DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.125e^-5)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
In_2R_NS	0.0274

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	8.1759	0.0168

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2107 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	1337347	2L_1337347_SNP [dm3] 2L_1337347_SNP [dm6]	A	C	2.051e^-6	0.862	INTERGENIC	TF binding site mE1_TFBS_inv
2L	21052421	2L_21052421_SNP [dm3] 2L_21052421_SNP [dm6]	A	C	2.124e^-6	0.862	UPSTREAM CG42238 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Ubx
2R	17154790	2R_17154790_SNP [dm3] 2R_21267285_SNP [dm6]	A	G	2.366e^-6	0.862	SYNONYMOUS_CODING CG30393 UPSTREAM CG30391 INTRON Rgk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12374265	2R_12374265_SNP [dm3] 2R_16486760_SNP [dm6]	T	C	3.337e^-6	0.862	SYNONYMOUS_CODING CG33458
2R	2116391	2R_2116391_SNP [dm3] 2R_6228886_SNP [dm6]	C	T	3.656e^-6	0.862	UPSTREAM bin3 INTRON bin3	TF binding site BDTNP1_TFBS_dl
2R	17154921	2R_17154921_SNP [dm3] 2R_21267416_SNP [dm6]	G	A	3.821e^-6	0.862	SYNONYMOUS_CODING CG30393 INTRON Rgk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	13657696	2R_13657696_SNP [dm3] 2R_17770191_SNP [dm6]	C	T	4.568e^-6	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	9598332	2L_9598332_SNP [dm3] 2L_9598332_SNP [dm6]	T	C	4.709e^-6	0.862	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
X	4157387	X_4157387_SNP [dm3] X_4263354_SNP [dm6]	T	C	5.284e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18110792	3L_18110792_SNP [dm3] 3L_18117692_SNP [dm6]	C	T	5.806e^-6	0.862	UTR_3_PRIME CG32195 INTRON CG7341
3L	9019867	3L_9019867_SNP [dm3] 3L_9026767_SNP [dm6]	C	A	6.187e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	1649169	2L_1649169_SNP [dm3] 2L_1649169_SNP [dm6]	A	G	6.424e^-6	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	17867233	3L_17867233_SNP [dm3] 3L_17874133_SNP [dm6]	G	T	6.882e^-6	0.862	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	18741574	2R_18741574_SNP [dm3] 2R_22854051_SNP [dm6]	C	T	7.456e^-6	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3708289	2L_3708289_SNP [dm3] 2L_3708289_SNP [dm6]	C	T	7.958e^-6	0.862	INTRON cutlet	TF binding site mE1_TFBS_cad
X	19752469	X_19752469_SNP [dm3] X_19858436_SNP [dm6]	C	A	1.010e^-5	0.862	SYNONYMOUS_CODING Nup205	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	9019892	3L_9019892_SNP [dm3] 3L_9026792_SNP [dm6]	T	A	1.029e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2L	3709184	2L_3709184_SNP [dm3] 2L_3709184_SNP [dm6]	G	A	1.112e^-5	0.862	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
2L	3221835	2L_3221835_SNP [dm3] 2L_3221835_SNP [dm6]	T	G	1.122e^-5	0.862	INTERGENIC
3L	9019849	3L_9019849_SNP [dm3] 3L_9026749_SNP [dm6]	A	G	1.141e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	15035964	2R_15035964_SNP [dm3] 2R_19148459_SNP [dm6]	T	A	1.187e^-5	0.862	INTRON ena	TF binding site BDTNP1_TFBS_dl
3L	8021848	3L_8021848_SNP [dm3] 3L_8028748_SNP [dm6]	T	C	1.246e^-5	0.862	UPSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_sens
3L	10474978	3L_10474978_SNP [dm3] 3L_10481878_SNP [dm6]	G	A	1.299e^-5	0.862	UTR_5_PRIME A2bp1
3L	4338219	3L_4338219_SNP [dm3] 3L_4338219_SNP [dm6]	A	G	1.328e^-5	0.862	INTRON Cip4	TF binding site mE1_TFBS_inv
2R	20225490	2R_20225490_SNP [dm3] 2R_24337967_SNP [dm6]	T	C	1.349e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
X	4571596	X_4571596_SNP [dm3] X_4677563_SNP [dm6]	G	T	1.357e^-5	0.862	UPSTREAM rap INTRON rap	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	13651934	2R_13651934_SNP [dm3] 2R_17764429_SNP [dm6]	T	A	1.408e^-5	0.862	UTR_3_PRIME CG5009 DOWNSTREAM OstDelta
2R	14581186	2R_14581186_SNP [dm3] 2R_18693681_SNP [dm6]	A	C	1.430e^-5	0.862	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	3221896	2L_3221896_SNP [dm3] 2L_3221896_SNP [dm6]	C	T	1.433e^-5	0.862	INTERGENIC
3L	9019884	3L_9019884_SNP [dm3] 3L_9026784_SNP [dm6]	A	T	1.466e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
2R	11633585	2R_11633585_SNP [dm3] 2R_15746080_SNP [dm6]	G	C	1.589e^-5	0.862	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	9598299	2L_9598299_SNP [dm3] 2L_9598299_SNP [dm6]	G	A	1.598e^-5	0.862	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	9011421	3L_9011421_SNP [dm3] 3L_9018321_SNP [dm6]	G	A	1.606e^-5	0.862	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8020395	3L_8020395_SNP [dm3] 3L_8027295_SNP [dm6]	C	T	1.670e^-5	0.862	INTRON nmo	TF binding site mE1_TFBS_cad
2R	8334505	2R_8334505_SNP [dm3] 2R_12447000_SNP [dm6]	G	T	1.734e^-5	0.862	INTRON Dyb
2L	20389298	2L_20389298_SNP [dm3] 2L_20389298_SNP [dm6]	A	T	1.902e^-5	0.862	INTRON CG10947
2L	10495582	2L_10495582_SNP [dm3] 2L_10495582_SNP [dm6]	A	G	1.977e^-5	0.862	INTRON Myo31DF
2R	20227794	2R_20227794_SNP [dm3] 2R_24340271_SNP [dm6]	C	G	1.982e^-5	0.862	INTERGENIC
2R	13657644	2R_13657644_SNP [dm3] 2R_17770139_SNP [dm6]	C	T	2.062e^-5	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10475241	3L_10475241_SNP [dm3] 3L_10482141_SNP [dm6]	C	G	2.185e^-5	0.862	INTRON A2bp1
2L	3709240	2L_3709240_SNP [dm3] 2L_3709240_SNP [dm6]	C	A	2.188e^-5	0.862	INTRON cutlet	TF binding site mE1_TFBS_cad
2R	11633588	2R_11633588_SNP [dm3] 2R_15746083_SNP [dm6]	C	T	2.304e^-5	0.862	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	19482135	2R_19482135_SNP [dm3] 2R_23594612_SNP [dm6]	G	C	2.338e^-5	0.862	INTRON apt	TF binding site mE1_TFBS_sens
2L	6372607	2L_6372607_SNP [dm3] 2L_6372607_SNP [dm6]	G	C	2.369e^-5	0.862	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4969182	3L_4969182_SNP [dm3] 3L_4969182_SNP [dm6]	C	A	2.398e^-5	0.862	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	3708210	2L_3708210_SNP [dm3] 2L_3708210_SNP [dm6]	G	A	2.457e^-5	0.862	SYNONYMOUS_CODING cutlet	TF binding site mE1_TFBS_cad
3L	8020947	3L_8020947_SNP [dm3] 3L_8027847_SNP [dm6]	G	A	2.487e^-5	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	5027206	3R_5027206_DEL [dm3] 3R_9201484_DEL [dm6]	AGGGGCGA	A	2.541e^-5	0.862	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	8268475	2L_8268475_SNP [dm3] 2L_8268475_SNP [dm6]	T	C	2.543e^-5	0.862	INTRON Btk29A	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	7508743	2R_7508743_SNP [dm3] 2R_11621238_SNP [dm6]	G	A	2.557e^-5	0.862	SYNONYMOUS_CODING CG9005	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
X	20431538	X_20431538_SNP [dm3] X_20560511_SNP [dm6]	C	T	2.573e^-5	0.862	INTRON RunxB
3L	17297619	3L_17297619_SNP [dm3] 3L_17304519_SNP [dm6]	C	T	2.688e^-5	0.862	INTERGENIC
2R	6786638	2R_6786638_SNP [dm3] 2R_10899133_SNP [dm6]	T	A	2.750e^-5	0.862	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	22924198	3L_22924198_SNP [dm3] 3L_22931098_SNP [dm6]	A	T	2.770e^-5	0.862	INTERGENIC
3L	1263619	3L_1263619_SNP [dm3] 3L_1263619_SNP [dm6]	G	C	2.796e^-5	0.862	INTRON CG9134
2R	19482133	2R_19482133_SNP [dm3] 2R_23594610_SNP [dm6]	A	G	2.798e^-5	0.862	INTRON apt	TF binding site mE1_TFBS_sens
3R	16010065	3R_16010065_SNP [dm3] 3R_20184343_SNP [dm6]	C	T	2.807e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6942895	2L_6942895_SNP [dm3] 2L_6942895_SNP [dm6]	G	C	2.875e^-5	0.862	UPSTREAM CG18304 DOWNSTREAM CG10158 INTERGENIC
2L	15637005	2L_15637005_SNP [dm3] 2L_15637005_SNP [dm6]	A	G	2.878e^-5	0.862	INTERGENIC
2R	18342893	2R_18342893_SNP [dm3] 2R_22455388_SNP [dm6]	C	A	2.916e^-5	0.862	UTR_5_PRIME CG10384
3L	1263533	3L_1263533_SNP [dm3] 3L_1263533_SNP [dm6]	C	A	2.971e^-5	0.862	INTRON CG9134
2L	14670341	2L_14670341_SNP [dm3] 2L_14670341_SNP [dm6]	C	G	3.005e^-5	0.862	INTRON osp
2L	4008338	2L_4008338_SNP [dm3] 2L_4008338_SNP [dm6]	G	A	3.114e^-5	0.862	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	3708954	2L_3708954_SNP [dm3] 2L_3708954_SNP [dm6]	T	C	3.160e^-5	0.862	INTRON cutlet	TF binding site mE1_TFBS_cad
2L	3199886	2L_3199886_SNP [dm3] 2L_3199886_SNP [dm6]	A	G	3.212e^-5	0.862	UPSTREAM CG34393 INTRON CG34393
3R	14884001	3R_14884001_SNP [dm3] 3R_19058279_SNP [dm6]	T	A	3.214e^-5	0.862	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10474283	3L_10474283_SNP [dm3] 3L_10481183_SNP [dm6]	C	T	3.244e^-5	0.862	UPSTREAM A2bp1 INTERGENIC
3L	18107754	3L_18107754_SNP [dm3] 3L_18114654_SNP [dm6]	C	T	3.295e^-5	0.862	SYNONYMOUS_CODING CG32195 INTRON CG7341	TF binding site mE1_TFBS_sens
2L	15637422	2L_15637422_SNP [dm3] 2L_15637422_SNP [dm6]	G	A	3.312e^-5	0.862	INTERGENIC
3L	8019127	3L_8019127_SNP [dm3] 3L_8026027_SNP [dm6]	A	G	3.328e^-5	0.862	INTRON nmo
2L	17416459	2L_17416459_SNP [dm3] 2L_17416459_SNP [dm6]	A	G	3.343e^-5	0.862	SYNONYMOUS_CODING Dif INTRON Dif
3L	1392582	3L_1392582_SNP [dm3] 3L_1392582_SNP [dm6]	T	C	3.359e^-5	0.862	INTRON Ptp61F	TF binding site mE1_TFBS_cad
2L	20392466	2L_20392466_SNP [dm3] 2L_20392466_SNP [dm6]	C	A	3.365e^-5	0.862	INTRON CG10947
2R	18741182	2R_18741182_SNP [dm3] 2R_22853659_SNP [dm6]	T	C	3.427e^-5	0.862	SYNONYMOUS_CODING CG13531 UPSTREAM RpL23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	14509307	3L_14509307_SNP [dm3] 3L_14516207_SNP [dm6]	G	T	3.490e^-5	0.862	INTRON bbg
3R	12491303	3R_12491303_SNP [dm3] 3R_16665581_SNP [dm6]	T	C	3.597e^-5	0.862	INTRON Ubx
2L	6372516	2L_6372516_SNP [dm3] 2L_6372516_SNP [dm6]	G	C	3.600e^-5	0.862	UTR_5_PRIME slam UPSTREAM slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3200108	2L_3200108_SNP [dm3] 2L_3200108_SNP [dm6]	C	T	3.615e^-5	0.862	UPSTREAM CG34393 INTRON CG34393
3L	14229560	3L_14229560_SNP [dm3] 3L_14236460_SNP [dm6]	A	G	3.682e^-5	0.862	UPSTREAM CG7906 & 1 other INTERGENIC
3L	14223046	3L_14223046_SNP [dm3] 3L_14229946_SNP [dm6]	C	G	3.846e^-5	0.862	UTR_5_PRIME nuf INTRON nuf
2R	12102290	2R_12102290_SNP [dm3] 2R_16214785_SNP [dm6]	A	T	4.096e^-5	0.862	INTRON mrj
2L	21926543	2L_21926543_SNP [dm3] 2L_21926543_SNP [dm6]	G	A	4.158e^-5	0.862	INTERGENIC
X	12856440	X_12856440_SNP [dm3] X_12962407_SNP [dm6]	G	A	4.321e^-5	0.862	INTERGENIC
3L	10474263	3L_10474263_SNP [dm3] 3L_10481163_SNP [dm6]	A	C	4.515e^-5	0.862	UPSTREAM A2bp1 INTERGENIC
X	20430305	X_20430305_SNP [dm3] X_20559278_SNP [dm6]	T	A	4.576e^-5	0.862	INTRON RunxB
X	3480882	X_3480882_SNP [dm3] X_3586849_SNP [dm6]	G	A	4.585e^-5	0.862	INTRON AstA-R1
3R	965200	3R_965200_SNP [dm3] 3R_5139478_SNP [dm6]	C	A	4.641e^-5	0.862	UPSTREAM CG12589 INTERGENIC
2L	6942917	2L_6942917_SNP [dm3] 2L_6942917_SNP [dm6]	G	A	4.672e^-5	0.862	UPSTREAM CG18304 DOWNSTREAM CG10158 INTERGENIC
2L	21050723	2L_21050723_SNP [dm3] 2L_21050723_SNP [dm6]	G	T	4.698e^-5	0.862	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	10743302	X_10743302_SNP [dm3] X_10849269_SNP [dm6]	G	C	4.795e^-5	0.862	SYNONYMOUS_CODING CG2202 DOWNSTREAM CG17333	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4107993	X_4107993_SNP [dm3] X_4213960_SNP [dm6]	G	A	5.004e^-5	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
2R	7512597	2R_7512597_SNP [dm3] 2R_11625092_SNP [dm6]	C	G	5.087e^-5	0.862	NON_SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	17586787	2R_17586787_SNP [dm3] 2R_21699282_SNP [dm6]	C	T	5.125e^-5	0.862	INTRON HmgZ	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	4651421	2L_4651421_SNP [dm3] 2L_4651421_SNP [dm6]	G	A	5.137e^-5	0.862	UTR_5_PRIME CG3355 UPSTREAM CG3355
3L	8021004	3L_8021004_INS [dm3] 3L_8027904_INS [dm6]	T	TACT	5.140e^-5	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9831585	2L_9831585_SNP [dm3] 2L_9831585_SNP [dm6]	C	T	5.146e^-5	0.862	INTRON nAChRalpha6
3L	15996860	3L_15996860_SNP [dm3] 3L_16003760_SNP [dm6]	G	C	5.343e^-5	0.862	INTRON CG5830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	21785923	3R_21785923_SNP [dm3] 3R_25960201_SNP [dm6]	C	T	5.348e^-5	0.862	SYNONYMOUS_CODING CG14540
3L	20618992	3L_20618992_SNP [dm3] 3L_20625892_SNP [dm6]	T	C	5.423e^-5	0.862	UPSTREAM CR44680 DOWNSTREAM CR44683 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16018033	2R_16018033_SNP [dm3] 2R_20130528_SNP [dm6]	G	A	5.510e^-5	0.862	INTERGENIC
2R	17154775	2R_17154775_SNP [dm3] 2R_21267270_SNP [dm6]	A	G	5.557e^-5	0.862	SYNONYMOUS_CODING CG30393 UPSTREAM CG30391 INTRON Rgk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9831596	2L_9831596_SNP [dm3] 2L_9831596_SNP [dm6]	C	T	5.621e^-5	0.862	INTRON nAChRalpha6
2R	18103724	2R_18103724_SNP [dm3] 2R_22216219_SNP [dm6]	G	T	5.664e^-5	0.862	INTRON ari-2
2L	4445028	2L_4445028_SNP [dm3] 2L_4445028_SNP [dm6]	A	G	5.765e^-5	0.862	SYNONYMOUS_CODING Elp3 UPSTREAM morgue	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	4107915	X_4107915_SNP [dm3] X_4213882_SNP [dm6]	T	C	5.828e^-5	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	6198539	2L_6198539_SNP [dm3] 2L_6198539_SNP [dm6]	T	A	5.916e^-5	0.862	INTRON CG34380
3L	2020903	3L_2020903_SNP [dm3] 3L_2020903_SNP [dm6]	G	A	5.919e^-5	0.862	SYNONYMOUS_CODING CG42357
2R	13744132	2R_13744132_SNP [dm3] 2R_17856627_SNP [dm6]	T	A	5.977e^-5	0.862	UTR_5_PRIME olf186-F INTRON olf186-F
3R	10591244	3R_10591244_SNP [dm3] 3R_14765522_SNP [dm6]	T	C	6.092e^-5	0.862	INTRON jvl
2L	3560668	2L_3560668_SNP [dm3] 2L_3560668_SNP [dm6]	T	C	6.094e^-5	0.862	INTERGENIC
2L	3200103	2L_3200103_SNP [dm3] 2L_3200103_SNP [dm6]	T	A	6.191e^-5	0.862	UPSTREAM CG34393 INTRON CG34393
3L	2893776	3L_2893776_INS [dm3] 3L_2893776_INS [dm6]	A	AC	6.207e^-5	0.862	INTERGENIC
3R	12045224	3R_12045224_SNP [dm3] 3R_16219502_SNP [dm6]	T	C	6.383e^-5	0.862	INTERGENIC
2R	18799877	2R_18799877_SNP [dm3] 2R_22912354_SNP [dm6]	G	T	6.425e^-5	0.862	SPLICE_SITE_REGION nahoda INTRON nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	17811021	X_17811021_SNP [dm3] X_17916988_SNP [dm6]	C	G	6.474e^-5	0.862	INTRON CG6847
2L	20950971	2L_20950971_SNP [dm3] 2L_20950971_SNP [dm6]	A	G	6.579e^-5	0.862	INTERGENIC
3L	8021558	3L_8021558_SNP [dm3] 3L_8028458_SNP [dm6]	C	G	6.624e^-5	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
X	4107943	X_4107943_SNP [dm3] X_4213910_SNP [dm6]	A	T	6.629e^-5	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
2L	20996455	2L_20996455_SNP [dm3] 2L_20996455_SNP [dm6]	T	C	6.666e^-5	0.862	INTRON CG42238	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
X	17811011	X_17811011_SNP [dm3] X_17916978_SNP [dm6]	A	T	6.762e^-5	0.862	INTRON CG6847
2R	8655463	2R_8655463_SNP [dm3] 2R_12767958_SNP [dm6]	G	A	6.902e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	17416495	2L_17416495_SNP [dm3] 2L_17416495_SNP [dm6]	G	A	6.903e^-5	0.862	SYNONYMOUS_CODING Dif INTRON Dif
