DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=2.532e^-7)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1213 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
3R	25798634	3R_25798634_SNP [dm3] 3R_29972912_SNP [dm6]	C	G	2.023e^-6	0.974	INTERGENIC
3R	25798644	3R_25798644_SNP [dm3] 3R_29972922_SNP [dm6]	G	A	2.260e^-6	0.974	INTERGENIC
3R	25798645	3R_25798645_SNP [dm3] 3R_29972923_SNP [dm6]	G	C	2.260e^-6	0.974	INTERGENIC
3R	23816356	3R_23816356_SNP [dm3] 3R_27990634_SNP [dm6]	T	C	4.094e^-6	0.974	UTR_5_PRIME CG4815
3R	23816361	3R_23816361_SNP [dm3] 3R_27990639_SNP [dm6]	C	T	4.094e^-6	0.974	START_GAINED CG4815 UTR_5_PRIME CG4815
3L	12007433	3L_12007433_SNP [dm3] 3L_12014333_SNP [dm6]	A	T	5.581e^-6	0.974	INTRON rols
3L	12007537	3L_12007537_SNP [dm3] 3L_12014437_SNP [dm6]	G	A	6.574e^-6	0.974	INTRON rols
3L	12007530	3L_12007530_SNP [dm3] 3L_12014430_SNP [dm6]	C	A	7.722e^-6	0.974	INTRON rols
3R	22752598	3R_22752598_SNP [dm3] 3R_26926876_SNP [dm6]	T	C	1.279e^-5	0.974	INTRON sda
3R	13409284	3R_13409284_SNP [dm3] 3R_17583562_SNP [dm6]	C	T	1.369e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12883434	3L_12883434_SNP [dm3] 3L_12890334_SNP [dm6]	T	C	1.510e^-5	0.974	UPSTREAM CR45748 INTRON CG43894
3R	13409285	3R_13409285_SNP [dm3] 3R_17583563_SNP [dm6]	C	G	1.698e^-5	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	12883415	3L_12883415_SNP [dm3] 3L_12890315_SNP [dm6]	T	G	2.243e^-5	0.974	UPSTREAM CR45748 INTRON CG43894
3L	12883459	3L_12883459_SNP [dm3] 3L_12890359_SNP [dm6]	T	C	2.243e^-5	0.974	SYNONYMOUS_CODING CG43894 UPSTREAM CR45748
3R	23815878	3R_23815878_SNP [dm3] 3R_27990156_SNP [dm6]	C	T	2.438e^-5	0.974	SYNONYMOUS_CODING CG4815	TF binding site mE1_TFBS_sens
2R	9837459	2R_9837459_SNP [dm3] 2R_13949954_SNP [dm6]	G	A	2.818e^-5	0.974	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	9837501	2R_9837501_SNP [dm3] 2R_13949996_SNP [dm6]	G	A	2.818e^-5	0.974	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24844967	3R_24844967_SNP [dm3] 3R_29019245_SNP [dm6]	T	A	2.932e^-5	0.974	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9951721	3R_9951721_SNP [dm3] 3R_14125999_SNP [dm6]	A	C	2.967e^-5	0.974	UPSTREAM 140up INTRON RpII140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5874296	3L_5874296_SNP [dm3] 3L_5881196_SNP [dm6]	T	G	3.244e^-5	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	19880854	2R_19880854_SNP [dm3] 2R_23993331_SNP [dm6]	T	A	3.403e^-5	0.974	UPSTREAM mir-1009 INTRON CG3860
2R	19880859	2R_19880859_SNP [dm3] 2R_23993336_SNP [dm6]	C	G	3.403e^-5	0.974	UPSTREAM mir-1009 INTRON CG3860
2R	19880863	2R_19880863_SNP [dm3] 2R_23993340_SNP [dm6]	T	A	3.438e^-5	0.974	UPSTREAM mir-1009 INTRON CG3860
3R	23815866	3R_23815866_SNP [dm3] 3R_27990144_SNP [dm6]	G	A	3.447e^-5	0.974	SYNONYMOUS_CODING CG4815	TF binding site mE1_TFBS_sens
2L	8780948	2L_8780948_SNP [dm3] 2L_8780948_SNP [dm6]	C	T	3.450e^-5	0.974	DOWNSTREAM CG42710 INTRON CG9468
2L	1838496	2L_1838496_SNP [dm3] 2L_1838496_SNP [dm6]	G	C	3.597e^-5	0.974	DOWNSTREAM CR44073 INTRON wry
2R	19882363	2R_19882363_SNP [dm3] 2R_23994840_SNP [dm6]	T	C	3.732e^-5	0.974	UTR_5_PRIME CG3860 DOWNSTREAM Unc-89
3L	12886091	3L_12886091_SNP [dm3] 3L_12892991_SNP [dm6]	A	C	3.876e^-5	0.974	DOWNSTREAM CG43894 INTRON CG14118	TF binding site mE1_TFBS_Trl
2L	1838533	2L_1838533_SNP [dm3] 2L_1838533_SNP [dm6]	A	C	4.107e^-5	0.974	DOWNSTREAM CR44073 INTRON wry
X	10191090	X_10191090_SNP [dm3] X_10297057_SNP [dm6]	C	G	4.377e^-5	0.974	INTRON alpha-Man-I
2R	9837441	2R_9837441_SNP [dm3] 2R_13949936_SNP [dm6]	A	T	4.388e^-5	0.974	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19138299	2L_19138299_SNP [dm3] 2L_19138299_SNP [dm6]	G	A	4.691e^-5	0.974	INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	9951715	3R_9951715_SNP [dm3] 3R_14125993_SNP [dm6]	T	G	4.846e^-5	0.974	UPSTREAM 140up INTRON RpII140	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	9562019	3R_9562019_SNP [dm3] 3R_13736297_SNP [dm6]	A	T	4.920e^-5	0.974	INTRON CG34383
2L	1838453	2L_1838453_SNP [dm3] 2L_1838453_SNP [dm6]	T	A	4.980e^-5	0.974	INTRON wry
2L	1838459	2L_1838459_SNP [dm3] 2L_1838459_SNP [dm6]	T	A	4.980e^-5	0.974	INTRON wry
3L	4419657	3L_4419657_SNP [dm3] 3L_4419657_SNP [dm6]	T	C	5.373e^-5	0.974	SYNONYMOUS_CODING DOR	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20111193	2R_20111193_SNP [dm3] 2R_24223670_SNP [dm6]	C	T	5.376e^-5	0.974	INTRON CG30419
X	19072894	X_19072894_SNP [dm3] X_19178861_SNP [dm6]	A	T	5.481e^-5	0.974	INTRON CG7556
2R	8252419	2R_8252419_SNP [dm3] 2R_12364914_SNP [dm6]	G	A	5.535e^-5	0.974	EXON CR33013
2L	3216719	2L_3216719_SNP [dm3] 2L_3216719_SNP [dm6]	C	G	5.648e^-5	0.974	INTERGENIC
2R	16638857	2R_16638857_SNP [dm3] 2R_20751352_SNP [dm6]	G	T	5.679e^-5	0.974	NON_SYNONYMOUS_CODING CG34201 DOWNSTREAM dpr
3R	26666789	3R_26666789_SNP [dm3] 3R_30841067_SNP [dm6]	C	G	5.763e^-5	0.974	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23299020	3R_23299020_SNP [dm3] 3R_27473298_SNP [dm6]	T	G	5.848e^-5	0.974	INTERGENIC
X	10191105	X_10191105_SNP [dm3] X_10297072_SNP [dm6]	A	G	5.868e^-5	0.974	INTRON alpha-Man-I
3R	23000795	3R_23000795_SNP [dm3] 3R_27175073_SNP [dm6]	C	A	5.886e^-5	0.974	INTRON Ser
3L	14845477	3L_14845477_SNP [dm3] 3L_14852377_SNP [dm6]	T	A	5.933e^-5	0.974	INTRON CG17839
2L	10118456	2L_10118456_SNP [dm3] 2L_10118456_SNP [dm6]	A	T	6.083e^-5	0.974	INTRON CG44153 & 1 other	transposable element FlyBase
3R	3144013	3R_3144013_SNP [dm3] 3R_7318291_SNP [dm6]	C	T	6.090e^-5	0.974	INTERGENIC
2R	13724201	2R_13724201_SNP [dm3] 2R_17836696_SNP [dm6]	T	C	6.128e^-5	0.974	INTRON grh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14844566	2R_14844566_SNP [dm3] 2R_18957061_SNP [dm6]	T	C	6.351e^-5	0.974	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	6734299	2R_6734299_SNP [dm3] 2R_10846794_SNP [dm6]	A	C	6.534e^-5	0.974	INTRON CG30015
3R	26666783	3R_26666783_SNP [dm3] 3R_30841061_SNP [dm6]	C	T	6.590e^-5	0.974	SYNONYMOUS_CODING CG15544	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19270508	2R_19270508_SNP [dm3] 2R_23382985_SNP [dm6]	T	G	6.660e^-5	0.974	UPSTREAM CR44784 DOWNSTREAM yellow-d2 INTRON CG13551	TF binding site mE1_TFBS_cad
3R	18454521	3R_18454521_SNP [dm3] 3R_22628799_SNP [dm6]	A	C	6.996e^-5	0.974	UPSTREAM CR43474 INTRON loco EXON CR43475	regulatory region REDfly_CRMs
2L	6763744	2L_6763744_SNP [dm3] 2L_6763744_SNP [dm6]	C	A	7.073e^-5	0.974	NON_SYNONYMOUS_CODING CG11321	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	20245354	X_20245354_SNP [dm3] X_20374327_SNP [dm6]	A	T	7.170e^-5	0.974	INTERGENIC
3R	24816610	3R_24816610_SNP [dm3] 3R_28990888_SNP [dm6]	C	G	7.504e^-5	0.974	INTERGENIC
X	10705184	X_10705184_SNP [dm3] X_10811151_SNP [dm6]	G	C	7.514e^-5	0.974	INTRON Imp	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14557679	2R_14557679_SNP [dm3] 2R_18670174_SNP [dm6]	C	A	7.558e^-5	0.974	INTRON edl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	17818652	2R_17818652_SNP [dm3] 2R_21931147_SNP [dm6]	G	A	7.653e^-5	0.974	INTRON Fili
3R	17212628	3R_17212628_SNP [dm3] 3R_21386906_SNP [dm6]	T	A	7.822e^-5	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	27340138	3R_27340138_SNP [dm3] 3R_31514416_SNP [dm6]	T	C	7.930e^-5	0.974	INTERGENIC
3R	27340370	3R_27340370_SNP [dm3] 3R_31514648_SNP [dm6]	T	C	7.930e^-5	0.974	INTERGENIC
3R	26121059	3R_26121059_SNP [dm3] 3R_30295337_SNP [dm6]	C	T	7.958e^-5	0.974	INTRON hdc
X	19072973	X_19072973_SNP [dm3] X_19178940_SNP [dm6]	G	A	8.012e^-5	0.974	INTRON CG7556	TF binding site BDTNP1_TFBS_dl
2R	13704366	2R_13704366_SNP [dm3] 2R_17816861_SNP [dm6]	A	G	8.177e^-5	0.974	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3R	19707888	3R_19707888_SNP [dm3] 3R_23882166_SNP [dm6]	C	T	8.219e^-5	0.974	INTRON Pli
3R	17212554	3R_17212554_SNP [dm3] 3R_21386832_SNP [dm6]	C	T	8.298e^-5	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	17212560	3R_17212560_SNP [dm3] 3R_21386838_SNP [dm6]	A	G	8.298e^-5	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9955109	3R_9955109_SNP [dm3] 3R_14129387_SNP [dm6]	G	A	8.344e^-5	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	10191091	X_10191091_SNP [dm3] X_10297058_SNP [dm6]	A	T	9.208e^-5	0.974	INTRON alpha-Man-I
2L	3772355	2L_3772355_SNP [dm3] 2L_3772355_SNP [dm6]	C	T	9.459e^-5	0.974	INTRON bowl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
2L	17705285	2L_17705285_SNP [dm3] 2L_17705285_SNP [dm6]	C	G	9.503e^-5	0.974	UTR_3_PRIME CG43231 INTRON CadN
3L	18494408	3L_18494408_SNP [dm3] 3L_18501308_SNP [dm6]	T	A	9.867e^-5	0.974	INTRON AstC-R2
3R	20132454	3R_20132454_SNP [dm3] 3R_24306732_SNP [dm6]	C	T	9.935e^-5	0.974	SYNONYMOUS_CODING crb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	6734165	2R_6734165_SNP [dm3] 2R_10846660_SNP [dm6]	C	T	9.943e^-5	0.974	INTRON CG30015
3R	27340107	3R_27340107_SNP [dm3] 3R_31514385_SNP [dm6]	A	T	1.049e^-4	0.974	INTERGENIC
3L	10066858	3L_10066858_SNP [dm3] 3L_10073758_SNP [dm6]	C	T	1.051e^-4	0.974	INTRON dpr6
3L	10066897	3L_10066897_SNP [dm3] 3L_10073797_SNP [dm6]	C	T	1.051e^-4	0.974	INTRON dpr6
3R	23405689	3R_23405689_SNP [dm3] 3R_27579967_SNP [dm6]	G	T	1.064e^-4	0.974	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	3778487	2R_3778487_SNP [dm3] 2R_7890982_SNP [dm6]	C	G	1.073e^-4	0.974	INTRON CG30377
3R	18691256	3R_18691256_SNP [dm3] 3R_22865534_SNP [dm6]	T	C	1.075e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	23441267	3R_23441267_SNP [dm3] 3R_27615545_SNP [dm6]	G	A	1.076e^-4	0.974	INTRON Tusp
X	19029782	X_19029782_SNP [dm3] X_19135749_SNP [dm6]	T	C	1.078e^-4	0.974	DOWNSTREAM RhoGAP18B INTRON Obp18a
3L	13176703	3L_13176703_SNP [dm3] 3L_13183603_SNP [dm6]	A	T	1.103e^-4	0.974	INTERGENIC
3L	14845597	3L_14845597_INS [dm3] 3L_14852497_INS [dm6]	A	AA	1.108e^-4	0.974	INTRON CG17839
2R	6734224	2R_6734224_DEL [dm3] 2R_10846719_DEL [dm6]	TATTGT	T	1.108e^-4	0.974	INTRON CG30015
3L	12007278	3L_12007278_INS [dm3] 3L_12014178_INS [dm6]	G	GG	1.121e^-4	0.974	INTRON rols
3R	11467545	3R_11467545_SNP [dm3] 3R_15641823_SNP [dm6]	C	G	1.126e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14031122	3R_14031122_SNP [dm3] 3R_18205400_SNP [dm6]	C	T	1.128e^-4	0.974	INTRON CG7985
2R	9837483	2R_9837483_SNP [dm3] 2R_13949978_SNP [dm6]	G	A	1.130e^-4	0.974	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	18755217	3R_18755217_SNP [dm3] 3R_22929495_SNP [dm6]	T	A	1.133e^-4	0.974	INTRON klg
2R	14844378	2R_14844378_SNP [dm3] 2R_18956873_SNP [dm6]	A	C	1.134e^-4	0.974	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20335235	X_20335235_SNP [dm3] X_20464208_SNP [dm6]	G	A	1.156e^-4	0.974	SYNONYMOUS_CODING CG32506
2R	5687275	2R_5687275_SNP [dm3] 2R_9799770_SNP [dm6]	A	C	1.164e^-4	0.974	INTRON CG1688
3L	6924977	3L_6924977_SNP [dm3] 3L_6931877_SNP [dm6]	A	T	1.201e^-4	0.974	SYNONYMOUS_CODING CG45413
3R	22715372	3R_22715372_SNP [dm3] 3R_26889650_SNP [dm6]	A	G	1.208e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	9562044	3R_9562044_SNP [dm3] 3R_13736322_SNP [dm6]	A	C	1.224e^-4	0.974	INTRON CG34383
2L	8772925	2L_8772925_SNP [dm3] 2L_8772925_SNP [dm6]	C	A	1.258e^-4	0.974	UPSTREAM CG9465 DOWNSTREAM CG9466 INTERGENIC
3R	9951663	3R_9951663_SNP [dm3] 3R_14125941_SNP [dm6]	G	A	1.263e^-4	0.974	UTR_5_PRIME RpII140 UPSTREAM 140up	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	24844973	3R_24844973_SNP [dm3] 3R_29019251_SNP [dm6]	G	T	1.270e^-4	0.974	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18692482	3R_18692482_SNP [dm3] 3R_22866760_SNP [dm6]	T	C	1.297e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	3143301	3R_3143301_SNP [dm3] 3R_7317579_SNP [dm6]	C	G	1.302e^-4	0.974	UPSTREAM CG10029 INTERGENIC	transposable element FlyBase
2L	17705273	2L_17705273_SNP [dm3] 2L_17705273_SNP [dm6]	C	A	1.310e^-4	0.974	UTR_3_PRIME CG43231 INTRON CadN
2L	1299553	2L_1299553_SNP [dm3] 2L_1299553_SNP [dm6]	T	G	1.312e^-4	0.974	INTERGENIC
2R	6682350	2R_6682350_SNP [dm3] 2R_10794845_SNP [dm6]	A	G	1.338e^-4	0.974	INTRON CG33144
2L	8900552	2L_8900552_SNP [dm3] 2L_8900552_SNP [dm6]	A	T	1.348e^-4	0.974	INTRON CG34398
3R	22715364	3R_22715364_SNP [dm3] 3R_26889642_SNP [dm6]	A	T	1.371e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	27338577	3R_27338577_SNP [dm3] 3R_31512855_SNP [dm6]	C	G	1.381e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_Trl
X	12587966	X_12587966_SNP [dm3] X_12693933_SNP [dm6]	A	G	1.403e^-4	0.974	INTRON Smr	TF binding site mE1_TFBS_inv
3R	22715106	3R_22715106_SNP [dm3] 3R_26889384_SNP [dm6]	G	T	1.407e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	11577135	3L_11577135_SNP [dm3] 3L_11584035_SNP [dm6]	T	C	1.412e^-4	0.974	UTR_5_PRIME CG32086 DOWNSTREAM rt
3L	12981930	3L_12981930_SNP [dm3] 3L_12988830_SNP [dm6]	C	T	1.419e^-4	0.974	INTERGENIC
X	7228295	X_7228295_SNP [dm3] X_7334262_SNP [dm6]	G	T	1.434e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7228308	X_7228308_SNP [dm3] X_7334275_SNP [dm6]	A	G	1.434e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	767821	3L_767821_SNP [dm3] 3L_767821_SNP [dm6]	A	G	1.436e^-4	0.974	INTERGENIC
3R	18090618	3R_18090618_SNP [dm3] 3R_22264896_SNP [dm6]	T	G	1.483e^-4	0.974	INTRON SKIP
3R	26085542	3R_26085542_DEL [dm3] 3R_30259820_DEL [dm6]	AA	A	1.498e^-4	0.974	INTERGENIC
2L	15992598	2L_15992598_SNP [dm3] 2L_15992598_SNP [dm6]	C	T	1.498e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23548975	3R_23548975_SNP [dm3] 3R_27723253_SNP [dm6]	G	T	1.501e^-4	0.974	INTERGENIC
3L	13176405	3L_13176405_SNP [dm3] 3L_13183305_SNP [dm6]	A	G	1.514e^-4	0.974	INTERGENIC
3R	25800089	3R_25800089_SNP [dm3] 3R_29974367_SNP [dm6]	G	A	1.516e^-4	0.974	INTERGENIC
3L	10282304	3L_10282304_SNP [dm3] 3L_10289204_SNP [dm6]	C	A	1.524e^-4	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	18971934	3R_18971934_SNP [dm3] 3R_23146212_SNP [dm6]	G	T	1.546e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18972023	3R_18972023_SNP [dm3] 3R_23146301_SNP [dm6]	T	A	1.547e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15847816	3L_15847816_SNP [dm3] 3L_15854716_SNP [dm6]	A	G	1.575e^-4	0.974	INTRON pHCl
