DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=3.263e^-4)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test
No significant result.

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

3126 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2L	10196985	2L_10196985_SNP [dm3] 2L_10196985_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	SPLICE_SITE_REGION Sur INTRON Sur
2L	10197179	2L_10197179_SNP [dm3] 2L_10197179_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Sur
2L	10275726	2L_10275726_SNP [dm3] 2L_10275726_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Utx
2L	10276605	2L_10276605_SNP [dm3] 2L_10276605_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
2L	10277292	2L_10277292_SNP [dm3] 2L_10277292_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	UPSTREAM Utx INTRON Utx	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_zfh1
2L	10278154	2L_10278154_SNP [dm3] 2L_10278154_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl
2L	10278209	2L_10278209_SNP [dm3] 2L_10278209_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl
2L	10278225	2L_10278225_SNP [dm3] 2L_10278225_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl
2L	10278242	2L_10278242_SNP [dm3] 2L_10278242_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	SPLICE_SITE_REGION Utx UPSTREAM Utx DOWNSTREAM CG34043 INTRON Utx	TF binding site BDTNP1_TFBS_dl
2L	10278314	2L_10278314_SNP [dm3] 2L_10278314_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Utx UPSTREAM Utx DOWNSTREAM CG34043	TF binding site BDTNP1_TFBS_dl
2L	10278393	2L_10278393_SNP [dm3] 2L_10278393_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Utx UPSTREAM Utx DOWNSTREAM CG34043	TF binding site BDTNP1_TFBS_dl
2L	10278398	2L_10278398_SNP [dm3] 2L_10278398_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Utx UPSTREAM Utx DOWNSTREAM CG34043	TF binding site BDTNP1_TFBS_dl
2L	10278407	2L_10278407_SNP [dm3] 2L_10278407_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Utx UPSTREAM Utx DOWNSTREAM CG34043	TF binding site BDTNP1_TFBS_dl
2L	10575021	2L_10575021_SNP [dm3] 2L_10575021_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	DOWNSTREAM w-cup INTRON Trim9
2L	10701637	2L_10701637_SNP [dm3] 2L_10701637_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	UPSTREAM Lip1 DOWNSTREAM Lip2 INTERGENIC	regulatory region REDfly_CRMs
2L	10701657	2L_10701657_SNP [dm3] 2L_10701657_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UPSTREAM Lip1 DOWNSTREAM Lip2 INTERGENIC	regulatory region REDfly_CRMs
2L	10945902	2L_10945902_SNP [dm3] 2L_10945902_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON dpr2
2L	11292759	2L_11292759_SNP [dm3] 2L_11292759_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
2L	11292882	2L_11292882_SNP [dm3] 2L_11292882_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
2L	11292978	2L_11292978_INS [dm3] 2L_11292978_INS [dm6]	T	CATAA	1.836e^-72	7.575e^-69	INTERGENIC
2L	11293996	2L_11293996_SNP [dm3] 2L_11293996_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
2L	11294663	2L_11294663_SNP [dm3] 2L_11294663_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	11294755	2L_11294755_SNP [dm3] 2L_11294755_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	11295797	2L_11295797_SNP [dm3] 2L_11295797_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	12205357	2L_12205357_SNP [dm3] 2L_12205357_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	UPSTREAM aret INTRON aret
2L	12420212	2L_12420212_SNP [dm3] 2L_12420212_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON vir-1
2L	12542164	2L_12542164_SNP [dm3] 2L_12542164_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTRON bun	TF binding site BDTNP1_TFBS_dl
2L	12542758	2L_12542758_SNP [dm3] 2L_12542758_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	UPSTREAM CR42746 INTRON bun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_Trl
2L	12543925	2L_12543925_SNP [dm3] 2L_12543925_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON bun & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	12604969	2L_12604969_SNP [dm3] 2L_12604969_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	1300565	2L_1300565_SNP [dm3] 2L_1300565_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTERGENIC
2L	13112191	2L_13112191_SNP [dm3] 2L_13112191_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
2L	13623072	2L_13623072_SNP [dm3] 2L_13623072_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON kuz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	13642871	2L_13642871_SNP [dm3] 2L_13642871_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM ics EXON CR44726	TF binding site mE1_TFBS_bab1
2L	14169586	2L_14169586_SNP [dm3] 2L_14169586_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG43333
2L	14169740	2L_14169740_SNP [dm3] 2L_14169740_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON CG43333
2L	15421606	2L_15421606_SNP [dm3] 2L_15421606_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	15435053	2L_15435053_SNP [dm3] 2L_15435053_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	UTR_3_PRIME CG4161 UPSTREAM CR44861
2L	15435054	2L_15435054_SNP [dm3] 2L_15435054_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UTR_3_PRIME CG4161 UPSTREAM CR44861
2L	16932867	2L_16932867_SNP [dm3] 2L_16932867_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932878	2L_16932878_SNP [dm3] 2L_16932878_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932911	2L_16932911_SNP [dm3] 2L_16932911_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932913	2L_16932913_SNP [dm3] 2L_16932913_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932921	2L_16932921_SNP [dm3] 2L_16932921_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932924	2L_16932924_SNP [dm3] 2L_16932924_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932931	2L_16932931_SNP [dm3] 2L_16932931_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
2L	16932965	2L_16932965_SNP [dm3] 2L_16932965_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
2L	17267560	2L_17267560_SNP [dm3] 2L_17267560_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	17334106	2L_17334106_SNP [dm3] 2L_17334106_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
2L	17580855	2L_17580855_SNP [dm3] 2L_17580855_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	DOWNSTREAM CR45698 INTERGENIC
2L	17588412	2L_17588412_SNP [dm3] 2L_17588412_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM Oli DOWNSTREAM CR44411 EXON CR44411	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	17590818	2L_17590818_SNP [dm3] 2L_17590818_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	SPLICE_SITE_REGION Oli DOWNSTREAM CG6870 INTRON Oli
2L	17591005	2L_17591005_SNP [dm3] 2L_17591005_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UTR_3_PRIME Oli DOWNSTREAM CG6870
2L	17591012	2L_17591012_SNP [dm3] 2L_17591012_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	UTR_3_PRIME Oli DOWNSTREAM CG6870
2L	17591021	2L_17591021_SNP [dm3] 2L_17591021_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_3_PRIME Oli DOWNSTREAM CG6870
