	2R_7550804_SNP [dm3] 2R_11663299_SNP [dm6]	T	G	5.082e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7550839	2R_7550839_INS [dm3] 2R_11663334_INS [dm6]	T	TT	5.082e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	7550848	2R_7550848_SNP [dm3] 2R_11663343_SNP [dm6]	C	G	5.082e^-4	0.93	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	15297117	3L_15297117_SNP [dm3] 3L_15304017_SNP [dm6]	A	C	5.085e^-4	0.93	UPSTREAM CG7255 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15297167	3L_15297167_SNP [dm3] 3L_15304067_SNP [dm6]	T	G	5.085e^-4	0.93	UPSTREAM CG7255 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	10126589	2L_10126589_SNP [dm3] 2L_10126589_SNP [dm6]	C	T	5.092e^-4	0.93	DOWNSTREAM CG34109 INTRON CG44153
3R	18893095	3R_18893095_SNP [dm3] 3R_23067373_SNP [dm6]	C	A	5.104e^-4	0.93	UPSTREAM CG17111 INTERGENIC
3L	9033187	3L_9033187_SNP [dm3] 3L_9040087_SNP [dm6]	G	A	5.136e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	15543574	X_15543574_SNP [dm3] X_15649541_SNP [dm6]	C	G	5.141e^-4	0.93	INTERGENIC
X	15543577	X_15543577_DEL [dm3] X_15649544_DEL [dm6]	CCCCAAAAAT	G	5.141e^-4	0.93	INTERGENIC
X	15543612	X_15543612_SNP [dm3] X_15649579_SNP [dm6]	G	A	5.141e^-4	0.93	INTERGENIC
X	15543623	X_15543623_SNP [dm3] X_15649590_SNP [dm6]	T	A	5.141e^-4	0.93	INTERGENIC
X	15543670	X_15543670_SNP [dm3] X_15649637_SNP [dm6]	C	T	5.141e^-4	0.93	INTERGENIC
X	15543732	X_15543732_DEL [dm3] X_15649699_DEL [dm6]	GTATTG	G	5.141e^-4	0.93	INTERGENIC
X	4813855	X_4813855_SNP [dm3] X_4919822_SNP [dm6]	C	A	5.141e^-4	0.93	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	4813882	X_4813882_SNP [dm3] X_4919849_SNP [dm6]	A	C	5.141e^-4	0.93	INTRON CG6903	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	11589781	2L_11589781_SNP [dm3] 2L_11589781_SNP [dm6]	C	T	5.147e^-4	0.93	DOWNSTREAM CR44496 INTRON kek2
X	14505580	X_14505580_SNP [dm3] X_14611547_SNP [dm6]	A	T	5.152e^-4	0.93	INTRON NetA	TF binding site mE1_TFBS_inv
X	19877360	X_19877360_SNP [dm3] X_19983327_SNP [dm6]	T	G	5.153e^-4	0.93	INTERGENIC
3L	2375597	3L_2375597_SNP [dm3] 3L_2375597_SNP [dm6]	G	A	5.161e^-4	0.93	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877	TF binding site mE1_TFBS_sens
3L	2376069	3L_2376069_SNP [dm3] 3L_2376069_SNP [dm6]	C	T	5.161e^-4	0.93	SYNONYMOUS_CODING CG9004 DOWNSTREAM CG15877
3L	2564264	3L_2564264_SNP [dm3] 3L_2564264_SNP [dm6]	T	A	5.167e^-4	0.93	INTRON msn
3L	16138055	3L_16138055_DEL [dm3] 3L_16144955_DEL [dm6]	TT	T	5.179e^-4	0.93	UPSTREAM CG32152 & 1 other INTRON CG5151
2L	4201855	2L_4201855_SNP [dm3] 2L_4201855_SNP [dm6]	T	G	5.182e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
X	2680503	X_2680503_SNP [dm3] X_2786470_SNP [dm6]	A	C	5.213e^-4	0.93	INTRON kirre & 1 other
X	2680534	X_2680534_SNP [dm3] X_2786501_SNP [dm6]	C	T	5.213e^-4	0.93	INTRON kirre & 1 other
3L	2375222	3L_2375222_SNP [dm3] 3L_2375222_SNP [dm6]	C	T	5.217e^-4	0.93	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	2375223	3L_2375223_SNP [dm3] 3L_2375223_SNP [dm6]	C	T	5.217e^-4	0.93	SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	19720688	2L_19720688_SNP [dm3] 2L_19720688_SNP [dm6]	T	C	5.218e^-4	0.93	INTRON Lar
X	19878876	X_19878876_INS [dm3] X_19984843_INS [dm6]	T	TTATCTTCC	5.221e^-4	0.93	INTERGENIC
2L	17609854	2L_17609854_SNP [dm3] 2L_17609854_SNP [dm6]	A	G	5.230e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	18604467	2R_18604467_SNP [dm3] 2R_22716962_SNP [dm6]	T	C	5.259e^-4	0.93	SYNONYMOUS_CODING CG30268 DOWNSTREAM jbug
2L	2597133	2L_2597133_SNP [dm3] 2L_2597133_SNP [dm6]	A	T	5.263e^-4	0.93	INTERGENIC
2L	2557317	2L_2557317_SNP [dm3] 2L_2557317_SNP [dm6]	T	A	5.265e^-4	0.93	INTERGENIC
X	20517013	X_20517013_SNP [dm3] X_20645986_SNP [dm6]	A	C	5.280e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	12411371	X_12411371_SNP [dm3] X_12517338_SNP [dm6]	T	A	5.286e^-4	0.93	UTR_3_PRIME CG43921 DOWNSTREAM CG43921 & 1 other	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	19548646	3R_19548646_SNP [dm3] 3R_23722924_SNP [dm6]	A	T	5.304e^-4	0.93	UPSTREAM CG10365 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	4525538	X_4525538_SNP [dm3] X_4631505_SNP [dm6]	A	G	5.309e^-4	0.93	UTR_3_PRIME CG12179 UPSTREAM CG12184
3L	12198589	3L_12198589_SNP [dm3] 3L_12205489_SNP [dm6]	A	T	5.314e^-4	0.93	DOWNSTREAM app INTRON CG5626
3R	14458386	3R_14458386_SNP [dm3] 3R_18632664_SNP [dm6]	T	C	5.318e^-4	0.93	INTRON qin & 1 other
2R	13903800	2R_13903800_INS [dm3] 2R_18016295_INS [dm6]	T	TT	5.318e^-4	0.93	INTERGENIC
2L	5891128	2L_5891128_SNP [dm3] 2L_5891128_SNP [dm6]	A	C	5.327e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3R	22987083	3R_22987083_SNP [dm3] 3R_27161361_SNP [dm6]	A	T	5.327e^-4	0.93	SYNONYMOUS_CODING CG5909
X	16106667	X_16106667_SNP [dm3] X_16212634_SNP [dm6]	T	G	5.329e^-4	0.93	SYNONYMOUS_CODING disco	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12621953	3L_12621953_SNP [dm3] 3L_12628853_SNP [dm6]	C	T	5.350e^-4	0.93	INTRON CR32111
X	5815539	X_5815539_SNP [dm3] X_5921506_SNP [dm6]	C	G	5.359e^-4	0.93	INTRON CG3726
3L	12184542	3L_12184542_SNP [dm3] 3L_12191442_SNP [dm6]	A	C	5.365e^-4	0.93	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12184572	3L_12184572_SNP [dm3] 3L_12191472_SNP [dm6]	A	T	5.365e^-4	0.93	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12184710	3L_12184710_SNP [dm3] 3L_12191610_SNP [dm6]	T	C	5.365e^-4	0.93	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_sens
3L	1270666	3L_1270666_SNP [dm3] 3L_1270666_SNP [dm6]	A	G	5.370e^-4	0.93	INTRON CG9134
X	13631378	X_13631378_SNP [dm3] X_13737345_SNP [dm6]	G	A	5.372e^-4	0.93	SYNONYMOUS_CODING Grip91 UPSTREAM CG11134	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	20464586	X_20464586_SNP [dm3] X_20593559_SNP [dm6]	G	A	5.374e^-4	0.93	SYNONYMOUS_CODING RunxA
3L	20353468	3L_20353468_SNP [dm3] 3L_20360368_SNP [dm6]	A	G	5.383e^-4	0.93	SYNONYMOUS_CODING DNApol-alpha60 DOWNSTREAM CG5665	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	21273723	3R_21273723_SNP [dm3] 3R_25448001_SNP [dm6]	G	A	5.407e^-4	0.93	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
3L	8802442	3L_8802442_SNP [dm3] 3L_8809342_SNP [dm6]	G	C	5.421e^-4	0.93	DOWNSTREAM CG32024 & 1 other INTERGENIC
2R	12130555	2R_12130555_SNP [dm3] 2R_16243050_SNP [dm6]	A	G	5.427e^-4	0.93	DOWNSTREAM CngA INTERGENIC
2R	12130559	2R_12130559_SNP [dm3] 2R_16243054_SNP [dm6]	T	C	5.427e^-4	0.93	DOWNSTREAM CngA INTERGENIC
3R	25732414	3R_25732414_SNP [dm3] 3R_29906692_SNP [dm6]	C	A	5.428e^-4	0.93	DOWNSTREAM CG15515 INTERGENIC
2L	13314259	2L_13314259_SNP [dm3] 2L_13314259_SNP [dm6]	T	A	5.436e^-4	0.93	INTRON CG43778
2L	13314287	2L_13314287_SNP [dm3] 2L_13314287_SNP [dm6]	G	T	5.436e^-4	0.93	INTRON CG43778
2L	13314319	2L_13314319_SNP [dm3] 2L_13314319_SNP [dm6]	C	A	5.436e^-4	0.93	INTRON CG43778
2L	13314325	2L_13314325_SNP [dm3] 2L_13314325_SNP [dm6]	G	C	5.436e^-4	0.93	INTRON CG43778
2L	11138429	2L_11138429_SNP [dm3] 2L_11138429_SNP [dm6]	T	C	5.441e^-4	0.93	SYNONYMOUS_CODING hgo DOWNSTREAM Gyc32E
2L	13135161	2L_13135161_SNP [dm3] 2L_13135161_SNP [dm6]	C	A	5.441e^-4	0.93	DOWNSTREAM CG5122 INTERGENIC
2L	10676639	2L_10676639_SNP [dm3] 2L_10676639_SNP [dm6]	T	C	5.449e^-4	0.93	UPSTREAM CG17104 INTERGENIC
2R	21079280	2R_21079280_SNP [dm3] 2R_25191757_SNP [dm6]	A	T	5.460e^-4	0.93	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17125689	2L_17125689_SNP [dm3] 2L_17125689_SNP [dm6]	T	G	5.463e^-4	0.93	NON_SYNONYMOUS_CODING CG31784
3L	11634605	3L_11634605_SNP [dm3] 3L_11641505_SNP [dm6]	C	T	5.468e^-4	0.93	SYNONYMOUS_CODING CG32091	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16321397	3R_16321397_SNP [dm3] 3R_20495675_SNP [dm6]	G	A	5.497e^-4	0.93	INTERGENIC
3L	4025468	3L_4025468_SNP [dm3] 3L_4025468_SNP [dm6]	G	A	5.502e^-4	0.93	UTR_5_PRIME CG11594 UPSTREAM CG11594 INTRON CG11594
2R	16203933	2R_16203933_SNP [dm3] 2R_20316428_SNP [dm6]	A	G	5.509e^-4	0.93	UPSTREAM CG13871 DOWNSTREAM CR44642 INTRON CG13868
2L	15844465	2L_15844465_SNP [dm3] 2L_15844465_SNP [dm6]	C	T	5.522e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_Kr
2R	20585045	2R_20585045_SNP [dm3] 2R_24697522_SNP [dm6]	A	G	5.528e^-4	0.93	UTR_3_PRIME Mid1
3L	7266531	3L_7266531_SNP [dm3] 3L_7273431_SNP [dm6]	G	C	5.534e^-4	0.93	SYNONYMOUS_CODING unc-13-4A	TF binding site mE1_TFBS_cad
3L	2382959	3L_2382959_SNP [dm3] 3L_2382959_SNP [dm6]	A	G	5.551e^-4	0.93	INTRON CG45186	TF binding site mE1_TFBS_sens
2L	17602378	2L_17602378_SNP [dm3] 2L_17602378_SNP [dm6]	T	A	5.561e^-4	0.93	SYNONYMOUS_CODING Sytalpha
3L	12505180	3L_12505180_SNP [dm3] 3L_12512080_SNP [dm6]	A	T	5.567e^-4	0.93	SYNONYMOUS_CODING sti
3L	12505228	3L_12505228_SNP [dm3] 3L_12512128_SNP [dm6]	C	G	5.567e^-4	0.93	SYNONYMOUS_CODING sti
2L	4201844	2L_4201844_SNP [dm3] 2L_4201844_SNP [dm6]	A	G	5.578e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201848	2L_4201848_SNP [dm3] 2L_4201848_SNP [dm6]	C	A	5.578e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201850	2L_4201850_SNP [dm3] 2L_4201850_SNP [dm6]	A	T	5.578e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201851	2L_4201851_SNP [dm3] 2L_4201851_SNP [dm6]	T	G	5.578e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201853	2L_4201853_SNP [dm3] 2L_4201853_SNP [dm6]	A	T	5.578e^-4	0.93	INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201858	2L_4201858_SNP [dm3] 2L_4201858_SNP [dm6]	G	A	5.578e^-4	0.93	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
2L	4201859	2L_4201859_SNP [dm3] 2L_4201859_SNP [dm6]	A	G	5.578e^-4	0.93	SPLICE_SITE_REGION ft INTRON ft	TF binding site mE1_TFBS_chinmo
3L	606474	3L_606474_SNP [dm3] 3L_606474_SNP [dm6]	G	A	5.591e^-4	0.93	SYNONYMOUS_CODING Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	16824719	3R_16824719_SNP [dm3] 3R_20998997_SNP [dm6]	A	C	5.592e^-4	0.93	INTRON Calx
3L	18193560	3L_18193560_SNP [dm3] 3L_18200460_SNP [dm6]	C	T	5.598e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	18193570	3L_18193570_SNP [dm3] 3L_18200470_SNP [dm6]	T	C	5.598e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_prd
3L	8661273	3L_8661273_SNP [dm3] 3L_8668173_SNP [dm6]	C	T	5.603e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
3L	606501	3L_606501_SNP [dm3] 3L_606501_SNP [dm6]	T	C	5.614e^-4	0.93	UTR_5_PRIME Reg-2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	12773056	3L_12773056_SNP [dm3] 3L_12779956_SNP [dm6]	T	G	5.633e^-4	0.93	NON_SYNONYMOUS_CODING CG10969	TF binding site mE1_TFBS_sens
3L	18447511	3L_18447511_SNP [dm3] 3L_18454411_SNP [dm6]	G	T	5.634e^-4	0.93	INTERGENIC
3L	3754702	3L_3754702_SNP [dm3] 3L_3754702_SNP [dm6]	C	G	5.641e^-4	0.93	NON_SYNONYMOUS_CODING ppk27 INTRON CG32264
2L	7962495	2L_7962495_SNP [dm3] 2L_7962495_SNP [dm6]	C	T	5.646e^-4	0.93	INTRON Snoo
3L	5185597	3L_5185597_SNP [dm3] 3L_5192497_SNP [dm6]	A	G	5.655e^-4	0.93	INTRON shep
2L	14180476	2L_14180476_SNP [dm3] 2L_14180476_SNP [dm6]	C	A	5.656e^-4	0.93	UTR_5_PRIME CG43333	TF binding site mE1_TFBS_Trl
3R	19887259	3R_19887259_SNP [dm3] 3R_24061537_SNP [dm6]	G	A	5.658e^-4	0.93	SYNONYMOUS_CODING SMC1
3L	11180528	3L_11180528_SNP [dm3] 3L_11187428_SNP [dm6]	C	T	5.676e^-4	0.93	INTRON GlcAT-P
3R	10899307	3R_10899307_SNP [dm3] 3R_15073585_SNP [dm6]	C	G	5.683e^-4	0.93	INTRON dpr9
3R	16353683	3R_16353683_SNP [dm3] 3R_20527961_SNP [dm6]	G	T	5.689e^-4	0.93	INTERGENIC
3R	22460193	3R_22460193_SNP [dm3] 3R_26634471_SNP [dm6]	T	C	5.692e^-4	0.93	SYNONYMOUS_CODING TwdlH UPSTREAM TwdlR	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	13631414	X_13631414_SNP [dm3] X_13737381_SNP [dm6]	C	T	5.697e^-4	0.93	SYNONYMOUS_CODING Grip91 UPSTREAM CG11134	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	25656918	3R_25656918_SNP [dm3] 3R_29831196_SNP [dm6]	A	G	5.703e^-4	0.93	INTRON Atg16
3R	25657833	3R_25657833_SNP [dm3] 3R_29832111_SNP [dm6]	T	C	5.703e^-4	0.93	SYNONYMOUS_CODING Atg16
3R	25658596	3R_25658596_SNP [dm3] 3R_29832874_SNP [dm6]	A	T	5.703e^-4	0.93	INTRON Atg16
3R	25661059	3R_25661059_SNP [dm3] 3R_29835337_SNP [dm6]	C	T	5.703e^-4	0.93	UPSTREAM CG15510 & 1 other DOWNSTREAM CG42592 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	25661407	3R_25661407_SNP [dm3] 3R_29835685_SNP [dm6]	T	C	5.703e^-4	0.93	UTR_3_PRIME CG42592 UPSTREAM CG15510 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
X	8338074	X_8338074_SNP [dm3] X_8444041_SNP [dm6]	T	A	5.703e^-4	0.93	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	20394459	X_20394459_INS [dm3] X_20523432_INS [dm6]	A	ATA	5.716e^-4	0.93	INTRON Tak1
2R	17399839	2R_17399839_SNP [dm3] 2R_21512334_SNP [dm6]	T	C	5.719e^-4	0.93	INTRON MESK2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2724075	3L_2724075_SNP [dm3] 3L_2724075_SNP [dm6]	A	G	5.721e^-4	0.93	INTRON Mrtf
3L	9516002	3L_9516002_SNP [dm3] 3L_9522902_SNP [dm6]	T	G	5.732e^-4	0.93	INTRON CG33700
X	11325656	X_11325656_SNP [dm3] X_11431623_SNP [dm6]	A	G	5.739e^-4	0.93	UTR_3_PRIME Evi5
2L	13744065	2L_13744065_SNP [dm3] 2L_13744065_SNP [dm6]	G	T	5.742e^-4	0.93	INTERGENIC
3L	11934831	3L_11934831_SNP [dm3] 3L_11941731_SNP [dm6]	T	C	5.744e^-4	0.93	UPSTREAM Rpt4R INTERGENIC
2L	6129473	2L_6129473_SNP [dm3] 2L_6129473_SNP [dm6]	G	C	5.747e^-4	0.93	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6129559	2L_6129559_SNP [dm3] 2L_6129559_SNP [dm6]	G	A	5.747e^-4	0.93	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	12431552	X_12431552_SNP [dm3] X_12537519_SNP [dm6]	C	T	5.747e^-4	0.93	INTRON CG43921
2L	9712536	2L_9712536_INS [dm3] 2L_9712536_INS [dm6]	T	TTT	5.747e^-4	0.93	UTR_3_PRIME Nckx30C DOWNSTREAM Nckx30C
3L	18110549	3L_18110549_SNP [dm3] 3L_18117449_SNP [dm6]	C	A	5.764e^-4	0.93	UTR_3_PRIME CG32195 INTRON CG7341
3R	16091277	3R_16091277_SNP [dm3] 3R_20265555_SNP [dm6]	T	A	5.795e^-4	0.93	INTRON cic
3R	16091284	3R_16091284_SNP [dm3] 3R_20265562_SNP [dm6]	G	T	5.795e^-4	0.93	INTRON cic
3R	16091314	3R_16091314_SNP [dm3] 3R_20265592_SNP [dm6]	A	T	5.795e^-4	0.93	INTRON cic
3R	13028864	3R_13028864_SNP [dm3] 3R_17203142_SNP [dm6]	T	C	5.807e^-4	0.93	INTERGENIC
3L	22159596	3L_22159596_SNP [dm3] 3L_22166496_SNP [dm6]	A	T	5.829e^-4	0.93	INTRON olf413
X	8759087	X_8759087_SNP [dm3] X_8865054_SNP [dm6]	T	G	5.840e^-4	0.93	INTRON CG12075
X	8759090	X_8759090_SNP [dm3] X_8865057_SNP [dm6]	A	T	5.840e^-4	0.93	INTRON CG12075
X	8759091	X_8759091_SNP [dm3] X_8865058_SNP [dm6]	T	A	5.840e^-4	0.93	INTRON CG12075
X	19878808	X_19878808_SNP [dm3] X_19984775_SNP [dm6]	C	T	5.848e^-4	0.93	INTERGENIC
X	19878817	X_19878817_SNP [dm3] X_19984784_SNP [dm6]	T	C	5.848e^-4	0.93	INTERGENIC
X	19878823	X_19878823_SNP [dm3] X_19984790_SNP [dm6]	C	A	5.848e^-4	0.93	INTERGENIC
X	19878825	X_19878825_SNP [dm3] X_19984792_SNP [dm6]	A	T	5.848e^-4	0.93	INTERGENIC
X	19878827	X_19878827_DEL [dm3] X_19984794_DEL [dm6]	ACTTCCGCTTGTCCTTCTA...	T	5.848e^-4	0.93	INTERGENIC
3L	7013420	3L_7013420_SNP [dm3] 3L_7020320_SNP [dm6]	C	T	5.855e^-4	0.93	INTRON Mp
2L	14798131	2L_14798131_SNP [dm3] 2L_14798131_SNP [dm6]	G	A	5.856e^-4	0.93	INTERGENIC
2L	5659656	2L_5659656_SNP [dm3] 2L_5659656_SNP [dm6]	G	A	5.866e^-4	0.93	INTERGENIC
3L	10664130	3L_10664130_SNP [dm3] 3L_10671030_SNP [dm6]	G	T	5.868e^-4	0.93	INTRON simj	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	17353100	2R_17353100_SNP [dm3] 2R_21465595_SNP [dm6]	T	A	5.869e^-4	0.93	INTRON Sdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	2683676	3L_2683676_SNP [dm3] 3L_2683676_SNP [dm6]	A	G	5.877e^-4	0.93	INTRON Fife
3R	18581558	3R_18581558_SNP [dm3] 3R_22755836_SNP [dm6]	A	T	5.886e^-4	0.93	INTRON Usp12-46 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	15047265	2L_15047265_SNP [dm3] 2L_15047265_SNP [dm6]	G	T	5.895e^-4	0.93	SYNONYMOUS_CODING ck	TF binding site mE1_TFBS_cad
3L	9543088	3L_9543088_SNP [dm3] 3L_9549988_SNP [dm6]	T	C	5.908e^-4	0.93	INTRON CG42673
X	14797012	X_14797012_SNP [dm3] X_14902979_SNP [dm6]	T	C	5.940e^-4	0.93	INTRON Flo2 & 1 other
2L	4228911	2L_4228911_SNP [dm3] 2L_4228911_SNP [dm6]	C	T	5.953e^-4	0.93	UPSTREAM CR44608 DOWNSTREAM RpL40 INTERGENIC
3L	10861731	3L_10861731_SNP [dm3] 3L_10868631_SNP [dm6]	T	A	5.953e^-4	0.93	INTRON tna
X	7592013	X_7592013_SNP [dm3] X_7697980_SNP [dm6]	A	G	5.953e^-4	0.93	INTRON CHES-1-like	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
X	12890315	X_12890315_SNP [dm3] X_12996282_SNP [dm6]	C	G	5.959e^-4	0.93	INTRON rad	TF binding site BDTNP1_TFBS_twi
3R	19623507	3R_19623507_SNP [dm3] 3R_23797785_SNP [dm6]	T	C	5.962e^-4	0.93	SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	22169345	3L_22169345_SNP [dm3] 3L_22176245_SNP [dm6]	A	C	5.983e^-4	0.93	INTRON olf413	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_Ubx
3R	24825643	3R_24825643_SNP [dm3] 3R_28999921_SNP [dm6]	C	A	5.984e^-4	0.93	INTRON wat
3L	2584105	3L_2584105_SNP [dm3] 3L_2584105_SNP [dm6]	C	A	5.997e^-4	0.93	INTRON msn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	6703265	3L_6703265_SNP [dm3] 3L_6710165_SNP [dm6]	T	A	5.997e^-4	0.93	INTERGENIC
3L	12128223	3L_12128223_SNP [dm3] 3L_12135123_SNP [dm6]	A	G	6.003e^-4	0.93	SYNONYMOUS_CODING CG5645	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	21096969	X_21096969_SNP [dm3] X_21225942_SNP [dm6]	T	C	6.007e^-4	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
X	21096973	X_21096973_SNP [dm3] X_21225946_SNP [dm6]	G	A	6.007e^-4	0.93	INTRON CG32521	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16667463	2R_16667463_SNP [dm3] 2R_20779958_SNP [dm6]	C	T	6.011e^-4	0.93	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
2R	16667474	2R_16667474_INS [dm3] 2R_20779969_INS [dm6]	A	AAG	6.011e^-4	0.93	UPSTREAM CG43711 DOWNSTREAM CR44666 INTERGENIC
X	10274045	X_10274045_SNP [dm3] X_10380012_SNP [dm6]	C	T	6.021e^-4	0.93	SYNONYMOUS_CODING CG32681 INTRON CG17841