3R	21391361	3R_21391361_SNP [dm3] 3R_25565639_SNP [dm6]	A	G	1.583e^-4	0.974	INTRON msi
2R	10188541	2R_10188541_SNP [dm3] 2R_14301036_SNP [dm6]	G	A	1.587e^-4	0.974	SYNONYMOUS_CODING tej DOWNSTREAM Ih
3L	22849110	3L_22849110_SNP [dm3] 3L_22856010_SNP [dm6]	C	T	1.606e^-4	0.974	UTR_5_PRIME CG32459
3R	22753001	3R_22753001_SNP [dm3] 3R_26927279_SNP [dm6]	C	A	1.611e^-4	0.974	INTRON sda
3R	21390277	3R_21390277_SNP [dm3] 3R_25564555_SNP [dm6]	G	T	1.614e^-4	0.974	INTRON msi
2L	10519812	2L_10519812_SNP [dm3] 2L_10519812_SNP [dm6]	G	A	1.637e^-4	0.974	DOWNSTREAM Lrr47 INTERGENIC
2L	8897865	2L_8897865_SNP [dm3] 2L_8897865_SNP [dm6]	C	T	1.644e^-4	0.974	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	15940486	2R_15940486_DEL [dm3] 2R_20052981_DEL [dm6]	GCGCTTGACGAAAA...	G	1.700e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	10396635	3L_10396635_SNP [dm3] 3L_10403535_SNP [dm6]	T	C	1.700e^-4	0.974	INTERGENIC
2L	3730279	2L_3730279_SNP [dm3] 2L_3730279_SNP [dm6]	C	A	1.710e^-4	0.974	UPSTREAM CG10019 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10192672	2R_10192672_SNP [dm3] 2R_14305167_SNP [dm6]	G	C	1.712e^-4	0.974	INTERGENIC
3R	18954487	3R_18954487_SNP [dm3] 3R_23128765_SNP [dm6]	A	C	1.730e^-4	0.974	SYNONYMOUS_CODING hh UPSTREAM CG31457	TF binding site mE1_TFBS_cad
2L	5866473	2L_5866473_SNP [dm3] 2L_5866473_SNP [dm6]	G	T	1.737e^-4	0.974	INTRON rau
3R	9648660	3R_9648660_SNP [dm3] 3R_13822938_SNP [dm6]	G	C	1.743e^-4	0.974	INTERGENIC
3R	25597629	3R_25597629_SNP [dm3] 3R_29771907_SNP [dm6]	A	G	1.745e^-4	0.974	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14106606	2R_14106606_SNP [dm3] 2R_18219101_SNP [dm6]	A	T	1.746e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	15025609	2L_15025609_SNP [dm3] 2L_15025609_SNP [dm6]	C	T	1.773e^-4	0.974	SPLICE_SITE_REGION GABA-B-R1 INTRON GABA-B-R1	TF binding site mE1_TFBS_inv
2R	19698229	2R_19698229_SNP [dm3] 2R_23810706_SNP [dm6]	G	T	1.837e^-4	0.974	NON_SYNONYMOUS_CODING CG5543 DOWNSTREAM Nxt1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_sens
3L	12883347	3L_12883347_SNP [dm3] 3L_12890247_SNP [dm6]	G	A	1.848e^-4	0.974	SYNONYMOUS_CODING CG43894 UPSTREAM CR45748
3L	12883362	3L_12883362_SNP [dm3] 3L_12890262_SNP [dm6]	G	A	1.848e^-4	0.974	SYNONYMOUS_CODING CG43894 UPSTREAM CR45748
3L	14552633	3L_14552633_SNP [dm3] 3L_14559533_SNP [dm6]	G	A	1.861e^-4	0.974	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC
3L	14552660	3L_14552660_SNP [dm3] 3L_14559560_SNP [dm6]	A	T	1.861e^-4	0.974	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5465215	3L_5465215_SNP [dm3] 3L_5472115_SNP [dm6]	A	G	1.868e^-4	0.974	INTERGENIC
X	10044631	X_10044631_SNP [dm3] X_10150598_SNP [dm6]	C	T	1.896e^-4	0.974	INTRON CR44894
2R	13881893	2R_13881893_SNP [dm3] 2R_17994388_SNP [dm6]	A	T	1.898e^-4	0.974	INTRON dpr13
X	19072995	X_19072995_SNP [dm3] X_19178962_SNP [dm6]	T	C	1.906e^-4	0.974	INTRON CG7556	TF binding site BDTNP1_TFBS_dl
2R	13724199	2R_13724199_SNP [dm3] 2R_17836694_SNP [dm6]	T	A	1.914e^-4	0.974	INTRON grh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	26151366	3R_26151366_SNP [dm3] 3R_30325644_SNP [dm6]	T	A	1.932e^-4	0.974	INTRON hdc	TF binding site mE1_TFBS_chinmo
3R	26151369	3R_26151369_INS [dm3] 3R_30325647_INS [dm6]	T	TC	1.932e^-4	0.974	INTRON hdc	TF binding site mE1_TFBS_chinmo
3L	18494406	3L_18494406_SNP [dm3] 3L_18501306_SNP [dm6]	A	G	1.933e^-4	0.974	INTRON AstC-R2
2R	15942048	2R_15942048_SNP [dm3] 2R_20054543_SNP [dm6]	C	A	1.942e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15942197	2R_15942197_SNP [dm3] 2R_20054692_SNP [dm6]	C	T	1.942e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1401541	3L_1401541_SNP [dm3] 3L_1401541_SNP [dm6]	C	A	1.946e^-4	0.974	UTR_3_PRIME CG32320 UPSTREAM tRNA:E4:62Ae DOWNSTREAM tRNA:E4:62Ad INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	26187167	3R_26187167_SNP [dm3] 3R_30361445_SNP [dm6]	A	T	1.963e^-4	0.974	NON_SYNONYMOUS_CODING hdc UTR_3_PRIME hdc	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	16005700	2L_16005700_SNP [dm3] 2L_16005700_SNP [dm6]	G	A	1.988e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3R	9953469	3R_9953469_SNP [dm3] 3R_14127747_SNP [dm6]	T	C	2.011e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
3R	26934369	3R_26934369_SNP [dm3] 3R_31108647_SNP [dm6]	C	T	2.051e^-4	0.974	NON_SYNONYMOUS_CODING CG11318	TF binding site mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
3R	20401590	3R_20401590_SNP [dm3] 3R_24575868_SNP [dm6]	A	C	2.053e^-4	0.974	INTRON CG13624
3R	1674363	3R_1674363_SNP [dm3] 3R_5848641_SNP [dm6]	A	T	2.062e^-4	0.974	UPSTREAM CR10991 DOWNSTREAM CG14676 INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	5866396	2L_5866396_SNP [dm3] 2L_5866396_SNP [dm6]	T	C	2.084e^-4	0.974	INTRON rau
3R	18689410	3R_18689410_SNP [dm3] 3R_22863688_SNP [dm6]	A	C	2.095e^-4	0.974	INTERGENIC
3L	1752948	3L_1752948_SNP [dm3] 3L_1752948_SNP [dm6]	A	T	2.096e^-4	0.974	SYNONYMOUS_CODING Cht2 DOWNSTREAM CG13921	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2044373	3R_2044373_SNP [dm3] 3R_6218651_SNP [dm6]	C	T	2.096e^-4	0.974	DOWNSTREAM Osi3 INTRON Osi4
3R	2045407	3R_2045407_SNP [dm3] 3R_6219685_SNP [dm6]	C	T	2.096e^-4	0.974	NON_SYNONYMOUS_CODING Osi4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2052626	3R_2052626_SNP [dm3] 3R_6226904_SNP [dm6]	T	A	2.096e^-4	0.974	UPSTREAM Osi5 INTERGENIC
3L	763626	3L_763626_SNP [dm3] 3L_763626_SNP [dm6]	A	G	2.101e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	19947741	2R_19947741_SNP [dm3] 2R_24060218_SNP [dm6]	A	C	2.133e^-4	0.974	UPSTREAM RpL12 & 1 other DOWNSTREAM eIF-5A INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2R	9837202	2R_9837202_SNP [dm3] 2R_13949697_SNP [dm6]	C	G	2.142e^-4	0.974	SYNONYMOUS_CODING AGO1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	6740189	2R_6740189_SNP [dm3] 2R_10852684_SNP [dm6]	T	C	2.149e^-4	0.974	UPSTREAM CR45136 INTRON CG30015
3R	18953204	3R_18953204_SNP [dm3] 3R_23127482_SNP [dm6]	T	G	2.186e^-4	0.974	NON_SYNONYMOUS_CODING CG31457 DOWNSTREAM hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18953219	3R_18953219_SNP [dm3] 3R_23127497_SNP [dm6]	C	A	2.186e^-4	0.974	NON_SYNONYMOUS_CODING CG31457 DOWNSTREAM hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	17058074	3L_17058074_SNP [dm3] 3L_17064974_SNP [dm6]	G	A	2.190e^-4	0.974	UTR_3_PRIME Rbp6 DOWNSTREAM Rbp6
2R	13882570	2R_13882570_SNP [dm3] 2R_17995065_SNP [dm6]	C	A	2.209e^-4	0.974	INTRON dpr13
2R	17738345	2R_17738345_SNP [dm3] 2R_21850840_SNP [dm6]	A	T	2.244e^-4	0.974	INTERGENIC
2L	10118445	2L_10118445_SNP [dm3] 2L_10118445_SNP [dm6]	T	A	2.252e^-4	0.974	INTRON CG44153 & 1 other	transposable element FlyBase
3L	11787846	3L_11787846_SNP [dm3] 3L_11794746_SNP [dm6]	T	A	2.257e^-4	0.974	UPSTREAM Klp68D INTRON CG10907
3L	11787891	3L_11787891_SNP [dm3] 3L_11794791_SNP [dm6]	T	C	2.257e^-4	0.974	SPLICE_SITE_REGION CG10907 UPSTREAM Klp68D INTRON CG10907
2R	15543619	2R_15543619_SNP [dm3] 2R_19656114_SNP [dm6]	C	A	2.271e^-4	0.974	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6450848	3L_6450848_DEL [dm3] 3L_6457748_DEL [dm6]	CC	G	2.273e^-4	0.974	INTRON CG42747	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8318244	2R_8318244_SNP [dm3] 2R_12430739_SNP [dm6]	T	G	2.276e^-4	0.974	DOWNSTREAM DUBAI INTRON Nup54 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	19461876	3L_19461876_SNP [dm3] 3L_19468776_SNP [dm6]	T	G	2.288e^-4	0.974	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
3L	5321722	3L_5321722_SNP [dm3] 3L_5328622_SNP [dm6]	A	T	2.299e^-4	0.974	INTERGENIC
3L	5321772	3L_5321772_SNP [dm3] 3L_5328672_SNP [dm6]	T	C	2.299e^-4	0.974	INTERGENIC
3L	3943314	3L_3943314_SNP [dm3] 3L_3943314_SNP [dm6]	G	A	2.309e^-4	0.974	UPSTREAM CG10863 INTRON CG14982	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo
3R	4055667	3R_4055667_SNP [dm3] 3R_8229945_SNP [dm6]	C	T	2.315e^-4	0.974	DOWNSTREAM CR45550 EXON CR45551
2R	14844383	2R_14844383_SNP [dm3] 2R_18956878_SNP [dm6]	T	G	2.318e^-4	0.974	SYNONYMOUS_CODING sano	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	1664977	2L_1664977_SNP [dm3] 2L_1664977_SNP [dm6]	A	G	2.338e^-4	0.974	INTRON chinmo
2R	6441601	2R_6441601_DEL [dm3] 2R_10554096_DEL [dm6]	AAA	A	2.339e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	25799798	3R_25799798_SNP [dm3] 3R_29974076_SNP [dm6]	T	A	2.349e^-4	0.974	INTERGENIC
3R	26685955	3R_26685955_SNP [dm3] 3R_30860233_SNP [dm6]	T	C	2.383e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	10211367	3L_10211367_SNP [dm3] 3L_10218267_SNP [dm6]	A	T	2.393e^-4	0.974	DOWNSTREAM CG32055 INTERGENIC
3R	26530984	3R_26530984_SNP [dm3] 3R_30705262_SNP [dm6]	C	G	2.398e^-4	0.974	NON_SYNONYMOUS_CODING CG31010	TF binding site mE1_TFBS_HSA
3L	20563691	3L_20563691_SNP [dm3] 3L_20570591_SNP [dm6]	G	A	2.407e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26077944	3R_26077944_SNP [dm3] 3R_30252222_SNP [dm6]	G	A	2.407e^-4	0.974	NON_SYNONYMOUS_CODING CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	27125262	3R_27125262_SNP [dm3] 3R_31299540_SNP [dm6]	C	G	2.407e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	5322073	3L_5322073_SNP [dm3] 3L_5328973_SNP [dm6]	C	G	2.458e^-4	0.974	INTERGENIC
3L	10401838	3L_10401838_SNP [dm3] 3L_10408738_SNP [dm6]	G	A	2.468e^-4	0.974	INTERGENIC
3L	10066928	3L_10066928_SNP [dm3] 3L_10073828_SNP [dm6]	A	G	2.481e^-4	0.974	INTRON dpr6
3R	24518365	3R_24518365_SNP [dm3] 3R_28692643_SNP [dm6]	T	C	2.500e^-4	0.974	SYNONYMOUS_CODING CG9990	TF binding site mE1_TFBS_cad
3R	18754786	3R_18754786_SNP [dm3] 3R_22929064_SNP [dm6]	C	A	2.506e^-4	0.974	INTRON klg
3R	24992208	3R_24992208_INS [dm3] 3R_29166486_INS [dm6]	T	TAT	2.526e^-4	0.974	INTRON CG11898	TF binding site mE1_TFBS_chinmo
X	7228306	X_7228306_SNP [dm3] X_7334273_SNP [dm6]	G	C	2.541e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7228319	X_7228319_SNP [dm3] X_7334286_SNP [dm6]	T	A	2.541e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
X	7228321	X_7228321_SNP [dm3] X_7334288_SNP [dm6]	C	T	2.541e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	25538294	3R_25538294_SNP [dm3] 3R_29712572_SNP [dm6]	A	C	2.565e^-4	0.974	DOWNSTREAM CR45569 INTERGENIC
3L	10529489	3L_10529489_SNP [dm3] 3L_10536389_SNP [dm6]	A	G	2.577e^-4	0.974	INTRON A2bp1	TF binding site BDTNP1_TFBS_dl
2L	17305603	2L_17305603_SNP [dm3] 2L_17305603_SNP [dm6]	C	T	2.593e^-4	0.974	INTERGENIC
3R	17212504	3R_17212504_SNP [dm3] 3R_21386782_SNP [dm6]	T	G	2.596e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	9953514	3R_9953514_SNP [dm3] 3R_14127792_SNP [dm6]	C	T	2.599e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
2L	5407524	2L_5407524_SNP [dm3] 2L_5407524_SNP [dm6]	A	T	2.619e^-4	0.974	INTRON H15	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	18690738	3R_18690738_SNP [dm3] 3R_22865016_SNP [dm6]	C	G	2.632e^-4	0.974	INTERGENIC
2R	15943450	2R_15943450_SNP [dm3] 2R_20055945_SNP [dm6]	C	T	2.633e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13367301	3L_13367301_SNP [dm3] 3L_13374201_SNP [dm6]	C	A	2.637e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	17210259	3R_17210259_INS [dm3] 3R_21384537_INS [dm6]	T	TTACCTGCAAT...	2.641e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs
2L	3214933	2L_3214933_SNP [dm3] 2L_3214933_SNP [dm6]	C	T	2.672e^-4	0.974	INTERGENIC
3R	23419435	3R_23419435_SNP [dm3] 3R_27593713_SNP [dm6]	A	G	2.685e^-4	0.974	INTRON CG5639	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	22443153	3R_22443153_SNP [dm3] 3R_26617431_SNP [dm6]	C	G	2.711e^-4	0.974	INTERGENIC
2R	18453077	2R_18453077_SNP [dm3] 2R_22565572_SNP [dm6]	G	A	2.715e^-4	0.974	INTRON dnr1
2R	18453082	2R_18453082_SNP [dm3] 2R_22565577_SNP [dm6]	T	A	2.715e^-4	0.974	INTRON dnr1
3R	24551660	3R_24551660_SNP [dm3] 3R_28725938_SNP [dm6]	C	A	2.724e^-4	0.974	INTRON htt
X	8856724	X_8856724_SNP [dm3] X_8962691_SNP [dm6]	A	G	2.724e^-4	0.974	INTRON rdgA
3R	25597625	3R_25597625_SNP [dm3] 3R_29771903_SNP [dm6]	A	T	2.740e^-4	0.974	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	15543132	2R_15543132_SNP [dm3] 2R_19655627_SNP [dm6]	G	T	2.742e^-4	0.974	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3L	10480178	3L_10480178_SNP [dm3] 3L_10487078_SNP [dm6]	T	C	2.746e^-4	0.974	INTRON A2bp1
3R	9953274	3R_9953274_SNP [dm3] 3R_14127552_SNP [dm6]	C	T	2.755e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
3R	25798663	3R_25798663_SNP [dm3] 3R_29972941_SNP [dm6]	T	G	2.759e^-4	0.974	INTERGENIC
2R	13389277	2R_13389277_SNP [dm3] 2R_17501772_SNP [dm6]	T	C	2.776e^-4	0.974	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389283	2R_13389283_SNP [dm3] 2R_17501778_SNP [dm6]	A	C	2.776e^-4	0.974	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389285	2R_13389285_DEL [dm3] 2R_17501780_DEL [dm6]	AAG	T	2.776e^-4	0.974	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	13389289	2R_13389289_SNP [dm3] 2R_17501784_SNP [dm6]	A	C	2.776e^-4	0.974	UPSTREAM CG43164 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	25417164	3R_25417164_SNP [dm3] 3R_29591442_SNP [dm6]	T	C	2.800e^-4	0.974	UPSTREAM alph & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
2R	15544025	2R_15544025_DEL [dm3] 2R_19656520_DEL [dm6]	TGAAT	T	2.815e^-4	0.974	EXON CR44214
3L	13176579	3L_13176579_SNP [dm3] 3L_13183479_SNP [dm6]	T	A	2.837e^-4	0.974	INTERGENIC
2L	5866496	2L_5866496_SNP [dm3] 2L_5866496_SNP [dm6]	G	T	2.837e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da
2R	6682225	2R_6682225_SNP [dm3] 2R_10794720_SNP [dm6]	A	T	2.852e^-4	0.974	INTRON CG33144
2R	19182427	2R_19182427_SNP [dm3] 2R_23294904_SNP [dm6]	A	C	2.870e^-4	0.974	INTERGENIC
3R	20341445	3R_20341445_SNP [dm3] 3R_24515723_SNP [dm6]	A	T	2.899e^-4	0.974	UPSTREAM nAChRbeta2 INTRON CG13617	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22443152	3R_22443152_SNP [dm3] 3R_26617430_SNP [dm6]	T	C	2.901e^-4	0.974	INTERGENIC
2R	15542987	2R_15542987_DEL [dm3] 2R_19655482_DEL [dm6]	TGCAAGT	T	2.909e^-4	0.974	DOWNSTREAM CR44214 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