2L	17591037	2L_17591037_SNP [dm3] 2L_17591037_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	UTR_3_PRIME Oli DOWNSTREAM CG6870
2L	17611236	2L_17611236_SNP [dm3] 2L_17611236_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_sna
2L	17632370	2L_17632370_SNP [dm3] 2L_17632370_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
2L	17882328	2L_17882328_SNP [dm3] 2L_17882328_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
2L	18628692	2L_18628692_SNP [dm3] 2L_18628692_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON MESR3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	20039647	2L_20039647_SNP [dm3] 2L_20039647_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON sNPF
2L	20070339	2L_20070339_SNP [dm3] 2L_20070339_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20070466	2L_20070466_SNP [dm3] 2L_20070466_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG10730 INTRON bwa	TF binding site mE1_TFBS_cad
2L	20147612	2L_20147612_SNP [dm3] 2L_20147612_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
2L	20415763	2L_20415763_SNP [dm3] 2L_20415763_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG10949 UPSTREAM CG10947	TF binding site mE1_TFBS_sens
2L	20574980	2L_20574980_SNP [dm3] 2L_20574980_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTRON CR45347
2L	2797132	2L_2797132_SNP [dm3] 2L_2797132_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	UPSTREAM CR43821 INTRON Syt1	TF binding site mE1_TFBS_Trl
2L	3876505	2L_3876505_SNP [dm3] 2L_3876505_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON capu
2L	5495429	2L_5495429_SNP [dm3] 2L_5495429_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTERGENIC
2L	5506199	2L_5506199_SNP [dm3] 2L_5506199_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	5630314	2L_5630314_SNP [dm3] 2L_5630314_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON CG31646	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo
2L	6317451	2L_6317451_SNP [dm3] 2L_6317451_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON Ddr
2L	7023589	2L_7023589_SNP [dm3] 2L_7023589_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING ade3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	7354259	2L_7354259_SNP [dm3] 2L_7354259_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
2L	7385584	2L_7385584_SNP [dm3] 2L_7385584_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG5149
2L	7388759	2L_7388759_SNP [dm3] 2L_7388759_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu UPSTREAM CG5149	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
2L	7388951	2L_7388951_SNP [dm3] 2L_7388951_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389018	2L_7389018_SNP [dm3] 2L_7389018_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389023	2L_7389023_SNP [dm3] 2L_7389023_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389026	2L_7389026_SNP [dm3] 2L_7389026_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389070	2L_7389070_SNP [dm3] 2L_7389070_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING gudu UPSTREAM CG5149
2L	7389426	2L_7389426_SNP [dm3] 2L_7389426_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7389624	2L_7389624_SNP [dm3] 2L_7389624_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7389681	2L_7389681_SNP [dm3] 2L_7389681_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7389762	2L_7389762_SNP [dm3] 2L_7389762_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7389792	2L_7389792_SNP [dm3] 2L_7389792_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7389822	2L_7389822_SNP [dm3] 2L_7389822_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING gudu
2L	7509926	2L_7509926_SNP [dm3] 2L_7509926_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTRON RapGAP1
2L	7916501	2L_7916501_SNP [dm3] 2L_7916501_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON Snoo
2L	8207340	2L_8207340_SNP [dm3] 2L_8207340_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8207388	2L_8207388_SNP [dm3] 2L_8207388_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8207421	2L_8207421_SNP [dm3] 2L_8207421_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG8419	TF binding site mE1_TFBS_sens
2L	8207489	2L_8207489_SNP [dm3] 2L_8207489_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON CG8419
2L	8207494	2L_8207494_SNP [dm3] 2L_8207494_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG8419
2L	8207498	2L_8207498_SNP [dm3] 2L_8207498_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG8419
2L	8207508	2L_8207508_SNP [dm3] 2L_8207508_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTRON CG8419
2L	8222248	2L_8222248_SNP [dm3] 2L_8222248_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Pvr
2L	8232472	2L_8232472_SNP [dm3] 2L_8232472_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON Pvr
2L	8609144	2L_8609144_SNP [dm3] 2L_8609144_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON Sema-1a
2L	9272718	2L_9272718_SNP [dm3] 2L_9272718_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON Ggamma30A	TF binding site mE1_TFBS_Trl
2L	9406905	2L_9406905_SNP [dm3] 2L_9406905_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTRON Shawl
2L	9406928	2L_9406928_DEL [dm3] 2L_9406928_DEL [dm6]	CAGCACAC	C	1.836e^-72	7.575e^-69	INTRON Shawl
2L	9490862	2L_9490862_SNP [dm3] 2L_9490862_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	DOWNSTREAM Gdi INTERGENIC
2L	9491005	2L_9491005_DEL [dm3] 2L_9491005_DEL [dm6]	TCAA	T	1.836e^-72	7.575e^-69	DOWNSTREAM Gdi INTERGENIC
2L	9491009	2L_9491009_INS [dm3] 2L_9491009_INS [dm6]	G	GACATGT	1.836e^-72	7.575e^-69	DOWNSTREAM Gdi INTERGENIC
2L	9491016	2L_9491016_SNP [dm3] 2L_9491016_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	DOWNSTREAM Gdi INTERGENIC
2L	9640714	2L_9640714_SNP [dm3] 2L_9640714_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON Apoltp
2L	9747129	2L_9747129_SNP [dm3] 2L_9747129_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	UPSTREAM Nckx30C DOWNSTREAM Cyp4e3 INTERGENIC
2R	11976164	2R_11976164_DEL [dm3] 2R_16088659_DEL [dm6]	TAAGCCTGAT	T	1.836e^-72	7.575e^-69	INTRON Dg
2R	14081638	2R_14081638_SNP [dm3] 2R_18194133_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	16182155	2R_16182155_SNP [dm3] 2R_20294650_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	EXON CR44639
2R	19567794	2R_19567794_SNP [dm3] 2R_23680271_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	UTR_3_PRIME Pde8 DOWNSTREAM Pde8
2R	19571002	2R_19571002_SNP [dm3] 2R_23683479_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING St3 DOWNSTREAM St1	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	20485065	2R_20485065_SNP [dm3] 2R_24597542_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_3_PRIME pio UPSTREAM CG13587	TF binding site mE1_TFBS_chinmo
2R	7584030	2R_7584030_SNP [dm3] 2R_11696525_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	UTR_3_PRIME CG13197
2R	7970070	2R_7970070_SNP [dm3] 2R_12082565_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	DOWNSTREAM CG13186 INTERGENIC