X	10385103	X_10385103_SNP [dm3] X_10491070_SNP [dm6]	T	C	6.947e^-5	0.862	SYNONYMOUS_CODING spri
2R	18994462	2R_18994462_SNP [dm3] 2R_23106939_SNP [dm6]	A	G	6.984e^-5	0.862	INTERGENIC
2R	13658246	2R_13658246_SNP [dm3] 2R_17770741_SNP [dm6]	A	G	6.984e^-5	0.862	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8021561	3L_8021561_SNP [dm3] 3L_8028461_SNP [dm6]	T	G	7.027e^-5	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
X	10742702	X_10742702_SNP [dm3] X_10848669_SNP [dm6]	A	T	7.040e^-5	0.862	UPSTREAM CG2202 DOWNSTREAM CG17333 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	12090362	3R_12090362_SNP [dm3] 3R_16264640_SNP [dm6]	C	A	7.081e^-5	0.862	SYNONYMOUS_CODING asun UPSTREAM bor	TF binding site mE1_TFBS_cad mE1_TFBS_inv mE1_TFBS_sens
2R	19611952	2R_19611952_SNP [dm3] 2R_23724429_SNP [dm6]	C	A	7.116e^-5	0.862	INTRON Sesn
2R	18869753	2R_18869753_SNP [dm3] 2R_22982230_SNP [dm6]	G	T	7.151e^-5	0.862	DOWNSTREAM CG32834 INTERGENIC
2R	18799880	2R_18799880_SNP [dm3] 2R_22912357_SNP [dm6]	A	C	7.197e^-5	0.862	INTRON nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	13657643	2R_13657643_SNP [dm3] 2R_17770138_SNP [dm6]	G	T	7.227e^-5	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	10591241	3R_10591241_SNP [dm3] 3R_14765519_SNP [dm6]	G	A	7.283e^-5	0.862	INTRON jvl
2R	6786623	2R_6786623_SNP [dm3] 2R_10899118_SNP [dm6]	G	A	7.288e^-5	0.862	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	9011554	3L_9011554_SNP [dm3] 3L_9018454_SNP [dm6]	T	A	7.396e^-5	0.862	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
3R	13858289	3R_13858289_SNP [dm3] 3R_18032567_SNP [dm6]	G	T	7.397e^-5	0.862	INTERGENIC
X	4107927	X_4107927_SNP [dm3] X_4213894_SNP [dm6]	G	T	7.415e^-5	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
2R	13365273	2R_13365273_INS [dm3] 2R_17477768_INS [dm6]	G	GTCC	7.429e^-5	0.862	UTR_3_PRIME CG43110 UPSTREAM veil	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3L	1263567	3L_1263567_DEL [dm3] 3L_1263567_DEL [dm6]	AA	A	7.470e^-5	0.862	INTRON CG9134
2R	20511974	2R_20511974_SNP [dm3] 2R_24624451_SNP [dm6]	A	T	7.653e^-5	0.862	INTRON CG13594	TF binding site mE1_TFBS_cad
X	3481076	X_3481076_SNP [dm3] X_3587043_SNP [dm6]	T	G	7.664e^-5	0.862	INTRON AstA-R1
2L	8267233	2L_8267233_SNP [dm3] 2L_8267233_SNP [dm6]	A	T	7.707e^-5	0.862	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	9732271	3L_9732271_SNP [dm3] 3L_9739171_SNP [dm6]	T	C	7.757e^-5	0.862	NON_SYNONYMOUS_CODING CG42268 UTR_5_PRIME CG42268	TF binding site mE1_TFBS_cad
3R	24598601	3R_24598601_SNP [dm3] 3R_28772879_SNP [dm6]	C	A	7.795e^-5	0.862	INTERGENIC
3L	9011269	3L_9011269_SNP [dm3] 3L_9018169_SNP [dm6]	A	G	7.824e^-5	0.862	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3R	25729815	3R_25729815_SNP [dm3] 3R_29904093_SNP [dm6]	T	G	7.827e^-5	0.862	UPSTREAM CG15517 DOWNSTREAM CG31038 INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
2R	12102244	2R_12102244_SNP [dm3] 2R_16214739_SNP [dm6]	G	A	7.868e^-5	0.862	INTRON mrj
3L	8020396	3L_8020396_SNP [dm3] 3L_8027296_SNP [dm6]	A	T	7.876e^-5	0.862	INTRON nmo	TF binding site mE1_TFBS_cad
2R	20148632	2R_20148632_SNP [dm3] 2R_24261109_SNP [dm6]	T	C	7.919e^-5	0.862	UPSTREAM CG3376 INTRON CG3376	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13962054	2R_13962054_SNP [dm3] 2R_18074549_SNP [dm6]	T	C	7.956e^-5	0.862	DOWNSTREAM CR45022 INTRON CG34386
2R	13652962	2R_13652962_SNP [dm3] 2R_17765457_SNP [dm6]	C	T	7.995e^-5	0.862	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	12195798	X_12195798_SNP [dm3] X_12301765_SNP [dm6]	G	T	8.037e^-5	0.862	INTRON Ten-a
3L	15246686	3L_15246686_SNP [dm3] 3L_15253586_SNP [dm6]	C	T	8.056e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	3881715	3L_3881715_SNP [dm3] 3L_3881715_SNP [dm6]	T	A	8.057e^-5	0.862	INTERGENIC
2R	18103745	2R_18103745_SNP [dm3] 2R_22216240_SNP [dm6]	G	T	8.076e^-5	0.862	INTRON ari-2
3L	18105944	3L_18105944_SNP [dm3] 3L_18112844_SNP [dm6]	A	T	8.108e^-5	0.862	UTR_3_PRIME mus304 UPSTREAM CG7341 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	8021011	3L_8021011_SNP [dm3] 3L_8027911_SNP [dm6]	T	G	8.124e^-5	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	3800564	3L_3800564_SNP [dm3] 3L_3800564_SNP [dm6]	A	G	8.182e^-5	0.862	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6372522	2L_6372522_SNP [dm3] 2L_6372522_SNP [dm6]	C	T	8.384e^-5	0.862	UTR_5_PRIME slam UPSTREAM slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
2L	19191325	2L_19191325_SNP [dm3] 2L_19191325_SNP [dm6]	C	T	8.386e^-5	0.862	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	14600846	2R_14600846_SNP [dm3] 2R_18713341_SNP [dm6]	C	T	8.445e^-5	0.862	INTERGENIC
3L	17842609	3L_17842609_SNP [dm3] 3L_17849509_SNP [dm6]	C	A	8.475e^-5	0.862	UTR_3_PRIME CG7430 UPSTREAM CG7441 DOWNSTREAM CG7430	TF binding site BDTNP1_TFBS_twi
3R	13946539	3R_13946539_SNP [dm3] 3R_18120817_SNP [dm6]	G	T	8.529e^-5	0.862	INTRON sr	TF binding site BDTNP1_TFBS_dl
3L	9019470	3L_9019470_SNP [dm3] 3L_9026370_SNP [dm6]	A	C	8.545e^-5	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	8332940	2R_8332940_DEL [dm3] 2R_12445435_DEL [dm6]	ACAGCAAAAGATGCCA...	A	8.548e^-5	0.862	INTRON Dyb	TF binding site mE1_TFBS_chinmo
2R	13032365	2R_13032365_SNP [dm3] 2R_17144860_SNP [dm6]	C	T	8.809e^-5	0.862	UPSTREAM tRNA:CR30234 & 2 others INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	13658081	2R_13658081_SNP [dm3] 2R_17770576_SNP [dm6]	G	T	8.871e^-5	0.862	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13908087	3L_13908087_SNP [dm3] 3L_13914987_SNP [dm6]	G	A	8.871e^-5	0.862	INTRON Rgl
2L	20924144	2L_20924144_SNP [dm3] 2L_20924144_SNP [dm6]	T	C	8.930e^-5	0.862	DOWNSTREAM RPA2 INTRON CR33318
2R	14600859	2R_14600859_SNP [dm3] 2R_18713354_SNP [dm6]	G	T	8.940e^-5	0.862	INTERGENIC
2L	3663693	2L_3663693_SNP [dm3] 2L_3663693_SNP [dm6]	G	A	8.995e^-5	0.862	INTRON CG34340
2R	18741664	2R_18741664_SNP [dm3] 2R_22854141_SNP [dm6]	G	C	9.088e^-5	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
2L	21050769	2L_21050769_SNP [dm3] 2L_21050769_SNP [dm6]	A	G	9.120e^-5	0.862	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	18799887	2R_18799887_SNP [dm3] 2R_22912364_SNP [dm6]	C	A	9.126e^-5	0.862	INTRON nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
3L	12475004	3L_12475004_SNP [dm3] 3L_12481904_SNP [dm6]	A	T	9.296e^-5	0.862	UPSTREAM CG33725 INTRON CG10663
2R	486267	2R_486267_SNP [dm3] 2R_4598762_SNP [dm6]	A	T	9.329e^-5	0.862	INTRON p120ctn	transposable element FlyBase
3L	4338057	3L_4338057_INS [dm3] 3L_4338057_INS [dm6]	T	TGGTTGAAGTGTAG...	9.354e^-5	0.862	INTRON Cip4
3R	11852707	3R_11852707_SNP [dm3] 3R_16026985_SNP [dm6]	A	T	9.372e^-5	0.862	INTRON pnr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr
X	4107875	X_4107875_SNP [dm3] X_4213842_SNP [dm6]	C	T	9.396e^-5	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3L	7375840	3L_7375840_SNP [dm3] 3L_7382740_SNP [dm6]	T	C	9.432e^-5	0.862	INTRON smid	TF binding site BDTNP1_TFBS_dl
X	17811057	X_17811057_SNP [dm3] X_17917024_SNP [dm6]	A	T	9.474e^-5	0.862	INTRON CG6847
X	12850902	X_12850902_SNP [dm3] X_12956869_SNP [dm6]	A	T	9.498e^-5	0.862	INTRON hec
2R	18875197	2R_18875197_SNP [dm3] 2R_22987674_SNP [dm6]	T	C	9.550e^-5	0.862	INTRON twi
3L	8951407	3L_8951407_SNP [dm3] 3L_8958307_SNP [dm6]	G	A	9.566e^-5	0.862	UPSTREAM CG13313 DOWNSTREAM mRpL12 INTERGENIC
3L	4914373	3L_4914373_SNP [dm3] 3L_4914373_SNP [dm6]	T	A	9.783e^-5	0.862	INTRON Rh50
2L	3200047	2L_3200047_SNP [dm3] 2L_3200047_SNP [dm6]	G	A	9.850e^-5	0.862	UPSTREAM CG34393 INTRON CG34393
2L	17153161	2L_17153161_SNP [dm3] 2L_17153161_SNP [dm6]	T	A	9.859e^-5	0.862	INTRON beat-IIIa & 1 other
3L	14254614	3L_14254614_INS [dm3] 3L_14261514_INS [dm6]	C	CC	9.887e^-5	0.862	INTERGENIC
2R	16907076	2R_16907076_SNP [dm3] 2R_21019571_SNP [dm6]	C	T	9.934e^-5	0.862	NON_SYNONYMOUS_CODING RIC-3
2R	18875198	2R_18875198_SNP [dm3] 2R_22987675_SNP [dm6]	T	C	9.975e^-5	0.862	INTRON twi
2L	9598527	2L_9598527_SNP [dm3] 2L_9598527_SNP [dm6]	T	C	9.988e^-5	0.862	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	20225640	2R_20225640_DEL [dm3] 2R_24338117_DEL [dm6]	GAGTG	G	1.004e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	16010087	3R_16010087_SNP [dm3] 3R_20184365_SNP [dm6]	A	T	1.005e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	3049846	X_3049846_SNP [dm3] X_3155813_SNP [dm6]	T	C	1.007e^-4	0.862	INTRON N	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	17811060	X_17811060_SNP [dm3] X_17917027_SNP [dm6]	A	T	1.021e^-4	0.862	INTRON CG6847
2L	21050757	2L_21050757_DEL [dm3] 2L_21050757_DEL [dm6]	TTATAGAT	T	1.022e^-4	0.862	INTRON CG42238	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2R	15488938	2R_15488938_SNP [dm3] 2R_19601433_SNP [dm6]	A	C	1.025e^-4	0.862	INTRON sm
X	12195790	X_12195790_SNP [dm3] X_12301757_SNP [dm6]	A	G	1.037e^-4	0.862	INTRON Ten-a
2R	13564446	2R_13564446_SNP [dm3] 2R_17676941_SNP [dm6]	C	A	1.043e^-4	0.862	INTRON Sema-1b
3R	14705773	3R_14705773_SNP [dm3] 3R_18880051_SNP [dm6]	T	G	1.068e^-4	0.862	INTERGENIC
3L	2893813	3L_2893813_SNP [dm3] 3L_2893813_SNP [dm6]	T	C	1.078e^-4	0.862	INTERGENIC
X	10383894	X_10383894_SNP [dm3] X_10489861_SNP [dm6]	T	G	1.080e^-4	0.862	DOWNSTREAM spri INTERGENIC
2R	8307954	2R_8307954_INS [dm3] 2R_12420449_INS [dm6]	A	AGAAAC	1.089e^-4	0.862	DOWNSTREAM CG8834 INTRON CG8834	TF binding site mE1_TFBS_cad
3L	17848931	3L_17848931_SNP [dm3] 3L_17855831_SNP [dm6]	G	A	1.089e^-4	0.862	UPSTREAM CG5535 INTRON CG5535	TF binding site BDTNP1_TFBS_twi
3L	16448347	3L_16448347_SNP [dm3] 3L_16455247_SNP [dm6]	T	C	1.090e^-4	0.862	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16737497	2R_16737497_SNP [dm3] 2R_20849992_SNP [dm6]	G	A	1.095e^-4	0.862	UPSTREAM CG17999 DOWNSTREAM CG9993 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	13657853	2R_13657853_SNP [dm3] 2R_17770348_SNP [dm6]	G	T	1.098e^-4	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2R	8307942	2R_8307942_SNP [dm3] 2R_12420437_SNP [dm6]	A	T	1.098e^-4	0.862	DOWNSTREAM CG8834 INTRON CG8834
2L	10652576	2L_10652576_SNP [dm3] 2L_10652576_SNP [dm6]	C	G	1.102e^-4	0.862	SYNONYMOUS_CODING CG17098	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	5193200	3R_5193200_SNP [dm3] 3R_9367478_SNP [dm6]	C	T	1.121e^-4	0.862	SYNONYMOUS_CODING CG8129 DOWNSTREAM FER
3L	5966811	3L_5966811_SNP [dm3] 3L_5973711_SNP [dm6]	C	T	1.125e^-4	0.862	INTRON CG10479	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2R	16550813	2R_16550813_SNP [dm3] 2R_20663308_SNP [dm6]	G	A	1.125e^-4	0.862	SYNONYMOUS_CODING Fem-1 DOWNSTREAM CG13437	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	19959912	2R_19959912_SNP [dm3] 2R_24072389_SNP [dm6]	A	T	1.138e^-4	0.862	INTRON CG3209
3L	14229554	3L_14229554_SNP [dm3] 3L_14236454_SNP [dm6]	A	G	1.139e^-4	0.862	UPSTREAM CG7906 & 1 other INTERGENIC
2L	19923807	2L_19923807_SNP [dm3] 2L_19923807_SNP [dm6]	C	T	1.140e^-4	0.862	DOWNSTREAM CR43827 INTRON sick
2L	9640808	2L_9640808_SNP [dm3] 2L_9640808_SNP [dm6]	A	C	1.156e^-4	0.862	INTRON Apoltp
2R	15694218	2R_15694218_SNP [dm3] 2R_19806713_SNP [dm6]	C	T	1.159e^-4	0.862	INTERGENIC
3R	9870377	3R_9870377_SNP [dm3] 3R_14044655_SNP [dm6]	C	T	1.164e^-4	0.862	UPSTREAM tRNA:S2b:88A INTERGENIC
3R	2718997	3R_2718997_INS [dm3] 3R_6893275_INS [dm6]	A	AA	1.164e^-4	0.862	EXON CR45559	regulatory region FlyBase REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	4162676	2L_4162676_SNP [dm3] 2L_4162676_SNP [dm6]	T	G	1.165e^-4	0.862	INTERGENIC
2L	15347640	2L_15347640_SNP [dm3] 2L_15347640_SNP [dm6]	G	A	1.165e^-4	0.862	INTERGENIC
3R	16010039	3R_16010039_SNP [dm3] 3R_20184317_SNP [dm6]	T	G	1.172e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1649124	2L_1649124_INS [dm3] 2L_1649124_INS [dm6]	A	ACA	1.173e^-4	0.862	INTERGENIC
2R	20512061	2R_20512061_SNP [dm3] 2R_24624538_SNP [dm6]	C	T	1.177e^-4	0.862	SYNONYMOUS_CODING CG13594	TF binding site mE1_TFBS_cad
3L	4870499	3L_4870499_SNP [dm3] 3L_4870499_SNP [dm6]	C	T	1.177e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	23379665	3R_23379665_SNP [dm3] 3R_27553943_SNP [dm6]	T	A	1.177e^-4	0.862	INTRON Klp98A
3L	4870577	3L_4870577_SNP [dm3] 3L_4870577_SNP [dm6]	T	C	1.190e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
X	4198389	X_4198389_SNP [dm3] X_4304356_SNP [dm6]	A	T	1.190e^-4	0.862	INTERGENIC
2L	8168666	2L_8168666_SNP [dm3] 2L_8168666_SNP [dm6]	C	T	1.203e^-4	0.862	INTRON Piezo	TF binding site BDTNP1_TFBS_twi
2L	6172850	2L_6172850_SNP [dm3] 2L_6172850_SNP [dm6]	A	G	1.205e^-4	0.862	INTERGENIC
2L	3560696	2L_3560696_SNP [dm3] 2L_3560696_SNP [dm6]	T	C	1.206e^-4	0.862	INTERGENIC
2R	15546162	2R_15546162_SNP [dm3] 2R_19658657_SNP [dm6]	G	A	1.212e^-4	0.862	SPLICE_SITE_REGION CG15125 UPSTREAM CR44214 DOWNSTREAM CR44504 INTRON CG15125	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl
2L	9640877	2L_9640877_SNP [dm3] 2L_9640877_SNP [dm6]	G	A	1.240e^-4	0.862	INTRON Apoltp
3L	14474437	3L_14474437_SNP [dm3] 3L_14481337_SNP [dm6]	C	A	1.241e^-4	0.862	INTRON bbg
2R	16907083	2R_16907083_SNP [dm3] 2R_21019578_SNP [dm6]	A	T	1.241e^-4	0.862	SYNONYMOUS_CODING RIC-3
2R	13251119	2R_13251119_SNP [dm3] 2R_17363614_SNP [dm6]	T	C	1.241e^-4	0.862	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14142735	2R_14142735_SNP [dm3] 2R_18255230_SNP [dm6]	T	A	1.242e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9640841	2L_9640841_SNP [dm3] 2L_9640841_SNP [dm6]	G	C	1.247e^-4	0.862	INTRON Apoltp
2L	14401285	2L_14401285_SNP [dm3] 2L_14401285_SNP [dm6]	A	T	1.249e^-4	0.862	INTRON elB
2L	1351804	2L_1351804_SNP [dm3] 2L_1351804_SNP [dm6]	T	C	1.253e^-4	0.862	UTR_3_PRIME CG5556 DOWNSTREAM CG5556
2L	3663926	2L_3663926_SNP [dm3] 2L_3663926_SNP [dm6]	C	T	1.254e^-4	0.862	INTRON CG34340
2L	7679758	2L_7679758_SNP [dm3] 2L_7679758_SNP [dm6]	C	T	1.259e^-4	0.862	INTRON Myo28B1
3R	22871601	3R_22871601_SNP [dm3] 3R_27045879_SNP [dm6]	T	C	1.262e^-4	0.862	INTRON RYa-R
2L	2561004	2L_2561004_SNP [dm3] 2L_2561004_SNP [dm6]	T	C	1.265e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14723150	3L_14723150_SNP [dm3] 3L_14730050_SNP [dm6]	A	G	1.272e^-4	0.862	DOWNSTREAM CG13473 INTRON ome