3R	27077689	3R_27077689_SNP [dm3] 3R_31251967_SNP [dm6]	T	C	2.943e^-4	0.974	START_GAINED qless UTR_5_PRIME qless UPSTREAM mRpL32	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
3R	27077694	3R_27077694_SNP [dm3] 3R_31251972_SNP [dm6]	T	G	2.943e^-4	0.974	UTR_5_PRIME qless UPSTREAM mRpL32	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1
2L	19232195	2L_19232195_SNP [dm3] 2L_19232195_SNP [dm6]	C	T	2.946e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	17505392	2L_17505392_SNP [dm3] 2L_17505392_SNP [dm6]	G	A	2.957e^-4	0.974	SYNONYMOUS_CODING Dhc36C	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	17436285	X_17436285_SNP [dm3] X_17542252_SNP [dm6]	C	G	2.961e^-4	0.974	INTRON CG43658
2R	14542958	2R_14542958_SNP [dm3] 2R_18655453_SNP [dm6]	A	G	2.980e^-4	0.974	INTRON SP2637	TF binding site BDTNP1_TFBS_prd
3R	22715296	3R_22715296_SNP [dm3] 3R_26889574_SNP [dm6]	T	A	2.990e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	26233523	3R_26233523_SNP [dm3] 3R_30407801_SNP [dm6]	G	A	2.993e^-4	0.974	INTERGENIC
2L	9418562	2L_9418562_SNP [dm3] 2L_9418562_SNP [dm6]	C	T	3.015e^-4	0.974	INTRON Mco1
2L	10118452	2L_10118452_SNP [dm3] 2L_10118452_SNP [dm6]	G	T	3.026e^-4	0.974	INTRON CG44153 & 1 other	transposable element FlyBase
3L	18255994	3L_18255994_SNP [dm3] 3L_18262894_SNP [dm6]	T	A	3.031e^-4	0.974	INTERGENIC
2L	8897212	2L_8897212_SNP [dm3] 2L_8897212_SNP [dm6]	G	C	3.046e^-4	0.974	INTERGENIC
3R	23143713	3R_23143713_SNP [dm3] 3R_27317991_SNP [dm6]	G	A	3.066e^-4	0.974	SYNONYMOUS_CODING CG3339 UPSTREAM CR44287	TF binding site mE1_TFBS_chinmo
2R	18418427	2R_18418427_SNP [dm3] 2R_22530922_SNP [dm6]	A	T	3.078e^-4	0.974	INTRON px
2R	13762335	2R_13762335_SNP [dm3] 2R_17874830_SNP [dm6]	C	T	3.079e^-4	0.974	INTRON Elk
2R	4312533	2R_4312533_SNP [dm3] 2R_8425028_SNP [dm6]	G	A	3.085e^-4	0.974	INTRON CSN7	TF binding site mE1_TFBS_chinmo
3L	10333365	3L_10333365_SNP [dm3] 3L_10340265_SNP [dm6]	A	G	3.090e^-4	0.974	INTERGENIC
3R	17211286	3R_17211286_SNP [dm3] 3R_21385564_SNP [dm6]	T	A	3.120e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2L	1963441	2L_1963441_SNP [dm3] 2L_1963441_SNP [dm6]	G	A	3.133e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1963454	2L_1963454_SNP [dm3] 2L_1963454_SNP [dm6]	T	G	3.133e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	17218171	2L_17218171_SNP [dm3] 2L_17218171_SNP [dm6]	A	G	3.135e^-4	0.974	INTRON beat-IIIc
2L	16005646	2L_16005646_SNP [dm3] 2L_16005646_SNP [dm6]	C	G	3.150e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	9666620	3L_9666620_SNP [dm3] 3L_9673520_SNP [dm6]	G	A	3.166e^-4	0.974	INTRON fry
X	2469590	X_2469590_SNP [dm3] X_2575557_SNP [dm6]	A	G	3.177e^-4	0.974	SPLICE_SITE_REGION Pdfr SYNONYMOUS_CODING Pdfr
2R	15536515	2R_15536515_SNP [dm3] 2R_19649010_SNP [dm6]	A	C	3.185e^-4	0.974	INTERGENIC
3R	18953203	3R_18953203_SNP [dm3] 3R_23127481_SNP [dm6]	T	G	3.248e^-4	0.974	NON_SYNONYMOUS_CODING CG31457 DOWNSTREAM hh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3R	18739099	3R_18739099_SNP [dm3] 3R_22913377_SNP [dm6]	A	T	3.264e^-4	0.974	INTRON klg
3R	22597913	3R_22597913_SNP [dm3] 3R_26772191_SNP [dm6]	A	C	3.268e^-4	0.974	INTERGENIC
2R	9441581	2R_9441581_DEL [dm3] 2R_13554076_DEL [dm6]	AC	A	3.290e^-4	0.974	UTR_5_PRIME Roe1 UPSTREAM CG33156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
2R	9441586	2R_9441586_SNP [dm3] 2R_13554081_SNP [dm6]	T	A	3.290e^-4	0.974	UTR_5_PRIME Roe1 UPSTREAM CG33156	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h
2L	18040870	2L_18040870_SNP [dm3] 2L_18040870_SNP [dm6]	A	G	3.300e^-4	0.974	INTRON rdo
3R	25222400	3R_25222400_SNP [dm3] 3R_29396678_SNP [dm6]	G	A	3.306e^-4	0.974	INTRON Ptp99A
2L	1633548	2L_1633548_DEL [dm3] 2L_1633548_DEL [dm6]	AA	A	3.319e^-4	0.974	INTERGENIC
2L	5866480	2L_5866480_SNP [dm3] 2L_5866480_SNP [dm6]	A	G	3.328e^-4	0.974	INTRON rau	TF binding site BDTNP1_TFBS_da
3L	11727562	3L_11727562_SNP [dm3] 3L_11734462_SNP [dm6]	G	A	3.334e^-4	0.974	UTR_3_PRIME CG6024 DOWNSTREAM CG32087
3R	27459360	3R_27459360_SNP [dm3] 3R_31633638_SNP [dm6]	G	C	3.338e^-4	0.974	INTRON kek6
2R	20114241	2R_20114241_SNP [dm3] 2R_24226718_SNP [dm6]	A	G	3.348e^-4	0.974	INTRON CG30419
3L	20065374	3L_20065374_SNP [dm3] 3L_20072274_SNP [dm6]	T	C	3.362e^-4	0.974	INTRON sNPF-R
3L	18246289	3L_18246289_SNP [dm3] 3L_18253189_SNP [dm6]	G	A	3.365e^-4	0.974	DOWNSTREAM CheA75a INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	11950497	X_11950497_SNP [dm3] X_12056464_SNP [dm6]	G	A	3.370e^-4	0.974	NON_SYNONYMOUS_CODING Uch-L5R INTRON CR43960 & 1 other
2L	21793513	2L_21793513_SNP [dm3] 2L_21793513_SNP [dm6]	T	A	3.370e^-4	0.974	INTRON CG31612	TF binding site BDTNP1_TFBS_z
2L	21793557	2L_21793557_SNP [dm3] 2L_21793557_SNP [dm6]	G	T	3.370e^-4	0.974	INTRON CG31612	TF binding site BDTNP1_TFBS_z
3L	14842629	3L_14842629_SNP [dm3] 3L_14849529_SNP [dm6]	G	A	3.373e^-4	0.974	INTRON CG17839
3L	8444765	3L_8444765_SNP [dm3] 3L_8451665_SNP [dm6]	T	A	3.381e^-4	0.974	INTRON Gug	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve
3L	10480443	3L_10480443_SNP [dm3] 3L_10487343_SNP [dm6]	A	G	3.399e^-4	0.974	INTRON A2bp1
3R	25806040	3R_25806040_SNP [dm3] 3R_29980318_SNP [dm6]	G	C	3.399e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	12353023	2L_12353023_SNP [dm3] 2L_12353023_SNP [dm6]	T	A	3.402e^-4	0.974	INTRON bru-2	TF binding site BDTNP1_TFBS_dl
2L	16867855	2L_16867855_SNP [dm3] 2L_16867855_SNP [dm6]	A	C	3.410e^-4	0.974	INTERGENIC
2L	8896002	2L_8896002_SNP [dm3] 2L_8896002_SNP [dm6]	G	A	3.455e^-4	0.974	INTERGENIC
2L	8896028	2L_8896028_SNP [dm3] 2L_8896028_SNP [dm6]	T	A	3.455e^-4	0.974	INTERGENIC
3L	5322320	3L_5322320_SNP [dm3] 3L_5329220_SNP [dm6]	A	G	3.474e^-4	0.974	INTERGENIC
2R	10018799	2R_10018799_DEL [dm3] 2R_14131294_DEL [dm6]	TT	T	3.475e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11247371	3L_11247371_SNP [dm3] 3L_11254271_SNP [dm6]	G	A	3.502e^-4	0.974	SYNONYMOUS_CODING scyl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	5459056	X_5459056_SNP [dm3] X_5565023_SNP [dm6]	C	G	3.504e^-4	0.974	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl
2L	12333368	2L_12333368_SNP [dm3] 2L_12333368_SNP [dm6]	A	G	3.543e^-4	0.974	INTERGENIC
2L	12333370	2L_12333370_SNP [dm3] 2L_12333370_SNP [dm6]	T	G	3.543e^-4	0.974	INTERGENIC
3R	23225583	3R_23225583_SNP [dm3] 3R_27399861_SNP [dm6]	G	A	3.548e^-4	0.974	INTRON side	TF binding site mE1_TFBS_chinmo
3R	25829921	3R_25829921_SNP [dm3] 3R_30004199_SNP [dm6]	A	C	3.564e^-4	0.974	UPSTREAM Nlp DOWNSTREAM Tace INTRON CG7911	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	25031811	3R_25031811_SNP [dm3] 3R_29206089_SNP [dm6]	G	T	3.567e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	5025710	2L_5025710_SNP [dm3] 2L_5025710_SNP [dm6]	G	A	3.577e^-4	0.974	INTRON vkg	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	26487695	3R_26487695_SNP [dm3] 3R_30661973_SNP [dm6]	T	C	3.579e^-4	0.974	INTERGENIC
2R	17831213	2R_17831213_SNP [dm3] 2R_21943708_SNP [dm6]	G	A	3.582e^-4	0.974	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17212624	3R_17212624_SNP [dm3] 3R_21386902_SNP [dm6]	A	G	3.582e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3R	9648638	3R_9648638_SNP [dm3] 3R_13822916_SNP [dm6]	T	A	3.605e^-4	0.974	INTERGENIC
3R	9648647	3R_9648647_SNP [dm3] 3R_13822925_SNP [dm6]	T	A	3.605e^-4	0.974	INTERGENIC
3L	13553907	3L_13553907_SNP [dm3] 3L_13560807_SNP [dm6]	G	C	3.614e^-4	0.974	INTRON bru-3
2L	16005731	2L_16005731_SNP [dm3] 2L_16005731_SNP [dm6]	A	G	3.615e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	22849177	3L_22849177_SNP [dm3] 3L_22856077_SNP [dm6]	A	G	3.617e^-4	0.974	UPSTREAM CG32459 INTERGENIC
2R	18109209	2R_18109209_SNP [dm3] 2R_22221704_SNP [dm6]	G	A	3.631e^-4	0.974	SYNONYMOUS_CODING Oatp58Db UPSTREAM Oatp58Da	TF binding site mE1_TFBS_sens
2R	15541640	2R_15541640_SNP [dm3] 2R_19654135_SNP [dm6]	C	T	3.678e^-4	0.974	DOWNSTREAM CR44213 INTERGENIC
3R	10233113	3R_10233113_DEL [dm3] 3R_14407391_DEL [dm6]	AG	A	3.707e^-4	0.974	INTRON cv-c
3R	10233116	3R_10233116_SNP [dm3] 3R_14407394_SNP [dm6]	T	A	3.707e^-4	0.974	INTRON cv-c
3R	10233121	3R_10233121_SNP [dm3] 3R_14407399_SNP [dm6]	G	T	3.707e^-4	0.974	INTRON cv-c
3R	10233128	3R_10233128_SNP [dm3] 3R_14407406_SNP [dm6]	A	T	3.707e^-4	0.974	INTRON cv-c
3R	1811794	3R_1811794_SNP [dm3] 3R_5986072_SNP [dm6]	T	G	3.734e^-4	0.974	INTERGENIC
3R	1811810	3R_1811810_SNP [dm3] 3R_5986088_SNP [dm6]	C	A	3.734e^-4	0.974	INTERGENIC
2R	18209091	2R_18209091_SNP [dm3] 2R_22321586_SNP [dm6]	C	T	3.741e^-4	0.974	UPSTREAM CR44756 INTRON Gp150	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	9381224	2R_9381224_SNP [dm3] 2R_13493719_SNP [dm6]	C	T	3.743e^-4	0.974	INTRON bbc
3R	23679828	3R_23679828_SNP [dm3] 3R_27854106_SNP [dm6]	C	T	3.753e^-4	0.974	INTRON CG34353
3R	19538422	3R_19538422_SNP [dm3] 3R_23712700_SNP [dm6]	T	G	3.779e^-4	0.974	SYNONYMOUS_CODING CG10300 DOWNSTREAM nau
3R	19538425	3R_19538425_SNP [dm3] 3R_23712703_SNP [dm6]	T	C	3.779e^-4	0.974	SYNONYMOUS_CODING CG10300 DOWNSTREAM nau
3R	24452306	3R_24452306_SNP [dm3] 3R_28626584_SNP [dm6]	C	A	3.781e^-4	0.974	INTRON CG10011
2R	12548092	2R_12548092_SNP [dm3] 2R_16660587_SNP [dm6]	A	G	3.782e^-4	0.974	INTRON Picot
3L	2913994	3L_2913994_SNP [dm3] 3L_2913994_SNP [dm6]	T	C	3.806e^-4	0.974	INTRON Shab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	5618756	3L_5618756_SNP [dm3] 3L_5625656_SNP [dm6]	G	A	3.822e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1471845	X_1471845_SNP [dm3] X_1577812_SNP [dm6]	T	C	3.826e^-4	0.974	INTRON Mur2B & 1 other
2R	15412557	2R_15412557_SNP [dm3] 2R_19525052_SNP [dm6]	G	T	3.836e^-4	0.974	UTR_3_PRIME sm
3L	5320109	3L_5320109_SNP [dm3] 3L_5327009_SNP [dm6]	C	A	3.856e^-4	0.974	INTERGENIC
3L	15953912	3L_15953912_SNP [dm3] 3L_15960812_SNP [dm6]	T	G	3.858e^-4	0.974	DOWNSTREAM l_3_72Ab & 1 other INTERGENIC
3R	20025482	3R_20025482_SNP [dm3] 3R_24199760_SNP [dm6]	A	G	3.868e^-4	0.974	INTRON twin
2R	11461381	2R_11461381_SNP [dm3] 2R_15573876_SNP [dm6]	G	A	3.883e^-4	0.974	UTR_5_PRIME CG8204 UPSTREAM CG8204 DOWNSTREAM CG30466	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_ftz mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Ubx
3R	21979526	3R_21979526_SNP [dm3] 3R_26153804_SNP [dm6]	G	A	3.894e^-4	0.974	INTERGENIC
3R	15975305	3R_15975305_SNP [dm3] 3R_20149583_SNP [dm6]	G	T	3.897e^-4	0.974	INTERGENIC
2R	8513509	2R_8513509_SNP [dm3] 2R_12626004_SNP [dm6]	G	T	3.903e^-4	0.974	START_GAINED CG17760 UTR_5_PRIME CG17760 DOWNSTREAM CG30054
2R	4195600	2R_4195600_SNP [dm3] 2R_8308095_SNP [dm6]	T	C	3.955e^-4	0.974	INTERGENIC
2R	6252042	2R_6252042_SNP [dm3] 2R_10364537_SNP [dm6]	G	A	3.959e^-4	0.974	UTR_5_PRIME CG42732 DOWNSTREAM Gr47a INTRON CG42732
2R	6252043	2R_6252043_SNP [dm3] 2R_10364538_SNP [dm6]	G	T	3.959e^-4	0.974	UTR_5_PRIME CG42732 DOWNSTREAM Gr47a INTRON CG42732
3L	21832976	3L_21832976_SNP [dm3] 3L_21839876_SNP [dm6]	C	T	3.960e^-4	0.974	INTRON P5CDh1	TF binding site BDTNP1_TFBS_dl
2R	19053514	2R_19053514_SNP [dm3] 2R_23165991_SNP [dm6]	G	T	3.980e^-4	0.974	SYNONYMOUS_CODING CG34371	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12004937	3L_12004937_SNP [dm3] 3L_12011837_SNP [dm6]	T	C	3.981e^-4	0.974	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20428459	3R_20428459_SNP [dm3] 3R_24602737_SNP [dm6]	G	A	3.984e^-4	0.974	INTRON mld
2R	10018540	2R_10018540_SNP [dm3] 2R_14131035_SNP [dm6]	G	T	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018544	2R_10018544_SNP [dm3] 2R_14131039_SNP [dm6]	A	G	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018548	2R_10018548_SNP [dm3] 2R_14131043_SNP [dm6]	A	C	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018559	2R_10018559_SNP [dm3] 2R_14131054_SNP [dm6]	A	T	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018560	2R_10018560_SNP [dm3] 2R_14131055_SNP [dm6]	T	A	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018571	2R_10018571_SNP [dm3] 2R_14131066_SNP [dm6]	T	A	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018573	2R_10018573_SNP [dm3] 2R_14131068_SNP [dm6]	T	A	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018580	2R_10018580_SNP [dm3] 2R_14131075_SNP [dm6]	C	T	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018586	2R_10018586_SNP [dm3] 2R_14131081_SNP [dm6]	A	G	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018590	2R_10018590_DEL [dm3] 2R_14131085_DEL [dm6]	TAGAAT	T	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018600	2R_10018600_SNP [dm3] 2R_14131095_SNP [dm6]	T	C	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
2R	10018668	2R_10018668_SNP [dm3] 2R_14131163_SNP [dm6]	A	G	3.999e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	27300859	3R_27300859_SNP [dm3] 3R_31475137_SNP [dm6]	T	A	4.034e^-4	0.974	INTERGENIC
2R	4239446	2R_4239446_SNP [dm3] 2R_8351941_SNP [dm6]	T	C	4.040e^-4	0.974	INTRON pdm3
3L	18261037	3L_18261037_SNP [dm3] 3L_18267937_SNP [dm6]	C	T	4.047e^-4	0.974	INTERGENIC
3R	19509316	3R_19509316_SNP [dm3] 3R_23683594_SNP [dm6]	T	C	4.052e^-4	0.974	NON_SYNONYMOUS_CODING CG16710 UPSTREAM CG18754
2L	21788328	2L_21788328_SNP [dm3] 2L_21788328_SNP [dm6]	A	T	4.054e^-4	0.974	INTRON CG31612	transposable element FlyBase
3R	26038464	3R_26038464_SNP [dm3] 3R_30212742_SNP [dm6]	T	C	4.063e^-4	0.974	UPSTREAM Cec2 DOWNSTREAM Cec-Psi1 & 2 others INTERGENIC
3R	20665597	3R_20665597_INS [dm3] 3R_24839875_INS [dm6]	A	AA	4.064e^-4	0.974	UTR_3_PRIME sosie DOWNSTREAM CG33658 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	7943287	X_7943287_SNP [dm3] X_8049254_SNP [dm6]	G	A	4.069e^-4	0.974	UTR_3_PRIME fs_1_h DOWNSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
2L	19225460	2L_19225460_SNP [dm3] 2L_19225460_SNP [dm6]	A	G	4.079e^-4	0.974	INTERGENIC
2L	19225485	2L_19225485_SNP [dm3] 2L_19225485_SNP [dm6]	C	G	4.079e^-4	0.974	INTERGENIC
2L	19225488	2L_19225488_SNP [dm3] 2L_19225488_SNP [dm6]	A	T	4.079e^-4	0.974	INTERGENIC
2L	19225495	2L_19225495_SNP [dm3] 2L_19225495_SNP [dm6]	T	G	4.079e^-4	0.974	INTERGENIC
2L	9194106	2L_9194106_SNP [dm3] 2L_9194106_SNP [dm6]	G	T	4.083e^-4	0.974	INTRON tai
3R	24658939	3R_24658939_SNP [dm3] 3R_28833217_SNP [dm6]	C	T	4.084e^-4	0.974	UTR_3_PRIME Apc