2R	9667913	2R_9667913_SNP [dm3] 2R_13780408_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	UPSTREAM S-Lap7 INTRON Cpr50Ca
2R	9667964	2R_9667964_SNP [dm3] 2R_13780459_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	UPSTREAM S-Lap7 INTRON Cpr50Ca
3L	10242179	3L_10242179_SNP [dm3] 3L_10249079_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	UPSTREAM CR44540 INTERGENIC
3L	10256559	3L_10256559_SNP [dm3] 3L_10263459_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	DOWNSTREAM can INTERGENIC
3L	10799934	3L_10799934_SNP [dm3] 3L_10806834_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	UPSTREAM CR44347 INTERGENIC
3L	10804502	3L_10804502_SNP [dm3] 3L_10811402_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10804508	3L_10804508_SNP [dm3] 3L_10811408_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	10826623	3L_10826623_SNP [dm3] 3L_10833523_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	10826626	3L_10826626_SNP [dm3] 3L_10833526_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	10826635	3L_10826635_SNP [dm3] 3L_10833535_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	10826636	3L_10826636_SNP [dm3] 3L_10833536_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	10870678	3L_10870678_SNP [dm3] 3L_10877578_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6418	TF binding site mE1_TFBS_sens
3L	10872476	3L_10872476_SNP [dm3] 3L_10879376_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872479	3L_10872479_SNP [dm3] 3L_10879379_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872497	3L_10872497_SNP [dm3] 3L_10879397_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872609	3L_10872609_SNP [dm3] 3L_10879509_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Trl
3L	10874378	3L_10874378_SNP [dm3] 3L_10881278_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6409	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10874867	3L_10874867_SNP [dm3] 3L_10881767_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6409
3L	10874873	3L_10874873_SNP [dm3] 3L_10881773_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6409
3L	10876471	3L_10876471_SNP [dm3] 3L_10883371_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG7949 UPSTREAM CG6409 DOWNSTREAM CG6404
3L	10877170	3L_10877170_SNP [dm3] 3L_10884070_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	DOWNSTREAM CG6404 & 1 other INTERGENIC
3L	10894978	3L_10894978_SNP [dm3] 3L_10901878_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	10909452	3L_10909452_SNP [dm3] 3L_10916352_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	10909465	3L_10909465_SNP [dm3] 3L_10916365_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
3L	11897083	3L_11897083_SNP [dm3] 3L_11903983_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON CG44837
3L	13280654	3L_13280654_SNP [dm3] 3L_13287554_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	UPSTREAM CR45753 INTERGENIC
3L	13915525	3L_13915525_DEL [dm3] 3L_13922425_DEL [dm6]	TGTATG	CC	1.836e^-72	7.575e^-69	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	13915533	3L_13915533_SNP [dm3] 3L_13922433_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	UPSTREAM Rgl INTRON Rgl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	14054249	3L_14054249_SNP [dm3] 3L_14061149_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG32138
3L	14054272	3L_14054272_SNP [dm3] 3L_14061172_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTRON CG32138
3L	14054332	3L_14054332_SNP [dm3] 3L_14061232_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTRON CG32138
3L	14081045	3L_14081045_SNP [dm3] 3L_14087945_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
3L	1422817	3L_1422817_SNP [dm3] 3L_1422817_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG9173 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	1435944	3L_1435944_SNP [dm3] 3L_1435944_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1435978	3L_1435978_SNP [dm3] 3L_1435978_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	1435982	3L_1435982_SNP [dm3] 3L_1435982_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	1436013	3L_1436013_SNP [dm3] 3L_1436013_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING SA-2 INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15027231	3L_15027231_SNP [dm3] 3L_15034131_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	START_GAINED Sytbeta UTR_5_PRIME Sytbeta INTRON Sytbeta
3L	15034846	3L_15034846_SNP [dm3] 3L_15041746_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Rpn12R INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl
3L	15034951	3L_15034951_SNP [dm3] 3L_15041851_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Rpn12R DOWNSTREAM ind INTRON Sytbeta	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15090242	3L_15090242_SNP [dm3] 3L_15097142_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Aats-gly UPSTREAM CTPsyn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	15268631	3L_15268631_SNP [dm3] 3L_15275531_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	15659060	3L_15659060_SNP [dm3] 3L_15665960_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	15659088	3L_15659088_SNP [dm3] 3L_15665988_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	1630015	3L_1630015_DEL [dm3] 3L_1630015_DEL [dm6]	TAAGCGTAGGCTCCC...	A	1.836e^-72	7.575e^-69	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1630031	3L_1630031_SNP [dm3] 3L_1630031_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	1630157	3L_1630157_SNP [dm3] 3L_1630157_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
3L	1630271	3L_1630271_SNP [dm3] 3L_1630271_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM GC DOWNSTREAM nSyb INTERGENIC
3L	1633920	3L_1633920_SNP [dm3] 3L_1633920_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON nSyb	TF binding site mE1_TFBS_cad
3L	1634052	3L_1634052_SNP [dm3] 3L_1634052_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON nSyb	TF binding site mE1_TFBS_cad
3L	1650298	3L_1650298_SNP [dm3] 3L_1650298_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON CG13920
3L	1650387	3L_1650387_INS [dm3] 3L_1650387_INS [dm6]	A	AAA	1.836e^-72	7.575e^-69	INTRON CG13920
3L	1650402	3L_1650402_SNP [dm3] 3L_1650402_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON CG13920
3L	16671093	3L_16671093_SNP [dm3] 3L_16677993_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG43954 UTR_3_PRIME Lasp
3L	16675182	3L_16675182_SNP [dm3] 3L_16682082_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON Lasp & 1 other
3L	16820923	3L_16820923_SNP [dm3] 3L_16827823_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	16820934	3L_16820934_SNP [dm3] 3L_16827834_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON CG13024	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	17384591	3L_17384591_SNP [dm3] 3L_17391491_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	18166031	3L_18166031_SNP [dm3] 3L_18172931_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON W	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA
3L	1820086	3L_1820086_SNP [dm3] 3L_1820086_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON GV1
3L	1868356	3L_1868356_SNP [dm3] 3L_1868356_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3L	1868357	3L_1868357_DEL [dm3] 3L_1868357_DEL [dm6]	CA	C	1.836e^-72	7.575e^-69	UTR_3_PRIME CG12025 DOWNSTREAM CG12025
3L	18876057	3L_18876057_SNP [dm3] 3L_18882957_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG3961
3L	19316313	3L_19316313_SNP [dm3] 3L_19323213_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON pip
3L	19432361	3L_19432361_DEL [dm3] 3L_19439261_DEL [dm6]	ACTA	A	1.836e^-72	7.575e^-69	DOWNSTREAM CR45732 INTERGENIC
3L	19432411	3L_19432411_SNP [dm3] 3L_19439311_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	DOWNSTREAM CR45732 INTERGENIC
3L	19432576	3L_19432576_SNP [dm3] 3L_19439476_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	DOWNSTREAM CR45732 INTERGENIC
3L	19452941	3L_19452941_SNP [dm3] 3L_19459841_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
3L	2182097	3L_2182097_SNP [dm3] 3L_2182097_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	2182100	3L_2182100_SNP [dm3] 3L_2182100_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	2381402	3L_2381402_SNP [dm3] 3L_2381402_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG45186
3L	2626580	3L_2626580_SNP [dm3] 3L_2626580_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2626749	3L_2626749_SNP [dm3] 3L_2626749_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2626794	3L_2626794_SNP [dm3] 3L_2626794_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON Pxn	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	2626901	3L_2626901_SNP [dm3] 3L_2626901_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON Pxn
3L	2648219	3L_2648219_SNP [dm3] 3L_2648219_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	SPLICE_SITE_REGION CG1246 UPSTREAM CG1246 INTRON CG1246
3L	2903700	3L_2903700_DEL [dm3] 3L_2903700_DEL [dm6]	CCGTGCGC	C	1.836e^-72	7.575e^-69	INTRON Shab
3L	3279958	3L_3279958_INS [dm3] 3L_3279958_INS [dm6]	A	ACGAATGGTACAACGAATGC...	1.836e^-72	7.575e^-69	UPSTREAM CG12017 INTERGENIC
3L	3284257	3L_3284257_SNP [dm3] 3L_3284257_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG12017
3L	3284298	3L_3284298_DEL [dm3] 3L_3284298_DEL [dm6]	AA	A	1.836e^-72	7.575e^-69	INTRON CG12017
3L	3431945	3L_3431945_SNP [dm3] 3L_3431945_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON eIF5B
3L	3728384	3L_3728384_SNP [dm3] 3L_3728384_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTRON CG32264
3L	3794161	3L_3794161_SNP [dm3] 3L_3794161_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON CG32264
3L	4312054	3L_4312054_SNP [dm3] 3L_4312054_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	4312167	3L_4312167_SNP [dm3] 3L_4312167_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	4312168	3L_4312168_SNP [dm3] 3L_4312168_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	4312170	3L_4312170_SNP [dm3] 3L_4312170_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
3L	4313428	3L_4313428_SNP [dm3] 3L_4313428_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	UPSTREAM Claspin INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	4314962	3L_4314962_SNP [dm3] 3L_4314962_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Claspin
3L	4691270	3L_4691270_SNP [dm3] 3L_4691270_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	5121503	3L_5121503_SNP [dm3] 3L_5128403_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	5400338	3L_5400338_SNP [dm3] 3L_5407238_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
3L	6446536	3L_6446536_SNP [dm3] 3L_6453436_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON CG42747
3L	6683806	3L_6683806_SNP [dm3] 3L_6690706_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING SP1173
3L	6683903	3L_6683903_SNP [dm3] 3L_6690803_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING SP1173
3L	6684254	3L_6684254_SNP [dm3] 3L_6691154_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING SP1173
3L	6684531	3L_6684531_SNP [dm3] 3L_6691431_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON SP1173
3L	7796484	3L_7796484_SNP [dm3] 3L_7803384_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	7798105	3L_7798105_SNP [dm3] 3L_7805005_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM CG32369 INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	7798777	3L_7798777_SNP [dm3] 3L_7805677_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3L	7799373	3L_7799373_SNP [dm3] 3L_7806273_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	7799376	3L_7799376_SNP [dm3] 3L_7806276_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb mE1_TFBS_Trl
3L	7799412	3L_7799412_SNP [dm3] 3L_7806312_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7800240	3L_7800240_SNP [dm3] 3L_7807140_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG32369
3L	7800641	3L_7800641_SNP [dm3] 3L_7807541_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site mE1_TFBS_Trl
3L	7802084	3L_7802084_SNP [dm3] 3L_7808984_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG32369	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3L	7803147	3L_7803147_SNP [dm3] 3L_7810047_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM CG32369 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7803586	3L_7803586_SNP [dm3] 3L_7810486_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	UPSTREAM CG32369 DOWNSTREAM Pdp1 INTERGENIC
3L	8011457	3L_8011457_SNP [dm3] 3L_8018357_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON nmo
3L	8011463	3L_8011463_SNP [dm3] 3L_8018363_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON nmo
3L	8266905	3L_8266905_SNP [dm3] 3L_8273805_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON Dscam4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8266907	3L_8266907_SNP [dm3] 3L_8273807_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON Dscam4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3L	8670115	3L_8670115_SNP [dm3] 3L_8677015_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON h	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi
3L	8710651	3L_8710651_SNP [dm3] 3L_8717551_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC
3L	8710853	3L_8710853_SNP [dm3] 3L_8717753_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	8997632	3L_8997632_SNP [dm3] 3L_9004532_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	UPSTREAM Doc3 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	9219476	3L_9219476_SNP [dm3] 3L_9226376_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTERGENIC
3L	993824	3L_993824_SNP [dm3] 3L_993824_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	UPSTREAM CG12038 DOWNSTREAM Glut1 INTERGENIC
3R	10276311	3R_10276311_SNP [dm3] 3R_14450589_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTRON cv-c
3R	10552223	3R_10552223_SNP [dm3] 3R_14726501_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON CG7530