3R	12346343	3R_12346343_SNP [dm3] 3R_16520621_SNP [dm6]	T	A	6.027e^-4	0.93	INTRON CG42342	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4081695	3R_4081695_SNP [dm3] 3R_8255973_SNP [dm6]	C	T	6.030e^-4	0.93	INTRON mtg
3R	6953259	3R_6953259_SNP [dm3] 3R_11127537_SNP [dm6]	A	T	6.033e^-4	0.93	NON_SYNONYMOUS_CODING Ugt86Dd
2L	19224398	2L_19224398_SNP [dm3] 2L_19224398_SNP [dm6]	T	C	6.035e^-4	0.93	INTERGENIC
2L	13309647	2L_13309647_SNP [dm3] 2L_13309647_SNP [dm6]	G	A	6.046e^-4	0.93	SYNONYMOUS_CODING CG43778 UTR_5_PRIME CG43778	TF binding site mE1_TFBS_chinmo
2L	13314284	2L_13314284_SNP [dm3] 2L_13314284_SNP [dm6]	G	A	6.060e^-4	0.93	INTRON CG43778
X	18725796	X_18725796_SNP [dm3] X_18831763_SNP [dm6]	T	C	6.061e^-4	0.93	NON_SYNONYMOUS_CODING CG7101 UPSTREAM Pvf1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23652818	3R_23652818_SNP [dm3] 3R_27827096_SNP [dm6]	G	T	6.073e^-4	0.93	INTRON CG34353
3L	6770171	3L_6770171_SNP [dm3] 3L_6777071_SNP [dm6]	C	T	6.101e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	12109707	2R_12109707_SNP [dm3] 2R_16222202_SNP [dm6]	C	T	6.102e^-4	0.93	SYNONYMOUS_CODING CG7798 UPSTREAM mrj EXON CR43898	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	10526350	2L_10526350_SNP [dm3] 2L_10526350_SNP [dm6]	C	T	6.110e^-4	0.93	INTERGENIC
2R	12668118	2R_12668118_SNP [dm3] 2R_16780613_SNP [dm6]	A	T	6.112e^-4	0.93	SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	12668119	2R_12668119_SNP [dm3] 2R_16780614_SNP [dm6]	G	T	6.112e^-4	0.93	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2R	12668173	2R_12668173_SNP [dm3] 2R_16780668_SNP [dm6]	C	T	6.112e^-4	0.93	NON_SYNONYMOUS_CODING resilin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	17199119	3R_17199119_SNP [dm3] 3R_21373397_SNP [dm6]	G	A	6.119e^-4	0.93	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
X	8814240	X_8814240_SNP [dm3] X_8920207_SNP [dm6]	G	T	6.119e^-4	0.93	INTRON rdgA & 1 other
3L	2653035	3L_2653035_SNP [dm3] 3L_2653035_SNP [dm6]	A	C	6.135e^-4	0.93	NON_SYNONYMOUS_CODING Snup UTR_5_PRIME CG42304 UPSTREAM CG42304	TF binding site mE1_TFBS_cad
2L	19834985	2L_19834985_SNP [dm3] 2L_19834985_SNP [dm6]	C	T	6.142e^-4	0.93	INTRON sick
3L	12184341	3L_12184341_SNP [dm3] 3L_12191241_SNP [dm6]	A	G	6.143e^-4	0.93	SYNONYMOUS_CODING Est-P DOWNSTREAM Est-6 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13971013	3R_13971013_DEL [dm3] 3R_18145291_DEL [dm6]	ATAAGCCGAGCGAAACCGGC...	A	6.148e^-4	0.93	INTERGENIC
2L	13434793	2L_13434793_SNP [dm3] 2L_13434793_SNP [dm6]	C	G	6.156e^-4	0.93	UPSTREAM Tehao INTRON CG42784	TF binding site mE1_TFBS_cad
2L	4091318	2L_4091318_SNP [dm3] 2L_4091318_SNP [dm6]	G	A	6.178e^-4	0.93	INTRON ed
2L	4091371	2L_4091371_SNP [dm3] 2L_4091371_SNP [dm6]	T	C	6.178e^-4	0.93	INTRON ed
3R	15492289	3R_15492289_SNP [dm3] 3R_19666567_SNP [dm6]	T	C	6.187e^-4	0.93	INTRON CG7432
3L	11026843	3L_11026843_SNP [dm3] 3L_11033743_SNP [dm6]	C	T	6.200e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14936982	2L_14936982_SNP [dm3] 2L_14936982_SNP [dm6]	T	A	6.210e^-4	0.93	INTRON CG42313
2R	18914078	2R_18914078_SNP [dm3] 2R_23026555_SNP [dm6]	T	C	6.235e^-4	0.93	INTRON twi & 1 other
X	14520920	X_14520920_SNP [dm3] X_14626887_SNP [dm6]	A	G	6.242e^-4	0.93	INTRON NetA	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	19878855	X_19878855_SNP [dm3] X_19984822_SNP [dm6]	C	G	6.244e^-4	0.93	INTERGENIC
3R	16824876	3R_16824876_SNP [dm3] 3R_20999154_SNP [dm6]	C	T	6.256e^-4	0.93	INTRON Calx
3L	11063451	3L_11063451_SNP [dm3] 3L_11070351_SNP [dm6]	C	T	6.263e^-4	0.93	UPSTREAM Mocs1 & 1 other INTERGENIC
2L	15760009	2L_15760009_SNP [dm3] 2L_15760009_SNP [dm6]	C	T	6.266e^-4	0.93	INTRON Gli	TF binding site mE1_TFBS_cad
3R	17889586	3R_17889586_SNP [dm3] 3R_22063864_SNP [dm6]	T	A	6.276e^-4	0.93	INTRON how
X	16141657	X_16141657_SNP [dm3] X_16247624_SNP [dm6]	A	C	6.293e^-4	0.93	INTERGENIC
3R	23147790	3R_23147790_SNP [dm3] 3R_27322068_SNP [dm6]	T	A	6.301e^-4	0.93	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4661000	2R_4661000_SNP [dm3] 2R_8773495_SNP [dm6]	C	T	6.314e^-4	0.93	INTERGENIC
2R	9262794	2R_9262794_SNP [dm3] 2R_13375289_SNP [dm6]	G	A	6.316e^-4	0.93	DOWNSTREAM CG10814 INTERGENIC
X	7591834	X_7591834_SNP [dm3] X_7697801_SNP [dm6]	C	A	6.317e^-4	0.93	INTRON CHES-1-like	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16683146	2R_16683146_SNP [dm3] 2R_20795641_SNP [dm6]	T	A	6.319e^-4	0.93	INTERGENIC
3L	10861800	3L_10861800_SNP [dm3] 3L_10868700_SNP [dm6]	T	C	6.328e^-4	0.93	INTRON tna
3L	10861820	3L_10861820_SNP [dm3] 3L_10868720_SNP [dm6]	A	G	6.328e^-4	0.93	INTRON tna
2R	20585047	2R_20585047_SNP [dm3] 2R_24697524_SNP [dm6]	A	T	6.332e^-4	0.93	UTR_3_PRIME Mid1
2L	7984302	2L_7984302_SNP [dm3] 2L_7984302_SNP [dm6]	G	A	6.337e^-4	0.93	UPSTREAM Snoo & 1 other INTRON CG7231	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	20396699	X_20396699_SNP [dm3] X_20525672_SNP [dm6]	C	A	6.339e^-4	0.93	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
X	20396748	X_20396748_SNP [dm3] X_20525721_SNP [dm6]	T	C	6.339e^-4	0.93	UPSTREAM Tak1 INTERGENIC	TF binding site mE1_TFBS_zfh1
3R	4908858	3R_4908858_SNP [dm3] 3R_9083136_SNP [dm6]	C	A	6.342e^-4	0.93	INTRON pum
3R	25166306	3R_25166306_SNP [dm3] 3R_29340584_SNP [dm6]	A	G	6.356e^-4	0.93	INTERGENIC
2L	14275709	2L_14275709_SNP [dm3] 2L_14275709_SNP [dm6]	A	G	6.358e^-4	0.93	INTRON wb & 1 other
3L	8666442	3L_8666442_SNP [dm3] 3L_8673342_SNP [dm6]	T	C	6.364e^-4	0.93	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	2789715	3R_2789715_SNP [dm3] 3R_6963993_SNP [dm6]	G	A	6.366e^-4	0.93	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18725855	X_18725855_SNP [dm3] X_18831822_SNP [dm6]	C	T	6.373e^-4	0.93	UTR_3_PRIME CG7101 UPSTREAM Pvf1	TF binding site mE1_TFBS_cad
2R	7385797	2R_7385797_SNP [dm3] 2R_11498292_SNP [dm6]	T	C	6.373e^-4	0.93	INTRON inv
3L	8659166	3L_8659166_SNP [dm3] 3L_8666066_SNP [dm6]	T	C	6.374e^-4	0.93	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	18907023	3R_18907023_SNP [dm3] 3R_23081301_SNP [dm6]	T	G	6.374e^-4	0.93	INTRON CG13830	TF binding site mE1_TFBS_cad
3R	18907025	3R_18907025_SNP [dm3] 3R_23081303_SNP [dm6]	G	A	6.374e^-4	0.93	INTRON CG13830	TF binding site mE1_TFBS_cad
X	11853527	X_11853527_SNP [dm3] X_11959494_SNP [dm6]	C	G	6.374e^-4	0.93	INTRON cac
X	8768200	X_8768200_SNP [dm3] X_8874167_SNP [dm6]	A	T	6.374e^-4	0.93	INTRON Moe
X	15543590	X_15543590_SNP [dm3] X_15649557_SNP [dm6]	G	T	6.374e^-4	0.93	INTERGENIC
X	15543647	X_15543647_DEL [dm3] X_15649614_DEL [dm6]	TCAAACTAT	T	6.374e^-4	0.93	INTERGENIC
X	15543671	X_15543671_SNP [dm3] X_15649638_SNP [dm6]	C	T	6.374e^-4	0.93	INTERGENIC
X	15543675	X_15543675_DEL [dm3] X_15649642_DEL [dm6]	AT	A	6.374e^-4	0.93	INTERGENIC
X	15543678	X_15543678_SNP [dm3] X_15649645_SNP [dm6]	A	C	6.374e^-4	0.93	INTERGENIC
X	15543685	X_15543685_SNP [dm3] X_15649652_SNP [dm6]	T	A	6.374e^-4	0.93	INTERGENIC
X	15543686	X_15543686_SNP [dm3] X_15649653_SNP [dm6]	A	T	6.374e^-4	0.93	INTERGENIC
X	15543701	X_15543701_SNP [dm3] X_15649668_SNP [dm6]	T	G	6.374e^-4	0.93	INTERGENIC
X	15543704	X_15543704_SNP [dm3] X_15649671_SNP [dm6]	G	T	6.374e^-4	0.93	INTERGENIC
X	15543712	X_15543712_SNP [dm3] X_15649679_SNP [dm6]	A	T	6.374e^-4	0.93	INTERGENIC
X	15543713	X_15543713_INS [dm3] X_15649680_INS [dm6]	C	CGATTGGCTAACGCATACCC...	6.374e^-4	0.93	INTERGENIC
X	15543715	X_15543715_SNP [dm3] X_15649682_SNP [dm6]	G	A	6.374e^-4	0.93	INTERGENIC
X	15543756	X_15543756_SNP [dm3] X_15649723_SNP [dm6]	A	T	6.374e^-4	0.93	INTERGENIC
X	15543757	X_15543757_SNP [dm3] X_15649724_SNP [dm6]	G	T	6.374e^-4	0.93	INTERGENIC
X	2681033	X_2681033_SNP [dm3] X_2787000_SNP [dm6]	A	G	6.376e^-4	0.93	INTRON kirre & 1 other
3R	13746969	3R_13746969_SNP [dm3] 3R_17921247_SNP [dm6]	A	T	6.383e^-4	0.93	UTR_5_PRIME cpo
3L	11186938	3L_11186938_SNP [dm3] 3L_11193838_SNP [dm6]	T	A	6.399e^-4	0.93	INTRON GlcAT-P
2R	18799744	2R_18799744_SNP [dm3] 2R_22912221_SNP [dm6]	G	T	6.406e^-4	0.93	NON_SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA
3R	25951604	3R_25951604_SNP [dm3] 3R_30125882_SNP [dm6]	G	A	6.409e^-4	0.93	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
2L	14196858	2L_14196858_SNP [dm3] 2L_14196858_SNP [dm6]	T	C	6.410e^-4	0.93	INTRON Dyrk2
2L	6949964	2L_6949964_SNP [dm3] 2L_6949964_SNP [dm6]	G	A	6.415e^-4	0.93	SYNONYMOUS_CODING Gas41 UPSTREAM SA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	12865484	3L_12865484_SNP [dm3] 3L_12872384_SNP [dm6]	G	A	6.417e^-4	0.93	INTERGENIC
3L	12865494	3L_12865494_INS [dm3] 3L_12872394_INS [dm6]	GA	CTT	6.417e^-4	0.93	INTERGENIC
X	2705456	X_2705456_SNP [dm3] X_2811423_SNP [dm6]	C	T	6.454e^-4	0.93	DOWNSTREAM CG12498 INTRON kirre
3L	12395474	3L_12395474_SNP [dm3] 3L_12402374_SNP [dm6]	G	T	6.482e^-4	0.93	UTR_3_PRIME CG32103 UPSTREAM Smyd4
3L	10861742	3L_10861742_SNP [dm3] 3L_10868642_SNP [dm6]	T	C	6.498e^-4	0.93	INTRON tna
3R	17217293	3R_17217293_SNP [dm3] 3R_21391571_SNP [dm6]	C	G	6.506e^-4	0.93	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z
3L	12208358	3L_12208358_SNP [dm3] 3L_12215258_SNP [dm6]	T	G	6.514e^-4	0.93	UPSTREAM app INTRON app	TF binding site mE1_TFBS_chinmo
3R	21365243	3R_21365243_SNP [dm3] 3R_25539521_SNP [dm6]	T	C	6.522e^-4	0.93	INTRON msi
3R	21365255	3R_21365255_DEL [dm3] 3R_25539533_DEL [dm6]	GGAGG	G	6.522e^-4	0.93	INTRON msi
2L	14781958	2L_14781958_SNP [dm3] 2L_14781958_SNP [dm6]	G	T	6.523e^-4	0.93	EXON CR15280
X	11773182	X_11773182_SNP [dm3] X_11879149_SNP [dm6]	A	G	6.525e^-4	0.93	SYNONYMOUS_CODING CG10353	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	20373651	X_20373651_SNP [dm3] X_20502624_SNP [dm6]	A	T	6.536e^-4	0.93	INTRON RhoGAP19D	TF binding site mE1_TFBS_HSA
3R	25535452	3R_25535452_DEL [dm3] 3R_29709730_DEL [dm6]	AAA	A	6.544e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	9535125	X_9535125_SNP [dm3] X_9641092_SNP [dm6]	T	C	6.549e^-4	0.93	UPSTREAM l_1_G0232 INTRON l_1_G0232	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	10581230	3R_10581230_SNP [dm3] 3R_14755508_SNP [dm6]	A	G	6.559e^-4	0.93	INTRON jvl
X	15263090	X_15263090_SNP [dm3] X_15369057_SNP [dm6]	G	T	6.559e^-4	0.93	INTRON acj6
2L	11697487	2L_11697487_SNP [dm3] 2L_11697487_SNP [dm6]	C	T	6.575e^-4	0.93	INTERGENIC	TF binding site mE1_TFBS_inv
3R	21273586	3R_21273586_SNP [dm3] 3R_25447864_SNP [dm6]	C	A	6.578e^-4	0.93	INTRON Fur1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
2L	11092279	2L_11092279_SNP [dm3] 2L_11092279_SNP [dm6]	A	G	6.587e^-4	0.93	SYNONYMOUS_CODING CG4705
2L	15762505	2L_15762505_SNP [dm3] 2L_15762505_SNP [dm6]	G	A	6.595e^-4	0.93	UTR_5_PRIME Gli UPSTREAM Gli INTRON Gli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	15890917	2R_15890917_SNP [dm3] 2R_20003412_SNP [dm6]	G	C	6.604e^-4	0.93	DOWNSTREAM CG16898 INTERGENIC
2L	5879744	2L_5879744_SNP [dm3] 2L_5879744_SNP [dm6]	C	A	6.606e^-4	0.93	UPSTREAM rau INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	11325602	X_11325602_SNP [dm3] X_11431569_SNP [dm6]	T	C	6.609e^-4	0.93	UTR_3_PRIME Evi5
3L	2774303	3L_2774303_SNP [dm3] 3L_2774303_SNP [dm6]	C	A	6.633e^-4	0.93	UPSTREAM Atg2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.623e^-2)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.5719	0.0588

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1200 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3L	8353466	3L_8353466_SNP [dm3] 3L_8360366_SNP [dm6]	G	A	4.614e^-6	0.955	UTR_5_PRIME Idh INTRON Idh	TF binding site mE1_TFBS_Trl
X	12492679	X_12492679_SNP [dm3] X_12598646_SNP [dm6]	C	G	7.833e^-6	0.955	NON_SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	6641610	3R_6641610_SNP [dm3] 3R_10815888_SNP [dm6]	T	C	1.198e^-5	0.955	SYNONYMOUS_CODING CG4089 UPSTREAM CG14693	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	10822088	2L_10822088_SNP [dm3] 2L_10822088_SNP [dm6]	C	G	1.259e^-5	0.955	DOWNSTREAM CG17134 INTRON Nos
X	6423638	X_6423638_SNP [dm3] X_6529605_SNP [dm6]	T	C	1.385e^-5	0.955	SYNONYMOUS_CODING Spat
X	6423644	X_6423644_SNP [dm3] X_6529611_SNP [dm6]	A	C	1.385e^-5	0.955	SYNONYMOUS_CODING Spat
3L	12591666	3L_12591666_SNP [dm3] 3L_12598566_SNP [dm6]	A	T	1.390e^-5	0.955	INTERGENIC
3L	1241922	3L_1241922_SNP [dm3] 3L_1241922_SNP [dm6]	A	C	1.447e^-5	0.955	UTR_3_PRIME CG9194 & 1 other
X	17116088	X_17116088_SNP [dm3] X_17222055_SNP [dm6]	A	T	1.540e^-5	0.955	DOWNSTREAM CG34327 INTRON CG5172
2R	17076102	2R_17076102_SNP [dm3] 2R_21188597_SNP [dm6]	G	T	1.671e^-5	0.955	INTRON tud
X	17026168	X_17026168_SNP [dm3] X_17132135_SNP [dm6]	C	G	1.734e^-5	0.955	INTRON CG5004
X	17026170	X_17026170_SNP [dm3] X_17132137_SNP [dm6]	G	A	1.734e^-5	0.955	INTRON CG5004
X	17116110	X_17116110_SNP [dm3] X_17222077_SNP [dm6]	G	A	2.029e^-5	0.955	DOWNSTREAM CG34327 INTRON CG5172
2L	19700905	2L_19700905_SNP [dm3] 2L_19700905_SNP [dm6]	A	T	2.070e^-5	0.955	NON_SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12591664	3L_12591664_SNP [dm3] 3L_12598564_SNP [dm6]	G	A	2.124e^-5	0.955	INTERGENIC
3L	12591671	3L_12591671_INS [dm3] 3L_12598571_INS [dm6]	A	AT	2.124e^-5	0.955	INTERGENIC
X	21027887	X_21027887_SNP [dm3] X_21156860_SNP [dm6]	A	G	2.172e^-5	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
3L	12591668	3L_12591668_SNP [dm3] 3L_12598568_SNP [dm6]	T	C	2.248e^-5	0.955	INTERGENIC
2L	11357246	2L_11357246_SNP [dm3] 2L_11357246_SNP [dm6]	A	G	2.482e^-5	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2R	15466047	2R_15466047_SNP [dm3] 2R_19578542_SNP [dm6]	C	G	2.497e^-5	0.955	INTRON sm
2L	16736847	2L_16736847_SNP [dm3] 2L_16736847_SNP [dm6]	C	T	2.575e^-5	0.955	NON_SYNONYMOUS_CODING glu
2L	4708111	2L_4708111_SNP [dm3] 2L_4708111_SNP [dm6]	T	A	2.642e^-5	0.955	INTRON CG34351
2L	4708137	2L_4708137_SNP [dm3] 2L_4708137_SNP [dm6]	A	T	2.642e^-5	0.955	INTRON CG34351
X	17026183	X_17026183_DEL [dm3] X_17132150_DEL [dm6]	AC	A	2.804e^-5	0.955	INTRON CG5004
2L	12737682	2L_12737682_SNP [dm3] 2L_12737682_SNP [dm6]	T	C	2.935e^-5	0.955	INTRON MRP	TF binding site mE1_TFBS_cad
2L	12737835	2L_12737835_SNP [dm3] 2L_12737835_SNP [dm6]	G	A	2.935e^-5	0.955	INTRON MRP	TF binding site mE1_TFBS_cad
X	12378547	X_12378547_SNP [dm3] X_12484514_SNP [dm6]	C	T	3.090e^-5	0.955	INTERGENIC
X	12378587	X_12378587_SNP [dm3] X_12484554_SNP [dm6]	C	A	3.090e^-5	0.955	INTERGENIC
2R	14663051	2R_14663051_SNP [dm3] 2R_18775546_SNP [dm6]	T	A	3.111e^-5	0.955	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
3L	19010469	3L_19010469_SNP [dm3] 3L_19017369_SNP [dm6]	T	A	3.112e^-5	0.955	INTRON nkd	TF binding site mE1_TFBS_HSA
2R	15916550	2R_15916550_SNP [dm3] 2R_20029045_SNP [dm6]	A	T	3.227e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15916572	2R_15916572_SNP [dm3] 2R_20029067_SNP [dm6]	T	C	3.227e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3L	10001490	3L_10001490_SNP [dm3] 3L_10008390_SNP [dm6]	G	A	3.436e^-5	0.955	INTRON dpr6
2R	4956380	2R_4956380_SNP [dm3] 2R_9068875_SNP [dm6]	T	C	3.445e^-5	0.955	UPSTREAM ana INTRON ana
3L	12591726	3L_12591726_SNP [dm3] 3L_12598626_SNP [dm6]	A	T	3.547e^-5	0.955	INTERGENIC
3R	17727459	3R_17727459_SNP [dm3] 3R_21901737_SNP [dm6]	A	T	3.621e^-5	0.955	INTRON CG6678
3L	7835093	3L_7835093_SNP [dm3] 3L_7841993_SNP [dm6]	G	T	3.674e^-5	0.955	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2R	16733760	2R_16733760_SNP [dm3] 2R_20846255_SNP [dm6]	A	G	3.830e^-5	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15111660	X_15111660_SNP [dm3] X_15217627_SNP [dm6]	C	G	3.867e^-5	0.955	INTERGENIC
2L	19700914	2L_19700914_SNP [dm3] 2L_19700914_SNP [dm6]	A	G	3.990e^-5	0.955	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18587934	2R_18587934_DEL [dm3] 2R_22700429_DEL [dm6]	TT	T	4.014e^-5	0.955	UTR_5_PRIME robo DOWNSTREAM CG30259 INTRON robo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3R	10178980	3R_10178980_SNP [dm3] 3R_14353258_SNP [dm6]	C	T	4.182e^-5	0.955	INTRON NK7.1
2R	14662956	2R_14662956_SNP [dm3] 2R_18775451_SNP [dm6]	A	G	4.441e^-5	0.955	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	14662987	2R_14662987_SNP [dm3] 2R_18775482_SNP [dm6]	G	C	4.441e^-5	0.955	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2L	19700881	2L_19700881_SNP [dm3] 2L_19700881_SNP [dm6]	T	A	4.664e^-5	0.955	SYNONYMOUS_CODING scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4708141	2L_4708141_SNP [dm3] 2L_4708141_SNP [dm6]	T	C	4.671e^-5	0.955	INTRON CG34351
3R	13643749	3R_13643749_SNP [dm3] 3R_17818027_SNP [dm6]	A	G	4.741e^-5	0.955	INTRON tinc
2R	20021016	2R_20021016_SNP [dm3] 2R_24133493_SNP [dm6]	T	A	4.867e^-5	0.955	UTR_5_PRIME tamo UPSTREAM Zfrp8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	20024454	2R_20024454_SNP [dm3] 2R_24136931_SNP [dm6]	A	G	4.867e^-5	0.955	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6325862	3L_6325862_SNP [dm3] 3L_6332762_SNP [dm6]	A	G	4.933e^-5	0.955	SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_chinmo
3L	13605758	3L_13605758_SNP [dm3] 3L_13612658_SNP [dm6]	C	T	5.005e^-5	0.955	INTRON bru-3
3R	26449308	3R_26449308_SNP [dm3] 3R_30623586_SNP [dm6]	A	G	5.024e^-5	0.955	INTERGENIC
2L	6236373	2L_6236373_SNP [dm3] 2L_6236373_SNP [dm6]	C	A	5.035e^-5	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2180929	3L_2180929_INS [dm3] 3L_2180929_INS [dm6]	T	TATGCTGAAAGCTCT...	5.141e^-5	0.955	INTERGENIC
3R	3850754	3R_3850754_SNP [dm3] 3R_8025032_SNP [dm6]	T	C	5.222e^-5	0.955	NON_SYNONYMOUS_CODING CG2747 UTR_5_PRIME CG2747	TF binding site mE1_TFBS_chinmo
3L	12433057	3L_12433057_SNP [dm3] 3L_12439957_SNP [dm6]	G	T	5.352e^-5	0.955	INTERGENIC