2R	10775862	2R_10775862_SNP [dm3] 2R_14888357_SNP [dm6]	A	G	4.108e^-4	0.974	SYNONYMOUS_CODING Cyp6a8
3R	18703709	3R_18703709_SNP [dm3] 3R_22877987_SNP [dm6]	C	T	4.109e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3785938	3L_3785938_SNP [dm3] 3L_3785938_SNP [dm6]	T	A	4.113e^-4	0.974	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3L	665123	3L_665123_SNP [dm3] 3L_665123_SNP [dm6]	T	C	4.133e^-4	0.974	INTERGENIC
3L	665126	3L_665126_SNP [dm3] 3L_665126_SNP [dm6]	G	C	4.133e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_sens
3R	14814446	3R_14814446_SNP [dm3] 3R_18988724_SNP [dm6]	G	A	4.134e^-4	0.974	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15536786	2R_15536786_SNP [dm3] 2R_19649281_SNP [dm6]	T	C	4.137e^-4	0.974	INTERGENIC
3R	2181967	3R_2181967_SNP [dm3] 3R_6356245_SNP [dm6]	G	A	4.140e^-4	0.974	INTRON Pak
2L	5712853	2L_5712853_SNP [dm3] 2L_5712853_SNP [dm6]	T	A	4.170e^-4	0.974	SYNONYMOUS_CODING CG7236	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	3152986	2L_3152986_SNP [dm3] 2L_3152986_SNP [dm6]	A	C	4.174e^-4	0.974	UPSTREAM Mad INTRON Mad	TF binding site BDTNP1_TFBS_dl
3R	27069728	3R_27069728_SNP [dm3] 3R_31244006_SNP [dm6]	T	G	4.187e^-4	0.974	INTRON qless
3R	23196766	3R_23196766_SNP [dm3] 3R_27371044_SNP [dm6]	A	C	4.188e^-4	0.974	UTR_3_PRIME CG42534	TF binding site mE1_TFBS_chinmo
X	4625826	X_4625826_SNP [dm3] X_4731793_SNP [dm6]	A	C	4.197e^-4	0.974	INTERGENIC
2R	16973675	2R_16973675_SNP [dm3] 2R_21086170_SNP [dm6]	T	G	4.203e^-4	0.974	NON_SYNONYMOUS_CODING Treh	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8290469	2R_8290469_SNP [dm3] 2R_12402964_SNP [dm6]	C	T	4.238e^-4	0.974	INTRON Cpr49Ae
3R	5719396	3R_5719396_DEL [dm3] 3R_9893674_DEL [dm6]	TGGCCATTCAAACCGATT...	T	4.255e^-4	0.974	INTRON Glut4EF
3R	9953253	3R_9953253_SNP [dm3] 3R_14127531_SNP [dm6]	G	C	4.277e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
2R	8176932	2R_8176932_SNP [dm3] 2R_12289427_SNP [dm6]	G	A	4.280e^-4	0.974	INTRON CG42700
2L	12333331	2L_12333331_SNP [dm3] 2L_12333331_SNP [dm6]	T	C	4.288e^-4	0.974	INTERGENIC
2L	12333336	2L_12333336_SNP [dm3] 2L_12333336_SNP [dm6]	T	C	4.288e^-4	0.974	INTERGENIC
2L	9587645	2L_9587645_SNP [dm3] 2L_9587645_SNP [dm6]	T	A	4.288e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	11290385	3R_11290385_SNP [dm3] 3R_15464663_SNP [dm6]	C	T	4.290e^-4	0.974	INTRON AdamTS-A
2L	9264294	2L_9264294_SNP [dm3] 2L_9264294_SNP [dm6]	G	T	4.296e^-4	0.974	INTRON Ggamma30A
3R	23443538	3R_23443538_SNP [dm3] 3R_27617816_SNP [dm6]	T	G	4.303e^-4	0.974	INTRON Tusp	TF binding site BDTNP1_TFBS_twi
2R	8306399	2R_8306399_SNP [dm3] 2R_12418894_SNP [dm6]	C	T	4.358e^-4	0.974	DOWNSTREAM CG42782 & 2 others INTERGENIC
2R	18833999	2R_18833999_SNP [dm3] 2R_22946476_SNP [dm6]	G	C	4.361e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13911523	X_13911523_SNP [dm3] X_14017490_SNP [dm6]	A	T	4.362e^-4	0.974	DOWNSTREAM tRNA:R:12Eb & 2 others INTERGENIC
3R	18769097	3R_18769097_SNP [dm3] 3R_22943375_SNP [dm6]	A	G	4.368e^-4	0.974	INTRON klg
3L	17621401	3L_17621401_SNP [dm3] 3L_17628301_SNP [dm6]	G	A	4.390e^-4	0.974	SYNONYMOUS_CODING CG7510 DOWNSTREAM scaRNA:MeU4-A65
3R	26991951	3R_26991951_SNP [dm3] 3R_31166229_SNP [dm6]	T	C	4.390e^-4	0.974	SYNONYMOUS_CODING stops INTRON Gycbeta100B
3R	27125265	3R_27125265_SNP [dm3] 3R_31299543_SNP [dm6]	C	T	4.390e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	8429721	3R_8429721_SNP [dm3] 3R_12603999_SNP [dm6]	C	T	4.430e^-4	0.974	INTERGENIC
3L	8986246	3L_8986246_SNP [dm3] 3L_8993146_SNP [dm6]	G	A	4.433e^-4	0.974	SYNONYMOUS_CODING smg	TF binding site mE1_TFBS_cad
2R	13696749	2R_13696749_SNP [dm3] 2R_17809244_SNP [dm6]	A	G	4.436e^-4	0.974	SYNONYMOUS_CODING grh	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	8897675	2L_8897675_SNP [dm3] 2L_8897675_SNP [dm6]	T	G	4.443e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10610849	3L_10610849_SNP [dm3] 3L_10617749_SNP [dm6]	T	A	4.462e^-4	0.974	INTERGENIC
2R	5647432	2R_5647432_SNP [dm3] 2R_9759927_SNP [dm6]	A	G	4.462e^-4	0.974	SYNONYMOUS_CODING trpl
3R	9953244	3R_9953244_SNP [dm3] 3R_14127522_SNP [dm6]	G	A	4.465e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
3L	8519966	3L_8519966_DEL [dm3] 3L_8526866_DEL [dm6]	GG	G	4.465e^-4	0.974	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	15086677	3R_15086677_SNP [dm3] 3R_19260955_SNP [dm6]	G	A	4.470e^-4	0.974	DOWNSTREAM CG14280 INTERGENIC
2L	21793522	2L_21793522_SNP [dm3] 2L_21793522_SNP [dm6]	G	A	4.471e^-4	0.974	INTRON CG31612	TF binding site BDTNP1_TFBS_z
3R	22597838	3R_22597838_SNP [dm3] 3R_26772116_SNP [dm6]	G	A	4.501e^-4	0.974	INTERGENIC
3L	19178467	3L_19178467_SNP [dm3] 3L_19185367_SNP [dm6]	A	G	4.510e^-4	0.974	INTRON fz2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
3R	21748019	3R_21748019_SNP [dm3] 3R_25922297_SNP [dm6]	G	A	4.527e^-4	0.974	SYNONYMOUS_CODING CG14546
3L	13914471	3L_13914471_SNP [dm3] 3L_13921371_SNP [dm6]	C	T	4.550e^-4	0.974	INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_kn mE1_TFBS_zfh1
3R	11468079	3R_11468079_SNP [dm3] 3R_15642357_SNP [dm6]	T	C	4.556e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_sens
2L	1963488	2L_1963488_DEL [dm3] 2L_1963488_DEL [dm6]	ATTATCAA	A	4.568e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	9960352	3R_9960352_INS [dm3] 3R_14134630_INS [dm6]	T	TCT	4.569e^-4	0.974	INTERGENIC
2R	6682209	2R_6682209_INS [dm3] 2R_10794704_INS [dm6]	T	TTG	4.585e^-4	0.974	INTRON CG33144
2R	6682226	2R_6682226_SNP [dm3] 2R_10794721_SNP [dm6]	C	T	4.585e^-4	0.974	INTRON CG33144
2R	6734168	2R_6734168_DEL [dm3] 2R_10846663_DEL [dm6]	GGAGTGCAATCAATG...	C	4.587e^-4	0.974	INTRON CG30015
2L	3157959	2L_3157959_SNP [dm3] 2L_3157959_SNP [dm6]	A	T	4.597e^-4	0.974	INTRON Mad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Kr
3L	16081960	3L_16081960_SNP [dm3] 3L_16088860_SNP [dm6]	C	A	4.600e^-4	0.974	SYNONYMOUS_CODING CG5235	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3688625	3L_3688625_SNP [dm3] 3L_3688625_SNP [dm6]	T	G	4.624e^-4	0.974	UPSTREAM CR43484 INTERGENIC
3R	9953478	3R_9953478_SNP [dm3] 3R_14127756_SNP [dm6]	C	A	4.629e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
2L	17333585	2L_17333585_SNP [dm3] 2L_17333585_SNP [dm6]	G	A	4.635e^-4	0.974	INTERGENIC
3L	4631942	3L_4631942_SNP [dm3] 3L_4631942_SNP [dm6]	T	C	4.642e^-4	0.974	INTRON axo
3L	5385422	3L_5385422_SNP [dm3] 3L_5392322_SNP [dm6]	T	A	4.649e^-4	0.974	INTERGENIC
3R	1868972	3R_1868972_SNP [dm3] 3R_6043250_SNP [dm6]	C	T	4.672e^-4	0.974	INTERGENIC
3L	10396634	3L_10396634_SNP [dm3] 3L_10403534_SNP [dm6]	T	C	4.732e^-4	0.974	INTERGENIC
2L	1665208	2L_1665208_SNP [dm3] 2L_1665208_SNP [dm6]	C	G	4.742e^-4	0.974	INTRON chinmo
3R	9953271	3R_9953271_SNP [dm3] 3R_14127549_SNP [dm6]	A	G	4.750e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
3R	13100275	3R_13100275_SNP [dm3] 3R_17274553_SNP [dm6]	T	C	4.782e^-4	0.974	INTERGENIC
3R	23124846	3R_23124846_SNP [dm3] 3R_27299124_SNP [dm6]	G	A	4.790e^-4	0.974	INTRON CG3339
3R	23124989	3R_23124989_SNP [dm3] 3R_27299267_SNP [dm6]	A	C	4.790e^-4	0.974	INTRON CG3339
2R	16527889	2R_16527889_SNP [dm3] 2R_20640384_SNP [dm6]	A	G	4.801e^-4	0.974	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12663079	2R_12663079_SNP [dm3] 2R_16775574_SNP [dm6]	G	A	4.830e^-4	0.974	UTR_3_PRIME Arp53D	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3706104	3L_3706104_SNP [dm3] 3L_3706104_SNP [dm6]	C	G	4.834e^-4	0.974	INTERGENIC
3R	23109657	3R_23109657_SNP [dm3] 3R_27283935_SNP [dm6]	G	C	4.835e^-4	0.974	INTRON CG3368	TF binding site mE1_TFBS_cad
3R	23109671	3R_23109671_SNP [dm3] 3R_27283949_SNP [dm6]	T	A	4.835e^-4	0.974	INTRON CG3368	TF binding site mE1_TFBS_cad
3R	23109676	3R_23109676_SNP [dm3] 3R_27283954_SNP [dm6]	C	T	4.835e^-4	0.974	SPLICE_SITE_REGION CG3368 INTRON CG3368	TF binding site mE1_TFBS_cad
3R	23109697	3R_23109697_SNP [dm3] 3R_27283975_SNP [dm6]	C	A	4.835e^-4	0.974	SYNONYMOUS_CODING CG3368	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23124996	3R_23124996_SNP [dm3] 3R_27299274_SNP [dm6]	T	G	4.835e^-4	0.974	INTRON CG3339
3R	23125006	3R_23125006_INS [dm3] 3R_27299284_INS [dm6]	T	TCTGT	4.835e^-4	0.974	INTRON CG3339
3R	9648680	3R_9648680_DEL [dm3] 3R_13822958_DEL [dm6]	TGATA	T	4.840e^-4	0.974	INTERGENIC
3R	9648686	3R_9648686_DEL [dm3] 3R_13822964_DEL [dm6]	TGC	T	4.840e^-4	0.974	INTERGENIC
2R	19179318	2R_19179318_SNP [dm3] 2R_23291795_SNP [dm6]	T	C	4.865e^-4	0.974	UPSTREAM CR44783 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	15104737	3R_15104737_SNP [dm3] 3R_19279015_SNP [dm6]	G	A	4.877e^-4	0.974	EXON CR44173
2L	8793692	2L_8793692_SNP [dm3] 2L_8793692_SNP [dm6]	G	C	4.886e^-4	0.974	INTERGENIC
2R	4935573	2R_4935573_SNP [dm3] 2R_9048068_SNP [dm6]	C	A	4.887e^-4	0.974	INTRON CG13743
X	4975188	X_4975188_SNP [dm3] X_5081155_SNP [dm6]	G	T	4.896e^-4	0.974	INTRON CG32767	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo
2L	10433797	2L_10433797_SNP [dm3] 2L_10433797_SNP [dm6]	A	T	4.900e^-4	0.974	DOWNSTREAM TfIIB INTRON CG5337	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	24992360	3R_24992360_SNP [dm3] 3R_29166638_SNP [dm6]	T	C	4.903e^-4	0.974	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
3R	24992402	3R_24992402_SNP [dm3] 3R_29166680_SNP [dm6]	A	G	4.903e^-4	0.974	SYNONYMOUS_CODING CG11898	TF binding site mE1_TFBS_chinmo
3L	21999082	3L_21999082_SNP [dm3] 3L_22005982_SNP [dm6]	T	A	4.904e^-4	0.974	INTERGENIC
3L	21999092	3L_21999092_SNP [dm3] 3L_22005992_SNP [dm6]	C	A	4.904e^-4	0.974	INTERGENIC
3R	24820036	3R_24820036_SNP [dm3] 3R_28994314_SNP [dm6]	C	G	4.911e^-4	0.974	INTRON wat	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1963439	2L_1963439_SNP [dm3] 2L_1963439_SNP [dm6]	C	G	4.913e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	1963444	2L_1963444_SNP [dm3] 2L_1963444_SNP [dm6]	G	A	4.913e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	5664053	2R_5664053_INS [dm3] 2R_9776548_INS [dm6]	T	TGTACAT	4.923e^-4	0.974	DOWNSTREAM CR44207 INTRON CG1688
2L	14880811	2L_14880811_SNP [dm3] 2L_14880811_SNP [dm6]	A	C	4.926e^-4	0.974	INTRON Mst35Ba
3L	3637542	3L_3637542_DEL [dm3] 3L_3637542_DEL [dm6]	ATTCTGGTATCCACCA...	T	4.931e^-4	0.974	INTRON dar1
3R	26439001	3R_26439001_DEL [dm3] 3R_30613279_DEL [dm6]	GG	G	4.935e^-4	0.974	EXON CR45571
2R	19166114	2R_19166114_DEL [dm3] 2R_23278591_DEL [dm6]	CAC	C	4.945e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18355279	3L_18355279_SNP [dm3] 3L_18362179_SNP [dm6]	C	A	4.945e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	21060927	3R_21060927_SNP [dm3] 3R_25235205_SNP [dm6]	A	T	4.946e^-4	0.974	INTRON CG10420	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	24816656	3R_24816656_SNP [dm3] 3R_28990934_SNP [dm6]	A	C	4.947e^-4	0.974	INTERGENIC
3R	16985802	3R_16985802_SNP [dm3] 3R_21160080_SNP [dm6]	T	G	4.949e^-4	0.974	SYNONYMOUS_CODING CG10824 INTRON SNF4Agamma
3R	9814568	3R_9814568_DEL [dm3] 3R_13988846_DEL [dm6]	ACA	A	4.958e^-4	0.974	INTRON rdx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
3R	13092286	3R_13092286_SNP [dm3] 3R_17266564_SNP [dm6]	G	A	4.971e^-4	0.974	DOWNSTREAM CG44257 INTERGENIC
3L	10402158	3L_10402158_SNP [dm3] 3L_10409058_SNP [dm6]	C	T	4.971e^-4	0.974	INTERGENIC
3L	10392855	3L_10392855_SNP [dm3] 3L_10399755_SNP [dm6]	A	G	4.971e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	17811640	2R_17811640_SNP [dm3] 2R_21924135_SNP [dm6]	T	C	4.978e^-4	0.974	INTRON Fili
3L	13732474	3L_13732474_SNP [dm3] 3L_13739374_SNP [dm6]	A	C	4.978e^-4	0.974	INTRON bru-3
3R	27067582	3R_27067582_SNP [dm3] 3R_31241860_SNP [dm6]	T	C	4.980e^-4	0.974	INTRON qless
2L	13978947	2L_13978947_SNP [dm3] 2L_13978947_SNP [dm6]	G	A	4.984e^-4	0.974	SYNONYMOUS_CODING Cyp28a5
2L	16714177	2L_16714177_SNP [dm3] 2L_16714177_SNP [dm6]	G	A	4.992e^-4	0.974	INTRON CG31808
3L	13367432	3L_13367432_SNP [dm3] 3L_13374332_SNP [dm6]	C	T	4.998e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	19108613	3L_19108613_SNP [dm3] 3L_19115513_SNP [dm6]	A	G	5.016e^-4	0.974	INTRON CG14082
X	19072605	X_19072605_SNP [dm3] X_19178572_SNP [dm6]	A	G	5.038e^-4	0.974	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19072652	X_19072652_SNP [dm3] X_19178619_SNP [dm6]	A	G	5.038e^-4	0.974	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19072662	X_19072662_SNP [dm3] X_19178629_SNP [dm6]	C	T	5.038e^-4	0.974	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
X	19072676	X_19072676_SNP [dm3] X_19178643_SNP [dm6]	G	T	5.038e^-4	0.974	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	26946521	3R_26946521_SNP [dm3] 3R_31120799_SNP [dm6]	A	G	5.046e^-4	0.974	INTERGENIC
3R	24638172	3R_24638172_SNP [dm3] 3R_28812450_SNP [dm6]	C	G	5.053e^-4	0.974	SYNONYMOUS_CODING CG1646 UTR_5_PRIME CG1646 UPSTREAM snoRNA:291	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	16197159	2L_16197159_SNP [dm3] 2L_16197159_SNP [dm6]	G	A	5.060e^-4	0.974	UPSTREAM CR44735 INTERGENIC
3L	10508549	3L_10508549_SNP [dm3] 3L_10515449_SNP [dm6]	G	T	5.071e^-4	0.974	UPSTREAM A2bp1 INTRON A2bp1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	3951093	X_3951093_SNP [dm3] X_4057060_SNP [dm6]	A	T	5.079e^-4	0.974	INTERGENIC
3R	19946648	3R_19946648_SNP [dm3] 3R_24120926_SNP [dm6]	A	G	5.083e^-4	0.974	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
3R	19946650	3R_19946650_SNP [dm3] 3R_24120928_SNP [dm6]	G	A	5.083e^-4	0.974	INTRON Rootletin	TF binding site mE1_TFBS_chinmo
3R	25850775	3R_25850775_DEL [dm3] 3R_30025053_DEL [dm6]	TTCTT	T	5.100e^-4	0.974	INTRON Axn
3L	18305928	3L_18305928_SNP [dm3] 3L_18312828_SNP [dm6]	A	T	5.119e^-4	0.974	INTERGENIC
3R	14814445	3R_14814445_SNP [dm3] 3R_18988723_SNP [dm6]	A	C	5.144e^-4	0.974	INTRON gukh	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	22056493	3L_22056493_SNP [dm3] 3L_22063393_SNP [dm6]	T	C	5.172e^-4	0.974	INTRON Oct-TyrR	transposable element FlyBase
3R	24452494	3R_24452494_SNP [dm3] 3R_28626772_SNP [dm6]	C	A	5.176e^-4	0.974	INTRON CG10011
2R	15600009	2R_15600009_SNP [dm3] 2R_19712504_SNP [dm6]	T	C	5.179e^-4	0.974	UPSTREAM Obp56f INTRON Obp56e EXON CR44509