3L	3894003	3L_3894003_SNP [dm3] 3L_3894003_SNP [dm6]	C	T	1.280e^-4	0.862	SYNONYMOUS_CODING Fie UPSTREAM snRNA:U11 DOWNSTREAM Gr63a
2R	16577238	2R_16577238_SNP [dm3] 2R_20689733_SNP [dm6]	G	T	1.281e^-4	0.862	INTERGENIC
3L	17798400	3L_17798400_SNP [dm3] 3L_17805300_SNP [dm6]	G	A	1.283e^-4	0.862	SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	19415292	X_19415292_SNP [dm3] X_19521259_SNP [dm6]	A	G	1.284e^-4	0.862	UPSTREAM CoRest INTRON l_1_G0156	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
X	20423375	X_20423375_SNP [dm3] X_20552348_SNP [dm6]	G	A	1.288e^-4	0.862	INTRON RunxB
3L	9011255	3L_9011255_SNP [dm3] 3L_9018155_SNP [dm6]	A	T	1.290e^-4	0.862	INTRON Doc2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	5496017	3L_5496017_SNP [dm3] 3L_5502917_SNP [dm6]	C	G	1.290e^-4	0.862	DOWNSTREAM CG34342 INTERGENIC
2R	17155428	2R_17155428_SNP [dm3] 2R_21267923_SNP [dm6]	G	A	1.320e^-4	0.862	UPSTREAM CG30393 INTRON Rgk3
3R	25894386	3R_25894386_SNP [dm3] 3R_30068664_SNP [dm6]	A	C	1.329e^-4	0.862	INTRON sima
2R	14489628	2R_14489628_SNP [dm3] 2R_18602123_SNP [dm6]	G	A	1.331e^-4	0.862	INTRON GEFmeso
2L	21324621	2L_21324621_SNP [dm3] 2L_21324621_SNP [dm6]	T	C	1.332e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8288253	2R_8288253_SNP [dm3] 2R_12400748_SNP [dm6]	C	T	1.332e^-4	0.862	INTERGENIC
2L	7743044	2L_7743044_SNP [dm3] 2L_7743044_SNP [dm6]	T	C	1.333e^-4	0.862	DOWNSTREAM CG7214 INTERGENIC
2L	20921611	2L_20921611_SNP [dm3] 2L_20921611_SNP [dm6]	G	A	1.342e^-4	0.862	SYNONYMOUS_CODING Mtp	TF binding site mE1_TFBS_sens
3L	5486176	3L_5486176_SNP [dm3] 3L_5493076_SNP [dm6]	T	G	1.349e^-4	0.862	DOWNSTREAM CR44520 INTERGENIC
2L	3276060	2L_3276060_SNP [dm3] 2L_3276060_SNP [dm6]	C	T	1.352e^-4	0.862	SYNONYMOUS_CODING CG3332	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4107931	X_4107931_SNP [dm3] X_4213898_SNP [dm6]	A	G	1.355e^-4	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3L	14723151	3L_14723151_SNP [dm3] 3L_14730051_SNP [dm6]	T	C	1.356e^-4	0.862	DOWNSTREAM CG13473 INTRON ome
2R	11633586	2R_11633586_SNP [dm3] 2R_15746081_SNP [dm6]	A	G	1.360e^-4	0.862	INTRON CG30089	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	16998241	3R_16998241_SNP [dm3] 3R_21172519_SNP [dm6]	C	G	1.370e^-4	0.862	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11148905	3L_11148905_INS [dm3] 3L_11155805_INS [dm6]	G	GG	1.384e^-4	0.862	INTRON CG32082
2R	13267934	2R_13267934_SNP [dm3] 2R_17380429_SNP [dm6]	G	T	1.391e^-4	0.862	INTERGENIC
2L	8391257	2L_8391257_SNP [dm3] 2L_8391257_SNP [dm6]	G	T	1.394e^-4	0.862	INTRON CG42820
2R	12671735	2R_12671735_SNP [dm3] 2R_16784230_SNP [dm6]	T	G	1.397e^-4	0.862	INTRON CG5522	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	15991352	2L_15991352_SNP [dm3] 2L_15991352_SNP [dm6]	G	A	1.406e^-4	0.862	INTERGENIC
3L	17835677	3L_17835677_SNP [dm3] 3L_17842577_SNP [dm6]	T	G	1.417e^-4	0.862	INTRON CG5567 EXON CR45175
2L	8168639	2L_8168639_SNP [dm3] 2L_8168639_SNP [dm6]	A	T	1.426e^-4	0.862	INTRON Piezo	TF binding site BDTNP1_TFBS_twi
2R	18746029	2R_18746029_SNP [dm3] 2R_22858506_SNP [dm6]	G	A	1.429e^-4	0.862	INTRON inaD
2R	17415061	2R_17415061_SNP [dm3] 2R_21527556_SNP [dm6]	T	A	1.430e^-4	0.862	INTRON Egfr	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	3480541	X_3480541_SNP [dm3] X_3586508_SNP [dm6]	T	G	1.431e^-4	0.862	INTRON AstA-R1
3R	15189633	3R_15189633_SNP [dm3] 3R_19363911_SNP [dm6]	T	G	1.436e^-4	0.862	INTERGENIC
2R	18799660	2R_18799660_SNP [dm3] 2R_22912137_SNP [dm6]	G	A	1.437e^-4	0.862	SYNONYMOUS_CODING nahoda	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 mE1_TFBS_disco mE1_TFBS_HSA
2R	16914457	2R_16914457_SNP [dm3] 2R_21026952_SNP [dm6]	A	G	1.439e^-4	0.862	DOWNSTREAM CG9350 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14248753	3L_14248753_SNP [dm3] 3L_14255653_SNP [dm6]	T	A	1.447e^-4	0.862	INTERGENIC
2R	14581267	2R_14581267_SNP [dm3] 2R_18693762_SNP [dm6]	T	G	1.447e^-4	0.862	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	9598572	2L_9598572_SNP [dm3] 2L_9598572_SNP [dm6]	C	A	1.456e^-4	0.862	DOWNSTREAM CG4382 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi
2L	6172940	2L_6172940_INS [dm3] 2L_6172940_INS [dm6]	A	ACACA	1.460e^-4	0.862	INTERGENIC
3R	14053628	3R_14053628_SNP [dm3] 3R_18227906_SNP [dm6]	G	A	1.469e^-4	0.862	SPLICE_SITE_REGION Mdh2 INTRON Mdh2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9816702	2L_9816702_SNP [dm3] 2L_9816702_SNP [dm6]	T	A	1.469e^-4	0.862	INTRON nAChRalpha6
2L	3560598	2L_3560598_SNP [dm3] 2L_3560598_SNP [dm6]	T	A	1.477e^-4	0.862	INTERGENIC
2R	19224099	2R_19224099_SNP [dm3] 2R_23336576_SNP [dm6]	G	A	1.482e^-4	0.862	INTERGENIC
2R	14489457	2R_14489457_SNP [dm3] 2R_18601952_SNP [dm6]	G	C	1.514e^-4	0.862	INTRON GEFmeso
3L	3479787	3L_3479787_SNP [dm3] 3L_3479787_SNP [dm6]	A	C	1.517e^-4	0.862	INTRON CG42324
2L	5686918	2L_5686918_SNP [dm3] 2L_5686918_SNP [dm6]	A	T	1.525e^-4	0.862	INTERGENIC
3L	6922289	3L_6922289_SNP [dm3] 3L_6929189_SNP [dm6]	G	T	1.561e^-4	0.862	INTERGENIC
3L	9021813	3L_9021813_SNP [dm3] 3L_9028713_SNP [dm6]	T	C	1.568e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad
2L	3221726	2L_3221726_DEL [dm3] 2L_3221726_DEL [dm6]	TT	T	1.570e^-4	0.862	INTERGENIC
2L	3222290	2L_3222290_DEL [dm3] 2L_3222290_DEL [dm6]	AAT	G	1.571e^-4	0.862	INTERGENIC
3L	13690492	3L_13690492_SNP [dm3] 3L_13697392_SNP [dm6]	G	C	1.577e^-4	0.862	INTRON bru-3
3L	14223002	3L_14223002_SNP [dm3] 3L_14229902_SNP [dm6]	G	A	1.581e^-4	0.862	UTR_5_PRIME nuf INTRON nuf
2L	20709019	2L_20709019_SNP [dm3] 2L_20709019_SNP [dm6]	T	A	1.600e^-4	0.862	INTRON Hr38
2R	8295548	2R_8295548_SNP [dm3] 2R_12408043_SNP [dm6]	A	G	1.605e^-4	0.862	UPSTREAM CG30050 DOWNSTREAM Cpr49Af INTRON Cpr49Ag
3L	17671510	3L_17671510_SNP [dm3] 3L_17678410_SNP [dm6]	G	T	1.606e^-4	0.862	INTRON CG34251
2L	1265022	2L_1265022_SNP [dm3] 2L_1265022_SNP [dm6]	C	T	1.606e^-4	0.862	INTRON robo3
3L	16448337	3L_16448337_SNP [dm3] 3L_16455237_SNP [dm6]	G	A	1.624e^-4	0.862	INTRON CG33158	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	4623735	X_4623735_SNP [dm3] X_4729702_SNP [dm6]	G	A	1.636e^-4	0.862	DOWNSTREAM Proc-R INTERGENIC
X	19713788	X_19713788_SNP [dm3] X_19819755_SNP [dm6]	G	A	1.636e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	3479790	3L_3479790_SNP [dm3] 3L_3479790_SNP [dm6]	G	A	1.637e^-4	0.862	INTRON CG42324
2L	19118634	2L_19118634_SNP [dm3] 2L_19118634_SNP [dm6]	C	G	1.640e^-4	0.862	INTRON Ddc	regulatory region REDfly_CRMs
3R	14202155	3R_14202155_SNP [dm3] 3R_18376433_SNP [dm6]	C	T	1.650e^-4	0.862	EXON CR44946
3R	1701313	3R_1701313_SNP [dm3] 3R_5875591_SNP [dm6]	C	T	1.672e^-4	0.862	INTRON CG34113
2L	6372563	2L_6372563_SNP [dm3] 2L_6372563_SNP [dm6]	C	T	1.678e^-4	0.862	UTR_5_PRIME slam UPSTREAM slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_twi mE1_TFBS_cad
3L	14229566	3L_14229566_SNP [dm3] 3L_14236466_SNP [dm6]	T	C	1.679e^-4	0.862	UPSTREAM CG7906 & 1 other INTERGENIC
2R	12399017	2R_12399017_SNP [dm3] 2R_16511512_SNP [dm6]	G	A	1.687e^-4	0.862	INTRON Sema-2a
2R	8307769	2R_8307769_SNP [dm3] 2R_12420264_SNP [dm6]	A	T	1.693e^-4	0.862	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2L	6372634	2L_6372634_INS [dm3] 2L_6372634_INS [dm6]	A	AA	1.693e^-4	0.862	UPSTREAM slam INTRON slam	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad
3R	14705607	3R_14705607_SNP [dm3] 3R_18879885_SNP [dm6]	G	T	1.694e^-4	0.862	INTERGENIC
X	8533203	X_8533203_SNP [dm3] X_8639170_SNP [dm6]	G	T	1.696e^-4	0.862	INTRON oc	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
2R	14596395	2R_14596395_SNP [dm3] 2R_18708890_SNP [dm6]	C	G	1.699e^-4	0.862	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
2L	3985726	2L_3985726_SNP [dm3] 2L_3985726_SNP [dm6]	C	T	1.703e^-4	0.862	INTRON fred
2L	3560692	2L_3560692_SNP [dm3] 2L_3560692_SNP [dm6]	C	T	1.706e^-4	0.862	INTERGENIC
2R	8307675	2R_8307675_SNP [dm3] 2R_12420170_SNP [dm6]	A	T	1.721e^-4	0.862	UPSTREAM CG42782 DOWNSTREAM CG8834 INTRON CG8834
2R	9673385	2R_9673385_DEL [dm3] 2R_13785880_DEL [dm6]	CAC	C	1.723e^-4	0.862	INTRON Cpr50Ca
3L	2002213	3L_2002213_SNP [dm3] 3L_2002213_SNP [dm6]	A	G	1.725e^-4	0.862	DOWNSTREAM CG42841 INTERGENIC
X	5486621	X_5486621_SNP [dm3] X_5592588_SNP [dm6]	G	T	1.732e^-4	0.862	INTERGENIC
3L	12709797	3L_12709797_SNP [dm3] 3L_12716697_SNP [dm6]	T	C	1.747e^-4	0.862	INTERGENIC
3L	8022614	3L_8022614_SNP [dm3] 3L_8029514_SNP [dm6]	T	C	1.751e^-4	0.862	UPSTREAM tRNA:CR32370 INTRON nmo	regulatory region REDfly_CRMs
2R	12140885	2R_12140885_SNP [dm3] 2R_16253380_SNP [dm6]	C	T	1.751e^-4	0.862	INTRON CngA
3L	10471643	3L_10471643_SNP [dm3] 3L_10478543_SNP [dm6]	C	T	1.760e^-4	0.862	INTERGENIC
3R	17655038	3R_17655038_SNP [dm3] 3R_21829316_SNP [dm6]	T	C	1.760e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	4773377	2L_4773377_SNP [dm3] 2L_4773377_SNP [dm6]	T	A	1.761e^-4	0.862	INTRON CG15630
3R	14705611	3R_14705611_SNP [dm3] 3R_18879889_SNP [dm6]	C	A	1.763e^-4	0.862	INTERGENIC
2L	13327323	2L_13327323_SNP [dm3] 2L_13327323_SNP [dm6]	T	C	1.763e^-4	0.862	INTRON CG43778
3L	4870610	3L_4870610_SNP [dm3] 3L_4870610_SNP [dm6]	A	T	1.764e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
3L	10471710	3L_10471710_SNP [dm3] 3L_10478610_SNP [dm6]	C	T	1.778e^-4	0.862	INTERGENIC
3L	18973753	3L_18973753_SNP [dm3] 3L_18980653_SNP [dm6]	G	A	1.783e^-4	0.862	INTERGENIC
2L	3560604	2L_3560604_SNP [dm3] 2L_3560604_SNP [dm6]	T	A	1.786e^-4	0.862	INTERGENIC
3L	5514802	3L_5514802_SNP [dm3] 3L_5521702_SNP [dm6]	G	A	1.787e^-4	0.862	INTRON Lkr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10473226	3L_10473226_SNP [dm3] 3L_10480126_SNP [dm6]	A	G	1.790e^-4	0.862	INTERGENIC
X	16004072	X_16004072_SNP [dm3] X_16110039_SNP [dm6]	A	G	1.793e^-4	0.862	INTERGENIC
2R	7039119	2R_7039119_SNP [dm3] 2R_11151614_SNP [dm6]	T	A	1.794e^-4	0.862	INTRON CG13229
3R	11356569	3R_11356569_SNP [dm3] 3R_15530847_SNP [dm6]	A	G	1.795e^-4	0.862	INTRON CG31296
2L	8981216	2L_8981216_SNP [dm3] 2L_8981216_SNP [dm6]	T	C	1.818e^-4	0.862	SYNONYMOUS_CODING CG18662 INTRON CG13101
2R	13994186	2R_13994186_SNP [dm3] 2R_18106681_SNP [dm6]	G	C	1.836e^-4	0.862	INTRON CG5756
2R	6528190	2R_6528190_SNP [dm3] 2R_10640685_SNP [dm6]	A	C	1.839e^-4	0.862	NON_SYNONYMOUS_CODING CG11883 UTR_3_PRIME CG11883
X	14822209	X_14822209_SNP [dm3] X_14928176_SNP [dm6]	C	A	1.847e^-4	0.862	NON_SYNONYMOUS_CODING CG32591 INTRON Flo2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17665502	2R_17665502_SNP [dm3] 2R_21777997_SNP [dm6]	G	A	1.854e^-4	0.862	INTERGENIC
2R	1383476	2R_1383476_SNP [dm3] 2R_5495971_SNP [dm6]	G	A	1.856e^-4	0.862	UPSTREAM CG30438 & 1 other INTERGENIC
2L	8168664	2L_8168664_SNP [dm3] 2L_8168664_SNP [dm6]	T	C	1.863e^-4	0.862	INTRON Piezo	TF binding site BDTNP1_TFBS_twi
2R	17154931	2R_17154931_SNP [dm3] 2R_21267426_SNP [dm6]	C	A	1.864e^-4	0.862	SYNONYMOUS_CODING CG30393 INTRON Rgk3	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19779830	2R_19779830_SNP [dm3] 2R_23892307_SNP [dm6]	T	C	1.868e^-4	0.862	SYNONYMOUS_CODING DNA-ligI DOWNSTREAM Upf3
2R	13940021	2R_13940021_SNP [dm3] 2R_18052516_SNP [dm6]	T	G	1.871e^-4	0.862	UPSTREAM Muc55B DOWNSTREAM CG10911 INTERGENIC
2R	19719317	2R_19719317_SNP [dm3] 2R_23831794_SNP [dm6]	G	T	1.875e^-4	0.862	INTRON CG5549
X	12195828	X_12195828_SNP [dm3] X_12301795_SNP [dm6]	C	A	1.878e^-4	0.862	INTRON Ten-a
2L	19194238	2L_19194238_SNP [dm3] 2L_19194238_SNP [dm6]	A	T	1.878e^-4	0.862	INTRON drl	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	12133033	2R_12133033_SNP [dm3] 2R_16245528_SNP [dm6]	A	C	1.883e^-4	0.862	INTRON CngA
2L	15596631	2L_15596631_SNP [dm3] 2L_15596631_SNP [dm6]	C	A	1.885e^-4	0.862	INTERGENIC
2R	14581204	2R_14581204_SNP [dm3] 2R_18693699_SNP [dm6]	C	T	1.887e^-4	0.862	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	1399256	2L_1399256_SNP [dm3] 2L_1399256_SNP [dm6]	T	G	1.896e^-4	0.862	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	3481067	X_3481067_INS [dm3] X_3587034_INS [dm6]	T	TCA	1.897e^-4	0.862	INTRON AstA-R1
2R	13763710	2R_13763710_SNP [dm3] 2R_17876205_SNP [dm6]	C	T	1.897e^-4	0.862	INTRON Elk
3R	13656566	3R_13656566_SNP [dm3] 3R_17830844_SNP [dm6]	T	C	1.904e^-4	0.862	INTRON tinc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	22283733	3R_22283733_INS [dm3] 3R_26458011_INS [dm6]	T	TA	1.909e^-4	0.862	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
2R	20227878	2R_20227878_SNP [dm3] 2R_24340355_SNP [dm6]	A	G	1.911e^-4	0.862	INTERGENIC
3L	1006638	3L_1006638_SNP [dm3] 3L_1006638_SNP [dm6]	C	T	1.914e^-4	0.862	INTRON trio
2R	6673485	2R_6673485_SNP [dm3] 2R_10785980_SNP [dm6]	C	T	1.917e^-4	0.862	DOWNSTREAM CR44301 & 1 other INTRON CG33144 EXON CR44300
3R	14705814	3R_14705814_SNP [dm3] 3R_18880092_SNP [dm6]	C	G	1.917e^-4	0.862	INTERGENIC
3L	5310368	3L_5310368_SNP [dm3] 3L_5317268_SNP [dm6]	A	G	1.925e^-4	0.862	UPSTREAM CR45741 INTERGENIC
2L	4008260	2L_4008260_SNP [dm3] 2L_4008260_SNP [dm6]	T	G	1.935e^-4	0.862	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
2L	2394209	2L_2394209_SNP [dm3] 2L_2394209_SNP [dm6]	C	T	1.938e^-4	0.862	INTRON VGlut
2L	7742908	2L_7742908_SNP [dm3] 2L_7742908_SNP [dm6]	A	G	1.940e^-4	0.862	DOWNSTREAM CG7214 INTERGENIC
2L	8267234	2L_8267234_SNP [dm3] 2L_8267234_SNP [dm6]	C	A	1.943e^-4	0.862	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	20694629	2L_20694629_SNP [dm3] 2L_20694629_SNP [dm6]	A	C	1.946e^-4	0.862	INTRON Hr38
2R	1014199	2R_1014199_DEL [dm3] 2R_5126694_DEL [dm6]	ATCTCTAGAGCCA...	A	1.947e^-4	0.862	UPSTREAM CR43256 INTRON gus	transposable element FlyBase
2L	4187506	2L_4187506_SNP [dm3] 2L_4187506_SNP [dm6]	C	G	1.954e^-4	0.862	UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	1399257	2L_1399257_SNP [dm3] 2L_1399257_SNP [dm6]	G	A	1.956e^-4	0.862	INTRON lea	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3L	17670908	3L_17670908_SNP [dm3] 3L_17677808_SNP [dm6]	C	T	1.960e^-4	0.862	INTRON CG34251
3L	6013631	3L_6013631_SNP [dm3] 3L_6020531_SNP [dm6]	A	T	1.975e^-4	0.862	INTRON PVRAP
2L	3222310	2L_3222310_SNP [dm3] 2L_3222310_SNP [dm6]	G	T	1.976e^-4	0.862	INTERGENIC
2L	18760566	2L_18760566_SNP [dm3] 2L_18760566_SNP [dm6]	G	A	1.989e^-4	0.862	INTERGENIC
X	8510467	X_8510467_SNP [dm3] X_8616434_SNP [dm6]	C	T	1.990e^-4	0.862	INTERGENIC
