DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=5.625e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1867 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	14348555	2R_14348555_SNP [dm3] 2R_18461050_SNP [dm6]	C	T	1.177e^-6	0.961	SYNONYMOUS_CODING CG30116	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7834116	2R_7834116_SNP [dm3] 2R_11946611_SNP [dm6]	T	G	3.421e^-6	0.961	INTRON CG13188
2L	2225276	2L_2225276_DEL [dm3] 2L_2225276_DEL [dm6]	GTTTATAAGATG...	G	3.738e^-6	0.961	UTR_3_PRIME papi DOWNSTREAM CG15387
3L	20353297	3L_20353297_SNP [dm3] 3L_20360197_SNP [dm6]	G	A	3.762e^-6	0.961	SYNONYMOUS_CODING DNApol-alpha60 DOWNSTREAM CG5665	TF binding site mE1_TFBS_chinmo
2R	16872955	2R_16872955_SNP [dm3] 2R_20985450_SNP [dm6]	C	T	4.937e^-6	0.961	INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	4442237	2L_4442237_DEL [dm3] 2L_4442237_DEL [dm6]	ATTTATATTAGAGGTTTTTA...	A	5.377e^-6	0.961	UPSTREAM CG15431 & 2 others DOWNSTREAM morgue INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_h mE1_TFBS_HSA
3L	14499583	3L_14499583_SNP [dm3] 3L_14506483_SNP [dm6]	C	T	5.456e^-6	0.961	INTRON bbg
3L	15226927	3L_15226927_SNP [dm3] 3L_15233827_SNP [dm6]	T	C	6.124e^-6	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Trl
2L	19967418	2L_19967418_SNP [dm3] 2L_19967418_SNP [dm6]	C	T	6.702e^-6	0.961	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2268705	3L_2268705_SNP [dm3] 3L_2268705_SNP [dm6]	A	G	6.878e^-6	0.961	UPSTREAM CG32302 DOWNSTREAM obst-I INTERGENIC
2R	19390720	2R_19390720_SNP [dm3] 2R_23503197_SNP [dm6]	C	G	6.997e^-6	0.961	UTR_5_PRIME CG13559
2L	19903033	2L_19903033_DEL [dm3] 2L_19903033_DEL [dm6]	GCGGAG	G	7.117e^-6	0.961	INTRON sick	TF binding site BDTNP1_TFBS_da
3L	17479828	3L_17479828_DEL [dm3] 3L_17486728_DEL [dm6]	TA	T	7.987e^-6	0.961	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	5725438	3L_5725438_INS [dm3] 3L_5732338_INS [dm6]	C	AA	8.093e^-6	0.961	INTRON sif
3R	10227577	3R_10227577_INS [dm3] 3R_14401855_INS [dm6]	A	AT	8.330e^-6	0.961	INTRON cv-c
2L	8308494	2L_8308494_SNP [dm3] 2L_8308494_SNP [dm6]	A	G	9.797e^-6	0.961	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	13413387	3L_13413387_SNP [dm3] 3L_13420287_SNP [dm6]	A	G	9.898e^-6	0.961	INTRON CG32121
3L	2579175	3L_2579175_SNP [dm3] 3L_2579175_SNP [dm6]	C	T	1.041e^-5	0.961	INTRON msn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13412906	3L_13412906_SNP [dm3] 3L_13419806_SNP [dm6]	G	A	1.087e^-5	0.961	INTRON CG32121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	8996432	3L_8996432_SNP [dm3] 3L_9003332_SNP [dm6]	C	T	1.164e^-5	0.961	DOWNSTREAM CG5087 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	19327591	3L_19327591_DEL [dm3] 3L_19334491_DEL [dm6]	TAACCCTACAGCTATAAAT...	T	1.200e^-5	0.961	INTRON pip
4	530275	4_530275_SNP [dm3] 4_509649_SNP [dm6]	C	G	1.251e^-5	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13412807	3L_13412807_SNP [dm3] 3L_13419707_SNP [dm6]	C	A	1.375e^-5	0.961	INTRON CG32121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15221866	3L_15221866_SNP [dm3] 3L_15228766_SNP [dm6]	A	T	1.461e^-5	0.961	INTERGENIC
3R	19421466	3R_19421466_SNP [dm3] 3R_23595744_SNP [dm6]	T	G	1.571e^-5	0.961	NON_SYNONYMOUS_CODING CG16723 DOWNSTREAM CG10183
3L	15221688	3L_15221688_SNP [dm3] 3L_15228588_SNP [dm6]	G	T	1.622e^-5	0.961	INTERGENIC
3L	15222764	3L_15222764_SNP [dm3] 3L_15229664_SNP [dm6]	A	G	1.622e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z
2L	19999409	2L_19999409_SNP [dm3] 2L_19999409_SNP [dm6]	T	C	1.656e^-5	0.961	DOWNSTREAM CR44908 INTRON CG43861
3L	15763127	3L_15763127_SNP [dm3] 3L_15770027_SNP [dm6]	G	T	1.707e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4249931	X_4249931_SNP [dm3] X_4355898_SNP [dm6]	T	C	1.760e^-5	0.961	INTRON norpA
2L	12103955	2L_12103955_SNP [dm3] 2L_12103955_SNP [dm6]	T	C	1.784e^-5	0.961	NON_SYNONYMOUS_CODING Aats-thr UPSTREAM Aats-thr & 1 other INTRON Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
4	530954	4_530954_SNP [dm3] 4_510328_SNP [dm6]	C	T	1.961e^-5	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15223574	3L_15223574_SNP [dm3] 3L_15230474_SNP [dm6]	C	T	2.019e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_z mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	19420887	3R_19420887_SNP [dm3] 3R_23595165_SNP [dm6]	C	G	2.040e^-5	0.961	NON_SYNONYMOUS_CODING CG16723
3L	11220268	3L_11220268_INS [dm3] 3L_11227168_INS [dm6]	A	AATA	2.138e^-5	0.961	INTRON CG42671
3R	19420476	3R_19420476_SNP [dm3] 3R_23594754_SNP [dm6]	A	G	2.158e^-5	0.961	INTRON CG16723
2R	9757541	2R_9757541_SNP [dm3] 2R_13870036_SNP [dm6]	T	A	2.168e^-5	0.961	SPLICE_SITE_REGION shot INTRON shot
2R	10367771	2R_10367771_SNP [dm3] 2R_14480266_SNP [dm6]	C	G	2.228e^-5	0.961	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7834111	2R_7834111_SNP [dm3] 2R_11946606_SNP [dm6]	C	A	2.306e^-5	0.961	INTRON CG13188
3L	11219997	3L_11219997_SNP [dm3] 3L_11226897_SNP [dm6]	A	G	2.398e^-5	0.961	INTRON CG42671	TF binding site mE1_TFBS_cad
3L	1196705	3L_1196705_SNP [dm3] 3L_1196705_SNP [dm6]	G	T	2.403e^-5	0.961	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	4249363	X_4249363_INS [dm3] X_4355330_INS [dm6]	T	TTT	2.404e^-5	0.961	INTRON norpA	TF binding site mE1_TFBS_HSA
3R	6838396	3R_6838396_SNP [dm3] 3R_11012674_SNP [dm6]	A	T	2.440e^-5	0.961	INTRON CG34114
3R	3066798	3R_3066798_SNP [dm3] 3R_7241076_SNP [dm6]	G	C	2.479e^-5	0.961	UTR_3_PRIME CG14608 UPSTREAM CG14607
3L	10424405	3L_10424405_SNP [dm3] 3L_10431305_SNP [dm6]	T	C	2.547e^-5	0.961	NON_SYNONYMOUS_CODING Ir67b
3L	10424478	3L_10424478_SNP [dm3] 3L_10431378_SNP [dm6]	T	A	2.712e^-5	0.961	NON_SYNONYMOUS_CODING Ir67b
3L	1196693	3L_1196693_SNP [dm3] 3L_1196693_SNP [dm6]	C	G	2.732e^-5	0.961	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10399394	2R_10399394_DEL [dm3] 2R_14511889_DEL [dm6]	GAGG	G	2.763e^-5	0.961	UTR_3_PRIME Asx DOWNSTREAM Cpr51A
2L	20366085	2L_20366085_SNP [dm3] 2L_20366085_SNP [dm6]	G	C	2.770e^-5	0.961	DOWNSTREAM RtGEF INTERGENIC
3R	24104281	3R_24104281_SNP [dm3] 3R_28278559_SNP [dm6]	T	C	3.040e^-5	0.961	INTERGENIC
3R	24104290	3R_24104290_SNP [dm3] 3R_28278568_SNP [dm6]	T	C	3.040e^-5	0.961	INTERGENIC
2R	10425698	2R_10425698_INS [dm3] 2R_14538193_INS [dm6]	A	AA	3.041e^-5	0.961	INTRON ttv
3R	5863265	3R_5863265_SNP [dm3] 3R_10037543_SNP [dm6]	A	G	3.080e^-5	0.961	INTRON Mical
3L	20352851	3L_20352851_SNP [dm3] 3L_20359751_SNP [dm6]	C	T	3.151e^-5	0.961	SYNONYMOUS_CODING CG5665 DOWNSTREAM DNApol-alpha60
2R	15745293	2R_15745293_SNP [dm3] 2R_19857788_SNP [dm6]	C	A	3.301e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	14043327	2L_14043327_SNP [dm3] 2L_14043327_SNP [dm6]	T	C	3.407e^-5	0.961	INTRON nAChRalpha5	TF binding site BDTNP1_TFBS_dl
3R	19305915	3R_19305915_SNP [dm3] 3R_23480193_SNP [dm6]	T	A	3.422e^-5	0.961	INTERGENIC
2L	8308509	2L_8308509_SNP [dm3] 2L_8308509_SNP [dm6]	A	G	3.463e^-5	0.961	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
X	20801517	X_20801517_SNP [dm3] X_20930490_SNP [dm6]	G	A	3.500e^-5	0.961	DOWNSTREAM CG11227 INTERGENIC
3L	3386620	3L_3386620_INS [dm3] 3L_3386620_INS [dm6]	A	AA	3.534e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5863041	3R_5863041_SNP [dm3] 3R_10037319_SNP [dm6]	T	A	3.815e^-5	0.961	INTRON Mical
2R	14596642	2R_14596642_SNP [dm3] 2R_18709137_SNP [dm6]	G	A	4.005e^-5	0.961	DOWNSTREAM CG15073 INTRON CG15087	TF binding site mE1_TFBS_sens
2R	14596650	2R_14596650_SNP [dm3] 2R_18709145_SNP [dm6]	A	C	4.005e^-5	0.961	DOWNSTREAM CG15073 INTRON CG15087	TF binding site mE1_TFBS_sens
X	13438160	X_13438160_SNP [dm3] X_13544127_SNP [dm6]	A	G	4.040e^-5	0.961	INTRON Cpr12A
2R	11038077	2R_11038077_SNP [dm3] 2R_15150572_SNP [dm6]	C	G	4.073e^-5	0.961	DOWNSTREAM CG7544 INTERGENIC
4	456128	4_456128_SNP [dm3] 4_435502_SNP [dm6]	A	G	4.078e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	16343314	2L_16343314_SNP [dm3] 2L_16343314_SNP [dm6]	G	A	4.103e^-5	0.961	UPSTREAM CG44405 DOWNSTREAM chif INTRON chif & 1 other
2L	16343336	2L_16343336_SNP [dm3] 2L_16343336_SNP [dm6]	A	G	4.103e^-5	0.961	DOWNSTREAM chif INTRON chif & 1 other
2R	15745300	2R_15745300_SNP [dm3] 2R_19857795_SNP [dm6]	G	A	4.198e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11219949	3L_11219949_SNP [dm3] 3L_11226849_SNP [dm6]	T	C	4.199e^-5	0.961	INTRON CG42671	TF binding site mE1_TFBS_cad
2L	8082147	2L_8082147_SNP [dm3] 2L_8082147_SNP [dm6]	C	T	4.211e^-5	0.961	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	5869038	3R_5869038_SNP [dm3] 3R_10043316_SNP [dm6]	C	T	4.241e^-5	0.961	UTR_5_PRIME CG3909 UPSTREAM Mical	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	17102403	X_17102403_SNP [dm3] X_17208370_SNP [dm6]	A	G	4.254e^-5	0.961	UPSTREAM CG32563 DOWNSTREAM CG32564 & 1 other INTERGENIC
X	17102414	X_17102414_SNP [dm3] X_17208381_SNP [dm6]	C	T	4.254e^-5	0.961	UPSTREAM CG32563 DOWNSTREAM CG32564 & 1 other INTERGENIC
X	17102427	X_17102427_SNP [dm3] X_17208394_SNP [dm6]	A	G	4.254e^-5	0.961	UPSTREAM CG32563 DOWNSTREAM CG32564 & 1 other INTERGENIC
3L	15224867	3L_15224867_SNP [dm3] 3L_15231767_SNP [dm6]	C	T	4.282e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	5345379	X_5345379_SNP [dm3] X_5451346_SNP [dm6]	A	G	4.315e^-5	0.961	INTRON SPR
4	486432	4_486432_SNP [dm3] 4_465806_SNP [dm6]	C	A	4.365e^-5	0.961	INTRON bip2
2R	14596572	2R_14596572_SNP [dm3] 2R_18709067_SNP [dm6]	C	T	4.391e^-5	0.961	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
2L	8082110	2L_8082110_SNP [dm3] 2L_8082110_SNP [dm6]	T	C	4.489e^-5	0.961	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082112	2L_8082112_SNP [dm3] 2L_8082112_SNP [dm6]	G	A	4.489e^-5	0.961	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	3158979	X_3158979_SNP [dm3] X_3264946_SNP [dm6]	C	T	4.515e^-5	0.961	INTRON dnc
2L	20332007	2L_20332007_SNP [dm3] 2L_20332007_SNP [dm6]	T	G	4.550e^-5	0.961	INTRON spir
3L	10424033	3L_10424033_SNP [dm3] 3L_10430933_SNP [dm6]	A	G	4.565e^-5	0.961	SYNONYMOUS_CODING Ir67b
3L	19659424	3L_19659424_SNP [dm3] 3L_19666324_SNP [dm6]	A	T	4.579e^-5	0.961	INTERGENIC
2L	19993995	2L_19993995_SNP [dm3] 2L_19993995_SNP [dm6]	A	G	4.580e^-5	0.961	INTRON CG43861	TF binding site mE1_TFBS_chinmo
X	757741	X_757741_INS [dm3] X_863708_INS [dm6]	A	ATTCGGGCGGGA...	4.679e^-5	0.961	DOWNSTREAM CG14634 INTRON CG43867
3L	7701377	3L_7701377_SNP [dm3] 3L_7708277_SNP [dm6]	G	T	4.701e^-5	0.961	SYNONYMOUS_CODING Ank2 DOWNSTREAM Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
3L	7701392	3L_7701392_SNP [dm3] 3L_7708292_SNP [dm6]	G	A	4.701e^-5	0.961	SYNONYMOUS_CODING Ank2 DOWNSTREAM Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
2R	10373190	2R_10373190_SNP [dm3] 2R_14485685_SNP [dm6]	T	A	4.933e^-5	0.961	INTRON L	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12962343	X_12962343_SNP [dm3] X_13068310_SNP [dm6]	T	A	4.986e^-5	0.961	INTRON rad
3L	12260675	3L_12260675_SNP [dm3] 3L_12267575_SNP [dm6]	T	C	5.202e^-5	0.961	UTR_5_PRIME CG32100 UPSTREAM app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad
3L	20502060	3L_20502060_SNP [dm3] 3L_20508960_SNP [dm6]	C	G	5.209e^-5	0.961	UPSTREAM CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14596658	2R_14596658_SNP [dm3] 2R_18709153_SNP [dm6]	T	A	5.288e^-5	0.961	DOWNSTREAM CG15073 INTRON CG15087	TF binding site mE1_TFBS_sens
3L	17480006	3L_17480006_SNP [dm3] 3L_17486906_SNP [dm6]	C	G	5.362e^-5	0.961	UPSTREAM Oatp74D & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	388673	2L_388673_SNP [dm3] 2L_388673_SNP [dm6]	T	G	5.543e^-5	0.961	INTERGENIC
2L	9951692	2L_9951692_SNP [dm3] 2L_9951692_SNP [dm6]	G	A	5.656e^-5	0.961	DOWNSTREAM CG13126 INTERGENIC
2L	8769505	2L_8769505_SNP [dm3] 2L_8769505_SNP [dm6]	C	T	5.725e^-5	0.961	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
X	20838888	X_20838888_SNP [dm3] X_20967861_SNP [dm6]	T	A	5.744e^-5	0.961	INTERGENIC
2R	14596681	2R_14596681_SNP [dm3] 2R_18709176_SNP [dm6]	G	A	5.780e^-5	0.961	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073	TF binding site mE1_TFBS_sens
X	780018	X_780018_SNP [dm3] X_885985_SNP [dm6]	T	G	5.792e^-5	0.961	INTRON CG43867	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	4068104	3L_4068104_DEL [dm3] 3L_4068104_DEL [dm6]	AA	A	5.800e^-5	0.961	INTRON wit
3L	4314962	3L_4314962_SNP [dm3] 3L_4314962_SNP [dm6]	T	C	5.811e^-5	0.961	NON_SYNONYMOUS_CODING Claspin
3R	14119600	3R_14119600_SNP [dm3] 3R_18293878_SNP [dm6]	G	A	5.821e^-5	0.961	INTRON l_3_05822
2L	20032128	2L_20032128_SNP [dm3] 2L_20032128_SNP [dm6]	G	C	5.981e^-5	0.961	INTRON sNPF
3R	19420507	3R_19420507_SNP [dm3] 3R_23594785_SNP [dm6]	A	T	6.035e^-5	0.961	SPLICE_SITE_REGION CG16723 INTRON CG16723
3R	19420508	3R_19420508_SNP [dm3] 3R_23594786_SNP [dm6]	C	T	6.035e^-5	0.961	SPLICE_SITE_REGION CG16723 INTRON CG16723
3L	5725622	3L_5725622_SNP [dm3] 3L_5732522_SNP [dm6]	A	T	6.080e^-5	0.961	INTRON sif
2L	9704471	2L_9704471_SNP [dm3] 2L_9704471_SNP [dm6]	C	T	6.166e^-5	0.961	UPSTREAM CG31710 INTRON pelo & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	10953703	X_10953703_SNP [dm3] X_11059670_SNP [dm6]	G	A	6.270e^-5	0.961	UPSTREAM CG1545 INTERGENIC
2R	14662555	2R_14662555_DEL [dm3] 2R_18775050_DEL [dm6]	GGGATGTGTGAGTG...	G	6.295e^-5	0.961	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	3113735	2L_3113735_SNP [dm3] 2L_3113735_SNP [dm6]	C	A	6.313e^-5	0.961	INTRON toc
2L	12104222	2L_12104222_SNP [dm3] 2L_12104222_SNP [dm6]	C	G	6.321e^-5	0.961	UPSTREAM Aats-thr & 1 other INTRON Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	20839323	X_20839323_SNP [dm3] X_20968296_SNP [dm6]	G	T	6.341e^-5	0.961	INTERGENIC
3L	323160	3L_323160_SNP [dm3] 3L_323160_SNP [dm6]	T	G	6.409e^-5	0.961	SYNONYMOUS_CODING CG32344
2R	9662228	2R_9662228_SNP [dm3] 2R_13774723_SNP [dm6]	A	G	6.415e^-5	0.961	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	1138644	2L_1138644_SNP [dm3] 2L_1138644_SNP [dm6]	G	A	6.573e^-5	0.961	NON_SYNONYMOUS_CODING CG4577	TF binding site mE1_TFBS_chinmo
3R	4019545	3R_4019545_SNP [dm3] 3R_8193823_SNP [dm6]	G	C	6.583e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16234567	3L_16234567_SNP [dm3] 3L_16241467_SNP [dm6]	T	A	6.603e^-5	0.961	INTERGENIC
2R	18398152	2R_18398152_INS [dm3] 2R_22510647_INS [dm6]	C	CGGGTTTGC	6.642e^-5	0.961	INTRON px	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
3L	13313336	3L_13313336_SNP [dm3] 3L_13320236_SNP [dm6]	T	A	6.676e^-5	0.961	INTERGENIC
