DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.470e^-13)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_3R_P	0.01003

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_3R_P	5.1202	0.0773

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1917 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	8124467	2R_8124467_SNP [dm3] 2R_12236962_SNP [dm6]	A	G	1.885e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8124481	2R_8124481_SNP [dm3] 2R_12236976_SNP [dm6]	T	G	2.979e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
X	2707113	X_2707113_SNP [dm3] X_2813080_SNP [dm6]	A	G	3.510e^-6	0.808	INTRON kirre
3L	18109144	3L_18109144_SNP [dm3] 3L_18116044_SNP [dm6]	C	G	3.664e^-6	0.808	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
X	2266612	X_2266612_SNP [dm3] X_2372579_SNP [dm6]	A	T	4.170e^-6	0.808	UTR_3_PRIME PsGEF INTRON PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8124488	2R_8124488_SNP [dm3] 2R_12236983_SNP [dm6]	T	A	4.731e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	660395	2L_660395_SNP [dm3] 2L_660395_SNP [dm6]	C	A	5.784e^-6	0.808	INTRON ds	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3R	20115134	3R_20115134_SNP [dm3] 3R_24289412_SNP [dm6]	A	C	6.066e^-6	0.808	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site mE1_TFBS_HSA
X	5367856	X_5367856_SNP [dm3] X_5473823_SNP [dm6]	A	T	6.304e^-6	0.808	INTRON SPR
2R	8124473	2R_8124473_SNP [dm3] 2R_12236968_SNP [dm6]	A	C	6.482e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8124497	2R_8124497_SNP [dm3] 2R_12236992_SNP [dm6]	G	T	7.897e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18112024	3L_18112024_SNP [dm3] 3L_18118924_SNP [dm6]	C	G	7.905e^-6	0.808	UTR_3_PRIME CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
3L	18112023	3L_18112023_SNP [dm3] 3L_18118923_SNP [dm6]	G	A	8.707e^-6	0.808	UTR_3_PRIME CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
2R	8124458	2R_8124458_SNP [dm3] 2R_12236953_SNP [dm6]	T	C	8.811e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	16665456	2R_16665456_SNP [dm3] 2R_20777951_SNP [dm6]	C	A	8.917e^-6	0.808	UPSTREAM CG43710 DOWNSTREAM CG43711 INTERGENIC
3R	9195632	3R_9195632_SNP [dm3] 3R_13369910_SNP [dm6]	T	C	9.032e^-6	0.808	DOWNSTREAM Dic1 & 1 other INTRON CheA87a
3R	6385465	3R_6385465_SNP [dm3] 3R_10559743_SNP [dm6]	A	G	9.080e^-6	0.808	INTRON hth
2R	8124472	2R_8124472_SNP [dm3] 2R_12236967_SNP [dm6]	A	G	9.226e^-6	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
X	5367861	X_5367861_SNP [dm3] X_5473828_SNP [dm6]	C	T	9.532e^-6	0.808	INTRON SPR
2R	11784257	2R_11784257_SNP [dm3] 2R_15896752_SNP [dm6]	T	C	9.701e^-6	0.808	UPSTREAM CG33463 INTRON sli	TF binding site mE1_TFBS_cad
X	2266611	X_2266611_SNP [dm3] X_2372578_SNP [dm6]	A	T	9.740e^-6	0.808	UTR_3_PRIME PsGEF INTRON PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	9195636	3R_9195636_SNP [dm3] 3R_13369914_SNP [dm6]	A	T	1.017e^-5	0.808	DOWNSTREAM Dic1 & 1 other INTRON CheA87a
2R	8124487	2R_8124487_SNP [dm3] 2R_12236982_SNP [dm6]	G	A	1.044e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	18109193	3L_18109193_DEL [dm3] 3L_18116093_DEL [dm6]	AA	A	1.110e^-5	0.808	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2R	10319981	2R_10319981_SNP [dm3] 2R_14432476_SNP [dm6]	A	G	1.120e^-5	0.808	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
3R	22790433	3R_22790433_SNP [dm3] 3R_26964711_SNP [dm6]	A	T	1.138e^-5	0.808	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	8119607	2R_8119607_SNP [dm3] 2R_12232102_SNP [dm6]	T	C	1.211e^-5	0.808	INTERGENIC
2R	8117968	2R_8117968_SNP [dm3] 2R_12230463_SNP [dm6]	G	A	1.337e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	16241835	3L_16241835_SNP [dm3] 3L_16248735_SNP [dm6]	C	T	1.401e^-5	0.808	DOWNSTREAM CG13055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	16241933	3L_16241933_SNP [dm3] 3L_16248833_SNP [dm6]	C	T	1.443e^-5	0.808	DOWNSTREAM CG13055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	5367855	X_5367855_SNP [dm3] X_5473822_SNP [dm6]	A	G	1.447e^-5	0.808	INTRON SPR
2R	8118979	2R_8118979_SNP [dm3] 2R_12231474_SNP [dm6]	C	T	1.473e^-5	0.808	INTERGENIC
3L	13922660	3L_13922660_SNP [dm3] 3L_13929560_SNP [dm6]	A	G	1.516e^-5	0.808	UPSTREAM CG8833 INTRON Gl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	5850545	X_5850545_SNP [dm3] X_5956512_SNP [dm6]	C	G	1.666e^-5	0.808	INTRON CG6067
2R	8117922	2R_8117922_SNP [dm3] 2R_12230417_SNP [dm6]	A	C	1.683e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	15623343	3R_15623343_SNP [dm3] 3R_19797621_SNP [dm6]	A	C	1.690e^-5	0.808	INTRON bnl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	18109147	3L_18109147_SNP [dm3] 3L_18116047_SNP [dm6]	A	C	1.814e^-5	0.808	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2R	8120391	2R_8120391_SNP [dm3] 2R_12232886_SNP [dm6]	A	T	1.877e^-5	0.808	INTERGENIC
2R	8113708	2R_8113708_SNP [dm3] 2R_12226203_SNP [dm6]	G	T	1.914e^-5	0.808	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	8117938	2R_8117938_SNP [dm3] 2R_12230433_SNP [dm6]	A	C	1.980e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	6260049	X_6260049_SNP [dm3] X_6366016_SNP [dm6]	A	G	2.008e^-5	0.808	START_GAINED Marf UTR_5_PRIME Marf UPSTREAM swa	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Ubx
2R	7838913	2R_7838913_SNP [dm3] 2R_11951408_SNP [dm6]	A	C	2.009e^-5	0.808	INTRON CG13188
3R	20115145	3R_20115145_SNP [dm3] 3R_24289423_SNP [dm6]	G	A	2.072e^-5	0.808	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site mE1_TFBS_HSA
2R	8112997	2R_8112997_SNP [dm3] 2R_12225492_SNP [dm6]	C	G	2.099e^-5	0.808	INTRON CG8854
2R	8669459	2R_8669459_SNP [dm3] 2R_12781954_SNP [dm6]	T	G	2.179e^-5	0.808	INTRON sca	TF binding site BDTNP1_TFBS_dl
2R	8117959	2R_8117959_SNP [dm3] 2R_12230454_SNP [dm6]	C	T	2.179e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8117970	2R_8117970_DEL [dm3] 2R_12230465_DEL [dm6]	TAGTAT	T	2.179e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8124504	2R_8124504_SNP [dm3] 2R_12236999_SNP [dm6]	A	T	2.222e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	12931658	3L_12931658_INS [dm3] 3L_12938558_INS [dm6]	A	ACTT	2.240e^-5	0.808	INTERGENIC
3L	18109155	3L_18109155_SNP [dm3] 3L_18116055_SNP [dm6]	T	A	2.273e^-5	0.808	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2R	8117934	2R_8117934_DEL [dm3] 2R_12230429_DEL [dm6]	TTA	T	2.281e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8117950	2R_8117950_INS [dm3] 2R_12230445_INS [dm6]	T	TTCT	2.281e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24131873	3R_24131873_SNP [dm3] 3R_28306151_SNP [dm6]	T	C	2.329e^-5	0.808	INTERGENIC
2R	8117958	2R_8117958_SNP [dm3] 2R_12230453_SNP [dm6]	C	A	2.395e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
X	5710688	X_5710688_SNP [dm3] X_5816655_SNP [dm6]	T	C	2.478e^-5	0.808	UPSTREAM CG15766 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8118689	2R_8118689_DEL [dm3] 2R_12231184_DEL [dm6]	ACTATGTATCCTAAAGATAT...	A	2.583e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	4895154	2L_4895154_SNP [dm3] 2L_4895154_SNP [dm6]	A	C	2.663e^-5	0.808	INTRON CG3036
3L	18093070	3L_18093070_SNP [dm3] 3L_18099970_SNP [dm6]	C	T	2.793e^-5	0.808	INTRON CG13698
2R	8112985	2R_8112985_SNP [dm3] 2R_12225480_SNP [dm6]	G	T	2.832e^-5	0.808	INTRON CG8854
2R	8117933	2R_8117933_SNP [dm3] 2R_12230428_SNP [dm6]	C	A	2.925e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11708952	2R_11708952_SNP [dm3] 2R_15821447_SNP [dm6]	T	C	2.941e^-5	0.808	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	14411994	X_14411994_SNP [dm3] X_14517961_SNP [dm6]	G	T	3.021e^-5	0.808	INTRON CR44110	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	3832062	2L_3832062_SNP [dm3] 2L_3832062_SNP [dm6]	T	A	3.079e^-5	0.808	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE
3L	16240056	3L_16240056_SNP [dm3] 3L_16246956_SNP [dm6]	G	A	3.092e^-5	0.808	INTERGENIC
2R	8117930	2R_8117930_SNP [dm3] 2R_12230425_SNP [dm6]	C	G	3.098e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1321254	3L_1321254_SNP [dm3] 3L_1321254_SNP [dm6]	G	A	3.125e^-5	0.808	DOWNSTREAM CG9184 INTRON Myo61F
3L	14237250	3L_14237250_SNP [dm3] 3L_14244150_SNP [dm6]	G	A	3.127e^-5	0.808	DOWNSTREAM CR44561 INTERGENIC
3R	26544416	3R_26544416_SNP [dm3] 3R_30718694_SNP [dm6]	G	A	3.213e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	11708755	2R_11708755_DEL [dm3] 2R_15821250_DEL [dm6]	AT	A	3.257e^-5	0.808	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	20530667	3L_20530667_DEL [dm3] 3L_20537567_DEL [dm6]	TAT	T	3.305e^-5	0.808	INTRON Rcd2
2R	8118725	2R_8118725_SNP [dm3] 2R_12231220_SNP [dm6]	A	T	3.432e^-5	0.808	INTERGENIC
2R	8117929	2R_8117929_SNP [dm3] 2R_12230424_SNP [dm6]	G	T	3.443e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	21917558	3L_21917558_SNP [dm3] 3L_21924458_SNP [dm6]	T	G	3.471e^-5	0.808	DOWNSTREAM mub INTRON mub
3R	22790443	3R_22790443_SNP [dm3] 3R_26964721_SNP [dm6]	A	C	3.526e^-5	0.808	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
2R	10319990	2R_10319990_SNP [dm3] 2R_14432485_SNP [dm6]	A	G	3.582e^-5	0.808	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	8120283	2R_8120283_SNP [dm3] 2R_12232778_SNP [dm6]	A	G	3.584e^-5	0.808	INTERGENIC
2R	8117948	2R_8117948_SNP [dm3] 2R_12230443_SNP [dm6]	A	T	3.633e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8119562	2R_8119562_SNP [dm3] 2R_12232057_SNP [dm6]	A	T	3.646e^-5	0.808	INTERGENIC
3L	18109159	3L_18109159_SNP [dm3] 3L_18116059_SNP [dm6]	G	A	3.673e^-5	0.808	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2R	18455306	2R_18455306_SNP [dm3] 2R_22567801_SNP [dm6]	T	G	3.679e^-5	0.808	INTRON dnr1
3R	20113116	3R_20113116_SNP [dm3] 3R_24287394_SNP [dm6]	G	T	3.742e^-5	0.808	INTRON CG6356
3R	20115133	3R_20115133_SNP [dm3] 3R_24289411_SNP [dm6]	A	G	3.762e^-5	0.808	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site mE1_TFBS_HSA
2R	8117308	2R_8117308_SNP [dm3] 2R_12229803_SNP [dm6]	G	A	3.779e^-5	0.808	UPSTREAM CG8854 INTERGENIC
3L	11338090	3L_11338090_SNP [dm3] 3L_11344990_SNP [dm6]	T	C	3.839e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	4118965	2R_4118965_SNP [dm3] 2R_8231460_SNP [dm6]	G	T	3.860e^-5	0.808	DOWNSTREAM CR44275 INTRON dpn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
2R	8118777	2R_8118777_SNP [dm3] 2R_12231272_SNP [dm6]	C	G	3.939e^-5	0.808	INTERGENIC
3R	23976735	3R_23976735_SNP [dm3] 3R_28151013_SNP [dm6]	T	G	3.980e^-5	0.808	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16792158	3R_16792158_SNP [dm3] 3R_20966436_SNP [dm6]	C	T	3.992e^-5	0.808	SYNONYMOUS_CODING Atpalpha
3L	1592404	3L_1592404_SNP [dm3] 3L_1592404_SNP [dm6]	G	A	4.038e^-5	0.808	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
2R	11708754	2R_11708754_SNP [dm3] 2R_15821249_SNP [dm6]	A	T	4.100e^-5	0.808	UPSTREAM CG33465 INTRON tun	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	8571637	3L_8571637_SNP [dm3] 3L_8578537_SNP [dm6]	C	T	4.141e^-5	0.808	START_GAINED CG43078 UTR_5_PRIME CG43078 UPSTREAM CG43078
2R	8117977	2R_8117977_MNP [dm3] 2R_12230472_MNP [dm6]	TATA	CCGG	4.188e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	14938112	3R_14938112_SNP [dm3] 3R_19112390_SNP [dm6]	A	G	4.202e^-5	0.808	INTRON CG6040
3L	8262377	3L_8262377_SNP [dm3] 3L_8269277_SNP [dm6]	C	G	4.216e^-5	0.808	INTRON Dscam4
2R	3079375	2R_3079375_SNP [dm3] 2R_7191870_SNP [dm6]	T	C	4.346e^-5	0.808	INTRON pk	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8117987	2R_8117987_SNP [dm3] 2R_12230482_SNP [dm6]	T	G	4.426e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
2L	7302446	2L_7302446_SNP [dm3] 2L_7302446_SNP [dm6]	T	C	4.441e^-5	0.808	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	24537389	3R_24537389_SNP [dm3] 3R_28711667_SNP [dm6]	C	A	4.454e^-5	0.808	INTRON htt
2R	8119392	2R_8119392_SNP [dm3] 2R_12231887_SNP [dm6]	T	G	4.457e^-5	0.808	INTERGENIC
3R	17040003	3R_17040003_INS [dm3] 3R_21214281_INS [dm6]	A	AGA	4.531e^-5	0.808	UPSTREAM CG5862 DOWNSTREAM SNF4Agamma INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	8117756	2R_8117756_SNP [dm3] 2R_12230251_SNP [dm6]	A	T	4.560e^-5	0.808	UPSTREAM CG8854 INTERGENIC
2R	8117988	2R_8117988_DEL [dm3] 2R_12230483_DEL [dm6]	ATATCTTT	A	4.570e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	1592444	3L_1592444_SNP [dm3] 3L_1592444_SNP [dm6]	A	C	4.589e^-5	0.808	INTRON CG13917	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_Trl
3L	17932183	3L_17932183_SNP [dm3] 3L_17939083_SNP [dm6]	C	A	4.595e^-5	0.808	INTRON CG43174
3R	23976856	3R_23976856_SNP [dm3] 3R_28151134_SNP [dm6]	A	G	4.642e^-5	0.808	INTRON CG34354
3R	15162919	3R_15162919_INS [dm3] 3R_19337197_INS [dm6]	G	GGTG	4.654e^-5	0.808	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8118023	2R_8118023_SNP [dm3] 2R_12230518_SNP [dm6]	G	A	4.665e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_da
3L	13182626	3L_13182626_SNP [dm3] 3L_13189526_SNP [dm6]	G	T	4.665e^-5	0.808	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	21380294	3R_21380294_SNP [dm3] 3R_25554572_SNP [dm6]	C	A	4.697e^-5	0.808	INTRON msi
2R	8545354	2R_8545354_SNP [dm3] 2R_12657849_SNP [dm6]	A	G	4.774e^-5	0.808	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3R	25360360	3R_25360360_SNP [dm3] 3R_29534638_SNP [dm6]	C	T	4.798e^-5	0.808	EXON CR43613	TF binding site mE1_TFBS_chinmo
3R	2100929	3R_2100929_SNP [dm3] 3R_6275207_SNP [dm6]	C	A	4.825e^-5	0.808	INTERGENIC
X	21215665	X_21215665_SNP [dm3] X_21344638_SNP [dm6]	T	A	4.963e^-5	0.82	UTR_3_PRIME fliI UPSTREAM dod	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2R	8124751	2R_8124751_SNP [dm3] 2R_12237246_SNP [dm6]	T	G	4.995e^-5	0.82	INTERGENIC
2R	8118773	2R_8118773_SNP [dm3] 2R_12231268_SNP [dm6]	C	T	5.033e^-5	0.82	INTERGENIC
3R	20113119	3R_20113119_SNP [dm3] 3R_24287397_SNP [dm6]	A	G	5.072e^-5	0.82	INTRON CG6356
X	9293649	X_9293649_SNP [dm3] X_9399616_SNP [dm6]	T	C	5.279e^-5	0.829	INTRON mgl
3L	16241856	3L_16241856_SNP [dm3] 3L_16248756_SNP [dm6]	C	G	5.307e^-5	0.829	DOWNSTREAM CG13055 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26544413	3R_26544413_SNP [dm3] 3R_30718691_SNP [dm6]	G	A	5.372e^-5	0.829	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8447516	2R_8447516_SNP [dm3] 2R_12560011_SNP [dm6]	T	G	5.385e^-5	0.829	SYNONYMOUS_CODING fra
3R	20113128	3R_20113128_DEL [dm3] 3R_24287406_DEL [dm6]	TACCTATATGT...	T	5.390e^-5	0.829	INTRON CG6356
X	1082810	X_1082810_SNP [dm3] X_1188777_SNP [dm6]	C	A	5.425e^-5	0.829	DOWNSTREAM CG14626 INTERGENIC
3L	16231696	3L_16231696_SNP [dm3] 3L_16238596_SNP [dm6]	T	C	5.450e^-5	0.829	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad
2R	8118778	2R_8118778_SNP [dm3] 2R_12231273_SNP [dm6]	A	T	5.512e^-5	0.829	INTERGENIC
3L	18109125	3L_18109125_DEL [dm3] 3L_18116025_DEL [dm6]	GT	G	5.551e^-5	0.829	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
2L	3241161	2L_3241161_SNP [dm3] 2L_3241161_SNP [dm6]	G	C	5.587e^-5	0.829	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	20203702	3R_20203702_SNP [dm3] 3R_24377980_SNP [dm6]	T	C	5.634e^-5	0.829	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	9195544	3R_9195544_SNP [dm3] 3R_13369822_SNP [dm6]	A	G	5.660e^-5	0.829	NON_SYNONYMOUS_CODING CheA87a DOWNSTREAM Dic1 & 1 other
3R	25331463	3R_25331463_SNP [dm3] 3R_29505741_SNP [dm6]	G	C	5.729e^-5	0.829	INTERGENIC
2R	10912554	2R_10912554_SNP [dm3] 2R_15025049_SNP [dm6]	G	A	5.747e^-5	0.829	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	7303946	2L_7303946_SNP [dm3] 2L_7303946_SNP [dm6]	G	A	5.962e^-5	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18112491	3L_18112491_SNP [dm3] 3L_18119391_SNP [dm6]	A	G	6.068e^-5	0.837	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
3R	929231	3R_929231_SNP [dm3] 3R_5103509_SNP [dm6]	T	G	6.115e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	9201555	X_9201555_DEL [dm3] X_9307522_DEL [dm6]	AGTCCAAGCG	A	6.235e^-5	0.837	INTERGENIC
3L	11290933	3L_11290933_DEL [dm3] 3L_11297833_DEL [dm6]	TGAAT	T	6.270e^-5	0.837	INTERGENIC
3L	11290965	3L_11290965_DEL [dm3] 3L_11297865_DEL [dm6]	GAA	T	6.270e^-5	0.837	INTERGENIC
3L	18107407	3L_18107407_SNP [dm3] 3L_18114307_SNP [dm6]	C	A	6.307e^-5	0.837	UTR_5_PRIME CG32195 INTRON CG32195 & 1 other
3R	26256237	3R_26256237_SNP [dm3] 3R_30430515_SNP [dm6]	G	A	6.342e^-5	0.837	SYNONYMOUS_CODING CG15533	TF binding site mE1_TFBS_cad
3L	6834281	3L_6834281_SNP [dm3] 3L_6841181_SNP [dm6]	C	G	6.351e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
3R	19806510	3R_19806510_SNP [dm3] 3R_23980788_SNP [dm6]	C	G	6.368e^-5	0.837	SYNONYMOUS_CODING CG31140 UTR_3_PRIME CG31140 INTRON CG31140
3L	18109183	3L_18109183_SNP [dm3] 3L_18116083_SNP [dm6]	G	A	6.445e^-5	0.837	UTR_3_PRIME CG32195 DOWNSTREAM CG32195 INTRON CG7341
3L	18800449	3L_18800449_SNP [dm3] 3L_18807349_SNP [dm6]	C	T	6.562e^-5	0.837	SYNONYMOUS_CODING CG14073	TF binding site mE1_TFBS_cad
3L	18109060	3L_18109060_SNP [dm3] 3L_18115960_SNP [dm6]	G	T	6.642e^-5	0.837	UTR_3_PRIME CG32195 INTRON CG7341
2R	8121896	2R_8121896_SNP [dm3] 2R_12234391_SNP [dm6]	A	G	6.677e^-5	0.837	EXON CR44313
2R	8124370	2R_8124370_SNP [dm3] 2R_12236865_SNP [dm6]	G	A	6.722e^-5	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8639712	2R_8639712_SNP [dm3] 2R_12752207_SNP [dm6]	T	C	6.734e^-5	0.837	SYNONYMOUS_CODING mos DOWNSTREAM CG42663 & 1 other
2R	8124452	2R_8124452_SNP [dm3] 2R_12236947_SNP [dm6]	T	G	6.750e^-5	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	12054621	2R_12054621_SNP [dm3] 2R_16167116_SNP [dm6]	C	G	6.779e^-5	0.837	SYNONYMOUS_CODING lbk	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14667354	2R_14667354_SNP [dm3] 2R_18779849_SNP [dm6]	G	T	6.781e^-5	0.837	INTERGENIC
2R	8113100	2R_8113100_SNP [dm3] 2R_12225595_SNP [dm6]	C	A	6.799e^-5	0.837	INTRON CG8854
2R	18418285	2R_18418285_SNP [dm3] 2R_22530780_SNP [dm6]	G	T	6.819e^-5	0.837	INTRON px
2R	8118775	2R_8118775_SNP [dm3] 2R_12231270_SNP [dm6]	T	C	6.995e^-5	0.837	INTERGENIC
2R	8117983	2R_8117983_SNP [dm3] 2R_12230478_SNP [dm6]	C	G	7.033e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8120282	2R_8120282_SNP [dm3] 2R_12232777_SNP [dm6]	T	G	7.061e^-5	0.837	INTERGENIC
X	9201567	X_9201567_SNP [dm3] X_9307534_SNP [dm6]	G	A	7.069e^-5	0.837	INTERGENIC
2R	14541268	2R_14541268_SNP [dm3] 2R_18653763_SNP [dm6]	A	G	7.162e^-5	0.837	UPSTREAM SP2637 INTRON SP2637	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8117911	2R_8117911_SNP [dm3] 2R_12230406_SNP [dm6]	A	C	7.204e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8115914	2R_8115914_SNP [dm3] 2R_12228409_SNP [dm6]	T	A	7.224e^-5	0.837	INTRON CG8854
X	9095119	X_9095119_SNP [dm3] X_9201086_SNP [dm6]	T	G	7.283e^-5	0.837	INTRON su_r_
3L	9192943	3L_9192943_SNP [dm3] 3L_9199843_SNP [dm6]	G	A	7.346e^-5	0.837	INTERGENIC
2R	14512955	2R_14512955_SNP [dm3] 2R_18625450_SNP [dm6]	C	T	7.402e^-5	0.837	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6628787	2L_6628787_SNP [dm3] 2L_6628787_SNP [dm6]	T	G	7.451e^-5	0.837	NON_SYNONYMOUS_CODING Oatp26F	TF binding site mE1_TFBS_cad
2R	8115912	2R_8115912_SNP [dm3] 2R_12228407_SNP [dm6]	T	A	7.537e^-5	0.837	INTRON CG8854
3L	18102818	3L_18102818_SNP [dm3] 3L_18109718_SNP [dm6]	C	T	7.557e^-5	0.837	UPSTREAM mus304 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3R	15969407	3R_15969407_DEL [dm3] 3R_20143685_DEL [dm6]	TAAATAA	T	7.631e^-5	0.837	INTERGENIC
3L	14613544	3L_14613544_SNP [dm3] 3L_14620444_SNP [dm6]	A	G	7.636e^-5	0.837	SYNONYMOUS_CODING shd	TF binding site mE1_TFBS_HSA
3R	18752990	3R_18752990_SNP [dm3] 3R_22927268_SNP [dm6]	G	T	7.713e^-5	0.837	INTRON klg
2R	3089808	2R_3089808_SNP [dm3] 2R_7202303_SNP [dm6]	G	T	7.786e^-5	0.837	INTRON pk
X	14411990	X_14411990_SNP [dm3] X_14517957_SNP [dm6]	T	G	7.920e^-5	0.837	INTRON CR44110	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8415712	X_8415712_SNP [dm3] X_8521679_SNP [dm6]	A	C	8.084e^-5	0.837	INTRON Nrg
3R	25536663	3R_25536663_SNP [dm3] 3R_29710941_SNP [dm6]	T	A	8.092e^-5	0.837	INTERGENIC
X	6639874	X_6639874_SNP [dm3] X_6745841_SNP [dm6]	C	T	8.135e^-5	0.837	DOWNSTREAM CR44964 EXON CR44895
3R	16485752	3R_16485752_SNP [dm3] 3R_20660030_SNP [dm6]	G	C	8.159e^-5	0.837	UPSTREAM Nep4 INTERGENIC
X	2266591	X_2266591_SNP [dm3] X_2372558_SNP [dm6]	T	C	8.291e^-5	0.837	UTR_3_PRIME PsGEF INTRON PsGEF	TF binding site mE1_TFBS_HSA
3L	21810273	3L_21810273_SNP [dm3] 3L_21817173_SNP [dm6]	C	A	8.369e^-5	0.837	NON_SYNONYMOUS_CODING eg	TF binding site mE1_TFBS_cad
2R	11873805	2R_11873805_SNP [dm3] 2R_15986300_SNP [dm6]	C	A	8.477e^-5	0.837	INTRON Strn-Mlck
3L	13182624	3L_13182624_SNP [dm3] 3L_13189524_SNP [dm6]	A	G	8.495e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7303951	2L_7303951_SNP [dm3] 2L_7303951_SNP [dm6]	T	C	8.532e^-5	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	8025613	3L_8025613_SNP [dm3] 3L_8032513_SNP [dm6]	C	A	8.579e^-5	0.837	INTRON nmo
X	13562404	X_13562404_SNP [dm3] X_13668371_SNP [dm6]	C	T	8.649e^-5	0.837	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	11564249	2R_11564249_SNP [dm3] 2R_15676744_SNP [dm6]	T	A	8.691e^-5	0.837	UPSTREAM fus DOWNSTREAM CG8207 EXON CR45143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	11664722	2R_11664722_SNP [dm3] 2R_15777217_SNP [dm6]	G	A	8.697e^-5	0.837	SYNONYMOUS_CODING Zasp52
3R	804798	3R_804798_INS [dm3] 3R_4979076_INS [dm6]	T	TCTGTCCGT	8.723e^-5	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3L	10182839	3L_10182839_SNP [dm3] 3L_10189739_SNP [dm6]	A	G	8.797e^-5	0.837	DOWNSTREAM ect INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Kr
3L	18098016	3L_18098016_SNP [dm3] 3L_18104916_SNP [dm6]	G	C	8.820e^-5	0.837	INTRON CG13698
X	5304207	X_5304207_SNP [dm3] X_5410174_SNP [dm6]	G	C	8.874e^-5	0.837	INTRON NAAT1
3L	19374592	3L_19374592_SNP [dm3] 3L_19381492_SNP [dm6]	G	T	8.906e^-5	0.837	SYNONYMOUS_CODING CG32206
2L	1262702	2L_1262702_SNP [dm3] 2L_1262702_SNP [dm6]	A	T	8.947e^-5	0.837	INTRON robo3
3R	24953517	3R_24953517_SNP [dm3] 3R_29127795_SNP [dm6]	G	A	9.016e^-5	0.837	SYNONYMOUS_CODING CG11880 DOWNSTREAM dgt6	TF binding site mE1_TFBS_cad
3R	20115136	3R_20115136_SNP [dm3] 3R_24289414_SNP [dm6]	C	A	9.177e^-5	0.837	UPSTREAM CG6364 DOWNSTREAM CG6356 INTRON CG34290	TF binding site mE1_TFBS_HSA
X	2563847	X_2563847_SNP [dm3] X_2669814_SNP [dm6]	G	A	9.325e^-5	0.837	INTRON sgg
3L	13040715	3L_13040715_SNP [dm3] 3L_13047615_SNP [dm6]	C	T	9.402e^-5	0.837	UTR_3_PRIME CG11279 DOWNSTREAM Syx13 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18563301	2R_18563301_SNP [dm3] 2R_22675796_SNP [dm6]	A	C	9.432e^-5	0.837	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo
X	14412026	X_14412026_INS [dm3] X_14517993_INS [dm6]	T	TATCCAATT	9.442e^-5	0.837	INTRON CR44110	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6208341	2L_6208341_SNP [dm3] 2L_6208341_SNP [dm6]	C	A	9.471e^-5	0.837	SYNONYMOUS_CODING CG34380	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18062583	3L_18062583_SNP [dm3] 3L_18069483_SNP [dm6]	C	T	9.490e^-5	0.837	NON_SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2R	7292606	2R_7292606_SNP [dm3] 2R_11405101_SNP [dm6]	C	G	9.506e^-5	0.837	UPSTREAM CG7759 DOWNSTREAM tRNA:CR45107 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	8262408	3L_8262408_SNP [dm3] 3L_8269308_SNP [dm6]	C	G	9.529e^-5	0.837	INTRON Dscam4
2R	11564359	2R_11564359_SNP [dm3] 2R_15676854_SNP [dm6]	G	A	9.537e^-5	0.837	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	16578188	3R_16578188_SNP [dm3] 3R_20752466_SNP [dm6]	G	T	9.537e^-5	0.837	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
3R	27448243	3R_27448243_SNP [dm3] 3R_31622521_SNP [dm6]	C	G	9.546e^-5	0.837	UTR_5_PRIME kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
3R	26086416	3R_26086416_SNP [dm3] 3R_30260694_SNP [dm6]	C	T	9.588e^-5	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	8262386	3L_8262386_SNP [dm3] 3L_8269286_SNP [dm6]	A	G	9.670e^-5	0.837	INTRON Dscam4
2L	19944953	2L_19944953_SNP [dm3] 2L_19944953_SNP [dm6]	A	G	9.703e^-5	0.837	INTRON sick
2R	8109756	2R_8109756_SNP [dm3] 2R_12222251_SNP [dm6]	A	G	9.829e^-5	0.837	INTERGENIC
2L	7317189	2L_7317189_SNP [dm3] 2L_7317189_SNP [dm6]	C	T	9.943e^-5	0.837	DOWNSTREAM wg INTERGENIC
3R	25537310	3R_25537310_SNP [dm3] 3R_29711588_SNP [dm6]	T	A	9.997e^-5	0.837	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	19855692	3R_19855692_SNP [dm3] 3R_24029970_SNP [dm6]	T	G	1.003e^-4	0.837	INTRON KrT95D
3L	14237199	3L_14237199_SNP [dm3] 3L_14244099_SNP [dm6]	A	T	1.005e^-4	0.837	DOWNSTREAM CR44561 INTERGENIC
X	9095081	X_9095081_SNP [dm3] X_9201048_SNP [dm6]	T	G	1.006e^-4	0.837	INTRON su_r_
3R	17212586	3R_17212586_SNP [dm3] 3R_21386864_SNP [dm6]	A	T	1.007e^-4	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3R	18262367	3R_18262367_SNP [dm3] 3R_22436645_SNP [dm6]	G	A	1.012e^-4	0.837	UPSTREAM CG13847 INTERGENIC
2R	8115887	2R_8115887_SNP [dm3] 2R_12228382_SNP [dm6]	T	A	1.014e^-4	0.837	INTRON CG8854
3L	14237273	3L_14237273_SNP [dm3] 3L_14244173_SNP [dm6]	C	T	1.016e^-4	0.837	DOWNSTREAM CR44561 INTERGENIC
3L	13922665	3L_13922665_SNP [dm3] 3L_13929565_SNP [dm6]	A	T	1.025e^-4	0.837	UPSTREAM CG8833 INTRON Gl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_zfh1
X	2266728	X_2266728_SNP [dm3] X_2372695_SNP [dm6]	C	T	1.027e^-4	0.837	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11873084	2R_11873084_SNP [dm3] 2R_15985579_SNP [dm6]	C	T	1.029e^-4	0.837	SYNONYMOUS_CODING Strn-Mlck
2R	14666971	2R_14666971_SNP [dm3] 2R_18779466_SNP [dm6]	C	T	1.030e^-4	0.837	INTERGENIC
3R	22430435	3R_22430435_SNP [dm3] 3R_26604713_SNP [dm6]	T	G	1.033e^-4	0.837	DOWNSTREAM scrib INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8117231	2R_8117231_DEL [dm3] 2R_12229726_DEL [dm6]	TCAT	T	1.034e^-4	0.837	UPSTREAM CG8854 INTERGENIC
3L	2739802	3L_2739802_SNP [dm3] 3L_2739802_SNP [dm6]	T	C	1.049e^-4	0.837	SYNONYMOUS_CODING Acp62F INTRON Mrtf
3L	1847930	3L_1847930_SNP [dm3] 3L_1847930_SNP [dm6]	A	T	1.053e^-4	0.837	INTERGENIC
3R	9590202	3R_9590202_SNP [dm3] 3R_13764480_SNP [dm6]	G	A	1.064e^-4	0.837	UTR_3_PRIME CG34383
3L	11282139	3L_11282139_SNP [dm3] 3L_11289039_SNP [dm6]	T	C	1.064e^-4	0.837	NON_SYNONYMOUS_CODING CG6175
2R	8543983	2R_8543983_SNP [dm3] 2R_12656478_SNP [dm6]	C	A	1.070e^-4	0.837	DOWNSTREAM ZnT49B INTRON CG8646
2R	8541377	2R_8541377_SNP [dm3] 2R_12653872_SNP [dm6]	T	C	1.078e^-4	0.837	SYNONYMOUS_CODING ZnT49B	TF binding site mE1_TFBS_sens
X	13585381	X_13585381_SNP [dm3] X_13691348_SNP [dm6]	G	C	1.087e^-4	0.837	UPSTREAM NnaD INTRON CG9940
2R	8109605	2R_8109605_SNP [dm3] 2R_12222100_SNP [dm6]	C	A	1.088e^-4	0.837	INTERGENIC
3L	21927466	3L_21927466_SNP [dm3] 3L_21934366_SNP [dm6]	G	A	1.096e^-4	0.837	UPSTREAM CG7442 INTERGENIC
3L	1362517	3L_1362517_SNP [dm3] 3L_1362517_SNP [dm6]	A	C	1.098e^-4	0.837	INTRON Ptp61F	TF binding site mE1_TFBS_HSA
3R	9740575	3R_9740575_SNP [dm3] 3R_13914853_SNP [dm6]	A	C	1.099e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	26345783	3R_26345783_SNP [dm3] 3R_30520061_SNP [dm6]	G	C	1.100e^-4	0.837	INTRON jdp
3R	20112930	3R_20112930_SNP [dm3] 3R_24287208_SNP [dm6]	C	T	1.100e^-4	0.837	INTRON CG6356	TF binding site mE1_TFBS_inv
3L	18061420	3L_18061420_SNP [dm3] 3L_18068320_SNP [dm6]	C	T	1.102e^-4	0.837	DOWNSTREAM CG44006 INTERGENIC
2R	8123177	2R_8123177_SNP [dm3] 2R_12235672_SNP [dm6]	C	T	1.103e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	14469181	3L_14469181_SNP [dm3] 3L_14476081_SNP [dm6]	T	A	1.103e^-4	0.837	INTRON bbg
3R	19168084	3R_19168084_SNP [dm3] 3R_23342362_SNP [dm6]	A	G	1.103e^-4	0.837	INTRON pnt	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
2R	8541373	2R_8541373_SNP [dm3] 2R_12653868_SNP [dm6]	C	T	1.111e^-4	0.837	SYNONYMOUS_CODING ZnT49B	TF binding site mE1_TFBS_sens
2R	17528443	2R_17528443_SNP [dm3] 2R_21640938_SNP [dm6]	T	C	1.117e^-4	0.837	INTERGENIC
3R	18753268	3R_18753268_INS [dm3] 3R_22927546_INS [dm6]	C	ATTA	1.121e^-4	0.837	INTRON klg
2R	8024331	2R_8024331_SNP [dm3] 2R_12136826_SNP [dm6]	A	T	1.131e^-4	0.837	INTERGENIC
3L	12931689	3L_12931689_SNP [dm3] 3L_12938589_SNP [dm6]	G	A	1.132e^-4	0.837	INTERGENIC
2L	3708150	2L_3708150_SNP [dm3] 2L_3708150_SNP [dm6]	A	G	1.135e^-4	0.837	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
X	8415694	X_8415694_SNP [dm3] X_8521661_SNP [dm6]	T	C	1.139e^-4	0.837	INTRON Nrg
X	5367764	X_5367764_SNP [dm3] X_5473731_SNP [dm6]	T	C	1.145e^-4	0.837	INTRON SPR
3L	5891949	3L_5891949_SNP [dm3] 3L_5898849_SNP [dm6]	C	T	1.148e^-4	0.837	SYNONYMOUS_CODING CG5592 UPSTREAM CG32409	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	8639717	2R_8639717_SNP [dm3] 2R_12752212_SNP [dm6]	G	A	1.148e^-4	0.837	SYNONYMOUS_CODING mos DOWNSTREAM CG42663 & 1 other
X	20827614	X_20827614_SNP [dm3] X_20956587_SNP [dm6]	T	A	1.149e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
3L	14613517	3L_14613517_SNP [dm3] 3L_14620417_SNP [dm6]	C	A	1.150e^-4	0.837	SYNONYMOUS_CODING shd
3R	3594755	3R_3594755_SNP [dm3] 3R_7769033_SNP [dm6]	C	T	1.161e^-4	0.837	INTERGENIC
2L	640496	2L_640496_SNP [dm3] 2L_640496_SNP [dm6]	T	G	1.162e^-4	0.837	UTR_3_PRIME ds	TF binding site mE1_TFBS_cad
3L	11290969	3L_11290969_SNP [dm3] 3L_11297869_SNP [dm6]	T	A	1.169e^-4	0.837	INTERGENIC
2R	18562127	2R_18562127_SNP [dm3] 2R_22674622_SNP [dm6]	T	A	1.177e^-4	0.837	UPSTREAM CR44761 INTERGENIC	enhancer mE1_CBP_Enhancers