3R	26675518	3R_26675518_SNP [dm3] 3R_30849796_SNP [dm6]	G	A	5.609e^-5	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	26675527	3R_26675527_SNP [dm3] 3R_30849805_SNP [dm6]	C	G	5.609e^-5	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr
3R	23944859	3R_23944859_SNP [dm3] 3R_28119137_SNP [dm6]	C	G	5.641e^-5	0.955	INTERGENIC
3R	22294640	3R_22294640_SNP [dm3] 3R_26468918_SNP [dm6]	T	G	5.951e^-5	0.955	SYNONYMOUS_CODING CG5455
2R	10868545	2R_10868545_SNP [dm3] 2R_14981040_SNP [dm6]	G	C	6.093e^-5	0.955	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2R	1005905	2R_1005905_SNP [dm3] 2R_5118400_SNP [dm6]	C	A	6.226e^-5	0.955	INTRON gus
2L	16667395	2L_16667395_SNP [dm3] 2L_16667395_SNP [dm6]	T	A	6.313e^-5	0.955	INTRON Trpgamma
2R	4956460	2R_4956460_SNP [dm3] 2R_9068955_SNP [dm6]	A	T	6.341e^-5	0.955	UPSTREAM ana INTRON ana
3R	3505007	3R_3505007_SNP [dm3] 3R_7679285_SNP [dm6]	C	G	6.523e^-5	0.955	INTRON Nlg1
2R	9583037	2R_9583037_SNP [dm3] 2R_13695532_SNP [dm6]	A	T	6.536e^-5	0.955	INTRON fas
X	2448032	X_2448032_SNP [dm3] X_2553999_SNP [dm6]	G	A	6.544e^-5	0.955	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11420524	3L_11420524_SNP [dm3] 3L_11427424_SNP [dm6]	T	C	6.716e^-5	0.955	INTERGENIC
2L	16674798	2L_16674798_SNP [dm3] 2L_16674798_SNP [dm6]	C	T	6.737e^-5	0.955	INTRON Trpgamma
2R	21011437	2R_21011437_SNP [dm3] 2R_25123914_SNP [dm6]	A	G	6.800e^-5	0.955	INTRON lov
3R	4927473	3R_4927473_SNP [dm3] 3R_9101751_SNP [dm6]	C	T	6.852e^-5	0.955	INTRON pum
3L	1514111	3L_1514111_SNP [dm3] 3L_1514111_SNP [dm6]	A	G	6.913e^-5	0.955	INTRON Psa & 1 other	TF binding site BDTNP1_TFBS_da
2L	19245354	2L_19245354_SNP [dm3] 2L_19245354_SNP [dm6]	T	C	7.149e^-5	0.955	INTERGENIC
2L	2854895	2L_2854895_SNP [dm3] 2L_2854895_SNP [dm6]	T	A	7.169e^-5	0.955	UTR_5_PRIME CG3104 INTRON CG3104
X	2239876	X_2239876_SNP [dm3] X_2345843_SNP [dm6]	A	T	7.189e^-5	0.955	SYNONYMOUS_CODING ptr
2R	20757841	2R_20757841_SNP [dm3] 2R_24870318_SNP [dm6]	A	G	7.232e^-5	0.955	NON_SYNONYMOUS_CODING Atf-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	14976089	2L_14976089_SNP [dm3] 2L_14976089_SNP [dm6]	A	T	7.275e^-5	0.955	UTR_3_PRIME mol
2R	12408019	2R_12408019_SNP [dm3] 2R_16520514_SNP [dm6]	G	A	7.401e^-5	0.955	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	2344474	2L_2344474_SNP [dm3] 2L_2344474_SNP [dm6]	C	T	7.487e^-5	0.955	INTRON CG9967 & 1 other
X	12378441	X_12378441_INS [dm3] X_12484408_INS [dm6]	A	AA	7.524e^-5	0.955	INTERGENIC
3L	13188469	3L_13188469_SNP [dm3] 3L_13195369_SNP [dm6]	A	G	7.535e^-5	0.955	INTERGENIC
2R	20024266	2R_20024266_SNP [dm3] 2R_24136743_SNP [dm6]	T	G	7.619e^-5	0.955	INTRON CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10865111	X_10865111_SNP [dm3] X_10971078_SNP [dm6]	T	G	7.817e^-5	0.955	INTRON CG42339
3R	13922786	3R_13922786_SNP [dm3] 3R_18097064_SNP [dm6]	A	C	7.954e^-5	0.955	INTRON sr
2L	16674858	2L_16674858_SNP [dm3] 2L_16674858_SNP [dm6]	T	A	8.034e^-5	0.955	INTRON Trpgamma
2R	20778726	2R_20778726_SNP [dm3] 2R_24891203_SNP [dm6]	G	A	8.203e^-5	0.955	UPSTREAM NaCP60E & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	2344440	2L_2344440_SNP [dm3] 2L_2344440_SNP [dm6]	G	A	8.218e^-5	0.955	INTRON CG9967 & 1 other
3R	27656581	3R_27656581_SNP [dm3] 3R_31830859_SNP [dm6]	T	A	8.383e^-5	0.955	INTRON RhoGAP100F
2L	6337467	2L_6337467_SNP [dm3] 2L_6337467_SNP [dm6]	C	T	8.630e^-5	0.955	INTRON Pez	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1006196	2R_1006196_SNP [dm3] 2R_5118691_SNP [dm6]	A	C	8.669e^-5	0.955	INTRON gus	transposable element FlyBase
3L	12591685	3L_12591685_SNP [dm3] 3L_12598585_SNP [dm6]	A	T	8.722e^-5	0.955	INTERGENIC
X	2698786	X_2698786_SNP [dm3] X_2804753_SNP [dm6]	C	T	9.109e^-5	0.955	INTRON kirre
X	21027827	X_21027827_SNP [dm3] X_21156800_SNP [dm6]	T	C	9.141e^-5	0.955	UPSTREAM CR45499 & 1 other INTERGENIC
X	2243877	X_2243877_SNP [dm3] X_2349844_SNP [dm6]	A	G	9.376e^-5	0.955	UTR_5_PRIME ptr INTRON ptr	TF binding site BDTNP1_TFBS_dl
X	21027871	X_21027871_DEL [dm3] X_21156844_DEL [dm6]	TTAACTCGCAC...	T	9.460e^-5	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027883	X_21027883_DEL [dm3] X_21156856_DEL [dm6]	CT	C	9.460e^-5	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
3R	14437267	3R_14437267_SNP [dm3] 3R_18611545_SNP [dm6]	T	A	9.491e^-5	0.955	INTRON qin & 1 other
2R	16912737	2R_16912737_INS [dm3] 2R_21025232_INS [dm6]	G	GCTAAG	9.529e^-5	0.955	DOWNSTREAM RIC-3 INTRON CG9350	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	19540687	3R_19540687_DEL [dm3] 3R_23714965_DEL [dm6]	CTCTATCTTAAGACTTC...	C	9.569e^-5	0.955	INTRON nau
2L	12120414	2L_12120414_SNP [dm3] 2L_12120414_SNP [dm6]	G	A	9.635e^-5	0.955	INTRON CG17211
X	10045215	X_10045215_INS [dm3] X_10151182_INS [dm6]	G	GAGTG	9.888e^-5	0.955	INTRON CR44894
2L	12804850	2L_12804850_SNP [dm3] 2L_12804850_SNP [dm6]	A	T	9.905e^-5	0.955	INTERGENIC
X	12378826	X_12378826_SNP [dm3] X_12484793_SNP [dm6]	G	C	1.004e^-4	0.955	INTERGENIC
2R	1005904	2R_1005904_SNP [dm3] 2R_5118399_SNP [dm6]	A	T	1.005e^-4	0.955	INTRON gus
2R	17757708	2R_17757708_SNP [dm3] 2R_21870203_SNP [dm6]	A	G	1.015e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	14662974	2R_14662974_SNP [dm3] 2R_18775469_SNP [dm6]	A	C	1.036e^-4	0.955	DOWNSTREAM Mctp & 1 other INTRON CR43964	TF binding site mE1_TFBS_bab1
2R	8135837	2R_8135837_SNP [dm3] 2R_12248332_SNP [dm6]	A	G	1.038e^-4	0.955	INTERGENIC
2L	16566382	2L_16566382_SNP [dm3] 2L_16566382_SNP [dm6]	A	T	1.059e^-4	0.955	INTRON CG42389
2L	2849551	2L_2849551_SNP [dm3] 2L_2849551_SNP [dm6]	A	G	1.070e^-4	0.955	UTR_3_PRIME CG3104 DOWNSTREAM CG2983	TF binding site mE1_TFBS_cad
2R	4941109	2R_4941109_INS [dm3] 2R_9053604_INS [dm6]	A	AATCCA	1.100e^-4	0.955	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15199331	3L_15199331_SNP [dm3] 3L_15206231_SNP [dm6]	C	A	1.121e^-4	0.955	INTERGENIC
3L	15199388	3L_15199388_SNP [dm3] 3L_15206288_SNP [dm6]	T	G	1.121e^-4	0.955	INTERGENIC
3L	15199399	3L_15199399_SNP [dm3] 3L_15206299_SNP [dm6]	C	T	1.121e^-4	0.955	INTERGENIC
3L	15199411	3L_15199411_SNP [dm3] 3L_15206311_SNP [dm6]	T	A	1.121e^-4	0.955	INTERGENIC
X	12516277	X_12516277_SNP [dm3] X_12622244_SNP [dm6]	T	C	1.133e^-4	0.955	EXON CR44568	TF binding site BDTNP1_TFBS_dl
X	12516279	X_12516279_SNP [dm3] X_12622246_SNP [dm6]	A	T	1.133e^-4	0.955	EXON CR44568	TF binding site BDTNP1_TFBS_dl
X	2698884	X_2698884_SNP [dm3] X_2804851_SNP [dm6]	A	C	1.133e^-4	0.955	INTRON kirre	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	17026070	X_17026070_SNP [dm3] X_17132037_SNP [dm6]	A	T	1.137e^-4	0.955	INTRON CG5004
3L	13345731	3L_13345731_SNP [dm3] 3L_13352631_SNP [dm6]	C	T	1.139e^-4	0.955	SYNONYMOUS_CODING CG17687
X	21028604	X_21028604_DEL [dm3] X_21157577_DEL [dm6]	AAAGC	A	1.139e^-4	0.955	UPSTREAM CR32511 INTERGENIC	transposable element FlyBase
2R	9202380	2R_9202380_SNP [dm3] 2R_13314875_SNP [dm6]	A	T	1.143e^-4	0.955	INTERGENIC
2R	9202442	2R_9202442_SNP [dm3] 2R_13314937_SNP [dm6]	T	C	1.143e^-4	0.955	INTERGENIC
2R	10868591	2R_10868591_SNP [dm3] 2R_14981086_SNP [dm6]	C	A	1.153e^-4	0.955	UPSTREAM pcs DOWNSTREAM ckn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Ubx
2L	3681226	2L_3681226_SNP [dm3] 2L_3681226_SNP [dm6]	A	T	1.159e^-4	0.955	INTRON CG34340
2L	13672957	2L_13672957_SNP [dm3] 2L_13672957_SNP [dm6]	T	A	1.159e^-4	0.955	UTR_3_PRIME CG18507
3R	21785329	3R_21785329_SNP [dm3] 3R_25959607_SNP [dm6]	G	A	1.165e^-4	0.955	SYNONYMOUS_CODING CG14540
2L	18628802	2L_18628802_SNP [dm3] 2L_18628802_SNP [dm6]	G	T	1.169e^-4	0.955	INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	13821756	2R_13821756_SNP [dm3] 2R_17934251_SNP [dm6]	A	G	1.173e^-4	0.955	INTERGENIC
2R	1005428	2R_1005428_SNP [dm3] 2R_5117923_SNP [dm6]	C	A	1.178e^-4	0.955	INTRON gus
X	16848887	X_16848887_SNP [dm3] X_16954854_SNP [dm6]	C	T	1.181e^-4	0.955	SYNONYMOUS_CODING RhoGAP15B
X	16848893	X_16848893_SNP [dm3] X_16954860_SNP [dm6]	T	G	1.181e^-4	0.955	SYNONYMOUS_CODING RhoGAP15B
X	12492251	X_12492251_SNP [dm3] X_12598218_SNP [dm6]	G	C	1.198e^-4	0.955	NON_SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	11331124	2L_11331124_SNP [dm3] 2L_11331124_SNP [dm6]	G	A	1.209e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
3L	7921595	3L_7921595_SNP [dm3] 3L_7928495_SNP [dm6]	C	T	1.210e^-4	0.955	SYNONYMOUS_CODING syd	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4737028	3L_4737028_SNP [dm3] 3L_4737028_SNP [dm6]	A	G	1.226e^-4	0.955	INTRON RhoGEF64C
2R	20021528	2R_20021528_DEL [dm3] 2R_24134005_DEL [dm6]	GA	G	1.231e^-4	0.955	UTR_5_PRIME Zfrp8 UPSTREAM tamo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
X	14757350	X_14757350_SNP [dm3] X_14863317_SNP [dm6]	T	A	1.274e^-4	0.955	UTR_3_PRIME CG9518 INTRON Flo2
2R	10867842	2R_10867842_SNP [dm3] 2R_14980337_SNP [dm6]	A	G	1.310e^-4	0.955	UTR_3_PRIME ckn UPSTREAM pcs
X	21028610	X_21028610_DEL [dm3] X_21157583_DEL [dm6]	TTAA	T	1.320e^-4	0.955	UPSTREAM CR32511 INTERGENIC	transposable element FlyBase
X	3549193	X_3549193_SNP [dm3] X_3655160_SNP [dm6]	C	T	1.322e^-4	0.955	INTRON AstA-R1
X	14757352	X_14757352_DEL [dm3] X_14863319_DEL [dm6]	CT	C	1.328e^-4	0.955	UTR_3_PRIME CG9518 INTRON Flo2
2R	12408099	2R_12408099_SNP [dm3] 2R_16520594_SNP [dm6]	C	T	1.347e^-4	0.955	INTRON Sema-2a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
2L	12120352	2L_12120352_SNP [dm3] 2L_12120352_SNP [dm6]	C	T	1.355e^-4	0.955	INTRON CG17211
X	17026074	X_17026074_SNP [dm3] X_17132041_SNP [dm6]	A	T	1.371e^-4	0.955	INTRON CG5004
2R	2977855	2R_2977855_SNP [dm3] 2R_7090350_SNP [dm6]	T	A	1.375e^-4	0.955	INTRON esn
2L	6842964	2L_6842964_SNP [dm3] 2L_6842964_SNP [dm6]	G	A	1.382e^-4	0.955	INTERGENIC
X	14030918	X_14030918_SNP [dm3] X_14136885_SNP [dm6]	T	C	1.385e^-4	0.955	INTERGENIC
X	14030919	X_14030919_SNP [dm3] X_14136886_SNP [dm6]	T	C	1.385e^-4	0.955	INTERGENIC
3L	12434229	3L_12434229_SNP [dm3] 3L_12441129_SNP [dm6]	T	C	1.399e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	10179026	3R_10179026_SNP [dm3] 3R_14353304_SNP [dm6]	G	A	1.413e^-4	0.955	INTRON NK7.1
3R	10179029	3R_10179029_SNP [dm3] 3R_14353307_SNP [dm6]	A	C	1.413e^-4	0.955	INTRON NK7.1
2R	1361370	2R_1361370_SNP [dm3] 2R_5473865_SNP [dm6]	T	C	1.414e^-4	0.955	INTRON CG30440	transposable element FlyBase
3L	10003298	3L_10003298_SNP [dm3] 3L_10010198_SNP [dm6]	C	T	1.419e^-4	0.955	INTRON dpr6
3R	22937112	3R_22937112_SNP [dm3] 3R_27111390_SNP [dm6]	A	C	1.419e^-4	0.955	SYNONYMOUS_CODING gb DOWNSTREAM CR45209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22937118	3R_22937118_SNP [dm3] 3R_27111396_SNP [dm6]	A	C	1.419e^-4	0.955	SYNONYMOUS_CODING gb DOWNSTREAM CR45209	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23538409	3R_23538409_SNP [dm3] 3R_27712687_SNP [dm6]	G	A	1.419e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	25484556	3R_25484556_SNP [dm3] 3R_29658834_SNP [dm6]	G	A	1.419e^-4	0.955	INTRON Dop1R2
3R	25485391	3R_25485391_SNP [dm3] 3R_29659669_SNP [dm6]	G	A	1.419e^-4	0.955	INTRON Dop1R2
3R	25485406	3R_25485406_SNP [dm3] 3R_29659684_SNP [dm6]	C	T	1.419e^-4	0.955	INTRON Dop1R2
3R	20477360	3R_20477360_SNP [dm3] 3R_24651638_SNP [dm6]	C	A	1.420e^-4	0.955	INTRON ash2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	20024436	2R_20024436_SNP [dm3] 2R_24136913_SNP [dm6]	G	A	1.435e^-4	0.955	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	4941113	2R_4941113_SNP [dm3] 2R_9053608_SNP [dm6]	T	A	1.439e^-4	0.955	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7254681	2L_7254681_SNP [dm3] 2L_7254681_SNP [dm6]	G	A	1.440e^-4	0.955	DOWNSTREAM Wnt4 INTERGENIC
2L	7254748	2L_7254748_DEL [dm3] 2L_7254748_DEL [dm6]	AA	A	1.440e^-4	0.955	DOWNSTREAM Wnt4 INTERGENIC
X	13171279	X_13171279_SNP [dm3] X_13277246_SNP [dm6]	G	A	1.458e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2L	3058059	2L_3058059_SNP [dm3] 2L_3058059_SNP [dm6]	C	G	1.512e^-4	0.955	INTRON CG3523
2R	7571777	2R_7571777_SNP [dm3] 2R_11684272_SNP [dm6]	T	C	1.536e^-4	0.955	UTR_3_PRIME CG13196 INTRON Buffy
3L	5939946	3L_5939946_INS [dm3] 3L_5946846_INS [dm6]	T	TGAT	1.539e^-4	0.955	INTRON CG33993	TF binding site mE1_TFBS_cad
2L	13904271	2L_13904271_SNP [dm3] 2L_13904271_SNP [dm6]	T	C	1.550e^-4	0.955	UTR_5_PRIME Smg5 UPSTREAM Smg5 INTRON Smg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
2R	20022879	2R_20022879_SNP [dm3] 2R_24135356_SNP [dm6]	G	A	1.550e^-4	0.955	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
2R	6128714	2R_6128714_SNP [dm3] 2R_10241209_SNP [dm6]	T	G	1.563e^-4	0.955	INTRON Hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13349187	3L_13349187_SNP [dm3] 3L_13356087_SNP [dm6]	G	A	1.573e^-4	0.955	UPSTREAM Nplp2 INTERGENIC
2L	6454305	2L_6454305_SNP [dm3] 2L_6454305_SNP [dm6]	G	A	1.588e^-4	0.955	INTRON retm
3R	7957299	3R_7957299_SNP [dm3] 3R_12131577_SNP [dm6]	G	C	1.596e^-4	0.955	DOWNSTREAM tRNA:K5:87BC INTERGENIC
3L	3139000	3L_3139000_SNP [dm3] 3L_3139000_SNP [dm6]	T	G	1.631e^-4	0.955	INTRON CG11537
2R	14742814	2R_14742814_SNP [dm3] 2R_18855309_SNP [dm6]	A	T	1.648e^-4	0.955	UPSTREAM Jheh1 DOWNSTREAM Jheh2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3L	15199332	3L_15199332_SNP [dm3] 3L_15206232_SNP [dm6]	G	T	1.660e^-4	0.955	INTERGENIC
X	11195591	X_11195591_SNP [dm3] X_11301558_SNP [dm6]	G	A	1.671e^-4	0.955	INTRON CG44422
3L	12591631	3L_12591631_SNP [dm3] 3L_12598531_SNP [dm6]	T	G	1.693e^-4	0.955	INTERGENIC
3L	12591635	3L_12591635_SNP [dm3] 3L_12598535_SNP [dm6]	T	G	1.693e^-4	0.955	INTERGENIC
3L	606115	3L_606115_SNP [dm3] 3L_606115_SNP [dm6]	C	T	1.694e^-4	0.955	INTRON Reg-2	TF binding site BDTNP1_TFBS_dl
X	12516205	X_12516205_SNP [dm3] X_12622172_SNP [dm6]	C	T	1.710e^-4	0.955	UPSTREAM CR44568 DOWNSTREAM CG11085 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4662628	3L_4662628_SNP [dm3] 3L_4662628_SNP [dm6]	A	G	1.723e^-4	0.955	INTRON axo
3L	14914872	3L_14914872_SNP [dm3] 3L_14921772_SNP [dm6]	G	C	1.723e^-4	0.955	START_GAINED DCX-EMAP UTR_5_PRIME DCX-EMAP INTRON DCX-EMAP
X	12717328	X_12717328_SNP [dm3] X_12823295_SNP [dm6]	T	C	1.753e^-4	0.955	INTRON Pde9
3L	4662626	3L_4662626_SNP [dm3] 3L_4662626_SNP [dm6]	G	A	1.769e^-4	0.955	INTRON axo
3R	21719519	3R_21719519_SNP [dm3] 3R_25893797_SNP [dm6]	T	C	1.770e^-4	0.955	SYNONYMOUS_CODING CG5913 DOWNSTREAM Lnk	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	10578970	3R_10578970_SNP [dm3] 3R_14753248_SNP [dm6]	C	T	1.772e^-4	0.955	NON_SYNONYMOUS_CODING CG7362 INTRON jvl	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9806572	2R_9806572_SNP [dm3] 2R_13919067_SNP [dm6]	T	C	1.780e^-4	0.955	INTRON shot	TF binding site mE1_TFBS_Trl
2L	15958149	2L_15958149_SNP [dm3] 2L_15958149_SNP [dm6]	A	T	1.792e^-4	0.955	INTRON beat-Ib & 1 other
2R	14411926	2R_14411926_SNP [dm3] 2R_18524421_SNP [dm6]	T	C	1.801e^-4	0.955	SYNONYMOUS_CODING CG43066 UTR_3_PRIME CG43066
3L	15199444	3L_15199444_SNP [dm3] 3L_15206344_SNP [dm6]	A	G	1.810e^-4	0.955	INTERGENIC
3L	15199445	3L_15199445_SNP [dm3] 3L_15206345_SNP [dm6]	A	G	1.810e^-4	0.955	INTERGENIC
3L	15199448	3L_15199448_SNP [dm3] 3L_15206348_SNP [dm6]	A	G	1.810e^-4	0.955	INTERGENIC
2L	5949730	2L_5949730_SNP [dm3] 2L_5949730_SNP [dm6]	G	T	1.832e^-4	0.955	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2L	5949732	2L_5949732_SNP [dm3] 2L_5949732_SNP [dm6]	G	C	1.832e^-4	0.955	DOWNSTREAM Gpdh INTRON CG9044	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3R	25155915	3R_25155915_SNP [dm3] 3R_29330193_SNP [dm6]	G	A	1.832e^-4	0.955	INTERGENIC
3R	23944872	3R_23944872_SNP [dm3] 3R_28119150_SNP [dm6]	T	A	1.837e^-4	0.955	INTERGENIC
2R	10867961	2R_10867961_SNP [dm3] 2R_14980456_SNP [dm6]	A	G	1.853e^-4	0.955	UTR_3_PRIME ckn UPSTREAM pcs	TF binding site BDTNP1_TFBS_dl
3L	4033591	3L_4033591_DEL [dm3] 3L_4033591_DEL [dm6]	TAG	T	1.853e^-4	0.955	UTR_5_PRIME Gr64e UTR_3_PRIME Gr64d UPSTREAM Gr64e DOWNSTREAM CR45042 & 1 other
3L	17815730	3L_17815730_SNP [dm3] 3L_17822630_SNP [dm6]	C	T	1.861e^-4	0.955	NON_SYNONYMOUS_CODING Ir75c UPSTREAM Grd	TF binding site mE1_TFBS_HSA
2L	11923818	2L_11923818_SNP [dm3] 2L_11923818_SNP [dm6]	G	T	1.862e^-4	0.955	INTRON Pde1c
2R	17076073	2R_17076073_SNP [dm3] 2R_21188568_SNP [dm6]	C	A	1.873e^-4	0.955	NON_SYNONYMOUS_CODING tud
2R	17076094	2R_17076094_SNP [dm3] 2R_21188589_SNP [dm6]	G	T	1.873e^-4	0.955	INTRON tud
X	17026100	X_17026100_SNP [dm3] X_17132067_SNP [dm6]	C	G	1.882e^-4	0.955	INTRON CG5004
2L	11331173	2L_11331173_SNP [dm3] 2L_11331173_SNP [dm6]	A	G	1.888e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
3L	15939945	3L_15939945_SNP [dm3] 3L_15946845_SNP [dm6]	G	A	1.896e^-4	0.955	INTRON Pka-C3	TF binding site mE1_TFBS_cad
2L	16784351	2L_16784351_SNP [dm3] 2L_16784351_SNP [dm6]	C	T	1.903e^-4	0.955	INTRON Mhc	TF binding site mE1_TFBS_cad
3L	579336	3L_579336_SNP [dm3] 3L_579336_SNP [dm6]	G	A	1.918e^-4	0.955	UTR_3_PRIME hipk
3L	579425	3L_579425_SNP [dm3] 3L_579425_SNP [dm6]	C	A	1.918e^-4	0.955	UTR_3_PRIME hipk
3L	5734725	3L_5734725_SNP [dm3] 3L_5741625_SNP [dm6]	A	G	1.933e^-4	0.955	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
3L	6354006	3L_6354006_SNP [dm3] 3L_6360906_SNP [dm6]	G	C	1.962e^-4	0.955	INTERGENIC
2L	13673004	2L_13673004_SNP [dm3] 2L_13673004_SNP [dm6]	T	A	1.991e^-4	0.955	DOWNSTREAM CG18507 INTERGENIC
2L	13673034	2L_13673034_SNP [dm3] 2L_13673034_SNP [dm6]	G	A	1.991e^-4	0.955	DOWNSTREAM CG18507 INTERGENIC
3L	10532280	3L_10532280_SNP [dm3] 3L_10539180_SNP [dm6]	A	G	1.998e^-4	0.955	INTRON A2bp1
3L	10532114	3L_10532114_SNP [dm3] 3L_10539014_SNP [dm6]	A	C	2.004e^-4	0.955	INTRON A2bp1
2L	15149715	2L_15149715_SNP [dm3] 2L_15149715_SNP [dm6]	G	T	2.006e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	11357241	2L_11357241_SNP [dm3] 2L_11357241_SNP [dm6]	G	C	2.006e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	8353335	3L_8353335_SNP [dm3] 3L_8360235_SNP [dm6]	T	C	2.009e^-4	0.955	INTRON Idh	TF binding site mE1_TFBS_Trl