2R	10368345	2R_10368345_SNP [dm3] 2R_14480840_SNP [dm6]	A	G	6.735e^-5	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
2L	14068726	2L_14068726_SNP [dm3] 2L_14068726_SNP [dm6]	A	G	6.883e^-5	0.961	INTRON nAChRalpha5
2R	18030838	2R_18030838_SNP [dm3] 2R_22143333_SNP [dm6]	T	C	6.994e^-5	0.961	INTRON a	TF binding site BDTNP1_TFBS_twi
3L	1530930	3L_1530930_SNP [dm3] 3L_1530930_SNP [dm6]	A	G	7.042e^-5	0.961	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
3R	5354047	3R_5354047_SNP [dm3] 3R_9528325_SNP [dm6]	G	A	7.136e^-5	0.961	UTR_3_PRIME by DOWNSTREAM by
2L	22021106	2L_22021106_SNP [dm3] 2L_22021106_SNP [dm6]	G	A	7.236e^-5	0.961	NON_SYNONYMOUS_CODING tio DOWNSTREAM CR33987	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	21874814	X_21874814_INS [dm3] X_22472978_INS [dm6]	T	TT	7.264e^-5	0.961	UPSTREAM CG14613 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3L	1143897	3L_1143897_SNP [dm3] 3L_1143897_SNP [dm6]	T	G	7.356e^-5	0.961	SYNONYMOUS_CODING bab2	TF binding site mE1_TFBS_cad
2R	9747405	2R_9747405_SNP [dm3] 2R_13859900_SNP [dm6]	C	T	7.388e^-5	0.961	SYNONYMOUS_CODING Uba3 DOWNSTREAM CG16935	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18157348	2R_18157348_SNP [dm3] 2R_22269843_SNP [dm6]	G	A	7.507e^-5	0.961	INTRON dve	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
4	438060	4_438060_SNP [dm3] 4_417434_SNP [dm6]	C	T	7.634e^-5	0.961	INTERGENIC	transposable element FlyBase
3R	23891849	3R_23891849_SNP [dm3] 3R_28066127_SNP [dm6]	G	A	7.663e^-5	0.961	INTRON CG34362
2R	20970582	2R_20970582_SNP [dm3] 2R_25083059_SNP [dm6]	A	T	7.695e^-5	0.961	INTRON gol
3L	15225943	3L_15225943_SNP [dm3] 3L_15232843_SNP [dm6]	A	T	7.704e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24706846	3R_24706846_SNP [dm3] 3R_28881124_SNP [dm6]	A	T	7.787e^-5	0.961	NON_SYNONYMOUS_CODING CG14527 INTRON CG33203
2R	6579780	2R_6579780_SNP [dm3] 2R_10692275_SNP [dm6]	A	T	7.795e^-5	0.961	INTRON stan	enhancer mE1_CBP_Enhancers
3L	8746283	3L_8746283_SNP [dm3] 3L_8753183_SNP [dm6]	C	T	7.994e^-5	0.961	UPSTREAM Fhos INTERGENIC
2L	9674838	2L_9674838_SNP [dm3] 2L_9674838_SNP [dm6]	A	C	8.039e^-5	0.961	INTERGENIC
3R	16314606	3R_16314606_SNP [dm3] 3R_20488884_SNP [dm6]	T	G	8.070e^-5	0.961	INTERGENIC
3L	19477563	3L_19477563_SNP [dm3] 3L_19484463_SNP [dm6]	C	G	8.107e^-5	0.961	SYNONYMOUS_CODING brv1	TF binding site mE1_TFBS_cad
2R	6554200	2R_6554200_SNP [dm3] 2R_10666695_SNP [dm6]	T	A	8.188e^-5	0.961	INTERGENIC
3L	16234569	3L_16234569_SNP [dm3] 3L_16241469_SNP [dm6]	C	T	8.294e^-5	0.961	INTERGENIC
2L	12214068	2L_12214068_SNP [dm3] 2L_12214068_SNP [dm6]	C	G	8.344e^-5	0.961	INTRON aret
3R	19420940	3R_19420940_SNP [dm3] 3R_23595218_SNP [dm6]	T	A	8.423e^-5	0.961	INTRON CG16723
2L	8082499	2L_8082499_SNP [dm3] 2L_8082499_SNP [dm6]	G	A	8.460e^-5	0.961	UPSTREAM CR45257 & 1 other INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	5930955	2L_5930955_SNP [dm3] 2L_5930955_SNP [dm6]	A	G	8.475e^-5	0.961	INTRON dsf
2R	10368665	2R_10368665_SNP [dm3] 2R_14481160_SNP [dm6]	G	T	8.587e^-5	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	8082081	2L_8082081_SNP [dm3] 2L_8082081_SNP [dm6]	C	A	8.659e^-5	0.961	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	4686131	3L_4686131_SNP [dm3] 3L_4686131_SNP [dm6]	A	G	8.838e^-5	0.961	INTRON axo
2R	15745324	2R_15745324_SNP [dm3] 2R_19857819_SNP [dm6]	T	A	8.877e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
4	538946	4_538946_SNP [dm3] 4_518320_SNP [dm6]	C	T	8.905e^-5	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	20502346	3L_20502346_SNP [dm3] 3L_20509246_SNP [dm6]	C	T	8.921e^-5	0.961	UPSTREAM CG32425 INTRON CG32425	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	24103925	3R_24103925_SNP [dm3] 3R_28278203_SNP [dm6]	G	T	9.018e^-5	0.961	INTERGENIC
X	7440964	X_7440964_SNP [dm3] X_7546931_SNP [dm6]	A	T	9.051e^-5	0.961	INTRON CG32719
2R	10368289	2R_10368289_SNP [dm3] 2R_14480784_SNP [dm6]	A	G	9.153e^-5	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA
3L	12259179	3L_12259179_INS [dm3] 3L_12266079_INS [dm6]	A	GAAC	9.165e^-5	0.961	UPSTREAM app INTRON app	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	20331964	2L_20331964_SNP [dm3] 2L_20331964_SNP [dm6]	A	G	9.185e^-5	0.961	INTRON spir
3L	13413090	3L_13413090_SNP [dm3] 3L_13419990_SNP [dm6]	A	G	9.206e^-5	0.961	SYNONYMOUS_CODING CG32121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	8091133	2L_8091133_INS [dm3] 2L_8091133_INS [dm6]	T	TGCCCGATACGT...	9.244e^-5	0.961	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	8091154	2L_8091154_SNP [dm3] 2L_8091154_SNP [dm6]	G	T	9.244e^-5	0.961	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19870086	2L_19870086_SNP [dm3] 2L_19870086_SNP [dm6]	T	C	9.250e^-5	0.961	INTRON sick	TF binding site mE1_TFBS_HSA
2L	19870090	2L_19870090_SNP [dm3] 2L_19870090_SNP [dm6]	G	A	9.250e^-5	0.961	INTRON sick	TF binding site mE1_TFBS_HSA
2L	19870091	2L_19870091_SNP [dm3] 2L_19870091_SNP [dm6]	C	T	9.250e^-5	0.961	INTRON sick	TF binding site mE1_TFBS_HSA
2L	1733145	2L_1733145_SNP [dm3] 2L_1733145_SNP [dm6]	A	T	9.301e^-5	0.961	UPSTREAM CG17652 INTRON CG17646	TF binding site BDTNP1_TFBS_dl
2R	18508309	2R_18508309_SNP [dm3] 2R_22620804_SNP [dm6]	T	A	9.330e^-5	0.961	UTR_5_PRIME CG33143
3L	8255198	3L_8255198_SNP [dm3] 3L_8262098_SNP [dm6]	T	C	9.337e^-5	0.961	INTRON Dscam4
X	12962291	X_12962291_SNP [dm3] X_13068258_SNP [dm6]	T	C	9.393e^-5	0.961	SYNONYMOUS_CODING rad
2L	8082082	2L_8082082_SNP [dm3] 2L_8082082_SNP [dm6]	A	G	9.431e^-5	0.961	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	1196746	3L_1196746_SNP [dm3] 3L_1196746_SNP [dm6]	T	G	9.438e^-5	0.961	INTRON Aplip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	8332741	X_8332741_SNP [dm3] X_8438708_SNP [dm6]	G	T	9.447e^-5	0.961	UTR_5_PRIME CG1440 UPSTREAM CG12125 INTRON CG1440	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20331992	2L_20331992_SNP [dm3] 2L_20331992_SNP [dm6]	T	C	9.482e^-5	0.961	INTRON spir
3R	23580067	3R_23580067_SNP [dm3] 3R_27754345_SNP [dm6]	A	C	9.682e^-5	0.961	INTERGENIC
2R	14346977	2R_14346977_SNP [dm3] 2R_18459472_SNP [dm6]	T	G	9.714e^-5	0.961	DOWNSTREAM CG30116 INTRON CG30116
2L	1743970	2L_1743970_SNP [dm3] 2L_1743970_SNP [dm6]	A	G	9.879e^-5	0.961	INTRON CG17646
2L	12103987	2L_12103987_SNP [dm3] 2L_12103987_SNP [dm6]	G	A	9.911e^-5	0.961	SYNONYMOUS_CODING Aats-thr UPSTREAM Aats-thr & 1 other INTRON Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2460352	2L_2460352_SNP [dm3] 2L_2460352_SNP [dm6]	C	G	9.941e^-5	0.961	UPSTREAM tRNA:Y1:22Fb DOWNSTREAM dpp INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	16872782	2R_16872782_SNP [dm3] 2R_20985277_SNP [dm6]	A	G	9.977e^-5	0.961	INTRON CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15745298	2R_15745298_SNP [dm3] 2R_19857793_SNP [dm6]	T	C	9.982e^-5	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	9773508	3L_9773508_SNP [dm3] 3L_9780408_SNP [dm6]	T	C	1.009e^-4	0.961	NON_SYNONYMOUS_CODING CG8177 SPLICE_SITE_REGION CG8177 INTRON CG8177
2L	2025837	2L_2025837_SNP [dm3] 2L_2025837_SNP [dm6]	G	A	1.019e^-4	0.961	INTRON CG4238
3L	18383040	3L_18383040_SNP [dm3] 3L_18389940_SNP [dm6]	G	A	1.028e^-4	0.961	INTERGENIC
2L	20331596	2L_20331596_SNP [dm3] 2L_20331596_SNP [dm6]	G	C	1.033e^-4	0.961	INTRON spir
2L	20039942	2L_20039942_SNP [dm3] 2L_20039942_SNP [dm6]	G	C	1.036e^-4	0.961	INTRON sNPF
2L	8771158	2L_8771158_SNP [dm3] 2L_8771158_SNP [dm6]	T	C	1.041e^-4	0.961	SYNONYMOUS_CODING CG9465
2L	8771218	2L_8771218_SNP [dm3] 2L_8771218_SNP [dm6]	T	G	1.041e^-4	0.961	SYNONYMOUS_CODING CG9465
3L	19658725	3L_19658725_SNP [dm3] 3L_19665625_SNP [dm6]	T	C	1.049e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens mE1_TFBS_Trl
3L	10425061	3L_10425061_SNP [dm3] 3L_10431961_SNP [dm6]	G	A	1.052e^-4	0.961	NON_SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
3L	13412856	3L_13412856_SNP [dm3] 3L_13419756_SNP [dm6]	G	T	1.055e^-4	0.961	INTRON CG32121	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1530981	3L_1530981_SNP [dm3] 3L_1530981_SNP [dm6]	G	A	1.055e^-4	0.961	SYNONYMOUS_CODING Ir62a INTRON CG12090	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_inv
2L	19873308	2L_19873308_SNP [dm3] 2L_19873308_SNP [dm6]	A	T	1.062e^-4	0.961	INTRON sick	TF binding site BDTNP1_TFBS_prd
3R	3182399	3R_3182399_SNP [dm3] 3R_7356677_SNP [dm6]	T	A	1.072e^-4	0.961	INTERGENIC
2R	2429265	2R_2429265_SNP [dm3] 2R_6541760_SNP [dm6]	T	C	1.074e^-4	0.961	INTRON jing
3R	16995902	3R_16995902_SNP [dm3] 3R_21170180_SNP [dm6]	G	T	1.075e^-4	0.961	INTRON SNF4Agamma
3L	12790396	3L_12790396_DEL [dm3] 3L_12797296_DEL [dm6]	AAAATG	C	1.094e^-4	0.961	INTRON Atg1
3R	3162156	3R_3162156_SNP [dm3] 3R_7336434_SNP [dm6]	A	G	1.100e^-4	0.961	INTERGENIC
X	2328033	X_2328033_SNP [dm3] X_2434000_SNP [dm6]	G	C	1.115e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
3R	3159596	3R_3159596_SNP [dm3] 3R_7333874_SNP [dm6]	T	C	1.118e^-4	0.961	INTERGENIC
4	448044	4_448044_INS [dm3] 4_427418_INS [dm6]	A	ATCGACCAA	1.119e^-4	0.961	DOWNSTREAM CR43437 EXON CR44024	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	16818198	2R_16818198_SNP [dm3] 2R_20930693_SNP [dm6]	T	A	1.122e^-4	0.961	INTRON Rx
3L	20354164	3L_20354164_SNP [dm3] 3L_20361064_SNP [dm6]	G	A	1.124e^-4	0.961	SYNONYMOUS_CODING DNApol-alpha60 DOWNSTREAM Toll-9	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
4	490373	4_490373_SNP [dm3] 4_469747_SNP [dm6]	G	T	1.127e^-4	0.961	UTR_3_PRIME Asator INTRON pncr013:4
2R	15745289	2R_15745289_SNP [dm3] 2R_19857784_SNP [dm6]	A	G	1.136e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	6575807	2L_6575807_SNP [dm3] 2L_6575807_SNP [dm6]	G	A	1.142e^-4	0.961	INTRON CG11319
3L	15222339	3L_15222339_SNP [dm3] 3L_15229239_SNP [dm6]	C	T	1.150e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16995921	3R_16995921_SNP [dm3] 3R_21170199_SNP [dm6]	C	T	1.153e^-4	0.961	INTRON SNF4Agamma
X	20839624	X_20839624_SNP [dm3] X_20968597_SNP [dm6]	A	G	1.154e^-4	0.961	INTERGENIC
3L	11738988	3L_11738988_SNP [dm3] 3L_11745888_SNP [dm6]	A	G	1.164e^-4	0.961	INTRON CG6024
2L	8771125	2L_8771125_SNP [dm3] 2L_8771125_SNP [dm6]	G	A	1.167e^-4	0.961	SYNONYMOUS_CODING CG9465
3R	16995916	3R_16995916_SNP [dm3] 3R_21170194_SNP [dm6]	A	G	1.168e^-4	0.961	INTRON SNF4Agamma
3L	13412033	3L_13412033_SNP [dm3] 3L_13418933_SNP [dm6]	A	G	1.169e^-4	0.961	SYNONYMOUS_CODING CG32121	TF binding site mE1_TFBS_chinmo
2R	10367753	2R_10367753_SNP [dm3] 2R_14480248_SNP [dm6]	G	A	1.171e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2L	20235705	2L_20235705_SNP [dm3] 2L_20235705_SNP [dm6]	T	C	1.188e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16995899	3R_16995899_SNP [dm3] 3R_21170177_SNP [dm6]	C	T	1.191e^-4	0.961	INTRON SNF4Agamma
3L	19659467	3L_19659467_SNP [dm3] 3L_19666367_SNP [dm6]	T	A	1.192e^-4	0.961	INTERGENIC
3L	19347489	3L_19347489_SNP [dm3] 3L_19354389_SNP [dm6]	G	T	1.194e^-4	0.961	INTRON CG32206
2R	8801646	2R_8801646_SNP [dm3] 2R_12914141_SNP [dm6]	T	A	1.200e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	3113718	2L_3113718_SNP [dm3] 2L_3113718_SNP [dm6]	A	T	1.207e^-4	0.961	INTRON toc
3R	22674523	3R_22674523_SNP [dm3] 3R_26848801_SNP [dm6]	A	G	1.211e^-4	0.961	INTRON Lerp	TF binding site mE1_TFBS_chinmo
3L	18084796	3L_18084796_SNP [dm3] 3L_18091696_SNP [dm6]	G	T	1.216e^-4	0.961	INTRON CG13698
2R	14346990	2R_14346990_SNP [dm3] 2R_18459485_SNP [dm6]	C	T	1.220e^-4	0.961	DOWNSTREAM CG30116 INTRON CG30116
2L	19872555	2L_19872555_SNP [dm3] 2L_19872555_SNP [dm6]	A	C	1.223e^-4	0.961	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	2526309	2L_2526309_SNP [dm3] 2L_2526309_SNP [dm6]	G	T	1.227e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3R	12012348	3R_12012348_SNP [dm3] 3R_16186626_SNP [dm6]	G	A	1.229e^-4	0.961	SYNONYMOUS_CODING Bin1 UPSTREAM sra DOWNSTREAM CG8927	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_sens
3L	10424651	3L_10424651_SNP [dm3] 3L_10431551_SNP [dm6]	G	A	1.231e^-4	0.961	NON_SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
2L	9234772	2L_9234772_SNP [dm3] 2L_9234772_SNP [dm6]	C	T	1.254e^-4	0.961	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	9234785	2L_9234785_SNP [dm3] 2L_9234785_SNP [dm6]	A	G	1.254e^-4	0.961	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	10399241	2R_10399241_DEL [dm3] 2R_14511736_DEL [dm6]	AA	A	1.254e^-4	0.961	UTR_3_PRIME Asx DOWNSTREAM Cpr51A
2L	20039958	2L_20039958_SNP [dm3] 2L_20039958_SNP [dm6]	A	G	1.256e^-4	0.961	INTRON sNPF
2L	20039972	2L_20039972_SNP [dm3] 2L_20039972_SNP [dm6]	T	C	1.256e^-4	0.961	INTRON sNPF
2L	3883087	2L_3883087_SNP [dm3] 2L_3883087_SNP [dm6]	A	G	1.261e^-4	0.961	INTRON capu	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	13438132	X_13438132_INS [dm3] X_13544099_INS [dm6]	A	AA	1.263e^-4	0.961	INTRON Cpr12A
3R	26611717	3R_26611717_SNP [dm3] 3R_30785995_SNP [dm6]	T	C	1.277e^-4	0.961	INTRON zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3L	7940811	3L_7940811_SNP [dm3] 3L_7947711_SNP [dm6]	A	G	1.286e^-4	0.961	UPSTREAM exex INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	3402570	2R_3402570_SNP [dm3] 2R_7515065_SNP [dm6]	T	C	1.289e^-4	0.961	SYNONYMOUS_CODING CG1603	TF binding site mE1_TFBS_sens
2R	11700865	2R_11700865_INS [dm3] 2R_15813360_INS [dm6]	C	CC	1.294e^-4	0.961	INTRON tun & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	1425785	X_1425785_SNP [dm3] X_1531752_SNP [dm6]	T	G	1.294e^-4	0.961	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
2L	3424579	2L_3424579_SNP [dm3] 2L_3424579_SNP [dm6]	A	C	1.297e^-4	0.961	INTRON pgant2
3L	5555533	3L_5555533_SNP [dm3] 3L_5562433_SNP [dm6]	G	A	1.299e^-4	0.961	SYNONYMOUS_CODING Sucb UPSTREAM sinu	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10368497	2R_10368497_SNP [dm3] 2R_14480992_SNP [dm6]	C	G	1.299e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	10368680	2R_10368680_SNP [dm3] 2R_14481175_SNP [dm6]	C	G	1.300e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	783428	X_783428_SNP [dm3] X_889395_SNP [dm6]	T	C	1.304e^-4	0.961	INTRON CG43867
3L	18944216	3L_18944216_SNP [dm3] 3L_18951116_SNP [dm6]	G	C	1.309e^-4	0.961	INTRON CG6836
3R	19420849	3R_19420849_SNP [dm3] 3R_23595127_SNP [dm6]	A	G	1.331e^-4	0.961	SYNONYMOUS_CODING CG16723
3L	11267910	3L_11267910_SNP [dm3] 3L_11274810_SNP [dm6]	T	G	1.346e^-4	0.961	UPSTREAM CR44720 INTERGENIC