2R	14512952	2R_14512952_SNP [dm3] 2R_18625447_SNP [dm6]	C	T	1.182e^-4	0.837	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8115876	2R_8115876_SNP [dm3] 2R_12228371_SNP [dm6]	T	C	1.187e^-4	0.837	INTRON CG8854
X	17445494	X_17445494_SNP [dm3] X_17551461_SNP [dm6]	G	T	1.192e^-4	0.837	INTRON CG43658
2R	19182608	2R_19182608_SNP [dm3] 2R_23295085_SNP [dm6]	A	T	1.195e^-4	0.837	INTERGENIC
3R	15623786	3R_15623786_INS [dm3] 3R_19798064_INS [dm6]	C	CACTAGCCGGC...	1.195e^-4	0.837	INTRON bnl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	14511131	3R_14511131_SNP [dm3] 3R_18685409_SNP [dm6]	T	A	1.205e^-4	0.837	UTR_3_PRIME CG7708 DOWNSTREAM CG7708
3R	15709360	3R_15709360_SNP [dm3] 3R_19883638_SNP [dm6]	C	T	1.210e^-4	0.837	SYNONYMOUS_CODING Pk92B	TF binding site mE1_TFBS_cad
2R	8112670	2R_8112670_SNP [dm3] 2R_12225165_SNP [dm6]	C	T	1.213e^-4	0.837	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo
2R	8117917	2R_8117917_SNP [dm3] 2R_12230412_SNP [dm6]	C	T	1.214e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	18347364	2R_18347364_INS [dm3] 2R_22459859_INS [dm6]	A	AA	1.214e^-4	0.837	INTRON CG10384
3L	8396707	3L_8396707_SNP [dm3] 3L_8403607_SNP [dm6]	C	A	1.224e^-4	0.837	NON_SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
2R	8124392	2R_8124392_DEL [dm3] 2R_12236887_DEL [dm6]	AATGC	A	1.228e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA
X	1425785	X_1425785_SNP [dm3] X_1531752_SNP [dm6]	T	G	1.242e^-4	0.837	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
X	13339130	X_13339130_INS [dm3] X_13445097_INS [dm6]	T	TGCGCAGTGT	1.249e^-4	0.837	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	14883600	2R_14883600_SNP [dm3] 2R_18996095_SNP [dm6]	T	A	1.250e^-4	0.837	INTRON tn
2R	8118110	2R_8118110_SNP [dm3] 2R_12230605_SNP [dm6]	C	T	1.250e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	7542549	3L_7542549_SNP [dm3] 3L_7549449_SNP [dm6]	A	C	1.252e^-4	0.837	INTERGENIC
2R	9454723	2R_9454723_SNP [dm3] 2R_13567218_SNP [dm6]	C	A	1.263e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Stat92E mE1_TFBS_zfh1
2L	9907239	2L_9907239_SNP [dm3] 2L_9907239_SNP [dm6]	C	T	1.265e^-4	0.837	UTR_5_PRIME CG13124	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23976724	3R_23976724_SNP [dm3] 3R_28151002_SNP [dm6]	G	T	1.266e^-4	0.837	INTRON CG34354	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	16823304	3R_16823304_SNP [dm3] 3R_20997582_SNP [dm6]	T	G	1.266e^-4	0.837	INTRON Calx
2R	8117907	2R_8117907_SNP [dm3] 2R_12230402_SNP [dm6]	T	G	1.275e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	6393609	3R_6393609_SNP [dm3] 3R_10567887_SNP [dm6]	A	G	1.282e^-4	0.837	INTRON hth
2R	8111214	2R_8111214_SNP [dm3] 2R_12223709_SNP [dm6]	T	G	1.286e^-4	0.837	DOWNSTREAM CG8854 INTERGENIC
3R	25379126	3R_25379126_SNP [dm3] 3R_29553404_SNP [dm6]	C	T	1.298e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3R	24977657	3R_24977657_SNP [dm3] 3R_29151935_SNP [dm6]	A	T	1.313e^-4	0.837	UPSTREAM ligatin DOWNSTREAM Slbp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9075178	2R_9075178_SNP [dm3] 2R_13187673_SNP [dm6]	A	T	1.331e^-4	0.837	SYNONYMOUS_CODING Kdm4B UTR_5_PRIME CG17724 INTRON seq & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10205321	3R_10205321_DEL [dm3] 3R_14379599_DEL [dm6]	CGAC	C	1.335e^-4	0.837	INTERGENIC
2R	14220498	2R_14220498_SNP [dm3] 2R_18332993_SNP [dm6]	C	G	1.338e^-4	0.837	INTRON sbb
2R	17528325	2R_17528325_SNP [dm3] 2R_21640820_SNP [dm6]	A	G	1.343e^-4	0.837	INTERGENIC
3R	24110177	3R_24110177_SNP [dm3] 3R_28284455_SNP [dm6]	A	T	1.349e^-4	0.837	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	25537767	3R_25537767_SNP [dm3] 3R_29712045_SNP [dm6]	C	A	1.353e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	13398403	3L_13398403_SNP [dm3] 3L_13405303_SNP [dm6]	C	A	1.356e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad
2L	19950279	2L_19950279_SNP [dm3] 2L_19950279_SNP [dm6]	G	A	1.357e^-4	0.837	INTRON sick	TF binding site mE1_TFBS_HSA
3L	4630378	3L_4630378_SNP [dm3] 3L_4630378_SNP [dm6]	A	G	1.364e^-4	0.837	DOWNSTREAM Rpd3 INTRON axo
X	7638809	X_7638809_SNP [dm3] X_7744776_SNP [dm6]	A	C	1.376e^-4	0.837	INTERGENIC
2R	8115906	2R_8115906_INS [dm3] 2R_12228401_INS [dm6]	G	GTAT	1.378e^-4	0.837	INTRON CG8854
2R	4496746	2R_4496746_SNP [dm3] 2R_8609241_SNP [dm6]	C	T	1.381e^-4	0.837	SYNONYMOUS_CODING rgr	TF binding site mE1_TFBS_cad
3L	16225009	3L_16225009_SNP [dm3] 3L_16231909_SNP [dm6]	T	G	1.384e^-4	0.837	UTR_5_PRIME PDCD-5 UPSTREAM MED10 DOWNSTREAM CG5027	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
2L	4414436	2L_4414436_INS [dm3] 2L_4414436_INS [dm6]	A	ATGTGGCGCTTA...	1.393e^-4	0.837	INTRON CG15431
X	20535061	X_20535061_SNP [dm3] X_20664034_SNP [dm6]	G	C	1.397e^-4	0.837	INTRON CG1835	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr
2R	9595301	2R_9595301_SNP [dm3] 2R_13707796_SNP [dm6]	A	T	1.397e^-4	0.837	INTRON fas
3R	26652968	3R_26652968_SNP [dm3] 3R_30827246_SNP [dm6]	T	A	1.403e^-4	0.837	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
3L	18062512	3L_18062512_SNP [dm3] 3L_18069412_SNP [dm6]	G	A	1.418e^-4	0.837	NON_SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2R	8115891	2R_8115891_INS [dm3] 2R_12228386_INS [dm6]	A	ACAAAC	1.426e^-4	0.837	INTRON CG8854
2R	7937772	2R_7937772_SNP [dm3] 2R_12050267_SNP [dm6]	C	T	1.427e^-4	0.837	DOWNSTREAM CG30039 & 1 other INTERGENIC
2R	11564079	2R_11564079_SNP [dm3] 2R_15676574_SNP [dm6]	T	A	1.430e^-4	0.837	UTR_5_PRIME fus UPSTREAM fus DOWNSTREAM CG8207 INTRON CR45143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	13411706	3L_13411706_SNP [dm3] 3L_13418606_SNP [dm6]	C	T	1.440e^-4	0.837	SYNONYMOUS_CODING CG32121	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1848407	3L_1848407_SNP [dm3] 3L_1848407_SNP [dm6]	T	C	1.443e^-4	0.837	INTERGENIC
2R	11566621	2R_11566621_SNP [dm3] 2R_15679116_SNP [dm6]	G	T	1.450e^-4	0.837	UPSTREAM CG8207 DOWNSTREAM Vha14-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	13695313	3L_13695313_SNP [dm3] 3L_13702213_SNP [dm6]	T	C	1.455e^-4	0.837	INTRON bru-3
2R	11566658	2R_11566658_SNP [dm3] 2R_15679153_SNP [dm6]	T	A	1.457e^-4	0.837	UPSTREAM CG8207 DOWNSTREAM Vha14-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8123050	2R_8123050_SNP [dm3] 2R_12235545_SNP [dm6]	T	C	1.458e^-4	0.837	UPSTREAM CR44313 INTERGENIC
2R	8115873	2R_8115873_SNP [dm3] 2R_12228368_SNP [dm6]	A	T	1.458e^-4	0.837	INTRON CG8854
2R	10319360	2R_10319360_INS [dm3] 2R_14431855_INS [dm6]	C	CACACCCC	1.465e^-4	0.837	INTRON phyl	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13295426	2R_13295426_DEL [dm3] 2R_17407921_DEL [dm6]	TTTGTTTTCCATCTCAATCT...	T	1.470e^-4	0.837	UPSTREAM CG6568 DOWNSTREAM CG30101 INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	1141455	2L_1141455_SNP [dm3] 2L_1141455_SNP [dm6]	C	G	1.470e^-4	0.837	DOWNSTREAM CG4577 INTERGENIC
X	11673360	X_11673360_SNP [dm3] X_11779327_SNP [dm6]	G	A	1.475e^-4	0.837	UPSTREAM dy INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	12800944	X_12800944_SNP [dm3] X_12906911_SNP [dm6]	G	A	1.486e^-4	0.837	UPSTREAM CG4404 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Ubx
3L	16245801	3L_16245801_SNP [dm3] 3L_16252701_SNP [dm6]	T	C	1.500e^-4	0.837	UPSTREAM CG13055 INTERGENIC
2R	8119558	2R_8119558_SNP [dm3] 2R_12232053_SNP [dm6]	A	T	1.500e^-4	0.837	INTERGENIC
2R	8118029	2R_8118029_SNP [dm3] 2R_12230524_SNP [dm6]	G	T	1.502e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	24110027	3R_24110027_SNP [dm3] 3R_28284305_SNP [dm6]	C	A	1.503e^-4	0.837	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	6385208	3R_6385208_SNP [dm3] 3R_10559486_SNP [dm6]	T	G	1.508e^-4	0.837	INTRON hth
2R	11566666	2R_11566666_DEL [dm3] 2R_15679161_DEL [dm6]	GCATACTGTTAATCAAGTTT...	G	1.510e^-4	0.837	UPSTREAM CG8207 DOWNSTREAM Vha14-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1122988	2L_1122988_DEL [dm3] 2L_1122988_DEL [dm6]	AA	A	1.512e^-4	0.837	INTRON Pino
X	1080882	X_1080882_SNP [dm3] X_1186849_SNP [dm6]	C	T	1.517e^-4	0.837	NON_SYNONYMOUS_CODING CG14626	TF binding site mE1_TFBS_chinmo
X	2586215	X_2586215_SNP [dm3] X_2692182_SNP [dm6]	T	A	1.521e^-4	0.837	DOWNSTREAM CG2650 INTRON per	TF binding site mE1_TFBS_chinmo
2L	10546602	2L_10546602_SNP [dm3] 2L_10546602_SNP [dm6]	A	T	1.522e^-4	0.837	INTRON Trim9
3L	18104316	3L_18104316_SNP [dm3] 3L_18111216_SNP [dm6]	T	C	1.529e^-4	0.837	NON_SYNONYMOUS_CODING mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2L	15003702	2L_15003702_SNP [dm3] 2L_15003702_SNP [dm6]	T	C	1.539e^-4	0.837	INTERGENIC
2R	10912555	2R_10912555_SNP [dm3] 2R_15025050_SNP [dm6]	T	C	1.539e^-4	0.837	UPSTREAM CR45256 & 1 other INTRON hbs	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	19381104	3L_19381104_SNP [dm3] 3L_19388004_SNP [dm6]	A	G	1.542e^-4	0.837	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206
2L	1122986	2L_1122986_SNP [dm3] 2L_1122986_SNP [dm6]	T	C	1.543e^-4	0.837	INTRON Pino
2L	5088392	2L_5088392_SNP [dm3] 2L_5088392_SNP [dm6]	T	C	1.546e^-4	0.837	INTRON pgant5
3L	10173293	3L_10173293_SNP [dm3] 3L_10180193_SNP [dm6]	G	A	1.553e^-4	0.837	INTRON dpr10
3R	20101531	3R_20101531_DEL [dm3] 3R_24275809_DEL [dm6]	GCTCTTGGG	G	1.554e^-4	0.837	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	8124650	2R_8124650_SNP [dm3] 2R_12237145_SNP [dm6]	G	A	1.556e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	8511995	2R_8511995_SNP [dm3] 2R_12624490_SNP [dm6]	T	A	1.557e^-4	0.837	SPLICE_SITE_REGION CG30054 SYNONYMOUS_CODING CG30054
3L	5496176	3L_5496176_SNP [dm3] 3L_5503076_SNP [dm6]	C	A	1.567e^-4	0.837	DOWNSTREAM CG34342 INTERGENIC
3L	13398295	3L_13398295_SNP [dm3] 3L_13405195_SNP [dm6]	T	C	1.575e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad
2R	8116990	2R_8116990_SNP [dm3] 2R_12229485_SNP [dm6]	C	T	1.580e^-4	0.837	UPSTREAM CG8854 INTERGENIC
3L	11950647	3L_11950647_SNP [dm3] 3L_11957547_SNP [dm6]	A	G	1.583e^-4	0.837	UPSTREAM CG43294 DOWNSTREAM CG7248 INTRON CG11570
3L	21992953	3L_21992953_SNP [dm3] 3L_21999853_SNP [dm6]	G	A	1.586e^-4	0.837	INTERGENIC
3L	18105610	3L_18105610_SNP [dm3] 3L_18112510_SNP [dm6]	C	T	1.588e^-4	0.837	NON_SYNONYMOUS_CODING mus304 UPSTREAM CG7341 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	12859043	3L_12859043_SNP [dm3] 3L_12865943_SNP [dm6]	A	G	1.592e^-4	0.837	INTERGENIC
2R	8111087	2R_8111087_SNP [dm3] 2R_12223582_SNP [dm6]	C	T	1.599e^-4	0.837	DOWNSTREAM CG8854 INTERGENIC
2R	18562038	2R_18562038_SNP [dm3] 2R_22674533_SNP [dm6]	G	A	1.602e^-4	0.837	UPSTREAM CR44761 INTERGENIC
2R	8117984	2R_8117984_SNP [dm3] 2R_12230479_SNP [dm6]	A	C	1.603e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8120266	2R_8120266_DEL [dm3] 2R_12232761_DEL [dm6]	TT	T	1.604e^-4	0.837	INTERGENIC
2L	7302871	2L_7302871_SNP [dm3] 2L_7302871_SNP [dm6]	A	T	1.610e^-4	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	6681982	X_6681982_SNP [dm3] X_6787949_SNP [dm6]	T	G	1.614e^-4	0.837	SYNONYMOUS_CODING C3G	TF binding site mE1_TFBS_chinmo
3L	18104971	3L_18104971_SNP [dm3] 3L_18111871_SNP [dm6]	C	T	1.619e^-4	0.837	SYNONYMOUS_CODING mus304
2R	11873745	2R_11873745_SNP [dm3] 2R_15986240_SNP [dm6]	C	A	1.621e^-4	0.837	INTRON Strn-Mlck
3L	15988976	3L_15988976_SNP [dm3] 3L_15995876_SNP [dm6]	T	A	1.627e^-4	0.837	INTRON CG5830
X	2490169	X_2490169_SNP [dm3] X_2596136_SNP [dm6]	T	C	1.631e^-4	0.837	UTR_5_PRIME egh	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
3R	25207586	3R_25207586_SNP [dm3] 3R_29381864_SNP [dm6]	A	G	1.631e^-4	0.837	INTRON Ptp99A
2L	15927420	2L_15927420_SNP [dm3] 2L_15927420_SNP [dm6]	C	T	1.632e^-4	0.837	INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	8115093	3R_8115093_SNP [dm3] 3R_12289371_SNP [dm6]	G	T	1.638e^-4	0.837	INTRON svp	TF binding site mE1_TFBS_GATAe mE1_TFBS_hkb mE1_TFBS_HSA
2L	18340149	2L_18340149_SNP [dm3] 2L_18340149_SNP [dm6]	T	C	1.642e^-4	0.837	INTRON Fas3
3L	11977801	3L_11977801_DEL [dm3] 3L_11984701_DEL [dm6]	TACCACCGT	T	1.645e^-4	0.837	UPSTREAM CG6938 DOWNSTREAM CG43896 INTERGENIC
3R	26652971	3R_26652971_SNP [dm3] 3R_30827249_SNP [dm6]	G	T	1.646e^-4	0.837	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
2R	8113423	2R_8113423_SNP [dm3] 2R_12225918_SNP [dm6]	A	C	1.647e^-4	0.837	SYNONYMOUS_CODING CG8854	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	18104011	3L_18104011_SNP [dm3] 3L_18110911_SNP [dm6]	G	T	1.654e^-4	0.837	NON_SYNONYMOUS_CODING mus304	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	2489705	X_2489705_DEL [dm3] X_2595672_DEL [dm6]	TT	T	1.658e^-4	0.837	INTRON egh
2R	8115875	2R_8115875_SNP [dm3] 2R_12228370_SNP [dm6]	A	G	1.661e^-4	0.837	INTRON CG8854
3L	15558488	3L_15558488_DEL [dm3] 3L_15565388_DEL [dm6]	GAAATCT	G	1.665e^-4	0.837	UTR_3_PRIME CG7427 UPSTREAM CG6498 DOWNSTREAM CG7427	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Ubx
X	1034539	X_1034539_SNP [dm3] X_1140506_SNP [dm6]	A	C	1.667e^-4	0.837	INTERGENIC
2R	8116509	2R_8116509_SNP [dm3] 2R_12229004_SNP [dm6]	C	T	1.672e^-4	0.837	INTRON CG8854
2R	14429242	2R_14429242_SNP [dm3] 2R_18541737_SNP [dm6]	C	T	1.680e^-4	0.837	INTRON Rgk2
2L	4483592	2L_4483592_SNP [dm3] 2L_4483592_SNP [dm6]	G	A	1.683e^-4	0.837	INTRON dp	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18061344	3L_18061344_INS [dm3] 3L_18068244_INS [dm6]	A	ATG	1.683e^-4	0.837	DOWNSTREAM CG44006 INTERGENIC
3L	4665507	3L_4665507_SNP [dm3] 3L_4665507_SNP [dm6]	T	C	1.683e^-4	0.837	DOWNSTREAM CG32236 INTRON axo
X	5367789	X_5367789_SNP [dm3] X_5473756_SNP [dm6]	A	G	1.683e^-4	0.837	INTRON SPR
3L	10174785	3L_10174785_SNP [dm3] 3L_10181685_SNP [dm6]	T	A	1.689e^-4	0.837	INTRON dpr10
2R	14883606	2R_14883606_SNP [dm3] 2R_18996101_SNP [dm6]	A	T	1.695e^-4	0.837	INTRON tn
X	7142162	X_7142162_SNP [dm3] X_7248129_SNP [dm6]	G	C	1.697e^-4	0.837	INTRON CR44357
3R	26246771	3R_26246771_SNP [dm3] 3R_30421049_SNP [dm6]	T	A	1.697e^-4	0.837	UTR_5_PRIME CG42740 UTR_3_PRIME CG2217 DOWNSTREAM CG2217 INTRON CG42740 & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	8117941	2R_8117941_SNP [dm3] 2R_12230436_SNP [dm6]	A	C	1.702e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	8123249	2R_8123249_SNP [dm3] 2R_12235744_SNP [dm6]	T	A	1.702e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	15770008	2L_15770008_SNP [dm3] 2L_15770008_SNP [dm6]	G	C	1.707e^-4	0.837	SYNONYMOUS_CODING Ku80
2R	8108547	2R_8108547_SNP [dm3] 2R_12221042_SNP [dm6]	C	A	1.708e^-4	0.837	INTERGENIC
3R	26652704	3R_26652704_SNP [dm3] 3R_30826982_SNP [dm6]	G	C	1.725e^-4	0.837	UTR_3_PRIME cindr UPSTREAM CG15544 DOWNSTREAM cindr
3R	25235126	3R_25235126_INS [dm3] 3R_29409404_INS [dm6]	G	GCAG	1.728e^-4	0.837	INTRON Ptp99A