2R	10867826	2R_10867826_INS [dm3] 2R_14980321_INS [dm6]	T	TT	2.026e^-4	0.955	UTR_3_PRIME ckn UPSTREAM pcs
3L	19079372	3L_19079372_SNP [dm3] 3L_19086272_SNP [dm6]	C	A	2.055e^-4	0.955	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	5922260	2L_5922260_SNP [dm3] 2L_5922260_SNP [dm6]	A	G	2.059e^-4	0.955	UTR_3_PRIME bchs DOWNSTREAM CG9016
2R	17076247	2R_17076247_SNP [dm3] 2R_21188742_SNP [dm6]	G	A	2.086e^-4	0.955	SYNONYMOUS_CODING tud	TF binding site mE1_TFBS_sens
2R	11314491	2R_11314491_SNP [dm3] 2R_15426986_SNP [dm6]	A	G	2.099e^-4	0.955	DOWNSTREAM CG34188 INTRON CG43729
2R	10971160	2R_10971160_SNP [dm3] 2R_15083655_SNP [dm6]	A	G	2.111e^-4	0.955	INTERGENIC
2L	19701038	2L_19701038_SNP [dm3] 2L_19701038_SNP [dm6]	A	G	2.120e^-4	0.955	UPSTREAM scw INTRON Lar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12804843	2L_12804843_SNP [dm3] 2L_12804843_SNP [dm6]	T	A	2.126e^-4	0.955	INTERGENIC
2L	12120160	2L_12120160_SNP [dm3] 2L_12120160_SNP [dm6]	A	T	2.134e^-4	0.955	INTRON CG17211
3R	6555178	3R_6555178_SNP [dm3] 3R_10729456_SNP [dm6]	T	C	2.138e^-4	0.955	INTERGENIC
2L	2592278	2L_2592278_SNP [dm3] 2L_2592278_SNP [dm6]	C	A	2.138e^-4	0.955	INTRON CG15394
3R	23767183	3R_23767183_SNP [dm3] 3R_27941461_SNP [dm6]	A	C	2.147e^-4	0.955	NON_SYNONYMOUS_CODING CG5514	TF binding site mE1_TFBS_HSA
3L	5080168	3L_5080168_SNP [dm3] 3L_5080168_SNP [dm6]	C	T	2.158e^-4	0.955	INTERGENIC
3L	5080221	3L_5080221_SNP [dm3] 3L_5080221_SNP [dm6]	T	A	2.158e^-4	0.955	INTERGENIC
2L	558622	2L_558622_SNP [dm3] 2L_558622_SNP [dm6]	T	C	2.162e^-4	0.955	SYNONYMOUS_CODING rempA UPSTREAM CG2789 INTRON rempA	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	12718544	2L_12718544_SNP [dm3] 2L_12718544_SNP [dm6]	T	A	2.164e^-4	0.955	UPSTREAM MRP INTRON CG5792	TF binding site mE1_TFBS_Trl
X	3549838	X_3549838_DEL [dm3] X_3655805_DEL [dm6]	ATA	A	2.178e^-4	0.955	INTRON AstA-R1
3R	21901224	3R_21901224_SNP [dm3] 3R_26075502_SNP [dm6]	T	A	2.187e^-4	0.955	INTERGENIC
3L	1580287	3L_1580287_SNP [dm3] 3L_1580287_SNP [dm6]	A	T	2.203e^-4	0.955	INTRON CG13917
2L	2855326	2L_2855326_SNP [dm3] 2L_2855326_SNP [dm6]	C	A	2.204e^-4	0.955	UPSTREAM RpS21 & 1 other INTRON CG3104	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
2L	16778653	2L_16778653_SNP [dm3] 2L_16778653_SNP [dm6]	T	C	2.209e^-4	0.955	INTRON Mhc
2L	16778663	2L_16778663_INS [dm3] 2L_16778663_INS [dm6]	A	AT	2.209e^-4	0.955	INTRON Mhc
3L	5734386	3L_5734386_SNP [dm3] 3L_5741286_SNP [dm6]	A	G	2.225e^-4	0.955	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9742225	3L_9742225_SNP [dm3] 3L_9749125_SNP [dm6]	A	T	2.230e^-4	0.955	INTRON CG42268	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7286061	2R_7286061_SNP [dm3] 2R_11398556_SNP [dm6]	T	C	2.242e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
X	17115336	X_17115336_SNP [dm3] X_17221303_SNP [dm6]	C	T	2.255e^-4	0.955	UPSTREAM CG5172 INTERGENIC
2L	11923971	2L_11923971_SNP [dm3] 2L_11923971_SNP [dm6]	T	C	2.260e^-4	0.955	INTRON Pde1c
3L	8344368	3L_8344368_SNP [dm3] 3L_8351268_SNP [dm6]	G	T	2.260e^-4	0.955	SYNONYMOUS_CODING GAPcenA	TF binding site mE1_TFBS_cad
2R	4642803	2R_4642803_SNP [dm3] 2R_8755298_SNP [dm6]	A	T	2.260e^-4	0.955	INTRON CG8740
3L	2336958	3L_2336958_SNP [dm3] 3L_2336958_SNP [dm6]	C	T	2.274e^-4	0.955	INTRON MsR1
2R	6543989	2R_6543989_SNP [dm3] 2R_10656484_SNP [dm6]	G	C	2.279e^-4	0.955	DOWNSTREAM CR44452 INTERGENIC
X	13549598	X_13549598_SNP [dm3] X_13655565_SNP [dm6]	C	A	2.282e^-4	0.955	SYNONYMOUS_CODING NFAT
X	13549607	X_13549607_SNP [dm3] X_13655574_SNP [dm6]	A	C	2.282e^-4	0.955	SYNONYMOUS_CODING NFAT
X	13171178	X_13171178_DEL [dm3] X_13277145_DEL [dm6]	CTAC	C	2.296e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
X	13171224	X_13171224_SNP [dm3] X_13277191_SNP [dm6]	A	T	2.296e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_Trl
2L	5882281	2L_5882281_SNP [dm3] 2L_5882281_SNP [dm6]	C	T	2.302e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs
2R	17106977	2R_17106977_SNP [dm3] 2R_21219472_SNP [dm6]	C	G	2.309e^-4	0.955	SYNONYMOUS_CODING ASPP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	17757683	2R_17757683_SNP [dm3] 2R_21870178_SNP [dm6]	A	G	2.318e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	15312660	3R_15312660_SNP [dm3] 3R_19486938_SNP [dm6]	A	T	2.347e^-4	0.955	UPSTREAM Dys INTRON Dys	TF binding site mE1_TFBS_Trl
2L	5734413	2L_5734413_SNP [dm3] 2L_5734413_SNP [dm6]	G	A	2.351e^-4	0.955	SYNONYMOUS_CODING CG11147 INTRON CG11030
3R	7957311	3R_7957311_SNP [dm3] 3R_12131589_SNP [dm6]	T	G	2.373e^-4	0.955	DOWNSTREAM tRNA:K5:87BC INTERGENIC
3L	2239449	3L_2239449_SNP [dm3] 3L_2239449_SNP [dm6]	C	T	2.385e^-4	0.955	SYNONYMOUS_CODING ACXD	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	3402277	3R_3402277_SNP [dm3] 3R_7576555_SNP [dm6]	C	T	2.390e^-4	0.955	INTRON CG34127	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	13188518	3L_13188518_SNP [dm3] 3L_13195418_SNP [dm6]	T	G	2.404e^-4	0.955	INTERGENIC
3L	12591580	3L_12591580_SNP [dm3] 3L_12598480_SNP [dm6]	T	C	2.404e^-4	0.955	INTERGENIC
2R	20022989	2R_20022989_SNP [dm3] 2R_24135466_SNP [dm6]	G	T	2.410e^-4	0.955	SYNONYMOUS_CODING CG4065 DOWNSTREAM Zfrp8
2L	9655760	2L_9655760_SNP [dm3] 2L_9655760_SNP [dm6]	A	G	2.412e^-4	0.955	SYNONYMOUS_CODING Apoltp UPSTREAM CG33299
2R	11632020	2R_11632020_SNP [dm3] 2R_15744515_SNP [dm6]	A	G	2.412e^-4	0.955	INTRON CG30089	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3826302	2L_3826302_SNP [dm3] 2L_3826302_SNP [dm6]	C	T	2.416e^-4	0.955	SYNONYMOUS_CODING slp1	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25474559	3R_25474559_SNP [dm3] 3R_29648837_SNP [dm6]	G	C	2.421e^-4	0.955	INTRON Dop1R2
3L	19079465	3L_19079465_DEL [dm3] 3L_19086365_DEL [dm6]	TT	T	2.432e^-4	0.955	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	11331063	2L_11331063_SNP [dm3] 2L_11331063_SNP [dm6]	A	G	2.474e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
3L	2961370	3L_2961370_SNP [dm3] 3L_2961370_SNP [dm6]	G	C	2.484e^-4	0.955	UPSTREAM Or63a & 1 other INTERGENIC
X	15111639	X_15111639_SNP [dm3] X_15217606_SNP [dm6]	A	T	2.488e^-4	0.955	INTERGENIC
3R	23540065	3R_23540065_SNP [dm3] 3R_27714343_SNP [dm6]	G	A	2.522e^-4	0.955	INTERGENIC
3L	12591599	3L_12591599_SNP [dm3] 3L_12598499_SNP [dm6]	A	G	2.522e^-4	0.955	INTERGENIC
3L	12591604	3L_12591604_SNP [dm3] 3L_12598504_SNP [dm6]	G	A	2.522e^-4	0.955	INTERGENIC
2R	4941070	2R_4941070_SNP [dm3] 2R_9053565_SNP [dm6]	A	G	2.542e^-4	0.955	INTRON CG13743	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8324610	3L_8324610_SNP [dm3] 3L_8331510_SNP [dm6]	C	T	2.551e^-4	0.955	INTERGENIC
3R	10166848	3R_10166848_SNP [dm3] 3R_14341126_SNP [dm6]	C	G	2.551e^-4	0.955	INTRON NK7.1
2L	5114909	2L_5114909_SNP [dm3] 2L_5114909_SNP [dm6]	G	A	2.562e^-4	0.955	INTRON Msp300
X	7193545	X_7193545_INS [dm3] X_7299512_INS [dm6]	A	AGTAT	2.573e^-4	0.955	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7193551	X_7193551_SNP [dm3] X_7299518_SNP [dm6]	T	C	2.573e^-4	0.955	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19196899	2R_19196899_SNP [dm3] 2R_23309376_SNP [dm6]	G	T	2.573e^-4	0.955	SYNONYMOUS_CODING Prosbeta5R1	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6670650	2R_6670650_SNP [dm3] 2R_10783145_SNP [dm6]	T	C	2.587e^-4	0.955	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12516204	X_12516204_SNP [dm3] X_12622171_SNP [dm6]	C	A	2.613e^-4	0.955	UPSTREAM CR44568 DOWNSTREAM CG11085 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26932107	3R_26932107_SNP [dm3] 3R_31106385_SNP [dm6]	T	G	2.631e^-4	0.955	UTR_3_PRIME CG11318
2L	16578790	2L_16578790_DEL [dm3] 2L_16578790_DEL [dm6]	TATTCAT	T	2.643e^-4	0.955	INTRON CG42389
3L	2951920	3L_2951920_INS [dm3] 3L_2951920_INS [dm6]	T	TAT	2.650e^-4	0.955	UPSTREAM CG32846 INTRON Shab
2L	3325516	2L_3325516_SNP [dm3] 2L_3325516_SNP [dm6]	T	G	2.650e^-4	0.955	INTRON CG33281
3L	10532113	3L_10532113_SNP [dm3] 3L_10539013_SNP [dm6]	A	C	2.663e^-4	0.955	INTRON A2bp1
X	8617821	X_8617821_SNP [dm3] X_8723788_SNP [dm6]	A	G	2.683e^-4	0.955	UPSTREAM CR43297 INTERGENIC
3R	26242307	3R_26242307_SNP [dm3] 3R_30416585_SNP [dm6]	C	T	2.689e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	13188529	3L_13188529_DEL [dm3] 3L_13195429_DEL [dm6]	GG	T	2.690e^-4	0.955	INTERGENIC
2L	7261843	2L_7261843_INS [dm3] 2L_7261843_INS [dm6]	A	AA	2.694e^-4	0.955	INTRON Wnt4
2L	7261847	2L_7261847_INS [dm3] 2L_7261847_INS [dm6]	G	GA	2.694e^-4	0.955	INTRON Wnt4
2L	7481910	2L_7481910_SNP [dm3] 2L_7481910_SNP [dm6]	A	G	2.715e^-4	0.955	SYNONYMOUS_CODING Ziz
3L	13188511	3L_13188511_SNP [dm3] 3L_13195411_SNP [dm6]	A	C	2.741e^-4	0.955	INTERGENIC
3L	12753034	3L_12753034_SNP [dm3] 3L_12759934_SNP [dm6]	T	G	2.747e^-4	0.955	INTRON CG32113
2R	1018927	2R_1018927_SNP [dm3] 2R_5131422_SNP [dm6]	T	C	2.753e^-4	0.955	INTERGENIC	transposable element FlyBase
3R	10179038	3R_10179038_SNP [dm3] 3R_14353316_SNP [dm6]	A	T	2.756e^-4	0.955	INTRON NK7.1
3L	12876824	3L_12876824_SNP [dm3] 3L_12883724_SNP [dm6]	A	T	2.760e^-4	0.955	INTERGENIC
3L	7835181	3L_7835181_SNP [dm3] 3L_7842081_SNP [dm6]	G	T	2.772e^-4	0.955	INTRON Pdp1	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	2815102	3L_2815102_SNP [dm3] 3L_2815102_SNP [dm6]	T	G	2.780e^-4	0.955	INTRON CG43444
X	12492612	X_12492612_SNP [dm3] X_12598579_SNP [dm6]	T	C	2.798e^-4	0.955	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	7069252	3R_7069252_SNP [dm3] 3R_11243530_SNP [dm6]	T	C	2.816e^-4	0.955	UTR_3_PRIME CG17734 UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7069255	3R_7069255_SNP [dm3] 3R_11243533_SNP [dm6]	G	T	2.816e^-4	0.955	UTR_3_PRIME CG17734 UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7069257	3R_7069257_SNP [dm3] 3R_11243535_SNP [dm6]	T	G	2.816e^-4	0.955	UTR_3_PRIME CG17734 UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	3921143	2R_3921143_SNP [dm3] 2R_8033638_SNP [dm6]	A	T	2.830e^-4	0.955	INTRON Optix
3R	2972978	3R_2972978_INS [dm3] 3R_7147256_INS [dm6]	T	TGACTAAG	2.850e^-4	0.955	INTRON CG2656 & 1 other	TF binding site mE1_TFBS_inv
3R	19571631	3R_19571631_SNP [dm3] 3R_23745909_SNP [dm6]	C	A	2.855e^-4	0.955	INTRON Hmgcr	TF binding site mE1_TFBS_cad
2R	9280463	2R_9280463_SNP [dm3] 2R_13392958_SNP [dm6]	G	A	2.866e^-4	0.955	SYNONYMOUS_CODING CG43691 UPSTREAM AttC
3R	26932345	3R_26932345_SNP [dm3] 3R_31106623_SNP [dm6]	G	A	2.868e^-4	0.955	SYNONYMOUS_CODING CG11318
3L	7281918	3L_7281918_SNP [dm3] 3L_7288818_SNP [dm6]	C	T	2.873e^-4	0.955	INTRON unc-13-4A
3R	26084915	3R_26084915_SNP [dm3] 3R_30259193_SNP [dm6]	T	G	2.876e^-4	0.955	INTERGENIC
3R	26084927	3R_26084927_SNP [dm3] 3R_30259205_SNP [dm6]	A	T	2.876e^-4	0.955	INTERGENIC
3R	26823592	3R_26823592_SNP [dm3] 3R_30997870_SNP [dm6]	G	A	2.876e^-4	0.955	INTRON 5-HT7
3R	20506279	3R_20506279_SNP [dm3] 3R_24680557_SNP [dm6]	C	T	2.878e^-4	0.955	INTRON slo
2L	13329772	2L_13329772_SNP [dm3] 2L_13329772_SNP [dm6]	G	A	2.881e^-4	0.955	INTRON CG43778
3L	5080159	3L_5080159_SNP [dm3] 3L_5080159_SNP [dm6]	T	A	2.892e^-4	0.955	INTERGENIC
X	9978494	X_9978494_SNP [dm3] X_10084461_SNP [dm6]	T	G	2.895e^-4	0.955	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
2L	3071272	2L_3071272_SNP [dm3] 2L_3071272_SNP [dm6]	C	T	2.897e^-4	0.955	SYNONYMOUS_CODING toc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12991074	3L_12991074_SNP [dm3] 3L_12997974_SNP [dm6]	G	A	2.901e^-4	0.955	DOWNSTREAM CG11262 INTERGENIC
2L	16778129	2L_16778129_SNP [dm3] 2L_16778129_SNP [dm6]	G	T	2.910e^-4	0.955	SPLICE_SITE_REGION Mhc INTRON Mhc
X	13642394	X_13642394_SNP [dm3] X_13748361_SNP [dm6]	A	G	2.914e^-4	0.955	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16476642	2R_16476642_SNP [dm3] 2R_20589137_SNP [dm6]	T	C	2.939e^-4	0.955	INTRON bl	TF binding site BDTNP1_TFBS_dl
3L	9865555	3L_9865555_SNP [dm3] 3L_9872455_SNP [dm6]	A	G	2.962e^-4	0.955	INTERGENIC
2R	21079280	2R_21079280_SNP [dm3] 2R_25191757_SNP [dm6]	A	T	2.971e^-4	0.955	INTRON CG9380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17076151	2R_17076151_SNP [dm3] 2R_21188646_SNP [dm6]	T	C	3.011e^-4	0.955	SYNONYMOUS_CODING tud
2R	1025797	2R_1025797_SNP [dm3] 2R_5138292_SNP [dm6]	T	A	3.018e^-4	0.955	INTERGENIC
2R	3012128	2R_3012128_SNP [dm3] 2R_7124623_SNP [dm6]	A	G	3.023e^-4	0.955	INTRON esn	TF binding site mE1_TFBS_chinmo
2L	5808398	2L_5808398_SNP [dm3] 2L_5808398_SNP [dm6]	A	G	3.025e^-4	0.955	SYNONYMOUS_CODING CG11034 UTR_3_PRIME CG11034	TF binding site mE1_TFBS_cad
2L	6131829	2L_6131829_SNP [dm3] 2L_6131829_SNP [dm6]	G	A	3.045e^-4	0.955	SYNONYMOUS_CODING CG9222	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	3613697	2L_3613697_SNP [dm3] 2L_3613697_SNP [dm6]	T	C	3.050e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	12591606	3L_12591606_SNP [dm3] 3L_12598506_SNP [dm6]	C	T	3.068e^-4	0.955	INTERGENIC
2L	1339216	2L_1339216_SNP [dm3] 2L_1339216_SNP [dm6]	A	T	3.086e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	3098453	3L_3098453_SNP [dm3] 3L_3098453_SNP [dm6]	A	C	3.125e^-4	0.955	DOWNSTREAM tRNA:CR32286 INTRON Cht7
2R	18371057	2R_18371057_SNP [dm3] 2R_22483552_SNP [dm6]	G	A	3.128e^-4	0.955	SYNONYMOUS_CODING CG4554 DOWNSTREAM CG4752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9252129	2R_9252129_SNP [dm3] 2R_13364624_SNP [dm6]	C	A	3.135e^-4	0.955	INTERGENIC
2R	9170750	2R_9170750_SNP [dm3] 2R_13283245_SNP [dm6]	T	C	3.180e^-4	0.955	INTRON Dh31-R
2R	9170763	2R_9170763_SNP [dm3] 2R_13283258_SNP [dm6]	C	T	3.180e^-4	0.955	INTRON Dh31-R
X	19396004	X_19396004_DEL [dm3] X_19501971_DEL [dm6]	TACT	T	3.184e^-4	0.955	INTRON Pfrx & 1 other
3L	4685937	3L_4685937_SNP [dm3] 3L_4685937_SNP [dm6]	G	T	3.192e^-4	0.955	INTRON axo
3R	10179019	3R_10179019_DEL [dm3] 3R_14353297_DEL [dm6]	TT	T	3.219e^-4	0.955	INTRON NK7.1
2L	1280286	2L_1280286_SNP [dm3] 2L_1280286_SNP [dm6]	A	G	3.238e^-4	0.955	INTRON robo3
X	16848875	X_16848875_SNP [dm3] X_16954842_SNP [dm6]	G	A	3.285e^-4	0.955	SYNONYMOUS_CODING RhoGAP15B
2R	20021194	2R_20021194_SNP [dm3] 2R_24133671_SNP [dm6]	C	A	3.287e^-4	0.955	UPSTREAM Zfrp8 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3L	18395858	3L_18395858_SNP [dm3] 3L_18402758_SNP [dm6]	C	T	3.298e^-4	0.955	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15535632	3L_15535632_SNP [dm3] 3L_15542532_SNP [dm6]	T	C	3.304e^-4	0.955	INTRON CrebA
X	13710290	X_13710290_SNP [dm3] X_13816257_SNP [dm6]	A	T	3.316e^-4	0.955	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13710309	X_13710309_SNP [dm3] X_13816276_SNP [dm6]	T	G	3.316e^-4	0.955	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9385547	3R_9385547_SNP [dm3] 3R_13559825_SNP [dm6]	C	T	3.365e^-4	0.955	INTERGENIC
3L	5483986	3L_5483986_SNP [dm3] 3L_5490886_SNP [dm6]	T	A	3.388e^-4	0.955	INTERGENIC
2L	5186100	2L_5186100_SNP [dm3] 2L_5186100_SNP [dm6]	C	T	3.416e^-4	0.955	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	15199414	3L_15199414_SNP [dm3] 3L_15206314_SNP [dm6]	A	C	3.421e^-4	0.955	INTERGENIC
3L	11595425	3L_11595425_SNP [dm3] 3L_11602325_SNP [dm6]	A	G	3.432e^-4	0.955	INTRON CG7368	TF binding site mE1_TFBS_inv
3L	11595434	3L_11595434_SNP [dm3] 3L_11602334_SNP [dm6]	G	A	3.432e^-4	0.955	INTRON CG7368	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3R	20436932	3R_20436932_SNP [dm3] 3R_24611210_SNP [dm6]	A	C	3.435e^-4	0.955	INTRON mld
X	15428581	X_15428581_SNP [dm3] X_15534548_SNP [dm6]	T	G	3.444e^-4	0.955	INTRON Ac13E
X	8836745	X_8836745_SNP [dm3] X_8942712_SNP [dm6]	A	C	3.456e^-4	0.955	INTRON rdgA
3R	14437118	3R_14437118_INS [dm3] 3R_18611396_INS [dm6]	T	TT	3.471e^-4	0.955	INTRON qin & 1 other
2R	5983504	2R_5983504_SNP [dm3] 2R_10095999_SNP [dm6]	A	C	3.472e^-4	0.955	UTR_3_PRIME CG2269 UPSTREAM Jra	TF binding site BDTNP1_TFBS_dl
3R	19506121	3R_19506121_SNP [dm3] 3R_23680399_SNP [dm6]	T	A	3.488e^-4	0.955	DOWNSTREAM CG10157 INTRON eIF-3p66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19506130	3R_19506130_SNP [dm3] 3R_23680408_SNP [dm6]	C	A	3.488e^-4	0.955	DOWNSTREAM CG10157 INTRON eIF-3p66	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	1006689	2R_1006689_SNP [dm3] 2R_5119184_SNP [dm6]	T	A	3.493e^-4	0.955	INTRON gus
2L	6196359	2L_6196359_DEL [dm3] 2L_6196359_DEL [dm6]	GG	G	3.493e^-4	0.955	INTRON CG34380
2R	14662928	2R_14662928_SNP [dm3] 2R_18775423_SNP [dm6]	G	C	3.495e^-4	0.955	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25485365	3R_25485365_SNP [dm3] 3R_29659643_SNP [dm6]	A	G	3.503e^-4	0.955	INTRON Dop1R2
2L	19794717	2L_19794717_SNP [dm3] 2L_19794717_SNP [dm6]	C	T	3.514e^-4	0.955	SYNONYMOUS_CODING fs_2_ltoPP43
2L	19798565	2L_19798565_SNP [dm3] 2L_19798565_SNP [dm6]	T	G	3.514e^-4	0.955	INTRON sick
2R	20798580	2R_20798580_SNP [dm3] 2R_24911057_SNP [dm6]	C	A	3.516e^-4	0.955	SYNONYMOUS_CODING NaCP60E UTR_3_PRIME NaCP60E	TF binding site mE1_TFBS_cad
3R	13098119	3R_13098119_SNP [dm3] 3R_17272397_SNP [dm6]	C	T	3.527e^-4	0.955	INTERGENIC
3L	5329792	3L_5329792_SNP [dm3] 3L_5336692_SNP [dm6]	G	A	3.529e^-4	0.955	INTERGENIC
3L	580447	3L_580447_SNP [dm3] 3L_580447_SNP [dm6]	G	A	3.537e^-4	0.955	UTR_3_PRIME hipk UPSTREAM Ppm1
2L	16566349	2L_16566349_SNP [dm3] 2L_16566349_SNP [dm6]	C	T	3.556e^-4	0.955	INTRON CG42389
3L	8187076	3L_8187076_SNP [dm3] 3L_8193976_SNP [dm6]	G	A	3.581e^-4	0.955	SYNONYMOUS_CODING MED24 UPSTREAM CG7387	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	13789001	2R_13789001_SNP [dm3] 2R_17901496_SNP [dm6]	T	C	3.589e^-4	0.955	INTRON Elk
3R	7957244	3R_7957244_DEL [dm3] 3R_12131522_DEL [dm6]	ATGATTTAA	A	3.593e^-4	0.955	DOWNSTREAM tRNA:K5:87BC INTERGENIC
2R	4382071	2R_4382071_DEL [dm3] 2R_8494566_DEL [dm6]	CC	C	3.612e^-4	0.955	UPSTREAM mtt INTRON mtt