2R	15600012	2R_15600012_SNP [dm3] 2R_19712507_SNP [dm6]	C	T	5.179e^-4	0.974	UPSTREAM Obp56f INTRON Obp56e EXON CR44509
2R	15600017	2R_15600017_SNP [dm3] 2R_19712512_SNP [dm6]	G	C	5.179e^-4	0.974	SPLICE_SITE_REGION Obp56e SYNONYMOUS_CODING Obp56e UPSTREAM Obp56f EXON CR44509
2L	7127034	2L_7127034_SNP [dm3] 2L_7127034_SNP [dm6]	C	T	5.187e^-4	0.974	INTRON Pvf3
2R	10018601	2R_10018601_SNP [dm3] 2R_14131096_SNP [dm6]	G	A	5.201e^-4	0.974	INTRON Prosap	TF binding site BDTNP1_TFBS_dl
3R	25426625	3R_25426625_SNP [dm3] 3R_29600903_SNP [dm6]	G	A	5.203e^-4	0.974	UPSTREAM CG7568 INTRON alph
3R	25427062	3R_25427062_SNP [dm3] 3R_29601340_SNP [dm6]	T	G	5.203e^-4	0.974	UPSTREAM CG7568 INTRON alph
2R	19430946	2R_19430946_SNP [dm3] 2R_23543423_SNP [dm6]	C	G	5.206e^-4	0.974	SYNONYMOUS_CODING Gr59f UPSTREAM CG30185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	3721397	3R_3721397_SNP [dm3] 3R_7895675_SNP [dm6]	A	G	5.224e^-4	0.974	UPSTREAM wtrw INTRON mRpS9 & 1 other
3R	1817210	3R_1817210_SNP [dm3] 3R_5991488_SNP [dm6]	T	C	5.245e^-4	0.974	INTERGENIC
2L	9109689	2L_9109689_SNP [dm3] 2L_9109689_SNP [dm6]	T	C	5.249e^-4	0.974	INTERGENIC
3R	13409123	3R_13409123_SNP [dm3] 3R_17583401_SNP [dm6]	A	G	5.257e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	15922227	2R_15922227_SNP [dm3] 2R_20034722_SNP [dm6]	G	T	5.257e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	20666547	3R_20666547_SNP [dm3] 3R_24840825_SNP [dm6]	G	C	5.263e^-4	0.974	NON_SYNONYMOUS_CODING CG33658 DOWNSTREAM sosie
3R	18954658	3R_18954658_SNP [dm3] 3R_23128936_SNP [dm6]	G	A	5.274e^-4	0.974	SYNONYMOUS_CODING hh UPSTREAM CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	5618750	3L_5618750_SNP [dm3] 3L_5625650_SNP [dm6]	T	G	5.278e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5618752	3L_5618752_SNP [dm3] 3L_5625652_SNP [dm6]	A	T	5.278e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5618934	3L_5618934_SNP [dm3] 3L_5625834_SNP [dm6]	T	G	5.278e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	5618946	3L_5618946_DEL [dm3] 3L_5625846_DEL [dm6]	AAAA	A	5.278e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11830794	X_11830794_SNP [dm3] X_11936761_SNP [dm6]	A	G	5.282e^-4	0.974	SYNONYMOUS_CODING cac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	19064137	3R_19064137_SNP [dm3] 3R_23238415_SNP [dm6]	T	C	5.297e^-4	0.974	INTRON CG4467
2R	3561967	2R_3561967_SNP [dm3] 2R_7674462_SNP [dm6]	C	T	5.300e^-4	0.974	UTR_5_PRIME CG12107 UPSTREAM mRpL52 DOWNSTREAM U2A	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18802033	3L_18802033_SNP [dm3] 3L_18808933_SNP [dm6]	G	A	5.307e^-4	0.974	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10458739	2R_10458739_SNP [dm3] 2R_14571234_SNP [dm6]	A	G	5.310e^-4	0.974	NON_SYNONYMOUS_CODING LamC SYNONYMOUS_CODING LamC INTRON ttv	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	17582965	3R_17582965_SNP [dm3] 3R_21757243_SNP [dm6]	C	T	5.359e^-4	0.974	SYNONYMOUS_CODING CG31198	TF binding site mE1_TFBS_cad
3R	18755102	3R_18755102_SNP [dm3] 3R_22929380_SNP [dm6]	A	C	5.365e^-4	0.974	INTRON klg
3R	20300902	3R_20300902_SNP [dm3] 3R_24475180_SNP [dm6]	C	A	5.366e^-4	0.974	INTERGENIC
3R	25859059	3R_25859059_SNP [dm3] 3R_30033337_SNP [dm6]	C	T	5.379e^-4	0.974	SYNONYMOUS_CODING Axn UTR_3_PRIME Axn	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	25139806	3R_25139806_INS [dm3] 3R_29314084_INS [dm6]	T	TT	5.383e^-4	0.974	INTERGENIC
3L	20065681	3L_20065681_SNP [dm3] 3L_20072581_SNP [dm6]	C	A	5.419e^-4	0.974	INTRON sNPF-R
X	4624924	X_4624924_SNP [dm3] X_4730891_SNP [dm6]	C	G	5.420e^-4	0.974	INTERGENIC
3R	23124577	3R_23124577_SNP [dm3] 3R_27298855_SNP [dm6]	A	G	5.443e^-4	0.974	INTRON CG3339	TF binding site mE1_TFBS_chinmo
3R	21993989	3R_21993989_SNP [dm3] 3R_26168267_SNP [dm6]	G	T	5.473e^-4	0.974	INTERGENIC
2L	8833056	2L_8833056_SNP [dm3] 2L_8833056_SNP [dm6]	G	A	5.476e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	1148947	2L_1148947_SNP [dm3] 2L_1148947_SNP [dm6]	C	T	5.482e^-4	0.974	SYNONYMOUS_CODING CG4749 DOWNSTREAM Tfb4	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	16713953	2L_16713953_SNP [dm3] 2L_16713953_SNP [dm6]	C	T	5.518e^-4	0.974	INTRON CG31808
2L	1633547	2L_1633547_SNP [dm3] 2L_1633547_SNP [dm6]	G	T	5.538e^-4	0.974	INTERGENIC
2R	15546756	2R_15546756_SNP [dm3] 2R_19659251_SNP [dm6]	A	G	5.540e^-4	0.974	SYNONYMOUS_CODING CG15125 DOWNSTREAM CR44504	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	18589794	3R_18589794_SNP [dm3] 3R_22764072_SNP [dm6]	T	C	5.541e^-4	0.974	SYNONYMOUS_CODING CG4721 UPSTREAM CG4723 INTRON Usp12-46 & 1 other	TF binding site mE1_TFBS_cad
2L	7957729	2L_7957729_SNP [dm3] 2L_7957729_SNP [dm6]	C	T	5.550e^-4	0.974	INTRON Snoo
3R	25037516	3R_25037516_SNP [dm3] 3R_29211794_SNP [dm6]	G	T	5.561e^-4	0.974	INTERGENIC
3L	6113197	3L_6113197_SNP [dm3] 3L_6120097_SNP [dm6]	T	G	5.562e^-4	0.974	INTRON Ets65A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	9020777	X_9020777_DEL [dm3] X_9126744_DEL [dm6]	TT	T	5.577e^-4	0.974	INTRON fend	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	21254396	3R_21254396_SNP [dm3] 3R_25428674_SNP [dm6]	C	T	5.582e^-4	0.974	INTRON Fur1
3R	21254397	3R_21254397_SNP [dm3] 3R_25428675_SNP [dm6]	A	C	5.582e^-4	0.974	INTRON Fur1
2R	14784104	2R_14784104_SNP [dm3] 2R_18896599_SNP [dm6]	C	A	5.596e^-4	0.974	INTRON sano
3L	10399553	3L_10399553_SNP [dm3] 3L_10406453_SNP [dm6]	T	A	5.596e^-4	0.974	INTERGENIC
3L	6660830	3L_6660830_SNP [dm3] 3L_6667730_SNP [dm6]	G	A	5.596e^-4	0.974	SYNONYMOUS_CODING CG32395
3L	9675812	3L_9675812_SNP [dm3] 3L_9682712_SNP [dm6]	A	G	5.596e^-4	0.974	SYNONYMOUS_CODING alphaTub67C DOWNSTREAM CG6767	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9994138	3L_9994138_SNP [dm3] 3L_10001038_SNP [dm6]	T	C	5.596e^-4	0.974	INTRON dpr6
3L	9994721	3L_9994721_SNP [dm3] 3L_10001621_SNP [dm6]	T	G	5.596e^-4	0.974	INTRON dpr6
3L	9994731	3L_9994731_SNP [dm3] 3L_10001631_SNP [dm6]	A	T	5.596e^-4	0.974	INTRON dpr6
2R	17937393	2R_17937393_SNP [dm3] 2R_22049888_SNP [dm6]	G	C	5.599e^-4	0.974	INTERGENIC
X	20335370	X_20335370_SNP [dm3] X_20464343_SNP [dm6]	A	G	5.634e^-4	0.974	INTRON CG32506
3L	12967359	3L_12967359_SNP [dm3] 3L_12974259_SNP [dm6]	G	A	5.641e^-4	0.974	DOWNSTREAM CG10749 INTERGENIC
2L	16005579	2L_16005579_MNP [dm3] 2L_16005579_MNP [dm6]	TTT	AAA	5.682e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
X	12835494	X_12835494_SNP [dm3] X_12941461_SNP [dm6]	C	A	5.684e^-4	0.974	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
X	7943283	X_7943283_SNP [dm3] X_8049250_SNP [dm6]	T	A	5.706e^-4	0.974	UTR_3_PRIME fs_1_h DOWNSTREAM fs_1_h INTRON fs_1_h	TF binding site BDTNP1_TFBS_dl
3L	13644524	3L_13644524_SNP [dm3] 3L_13651424_SNP [dm6]	T	C	5.735e^-4	0.974	INTRON bru-3
2R	18916579	2R_18916579_SNP [dm3] 2R_23029056_SNP [dm6]	T	C	5.768e^-4	0.974	INTRON twi & 1 other
3L	5322070	3L_5322070_SNP [dm3] 3L_5328970_SNP [dm6]	C	T	5.786e^-4	0.974	INTERGENIC
3L	13546098	3L_13546098_SNP [dm3] 3L_13552998_SNP [dm6]	A	C	5.807e^-4	0.974	INTRON bru-3
3L	13546100	3L_13546100_SNP [dm3] 3L_13553000_SNP [dm6]	T	C	5.807e^-4	0.974	INTRON bru-3
3L	13546126	3L_13546126_SNP [dm3] 3L_13553026_SNP [dm6]	T	C	5.807e^-4	0.974	INTRON bru-3
3L	12886115	3L_12886115_DEL [dm3] 3L_12893015_DEL [dm6]	TATA	T	5.811e^-4	0.974	DOWNSTREAM CG43894 INTRON CG14118	TF binding site mE1_TFBS_Trl
X	4508153	X_4508153_SNP [dm3] X_4614120_SNP [dm6]	G	C	5.837e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18846873	3L_18846873_INS [dm3] 3L_18853773_INS [dm6]	T	TTGCAT	5.837e^-4	0.974	UPSTREAM CR45387 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18124044	3L_18124044_SNP [dm3] 3L_18130944_SNP [dm6]	G	A	5.841e^-4	0.974	SYNONYMOUS_CODING Cyp312a1
2L	17272915	2L_17272915_SNP [dm3] 2L_17272915_SNP [dm6]	G	A	5.852e^-4	0.974	INTERGENIC
2L	9175956	2L_9175956_SNP [dm3] 2L_9175956_SNP [dm6]	G	T	5.852e^-4	0.974	UPSTREAM tai INTRON tai	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	9033070	2L_9033070_SNP [dm3] 2L_9033070_SNP [dm6]	A	T	5.920e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	9033081	2L_9033081_DEL [dm3] 2L_9033081_DEL [dm6]	TC	T	5.920e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	22715255	3R_22715255_SNP [dm3] 3R_26889533_SNP [dm6]	A	T	5.922e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3R	2012314	3R_2012314_SNP [dm3] 3R_6186592_SNP [dm6]	G	A	5.979e^-4	0.974	UPSTREAM NPFR DOWNSTREAM CR31562 INTERGENIC
2R	3910684	2R_3910684_SNP [dm3] 2R_8023179_SNP [dm6]	A	G	5.983e^-4	0.974	EXON CR45267	TF binding site mE1_TFBS_HSA
3R	23405685	3R_23405685_SNP [dm3] 3R_27579963_SNP [dm6]	T	C	5.989e^-4	0.974	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8770837	2L_8770837_SNP [dm3] 2L_8770837_SNP [dm6]	G	T	5.992e^-4	0.974	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_sens
3L	10401150	3L_10401150_SNP [dm3] 3L_10408050_SNP [dm6]	A	C	6.029e^-4	0.974	INTERGENIC
2L	15803290	2L_15803290_SNP [dm3] 2L_15803290_SNP [dm6]	C	T	6.039e^-4	0.974	INTERGENIC
2R	5720417	2R_5720417_SNP [dm3] 2R_9832912_SNP [dm6]	C	T	6.049e^-4	0.974	INTRON hebe
2R	18923040	2R_18923040_SNP [dm3] 2R_23035517_SNP [dm6]	C	T	6.049e^-4	0.974	INTRON twi & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_inv
2L	21893499	2L_21893499_SNP [dm3] 2L_21893499_SNP [dm6]	G	A	6.052e^-4	0.974	UPSTREAM CR43762 INTERGENIC	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
3R	17159111	3R_17159111_SNP [dm3] 3R_21333389_SNP [dm6]	A	C	6.066e^-4	0.974	INTRON CG16791
X	12701856	X_12701856_SNP [dm3] X_12807823_SNP [dm6]	T	G	6.072e^-4	0.974	INTRON Pde9
X	12701878	X_12701878_SNP [dm3] X_12807845_SNP [dm6]	A	G	6.072e^-4	0.974	INTRON Pde9
2L	16005586	2L_16005586_SNP [dm3] 2L_16005586_SNP [dm6]	A	C	6.082e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3R	21254407	3R_21254407_SNP [dm3] 3R_25428685_SNP [dm6]	T	G	6.083e^-4	0.974	INTRON Fur1
3R	18952718	3R_18952718_SNP [dm3] 3R_23126996_SNP [dm6]	A	G	6.083e^-4	0.974	SYNONYMOUS_CODING CG31457 UPSTREAM CG31365	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	9376230	2L_9376230_SNP [dm3] 2L_9376230_SNP [dm6]	A	T	6.090e^-4	0.974	INTRON Shawl
2R	6719775	2R_6719775_SNP [dm3] 2R_10832270_SNP [dm6]	G	A	6.095e^-4	0.974	INTRON CG12344	TF binding site mE1_TFBS_inv
3L	20164674	3L_20164674_SNP [dm3] 3L_20171574_SNP [dm6]	C	T	6.109e^-4	0.974	INTRON CG42674	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	22039639	3R_22039639_INS [dm3] 3R_26213917_INS [dm6]	T	TG	6.122e^-4	0.974	INTERGENIC
3R	22039668	3R_22039668_SNP [dm3] 3R_26213946_SNP [dm6]	A	T	6.122e^-4	0.974	INTERGENIC
3R	22039669	3R_22039669_SNP [dm3] 3R_26213947_SNP [dm6]	G	T	6.122e^-4	0.974	INTERGENIC
3R	21034328	3R_21034328_SNP [dm3] 3R_25208606_SNP [dm6]	C	T	6.125e^-4	0.974	UPSTREAM CG13654 & 1 other INTRON CG13654	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	16927155	3L_16927155_SNP [dm3] 3L_16934055_SNP [dm6]	A	G	6.130e^-4	0.974	INTRON CG11905
3L	6962667	3L_6962667_SNP [dm3] 3L_6969567_SNP [dm6]	A	C	6.154e^-4	0.974	UPSTREAM CG9953 & 1 other INTERGENIC	TF binding site mE1_TFBS_run mE1_TFBS_ttk mE1_TFBS_Ubx
3R	10233138	3R_10233138_SNP [dm3] 3R_14407416_SNP [dm6]	C	G	6.154e^-4	0.974	INTRON cv-c
3L	15477575	3L_15477575_INS [dm3] 3L_15484475_INS [dm6]	T	TAAATATAAAT...	6.176e^-4	0.974	UTR_3_PRIME Ran-like
3R	8121475	3R_8121475_SNP [dm3] 3R_12295753_SNP [dm6]	T	C	6.176e^-4	0.974	UTR_3_PRIME svp INTRON svp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	20066633	3L_20066633_SNP [dm3] 3L_20073533_SNP [dm6]	C	T	6.182e^-4	0.974	INTRON sNPF-R
2R	14792316	2R_14792316_SNP [dm3] 2R_18904811_SNP [dm6]	A	T	6.186e^-4	0.974	INTRON sano	TF binding site BDTNP1_TFBS_dl
3L	20069910	3L_20069910_SNP [dm3] 3L_20076810_SNP [dm6]	T	C	6.186e^-4	0.974	INTRON sNPF-R
3R	27300854	3R_27300854_SNP [dm3] 3R_31475132_SNP [dm6]	T	G	6.187e^-4	0.974	INTERGENIC
3L	11522559	3L_11522559_SNP [dm3] 3L_11529459_SNP [dm6]	T	A	6.188e^-4	0.974	INTRON Mob2
3R	27027965	3R_27027965_SNP [dm3] 3R_31202243_SNP [dm6]	T	G	6.203e^-4	0.974	SYNONYMOUS_CODING CG1544	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14368357	3L_14368357_SNP [dm3] 3L_14375257_SNP [dm6]	G	T	6.210e^-4	0.974	INTERGENIC
2L	9418544	2L_9418544_SNP [dm3] 2L_9418544_SNP [dm6]	A	C	6.211e^-4	0.974	INTRON Mco1
3R	23395582	3R_23395582_SNP [dm3] 3R_27569860_SNP [dm6]	T	G	6.213e^-4	0.974	INTRON wdb	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9962497	3R_9962497_SNP [dm3] 3R_14136775_SNP [dm6]	C	T	6.228e^-4	0.974	INTERGENIC
3R	25222442	3R_25222442_SNP [dm3] 3R_29396720_SNP [dm6]	C	T	6.229e^-4	0.974	INTRON Ptp99A
3L	4794877	3L_4794877_SNP [dm3] 3L_4794877_SNP [dm6]	G	C	6.230e^-4	0.974	INTRON RhoGEF64C
3R	24886672	3R_24886672_SNP [dm3] 3R_29060950_SNP [dm6]	T	C	6.238e^-4	0.974	SYNONYMOUS_CODING Cul5	TF binding site mE1_TFBS_sens
2L	9309008	2L_9309008_SNP [dm3] 2L_9309008_SNP [dm6]	A	C	6.247e^-4	0.974	INTERGENIC
3L	10176564	3L_10176564_SNP [dm3] 3L_10183464_SNP [dm6]	G	A	6.253e^-4	0.974	INTRON dpr10
2L	8808219	2L_8808219_SNP [dm3] 2L_8808219_SNP [dm6]	A	G	6.254e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7203193	2L_7203193_DEL [dm3] 2L_7203193_DEL [dm6]	AA	A	6.271e^-4	0.974	INTRON CG4502	TF binding site BDTNP1_TFBS_dl
2R	17831775	2R_17831775_SNP [dm3] 2R_21944270_SNP [dm6]	C	A	6.280e^-4	0.974	SYNONYMOUS_CODING Fili	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	18753909	3R_18753909_SNP [dm3] 3R_22928187_SNP [dm6]	G	A	6.288e^-4	0.974	INTRON klg	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	23142583	3R_23142583_DEL [dm3] 3R_27316861_DEL [dm6]	AA	A	6.302e^-4	0.974	INTRON CG3339	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	12882959	3L_12882959_SNP [dm3] 3L_12889859_SNP [dm6]	C	T	6.311e^-4	0.974	START_GAINED CG43894 UTR_5_PRIME CG43894 UPSTREAM CG43894 & 1 other DOWNSTREAM CG14120
3R	13535338	3R_13535338_SNP [dm3] 3R_17709616_SNP [dm6]	G	A	6.320e^-4	0.974	INTRON osa	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18174003	3L_18174003_DEL [dm3] 3L_18180903_DEL [dm6]	GA	G	6.325e^-4	0.974	INTRON W