3L	10909387	3L_10909387_SNP [dm3] 3L_10916287_SNP [dm6]	T	A	1.731e^-4	0.837	INTERGENIC
3R	9234401	3R_9234401_SNP [dm3] 3R_13408679_SNP [dm6]	C	A	1.734e^-4	0.837	DOWNSTREAM yellow-e INTERGENIC
2R	15770004	2R_15770004_SNP [dm3] 2R_19882499_SNP [dm6]	A	T	1.742e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18510458	2R_18510458_SNP [dm3] 2R_22622953_SNP [dm6]	G	C	1.744e^-4	0.837	INTRON CG33143
X	2563852	X_2563852_SNP [dm3] X_2669819_SNP [dm6]	G	A	1.749e^-4	0.837	INTRON sgg
3R	19806039	3R_19806039_SNP [dm3] 3R_23980317_SNP [dm6]	C	T	1.756e^-4	0.837	INTRON CG31140
X	21213438	X_21213438_SNP [dm3] X_21342411_SNP [dm6]	T	C	1.757e^-4	0.837	SYNONYMOUS_CODING fliI	TF binding site mE1_TFBS_cad
3L	5435849	3L_5435849_SNP [dm3] 3L_5442749_SNP [dm6]	G	A	1.763e^-4	0.837	DOWNSTREAM CG34391 INTERGENIC
3L	2711109	3L_2711109_SNP [dm3] 3L_2711109_SNP [dm6]	G	A	1.770e^-4	0.837	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8625413	3L_8625413_SNP [dm3] 3L_8632313_SNP [dm6]	A	C	1.772e^-4	0.837	INTRON Zasp66 & 1 other
X	9290857	X_9290857_SNP [dm3] X_9396824_SNP [dm6]	T	G	1.777e^-4	0.837	INTRON mgl
3R	16422788	3R_16422788_DEL [dm3] 3R_20597066_DEL [dm6]	TAT	T	1.777e^-4	0.837	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8542574	2R_8542574_SNP [dm3] 2R_12655069_SNP [dm6]	T	C	1.779e^-4	0.837	SYNONYMOUS_CODING ZnT49B UPSTREAM CG8646
2L	1623758	2L_1623758_SNP [dm3] 2L_1623758_SNP [dm6]	G	A	1.790e^-4	0.837	UPSTREAM CR44603 EXON CR44603
X	2563811	X_2563811_DEL [dm3] X_2669778_DEL [dm6]	TTTAG	T	1.795e^-4	0.837	INTRON sgg
2L	1623889	2L_1623889_SNP [dm3] 2L_1623889_SNP [dm6]	T	C	1.796e^-4	0.837	UPSTREAM CR44603 EXON CR44603
3R	26274796	3R_26274796_SNP [dm3] 3R_30449074_SNP [dm6]	G	A	1.799e^-4	0.837	SYNONYMOUS_CODING aralar1	TF binding site mE1_TFBS_chinmo
2R	8115894	2R_8115894_INS [dm3] 2R_12228389_INS [dm6]	A	ATTCA	1.804e^-4	0.837	INTRON CG8854
2L	662756	2L_662756_SNP [dm3] 2L_662756_SNP [dm6]	A	C	1.816e^-4	0.837	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	6442660	X_6442660_INS [dm3] X_6548627_INS [dm6]	C	CGATTCTT	1.817e^-4	0.837	INTRON CG34417
2R	11664662	2R_11664662_SNP [dm3] 2R_15777157_SNP [dm6]	C	G	1.820e^-4	0.837	INTRON Zasp52
X	5066341	X_5066341_DEL [dm3] X_5172308_DEL [dm6]	TCCCTCT	T	1.822e^-4	0.837	INTRON rg & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16427784	3R_16427784_INS [dm3] 3R_20602062_INS [dm6]	A	AG	1.826e^-4	0.837	INTRON bon	transposable element FlyBase
X	1084251	X_1084251_SNP [dm3] X_1190218_SNP [dm6]	G	A	1.827e^-4	0.837	INTERGENIC
2R	8117910	2R_8117910_SNP [dm3] 2R_12230405_SNP [dm6]	C	G	1.827e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
2R	13335472	2R_13335472_SNP [dm3] 2R_17447967_SNP [dm6]	G	A	1.835e^-4	0.837	UPSTREAM mthl4 DOWNSTREAM mthl3 INTERGENIC
2R	8115222	2R_8115222_SNP [dm3] 2R_12227717_SNP [dm6]	T	C	1.836e^-4	0.837	UPSTREAM CG8854 INTRON CG8854
2R	8118515	2R_8118515_INS [dm3] 2R_12231010_INS [dm6]	G	GTG	1.844e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	25096510	3R_25096510_SNP [dm3] 3R_29270788_SNP [dm6]	A	C	1.847e^-4	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_sens
3R	25888471	3R_25888471_SNP [dm3] 3R_30062749_SNP [dm6]	G	A	1.850e^-4	0.837	UPSTREAM sima INTRON sima
2L	3306973	2L_3306973_SNP [dm3] 2L_3306973_SNP [dm6]	A	G	1.859e^-4	0.837	INTRON CG3277
3L	9069423	3L_9069423_SNP [dm3] 3L_9076323_SNP [dm6]	T	A	1.865e^-4	0.837	SYNONYMOUS_CODING Tequila INTRON Tequila
2R	8875798	2R_8875798_SNP [dm3] 2R_12988293_SNP [dm6]	C	T	1.867e^-4	0.837	INTERGENIC
2R	8119580	2R_8119580_SNP [dm3] 2R_12232075_SNP [dm6]	A	T	1.871e^-4	0.837	INTERGENIC
2R	17265383	2R_17265383_SNP [dm3] 2R_21377878_SNP [dm6]	T	C	1.873e^-4	0.837	INTRON cv-2
2R	8118720	2R_8118720_SNP [dm3] 2R_12231215_SNP [dm6]	G	A	1.874e^-4	0.837	INTERGENIC
3R	25331458	3R_25331458_SNP [dm3] 3R_29505736_SNP [dm6]	C	T	1.879e^-4	0.837	INTERGENIC
3L	13182573	3L_13182573_SNP [dm3] 3L_13189473_SNP [dm6]	A	T	1.886e^-4	0.837	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8115905	2R_8115905_SNP [dm3] 2R_12228400_SNP [dm6]	A	T	1.887e^-4	0.837	INTRON CG8854
X	13562560	X_13562560_SNP [dm3] X_13668527_SNP [dm6]	A	G	1.891e^-4	0.837	NON_SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl
2R	8053610	2R_8053610_SNP [dm3] 2R_12166105_SNP [dm6]	G	A	1.893e^-4	0.837	UPSTREAM CG34232 DOWNSTREAM Oda INTERGENIC
3L	21999552	3L_21999552_SNP [dm3] 3L_22006452_SNP [dm6]	G	A	1.897e^-4	0.837	INTERGENIC
3R	13902308	3R_13902308_SNP [dm3] 3R_18076586_SNP [dm6]	G	C	1.900e^-4	0.837	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	25360329	3R_25360329_SNP [dm3] 3R_29534607_SNP [dm6]	G	T	1.910e^-4	0.837	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8109832	2R_8109832_SNP [dm3] 2R_12222327_SNP [dm6]	A	T	1.913e^-4	0.837	INTERGENIC
3L	16231997	3L_16231997_SNP [dm3] 3L_16238897_SNP [dm6]	C	T	1.918e^-4	0.837	SYNONYMOUS_CODING l_3_72Dr	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	11564110	2R_11564110_SNP [dm3] 2R_15676605_SNP [dm6]	A	G	1.922e^-4	0.837	UTR_5_PRIME fus UPSTREAM fus DOWNSTREAM CG8207 EXON CR45143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	26654252	3R_26654252_SNP [dm3] 3R_30828530_SNP [dm6]	A	G	1.923e^-4	0.837	INTRON CG15544
X	12963630	X_12963630_SNP [dm3] X_13069597_SNP [dm6]	C	A	1.925e^-4	0.837	INTRON rad
2R	17298217	2R_17298217_SNP [dm3] 2R_21410712_SNP [dm6]	A	T	1.926e^-4	0.837	INTRON Sdc
2R	11714319	2R_11714319_INS [dm3] 2R_15826814_INS [dm6]	T	TTT	1.927e^-4	0.837	UTR_3_PRIME Poxn INTRON tun
3R	22244968	3R_22244968_SNP [dm3] 3R_26419246_SNP [dm6]	A	T	1.928e^-4	0.837	INTERGENIC
2R	11561719	2R_11561719_SNP [dm3] 2R_15674214_SNP [dm6]	G	T	1.928e^-4	0.837	INTRON fus	TF binding site BDTNP1_TFBS_dl
3R	18262749	3R_18262749_DEL [dm3] 3R_22437027_DEL [dm6]	TT	T	1.929e^-4	0.837	UPSTREAM CG13847 INTERGENIC
3L	10196152	3L_10196152_SNP [dm3] 3L_10203052_SNP [dm6]	G	A	1.930e^-4	0.837	INTERGENIC
3R	25078144	3R_25078144_SNP [dm3] 3R_29252422_SNP [dm6]	C	T	1.932e^-4	0.837	UTR_3_PRIME stg	regulatory region REDfly_CRMs
3R	20203509	3R_20203509_DEL [dm3] 3R_24377787_DEL [dm6]	TT	T	1.938e^-4	0.837	DOWNSTREAM CG33342 INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	13499763	2R_13499763_SNP [dm3] 2R_17612258_SNP [dm6]	C	A	1.947e^-4	0.837	INTRON CG10936
X	21457800	X_21457800_SNP [dm3] X_21586773_SNP [dm6]	C	T	1.958e^-4	0.837	INTERGENIC
X	8109335	X_8109335_SNP [dm3] X_8215302_SNP [dm6]	A	G	1.961e^-4	0.837	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
X	9955923	X_9955923_SNP [dm3] X_10061890_SNP [dm6]	A	G	1.962e^-4	0.837	SYNONYMOUS_CODING Gr9a INTRON CG15312
2L	7303154	2L_7303154_SNP [dm3] 2L_7303154_SNP [dm6]	A	G	1.965e^-4	0.837	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	8073044	3L_8073044_SNP [dm3] 3L_8079944_SNP [dm6]	C	T	1.969e^-4	0.837	INTRON Ect4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	12701330	3L_12701330_SNP [dm3] 3L_12708230_SNP [dm6]	C	T	1.971e^-4	0.837	SYNONYMOUS_CODING mirr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	9403883	2R_9403883_SNP [dm3] 2R_13516378_SNP [dm6]	A	T	1.972e^-4	0.837	SYNONYMOUS_CODING CG13330 UTR_3_PRIME Vmat	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	2313984	3R_2313984_SNP [dm3] 3R_6488262_SNP [dm6]	A	T	1.981e^-4	0.838	INTRON CG15186
3L	18090940	3L_18090940_DEL [dm3] 3L_18097840_DEL [dm6]	CTCCT	C	1.983e^-4	0.838	INTRON CG13698
2L	18341131	2L_18341131_DEL [dm3] 2L_18341131_DEL [dm6]	CGTATTCC	C	1.988e^-4	0.838	INTRON Fas3	TF binding site mE1_TFBS_chinmo
X	2212076	X_2212076_SNP [dm3] X_2318043_SNP [dm6]	A	G	2.004e^-4	0.841	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	1084736	X_1084736_SNP [dm3] X_1190703_SNP [dm6]	G	A	2.008e^-4	0.841	UPSTREAM CG11380 INTERGENIC
3L	9515023	3L_9515023_SNP [dm3] 3L_9521923_SNP [dm6]	T	A	2.008e^-4	0.841	INTRON CG33700
3L	20530673	3L_20530673_SNP [dm3] 3L_20537573_SNP [dm6]	C	G	2.024e^-4	0.841	INTRON Rcd2
3L	13182559	3L_13182559_SNP [dm3] 3L_13189459_SNP [dm6]	C	G	2.035e^-4	0.841	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	2720331	2R_2720331_SNP [dm3] 2R_6832826_SNP [dm6]	A	T	2.035e^-4	0.841	SYNONYMOUS_CODING CG15236
X	1076731	X_1076731_SNP [dm3] X_1182698_SNP [dm6]	C	T	2.035e^-4	0.841	SYNONYMOUS_CODING CG14627	TF binding site mE1_TFBS_chinmo
X	8867802	X_8867802_SNP [dm3] X_8973769_SNP [dm6]	T	C	2.036e^-4	0.841	SYNONYMOUS_CODING CG10962 INTRON rdgA & 1 other
2R	8535192	2R_8535192_SNP [dm3] 2R_12647687_SNP [dm6]	C	A	2.038e^-4	0.841	INTRON CG8785
3L	10609494	3L_10609494_SNP [dm3] 3L_10616394_SNP [dm6]	C	G	2.039e^-4	0.841	INTERGENIC
3R	16427783	3R_16427783_SNP [dm3] 3R_20602061_SNP [dm6]	A	G	2.054e^-4	0.841	INTRON bon	transposable element FlyBase
3R	22790453	3R_22790453_SNP [dm3] 3R_26964731_SNP [dm6]	T	G	2.060e^-4	0.841	UTR_5_PRIME Tsp97E DOWNSTREAM Gr97a	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_h mE1_TFBS_HSA
X	10823675	X_10823675_SNP [dm3] X_10929642_SNP [dm6]	T	C	2.060e^-4	0.841	UTR_3_PRIME CG2145	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	7977426	3R_7977426_SNP [dm3] 3R_12151704_SNP [dm6]	G	A	2.069e^-4	0.841	INTRON dpr15
2R	18021117	2R_18021117_SNP [dm3] 2R_22133612_SNP [dm6]	T	C	2.081e^-4	0.841	INTERGENIC
2L	5180416	2L_5180416_SNP [dm3] 2L_5180416_SNP [dm6]	A	G	2.086e^-4	0.841	NON_SYNONYMOUS_CODING Msp300 INTRON Msp300
2R	8121304	2R_8121304_INS [dm3] 2R_12233799_INS [dm6]	A	AA	2.087e^-4	0.841	DOWNSTREAM CR44313 INTERGENIC
3L	15861955	3L_15861955_SNP [dm3] 3L_15868855_SNP [dm6]	T	G	2.100e^-4	0.841	INTRON pHCl
3R	17199930	3R_17199930_SNP [dm3] 3R_21374208_SNP [dm6]	A	G	2.100e^-4	0.841	INTRON mod_mdg4_	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
X	1075197	X_1075197_SNP [dm3] X_1181164_SNP [dm6]	T	C	2.104e^-4	0.841	UTR_3_PRIME CG11379 UPSTREAM CG14627 DOWNSTREAM CG11379	TF binding site mE1_TFBS_chinmo
3L	16223019	3L_16223019_SNP [dm3] 3L_16229919_SNP [dm6]	C	T	2.108e^-4	0.841	SYNONYMOUS_CODING CG5027	TF binding site mE1_TFBS_sens
2R	11873804	2R_11873804_SNP [dm3] 2R_15986299_SNP [dm6]	T	C	2.114e^-4	0.841	INTRON Strn-Mlck
3R	5406621	3R_5406621_DEL [dm3] 3R_9580899_DEL [dm6]	GAATATAATAG...	CCCCACACAT	2.117e^-4	0.841	UTR_3_PRIME CG8273 UPSTREAM CG8301
3L	10486489	3L_10486489_SNP [dm3] 3L_10493389_SNP [dm6]	G	C	2.125e^-4	0.841	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_inv
3L	10640995	3L_10640995_SNP [dm3] 3L_10647895_SNP [dm6]	C	T	2.127e^-4	0.841	INTRON CG32066
X	9955764	X_9955764_SNP [dm3] X_10061731_SNP [dm6]	T	C	2.139e^-4	0.841	SYNONYMOUS_CODING Gr9a INTRON CG15312
X	9955803	X_9955803_SNP [dm3] X_10061770_SNP [dm6]	A	G	2.139e^-4	0.841	SYNONYMOUS_CODING Gr9a INTRON CG15312
X	9955860	X_9955860_SNP [dm3] X_10061827_SNP [dm6]	G	A	2.139e^-4	0.841	SYNONYMOUS_CODING Gr9a INTRON CG15312
3L	12931647	3L_12931647_DEL [dm3] 3L_12938547_DEL [dm6]	TCAGGATTTC	T	2.141e^-4	0.841	INTERGENIC
3R	18987483	3R_18987483_SNP [dm3] 3R_23161761_SNP [dm6]	C	A	2.158e^-4	0.841	UPSTREAM CG13829 INTERGENIC
3L	18112997	3L_18112997_SNP [dm3] 3L_18119897_SNP [dm6]	C	A	2.168e^-4	0.841	SYNONYMOUS_CODING CG7341 DOWNSTREAM CG32195	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	22897956	3R_22897956_SNP [dm3] 3R_27072234_SNP [dm6]	A	G	2.171e^-4	0.841	INTERGENIC
3L	5229400	3L_5229400_SNP [dm3] 3L_5236300_SNP [dm6]	A	T	2.173e^-4	0.841	SYNONYMOUS_CODING CG4669 INTRON shep
3L	2711077	3L_2711077_SNP [dm3] 3L_2711077_SNP [dm6]	A	T	2.175e^-4	0.841	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8415682	X_8415682_SNP [dm3] X_8521649_SNP [dm6]	G	A	2.188e^-4	0.841	INTRON Nrg
X	1424185	X_1424185_SNP [dm3] X_1530152_SNP [dm6]	G	T	2.193e^-4	0.841	INTRON Mur2B	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8262387	3L_8262387_SNP [dm3] 3L_8269287_SNP [dm6]	A	T	2.193e^-4	0.841	INTRON Dscam4
3L	8262549	3L_8262549_SNP [dm3] 3L_8269449_SNP [dm6]	G	C	2.194e^-4	0.841	INTRON Dscam4
3L	16197452	3L_16197452_SNP [dm3] 3L_16204352_SNP [dm6]	T	G	2.195e^-4	0.841	INTERGENIC
3L	19425202	3L_19425202_SNP [dm3] 3L_19432102_SNP [dm6]	A	T	2.204e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	8117205	2R_8117205_SNP [dm3] 2R_12229700_SNP [dm6]	A	G	2.212e^-4	0.841	UPSTREAM CG8854 INTERGENIC
2R	13160014	2R_13160014_SNP [dm3] 2R_17272509_SNP [dm6]	G	C	2.214e^-4	0.841	INTRON mbl
2R	12831545	2R_12831545_SNP [dm3] 2R_16944040_SNP [dm6]	A	T	2.218e^-4	0.841	UTR_3_PRIME Pkc53E DOWNSTREAM Pkc53E
3L	10608898	3L_10608898_SNP [dm3] 3L_10615798_SNP [dm6]	G	A	2.218e^-4	0.841	INTERGENIC
3R	890191	3R_890191_SNP [dm3] 3R_5064469_SNP [dm6]	G	T	2.219e^-4	0.841	INTERGENIC	TF binding site mE1_TFBS_cad
3L	17012357	3L_17012357_SNP [dm3] 3L_17019257_SNP [dm6]	C	T	2.222e^-4	0.841	SYNONYMOUS_CODING CG7728	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15927274	2L_15927274_SNP [dm3] 2L_15927274_SNP [dm6]	A	G	2.243e^-4	0.841	DOWNSTREAM CG4793 INTRON beat-Ib	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	16422726	3R_16422726_SNP [dm3] 3R_20597004_SNP [dm6]	T	C	2.251e^-4	0.841	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
3R	19167396	3R_19167396_SNP [dm3] 3R_23341674_SNP [dm6]	T	C	2.251e^-4	0.841	INTRON pnt	TF binding site BDTNP1_TFBS_dl
3R	18753175	3R_18753175_SNP [dm3] 3R_22927453_SNP [dm6]	A	C	2.259e^-4	0.841	INTRON klg
2R	8122011	2R_8122011_SNP [dm3] 2R_12234506_SNP [dm6]	C	T	2.260e^-4	0.841	EXON CR44313	TF binding site mE1_TFBS_kn
3R	16577992	3R_16577992_SNP [dm3] 3R_20752270_SNP [dm6]	T	A	2.262e^-4	0.841	INTRON CG42322
3L	18856077	3L_18856077_SNP [dm3] 3L_18862977_SNP [dm6]	T	C	2.265e^-4	0.841	UPSTREAM CG6865 INTERGENIC
3L	6158881	3L_6158881_SNP [dm3] 3L_6165781_SNP [dm6]	A	C	2.266e^-4	0.841	UTR_3_PRIME CG10289
3L	14237210	3L_14237210_SNP [dm3] 3L_14244110_SNP [dm6]	T	C	2.267e^-4	0.841	DOWNSTREAM CR44561 INTERGENIC
X	5099095	X_5099095_SNP [dm3] X_5205062_SNP [dm6]	C	T	2.268e^-4	0.841	INTRON CG15465 & 1 other
2R	7839041	2R_7839041_SNP [dm3] 2R_11951536_SNP [dm6]	C	T	2.274e^-4	0.841	INTRON CG13188
3L	19381974	3L_19381974_SNP [dm3] 3L_19388874_SNP [dm6]	A	T	2.280e^-4	0.841	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9290805	X_9290805_SNP [dm3] X_9396772_SNP [dm6]	T	C	2.283e^-4	0.841	INTRON mgl
3R	4712940	3R_4712940_SNP [dm3] 3R_8887218_SNP [dm6]	C	T	2.283e^-4	0.841	INTRON pyd
3L	19382014	3L_19382014_SNP [dm3] 3L_19388914_SNP [dm6]	G	A	2.283e^-4	0.841	SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9731456	2R_9731456_SNP [dm3] 2R_13843951_SNP [dm6]	A	G	2.285e^-4	0.841	INTRON Syngr
3R	20101732	3R_20101732_SNP [dm3] 3R_24276010_SNP [dm6]	T	G	2.287e^-4	0.841	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	6879536	2R_6879536_SNP [dm3] 2R_10992031_SNP [dm6]	T	A	2.301e^-4	0.841	INTRON luna	TF binding site mE1_TFBS_chinmo