3L	3098451	3L_3098451_SNP [dm3] 3L_3098451_SNP [dm6]	T	A	3.648e^-4	0.955	DOWNSTREAM tRNA:CR32286 INTRON Cht7
3L	904624	3L_904624_SNP [dm3] 3L_904624_SNP [dm6]	C	G	3.665e^-4	0.955	DOWNSTREAM CG13905 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19079349	3L_19079349_SNP [dm3] 3L_19086249_SNP [dm6]	A	G	3.683e^-4	0.955	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079478	3L_19079478_SNP [dm3] 3L_19086378_SNP [dm6]	C	T	3.683e^-4	0.955	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079485	3L_19079485_SNP [dm3] 3L_19086385_SNP [dm6]	A	T	3.683e^-4	0.955	UTR_5_PRIME Mkp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	19079610	3L_19079610_SNP [dm3] 3L_19086510_SNP [dm6]	T	C	3.683e^-4	0.955	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4683650	2L_4683650_SNP [dm3] 2L_4683650_SNP [dm6]	C	T	3.685e^-4	0.955	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi
3L	1411323	3L_1411323_SNP [dm3] 3L_1411323_SNP [dm6]	A	C	3.689e^-4	0.955	NON_SYNONYMOUS_CODING CG9168 INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6670604	2R_6670604_INS [dm3] 2R_10783099_INS [dm6]	T	TT	3.701e^-4	0.955	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	6825901	3L_6825901_SNP [dm3] 3L_6832801_SNP [dm6]	A	C	3.731e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
3R	19540832	3R_19540832_SNP [dm3] 3R_23715110_SNP [dm6]	G	A	3.745e^-4	0.955	INTRON nau
2L	15615062	2L_15615062_SNP [dm3] 2L_15615062_SNP [dm6]	C	T	3.764e^-4	0.955	UPSTREAM CG15254 DOWNSTREAM CG15253 INTERGENIC
2L	17001668	2L_17001668_SNP [dm3] 2L_17001668_SNP [dm6]	T	A	3.781e^-4	0.955	INTERGENIC
2L	12713688	2L_12713688_SNP [dm3] 2L_12713688_SNP [dm6]	C	T	3.789e^-4	0.955	NON_SYNONYMOUS_CODING CG5792 UPSTREAM CG5787 DOWNSTREAM CG5792
3R	10178950	3R_10178950_SNP [dm3] 3R_14353228_SNP [dm6]	G	A	3.800e^-4	0.955	INTRON NK7.1
X	10045174	X_10045174_SNP [dm3] X_10151141_SNP [dm6]	A	T	3.816e^-4	0.955	INTRON CR44894
2L	15739980	2L_15739980_SNP [dm3] 2L_15739980_SNP [dm6]	C	A	3.823e^-4	0.955	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	21054234	2R_21054234_SNP [dm3] 2R_25166711_SNP [dm6]	T	C	3.832e^-4	0.955	UPSTREAM CG34038 INTERGENIC
2R	17757692	2R_17757692_SNP [dm3] 2R_21870187_SNP [dm6]	G	A	3.844e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	8353926	3L_8353926_SNP [dm3] 3L_8360826_SNP [dm6]	G	A	3.847e^-4	0.955	UTR_5_PRIME Idh UPSTREAM Idh	TF binding site mE1_TFBS_Trl
3R	4927507	3R_4927507_SNP [dm3] 3R_9101785_SNP [dm6]	C	T	3.860e^-4	0.955	INTRON pum
2L	4731373	2L_4731373_SNP [dm3] 2L_4731373_SNP [dm6]	T	C	3.864e^-4	0.955	INTERGENIC
3L	2959712	3L_2959712_SNP [dm3] 3L_2959712_SNP [dm6]	A	T	3.877e^-4	0.955	DOWNSTREAM CG34025 & 1 other INTERGENIC
X	17115482	X_17115482_SNP [dm3] X_17221449_SNP [dm6]	A	G	3.882e^-4	0.955	UTR_5_PRIME CG5172
X	17115506	X_17115506_SNP [dm3] X_17221473_SNP [dm6]	A	G	3.882e^-4	0.955	START_GAINED CG5172 UTR_5_PRIME CG5172
2L	958782	2L_958782_SNP [dm3] 2L_958782_SNP [dm6]	G	A	3.884e^-4	0.955	DOWNSTREAM CG4341 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4482781	2L_4482781_SNP [dm3] 2L_4482781_SNP [dm6]	A	T	3.891e^-4	0.955	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7226583	2L_7226583_INS [dm3] 2L_7226583_INS [dm6]	A	ACTTAAAA	3.891e^-4	0.955	UTR_3_PRIME Ndae1 INTRON Ndae1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv mE1_TFBS_run
3L	12753108	3L_12753108_SNP [dm3] 3L_12760008_SNP [dm6]	C	A	3.894e^-4	0.955	SYNONYMOUS_CODING CG32113
3L	19003429	3L_19003429_SNP [dm3] 3L_19010329_SNP [dm6]	A	T	3.899e^-4	0.955	INTRON nkd	TF binding site mE1_TFBS_inv
3L	4566576	3L_4566576_SNP [dm3] 3L_4566576_SNP [dm6]	A	G	3.903e^-4	0.955	INTRON CG42540
2L	7455696	2L_7455696_SNP [dm3] 2L_7455696_SNP [dm6]	G	A	3.908e^-4	0.955	SYNONYMOUS_CODING Gr28b	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17828294	3L_17828294_SNP [dm3] 3L_17835194_SNP [dm6]	T	G	3.915e^-4	0.955	UPSTREAM CG32189 INTRON Grd
2L	17042300	2L_17042300_SNP [dm3] 2L_17042300_SNP [dm6]	A	C	3.915e^-4	0.955	DOWNSTREAM CR43802 INTERGENIC
3L	5373966	3L_5373966_SNP [dm3] 3L_5380866_SNP [dm6]	T	A	3.916e^-4	0.955	INTRON Ir64a
2L	16778696	2L_16778696_SNP [dm3] 2L_16778696_SNP [dm6]	G	A	3.918e^-4	0.955	INTRON Mhc
2L	19798193	2L_19798193_SNP [dm3] 2L_19798193_SNP [dm6]	G	A	3.938e^-4	0.955	INTRON sick
2L	847504	2L_847504_MNP [dm3] 2L_847504_MNP [dm6]	TTT	ACA	3.942e^-4	0.955	INTRON drongo
3L	19080853	3L_19080853_SNP [dm3] 3L_19087753_SNP [dm6]	A	G	3.944e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
2R	2123862	2R_2123862_SNP [dm3] 2R_6236357_SNP [dm6]	C	A	3.953e^-4	0.955	INTRON bin3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
X	5427578	X_5427578_SNP [dm3] X_5533545_SNP [dm6]	A	C	3.956e^-4	0.955	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15441332	2L_15441332_SNP [dm3] 2L_15441332_SNP [dm6]	C	G	3.961e^-4	0.955	UPSTREAM CR44862 INTERGENIC
X	11588961	X_11588961_SNP [dm3] X_11694928_SNP [dm6]	A	T	3.965e^-4	0.955	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	11589009	X_11589009_SNP [dm3] X_11694976_SNP [dm6]	G	T	3.965e^-4	0.955	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	11589166	X_11589166_SNP [dm3] X_11695133_SNP [dm6]	A	G	3.965e^-4	0.955	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
2R	20024118	2R_20024118_SNP [dm3] 2R_24136595_SNP [dm6]	T	C	3.967e^-4	0.955	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19064764	3R_19064764_SNP [dm3] 3R_23239042_SNP [dm6]	A	T	3.976e^-4	0.955	INTRON CG4467	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	1746794	2L_1746794_DEL [dm3] 2L_1746794_DEL [dm6]	AA	A	3.976e^-4	0.955	INTRON CG17646
2L	16778658	2L_16778658_SNP [dm3] 2L_16778658_SNP [dm6]	T	A	3.988e^-4	0.955	INTRON Mhc
3R	12300033	3R_12300033_SNP [dm3] 3R_16474311_SNP [dm6]	A	G	4.003e^-4	0.955	SYNONYMOUS_CODING Gyc-89Da	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19894953	2R_19894953_SNP [dm3] 2R_24007430_SNP [dm6]	G	C	4.009e^-4	0.955	INTRON Unc-89
2L	11331143	2L_11331143_SNP [dm3] 2L_11331143_SNP [dm6]	T	C	4.011e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
2L	11331145	2L_11331145_SNP [dm3] 2L_11331145_SNP [dm6]	T	A	4.011e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
3L	3268852	3L_3268852_SNP [dm3] 3L_3268852_SNP [dm6]	T	C	4.013e^-4	0.955	SYNONYMOUS_CODING CG34265 DOWNSTREAM ckd
2R	9159471	2R_9159471_SNP [dm3] 2R_13271966_SNP [dm6]	T	A	4.024e^-4	0.955	INTRON Dh31-R
3R	6196083	3R_6196083_SNP [dm3] 3R_10370361_SNP [dm6]	C	A	4.024e^-4	0.955	INTRON Rfx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9936615	3L_9936615_SNP [dm3] 3L_9943515_SNP [dm6]	A	C	4.047e^-4	0.955	INTRON CG34356
3L	12591583	3L_12591583_SNP [dm3] 3L_12598483_SNP [dm6]	A	C	4.047e^-4	0.955	INTERGENIC
2L	8847358	2L_8847358_SNP [dm3] 2L_8847358_SNP [dm6]	A	G	4.056e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
3R	26932078	3R_26932078_SNP [dm3] 3R_31106356_SNP [dm6]	T	C	4.089e^-4	0.955	DOWNSTREAM CG11318 INTERGENIC
2L	7723733	2L_7723733_SNP [dm3] 2L_7723733_SNP [dm6]	T	C	4.090e^-4	0.955	SYNONYMOUS_CODING CG13795 UPSTREAM CG13794
3L	7097308	3L_7097308_SNP [dm3] 3L_7104208_SNP [dm6]	A	G	4.104e^-4	0.955	INTRON form3
2R	7550372	2R_7550372_SNP [dm3] 2R_11662867_SNP [dm6]	G	A	4.105e^-4	0.955	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	5421774	3L_5421774_SNP [dm3] 3L_5428674_SNP [dm6]	G	A	4.117e^-4	0.955	INTRON CG34391
2L	7477374	2L_7477374_SNP [dm3] 2L_7477374_SNP [dm6]	A	G	4.136e^-4	0.955	SYNONYMOUS_CODING Ziz DOWNSTREAM CG6441	TF binding site mE1_TFBS_cad
2L	11158405	2L_11158405_SNP [dm3] 2L_11158405_SNP [dm6]	T	A	4.142e^-4	0.955	UTR_3_PRIME Ca-beta
2L	10815191	2L_10815191_SNP [dm3] 2L_10815191_SNP [dm6]	G	T	4.146e^-4	0.955	INTRON Nos
3L	10189628	3L_10189628_SNP [dm3] 3L_10196528_SNP [dm6]	A	T	4.157e^-4	0.955	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	10189649	3L_10189649_DEL [dm3] 3L_10196549_DEL [dm6]	TG	T	4.157e^-4	0.955	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	4033616	3L_4033616_SNP [dm3] 3L_4033616_SNP [dm6]	G	A	4.158e^-4	0.955	UTR_5_PRIME Gr64e UTR_3_PRIME Gr64d UPSTREAM Gr64e DOWNSTREAM CR45042 & 1 other
3L	17703652	3L_17703652_SNP [dm3] 3L_17710552_SNP [dm6]	G	C	4.162e^-4	0.955	INTRON Ccn
3L	3135987	3L_3135987_SNP [dm3] 3L_3135987_SNP [dm6]	C	T	4.162e^-4	0.955	INTRON CG11537
2R	9582960	2R_9582960_SNP [dm3] 2R_13695455_SNP [dm6]	C	T	4.202e^-4	0.955	INTRON fas
2R	9582965	2R_9582965_SNP [dm3] 2R_13695460_SNP [dm6]	T	A	4.202e^-4	0.955	INTRON fas
3R	18584300	3R_18584300_SNP [dm3] 3R_22758578_SNP [dm6]	C	T	4.203e^-4	0.955	DOWNSTREAM CG4725 INTRON Usp12-46 & 1 other
3R	13892814	3R_13892814_SNP [dm3] 3R_18067092_SNP [dm6]	A	G	4.203e^-4	0.955	INTERGENIC
2L	7481096	2L_7481096_SNP [dm3] 2L_7481096_SNP [dm6]	G	A	4.220e^-4	0.955	SYNONYMOUS_CODING Ziz
2R	18378917	2R_18378917_SNP [dm3] 2R_22491412_SNP [dm6]	A	G	4.223e^-4	0.955	SYNONYMOUS_CODING CG4554 UPSTREAM CG4610	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2R	9280403	2R_9280403_SNP [dm3] 2R_13392898_SNP [dm6]	C	A	4.230e^-4	0.955	SYNONYMOUS_CODING CG43691 UPSTREAM AttC
2R	9280409	2R_9280409_SNP [dm3] 2R_13392904_SNP [dm6]	T	C	4.230e^-4	0.955	SYNONYMOUS_CODING CG43691 UPSTREAM AttC
X	13173400	X_13173400_SNP [dm3] X_13279367_SNP [dm6]	G	A	4.233e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	13173411	X_13173411_DEL [dm3] X_13279378_DEL [dm6]	AACA	A	4.233e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	16709268	3R_16709268_SNP [dm3] 3R_20883546_SNP [dm6]	G	A	4.250e^-4	0.955	INTERGENIC
2R	14663073	2R_14663073_SNP [dm3] 2R_18775568_SNP [dm6]	A	G	4.260e^-4	0.955	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	9978521	X_9978521_SNP [dm3] X_10084488_SNP [dm6]	A	G	4.275e^-4	0.955	SYNONYMOUS_CODING CG2972 DOWNSTREAM CG2974	TF binding site mE1_TFBS_cad
3L	3860809	3L_3860809_SNP [dm3] 3L_3860809_SNP [dm6]	G	T	4.284e^-4	0.955	INTRON Awh
X	8617770	X_8617770_SNP [dm3] X_8723737_SNP [dm6]	G	T	4.290e^-4	0.955	UPSTREAM CR43297 INTERGENIC
3R	26473493	3R_26473493_SNP [dm3] 3R_30647771_SNP [dm6]	A	T	4.315e^-4	0.955	NON_SYNONYMOUS_CODING PH4alphaPV
2L	19794504	2L_19794504_SNP [dm3] 2L_19794504_SNP [dm6]	C	T	4.331e^-4	0.955	UTR_3_PRIME fs_2_ltoPP43 INTRON fs_2_ltoPP43
X	4263431	X_4263431_SNP [dm3] X_4369398_SNP [dm6]	T	C	4.337e^-4	0.955	UPSTREAM mir-983-1 & 2 others INTRON CR43614 & 1 other
2R	4382038	2R_4382038_SNP [dm3] 2R_8494533_SNP [dm6]	G	T	4.343e^-4	0.955	UPSTREAM mtt INTRON mtt
2L	11331146	2L_11331146_SNP [dm3] 2L_11331146_SNP [dm6]	T	C	4.353e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
3L	12752287	3L_12752287_SNP [dm3] 3L_12759187_SNP [dm6]	T	C	4.371e^-4	0.955	NON_SYNONYMOUS_CODING CG32113
2L	11319295	2L_11319295_SNP [dm3] 2L_11319295_SNP [dm6]	T	A	4.371e^-4	0.955	DOWNSTREAM CR44583 INTERGENIC
3L	12430439	3L_12430439_SNP [dm3] 3L_12437339_SNP [dm6]	G	T	4.377e^-4	0.955	INTERGENIC
3L	12430443	3L_12430443_SNP [dm3] 3L_12437343_SNP [dm6]	T	A	4.377e^-4	0.955	INTERGENIC
3L	12430452	3L_12430452_SNP [dm3] 3L_12437352_SNP [dm6]	T	A	4.377e^-4	0.955	INTERGENIC
3L	12430480	3L_12430480_SNP [dm3] 3L_12437380_SNP [dm6]	A	C	4.377e^-4	0.955	INTERGENIC
2R	14661124	2R_14661124_SNP [dm3] 2R_18773619_SNP [dm6]	T	A	4.395e^-4	0.955	INTRON Mctp
2L	13714173	2L_13714173_SNP [dm3] 2L_13714173_SNP [dm6]	A	C	4.402e^-4	0.955	SPLICE_SITE_REGION CG31814 UTR_5_PRIME CG31814 INTRON CG31814
X	16219224	X_16219224_SNP [dm3] X_16325191_SNP [dm6]	T	A	4.406e^-4	0.955	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
X	16219227	X_16219227_SNP [dm3] X_16325194_SNP [dm6]	T	C	4.406e^-4	0.955	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579
2R	16092496	2R_16092496_SNP [dm3] 2R_20204991_SNP [dm6]	T	G	4.409e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	10865045	X_10865045_SNP [dm3] X_10971012_SNP [dm6]	A	G	4.438e^-4	0.955	INTRON CG42339
X	5998872	X_5998872_SNP [dm3] X_6104839_SNP [dm6]	C	T	4.465e^-4	0.955	UTR_3_PRIME Ca-alpha1T DOWNSTREAM Nep1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5998878	X_5998878_SNP [dm3] X_6104845_SNP [dm6]	T	C	4.465e^-4	0.955	UTR_3_PRIME Ca-alpha1T DOWNSTREAM Nep1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12227398	2R_12227398_SNP [dm3] 2R_16339893_SNP [dm6]	T	C	4.476e^-4	0.955	SYNONYMOUS_CODING Hmgs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	4284873	X_4284873_SNP [dm3] X_4390840_SNP [dm6]	C	G	4.476e^-4	0.955	INTRON CR32773	TF binding site mE1_TFBS_Kr
2R	12810826	2R_12810826_SNP [dm3] 2R_16923321_SNP [dm6]	C	A	4.514e^-4	0.955	INTERGENIC
2R	19493516	2R_19493516_SNP [dm3] 2R_23605993_SNP [dm6]	T	C	4.516e^-4	0.955	UPSTREAM CG17664 INTRON CG17664 & 1 other
3R	16326654	3R_16326654_SNP [dm3] 3R_20500932_SNP [dm6]	G	A	4.516e^-4	0.955	SYNONYMOUS_CODING Dic2
X	12608003	X_12608003_SNP [dm3] X_12713970_SNP [dm6]	C	A	4.527e^-4	0.955	SYNONYMOUS_CODING Smr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Mad mE1_TFBS_HSA
2L	7481099	2L_7481099_SNP [dm3] 2L_7481099_SNP [dm6]	G	T	4.534e^-4	0.955	SYNONYMOUS_CODING Ziz
2L	12120007	2L_12120007_DEL [dm3] 2L_12120007_DEL [dm6]	CTTTGGATAC	C	4.553e^-4	0.955	INTRON CG17211
2L	8494114	2L_8494114_SNP [dm3] 2L_8494114_SNP [dm6]	T	G	4.574e^-4	0.955	DOWNSTREAM Bace INTRON Dh31
2L	6128715	2L_6128715_SNP [dm3] 2L_6128715_SNP [dm6]	C	A	4.577e^-4	0.955	NON_SYNONYMOUS_CODING tectonic UTR_3_PRIME CG42730 UPSTREAM WDR79	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6324686	3L_6324686_SNP [dm3] 3L_6331586_SNP [dm6]	T	C	4.584e^-4	0.955	NON_SYNONYMOUS_CODING CG13300	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3830014	2L_3830014_SNP [dm3] 2L_3830014_SNP [dm6]	A	T	4.584e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3830053	2L_3830053_SNP [dm3] 2L_3830053_SNP [dm6]	A	T	4.584e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13960175	2R_13960175_SNP [dm3] 2R_18072670_SNP [dm6]	T	C	4.584e^-4	0.955	INTRON CG34386
2L	11319292	2L_11319292_INS [dm3] 2L_11319292_INS [dm6]	T	TGCAATG	4.591e^-4	0.955	DOWNSTREAM CR44583 INTERGENIC
X	9100336	X_9100336_SNP [dm3] X_9206303_SNP [dm6]	G	A	4.592e^-4	0.955	UTR_3_PRIME CG12119
3L	22961891	3L_22961891_SNP [dm3] 3L_22968791_SNP [dm6]	C	A	4.614e^-4	0.955	INTERGENIC	transposable element FlyBase
X	13710277	X_13710277_SNP [dm3] X_13816244_SNP [dm6]	C	G	4.615e^-4	0.955	INTRON Clic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10706885	2L_10706885_SNP [dm3] 2L_10706885_SNP [dm6]	A	G	4.618e^-4	0.955	UPSTREAM Lip2 INTRON Lip2	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	16578817	2L_16578817_SNP [dm3] 2L_16578817_SNP [dm6]	G	C	4.625e^-4	0.955	INTRON CG42389
2R	15844066	2R_15844066_SNP [dm3] 2R_19956561_SNP [dm6]	T	C	4.631e^-4	0.955	INTRON CG44623
X	11671017	X_11671017_SNP [dm3] X_11776984_SNP [dm6]	A	G	4.632e^-4	0.955	INTRON dy	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	11344212	3L_11344212_SNP [dm3] 3L_11351112_SNP [dm6]	T	A	4.635e^-4	0.955	INTERGENIC
2L	7560648	2L_7560648_SNP [dm3] 2L_7560648_SNP [dm6]	T	C	4.646e^-4	0.955	INTRON RapGAP1
3L	16999975	3L_16999975_SNP [dm3] 3L_17006875_SNP [dm6]	C	T	4.655e^-4	0.955	INTRON CG3764
2L	13256451	2L_13256451_SNP [dm3] 2L_13256451_SNP [dm6]	C	A	4.656e^-4	0.955	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3700722	2L_3700722_SNP [dm3] 2L_3700722_SNP [dm6]	C	T	4.668e^-4	0.955	NON_SYNONYMOUS_CODING Sfp24C1 UPSTREAM CG42467 DOWNSTREAM CG42464 & 1 other
2R	9252233	2R_9252233_SNP [dm3] 2R_13364728_SNP [dm6]	A	G	4.669e^-4	0.955	INTERGENIC
3R	5102001	3R_5102001_SNP [dm3] 3R_9276279_SNP [dm6]	C	G	4.694e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7671676	2R_7671676_SNP [dm3] 2R_11784171_SNP [dm6]	T	G	4.695e^-4	0.955	INTRON ths
3R	24815810	3R_24815810_SNP [dm3] 3R_28990088_SNP [dm6]	C	T	4.699e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	9583051	2R_9583051_SNP [dm3] 2R_13695546_SNP [dm6]	G	A	4.715e^-4	0.955	INTRON fas
2L	12196245	2L_12196245_SNP [dm3] 2L_12196245_SNP [dm6]	C	T	4.728e^-4	0.955	INTRON aret	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	10361750	3L_10361750_SNP [dm3] 3L_10368650_SNP [dm6]	G	C	4.730e^-4	0.955	INTERGENIC
3L	11844887	3L_11844887_SNP [dm3] 3L_11851787_SNP [dm6]	A	G	4.739e^-4	0.955	SYNONYMOUS_CODING CG44837	TF binding site mE1_TFBS_chinmo
2R	7221211	2R_7221211_SNP [dm3] 2R_11333706_SNP [dm6]	T	C	4.762e^-4	0.955	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2132792	2R_2132792_SNP [dm3] 2R_6245287_SNP [dm6]	A	T	4.769e^-4	0.955	UPSTREAM Pld INTRON Pld	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	13904416	2L_13904416_SNP [dm3] 2L_13904416_SNP [dm6]	T	G	4.777e^-4	0.955	UTR_5_PRIME Smg5 UPSTREAM Smg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_run
3L	5876334	3L_5876334_SNP [dm3] 3L_5883234_SNP [dm6]	C	T	4.789e^-4	0.955	SYNONYMOUS_CODING CG13287	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	7193378	X_7193378_SNP [dm3] X_7299345_SNP [dm6]	C	T	4.792e^-4	0.955	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna mE1_TFBS_HSA
X	7193526	X_7193526_DEL [dm3] X_7299493_DEL [dm6]	TTAGATTT	CC	4.792e^-4	0.955	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7193589	X_7193589_SNP [dm3] X_7299556_SNP [dm6]	G	A	4.792e^-4	0.955	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12211568	2L_12211568_SNP [dm3] 2L_12211568_SNP [dm6]	G	A	4.794e^-4	0.955	INTRON aret
3L	12591576	3L_12591576_SNP [dm3] 3L_12598476_SNP [dm6]	T	C	4.797e^-4	0.955	INTERGENIC
3L	19080056	3L_19080056_SNP [dm3] 3L_19086956_SNP [dm6]	C	T	4.807e^-4	0.955	UPSTREAM Mkp3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	4646482	2R_4646482_SNP [dm3] 2R_8758977_SNP [dm6]	T	G	4.824e^-4	0.955	INTRON CG8740	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	7479508	2L_7479508_SNP [dm3] 2L_7479508_SNP [dm6]	A	C	4.826e^-4	0.955	SYNONYMOUS_CODING Ziz	TF binding site mE1_TFBS_cad