2R	13658192	2R_13658192_SNP [dm3] 2R_17770687_SNP [dm6]	C	T	1.991e^-4	0.862	SYNONYMOUS_CODING CG6362 UPSTREAM CG18635	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	9510401	2R_9510401_INS [dm3] 2R_13622896_INS [dm6]	C	CACC	2.003e^-4	0.862	UPSTREAM fas INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	17669891	3L_17669891_SNP [dm3] 3L_17676791_SNP [dm6]	G	A	2.011e^-4	0.862	INTRON CG34251
2R	17155724	2R_17155724_SNP [dm3] 2R_21268219_SNP [dm6]	T	C	2.012e^-4	0.862	UPSTREAM CG30393 INTRON Rgk3
3L	6019023	3L_6019023_SNP [dm3] 3L_6025923_SNP [dm6]	C	A	2.014e^-4	0.862	UTR_3_PRIME PVRAP
2L	6177066	2L_6177066_SNP [dm3] 2L_6177066_SNP [dm6]	C	A	2.020e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	11439650	2R_11439650_SNP [dm3] 2R_15552145_SNP [dm6]	G	A	2.021e^-4	0.862	INTERGENIC
3L	17823370	3L_17823370_SNP [dm3] 3L_17830270_SNP [dm6]	A	C	2.023e^-4	0.862	INTRON Grd
3L	8023738	3L_8023738_SNP [dm3] 3L_8030638_SNP [dm6]	A	C	2.023e^-4	0.862	INTRON nmo
2R	6925774	2R_6925774_SNP [dm3] 2R_11038269_SNP [dm6]	C	T	2.027e^-4	0.862	INTRON luna	TF binding site mE1_TFBS_sbb
2L	12632430	2L_12632430_SNP [dm3] 2L_12632430_SNP [dm6]	A	G	2.028e^-4	0.862	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4338048	3L_4338048_SNP [dm3] 3L_4338048_SNP [dm6]	C	A	2.030e^-4	0.862	INTRON Cip4
X	7905487	X_7905487_SNP [dm3] X_8011454_SNP [dm6]	T	C	2.030e^-4	0.862	INTRON Tbh
2R	15710601	2R_15710601_SNP [dm3] 2R_19823096_SNP [dm6]	C	A	2.035e^-4	0.862	INTERGENIC
3L	1121474	3L_1121474_SNP [dm3] 3L_1121474_SNP [dm6]	T	C	2.035e^-4	0.862	INTERGENIC
3L	3909432	3L_3909432_SNP [dm3] 3L_3909432_SNP [dm6]	G	C	2.035e^-4	0.862	START_GAINED mge UTR_5_PRIME mge DOWNSTREAM Eip63F-1 INTRON mge	TF binding site mE1_TFBS_HSA
2L	17015515	2L_17015515_SNP [dm3] 2L_17015515_SNP [dm6]	T	G	2.040e^-4	0.862	UPSTREAM CG6304 INTERGENIC	TF binding site mE1_TFBS_inv
2R	7971841	2R_7971841_SNP [dm3] 2R_12084336_SNP [dm6]	C	A	2.041e^-4	0.862	DOWNSTREAM jeb INTERGENIC
3R	17329310	3R_17329310_SNP [dm3] 3R_21503588_SNP [dm6]	A	T	2.042e^-4	0.862	INTRON C15	TF binding site mE1_TFBS_chinmo
3L	4970773	3L_4970773_SNP [dm3] 3L_4970773_SNP [dm6]	T	C	2.043e^-4	0.862	INTRON Con	TF binding site BDTNP1_TFBS_dl
3L	11119466	3L_11119466_SNP [dm3] 3L_11126366_SNP [dm6]	G	A	2.044e^-4	0.862	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5486836	3L_5486836_SNP [dm3] 3L_5493736_SNP [dm6]	A	G	2.045e^-4	0.862	EXON CR44520
3L	11137048	3L_11137048_SNP [dm3] 3L_11143948_SNP [dm6]	T	G	2.058e^-4	0.862	INTRON CG32082
2R	7039114	2R_7039114_SNP [dm3] 2R_11151609_SNP [dm6]	C	G	2.067e^-4	0.862	INTRON CG13229
X	19713624	X_19713624_SNP [dm3] X_19819591_SNP [dm6]	G	A	2.071e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2485594	2L_2485594_SNP [dm3] 2L_2485594_SNP [dm6]	C	G	2.079e^-4	0.862	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3L	9252457	3L_9252457_SNP [dm3] 3L_9259357_SNP [dm6]	A	C	2.079e^-4	0.862	INTRON GluRIB	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	1121369	3L_1121369_SNP [dm3] 3L_1121369_SNP [dm6]	C	A	2.082e^-4	0.862	INTERGENIC
2R	19719335	2R_19719335_DEL [dm3] 2R_23831812_DEL [dm6]	TGTAGGAAT	T	2.088e^-4	0.862	INTRON CG5549
2R	19719347	2R_19719347_SNP [dm3] 2R_23831824_SNP [dm6]	T	A	2.088e^-4	0.862	INTRON CG5549
X	20430162	X_20430162_SNP [dm3] X_20559135_SNP [dm6]	G	T	2.091e^-4	0.862	INTRON RunxB
3L	14792446	3L_14792446_SNP [dm3] 3L_14799346_SNP [dm6]	A	G	2.091e^-4	0.862	UTR_3_PRIME CG9425
3L	9012071	3L_9012071_SNP [dm3] 3L_9018971_SNP [dm6]	C	G	2.092e^-4	0.862	UTR_5_PRIME Doc2	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	17839967	3R_17839967_SNP [dm3] 3R_22014245_SNP [dm6]	A	G	2.093e^-4	0.862	UTR_3_PRIME Eip93F UPSTREAM CG6332
3R	11014227	3R_11014227_SNP [dm3] 3R_15188505_SNP [dm6]	T	G	2.104e^-4	0.862	SYNONYMOUS_CODING Gyc88E	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	2551434	3L_2551434_SNP [dm3] 3L_2551434_SNP [dm6]	C	T	2.106e^-4	0.862	INTRON Spn
3L	17798357	3L_17798357_SNP [dm3] 3L_17805257_SNP [dm6]	C	T	2.111e^-4	0.862	NON_SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	16004106	X_16004106_SNP [dm3] X_16110073_SNP [dm6]	A	G	2.113e^-4	0.862	INTERGENIC
3L	17219700	3L_17219700_SNP [dm3] 3L_17226600_SNP [dm6]	A	G	2.122e^-4	0.862	INTRON Rbp6
2L	3222284	2L_3222284_SNP [dm3] 2L_3222284_SNP [dm6]	A	G	2.124e^-4	0.862	INTERGENIC
3R	12488897	3R_12488897_SNP [dm3] 3R_16663175_SNP [dm6]	A	C	2.126e^-4	0.862	INTRON Ubx	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	4108220	X_4108220_SNP [dm3] X_4214187_SNP [dm6]	T	C	2.129e^-4	0.862	DOWNSTREAM CG43288 INTERGENIC
2L	20391898	2L_20391898_SNP [dm3] 2L_20391898_SNP [dm6]	A	G	2.131e^-4	0.862	INTRON CG10947
X	5970640	X_5970640_SNP [dm3] X_6076607_SNP [dm6]	C	T	2.135e^-4	0.862	SYNONYMOUS_CODING CG4666
2L	2729633	2L_2729633_SNP [dm3] 2L_2729633_SNP [dm6]	A	C	2.141e^-4	0.862	UPSTREAM CG31689 INTRON CG31689
3L	3862647	3L_3862647_SNP [dm3] 3L_3862647_SNP [dm6]	G	A	2.146e^-4	0.862	DOWNSTREAM Awh INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
3R	15961750	3R_15961750_SNP [dm3] 3R_20136028_SNP [dm6]	C	T	2.151e^-4	0.862	INTERGENIC
3L	17840796	3L_17840796_SNP [dm3] 3L_17847696_SNP [dm6]	C	T	2.154e^-4	0.862	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	7117881	2R_7117881_SNP [dm3] 2R_11230376_SNP [dm6]	T	C	2.155e^-4	0.862	INTRON metro	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	6293479	3L_6293479_SNP [dm3] 3L_6300379_SNP [dm6]	C	G	2.160e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	7919956	3L_7919956_SNP [dm3] 3L_7926856_SNP [dm6]	A	T	2.161e^-4	0.862	INTRON syd
2L	8866785	2L_8866785_SNP [dm3] 2L_8866785_SNP [dm6]	T	G	2.169e^-4	0.862	UTR_5_PRIME CG9483 DOWNSTREAM CG32983 EXON CR45260	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	7077373	3L_7077373_SNP [dm3] 3L_7084273_SNP [dm6]	G	C	2.171e^-4	0.862	INTERGENIC
3L	14575041	3L_14575041_SNP [dm3] 3L_14581941_SNP [dm6]	T	G	2.176e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	14716069	2R_14716069_SNP [dm3] 2R_18828564_SNP [dm6]	C	G	2.189e^-4	0.862	INTRON CG15097
3L	8021053	3L_8021053_SNP [dm3] 3L_8027953_SNP [dm6]	G	A	2.193e^-4	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7544097	2L_7544097_INS [dm3] 2L_7544097_INS [dm6]	G	GATG	2.198e^-4	0.862	UTR_5_PRIME RapGAP1 INTRON RapGAP1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
3R	22156056	3R_22156056_DEL [dm3] 3R_26330334_DEL [dm6]	TT	T	2.203e^-4	0.862	INTRON CG33970
2R	14703801	2R_14703801_SNP [dm3] 2R_18816296_SNP [dm6]	G	A	2.216e^-4	0.862	UTR_5_PRIME CG15096 DOWNSTREAM CR43418
2R	12455627	2R_12455627_SNP [dm3] 2R_16568122_SNP [dm6]	G	A	2.220e^-4	0.862	SYNONYMOUS_CODING CG4945	TF binding site mE1_TFBS_cad
X	14058222	X_14058222_SNP [dm3] X_14164189_SNP [dm6]	A	T	2.225e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_cnc
3L	14553033	3L_14553033_SNP [dm3] 3L_14559933_SNP [dm6]	C	T	2.228e^-4	0.862	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	1042628	2R_1042628_SNP [dm3] 2R_5155123_SNP [dm6]	T	C	2.232e^-4	0.862	DOWNSTREAM Atf6 INTERGENIC
2R	14095785	2R_14095785_SNP [dm3] 2R_18208280_SNP [dm6]	T	A	2.250e^-4	0.862	UTR_3_PRIME CG30114
2R	5401020	2R_5401020_SNP [dm3] 2R_9513515_SNP [dm6]	A	G	2.255e^-4	0.862	INTRON brp
2L	1199449	2L_1199449_SNP [dm3] 2L_1199449_SNP [dm6]	C	T	2.257e^-4	0.862	UTR_5_PRIME CG43348 UPSTREAM CG43349 & 1 other
2L	6215640	2L_6215640_SNP [dm3] 2L_6215640_SNP [dm6]	G	C	2.261e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	13946852	3R_13946852_SNP [dm3] 3R_18121130_SNP [dm6]	G	A	2.265e^-4	0.862	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	17263348	3L_17263348_SNP [dm3] 3L_17270248_SNP [dm6]	T	C	2.268e^-4	0.862	INTERGENIC
3L	10480059	3L_10480059_SNP [dm3] 3L_10486959_SNP [dm6]	T	G	2.275e^-4	0.862	INTRON A2bp1
3L	10480060	3L_10480060_SNP [dm3] 3L_10486960_SNP [dm6]	T	A	2.275e^-4	0.862	INTRON A2bp1
2L	12088206	2L_12088206_SNP [dm3] 2L_12088206_SNP [dm6]	A	C	2.282e^-4	0.862	DOWNSTREAM CR44593 INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	17811081	X_17811081_SNP [dm3] X_17917048_SNP [dm6]	T	A	2.297e^-4	0.862	INTRON CG6847
3L	12412130	3L_12412130_SNP [dm3] 3L_12419030_SNP [dm6]	T	G	2.307e^-4	0.862	INTERGENIC
2L	16477376	2L_16477376_SNP [dm3] 2L_16477376_SNP [dm6]	T	A	2.315e^-4	0.862	INTRON dac	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	996749	2L_996749_SNP [dm3] 2L_996749_SNP [dm6]	A	G	2.318e^-4	0.862	INTERGENIC
2L	12730674	2L_12730674_SNP [dm3] 2L_12730674_SNP [dm6]	A	C	2.331e^-4	0.862	INTRON MRP	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	10100245	2L_10100245_SNP [dm3] 2L_10100245_SNP [dm6]	G	A	2.331e^-4	0.862	INTRON CG34109 & 1 other
2R	14581212	2R_14581212_SNP [dm3] 2R_18693707_SNP [dm6]	T	G	2.333e^-4	0.862	INTRON Sik3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8019423	3L_8019423_SNP [dm3] 3L_8026323_SNP [dm6]	A	T	2.333e^-4	0.862	INTRON nmo
2R	15694191	2R_15694191_SNP [dm3] 2R_19806686_SNP [dm6]	A	G	2.334e^-4	0.862	INTERGENIC
3L	3902321	3L_3902321_DEL [dm3] 3L_3902321_DEL [dm6]	GTT	AA	2.336e^-4	0.862	UPSTREAM Ubi-p63E INTRON Ubi-p63E	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
2L	13117948	2L_13117948_SNP [dm3] 2L_13117948_SNP [dm6]	C	A	2.338e^-4	0.862	DOWNSTREAM CR44198 INTERGENIC
2R	12133022	2R_12133022_SNP [dm3] 2R_16245517_SNP [dm6]	T	G	2.346e^-4	0.862	INTRON CngA
2R	17865608	2R_17865608_SNP [dm3] 2R_21978103_SNP [dm6]	G	A	2.350e^-4	0.862	DOWNSTREAM Gr58b & 1 other INTERGENIC
3L	1263408	3L_1263408_SNP [dm3] 3L_1263408_SNP [dm6]	C	T	2.364e^-4	0.862	INTRON CG9134
3L	10480048	3L_10480048_DEL [dm3] 3L_10486948_DEL [dm6]	GGGGA	TCT	2.366e^-4	0.862	INTRON A2bp1
3R	10034403	3R_10034403_SNP [dm3] 3R_14208681_SNP [dm6]	C	T	2.366e^-4	0.862	INTRON Dop1R1
3L	4914341	3L_4914341_SNP [dm3] 3L_4914341_SNP [dm6]	A	G	2.375e^-4	0.862	INTRON Rh50
3L	10300552	3L_10300552_SNP [dm3] 3L_10307452_SNP [dm6]	A	T	2.375e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	4913736	3L_4913736_SNP [dm3] 3L_4913736_SNP [dm6]	A	T	2.377e^-4	0.862	SYNONYMOUS_CODING Rh50	TF binding site BDTNP1_TFBS_sna
3R	14053662	3R_14053662_SNP [dm3] 3R_18227940_SNP [dm6]	G	A	2.379e^-4	0.862	INTRON Mdh2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6987486	2R_6987486_SNP [dm3] 2R_11099981_SNP [dm6]	C	A	2.384e^-4	0.862	UTR_5_PRIME luna	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	18077546	2R_18077546_SNP [dm3] 2R_22190041_SNP [dm6]	C	T	2.399e^-4	0.862	UTR_3_PRIME Swim DOWNSTREAM Vps35	TF binding site mE1_TFBS_cad
2L	2485392	2L_2485392_SNP [dm3] 2L_2485392_SNP [dm6]	G	A	2.402e^-4	0.862	INTERGENIC	enhancer FlyBase regulatory region REDfly_CRMs
3R	16002436	3R_16002436_SNP [dm3] 3R_20176714_SNP [dm6]	C	A	2.403e^-4	0.862	INTERGENIC
3L	1067522	3L_1067522_SNP [dm3] 3L_1067522_SNP [dm6]	T	G	2.413e^-4	0.862	INTRON bab1
X	13305039	X_13305039_INS [dm3] X_13411006_INS [dm6]	G	GCTTACACATACTTGTACTC...	2.413e^-4	0.862	INTRON CG1998	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	4433855	3L_4433855_SNP [dm3] 3L_4433855_SNP [dm6]	C	T	2.421e^-4	0.862	SYNONYMOUS_CODING nAChRbeta1
3L	9025855	3L_9025855_SNP [dm3] 3L_9032755_SNP [dm6]	G	T	2.426e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
3R	16704860	3R_16704860_SNP [dm3] 3R_20879138_SNP [dm6]	T	G	2.429e^-4	0.862	DOWNSTREAM TotZ EXON CR44048
2L	4187502	2L_4187502_SNP [dm3] 2L_4187502_SNP [dm6]	A	G	2.433e^-4	0.862	UPSTREAM lectin-24Db INTRON CG31961	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	21146599	3R_21146599_SNP [dm3] 3R_25320877_SNP [dm6]	G	A	2.434e^-4	0.862	UPSTREAM CG10560 DOWNSTREAM CG10562 INTERGENIC
2L	4187492	2L_4187492_SNP [dm3] 2L_4187492_SNP [dm6]	G	A	2.434e^-4	0.862	UTR_5_PRIME CG31961 UPSTREAM lectin-24Db	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	2894737	2L_2894737_SNP [dm3] 2L_2894737_SNP [dm6]	T	G	2.445e^-4	0.862	INTRON lilli	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1178728	2L_1178728_SNP [dm3] 2L_1178728_SNP [dm6]	G	T	2.450e^-4	0.862	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6370935	2L_6370935_SNP [dm3] 2L_6370935_SNP [dm6]	C	T	2.455e^-4	0.862	DOWNSTREAM CG9505 INTERGENIC	TF binding site mE1_TFBS_chinmo
X	13653121	X_13653121_SNP [dm3] X_13759088_SNP [dm6]	T	G	2.457e^-4	0.862	UPSTREAM Yp3 DOWNSTREAM Rtc1 INTERGENIC
2L	14671854	2L_14671854_SNP [dm3] 2L_14671854_SNP [dm6]	C	A	2.457e^-4	0.862	INTRON osp
3L	6922272	3L_6922272_SNP [dm3] 3L_6929172_SNP [dm6]	A	G	2.458e^-4	0.862	INTERGENIC
2R	16017987	2R_16017987_SNP [dm3] 2R_20130482_SNP [dm6]	G	A	2.470e^-4	0.862	INTERGENIC
3R	5027369	3R_5027369_SNP [dm3] 3R_9201647_SNP [dm6]	A	G	2.478e^-4	0.862	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	18802710	2R_18802710_SNP [dm3] 2R_22915187_SNP [dm6]	G	T	2.481e^-4	0.862	INTRON nahoda
X	5173920	X_5173920_SNP [dm3] X_5279887_SNP [dm6]	A	G	2.482e^-4	0.862	INTERGENIC
3L	1263497	3L_1263497_SNP [dm3] 3L_1263497_SNP [dm6]	A	T	2.488e^-4	0.862	INTRON CG9134
2R	13742787	2R_13742787_SNP [dm3] 2R_17855282_SNP [dm6]	T	G	2.493e^-4	0.862	UTR_5_PRIME olf186-F DOWNSTREAM CG30323 INTRON olf186-F	TF binding site BDTNP1_TFBS_dl
2L	2602630	2L_2602630_SNP [dm3] 2L_2602630_SNP [dm6]	C	T	2.496e^-4	0.862	UPSTREAM CR44789 INTERGENIC
3R	25672989	3R_25672989_SNP [dm3] 3R_29847267_SNP [dm6]	T	C	2.499e^-4	0.862	INTRON Cad99C
2L	8267236	2L_8267236_SNP [dm3] 2L_8267236_SNP [dm6]	G	T	2.511e^-4	0.862	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
2L	8863577	2L_8863577_SNP [dm3] 2L_8863577_SNP [dm6]	G	T	2.514e^-4	0.862	NON_SYNONYMOUS_CODING CG32986 UPSTREAM CG32987 EXON CR45260	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12045566	3R_12045566_SNP [dm3] 3R_16219844_SNP [dm6]	C	T	2.520e^-4	0.862	INTERGENIC
3L	8843512	3L_8843512_SNP [dm3] 3L_8850412_SNP [dm6]	A	T	2.524e^-4	0.862	INTRON dally	TF binding site BDTNP1_TFBS_da
3L	17835682	3L_17835682_SNP [dm3] 3L_17842582_SNP [dm6]	T	A	2.532e^-4	0.862	INTRON CG5567 EXON CR45175
2R	18342896	2R_18342896_SNP [dm3] 2R_22455391_SNP [dm6]	C	T	2.536e^-4	0.862	UTR_5_PRIME CG10384
3L	16727162	3L_16727162_SNP [dm3] 3L_16734062_SNP [dm6]	A	T	2.545e^-4	0.862	INTRON CG9701
2L	11500430	2L_11500430_DEL [dm3] 2L_11500430_DEL [dm6]	ACAAA	A	2.545e^-4	0.862	INTERGENIC
3R	14705641	3R_14705641_SNP [dm3] 3R_18879919_SNP [dm6]	T	C	2.552e^-4	0.862	INTERGENIC
X	12845607	X_12845607_SNP [dm3] X_12951574_SNP [dm6]	T	C	2.557e^-4	0.862	SYNONYMOUS_CODING hec