X	16129101	X_16129101_SNP [dm3] X_16235068_SNP [dm6]	C	G	2.303e^-4	0.841	INTERGENIC
3R	20101911	3R_20101911_SNP [dm3] 3R_24276189_SNP [dm6]	A	T	2.312e^-4	0.841	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	18102358	3L_18102358_SNP [dm3] 3L_18109258_SNP [dm6]	C	A	2.312e^-4	0.841	SYNONYMOUS_CODING CG5147 UPSTREAM mus304	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2R	11566652	2R_11566652_SNP [dm3] 2R_15679147_SNP [dm6]	C	A	2.314e^-4	0.841	UPSTREAM CG8207 DOWNSTREAM Vha14-1 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	8119549	2R_8119549_SNP [dm3] 2R_12232044_SNP [dm6]	G	T	2.317e^-4	0.841	INTERGENIC
2R	8121312	2R_8121312_SNP [dm3] 2R_12233807_SNP [dm6]	A	G	2.320e^-4	0.841	DOWNSTREAM CR44313 INTERGENIC
3R	22926335	3R_22926335_DEL [dm3] 3R_27100613_DEL [dm6]	TT	T	2.320e^-4	0.841	UPSTREAM eater & 1 other INTERGENIC	regulatory region REDfly_CRMs
3R	25769405	3R_25769405_SNP [dm3] 3R_29943683_SNP [dm6]	C	T	2.320e^-4	0.841	SYNONYMOUS_CODING CG15523
2R	8115928	2R_8115928_INS [dm3] 2R_12228423_INS [dm6]	G	GTTAGCATG	2.323e^-4	0.841	INTRON CG8854
X	5449276	X_5449276_SNP [dm3] X_5555243_SNP [dm6]	A	G	2.337e^-4	0.843	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2R	16914272	2R_16914272_SNP [dm3] 2R_21026767_SNP [dm6]	G	T	2.339e^-4	0.843	DOWNSTREAM CG9350 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	5023855	3L_5023855_SNP [dm3] 3L_5023855_SNP [dm6]	T	G	2.346e^-4	0.843	INTRON Con
3R	20102030	3R_20102030_SNP [dm3] 3R_24276308_SNP [dm6]	A	T	2.347e^-4	0.843	UTR_5_PRIME Orct UPSTREAM Orct DOWNSTREAM Orct2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	11227042	3L_11227042_SNP [dm3] 3L_11233942_SNP [dm6]	G	A	2.360e^-4	0.845	INTRON Ir68a
3L	1988888	3L_1988888_SNP [dm3] 3L_1988888_SNP [dm6]	T	C	2.367e^-4	0.845	INTERGENIC	TF binding site mE1_TFBS_inv
3R	10205257	3R_10205257_SNP [dm3] 3R_14379535_SNP [dm6]	A	G	2.374e^-4	0.845	INTERGENIC
3L	13921324	3L_13921324_SNP [dm3] 3L_13928224_SNP [dm6]	T	A	2.379e^-4	0.845	NON_SYNONYMOUS_CODING CG8833	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	14147065	3R_14147065_SNP [dm3] 3R_18321343_SNP [dm6]	G	A	2.380e^-4	0.845	INTRON CG31235	transposable element FlyBase
3L	9683712	3L_9683712_SNP [dm3] 3L_9690612_SNP [dm6]	C	A	2.380e^-4	0.845	INTRON CG6767
3L	19382194	3L_19382194_SNP [dm3] 3L_19389094_SNP [dm6]	G	A	2.391e^-4	0.845	SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	22790291	3R_22790291_SNP [dm3] 3R_26964569_SNP [dm6]	G	A	2.393e^-4	0.845	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	26231395	3R_26231395_SNP [dm3] 3R_30405673_SNP [dm6]	T	C	2.401e^-4	0.845	DOWNSTREAM CR45570 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	4028181	2L_4028181_SNP [dm3] 2L_4028181_SNP [dm6]	G	A	2.404e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
3R	25360323	3R_25360323_SNP [dm3] 3R_29534601_SNP [dm6]	T	G	2.407e^-4	0.845	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	1069020	X_1069020_SNP [dm3] X_1174987_SNP [dm6]	C	G	2.420e^-4	0.845	NON_SYNONYMOUS_CODING CG11384	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	20105165	3R_20105165_SNP [dm3] 3R_24279443_SNP [dm6]	T	A	2.428e^-4	0.845	UPSTREAM CG13611 DOWNSTREAM Orct INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad transposable element FlyBase
2R	14667034	2R_14667034_SNP [dm3] 2R_18779529_SNP [dm6]	C	T	2.429e^-4	0.845	INTERGENIC
2L	11930175	2L_11930175_SNP [dm3] 2L_11930175_SNP [dm6]	G	T	2.433e^-4	0.845	INTERGENIC
2R	13610632	2R_13610632_SNP [dm3] 2R_17723127_SNP [dm6]	T	C	2.442e^-4	0.845	UTR_3_PRIME CG10934 UPSTREAM CG10933	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_Trl
3L	10909482	3L_10909482_SNP [dm3] 3L_10916382_SNP [dm6]	G	T	2.443e^-4	0.845	INTERGENIC
2R	7839065	2R_7839065_SNP [dm3] 2R_11951560_SNP [dm6]	G	T	2.450e^-4	0.845	INTRON CG13188
2L	19083226	2L_19083226_SNP [dm3] 2L_19083226_SNP [dm6]	A	G	2.451e^-4	0.845	UTR_5_PRIME Lim3 INTRON Lim3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
3R	25115846	3R_25115846_SNP [dm3] 3R_29290124_SNP [dm6]	C	G	2.454e^-4	0.845	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	8003204	3R_8003204_SNP [dm3] 3R_12177482_SNP [dm6]	G	C	2.457e^-4	0.845	INTERGENIC
3L	18062744	3L_18062744_SNP [dm3] 3L_18069644_SNP [dm6]	C	A	2.457e^-4	0.845	NON_SYNONYMOUS_CODING CG44006 DOWNSTREAM CG44005
2R	16516859	2R_16516859_SNP [dm3] 2R_20629354_SNP [dm6]	G	C	2.462e^-4	0.845	SYNONYMOUS_CODING Rcd6	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	7638432	X_7638432_SNP [dm3] X_7744399_SNP [dm6]	A	T	2.463e^-4	0.845	INTERGENIC
3L	16223864	3L_16223864_SNP [dm3] 3L_16230764_SNP [dm6]	A	C	2.463e^-4	0.845	NON_SYNONYMOUS_CODING CG5027 DOWNSTREAM PDCD-5	TF binding site mE1_TFBS_sens
3R	26653896	3R_26653896_SNP [dm3] 3R_30828174_SNP [dm6]	T	A	2.481e^-4	0.849	UTR_5_PRIME CG15544
3R	15650226	3R_15650226_SNP [dm3] 3R_19824504_SNP [dm6]	T	A	2.490e^-4	0.85	INTRON bnl
3L	14469127	3L_14469127_INS [dm3] 3L_14476027_INS [dm6]	T	TA	2.491e^-4	0.85	INTRON bbg
2R	8116113	2R_8116113_SNP [dm3] 2R_12228608_SNP [dm6]	A	G	2.499e^-4	0.851	INTRON CG8854
3L	824587	3L_824587_SNP [dm3] 3L_824587_SNP [dm6]	G	C	2.505e^-4	0.851	INTERGENIC
3L	8262625	3L_8262625_SNP [dm3] 3L_8269525_SNP [dm6]	G	A	2.523e^-4	0.853	INTRON Dscam4
X	1080878	X_1080878_SNP [dm3] X_1186845_SNP [dm6]	A	T	2.530e^-4	0.853	SYNONYMOUS_CODING CG14626	TF binding site mE1_TFBS_chinmo
2R	13609586	2R_13609586_DEL [dm3] 2R_17722081_DEL [dm6]	GCAAGTGACGC...	A	2.532e^-4	0.853	UPSTREAM CG10934 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	11463922	2L_11463922_SNP [dm3] 2L_11463922_SNP [dm6]	T	G	2.537e^-4	0.853	INTERGENIC	TF binding site mE1_TFBS_cad
3R	16422783	3R_16422783_SNP [dm3] 3R_20597061_SNP [dm6]	T	A	2.540e^-4	0.853	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
2R	12719514	2R_12719514_SNP [dm3] 2R_16832009_SNP [dm6]	C	T	2.544e^-4	0.853	DOWNSTREAM mir-8 EXON CR43650	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	15977057	3R_15977057_SNP [dm3] 3R_20151335_SNP [dm6]	C	G	2.546e^-4	0.853	INTERGENIC
2L	15778418	2L_15778418_SNP [dm3] 2L_15778418_SNP [dm6]	G	C	2.548e^-4	0.853	INTERGENIC
3L	2523583	3L_2523583_SNP [dm3] 3L_2523583_SNP [dm6]	G	A	2.557e^-4	0.853	INTRON Spn
X	2493261	X_2493261_SNP [dm3] X_2599228_SNP [dm6]	G	T	2.562e^-4	0.853	UTR_3_PRIME Klp3A DOWNSTREAM Klp3A & 1 other
3L	15036109	3L_15036109_SNP [dm3] 3L_15043009_SNP [dm6]	C	T	2.563e^-4	0.853	NON_SYNONYMOUS_CODING ind UPSTREAM Rpn12R INTRON Sytbeta	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad
2R	11566458	2R_11566458_SNP [dm3] 2R_15678953_SNP [dm6]	C	T	2.566e^-4	0.853	UTR_5_PRIME CG8207 DOWNSTREAM Vha14-1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10909756	3L_10909756_SNP [dm3] 3L_10916656_SNP [dm6]	A	G	2.571e^-4	0.853	INTERGENIC
3R	9566214	3R_9566214_SNP [dm3] 3R_13740492_SNP [dm6]	C	A	2.574e^-4	0.853	INTRON CG34383
2R	4495341	2R_4495341_SNP [dm3] 2R_8607836_SNP [dm6]	C	A	2.578e^-4	0.853	INTRON rgr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15861982	3L_15861982_DEL [dm3] 3L_15868882_DEL [dm6]	AAA	A	2.593e^-4	0.855	INTRON pHCl
3R	2538332	3R_2538332_SNP [dm3] 3R_6712610_SNP [dm6]	G	A	2.594e^-4	0.855	INTRON pb	regulatory region REDfly_CRMs
X	13923742	X_13923742_SNP [dm3] X_14029709_SNP [dm6]	A	G	2.635e^-4	0.867	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	8547332	2R_8547332_SNP [dm3] 2R_12659827_SNP [dm6]	C	T	2.648e^-4	0.868	UTR_3_PRIME nemy DOWNSTREAM CG8646
2R	8123170	2R_8123170_SNP [dm3] 2R_12235665_SNP [dm6]	G	A	2.649e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_sna
X	15422773	X_15422773_SNP [dm3] X_15528740_SNP [dm6]	A	G	2.655e^-4	0.868	INTRON Ac13E
2L	14253605	2L_14253605_SNP [dm3] 2L_14253605_SNP [dm6]	A	C	2.655e^-4	0.868	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7303915	2L_7303915_SNP [dm3] 2L_7303915_SNP [dm6]	A	C	2.667e^-4	0.87	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	2304603	3R_2304603_SNP [dm3] 3R_6478881_SNP [dm6]	G	T	2.679e^-4	0.871	UTR_5_PRIME CG15186
X	1064471	X_1064471_DEL [dm3] X_1170438_DEL [dm6]	AAAAA	A	2.690e^-4	0.871	UPSTREAM CG11378 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	18881964	3L_18881964_SNP [dm3] 3L_18888864_SNP [dm6]	G	T	2.694e^-4	0.871	INTRON CG3961
3R	20112949	3R_20112949_SNP [dm3] 3R_24287227_SNP [dm6]	C	T	2.695e^-4	0.871	SPLICE_SITE_REGION CG6356 INTRON CG6356	TF binding site mE1_TFBS_inv
2L	14253610	2L_14253610_SNP [dm3] 2L_14253610_SNP [dm6]	T	A	2.700e^-4	0.871	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	13562596	X_13562596_SNP [dm3] X_13668563_SNP [dm6]	C	T	2.709e^-4	0.871	SYNONYMOUS_CODING CG11164 UPSTREAM Lig4	TF binding site BDTNP1_TFBS_dl
3L	6976561	3L_6976561_SNP [dm3] 3L_6983461_SNP [dm6]	G	C	2.711e^-4	0.871	DOWNSTREAM CG32388 & 1 other INTERGENIC	TF binding site mE1_TFBS_sens
X	1084036	X_1084036_SNP [dm3] X_1190003_SNP [dm6]	C	A	2.714e^-4	0.871	INTERGENIC
2R	12036285	2R_12036285_SNP [dm3] 2R_16148780_SNP [dm6]	T	G	2.715e^-4	0.871	UPSTREAM Ext2 DOWNSTREAM CG10731 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_ttk mE1_TFBS_Ubx
3L	9511646	3L_9511646_SNP [dm3] 3L_9518546_SNP [dm6]	A	G	2.715e^-4	0.871	INTRON CG33700
X	13339223	X_13339223_SNP [dm3] X_13445190_SNP [dm6]	T	A	2.745e^-4	0.879	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2L	8620532	2L_8620532_SNP [dm3] 2L_8620532_SNP [dm6]	C	T	2.757e^-4	0.879	DOWNSTREAM tRNA:CR31602 INTRON Sema-1a
3L	2711078	3L_2711078_SNP [dm3] 3L_2711078_SNP [dm6]	G	A	2.761e^-4	0.879	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	11843137	2R_11843137_SNP [dm3] 2R_15955632_SNP [dm6]	A	T	2.762e^-4	0.879	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8115924	2R_8115924_SNP [dm3] 2R_12228419_SNP [dm6]	G	A	2.777e^-4	0.881	INTRON CG8854
2R	8092028	2R_8092028_SNP [dm3] 2R_12204523_SNP [dm6]	T	G	2.785e^-4	0.881	INTERGENIC
3L	18101619	3L_18101619_SNP [dm3] 3L_18108519_SNP [dm6]	C	T	2.788e^-4	0.881	NON_SYNONYMOUS_CODING CG5147	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	8120487	2R_8120487_SNP [dm3] 2R_12232982_SNP [dm6]	A	T	2.790e^-4	0.881	INTERGENIC
2L	19950277	2L_19950277_SNP [dm3] 2L_19950277_SNP [dm6]	G	T	2.791e^-4	0.881	INTRON sick	TF binding site mE1_TFBS_HSA
3L	6293926	3L_6293926_SNP [dm3] 3L_6300826_SNP [dm6]	T	A	2.795e^-4	0.881	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	26083111	3R_26083111_DEL [dm3] 3R_30257389_DEL [dm6]	AGAAACATA	A	2.819e^-4	0.885	INTERGENIC
2R	8060112	2R_8060112_DEL [dm3] 2R_12172607_DEL [dm6]	AA	A	2.821e^-4	0.885	INTRON Oda	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_kn mE1_TFBS_Kr mE1_TFBS_Trl mE1_TFBS_zfh1
3R	27447685	3R_27447685_SNP [dm3] 3R_31621963_SNP [dm6]	T	A	2.826e^-4	0.885	UTR_3_PRIME pasha UPSTREAM kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	8669485	X_8669485_SNP [dm3] X_8775452_SNP [dm6]	G	A	2.836e^-4	0.885	INTRON Lim1	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	813784	3L_813784_SNP [dm3] 3L_813784_SNP [dm6]	C	G	2.840e^-4	0.885	EXON CR44537	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18001778	3L_18001778_SNP [dm3] 3L_18008678_SNP [dm6]	A	G	2.846e^-4	0.885	INTRON Eip75B
2R	8115744	2R_8115744_SNP [dm3] 2R_12228239_SNP [dm6]	G	A	2.854e^-4	0.885	INTRON CG8854
2R	8545378	2R_8545378_SNP [dm3] 2R_12657873_SNP [dm6]	T	A	2.879e^-4	0.885	SYNONYMOUS_CODING CG8646	TF binding site mE1_TFBS_cad
3R	25537440	3R_25537440_SNP [dm3] 3R_29711718_SNP [dm6]	G	A	2.886e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	22790301	3R_22790301_SNP [dm3] 3R_26964579_SNP [dm6]	C	G	2.887e^-4	0.885	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
3R	22790307	3R_22790307_SNP [dm3] 3R_26964585_SNP [dm6]	C	G	2.892e^-4	0.885	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA
2L	19633135	2L_19633135_SNP [dm3] 2L_19633135_SNP [dm6]	C	G	2.897e^-4	0.885	INTRON Lar
3L	10174784	3L_10174784_SNP [dm3] 3L_10181684_SNP [dm6]	T	A	2.897e^-4	0.885	INTRON dpr10
2R	13609619	2R_13609619_SNP [dm3] 2R_17722114_SNP [dm6]	A	T	2.905e^-4	0.885	UPSTREAM CG10934 INTERGENIC	TF binding site mE1_TFBS_Trl
3R	804830	3R_804830_DEL [dm3] 3R_4979108_DEL [dm6]	TAG	A	2.911e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	26653910	3R_26653910_SNP [dm3] 3R_30828188_SNP [dm6]	A	G	2.915e^-4	0.885	UTR_5_PRIME CG15544
3R	23727957	3R_23727957_SNP [dm3] 3R_27902235_SNP [dm6]	C	A	2.921e^-4	0.885	INTRON CG34353
3R	17197811	3R_17197811_SNP [dm3] 3R_21372089_SNP [dm6]	C	T	2.923e^-4	0.885	DOWNSTREAM mod_mdg4_ INTRON mod_mdg4_
X	18214458	X_18214458_DEL [dm3] X_18320425_DEL [dm6]	ATT	A	2.924e^-4	0.885	INTRON CG6023
2R	7929254	2R_7929254_SNP [dm3] 2R_12041749_SNP [dm6]	A	G	2.944e^-4	0.885	SYNONYMOUS_CODING RpIII128	TF binding site mE1_TFBS_sens
X	1082843	X_1082843_SNP [dm3] X_1188810_SNP [dm6]	T	G	2.944e^-4	0.885	DOWNSTREAM CG14626 INTERGENIC
X	14411959	X_14411959_SNP [dm3] X_14517926_SNP [dm6]	T	G	2.946e^-4	0.885	INTRON CR44110	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	11227601	2R_11227601_SNP [dm3] 2R_15340096_SNP [dm6]	G	T	2.955e^-4	0.885	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_zfh1
2R	8109897	2R_8109897_SNP [dm3] 2R_12222392_SNP [dm6]	G	A	2.957e^-4	0.885	INTERGENIC
3R	17200389	3R_17200389_SNP [dm3] 3R_21374667_SNP [dm6]	C	T	2.958e^-4	0.885	INTRON mod_mdg4_	TF binding site mE1_TFBS_sens
3R	22790256	3R_22790256_SNP [dm3] 3R_26964534_SNP [dm6]	C	T	2.959e^-4	0.885	DOWNSTREAM Gr97a INTRON Tsp97E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	8262586	3L_8262586_SNP [dm3] 3L_8269486_SNP [dm6]	G	A	2.963e^-4	0.885	INTRON Dscam4
X	16420058	X_16420058_SNP [dm3] X_16526025_SNP [dm6]	G	A	2.963e^-4	0.885	UPSTREAM Cnx14D INTRON para	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA mE1_TFBS_Trl
X	6281782	X_6281782_SNP [dm3] X_6387749_SNP [dm6]	C	T	2.975e^-4	0.885	INTERGENIC
2L	4779929	2L_4779929_SNP [dm3] 2L_4779929_SNP [dm6]	A	C	2.979e^-4	0.885	INTRON CG15630
3L	9069400	3L_9069400_SNP [dm3] 3L_9076300_SNP [dm6]	T	C	2.985e^-4	0.885	INTRON Tequila
3L	9069410	3L_9069410_INS [dm3] 3L_9076310_INS [dm6]	T	TAT	2.985e^-4	0.885	SPLICE_SITE_REGION Tequila INTRON Tequila
2R	8113883	2R_8113883_SNP [dm3] 2R_12226378_SNP [dm6]	A	C	2.996e^-4	0.885	START_GAINED CG8854 UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	13283641	3L_13283641_SNP [dm3] 3L_13290541_SNP [dm6]	A	C	2.997e^-4	0.885	DOWNSTREAM CR43912 INTERGENIC
X	5850481	X_5850481_SNP [dm3] X_5956448_SNP [dm6]	C	T	2.997e^-4	0.885	INTRON CG6067
3R	25675433	3R_25675433_SNP [dm3] 3R_29849711_SNP [dm6]	C	T	3.002e^-4	0.885	SYNONYMOUS_CODING Cad99C	TF binding site mE1_TFBS_cad