2L	13904339	2L_13904339_SNP [dm3] 2L_13904339_SNP [dm6]	A	T	4.842e^-4	0.955	UTR_5_PRIME Smg5 UPSTREAM Smg5 INTRON Smg5	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_run
3R	23540058	3R_23540058_SNP [dm3] 3R_27714336_SNP [dm6]	G	A	4.849e^-4	0.955	INTERGENIC
3L	17878693	3L_17878693_SNP [dm3] 3L_17885593_SNP [dm6]	T	G	4.867e^-4	0.955	UPSTREAM CR42548 DOWNSTREAM CG16775 INTERGENIC	transposable element FlyBase
2R	6576691	2R_6576691_SNP [dm3] 2R_10689186_SNP [dm6]	T	C	4.878e^-4	0.955	INTRON stan
3L	9943884	3L_9943884_SNP [dm3] 3L_9950784_SNP [dm6]	G	A	4.881e^-4	0.955	INTRON CG34356
3R	16324448	3R_16324448_SNP [dm3] 3R_20498726_SNP [dm6]	G	T	4.899e^-4	0.955	INTERGENIC
3L	2724075	3L_2724075_SNP [dm3] 3L_2724075_SNP [dm6]	A	G	4.903e^-4	0.955	INTRON Mrtf
2R	9429439	2R_9429439_SNP [dm3] 2R_13541934_SNP [dm6]	A	T	4.913e^-4	0.955	INTRON CG6145	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	9170717	2R_9170717_INS [dm3] 2R_13283212_INS [dm6]	T	TTA	4.927e^-4	0.955	INTRON Dh31-R
2R	1007292	2R_1007292_SNP [dm3] 2R_5119787_SNP [dm6]	C	T	4.929e^-4	0.955	INTRON gus
2R	1010541	2R_1010541_SNP [dm3] 2R_5123036_SNP [dm6]	T	A	4.929e^-4	0.955	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_zfh1
2L	17605716	2L_17605716_DEL [dm3] 2L_17605716_DEL [dm6]	TTT	T	4.930e^-4	0.955	DOWNSTREAM CR44412 INTERGENIC
3L	18303219	3L_18303219_SNP [dm3] 3L_18310119_SNP [dm6]	G	C	4.943e^-4	0.955	INTERGENIC
X	9586313	X_9586313_SNP [dm3] X_9692280_SNP [dm6]	C	A	4.960e^-4	0.955	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	1011300	2R_1011300_SNP [dm3] 2R_5123795_SNP [dm6]	T	C	4.962e^-4	0.955	INTRON gus	TF binding site BDTNP1_TFBS_dl
2R	4465787	2R_4465787_SNP [dm3] 2R_8578282_SNP [dm6]	T	C	4.977e^-4	0.955	START_GAINED CG42326 UTR_5_PRIME CG42326 INTRON CG42326
2R	4465788	2R_4465788_SNP [dm3] 2R_8578283_SNP [dm6]	A	C	4.977e^-4	0.955	UTR_5_PRIME CG42326 INTRON CG42326
3L	18319793	3L_18319793_SNP [dm3] 3L_18326693_SNP [dm6]	T	A	4.986e^-4	0.955	INTERGENIC
2R	3322229	2R_3322229_SNP [dm3] 2R_7434724_SNP [dm6]	T	C	5.021e^-4	0.955	UTR_3_PRIME so	TF binding site mE1_TFBS_cad
3L	19203799	3L_19203799_SNP [dm3] 3L_19210699_SNP [dm6]	A	C	5.043e^-4	0.955	INTRON fz2	TF binding site mE1_TFBS_Kr
X	14767748	X_14767748_SNP [dm3] X_14873715_SNP [dm6]	G	T	5.057e^-4	0.955	INTRON Flo2
3R	23361087	3R_23361087_INS [dm3] 3R_27535365_INS [dm6]	A	ACA	5.068e^-4	0.955	DOWNSTREAM CR44289 INTERGENIC
2L	1961650	2L_1961650_SNP [dm3] 2L_1961650_SNP [dm6]	T	A	5.069e^-4	0.955	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6972862	2R_6972862_DEL [dm3] 2R_11085357_DEL [dm6]	CAGCGGGCTGC...	C	5.085e^-4	0.955	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	15198492	3R_15198492_SNP [dm3] 3R_19372770_SNP [dm6]	T	C	5.088e^-4	0.955	DOWNSTREAM CG3581 INTRON Ino80	TF binding site BDTNP1_TFBS_hb
3L	13188721	3L_13188721_SNP [dm3] 3L_13195621_SNP [dm6]	C	A	5.088e^-4	0.955	INTERGENIC
3R	26684809	3R_26684809_SNP [dm3] 3R_30859087_SNP [dm6]	T	A	5.089e^-4	0.955	INTERGENIC
3L	16139912	3L_16139912_SNP [dm3] 3L_16146812_SNP [dm6]	T	C	5.092e^-4	0.955	INTRON CG5151
2R	14201605	2R_14201605_SNP [dm3] 2R_18314100_SNP [dm6]	C	G	5.094e^-4	0.955	INTRON sbb	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	10858267	3L_10858267_SNP [dm3] 3L_10865167_SNP [dm6]	C	A	5.098e^-4	0.955	INTRON tna
3R	27665465	3R_27665465_SNP [dm3] 3R_31839743_SNP [dm6]	T	A	5.111e^-4	0.955	INTRON RhoGAP100F
2R	1367530	2R_1367530_SNP [dm3] 2R_5480025_SNP [dm6]	C	G	5.115e^-4	0.955	INTRON CG30440	transposable element FlyBase
2L	11331084	2L_11331084_SNP [dm3] 2L_11331084_SNP [dm6]	T	G	5.121e^-4	0.955	DOWNSTREAM CR44584 INTERGENIC
2L	12120425	2L_12120425_SNP [dm3] 2L_12120425_SNP [dm6]	G	A	5.122e^-4	0.955	INTRON CG17211
3L	2050491	3L_2050491_SNP [dm3] 3L_2050491_SNP [dm6]	C	T	5.131e^-4	0.955	NON_SYNONYMOUS_CODING sls
3L	2042079	3L_2042079_SNP [dm3] 3L_2042079_SNP [dm6]	C	T	5.133e^-4	0.955	INTRON sls
3R	17243478	3R_17243478_SNP [dm3] 3R_21417756_SNP [dm6]	C	A	5.153e^-4	0.955	INTRON lbl	TF binding site mE1_TFBS_cad
3R	17243483	3R_17243483_SNP [dm3] 3R_21417761_SNP [dm6]	A	T	5.153e^-4	0.955	INTRON lbl	TF binding site mE1_TFBS_cad
3L	2336964	3L_2336964_SNP [dm3] 3L_2336964_SNP [dm6]	T	C	5.159e^-4	0.955	INTRON MsR1
2L	756336	2L_756336_SNP [dm3] 2L_756336_SNP [dm6]	A	G	5.159e^-4	0.955	SPLICE_SITE_REGION GABA-B-R3 SYNONYMOUS_CODING GABA-B-R3 INTRON GABA-B-R3
3R	7069082	3R_7069082_SNP [dm3] 3R_11243360_SNP [dm6]	T	G	5.168e^-4	0.955	UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	7069280	3R_7069280_SNP [dm3] 3R_11243558_SNP [dm6]	T	C	5.168e^-4	0.955	SYNONYMOUS_CODING CG17734 UPSTREAM CG5214 INTRON CG17734	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2L	5518881	2L_5518881_SNP [dm3] 2L_5518881_SNP [dm6]	G	A	5.170e^-4	0.955	UTR_3_PRIME CG14020 DOWNSTREAM CG7382	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_sens
3L	731657	3L_731657_SNP [dm3] 3L_731657_SNP [dm6]	T	C	5.176e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
3L	731658	3L_731658_SNP [dm3] 3L_731658_SNP [dm6]	T	A	5.176e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_sbb
2L	847488	2L_847488_SNP [dm3] 2L_847488_SNP [dm6]	G	A	5.180e^-4	0.955	INTRON drongo
2L	847491	2L_847491_SNP [dm3] 2L_847491_SNP [dm6]	A	C	5.180e^-4	0.955	INTRON drongo
2L	847494	2L_847494_MNP [dm3] 2L_847494_MNP [dm6]	CTA	GGT	5.180e^-4	0.955	INTRON drongo
2L	847498	2L_847498_SNP [dm3] 2L_847498_SNP [dm6]	C	T	5.180e^-4	0.955	INTRON drongo
2L	847508	2L_847508_SNP [dm3] 2L_847508_SNP [dm6]	A	C	5.180e^-4	0.955	INTRON drongo
3L	1832416	3L_1832416_SNP [dm3] 3L_1832416_SNP [dm6]	C	G	5.183e^-4	0.955	UPSTREAM Cpr62Ba DOWNSTREAM Cpr62Bb INTERGENIC
X	21027346	X_21027346_SNP [dm3] X_21156319_SNP [dm6]	G	C	5.192e^-4	0.955	UPSTREAM CR45499 EXON CR32511
3R	20471092	3R_20471092_SNP [dm3] 3R_24645370_SNP [dm6]	C	A	5.196e^-4	0.955	SYNONYMOUS_CODING puf	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	13411327	X_13411327_SNP [dm3] X_13517294_SNP [dm6]	G	A	5.200e^-4	0.955	INTRON Neto
3L	1233699	3L_1233699_SNP [dm3] 3L_1233699_SNP [dm6]	T	C	5.213e^-4	0.955	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1233700	3L_1233700_SNP [dm3] 3L_1233700_SNP [dm6]	T	C	5.213e^-4	0.955	UPSTREAM CG33966 DOWNSTREAM mwh INTRON CG33965	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	19068267	X_19068267_DEL [dm3] X_19174234_DEL [dm6]	AA	A	5.216e^-4	0.955	INTRON pncr004:X
X	19068270	X_19068270_SNP [dm3] X_19174237_SNP [dm6]	T	G	5.216e^-4	0.955	INTRON pncr004:X
X	19068272	X_19068272_SNP [dm3] X_19174239_SNP [dm6]	T	A	5.216e^-4	0.955	INTRON pncr004:X
X	19068284	X_19068284_DEL [dm3] X_19174251_DEL [dm6]	TTA	T	5.216e^-4	0.955	INTRON pncr004:X
X	19068294	X_19068294_SNP [dm3] X_19174261_SNP [dm6]	G	A	5.216e^-4	0.955	INTRON pncr004:X
X	19068520	X_19068520_SNP [dm3] X_19174487_SNP [dm6]	C	A	5.216e^-4	0.955	INTRON pncr004:X
2R	16577558	2R_16577558_SNP [dm3] 2R_20690053_SNP [dm6]	C	G	5.225e^-4	0.955	INTERGENIC
3R	20537691	3R_20537691_SNP [dm3] 3R_24711969_SNP [dm6]	C	T	5.234e^-4	0.955	UPSTREAM CG13627 DOWNSTREAM slo INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20538756	3R_20538756_SNP [dm3] 3R_24713034_SNP [dm6]	C	A	5.234e^-4	0.955	UTR_5_PRIME CG13627
2L	10959645	2L_10959645_SNP [dm3] 2L_10959645_SNP [dm6]	T	C	5.258e^-4	0.955	INTRON dpr2
3L	1604012	3L_1604012_SNP [dm3] 3L_1604012_SNP [dm6]	A	G	5.268e^-4	0.955	SYNONYMOUS_CODING CG18170 UTR_5_PRIME CG33791 UPSTREAM CG33791
3R	16672729	3R_16672729_SNP [dm3] 3R_20847007_SNP [dm6]	G	A	5.271e^-4	0.955	UPSTREAM CG15696 INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14662730	2R_14662730_SNP [dm3] 2R_18775225_SNP [dm6]	C	G	5.279e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	19794695	2L_19794695_SNP [dm3] 2L_19794695_SNP [dm6]	G	T	5.296e^-4	0.955	NON_SYNONYMOUS_CODING fs_2_ltoPP43
3R	26069648	3R_26069648_SNP [dm3] 3R_30243926_SNP [dm6]	G	A	5.300e^-4	0.955	UPSTREAM CG9737 DOWNSTREAM CG9733 INTERGENIC
2R	7549768	2R_7549768_SNP [dm3] 2R_11662263_SNP [dm6]	A	G	5.319e^-4	0.955	INTRON Roc2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5436596	2L_5436596_SNP [dm3] 2L_5436596_SNP [dm6]	C	T	5.326e^-4	0.955	EXON CR31647
3R	21385790	3R_21385790_SNP [dm3] 3R_25560068_SNP [dm6]	A	G	5.341e^-4	0.955	INTRON msi
3L	8878271	3L_8878271_SNP [dm3] 3L_8885171_SNP [dm6]	G	A	5.363e^-4	0.955	INTRON dally
2R	11156758	2R_11156758_SNP [dm3] 2R_15269253_SNP [dm6]	A	G	5.384e^-4	0.955	INTRON Trpm
2R	20021812	2R_20021812_SNP [dm3] 2R_24134289_SNP [dm6]	T	A	5.390e^-4	0.955	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
2R	20021813	2R_20021813_SNP [dm3] 2R_24134290_SNP [dm6]	C	A	5.390e^-4	0.955	UPSTREAM tamo DOWNSTREAM CG4065 INTRON Zfrp8	TF binding site BDTNP1_TFBS_dl
3L	3269116	3L_3269116_SNP [dm3] 3L_3269116_SNP [dm6]	A	G	5.410e^-4	0.955	DOWNSTREAM ckd & 1 other INTERGENIC
3L	3269122	3L_3269122_SNP [dm3] 3L_3269122_SNP [dm6]	T	C	5.410e^-4	0.955	DOWNSTREAM ckd & 1 other INTERGENIC
3L	13343644	3L_13343644_SNP [dm3] 3L_13350544_SNP [dm6]	A	G	5.418e^-4	0.955	SYNONYMOUS_CODING CG17687	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7454459	2L_7454459_DEL [dm3] 2L_7454459_DEL [dm6]	GAGTTCAACG	G	5.436e^-4	0.955	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
2L	7454477	2L_7454477_MNP [dm3] 2L_7454477_MNP [dm6]	GAC	TGA	5.436e^-4	0.955	UPSTREAM Gr28a DOWNSTREAM Gr28b INTERGENIC
3L	19230360	3L_19230360_SNP [dm3] 3L_19237260_SNP [dm6]	C	T	5.436e^-4	0.955	DOWNSTREAM CG33647 INTERGENIC
2R	15844062	2R_15844062_SNP [dm3] 2R_19956557_SNP [dm6]	C	T	5.456e^-4	0.955	INTRON CG44623
2L	4699244	2L_4699244_SNP [dm3] 2L_4699244_SNP [dm6]	C	T	5.459e^-4	0.955	INTRON CG34351
X	19449092	X_19449092_INS [dm3] X_19555059_INS [dm6]	T	TTT	5.460e^-4	0.955	INTERGENIC
2L	5421259	2L_5421259_SNP [dm3] 2L_5421259_SNP [dm6]	C	G	5.471e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z
3L	1591103	3L_1591103_SNP [dm3] 3L_1591103_SNP [dm6]	C	T	5.475e^-4	0.955	INTRON CG13917
3L	8353526	3L_8353526_SNP [dm3] 3L_8360426_SNP [dm6]	A	T	5.506e^-4	0.955	UTR_5_PRIME Idh INTRON Idh	TF binding site mE1_TFBS_Trl
2L	19424388	2L_19424388_SNP [dm3] 2L_19424388_SNP [dm6]	G	C	5.534e^-4	0.955	UTR_5_PRIME CG16771 UPSTREAM Pax INTRON Pax & 2 others	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	7998624	3L_7998624_SNP [dm3] 3L_8005524_SNP [dm6]	T	C	5.541e^-4	0.955	INTRON nmo	TF binding site BDTNP1_TFBS_dl
2L	7480938	2L_7480938_SNP [dm3] 2L_7480938_SNP [dm6]	T	G	5.542e^-4	0.955	INTRON Ziz
3R	23923437	3R_23923437_DEL [dm3] 3R_28097715_DEL [dm6]	AGTGCAGTCGAGTGGCACAG...	TGAGTGCAGTCG...	5.542e^-4	0.955	INTERGENIC
X	20013788	X_20013788_SNP [dm3] X_20119755_SNP [dm6]	A	C	5.545e^-4	0.955	INTERGENIC
3R	17199831	3R_17199831_SNP [dm3] 3R_21374109_SNP [dm6]	T	A	5.560e^-4	0.955	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	3105837	X_3105837_SNP [dm3] X_3211804_SNP [dm6]	C	G	5.564e^-4	0.955	INTRON dnc
X	11588532	X_11588532_SNP [dm3] X_11694499_SNP [dm6]	T	C	5.580e^-4	0.955	UTR_3_PRIME bif UPSTREAM PhKgamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
2R	16092476	2R_16092476_DEL [dm3] 2R_20204971_DEL [dm6]	CACTCAC	C	5.582e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	8849142	3L_8849142_SNP [dm3] 3L_8856042_SNP [dm6]	G	A	5.586e^-4	0.955	INTRON dally
3R	16326302	3R_16326302_DEL [dm3] 3R_20500580_DEL [dm6]	AA	A	5.589e^-4	0.955	INTRON Dic2
X	8619938	X_8619938_SNP [dm3] X_8725905_SNP [dm6]	C	T	5.591e^-4	0.955	DOWNSTREAM CR43297 INTERGENIC
3R	19540756	3R_19540756_SNP [dm3] 3R_23715034_SNP [dm6]	G	A	5.593e^-4	0.955	INTRON nau
X	15111747	X_15111747_SNP [dm3] X_15217714_SNP [dm6]	A	T	5.596e^-4	0.955	INTERGENIC
X	15111774	X_15111774_SNP [dm3] X_15217741_SNP [dm6]	A	T	5.596e^-4	0.955	INTERGENIC
3L	2042212	3L_2042212_SNP [dm3] 3L_2042212_SNP [dm6]	T	G	5.624e^-4	0.955	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
2R	14662687	2R_14662687_SNP [dm3] 2R_18775182_SNP [dm6]	T	C	5.660e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12615893	2R_12615893_SNP [dm3] 2R_16728388_SNP [dm6]	T	A	5.671e^-4	0.955	INTRON CG30463
3R	10824925	3R_10824925_SNP [dm3] 3R_14999203_SNP [dm6]	C	A	5.678e^-4	0.955	INTERGENIC
3R	18398151	3R_18398151_SNP [dm3] 3R_22572429_SNP [dm6]	C	T	5.702e^-4	0.955	SYNONYMOUS_CODING CG33110	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	11327245	X_11327245_SNP [dm3] X_11433212_SNP [dm6]	C	A	5.719e^-4	0.955	UTR_3_PRIME Evi5
3L	22961830	3L_22961830_SNP [dm3] 3L_22968730_SNP [dm6]	T	G	5.722e^-4	0.955	INTERGENIC
3L	19236074	3L_19236074_DEL [dm3] 3L_19242974_DEL [dm6]	ATTC	A	5.724e^-4	0.955	INTERGENIC
3L	19236079	3L_19236079_SNP [dm3] 3L_19242979_SNP [dm6]	T	A	5.724e^-4	0.955	INTERGENIC
3L	19236088	3L_19236088_DEL [dm3] 3L_19242988_DEL [dm6]	TATT	CCG	5.724e^-4	0.955	INTERGENIC
3L	19236098	3L_19236098_SNP [dm3] 3L_19242998_SNP [dm6]	T	C	5.724e^-4	0.955	INTERGENIC
2L	4482794	2L_4482794_SNP [dm3] 2L_4482794_SNP [dm6]	T	C	5.731e^-4	0.955	NON_SYNONYMOUS_CODING dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	3700584	2L_3700584_SNP [dm3] 2L_3700584_SNP [dm6]	C	A	5.732e^-4	0.955	UTR_3_PRIME CG42465 UPSTREAM Sfp24C1 & 1 other DOWNSTREAM CG42464
2R	13040495	2R_13040495_SNP [dm3] 2R_17152990_SNP [dm6]	T	C	5.745e^-4	0.955	INTERGENIC
3L	2815104	3L_2815104_SNP [dm3] 3L_2815104_SNP [dm6]	G	C	5.760e^-4	0.955	INTRON CG43444
X	6079068	X_6079068_SNP [dm3] X_6185035_SNP [dm6]	A	T	5.762e^-4	0.955	INTRON Ca-alpha1T
2L	15570954	2L_15570954_SNP [dm3] 2L_15570954_SNP [dm6]	C	T	5.762e^-4	0.955	INTRON kek3
2L	6219958	2L_6219958_SNP [dm3] 2L_6219958_SNP [dm6]	G	C	5.763e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA
2R	16092536	2R_16092536_SNP [dm3] 2R_20205031_SNP [dm6]	G	T	5.775e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4092822	2L_4092822_SNP [dm3] 2L_4092822_SNP [dm6]	A	C	5.776e^-4	0.955	INTRON ed
X	21028834	X_21028834_SNP [dm3] X_21157807_SNP [dm6]	T	C	5.783e^-4	0.955	INTERGENIC	transposable element FlyBase
3L	1725832	3L_1725832_SNP [dm3] 3L_1725832_SNP [dm6]	T	C	5.783e^-4	0.955	DOWNSTREAM CG12035 INTRON drpr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_inv
X	7286431	X_7286431_SNP [dm3] X_7392398_SNP [dm6]	C	T	5.805e^-4	0.955	INTRON CG1677 & 1 other
X	7286469	X_7286469_SNP [dm3] X_7392436_SNP [dm6]	T	A	5.805e^-4	0.955	INTRON CG1677 & 1 other
2L	4856554	2L_4856554_DEL [dm3] 2L_4856554_DEL [dm6]	GCGG	G	5.809e^-4	0.955	INTRON pog
X	7286463	X_7286463_SNP [dm3] X_7392430_SNP [dm6]	T	A	5.815e^-4	0.955	INTRON CG1677 & 1 other
3R	18458065	3R_18458065_SNP [dm3] 3R_22632343_SNP [dm6]	A	G	5.817e^-4	0.955	INTRON loco	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	14662731	2R_14662731_SNP [dm3] 2R_18775226_SNP [dm6]	C	A	5.823e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662925	2R_14662925_SNP [dm3] 2R_18775420_SNP [dm6]	T	A	5.823e^-4	0.955	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2L	11855697	2L_11855697_SNP [dm3] 2L_11855697_SNP [dm6]	T	C	5.829e^-4	0.955	INTRON Pde1c
X	2324884	X_2324884_SNP [dm3] X_2430851_SNP [dm6]	G	T	5.840e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	4642651	2R_4642651_SNP [dm3] 2R_8755146_SNP [dm6]	G	A	5.849e^-4	0.955	INTRON CG8740
2L	3064767	2L_3064767_SNP [dm3] 2L_3064767_SNP [dm6]	A	G	5.849e^-4	0.955	SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3864634	2L_3864634_SNP [dm3] 2L_3864634_SNP [dm6]	C	T	5.853e^-4	0.955	SYNONYMOUS_CODING CG3964
2R	13786227	2R_13786227_SNP [dm3] 2R_17898722_SNP [dm6]	A	T	5.863e^-4	0.955	INTRON Elk
2R	14454278	2R_14454278_SNP [dm3] 2R_18566773_SNP [dm6]	C	A	5.871e^-4	0.955	INTRON GEFmeso	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	3981727	X_3981727_SNP [dm3] X_4087694_SNP [dm6]	T	G	5.876e^-4	0.955	DOWNSTREAM CG43689 INTRON CG43689
X	12494334	X_12494334_SNP [dm3] X_12600301_SNP [dm6]	T	C	5.894e^-4	0.955	SYNONYMOUS_CODING Sec16	TF binding site BDTNP1_TFBS_dl
2L	11357157	2L_11357157_SNP [dm3] 2L_11357157_SNP [dm6]	T	G	5.901e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
2L	12736701	2L_12736701_SNP [dm3] 2L_12736701_SNP [dm6]	A	T	5.914e^-4	0.955	NON_SYNONYMOUS_CODING MRP INTRON MRP
3L	12093433	3L_12093433_SNP [dm3] 3L_12100333_SNP [dm6]	T	C	5.914e^-4	0.955	INTERGENIC
X	19357366	X_19357366_SNP [dm3] X_19463333_SNP [dm6]	A	G	5.923e^-4	0.955	INTRON kek5
3L	4424655	3L_4424655_SNP [dm3] 3L_4424655_SNP [dm6]	T	A	5.932e^-4	0.955	INTRON CG15020
X	13170863	X_13170863_SNP [dm3] X_13276830_SNP [dm6]	G	C	5.943e^-4	0.955	INTRON HDAC4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	1007471	2R_1007471_SNP [dm3] 2R_5119966_SNP [dm6]	T	C	5.961e^-4	0.955	INTRON gus
3R	20489173	3R_20489173_DEL [dm3] 3R_24663451_DEL [dm6]	TT	T	5.963e^-4	0.955	INTRON slo	regulatory region REDfly_CRMs
X	8001749	X_8001749_SNP [dm3] X_8107716_SNP [dm6]	T	A	5.964e^-4	0.955	UTR_5_PRIME Gclc INTRON Gclc
2L	7967479	2L_7967479_SNP [dm3] 2L_7967479_SNP [dm6]	A	G	5.977e^-4	0.955	INTRON Snoo
3L	9742189	3L_9742189_SNP [dm3] 3L_9749089_SNP [dm6]	A	G	5.988e^-4	0.955	INTRON CG42268	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
2R	15526539	2R_15526539_SNP [dm3] 2R_19639034_SNP [dm6]	T	C	5.998e^-4	0.955	DOWNSTREAM CG43277 INTERGENIC
X	13512792	X_13512792_SNP [dm3] X_13618759_SNP [dm6]	T	G	6.003e^-4	0.955	SYNONYMOUS_CODING Tango2 DOWNSTREAM CG2691
2R	7518068	2R_7518068_SNP [dm3] 2R_11630563_SNP [dm6]	T	A	6.017e^-4	0.955	INTRON CG9005	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	5621686	2L_5621686_SNP [dm3] 2L_5621686_SNP [dm6]	C	T	6.030e^-4	0.955	NON_SYNONYMOUS_CODING Cyp6a16	TF binding site mE1_TFBS_chinmo