3R	10904612	3R_10904612_SNP [dm3] 3R_15078890_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6974 DOWNSTREAM CG6966
3R	10904630	3R_10904630_SNP [dm3] 3R_15078908_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG6974 DOWNSTREAM CG6966
3R	11343597	3R_11343597_SNP [dm3] 3R_15517875_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11343650	3R_11343650_SNP [dm3] 3R_15517928_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11343678	3R_11343678_SNP [dm3] 3R_15517956_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	11464606	3R_11464606_SNP [dm3] 3R_15638884_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	DOWNSTREAM CG43336 INTERGENIC
3R	11464650	3R_11464650_SNP [dm3] 3R_15638928_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	DOWNSTREAM CG43336 INTERGENIC
3R	11464695	3R_11464695_SNP [dm3] 3R_15638973_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	DOWNSTREAM CG43336 INTERGENIC	TF binding site BDTNP1_TFBS_da
3R	12253759	3R_12253759_SNP [dm3] 3R_16428037_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	UPSTREAM CR45631 INTERGENIC	regulatory region REDfly_CRMs
3R	14514802	3R_14514802_SNP [dm3] 3R_18689080_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	14514829	3R_14514829_SNP [dm3] 3R_18689107_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14515702	3R_14515702_SNP [dm3] 3R_18689980_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14515921	3R_14515921_SNP [dm3] 3R_18690199_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo
3R	14515945	3R_14515945_SNP [dm3] 3R_18690223_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Muc91C	TF binding site mE1_TFBS_chinmo
3R	14785717	3R_14785717_SNP [dm3] 3R_18959995_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG42613 & 1 other
3R	14928529	3R_14928529_SNP [dm3] 3R_19102807_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG6040
3R	14928530	3R_14928530_SNP [dm3] 3R_19102808_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG6040
3R	14928537	3R_14928537_SNP [dm3] 3R_19102815_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG6040
3R	14928538	3R_14928538_SNP [dm3] 3R_19102816_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG6040
3R	15356121	3R_15356121_SNP [dm3] 3R_19530399_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15356846	3R_15356846_SNP [dm3] 3R_19531124_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	15356990	3R_15356990_SNP [dm3] 3R_19531268_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON Dys	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	16021769	3R_16021769_SNP [dm3] 3R_20196047_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC
3R	16408420	3R_16408420_SNP [dm3] 3R_20582698_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG16953
3R	17721409	3R_17721409_SNP [dm3] 3R_21895687_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG6678
3R	17721419	3R_17721419_SNP [dm3] 3R_21895697_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG6678
3R	17721422	3R_17721422_SNP [dm3] 3R_21895700_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG6678
3R	18205466	3R_18205466_SNP [dm3] 3R_22379744_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG18596 UPSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18205631	3R_18205631_DEL [dm3] 3R_22379909_DEL [dm6]	TA	T	1.836e^-72	7.575e^-69	UTR_3_PRIME CG18596 UPSTREAM CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sbb
3R	18205960	3R_18205960_SNP [dm3] 3R_22380238_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	DOWNSTREAM CG18596 INTRON CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	18205969	3R_18205969_SNP [dm3] 3R_22380247_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	DOWNSTREAM CG18596 INTRON CG34149	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3R	18206000	3R_18206000_SNP [dm3] 3R_22380278_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING CG34149 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18206062	3R_18206062_SNP [dm3] 3R_22380340_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
3R	18206371	3R_18206371_SNP [dm3] 3R_22380649_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18206524	3R_18206524_SNP [dm3] 3R_22380802_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 DOWNSTREAM CG18596	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	18206840	3R_18206840_SNP [dm3] 3R_22381118_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING CG34149 UPSTREAM CG43342 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	18206978	3R_18206978_SNP [dm3] 3R_22381256_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	UPSTREAM CG43342 & 1 other DOWNSTREAM CG34149 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	18206986	3R_18206986_SNP [dm3] 3R_22381264_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	UPSTREAM CG43342 & 1 other DOWNSTREAM CG34149 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
3R	18262025	3R_18262025_SNP [dm3] 3R_22436303_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UPSTREAM CG13847 INTERGENIC
3R	20096585	3R_20096585_SNP [dm3] 3R_24270863_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20096593	3R_20096593_SNP [dm3] 3R_24270871_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20096650	3R_20096650_SNP [dm3] 3R_24270928_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	UTR_5_PRIME jar	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3R	20364987	3R_20364987_SNP [dm3] 3R_24539265_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG5789	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21010598	3R_21010598_SNP [dm3] 3R_25184876_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	START_GAINED dan UTR_5_PRIME dan UPSTREAM dan INTRON lobo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	21013005	3R_21013005_SNP [dm3] 3R_25187283_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON lobo & 1 other	TF binding site BDTNP1_TFBS_dl
3R	21679316	3R_21679316_SNP [dm3] 3R_25853594_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG5886
3R	22766178	3R_22766178_INS [dm3] 3R_26940456_INS [dm6]	G	GTG	1.836e^-72	7.575e^-69	INTRON sda
3R	23268395	3R_23268395_SNP [dm3] 3R_27442673_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23268406	3R_23268406_SNP [dm3] 3R_27442684_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	23289262	3R_23289262_SNP [dm3] 3R_27463540_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	UPSTREAM CG13978 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	23338588	3R_23338588_SNP [dm3] 3R_27512866_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC
3R	23405319	3R_23405319_SNP [dm3] 3R_27579597_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON wdb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_jumu
3R	23413350	3R_23413350_SNP [dm3] 3R_27587628_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG5639	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	23450192	3R_23450192_SNP [dm3] 3R_27624470_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING CG5612 INTRON Tusp
3R	23450197	3R_23450197_SNP [dm3] 3R_27624475_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG5612 INTRON Tusp