2R	18565476	2R_18565476_SNP [dm3] 2R_22677971_SNP [dm6]	A	G	3.008e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25005634	3R_25005634_SNP [dm3] 3R_29179912_SNP [dm6]	G	A	3.009e^-4	0.885	INTRON CG14509
2L	19943828	2L_19943828_SNP [dm3] 2L_19943828_SNP [dm6]	T	A	3.010e^-4	0.885	INTRON sick	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
3R	23734073	3R_23734073_SNP [dm3] 3R_27908351_SNP [dm6]	G	C	3.010e^-4	0.885	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6686240	3L_6686240_SNP [dm3] 3L_6693140_SNP [dm6]	G	C	3.021e^-4	0.885	UPSTREAM SP1173 INTRON SP1173
3L	12347073	3L_12347073_DEL [dm3] 3L_12353973_DEL [dm6]	TGATTTTCCGTTTGCTTTCC...	T	3.026e^-4	0.885	INTERGENIC
X	1082530	X_1082530_SNP [dm3] X_1188497_SNP [dm6]	C	T	3.033e^-4	0.885	NON_SYNONYMOUS_CODING CG14626
2R	8113893	2R_8113893_SNP [dm3] 2R_12226388_SNP [dm6]	G	A	3.041e^-4	0.885	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	5470948	2L_5470948_SNP [dm3] 2L_5470948_SNP [dm6]	A	T	3.045e^-4	0.885	INTERGENIC
3L	12030252	3L_12030252_SNP [dm3] 3L_12037152_SNP [dm6]	C	T	3.046e^-4	0.885	INTRON rols
2L	5086481	2L_5086481_SNP [dm3] 2L_5086481_SNP [dm6]	G	A	3.047e^-4	0.885	INTRON pgant5
2L	4846623	2L_4846623_SNP [dm3] 2L_4846623_SNP [dm6]	T	A	3.049e^-4	0.885	UPSTREAM mxt INTRON mxt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19718181	2L_19718181_SNP [dm3] 2L_19718181_SNP [dm6]	A	G	3.050e^-4	0.885	INTRON Lar	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	9069403	3L_9069403_SNP [dm3] 3L_9076303_SNP [dm6]	G	C	3.052e^-4	0.885	INTRON Tequila
3L	5325236	3L_5325236_SNP [dm3] 3L_5332136_SNP [dm6]	C	A	3.061e^-4	0.885	INTERGENIC
X	8617051	X_8617051_SNP [dm3] X_8723018_SNP [dm6]	C	A	3.062e^-4	0.885	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8119529	2R_8119529_SNP [dm3] 2R_12232024_SNP [dm6]	A	T	3.067e^-4	0.885	INTERGENIC
X	13198689	X_13198689_SNP [dm3] X_13304656_SNP [dm6]	G	A	3.069e^-4	0.885	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8124838	2R_8124838_SNP [dm3] 2R_12237333_SNP [dm6]	T	C	3.069e^-4	0.885	INTERGENIC
3L	17564822	3L_17564822_SNP [dm3] 3L_17571722_SNP [dm6]	G	A	3.072e^-4	0.885	INTRON Eip74EF	TF binding site mE1_TFBS_Trl
3L	18020428	3L_18020428_SNP [dm3] 3L_18027328_SNP [dm6]	T	C	3.083e^-4	0.887	INTRON Eip75B
2R	8124836	2R_8124836_SNP [dm3] 2R_12237331_SNP [dm6]	T	A	3.088e^-4	0.887	INTERGENIC
3R	20102075	3R_20102075_SNP [dm3] 3R_24276353_SNP [dm6]	A	G	3.108e^-4	0.891	UTR_5_PRIME Orct UPSTREAM Orct DOWNSTREAM Orct2	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1097760	2L_1097760_SNP [dm3] 2L_1097760_SNP [dm6]	A	G	3.126e^-4	0.892	INTRON CG4629
2R	16144280	2R_16144280_SNP [dm3] 2R_20256775_SNP [dm6]	A	C	3.129e^-4	0.892	SYNONYMOUS_CODING Ate1 UPSTREAM Hsl	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	26653109	3R_26653109_SNP [dm3] 3R_30827387_SNP [dm6]	T	A	3.136e^-4	0.892	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
3L	18067853	3L_18067853_SNP [dm3] 3L_18074753_SNP [dm6]	A	G	3.138e^-4	0.892	UPSTREAM CG44004 EXON CR45391
3L	9542962	3L_9542962_SNP [dm3] 3L_9549862_SNP [dm6]	C	A	3.141e^-4	0.892	INTRON CG42673
3R	20112538	3R_20112538_SNP [dm3] 3R_24286816_SNP [dm6]	C	G	3.147e^-4	0.892	SYNONYMOUS_CODING CG6356	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	2563803	X_2563803_SNP [dm3] X_2669770_SNP [dm6]	A	T	3.148e^-4	0.892	INTRON sgg
2L	15764435	2L_15764435_SNP [dm3] 2L_15764435_SNP [dm6]	C	T	3.162e^-4	0.892	SYNONYMOUS_CODING CG3793	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	1094835	X_1094835_SNP [dm3] X_1200802_SNP [dm6]	C	A	3.167e^-4	0.892	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_sens
3R	15490570	3R_15490570_SNP [dm3] 3R_19664848_SNP [dm6]	C	T	3.178e^-4	0.892	UPSTREAM CG7432 INTERGENIC
3R	26650792	3R_26650792_SNP [dm3] 3R_30825070_SNP [dm6]	A	G	3.183e^-4	0.892	SYNONYMOUS_CODING cindr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1671007	3L_1671007_SNP [dm3] 3L_1671007_SNP [dm6]	A	C	3.184e^-4	0.892	UPSTREAM RabX5 INTRON CG13930	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8113889	2R_8113889_SNP [dm3] 2R_12226384_SNP [dm6]	G	T	3.186e^-4	0.892	UTR_5_PRIME CG8854 INTRON CG8854	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	23715348	3R_23715348_SNP [dm3] 3R_27889626_SNP [dm6]	A	G	3.186e^-4	0.892	INTRON CG34353
3L	16230684	3L_16230684_SNP [dm3] 3L_16237584_SNP [dm6]	A	G	3.186e^-4	0.892	UPSTREAM l_3_72Dr DOWNSTREAM l_3_72Dp INTERGENIC
3R	26653094	3R_26653094_SNP [dm3] 3R_30827372_SNP [dm6]	A	C	3.192e^-4	0.892	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
3R	26653218	3R_26653218_SNP [dm3] 3R_30827496_SNP [dm6]	C	A	3.195e^-4	0.892	UPSTREAM CG15544 DOWNSTREAM cindr INTERGENIC
3L	19381949	3L_19381949_SNP [dm3] 3L_19388849_SNP [dm6]	G	A	3.196e^-4	0.892	NON_SYNONYMOUS_CODING ms_3_76Ba INTRON CG32206	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14053470	3L_14053470_DEL [dm3] 3L_14060370_DEL [dm6]	TT	T	3.209e^-4	0.894	INTRON CG32138
3R	2493921	3R_2493921_SNP [dm3] 3R_6668199_SNP [dm6]	G	A	3.215e^-4	0.895	INTRON lab	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25486835	3R_25486835_SNP [dm3] 3R_29661113_SNP [dm6]	C	G	3.226e^-4	0.896	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	5368063	X_5368063_SNP [dm3] X_5474030_SNP [dm6]	G	T	3.240e^-4	0.899	INTRON SPR
3L	4721797	3L_4721797_SNP [dm3] 3L_4721797_SNP [dm6]	T	C	3.250e^-4	0.9	INTRON RhoGEF64C
3L	15861979	3L_15861979_SNP [dm3] 3L_15868879_SNP [dm6]	T	A	3.253e^-4	0.9	INTRON pHCl
X	1081402	X_1081402_SNP [dm3] X_1187369_SNP [dm6]	G	T	3.268e^-4	0.903	INTRON CG14626	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9426724	2L_9426724_SNP [dm3] 2L_9426724_SNP [dm6]	C	A	3.285e^-4	0.905	UPSTREAM Fbp2 DOWNSTREAM Mco1 INTERGENIC
3L	6800816	3L_6800816_SNP [dm3] 3L_6807716_SNP [dm6]	T	A	3.286e^-4	0.905	INTERGENIC
2L	662747	2L_662747_SNP [dm3] 2L_662747_SNP [dm6]	G	A	3.293e^-4	0.905	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18563306	2R_18563306_SNP [dm3] 2R_22675801_SNP [dm6]	G	T	3.300e^-4	0.905	INTERGENIC	enhancer mE1_CBP_Enhancers TF binding site mE1_TFBS_chinmo
3L	13182540	3L_13182540_SNP [dm3] 3L_13189440_SNP [dm6]	T	C	3.306e^-4	0.905	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21927483	3L_21927483_SNP [dm3] 3L_21934383_SNP [dm6]	T	C	3.310e^-4	0.905	UPSTREAM CG7442 INTERGENIC
3R	4470391	3R_4470391_SNP [dm3] 3R_8644669_SNP [dm6]	C	G	3.315e^-4	0.905	NON_SYNONYMOUS_CODING Cyp313b1	TF binding site mE1_TFBS_cad
X	1081247	X_1081247_SNP [dm3] X_1187214_SNP [dm6]	G	A	3.316e^-4	0.905	INTRON CG14626	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	21457416	X_21457416_SNP [dm3] X_21586389_SNP [dm6]	A	G	3.320e^-4	0.905	INTERGENIC
3L	2793769	3L_2793769_SNP [dm3] 3L_2793769_SNP [dm6]	G	A	3.324e^-4	0.905	SYNONYMOUS_CODING CG43444	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20827616	X_20827616_MNP [dm3] X_20956589_MNP [dm6]	GGGCTGTTT	TACAAAAAA	3.330e^-4	0.905	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
3L	1189118	3L_1189118_SNP [dm3] 3L_1189118_SNP [dm6]	A	T	3.344e^-4	0.906	UPSTREAM CG13912 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	1074157	X_1074157_SNP [dm3] X_1180124_SNP [dm6]	A	G	3.355e^-4	0.906	UPSTREAM CG11379 INTERGENIC
3L	11338106	3L_11338106_SNP [dm3] 3L_11345006_SNP [dm6]	G	A	3.357e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	12936557	X_12936557_SNP [dm3] X_13042524_SNP [dm6]	T	A	3.374e^-4	0.906	INTRON rad
3R	20101664	3R_20101664_SNP [dm3] 3R_24275942_SNP [dm6]	T	G	3.376e^-4	0.906	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	3241115	2L_3241115_SNP [dm3] 2L_3241115_SNP [dm6]	C	G	3.376e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	13958002	2L_13958002_SNP [dm3] 2L_13958002_SNP [dm6]	G	A	3.391e^-4	0.906	SYNONYMOUS_CODING NimA
3L	8262389	3L_8262389_SNP [dm3] 3L_8269289_SNP [dm6]	T	C	3.394e^-4	0.906	INTRON Dscam4
2R	19393610	2R_19393610_SNP [dm3] 2R_23506087_SNP [dm6]	G	A	3.398e^-4	0.906	DOWNSTREAM CR43794 INTERGENIC
3L	7703105	3L_7703105_SNP [dm3] 3L_7710005_SNP [dm6]	A	T	3.398e^-4	0.906	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	18453814	2R_18453814_SNP [dm3] 2R_22566309_SNP [dm6]	C	T	3.399e^-4	0.906	SYNONYMOUS_CODING dnr1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	11843308	2R_11843308_SNP [dm3] 2R_15955803_SNP [dm6]	G	C	3.408e^-4	0.906	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2266716	X_2266716_SNP [dm3] X_2372683_SNP [dm6]	G	T	3.421e^-4	0.906	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7302828	2L_7302828_INS [dm3] 2L_7302828_INS [dm6]	A	AA	3.424e^-4	0.906	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3L	612970	3L_612970_SNP [dm3] 3L_612970_SNP [dm6]	A	T	3.430e^-4	0.906	INTERGENIC	enhancer mE1_CBP_Enhancers regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8625419	3L_8625419_SNP [dm3] 3L_8632319_SNP [dm6]	G	T	3.449e^-4	0.906	INTRON Zasp66 & 1 other
2R	8111671	2R_8111671_SNP [dm3] 2R_12224166_SNP [dm6]	A	G	3.449e^-4	0.906	DOWNSTREAM CG8854 INTERGENIC
2L	9947718	2L_9947718_SNP [dm3] 2L_9947718_SNP [dm6]	C	G	3.454e^-4	0.906	UPSTREAM CG5853 INTERGENIC
3R	24110102	3R_24110102_SNP [dm3] 3R_28284380_SNP [dm6]	A	G	3.456e^-4	0.906	NON_SYNONYMOUS_CODING CG34437 DOWNSTREAM CG34436
3R	18262745	3R_18262745_SNP [dm3] 3R_22437023_SNP [dm6]	T	C	3.459e^-4	0.906	UPSTREAM CG13847 INTERGENIC
3L	17140032	3L_17140032_SNP [dm3] 3L_17146932_SNP [dm6]	C	T	3.460e^-4	0.906	INTRON Rbp6
3L	21905032	3L_21905032_SNP [dm3] 3L_21911932_SNP [dm6]	C	T	3.468e^-4	0.906	INTRON mub	TF binding site BDTNP1_TFBS_twi
3R	16422833	3R_16422833_SNP [dm3] 3R_20597111_SNP [dm6]	A	C	3.470e^-4	0.906	INTRON bon	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad
X	7424394	X_7424394_SNP [dm3] X_7530361_SNP [dm6]	T	G	3.472e^-4	0.906	INTRON CG32719	regulatory region REDfly_CRMs
X	8617053	X_8617053_SNP [dm3] X_8723020_SNP [dm6]	A	G	3.473e^-4	0.906	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8135994	3R_8135994_SNP [dm3] 3R_12310272_SNP [dm6]	G	T	3.473e^-4	0.906	INTERGENIC
3L	19420793	3L_19420793_SNP [dm3] 3L_19427693_SNP [dm6]	G	A	3.474e^-4	0.906	INTERGENIC
2R	7561111	2R_7561111_SNP [dm3] 2R_11673606_SNP [dm6]	T	C	3.480e^-4	0.906	SYNONYMOUS_CODING Tret1-1 INTRON Roc2	TF binding site BDTNP1_TFBS_da
3L	18096925	3L_18096925_SNP [dm3] 3L_18103825_SNP [dm6]	T	A	3.484e^-4	0.906	INTRON CG13698
X	1092079	X_1092079_SNP [dm3] X_1198046_SNP [dm6]	T	C	3.486e^-4	0.906	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	2601841	2L_2601841_SNP [dm3] 2L_2601841_SNP [dm6]	A	T	3.491e^-4	0.906	UPSTREAM CR44789 INTERGENIC
3L	10114121	3L_10114121_SNP [dm3] 3L_10121021_SNP [dm6]	G	A	3.491e^-4	0.906	INTRON dpr6
3R	16578164	3R_16578164_SNP [dm3] 3R_20752442_SNP [dm6]	A	C	3.492e^-4	0.906	INTRON CG42322	TF binding site BDTNP1_TFBS_dl
2L	8082000	2L_8082000_DEL [dm3] 2L_8082000_DEL [dm6]	CCA	G	3.496e^-4	0.906	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
3R	24215851	3R_24215851_SNP [dm3] 3R_28390129_SNP [dm6]	C	T	3.508e^-4	0.907	INTERGENIC
3L	17564810	3L_17564810_SNP [dm3] 3L_17571710_SNP [dm6]	C	T	3.514e^-4	0.907	INTRON Eip74EF	TF binding site mE1_TFBS_Trl
3R	22379271	3R_22379271_SNP [dm3] 3R_26553549_SNP [dm6]	C	T	3.528e^-4	0.907	INTRON scrib	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
3R	16414826	3R_16414826_SNP [dm3] 3R_20589104_SNP [dm6]	A	C	3.538e^-4	0.907	SYNONYMOUS_CODING Srp72 UPSTREAM Sep2	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2R	11564837	2R_11564837_SNP [dm3] 2R_15677332_SNP [dm6]	T	C	3.548e^-4	0.907	UTR_3_PRIME CG8207 UPSTREAM fus DOWNSTREAM CR45143	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	14240523	2R_14240523_SNP [dm3] 2R_18353018_SNP [dm6]	G	A	3.566e^-4	0.907	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16632743	3L_16632743_SNP [dm3] 3L_16639643_SNP [dm6]	T	G	3.568e^-4	0.907	INTRON Abl
2L	14253604	2L_14253604_SNP [dm3] 2L_14253604_SNP [dm6]	T	G	3.572e^-4	0.907	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9069415	3L_9069415_SNP [dm3] 3L_9076315_SNP [dm6]	C	T	3.581e^-4	0.907	SPLICE_SITE_REGION Tequila INTRON Tequila
X	1035127	X_1035127_DEL [dm3] X_1141094_DEL [dm6]	CT	C	3.583e^-4	0.907	INTERGENIC
3R	15153964	3R_15153964_SNP [dm3] 3R_19328242_SNP [dm6]	A	G	3.584e^-4	0.907	UPSTREAM CR44175 INTERGENIC
3R	2506491	3R_2506491_SNP [dm3] 3R_6680769_SNP [dm6]	C	A	3.585e^-4	0.907	INTERGENIC	regulatory region FlyBase REDfly_CRMs
3L	8625429	3L_8625429_DEL [dm3] 3L_8632329_DEL [dm6]	TT	T	3.586e^-4	0.907	INTRON Zasp66 & 1 other
3R	15778678	3R_15778678_DEL [dm3] 3R_19952956_DEL [dm6]	GG	G	3.593e^-4	0.907	INTRON Hs6st
3L	2630465	3L_2630465_SNP [dm3] 3L_2630465_SNP [dm6]	G	A	3.594e^-4	0.907	UPSTREAM Pxn EXON CR45660
3R	305614	3R_305614_SNP [dm3] 3R_4479892_SNP [dm6]	C	T	3.600e^-4	0.907	UPSTREAM CG31523 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_Ubx
3L	18881887	3L_18881887_SNP [dm3] 3L_18888787_SNP [dm6]	G	A	3.600e^-4	0.907	INTRON CG3961
3R	8113436	3R_8113436_SNP [dm3] 3R_12287714_SNP [dm6]	A	C	3.602e^-4	0.907	INTRON svp
2R	14560243	2R_14560243_SNP [dm3] 2R_18672738_SNP [dm6]	T	G	3.607e^-4	0.907	INTRON edl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	11164495	3R_11164495_SNP [dm3] 3R_15338773_SNP [dm6]	A	G	3.608e^-4	0.907	SYNONYMOUS_CODING CG6218 DOWNSTREAM Sra-1
2R	13939722	2R_13939722_SNP [dm3] 2R_18052217_SNP [dm6]	G	T	3.609e^-4	0.907	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
3L	5051481	3L_5051481_SNP [dm3] 3L_5051481_SNP [dm6]	G	A	3.615e^-4	0.907	UPSTREAM CR43884 INTRON Con
2L	11930143	2L_11930143_SNP [dm3] 2L_11930143_SNP [dm6]	A	G	3.618e^-4	0.907	INTERGENIC
2R	10315559	2R_10315559_SNP [dm3] 2R_14428054_SNP [dm6]	C	T	3.619e^-4	0.907	NON_SYNONYMOUS_CODING phyl	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	5556079	3L_5556079_SNP [dm3] 3L_5562979_SNP [dm6]	G	T	3.639e^-4	0.91	UPSTREAM Sras INTRON Sucb	TF binding site BDTNP1_TFBS_dl
2L	2602846	2L_2602846_SNP [dm3] 2L_2602846_SNP [dm6]	G	A	3.642e^-4	0.91	INTERGENIC
3L	3422900	3L_3422900_SNP [dm3] 3L_3422900_SNP [dm6]	G	A	3.645e^-4	0.91	INTRON sty	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	18113260	3L_18113260_SNP [dm3] 3L_18120160_SNP [dm6]	A	G	3.666e^-4	0.91	NON_SYNONYMOUS_CODING CG7341 DOWNSTREAM CG42853	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	6419103	2L_6419103_SNP [dm3] 2L_6419103_SNP [dm6]	G	C	3.678e^-4	0.91	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	13339240	X_13339240_SNP [dm3] X_13445207_SNP [dm6]	G	T	3.680e^-4	0.91	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	9344329	2R_9344329_SNP [dm3] 2R_13456824_SNP [dm6]	T	C	3.682e^-4	0.91	SYNONYMOUS_CODING arr	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	13570560	2R_13570560_SNP [dm3] 2R_17683055_SNP [dm6]	T	C	3.684e^-4	0.91	UPSTREAM HPS4 & 1 other INTRON Sema-1b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	8053605	2R_8053605_SNP [dm3] 2R_12166100_SNP [dm6]	G	C	3.684e^-4	0.91	UPSTREAM CG34232 DOWNSTREAM Oda INTERGENIC