2L	10266445	2L_10266445_SNP [dm3] 2L_10266445_SNP [dm6]	G	C	6.038e^-4	0.955	SYNONYMOUS_CODING Mob3 UPSTREAM CG4953
3L	3269100	3L_3269100_SNP [dm3] 3L_3269100_SNP [dm6]	A	G	6.053e^-4	0.955	DOWNSTREAM ckd & 1 other INTERGENIC
X	18494394	X_18494394_SNP [dm3] X_18600361_SNP [dm6]	C	T	6.066e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	8697140	X_8697140_SNP [dm3] X_8803107_SNP [dm6]	T	C	6.085e^-4	0.955	INTRON Lim1
3L	11625603	3L_11625603_SNP [dm3] 3L_11632503_SNP [dm6]	A	G	6.086e^-4	0.955	DOWNSTREAM CR45158 INTRON CG32091
3L	16004030	3L_16004030_SNP [dm3] 3L_16010930_SNP [dm6]	A	G	6.090e^-4	0.955	UPSTREAM mib1 INTRON mib1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13672967	2L_13672967_SNP [dm3] 2L_13672967_SNP [dm6]	T	A	6.101e^-4	0.955	UTR_3_PRIME CG18507
X	4105675	X_4105675_INS [dm3] X_4211642_INS [dm6]	T	TTCATCGAAAAATTAATTTG...	6.107e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	24918401	3R_24918401_SNP [dm3] 3R_29092679_SNP [dm6]	C	T	6.116e^-4	0.955	INTRON CG11873	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4683932	2L_4683932_SNP [dm3] 2L_4683932_SNP [dm6]	C	T	6.117e^-4	0.955	SYNONYMOUS_CODING Bsg25A INTRON CG11929	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	3927256	2R_3927256_SNP [dm3] 2R_8039751_SNP [dm6]	C	T	6.133e^-4	0.955	INTRON Optix
3R	26932008	3R_26932008_SNP [dm3] 3R_31106286_SNP [dm6]	A	G	6.162e^-4	0.955	DOWNSTREAM CG11318 INTERGENIC
2R	18370914	2R_18370914_SNP [dm3] 2R_22483409_SNP [dm6]	C	T	6.168e^-4	0.955	START_GAINED CG4554 UTR_5_PRIME CG4554 DOWNSTREAM CG4752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9720306	2L_9720306_DEL [dm3] 2L_9720306_DEL [dm6]	TCAGTTAT	T	6.178e^-4	0.955	INTRON Nckx30C
X	18493192	X_18493192_INS [dm3] X_18599159_INS [dm6]	G	GAG	6.188e^-4	0.955	INTERGENIC
X	18493199	X_18493199_SNP [dm3] X_18599166_SNP [dm6]	T	A	6.188e^-4	0.955	INTERGENIC
2L	4994605	2L_4994605_SNP [dm3] 2L_4994605_SNP [dm6]	A	C	6.197e^-4	0.955	SYNONYMOUS_CODING Rtnl1
2L	12324993	2L_12324993_SNP [dm3] 2L_12324993_SNP [dm6]	T	C	6.208e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	17199847	3R_17199847_SNP [dm3] 3R_21374125_SNP [dm6]	A	G	6.216e^-4	0.955	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	1281672	2L_1281672_SNP [dm3] 2L_1281672_SNP [dm6]	C	T	6.234e^-4	0.955	INTRON robo3
3R	12136010	3R_12136010_SNP [dm3] 3R_16310288_SNP [dm6]	C	T	6.241e^-4	0.955	DOWNSTREAM Sulf1 INTERGENIC
2L	4722850	2L_4722850_SNP [dm3] 2L_4722850_SNP [dm6]	T	A	6.247e^-4	0.955	DOWNSTREAM CG34351 INTERGENIC
3L	17997592	3L_17997592_SNP [dm3] 3L_18004492_SNP [dm6]	G	T	6.248e^-4	0.955	INTRON Eip75B	TF binding site BDTNP1_TFBS_z
3R	17202831	3R_17202831_DEL [dm3] 3R_21377109_DEL [dm6]	AC	A	6.248e^-4	0.955	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	21276630	3R_21276630_SNP [dm3] 3R_25450908_SNP [dm6]	A	C	6.248e^-4	0.955	INTRON Fur1
3R	21276690	3R_21276690_SNP [dm3] 3R_25450968_SNP [dm6]	G	T	6.248e^-4	0.955	INTRON Fur1
3R	26161147	3R_26161147_SNP [dm3] 3R_30335425_SNP [dm6]	G	A	6.268e^-4	0.955	INTRON hdc
2L	3091084	2L_3091084_SNP [dm3] 2L_3091084_SNP [dm6]	G	A	6.270e^-4	0.955	UPSTREAM toc INTRON toc
3L	1818121	3L_1818121_DEL [dm3] 3L_1818121_DEL [dm6]	AC	A	6.288e^-4	0.955	INTRON GV1
2R	16586784	2R_16586784_SNP [dm3] 2R_20699279_SNP [dm6]	T	C	6.293e^-4	0.955	INTRON dpr
X	9586322	X_9586322_SNP [dm3] X_9692289_SNP [dm6]	G	T	6.293e^-4	0.955	EXON CR44016	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10189681	3L_10189681_SNP [dm3] 3L_10196581_SNP [dm6]	A	T	6.325e^-4	0.955	INTRON ect	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10879323	2R_10879323_SNP [dm3] 2R_14991818_SNP [dm6]	C	A	6.340e^-4	0.955	DOWNSTREAM CG10265 & 1 other INTRON CG7639	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	23361105	3R_23361105_SNP [dm3] 3R_27535383_SNP [dm6]	A	G	6.357e^-4	0.955	DOWNSTREAM CR44289 INTERGENIC
3L	11850070	3L_11850070_SNP [dm3] 3L_11856970_SNP [dm6]	G	A	6.359e^-4	0.955	INTRON CG44837
X	2448020	X_2448020_SNP [dm3] X_2553987_SNP [dm6]	T	A	6.362e^-4	0.955	UPSTREAM Pdfr INTRON Pdfr	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4730683	2R_4730683_SNP [dm3] 2R_8843178_SNP [dm6]	T	A	6.371e^-4	0.955	NON_SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	4730684	2R_4730684_SNP [dm3] 2R_8843179_SNP [dm6]	C	T	6.371e^-4	0.955	SYNONYMOUS_CODING sns	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	21384771	3R_21384771_SNP [dm3] 3R_25559049_SNP [dm6]	C	G	6.374e^-4	0.955	INTRON msi
3R	21384782	3R_21384782_SNP [dm3] 3R_25559060_SNP [dm6]	C	T	6.374e^-4	0.955	INTRON msi
3L	14812590	3L_14812590_SNP [dm3] 3L_14819490_SNP [dm6]	A	T	6.375e^-4	0.955	INTRON CG17839
2L	12399182	2L_12399182_SNP [dm3] 2L_12399182_SNP [dm6]	C	T	6.376e^-4	0.955	INTRON Pkd2
3L	7097423	3L_7097423_SNP [dm3] 3L_7104323_SNP [dm6]	A	G	6.381e^-4	0.955	INTRON form3
X	21027997	X_21027997_SNP [dm3] X_21156970_SNP [dm6]	T	A	6.424e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
2R	21075633	2R_21075633_SNP [dm3] 2R_25188110_SNP [dm6]	A	G	6.429e^-4	0.955	SYNONYMOUS_CODING CG9380
2R	1010473	2R_1010473_SNP [dm3] 2R_5122968_SNP [dm6]	G	T	6.432e^-4	0.955	UPSTREAM gus INTRON gus	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	14249583	2L_14249583_SNP [dm3] 2L_14249583_SNP [dm6]	G	C	6.444e^-4	0.955	INTERGENIC
2L	14249639	2L_14249639_SNP [dm3] 2L_14249639_SNP [dm6]	A	G	6.444e^-4	0.955	INTERGENIC
2L	14249656	2L_14249656_SNP [dm3] 2L_14249656_SNP [dm6]	A	T	6.444e^-4	0.955	INTERGENIC
3R	14465636	3R_14465636_SNP [dm3] 3R_18639914_SNP [dm6]	C	T	6.444e^-4	0.955	INTRON qin & 1 other
3R	20573234	3R_20573234_SNP [dm3] 3R_24747512_SNP [dm6]	G	T	6.446e^-4	0.955	INTRON tok	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2L	15260635	2L_15260635_SNP [dm3] 2L_15260635_SNP [dm6]	T	A	6.448e^-4	0.955	DOWNSTREAM yuri INTRON yuri
3R	16326298	3R_16326298_SNP [dm3] 3R_20500576_SNP [dm6]	A	C	6.457e^-4	0.955	INTRON Dic2
2L	16664287	2L_16664287_SNP [dm3] 2L_16664287_SNP [dm6]	A	C	6.488e^-4	0.955	UTR_3_PRIME Trpgamma DOWNSTREAM Trpgamma
2R	11223810	2R_11223810_SNP [dm3] 2R_15336305_SNP [dm6]	G	A	6.503e^-4	0.955	INTRON Hr51	TF binding site BDTNP1_TFBS_twi
2L	3065798	2L_3065798_SNP [dm3] 2L_3065798_SNP [dm6]	A	C	6.525e^-4	0.955	NON_SYNONYMOUS_CODING CG3523	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	5734554	3L_5734554_SNP [dm3] 3L_5741454_SNP [dm6]	C	T	6.541e^-4	0.955	SYNONYMOUS_CODING sif INTRON sif	TF binding site mE1_TFBS_chinmo
2L	4893071	2L_4893071_SNP [dm3] 2L_4893071_SNP [dm6]	G	T	6.546e^-4	0.955	INTRON CG3036	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3L	1281675	3L_1281675_SNP [dm3] 3L_1281675_SNP [dm6]	C	A	6.549e^-4	0.955	INTRON CG32333
X	3828678	X_3828678_SNP [dm3] X_3934645_SNP [dm6]	T	A	6.555e^-4	0.955	SYNONYMOUS_CODING CG2938	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	10858528	3L_10858528_SNP [dm3] 3L_10865428_SNP [dm6]	G	A	6.581e^-4	0.955	INTRON tna	TF binding site BDTNP1_TFBS_dl
3R	21384778	3R_21384778_SNP [dm3] 3R_25559056_SNP [dm6]	G	A	6.590e^-4	0.955	INTRON msi
2L	19803221	2L_19803221_SNP [dm3] 2L_19803221_SNP [dm6]	G	A	6.593e^-4	0.955	INTRON sick
3L	8287627	3L_8287627_SNP [dm3] 3L_8294527_SNP [dm6]	A	T	6.601e^-4	0.955	INTRON CG7201
3R	22294625	3R_22294625_SNP [dm3] 3R_26468903_SNP [dm6]	T	C	6.626e^-4	0.955	SYNONYMOUS_CODING CG5455
2L	4994383	2L_4994383_SNP [dm3] 2L_4994383_SNP [dm6]	A	G	6.628e^-4	0.955	SYNONYMOUS_CODING Rtnl1
X	3932882	X_3932882_SNP [dm3] X_4038849_SNP [dm6]	A	G	6.634e^-4	0.955	INTERGENIC
2L	13329771	2L_13329771_SNP [dm3] 2L_13329771_SNP [dm6]	A	G	6.636e^-4	0.955	INTRON CG43778
3L	10897427	3L_10897427_SNP [dm3] 3L_10904327_SNP [dm6]	T	G	6.637e^-4	0.955	INTERGENIC
3L	8322931	3L_8322931_SNP [dm3] 3L_8329831_SNP [dm6]	T	C	6.640e^-4	0.955	SYNONYMOUS_CODING CG34462
3L	7820961	3L_7820961_INS [dm3] 3L_7827861_INS [dm6]	T	TT	6.686e^-4	0.955	UTR_5_PRIME Pdp1 INTRON Pdp1
2L	17168244	2L_17168244_SNP [dm3] 2L_17168244_SNP [dm6]	G	A	6.717e^-4	0.955	INTRON beat-IIIa & 1 other
2R	19645980	2R_19645980_SNP [dm3] 2R_23758457_SNP [dm6]	A	T	6.732e^-4	0.955	INTRON CG9850
2R	5219352	2R_5219352_SNP [dm3] 2R_9331847_SNP [dm6]	A	T	6.738e^-4	0.955	INTRON CG13954 & 1 other
2R	5219360	2R_5219360_SNP [dm3] 2R_9331855_SNP [dm6]	A	G	6.738e^-4	0.955	INTRON CG13954 & 1 other
X	9973343	X_9973343_SNP [dm3] X_10079310_SNP [dm6]	A	G	6.738e^-4	0.955	SYNONYMOUS_CODING ZAP3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	5492023	X_5492023_SNP [dm3] X_5597990_SNP [dm6]	C	A	6.751e^-4	0.955	INTRON Vsx1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10868868	2R_10868868_SNP [dm3] 2R_14981363_SNP [dm6]	C	G	6.759e^-4	0.955	UTR_5_PRIME pcs DOWNSTREAM ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_Trl mE1_TFBS_Ubx
2L	6469079	2L_6469079_SNP [dm3] 2L_6469079_SNP [dm6]	T	C	6.765e^-4	0.955	SYNONYMOUS_CODING mmy	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20020785	2R_20020785_SNP [dm3] 2R_24133262_SNP [dm6]	T	C	6.778e^-4	0.955	UTR_5_PRIME tamo UPSTREAM Zfrp8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
X	2698837	X_2698837_SNP [dm3] X_2804804_SNP [dm6]	G	C	6.778e^-4	0.955	INTRON kirre	TF binding site mE1_TFBS_HSA
X	2899615	X_2899615_SNP [dm3] X_3005582_SNP [dm6]	A	C	6.783e^-4	0.955	INTRON kirre
3L	15569029	3L_15569029_SNP [dm3] 3L_15575929_SNP [dm6]	C	T	6.787e^-4	0.955	UTR_3_PRIME CG6498 UPSTREAM CG16979
3R	9869468	3R_9869468_SNP [dm3] 3R_14043746_SNP [dm6]	C	A	6.801e^-4	0.955	DOWNSTREAM tRNA:S2b:88A INTERGENIC
3R	25524094	3R_25524094_SNP [dm3] 3R_29698372_SNP [dm6]	A	T	6.803e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14662494	2R_14662494_SNP [dm3] 2R_18774989_SNP [dm6]	G	C	6.813e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	15058922	2R_15058922_SNP [dm3] 2R_19171417_SNP [dm6]	A	C	6.814e^-4	0.955	INTRON CG10737
2L	12089620	2L_12089620_SNP [dm3] 2L_12089620_SNP [dm6]	G	A	6.832e^-4	0.955	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	1010456	2R_1010456_SNP [dm3] 2R_5122951_SNP [dm6]	T	G	6.846e^-4	0.955	UPSTREAM gus INTRON gus	TF binding site mE1_TFBS_HSA mE1_TFBS_zfh1
2R	1021724	2R_1021724_SNP [dm3] 2R_5134219_SNP [dm6]	A	G	6.855e^-4	0.955	INTERGENIC
2L	2323525	2L_2323525_SNP [dm3] 2L_2323525_SNP [dm6]	C	A	6.892e^-4	0.955	UTR_5_PRIME eys INTRON CG9967	TF binding site mE1_TFBS_cad
X	18966051	X_18966051_INS [dm3] X_19072018_INS [dm6]	C	CATGTGCTCCATTTAAAGCT...	6.904e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	15613860	2L_15613860_SNP [dm3] 2L_15613860_SNP [dm6]	G	A	6.906e^-4	0.955	UPSTREAM CG11864 DOWNSTREAM CG15254 INTERGENIC
2L	7459066	2L_7459066_SNP [dm3] 2L_7459066_SNP [dm6]	G	A	6.908e^-4	0.955	UPSTREAM Gr28b INTRON Gr28b
2L	755530	2L_755530_INS [dm3] 2L_755530_INS [dm6]	T	TTTAATTTATTATTT...	6.913e^-4	0.955	INTRON GABA-B-R3
X	13512828	X_13512828_SNP [dm3] X_13618795_SNP [dm6]	G	A	6.922e^-4	0.955	SYNONYMOUS_CODING Tango2 DOWNSTREAM CG2691
X	13512843	X_13512843_SNP [dm3] X_13618810_SNP [dm6]	C	T	6.922e^-4	0.955	SYNONYMOUS_CODING Tango2 DOWNSTREAM CG2691
3L	5276019	3L_5276019_SNP [dm3] 3L_5282919_SNP [dm6]	T	G	6.930e^-4	0.955	INTERGENIC
X	11588562	X_11588562_SNP [dm3] X_11694529_SNP [dm6]	T	C	6.930e^-4	0.955	UTR_3_PRIME bif UPSTREAM PhKgamma	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	7452570	2L_7452570_DEL [dm3] 2L_7452570_DEL [dm6]	TATT	T	6.938e^-4	0.955	CODON_DELETION Gr28a	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
2L	4239948	2L_4239948_SNP [dm3] 2L_4239948_SNP [dm6]	A	G	6.940e^-4	0.955	DOWNSTREAM CR45720 INTERGENIC
X	11671617	X_11671617_SNP [dm3] X_11777584_SNP [dm6]	C	T	6.955e^-4	0.955	INTRON dy
2R	15370134	2R_15370134_SNP [dm3] 2R_19482629_SNP [dm6]	T	A	6.956e^-4	0.955	DOWNSTREAM par-1 INTRON par-1
3R	1884925	3R_1884925_SNP [dm3] 3R_6059203_SNP [dm6]	C	T	6.967e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_inv
2L	12467694	2L_12467694_SNP [dm3] 2L_12467694_SNP [dm6]	A	C	6.993e^-4	0.955	INTRON bun	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn
X	12380563	X_12380563_DEL [dm3] X_12486530_DEL [dm6]	ACA	A	7.003e^-4	0.955	UPSTREAM Cpr11A INTERGENIC
2L	4682811	2L_4682811_SNP [dm3] 2L_4682811_SNP [dm6]	T	A	7.010e^-4	0.955	UTR_5_PRIME CG11929 DOWNSTREAM Bsg25A
X	12793182	X_12793182_SNP [dm3] X_12899149_SNP [dm6]	C	G	7.018e^-4	0.955	SYNONYMOUS_CODING CG32649 UPSTREAM CG32650	TF binding site mE1_TFBS_chinmo
X	4117408	X_4117408_SNP [dm3] X_4223375_SNP [dm6]	G	A	7.020e^-4	0.955	DOWNSTREAM CG15570 INTERGENIC
X	3548545	X_3548545_SNP [dm3] X_3654512_SNP [dm6]	C	A	7.023e^-4	0.955	INTRON AstA-R1
2L	11574489	2L_11574489_SNP [dm3] 2L_11574489_SNP [dm6]	G	A	7.034e^-4	0.955	INTERGENIC
2R	20022867	2R_20022867_SNP [dm3] 2R_24135344_SNP [dm6]	T	C	7.069e^-4	0.955	SYNONYMOUS_CODING CG4065 UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8
2R	20022898	2R_20022898_SNP [dm3] 2R_24135375_SNP [dm6]	T	C	7.069e^-4	0.955	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
2R	20022912	2R_20022912_SNP [dm3] 2R_24135389_SNP [dm6]	T	C	7.069e^-4	0.955	UTR_3_PRIME Zfrp8 DOWNSTREAM Zfrp8 INTRON CG4065
X	16219638	X_16219638_SNP [dm3] X_16325605_SNP [dm6]	A	C	7.074e^-4	0.955	UPSTREAM CalpC DOWNSTREAM CG32579 INTRON CG32579	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	12283163	3R_12283163_SNP [dm3] 3R_16457441_SNP [dm6]	T	A	7.086e^-4	0.955	NON_SYNONYMOUS_CODING CG14883 SPLICE_SITE_REGION CG14883 DOWNSTREAM CG42232
2L	1961694	2L_1961694_SNP [dm3] 2L_1961694_SNP [dm6]	A	C	7.107e^-4	0.955	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	10166823	3R_10166823_SNP [dm3] 3R_14341101_SNP [dm6]	C	G	7.116e^-4	0.955	INTRON NK7.1
2L	4682868	2L_4682868_SNP [dm3] 2L_4682868_SNP [dm6]	A	C	7.132e^-4	0.955	SYNONYMOUS_CODING CG11929 DOWNSTREAM Bsg25A
3L	2440435	3L_2440435_SNP [dm3] 3L_2440435_SNP [dm6]	T	C	7.133e^-4	0.955	INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco
2R	1362230	2R_1362230_SNP [dm3] 2R_5474725_SNP [dm6]	G	A	7.149e^-4	0.955	SYNONYMOUS_CODING CG30440
2R	6048888	2R_6048888_SNP [dm3] 2R_10161383_SNP [dm6]	T	G	7.170e^-4	0.955	INTRON KCNQ
2L	15500353	2L_15500353_SNP [dm3] 2L_15500353_SNP [dm6]	G	A	7.188e^-4	0.955	INTRON lace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
X	15171506	X_15171506_INS [dm3] X_15277473_INS [dm6]	G	GC	7.189e^-4	0.955	INTERGENIC
2L	16620062	2L_16620062_SNP [dm3] 2L_16620062_SNP [dm6]	C	T	7.190e^-4	0.955	INTRON CG42389
X	16740306	X_16740306_SNP [dm3] X_16846273_SNP [dm6]	T	C	7.191e^-4	0.955	SYNONYMOUS_CODING CG13003	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7318067	X_7318067_SNP [dm3] X_7424034_SNP [dm6]	T	G	7.215e^-4	0.955	DOWNSTREAM CG15036 INTERGENIC
2L	13944388	2L_13944388_SNP [dm3] 2L_13944388_SNP [dm6]	T	C	7.219e^-4	0.955	DOWNSTREAM CG16884 INTRON Ance-3
3L	276093	3L_276093_SNP [dm3] 3L_276093_SNP [dm6]	T	C	7.225e^-4	0.955	SYNONYMOUS_CODING ttm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3L	276144	3L_276144_SNP [dm3] 3L_276144_SNP [dm6]	G	A	7.225e^-4	0.955	SYNONYMOUS_CODING ttm2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
X	10865298	X_10865298_SNP [dm3] X_10971265_SNP [dm6]	T	G	7.233e^-4	0.955	INTRON CG42339
X	8340605	X_8340605_SNP [dm3] X_8446572_SNP [dm6]	G	T	7.240e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7221292	2R_7221292_SNP [dm3] 2R_11333787_SNP [dm6]	C	T	7.246e^-4	0.955	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	7221403	2R_7221403_SNP [dm3] 2R_11333898_SNP [dm6]	C	T	7.246e^-4	0.955	SYNONYMOUS_CODING sha	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	14303796	2L_14303796_SNP [dm3] 2L_14303796_SNP [dm6]	C	G	7.260e^-4	0.955	INTRON wb	TF binding site mE1_TFBS_inv
X	12493668	X_12493668_SNP [dm3] X_12599635_SNP [dm6]	G	C	7.261e^-4	0.955	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	13643747	3R_13643747_SNP [dm3] 3R_17818025_SNP [dm6]	G	A	7.261e^-4	0.955	INTRON tinc
2L	566798	2L_566798_SNP [dm3] 2L_566798_SNP [dm6]	T	C	7.261e^-4	0.955	SYNONYMOUS_CODING Nle DOWNSTREAM CG2794	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7097312	3L_7097312_SNP [dm3] 3L_7104212_SNP [dm6]	T	A	7.276e^-4	0.955	INTRON form3
2L	15326389	2L_15326389_SNP [dm3] 2L_15326389_SNP [dm6]	C	T	7.278e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2L	5063690	2L_5063690_SNP [dm3] 2L_5063690_SNP [dm6]	T	A	7.289e^-4	0.955	UPSTREAM qtc & 1 other INTRON qtc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14546225	X_14546225_SNP [dm3] X_14652192_SNP [dm6]	G	A	7.292e^-4	0.955	SYNONYMOUS_CODING NetA	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10578233	2R_10578233_SNP [dm3] 2R_14690728_SNP [dm6]	T	A	7.294e^-4	0.955	INTRON mspo
2L	3465958	2L_3465958_SNP [dm3] 2L_3465958_SNP [dm6]	C	T	7.304e^-4	0.955	UTR_5_PRIME msl-2 UPSTREAM Pdsw INTRON msl-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Ubx
2L	16688160	2L_16688160_SNP [dm3] 2L_16688160_SNP [dm6]	A	G	7.314e^-4	0.955	INTRON grp
2R	18291995	2R_18291995_SNP [dm3] 2R_22404490_SNP [dm6]	G	A	7.337e^-4	0.955	INTRON CG6044	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	4206120	2L_4206120_SNP [dm3] 2L_4206120_SNP [dm6]	A	G	7.338e^-4	0.955	SYNONYMOUS_CODING ft	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	14662621	2R_14662621_SNP [dm3] 2R_18775116_SNP [dm6]	G	A	7.345e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	14662666	2R_14662666_DEL [dm3] 2R_18775161_DEL [dm6]	TT	T	7.345e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662721	2R_14662721_SNP [dm3] 2R_18775216_SNP [dm6]	T	A	7.345e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662727	2R_14662727_SNP [dm3] 2R_18775222_SNP [dm6]	A	C	7.345e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14662733	2R_14662733_SNP [dm3] 2R_18775228_SNP [dm6]	T	A	7.345e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	14663049	2R_14663049_SNP [dm3] 2R_18775544_SNP [dm6]	C	T	7.345e^-4	0.955	DOWNSTREAM Mctp & 1 other EXON CR43964	TF binding site mE1_TFBS_bab1