2R	14596398	2R_14596398_SNP [dm3] 2R_18708893_SNP [dm6]	A	C	2.561e^-4	0.862	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
3L	11119467	3L_11119467_SNP [dm3] 3L_11126367_SNP [dm6]	A	G	2.565e^-4	0.862	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2R	13657713	2R_13657713_INS [dm3] 2R_17770208_INS [dm6]	A	ATGTA	2.566e^-4	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	22283697	3R_22283697_MNP [dm3] 3R_26457975_MNP [dm6]	TAT	CCC	2.566e^-4	0.862	UPSTREAM CG14238 DOWNSTREAM CG14237 INTERGENIC
3L	4551814	3L_4551814_SNP [dm3] 3L_4551814_SNP [dm6]	T	C	2.569e^-4	0.862	SYNONYMOUS_CODING CG11357	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21295609	3R_21295609_SNP [dm3] 3R_25469887_SNP [dm6]	T	G	2.578e^-4	0.862	INTRON Fur1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7528403	2R_7528403_SNP [dm3] 2R_11640898_SNP [dm6]	C	G	2.585e^-4	0.862	UTR_5_PRIME CG9005 DOWNSTREAM CG9003	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	11499025	2L_11499025_SNP [dm3] 2L_11499025_SNP [dm6]	C	T	2.589e^-4	0.862	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3L	14553230	3L_14553230_SNP [dm3] 3L_14560130_SNP [dm6]	G	A	2.591e^-4	0.862	DOWNSTREAM Lk INTRON CR44843 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	2460000	2L_2460000_SNP [dm3] 2L_2460000_SNP [dm6]	G	A	2.591e^-4	0.862	DOWNSTREAM dpp INTRON tRNA:Y1:22Fb	TF binding site BDTNP1_TFBS_dl
2R	8334507	2R_8334507_SNP [dm3] 2R_12447002_SNP [dm6]	G	A	2.595e^-4	0.862	INTRON Dyb
2L	20414816	2L_20414816_SNP [dm3] 2L_20414816_SNP [dm6]	A	T	2.597e^-4	0.862	UPSTREAM CG10947 DOWNSTREAM CG10949 INTERGENIC
X	20431454	X_20431454_INS [dm3] X_20560427_INS [dm6]	G	GGTATGTTTAG...	2.601e^-4	0.862	INTRON RunxB
2L	21029556	2L_21029556_SNP [dm3] 2L_21029556_SNP [dm6]	A	C	2.602e^-4	0.862	INTRON CG42238	TF binding site BDTNP1_TFBS_dl
3R	14705753	3R_14705753_SNP [dm3] 3R_18880031_SNP [dm6]	T	A	2.603e^-4	0.862	INTERGENIC
2R	10529848	2R_10529848_SNP [dm3] 2R_14642343_SNP [dm6]	T	A	2.612e^-4	0.862	INTERGENIC
2L	2561009	2L_2561009_SNP [dm3] 2L_2561009_SNP [dm6]	C	T	2.620e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10480054	3L_10480054_SNP [dm3] 3L_10486954_SNP [dm6]	T	A	2.642e^-4	0.862	INTRON A2bp1
3L	10480056	3L_10480056_SNP [dm3] 3L_10486956_SNP [dm6]	T	A	2.642e^-4	0.862	INTRON A2bp1
3L	17835669	3L_17835669_SNP [dm3] 3L_17842569_SNP [dm6]	A	G	2.643e^-4	0.862	INTRON CG5567 EXON CR45175
2R	17528268	2R_17528268_SNP [dm3] 2R_21640763_SNP [dm6]	G	C	2.647e^-4	0.862	INTERGENIC
2L	10130931	2L_10130931_SNP [dm3] 2L_10130931_SNP [dm6]	G	T	2.661e^-4	0.862	INTRON CG44153
2R	12455594	2R_12455594_SNP [dm3] 2R_16568089_SNP [dm6]	T	C	2.664e^-4	0.862	INTRON CG4945	TF binding site mE1_TFBS_cad
2R	16270548	2R_16270548_SNP [dm3] 2R_20383043_SNP [dm6]	G	A	2.668e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	3894768	3L_3894768_SNP [dm3] 3L_3894768_SNP [dm6]	A	G	2.672e^-4	0.862	UTR_3_PRIME Fie DOWNSTREAM Gr63a
2R	6043090	2R_6043090_SNP [dm3] 2R_10155585_SNP [dm6]	A	T	2.677e^-4	0.862	UPSTREAM KCNQ DOWNSTREAM mlt INTRON KCNQ
3L	4967935	3L_4967935_INS [dm3] 3L_4967935_INS [dm6]	C	GCTATACT	2.679e^-4	0.862	INTRON Con
2L	1874960	2L_1874960_SNP [dm3] 2L_1874960_SNP [dm6]	G	C	2.684e^-4	0.862	INTRON CG31663
3L	1334825	3L_1334825_DEL [dm3] 3L_1334825_DEL [dm6]	CC	C	2.694e^-4	0.862	UTR_5_PRIME CG2211 UPSTREAM l_3_02640 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl
3L	5395055	3L_5395055_SNP [dm3] 3L_5401955_SNP [dm6]	A	G	2.700e^-4	0.862	INTERGENIC
X	14221633	X_14221633_SNP [dm3] X_14327600_SNP [dm6]	T	A	2.701e^-4	0.862	INTRON dpr8
2R	9504674	2R_9504674_SNP [dm3] 2R_13617169_SNP [dm6]	C	A	2.730e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3R	13946648	3R_13946648_SNP [dm3] 3R_18120926_SNP [dm6]	T	A	2.737e^-4	0.862	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	16017997	2R_16017997_SNP [dm3] 2R_20130492_SNP [dm6]	A	G	2.737e^-4	0.862	INTERGENIC
2L	1199438	2L_1199438_SNP [dm3] 2L_1199438_SNP [dm6]	C	T	2.752e^-4	0.862	START_GAINED CG43348 UTR_5_PRIME CG43348 UPSTREAM CG43349 & 1 other
2R	9673392	2R_9673392_SNP [dm3] 2R_13785887_SNP [dm6]	A	T	2.757e^-4	0.862	INTRON Cpr50Ca
3L	17802996	3L_17802996_SNP [dm3] 3L_17809896_SNP [dm6]	A	G	2.770e^-4	0.862	UPSTREAM CG32191 INTRON cln3
3R	14051392	3R_14051392_SNP [dm3] 3R_18225670_SNP [dm6]	G	T	2.775e^-4	0.862	NON_SYNONYMOUS_CODING CG7168 UPSTREAM Mdh2 DOWNSTREAM CG7993	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	10440726	2L_10440726_SNP [dm3] 2L_10440726_SNP [dm6]	A	G	2.778e^-4	0.862	UTR_3_PRIME CG13142 DOWNSTREAM CG13142
3L	17880614	3L_17880614_SNP [dm3] 3L_17887514_SNP [dm6]	G	A	2.782e^-4	0.862	UPSTREAM CG16775 & 1 other INTERGENIC
2L	13670344	2L_13670344_SNP [dm3] 2L_13670344_SNP [dm6]	G	C	2.783e^-4	0.862	DOWNSTREAM CG18507 INTRON CG18507
2L	13063925	2L_13063925_SNP [dm3] 2L_13063925_SNP [dm6]	A	C	2.788e^-4	0.862	INTERGENIC
2L	3319909	2L_3319909_SNP [dm3] 2L_3319909_SNP [dm6]	C	T	2.794e^-4	0.862	UPSTREAM CG8837 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	22871553	3R_22871553_SNP [dm3] 3R_27045831_SNP [dm6]	C	A	2.804e^-4	0.862	INTRON RYa-R
X	4741097	X_4741097_DEL [dm3] X_4847064_DEL [dm6]	AA	A	2.809e^-4	0.862	INTRON CG42594
2L	6404221	2L_6404221_INS [dm3] 2L_6404221_INS [dm6]	C	CC	2.812e^-4	0.862	INTRON CG42368
2R	6925696	2R_6925696_SNP [dm3] 2R_11038191_SNP [dm6]	A	T	2.816e^-4	0.862	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	19633438	X_19633438_SNP [dm3] X_19739405_SNP [dm6]	C	G	2.821e^-4	0.862	UTR_3_PRIME CG14234
3R	14134312	3R_14134312_SNP [dm3] 3R_18308590_SNP [dm6]	A	G	2.826e^-4	0.862	INTRON PKD
3L	8021559	3L_8021559_SNP [dm3] 3L_8028459_SNP [dm6]	T	A	2.836e^-4	0.862	DOWNSTREAM tRNA:CR32370 INTRON nmo	TF binding site mE1_TFBS_cad
2L	5678696	2L_5678696_SNP [dm3] 2L_5678696_SNP [dm6]	A	C	2.837e^-4	0.862	UTR_5_PRIME CG12511
3R	2727778	3R_2727778_SNP [dm3] 3R_6902056_SNP [dm6]	G	A	2.838e^-4	0.862	INTRON Antp
3L	13407618	3L_13407618_SNP [dm3] 3L_13414518_SNP [dm6]	G	T	2.839e^-4	0.862	SYNONYMOUS_CODING flr	TF binding site mE1_TFBS_cad
2R	12132945	2R_12132945_SNP [dm3] 2R_16245440_SNP [dm6]	C	T	2.845e^-4	0.862	INTRON CngA	TF binding site mE1_TFBS_cad
2L	1178603	2L_1178603_SNP [dm3] 2L_1178603_SNP [dm6]	G	C	2.849e^-4	0.862	INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	2562872	3R_2562872_SNP [dm3] 3R_6737150_SNP [dm6]	A	G	2.850e^-4	0.862	INTRON pb	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	14053489	3R_14053489_SNP [dm3] 3R_18227767_SNP [dm6]	C	T	2.854e^-4	0.862	SYNONYMOUS_CODING Mdh2	TF binding site mE1_TFBS_HSA
X	3480932	X_3480932_SNP [dm3] X_3586899_SNP [dm6]	A	G	2.855e^-4	0.862	INTRON AstA-R1
X	19566831	X_19566831_SNP [dm3] X_19672798_SNP [dm6]	C	G	2.857e^-4	0.862	SYNONYMOUS_CODING et DOWNSTREAM Zw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	21085797	2L_21085797_INS [dm3] 2L_21085797_INS [dm6]	C	CGT	2.862e^-4	0.862	DOWNSTREAM ppk13 INTRON CG33509
2R	18741628	2R_18741628_SNP [dm3] 2R_22854105_SNP [dm6]	A	T	2.865e^-4	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	21262126	3R_21262126_SNP [dm3] 3R_25436404_SNP [dm6]	C	A	2.874e^-4	0.862	INTRON Fur1
3R	22154920	3R_22154920_SNP [dm3] 3R_26329198_SNP [dm6]	G	A	2.885e^-4	0.862	INTRON CG33970
2R	18994463	2R_18994463_DEL [dm3] 2R_23106940_DEL [dm6]	GT	G	2.891e^-4	0.862	INTERGENIC
2L	2729634	2L_2729634_SNP [dm3] 2L_2729634_SNP [dm6]	T	A	2.894e^-4	0.862	UPSTREAM CG31689 INTRON CG31689
2R	15015021	2R_15015021_SNP [dm3] 2R_19127516_SNP [dm6]	G	T	2.897e^-4	0.862	UTR_5_PRIME CG15117 UPSTREAM CG15117 INTRON CG15117
2R	2962532	2R_2962532_SNP [dm3] 2R_7075027_SNP [dm6]	T	G	2.901e^-4	0.862	UPSTREAM CG12831 INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	4870542	3L_4870542_SNP [dm3] 3L_4870542_SNP [dm6]	G	C	2.902e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2L	11397433	2L_11397433_SNP [dm3] 2L_11397433_SNP [dm6]	G	T	2.903e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs
3L	4971100	3L_4971100_SNP [dm3] 3L_4971100_SNP [dm6]	C	T	2.917e^-4	0.862	INTRON Con
3L	17254102	3L_17254102_SNP [dm3] 3L_17261002_SNP [dm6]	A	G	2.918e^-4	0.862	DOWNSTREAM CR43874 INTRON CR43870
2R	15776447	2R_15776447_SNP [dm3] 2R_19888942_SNP [dm6]	G	A	2.918e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_cad
3L	1335238	3L_1335238_SNP [dm3] 3L_1335238_SNP [dm6]	A	G	2.921e^-4	0.862	START_GAINED l_3_02640 UTR_5_PRIME l_3_02640 & 1 other UPSTREAM CG2211	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	7988601	3L_7988601_SNP [dm3] 3L_7995501_SNP [dm6]	C	T	2.924e^-4	0.862	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	13592624	2L_13592624_SNP [dm3] 2L_13592624_SNP [dm6]	G	A	2.931e^-4	0.862	INTRON kuz
X	3481089	X_3481089_SNP [dm3] X_3587056_SNP [dm6]	T	C	2.942e^-4	0.862	INTRON AstA-R1
2L	2459993	2L_2459993_SNP [dm3] 2L_2459993_SNP [dm6]	C	T	2.945e^-4	0.862	DOWNSTREAM dpp INTRON tRNA:Y1:22Fb	TF binding site BDTNP1_TFBS_dl
X	20430337	X_20430337_SNP [dm3] X_20559310_SNP [dm6]	G	C	2.948e^-4	0.862	INTRON RunxB
3R	7381054	3R_7381054_SNP [dm3] 3R_11555332_SNP [dm6]	A	G	2.949e^-4	0.862	DOWNSTREAM CG14708 INTERGENIC
3L	17843189	3L_17843189_SNP [dm3] 3L_17850089_SNP [dm6]	C	A	2.951e^-4	0.862	SYNONYMOUS_CODING CG7441 DOWNSTREAM CG7430	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	9261238	3L_9261238_SNP [dm3] 3L_9268138_SNP [dm6]	T	C	2.954e^-4	0.862	INTRON GluRIB
X	12451754	X_12451754_SNP [dm3] X_12557721_SNP [dm6]	T	A	2.956e^-4	0.862	INTRON CG43921
3R	5089243	3R_5089243_SNP [dm3] 3R_9263521_SNP [dm6]	G	T	2.957e^-4	0.862	SYNONYMOUS_CODING sage DOWNSTREAM VhaM8.9	TF binding site mE1_TFBS_chinmo mE1_TFBS_inv
3L	22909180	3L_22909180_SNP [dm3] 3L_22916080_SNP [dm6]	C	A	2.969e^-4	0.862	INTRON CG12768	transposable element FlyBase
3R	7826682	3R_7826682_INS [dm3] 3R_12000960_INS [dm6]	T	TTAGTAGCTT	2.970e^-4	0.862	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	7390952	2L_7390952_SNP [dm3] 2L_7390952_SNP [dm6]	A	G	2.980e^-4	0.862	DOWNSTREAM CG5160 & 1 other INTERGENIC
X	3481063	X_3481063_SNP [dm3] X_3587030_SNP [dm6]	A	T	2.984e^-4	0.862	INTRON AstA-R1
3L	4446730	3L_4446730_SNP [dm3] 3L_4446730_SNP [dm6]	T	C	2.989e^-4	0.862	UPSTREAM CR45739 INTRON CG12607
2L	3622841	2L_3622841_SNP [dm3] 2L_3622841_SNP [dm6]	G	A	2.991e^-4	0.862	SYNONYMOUS_CODING for
X	18361274	X_18361274_SNP [dm3] X_18467241_SNP [dm6]	T	C	2.994e^-4	0.862	INTRON CG32547
3R	999194	3R_999194_SNP [dm3] 3R_5173472_SNP [dm6]	A	T	2.999e^-4	0.862	UTR_3_PRIME cno DOWNSTREAM cno
3L	9082309	3L_9082309_SNP [dm3] 3L_9089209_SNP [dm6]	A	G	3.007e^-4	0.862	SYNONYMOUS_CODING Tequila INTRON Tequila	TF binding site mE1_TFBS_cad
3L	12710569	3L_12710569_SNP [dm3] 3L_12717469_SNP [dm6]	T	C	3.012e^-4	0.862	INTERGENIC
X	7905421	X_7905421_SNP [dm3] X_8011388_SNP [dm6]	T	C	3.026e^-4	0.862	INTRON Tbh
2L	13327330	2L_13327330_DEL [dm3] 2L_13327330_DEL [dm6]	GCCAAT	G	3.029e^-4	0.862	INTRON CG43778
3R	14040935	3R_14040935_SNP [dm3] 3R_18215213_SNP [dm6]	T	C	3.041e^-4	0.862	UPSTREAM CG14314 DOWNSTREAM CG7985 INTERGENIC
3L	4200024	3L_4200024_SNP [dm3] 3L_4200024_SNP [dm6]	C	T	3.043e^-4	0.862	SYNONYMOUS_CODING CG43367 DOWNSTREAM CG15005
2R	6670650	2R_6670650_SNP [dm3] 2R_10783145_SNP [dm6]	T	C	3.043e^-4	0.862	UPSTREAM CG33144 INTRON CG33144 EXON CR44299	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	20681259	2L_20681259_SNP [dm3] 2L_20681259_SNP [dm6]	G	A	3.045e^-4	0.862	SYNONYMOUS_CODING Cen	TF binding site mE1_TFBS_sens
2L	11504183	2L_11504183_SNP [dm3] 2L_11504183_SNP [dm6]	G	A	3.051e^-4	0.862	INTRON spz4
2R	17155449	2R_17155449_SNP [dm3] 2R_21267944_SNP [dm6]	C	T	3.058e^-4	0.862	UPSTREAM CG30393 INTRON Rgk3
2R	17528262	2R_17528262_SNP [dm3] 2R_21640757_SNP [dm6]	A	T	3.061e^-4	0.862	INTERGENIC
3R	15854695	3R_15854695_SNP [dm3] 3R_20028973_SNP [dm6]	T	C	3.085e^-4	0.862	SYNONYMOUS_CODING CG4854 UPSTREAM CG4424 DOWNSTREAM trem	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3R	7794478	3R_7794478_SNP [dm3] 3R_11968756_SNP [dm6]	T	C	3.086e^-4	0.862	INTRON GC1	TF binding site mE1_TFBS_HSA
X	8709827	X_8709827_SNP [dm3] X_8815794_SNP [dm6]	T	C	3.087e^-4	0.862	INTERGENIC
3L	15460049	3L_15460049_SNP [dm3] 3L_15466949_SNP [dm6]	T	G	3.088e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	2009717	3L_2009717_SNP [dm3] 3L_2009717_SNP [dm6]	G	T	3.089e^-4	0.862	DOWNSTREAM CR44535 EXON CR44535
X	17811073	X_17811073_SNP [dm3] X_17917040_SNP [dm6]	A	T	3.090e^-4	0.862	INTRON CG6847
2L	4009725	2L_4009725_SNP [dm3] 2L_4009725_SNP [dm6]	A	G	3.095e^-4	0.862	DOWNSTREAM CG43774 INTERGENIC
3R	22156327	3R_22156327_SNP [dm3] 3R_26330605_SNP [dm6]	A	T	3.096e^-4	0.862	INTRON CG33970
X	12619138	X_12619138_SNP [dm3] X_12725105_SNP [dm6]	C	G	3.099e^-4	0.862	INTRON Smr & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	2874722	3L_2874722_SNP [dm3] 3L_2874722_SNP [dm6]	A	G	3.113e^-4	0.862	INTRON CG43444	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18905942	3L_18905942_SNP [dm3] 3L_18912842_SNP [dm6]	C	T	3.115e^-4	0.862	DOWNSTREAM CG14077 INTRON CG14077
X	17196148	X_17196148_SNP [dm3] X_17302115_SNP [dm6]	G	T	3.116e^-4	0.862	UPSTREAM CG5445 & 1 other INTRON CG5445	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	935207	2L_935207_SNP [dm3] 2L_935207_SNP [dm6]	A	G	3.119e^-4	0.862	INTRON CG4341	TF binding site mE1_TFBS_chinmo mE1_TFBS_Trl
2L	10693443	2L_10693443_SNP [dm3] 2L_10693443_SNP [dm6]	A	G	3.128e^-4	0.862	SYNONYMOUS_CODING CG17108	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	2955196	2R_2955196_SNP [dm3] 2R_7067691_SNP [dm6]	G	T	3.129e^-4	0.862	UPSTREAM CG12836 INTERGENIC
X	15262365	X_15262365_SNP [dm3] X_15368332_SNP [dm6]	A	T	3.135e^-4	0.862	INTRON acj6
3L	5486191	3L_5486191_SNP [dm3] 3L_5493091_SNP [dm6]	G	A	3.148e^-4	0.862	DOWNSTREAM CR44520 INTERGENIC
3L	1264394	3L_1264394_SNP [dm3] 3L_1264394_SNP [dm6]	T	A	3.149e^-4	0.862	INTRON CG9134
3L	17850541	3L_17850541_SNP [dm3] 3L_17857441_SNP [dm6]	G	A	3.157e^-4	0.862	UPSTREAM CG5535 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	12924957	3R_12924957_SNP [dm3] 3R_17099235_SNP [dm6]	T	A	3.160e^-4	0.862	UPSTREAM cher INTRON cher
3L	16115373	3L_16115373_SNP [dm3] 3L_16122273_SNP [dm6]	G	T	3.164e^-4	0.862	SYNONYMOUS_CODING CG12272 DOWNSTREAM Taf4	TF binding site mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_ttk