X	1092614	X_1092614_SNP [dm3] X_1198581_SNP [dm6]	G	C	3.684e^-4	0.91	UPSTREAM CG14625 INTERGENIC
3L	8625439	3L_8625439_SNP [dm3] 3L_8632339_SNP [dm6]	C	G	3.695e^-4	0.91	INTRON Zasp66 & 1 other
3R	27447819	3R_27447819_SNP [dm3] 3R_31622097_SNP [dm6]	G	A	3.702e^-4	0.91	UTR_3_PRIME pasha UPSTREAM kek6 DOWNSTREAM pasha	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	11232958	3R_11232958_SNP [dm3] 3R_15407236_SNP [dm6]	A	G	3.702e^-4	0.91	UPSTREAM CG6125 INTERGENIC
X	14089148	X_14089148_SNP [dm3] X_14195115_SNP [dm6]	C	T	3.707e^-4	0.91	SYNONYMOUS_CODING yl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	18105571	3R_18105571_SNP [dm3] 3R_22279849_SNP [dm6]	G	T	3.709e^-4	0.91	INTRON SKIP
2R	11843293	2R_11843293_SNP [dm3] 2R_15955788_SNP [dm6]	A	G	3.710e^-4	0.91	SYNONYMOUS_CODING CG8366 INTRON Strn-Mlck	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	5847249	3R_5847249_SNP [dm3] 3R_10021527_SNP [dm6]	A	C	3.712e^-4	0.91	UPSTREAM Mical INTRON Mical	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	14171458	2R_14171458_SNP [dm3] 2R_18283953_SNP [dm6]	G	A	3.715e^-4	0.91	SYNONYMOUS_CODING sbb	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	20124228	3R_20124228_SNP [dm3] 3R_24298506_SNP [dm6]	A	T	3.728e^-4	0.912	INTRON crb	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2R	8119400	2R_8119400_SNP [dm3] 2R_12231895_SNP [dm6]	G	T	3.733e^-4	0.912	INTERGENIC
2R	8119486	2R_8119486_SNP [dm3] 2R_12231981_SNP [dm6]	C	A	3.744e^-4	0.913	INTERGENIC
2R	8121537	2R_8121537_SNP [dm3] 2R_12234032_SNP [dm6]	A	G	3.749e^-4	0.913	EXON CR44313
2R	13306555	2R_13306555_SNP [dm3] 2R_17419050_SNP [dm6]	G	A	3.757e^-4	0.914	INTRON cnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_sens
2L	2809210	2L_2809210_SNP [dm3] 2L_2809210_SNP [dm6]	C	T	3.760e^-4	0.914	UTR_5_PRIME daw	TF binding site mE1_TFBS_chinmo
2L	5024377	2L_5024377_SNP [dm3] 2L_5024377_SNP [dm6]	T	C	3.783e^-4	0.914	INTRON vkg	TF binding site mE1_TFBS_cad mE1_TFBS_Trl
X	1424003	X_1424003_SNP [dm3] X_1529970_SNP [dm6]	C	T	3.790e^-4	0.914	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	5552720	3L_5552720_SNP [dm3] 3L_5559620_SNP [dm6]	G	A	3.791e^-4	0.914	UTR_3_PRIME sinu
X	1097976	X_1097976_SNP [dm3] X_1203943_SNP [dm6]	T	C	3.801e^-4	0.914	NON_SYNONYMOUS_CODING CG11381 DOWNSTREAM CG14625
3R	11177318	3R_11177318_SNP [dm3] 3R_15351596_SNP [dm6]	A	C	3.803e^-4	0.914	SYNONYMOUS_CODING CG5038 UPSTREAM Trs33	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	19938558	2L_19938558_SNP [dm3] 2L_19938558_SNP [dm6]	C	T	3.805e^-4	0.914	INTRON sick	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	277776	2L_277776_SNP [dm3] 2L_277776_SNP [dm6]	A	T	3.807e^-4	0.914	START_GAINED smo UTR_5_PRIME CG17078 & 1 other UPSTREAM CG17078	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
2R	18565481	2R_18565481_SNP [dm3] 2R_22677976_SNP [dm6]	C	T	3.810e^-4	0.914	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	15972645	3R_15972645_SNP [dm3] 3R_20146923_SNP [dm6]	T	A	3.811e^-4	0.914	INTERGENIC
3R	2634621	3R_2634621_DEL [dm3] 3R_6808899_DEL [dm6]	TTGTTTT	T	3.813e^-4	0.914	DOWNSTREAM mir-10 EXON CR42651
X	14215570	X_14215570_SNP [dm3] X_14321537_SNP [dm6]	A	T	3.816e^-4	0.914	UPSTREAM dpr8 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14907659	3R_14907659_SNP [dm3] 3R_19081937_SNP [dm6]	G	C	3.837e^-4	0.918	INTRON cdi
2R	10319980	2R_10319980_SNP [dm3] 2R_14432475_SNP [dm6]	G	A	3.846e^-4	0.918	UPSTREAM phyl DOWNSTREAM CR45277 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	1299005	2L_1299005_SNP [dm3] 2L_1299005_SNP [dm6]	C	T	3.846e^-4	0.918	INTERGENIC
3L	6870558	3L_6870558_SNP [dm3] 3L_6877458_SNP [dm6]	G	T	3.850e^-4	0.918	INTERGENIC
2L	951407	2L_951407_SNP [dm3] 2L_951407_SNP [dm6]	G	T	3.857e^-4	0.918	INTRON CG4341	TF binding site mE1_TFBS_chinmo
3L	18066348	3L_18066348_SNP [dm3] 3L_18073248_SNP [dm6]	T	G	3.877e^-4	0.92	INTRON CG44004
X	1082692	X_1082692_SNP [dm3] X_1188659_SNP [dm6]	A	T	3.878e^-4	0.92	DOWNSTREAM CG14626 INTERGENIC
3R	18675747	3R_18675747_SNP [dm3] 3R_22850025_SNP [dm6]	C	T	3.890e^-4	0.92	INTERGENIC
3R	9188851	3R_9188851_SNP [dm3] 3R_13363129_SNP [dm6]	C	T	3.892e^-4	0.92	INTRON poly
X	9277214	X_9277214_SNP [dm3] X_9383181_SNP [dm6]	A	T	3.901e^-4	0.92	INTRON mgl
3L	8470776	3L_8470776_SNP [dm3] 3L_8477676_SNP [dm6]	T	C	3.904e^-4	0.92	SYNONYMOUS_CODING CG43163	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	24215953	3R_24215953_SNP [dm3] 3R_28390231_SNP [dm6]	G	C	3.907e^-4	0.92	INTERGENIC
X	5481021	X_5481021_INS [dm3] X_5586988_INS [dm6]	A	ACTTTATTATTACATTATTA...	3.910e^-4	0.92	INTERGENIC
2R	13542587	2R_13542587_SNP [dm3] 2R_17655082_SNP [dm6]	C	G	3.916e^-4	0.92	INTRON CCHa1-R
3L	2710923	3L_2710923_SNP [dm3] 3L_2710923_SNP [dm6]	A	C	3.916e^-4	0.92	INTRON Fife	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18112706	3L_18112706_SNP [dm3] 3L_18119606_SNP [dm6]	A	C	3.917e^-4	0.92	DOWNSTREAM CG32195 INTRON CG7341	TF binding site mE1_TFBS_cad
2R	16644154	2R_16644154_SNP [dm3] 2R_20756649_SNP [dm6]	G	C	3.943e^-4	0.923	INTERGENIC	TF binding site mE1_TFBS_inv
3R	20101906	3R_20101906_DEL [dm3] 3R_24276184_DEL [dm6]	TTCA	T	3.945e^-4	0.923	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	7158286	2R_7158286_INS [dm3] 2R_11270781_INS [dm6]	T	TAAG	3.953e^-4	0.923	INTRON Cpr47Ef
2R	8024102	2R_8024102_SNP [dm3] 2R_12136597_SNP [dm6]	C	G	3.953e^-4	0.923	INTERGENIC
X	1423964	X_1423964_SNP [dm3] X_1529931_SNP [dm6]	G	T	3.955e^-4	0.923	INTRON Mur2B	TF binding site mE1_TFBS_chinmo
3L	5435892	3L_5435892_SNP [dm3] 3L_5442792_SNP [dm6]	G	C	3.962e^-4	0.923	DOWNSTREAM CG34391 INTERGENIC
3R	15792670	3R_15792670_SNP [dm3] 3R_19966948_SNP [dm6]	T	C	3.974e^-4	0.924	INTRON Hs6st
2R	8110994	2R_8110994_SNP [dm3] 2R_12223489_SNP [dm6]	T	A	3.983e^-4	0.924	DOWNSTREAM CG8854 INTERGENIC
3R	25207582	3R_25207582_SNP [dm3] 3R_29381860_SNP [dm6]	C	T	3.988e^-4	0.924	INTRON Ptp99A
X	2266707	X_2266707_SNP [dm3] X_2372674_SNP [dm6]	G	A	3.991e^-4	0.924	SYNONYMOUS_CODING PsGEF UTR_3_PRIME PsGEF	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4852711	2L_4852711_SNP [dm3] 2L_4852711_SNP [dm6]	G	A	3.992e^-4	0.924	UPSTREAM pog DOWNSTREAM Mon1 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2809484	2L_2809484_SNP [dm3] 2L_2809484_SNP [dm6]	G	A	4.004e^-4	0.926	SYNONYMOUS_CODING daw	TF binding site mE1_TFBS_chinmo
2L	2957742	2L_2957742_SNP [dm3] 2L_2957742_SNP [dm6]	G	A	4.010e^-4	0.926	INTRON Rbp9	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_Trl
3L	5631423	3L_5631423_SNP [dm3] 3L_5638323_SNP [dm6]	G	A	4.023e^-4	0.927	INTRON Blimp-1
3R	24977576	3R_24977576_SNP [dm3] 3R_29151854_SNP [dm6]	A	T	4.025e^-4	0.927	UPSTREAM ligatin DOWNSTREAM Slbp INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25637871	3R_25637871_SNP [dm3] 3R_29812149_SNP [dm6]	T	C	4.027e^-4	0.927	SYNONYMOUS_CODING ca
2R	16530673	2R_16530673_SNP [dm3] 2R_20643168_SNP [dm6]	T	C	4.037e^-4	0.927	SYNONYMOUS_CODING CG33786 UTR_3_PRIME CG33785 UPSTREAM DMAP1 DOWNSTREAM CG11110	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	18061152	3L_18061152_SNP [dm3] 3L_18068052_SNP [dm6]	G	A	4.037e^-4	0.927	DOWNSTREAM CG44006 INTERGENIC
2L	4424932	2L_4424932_SNP [dm3] 2L_4424932_SNP [dm6]	G	A	4.045e^-4	0.927	INTRON CG15431
2L	14253608	2L_14253608_SNP [dm3] 2L_14253608_SNP [dm6]	T	G	4.053e^-4	0.928	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	12373896	X_12373896_DEL [dm3] X_12479863_DEL [dm6]	CACA	C	4.070e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	11868285	3L_11868285_SNP [dm3] 3L_11875185_SNP [dm6]	G	A	4.083e^-4	0.929	INTRON CG44837
3R	1192920	3R_1192920_DEL [dm3] 3R_5367198_DEL [dm6]	CTACAAAATATTATAAATAA...	C	4.084e^-4	0.929	INTRON Cerk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	8121919	2R_8121919_SNP [dm3] 2R_12234414_SNP [dm6]	G	C	4.086e^-4	0.929	EXON CR44313
3L	13848338	3L_13848338_SNP [dm3] 3L_13855238_SNP [dm6]	G	A	4.093e^-4	0.929	NON_SYNONYMOUS_CODING Hml
2R	18511139	2R_18511139_INS [dm3] 2R_22623634_INS [dm6]	A	ACATA	4.112e^-4	0.929	INTRON CG33143
3L	10827946	3L_10827946_SNP [dm3] 3L_10834846_SNP [dm6]	G	A	4.112e^-4	0.929	INTERGENIC
3L	18095791	3L_18095791_SNP [dm3] 3L_18102691_SNP [dm6]	C	T	4.120e^-4	0.929	INTRON CG13698
X	8109313	X_8109313_SNP [dm3] X_8215280_SNP [dm6]	T	C	4.125e^-4	0.929	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	20101767	3R_20101767_SNP [dm3] 3R_24276045_SNP [dm6]	A	G	4.126e^-4	0.929	UPSTREAM Orct DOWNSTREAM Orct2 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	4056347	3L_4056347_SNP [dm3] 3L_4056347_SNP [dm6]	C	T	4.135e^-4	0.929	INTRON CG1136	TF binding site mE1_TFBS_cad
2L	14349044	2L_14349044_SNP [dm3] 2L_14349044_SNP [dm6]	A	G	4.136e^-4	0.929	UTR_3_PRIME l_2_34Fc UPSTREAM CR44850 & 1 other DOWNSTREAM l_2_34Fc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_Ubx
3L	18061343	3L_18061343_SNP [dm3] 3L_18068243_SNP [dm6]	C	G	4.139e^-4	0.929	DOWNSTREAM CG44006 INTERGENIC
2R	8119363	2R_8119363_SNP [dm3] 2R_12231858_SNP [dm6]	C	G	4.147e^-4	0.929	INTERGENIC
X	1070835	X_1070835_SNP [dm3] X_1176802_SNP [dm6]	C	T	4.150e^-4	0.929	UPSTREAM CG11384 INTERGENIC
2L	15536813	2L_15536813_SNP [dm3] 2L_15536813_SNP [dm6]	T	C	4.154e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	2394704	3L_2394704_SNP [dm3] 3L_2394704_SNP [dm6]	C	T	4.156e^-4	0.929	INTRON CG45186	TF binding site BDTNP1_TFBS_hb mE1_TFBS_cad
2L	5869619	2L_5869619_SNP [dm3] 2L_5869619_SNP [dm6]	T	A	4.157e^-4	0.929	INTRON rau	TF binding site BDTNP1_TFBS_twi
2R	7838990	2R_7838990_SNP [dm3] 2R_11951485_SNP [dm6]	A	G	4.161e^-4	0.929	INTRON CG13188
3L	18090847	3L_18090847_SNP [dm3] 3L_18097747_SNP [dm6]	A	T	4.163e^-4	0.929	INTRON CG13698
3L	10909507	3L_10909507_SNP [dm3] 3L_10916407_SNP [dm6]	C	G	4.163e^-4	0.929	INTERGENIC
X	12963597	X_12963597_SNP [dm3] X_13069564_SNP [dm6]	A	G	4.165e^-4	0.929	INTRON rad
2L	20432865	2L_20432865_SNP [dm3] 2L_20432865_SNP [dm6]	T	C	4.177e^-4	0.929	INTRON CG31688
2R	9451425	2R_9451425_SNP [dm3] 2R_13563920_SNP [dm6]	A	C	4.186e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_zfh1
3L	13182577	3L_13182577_SNP [dm3] 3L_13189477_SNP [dm6]	C	T	4.188e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13182572	3L_13182572_SNP [dm3] 3L_13189472_SNP [dm6]	T	A	4.201e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7977647	X_7977647_SNP [dm3] X_8083614_SNP [dm6]	G	T	4.201e^-4	0.929	UPSTREAM CR45535 DOWNSTREAM CG2256 INTERGENIC
3L	8396678	3L_8396678_SNP [dm3] 3L_8403578_SNP [dm6]	G	A	4.202e^-4	0.929	SYNONYMOUS_CODING mkg-p UTR_3_PRIME CG33057	TF binding site mE1_TFBS_sens
3L	20564312	3L_20564312_SNP [dm3] 3L_20571212_SNP [dm6]	G	C	4.203e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23045864	3R_23045864_SNP [dm3] 3R_27220142_SNP [dm6]	G	T	4.209e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	14907826	2L_14907826_SNP [dm3] 2L_14907826_SNP [dm6]	C	A	4.214e^-4	0.929	UTR_3_PRIME CG42313
3L	18118845	3L_18118845_SNP [dm3] 3L_18125745_SNP [dm6]	T	C	4.225e^-4	0.929	INTERGENIC
3L	18118848	3L_18118848_SNP [dm3] 3L_18125748_SNP [dm6]	A	T	4.225e^-4	0.929	INTERGENIC
3L	6150519	3L_6150519_SNP [dm3] 3L_6157419_SNP [dm6]	T	C	4.226e^-4	0.929	UPSTREAM CG13297 DOWNSTREAM Cpr65Ay INTERGENIC
3L	21993891	3L_21993891_SNP [dm3] 3L_22000791_SNP [dm6]	T	C	4.234e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	8511372	2R_8511372_SNP [dm3] 2R_12623867_SNP [dm6]	G	C	4.239e^-4	0.929	UTR_5_PRIME CG30054 DOWNSTREAM Galphaq INTRON CG30054
3R	15815966	3R_15815966_SNP [dm3] 3R_19990244_SNP [dm6]	A	G	4.241e^-4	0.929	INTRON Hs6st
3R	20699405	3R_20699405_SNP [dm3] 3R_24873683_SNP [dm6]	A	G	4.246e^-4	0.929	SYNONYMOUS_CODING CG3744	TF binding site mE1_TFBS_inv
X	13198691	X_13198691_SNP [dm3] X_13304658_SNP [dm6]	A	T	4.254e^-4	0.929	UPSTREAM CR45018 & 1 other INTRON IP3K2 EXON CR45018	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	5367673	X_5367673_DEL [dm3] X_5473640_DEL [dm6]	AGTACAAATCTAAAGTGCCT...	A	4.272e^-4	0.929	INTRON SPR
2R	8072295	2R_8072295_SNP [dm3] 2R_12184790_SNP [dm6]	A	G	4.275e^-4	0.929	NON_SYNONYMOUS_CODING CG33964 UTR_3_PRIME CG13175 UPSTREAM SmF & 1 other	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18192965	2R_18192965_SNP [dm3] 2R_22305460_SNP [dm6]	C	T	4.277e^-4	0.929	INTRON wdp
2L	14253586	2L_14253586_MNP [dm3] 2L_14253586_MNP [dm6]	AACCAGC	TTAGGAT	4.284e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10337332	3L_10337332_SNP [dm3] 3L_10344232_SNP [dm6]	C	A	4.285e^-4	0.929	INTERGENIC	TF binding site mE1_TFBS_Ubx
2R	8541624	2R_8541624_SNP [dm3] 2R_12654119_SNP [dm6]	T	A	4.286e^-4	0.929	NON_SYNONYMOUS_CODING ZnT49B SPLICE_SITE_REGION ZnT49B INTRON ZnT49B
2L	4786625	2L_4786625_SNP [dm3] 2L_4786625_SNP [dm6]	C	T	4.292e^-4	0.929	INTRON CG15630
2R	8635677	2R_8635677_SNP [dm3] 2R_12748172_SNP [dm6]	A	T	4.293e^-4	0.929	INTRON CG42663
2L	14253598	2L_14253598_INS [dm3] 2L_14253598_INS [dm6]	C	TTTA	4.294e^-4	0.929	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12175463	2R_12175463_SNP [dm3] 2R_16287958_SNP [dm6]	G	C	4.305e^-4	0.929	SYNONYMOUS_CODING CG30324 DOWNSTREAM CG30099 & 2 others	TF binding site mE1_TFBS_cad
X	1095949	X_1095949_SNP [dm3] X_1201916_SNP [dm6]	C	T	4.309e^-4	0.929	SYNONYMOUS_CODING CG14625	TF binding site mE1_TFBS_chinmo
3L	6992108	3L_6992108_SNP [dm3] 3L_6999008_SNP [dm6]	G	A	4.313e^-4	0.929	INTRON Mp
X	14412272	X_14412272_SNP [dm3] X_14518239_SNP [dm6]	A	G	4.323e^-4	0.929	INTRON CR44110
2L	7316193	2L_7316193_SNP [dm3] 2L_7316193_SNP [dm6]	C	A	4.335e^-4	0.929	UTR_3_PRIME wg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	14106200	X_14106200_SNP [dm3] X_14212167_SNP [dm6]	C	G	4.339e^-4	0.929	UPSTREAM l_1_G0007 & 1 other INTRON l_1_G0007	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	2409708	3R_2409708_SNP [dm3] 3R_6583986_SNP [dm6]	G	C	4.339e^-4	0.929	INTRON dpr11
X	6590206	X_6590206_SNP [dm3] X_6696173_SNP [dm6]	C	T	4.343e^-4	0.929	UTR_3_PRIME CG14440 DOWNSTREAM CG14440	TF binding site BDTNP1_TFBS_dl
2R	8120816	2R_8120816_SNP [dm3] 2R_12233311_SNP [dm6]	G	A	4.344e^-4	0.929	DOWNSTREAM CR44313 INTERGENIC
3R	18675738	3R_18675738_SNP [dm3] 3R_22850016_SNP [dm6]	A	C	4.350e^-4	0.929	INTERGENIC
3L	14613481	3L_14613481_SNP [dm3] 3L_14620381_SNP [dm6]	C	A	4.354e^-4	0.929	SYNONYMOUS_CODING shd
X	2766937	X_2766937_SNP [dm3] X_2872904_SNP [dm6]	T	C	4.354e^-4	0.929	UPSTREAM CG14416 INTRON kirre