3R	23672772	3R_23672772_SNP [dm3] 3R_27847050_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Or98a INTRON CG34353
3R	23685542	3R_23685542_SNP [dm3] 3R_27859820_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG34353
3R	23751216	3R_23751216_SNP [dm3] 3R_27925494_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_5_PRIME mino UPSTREAM mino & 1 other DOWNSTREAM RpL4	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	24231860	3R_24231860_SNP [dm3] 3R_28406138_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTERGENIC
3R	26584280	3R_26584280_SNP [dm3] 3R_30758558_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26584289	3R_26584289_SNP [dm3] 3R_30758567_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	26819464	3R_26819464_SNP [dm3] 3R_30993742_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON 5-HT7
3R	3635668	3R_3635668_DEL [dm3] 3R_7809946_DEL [dm6]	TCCT	T	1.836e^-72	7.575e^-69	UTR_5_PRIME CG2993 UPSTREAM CG31472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	3635681	3R_3635681_SNP [dm3] 3R_7809959_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_5_PRIME CG2993 UPSTREAM CG31472	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3R	3876683	3R_3876683_SNP [dm3] 3R_8050961_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	DOWNSTREAM CG43061 INTRON CG43060
3R	3914948	3R_3914948_SNP [dm3] 3R_8089226_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG7910 UPSTREAM CR44330
3R	3914978	3R_3914978_SNP [dm3] 3R_8089256_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG7910 UPSTREAM CR44330
3R	3915035	3R_3915035_SNP [dm3] 3R_8089313_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG7910 UPSTREAM CR44330
3R	3941534	3R_3941534_SNP [dm3] 3R_8115812_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON puc	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	4712579	3R_4712579_DEL [dm3] 3R_8886857_DEL [dm6]	AA	A	1.836e^-72	7.575e^-69	INTRON pyd
3R	4712680	3R_4712680_DEL [dm3] 3R_8886958_DEL [dm6]	CT	C	1.836e^-72	7.575e^-69	INTRON pyd
3R	4900265	3R_4900265_SNP [dm3] 3R_9074543_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON pum
3R	4925305	3R_4925305_SNP [dm3] 3R_9099583_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON pum
3R	5855328	3R_5855328_SNP [dm3] 3R_10029606_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON Mical
3R	5855346	3R_5855346_SNP [dm3] 3R_10029624_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON Mical
3R	5856025	3R_5856025_SNP [dm3] 3R_10030303_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON Mical
3R	6190248	3R_6190248_SNP [dm3] 3R_10364526_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Rfx	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6415017	3R_6415017_SNP [dm3] 3R_10589295_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON hth
3R	6415020	3R_6415020_SNP [dm3] 3R_10589298_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTRON hth
3R	6422251	3R_6422251_SNP [dm3] 3R_10596529_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON hth	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6426073	3R_6426073_SNP [dm3] 3R_10600351_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_disco mE1_TFBS_HSA
3R	6429162	3R_6429162_SNP [dm3] 3R_10603440_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
3R	6443034	3R_6443034_SNP [dm3] 3R_10617312_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON hth	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6456911	3R_6456911_SNP [dm3] 3R_10631189_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON hth	TF binding site mE1_TFBS_cad
3R	6457745	3R_6457745_SNP [dm3] 3R_10632023_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON hth	TF binding site mE1_TFBS_cad
3R	6462668	3R_6462668_SNP [dm3] 3R_10636946_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON hth
3R	6464511	3R_6464511_SNP [dm3] 3R_10638789_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	UTR_5_PRIME hth UPSTREAM CR44018	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	7825022	3R_7825022_SNP [dm3] 3R_11999300_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	START_GAINED Ect3 UTR_5_PRIME Ect3 INTRON Tk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7826810	3R_7826810_SNP [dm3] 3R_12001088_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON Tk & 1 other
3R	7826848	3R_7826848_SNP [dm3] 3R_12001126_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON Tk & 1 other
3R	7827407	3R_7827407_SNP [dm3] 3R_12001685_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Ect3 INTRON Tk
3R	7827410	3R_7827410_SNP [dm3] 3R_12001688_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Ect3 INTRON Tk
3R	7827416	3R_7827416_SNP [dm3] 3R_12001694_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Ect3 INTRON Tk
3R	7828892	3R_7828892_SNP [dm3] 3R_12003170_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING Ect3 INTRON Tk	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	7829320	3R_7829320_SNP [dm3] 3R_12003598_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	DOWNSTREAM Ect3 INTRON Tk
3R	7829456	3R_7829456_SNP [dm3] 3R_12003734_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	DOWNSTREAM Ect3 INTRON Tk
3R	8541431	3R_8541431_SNP [dm3] 3R_12715709_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON Men
3R	8623947	3R_8623947_SNP [dm3] 3R_12798225_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
3R	8624526	3R_8624526_SNP [dm3] 3R_12798804_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTERGENIC
3R	8878873	3R_8878873_SNP [dm3] 3R_13053151_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON pic	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_sens
3R	8925037	3R_8925037_SNP [dm3] 3R_13099315_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON timeout	TF binding site BDTNP1_TFBS_twi
3R	9528092	3R_9528092_SNP [dm3] 3R_13702370_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING ninaB DOWNSTREAM Adgf-D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9528131	3R_9528131_SNP [dm3] 3R_13702409_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING ninaB DOWNSTREAM Adgf-D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3R	9528133	3R_9528133_SNP [dm3] 3R_13702411_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	NON_SYNONYMOUS_CODING ninaB DOWNSTREAM Adgf-D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
X	10114837	X_10114837_SNP [dm3] X_10220804_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG34408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10114924	X_10114924_SNP [dm3] X_10220891_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG34408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10114934	X_10114934_SNP [dm3] X_10220901_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON CG34408	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	10571315	X_10571315_SNP [dm3] X_10677282_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON X11Lbeta
X	10575842	X_10575842_SNP [dm3] X_10681809_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON X11Lbeta