2R	1840588	2R_1840588_SNP [dm3] 2R_5953083_SNP [dm6]	G	T	1.351e^-4	0.961	INTERGENIC
2L	19872396	2L_19872396_SNP [dm3] 2L_19872396_SNP [dm6]	G	A	1.354e^-4	0.961	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	20249668	2L_20249668_SNP [dm3] 2L_20249668_SNP [dm6]	C	A	1.361e^-4	0.961	DOWNSTREAM CR40341 EXON CR40172
X	12962327	X_12962327_DEL [dm3] X_13068294_DEL [dm6]	AA	A	1.367e^-4	0.961	INTRON rad
3L	5555158	3L_5555158_SNP [dm3] 3L_5562058_SNP [dm6]	T	A	1.370e^-4	0.961	SYNONYMOUS_CODING Sucb UPSTREAM sinu	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	20352200	3L_20352200_SNP [dm3] 3L_20359100_SNP [dm6]	G	C	1.374e^-4	0.961	SYNONYMOUS_CODING CG5665 DOWNSTREAM kin17 & 1 other	TF binding site mE1_TFBS_HSA
2L	3189040	2L_3189040_SNP [dm3] 2L_3189040_SNP [dm6]	A	C	1.378e^-4	0.961	INTRON CG34393
X	21055523	X_21055523_SNP [dm3] X_21184496_SNP [dm6]	G	C	1.387e^-4	0.961	INTERGENIC
3R	10376141	3R_10376141_SNP [dm3] 3R_14550419_SNP [dm6]	A	C	1.390e^-4	0.961	INTRON Pde6
3L	10686595	3L_10686595_SNP [dm3] 3L_10693495_SNP [dm6]	G	A	1.401e^-4	0.961	SYNONYMOUS_CODING CG6463 UPSTREAM CG33493 DOWNSTREAM CG11811 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	10593340	3R_10593340_SNP [dm3] 3R_14767618_SNP [dm6]	A	G	1.413e^-4	0.961	INTRON jvl
3R	4022307	3R_4022307_SNP [dm3] 3R_8196585_SNP [dm6]	A	G	1.414e^-4	0.961	DOWNSTREAM CR43302 INTERGENIC
3R	26092517	3R_26092517_SNP [dm3] 3R_30266795_SNP [dm6]	G	T	1.428e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	14234357	3L_14234357_SNP [dm3] 3L_14241257_SNP [dm6]	G	C	1.429e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26611763	3R_26611763_SNP [dm3] 3R_30786041_SNP [dm6]	G	A	1.432e^-4	0.961	SYNONYMOUS_CODING zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	2966484	3R_2966484_SNP [dm3] 3R_7140762_SNP [dm6]	A	C	1.462e^-4	0.961	INTRON Fer1	transposable element FlyBase
2L	20346932	2L_20346932_SNP [dm3] 2L_20346932_SNP [dm6]	A	C	1.463e^-4	0.961	INTRON spir	TF binding site mE1_TFBS_cad mE1_TFBS_inv
3R	3181529	3R_3181529_SNP [dm3] 3R_7355807_SNP [dm6]	C	T	1.472e^-4	0.961	INTERGENIC
X	16116571	X_16116571_SNP [dm3] X_16222538_SNP [dm6]	C	T	1.476e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi
2L	20366072	2L_20366072_SNP [dm3] 2L_20366072_SNP [dm6]	T	C	1.478e^-4	0.961	DOWNSTREAM RtGEF INTERGENIC
3R	13644442	3R_13644442_SNP [dm3] 3R_17818720_SNP [dm6]	C	T	1.478e^-4	0.961	INTRON tinc
2R	10368231	2R_10368231_SNP [dm3] 2R_14480726_SNP [dm6]	A	T	1.479e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10368233	2R_10368233_SNP [dm3] 2R_14480728_SNP [dm6]	A	C	1.479e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	8712346	2L_8712346_SNP [dm3] 2L_8712346_SNP [dm6]	T	G	1.493e^-4	0.961	INTRON raw
3L	12794536	3L_12794536_SNP [dm3] 3L_12801436_SNP [dm6]	T	C	1.498e^-4	0.961	INTRON Atg1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12104271	2L_12104271_SNP [dm3] 2L_12104271_SNP [dm6]	C	G	1.508e^-4	0.961	UPSTREAM Aats-thr & 1 other INTRON Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	21875844	3R_21875844_INS [dm3] 3R_26050122_INS [dm6]	A	AA	1.511e^-4	0.961	DOWNSTREAM gro INTRON Exo84
2R	3910538	2R_3910538_INS [dm3] 2R_8023033_INS [dm6]	T	TT	1.523e^-4	0.961	EXON CR45267	TF binding site mE1_TFBS_HSA
3R	13277381	3R_13277381_SNP [dm3] 3R_17451659_SNP [dm6]	C	T	1.523e^-4	0.961	INTERGENIC
2R	16873105	2R_16873105_SNP [dm3] 2R_20985600_SNP [dm6]	C	T	1.532e^-4	0.961	SYNONYMOUS_CODING CG15651	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2347595	3R_2347595_SNP [dm3] 3R_6521873_SNP [dm6]	G	A	1.534e^-4	0.961	INTERGENIC
3R	18644165	3R_18644165_SNP [dm3] 3R_22818443_SNP [dm6]	C	T	1.536e^-4	0.961	INTERGENIC
2L	8769553	2L_8769553_SNP [dm3] 2L_8769553_SNP [dm6]	G	C	1.538e^-4	0.961	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
3L	18200945	3L_18200945_SNP [dm3] 3L_18207845_SNP [dm6]	C	T	1.552e^-4	0.961	INTERGENIC
3L	12790403	3L_12790403_SNP [dm3] 3L_12797303_SNP [dm6]	T	A	1.553e^-4	0.961	INTRON Atg1
2L	1744196	2L_1744196_SNP [dm3] 2L_1744196_SNP [dm6]	A	G	1.556e^-4	0.961	INTRON CG17646
2L	12502459	2L_12502459_SNP [dm3] 2L_12502459_SNP [dm6]	T	G	1.562e^-4	0.961	INTRON bun
X	775540	X_775540_SNP [dm3] X_881507_SNP [dm6]	G	A	1.568e^-4	0.961	SYNONYMOUS_CODING CG43867 INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	12502442	2L_12502442_DEL [dm3] 2L_12502442_DEL [dm6]	AAAATGCTCCGA...	G	1.572e^-4	0.961	INTRON bun
2L	7520590	2L_7520590_SNP [dm3] 2L_7520590_SNP [dm6]	T	C	1.573e^-4	0.961	DOWNSTREAM CR44082 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6575839	2L_6575839_SNP [dm3] 2L_6575839_SNP [dm6]	C	A	1.577e^-4	0.961	INTRON CG11319
X	16950246	X_16950246_SNP [dm3] X_17056213_SNP [dm6]	T	C	1.580e^-4	0.961	INTRON CG45002
2R	19552456	2R_19552456_SNP [dm3] 2R_23664933_SNP [dm6]	G	T	1.587e^-4	0.961	INTRON Pde8
X	17391553	X_17391553_SNP [dm3] X_17497520_SNP [dm6]	G	T	1.598e^-4	0.961	DOWNSTREAM CR44692 INTRON CG43658	TF binding site mE1_TFBS_chinmo
2L	13917627	2L_13917627_SNP [dm3] 2L_13917627_SNP [dm6]	C	T	1.614e^-4	0.961	SYNONYMOUS_CODING Ance-3	TF binding site BDTNP1_TFBS_twi
X	6740150	X_6740150_SNP [dm3] X_6846117_SNP [dm6]	A	G	1.616e^-4	0.961	SYNONYMOUS_CODING CG4557	TF binding site BDTNP1_TFBS_Mad BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	16847876	2R_16847876_SNP [dm3] 2R_20960371_SNP [dm6]	C	T	1.627e^-4	0.961	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	16175347	X_16175347_INS [dm3] X_16281314_INS [dm6]	C	CT	1.629e^-4	0.961	INTRON eas
3R	22716633	3R_22716633_SNP [dm3] 3R_26890911_SNP [dm6]	G	A	1.649e^-4	0.961	INTRON T48	regulatory region REDfly_CRMs
2L	12502465	2L_12502465_DEL [dm3] 2L_12502465_DEL [dm6]	TTAGGA	T	1.651e^-4	0.961	INTRON bun
2L	1744689	2L_1744689_SNP [dm3] 2L_1744689_SNP [dm6]	C	G	1.652e^-4	0.961	INTRON CG17646
X	12874880	X_12874880_SNP [dm3] X_12980847_SNP [dm6]	A	G	1.660e^-4	0.961	INTERGENIC
2L	19931398	2L_19931398_SNP [dm3] 2L_19931398_SNP [dm6]	C	A	1.661e^-4	0.961	INTRON sick
X	8089530	X_8089530_SNP [dm3] X_8195497_SNP [dm6]	A	C	1.662e^-4	0.961	INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2R	8551615	2R_8551615_SNP [dm3] 2R_12664110_SNP [dm6]	A	G	1.666e^-4	0.961	INTRON nemy
2L	22045784	2L_22045784_SNP [dm3] 2L_22045784_SNP [dm6]	T	C	1.667e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu transposable element FlyBase
2R	6539469	2R_6539469_SNP [dm3] 2R_10651964_SNP [dm6]	G	T	1.668e^-4	0.961	INTERGENIC
X	3172007	X_3172007_SNP [dm3] X_3277974_SNP [dm6]	G	A	1.678e^-4	0.961	INTRON dnc
X	12962326	X_12962326_SNP [dm3] X_13068293_SNP [dm6]	A	T	1.684e^-4	0.961	INTRON rad
3L	13369184	3L_13369184_SNP [dm3] 3L_13376084_SNP [dm6]	A	G	1.700e^-4	0.961	INTERGENIC
3L	14334800	3L_14334800_SNP [dm3] 3L_14341700_SNP [dm6]	C	G	1.702e^-4	0.961	INTRON fz
X	15520256	X_15520256_SNP [dm3] X_15626223_SNP [dm6]	T	G	1.704e^-4	0.961	UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25189263	3R_25189263_SNP [dm3] 3R_29363541_SNP [dm6]	T	C	1.717e^-4	0.961	INTERGENIC
2L	6768345	2L_6768345_SNP [dm3] 2L_6768345_SNP [dm6]	G	T	1.730e^-4	0.961	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3882286	2L_3882286_SNP [dm3] 2L_3882286_SNP [dm6]	G	A	1.739e^-4	0.961	INTRON capu
2L	6575976	2L_6575976_SNP [dm3] 2L_6575976_SNP [dm6]	A	G	1.746e^-4	0.961	INTRON CG11319
4	512046	4_512046_SNP [dm3] 4_491420_SNP [dm6]	T	C	1.770e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_dl transposable element FlyBase
3R	15128270	3R_15128270_SNP [dm3] 3R_19302548_SNP [dm6]	C	T	1.770e^-4	0.961	DOWNSTREAM Dl INTERGENIC
3R	3196137	3R_3196137_SNP [dm3] 3R_7370415_SNP [dm6]	C	A	1.772e^-4	0.961	INTERGENIC
2R	10367795	2R_10367795_SNP [dm3] 2R_14480290_SNP [dm6]	T	A	1.776e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site mE1_TFBS_bab1
2R	7257877	2R_7257877_SNP [dm3] 2R_11370372_SNP [dm6]	C	T	1.779e^-4	0.961	UTR_3_PRIME Tapdelta DOWNSTREAM CG13204	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	2860653	2R_2860653_SNP [dm3] 2R_6973148_SNP [dm6]	G	T	1.794e^-4	0.961	NON_SYNONYMOUS_CODING Cyp6u1 DOWNSTREAM CG30157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	16533329	X_16533329_SNP [dm3] X_16639296_SNP [dm6]	C	A	1.794e^-4	0.961	DOWNSTREAM SmG & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3R	3028828	3R_3028828_SNP [dm3] 3R_7203106_SNP [dm6]	C	T	1.808e^-4	0.961	NON_SYNONYMOUS_CODING CG14609
4	522388	4_522388_SNP [dm3] 4_501762_SNP [dm6]	G	T	1.828e^-4	0.961	UPSTREAM zfh2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl
2L	2954228	2L_2954228_SNP [dm3] 2L_2954228_SNP [dm6]	A	G	1.840e^-4	0.961	UTR_3_PRIME lilli UPSTREAM Rbp9	TF binding site BDTNP1_TFBS_twi
2R	16598672	2R_16598672_SNP [dm3] 2R_20711167_SNP [dm6]	A	T	1.842e^-4	0.961	INTRON dpr
X	7946941	X_7946941_SNP [dm3] X_8052908_SNP [dm6]	A	G	1.858e^-4	0.961	SYNONYMOUS_CODING fs_1_h	TF binding site mE1_TFBS_sens
2R	14875546	2R_14875546_SNP [dm3] 2R_18988041_SNP [dm6]	T	A	1.870e^-4	0.961	INTRON tn
X	6368986	X_6368986_SNP [dm3] X_6474953_SNP [dm6]	C	G	1.885e^-4	0.961	INTRON CG42340
X	3159048	X_3159048_SNP [dm3] X_3265015_SNP [dm6]	T	A	1.916e^-4	0.961	INTRON dnc
X	2338482	X_2338482_SNP [dm3] X_2444449_SNP [dm6]	G	A	1.920e^-4	0.961	UTR_3_PRIME boi UPSTREAM tko	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3L	11267918	3L_11267918_SNP [dm3] 3L_11274818_SNP [dm6]	G	C	1.926e^-4	0.961	UPSTREAM CR44720 INTERGENIC
X	17102461	X_17102461_SNP [dm3] X_17208428_SNP [dm6]	T	C	1.929e^-4	0.961	UPSTREAM CG32563 DOWNSTREAM CG32564 & 1 other INTERGENIC
2L	20332866	2L_20332866_SNP [dm3] 2L_20332866_SNP [dm6]	A	T	1.931e^-4	0.961	INTRON spir	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12703955	2R_12703955_SNP [dm3] 2R_16816450_SNP [dm6]	T	C	1.943e^-4	0.961	UPSTREAM CR44380 & 1 other INTERGENIC
2L	22053508	2L_22053508_SNP [dm3] 2L_22053508_SNP [dm6]	G	A	1.945e^-4	0.961	DOWNSTREAM CG34173 INTERGENIC	transposable element FlyBase
3L	18944174	3L_18944174_SNP [dm3] 3L_18951074_SNP [dm6]	T	A	1.951e^-4	0.961	INTRON CG6836
2R	16847493	2R_16847493_SNP [dm3] 2R_20959988_SNP [dm6]	A	G	1.952e^-4	0.961	INTRON hbn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	20171826	2R_20171826_SNP [dm3] 2R_24284303_SNP [dm6]	C	T	1.957e^-4	0.961	UPSTREAM nvy INTRON nvy
2R	15292463	2R_15292463_SNP [dm3] 2R_19404958_SNP [dm6]	G	A	1.999e^-4	0.961	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12105268	3L_12105268_SNP [dm3] 3L_12112168_SNP [dm6]	G	A	2.000e^-4	0.961	INTERGENIC
2L	20303136	2L_20303136_SNP [dm3] 2L_20303136_SNP [dm6]	T	C	2.000e^-4	0.961	INTERGENIC
2R	8494288	2R_8494288_SNP [dm3] 2R_12606783_SNP [dm6]	A	G	2.007e^-4	0.961	INTRON Amph
3R	5868548	3R_5868548_SNP [dm3] 3R_10042826_SNP [dm6]	G	A	2.024e^-4	0.961	START_GAINED Mical UTR_5_PRIME Mical UPSTREAM CG3909 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	12105302	3L_12105302_SNP [dm3] 3L_12112202_SNP [dm6]	T	C	2.026e^-4	0.961	INTERGENIC
3L	3157832	3L_3157832_SNP [dm3] 3L_3157832_SNP [dm6]	G	A	2.031e^-4	0.961	UTR_3_PRIME BtbVII DOWNSTREAM NDUFS3	TF binding site mE1_TFBS_cad
2L	8083304	2L_8083304_SNP [dm3] 2L_8083304_SNP [dm6]	C	T	2.035e^-4	0.961	UPSTREAM Bsg & 1 other DOWNSTREAM CR45257 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	11512649	3L_11512649_SNP [dm3] 3L_11519549_SNP [dm6]	G	T	2.043e^-4	0.961	DOWNSTREAM CG7512 INTRON Fuca
3L	1309397	3L_1309397_SNP [dm3] 3L_1309397_SNP [dm6]	G	T	2.044e^-4	0.961	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13938088	2L_13938088_SNP [dm3] 2L_13938088_SNP [dm6]	T	C	2.048e^-4	0.961	INTRON Ance-3
3L	19669218	3L_19669218_SNP [dm3] 3L_19676118_SNP [dm6]	A	C	2.053e^-4	0.961	INTERGENIC
2R	9793118	2R_9793118_SNP [dm3] 2R_13905613_SNP [dm6]	T	G	2.058e^-4	0.961	INTRON shot
2R	10328936	2R_10328936_SNP [dm3] 2R_14441431_SNP [dm6]	T	C	2.059e^-4	0.961	INTRON Oaz
4	530336	4_530336_SNP [dm3] 4_509710_SNP [dm6]	C	T	2.063e^-4	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
X	761729	X_761729_SNP [dm3] X_867696_SNP [dm6]	A	C	2.065e^-4	0.961	INTRON CG43867
2R	10368637	2R_10368637_SNP [dm3] 2R_14481132_SNP [dm6]	C	T	2.066e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20330349	2L_20330349_SNP [dm3] 2L_20330349_SNP [dm6]	C	A	2.071e^-4	0.961	INTRON spir
2L	12632430	2L_12632430_SNP [dm3] 2L_12632430_SNP [dm6]	A	G	2.074e^-4	0.961	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
4	532700	4_532700_SNP [dm3] 4_512074_SNP [dm6]	G	T	2.077e^-4	0.961	INTRON zfh2
2L	12103603	2L_12103603_SNP [dm3] 2L_12103603_SNP [dm6]	T	C	2.102e^-4	0.961	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
3R	13277392	3R_13277392_SNP [dm3] 3R_17451670_SNP [dm6]	G	T	2.103e^-4	0.961	INTERGENIC
3R	9736374	3R_9736374_DEL [dm3] 3R_13910652_DEL [dm6]	ATTTAAACTATAATACA...	A	2.105e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	2502953	3L_2502953_SNP [dm3] 3L_2502953_SNP [dm6]	G	A	2.110e^-4	0.961	UPSTREAM CR45425 & 1 other INTRON CG16758	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17569024	X_17569024_SNP [dm3] X_17674991_SNP [dm6]	G	T	2.110e^-4	0.961	INTRON chas
2L	8308442	2L_8308442_SNP [dm3] 2L_8308442_SNP [dm6]	A	T	2.116e^-4	0.961	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	19999154	2L_19999154_DEL [dm3] 2L_19999154_DEL [dm6]	TT	T	2.117e^-4	0.961	DOWNSTREAM CR44908 INTRON CG43861
3L	11219643	3L_11219643_SNP [dm3] 3L_11226543_SNP [dm6]	G	T	2.122e^-4	0.961	SYNONYMOUS_CODING CG42671	TF binding site mE1_TFBS_cad
3L	10423836	3L_10423836_SNP [dm3] 3L_10430736_SNP [dm6]	A	G	2.133e^-4	0.961	SYNONYMOUS_CODING Ir67b
3R	15321895	3R_15321895_SNP [dm3] 3R_19496173_SNP [dm6]	T	G	2.142e^-4	0.961	INTRON Dys
2R	18466092	2R_18466092_SNP [dm3] 2R_22578587_SNP [dm6]	G	C	2.145e^-4	0.961	INTRON dnr1	TF binding site mE1_TFBS_chinmo
X	767710	X_767710_SNP [dm3] X_873677_SNP [dm6]	G	A	2.153e^-4	0.961	INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1960233	3L_1960233_SNP [dm3] 3L_1960233_SNP [dm6]	A	G	2.156e^-4	0.961	SYNONYMOUS_CODING mv
3L	19348863	3L_19348863_SNP [dm3] 3L_19355763_SNP [dm6]	C	A	2.192e^-4	0.961	INTRON CG32206
3L	19535885	3L_19535885_SNP [dm3] 3L_19542785_SNP [dm6]	T	C	2.198e^-4	0.961	NON_SYNONYMOUS_CODING CG9279 UPSTREAM CG43885	TF binding site mE1_TFBS_cad
2L	12632530	2L_12632530_INS [dm3] 2L_12632530_INS [dm6]	C	CCC	2.198e^-4	0.961	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	12900565	3L_12900565_SNP [dm3] 3L_12907465_SNP [dm6]	A	T	2.199e^-4	0.961	INTERGENIC