2L	9253309	2L_9253309_SNP [dm3] 2L_9253309_SNP [dm6]	G	A	6.330e^-4	0.974	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	11964542	2L_11964542_SNP [dm3] 2L_11964542_SNP [dm6]	C	A	6.332e^-4	0.974	INTRON CR43314
3L	13086314	3L_13086314_SNP [dm3] 3L_13093214_SNP [dm6]	T	A	6.355e^-4	0.974	INTERGENIC
3R	27066608	3R_27066608_SNP [dm3] 3R_31240886_SNP [dm6]	A	C	6.357e^-4	0.974	INTRON qless
3R	27069016	3R_27069016_SNP [dm3] 3R_31243294_SNP [dm6]	C	T	6.357e^-4	0.974	INTRON qless
3R	27069731	3R_27069731_SNP [dm3] 3R_31244009_SNP [dm6]	A	G	6.357e^-4	0.974	INTRON qless
3L	13560152	3L_13560152_SNP [dm3] 3L_13567052_SNP [dm6]	G	C	6.361e^-4	0.974	INTRON bru-3
3R	24396473	3R_24396473_SNP [dm3] 3R_28570751_SNP [dm6]	G	T	6.361e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24817543	3R_24817543_SNP [dm3] 3R_28991821_SNP [dm6]	T	A	6.362e^-4	0.974	INTERGENIC
3R	9648721	3R_9648721_SNP [dm3] 3R_13822999_SNP [dm6]	A	T	6.366e^-4	0.974	INTERGENIC
3L	5132005	3L_5132005_SNP [dm3] 3L_5138905_SNP [dm6]	A	G	6.374e^-4	0.974	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	20245130	X_20245130_SNP [dm3] X_20374103_SNP [dm6]	G	A	6.384e^-4	0.974	INTERGENIC
X	20245144	X_20245144_SNP [dm3] X_20374117_SNP [dm6]	G	A	6.384e^-4	0.974	INTERGENIC
3L	18178610	3L_18178610_SNP [dm3] 3L_18185510_SNP [dm6]	T	C	6.385e^-4	0.974	UTR_5_PRIME W	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18178905	3L_18178905_SNP [dm3] 3L_18185805_SNP [dm6]	T	A	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18178934	3L_18178934_SNP [dm3] 3L_18185834_SNP [dm6]	G	A	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18179009	3L_18179009_INS [dm3] 3L_18185909_INS [dm6]	A	GG	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18179017	3L_18179017_SNP [dm3] 3L_18185917_SNP [dm6]	G	A	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18179574	3L_18179574_DEL [dm3] 3L_18186474_DEL [dm6]	GG	G	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
3L	18179688	3L_18179688_SNP [dm3] 3L_18186588_SNP [dm6]	G	A	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	18179721	3L_18179721_SNP [dm3] 3L_18186621_SNP [dm6]	G	A	6.385e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl
3L	18180329	3L_18180329_INS [dm3] 3L_18187229_INS [dm6]	T	TATAC	6.385e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_Trl
3L	18180742	3L_18180742_SNP [dm3] 3L_18187642_SNP [dm6]	T	G	6.385e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	18181118	3L_18181118_INS [dm3] 3L_18188018_INS [dm6]	G	GG	6.385e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18181991	3L_18181991_SNP [dm3] 3L_18188891_SNP [dm6]	G	A	6.385e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3L	18187245	3L_18187245_SNP [dm3] 3L_18194145_SNP [dm6]	A	C	6.385e^-4	0.974	INTERGENIC
2R	19432530	2R_19432530_SNP [dm3] 2R_23545007_SNP [dm6]	T	C	6.385e^-4	0.974	UTR_3_PRIME wmd DOWNSTREAM CG30185	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19415278	2R_19415278_SNP [dm3] 2R_23527755_SNP [dm6]	A	C	6.394e^-4	0.974	UTR_3_PRIME mi DOWNSTREAM bw	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	3706249	3L_3706249_SNP [dm3] 3L_3706249_SNP [dm6]	C	A	6.397e^-4	0.974	INTERGENIC
2R	19166108	2R_19166108_SNP [dm3] 2R_23278585_SNP [dm6]	A	T	6.407e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	18282852	3L_18282852_SNP [dm3] 3L_18289752_SNP [dm6]	C	G	6.407e^-4	0.974	INTERGENIC
3L	18355236	3L_18355236_SNP [dm3] 3L_18362136_SNP [dm6]	C	A	6.407e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr
3R	23196805	3R_23196805_SNP [dm3] 3R_27371083_SNP [dm6]	C	T	6.407e^-4	0.974	UTR_3_PRIME CG42534	TF binding site mE1_TFBS_chinmo
3R	25829835	3R_25829835_SNP [dm3] 3R_30004113_SNP [dm6]	C	T	6.407e^-4	0.974	SYNONYMOUS_CODING CG7911 UPSTREAM Nlp DOWNSTREAM Tace	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	26235060	3R_26235060_SNP [dm3] 3R_30409338_SNP [dm6]	T	A	6.407e^-4	0.974	INTERGENIC
X	9919468	X_9919468_SNP [dm3] X_10025435_SNP [dm6]	C	G	6.407e^-4	0.974	INTRON Cht6
2L	8897844	2L_8897844_SNP [dm3] 2L_8897844_SNP [dm6]	C	G	6.408e^-4	0.974	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	13896004	2L_13896004_SNP [dm3] 2L_13896004_SNP [dm6]	C	G	6.409e^-4	0.974	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
2L	13896025	2L_13896025_SNP [dm3] 2L_13896025_SNP [dm6]	T	C	6.409e^-4	0.974	SYNONYMOUS_CODING CenG1A	TF binding site mE1_TFBS_cad
3L	3632980	3L_3632980_INS [dm3] 3L_3632980_INS [dm6]	G	GA	6.413e^-4	0.974	INTRON dar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1826852	3L_1826852_SNP [dm3] 3L_1826852_SNP [dm6]	T	A	6.422e^-4	0.974	INTRON Cpr62Ba	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	4428234	3L_4428234_SNP [dm3] 3L_4428234_SNP [dm6]	C	T	6.422e^-4	0.974	INTERGENIC
3L	18179765	3L_18179765_DEL [dm3] 3L_18186665_DEL [dm6]	ATGTA	A	6.427e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19816328	2L_19816328_SNP [dm3] 2L_19816328_SNP [dm6]	T	C	6.431e^-4	0.974	UPSTREAM snRNA:U5:38ABb & 1 other INTRON sick	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26479623	3R_26479623_SNP [dm3] 3R_30653901_SNP [dm6]	C	T	6.433e^-4	0.974	INTERGENIC
2R	17830726	2R_17830726_SNP [dm3] 2R_21943221_SNP [dm6]	C	A	6.474e^-4	0.974	INTRON Fili	TF binding site mE1_TFBS_chinmo
3L	5799054	3L_5799054_SNP [dm3] 3L_5805954_SNP [dm6]	A	G	6.476e^-4	0.974	DOWNSTREAM CG42272 INTRON S6k	TF binding site BDTNP1_TFBS_dl
3R	19538338	3R_19538338_SNP [dm3] 3R_23712616_SNP [dm6]	T	C	6.476e^-4	0.974	SYNONYMOUS_CODING CG10300 DOWNSTREAM nau
3R	26070924	3R_26070924_SNP [dm3] 3R_30245202_SNP [dm6]	G	A	6.476e^-4	0.974	INTRON CG9733
3R	26070949	3R_26070949_SNP [dm3] 3R_30245227_SNP [dm6]	C	A	6.476e^-4	0.974	INTRON CG9733
3R	26077046	3R_26077046_SNP [dm3] 3R_30251324_SNP [dm6]	T	C	6.476e^-4	0.974	SYNONYMOUS_CODING CG9682 DOWNSTREAM CG34299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna
3R	26079403	3R_26079403_SNP [dm3] 3R_30253681_SNP [dm6]	G	C	6.476e^-4	0.974	NON_SYNONYMOUS_CODING CG18404 DOWNSTREAM CG9682
3R	26079421	3R_26079421_SNP [dm3] 3R_30253699_SNP [dm6]	C	A	6.476e^-4	0.974	NON_SYNONYMOUS_CODING CG18404 DOWNSTREAM CG9682
3R	16703087	3R_16703087_SNP [dm3] 3R_20877365_SNP [dm6]	C	T	6.476e^-4	0.974	UPSTREAM TotZ INTERGENIC
2L	2557788	2L_2557788_SNP [dm3] 2L_2557788_SNP [dm6]	C	A	6.481e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2557798	2L_2557798_DEL [dm3] 2L_2557798_DEL [dm6]	TA	T	6.481e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2557807	2L_2557807_SNP [dm3] 2L_2557807_SNP [dm6]	G	T	6.481e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2557833	2L_2557833_SNP [dm3] 2L_2557833_SNP [dm6]	C	T	6.481e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3L	9484601	3L_9484601_SNP [dm3] 3L_9491501_SNP [dm6]	C	A	6.497e^-4	0.974	SYNONYMOUS_CODING CG32037	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3L	5618952	3L_5618952_INS [dm3] 3L_5625852_INS [dm6]	T	TA	6.506e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12453306	3R_12453306_SNP [dm3] 3R_16627584_SNP [dm6]	G	T	6.509e^-4	0.974	INTRON Fas1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8519873	3L_8519873_SNP [dm3] 3L_8526773_SNP [dm6]	T	A	6.521e^-4	0.974	INTRON foi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16796246	X_16796246_SNP [dm3] X_16902213_SNP [dm6]	A	G	6.530e^-4	0.974	EXON CR44754
3L	8606050	3L_8606050_SNP [dm3] 3L_8612950_SNP [dm6]	T	G	6.532e^-4	0.974	INTRON CG6282
3L	15315074	3L_15315074_SNP [dm3] 3L_15321974_SNP [dm6]	G	T	6.537e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	19156991	2L_19156991_SNP [dm3] 2L_19156991_SNP [dm6]	G	C	6.543e^-4	0.974	DOWNSTREAM CR44977 INTRON brat	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	10401919	3L_10401919_SNP [dm3] 3L_10408819_SNP [dm6]	A	T	6.553e^-4	0.974	INTERGENIC
3R	16873213	3R_16873213_SNP [dm3] 3R_21047491_SNP [dm6]	C	A	6.556e^-4	0.974	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
3L	13560236	3L_13560236_SNP [dm3] 3L_13567136_SNP [dm6]	T	A	6.565e^-4	0.974	INTRON bru-3
3R	11467838	3R_11467838_SNP [dm3] 3R_15642116_SNP [dm6]	A	G	6.567e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	18690872	3R_18690872_SNP [dm3] 3R_22865150_SNP [dm6]	C	T	6.579e^-4	0.974	INTERGENIC
2L	20249634	2L_20249634_SNP [dm3] 2L_20249634_SNP [dm6]	A	T	6.582e^-4	0.974	DOWNSTREAM CR40341 EXON CR40172
3L	4663275	3L_4663275_SNP [dm3] 3L_4663275_SNP [dm6]	G	T	6.592e^-4	0.974	INTRON axo	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	10346865	2L_10346865_SNP [dm3] 2L_10346865_SNP [dm6]	T	A	6.608e^-4	0.974	DOWNSTREAM CG34367 INTRON CG5022
3R	10538101	3R_10538101_SNP [dm3] 3R_14712379_SNP [dm6]	C	A	6.609e^-4	0.974	INTRON kibra	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2R	17811667	2R_17811667_SNP [dm3] 2R_21924162_SNP [dm6]	A	G	6.614e^-4	0.974	INTRON Fili
3L	13112725	3L_13112725_SNP [dm3] 3L_13119625_SNP [dm6]	A	G	6.634e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens
3R	22827814	3R_22827814_SNP [dm3] 3R_27002092_SNP [dm6]	C	T	6.641e^-4	0.974	SYNONYMOUS_CODING CG31077 INTRON RYa-R
2L	10433862	2L_10433862_SNP [dm3] 2L_10433862_SNP [dm6]	G	A	6.643e^-4	0.974	SYNONYMOUS_CODING CG5337 DOWNSTREAM TfIIB	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	23444259	3R_23444259_SNP [dm3] 3R_27618537_SNP [dm6]	C	G	6.646e^-4	0.974	INTRON Tusp
3R	23444277	3R_23444277_INS [dm3] 3R_27618555_INS [dm6]	C	CA	6.646e^-4	0.974	INTRON Tusp
3R	23444361	3R_23444361_SNP [dm3] 3R_27618639_SNP [dm6]	G	T	6.646e^-4	0.974	INTRON Tusp
2L	7105233	2L_7105233_SNP [dm3] 2L_7105233_SNP [dm6]	A	G	6.648e^-4	0.974	INTRON Pvf3
2R	5710266	2R_5710266_SNP [dm3] 2R_9822761_SNP [dm6]	G	A	6.661e^-4	0.974	SPLICE_SITE_REGION CG30001 DOWNSTREAM dila INTRON CG30001	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3R	17715643	3R_17715643_SNP [dm3] 3R_21889921_SNP [dm6]	C	A	6.667e^-4	0.974	INTRON CG6678 EXON CR43844	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
3L	14882295	3L_14882295_SNP [dm3] 3L_14889195_SNP [dm6]	A	G	6.670e^-4	0.974	DOWNSTREAM CR45398 INTERGENIC
X	20246337	X_20246337_DEL [dm3] X_20375310_DEL [dm6]	ATTTGGTATGTGTTTCCCAA...	A	6.693e^-4	0.974	DOWNSTREAM CG12679 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17906815	3R_17906815_SNP [dm3] 3R_22081093_SNP [dm6]	G	C	6.698e^-4	0.974	INTRON CG13408	TF binding site mE1_TFBS_kn
3R	22715161	3R_22715161_SNP [dm3] 3R_26889439_SNP [dm6]	C	G	6.698e^-4	0.974	INTRON T48	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	10346265	X_10346265_SNP [dm3] X_10452232_SNP [dm6]	T	C	6.704e^-4	0.974	NON_SYNONYMOUS_CODING CG32683
2L	8897870	2L_8897870_SNP [dm3] 2L_8897870_SNP [dm6]	G	A	6.740e^-4	0.974	UPSTREAM CG34398 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3R	15086773	3R_15086773_SNP [dm3] 3R_19261051_SNP [dm6]	C	G	6.753e^-4	0.974	DOWNSTREAM CG14280 INTERGENIC
3R	24638823	3R_24638823_SNP [dm3] 3R_28813101_SNP [dm6]	A	G	6.768e^-4	0.974	NON_SYNONYMOUS_CODING CG1646 DOWNSTREAM snoRNA:291	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	16873207	3R_16873207_SNP [dm3] 3R_21047485_SNP [dm6]	T	A	6.773e^-4	0.974	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
2R	7500986	2R_7500986_INS [dm3] 2R_11613481_INS [dm6]	T	TT	6.816e^-4	0.974	INTRON tou	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18066807	2R_18066807_SNP [dm3] 2R_22179302_SNP [dm6]	T	C	6.826e^-4	0.974	UPSTREAM CG11170 & 1 other INTRON CG11170	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	12978969	3L_12978969_SNP [dm3] 3L_12985869_SNP [dm6]	C	T	6.830e^-4	0.974	INTERGENIC
3R	25952960	3R_25952960_SNP [dm3] 3R_30127238_SNP [dm6]	C	T	6.834e^-4	0.974	SYNONYMOUS_CODING Ppi1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	10397329	X_10397329_SNP [dm3] X_10503296_SNP [dm6]	T	A	6.843e^-4	0.974	INTRON spri
2R	5668507	2R_5668507_SNP [dm3] 2R_9781002_SNP [dm6]	G	C	6.850e^-4	0.974	INTRON CG1688	TF binding site mE1_TFBS_inv
3R	9648550	3R_9648550_SNP [dm3] 3R_13822828_SNP [dm6]	T	A	6.859e^-4	0.974	INTERGENIC
3R	9648607	3R_9648607_DEL [dm3] 3R_13822885_DEL [dm6]	AG	A	6.859e^-4	0.974	INTERGENIC
3R	9648612	3R_9648612_SNP [dm3] 3R_13822890_SNP [dm6]	A	T	6.859e^-4	0.974	INTERGENIC
3R	9648615	3R_9648615_SNP [dm3] 3R_13822893_SNP [dm6]	T	A	6.859e^-4	0.974	INTERGENIC
3R	9648616	3R_9648616_SNP [dm3] 3R_13822894_SNP [dm6]	C	A	6.859e^-4	0.974	INTERGENIC
3R	9648622	3R_9648622_DEL [dm3] 3R_13822900_DEL [dm6]	TTT	A	6.859e^-4	0.974	INTERGENIC
3R	9648626	3R_9648626_SNP [dm3] 3R_13822904_SNP [dm6]	A	C	6.859e^-4	0.974	INTERGENIC
3R	9648629	3R_9648629_MNP [dm3] 3R_13822907_MNP [dm6]	AATG	TGAT	6.859e^-4	0.974	INTERGENIC
2R	13704241	2R_13704241_SNP [dm3] 2R_17816736_SNP [dm6]	A	C	6.865e^-4	0.974	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	7228338	X_7228338_SNP [dm3] X_7334305_SNP [dm6]	T	G	6.873e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	8306375	2R_8306375_SNP [dm3] 2R_12418870_SNP [dm6]	C	A	6.881e^-4	0.974	DOWNSTREAM CG42782 & 2 others INTERGENIC
3R	3132702	3R_3132702_SNP [dm3] 3R_7306980_SNP [dm6]	T	G	6.887e^-4	0.974	INTRON rn	TF binding site mE1_TFBS_Trl
2R	6719985	2R_6719985_SNP [dm3] 2R_10832480_SNP [dm6]	C	A	6.896e^-4	0.974	INTRON CG12344
2R	5712148	2R_5712148_SNP [dm3] 2R_9824643_SNP [dm6]	G	A	6.907e^-4	0.974	SYNONYMOUS_CODING dila	TF binding site mE1_TFBS_chinmo
3L	7827948	3L_7827948_SNP [dm3] 3L_7834848_SNP [dm6]	G	A	6.908e^-4	0.974	INTRON Pdp1
3R	9953364	3R_9953364_SNP [dm3] 3R_14127642_SNP [dm6]	G	A	6.909e^-4	0.974	SYNONYMOUS_CODING RpII140	TF binding site mE1_TFBS_sens
X	4624912	X_4624912_SNP [dm3] X_4730879_SNP [dm6]	T	C	6.920e^-4	0.974	INTERGENIC
2L	17871672	2L_17871672_SNP [dm3] 2L_17871672_SNP [dm6]	T	C	6.921e^-4	0.974	INTRON CadN2
3R	25240559	3R_25240559_INS [dm3] 3R_29414837_INS [dm6]	C	CT	6.923e^-4	0.974	INTRON Ptp99A
3R	19064178	3R_19064178_SNP [dm3] 3R_23238456_SNP [dm6]	A	C	6.924e^-4	0.974	INTRON CG4467
2L	7106108	2L_7106108_SNP [dm3] 2L_7106108_SNP [dm6]	A	T	6.928e^-4	0.974	INTRON Pvf3	TF binding site mE1_TFBS_sbb
2L	4850957	2L_4850957_SNP [dm3] 2L_4850957_SNP [dm6]	G	A	6.930e^-4	0.974	SYNONYMOUS_CODING Mon1 UPSTREAM mRpS2	TF binding site mE1_TFBS_sens