3L	4913241	3L_4913241_DEL [dm3] 3L_4913241_DEL [dm6]	TGCTTGTCAACAT...	T	3.169e^-4	0.862	INTRON Rh50
X	14286145	X_14286145_INS [dm3] X_14392112_INS [dm6]	C	CAAACGCTCCCC...	3.174e^-4	0.862	INTRON dpr8
2L	19121883	2L_19121883_SNP [dm3] 2L_19121883_SNP [dm6]	A	G	3.175e^-4	0.862	UTR_3_PRIME l_2_37Cc DOWNSTREAM l_2_37Cc	regulatory region REDfly_CRMs
X	2250924	X_2250924_SNP [dm3] X_2356891_SNP [dm6]	A	G	3.175e^-4	0.862	INTRON ptr
3R	13946953	3R_13946953_SNP [dm3] 3R_18121231_SNP [dm6]	T	C	3.176e^-4	0.862	UPSTREAM sr INTRON sr	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	7508746	2R_7508746_SNP [dm3] 2R_11621241_SNP [dm6]	A	G	3.180e^-4	0.862	SYNONYMOUS_CODING CG9005	TF binding site mE1_TFBS_chinmo
3L	2009993	3L_2009993_SNP [dm3] 3L_2009993_SNP [dm6]	A	T	3.183e^-4	0.862	DOWNSTREAM CR44535 EXON CR44535
3R	17839942	3R_17839942_SNP [dm3] 3R_22014220_SNP [dm6]	G	A	3.184e^-4	0.862	UTR_3_PRIME Eip93F UPSTREAM CG6332
2L	3201316	2L_3201316_DEL [dm3] 2L_3201316_DEL [dm6]	TT	T	3.199e^-4	0.862	UPSTREAM CG34393 INTERGENIC
3L	13215880	3L_13215880_DEL [dm3] 3L_13222780_DEL [dm6]	GT	G	3.207e^-4	0.862	INTERGENIC
3L	19645008	3L_19645008_SNP [dm3] 3L_19651908_SNP [dm6]	G	A	3.215e^-4	0.862	INTRON tey	TF binding site mE1_TFBS_HSA
2R	7265728	2R_7265728_SNP [dm3] 2R_11378223_SNP [dm6]	A	T	3.218e^-4	0.862	SYNONYMOUS_CODING Tsp47F
2L	15502855	2L_15502855_SNP [dm3] 2L_15502855_SNP [dm6]	C	T	3.221e^-4	0.862	SYNONYMOUS_CODING lace	TF binding site mE1_TFBS_HSA
2R	11283970	2R_11283970_SNP [dm3] 2R_15396465_SNP [dm6]	A	T	3.221e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	1435071	3L_1435071_SNP [dm3] 3L_1435071_SNP [dm6]	T	G	3.224e^-4	0.862	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3925228	3L_3925228_SNP [dm3] 3L_3925228_SNP [dm6]	G	A	3.225e^-4	0.862	INTRON Eip63F-1
2R	18391368	2R_18391368_SNP [dm3] 2R_22503863_SNP [dm6]	G	T	3.226e^-4	0.862	INTRON px
3R	14005946	3R_14005946_SNP [dm3] 3R_18180224_SNP [dm6]	C	T	3.233e^-4	0.862	SYNONYMOUS_CODING cdm DOWNSTREAM PP2A-B'
3L	6280129	3L_6280129_SNP [dm3] 3L_6287029_SNP [dm6]	T	C	3.238e^-4	0.862	INTERGENIC
3L	17498938	3L_17498938_SNP [dm3] 3L_17505838_SNP [dm6]	A	G	3.239e^-4	0.862	INTRON Oatp74D
3L	15996800	3L_15996800_SNP [dm3] 3L_16003700_SNP [dm6]	C	G	3.242e^-4	0.862	INTRON CG5830	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2L	11499342	2L_11499342_SNP [dm3] 2L_11499342_SNP [dm6]	A	G	3.246e^-4	0.862	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2L	2490044	2L_2490044_SNP [dm3] 2L_2490044_SNP [dm6]	C	T	3.250e^-4	0.862	UTR_3_PRIME Slh DOWNSTREAM Slh	enhancer FlyBase TF binding site mE1_TFBS_chinmo
2L	21067945	2L_21067945_SNP [dm3] 2L_21067945_SNP [dm6]	C	A	3.251e^-4	0.862	INTRON CG9265
3L	1067752	3L_1067752_SNP [dm3] 3L_1067752_SNP [dm6]	C	T	3.253e^-4	0.862	INTRON bab1
X	14066840	X_14066840_SNP [dm3] X_14172807_SNP [dm6]	G	T	3.253e^-4	0.862	UPSTREAM betaNACtes1 INTERGENIC
3L	3800755	3L_3800755_SNP [dm3] 3L_3800755_SNP [dm6]	T	C	3.255e^-4	0.862	UTR_5_PRIME CG32264 INTRON CG32264	TF binding site mE1_TFBS_cad
2L	7025753	2L_7025753_SNP [dm3] 2L_7025753_SNP [dm6]	A	G	3.256e^-4	0.862	NON_SYNONYMOUS_CODING CG31908	TF binding site mE1_TFBS_cad
X	3481016	X_3481016_SNP [dm3] X_3586983_SNP [dm6]	C	T	3.257e^-4	0.862	INTRON AstA-R1
2L	15991353	2L_15991353_SNP [dm3] 2L_15991353_SNP [dm6]	T	A	3.259e^-4	0.862	INTERGENIC
2L	2495968	2L_2495968_SNP [dm3] 2L_2495968_SNP [dm6]	C	T	3.271e^-4	0.862	INTRON oaf
2R	14906953	2R_14906953_SNP [dm3] 2R_19019448_SNP [dm6]	G	C	3.275e^-4	0.862	INTERGENIC
2R	13652848	2R_13652848_SNP [dm3] 2R_17765343_SNP [dm6]	A	G	3.291e^-4	0.862	SYNONYMOUS_CODING OstDelta DOWNSTREAM CG5009	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	4977453	3L_4977453_SNP [dm3] 3L_4977453_SNP [dm6]	G	A	3.294e^-4	0.862	INTRON Con	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	8020628	3L_8020628_SNP [dm3] 3L_8027528_SNP [dm6]	G	A	3.296e^-4	0.862	INTRON nmo	TF binding site mE1_TFBS_cad
3L	2909515	3L_2909515_DEL [dm3] 3L_2909515_DEL [dm6]	TCCTATGGTG	T	3.297e^-4	0.862	INTRON Shab
3R	16620104	3R_16620104_INS [dm3] 3R_20794382_INS [dm6]	T	TTT	3.298e^-4	0.862	INTRON Syp	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	18741633	2R_18741633_INS [dm3] 2R_22854110_INS [dm6]	A	ACA	3.298e^-4	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA
3R	25672982	3R_25672982_SNP [dm3] 3R_29847260_SNP [dm6]	G	A	3.301e^-4	0.862	INTRON Cad99C
2L	9904681	2L_9904681_SNP [dm3] 2L_9904681_SNP [dm6]	G	A	3.302e^-4	0.862	SYNONYMOUS_CODING CG13124	TF binding site mE1_TFBS_cad
2L	588718	2L_588718_SNP [dm3] 2L_588718_SNP [dm6]	G	A	3.321e^-4	0.862	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
X	10385458	X_10385458_SNP [dm3] X_10491425_SNP [dm6]	C	G	3.328e^-4	0.862	INTRON spri
3L	19934001	3L_19934001_SNP [dm3] 3L_19940901_SNP [dm6]	T	G	3.330e^-4	0.862	INTRON Ac76E
2L	4008031	2L_4008031_SNP [dm3] 2L_4008031_SNP [dm6]	A	T	3.331e^-4	0.862	UPSTREAM CG43774 DOWNSTREAM CG43773 INTERGENIC
3L	1263370	3L_1263370_SNP [dm3] 3L_1263370_SNP [dm6]	G	A	3.333e^-4	0.862	INTRON CG9134
2R	16972011	2R_16972011_SNP [dm3] 2R_21084506_SNP [dm6]	T	C	3.341e^-4	0.862	UTR_5_PRIME Treh INTRON Treh	TF binding site mE1_TFBS_cad
3L	4870549	3L_4870549_SNP [dm3] 3L_4870549_SNP [dm6]	A	G	3.342e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
2R	15235803	2R_15235803_SNP [dm3] 2R_19348298_SNP [dm6]	G	T	3.346e^-4	0.862	INTRON Rgk1
2L	13544596	2L_13544596_INS [dm3] 2L_13544596_INS [dm6]	T	TG	3.347e^-4	0.862	DOWNSTREAM CG16853 INTRON B4
2L	15596702	2L_15596702_SNP [dm3] 2L_15596702_SNP [dm6]	G	A	3.353e^-4	0.862	INTERGENIC
2R	18741473	2R_18741473_SNP [dm3] 2R_22853950_SNP [dm6]	C	T	3.354e^-4	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	8273714	2L_8273714_SNP [dm3] 2L_8273714_SNP [dm6]	A	C	3.354e^-4	0.862	UTR_5_PRIME Btk29A INTRON Btk29A
3L	17867156	3L_17867156_SNP [dm3] 3L_17874056_SNP [dm6]	C	T	3.362e^-4	0.862	UPSTREAM CR43087 INTERGENIC	TF binding site mE1_TFBS_Trl
2L	1874948	2L_1874948_SNP [dm3] 2L_1874948_SNP [dm6]	T	C	3.366e^-4	0.862	INTRON CG31663
3R	11356562	3R_11356562_SNP [dm3] 3R_15530840_SNP [dm6]	T	A	3.368e^-4	0.862	INTRON CG31296
3R	11356570	3R_11356570_SNP [dm3] 3R_15530848_SNP [dm6]	T	C	3.368e^-4	0.862	INTRON CG31296
3L	17231964	3L_17231964_SNP [dm3] 3L_17238864_SNP [dm6]	A	T	3.373e^-4	0.862	UTR_3_PRIME CG6512 UPSTREAM Rbp6	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	18995012	2R_18995012_SNP [dm3] 2R_23107489_SNP [dm6]	T	C	3.377e^-4	0.862	INTERGENIC
2R	16172506	2R_16172506_SNP [dm3] 2R_20285001_SNP [dm6]	T	C	3.378e^-4	0.862	SYNONYMOUS_CODING CG16868	TF binding site mE1_TFBS_sens
2L	8168631	2L_8168631_DEL [dm3] 2L_8168631_DEL [dm6]	GG	G	3.379e^-4	0.862	INTRON Piezo	TF binding site BDTNP1_TFBS_twi
2L	1399158	2L_1399158_SNP [dm3] 2L_1399158_SNP [dm6]	A	G	3.382e^-4	0.862	INTRON lea	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	23316987	3R_23316987_SNP [dm3] 3R_27491265_SNP [dm6]	A	G	3.386e^-4	0.862	INTERGENIC
3R	23317013	3R_23317013_SNP [dm3] 3R_27491291_SNP [dm6]	G	A	3.386e^-4	0.862	INTERGENIC
2R	11177129	2R_11177129_SNP [dm3] 2R_15289624_SNP [dm6]	C	A	3.393e^-4	0.862	INTRON Trpm
2R	17706501	2R_17706501_SNP [dm3] 2R_21818996_SNP [dm6]	T	C	3.396e^-4	0.862	INTERGENIC
3L	8332543	3L_8332543_SNP [dm3] 3L_8339443_SNP [dm6]	A	C	3.397e^-4	0.862	SYNONYMOUS_CODING Pex2 UPSTREAM DNApol-alpha50 DOWNSTREAM Cpr66Cb	TF binding site BDTNP1_TFBS_dl
3L	17840685	3L_17840685_SNP [dm3] 3L_17847585_SNP [dm6]	C	A	3.405e^-4	0.862	SYNONYMOUS_CODING CG7430	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	1176817	2L_1176817_SNP [dm3] 2L_1176817_SNP [dm6]	C	T	3.409e^-4	0.862	SYNONYMOUS_CODING CG4887 UPSTREAM CG4896	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1230843	2L_1230843_SNP [dm3] 2L_1230843_SNP [dm6]	G	A	3.413e^-4	0.862	INTERGENIC
3R	20029997	3R_20029997_SNP [dm3] 3R_24204275_SNP [dm6]	G	A	3.414e^-4	0.862	INTRON twin	TF binding site mE1_TFBS_cnc
3L	20705003	3L_20705003_SNP [dm3] 3L_20711903_SNP [dm6]	T	C	3.416e^-4	0.862	DOWNSTREAM cmpy INTERGENIC	TF binding site mE1_TFBS_bab1 transposable element FlyBase
3L	12474984	3L_12474984_SNP [dm3] 3L_12481884_SNP [dm6]	C	T	3.421e^-4	0.862	UPSTREAM CG33725 INTRON CG10663
2L	16664103	2L_16664103_SNP [dm3] 2L_16664103_SNP [dm6]	A	G	3.424e^-4	0.862	UTR_3_PRIME Trpgamma DOWNSTREAM CG42389 & 1 other
3R	989938	3R_989938_SNP [dm3] 3R_5164216_SNP [dm6]	G	A	3.425e^-4	0.862	INTRON dpr16
3L	17835676	3L_17835676_SNP [dm3] 3L_17842576_SNP [dm6]	T	A	3.427e^-4	0.862	INTRON CG5567 EXON CR45175
2L	16706936	2L_16706936_SNP [dm3] 2L_16706936_SNP [dm6]	T	C	3.438e^-4	0.862	INTRON CG31808
3L	12271355	3L_12271355_SNP [dm3] 3L_12278255_SNP [dm6]	A	G	3.444e^-4	0.862	START_GAINED CG10426 UTR_5_PRIME CG10426	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	10505427	3L_10505427_SNP [dm3] 3L_10512327_SNP [dm6]	G	A	3.444e^-4	0.862	INTRON A2bp1
X	14291058	X_14291058_SNP [dm3] X_14397025_SNP [dm6]	C	T	3.446e^-4	0.862	INTRON dpr8
2R	15550587	2R_15550587_SNP [dm3] 2R_19663082_SNP [dm6]	A	T	3.449e^-4	0.862	NON_SYNONYMOUS_CODING CG11018 DOWNSTREAM hrg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
3L	4971178	3L_4971178_SNP [dm3] 3L_4971178_SNP [dm6]	G	A	3.455e^-4	0.862	INTRON Con
3L	15786228	3L_15786228_SNP [dm3] 3L_15793128_SNP [dm6]	T	C	3.459e^-4	0.862	INTERGENIC
3L	20585854	3L_20585854_SNP [dm3] 3L_20592754_SNP [dm6]	T	C	3.466e^-4	0.862	INTERGENIC
3L	4433978	3L_4433978_SNP [dm3] 3L_4433978_SNP [dm6]	T	G	3.472e^-4	0.862	SYNONYMOUS_CODING nAChRbeta1
2R	8311662	2R_8311662_SNP [dm3] 2R_12424157_SNP [dm6]	G	C	3.472e^-4	0.862	INTRON CG8520	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	4913137	3L_4913137_SNP [dm3] 3L_4913137_SNP [dm6]	T	C	3.478e^-4	0.862	INTRON Rh50
2R	17087207	2R_17087207_SNP [dm3] 2R_21199702_SNP [dm6]	C	G	3.491e^-4	0.862	UPSTREAM Glycogenin & 1 other DOWNSTREAM Lapsyn INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	17761197	3L_17761197_SNP [dm3] 3L_17768097_SNP [dm6]	T	A	3.501e^-4	0.862	INTERGENIC
2L	8274353	2L_8274353_SNP [dm3] 2L_8274353_SNP [dm6]	C	T	3.501e^-4	0.862	UPSTREAM Btk29A INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	11157943	3L_11157943_INS [dm3] 3L_11164843_INS [dm6]	A	GAATACAAG	3.502e^-4	0.862	UPSTREAM Alg10 & 1 other DOWNSTREAM CG32082 INTERGENIC
3L	4920599	3L_4920599_SNP [dm3] 3L_4920599_SNP [dm6]	C	T	3.509e^-4	0.862	DOWNSTREAM Rh50 INTERGENIC
2L	9863649	2L_9863649_DEL [dm3] 2L_9863649_DEL [dm6]	CCCC	C	3.510e^-4	0.862	INTRON nAChRalpha6	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
3L	17836055	3L_17836055_SNP [dm3] 3L_17842955_SNP [dm6]	A	G	3.511e^-4	0.862	DOWNSTREAM CR45175 & 1 other INTRON CG5567
2R	1039911	2R_1039911_SNP [dm3] 2R_5152406_SNP [dm6]	A	T	3.512e^-4	0.862	INTRON Atf6	transposable element FlyBase
3L	14724015	3L_14724015_SNP [dm3] 3L_14730915_SNP [dm6]	G	A	3.527e^-4	0.862	INTRON ome
X	20677720	X_20677720_SNP [dm3] X_20806693_SNP [dm6]	T	C	3.530e^-4	0.862	INTRON shakB
3L	6987027	3L_6987027_SNP [dm3] 3L_6993927_SNP [dm6]	T	A	3.532e^-4	0.862	INTRON bin	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	8644269	X_8644269_SNP [dm3] X_8750236_SNP [dm6]	A	T	3.547e^-4	0.862	INTERGENIC
3R	12454379	3R_12454379_SNP [dm3] 3R_16628657_SNP [dm6]	G	T	3.549e^-4	0.862	INTRON Fas1	TF binding site mE1_TFBS_HSA
X	6453935	X_6453935_SNP [dm3] X_6559902_SNP [dm6]	T	C	3.550e^-4	0.862	SYNONYMOUS_CODING CG34417 INTRON CG34417	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	15765463	3L_15765463_SNP [dm3] 3L_15772363_SNP [dm6]	A	T	3.553e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	17848047	3L_17848047_SNP [dm3] 3L_17854947_SNP [dm6]	G	T	3.555e^-4	0.862	INTRON CG5535	TF binding site mE1_TFBS_HSA
3R	11591060	3R_11591060_SNP [dm3] 3R_15765338_SNP [dm6]	A	G	3.561e^-4	0.862	DOWNSTREAM CG5623 INTERGENIC
3R	16704232	3R_16704232_SNP [dm3] 3R_20878510_SNP [dm6]	C	T	3.562e^-4	0.862	DOWNSTREAM TotZ EXON CR44048
3L	4870591	3L_4870591_SNP [dm3] 3L_4870591_SNP [dm6]	T	A	3.564e^-4	0.862	INTRON CG17150	TF binding site BDTNP1_TFBS_sna
X	12451451	X_12451451_DEL [dm3] X_12557418_DEL [dm6]	CACAAAAAAGAGGCACTACT...	C	3.575e^-4	0.862	INTRON CG43921
3R	605061	3R_605061_SNP [dm3] 3R_4779339_SNP [dm6]	G	C	3.575e^-4	0.862	INTRON CG14655
X	3480873	X_3480873_SNP [dm3] X_3586840_SNP [dm6]	A	G	3.576e^-4	0.862	INTRON AstA-R1
3L	9950658	3L_9950658_SNP [dm3] 3L_9957558_SNP [dm6]	G	A	3.583e^-4	0.862	INTRON CG34356
2L	7742767	2L_7742767_SNP [dm3] 2L_7742767_SNP [dm6]	G	A	3.586e^-4	0.862	DOWNSTREAM CG7214 INTERGENIC
2L	19842337	2L_19842337_SNP [dm3] 2L_19842337_SNP [dm6]	A	G	3.586e^-4	0.862	INTRON sick
3R	9740779	3R_9740779_SNP [dm3] 3R_13915057_SNP [dm6]	A	T	3.590e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	5486619	X_5486619_SNP [dm3] X_5592586_SNP [dm6]	T	C	3.598e^-4	0.862	INTERGENIC
2R	19489993	2R_19489993_SNP [dm3] 2R_23602470_SNP [dm6]	C	T	3.600e^-4	0.862	UPSTREAM CG5398 & 3 others INTERGENIC
3R	7826677	3R_7826677_SNP [dm3] 3R_12000955_SNP [dm6]	A	G	3.601e^-4	0.862	INTRON Tk & 1 other	TF binding site mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_HSA
2L	11520237	2L_11520237_SNP [dm3] 2L_11520237_SNP [dm6]	G	A	3.603e^-4	0.862	SYNONYMOUS_CODING CG14929 DOWNSTREAM CG14930 & 1 other
2R	14594630	2R_14594630_SNP [dm3] 2R_18707125_SNP [dm6]	C	A	3.611e^-4	0.862	SYNONYMOUS_CODING CG15073	TF binding site mE1_TFBS_sens
2L	15951558	2L_15951558_SNP [dm3] 2L_15951558_SNP [dm6]	C	T	3.617e^-4	0.862	INTRON beat-Ib
X	15158727	X_15158727_SNP [dm3] X_15264694_SNP [dm6]	T	C	3.620e^-4	0.862	INTERGENIC
2R	14594829	2R_14594829_SNP [dm3] 2R_18707324_SNP [dm6]	C	T	3.635e^-4	0.862	DOWNSTREAM CG15087 INTRON CG15073	TF binding site mE1_TFBS_sens
3L	9019371	3L_9019371_SNP [dm3] 3L_9026271_SNP [dm6]	C	T	3.639e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	18742119	2R_18742119_SNP [dm3] 2R_22854596_SNP [dm6]	G	A	3.641e^-4	0.862	UPSTREAM CG13531 INTRON RpL23	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14596308	2R_14596308_SNP [dm3] 2R_18708803_SNP [dm6]	C	G	3.656e^-4	0.862	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
2L	2490140	2L_2490140_SNP [dm3] 2L_2490140_SNP [dm6]	G	A	3.656e^-4	0.862	UTR_3_PRIME Slh DOWNSTREAM Slh	enhancer FlyBase TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8510479	X_8510479_SNP [dm3] X_8616446_SNP [dm6]	A	T	3.673e^-4	0.862	INTERGENIC