3L	321083	3L_321083_SNP [dm3] 3L_321083_SNP [dm6]	C	T	2.202e^-4	0.961	DOWNSTREAM CG32344 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_sens
3L	13371475	3L_13371475_SNP [dm3] 3L_13378375_SNP [dm6]	T	G	2.205e^-4	0.961	UPSTREAM SNCF INTRON CG14111	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20330260	2L_20330260_SNP [dm3] 2L_20330260_SNP [dm6]	C	A	2.207e^-4	0.961	INTRON spir
3L	1480310	3L_1480310_SNP [dm3] 3L_1480310_SNP [dm6]	A	G	2.216e^-4	0.961	INTRON stet	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	8491139	2R_8491139_DEL [dm3] 2R_12603634_DEL [dm6]	AT	A	2.226e^-4	0.961	INTRON Amph
2L	20440528	2L_20440528_SNP [dm3] 2L_20440528_SNP [dm6]	T	C	2.231e^-4	0.961	INTRON CG31688	TF binding site BDTNP1_TFBS_twi
X	4129216	X_4129216_SNP [dm3] X_4235183_SNP [dm6]	T	A	2.232e^-4	0.961	INTERGENIC
3R	16575017	3R_16575017_SNP [dm3] 3R_20749295_SNP [dm6]	T	C	2.232e^-4	0.961	SYNONYMOUS_CODING CG42322 UPSTREAM Prosalpha4T1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14119726	3R_14119726_SNP [dm3] 3R_18294004_SNP [dm6]	A	T	2.234e^-4	0.961	INTRON l_3_05822
3L	1421486	3L_1421486_INS [dm3] 3L_1421486_INS [dm6]	T	TCCGGT	2.244e^-4	0.961	UTR_3_PRIME CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad
X	9472052	X_9472052_SNP [dm3] X_9578019_SNP [dm6]	G	C	2.248e^-4	0.961	INTRON CG32699
2L	12103497	2L_12103497_SNP [dm3] 2L_12103497_SNP [dm6]	C	A	2.263e^-4	0.961	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4228707	3L_4228707_SNP [dm3] 3L_4228707_SNP [dm6]	T	G	2.274e^-4	0.961	INTRON ImpL2	TF binding site BDTNP1_TFBS_dl
2L	2383297	2L_2383297_SNP [dm3] 2L_2383297_SNP [dm6]	T	A	2.277e^-4	0.961	UTR_5_PRIME CG9870 DOWNSTREAM Eogt
3L	7707077	3L_7707077_SNP [dm3] 3L_7713977_SNP [dm6]	A	T	2.280e^-4	0.961	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7707087	3L_7707087_SNP [dm3] 3L_7713987_SNP [dm6]	T	C	2.280e^-4	0.961	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	22907201	3R_22907201_SNP [dm3] 3R_27081479_SNP [dm6]	A	C	2.282e^-4	0.961	SYNONYMOUS_CODING CG14257 INTRON CG14257
2R	5353106	2R_5353106_SNP [dm3] 2R_9465601_SNP [dm6]	G	A	2.286e^-4	0.961	INTRON Camta
3R	4024001	3R_4024001_SNP [dm3] 3R_8198279_SNP [dm6]	G	A	2.287e^-4	0.961	UPSTREAM CR43302 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	498935	4_498935_SNP [dm3] 4_478309_SNP [dm6]	T	A	2.288e^-4	0.961	INTRON Asator
X	15520258	X_15520258_SNP [dm3] X_15626225_SNP [dm6]	A	T	2.290e^-4	0.961	UTR_5_PRIME sog	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19430499	3R_19430499_SNP [dm3] 3R_23604777_SNP [dm6]	C	A	2.291e^-4	0.961	DOWNSTREAM CG31145 INTRON CG10184	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2693639	2L_2693639_SNP [dm3] 2L_2693639_SNP [dm6]	A	G	2.295e^-4	0.961	INTRON CG31690	TF binding site mE1_TFBS_chinmo
2R	11530508	2R_11530508_SNP [dm3] 2R_15643003_SNP [dm6]	A	G	2.299e^-4	0.961	INTRON CG42524
X	20838889	X_20838889_INS [dm3] X_20967862_INS [dm6]	A	AG	2.300e^-4	0.961	INTERGENIC
3R	13498618	3R_13498618_SNP [dm3] 3R_17672896_SNP [dm6]	T	C	2.304e^-4	0.961	DOWNSTREAM alt INTRON ald
3R	26894115	3R_26894115_SNP [dm3] 3R_31068393_SNP [dm6]	A	T	2.312e^-4	0.961	INTRON Sox100B
X	4129207	X_4129207_INS [dm3] X_4235174_INS [dm6]	G	GTGCATTTTCTAGTATTTAG...	2.317e^-4	0.961	INTERGENIC
3R	26405664	3R_26405664_SNP [dm3] 3R_30579942_SNP [dm6]	T	C	2.319e^-4	0.961	SYNONYMOUS_CODING CG9702
X	13438136	X_13438136_INS [dm3] X_13544103_INS [dm6]	C	CTTATC	2.319e^-4	0.961	INTRON Cpr12A
3L	5267858	3L_5267858_SNP [dm3] 3L_5274758_SNP [dm6]	C	G	2.322e^-4	0.961	INTRON shep	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	13277373	3R_13277373_SNP [dm3] 3R_17451651_SNP [dm6]	A	C	2.324e^-4	0.961	INTERGENIC
3L	11267923	3L_11267923_SNP [dm3] 3L_11274823_SNP [dm6]	T	A	2.325e^-4	0.961	UPSTREAM CR44720 INTERGENIC
X	12361526	X_12361526_SNP [dm3] X_12467493_SNP [dm6]	C	T	2.328e^-4	0.961	INTRON CG42258	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17683817	3L_17683817_SNP [dm3] 3L_17690717_SNP [dm6]	C	T	2.328e^-4	0.961	INTRON Ccn
2R	11530428	2R_11530428_SNP [dm3] 2R_15642923_SNP [dm6]	T	A	2.330e^-4	0.961	INTRON CG42524
2R	13540995	2R_13540995_DEL [dm3] 2R_17653490_DEL [dm6]	CCTGGC	C	2.342e^-4	0.961	INTRON CCHa1-R
X	10202785	X_10202785_SNP [dm3] X_10308752_SNP [dm6]	T	C	2.348e^-4	0.961	UTR_5_PRIME alpha-Man-I INTRON alpha-Man-I	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sbb
X	19668914	X_19668914_SNP [dm3] X_19774881_SNP [dm6]	A	G	2.351e^-4	0.961	INTRON vfl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	3212757	3R_3212757_SNP [dm3] 3R_7387035_SNP [dm6]	T	G	2.354e^-4	0.961	UPSTREAM CR45560 INTERGENIC
3R	3212767	3R_3212767_SNP [dm3] 3R_7387045_SNP [dm6]	T	A	2.354e^-4	0.961	UPSTREAM CR45560 INTERGENIC
3R	3212768	3R_3212768_DEL [dm3] 3R_7387046_DEL [dm6]	GTCCAAATGGCACCACGTCT...	G	2.354e^-4	0.961	UPSTREAM CR45560 INTERGENIC
3R	3212799	3R_3212799_DEL [dm3] 3R_7387077_DEL [dm6]	AT	A	2.354e^-4	0.961	UPSTREAM CR45560 INTERGENIC
3R	3212805	3R_3212805_MNP [dm3] 3R_7387083_MNP [dm6]	TTT	CAC	2.354e^-4	0.961	UPSTREAM CR45560 INTERGENIC
3R	2966497	3R_2966497_SNP [dm3] 3R_7140775_SNP [dm6]	T	A	2.363e^-4	0.961	INTRON Fer1	transposable element FlyBase
3R	26334451	3R_26334451_SNP [dm3] 3R_30508729_SNP [dm6]	G	T	2.370e^-4	0.961	NON_SYNONYMOUS_CODING CG34041 DOWNSTREAM CG15539
2R	6826683	2R_6826683_SNP [dm3] 2R_10939178_SNP [dm6]	G	A	2.371e^-4	0.961	UTR_3_PRIME Spn47C	TF binding site mE1_TFBS_cad
3L	9556962	3L_9556962_SNP [dm3] 3L_9563862_SNP [dm6]	G	T	2.372e^-4	0.961	INTRON CG42673
3R	2966487	3R_2966487_SNP [dm3] 3R_7140765_SNP [dm6]	T	G	2.372e^-4	0.961	INTRON Fer1	transposable element FlyBase
3L	8023095	3L_8023095_SNP [dm3] 3L_8029995_SNP [dm6]	A	G	2.373e^-4	0.961	INTRON nmo
2L	2743851	2L_2743851_SNP [dm3] 2L_2743851_SNP [dm6]	T	G	2.408e^-4	0.961	SYNONYMOUS_CODING CG9961 UTR_3_PRIME CG9961 DOWNSTREAM Hrs	TF binding site mE1_TFBS_sens
2L	12342333	2L_12342333_SNP [dm3] 2L_12342333_SNP [dm6]	G	A	2.409e^-4	0.961	INTERGENIC
2L	9950539	2L_9950539_SNP [dm3] 2L_9950539_SNP [dm6]	G	C	2.412e^-4	0.961	UPSTREAM mir-87 INTERGENIC
2L	6575816	2L_6575816_SNP [dm3] 2L_6575816_SNP [dm6]	C	T	2.422e^-4	0.961	INTRON CG11319
3L	7707075	3L_7707075_SNP [dm3] 3L_7713975_SNP [dm6]	A	G	2.425e^-4	0.961	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6173900	2L_6173900_SNP [dm3] 2L_6173900_SNP [dm6]	T	A	2.429e^-4	0.961	INTERGENIC
X	10897639	X_10897639_SNP [dm3] X_11003606_SNP [dm6]	G	A	2.432e^-4	0.961	INTRON CG42339
2L	4219297	2L_4219297_SNP [dm3] 2L_4219297_SNP [dm6]	A	G	2.432e^-4	0.961	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	17144947	3L_17144947_SNP [dm3] 3L_17151847_SNP [dm6]	A	G	2.433e^-4	0.961	INTRON Rbp6
2L	20359648	2L_20359648_SNP [dm3] 2L_20359648_SNP [dm6]	G	A	2.436e^-4	0.961	DOWNSTREAM RtGEF INTRON RtGEF
3L	11267901	3L_11267901_INS [dm3] 3L_11274801_INS [dm6]	C	CAAAGTGGTAA...	2.439e^-4	0.961	UPSTREAM CR44720 INTERGENIC
2R	9501865	2R_9501865_INS [dm3] 2R_13614360_INS [dm6]	A	ATGTA	2.439e^-4	0.961	INTERGENIC
2R	9501876	2R_9501876_SNP [dm3] 2R_13614371_SNP [dm6]	C	G	2.439e^-4	0.961	INTERGENIC
2R	17470451	2R_17470451_SNP [dm3] 2R_21582946_SNP [dm6]	C	A	2.445e^-4	0.961	UPSTREAM CG30222 INTERGENIC
4	858728	4_858728_SNP [dm3] 4_838102_SNP [dm6]	C	T	2.452e^-4	0.961	NON_SYNONYMOUS_CODING fd102C	TF binding site mE1_TFBS_sens
2R	15290807	2R_15290807_SNP [dm3] 2R_19403302_SNP [dm6]	A	T	2.457e^-4	0.961	NON_SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	784556	X_784556_SNP [dm3] X_890523_SNP [dm6]	G	A	2.462e^-4	0.961	INTRON CG43867
3R	18715690	3R_18715690_SNP [dm3] 3R_22889968_SNP [dm6]	G	C	2.472e^-4	0.961	INTERGENIC
2R	16066330	2R_16066330_SNP [dm3] 2R_20178825_SNP [dm6]	C	T	2.477e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cnc
2L	16047863	2L_16047863_SNP [dm3] 2L_16047863_SNP [dm6]	A	T	2.479e^-4	0.961	INTRON BicC & 1 other
3R	26611716	3R_26611716_SNP [dm3] 3R_30785994_SNP [dm6]	G	A	2.491e^-4	0.961	INTRON zfh1	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo
3R	11394984	3R_11394984_SNP [dm3] 3R_15569262_SNP [dm6]	A	T	2.493e^-4	0.961	INTERGENIC
3R	23290795	3R_23290795_SNP [dm3] 3R_27465073_SNP [dm6]	C	T	2.495e^-4	0.961	INTRON CG13978	TF binding site mE1_TFBS_HSA
2R	15041881	2R_15041881_SNP [dm3] 2R_19154376_SNP [dm6]	T	C	2.498e^-4	0.961	UPSTREAM ena INTRON ena	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd
2L	20029500	2L_20029500_SNP [dm3] 2L_20029500_SNP [dm6]	A	T	2.499e^-4	0.961	INTRON sNPF
3R	26266431	3R_26266431_SNP [dm3] 3R_30440709_SNP [dm6]	T	C	2.506e^-4	0.961	INTRON CG15537
2L	4442398	2L_4442398_SNP [dm3] 2L_4442398_SNP [dm6]	A	T	2.508e^-4	0.961	UTR_5_PRIME CG15432 UPSTREAM CG15432 & 1 other DOWNSTREAM morgue INTRON CG15432	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA
2R	10368246	2R_10368246_SNP [dm3] 2R_14480741_SNP [dm6]	T	A	2.518e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
3R	24162037	3R_24162037_SNP [dm3] 3R_28336315_SNP [dm6]	C	T	2.528e^-4	0.961	UTR_5_PRIME larp UPSTREAM larp DOWNSTREAM Gfat2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	9736188	3R_9736188_SNP [dm3] 3R_13910466_SNP [dm6]	A	G	2.543e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	20612750	3R_20612750_SNP [dm3] 3R_24787028_SNP [dm6]	G	A	2.549e^-4	0.961	UTR_5_PRIME CG5805 INTRON CG5805	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	11767040	3L_11767040_SNP [dm3] 3L_11773940_SNP [dm6]	T	C	2.558e^-4	0.961	UPSTREAM mir-956 DOWNSTREAM Tim13 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	20334378	2L_20334378_SNP [dm3] 2L_20334378_SNP [dm6]	C	T	2.560e^-4	0.961	INTRON spir
2L	1755415	2L_1755415_INS [dm3] 2L_1755415_INS [dm6]	A	AT	2.562e^-4	0.961	INTRON Gr22f	TF binding site BDTNP1_TFBS_twi
3R	2797641	3R_2797641_SNP [dm3] 3R_6971919_SNP [dm6]	C	A	2.563e^-4	0.961	INTRON Antp
3R	2756738	3R_2756738_SNP [dm3] 3R_6931016_SNP [dm6]	C	T	2.565e^-4	0.961	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
4	526308	4_526308_SNP [dm3] 4_505682_SNP [dm6]	G	A	2.568e^-4	0.961	INTRON zfh2	TF binding site mE1_TFBS_Trl
4	502927	4_502927_SNP [dm3] 4_482301_SNP [dm6]	T	C	2.568e^-4	0.961	UPSTREAM Asator INTRON Asator	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sbb mE1_TFBS_Ubx mE1_TFBS_zfh1
2R	4661225	2R_4661225_SNP [dm3] 2R_8773720_SNP [dm6]	A	T	2.570e^-4	0.961	INTERGENIC
X	12661463	X_12661463_DEL [dm3] X_12767430_DEL [dm6]	TA	T	2.574e^-4	0.961	INTRON CG3812
2R	7824414	2R_7824414_SNP [dm3] 2R_11936909_SNP [dm6]	T	A	2.577e^-4	0.961	INTERGENIC
X	17565317	X_17565317_SNP [dm3] X_17671284_SNP [dm6]	A	G	2.580e^-4	0.961	SYNONYMOUS_CODING CG12990
2L	20249718	2L_20249718_SNP [dm3] 2L_20249718_SNP [dm6]	A	C	2.586e^-4	0.961	DOWNSTREAM CR40341 EXON CR40172
3L	15657917	3L_15657917_SNP [dm3] 3L_15664817_SNP [dm6]	C	T	2.591e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_prd
2L	8769238	2L_8769238_SNP [dm3] 2L_8769238_SNP [dm6]	G	A	2.592e^-4	0.961	SYNONYMOUS_CODING CG9465 UPSTREAM CG9463
3L	3641508	3L_3641508_SNP [dm3] 3L_3641508_SNP [dm6]	T	C	2.604e^-4	0.961	INTRON dar1
3R	22736942	3R_22736942_SNP [dm3] 3R_26911220_SNP [dm6]	C	T	2.609e^-4	0.961	SYNONYMOUS_CODING Ets97D DOWNSTREAM T48	TF binding site mE1_TFBS_cad
3R	9918777	3R_9918777_SNP [dm3] 3R_14093055_SNP [dm6]	A	G	2.619e^-4	0.961	DOWNSTREAM Npc2b INTRON CCHa1
X	18562734	X_18562734_SNP [dm3] X_18668701_SNP [dm6]	A	G	2.623e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	21055532	X_21055532_SNP [dm3] X_21184505_SNP [dm6]	G	C	2.628e^-4	0.961	INTERGENIC
X	3015747	X_3015747_INS [dm3] X_3121714_INS [dm6]	G	ACACTGCTGGCTATA...	2.630e^-4	0.961	INTRON kirre
2R	14596876	2R_14596876_SNP [dm3] 2R_18709371_SNP [dm6]	G	A	2.630e^-4	0.961	SYNONYMOUS_CODING CG15087	TF binding site mE1_TFBS_sens
2L	12104153	2L_12104153_SNP [dm3] 2L_12104153_SNP [dm6]	A	G	2.653e^-4	0.961	UPSTREAM Aats-thr & 1 other INTRON Aats-thr	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	4586991	3L_4586991_SNP [dm3] 3L_4586991_SNP [dm6]	G	A	2.655e^-4	0.961	INTRON CG42540
3L	4586997	3L_4586997_DEL [dm3] 3L_4586997_DEL [dm6]	CT	A	2.655e^-4	0.961	INTRON CG42540
3L	4587043	3L_4587043_DEL [dm3] 3L_4587043_DEL [dm6]	AA	A	2.655e^-4	0.961	INTRON CG42540
3L	4587050	3L_4587050_SNP [dm3] 3L_4587050_SNP [dm6]	G	T	2.655e^-4	0.961	INTRON CG42540
3L	4587052	3L_4587052_SNP [dm3] 3L_4587052_SNP [dm6]	T	A	2.655e^-4	0.961	INTRON CG42540
3L	4587053	3L_4587053_DEL [dm3] 3L_4587053_DEL [dm6]	GCTGTTTCCAACT...	G	2.655e^-4	0.961	INTRON CG42540
3L	4587068	3L_4587068_DEL [dm3] 3L_4587068_DEL [dm6]	ACAAAATTCTAATAAGGT...	A	2.655e^-4	0.961	INTRON CG42540
X	7755632	X_7755632_DEL [dm3] X_7861599_DEL [dm6]	CA	C	2.657e^-4	0.961	INTERGENIC
3R	2348661	3R_2348661_SNP [dm3] 3R_6522939_SNP [dm6]	G	T	2.665e^-4	0.961	INTERGENIC
3R	26761736	3R_26761736_SNP [dm3] 3R_30936014_SNP [dm6]	T	G	2.665e^-4	0.961	UTR_3_PRIME CG15549 DOWNSTREAM CG15550	TF binding site mE1_TFBS_chinmo
3L	8204907	3L_8204907_SNP [dm3] 3L_8211807_SNP [dm6]	T	C	2.667e^-4	0.961	UPSTREAM CG8006 INTERGENIC
3L	18166677	3L_18166677_SNP [dm3] 3L_18173577_SNP [dm6]	A	G	2.667e^-4	0.961	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	7823468	2R_7823468_SNP [dm3] 2R_11935963_SNP [dm6]	T	C	2.667e^-4	0.961	INTERGENIC
2L	20119591	2L_20119591_DEL [dm3] 2L_20119591_DEL [dm6]	AACTCTA	A	2.671e^-4	0.961	INTERGENIC
3R	4022159	3R_4022159_SNP [dm3] 3R_8196437_SNP [dm6]	G	A	2.675e^-4	0.961	DOWNSTREAM CR43302 INTERGENIC
X	18721650	X_18721650_SNP [dm3] X_18827617_SNP [dm6]	C	T	2.675e^-4	0.961	UTR_3_PRIME CG42450 DOWNSTREAM CG42450
3L	14051555	3L_14051555_SNP [dm3] 3L_14058455_SNP [dm6]	G	A	2.677e^-4	0.961	INTRON CG32138
3L	6281480	3L_6281480_SNP [dm3] 3L_6288380_SNP [dm6]	C	G	2.685e^-4	0.961	INTERGENIC
X	2399314	X_2399314_SNP [dm3] X_2505281_SNP [dm6]	A	T	2.696e^-4	0.961	SYNONYMOUS_CODING trol INTRON trol	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	19326868	3L_19326868_SNP [dm3] 3L_19333768_SNP [dm6]	C	T	2.696e^-4	0.961	INTRON pip
3L	18084765	3L_18084765_SNP [dm3] 3L_18091665_SNP [dm6]	A	T	2.699e^-4	0.961	INTRON CG13698
2L	20249694	2L_20249694_SNP [dm3] 2L_20249694_SNP [dm6]	G	A	2.706e^-4	0.961	DOWNSTREAM CR40341 EXON CR40172
X	7755679	X_7755679_SNP [dm3] X_7861646_SNP [dm6]	G	A	2.708e^-4	0.961	INTERGENIC
2L	9590829	2L_9590829_SNP [dm3] 2L_9590829_SNP [dm6]	C	G	2.709e^-4	0.961	NON_SYNONYMOUS_CODING CG3841	regulatory region REDfly_CRMs