3L	1189208	3L_1189208_SNP [dm3] 3L_1189208_SNP [dm6]	T	C	7.352e^-4	0.955	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
2L	13256277	2L_13256277_SNP [dm3] 2L_13256277_SNP [dm6]	C	G	7.354e^-4	0.955	SYNONYMOUS_CODING CG31728	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5483985	3L_5483985_SNP [dm3] 3L_5490885_SNP [dm6]	T	A	7.373e^-4	0.955	INTERGENIC
2R	10570737	2R_10570737_SNP [dm3] 2R_14683232_SNP [dm6]	G	C	7.375e^-4	0.955	INTRON mspo
3L	18143327	3L_18143327_SNP [dm3] 3L_18150227_SNP [dm6]	A	C	7.419e^-4	0.955	INTRON CG7330
2R	4904452	2R_4904452_SNP [dm3] 2R_9016947_SNP [dm6]	C	G	7.433e^-4	0.955	UTR_5_PRIME CG13744 UPSTREAM CG13747
3L	2231345	3L_2231345_SNP [dm3] 3L_2231345_SNP [dm6]	A	G	7.448e^-4	0.955	NON_SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2231416	3L_2231416_SNP [dm3] 3L_2231416_SNP [dm6]	C	T	7.448e^-4	0.955	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2231425	3L_2231425_SNP [dm3] 3L_2231425_SNP [dm6]	C	T	7.448e^-4	0.955	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	11856700	2L_11856700_SNP [dm3] 2L_11856700_SNP [dm6]	A	C	7.456e^-4	0.955	INTRON Pde1c
2R	9061059	2R_9061059_SNP [dm3] 2R_13173554_SNP [dm6]	C	T	7.476e^-4	0.955	SYNONYMOUS_CODING AGBE	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	21262377	X_21262377_DEL [dm3] X_21391350_DEL [dm6]	AAACAA	A	7.477e^-4	0.955	UTR_3_PRIME mst DOWNSTREAM mst
2L	5930105	2L_5930105_SNP [dm3] 2L_5930105_SNP [dm6]	A	T	7.494e^-4	0.955	INTRON dsf
3L	11843551	3L_11843551_SNP [dm3] 3L_11850451_SNP [dm6]	C	A	7.509e^-4	0.955	DOWNSTREAM CG44837 INTERGENIC
3L	11843592	3L_11843592_DEL [dm3] 3L_11850492_DEL [dm6]	TT	T	7.509e^-4	0.955	DOWNSTREAM CG44837 INTERGENIC
3L	15199407	3L_15199407_SNP [dm3] 3L_15206307_SNP [dm6]	C	T	7.512e^-4	0.955	INTERGENIC
2R	10623638	2R_10623638_SNP [dm3] 2R_14736133_SNP [dm6]	T	G	7.530e^-4	0.955	INTERGENIC
2L	11924468	2L_11924468_SNP [dm3] 2L_11924468_SNP [dm6]	G	T	7.541e^-4	0.955	INTRON Pde1c
2L	11924484	2L_11924484_SNP [dm3] 2L_11924484_SNP [dm6]	C	T	7.541e^-4	0.955	INTRON Pde1c
2L	17289377	2L_17289377_SNP [dm3] 2L_17289377_SNP [dm6]	G	T	7.551e^-4	0.955	INTERGENIC
3L	2231383	3L_2231383_SNP [dm3] 3L_2231383_SNP [dm6]	G	A	7.560e^-4	0.955	SYNONYMOUS_CODING Oseg2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	19236070	3L_19236070_SNP [dm3] 3L_19242970_SNP [dm6]	T	G	7.565e^-4	0.955	INTERGENIC
2R	7050521	2R_7050521_SNP [dm3] 2R_11163016_SNP [dm6]	T	C	7.578e^-4	0.955	INTRON shn & 1 other
2R	7677152	2R_7677152_SNP [dm3] 2R_11789647_SNP [dm6]	T	A	7.586e^-4	0.955	UPSTREAM ths & 1 other INTRON ths	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12997272	X_12997272_SNP [dm3] X_13103239_SNP [dm6]	A	G	7.596e^-4	0.955	INTRON CG43313
X	21027930	X_21027930_SNP [dm3] X_21156903_SNP [dm6]	G	T	7.605e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
2L	19679226	2L_19679226_INS [dm3] 2L_19679226_INS [dm6]	G	GAG	7.610e^-4	0.955	INTRON Lar
3L	12752451	3L_12752451_SNP [dm3] 3L_12759351_SNP [dm6]	G	A	7.612e^-4	0.955	SYNONYMOUS_CODING CG32113
3R	22802516	3R_22802516_SNP [dm3] 3R_26976794_SNP [dm6]	C	T	7.614e^-4	0.955	UTR_3_PRIME CG5521
2R	13563025	2R_13563025_SNP [dm3] 2R_17675520_SNP [dm6]	G	A	7.616e^-4	0.955	SYNONYMOUS_CODING Sema-1b	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	16017625	3R_16017625_SNP [dm3] 3R_20191903_SNP [dm6]	A	G	7.618e^-4	0.955	INTERGENIC
3R	3851103	3R_3851103_SNP [dm3] 3R_8025381_SNP [dm6]	T	C	7.634e^-4	0.955	INTRON CG2747
2L	12738105	2L_12738105_SNP [dm3] 2L_12738105_SNP [dm6]	A	G	7.635e^-4	0.955	SYNONYMOUS_CODING MRP	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	20146745	2R_20146745_SNP [dm3] 2R_24259222_SNP [dm6]	T	C	7.643e^-4	0.955	INTRON CG3376
2R	9582958	2R_9582958_SNP [dm3] 2R_13695453_SNP [dm6]	A	T	7.721e^-4	0.955	INTRON fas
3R	7892307	3R_7892307_SNP [dm3] 3R_12066585_SNP [dm6]	A	G	7.745e^-4	0.955	INTERGENIC
2R	14661591	2R_14661591_INS [dm3] 2R_18774086_INS [dm6]	A	AC	7.746e^-4	0.955	UTR_3_PRIME Mctp
3R	13595388	3R_13595388_SNP [dm3] 3R_17769666_SNP [dm6]	G	A	7.748e^-4	0.955	UTR_3_PRIME CG43102
3R	22488107	3R_22488107_SNP [dm3] 3R_26662385_SNP [dm6]	T	C	7.751e^-4	0.955	INTRON beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22488253	3R_22488253_SNP [dm3] 3R_26662531_SNP [dm6]	C	G	7.751e^-4	0.955	INTRON beat-VII	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5696531	2R_5696531_SNP [dm3] 2R_9809026_SNP [dm6]	A	G	7.765e^-4	0.955	INTERGENIC
2R	14712670	2R_14712670_DEL [dm3] 2R_18825165_DEL [dm6]	GA	G	7.780e^-4	0.955	INTRON CG15097	TF binding site mE1_TFBS_chinmo
X	12493026	X_12493026_SNP [dm3] X_12598993_SNP [dm6]	C	T	7.790e^-4	0.955	SYNONYMOUS_CODING Sec16	TF binding site mE1_TFBS_chinmo
3L	18961997	3L_18961997_SNP [dm3] 3L_18968897_SNP [dm6]	G	C	7.792e^-4	0.955	INTERGENIC
3L	18962000	3L_18962000_SNP [dm3] 3L_18968900_SNP [dm6]	A	G	7.792e^-4	0.955	INTERGENIC
3L	18962093	3L_18962093_SNP [dm3] 3L_18968993_SNP [dm6]	G	T	7.792e^-4	0.955	INTERGENIC
3R	20464835	3R_20464835_SNP [dm3] 3R_24639113_SNP [dm6]	C	T	7.795e^-4	0.955	INTRON puf
3R	6553368	3R_6553368_SNP [dm3] 3R_10727646_SNP [dm6]	T	G	7.800e^-4	0.955	INTERGENIC
3R	907227	3R_907227_SNP [dm3] 3R_5081505_SNP [dm6]	G	T	7.806e^-4	0.955	UTR_3_PRIME corto
3R	23815104	3R_23815104_SNP [dm3] 3R_27989382_SNP [dm6]	G	T	7.816e^-4	0.955	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	26201108	3R_26201108_SNP [dm3] 3R_30375386_SNP [dm6]	C	T	7.820e^-4	0.955	INTERGENIC
3L	983956	3L_983956_SNP [dm3] 3L_983956_SNP [dm6]	G	A	7.838e^-4	0.955	SYNONYMOUS_CODING Glut1
2L	2736518	2L_2736518_SNP [dm3] 2L_2736518_SNP [dm6]	A	G	7.864e^-4	0.955	INTRON CG31689
2R	16020982	2R_16020982_SNP [dm3] 2R_20133477_SNP [dm6]	A	C	7.874e^-4	0.955	INTERGENIC
2L	1088771	2L_1088771_SNP [dm3] 2L_1088771_SNP [dm6]	G	A	7.885e^-4	0.955	INTRON CG4629
3R	17349249	3R_17349249_SNP [dm3] 3R_21523527_SNP [dm6]	C	T	7.885e^-4	0.955	INTRON CG7956
3L	12430488	3L_12430488_SNP [dm3] 3L_12437388_SNP [dm6]	T	A	7.889e^-4	0.955	INTERGENIC
3L	12430492	3L_12430492_SNP [dm3] 3L_12437392_SNP [dm6]	C	T	7.889e^-4	0.955	INTERGENIC
3L	12430501	3L_12430501_SNP [dm3] 3L_12437401_SNP [dm6]	T	C	7.889e^-4	0.955	INTERGENIC
2R	6405471	2R_6405471_SNP [dm3] 2R_10517966_SNP [dm6]	C	T	7.900e^-4	0.955	NON_SYNONYMOUS_CODING lola DOWNSTREAM lola INTRON lola
2R	7015597	2R_7015597_SNP [dm3] 2R_11128092_SNP [dm6]	C	A	7.934e^-4	0.955	INTERGENIC
3L	11845750	3L_11845750_SNP [dm3] 3L_11852650_SNP [dm6]	G	A	7.937e^-4	0.955	INTRON CG44837	TF binding site mE1_TFBS_chinmo
2L	13896565	2L_13896565_SNP [dm3] 2L_13896565_SNP [dm6]	C	G	7.970e^-4	0.955	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	844185	2L_844185_SNP [dm3] 2L_844185_SNP [dm6]	T	A	7.970e^-4	0.955	INTRON drongo
2R	4645798	2R_4645798_SNP [dm3] 2R_8758293_SNP [dm6]	G	A	7.970e^-4	0.955	INTRON CG8740	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	755502	3L_755502_DEL [dm3] 3L_755502_DEL [dm6]	GTAAACG	G	7.970e^-4	0.955	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25524209	3R_25524209_SNP [dm3] 3R_29698487_SNP [dm6]	A	C	7.970e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
X	12163275	X_12163275_SNP [dm3] X_12269242_SNP [dm6]	T	G	7.970e^-4	0.955	INTRON Ten-a
X	12163287	X_12163287_SNP [dm3] X_12269254_SNP [dm6]	C	A	7.970e^-4	0.955	INTRON Ten-a
X	12163299	X_12163299_SNP [dm3] X_12269266_SNP [dm6]	C	T	7.970e^-4	0.955	INTRON Ten-a
X	12163990	X_12163990_SNP [dm3] X_12269957_SNP [dm6]	G	A	7.970e^-4	0.955	INTRON Ten-a
X	5198425	X_5198425_SNP [dm3] X_5304392_SNP [dm6]	C	T	7.970e^-4	0.955	SYNONYMOUS_CODING CG3323 INTRON CG42749
X	6423626	X_6423626_SNP [dm3] X_6529593_SNP [dm6]	T	C	7.970e^-4	0.955	SYNONYMOUS_CODING Spat
3L	8802442	3L_8802442_SNP [dm3] 3L_8809342_SNP [dm6]	G	C	7.990e^-4	0.955	DOWNSTREAM CG32024 & 1 other INTERGENIC
2R	7571253	2R_7571253_SNP [dm3] 2R_11683748_SNP [dm6]	G	A	8.013e^-4	0.955	DOWNSTREAM CG13196 INTRON Buffy
3R	19570625	3R_19570625_SNP [dm3] 3R_23744903_SNP [dm6]	A	C	8.017e^-4	0.955	INTRON Hmgcr
X	2306198	X_2306198_SNP [dm3] X_2412165_SNP [dm6]	T	C	8.017e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_sens
2L	1990568	2L_1990568_SNP [dm3] 2L_1990568_SNP [dm6]	C	T	8.025e^-4	0.955	DOWNSTREAM Obp22a EXON CR42874
2R	6973019	2R_6973019_SNP [dm3] 2R_11085514_SNP [dm6]	T	C	8.025e^-4	0.955	UPSTREAM CG43188 DOWNSTREAM CG43189 INTRON luna	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	4385481	2L_4385481_SNP [dm3] 2L_4385481_SNP [dm6]	G	T	8.046e^-4	0.955	SYNONYMOUS_CODING CG3338 DOWNSTREAM Psf2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	14440082	3R_14440082_SNP [dm3] 3R_18614360_SNP [dm6]	T	A	8.047e^-4	0.955	INTRON qin & 1 other
3R	14440093	3R_14440093_INS [dm3] 3R_18614371_INS [dm6]	GC	CGATTTCCA	8.047e^-4	0.955	INTRON qin & 1 other
3L	755521	3L_755521_SNP [dm3] 3L_755521_SNP [dm6]	G	A	8.058e^-4	0.955	UPSTREAM hng3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	18443163	2L_18443163_SNP [dm3] 2L_18443163_SNP [dm6]	A	G	8.069e^-4	0.955	UTR_5_PRIME RpS26	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_run
3R	10178955	3R_10178955_SNP [dm3] 3R_14353233_SNP [dm6]	A	C	8.079e^-4	0.955	INTRON NK7.1
2R	17990586	2R_17990586_SNP [dm3] 2R_22103081_SNP [dm6]	C	T	8.082e^-4	0.955	UPSTREAM CG6613 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	14662742	2R_14662742_SNP [dm3] 2R_18775237_SNP [dm6]	A	C	8.093e^-4	0.955	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	12378510	X_12378510_SNP [dm3] X_12484477_SNP [dm6]	C	G	8.095e^-4	0.955	INTERGENIC
3R	26069651	3R_26069651_SNP [dm3] 3R_30243929_SNP [dm6]	A	G	8.102e^-4	0.955	UPSTREAM CG9737 DOWNSTREAM CG9733 INTERGENIC
2R	19392614	2R_19392614_SNP [dm3] 2R_23505091_SNP [dm6]	C	A	8.105e^-4	0.955	INTERGENIC
X	15089998	X_15089998_SNP [dm3] X_15195965_SNP [dm6]	G	A	8.122e^-4	0.955	INTERGENIC
3R	14465614	3R_14465614_SNP [dm3] 3R_18639892_SNP [dm6]	A	G	8.123e^-4	0.955	INTRON qin & 1 other
3R	14465621	3R_14465621_SNP [dm3] 3R_18639899_SNP [dm6]	G	A	8.123e^-4	0.955	INTRON qin & 1 other
3L	1282832	3L_1282832_SNP [dm3] 3L_1282832_SNP [dm6]	G	A	8.128e^-4	0.955	INTRON CG32333
2R	6259716	2R_6259716_SNP [dm3] 2R_10372211_SNP [dm6]	G	A	8.130e^-4	0.955	INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	6259727	2R_6259727_SNP [dm3] 2R_10372222_SNP [dm6]	A	T	8.130e^-4	0.955	INTRON CG42732	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	7284130	3L_7284130_SNP [dm3] 3L_7291030_SNP [dm6]	A	C	8.132e^-4	0.955	INTRON unc-13-4A
3R	15025894	3R_15025894_SNP [dm3] 3R_19200172_SNP [dm6]	C	T	8.135e^-4	0.955	SYNONYMOUS_CODING CG31475
3R	12236497	3R_12236497_INS [dm3] 3R_16410775_INS [dm6]	C	CC	8.138e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	1250247	3R_1250247_SNP [dm3] 3R_5424525_SNP [dm6]	C	A	8.148e^-4	0.955	DOWNSTREAM CG12147 INTRON CG14669
3R	22989599	3R_22989599_SNP [dm3] 3R_27163877_SNP [dm6]	T	C	8.149e^-4	0.955	SYNONYMOUS_CODING ppk31 DOWNSTREAM CG5909 & 1 other
2R	10349395	2R_10349395_SNP [dm3] 2R_14461890_SNP [dm6]	G	C	8.150e^-4	0.955	INTRON Oaz	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23733707	3R_23733707_SNP [dm3] 3R_27907985_SNP [dm6]	G	A	8.164e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	7809016	3L_7809016_SNP [dm3] 3L_7815916_SNP [dm6]	G	T	8.167e^-4	0.955	UTR_3_PRIME Pdp1
3R	23738139	3R_23738139_SNP [dm3] 3R_27912417_SNP [dm6]	G	T	8.167e^-4	0.955	UPSTREAM hanabi INTERGENIC
2R	20024364	2R_20024364_SNP [dm3] 2R_24136841_SNP [dm6]	G	T	8.173e^-4	0.955	SYNONYMOUS_CODING CG4065	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8498696	2L_8498696_SNP [dm3] 2L_8498696_SNP [dm6]	G	C	8.175e^-4	0.955	INTRON Dh31
3L	4375129	3L_4375129_SNP [dm3] 3L_4375129_SNP [dm6]	C	G	8.187e^-4	0.955	INTRON DopEcR
2L	19803809	2L_19803809_SNP [dm3] 2L_19803809_SNP [dm6]	C	T	8.206e^-4	0.955	INTRON sick
2R	15370129	2R_15370129_SNP [dm3] 2R_19482624_SNP [dm6]	A	G	8.212e^-4	0.955	DOWNSTREAM par-1 INTRON par-1
3L	11595413	3L_11595413_SNP [dm3] 3L_11602313_SNP [dm6]	T	C	8.215e^-4	0.955	INTRON CG7368	TF binding site mE1_TFBS_inv
2R	6405346	2R_6405346_SNP [dm3] 2R_10517841_SNP [dm6]	T	A	8.231e^-4	0.955	DOWNSTREAM lola INTRON lola
3L	2043146	3L_2043146_SNP [dm3] 3L_2043146_SNP [dm6]	C	A	8.250e^-4	0.955	INTRON sls	TF binding site mE1_TFBS_cad
2L	4805236	2L_4805236_SNP [dm3] 2L_4805236_SNP [dm6]	G	A	8.259e^-4	0.955	INTERGENIC
2L	7482819	2L_7482819_SNP [dm3] 2L_7482819_SNP [dm6]	T	A	8.268e^-4	0.955	SYNONYMOUS_CODING Ziz
3L	17413406	3L_17413406_SNP [dm3] 3L_17420306_SNP [dm6]	C	T	8.277e^-4	0.955	INTRON blot
X	11589107	X_11589107_SNP [dm3] X_11695074_SNP [dm6]	T	G	8.278e^-4	0.955	UPSTREAM PhKgamma DOWNSTREAM bif INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	3922363	3L_3922363_INS [dm3] 3L_3922363_INS [dm6]	T	TT	8.282e^-4	0.955	INTRON Eip63F-1
2R	19179161	2R_19179161_SNP [dm3] 2R_23291638_SNP [dm6]	T	G	8.316e^-4	0.955	UPSTREAM CR44783 INTERGENIC
2L	2515924	2L_2515924_SNP [dm3] 2L_2515924_SNP [dm6]	A	G	8.321e^-4	0.955	INTERGENIC
X	21027374	X_21027374_SNP [dm3] X_21156347_SNP [dm6]	A	C	8.327e^-4	0.955	UPSTREAM CR45499 EXON CR32511
X	21027894	X_21027894_DEL [dm3] X_21156867_DEL [dm6]	AGCCCATGTGATGGAATGCA...	A	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027934	X_21027934_DEL [dm3] X_21156907_DEL [dm6]	ATAAGTGGC	A	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027945	X_21027945_DEL [dm3] X_21156918_DEL [dm6]	GCC	G	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027951	X_21027951_DEL [dm3] X_21156924_DEL [dm6]	TACTTTTGC	T	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027964	X_21027964_DEL [dm3] X_21156937_DEL [dm6]	CG	C	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027969	X_21027969_DEL [dm3] X_21156942_DEL [dm6]	GCACAGCAGTATTGTCTGCG...	G	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21027999	X_21027999_DEL [dm3] X_21156972_DEL [dm6]	TTCCCAAG	T	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028008	X_21028008_SNP [dm3] X_21156981_SNP [dm6]	T	G	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028012	X_21028012_SNP [dm3] X_21156985_SNP [dm6]	G	T	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028014	X_21028014_SNP [dm3] X_21156987_SNP [dm6]	A	T	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028017	X_21028017_DEL [dm3] X_21156990_DEL [dm6]	ATACAATAGCTGTTGCTCCT...	A	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028045	X_21028045_DEL [dm3] X_21157018_DEL [dm6]	CAGGGATGCCAACAGAGGAG...	C	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC	transposable element FlyBase
X	21028158	X_21028158_DEL [dm3] X_21157131_DEL [dm6]	AAAAATCAAA	A	8.327e^-4	0.955	UPSTREAM CR45499 & 1 other INTERGENIC
X	21028375	X_21028375_SNP [dm3] X_21157348_SNP [dm6]	G	T	8.327e^-4	0.955	UPSTREAM CR32511 INTERGENIC
X	21028591	X_21028591_SNP [dm3] X_21157564_SNP [dm6]	A	G	8.327e^-4	0.955	UPSTREAM CR32511 INTERGENIC	transposable element FlyBase
2L	4093170	2L_4093170_SNP [dm3] 2L_4093170_SNP [dm6]	T	A	8.334e^-4	0.955	INTRON ed
3R	13969188	3R_13969188_SNP [dm3] 3R_18143466_SNP [dm6]	T	G	8.335e^-4	0.955	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23361466	3R_23361466_DEL [dm3] 3R_27535744_DEL [dm6]	TT	T	8.336e^-4	0.955	DOWNSTREAM CR44289 INTERGENIC
2L	12120314	2L_12120314_SNP [dm3] 2L_12120314_SNP [dm6]	G	T	8.341e^-4	0.955	INTRON CG17211
3R	26815309	3R_26815309_SNP [dm3] 3R_30989587_SNP [dm6]	G	A	8.355e^-4	0.955	SYNONYMOUS_CODING CG31008 INTRON 5-HT7
3R	20449891	3R_20449891_DEL [dm3] 3R_24624169_DEL [dm6]	AGGGAAA	A	8.377e^-4	0.955	DOWNSTREAM mld INTRON Syx18
2L	1469148	2L_1469148_SNP [dm3] 2L_1469148_SNP [dm6]	C	T	8.386e^-4	0.955	INTERGENIC
2R	19905639	2R_19905639_INS [dm3] 2R_24018116_INS [dm6]	A	ATA	8.387e^-4	0.955	UPSTREAM CG4324 INTRON CG3121	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	6670662	2R_6670662_DEL [dm3] 2R_10783157_DEL [dm6]	TCAAAATGTCT...	T	8.388e^-4	0.955	UPSTREAM CG33144 INTRON CG33144 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	10428679	2L_10428679_SNP [dm3] 2L_10428679_SNP [dm6]	T	A	8.407e^-4	0.955	UPSTREAM CG5188 DOWNSTREAM KdelR INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	15788925	3R_15788925_SNP [dm3] 3R_19963203_SNP [dm6]	C	T	8.416e^-4	0.955	INTRON Hs6st
3L	1613300	3L_1613300_SNP [dm3] 3L_1613300_SNP [dm6]	T	G	8.418e^-4	0.955	NON_SYNONYMOUS_CODING CG12105 INTRON CG33791 & 1 other	TF binding site mE1_TFBS_cad
2R	16416899	2R_16416899_SNP [dm3] 2R_20529394_SNP [dm6]	C	A	8.429e^-4	0.955	NON_SYNONYMOUS_CODING CG30151
3R	17514221	3R_17514221_SNP [dm3] 3R_21688499_SNP [dm6]	A	T	8.430e^-4	0.955	INTRON CG31176
2L	15500992	2L_15500992_SNP [dm3] 2L_15500992_SNP [dm6]	T	A	8.433e^-4	0.955	INTRON lace
3L	11849945	3L_11849945_SNP [dm3] 3L_11856845_SNP [dm6]	G	C	8.439e^-4	0.955	INTRON CG44837
2R	8658369	2R_8658369_SNP [dm3] 2R_12770864_SNP [dm6]	G	C	8.445e^-4	0.955	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	16667378	2L_16667378_SNP [dm3] 2L_16667378_SNP [dm6]	A	G	8.453e^-4	0.955	INTRON Trpgamma
X	13411293	X_13411293_SNP [dm3] X_13517260_SNP [dm6]	T	C	8.464e^-4	0.955	INTRON Neto
2L	15574192	2L_15574192_SNP [dm3] 2L_15574192_SNP [dm6]	A	G	8.475e^-4	0.955	INTRON kek3
3R	17243457	3R_17243457_SNP [dm3] 3R_21417735_SNP [dm6]	A	T	8.491e^-4	0.955	INTRON lbl	TF binding site mE1_TFBS_cad
X	8718838	X_8718838_SNP [dm3] X_8824805_SNP [dm6]	A	T	8.501e^-4	0.955	INTERGENIC

By genomic position
Variant impact
Gene name

mn_PhototaxDark_wk1 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results