2L	15596726	2L_15596726_SNP [dm3] 2L_15596726_SNP [dm6]	T	C	3.677e^-4	0.862	INTERGENIC
2R	13250768	2R_13250768_SNP [dm3] 2R_17363263_SNP [dm6]	T	C	3.679e^-4	0.862	SYNONYMOUS_CODING mbl INTRON mbl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10402227	2R_10402227_DEL [dm3] 2R_14514722_DEL [dm6]	TT	T	3.688e^-4	0.862	INTRON Cpr51A & 1 other
2R	16017980	2R_16017980_SNP [dm3] 2R_20130475_SNP [dm6]	G	A	3.694e^-4	0.862	INTERGENIC
2R	16270556	2R_16270556_SNP [dm3] 2R_20383051_SNP [dm6]	A	G	3.696e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	17418846	2L_17418846_SNP [dm3] 2L_17418846_SNP [dm6]	T	C	3.698e^-4	0.862	SYNONYMOUS_CODING Dif	TF binding site mE1_TFBS_cad
3L	4440738	3L_4440738_SNP [dm3] 3L_4440738_SNP [dm6]	C	A	3.698e^-4	0.862	INTERGENIC
2L	1919301	2L_1919301_INS [dm3] 2L_1919301_INS [dm6]	A	AG	3.701e^-4	0.862	INTRON CG7337
3R	19560919	3R_19560919_SNP [dm3] 3R_23735197_SNP [dm6]	G	A	3.701e^-4	0.862	INTRON Hmgcr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	14574742	3L_14574742_SNP [dm3] 3L_14581642_SNP [dm6]	T	C	3.705e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	1570807	2R_1570807_SNP [dm3] 2R_5683302_SNP [dm6]	C	A	3.718e^-4	0.862	INTRON scaf	TF binding site BDTNP1_TFBS_da
X	7553607	X_7553607_SNP [dm3] X_7659574_SNP [dm6]	G	A	3.720e^-4	0.862	INTRON ct	TF binding site mE1_TFBS_inv
3L	1057735	3L_1057735_SNP [dm3] 3L_1057735_SNP [dm6]	T	G	3.720e^-4	0.862	INTRON bab1
3R	11585770	3R_11585770_SNP [dm3] 3R_15760048_SNP [dm6]	T	G	3.731e^-4	0.862	INTERGENIC
3R	25664780	3R_25664780_SNP [dm3] 3R_29839058_SNP [dm6]	A	G	3.738e^-4	0.862	INTERGENIC
3L	9344247	3L_9344247_SNP [dm3] 3L_9351147_SNP [dm6]	C	T	3.746e^-4	0.862	SYNONYMOUS_CODING PGRP-LF UTR_3_PRIME UGP DOWNSTREAM UGP
3L	4969492	3L_4969492_SNP [dm3] 3L_4969492_SNP [dm6]	T	C	3.751e^-4	0.862	INTRON Con	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6795374	2R_6795374_SNP [dm3] 2R_10907869_SNP [dm6]	A	C	3.752e^-4	0.862	INTERGENIC
2R	12223392	2R_12223392_SNP [dm3] 2R_16335887_SNP [dm6]	T	A	3.752e^-4	0.862	UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16270559	2R_16270559_SNP [dm3] 2R_20383054_SNP [dm6]	T	C	3.756e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	10615618	3L_10615618_SNP [dm3] 3L_10622518_SNP [dm6]	C	A	3.767e^-4	0.862	DOWNSTREAM CG42521 INTERGENIC
2L	1178586	2L_1178586_SNP [dm3] 2L_1178586_SNP [dm6]	C	A	3.767e^-4	0.862	DOWNSTREAM CG4887 INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17761253	3L_17761253_SNP [dm3] 3L_17768153_SNP [dm6]	T	G	3.768e^-4	0.862	INTERGENIC
2R	14287247	2R_14287247_SNP [dm3] 2R_18399742_SNP [dm6]	C	T	3.770e^-4	0.862	SYNONYMOUS_CODING GstE2 UPSTREAM GstE3 DOWNSTREAM GstE1
X	2660873	X_2660873_SNP [dm3] X_2766840_SNP [dm6]	A	G	3.774e^-4	0.862	INTRON kirre
3R	17907097	3R_17907097_SNP [dm3] 3R_22081375_SNP [dm6]	A	T	3.779e^-4	0.862	INTRON CG13408	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
3R	3606143	3R_3606143_SNP [dm3] 3R_7780421_SNP [dm6]	T	C	3.779e^-4	0.862	DOWNSTREAM CG18747 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_ttk
3L	3543025	3L_3543025_SNP [dm3] 3L_3543025_SNP [dm6]	T	G	3.789e^-4	0.862	UPSTREAM Eip63E INTRON Eip63E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3R	19953123	3R_19953123_SNP [dm3] 3R_24127401_SNP [dm6]	T	C	3.796e^-4	0.862	SPLICE_SITE_REGION Rootletin DOWNSTREAM CG5463 INTRON Rootletin	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	16870192	2R_16870192_SNP [dm3] 2R_20982687_SNP [dm6]	T	C	3.805e^-4	0.862	INTRON CG9313	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	8705999	3L_8705999_SNP [dm3] 3L_8712899_SNP [dm6]	G	A	3.809e^-4	0.862	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	12223902	2R_12223902_SNP [dm3] 2R_16336397_SNP [dm6]	C	A	3.810e^-4	0.862	UTR_5_PRIME Hmgs UPSTREAM Hmgs INTRON Vha44	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_en mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx
2R	16118607	2R_16118607_SNP [dm3] 2R_20231102_SNP [dm6]	C	G	3.819e^-4	0.862	UPSTREAM CG11044 INTERGENIC
3L	22604943	3L_22604943_DEL [dm3] 3L_22611843_DEL [dm6]	AC	T	3.828e^-4	0.862	INTRON CG14459
2R	14596386	2R_14596386_SNP [dm3] 2R_18708881_SNP [dm6]	T	C	3.831e^-4	0.862	SYNONYMOUS_CODING CG15087 DOWNSTREAM CG15073
3R	5126381	3R_5126381_SNP [dm3] 3R_9300659_SNP [dm6]	T	A	3.835e^-4	0.862	INTRON CG8861
3L	16115080	3L_16115080_SNP [dm3] 3L_16121980_SNP [dm6]	A	G	3.836e^-4	0.862	UPSTREAM CG12272 DOWNSTREAM Taf4 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	2911432	3L_2911432_SNP [dm3] 3L_2911432_SNP [dm6]	A	T	3.841e^-4	0.862	INTRON Shab
3L	7920125	3L_7920125_SNP [dm3] 3L_7927025_SNP [dm6]	A	G	3.851e^-4	0.862	INTRON syd
3L	1076958	3L_1076958_SNP [dm3] 3L_1076958_SNP [dm6]	A	G	3.862e^-4	0.862	INTRON bab1
2R	9469709	2R_9469709_SNP [dm3] 2R_13582204_SNP [dm6]	A	G	3.864e^-4	0.862	INTRON CG6191 & 1 other
X	16004107	X_16004107_SNP [dm3] X_16110074_SNP [dm6]	C	A	3.880e^-4	0.862	INTERGENIC
3L	17798429	3L_17798429_SNP [dm3] 3L_17805329_SNP [dm6]	T	C	3.896e^-4	0.862	NON_SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	9486613	3L_9486613_SNP [dm3] 3L_9493513_SNP [dm6]	G	C	3.899e^-4	0.862	INTERGENIC
2R	9672867	2R_9672867_INS [dm3] 2R_13785362_INS [dm6]	T	TT	3.900e^-4	0.862	DOWNSTREAM CR43810 INTRON Cpr50Ca
2L	4717389	2L_4717389_INS [dm3] 2L_4717389_INS [dm6]	A	AATTGTTACTT...	3.902e^-4	0.862	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	4717391	2L_4717391_SNP [dm3] 2L_4717391_SNP [dm6]	A	G	3.902e^-4	0.862	INTRON CG34351	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	17811045	X_17811045_SNP [dm3] X_17917012_SNP [dm6]	T	C	3.907e^-4	0.862	INTRON CG6847
2L	21336623	2L_21336623_SNP [dm3] 2L_21336623_SNP [dm6]	C	T	3.908e^-4	0.862	INTRON dimm	transposable element FlyBase
2R	6669531	2R_6669531_SNP [dm3] 2R_10782026_SNP [dm6]	C	A	3.910e^-4	0.862	UPSTREAM CR44299 INTRON CG33144	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
3R	11162200	3R_11162200_SNP [dm3] 3R_15336478_SNP [dm6]	A	G	3.914e^-4	0.862	SYNONYMOUS_CODING Sra-1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	10836058	X_10836058_SNP [dm3] X_10942025_SNP [dm6]	C	G	3.916e^-4	0.862	SYNONYMOUS_CODING Myo10A	TF binding site mE1_TFBS_chinmo
3L	10473155	3L_10473155_SNP [dm3] 3L_10480055_SNP [dm6]	A	G	3.928e^-4	0.862	INTERGENIC
X	18225703	X_18225703_SNP [dm3] X_18331670_SNP [dm6]	G	C	3.935e^-4	0.862	INTRON CG6123
3L	4960586	3L_4960586_SNP [dm3] 3L_4960586_SNP [dm6]	A	T	3.938e^-4	0.862	INTRON Con
2L	14366958	2L_14366958_SNP [dm3] 2L_14366958_SNP [dm6]	T	G	3.940e^-4	0.862	DOWNSTREAM spel1 INTERGENIC
3L	2009965	3L_2009965_SNP [dm3] 3L_2009965_SNP [dm6]	T	C	3.941e^-4	0.862	DOWNSTREAM CR44535 EXON CR44535
3L	14552952	3L_14552952_SNP [dm3] 3L_14559852_SNP [dm6]	T	C	3.948e^-4	0.862	UPSTREAM CG34039 & 1 other DOWNSTREAM Lk INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3L	1363632	3L_1363632_DEL [dm3] 3L_1363632_DEL [dm6]	CC	C	3.950e^-4	0.862	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	4875704	3L_4875704_SNP [dm3] 3L_4875704_SNP [dm6]	T	C	3.953e^-4	0.862	INTRON CG17150
2R	15153136	2R_15153136_SNP [dm3] 2R_19265631_SNP [dm6]	T	A	3.963e^-4	0.862	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens
2L	15205465	2L_15205465_SNP [dm3] 2L_15205465_SNP [dm6]	A	G	3.969e^-4	0.862	INTERGENIC
2L	21068559	2L_21068559_SNP [dm3] 2L_21068559_SNP [dm6]	C	A	3.972e^-4	0.862	INTRON CG9265
2R	19604739	2R_19604739_INS [dm3] 2R_23717216_INS [dm6]	T	TT	3.972e^-4	0.862	INTRON Sesn
3R	15672949	3R_15672949_SNP [dm3] 3R_19847227_SNP [dm6]	C	A	3.977e^-4	0.862	UPSTREAM CG4662 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	18741474	2R_18741474_SNP [dm3] 2R_22853951_SNP [dm6]	C	T	3.980e^-4	0.862	UPSTREAM RpL23 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	2375072	3L_2375072_SNP [dm3] 3L_2375072_SNP [dm6]	G	A	3.984e^-4	0.862	NON_SYNONYMOUS_CODING CG9004	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	2815371	3R_2815371_SNP [dm3] 3R_6989649_SNP [dm6]	T	C	3.989e^-4	0.862	INTRON Antp	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	4822931	3R_4822931_SNP [dm3] 3R_8997209_SNP [dm6]	A	G	3.991e^-4	0.862	UPSTREAM CG11977 INTRON CG31100
3L	4913153	3L_4913153_SNP [dm3] 3L_4913153_SNP [dm6]	A	T	3.996e^-4	0.862	INTRON Rh50
3R	25721225	3R_25721225_SNP [dm3] 3R_29895503_SNP [dm6]	C	T	3.997e^-4	0.862	INTRON CG31038	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	10480043	3L_10480043_SNP [dm3] 3L_10486943_SNP [dm6]	T	C	4.000e^-4	0.862	INTRON A2bp1
2R	16658820	2R_16658820_INS [dm3] 2R_20771315_INS [dm6]	C	CGCCCAC	4.003e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	17835680	3L_17835680_SNP [dm3] 3L_17842580_SNP [dm6]	T	G	4.009e^-4	0.862	INTRON CG5567 EXON CR45175
3R	26293801	3R_26293801_SNP [dm3] 3R_30468079_SNP [dm6]	T	C	4.009e^-4	0.862	INTRON PH4alphaEFB	TF binding site mE1_TFBS_cad
2R	7971832	2R_7971832_DEL [dm3] 2R_12084327_DEL [dm6]	CT	C	4.016e^-4	0.862	DOWNSTREAM jeb INTERGENIC
2L	2394212	2L_2394212_SNP [dm3] 2L_2394212_SNP [dm6]	A	T	4.019e^-4	0.862	INTRON VGlut
2R	6994889	2R_6994889_SNP [dm3] 2R_11107384_SNP [dm6]	G	T	4.025e^-4	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2L	7431030	2L_7431030_SNP [dm3] 2L_7431030_SNP [dm6]	C	A	4.028e^-4	0.862	DOWNSTREAM CG5261 INTRON CG5958
3L	6293568	3L_6293568_SNP [dm3] 3L_6300468_SNP [dm6]	C	T	4.031e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17416765	2L_17416765_SNP [dm3] 2L_17416765_SNP [dm6]	T	C	4.032e^-4	0.862	SYNONYMOUS_CODING Dif INTRON Dif
3R	25670384	3R_25670384_SNP [dm3] 3R_29844662_SNP [dm6]	G	C	4.032e^-4	0.862	INTRON Cad99C
2L	7709524	2L_7709524_SNP [dm3] 2L_7709524_SNP [dm6]	C	G	4.032e^-4	0.862	SYNONYMOUS_CODING Tep3 EXON CR44990	TF binding site mE1_TFBS_cad
2R	14885307	2R_14885307_SNP [dm3] 2R_18997802_SNP [dm6]	C	T	4.035e^-4	0.862	SYNONYMOUS_CODING tn	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	2946917	3L_2946917_SNP [dm3] 3L_2946917_SNP [dm6]	T	C	4.040e^-4	0.862	DOWNSTREAM Shab INTRON Shab
3L	5987301	3L_5987301_SNP [dm3] 3L_5994201_SNP [dm6]	C	T	4.048e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	2736428	2L_2736428_SNP [dm3] 2L_2736428_SNP [dm6]	C	A	4.053e^-4	0.862	NON_SYNONYMOUS_CODING CG31689 SPLICE_SITE_REGION CG31689 INTRON CG31689
2R	15710563	2R_15710563_SNP [dm3] 2R_19823058_SNP [dm6]	G	A	4.057e^-4	0.862	INTERGENIC
2R	18802709	2R_18802709_SNP [dm3] 2R_22915186_SNP [dm6]	T	C	4.068e^-4	0.862	INTRON nahoda
X	13481799	X_13481799_SNP [dm3] X_13587766_SNP [dm6]	G	T	4.068e^-4	0.862	INTRON Tango13
3L	4600592	3L_4600592_SNP [dm3] 3L_4600592_SNP [dm6]	T	C	4.069e^-4	0.862	INTRON Src64B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	9718027	3L_9718027_SNP [dm3] 3L_9724927_SNP [dm6]	G	A	4.071e^-4	0.862	SYNONYMOUS_CODING defl	TF binding site mE1_TFBS_cad
2L	4028929	2L_4028929_SNP [dm3] 2L_4028929_SNP [dm6]	G	A	4.088e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
X	3848574	X_3848574_INS [dm3] X_3954541_INS [dm6]	A	ATA	4.094e^-4	0.862	UTR_3_PRIME Vap-33A DOWNSTREAM Vap-33A
3R	11817231	3R_11817231_SNP [dm3] 3R_15991509_SNP [dm6]	A	T	4.102e^-4	0.862	UPSTREAM srp INTRON srp & 1 other
2L	996756	2L_996756_SNP [dm3] 2L_996756_SNP [dm6]	C	T	4.111e^-4	0.862	INTERGENIC
3L	8019015	3L_8019015_SNP [dm3] 3L_8025915_SNP [dm6]	A	T	4.115e^-4	0.862	INTRON nmo
3R	18409619	3R_18409619_SNP [dm3] 3R_22583897_SNP [dm6]	G	A	4.118e^-4	0.862	SYNONYMOUS_CODING CG33107 UPSTREAM Dph5 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	16009924	3R_16009924_SNP [dm3] 3R_20184202_SNP [dm6]	G	T	4.122e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	5345242	2R_5345242_SNP [dm3] 2R_9457737_SNP [dm6]	A	C	4.124e^-4	0.862	UPSTREAM Camta INTRON Camta
3R	14883999	3R_14883999_INS [dm3] 3R_19058277_INS [dm6]	C	CAGTCATTC	4.126e^-4	0.862	INTRON cdi	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
X	19541196	X_19541196_SNP [dm3] X_19647163_SNP [dm6]	C	T	4.128e^-4	0.862	UTR_3_PRIME Ranbp21 UPSTREAM Arp10
2R	15776760	2R_15776760_SNP [dm3] 2R_19889255_SNP [dm6]	A	T	4.129e^-4	0.862	INTERGENIC
3L	18866625	3L_18866625_SNP [dm3] 3L_18873525_SNP [dm6]	T	C	4.135e^-4	0.862	SYNONYMOUS_CODING Ugt UPSTREAM Rad9	TF binding site mE1_TFBS_sens
3R	16704899	3R_16704899_SNP [dm3] 3R_20879177_SNP [dm6]	C	T	4.136e^-4	0.862	DOWNSTREAM TotZ EXON CR44048
2L	6114113	2L_6114113_SNP [dm3] 2L_6114113_SNP [dm6]	C	A	4.138e^-4	0.862	INTRON stai
2R	17963187	2R_17963187_SNP [dm3] 2R_22075682_SNP [dm6]	G	C	4.149e^-4	0.862	UPSTREAM GlcT-1 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	19051777	3L_19051777_SNP [dm3] 3L_19058677_SNP [dm6]	C	A	4.154e^-4	0.862	DOWNSTREAM CG3797 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	20982261	3R_20982261_SNP [dm3] 3R_25156539_SNP [dm6]	G	A	4.162e^-4	0.862	INTERGENIC
3R	21262162	3R_21262162_SNP [dm3] 3R_25436440_SNP [dm6]	T	G	4.173e^-4	0.862	INTRON Fur1
3R	26450967	3R_26450967_SNP [dm3] 3R_30625245_SNP [dm6]	C	T	4.177e^-4	0.862	EXON CR44136	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
3R	21216069	3R_21216069_SNP [dm3] 3R_25390347_SNP [dm6]	C	T	4.183e^-4	0.862	INTRON Fur1
2R	6994893	2R_6994893_MNP [dm3] 2R_11107388_MNP [dm6]	GCA	ATG	4.184e^-4	0.862	UPSTREAM luna INTRON luna	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3L	4721304	3L_4721304_SNP [dm3] 3L_4721304_SNP [dm6]	C	G	4.193e^-4	0.862	INTRON RhoGEF64C
2R	9303356	2R_9303356_SNP [dm3] 2R_13415851_SNP [dm6]	T	C	4.204e^-4	0.862	INTRON CG42321	TF binding site mE1_TFBS_HSA
X	19567131	X_19567131_SNP [dm3] X_19673098_SNP [dm6]	A	G	4.215e^-4	0.862	SYNONYMOUS_CODING et DOWNSTREAM Zw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	12133051	2R_12133051_SNP [dm3] 2R_16245546_SNP [dm6]	C	T	4.215e^-4	0.862	INTRON CngA
2L	3623237	2L_3623237_SNP [dm3] 2L_3623237_SNP [dm6]	T	C	4.217e^-4	0.862	INTRON for
2R	9155027	2R_9155027_SNP [dm3] 2R_13267522_SNP [dm6]	C	T	4.219e^-4	0.862	DOWNSTREAM Dh31-R INTERGENIC
3L	4580480	3L_4580480_SNP [dm3] 3L_4580480_SNP [dm6]	T	C	4.234e^-4	0.862	INTRON CG42540
2R	13364759	2R_13364759_SNP [dm3] 2R_17477254_SNP [dm6]	T	C	4.238e^-4	0.862	UPSTREAM CG6520 & 1 other DOWNSTREAM CG43110 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