2R	10368669	2R_10368669_SNP [dm3] 2R_14481164_SNP [dm6]	G	C	2.710e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13601306	2R_13601306_SNP [dm3] 2R_17713801_SNP [dm6]	A	C	2.711e^-4	0.961	INTRON CG6424
2R	8706037	2R_8706037_SNP [dm3] 2R_12818532_SNP [dm6]	T	C	2.717e^-4	0.961	INTERGENIC
2R	8706045	2R_8706045_SNP [dm3] 2R_12818540_SNP [dm6]	T	G	2.717e^-4	0.961	INTERGENIC
X	12962330	X_12962330_SNP [dm3] X_13068297_SNP [dm6]	A	G	2.720e^-4	0.961	INTRON rad
3R	21875882	3R_21875882_SNP [dm3] 3R_26050160_SNP [dm6]	T	G	2.732e^-4	0.961	DOWNSTREAM gro INTRON Exo84
2L	9849958	2L_9849958_SNP [dm3] 2L_9849958_SNP [dm6]	G	T	2.739e^-4	0.961	INTRON nAChRalpha6
2L	8771841	2L_8771841_SNP [dm3] 2L_8771841_SNP [dm6]	G	A	2.740e^-4	0.961	SYNONYMOUS_CODING CG9465
X	16160500	X_16160500_SNP [dm3] X_16266467_SNP [dm6]	A	C	2.746e^-4	0.961	NON_SYNONYMOUS_CODING CG12507 DOWNSTREAM kat80
3R	3145057	3R_3145057_SNP [dm3] 3R_7319335_SNP [dm6]	T	C	2.747e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11148796	2R_11148796_SNP [dm3] 2R_15261291_SNP [dm6]	A	T	2.766e^-4	0.961	INTRON ItgalphaPS4	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	8769047	2L_8769047_SNP [dm3] 2L_8769047_SNP [dm6]	A	G	2.775e^-4	0.961	UPSTREAM CG9463 DOWNSTREAM CG9465 INTERGENIC
3L	10424915	3L_10424915_SNP [dm3] 3L_10431815_SNP [dm6]	G	A	2.783e^-4	0.961	NON_SYNONYMOUS_CODING Ir67b DOWNSTREAM Ir67c
3L	15511189	3L_15511189_SNP [dm3] 3L_15518089_SNP [dm6]	C	T	2.788e^-4	0.961	INTRON mex1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5554326	3L_5554326_SNP [dm3] 3L_5561226_SNP [dm6]	A	G	2.788e^-4	0.961	SYNONYMOUS_CODING sinu DOWNSTREAM Sucb	TF binding site mE1_TFBS_sens
2L	14080064	2L_14080064_SNP [dm3] 2L_14080064_SNP [dm6]	A	T	2.792e^-4	0.961	INTRON nAChRalpha5
3L	12790411	3L_12790411_DEL [dm3] 3L_12797311_DEL [dm6]	TTTCCC	T	2.808e^-4	0.961	INTRON Atg1
2L	4219500	2L_4219500_SNP [dm3] 2L_4219500_SNP [dm6]	C	T	2.808e^-4	0.961	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4316182	3L_4316182_SNP [dm3] 3L_4316182_SNP [dm6]	A	T	2.811e^-4	0.961	INTRON Claspin
3L	4316186	3L_4316186_INS [dm3] 3L_4316186_INS [dm6]	T	TG	2.811e^-4	0.961	SPLICE_SITE_REGION Claspin INTRON Claspin
2L	10861753	2L_10861753_SNP [dm3] 2L_10861753_SNP [dm6]	A	T	2.812e^-4	0.961	UTR_3_PRIME Stam DOWNSTREAM CR43807	TF binding site mE1_TFBS_cad
3R	3215795	3R_3215795_SNP [dm3] 3R_7390073_SNP [dm6]	T	C	2.816e^-4	0.961	INTERGENIC
3L	19662966	3L_19662966_SNP [dm3] 3L_19669866_SNP [dm6]	A	G	2.822e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2L	6591932	2L_6591932_SNP [dm3] 2L_6591932_SNP [dm6]	C	T	2.825e^-4	0.961	INTRON CG11319
3R	23290797	3R_23290797_SNP [dm3] 3R_27465075_SNP [dm6]	A	T	2.829e^-4	0.961	INTRON CG13978	TF binding site mE1_TFBS_HSA
2L	12200331	2L_12200331_SNP [dm3] 2L_12200331_SNP [dm6]	C	T	2.841e^-4	0.961	UPSTREAM aret INTRON aret
2R	10368165	2R_10368165_SNP [dm3] 2R_14480660_SNP [dm6]	A	C	2.872e^-4	0.961	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2L	2816295	2L_2816295_SNP [dm3] 2L_2816295_SNP [dm6]	A	T	2.874e^-4	0.961	UTR_3_PRIME Duox UPSTREAM CG15400	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	3015753	X_3015753_SNP [dm3] X_3121720_SNP [dm6]	C	A	2.875e^-4	0.961	INTRON kirre
2R	18392529	2R_18392529_INS [dm3] 2R_22505024_INS [dm6]	A	AC	2.875e^-4	0.961	INTRON px	TF binding site BDTNP1_TFBS_twi
2L	19965481	2L_19965481_SNP [dm3] 2L_19965481_SNP [dm6]	T	A	2.885e^-4	0.961	UTR_3_PRIME CG10680 DOWNSTREAM OS9
3R	21858521	3R_21858521_SNP [dm3] 3R_26032799_SNP [dm6]	A	G	2.890e^-4	0.961	UPSTREAM E_spl_m6-BFM INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	12766799	3L_12766799_SNP [dm3] 3L_12773699_SNP [dm6]	C	T	2.893e^-4	0.961	UPSTREAM Hip1 DOWNSTREAM CG32106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12766800	3L_12766800_SNP [dm3] 3L_12773700_SNP [dm6]	G	A	2.893e^-4	0.961	UPSTREAM Hip1 DOWNSTREAM CG32106 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	10043163	2L_10043163_SNP [dm3] 2L_10043163_SNP [dm6]	G	C	2.896e^-4	0.961	INTERGENIC
3R	25553357	3R_25553357_SNP [dm3] 3R_29727635_SNP [dm6]	A	G	2.904e^-4	0.961	INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12696860	3L_12696860_SNP [dm3] 3L_12703760_SNP [dm6]	T	G	2.907e^-4	0.961	INTRON mirr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3402354	2R_3402354_SNP [dm3] 2R_7514849_SNP [dm6]	G	A	2.909e^-4	0.961	SYNONYMOUS_CODING CG1603	TF binding site mE1_TFBS_sens
3R	22588361	3R_22588361_SNP [dm3] 3R_26762639_SNP [dm6]	C	T	2.914e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15259890	3L_15259890_SNP [dm3] 3L_15266790_SNP [dm6]	T	G	2.915e^-4	0.961	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	14199528	2L_14199528_SNP [dm3] 2L_14199528_SNP [dm6]	C	T	2.926e^-4	0.961	INTRON Dyrk2
3L	4587249	3L_4587249_SNP [dm3] 3L_4587249_SNP [dm6]	G	T	2.930e^-4	0.961	INTRON CG42540
2L	1755414	2L_1755414_SNP [dm3] 2L_1755414_SNP [dm6]	A	T	2.933e^-4	0.961	INTRON Gr22f	TF binding site BDTNP1_TFBS_twi
3L	1476943	3L_1476943_SNP [dm3] 3L_1476943_SNP [dm6]	C	T	2.934e^-4	0.961	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
2L	19922198	2L_19922198_SNP [dm3] 2L_19922198_SNP [dm6]	A	C	2.936e^-4	0.961	UPSTREAM CR43827 DOWNSTREAM CR43828 INTRON sick
X	14099572	X_14099572_SNP [dm3] X_14205539_SNP [dm6]	T	C	2.950e^-4	0.961	UTR_3_PRIME l_1_G0469 DOWNSTREAM l_1_G0469 INTRON l_1_G0007 & 1 other
2L	2592629	2L_2592629_SNP [dm3] 2L_2592629_SNP [dm6]	G	A	2.951e^-4	0.961	SYNONYMOUS_CODING CG15394
3L	12759161	3L_12759161_SNP [dm3] 3L_12766061_SNP [dm6]	G	A	2.953e^-4	0.961	SYNONYMOUS_CODING CG32113
2L	9951717	2L_9951717_SNP [dm3] 2L_9951717_SNP [dm6]	G	A	2.967e^-4	0.961	DOWNSTREAM CG13126 INTERGENIC
X	20786018	X_20786018_SNP [dm3] X_20914991_SNP [dm6]	T	G	2.971e^-4	0.961	INTRON shakB
2L	4435525	2L_4435525_SNP [dm3] 2L_4435525_SNP [dm6]	G	T	2.974e^-4	0.961	DOWNSTREAM CG34177 & 1 other INTRON CG15431
3L	20350415	3L_20350415_SNP [dm3] 3L_20357315_SNP [dm6]	C	G	2.975e^-4	0.961	NON_SYNONYMOUS_CODING kin17 DOWNSTREAM CG5618	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	16251739	3L_16251739_DEL [dm3] 3L_16258639_DEL [dm6]	TAAA	G	2.975e^-4	0.961	DOWNSTREAM CG13053 INTERGENIC
2L	8771469	2L_8771469_SNP [dm3] 2L_8771469_SNP [dm6]	A	G	2.997e^-4	0.961	SYNONYMOUS_CODING CG9465
2L	8771793	2L_8771793_SNP [dm3] 2L_8771793_SNP [dm6]	G	T	3.002e^-4	0.961	INTRON CG9465
3R	17812671	3R_17812671_SNP [dm3] 3R_21986949_SNP [dm6]	A	C	3.002e^-4	0.961	INTRON Eip93F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9234733	2L_9234733_SNP [dm3] 2L_9234733_SNP [dm6]	A	G	3.007e^-4	0.961	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	16315428	3R_16315428_SNP [dm3] 3R_20489706_SNP [dm6]	C	A	3.013e^-4	0.961	INTERGENIC
2L	14199861	2L_14199861_SNP [dm3] 2L_14199861_SNP [dm6]	C	T	3.021e^-4	0.961	INTRON Dyrk2
2L	14199871	2L_14199871_SNP [dm3] 2L_14199871_SNP [dm6]	C	T	3.021e^-4	0.961	INTRON Dyrk2
4	525824	4_525824_INS [dm3] 4_505198_INS [dm6]	C	CC	3.023e^-4	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	21644494	3L_21644494_SNP [dm3] 3L_21651394_SNP [dm6]	A	C	3.030e^-4	0.961	INTRON CG43980
2R	20949972	2R_20949972_SNP [dm3] 2R_25062449_SNP [dm6]	A	G	3.036e^-4	0.961	INTRON gsb	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15151347	3L_15151347_SNP [dm3] 3L_15158247_SNP [dm6]	C	T	3.041e^-4	0.961	NON_SYNONYMOUS_CODING Msh6 UPSTREAM Prp31	TF binding site mE1_TFBS_run
3L	3165554	3L_3165554_SNP [dm3] 3L_3165554_SNP [dm6]	C	T	3.041e^-4	0.961	UTR_5_PRIME CG32280 UPSTREAM Asciz INTRON CG32280 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	6607348	3L_6607348_SNP [dm3] 3L_6614248_SNP [dm6]	A	G	3.043e^-4	0.961	INTRON CG8398
3L	1628696	3L_1628696_SNP [dm3] 3L_1628696_SNP [dm6]	C	T	3.044e^-4	0.961	UPSTREAM CG13928 INTRON GC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_Trl
3L	12758326	3L_12758326_SNP [dm3] 3L_12765226_SNP [dm6]	C	T	3.046e^-4	0.961	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_cad
3L	12759105	3L_12759105_SNP [dm3] 3L_12766005_SNP [dm6]	G	C	3.046e^-4	0.961	NON_SYNONYMOUS_CODING CG32113
3L	12759158	3L_12759158_SNP [dm3] 3L_12766058_SNP [dm6]	G	A	3.046e^-4	0.961	SYNONYMOUS_CODING CG32113
3L	12763484	3L_12763484_SNP [dm3] 3L_12770384_SNP [dm6]	G	C	3.046e^-4	0.961	INTRON Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12764845	3L_12764845_SNP [dm3] 3L_12771745_SNP [dm6]	G	C	3.046e^-4	0.961	SYNONYMOUS_CODING Hip1
3L	12766641	3L_12766641_SNP [dm3] 3L_12773541_SNP [dm6]	G	C	3.046e^-4	0.961	UTR_5_PRIME Hip1 UPSTREAM Hip1 DOWNSTREAM CG32106	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12782727	3L_12782727_SNP [dm3] 3L_12789627_SNP [dm6]	G	C	3.046e^-4	0.961	UPSTREAM CG42709 INTRON Atg1	TF binding site mE1_TFBS_cnc mE1_TFBS_Trl
3L	12784898	3L_12784898_SNP [dm3] 3L_12791798_SNP [dm6]	T	G	3.046e^-4	0.961	INTRON Atg1 & 1 other
3L	12784909	3L_12784909_SNP [dm3] 3L_12791809_SNP [dm6]	G	A	3.046e^-4	0.961	INTRON Atg1 & 1 other
3L	18944219	3L_18944219_SNP [dm3] 3L_18951119_SNP [dm6]	G	A	3.049e^-4	0.961	INTRON CG6836
2R	10330413	2R_10330413_SNP [dm3] 2R_14442908_SNP [dm6]	G	A	3.053e^-4	0.961	INTRON Oaz	TF binding site mE1_TFBS_cad
2R	18176523	2R_18176523_SNP [dm3] 2R_22289018_SNP [dm6]	T	A	3.069e^-4	0.961	INTERGENIC	TF binding site mE1_TFBS_cad
3L	4738128	3L_4738128_SNP [dm3] 3L_4738128_SNP [dm6]	A	C	3.070e^-4	0.961	INTRON RhoGEF64C
X	16957842	X_16957842_SNP [dm3] X_17063809_SNP [dm6]	G	A	3.071e^-4	0.961	INTRON CG45002
3L	8281605	3L_8281605_SNP [dm3] 3L_8288505_SNP [dm6]	C	A	3.077e^-4	0.961	INTRON cert
3L	20347974	3L_20347974_SNP [dm3] 3L_20354874_SNP [dm6]	G	T	3.084e^-4	0.961	SYNONYMOUS_CODING CG5618 UTR_5_PRIME CG5618 INTRON CG5618
3L	9964550	3L_9964550_SNP [dm3] 3L_9971450_SNP [dm6]	C	T	3.087e^-4	0.961	SYNONYMOUS_CODING CG6674 UPSTREAM vnc & 1 other DOWNSTREAM Nc	TF binding site BDTNP1_TFBS_dl
3R	10250688	3R_10250688_SNP [dm3] 3R_14424966_SNP [dm6]	G	T	3.090e^-4	0.961	INTRON cv-c
3L	6927719	3L_6927719_SNP [dm3] 3L_6934619_SNP [dm6]	C	T	3.097e^-4	0.961	SYNONYMOUS_CODING CG14820 DOWNSTREAM CR45415
3R	10765237	3R_10765237_SNP [dm3] 3R_14939515_SNP [dm6]	G	A	3.098e^-4	0.961	INTERGENIC
2R	18744744	2R_18744744_SNP [dm3] 2R_22857221_SNP [dm6]	T	C	3.101e^-4	0.961	SYNONYMOUS_CODING inaD	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	13879469	2L_13879469_SNP [dm3] 2L_13879469_SNP [dm6]	A	G	3.102e^-4	0.961	UTR_5_PRIME CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	13399456	3L_13399456_SNP [dm3] 3L_13406356_SNP [dm6]	C	G	3.109e^-4	0.961	INTERGENIC
2R	10368830	2R_10368830_SNP [dm3] 2R_14481325_SNP [dm6]	T	A	3.109e^-4	0.961	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	16458341	2L_16458341_SNP [dm3] 2L_16458341_SNP [dm6]	G	T	3.113e^-4	0.961	INTERGENIC	regulatory region REDfly_CRMs
2R	10323999	2R_10323999_SNP [dm3] 2R_14436494_SNP [dm6]	T	C	3.117e^-4	0.961	INTRON Oaz	TF binding site mE1_TFBS_cad
X	14626575	X_14626575_SNP [dm3] X_14732542_SNP [dm6]	C	A	3.129e^-4	0.961	INTRON NetB	TF binding site mE1_TFBS_chinmo
3L	8588112	3L_8588112_SNP [dm3] 3L_8595012_SNP [dm6]	A	G	3.138e^-4	0.961	SYNONYMOUS_CODING CG43078 UTR_3_PRIME CG43078	TF binding site mE1_TFBS_chinmo
3R	13243594	3R_13243594_SNP [dm3] 3R_17417872_SNP [dm6]	T	C	3.138e^-4	0.961	NON_SYNONYMOUS_CODING CG33333 UPSTREAM CG42834	TF binding site mE1_TFBS_cad
3L	12761786	3L_12761786_SNP [dm3] 3L_12768686_SNP [dm6]	T	A	3.139e^-4	0.961	UTR_3_PRIME Hip1 DOWNSTREAM CG32113
2L	1755430	2L_1755430_SNP [dm3] 2L_1755430_SNP [dm6]	T	G	3.139e^-4	0.961	INTRON Gr22f	TF binding site BDTNP1_TFBS_twi
2L	1755432	2L_1755432_SNP [dm3] 2L_1755432_SNP [dm6]	C	T	3.139e^-4	0.961	INTRON Gr22f	TF binding site BDTNP1_TFBS_twi
2L	19482323	2L_19482323_SNP [dm3] 2L_19482323_SNP [dm6]	C	T	3.140e^-4	0.961	UTR_3_PRIME CG10195 DOWNSTREAM CG10195
3L	19309880	3L_19309880_DEL [dm3] 3L_19316780_DEL [dm6]	ATCTTGCTT	A	3.151e^-4	0.961	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10368962	2R_10368962_SNP [dm3] 2R_14481457_SNP [dm6]	T	A	3.152e^-4	0.961	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12238707	2R_12238707_SNP [dm3] 2R_16351202_SNP [dm6]	C	T	3.156e^-4	0.961	INTERGENIC
2L	19967459	2L_19967459_SNP [dm3] 2L_19967459_SNP [dm6]	T	C	3.164e^-4	0.961	NON_SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	14568146	2L_14568146_SNP [dm3] 2L_14568146_SNP [dm6]	G	C	3.167e^-4	0.961	INTERGENIC
2L	12129356	2L_12129356_SNP [dm3] 2L_12129356_SNP [dm6]	G	A	3.180e^-4	0.961	SYNONYMOUS_CODING CG17211	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	538877	4_538877_SNP [dm3] 4_518251_SNP [dm6]	G	C	3.186e^-4	0.961	INTRON zfh2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13376112	3L_13376112_SNP [dm3] 3L_13383012_SNP [dm6]	A	G	3.192e^-4	0.961	NON_SYNONYMOUS_CODING ImpL1	TF binding site mE1_TFBS_cad
3L	1476937	3L_1476937_SNP [dm3] 3L_1476937_SNP [dm6]	G	C	3.192e^-4	0.961	SYNONYMOUS_CODING stet UPSTREAM robl62A	TF binding site mE1_TFBS_sens
3L	12501133	3L_12501133_SNP [dm3] 3L_12508033_SNP [dm6]	C	T	3.207e^-4	0.961	UTR_3_PRIME sti UPSTREAM CG10654
X	20786030	X_20786030_SNP [dm3] X_20915003_SNP [dm6]	T	G	3.208e^-4	0.961	INTRON shakB
3L	3291604	3L_3291604_INS [dm3] 3L_3291604_INS [dm6]	T	TGGGAGT	3.210e^-4	0.961	UTR_5_PRIME CG12009 DOWNSTREAM CG12017
3L	12760171	3L_12760171_SNP [dm3] 3L_12767071_SNP [dm6]	C	T	3.212e^-4	0.961	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	8774436	3R_8774436_SNP [dm3] 3R_12948714_SNP [dm6]	C	G	3.217e^-4	0.961	INTERGENIC
X	14353181	X_14353181_SNP [dm3] X_14459148_SNP [dm6]	T	C	3.223e^-4	0.961	INTRON dpr8
X	14353182	X_14353182_SNP [dm3] X_14459149_SNP [dm6]	C	T	3.223e^-4	0.961	INTRON dpr8
X	14353233	X_14353233_SNP [dm3] X_14459200_SNP [dm6]	T	C	3.223e^-4	0.961	SYNONYMOUS_CODING dpr8
2L	1290006	2L_1290006_SNP [dm3] 2L_1290006_SNP [dm6]	C	G	3.230e^-4	0.961	INTRON robo3
3R	13246110	3R_13246110_SNP [dm3] 3R_17420388_SNP [dm6]	A	T	3.240e^-4	0.961	UPSTREAM CG42835 INTERGENIC
3R	4005513	3R_4005513_SNP [dm3] 3R_8179791_SNP [dm6]	T	A	3.243e^-4	0.961	UTR_5_PRIME grn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad
2L	3316080	2L_3316080_SNP [dm3] 2L_3316080_SNP [dm6]	G	A	3.251e^-4	0.961	NON_SYNONYMOUS_CODING CG3277 DOWNSTREAM CG3326
2R	20042594	2R_20042594_SNP [dm3] 2R_24155071_SNP [dm6]	T	C	3.257e^-4	0.961	INTRON Dat
2L	9950535	2L_9950535_SNP [dm3] 2L_9950535_SNP [dm6]	C	T	3.257e^-4	0.961	UPSTREAM mir-87 INTERGENIC