3R	17213008	3R_17213008_SNP [dm3] 3R_21387286_SNP [dm6]	T	C	6.937e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14666328	2R_14666328_SNP [dm3] 2R_18778823_SNP [dm6]	C	A	6.948e^-4	0.974	INTERGENIC
2L	5383206	2L_5383206_SNP [dm3] 2L_5383206_SNP [dm6]	T	C	6.952e^-4	0.974	INTERGENIC
3R	11424757	3R_11424757_SNP [dm3] 3R_15599035_SNP [dm6]	C	T	6.955e^-4	0.974	INTERGENIC
3R	15961555	3R_15961555_SNP [dm3] 3R_20135833_SNP [dm6]	T	C	6.959e^-4	0.974	INTERGENIC
2L	14452582	2L_14452582_SNP [dm3] 2L_14452582_SNP [dm6]	G	A	6.960e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	10118429	2L_10118429_SNP [dm3] 2L_10118429_SNP [dm6]	G	A	6.966e^-4	0.974	INTRON CG44153 & 1 other
3R	4068788	3R_4068788_SNP [dm3] 3R_8243066_SNP [dm6]	C	A	6.970e^-4	0.974	NON_SYNONYMOUS_CODING CG9636 UPSTREAM CG33722 & 1 other
2R	16527751	2R_16527751_SNP [dm3] 2R_20640246_SNP [dm6]	C	T	6.992e^-4	0.974	SYNONYMOUS_CODING rig UPSTREAM maf-S	TF binding site BDTNP1_TFBS_Med mE1_TFBS_chinmo mE1_TFBS_HSA
3R	17906318	3R_17906318_SNP [dm3] 3R_22080596_SNP [dm6]	C	T	7.010e^-4	0.974	SYNONYMOUS_CODING CG13408
2L	2557921	2L_2557921_SNP [dm3] 2L_2557921_SNP [dm6]	C	T	7.013e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_inv
3L	7834182	3L_7834182_SNP [dm3] 3L_7841082_SNP [dm6]	G	A	7.023e^-4	0.974	INTRON Pdp1	regulatory region REDfly_CRMs
3L	7834278	3L_7834278_SNP [dm3] 3L_7841178_SNP [dm6]	C	T	7.023e^-4	0.974	INTRON Pdp1	regulatory region REDfly_CRMs
3R	21028610	3R_21028610_DEL [dm3] 3R_25202888_DEL [dm6]	AT	A	7.023e^-4	0.974	INTRON CG13654 & 1 other
3R	21028616	3R_21028616_SNP [dm3] 3R_25202894_SNP [dm6]	T	A	7.023e^-4	0.974	INTRON CG13654 & 1 other
X	20245250	X_20245250_SNP [dm3] X_20374223_SNP [dm6]	C	G	7.024e^-4	0.974	INTERGENIC
X	20245270	X_20245270_SNP [dm3] X_20374243_SNP [dm6]	C	A	7.024e^-4	0.974	INTERGENIC
2L	9423847	2L_9423847_SNP [dm3] 2L_9423847_SNP [dm6]	G	A	7.071e^-4	0.974	SYNONYMOUS_CODING Mco1	TF binding site mE1_TFBS_sens
2R	17465988	2R_17465988_SNP [dm3] 2R_21578483_SNP [dm6]	G	A	7.073e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17586859	X_17586859_SNP [dm3] X_17692826_SNP [dm6]	G	T	7.088e^-4	0.974	INTRON chas
X	17586863	X_17586863_SNP [dm3] X_17692830_SNP [dm6]	A	G	7.088e^-4	0.974	INTRON chas
X	17586872	X_17586872_SNP [dm3] X_17692839_SNP [dm6]	G	C	7.088e^-4	0.974	INTRON chas
X	17586882	X_17586882_SNP [dm3] X_17692849_SNP [dm6]	T	C	7.088e^-4	0.974	INTRON chas
X	17586886	X_17586886_SNP [dm3] X_17692853_SNP [dm6]	T	A	7.088e^-4	0.974	INTRON chas
X	17586890	X_17586890_SNP [dm3] X_17692857_SNP [dm6]	A	G	7.088e^-4	0.974	INTRON chas
X	17586893	X_17586893_INS [dm3] X_17692860_INS [dm6]	T	TACTGATAGAAAACTAAT...	7.088e^-4	0.974	INTRON chas
X	17586901	X_17586901_SNP [dm3] X_17692868_SNP [dm6]	G	A	7.088e^-4	0.974	INTRON chas
X	17586907	X_17586907_SNP [dm3] X_17692874_SNP [dm6]	G	A	7.088e^-4	0.974	INTRON chas
X	17586908	X_17586908_INS [dm3] X_17692875_INS [dm6]	A	ATTTAT	7.088e^-4	0.974	INTRON chas
X	17586913	X_17586913_SNP [dm3] X_17692880_SNP [dm6]	C	G	7.088e^-4	0.974	INTRON chas
X	17586914	X_17586914_INS [dm3] X_17692881_INS [dm6]	T	TAAAGGAAATT...	7.088e^-4	0.974	INTRON chas
X	17586918	X_17586918_SNP [dm3] X_17692885_SNP [dm6]	A	T	7.088e^-4	0.974	INTRON chas
X	17586921	X_17586921_INS [dm3] X_17692888_INS [dm6]	A	AG	7.088e^-4	0.974	INTRON chas
X	17586930	X_17586930_SNP [dm3] X_17692897_SNP [dm6]	G	C	7.088e^-4	0.974	INTRON chas
X	17586935	X_17586935_INS [dm3] X_17692902_INS [dm6]	A	TT	7.088e^-4	0.974	INTRON chas
X	17586984	X_17586984_INS [dm3] X_17692951_INS [dm6]	C	TTT	7.088e^-4	0.974	INTRON chas
3R	14106694	3R_14106694_SNP [dm3] 3R_18280972_SNP [dm6]	T	C	7.093e^-4	0.974	INTRON eIF-1A	TF binding site mE1_TFBS_sens
3L	12004310	3L_12004310_SNP [dm3] 3L_12011210_SNP [dm6]	C	G	7.141e^-4	0.974	SYNONYMOUS_CODING rols	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	19184495	2R_19184495_SNP [dm3] 2R_23296972_SNP [dm6]	A	G	7.149e^-4	0.974	INTERGENIC
2L	1963450	2L_1963450_SNP [dm3] 2L_1963450_SNP [dm6]	G	A	7.154e^-4	0.974	INTRON erm	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
3R	25139808	3R_25139808_SNP [dm3] 3R_29314086_SNP [dm6]	C	T	7.161e^-4	0.974	INTERGENIC
3L	13916209	3L_13916209_SNP [dm3] 3L_13923109_SNP [dm6]	A	T	7.164e^-4	0.974	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2L	11964544	2L_11964544_DEL [dm3] 2L_11964544_DEL [dm6]	CGATTGT	A	7.169e^-4	0.974	INTRON CR43314
2L	20248573	2L_20248573_SNP [dm3] 2L_20248573_SNP [dm6]	C	T	7.172e^-4	0.974	DOWNSTREAM CR40172 EXON CR40341
3R	26300537	3R_26300537_SNP [dm3] 3R_30474815_SNP [dm6]	C	T	7.181e^-4	0.974	INTRON PH4alphaEFB	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26045726	3R_26045726_SNP [dm3] 3R_30220004_SNP [dm6]	C	T	7.183e^-4	0.974	INTERGENIC
2L	13588834	2L_13588834_SNP [dm3] 2L_13588834_SNP [dm6]	G	A	7.184e^-4	0.974	INTRON kuz
2R	15536513	2R_15536513_SNP [dm3] 2R_19649008_SNP [dm6]	T	C	7.190e^-4	0.974	INTERGENIC
3R	22752976	3R_22752976_SNP [dm3] 3R_26927254_SNP [dm6]	C	T	7.204e^-4	0.974	INTRON sda
2R	14320414	2R_14320414_SNP [dm3] 2R_18432909_SNP [dm6]	A	C	7.221e^-4	0.974	INTRON CG30118
2R	5660755	2R_5660755_SNP [dm3] 2R_9773250_SNP [dm6]	T	C	7.228e^-4	0.974	INTRON CG1688
2L	10520955	2L_10520955_SNP [dm3] 2L_10520955_SNP [dm6]	G	A	7.233e^-4	0.974	INTERGENIC
2R	14149372	2R_14149372_SNP [dm3] 2R_18261867_SNP [dm6]	A	G	7.243e^-4	0.974	INTERGENIC
3R	25854162	3R_25854162_SNP [dm3] 3R_30028440_SNP [dm6]	T	C	7.252e^-4	0.974	INTRON Axn
2L	19225489	2L_19225489_SNP [dm3] 2L_19225489_SNP [dm6]	A	C	7.254e^-4	0.974	INTERGENIC
3R	17211313	3R_17211313_SNP [dm3] 3R_21385591_SNP [dm6]	T	C	7.271e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	12521145	2R_12521145_SNP [dm3] 2R_16633640_SNP [dm6]	T	G	7.274e^-4	0.974	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	15539073	2R_15539073_SNP [dm3] 2R_19651568_SNP [dm6]	T	G	7.277e^-4	0.974	UPSTREAM Ir56e DOWNSTREAM CR44212 INTERGENIC
2R	18037292	2R_18037292_SNP [dm3] 2R_22149787_SNP [dm6]	C	T	7.277e^-4	0.974	INTRON a
2R	18037293	2R_18037293_SNP [dm3] 2R_22149788_SNP [dm6]	G	C	7.277e^-4	0.974	INTRON a
3R	2549529	3R_2549529_SNP [dm3] 3R_6723807_SNP [dm6]	C	G	7.290e^-4	0.974	INTRON pb	enhancer mE1_CBP_Enhancers regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA
3R	9648605	3R_9648605_SNP [dm3] 3R_13822883_SNP [dm6]	T	G	7.295e^-4	0.974	INTERGENIC
3L	10394246	3L_10394246_SNP [dm3] 3L_10401146_SNP [dm6]	G	A	7.314e^-4	0.974	INTERGENIC
2R	11475900	2R_11475900_SNP [dm3] 2R_15588395_SNP [dm6]	G	A	7.316e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2831657	2L_2831657_SNP [dm3] 2L_2831657_SNP [dm6]	T	G	7.322e^-4	0.974	INTERGENIC
2R	19143054	2R_19143054_SNP [dm3] 2R_23255531_SNP [dm6]	A	T	7.322e^-4	0.974	INTERGENIC
2L	10118436	2L_10118436_SNP [dm3] 2L_10118436_SNP [dm6]	A	T	7.329e^-4	0.974	INTRON CG44153 & 1 other
3R	14545508	3R_14545508_SNP [dm3] 3R_18719786_SNP [dm6]	T	C	7.336e^-4	0.974	DOWNSTREAM VAChT INTRON Cha
2R	14616438	2R_14616438_SNP [dm3] 2R_18728933_SNP [dm6]	G	A	7.342e^-4	0.974	SYNONYMOUS_CODING List INTRON Hs3st-A
2R	18425759	2R_18425759_SNP [dm3] 2R_22538254_SNP [dm6]	C	T	7.353e^-4	0.974	INTRON px
3R	11903603	3R_11903603_DEL [dm3] 3R_16077881_DEL [dm6]	CTTTAACCCGAAATGGAGCA...	C	7.366e^-4	0.974	INTRON Mhcl
3L	16023033	3L_16023033_SNP [dm3] 3L_16029933_SNP [dm6]	C	T	7.371e^-4	0.974	SYNONYMOUS_CODING Notum	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	19832954	2L_19832954_SNP [dm3] 2L_19832954_SNP [dm6]	G	A	7.377e^-4	0.974	INTRON sick
2L	9033109	2L_9033109_SNP [dm3] 2L_9033109_SNP [dm6]	G	T	7.384e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18186822	3L_18186822_SNP [dm3] 3L_18193722_SNP [dm6]	T	C	7.442e^-4	0.974	INTERGENIC
3R	9945461	3R_9945461_SNP [dm3] 3R_14119739_SNP [dm6]	G	A	7.442e^-4	0.974	UTR_3_PRIME Abi	TF binding site mE1_TFBS_cad
3R	26043774	3R_26043774_SNP [dm3] 3R_30218052_SNP [dm6]	G	T	7.471e^-4	0.974	INTERGENIC
3R	22572818	3R_22572818_SNP [dm3] 3R_26747096_SNP [dm6]	T	A	7.486e^-4	0.974	INTERGENIC
2R	13864476	2R_13864476_SNP [dm3] 2R_17976971_SNP [dm6]	G	T	7.493e^-4	0.974	INTRON dpr13
2L	3153238	2L_3153238_SNP [dm3] 2L_3153238_SNP [dm6]	C	T	7.501e^-4	0.974	UPSTREAM Mad INTRON Mad
3R	19766820	3R_19766820_SNP [dm3] 3R_23941098_SNP [dm6]	T	C	7.501e^-4	0.974	INTRON Gdh
3R	21131296	3R_21131296_SNP [dm3] 3R_25305574_SNP [dm6]	A	C	7.508e^-4	0.974	SYNONYMOUS_CODING CG31436 DOWNSTREAM CG10550
X	20567376	X_20567376_SNP [dm3] X_20696349_SNP [dm6]	A	G	7.535e^-4	0.974	SYNONYMOUS_CODING run	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25271446	3R_25271446_SNP [dm3] 3R_29445724_SNP [dm6]	G	C	7.560e^-4	0.974	INTRON Ptp99A
3R	27079264	3R_27079264_SNP [dm3] 3R_31253542_SNP [dm6]	C	T	7.561e^-4	0.974	SYNONYMOUS_CODING mRpL32 UPSTREAM qless DOWNSTREAM CG1750	TF binding site mE1_TFBS_sens
3R	9621629	3R_9621629_SNP [dm3] 3R_13795907_SNP [dm6]	G	T	7.565e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	14813544	3L_14813544_SNP [dm3] 3L_14820444_SNP [dm6]	C	A	7.578e^-4	0.974	INTRON CG17839
3L	13915659	3L_13915659_SNP [dm3] 3L_13922559_SNP [dm6]	T	A	7.578e^-4	0.974	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10653539	3L_10653539_SNP [dm3] 3L_10660439_SNP [dm6]	A	G	7.580e^-4	0.974	UPSTREAM CG32066 INTRON CG32066	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	16856310	2L_16856310_SNP [dm3] 2L_16856310_SNP [dm6]	C	T	7.589e^-4	0.974	INTRON CG31809	transposable element FlyBase
3L	14618657	3L_14618657_SNP [dm3] 3L_14625557_SNP [dm6]	T	C	7.599e^-4	0.974	INTRON CG9628	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	25598019	3R_25598019_SNP [dm3] 3R_29772297_SNP [dm6]	G	A	7.608e^-4	0.974	UPSTREAM kay INTRON kay	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
3L	4891954	3L_4891954_SNP [dm3] 3L_4891954_SNP [dm6]	A	T	7.612e^-4	0.974	INTRON CG17150	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18936666	2R_18936666_SNP [dm3] 2R_23049143_SNP [dm6]	A	G	7.613e^-4	0.974	DOWNSTREAM twi INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	14549276	2R_14549276_SNP [dm3] 2R_18661771_SNP [dm6]	A	G	7.633e^-4	0.974	UPSTREAM Gint3 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	14508467	3L_14508467_SNP [dm3] 3L_14515367_SNP [dm6]	A	G	7.640e^-4	0.974	INTRON bbg
3R	9648676	3R_9648676_SNP [dm3] 3R_13822954_SNP [dm6]	G	T	7.647e^-4	0.974	INTERGENIC
3R	16553635	3R_16553635_SNP [dm3] 3R_20727913_SNP [dm6]	G	A	7.652e^-4	0.974	INTERGENIC
3R	9561855	3R_9561855_SNP [dm3] 3R_13736133_SNP [dm6]	T	C	7.655e^-4	0.974	INTRON CG34383
X	3425959	X_3425959_SNP [dm3] X_3531926_SNP [dm6]	A	G	7.661e^-4	0.974	INTRON CG32791
X	10781236	X_10781236_SNP [dm3] X_10887203_SNP [dm6]	C	A	7.664e^-4	0.974	INTRON Ork1	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	7705928	3L_7705928_SNP [dm3] 3L_7712828_SNP [dm6]	C	T	7.664e^-4	0.974	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_sens
3R	18694184	3R_18694184_SNP [dm3] 3R_22868462_SNP [dm6]	T	C	7.665e^-4	0.974	INTERGENIC
3R	9648484	3R_9648484_SNP [dm3] 3R_13822762_SNP [dm6]	G	T	7.685e^-4	0.974	INTERGENIC
2R	7823478	2R_7823478_SNP [dm3] 2R_11935973_SNP [dm6]	T	C	7.686e^-4	0.974	INTERGENIC
3R	26220593	3R_26220593_SNP [dm3] 3R_30394871_SNP [dm6]	T	G	7.703e^-4	0.974	INTERGENIC	TF binding site mE1_TFBS_Trl
3R	25815357	3R_25815357_SNP [dm3] 3R_29989635_SNP [dm6]	A	T	7.708e^-4	0.974	SYNONYMOUS_CODING CG7896	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	26018339	3R_26018339_DEL [dm3] 3R_30192617_DEL [dm6]	GG	G	7.709e^-4	0.974	INTERGENIC
3R	13078051	3R_13078051_DEL [dm3] 3R_17252329_DEL [dm6]	CAG	C	7.710e^-4	0.974	INTRON beat-IIb
3L	14553230	3L_14553230_SNP [dm3] 3L_14560130_SNP [dm6]	G	A	7.722e^-4	0.974	DOWNSTREAM Lk INTRON CR44843 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	8896855	2L_8896855_SNP [dm3] 2L_8896855_SNP [dm6]	C	T	7.743e^-4	0.974	INTERGENIC
2R	9509425	2R_9509425_DEL [dm3] 2R_13621920_DEL [dm6]	ATATG	A	7.762e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	13916324	3L_13916324_SNP [dm3] 3L_13923224_SNP [dm6]	T	A	7.767e^-4	0.974	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_Trl
2R	5723279	2R_5723279_DEL [dm3] 2R_9835774_DEL [dm6]	GAGCTGCAG	G	7.772e^-4	0.974	INTRON hebe	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	1635835	2L_1635835_DEL [dm3] 2L_1635835_DEL [dm6]	TC	T	7.809e^-4	0.974	INTERGENIC
3L	4428162	3L_4428162_SNP [dm3] 3L_4428162_SNP [dm6]	A	G	7.816e^-4	0.974	INTERGENIC
3L	9302629	3L_9302629_SNP [dm3] 3L_9309529_SNP [dm6]	C	G	7.822e^-4	0.974	INTERGENIC
3R	25850771	3R_25850771_SNP [dm3] 3R_30025049_SNP [dm6]	T	G	7.830e^-4	0.974	INTRON Axn
3L	19093621	3L_19093621_SNP [dm3] 3L_19100521_SNP [dm6]	T	C	7.841e^-4	0.974	UPSTREAM Gem2 INTERGENIC
3R	13159462	3R_13159462_SNP [dm3] 3R_17333740_SNP [dm6]	C	T	7.844e^-4	0.974	INTRON beat-IIa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18179227	3L_18179227_SNP [dm3] 3L_18186127_SNP [dm6]	G	T	7.845e^-4	0.974	UPSTREAM W INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2L	4850259	2L_4850259_SNP [dm3] 2L_4850259_SNP [dm6]	G	C	7.853e^-4	0.974	NON_SYNONYMOUS_CODING mRpS2 UPSTREAM Mon1 DOWNSTREAM CG11927	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	4850369	2L_4850369_SNP [dm3] 2L_4850369_SNP [dm6]	A	G	7.853e^-4	0.974	UTR_5_PRIME mRpS2 UPSTREAM Mon1 DOWNSTREAM CG11927	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20188034	3R_20188034_SNP [dm3] 3R_24362312_SNP [dm6]	T	A	7.865e^-4	0.974	NON_SYNONYMOUS_CODING CG33339 UPSTREAM CG5762 & 1 other
2L	9193224	2L_9193224_SNP [dm3] 2L_9193224_SNP [dm6]	C	T	7.868e^-4	0.974	INTRON tai
3L	8871259	3L_8871259_SNP [dm3] 3L_8878159_SNP [dm6]	T	C	7.870e^-4	0.974	INTRON dally
2L	9557585	2L_9557585_SNP [dm3] 2L_9557585_SNP [dm6]	G	T	7.872e^-4	0.974	INTRON jp
3L	14848015	3L_14848015_SNP [dm3] 3L_14854915_SNP [dm6]	T	G	7.872e^-4	0.974	INTRON CG17839
2R	8173240	2R_8173240_SNP [dm3] 2R_12285735_SNP [dm6]	T	A	7.883e^-4	0.974	UPSTREAM CG42700 INTRON CG42700
3L	15847827	3L_15847827_SNP [dm3] 3L_15854727_SNP [dm6]	C	A	7.890e^-4	0.974	INTRON pHCl
2R	16043183	2R_16043183_SNP [dm3] 2R_20155678_SNP [dm6]	G	A	7.891e^-4	0.974	INTERGENIC