2R	14594841	2R_14594841_SNP [dm3] 2R_18707336_SNP [dm6]	G	A	4.242e^-4	0.862	DOWNSTREAM CG15087 INTRON CG15073	TF binding site mE1_TFBS_sens
2R	8967366	2R_8967366_SNP [dm3] 2R_13079861_SNP [dm6]	G	A	4.251e^-4	0.862	UPSTREAM Drl-2 INTERGENIC
3L	9486441	3L_9486441_SNP [dm3] 3L_9493341_SNP [dm6]	T	A	4.254e^-4	0.862	INTERGENIC
3L	1363638	3L_1363638_SNP [dm3] 3L_1363638_SNP [dm6]	A	T	4.259e^-4	0.862	INTRON Ptp61F	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med
2R	18802714	2R_18802714_SNP [dm3] 2R_22915191_SNP [dm6]	T	C	4.263e^-4	0.862	INTRON nahoda
3L	17798178	3L_17798178_SNP [dm3] 3L_17805078_SNP [dm6]	T	A	4.271e^-4	0.862	SYNONYMOUS_CODING CG32187 UPSTREAM CG5589	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4139499	2L_4139499_SNP [dm3] 2L_4139499_SNP [dm6]	C	A	4.273e^-4	0.862	INTERGENIC
3L	10480022	3L_10480022_MNP [dm3] 3L_10486922_MNP [dm6]	CTTTTGG	TACACAT	4.273e^-4	0.862	INTRON A2bp1
3L	10480039	3L_10480039_SNP [dm3] 3L_10486939_SNP [dm6]	G	T	4.273e^-4	0.862	INTRON A2bp1
2R	6455370	2R_6455370_SNP [dm3] 2R_10567865_SNP [dm6]	G	A	4.281e^-4	0.862	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_inv
2R	13650729	2R_13650729_SNP [dm3] 2R_17763224_SNP [dm6]	A	G	4.281e^-4	0.862	SYNONYMOUS_CODING CG5009
3R	24827777	3R_24827777_SNP [dm3] 3R_29002055_SNP [dm6]	C	T	4.282e^-4	0.862	INTRON wat	TF binding site BDTNP1_TFBS_twi
2L	3962323	2L_3962323_SNP [dm3] 2L_3962323_SNP [dm6]	A	G	4.292e^-4	0.862	INTRON fred
3L	3726865	3L_3726865_SNP [dm3] 3L_3726865_SNP [dm6]	T	C	4.293e^-4	0.862	INTRON CG32264
2R	16790819	2R_16790819_SNP [dm3] 2R_20903314_SNP [dm6]	A	G	4.294e^-4	0.862	UTR_5_PRIME otp	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	13286877	2R_13286877_SNP [dm3] 2R_17399372_SNP [dm6]	T	A	4.300e^-4	0.862	INTRON Sip1
2L	12399926	2L_12399926_SNP [dm3] 2L_12399926_SNP [dm6]	G	A	4.302e^-4	0.862	SYNONYMOUS_CODING Pkd2
3R	22494337	3R_22494337_MNP [dm3] 3R_26668615_MNP [dm6]	AAC	TGA	4.303e^-4	0.862	INTRON beat-VII	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	2960671	2R_2960671_SNP [dm3] 2R_7073166_SNP [dm6]	G	A	4.305e^-4	0.862	INTRON CG12831
2L	15635932	2L_15635932_DEL [dm3] 2L_15635932_DEL [dm6]	TC	G	4.307e^-4	0.862	DOWNSTREAM CG18480 INTERGENIC
2R	8612063	2R_8612063_DEL [dm3] 2R_12724558_DEL [dm6]	ATGTATAAG	A	4.311e^-4	0.862	INTRON CG42663
3L	19671341	3L_19671341_SNP [dm3] 3L_19678241_SNP [dm6]	C	T	4.314e^-4	0.862	DOWNSTREAM CR44678 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20226677	2R_20226677_SNP [dm3] 2R_24339154_SNP [dm6]	A	G	4.321e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18871487	2R_18871487_SNP [dm3] 2R_22983964_SNP [dm6]	G	A	4.333e^-4	0.862	SYNONYMOUS_CODING CG32834 DOWNSTREAM CG32833	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8216178	3R_8216178_SNP [dm3] 3R_12390456_SNP [dm6]	T	C	4.341e^-4	0.862	DOWNSTREAM CG10096 & 1 other INTRON CG34402
2L	21327362	2L_21327362_SNP [dm3] 2L_21327362_SNP [dm6]	T	G	4.341e^-4	0.862	DOWNSTREAM CR42696 INTERGENIC
2L	9876837	2L_9876837_SNP [dm3] 2L_9876837_SNP [dm6]	C	T	4.348e^-4	0.862	INTRON nAChRalpha6
2R	7039065	2R_7039065_SNP [dm3] 2R_11151560_SNP [dm6]	C	T	4.349e^-4	0.862	INTRON CG13229
3L	17732800	3L_17732800_SNP [dm3] 3L_17739700_SNP [dm6]	T	A	4.356e^-4	0.862	UPSTREAM CG7460 INTRON Ccn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15779980	2L_15779980_SNP [dm3] 2L_15779980_SNP [dm6]	C	T	4.370e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	13897645	3R_13897645_SNP [dm3] 3R_18071923_SNP [dm6]	A	G	4.373e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3200405	2L_3200405_SNP [dm3] 2L_3200405_SNP [dm6]	T	A	4.381e^-4	0.862	UPSTREAM CG34393 INTRON CG34393
2R	15776819	2R_15776819_INS [dm3] 2R_19889314_INS [dm6]	C	CA	4.385e^-4	0.862	INTERGENIC
2L	8168636	2L_8168636_SNP [dm3] 2L_8168636_SNP [dm6]	A	C	4.386e^-4	0.862	INTRON Piezo	TF binding site BDTNP1_TFBS_twi
3L	10480040	3L_10480040_SNP [dm3] 3L_10486940_SNP [dm6]	G	A	4.386e^-4	0.862	INTRON A2bp1
3L	10480042	3L_10480042_SNP [dm3] 3L_10486942_SNP [dm6]	T	G	4.386e^-4	0.862	INTRON A2bp1
2R	12100434	2R_12100434_SNP [dm3] 2R_16212929_SNP [dm6]	A	G	4.390e^-4	0.862	INTRON mrj	TF binding site mE1_TFBS_inv
3R	709383	3R_709383_DEL [dm3] 3R_4883661_DEL [dm6]	AA	A	4.393e^-4	0.862	INTERGENIC
2L	2491955	2L_2491955_SNP [dm3] 2L_2491955_SNP [dm6]	C	T	4.395e^-4	0.862	SYNONYMOUS_CODING Slh UPSTREAM oaf	enhancer FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	7905445	X_7905445_SNP [dm3] X_8011412_SNP [dm6]	T	C	4.397e^-4	0.862	INTRON Tbh
3L	8668053	3L_8668053_SNP [dm3] 3L_8674953_SNP [dm6]	G	A	4.409e^-4	0.862	UPSTREAM h INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	12845726	X_12845726_SNP [dm3] X_12951693_SNP [dm6]	A	T	4.410e^-4	0.862	INTRON hec
X	19626131	X_19626131_SNP [dm3] X_19732098_SNP [dm6]	G	A	4.419e^-4	0.862	SYNONYMOUS_CODING AP-1-2beta	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	10530207	3L_10530207_DEL [dm3] 3L_10537107_DEL [dm6]	TAACCCCT	T	4.425e^-4	0.862	INTRON A2bp1
3L	12835297	3L_12835297_SNP [dm3] 3L_12842197_SNP [dm6]	A	C	4.429e^-4	0.862	INTRON CG10960	TF binding site mE1_TFBS_zfh1
3L	13486105	3L_13486105_SNP [dm3] 3L_13493005_SNP [dm6]	G	A	4.431e^-4	0.862	INTRON Tgi
3L	10480033	3L_10480033_SNP [dm3] 3L_10486933_SNP [dm6]	T	G	4.441e^-4	0.862	INTRON A2bp1
3R	10603991	3R_10603991_SNP [dm3] 3R_14778269_SNP [dm6]	A	T	4.444e^-4	0.862	INTRON jvl
3L	10480030	3L_10480030_SNP [dm3] 3L_10486930_SNP [dm6]	C	A	4.446e^-4	0.862	INTRON A2bp1
3L	13410294	3L_13410294_SNP [dm3] 3L_13417194_SNP [dm6]	T	A	4.452e^-4	0.862	UTR_3_PRIME CG32121 DOWNSTREAM flr
2R	16017995	2R_16017995_SNP [dm3] 2R_20130490_SNP [dm6]	T	G	4.456e^-4	0.862	INTERGENIC
2R	12646380	2R_12646380_SNP [dm3] 2R_16758875_SNP [dm6]	T	G	4.457e^-4	0.862	INTRON unc-104
3L	1264444	3L_1264444_SNP [dm3] 3L_1264444_SNP [dm6]	C	T	4.466e^-4	0.862	INTRON CG9134
3L	16203783	3L_16203783_SNP [dm3] 3L_16210683_SNP [dm6]	T	G	4.467e^-4	0.862	INTERGENIC
2R	13657733	2R_13657733_SNP [dm3] 2R_17770228_SNP [dm6]	T	A	4.468e^-4	0.862	UPSTREAM CG18635 DOWNSTREAM CG6362 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	16902689	2R_16902689_SNP [dm3] 2R_21015184_SNP [dm6]	A	C	4.468e^-4	0.862	DOWNSTREAM CG3295 INTRON CG9346	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12617237	2R_12617237_DEL [dm3] 2R_16729732_DEL [dm6]	TT	T	4.470e^-4	0.862	INTRON CG30463
3L	17675199	3L_17675199_SNP [dm3] 3L_17682099_SNP [dm6]	A	G	4.472e^-4	0.862	INTRON CG34251
2L	5456877	2L_5456877_SNP [dm3] 2L_5456877_SNP [dm6]	A	G	4.473e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5755817	3R_5755817_SNP [dm3] 3R_9930095_SNP [dm6]	C	A	4.494e^-4	0.862	INTRON Glut4EF
2R	7057538	2R_7057538_SNP [dm3] 2R_11170033_SNP [dm6]	G	T	4.495e^-4	0.862	INTRON shn & 1 other
3R	13105169	3R_13105169_SNP [dm3] 3R_17279447_SNP [dm6]	C	A	4.504e^-4	0.862	INTERGENIC
X	14120121	X_14120121_SNP [dm3] X_14226088_SNP [dm6]	G	T	4.512e^-4	0.862	UPSTREAM mRpL38 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	14373426	3R_14373426_DEL [dm3] 3R_18547704_DEL [dm6]	TTAAA	T	4.513e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	14062828	3L_14062828_SNP [dm3] 3L_14069728_SNP [dm6]	A	C	4.526e^-4	0.862	INTRON CG32138
3L	6278242	3L_6278242_SNP [dm3] 3L_6285142_SNP [dm6]	A	C	4.527e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	17986029	2R_17986029_SNP [dm3] 2R_22098524_SNP [dm6]	A	G	4.535e^-4	0.862	INTRON CG11073	TF binding site BDTNP1_TFBS_dl
3L	17499205	3L_17499205_SNP [dm3] 3L_17506105_SNP [dm6]	T	C	4.536e^-4	0.862	INTRON Oatp74D
X	19567239	X_19567239_SNP [dm3] X_19673206_SNP [dm6]	T	C	4.540e^-4	0.862	SYNONYMOUS_CODING et DOWNSTREAM Zw	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	8267241	2L_8267241_SNP [dm3] 2L_8267241_SNP [dm6]	T	G	4.543e^-4	0.862	INTRON Btk29A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna
3L	18955118	3L_18955118_SNP [dm3] 3L_18962018_SNP [dm6]	A	G	4.550e^-4	0.862	INTERGENIC
2R	18868243	2R_18868243_SNP [dm3] 2R_22980720_SNP [dm6]	G	A	4.551e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	8510419	X_8510419_SNP [dm3] X_8616386_SNP [dm6]	C	A	4.552e^-4	0.862	INTERGENIC
2R	11503655	2R_11503655_SNP [dm3] 2R_15616150_SNP [dm6]	C	A	4.556e^-4	0.862	INTRON CG42524
2L	11498976	2L_11498976_SNP [dm3] 2L_11498976_SNP [dm6]	C	T	4.559e^-4	0.862	UPSTREAM CG6488 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
2R	16909407	2R_16909407_SNP [dm3] 2R_21021902_SNP [dm6]	T	C	4.566e^-4	0.862	SYNONYMOUS_CODING RIC-3 INTRON RIC-3
2L	16397184	2L_16397184_SNP [dm3] 2L_16397184_SNP [dm6]	A	G	4.574e^-4	0.862	INTERGENIC
2L	1178558	2L_1178558_SNP [dm3] 2L_1178558_SNP [dm6]	C	G	4.576e^-4	0.862	DOWNSTREAM CG4887 INTRON CG4896	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	1264498	3L_1264498_SNP [dm3] 3L_1264498_SNP [dm6]	G	C	4.580e^-4	0.862	INTRON CG9134
3L	5486228	3L_5486228_SNP [dm3] 3L_5493128_SNP [dm6]	A	C	4.581e^-4	0.862	DOWNSTREAM CR44520 INTERGENIC
X	19207846	X_19207846_DEL [dm3] X_19313813_DEL [dm6]	TAGT	T	4.583e^-4	0.862	INTRON out
X	7905773	X_7905773_SNP [dm3] X_8011740_SNP [dm6]	A	G	4.590e^-4	0.862	INTRON Tbh
3L	17837836	3L_17837836_SNP [dm3] 3L_17844736_SNP [dm6]	A	G	4.590e^-4	0.862	INTRON MED19
2R	9310044	2R_9310044_SNP [dm3] 2R_13422539_SNP [dm6]	T	G	4.602e^-4	0.862	DOWNSTREAM CG30060 INTRON CG42321	TF binding site mE1_TFBS_HSA
2L	15596705	2L_15596705_SNP [dm3] 2L_15596705_SNP [dm6]	A	G	4.602e^-4	0.862	INTERGENIC
3R	14202789	3R_14202789_SNP [dm3] 3R_18377067_SNP [dm6]	T	C	4.603e^-4	0.862	DOWNSTREAM CR44946 INTERGENIC
2L	6932215	2L_6932215_SNP [dm3] 2L_6932215_SNP [dm6]	C	T	4.604e^-4	0.862	START_GAINED CG43232 UTR_5_PRIME CG43232 DOWNSTREAM CG18304 & 1 other
2L	9162132	2L_9162132_SNP [dm3] 2L_9162132_SNP [dm6]	C	T	4.604e^-4	0.862	SYNONYMOUS_CODING CG32982
3R	11979385	3R_11979385_SNP [dm3] 3R_16153663_SNP [dm6]	C	T	4.605e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA
3L	2012543	3L_2012543_SNP [dm3] 3L_2012543_SNP [dm6]	C	T	4.610e^-4	0.862	INTERGENIC
3L	10448663	3L_10448663_DEL [dm3] 3L_10455563_DEL [dm6]	TATTTCC	T	4.611e^-4	0.862	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	15149999	3R_15149999_SNP [dm3] 3R_19324277_SNP [dm6]	A	G	4.611e^-4	0.862	INTRON Dl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	18923095	3L_18923095_SNP [dm3] 3L_18929995_SNP [dm6]	G	A	4.617e^-4	0.862	INTRON CG32204
X	17811148	X_17811148_SNP [dm3] X_17917115_SNP [dm6]	T	C	4.633e^-4	0.862	INTRON CG6847
3L	9495482	3L_9495482_SNP [dm3] 3L_9502382_SNP [dm6]	C	T	4.634e^-4	0.862	INTRON path	TF binding site BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA
3L	6019167	3L_6019167_SNP [dm3] 3L_6026067_SNP [dm6]	A	T	4.635e^-4	0.862	UTR_3_PRIME PVRAP
X	14505920	X_14505920_SNP [dm3] X_14611887_SNP [dm6]	G	C	4.635e^-4	0.862	INTRON NetA
2R	8315868	2R_8315868_SNP [dm3] 2R_12428363_SNP [dm6]	A	G	4.637e^-4	0.862	UPSTREAM CG13154 DOWNSTREAM Nup54 INTERGENIC
3R	10604022	3R_10604022_SNP [dm3] 3R_14778300_SNP [dm6]	T	A	4.637e^-4	0.862	INTRON jvl
2R	13993918	2R_13993918_SNP [dm3] 2R_18106413_SNP [dm6]	A	T	4.641e^-4	0.862	INTRON CG5756
3L	13575930	3L_13575930_SNP [dm3] 3L_13582830_SNP [dm6]	T	C	4.645e^-4	0.862	INTRON bru-3
2R	6640227	2R_6640227_SNP [dm3] 2R_10752722_SNP [dm6]	G	A	4.647e^-4	0.862	INTRON CG33144
2R	9673394	2R_9673394_SNP [dm3] 2R_13785889_SNP [dm6]	T	A	4.650e^-4	0.862	INTRON Cpr50Ca
X	8510475	X_8510475_SNP [dm3] X_8616442_SNP [dm6]	T	A	4.652e^-4	0.862	INTERGENIC
3R	4784626	3R_4784626_SNP [dm3] 3R_8958904_SNP [dm6]	T	G	4.654e^-4	0.862	INTRON CG11966	TF binding site mE1_TFBS_cad
2L	9831617	2L_9831617_SNP [dm3] 2L_9831617_SNP [dm6]	T	A	4.656e^-4	0.862	INTRON nAChRalpha6
3L	4913057	3L_4913057_SNP [dm3] 3L_4913057_SNP [dm6]	G	C	4.664e^-4	0.862	INTRON Rh50
X	12852747	X_12852747_SNP [dm3] X_12958714_SNP [dm6]	G	C	4.668e^-4	0.862	UPSTREAM CG32642 INTERGENIC
3L	13410299	3L_13410299_SNP [dm3] 3L_13417199_SNP [dm6]	T	C	4.679e^-4	0.862	UTR_3_PRIME CG32121 DOWNSTREAM flr
3R	17235231	3R_17235231_SNP [dm3] 3R_21409509_SNP [dm6]	A	G	4.680e^-4	0.862	SYNONYMOUS_CODING CheB93b DOWNSTREAM lbl
2R	18738853	2R_18738853_SNP [dm3] 2R_22851330_SNP [dm6]	A	G	4.681e^-4	0.862	SYNONYMOUS_CODING CG13531
2L	3416411	2L_3416411_SNP [dm3] 2L_3416411_SNP [dm6]	C	T	4.685e^-4	0.862	UPSTREAM CG31952 INTRON pgant2
3L	14574335	3L_14574335_SNP [dm3] 3L_14581235_SNP [dm6]	A	T	4.695e^-4	0.862	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	19541271	X_19541271_SNP [dm3] X_19647238_SNP [dm6]	A	T	4.697e^-4	0.862	UTR_3_PRIME Ranbp21	TF binding site mE1_TFBS_chinmo
3R	15761109	3R_15761109_SNP [dm3] 3R_19935387_SNP [dm6]	T	G	4.700e^-4	0.862	UPSTREAM mira INTRON Hs6st	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	15648024	2L_15648024_SNP [dm3] 2L_15648024_SNP [dm6]	G	A	4.700e^-4	0.862	SYNONYMOUS_CODING CG4587
3L	15786253	3L_15786253_SNP [dm3] 3L_15793153_SNP [dm6]	A	G	4.716e^-4	0.862	INTERGENIC
2L	12632317	2L_12632317_SNP [dm3] 2L_12632317_SNP [dm6]	T	G	4.720e^-4	0.862	INTRON Ref2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	15808302	3R_15808302_SNP [dm3] 3R_19982580_SNP [dm6]	T	C	4.725e^-4	0.862	INTRON Hs6st
3R	5027426	3R_5027426_SNP [dm3] 3R_9201704_SNP [dm6]	T	C	4.726e^-4	0.862	INTRON pum	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3L	21501741	3L_21501741_SNP [dm3] 3L_21508641_SNP [dm6]	G	T	4.728e^-4	0.862	INTRON M6	TF binding site BDTNP1_TFBS_dl
X	4107865	X_4107865_SNP [dm3] X_4213832_SNP [dm6]	C	T	4.735e^-4	0.862	DOWNSTREAM CG43288 INTERGENIC	TF binding site BDTNP1_TFBS_gt
3L	18987234	3L_18987234_SNP [dm3] 3L_18994134_SNP [dm6]	T	G	4.741e^-4	0.862	UPSTREAM CG18135 INTRON CG18135	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_HSA
3R	15820734	3R_15820734_SNP [dm3] 3R_19995012_SNP [dm6]	A	C	4.741e^-4	0.862	INTRON Hs6st	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	14145012	2R_14145012_SNP [dm3] 2R_18257507_SNP [dm6]	C	A	4.744e^-4	0.862	EXON CR44421	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	14286256	X_14286256_SNP [dm3] X_14392223_SNP [dm6]	A	T	4.746e^-4	0.862	INTRON dpr8
3L	17849530	3L_17849530_SNP [dm3] 3L_17856430_SNP [dm6]	A	G	4.746e^-4	0.862	UPSTREAM CG5535 INTRON CG5535	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA

By genomic position
Variant impact
Gene name

Surv_AAmanitin_0_2ug phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results