2R	14792873	2R_14792873_SNP [dm3] 2R_18905368_SNP [dm6]	G	A	3.258e^-4	0.961	INTRON sano
4	542262	4_542262_SNP [dm3] 4_521636_SNP [dm6]	A	T	3.262e^-4	0.961	NON_SYNONYMOUS_CODING zfh2
3L	6130144	3L_6130144_SNP [dm3] 3L_6137044_SNP [dm6]	G	A	3.266e^-4	0.961	UPSTREAM Lcp65Af DOWNSTREAM Lcp65Ae INTERGENIC
3L	12105225	3L_12105225_SNP [dm3] 3L_12112125_SNP [dm6]	G	A	3.267e^-4	0.961	INTERGENIC
X	13642248	X_13642248_SNP [dm3] X_13748215_SNP [dm6]	A	T	3.288e^-4	0.961	INTRON Pdcd4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12103574	2L_12103574_SNP [dm3] 2L_12103574_SNP [dm6]	A	C	3.289e^-4	0.961	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	6025149	2L_6025149_SNP [dm3] 2L_6025149_SNP [dm6]	A	G	3.293e^-4	0.961	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
3L	3908535	3L_3908535_SNP [dm3] 3L_3908535_SNP [dm6]	T	G	3.298e^-4	0.961	DOWNSTREAM ida INTRON mge
X	12327550	X_12327550_SNP [dm3] X_12433517_SNP [dm6]	T	A	3.305e^-4	0.961	INTRON Pkcdelta
3L	677592	3L_677592_SNP [dm3] 3L_677592_SNP [dm6]	C	A	3.305e^-4	0.961	DOWNSTREAM CG17129 INTERGENIC
2L	138351	2L_138351_SNP [dm3] 2L_138351_SNP [dm6]	C	A	3.309e^-4	0.961	DOWNSTREAM CG31976 & 1 other INTRON CG11455
2L	282652	2L_282652_SNP [dm3] 2L_282652_SNP [dm6]	G	T	3.309e^-4	0.961	SPLICE_SITE_DONOR CG11601 DOWNSTREAM smo & 1 other INTRON CG11601	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	300821	2L_300821_SNP [dm3] 2L_300821_SNP [dm6]	G	A	3.309e^-4	0.961	UPSTREAM Pi3K21B INTRON Pi3K21B
2L	309316	2L_309316_SNP [dm3] 2L_309316_SNP [dm6]	C	T	3.309e^-4	0.961	UPSTREAM Plc21C INTRON Plc21C EXON CR43719
3L	14837412	3L_14837412_DEL [dm3] 3L_14844312_DEL [dm6]	GCAGGCTAAATCAATATCGA...	T	3.309e^-4	0.961	INTRON CG17839
3L	12105207	3L_12105207_SNP [dm3] 3L_12112107_SNP [dm6]	C	A	3.324e^-4	0.961	INTERGENIC
2L	20143408	2L_20143408_DEL [dm3] 2L_20143408_DEL [dm6]	GCGGAGGCGAG...	G	3.324e^-4	0.961	INTERGENIC
2L	5931121	2L_5931121_SNP [dm3] 2L_5931121_SNP [dm6]	G	A	3.331e^-4	0.961	INTRON dsf
X	775552	X_775552_SNP [dm3] X_881519_SNP [dm6]	A	C	3.335e^-4	0.961	SYNONYMOUS_CODING CG43867 INTRON CG43867	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1960236	3L_1960236_SNP [dm3] 3L_1960236_SNP [dm6]	C	G	3.341e^-4	0.961	SYNONYMOUS_CODING mv
X	16579895	X_16579895_SNP [dm3] X_16685862_SNP [dm6]	C	A	3.346e^-4	0.961	SYNONYMOUS_CODING Sep4
3R	17337600	3R_17337600_SNP [dm3] 3R_21511878_SNP [dm6]	T	A	3.347e^-4	0.961	INTRON C15
2R	14491720	2R_14491720_SNP [dm3] 2R_18604215_SNP [dm6]	C	G	3.349e^-4	0.961	INTRON GEFmeso	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	1960218	3L_1960218_SNP [dm3] 3L_1960218_SNP [dm6]	C	T	3.356e^-4	0.961	SYNONYMOUS_CODING mv
2L	8091231	2L_8091231_SNP [dm3] 2L_8091231_SNP [dm6]	T	C	3.356e^-4	0.961	INTRON Bsg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi
X	7755694	X_7755694_SNP [dm3] X_7861661_SNP [dm6]	C	A	3.364e^-4	0.961	INTERGENIC
3R	10330803	3R_10330803_SNP [dm3] 3R_14505081_SNP [dm6]	C	G	3.365e^-4	0.961	INTRON CR44177	TF binding site mE1_TFBS_cad
3L	12763453	3L_12763453_SNP [dm3] 3L_12770353_SNP [dm6]	G	A	3.375e^-4	0.961	INTRON Hip1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	12362132	X_12362132_SNP [dm3] X_12468099_SNP [dm6]	A	C	3.377e^-4	0.961	INTRON CG42258	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17997179	2R_17997179_SNP [dm3] 2R_22109674_SNP [dm6]	G	T	3.378e^-4	0.961	SYNONYMOUS_CODING Vrp1	TF binding site mE1_TFBS_cad
3R	3221643	3R_3221643_SNP [dm3] 3R_7395921_SNP [dm6]	G	A	3.382e^-4	0.961	INTERGENIC
2R	3980364	2R_3980364_SNP [dm3] 2R_8092859_SNP [dm6]	G	A	3.384e^-4	0.961	INTRON CG8713
3R	3181847	3R_3181847_SNP [dm3] 3R_7356125_SNP [dm6]	T	A	3.399e^-4	0.961	INTERGENIC
2R	9662210	2R_9662210_SNP [dm3] 2R_13774705_SNP [dm6]	G	A	3.399e^-4	0.961	SYNONYMOUS_CODING Cpr50Ca	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11267894	3L_11267894_DEL [dm3] 3L_11274794_DEL [dm6]	TC	T	3.403e^-4	0.961	UPSTREAM CR44720 INTERGENIC
3R	23891780	3R_23891780_SNP [dm3] 3R_28066058_SNP [dm6]	C	T	3.404e^-4	0.961	INTRON CG34362
3R	8481797	3R_8481797_SNP [dm3] 3R_12656075_SNP [dm6]	T	C	3.412e^-4	0.962	INTRON CG6225
3L	4587029	3L_4587029_SNP [dm3] 3L_4587029_SNP [dm6]	T	C	3.421e^-4	0.962	INTRON CG42540
3L	12765857	3L_12765857_SNP [dm3] 3L_12772757_SNP [dm6]	A	T	3.428e^-4	0.962	UTR_5_PRIME Hip1 INTRON Hip1
3R	27802412	3R_27802412_SNP [dm3] 3R_31976690_SNP [dm6]	C	A	3.430e^-4	0.962	INTRON heph	TF binding site BDTNP1_TFBS_twi
3L	8706202	3L_8706202_SNP [dm3] 3L_8713102_SNP [dm6]	A	G	3.432e^-4	0.962	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15291008	2R_15291008_SNP [dm3] 2R_19403503_SNP [dm6]	C	T	3.438e^-4	0.962	SYNONYMOUS_CODING hts INTRON hts	TF binding site mE1_TFBS_cad
3L	16896785	3L_16896785_SNP [dm3] 3L_16903685_SNP [dm6]	G	A	3.456e^-4	0.962	SYNONYMOUS_CODING Lmpt INTRON Lmpt
3R	8774397	3R_8774397_SNP [dm3] 3R_12948675_SNP [dm6]	G	A	3.458e^-4	0.962	INTERGENIC
3R	5116552	3R_5116552_SNP [dm3] 3R_9290830_SNP [dm6]	A	G	3.462e^-4	0.962	INTERGENIC
2L	3311942	2L_3311942_SNP [dm3] 2L_3311942_SNP [dm6]	G	T	3.469e^-4	0.962	DOWNSTREAM CG15406 INTRON CG3277
2L	14049818	2L_14049818_SNP [dm3] 2L_14049818_SNP [dm6]	A	G	3.471e^-4	0.962	DOWNSTREAM NimC4 INTRON nAChRalpha5	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12767706	3L_12767706_SNP [dm3] 3L_12774606_SNP [dm6]	C	T	3.475e^-4	0.962	SYNONYMOUS_CODING CG32106	TF binding site mE1_TFBS_sens
3L	2177299	3L_2177299_INS [dm3] 3L_2177299_INS [dm6]	T	TATT	3.481e^-4	0.962	INTERGENIC
3L	4315104	3L_4315104_SNP [dm3] 3L_4315104_SNP [dm6]	T	G	3.482e^-4	0.962	SYNONYMOUS_CODING Claspin
2R	15451427	2R_15451427_DEL [dm3] 2R_19563922_DEL [dm6]	TT	T	3.487e^-4	0.962	DOWNSTREAM tRNA:CR33535 INTRON sm
2L	2937559	2L_2937559_SNP [dm3] 2L_2937559_SNP [dm6]	C	T	3.501e^-4	0.962	INTRON lilli
2L	14068727	2L_14068727_INS [dm3] 2L_14068727_INS [dm6]	A	AGT	3.503e^-4	0.962	INTRON nAChRalpha5
3L	8281593	3L_8281593_DEL [dm3] 3L_8288493_DEL [dm6]	TGAGTCAA	T	3.504e^-4	0.962	INTRON cert
2L	3488195	2L_3488195_SNP [dm3] 2L_3488195_SNP [dm6]	C	T	3.511e^-4	0.962	INTRON CG15414
3L	19652904	3L_19652904_SNP [dm3] 3L_19659804_SNP [dm6]	T	C	3.512e^-4	0.962	INTRON tey
2R	4074279	2R_4074279_INS [dm3] 2R_8186774_INS [dm6]	A	TT	3.521e^-4	0.963	INTRON LRP1
2R	9089138	2R_9089138_SNP [dm3] 2R_13201633_SNP [dm6]	C	T	3.533e^-4	0.965	SYNONYMOUS_CODING Aats-val	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	6748903	X_6748903_SNP [dm3] X_6854870_SNP [dm6]	T	C	3.552e^-4	0.965	INTRON CG14434	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9839913	2R_9839913_SNP [dm3] 2R_13952408_SNP [dm6]	A	G	3.552e^-4	0.965	INTRON AGO1	TF binding site BDTNP1_TFBS_dl
2L	8308300	2L_8308300_SNP [dm3] 2L_8308300_SNP [dm6]	A	T	3.555e^-4	0.965	UPSTREAM CG7818 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	12502334	2L_12502334_SNP [dm3] 2L_12502334_SNP [dm6]	C	T	3.557e^-4	0.965	INTRON bun	TF binding site mE1_TFBS_inv
2R	13958967	2R_13958967_SNP [dm3] 2R_18071462_SNP [dm6]	A	T	3.565e^-4	0.965	INTRON CG34386
3L	6281327	3L_6281327_SNP [dm3] 3L_6288227_SNP [dm6]	C	A	3.568e^-4	0.965	INTERGENIC
2R	6638744	2R_6638744_SNP [dm3] 2R_10751239_SNP [dm6]	G	A	3.569e^-4	0.965	INTRON CG33144
3R	24778296	3R_24778296_DEL [dm3] 3R_28952574_DEL [dm6]	TG	T	3.602e^-4	0.967	INTRON CG14521
2L	6025151	2L_6025151_SNP [dm3] 2L_6025151_SNP [dm6]	C	T	3.606e^-4	0.967	UPSTREAM CG9107 DOWNSTREAM CG9109 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_run
2L	12103504	2L_12103504_SNP [dm3] 2L_12103504_SNP [dm6]	A	T	3.620e^-4	0.967	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18383022	3L_18383022_SNP [dm3] 3L_18389922_SNP [dm6]	G	C	3.625e^-4	0.967	INTERGENIC
2L	20349306	2L_20349306_SNP [dm3] 2L_20349306_SNP [dm6]	C	T	3.630e^-4	0.967	NON_SYNONYMOUS_CODING La DOWNSTREAM spir	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26600770	3R_26600770_SNP [dm3] 3R_30775048_SNP [dm6]	G	A	3.632e^-4	0.967	INTRON zfh1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	3107027	2R_3107027_SNP [dm3] 2R_7219522_SNP [dm6]	G	A	3.639e^-4	0.967	INTRON pk
2L	5478730	2L_5478730_SNP [dm3] 2L_5478730_SNP [dm6]	A	G	3.642e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5725369	3L_5725369_SNP [dm3] 3L_5732269_SNP [dm6]	G	C	3.652e^-4	0.967	INTRON sif
2L	390139	2L_390139_SNP [dm3] 2L_390139_SNP [dm6]	G	A	3.657e^-4	0.967	INTERGENIC
3L	15449617	3L_15449617_SNP [dm3] 3L_15456517_SNP [dm6]	T	A	3.657e^-4	0.967	UPSTREAM CR45395 INTERGENIC
2L	17858284	2L_17858284_SNP [dm3] 2L_17858284_SNP [dm6]	C	G	3.681e^-4	0.967	INTRON CadN2
X	2761419	X_2761419_SNP [dm3] X_2867386_SNP [dm6]	T	A	3.681e^-4	0.967	INTRON kirre	TF binding site mE1_TFBS_inv
3R	2966485	3R_2966485_SNP [dm3] 3R_7140763_SNP [dm6]	T	C	3.694e^-4	0.967	INTRON Fer1	transposable element FlyBase
2L	14014336	2L_14014336_SNP [dm3] 2L_14014336_SNP [dm6]	C	A	3.695e^-4	0.967	INTRON bgm	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	5804878	2L_5804878_SNP [dm3] 2L_5804878_SNP [dm6]	G	T	3.703e^-4	0.967	UPSTREAM CG11034 DOWNSTREAM CG7239 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
X	15996142	X_15996142_SNP [dm3] X_16102109_SNP [dm6]	C	T	3.704e^-4	0.967	INTRON CG42354 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14837410	3L_14837410_SNP [dm3] 3L_14844310_SNP [dm6]	A	G	3.705e^-4	0.967	INTRON CG17839
2R	9696285	2R_9696285_SNP [dm3] 2R_13808780_SNP [dm6]	A	T	3.737e^-4	0.967	INTRON stj
2L	12632317	2L_12632317_SNP [dm3] 2L_12632317_SNP [dm6]	T	G	3.740e^-4	0.967	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	8655734	2L_8655734_SNP [dm3] 2L_8655734_SNP [dm6]	T	C	3.746e^-4	0.967	SYNONYMOUS_CODING Sema-1a
X	7755673	X_7755673_SNP [dm3] X_7861640_SNP [dm6]	T	C	3.754e^-4	0.967	INTERGENIC
2L	22023241	2L_22023241_SNP [dm3] 2L_22023241_SNP [dm6]	A	C	3.758e^-4	0.967	INTRON tio	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	23424238	3R_23424238_SNP [dm3] 3R_27598516_SNP [dm6]	G	A	3.758e^-4	0.967	UTR_3_PRIME dsd
3R	26401883	3R_26401883_SNP [dm3] 3R_30576161_SNP [dm6]	C	A	3.761e^-4	0.967	UTR_3_PRIME tmod INTRON tmod
4	535162	4_535162_SNP [dm3] 4_514536_SNP [dm6]	T	C	3.771e^-4	0.967	INTRON zfh2
2L	2166595	2L_2166595_SNP [dm3] 2L_2166595_SNP [dm6]	G	A	3.776e^-4	0.967	INTRON aop	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_sens
2L	14202885	2L_14202885_SNP [dm3] 2L_14202885_SNP [dm6]	G	C	3.784e^-4	0.967	INTRON Dyrk2
2R	15745231	2R_15745231_SNP [dm3] 2R_19857726_SNP [dm6]	C	T	3.786e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9253940	2R_9253940_SNP [dm3] 2R_13366435_SNP [dm6]	T	G	3.797e^-4	0.967	INTERGENIC
2L	912300	2L_912300_SNP [dm3] 2L_912300_SNP [dm6]	C	T	3.804e^-4	0.967	DOWNSTREAM CR44061 INTERGENIC
3L	11767029	3L_11767029_DEL [dm3] 3L_11773929_DEL [dm6]	AGCACCCTCA	A	3.807e^-4	0.967	UPSTREAM mir-956 DOWNSTREAM Tim13 & 2 others INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	23290831	3R_23290831_SNP [dm3] 3R_27465109_SNP [dm6]	C	T	3.813e^-4	0.967	NON_SYNONYMOUS_CODING CG13978	TF binding site mE1_TFBS_HSA
2L	11103726	2L_11103726_SNP [dm3] 2L_11103726_SNP [dm6]	G	A	3.817e^-4	0.967	INTRON Reps
2R	18794122	2R_18794122_SNP [dm3] 2R_22906599_SNP [dm6]	T	C	3.834e^-4	0.967	INTRON nahoda
2R	3980362	2R_3980362_SNP [dm3] 2R_8092857_SNP [dm6]	G	A	3.841e^-4	0.967	INTRON CG8713
2R	19201112	2R_19201112_SNP [dm3] 2R_23313589_SNP [dm6]	C	T	3.848e^-4	0.967	INTRON HP1Lcsd	TF binding site BDTNP1_TFBS_twi
3L	11466397	3L_11466397_SNP [dm3] 3L_11473297_SNP [dm6]	A	T	3.855e^-4	0.967	UTR_5_PRIME Vha16-3 UPSTREAM Vha16-3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20264996	3R_20264996_SNP [dm3] 3R_24439274_SNP [dm6]	G	A	3.867e^-4	0.967	UPSTREAM CR43455 INTRON nAChRalpha1
3R	19149531	3R_19149531_SNP [dm3] 3R_23323809_SNP [dm6]	C	T	3.868e^-4	0.967	INTRON pnt
2L	22059619	2L_22059619_SNP [dm3] 2L_22059619_SNP [dm6]	A	T	3.872e^-4	0.967	INTERGENIC
2L	15412785	2L_15412785_SNP [dm3] 2L_15412785_SNP [dm6]	T	C	3.874e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	19335275	3L_19335275_SNP [dm3] 3L_19342175_SNP [dm6]	C	T	3.874e^-4	0.967	UTR_3_PRIME CG32206
2R	17110499	2R_17110499_SNP [dm3] 2R_21222994_SNP [dm6]	T	A	3.880e^-4	0.967	INTRON ASPP
2L	8082188	2L_8082188_SNP [dm3] 2L_8082188_SNP [dm6]	T	A	3.883e^-4	0.967	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2L	8082190	2L_8082190_SNP [dm3] 2L_8082190_SNP [dm6]	T	A	3.883e^-4	0.967	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3L	13396380	3L_13396380_SNP [dm3] 3L_13403280_SNP [dm6]	A	G	3.890e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1072612	3L_1072612_SNP [dm3] 3L_1072612_SNP [dm6]	T	A	3.890e^-4	0.967	INTRON bab1
2L	1730250	2L_1730250_SNP [dm3] 2L_1730250_SNP [dm6]	A	G	3.895e^-4	0.967	SYNONYMOUS_CODING CG31937 UPSTREAM Eno DOWNSTREAM Rrp40 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18314735	3L_18314735_DEL [dm3] 3L_18321635_DEL [dm6]	AC	A	3.895e^-4	0.967	INTERGENIC
2R	3110507	2R_3110507_SNP [dm3] 2R_7223002_SNP [dm6]	C	G	3.896e^-4	0.967	UTR_3_PRIME pk	TF binding site mE1_TFBS_chinmo
2L	20053143	2L_20053143_SNP [dm3] 2L_20053143_SNP [dm6]	A	G	3.898e^-4	0.967	INTRON sNPF
2L	12368143	2L_12368143_SNP [dm3] 2L_12368143_SNP [dm6]	C	T	3.906e^-4	0.967	INTRON bru-2
X	3779576	X_3779576_INS [dm3] X_3885543_INS [dm6]	T	TCTTGCT	3.910e^-4	0.967	INTRON CG15239
3R	26400638	3R_26400638_DEL [dm3] 3R_30574916_DEL [dm6]	TT	T	3.911e^-4	0.967	UTR_3_PRIME tmod INTRON tmod
2R	1839956	2R_1839956_SNP [dm3] 2R_5952451_SNP [dm6]	A	T	3.912e^-4	0.967	INTERGENIC
2L	6700087	2L_6700087_SNP [dm3] 2L_6700087_SNP [dm6]	G	A	3.919e^-4	0.967	SYNONYMOUS_CODING Tsp	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	10713528	2L_10713528_SNP [dm3] 2L_10713528_SNP [dm6]	C	T	3.921e^-4	0.967	INTERGENIC
4	468889	4_468889_SNP [dm3] 4_448263_SNP [dm6]	T	A	3.929e^-4	0.967	INTRON CaMKI
3R	26993243	3R_26993243_SNP [dm3] 3R_31167521_SNP [dm6]	A	C	3.931e^-4	0.967	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
3R	26993258	3R_26993258_SNP [dm3] 3R_31167536_SNP [dm6]	G	C	3.931e^-4	0.967	INTRON Gycbeta100B & 1 other	TF binding site mE1_TFBS_inv
2R	6579804	2R_6579804_SNP [dm3] 2R_10692299_SNP [dm6]	G	A	3.937e^-4	0.967	INTRON stan	enhancer mE1_CBP_Enhancers
2R	17247796	2R_17247796_SNP [dm3] 2R_21360291_SNP [dm6]	G	T	3.940e^-4	0.967	INTRON cv-2	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	9253932	2R_9253932_SNP [dm3] 2R_13366427_SNP [dm6]	C	G	3.950e^-4	0.967	INTERGENIC