2R	3865050	2R_3865050_SNP [dm3] 2R_7977545_SNP [dm6]	A	C	7.905e^-4	0.974	SYNONYMOUS_CODING ACC	TF binding site mE1_TFBS_cad
3R	13152472	3R_13152472_SNP [dm3] 3R_17326750_SNP [dm6]	G	T	7.909e^-4	0.974	INTRON beat-IIa
3R	13258422	3R_13258422_SNP [dm3] 3R_17432700_SNP [dm6]	C	A	7.916e^-4	0.974	INTRON CG5873
3R	23798517	3R_23798517_SNP [dm3] 3R_27972795_SNP [dm6]	A	G	7.917e^-4	0.974	INTRON betaTub97EF
3L	6659194	3L_6659194_SNP [dm3] 3L_6666094_SNP [dm6]	G	A	7.920e^-4	0.974	UPSTREAM eIF4E-4 DOWNSTREAM CG32395 EXON CR45173
2R	18453123	2R_18453123_SNP [dm3] 2R_22565618_SNP [dm6]	G	A	7.926e^-4	0.974	INTRON dnr1	TF binding site mE1_TFBS_cad
2R	18453154	2R_18453154_SNP [dm3] 2R_22565649_SNP [dm6]	C	T	7.926e^-4	0.974	INTRON dnr1	TF binding site mE1_TFBS_cad
3R	9553766	3R_9553766_SNP [dm3] 3R_13728044_SNP [dm6]	C	A	7.929e^-4	0.974	INTRON CG34383
3L	17176448	3L_17176448_SNP [dm3] 3L_17183348_SNP [dm6]	G	C	7.939e^-4	0.974	INTRON Rbp6
3L	20067053	3L_20067053_SNP [dm3] 3L_20073953_SNP [dm6]	C	A	7.940e^-4	0.974	INTRON sNPF-R	TF binding site mE1_TFBS_cad
3R	13076029	3R_13076029_SNP [dm3] 3R_17250307_SNP [dm6]	G	A	7.953e^-4	0.974	INTRON beat-IIb
3L	4633993	3L_4633993_SNP [dm3] 3L_4633993_SNP [dm6]	C	G	7.959e^-4	0.974	DOWNSTREAM CG13716 INTRON axo
X	19359635	X_19359635_SNP [dm3] X_19465602_SNP [dm6]	C	A	7.964e^-4	0.974	SYNONYMOUS_CODING kek5	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	18728538	3R_18728538_SNP [dm3] 3R_22902816_SNP [dm6]	T	A	7.966e^-4	0.974	INTRON klg
2L	1142964	2L_1142964_SNP [dm3] 2L_1142964_SNP [dm6]	G	A	7.974e^-4	0.974	UPSTREAM MFS3 EXON CR45717	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	4972876	2L_4972876_SNP [dm3] 2L_4972876_SNP [dm6]	T	C	7.980e^-4	0.974	SYNONYMOUS_CODING CG14043 INTRON l_2_05714	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3R	2581761	3R_2581761_SNP [dm3] 3R_6756039_SNP [dm6]	C	A	7.994e^-4	0.974	UTR_3_PRIME bcd	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	19840166	2R_19840166_SNP [dm3] 2R_23952643_SNP [dm6]	C	A	8.002e^-4	0.974	SYNONYMOUS_CODING CG3803 DOWNSTREAM fzr2 & 1 other
X	1467945	X_1467945_SNP [dm3] X_1573912_SNP [dm6]	C	G	8.005e^-4	0.974	INTRON Mur2B
2L	8770452	2L_8770452_SNP [dm3] 2L_8770452_SNP [dm6]	C	T	8.017e^-4	0.974	NON_SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	8770474	2L_8770474_SNP [dm3] 2L_8770474_SNP [dm6]	C	T	8.017e^-4	0.974	SYNONYMOUS_CODING CG9465	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	9131884	3L_9131884_SNP [dm3] 3L_9138784_SNP [dm6]	G	A	8.020e^-4	0.974	SYNONYMOUS_CODING nwk
2R	8195011	2R_8195011_SNP [dm3] 2R_12307506_SNP [dm6]	C	A	8.028e^-4	0.974	INTRON CG17739
3L	7895579	3L_7895579_SNP [dm3] 3L_7902479_SNP [dm6]	T	C	8.029e^-4	0.974	INTRON pbl	TF binding site BDTNP1_TFBS_twi
3R	518879	3R_518879_SNP [dm3] 3R_4693157_SNP [dm6]	A	G	8.033e^-4	0.974	INTRON CG43427
3R	518892	3R_518892_SNP [dm3] 3R_4693170_SNP [dm6]	C	T	8.033e^-4	0.974	INTRON CG43427
2R	19158347	2R_19158347_SNP [dm3] 2R_23270824_SNP [dm6]	G	A	8.040e^-4	0.974	NON_SYNONYMOUS_CODING CG13540 DOWNSTREAM ord	TF binding site BDTNP1_TFBS_twi
2L	19221033	2L_19221033_SNP [dm3] 2L_19221033_SNP [dm6]	A	T	8.046e^-4	0.974	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2L	16005727	2L_16005727_SNP [dm3] 2L_16005727_SNP [dm6]	A	T	8.049e^-4	0.974	UPSTREAM CR44844 DOWNSTREAM CG31820 & 2 others INTRON beat-Ic
3L	21797696	3L_21797696_SNP [dm3] 3L_21804596_SNP [dm6]	A	G	8.049e^-4	0.974	INTERGENIC
3L	1705402	3L_1705402_SNP [dm3] 3L_1705402_SNP [dm6]	G	C	8.068e^-4	0.974	INTRON CG7991
3L	13176627	3L_13176627_SNP [dm3] 3L_13183527_SNP [dm6]	C	G	8.072e^-4	0.974	INTERGENIC
3L	13176634	3L_13176634_SNP [dm3] 3L_13183534_SNP [dm6]	T	G	8.072e^-4	0.974	INTERGENIC
3L	3706355	3L_3706355_SNP [dm3] 3L_3706355_SNP [dm6]	T	C	8.074e^-4	0.974	INTERGENIC
2L	9674978	2L_9674978_SNP [dm3] 2L_9674978_SNP [dm6]	G	C	8.090e^-4	0.974	INTERGENIC
3R	9648619	3R_9648619_SNP [dm3] 3R_13822897_SNP [dm6]	G	A	8.093e^-4	0.974	INTERGENIC
X	7228270	X_7228270_SNP [dm3] X_7334237_SNP [dm6]	G	T	8.102e^-4	0.974	INTRON CR44357 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
3R	10264880	3R_10264880_SNP [dm3] 3R_14439158_SNP [dm6]	C	A	8.111e^-4	0.974	INTRON cv-c
3L	3786108	3L_3786108_SNP [dm3] 3L_3786108_SNP [dm6]	C	T	8.114e^-4	0.974	INTRON CG32264	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	27069812	3R_27069812_SNP [dm3] 3R_31244090_SNP [dm6]	C	T	8.120e^-4	0.974	INTRON qless
3R	12753792	3R_12753792_SNP [dm3] 3R_16928070_SNP [dm6]	G	T	8.121e^-4	0.974	UTR_3_PRIME Abd-B
2R	10447878	2R_10447878_SNP [dm3] 2R_14560373_SNP [dm6]	G	C	8.122e^-4	0.974	INTRON ttv
2R	8253153	2R_8253153_SNP [dm3] 2R_12365648_SNP [dm6]	A	G	8.136e^-4	0.974	INTRON CR33013
3L	14060881	3L_14060881_SNP [dm3] 3L_14067781_SNP [dm6]	A	G	8.142e^-4	0.974	SYNONYMOUS_CODING CG32138
X	6516511	X_6516511_SNP [dm3] X_6622478_SNP [dm6]	C	T	8.143e^-4	0.974	INTRON pigs	TF binding site BDTNP1_TFBS_da
2R	4927290	2R_4927290_SNP [dm3] 2R_9039785_SNP [dm6]	A	C	8.145e^-4	0.974	UTR_3_PRIME Ance-4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	18171462	3L_18171462_SNP [dm3] 3L_18178362_SNP [dm6]	C	T	8.153e^-4	0.974	INTRON W
2R	16996018	2R_16996018_SNP [dm3] 2R_21108513_SNP [dm6]	T	A	8.166e^-4	0.974	INTRON ktub
3L	3667236	3L_3667236_SNP [dm3] 3L_3667236_SNP [dm6]	G	A	8.182e^-4	0.974	INTERGENIC
3R	12326301	3R_12326301_SNP [dm3] 3R_16500579_SNP [dm6]	T	G	8.199e^-4	0.974	INTRON decay
X	6976718	X_6976718_SNP [dm3] X_7082685_SNP [dm6]	T	C	8.202e^-4	0.974	DOWNSTREAM Sxl INTRON Sxl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13086317	3L_13086317_SNP [dm3] 3L_13093217_SNP [dm6]	C	T	8.218e^-4	0.974	INTERGENIC
3R	21254408	3R_21254408_SNP [dm3] 3R_25428686_SNP [dm6]	T	G	8.228e^-4	0.974	INTRON Fur1
3R	23439944	3R_23439944_SNP [dm3] 3R_27614222_SNP [dm6]	T	A	8.229e^-4	0.974	INTRON Tusp
3L	15848792	3L_15848792_DEL [dm3] 3L_15855692_DEL [dm6]	TT	T	8.235e^-4	0.974	INTRON pHCl
3R	22443163	3R_22443163_SNP [dm3] 3R_26617441_SNP [dm6]	A	T	8.239e^-4	0.974	INTERGENIC
2L	17550655	2L_17550655_SNP [dm3] 2L_17550655_SNP [dm6]	G	A	8.253e^-4	0.974	INTERGENIC
3R	27067791	3R_27067791_SNP [dm3] 3R_31242069_SNP [dm6]	A	T	8.256e^-4	0.974	INTRON qless
3R	27068050	3R_27068050_DEL [dm3] 3R_31242328_DEL [dm6]	AGGGGGAA	A	8.256e^-4	0.974	INTRON qless
3R	27068176	3R_27068176_SNP [dm3] 3R_31242454_SNP [dm6]	C	A	8.256e^-4	0.974	INTRON qless
3R	27068216	3R_27068216_SNP [dm3] 3R_31242494_SNP [dm6]	C	A	8.256e^-4	0.974	INTRON qless
3R	27070011	3R_27070011_SNP [dm3] 3R_31244289_SNP [dm6]	C	A	8.256e^-4	0.974	INTRON qless
2R	12201477	2R_12201477_SNP [dm3] 2R_16313972_SNP [dm6]	A	T	8.260e^-4	0.974	SYNONYMOUS_CODING Nox	TF binding site mE1_TFBS_cad
3L	16057980	3L_16057980_SNP [dm3] 3L_16064880_SNP [dm6]	A	T	8.262e^-4	0.974	INTRON Mbs	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	10141460	3R_10141460_SNP [dm3] 3R_14315738_SNP [dm6]	A	C	8.262e^-4	0.974	UPSTREAM pr-set7 DOWNSTREAM Crz INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
3R	15975362	3R_15975362_INS [dm3] 3R_20149640_INS [dm6]	A	AA	8.266e^-4	0.974	INTERGENIC
X	6516539	X_6516539_SNP [dm3] X_6622506_SNP [dm6]	T	A	8.280e^-4	0.974	INTRON pigs	TF binding site BDTNP1_TFBS_da
3L	5132522	3L_5132522_SNP [dm3] 3L_5139422_SNP [dm6]	T	C	8.301e^-4	0.974	UPSTREAM CHMP2B & 1 other DOWNSTREAM CG4611 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	9717004	2R_9717004_SNP [dm3] 2R_13829499_SNP [dm6]	G	A	8.325e^-4	0.974	UTR_5_PRIME CG6329 INTRON CG6329	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	17621705	3L_17621705_SNP [dm3] 3L_17628605_SNP [dm6]	A	T	8.326e^-4	0.974	SYNONYMOUS_CODING CG7510 DOWNSTREAM scaRNA:MeU4-A65
3L	3105509	3L_3105509_SNP [dm3] 3L_3105509_SNP [dm6]	G	A	8.343e^-4	0.974	INTRON Cht7
3R	24068073	3R_24068073_DEL [dm3] 3R_28242351_DEL [dm6]	TATTAAATATCAT...	T	8.348e^-4	0.974	INTERGENIC
3R	24068097	3R_24068097_SNP [dm3] 3R_28242375_SNP [dm6]	T	C	8.348e^-4	0.974	INTERGENIC
X	9599032	X_9599032_SNP [dm3] X_9704999_SNP [dm6]	C	T	8.360e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10312518	3L_10312518_SNP [dm3] 3L_10319418_SNP [dm6]	T	A	8.361e^-4	0.974	UPSTREAM mir-276b INTERGENIC
2R	9440448	2R_9440448_DEL [dm3] 2R_13552943_DEL [dm6]	TTACTATGTTT...	T	8.364e^-4	0.974	UPSTREAM CG33156 INTRON CG33156
2R	12520824	2R_12520824_SNP [dm3] 2R_16633319_SNP [dm6]	G	C	8.372e^-4	0.974	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	12520866	2R_12520866_SNP [dm3] 2R_16633361_SNP [dm6]	C	G	8.372e^-4	0.974	SYNONYMOUS_CODING Alk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8253150	2R_8253150_SNP [dm3] 2R_12365645_SNP [dm6]	T	G	8.380e^-4	0.974	INTRON CR33013
3R	25425920	3R_25425920_SNP [dm3] 3R_29600198_SNP [dm6]	G	A	8.398e^-4	0.974	SYNONYMOUS_CODING CG7568 DOWNSTREAM alph INTRON alph
3R	20929794	3R_20929794_SNP [dm3] 3R_25104072_SNP [dm6]	C	T	8.416e^-4	0.974	SYNONYMOUS_CODING CG34027 DOWNSTREAM CG45095
3L	5322360	3L_5322360_DEL [dm3] 3L_5329260_DEL [dm6]	GA	G	8.418e^-4	0.974	INTERGENIC
2R	20562928	2R_20562928_SNP [dm3] 2R_24675405_SNP [dm6]	T	A	8.420e^-4	0.974	SYNONYMOUS_CODING Mmp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3R	20664816	3R_20664816_SNP [dm3] 3R_24839094_SNP [dm6]	C	A	8.445e^-4	0.974	INTRON sosie
3R	25798594	3R_25798594_DEL [dm3] 3R_29972872_DEL [dm6]	TCGA	T	8.448e^-4	0.974	INTERGENIC
3R	25798604	3R_25798604_INS [dm3] 3R_29972882_INS [dm6]	A	ATTA	8.448e^-4	0.974	INTERGENIC
3R	3137868	3R_3137868_SNP [dm3] 3R_7312146_SNP [dm6]	C	G	8.451e^-4	0.974	DOWNSTREAM CR44334 INTERGENIC
3R	8152807	3R_8152807_SNP [dm3] 3R_12327085_SNP [dm6]	C	A	8.452e^-4	0.974	UPSTREAM CR45584 INTERGENIC
3R	8152809	3R_8152809_DEL [dm3] 3R_12327087_DEL [dm6]	GG	C	8.452e^-4	0.974	UPSTREAM CR45584 INTERGENIC
2L	2853127	2L_2853127_SNP [dm3] 2L_2853127_SNP [dm6]	T	A	8.465e^-4	0.974	INTRON CG3104
X	12835493	X_12835493_SNP [dm3] X_12941460_SNP [dm6]	A	G	8.475e^-4	0.974	INTRON fne	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h
2R	6734348	2R_6734348_SNP [dm3] 2R_10846843_SNP [dm6]	G	C	8.477e^-4	0.974	INTRON CG30015
3L	18180177	3L_18180177_SNP [dm3] 3L_18187077_SNP [dm6]	C	G	8.481e^-4	0.974	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2L	6605252	2L_6605252_SNP [dm3] 2L_6605252_SNP [dm6]	G	T	8.508e^-4	0.974	INTERGENIC
2R	12520555	2R_12520555_SNP [dm3] 2R_16633050_SNP [dm6]	T	C	8.510e^-4	0.974	INTRON Alk	TF binding site mE1_TFBS_cad
3R	9648445	3R_9648445_SNP [dm3] 3R_13822723_SNP [dm6]	C	T	8.519e^-4	0.974	INTERGENIC
3R	14382074	3R_14382074_SNP [dm3] 3R_18556352_SNP [dm6]	C	G	8.522e^-4	0.974	INTERGENIC
2R	12024685	2R_12024685_SNP [dm3] 2R_16137180_SNP [dm6]	A	G	8.523e^-4	0.974	INTRON spin
2L	1665919	2L_1665919_SNP [dm3] 2L_1665919_SNP [dm6]	T	G	8.539e^-4	0.974	INTRON chinmo
3L	8904549	3L_8904549_SNP [dm3] 3L_8911449_SNP [dm6]	T	C	8.539e^-4	0.974	SPLICE_SITE_REGION mfr SYNONYMOUS_CODING mfr UTR_5_PRIME mfr
3R	20009864	3R_20009864_INS [dm3] 3R_24184142_INS [dm6]	A	AACTCTTA	8.554e^-4	0.974	UTR_3_PRIME CG13606
3L	13087446	3L_13087446_SNP [dm3] 3L_13094346_SNP [dm6]	A	T	8.557e^-4	0.974	INTERGENIC
3R	25426633	3R_25426633_SNP [dm3] 3R_29600911_SNP [dm6]	C	G	8.580e^-4	0.974	UPSTREAM CG7568 INTRON alph
3R	23814730	3R_23814730_SNP [dm3] 3R_27989008_SNP [dm6]	T	A	8.583e^-4	0.974	UPSTREAM betaTub97EF DOWNSTREAM CG4815 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	2616894	3R_2616894_SNP [dm3] 3R_6791172_SNP [dm6]	A	G	8.590e^-4	0.974	UPSTREAM Dfd INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	2641530	3R_2641530_SNP [dm3] 3R_6815808_SNP [dm6]	G	A	8.590e^-4	0.974	INTRON CR42651	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	23124681	3R_23124681_SNP [dm3] 3R_27298959_SNP [dm6]	T	G	8.599e^-4	0.974	INTRON CG3339
3L	18483863	3L_18483863_SNP [dm3] 3L_18490763_SNP [dm6]	T	C	8.604e^-4	0.974	INTRON AstC-R2
2L	1795122	2L_1795122_SNP [dm3] 2L_1795122_SNP [dm6]	G	A	8.607e^-4	0.974	UPSTREAM Gr22a INTERGENIC
3R	20300904	3R_20300904_SNP [dm3] 3R_24475182_SNP [dm6]	T	G	8.612e^-4	0.974	INTERGENIC
2L	6603286	2L_6603286_SNP [dm3] 2L_6603286_SNP [dm6]	C	G	8.613e^-4	0.974	INTERGENIC
X	19072635	X_19072635_DEL [dm3] X_19178602_DEL [dm6]	GCTAACTAAAGG...	G	8.613e^-4	0.974	INTRON CG7556	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3L	18132306	3L_18132306_SNP [dm3] 3L_18139206_SNP [dm6]	T	A	8.621e^-4	0.974	UPSTREAM gk INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	12213319	3L_12213319_SNP [dm3] 3L_12220219_SNP [dm6]	T	C	8.624e^-4	0.974	UTR_5_PRIME app
2R	5737096	2R_5737096_SNP [dm3] 2R_9849591_SNP [dm6]	C	T	8.636e^-4	0.974	SYNONYMOUS_CODING CG1671	TF binding site mE1_TFBS_sens
3R	16873225	3R_16873225_SNP [dm3] 3R_21047503_SNP [dm6]	G	A	8.639e^-4	0.974	UTR_3_PRIME CG7079 UPSTREAM CG31207 DOWNSTREAM CG7079
3L	6807686	3L_6807686_DEL [dm3] 3L_6814586_DEL [dm6]	TTGAAT	T	8.658e^-4	0.974	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18556462	2R_18556462_SNP [dm3] 2R_22668957_SNP [dm6]	T	C	8.662e^-4	0.974	UPSTREAM CG13516 DOWNSTREAM CG30269 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	392833	2R_392833_SNP [dm3] 2R_4505328_SNP [dm6]	T	A	8.682e^-4	0.974	INTERGENIC	transposable element FlyBase
X	8693576	X_8693576_SNP [dm3] X_8799543_SNP [dm6]	G	A	8.703e^-4	0.974	INTRON Lim1	TF binding site BDTNP1_TFBS_prd
3R	18952781	3R_18952781_SNP [dm3] 3R_23127059_SNP [dm6]	G	T	8.718e^-4	0.974	UPSTREAM CG31365 INTRON CG31457	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12085902	3L_12085902_SNP [dm3] 3L_12092802_SNP [dm6]	A	G	8.724e^-4	0.974	INTERGENIC
3R	24803205	3R_24803205_SNP [dm3] 3R_28977483_SNP [dm6]	C	T	8.732e^-4	0.974	INTERGENIC
2R	19560911	2R_19560911_SNP [dm3] 2R_23673388_SNP [dm6]	A	C	8.738e^-4	0.974	SYNONYMOUS_CODING Pde8 INTRON Pde8	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18170519	3L_18170519_SNP [dm3] 3L_18177419_SNP [dm6]	T	A	8.743e^-4	0.974	INTRON W
3L	19323851	3L_19323851_SNP [dm3] 3L_19330751_SNP [dm6]	G	A	8.743e^-4	0.974	INTRON pip	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

LC50_Alpha_Amanitin phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results