2R	11447540	2R_11447540_SNP [dm3] 2R_15560035_SNP [dm6]	C	A	4.359e^-4	0.929	UPSTREAM CG12963 INTRON CG12963	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	8616968	X_8616968_SNP [dm3] X_8722935_SNP [dm6]	A	G	4.372e^-4	0.93	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	5438291	3L_5438291_SNP [dm3] 3L_5445191_SNP [dm6]	C	G	4.375e^-4	0.93	INTERGENIC
X	13006762	X_13006762_SNP [dm3] X_13112729_SNP [dm6]	C	G	4.392e^-4	0.931	UPSTREAM CG43313 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
X	14588950	X_14588950_SNP [dm3] X_14694917_SNP [dm6]	C	A	4.396e^-4	0.931	INTRON NetB
X	5851187	X_5851187_SNP [dm3] X_5957154_SNP [dm6]	G	A	4.409e^-4	0.931	NON_SYNONYMOUS_CODING CG6067	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7703102	3L_7703102_SNP [dm3] 3L_7710002_SNP [dm6]	A	C	4.416e^-4	0.931	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9024764	3L_9024764_SNP [dm3] 3L_9031664_SNP [dm6]	C	T	4.417e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	27466914	3R_27466914_SNP [dm3] 3R_31641192_SNP [dm6]	T	C	4.424e^-4	0.931	INTRON kek6
2L	22046962	2L_22046962_SNP [dm3] 2L_22046962_SNP [dm6]	T	A	4.429e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	16619601	2R_16619601_SNP [dm3] 2R_20732096_SNP [dm6]	G	A	4.440e^-4	0.931	INTRON dpr
2L	5852734	2L_5852734_SNP [dm3] 2L_5852734_SNP [dm6]	G	T	4.441e^-4	0.931	INTRON TrissinR	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_inv
X	8867781	X_8867781_SNP [dm3] X_8973748_SNP [dm6]	T	G	4.444e^-4	0.931	SYNONYMOUS_CODING CG10962 INTRON rdgA & 1 other
2R	8123913	2R_8123913_SNP [dm3] 2R_12236408_SNP [dm6]	G	C	4.450e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	8118986	2R_8118986_DEL [dm3] 2R_12231481_DEL [dm6]	CGAATCTAAACC...	C	4.457e^-4	0.931	INTERGENIC
3R	25095238	3R_25095238_SNP [dm3] 3R_29269516_SNP [dm6]	A	T	4.457e^-4	0.931	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	9542963	3L_9542963_SNP [dm3] 3L_9549863_SNP [dm6]	A	G	4.459e^-4	0.931	INTRON CG42673
2L	16319325	2L_16319325_SNP [dm3] 2L_16319325_SNP [dm6]	C	G	4.471e^-4	0.931	INTRON cact	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3R	25360354	3R_25360354_SNP [dm3] 3R_29534632_SNP [dm6]	C	G	4.476e^-4	0.931	UPSTREAM CR43613 INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	17311729	3R_17311729_SNP [dm3] 3R_21486007_SNP [dm6]	A	C	4.482e^-4	0.931	NON_SYNONYMOUS_CODING CG7922	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	8104862	2R_8104862_DEL [dm3] 2R_12217357_DEL [dm6]	GG	G	4.485e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv
X	2538280	X_2538280_SNP [dm3] X_2644247_SNP [dm6]	G	A	4.486e^-4	0.931	UPSTREAM sgg INTRON sgg	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	3787783	2L_3787783_SNP [dm3] 2L_3787783_SNP [dm6]	A	T	4.497e^-4	0.931	INTRON CG3921
2L	12796646	2L_12796646_SNP [dm3] 2L_12796646_SNP [dm6]	T	A	4.503e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	9024761	3L_9024761_SNP [dm3] 3L_9031661_SNP [dm6]	G	C	4.505e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	16674309	3L_16674309_SNP [dm3] 3L_16681209_SNP [dm6]	A	G	4.517e^-4	0.931	INTRON Lasp & 1 other	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8905084	3L_8905084_SNP [dm3] 3L_8911984_SNP [dm6]	G	A	4.527e^-4	0.931	NON_SYNONYMOUS_CODING mfr UTR_5_PRIME mfr UPSTREAM Tsp66E
3L	10909390	3L_10909390_SNP [dm3] 3L_10916290_SNP [dm6]	A	T	4.527e^-4	0.931	INTERGENIC
2R	8114368	2R_8114368_SNP [dm3] 2R_12226863_SNP [dm6]	T	C	4.542e^-4	0.931	UPSTREAM CG8854 INTRON CG8854	TF binding site mE1_TFBS_inv
3R	18807436	3R_18807436_SNP [dm3] 3R_22981714_SNP [dm6]	G	A	4.542e^-4	0.931	SYNONYMOUS_CODING Nha2
3R	15616287	3R_15616287_SNP [dm3] 3R_19790565_SNP [dm6]	T	C	4.545e^-4	0.931	UPSTREAM tRNA:CR31215 DOWNSTREAM tRNA:V3b:92Bb INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	18092632	3L_18092632_SNP [dm3] 3L_18099532_SNP [dm6]	C	A	4.560e^-4	0.931	INTRON CG13698
2L	17790410	2L_17790410_SNP [dm3] 2L_17790410_SNP [dm6]	A	T	4.563e^-4	0.931	INTRON CadN2
X	3203985	X_3203985_SNP [dm3] X_3309952_SNP [dm6]	C	G	4.569e^-4	0.931	INTRON dnc
2L	6421083	2L_6421083_SNP [dm3] 2L_6421083_SNP [dm6]	G	A	4.576e^-4	0.931	SYNONYMOUS_CODING Tig	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	2658997	3R_2658997_SNP [dm3] 3R_6833275_SNP [dm6]	A	T	4.577e^-4	0.931	INTRON Scr	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
3L	14991247	3L_14991247_SNP [dm3] 3L_14998147_SNP [dm6]	G	A	4.583e^-4	0.931	DOWNSTREAM Zip71B INTRON mRpL39
3R	26218872	3R_26218872_SNP [dm3] 3R_30393150_SNP [dm6]	G	T	4.587e^-4	0.931	INTERGENIC
2R	19464130	2R_19464130_SNP [dm3] 2R_23576607_SNP [dm6]	G	C	4.589e^-4	0.931	INTRON apt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	5062506	3L_5062506_SNP [dm3] 3L_5062506_SNP [dm6]	A	G	4.597e^-4	0.931	INTRON Con
3L	17012888	3L_17012888_SNP [dm3] 3L_17019788_SNP [dm6]	T	A	4.600e^-4	0.931	SYNONYMOUS_CODING CG7728 DOWNSTREAM CG6652	TF binding site mE1_TFBS_cad
3R	25129457	3R_25129457_SNP [dm3] 3R_29303735_SNP [dm6]	C	T	4.602e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA
2R	11927611	2R_11927611_SNP [dm3] 2R_16040106_SNP [dm6]	T	A	4.607e^-4	0.931	INTRON SP2353	TF binding site mE1_TFBS_cad
X	1068995	X_1068995_SNP [dm3] X_1174962_SNP [dm6]	C	G	4.610e^-4	0.931	NON_SYNONYMOUS_CODING CG11384	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	15702325	3R_15702325_SNP [dm3] 3R_19876603_SNP [dm6]	C	G	4.610e^-4	0.931	SYNONYMOUS_CODING CG17186 UPSTREAM CG4562	TF binding site mE1_TFBS_sens
2L	11930121	2L_11930121_SNP [dm3] 2L_11930121_SNP [dm6]	G	T	4.621e^-4	0.931	INTERGENIC
2L	10897908	2L_10897908_DEL [dm3] 2L_10897908_DEL [dm6]	GCATATATATATGGCATACA...	G	4.625e^-4	0.931	INTERGENIC
X	5253589	X_5253589_DEL [dm3] X_5359556_DEL [dm6]	TT	T	4.629e^-4	0.931	INTRON SK
X	20333495	X_20333495_SNP [dm3] X_20462468_SNP [dm6]	A	C	4.629e^-4	0.931	SYNONYMOUS_CODING CG32506	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1289598	3L_1289598_INS [dm3] 3L_1289598_INS [dm6]	T	TC	4.634e^-4	0.931	INTRON CG32333
X	8913520	X_8913520_SNP [dm3] X_9019487_SNP [dm6]	G	A	4.646e^-4	0.931	SYNONYMOUS_CODING rdgA INTRON CR43836
2L	14253596	2L_14253596_SNP [dm3] 2L_14253596_SNP [dm6]	G	T	4.652e^-4	0.931	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10112971	3L_10112971_SNP [dm3] 3L_10119871_SNP [dm6]	C	T	4.657e^-4	0.931	INTRON dpr6
X	20474240	X_20474240_SNP [dm3] X_20603213_SNP [dm6]	G	A	4.657e^-4	0.931	INTRON RunxA
3L	4062675	3L_4062675_SNP [dm3] 3L_4062675_SNP [dm6]	T	A	4.657e^-4	0.931	NON_SYNONYMOUS_CODING dib DOWNSTREAM CG18869	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	14829590	X_14829590_SNP [dm3] X_14935557_SNP [dm6]	A	C	4.664e^-4	0.931	INTRON pdgy
3L	5229469	3L_5229469_SNP [dm3] 3L_5236369_SNP [dm6]	C	T	4.670e^-4	0.931	SYNONYMOUS_CODING CG4669 INTRON shep
3R	18132956	3R_18132956_SNP [dm3] 3R_22307234_SNP [dm6]	C	A	4.676e^-4	0.931	INTERGENIC
3L	13920904	3L_13920904_SNP [dm3] 3L_13927804_SNP [dm6]	A	T	4.678e^-4	0.931	NON_SYNONYMOUS_CODING CG8833
2L	1262732	2L_1262732_SNP [dm3] 2L_1262732_SNP [dm6]	G	A	4.679e^-4	0.931	INTRON robo3
X	16421843	X_16421843_SNP [dm3] X_16527810_SNP [dm6]	G	T	4.686e^-4	0.931	UTR_5_PRIME para UPSTREAM para
2L	4415376	2L_4415376_SNP [dm3] 2L_4415376_SNP [dm6]	G	A	4.689e^-4	0.931	INTRON CG15431
2R	11227721	2R_11227721_SNP [dm3] 2R_15340216_SNP [dm6]	A	T	4.691e^-4	0.931	UPSTREAM unc-5 DOWNSTREAM Hr51 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_zfh1
X	9115956	X_9115956_SNP [dm3] X_9221923_SNP [dm6]	G	C	4.695e^-4	0.931	INTRON t
3R	15153989	3R_15153989_SNP [dm3] 3R_19328267_SNP [dm6]	T	A	4.696e^-4	0.931	UPSTREAM CR44175 INTERGENIC
3R	19085518	3R_19085518_SNP [dm3] 3R_23259796_SNP [dm6]	A	C	4.699e^-4	0.931	SYNONYMOUS_CODING CG13827 DOWNSTREAM orb
3R	23122439	3R_23122439_SNP [dm3] 3R_27296717_SNP [dm6]	T	G	4.701e^-4	0.931	SYNONYMOUS_CODING CG3339	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25537112	3R_25537112_SNP [dm3] 3R_29711390_SNP [dm6]	G	A	4.703e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	6077097	3L_6077097_SNP [dm3] 3L_6083997_SNP [dm6]	C	T	4.716e^-4	0.931	INTRON CG13293
2R	8022183	2R_8022183_SNP [dm3] 2R_12134678_SNP [dm6]	C	T	4.724e^-4	0.931	INTERGENIC
2L	2682644	2L_2682644_SNP [dm3] 2L_2682644_SNP [dm6]	C	G	4.726e^-4	0.931	INTRON CG31690
3L	3485571	3L_3485571_SNP [dm3] 3L_3485571_SNP [dm6]	T	G	4.743e^-4	0.931	UPSTREAM CG43074 & 1 other INTRON CG42324
2L	2228139	2L_2228139_SNP [dm3] 2L_2228139_SNP [dm6]	C	T	4.750e^-4	0.931	UPSTREAM CR44114 INTRON rti	TF binding site BDTNP1_TFBS_dl
2R	13085372	2R_13085372_SNP [dm3] 2R_17197867_SNP [dm6]	A	T	4.753e^-4	0.931	DOWNSTREAM CG10950 INTERGENIC
2R	17528440	2R_17528440_SNP [dm3] 2R_21640935_SNP [dm6]	C	A	4.753e^-4	0.931	INTERGENIC
2R	8115828	2R_8115828_SNP [dm3] 2R_12228323_SNP [dm6]	T	A	4.757e^-4	0.931	INTRON CG8854
3L	11318976	3L_11318976_SNP [dm3] 3L_11325876_SNP [dm6]	G	A	4.761e^-4	0.931	UPSTREAM CR44723 INTERGENIC
3R	18883857	3R_18883857_INS [dm3] 3R_23058135_INS [dm6]	A	AA	4.762e^-4	0.931	UPSTREAM CG17119 DOWNSTREAM sav INTRON CG17119	TF binding site BDTNP1_TFBS_twi
X	20827607	X_20827607_SNP [dm3] X_20956580_SNP [dm6]	T	A	4.765e^-4	0.931	INTERGENIC	TF binding site mE1_TFBS_inv transposable element FlyBase
3L	621614	3L_621614_SNP [dm3] 3L_621614_SNP [dm6]	C	T	4.771e^-4	0.931	INTRON CG43337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Stat92E
2R	4495293	2R_4495293_SNP [dm3] 2R_8607788_SNP [dm6]	A	T	4.776e^-4	0.931	INTRON rgr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21061102	3L_21061102_SNP [dm3] 3L_21068002_SNP [dm6]	T	A	4.777e^-4	0.931	UTR_5_PRIME siz INTRON siz	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13035988	2L_13035988_SNP [dm3] 2L_13035988_SNP [dm6]	C	A	4.779e^-4	0.931	INTRON CG9932	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	8082295	2L_8082295_SNP [dm3] 2L_8082295_SNP [dm6]	T	A	4.781e^-4	0.931	UPSTREAM CR45257 INTRON Mcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	12909756	2R_12909756_SNP [dm3] 2R_17022251_SNP [dm6]	C	T	4.788e^-4	0.931	SYNONYMOUS_CODING Ark	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	9523298	X_9523298_SNP [dm3] X_9629265_SNP [dm6]	T	G	4.789e^-4	0.931	SYNONYMOUS_CODING l_1_G0232
2R	19675945	2R_19675945_SNP [dm3] 2R_23788422_SNP [dm6]	T	C	4.804e^-4	0.933	INTRON CG9850
2L	888101	2L_888101_SNP [dm3] 2L_888101_SNP [dm6]	A	T	4.823e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11184899	2L_11184899_SNP [dm3] 2L_11184899_SNP [dm6]	T	C	4.836e^-4	0.934	INTRON Ca-beta	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_sens
X	15505699	X_15505699_DEL [dm3] X_15611666_DEL [dm6]	AA	A	4.837e^-4	0.934	INTRON sog	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	6270398	3L_6270398_SNP [dm3] 3L_6277298_SNP [dm6]	C	T	4.841e^-4	0.934	DOWNSTREAM CG43168 INTERGENIC
3R	25537518	3R_25537518_SNP [dm3] 3R_29711796_SNP [dm6]	C	A	4.853e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	662707	2L_662707_INS [dm3] 2L_662707_INS [dm6]	G	GG	4.855e^-4	0.934	INTRON ds	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25486879	3R_25486879_SNP [dm3] 3R_29661157_SNP [dm6]	C	G	4.861e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	12418186	2R_12418186_SNP [dm3] 2R_16530681_SNP [dm6]	G	A	4.863e^-4	0.934	INTRON Sema-2a	TF binding site BDTNP1_TFBS_twi
2L	2656463	2L_2656463_SNP [dm3] 2L_2656463_SNP [dm6]	G	C	4.880e^-4	0.934	UTR_3_PRIME Prosbeta4R2 DOWNSTREAM Prosbeta4R2
2R	8666658	2R_8666658_SNP [dm3] 2R_12779153_SNP [dm6]	C	A	4.884e^-4	0.934	DOWNSTREAM CR45266 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18707474	2R_18707474_SNP [dm3] 2R_22819969_SNP [dm6]	T	G	4.885e^-4	0.934	INTRON CG30271	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8415765	X_8415765_SNP [dm3] X_8521732_SNP [dm6]	T	A	4.889e^-4	0.934	INTRON Nrg
3L	1988861	3L_1988861_SNP [dm3] 3L_1988861_SNP [dm6]	A	T	4.894e^-4	0.934	INTERGENIC	TF binding site mE1_TFBS_inv
3L	1310285	3L_1310285_SNP [dm3] 3L_1310285_SNP [dm6]	A	G	4.898e^-4	0.934	SYNONYMOUS_CODING CG2469	TF binding site mE1_TFBS_cad
2R	8125236	2R_8125236_SNP [dm3] 2R_12237731_SNP [dm6]	G	A	4.899e^-4	0.934	INTERGENIC
3L	13182560	3L_13182560_SNP [dm3] 3L_13189460_SNP [dm6]	A	C	4.900e^-4	0.934	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	26652613	3R_26652613_SNP [dm3] 3R_30826891_SNP [dm6]	C	T	4.910e^-4	0.934	UTR_3_PRIME cindr UPSTREAM CG15544 DOWNSTREAM cindr
2R	10863802	2R_10863802_SNP [dm3] 2R_14976297_SNP [dm6]	T	C	4.911e^-4	0.934	INTRON ckn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	14412371	X_14412371_SNP [dm3] X_14518338_SNP [dm6]	C	T	4.919e^-4	0.934	INTRON CR44110
2R	8112937	2R_8112937_SNP [dm3] 2R_12225432_SNP [dm6]	G	A	4.925e^-4	0.934	INTRON CG8854
2R	11564395	2R_11564395_SNP [dm3] 2R_15676890_SNP [dm6]	T	A	4.926e^-4	0.934	UPSTREAM fus DOWNSTREAM CG8207 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7526438	2L_7526438_SNP [dm3] 2L_7526438_SNP [dm6]	G	A	4.927e^-4	0.934	INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11664841	2R_11664841_SNP [dm3] 2R_15777336_SNP [dm6]	A	C	4.927e^-4	0.934	INTRON Zasp52
X	8087093	X_8087093_SNP [dm3] X_8193060_SNP [dm6]	A	G	4.929e^-4	0.934	UPSTREAM sdt INTRON sdt	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sbb
2R	13004146	2R_13004146_SNP [dm3] 2R_17116641_SNP [dm6]	T	C	4.937e^-4	0.934	INTERGENIC
3L	5132065	3L_5132065_SNP [dm3] 3L_5138965_SNP [dm6]	A	G	4.955e^-4	0.936	SYNONYMOUS_CODING Prpk UPSTREAM CHMP2B DOWNSTREAM CG4611	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3L	9304374	3L_9304374_SNP [dm3] 3L_9311274_SNP [dm6]	A	T	4.973e^-4	0.936	INTERGENIC
3R	14518399	3R_14518399_SNP [dm3] 3R_18692677_SNP [dm6]	T	G	4.982e^-4	0.936	NON_SYNONYMOUS_CODING Muc91C DOWNSTREAM CG14300
3L	15994698	3L_15994698_SNP [dm3] 3L_16001598_SNP [dm6]	A	G	4.982e^-4	0.936	INTRON CG5830	TF binding site BDTNP1_TFBS_dl
X	13339050	X_13339050_SNP [dm3] X_13445017_SNP [dm6]	T	C	4.983e^-4	0.936	UPSTREAM Neto INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3R	16085031	3R_16085031_SNP [dm3] 3R_20259309_SNP [dm6]	G	A	4.983e^-4	0.936	INTRON cic
3R	26219479	3R_26219479_SNP [dm3] 3R_30393757_SNP [dm6]	T	C	4.988e^-4	0.936	INTERGENIC
3R	19531403	3R_19531403_SNP [dm3] 3R_23705681_SNP [dm6]	G	A	4.990e^-4	0.936	SYNONYMOUS_CODING CG31414 DOWNSTREAM CR44052	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med
3L	10486123	3L_10486123_SNP [dm3] 3L_10493023_SNP [dm6]	C	T	4.992e^-4	0.936	DOWNSTREAM S-Lap4 INTRON A2bp1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv

By genomic position
Variant impact
Gene name

Surv_AAmanitin_2ug phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results