3R	9311228	3R_9311228_SNP [dm3] 3R_13485506_SNP [dm6]	C	A	3.952e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	14335284	3L_14335284_DEL [dm3] 3L_14342184_DEL [dm6]	TCAAAGGAGTCCCC...	T	3.952e^-4	0.967	INTRON fz
3R	3139079	3R_3139079_SNP [dm3] 3R_7313357_SNP [dm6]	C	T	3.964e^-4	0.967	UPSTREAM CR44334 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	18166895	3L_18166895_SNP [dm3] 3L_18173795_SNP [dm6]	T	A	3.965e^-4	0.967	INTRON W	TF binding site BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12338404	3R_12338404_SNP [dm3] 3R_16512682_SNP [dm6]	T	C	3.967e^-4	0.967	INTRON CG42342	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
3R	10371877	3R_10371877_SNP [dm3] 3R_14546155_SNP [dm6]	G	C	3.967e^-4	0.967	INTRON Pde6
3R	23861505	3R_23861505_SNP [dm3] 3R_28035783_SNP [dm6]	G	T	3.969e^-4	0.967	INTRON CG34362
3R	10192555	3R_10192555_SNP [dm3] 3R_14366833_SNP [dm6]	A	G	3.976e^-4	0.967	INTRON NK7.1
X	20786103	X_20786103_SNP [dm3] X_20915076_SNP [dm6]	T	G	3.977e^-4	0.967	INTRON shakB
2R	7551219	2R_7551219_SNP [dm3] 2R_11663714_SNP [dm6]	T	G	3.979e^-4	0.967	INTRON Roc2	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	26698645	3R_26698645_SNP [dm3] 3R_30872923_SNP [dm6]	G	C	3.990e^-4	0.967	UPSTREAM CG15545 INTERGENIC
2L	19931319	2L_19931319_SNP [dm3] 2L_19931319_SNP [dm6]	T	C	3.993e^-4	0.967	INTRON sick
2L	12187032	2L_12187032_SNP [dm3] 2L_12187032_SNP [dm6]	A	T	4.019e^-4	0.967	INTRON aret	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17241669	X_17241669_SNP [dm3] X_17347636_SNP [dm6]	G	A	4.024e^-4	0.967	INTERGENIC
2L	20235429	2L_20235429_SNP [dm3] 2L_20235429_SNP [dm6]	T	A	4.031e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9414277	3L_9414277_DEL [dm3] 3L_9421177_DEL [dm6]	CTATGAGAAGC...	G	4.040e^-4	0.967	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22618351	3R_22618351_SNP [dm3] 3R_26792629_SNP [dm6]	C	A	4.051e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8825316	2L_8825316_SNP [dm3] 2L_8825316_SNP [dm6]	A	C	4.054e^-4	0.967	UPSTREAM SoxN INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	13773042	3R_13773042_SNP [dm3] 3R_17947320_SNP [dm6]	G	A	4.057e^-4	0.967	UTR_5_PRIME cpo INTRON cpo
3L	10647760	3L_10647760_SNP [dm3] 3L_10654660_SNP [dm6]	A	G	4.062e^-4	0.967	INTRON CG32066	TF binding site BDTNP1_TFBS_twi
2L	9812309	2L_9812309_SNP [dm3] 2L_9812309_SNP [dm6]	A	G	4.075e^-4	0.967	INTRON nAChRalpha6
3L	19343676	3L_19343676_SNP [dm3] 3L_19350576_SNP [dm6]	G	T	4.078e^-4	0.967	SYNONYMOUS_CODING CG32206	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6326543	3R_6326543_DEL [dm3] 3R_10500821_DEL [dm6]	GG	G	4.078e^-4	0.967	INTERGENIC
3L	13163072	3L_13163072_SNP [dm3] 3L_13169972_SNP [dm6]	T	A	4.080e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Kr
3R	21875872	3R_21875872_SNP [dm3] 3R_26050150_SNP [dm6]	T	A	4.088e^-4	0.967	DOWNSTREAM gro INTRON Exo84
2R	15768682	2R_15768682_SNP [dm3] 2R_19881177_SNP [dm6]	T	G	4.092e^-4	0.967	UPSTREAM CG13872 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3L	12479206	3L_12479206_SNP [dm3] 3L_12486106_SNP [dm6]	C	A	4.093e^-4	0.967	NON_SYNONYMOUS_CODING CG33725 DOWNSTREAM CG10660	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4022134	3R_4022134_SNP [dm3] 3R_8196412_SNP [dm6]	C	A	4.097e^-4	0.967	DOWNSTREAM CR43302 INTERGENIC
2L	4002792	2L_4002792_SNP [dm3] 2L_4002792_SNP [dm6]	A	C	4.098e^-4	0.967	INTERGENIC
3L	9979060	3L_9979060_DEL [dm3] 3L_9985960_DEL [dm6]	AA	A	4.103e^-4	0.967	INTRON dpr6
X	16633276	X_16633276_DEL [dm3] X_16739243_DEL [dm6]	AAA	A	4.113e^-4	0.967	DOWNSTREAM TwdlZ INTRON CG9634
X	12362318	X_12362318_SNP [dm3] X_12468285_SNP [dm6]	C	T	4.114e^-4	0.967	INTRON CG42258	TF binding site mE1_TFBS_HSA
3R	13870210	3R_13870210_SNP [dm3] 3R_18044488_SNP [dm6]	C	A	4.123e^-4	0.967	DOWNSTREAM htl INTERGENIC
2L	14198127	2L_14198127_SNP [dm3] 2L_14198127_SNP [dm6]	G	A	4.131e^-4	0.967	UPSTREAM Dyrk2 INTRON Dyrk2
2R	18573438	2R_18573438_DEL [dm3] 2R_22685933_DEL [dm6]	TATT	T	4.134e^-4	0.967	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4944605	2L_4944605_SNP [dm3] 2L_4944605_SNP [dm6]	G	A	4.148e^-4	0.967	SYNONYMOUS_CODING mRpL24 UPSTREAM betaggt-I DOWNSTREAM CG14044	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20970469	2R_20970469_SNP [dm3] 2R_25082946_SNP [dm6]	C	A	4.158e^-4	0.967	INTRON gol	TF binding site mE1_TFBS_Kr
3L	9184601	3L_9184601_SNP [dm3] 3L_9191501_SNP [dm6]	A	G	4.164e^-4	0.967	INTERGENIC
2L	305149	2L_305149_SNP [dm3] 2L_305149_SNP [dm6]	A	G	4.171e^-4	0.967	UTR_3_PRIME Pi3K21B UPSTREAM Plc21C	TF binding site mE1_TFBS_HSA
2L	13930605	2L_13930605_INS [dm3] 2L_13930605_INS [dm6]	T	TAT	4.184e^-4	0.967	UTR_3_PRIME CG42711 INTRON Ance-3
3R	3109925	3R_3109925_SNP [dm3] 3R_7284203_SNP [dm6]	T	C	4.192e^-4	0.967	INTRON rn
3L	15259850	3L_15259850_SNP [dm3] 3L_15266750_SNP [dm6]	A	G	4.193e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	19965484	2L_19965484_SNP [dm3] 2L_19965484_SNP [dm6]	A	G	4.201e^-4	0.967	UTR_3_PRIME CG10680 DOWNSTREAM OS9
3R	27743952	3R_27743952_SNP [dm3] 3R_31918230_SNP [dm6]	C	A	4.204e^-4	0.967	INTRON heph
4	541953	4_541953_SNP [dm3] 4_521327_SNP [dm6]	A	C	4.205e^-4	0.967	INTRON zfh2
3R	2704744	3R_2704744_MNP [dm3] 3R_6879022_MNP [dm6]	ACACAA	TTGGGC	4.205e^-4	0.967	INTRON CR44931	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18718212	3R_18718212_SNP [dm3] 3R_22892490_SNP [dm6]	C	T	4.211e^-4	0.967	INTERGENIC
2R	3021693	2R_3021693_SNP [dm3] 2R_7134188_SNP [dm6]	G	A	4.216e^-4	0.967	UPSTREAM CR44443 INTERGENIC
2L	19931517	2L_19931517_SNP [dm3] 2L_19931517_SNP [dm6]	A	C	4.222e^-4	0.967	INTRON sick
2R	19393182	2R_19393182_SNP [dm3] 2R_23505659_SNP [dm6]	G	C	4.229e^-4	0.967	INTERGENIC
2R	17230935	2R_17230935_SNP [dm3] 2R_21343430_SNP [dm6]	C	A	4.234e^-4	0.967	SYNONYMOUS_CODING CG15666
3R	6273996	3R_6273996_SNP [dm3] 3R_10448274_SNP [dm6]	C	T	4.236e^-4	0.967	INTERGENIC
3L	8675438	3L_8675438_SNP [dm3] 3L_8682338_SNP [dm6]	T	A	4.244e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd
X	19234731	X_19234731_SNP [dm3] X_19340698_SNP [dm6]	A	C	4.250e^-4	0.967	INTRON nAChRalpha7
3R	25553372	3R_25553372_SNP [dm3] 3R_29727650_SNP [dm6]	A	C	4.259e^-4	0.967	SPLICE_SITE_REGION Kul INTRON Kul	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8769039	2L_8769039_SNP [dm3] 2L_8769039_SNP [dm6]	G	A	4.266e^-4	0.967	UPSTREAM CG9463 DOWNSTREAM CG9465 INTERGENIC
2R	17678644	2R_17678644_SNP [dm3] 2R_21791139_SNP [dm6]	G	T	4.273e^-4	0.967	NON_SYNONYMOUS_CODING lox2
X	3933656	X_3933656_DEL [dm3] X_4039623_DEL [dm6]	CC	C	4.278e^-4	0.967	INTERGENIC
3L	11739024	3L_11739024_SNP [dm3] 3L_11745924_SNP [dm6]	C	G	4.283e^-4	0.967	INTRON CG6024
3R	14137898	3R_14137898_SNP [dm3] 3R_18312176_SNP [dm6]	T	G	4.284e^-4	0.967	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24986346	3R_24986346_SNP [dm3] 3R_29160624_SNP [dm6]	A	C	4.287e^-4	0.967	SYNONYMOUS_CODING CG11897	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2L	10713529	2L_10713529_SNP [dm3] 2L_10713529_SNP [dm6]	A	G	4.290e^-4	0.967	INTERGENIC
2L	20229915	2L_20229915_SNP [dm3] 2L_20229915_SNP [dm6]	G	A	4.310e^-4	0.967	INTERGENIC
X	12327578	X_12327578_SNP [dm3] X_12433545_SNP [dm6]	G	C	4.318e^-4	0.967	INTRON Pkcdelta
X	12327579	X_12327579_SNP [dm3] X_12433546_SNP [dm6]	A	G	4.318e^-4	0.967	INTRON Pkcdelta
X	12327584	X_12327584_SNP [dm3] X_12433551_SNP [dm6]	G	A	4.318e^-4	0.967	INTRON Pkcdelta
3L	1960235	3L_1960235_SNP [dm3] 3L_1960235_SNP [dm6]	G	C	4.328e^-4	0.967	NON_SYNONYMOUS_CODING mv
3R	14137899	3R_14137899_SNP [dm3] 3R_18312177_SNP [dm6]	T	G	4.329e^-4	0.967	UPSTREAM PKD INTRON PKD	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9735086	2R_9735086_SNP [dm3] 2R_13847581_SNP [dm6]	C	T	4.335e^-4	0.967	SYNONYMOUS_CODING CG30484
3L	4123093	3L_4123093_SNP [dm3] 3L_4123093_SNP [dm6]	T	C	4.339e^-4	0.967	UTR_3_PRIME ens UPSTREAM Chd64 DOWNSTREAM ens	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	5555821	3L_5555821_SNP [dm3] 3L_5562721_SNP [dm6]	G	A	4.345e^-4	0.967	SYNONYMOUS_CODING Sucb
3R	26093541	3R_26093541_SNP [dm3] 3R_30267819_SNP [dm6]	C	T	4.361e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
2R	18930739	2R_18930739_SNP [dm3] 2R_23043216_SNP [dm6]	C	A	4.376e^-4	0.967	UPSTREAM CG42741 INTRON twi	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	17690382	X_17690382_SNP [dm3] X_17796349_SNP [dm6]	G	A	4.380e^-4	0.967	INTRON OdsH
2L	9234704	2L_9234704_SNP [dm3] 2L_9234704_SNP [dm6]	C	T	4.382e^-4	0.967	INTRON tai	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	11408522	3L_11408522_SNP [dm3] 3L_11415422_SNP [dm6]	T	C	4.383e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1804685	3L_1804685_SNP [dm3] 3L_1804685_SNP [dm6]	G	A	4.386e^-4	0.967	SYNONYMOUS_CODING CG42676 UTR_3_PRIME CG42676 INTRON CG42676	TF binding site mE1_TFBS_cad
3R	20193485	3R_20193485_SNP [dm3] 3R_24367763_SNP [dm6]	A	T	4.393e^-4	0.967	NON_SYNONYMOUS_CODING CG42812 UPSTREAM CG42811 & 1 other
3L	17683823	3L_17683823_SNP [dm3] 3L_17690723_SNP [dm6]	T	C	4.402e^-4	0.967	INTRON Ccn
2L	21327362	2L_21327362_SNP [dm3] 2L_21327362_SNP [dm6]	T	G	4.405e^-4	0.967	DOWNSTREAM CR42696 INTERGENIC
2L	9674500	2L_9674500_SNP [dm3] 2L_9674500_SNP [dm6]	T	A	4.405e^-4	0.967	INTERGENIC
2L	1733656	2L_1733656_SNP [dm3] 2L_1733656_SNP [dm6]	A	G	4.418e^-4	0.967	INTRON CG17646
3L	12759892	3L_12759892_SNP [dm3] 3L_12766792_SNP [dm6]	G	A	4.421e^-4	0.967	SYNONYMOUS_CODING CG32113	TF binding site mE1_TFBS_sens
2L	17551825	2L_17551825_SNP [dm3] 2L_17551825_SNP [dm6]	C	A	4.423e^-4	0.967	INTERGENIC
2L	20039812	2L_20039812_SNP [dm3] 2L_20039812_SNP [dm6]	A	C	4.429e^-4	0.967	INTRON sNPF
3R	2345429	3R_2345429_SNP [dm3] 3R_6519707_SNP [dm6]	G	A	4.438e^-4	0.967	INTERGENIC
2R	20893830	2R_20893830_INS [dm3] 2R_25006307_INS [dm6]	A	AC	4.441e^-4	0.967	INTRON zip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	20893838	2R_20893838_SNP [dm3] 2R_25006315_SNP [dm6]	A	C	4.441e^-4	0.967	INTRON zip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10368279	2R_10368279_SNP [dm3] 2R_14480774_SNP [dm6]	G	A	4.468e^-4	0.967	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	19390601	2R_19390601_INS [dm3] 2R_23503078_INS [dm6]	T	TCTTGTAT	4.479e^-4	0.967	UTR_5_PRIME CG13559	TF binding site mE1_TFBS_inv
X	781919	X_781919_SNP [dm3] X_887886_SNP [dm6]	T	A	4.482e^-4	0.967	INTRON CG43867
3L	15259896	3L_15259896_SNP [dm3] 3L_15266796_SNP [dm6]	G	A	4.490e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	9890824	2L_9890824_SNP [dm3] 2L_9890824_SNP [dm6]	A	G	4.492e^-4	0.967	UPSTREAM CG4537 & 1 other DOWNSTREAM FKBP59 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
X	16159707	X_16159707_SNP [dm3] X_16265674_SNP [dm6]	C	T	4.504e^-4	0.967	SYNONYMOUS_CODING CG12507
2R	4913161	2R_4913161_SNP [dm3] 2R_9025656_SNP [dm6]	C	T	4.510e^-4	0.967	INTRON CG8170	TF binding site mE1_TFBS_chinmo
3L	7942970	3L_7942970_SNP [dm3] 3L_7949870_SNP [dm6]	T	C	4.518e^-4	0.967	INTRON exex
2R	18449612	2R_18449612_SNP [dm3] 2R_22562107_SNP [dm6]	G	A	4.525e^-4	0.967	UPSTREAM CG11362 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	24565446	3R_24565446_SNP [dm3] 3R_28739724_SNP [dm6]	C	T	4.526e^-4	0.967	INTRON AstA-R2
2L	4941498	2L_4941498_SNP [dm3] 2L_4941498_SNP [dm6]	G	C	4.548e^-4	0.967	DOWNSTREAM Sgs1 INTERGENIC
3R	26093036	3R_26093036_DEL [dm3] 3R_30267314_DEL [dm6]	CG	C	4.552e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	6768093	2L_6768093_SNP [dm3] 2L_6768093_SNP [dm6]	C	T	4.562e^-4	0.967	SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12661842	X_12661842_SNP [dm3] X_12767809_SNP [dm6]	A	C	4.562e^-4	0.967	INTRON CG3812
2L	3607502	2L_3607502_SNP [dm3] 2L_3607502_SNP [dm6]	T	C	4.570e^-4	0.967	UPSTREAM odd INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2L	6611035	2L_6611035_SNP [dm3] 2L_6611035_SNP [dm6]	C	G	4.577e^-4	0.967	UTR_5_PRIME CG11050 UPSTREAM CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
2L	9389879	2L_9389879_SNP [dm3] 2L_9389879_SNP [dm6]	A	G	4.581e^-4	0.967	SYNONYMOUS_CODING Aldh INTRON Shawl
3L	9414275	3L_9414275_SNP [dm3] 3L_9421175_SNP [dm6]	A	C	4.588e^-4	0.967	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2840120	3R_2840120_SNP [dm3] 3R_7014398_SNP [dm6]	A	T	4.591e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	19956463	2L_19956463_SNP [dm3] 2L_19956463_SNP [dm6]	T	C	4.600e^-4	0.967	SPLICE_SITE_REGION sick INTRON sick	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	19318432	3L_19318432_SNP [dm3] 3L_19325332_SNP [dm6]	T	A	4.600e^-4	0.967	INTRON pip
2L	11103728	2L_11103728_SNP [dm3] 2L_11103728_SNP [dm6]	A	G	4.601e^-4	0.967	INTRON Reps
3R	27763973	3R_27763973_INS [dm3] 3R_31938251_INS [dm6]	C	CAAGAGGGTGGC...	4.601e^-4	0.967	UPSTREAM heph INTRON heph	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	8641817	2R_8641817_SNP [dm3] 2R_12754312_SNP [dm6]	A	G	4.614e^-4	0.967	INTRON Taz	TF binding site mE1_TFBS_cad
3R	7283692	3R_7283692_SNP [dm3] 3R_11457970_SNP [dm6]	G	T	4.623e^-4	0.967	UTR_5_PRIME PGRP-LB INTRON CG17230 & 1 other
3L	18602669	3L_18602669_SNP [dm3] 3L_18609569_SNP [dm6]	C	T	4.626e^-4	0.967	UPSTREAM CG32201 DOWNSTREAM CG18231 INTRON CG4174 & 1 other
2L	15253532	2L_15253532_SNP [dm3] 2L_15253532_SNP [dm6]	G	A	4.630e^-4	0.967	SYNONYMOUS_CODING dao DOWNSTREAM dao
3L	12402315	3L_12402315_SNP [dm3] 3L_12409215_SNP [dm6]	G	A	4.633e^-4	0.967	UPSTREAM CG32103 INTRON CG32103
2L	12103661	2L_12103661_INS [dm3] 2L_12103661_INS [dm6]	T	TT	4.643e^-4	0.967	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2649895	2L_2649895_SNP [dm3] 2L_2649895_SNP [dm6]	G	A	4.655e^-4	0.967	SYNONYMOUS_CODING CG33125 UTR_3_PRIME CG33125
X	12000959	X_12000959_SNP [dm3] X_12106926_SNP [dm6]	G	A	4.661e^-4	0.967	UPSTREAM CG2750 INTRON CR43960 & 1 other
2R	2056223	2R_2056223_DEL [dm3] 2R_6168718_DEL [dm6]	AA	A	4.665e^-4	0.967	UPSTREAM tRNA:R2:42Ab INTRON EcR	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	766660	2R_766660_SNP [dm3] 2R_4879155_SNP [dm6]	C	A	4.665e^-4	0.967	INTERGENIC
2R	9793123	2R_9793123_SNP [dm3] 2R_13905618_SNP [dm6]	T	G	4.675e^-4	0.967	INTRON shot
3R	3046968	3R_3046968_SNP [dm3] 3R_7221246_SNP [dm6]	T	A	4.677e^-4	0.967	INTERGENIC
3R	3083560	3R_3083560_SNP [dm3] 3R_7257838_SNP [dm6]	C	A	4.677e^-4	0.967	INTRON Gld
3R	3085617	3R_3085617_SNP [dm3] 3R_7259895_SNP [dm6]	T	C	4.677e^-4	0.967	INTRON Gld
3R	3195632	3R_3195632_SNP [dm3] 3R_7369910_SNP [dm6]	A	C	4.677e^-4	0.967	UPSTREAM MstProx INTERGENIC
3R	21264491	3R_21264491_SNP [dm3] 3R_25438769_SNP [dm6]	T	C	4.684e^-4	0.967	INTRON Fur1
3R	20290255	3R_20290255_SNP [dm3] 3R_24464533_SNP [dm6]	G	T	4.697e^-4	0.967	UPSTREAM CR45649 INTERGENIC
X	4129213	X_4129213_SNP [dm3] X_4235180_SNP [dm6]	G	C	4.704e^-4	0.967	INTERGENIC
2L	22062040	2L_22062040_SNP [dm3] 2L_22062040_SNP [dm6]	G	T	4.715e^-4	0.967	INTERGENIC
2R	17262401	2R_17262401_SNP [dm3] 2R_21374896_SNP [dm6]	G	T	4.716e^-4	0.967	INTRON cv-2
2R	13770087	2R_13770087_DEL [dm3] 2R_17882582_DEL [dm6]	TCCTA	T	4.717e^-4	0.967	UPSTREAM CG30110 INTRON Elk
2L	5805628	2L_5805628_SNP [dm3] 2L_5805628_SNP [dm6]	A	C	4.717e^-4	0.967	SYNONYMOUS_CODING CG11034	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
3L	1072575	3L_1072575_DEL [dm3] 3L_1072575_DEL [dm6]	AAAAAA	A	4.721e^-4	0.967	INTRON bab1
3L	2428533	3L_2428533_SNP [dm3] 3L_2428533_SNP [dm6]	C	T	4.726e^-4	0.967	UPSTREAM CG45186 INTRON CG45186	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	763331	X_763331_SNP [dm3] X_869298_SNP [dm6]	C	T	4.750e^-4	0.967	INTRON CG43867	TF binding site mE1_TFBS_HSA
4	423421	4_423421_SNP [dm3] 4_402795_SNP [dm6]	C	T	4.752e^-4	0.967	INTERGENIC
2L	6494373	2L_6494373_SNP [dm3] 2L_6494373_SNP [dm6]	G	A	4.773e^-4	0.967	SYNONYMOUS_CODING CG9547 INTRON CG31638	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_Trl
2L	3481179	2L_3481179_SNP [dm3] 2L_3481179_SNP [dm6]	A	T	4.774e^-4	0.967	SYNONYMOUS_CODING CG15414	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	19920408	2L_19920408_SNP [dm3] 2L_19920408_SNP [dm6]	A	T	4.776e^-4	0.967	INTRON sick EXON CR43828
3L	11330244	3L_11330244_DEL [dm3] 3L_11337144_DEL [dm6]	TT	T	4.790e^-4	0.967	INTERGENIC
3L	616276	3L_616276_SNP [dm3] 3L_616276_SNP [dm6]	T	C	4.791e^-4	0.967	EXON CR42719	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3172006	X_3172006_SNP [dm3] X_3277973_SNP [dm6]	G	C	4.795e^-4	0.967	INTRON dnc
X	15813402	X_15813402_SNP [dm3] X_15919369_SNP [dm6]	A	T	4.797e^-4	0.967	SYNONYMOUS_CODING CG8909
2L	20474784	2L_20474784_SNP [dm3] 2L_20474784_SNP [dm6]	G	T	4.799e^-4	0.967	INTRON CR44980
2L	2722034	2L_2722034_SNP [dm3] 2L_2722034_SNP [dm6]	G	T	4.800e^-4	0.967	INTERGENIC
2R	6859618	2R_6859618_SNP [dm3] 2R_10972113_SNP [dm6]	C	T	4.807e^-4	0.967	INTERGENIC	TF binding site mE1_TFBS_inv
3R	15445387	3R_15445387_SNP [dm3] 3R_19619665_SNP [dm6]	T	C	4.808e^-4	0.967	INTRON CG6231
2L	19872262	2L_19872262_SNP [dm3] 2L_19872262_SNP [dm6]	C	T	4.811e^-4	0.967	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	3156688	2L_3156688_SNP [dm3] 2L_3156688_SNP [dm6]	T	G	4.820e^-4	0.967	INTRON Mad
3R	3075992	3R_3075992_SNP [dm3] 3R_7250270_SNP [dm6]	G	C	4.821e^-4	0.967	NON_SYNONYMOUS_CODING CG10050 UPSTREAM CG1227 DOWNSTREAM Obp84a	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	3078661	3R_3078661_SNP [dm3] 3R_7252939_SNP [dm6]	C	T	4.821e^-4	0.967	NON_SYNONYMOUS_CODING Gld UPSTREAM Obp84a	TF binding site mE1_TFBS_cad
3R	3080575	3R_3080575_DEL [dm3] 3R_7254853_DEL [dm6]	TCTGTTGCG	T	4.821e^-4	0.967	INTRON Gld
3R	3102979	3R_3102979_SNP [dm3] 3R_7277257_SNP [dm6]	G	C	4.821e^-4	0.967	SYNONYMOUS_CODING rn INTRON rn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	9023102	3L_9023102_SNP [dm3] 3L_9030002_SNP [dm6]	C	T	4.824e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	7536575	2R_7536575_SNP [dm3] 2R_11649070_SNP [dm6]	T	G	4.839e^-4	0.967	UPSTREAM CG9003 INTRON CG9003	TF binding site BDTNP1_TFBS_dl
3L	11267916	3L_11267916_SNP [dm3] 3L_11274816_SNP [dm6]	G	A	4.859e^-4	0.967	UPSTREAM CR44720 INTERGENIC
3R	7285340	3R_7285340_SNP [dm3] 3R_11459618_SNP [dm6]	A	T	4.861e^-4	0.967	INTRON CG17230 & 1 other
2L	5224696	2L_5224696_SNP [dm3] 2L_5224696_SNP [dm6]	G	C	4.864e^-4	0.967	INTRON tkv	TF binding site mE1_TFBS_inv
3L	1133946	3L_1133946_SNP [dm3] 3L_1133946_SNP [dm6]	C	A	4.877e^-4	0.967	INTERGENIC	regulatory region REDfly_CRMs
X	6742644	X_6742644_SNP [dm3] X_6848611_SNP [dm6]	T	C	4.884e^-4	0.967	SYNONYMOUS_CODING Cht11 DOWNSTREAM CG4557	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	27782470	3R_27782470_DEL [dm3] 3R_31956748_DEL [dm6]	ACCAGCGTTCTACAGA...	A	4.885e^-4	0.967	INTRON heph	TF binding site mE1_TFBS_cad
2L	3411369	2L_3411369_DEL [dm3] 2L_3411369_DEL [dm6]	TT	T	4.887e^-4	0.967	DOWNSTREAM CG8840 INTRON pgant2
2R	1840177	2R_1840177_INS [dm3] 2R_5952672_INS [dm6]	T	TAAC	4.889e^-4	0.967	INTERGENIC
3L	339633	3L_339633_SNP [dm3] 3L_339633_SNP [dm6]	C	T	4.891e^-4	0.967	UPSTREAM mthl10 INTRON Ptpmeg & 1 other	TF binding site BDTNP1_TFBS_prd
2L	8308437	2L_8308437_SNP [dm3] 2L_8308437_SNP [dm6]	A	G	4.893e^-4	0.967	UTR_5_PRIME CG7818 UPSTREAM Ostgamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	4455350	2L_4455350_SNP [dm3] 2L_4455350_SNP [dm6]	G	A	4.895e^-4	0.967	SYNONYMOUS_CODING Gs1l UPSTREAM CG15440 DOWNSTREAM CG15434	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	20039950	2L_20039950_INS [dm3] 2L_20039950_INS [dm6]	A	AA	4.897e^-4	0.967	INTRON sNPF
3R	4105331	3R_4105331_SNP [dm3] 3R_8279609_SNP [dm6]	C	G	4.901e^-4	0.967	DOWNSTREAM ato INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	16512645	X_16512645_SNP [dm3] X_16618612_SNP [dm6]	A	G	4.902e^-4	0.967	INTRON CG9782	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	12342335	2L_12342335_SNP [dm3] 2L_12342335_SNP [dm6]	C	A	4.907e^-4	0.967	INTERGENIC
3L	19356111	3L_19356111_SNP [dm3] 3L_19363011_SNP [dm6]	A	T	4.912e^-4	0.967	INTRON CG32206
2L	19965547	2L_19965547_SNP [dm3] 2L_19965547_SNP [dm6]	T	C	4.922e^-4	0.967	UTR_3_PRIME CG10680 DOWNSTREAM OS9 & 1 other
2L	6173986	2L_6173986_SNP [dm3] 2L_6173986_SNP [dm6]	A	G	4.926e^-4	0.967	INTERGENIC
3L	8236880	3L_8236880_SNP [dm3] 3L_8243780_SNP [dm6]	G	T	4.930e^-4	0.967	INTRON Dscam4
2R	15289106	2R_15289106_INS [dm3] 2R_19401601_INS [dm6]	A	AA	4.931e^-4	0.967	DOWNSTREAM hts & 1 other INTRON hts
2R	16876080	2R_16876080_SNP [dm3] 2R_20988575_SNP [dm6]	C	T	4.933e^-4	0.967	SYNONYMOUS_CODING CG3216	TF binding site mE1_TFBS_cad
3R	27750321	3R_27750321_INS [dm3] 3R_31924599_INS [dm6]	T	TTTCTTGGACGTGACTAG...	4.936e^-4	0.967	INTRON heph
3R	10371810	3R_10371810_SNP [dm3] 3R_14546088_SNP [dm6]	A	T	4.938e^-4	0.967	INTRON Pde6
3L	11221597	3L_11221597_SNP [dm3] 3L_11228497_SNP [dm6]	G	T	4.939e^-4	0.967	UTR_3_PRIME CG42671 INTRON CG42671	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2R	16251910	2R_16251910_SNP [dm3] 2R_20364405_SNP [dm6]	C	T	4.943e^-4	0.967	INTERGENIC
X	6200556	X_6200556_SNP [dm3] X_6306523_SNP [dm6]	A	T	4.945e^-4	0.967	UTR_3_PRIME CG3823
2R	10446628	2R_10446628_SNP [dm3] 2R_14559123_SNP [dm6]	G	C	4.958e^-4	0.967	INTRON ttv
2L	3295545	2L_3295545_SNP [dm3] 2L_3295545_SNP [dm6]	G	A	4.966e^-4	0.967	SYNONYMOUS_CODING CG9663 UPSTREAM CG9664
X	20265336	X_20265336_SNP [dm3] X_20394309_SNP [dm6]	G	A	4.976e^-4	0.967	UPSTREAM HERC2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3R	23434708	3R_23434708_SNP [dm3] 3R_27608986_SNP [dm6]	C	A	4.979e^-4	0.967	INTRON Tusp	TF binding site mE1_TFBS_HSA
2L	1742882	2L_1742882_SNP [dm3] 2L_1742882_SNP [dm6]	T	C	4.985e^-4	0.967	INTRON CG17646
2L	11103785	2L_11103785_SNP [dm3] 2L_11103785_SNP [dm6]	A	C	4.997e^-4	0.967	INTRON Reps
2L	5632161	2L_5632161_SNP [dm3] 2L_5632161_SNP [dm6]	T	A	5.004e^-4	0.967	SYNONYMOUS_CODING CG31646 EXON CR44822	TF binding site mE1_TFBS_chinmo
2R	8551595	2R_8551595_SNP [dm3] 2R_12664090_SNP [dm6]	A	T	5.007e^-4	0.967	INTRON nemy
X	16352119	X_16352119_SNP [dm3] X_16458086_SNP [dm6]	C	T	5.014e^-4	0.967	UTR_3_PRIME para DOWNSTREAM para	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12703954	2R_12703954_SNP [dm3] 2R_16816449_SNP [dm6]	G	C	5.015e^-4	0.967	UPSTREAM CR44380 & 1 other INTERGENIC
X	12343074	X_12343074_SNP [dm3] X_12449041_SNP [dm6]	T	G	5.016e^-4	0.967	INTRON Pkcdelta
3L	8067204	3L_8067204_SNP [dm3] 3L_8074104_SNP [dm6]	G	T	5.022e^-4	0.967	UPSTREAM Ect4 INTRON Ect4	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	3247093	2L_3247093_INS [dm3] 2L_3247093_INS [dm6]	T	TT	5.029e^-4	0.967	INTERGENIC
3L	14334796	3L_14334796_SNP [dm3] 3L_14341696_SNP [dm6]	T	C	5.033e^-4	0.967	INTRON fz
X	8522272	X_8522272_INS [dm3] X_8628239_INS [dm6]	G	GAG	5.041e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	6611251	2L_6611251_SNP [dm3] 2L_6611251_SNP [dm6]	A	G	5.044e^-4	0.967	UTR_5_PRIME CG11050 UPSTREAM CG11050	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr
X	19985972	X_19985972_SNP [dm3] X_20091939_SNP [dm6]	G	T	5.049e^-4	0.967	SYNONYMOUS_CODING fd19B	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	9780482	3R_9780482_SNP [dm3] 3R_13954760_SNP [dm6]	C	T	5.050e^-4	0.967	INTERGENIC
2L	18547692	2L_18547692_SNP [dm3] 2L_18547692_SNP [dm6]	C	A	5.057e^-4	0.967	INTRON Pde11
2L	9587034	2L_9587034_SNP [dm3] 2L_9587034_SNP [dm6]	C	G	5.058e^-4	0.967	UPSTREAM CR43621 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
4	547881	4_547881_SNP [dm3] 4_527255_SNP [dm6]	G	A	5.059e^-4	0.967	INTRON zfh2
2L	12502373	2L_12502373_SNP [dm3] 2L_12502373_SNP [dm6]	G	T	5.062e^-4	0.967	INTRON bun	TF binding site mE1_TFBS_inv
2R	12440240	2R_12440240_SNP [dm3] 2R_16552735_SNP [dm6]	G	A	5.064e^-4	0.967	INTRON Syn2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	19347826	3L_19347826_SNP [dm3] 3L_19354726_SNP [dm6]	G	C	5.068e^-4	0.967	INTRON CG32206
2L	8712101	2L_8712101_SNP [dm3] 2L_8712101_SNP [dm6]	T	G	5.073e^-4	0.967	INTRON raw
X	2603524	X_2603524_SNP [dm3] X_2709491_SNP [dm6]	G	A	5.087e^-4	0.967	SYNONYMOUS_CODING CG2681	TF binding site mE1_TFBS_chinmo
3L	17586256	3L_17586256_SNP [dm3] 3L_17593156_SNP [dm6]	A	T	5.095e^-4	0.967	INTRON Eip74EF
2L	18525617	2L_18525617_SNP [dm3] 2L_18525617_SNP [dm6]	T	A	5.099e^-4	0.967	INTRON CG10211
2L	6228906	2L_6228906_SNP [dm3] 2L_6228906_SNP [dm6]	G	A	5.103e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6768143	2L_6768143_SNP [dm3] 2L_6768143_SNP [dm6]	C	T	5.106e^-4	0.967	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10370897	2R_10370897_DEL [dm3] 2R_14483392_DEL [dm6]	ACTCAA	A	5.106e^-4	0.967	INTRON L	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	6265513	3R_6265513_SNP [dm3] 3R_10439791_SNP [dm6]	A	G	5.106e^-4	0.967	INTERGENIC
2R	16461134	2R_16461134_SNP [dm3] 2R_20573629_SNP [dm6]	T	A	5.118e^-4	0.967	INTRON qsm	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18392528	2R_18392528_SNP [dm3] 2R_22505023_SNP [dm6]	G	C	5.131e^-4	0.967	INTRON px	TF binding site BDTNP1_TFBS_twi
3L	1864387	3L_1864387_DEL [dm3] 3L_1864387_DEL [dm6]	GTTG	G	5.131e^-4	0.967		TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2L	19840892	2L_19840892_SNP [dm3] 2L_19840892_SNP [dm6]	C	T	5.148e^-4	0.967	INTRON sick
3L	19335172	3L_19335172_SNP [dm3] 3L_19342072_SNP [dm6]	C	T	5.150e^-4	0.967	UTR_3_PRIME CG32206
2L	2095317	2L_2095317_SNP [dm3] 2L_2095317_SNP [dm6]	A	C	5.159e^-4	0.967	INTRON dpr3
3L	10424221	3L_10424221_SNP [dm3] 3L_10431121_SNP [dm6]	G	A	5.171e^-4	0.967	NON_SYNONYMOUS_CODING Ir67b
3L	16251717	3L_16251717_SNP [dm3] 3L_16258617_SNP [dm6]	A	C	5.178e^-4	0.967	DOWNSTREAM CG13053 INTERGENIC
3L	15259838	3L_15259838_SNP [dm3] 3L_15266738_SNP [dm6]	A	G	5.179e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	3069916	3R_3069916_SNP [dm3] 3R_7244194_SNP [dm6]	C	A	5.180e^-4	0.967	DOWNSTREAM CG1234 & 1 other INTERGENIC
2R	18030597	2R_18030597_SNP [dm3] 2R_22143092_SNP [dm6]	T	C	5.183e^-4	0.967	INTRON a	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9316465	2L_9316465_SNP [dm3] 2L_9316465_SNP [dm6]	C	T	5.195e^-4	0.967	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7109267	2R_7109267_SNP [dm3] 2R_11221762_SNP [dm6]	C	T	5.199e^-4	0.967	INTRON Syx6
2R	7822953	2R_7822953_SNP [dm3] 2R_11935448_SNP [dm6]	A	G	5.201e^-4	0.967	INTERGENIC
X	762669	X_762669_SNP [dm3] X_868636_SNP [dm6]	T	G	5.201e^-4	0.967	INTRON CG43867
2L	12103498	2L_12103498_SNP [dm3] 2L_12103498_SNP [dm6]	C	G	5.202e^-4	0.967	UPSTREAM Aats-thr & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
3L	8299654	3L_8299654_SNP [dm3] 3L_8306554_SNP [dm6]	C	T	5.203e^-4	0.967	SYNONYMOUS_CODING Gr66a DOWNSTREAM BI-1	TF binding site mE1_TFBS_sens
2L	15342125	2L_15342125_SNP [dm3] 2L_15342125_SNP [dm6]	G	T	5.219e^-4	0.967	INTERGENIC
3R	24669852	3R_24669852_SNP [dm3] 3R_28844130_SNP [dm6]	C	T	5.226e^-4	0.967	INTRON Apc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	2177022	3L_2177022_SNP [dm3] 3L_2177022_SNP [dm6]	G	T	5.229e^-4	0.967	INTERGENIC
2L	8862218	2L_8862218_SNP [dm3] 2L_8862218_SNP [dm6]	A	G	5.230e^-4	0.967	UPSTREAM CG32986 DOWNSTREAM CR45260 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	26444353	3R_26444353_SNP [dm3] 3R_30618631_SNP [dm6]	C	T	5.233e^-4	0.967	UTR_3_PRIME CG44954
2L	12502410	2L_12502410_SNP [dm3] 2L_12502410_SNP [dm6]	T	C	5.239e^-4	0.967	INTRON bun
3L	7707084	3L_7707084_SNP [dm3] 3L_7713984_SNP [dm6]	T	C	5.241e^-4	0.967	UPSTREAM Ank2 INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5779483	3L_5779483_SNP [dm3] 3L_5786383_SNP [dm6]	C	G	5.246e^-4	0.967	INTRON Cralbp
3R	14119672	3R_14119672_SNP [dm3] 3R_18293950_SNP [dm6]	C	T	5.246e^-4	0.967	INTRON l_3_05822
2L	9849797	2L_9849797_SNP [dm3] 2L_9849797_SNP [dm6]	G	C	5.247e^-4	0.967	INTRON nAChRalpha6
2R	10368843	2R_10368843_SNP [dm3] 2R_14481338_SNP [dm6]	C	T	5.251e^-4	0.967	UTR_5_PRIME L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26894109	3R_26894109_SNP [dm3] 3R_31068387_SNP [dm6]	C	G	5.257e^-4	0.967	INTRON Sox100B
3R	4086459	3R_4086459_SNP [dm3] 3R_8260737_SNP [dm6]	G	A	5.257e^-4	0.967	DOWNSTREAM mtg EXON CR18228
3L	7928436	3L_7928436_SNP [dm3] 3L_7935336_SNP [dm6]	G	C	5.264e^-4	0.967	INTRON syd	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26259073	3R_26259073_SNP [dm3] 3R_30433351_SNP [dm6]	C	T	5.291e^-4	0.967	INTRON CG15534
3R	7388993	3R_7388993_SNP [dm3] 3R_11563271_SNP [dm6]	C	A	5.318e^-4	0.967	UTR_5_PRIME sea UPSTREAM sea DOWNSTREAM fabp INTRON fabp & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	3195091	3R_3195091_SNP [dm3] 3R_7369369_SNP [dm6]	T	A	5.321e^-4	0.967	UPSTREAM MstProx INTERGENIC
X	20245059	X_20245059_SNP [dm3] X_20374032_SNP [dm6]	G	T	5.323e^-4	0.967	INTERGENIC

By genomic position
Variant impact
Gene name

Ecc15_FracDead_10d phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results