X	10589020	X_10589020_SNP [dm3] X_10694987_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON X11Lbeta
X	11730886	X_11730886_SNP [dm3] X_11836853_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	UTR_3_PRIME rudhira UPSTREAM CR43908 DOWNSTREAM CG15741
X	12972506	X_12972506_SNP [dm3] X_13078473_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	UTR_3_PRIME rad DOWNSTREAM hep
X	12972521	X_12972521_SNP [dm3] X_13078488_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	UTR_3_PRIME rad DOWNSTREAM hep
X	14077385	X_14077385_SNP [dm3] X_14183352_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	DOWNSTREAM CG11584 INTERGENIC
X	15555591	X_15555591_SNP [dm3] X_15661558_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	DOWNSTREAM CR43299 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	16667064	X_16667064_SNP [dm3] X_16773031_SNP [dm6]	A	T	1.836e^-72	7.575e^-69	INTRON if	TF binding site BDTNP1_TFBS_da
X	16667125	X_16667125_SNP [dm3] X_16773092_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON if	TF binding site BDTNP1_TFBS_da
X	16758374	X_16758374_SNP [dm3] X_16864341_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16758505	X_16758505_SNP [dm3] X_16864472_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON CG13003	TF binding site BDTNP1_TFBS_twi
X	16816692	X_16816692_SNP [dm3] X_16922659_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON CG4928
X	17335010	X_17335010_SNP [dm3] X_17440977_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTRON CG12994
X	17335031	X_17335031_SNP [dm3] X_17440998_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTRON CG12994
X	17335086	X_17335086_SNP [dm3] X_17441053_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTRON CG12994
X	17335125	X_17335125_SNP [dm3] X_17441092_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG12994
X	18041192	X_18041192_SNP [dm3] X_18147159_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
X	18041239	X_18041239_SNP [dm3] X_18147206_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTERGENIC
X	18041296	X_18041296_SNP [dm3] X_18147263_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC
X	18636576	X_18636576_SNP [dm3] X_18742543_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTERGENIC
X	20009633	X_20009633_SNP [dm3] X_20115600_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
X	20393743	X_20393743_SNP [dm3] X_20522716_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Tak1
X	20748140	X_20748140_INS [dm3] X_20877113_INS [dm6]	T	AA	1.836e^-72	7.575e^-69	INTRON shakB
X	21291012	X_21291012_SNP [dm3] X_21419985_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC
X	2139081	X_2139081_SNP [dm3] X_2245048_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	UTR_3_PRIME fs_1_K10
X	2226065	X_2226065_SNP [dm3] X_2332032_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Ilp6 INTRON phl
X	2229623	X_2229623_SNP [dm3] X_2335590_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	UPSTREAM Ilp6 INTRON phl	TF binding site BDTNP1_TFBS_dl
X	3198854	X_3198854_SNP [dm3] X_3304821_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON dnc	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
X	3757318	X_3757318_SNP [dm3] X_3863285_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING yin UPSTREAM roX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	3757324	X_3757324_SNP [dm3] X_3863291_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING yin UPSTREAM roX1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA
X	4044128	X_4044128_SNP [dm3] X_4150095_SNP [dm6]	T	G	1.836e^-72	7.575e^-69	INTRON Fas2
X	4613766	X_4613766_INS [dm3] X_4719733_INS [dm6]	A	AG	1.836e^-72	7.575e^-69	INTRON Proc-R
X	4645169	X_4645169_DEL [dm3] X_4751136_DEL [dm6]	TTTTTTGTCCATCTGGTTTT...	T	1.836e^-72	7.575e^-69	INTERGENIC
X	4645193	X_4645193_SNP [dm3] X_4751160_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTERGENIC
X	4645200	X_4645200_SNP [dm3] X_4751167_SNP [dm6]	C	A	1.836e^-72	7.575e^-69	INTERGENIC
X	5213783	X_5213783_SNP [dm3] X_5319750_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING Rnp4F DOWNSTREAM Sas10	TF binding site mE1_TFBS_chinmo
X	5446819	X_5446819_SNP [dm3] X_5552786_SNP [dm6]	A	G	1.836e^-72	7.575e^-69	INTRON Vsx2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Kr
X	6532998	X_6532998_SNP [dm3] X_6638965_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	INTRON pigs
X	7646496	X_7646496_SNP [dm3] X_7752463_SNP [dm6]	A	C	1.836e^-72	7.575e^-69	INTERGENIC
X	7646673	X_7646673_SNP [dm3] X_7752640_SNP [dm6]	G	A	1.836e^-72	7.575e^-69	INTERGENIC
X	7756386	X_7756386_SNP [dm3] X_7862353_SNP [dm6]	C	G	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	7756542	X_7756542_SNP [dm3] X_7862509_SNP [dm6]	G	C	1.836e^-72	7.575e^-69	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	8402119	X_8402119_SNP [dm3] X_8508086_SNP [dm6]	T	C	1.836e^-72	7.575e^-69	INTRON CG33181
X	8835411	X_8835411_SNP [dm3] X_8941378_SNP [dm6]	T	A	1.836e^-72	7.575e^-69	INTRON rdgA
X	9735251	X_9735251_SNP [dm3] X_9841218_SNP [dm6]	G	T	1.836e^-72	7.575e^-69	INTRON CG32698
X	9740201	X_9740201_SNP [dm3] X_9846168_SNP [dm6]	C	T	1.836e^-72	7.575e^-69	SYNONYMOUS_CODING CG32698
X	14089885	X_14089885_SNP [dm3] X_14195852_SNP [dm6]	T	C	2.576e^-70	1.057e^-66	SYNONYMOUS_CODING yl	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
X	18828251	X_18828251_SNP [dm3] X_18934218_SNP [dm6]	C	T	2.576e^-70	1.057e^-66	INTRON CG43759
2L	12207777	2L_12207777_SNP [dm3] 2L_12207777_SNP [dm6]	C	T	9.611e^-63	3.562e^-59	UTR_5_PRIME CG31759 UPSTREAM CG31759 INTRON aret
2L	13233875	2L_13233875_SNP [dm3] 2L_13233875_SNP [dm6]	T	C	9.611e^-63	3.562e^-59	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	13233925	2L_13233925_SNP [dm3] 2L_13233925_SNP [dm6]	G	T	9.611e^-63	3.562e^-59	UTR_3_PRIME CG15479 DOWNSTREAM Prosalpha6T	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	16649952	2L_16649952_SNP [dm3] 2L_16649952_SNP [dm6]	A	C	9.611e^-63	3.562e^-59	INTRON CG42389
2L	2002865	2L_2002865_SNP [dm3] 2L_2002865_SNP [dm6]	G	C	9.611e^-63	3.562e^-59	SYNONYMOUS_CODING CG33543 INTRON CR43464
2L	4179637	2L_4179637_INS [dm3] 2L_4179637_INS [dm6]	T	TT	9.611e^-63	3.562e^-59	INTERGENIC	TF binding site mE1_TFBS_GATAe mE1_TFBS_HSA
2L	4180200	2L_4180200_SNP [dm3] 2L_4180200_SNP [dm6]	T	G	9.611e^-63	3.562e^-59	INTERGENIC
2L	4180462	2L_4180462_SNP [dm3] 2L_4180462_SNP [dm6]	G	T	9.611e^-63	3.562e^-59	INTERGENIC
2L	4181024	2L_4181024_SNP [dm3] 2L_4181024_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	INTERGENIC
2L	8906199	2L_8906199_SNP [dm3] 2L_8906199_SNP [dm6]	C	T	9.611e^-63	3.562e^-59	INTRON CG34398
2R	10255162	2R_10255162_SNP [dm3] 2R_14367657_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	UPSTREAM CG34443 DOWNSTREAM CG34184 INTRON CG34442
2R	10271942	2R_10271942_SNP [dm3] 2R_14384437_SNP [dm6]	T	G	9.611e^-63	3.562e^-59	INTRON Dh44-R1	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	10288782	2R_10288782_SNP [dm3] 2R_14401277_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTERGENIC
2R	12048214	2R_12048214_SNP [dm3] 2R_16160709_SNP [dm6]	T	C	9.611e^-63	3.562e^-59	INTRON lbk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18151033	2R_18151033_SNP [dm3] 2R_22263528_SNP [dm6]	A	T	9.611e^-63	3.562e^-59	INTRON dve
2R	18151052	2R_18151052_SNP [dm3] 2R_22263547_SNP [dm6]	T	A	9.611e^-63	3.562e^-59	INTRON dve
2R	18151058	2R_18151058_MNP [dm3] 2R_22263553_MNP [dm6]	TTT	AAA	9.611e^-63	3.562e^-59	INTRON dve
2R	18151062	2R_18151062_INS [dm3] 2R_22263557_INS [dm6]	A	AGTACT	9.611e^-63	3.562e^-59	INTRON dve
2R	18151065	2R_18151065_SNP [dm3] 2R_22263560_SNP [dm6]	G	T	9.611e^-63	3.562e^-59	INTRON dve
2R	20487376	2R_20487376_SNP [dm3] 2R_24599853_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	UPSTREAM CG3548 & 1 other DOWNSTREAM CG13587 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	13643924	3L_13643924_SNP [dm3] 3L_13650824_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	INTRON bru-3
3L	15129505	3L_15129505_SNP [dm3] 3L_15136405_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	UPSTREAM CG12316 INTRON CG12316	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens
3L	17163383	3L_17163383_INS [dm3] 3L_17170283_INS [dm6]	T	TTGGCGGT	9.611e^-63	3.562e^-59	INTRON Rbp6
3L	18842165	3L_18842165_SNP [dm3] 3L_18849065_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTERGENIC	TF binding site mE1_TFBS_cad
3L	18842169	3L_18842169_SNP [dm3] 3L_18849069_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	INTERGENIC	TF binding site mE1_TFBS_cad
3L	19391405	3L_19391405_SNP [dm3] 3L_19398305_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	INTRON CG32206
3L	22971847	3L_22971847_SNP [dm3] 3L_22978747_SNP [dm6]	A	T	9.611e^-63	3.562e^-59	INTERGENIC
3L	4354786	3L_4354786_SNP [dm3] 3L_4354786_SNP [dm6]	C	A	9.611e^-63	3.562e^-59	INTRON Cip4
3L	6904577	3L_6904577_SNP [dm3] 3L_6911477_SNP [dm6]	C	T	9.611e^-63	3.562e^-59	DOWNSTREAM Prat2 INTERGENIC
3L	7772408	3L_7772408_SNP [dm3] 3L_7779308_SNP [dm6]	C	T	9.611e^-63	3.562e^-59	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	8584409	3L_8584409_SNP [dm3] 3L_8591309_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	SYNONYMOUS_CODING CG43078 INTRON CG43078	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	14161436	3R_14161436_SNP [dm3] 3R_18335714_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTRON CG15803
3R	17690098	3R_17690098_SNP [dm3] 3R_21864376_SNP [dm6]	T	C	9.611e^-63	3.562e^-59	UPSTREAM lsn INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25909110	3R_25909110_SNP [dm3] 3R_30083388_SNP [dm6]	T	G	9.611e^-63	3.562e^-59	INTRON sima
3R	7070948	3R_7070948_SNP [dm3] 3R_11245226_SNP [dm6]	A	G	9.611e^-63	3.562e^-59	SYNONYMOUS_CODING CG5214	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7979972	3R_7979972_SNP [dm3] 3R_12154250_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTRON dpr15
3R	9983128	3R_9983128_DEL [dm3] 3R_14157406_DEL [dm6]	TTA	T	9.611e^-63	3.562e^-59	UTR_5_PRIME CG31533 DOWNSTREAM CG31327
X	11935572	X_11935572_SNP [dm3] X_12041539_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTERGENIC
X	18376886	X_18376886_SNP [dm3] X_18482853_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTRON Hayan
X	8541229	X_8541229_DEL [dm3] X_8647196_DEL [dm6]	TTGCGAT	T	9.611e^-63	3.562e^-59	INTRON oc
X	9623555	X_9623555_SNP [dm3] X_9729522_SNP [dm6]	T	C	9.611e^-63	3.562e^-59	UPSTREAM Sp1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9735462	X_9735462_SNP [dm3] X_9841429_SNP [dm6]	G	A	9.611e^-63	3.562e^-59	INTRON CG32698
2L	12604948	2L_12604948_SNP [dm3] 2L_12604948_SNP [dm6]	T	A	3.997e^-62	1.455e^-58	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	10805708	3L_10805708_SNP [dm3] 3L_10812608_SNP [dm6]	T	A	3.997e^-62	1.455e^-58	INTERGENIC
3L	10844495	3L_10844495_SNP [dm3] 3L_10851395_SNP [dm6]	A	T	3.997e^-62	1.455e^-58	UPSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
3R	14700627	3R_14700627_SNP [dm3] 3R_18874905_SNP [dm6]	G	A	3.997e^-62	1.455e^-58	UPSTREAM CG14298 INTERGENIC
X	9325686	X_9325686_SNP [dm3] X_9431653_SNP [dm6]	G	A	3.997e^-62	1.455e^-58	INTRON mgl
X	9325820	X_9325820_DEL [dm3] X_9431787_DEL [dm6]	GTTTTTGGATGG...	G	3.997e^-62	1.455e^-58	INTRON mgl
X	9326006	X_9326006_SNP [dm3] X_9431973_SNP [dm6]	G	C	3.997e^-62	1.455e^-58	INTRON mgl
X	9326072	X_9326072_SNP [dm3] X_9432039_SNP [dm6]	C	T	3.997e^-62	1.455e^-58	INTRON mgl
3L	11002928	3L_11002928_SNP [dm3] 3L_11009828_SNP [dm6]	C	T	5.222e^-56	1.896e^-52	UPSTREAM klu INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_Trl
2L	6694974	2L_6694974_SNP [dm3] 2L_6694974_SNP [dm6]	C	T	1.512e^-55	5.479e^-52	INTRON Tsp
2R	9337222	2R_9337222_SNP [dm3] 2R_13449717_SNP [dm6]	T	C	4.916e^-55	1.777e^-51	UPSTREAM cnn & 1 other INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_inv mE1_TFBS_Trl
2L	2301921	2L_2301921_SNP [dm3] 2L_2301921_SNP [dm6]	G	T	1.711e^-54	6.171e^-51	INTERGENIC
2L	10687655	2L_10687655_SNP [dm3] 2L_10687655_SNP [dm6]	A	T	1.154e^-48	4.099e^-45	UPSTREAM CG7296 INTERGENIC
2L	11291686	2L_11291686_SNP [dm3] 2L_11291686_SNP [dm6]	C	G	1.154e^-48	4.099e^-45	UPSTREAM CR43409 INTERGENIC
3L	10839488	3L_10839488_SNP [dm3] 3L_10846388_SNP [dm6]	G	A	1.154e^-48	4.099e^-45	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Kr mE1_TFBS_Trl
3L	5402731	3L_5402731_SNP [dm3] 3L_5409631_SNP [dm6]	G	C	1.154e^-48	4.099e^-45	INTERGENIC
3L	8997432	3L_8997432_SNP [dm3] 3L_9004332_SNP [dm6]	G	A	1.154e^-48	4.099e^-45	UPSTREAM Doc3 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Trl
3R	3886805	3R_3886805_SNP [dm3] 3R_8061083_SNP [dm6]	T	A	1.154e^-48	4.099e^-45	INTRON mAChR-B	TF binding site mE1_TFBS_inv
X	16230156	X_16230156_INS [dm3] X_16336123_INS [dm6]	T	TAACTTTCGT	1.154e^-48	4.099e^-45	UPSTREAM Dsp1 INTRON Dsp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9207807	2L_9207807_SNP [dm3] 2L_9207807_SNP [dm6]	C	A	1.492e^-48	5.129e^-45	INTRON tai
3R	3238001	3R_3238001_INS [dm3] 3R_7412279_INS [dm6]	C	CATGCAATC	1.492e^-48	5.129e^-45	INTERGENIC
3R	3238036	3R_3238036_SNP [dm3] 3R_7412314_SNP [dm6]	C	T	1.492e^-48	5.129e^-45	INTERGENIC
3R	3266172	3R_3266172_SNP [dm3] 3R_7440450_SNP [dm6]	T	G	1.492e^-48	5.129e^-45	INTRON CG14598
3R	3266710	3R_3266710_SNP [dm3] 3R_7440988_SNP [dm6]	C	G	1.492e^-48	5.129e^-45	NON_SYNONYMOUS_CODING CG14598
3R	3275269	3R_3275269_SNP [dm3] 3R_7449547_SNP [dm6]	C	T	1.492e^-48	5.129e^-45	INTERGENIC
3R	3275312	3R_3275312_SNP [dm3] 3R_7449590_SNP [dm6]	G	T	1.492e^-48	5.129e^-45	INTERGENIC
3R	3275435	3R_3275435_SNP [dm3] 3R_7449713_SNP [dm6]	A	C	1.492e^-48	5.129e^-45	INTERGENIC
3R	3275544	3R_3275544_SNP [dm3] 3R_7449822_SNP [dm6]	G	A	1.492e^-48	5.129e^-45	INTERGENIC
3R	3275554	3R_3275554_SNP [dm3] 3R_7449832_SNP [dm6]	T	C	1.492e^-48	5.129e^-45	INTERGENIC
3R	3279989	3R_3279989_SNP [dm3] 3R_7454267_SNP [dm6]	G	T	1.492e^-48	5.129e^-45	INTERGENIC	TF binding site mE1_TFBS_inv
3R	3285546	3R_3285546_SNP [dm3] 3R_7459824_SNP [dm6]	C	T	1.492e^-48	5.129e^-45	INTERGENIC
3R	8894485	3R_8894485_SNP [dm3] 3R_13068763_SNP [dm6]	T	G	1.492e^-48	5.129e^-45	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sbb
X	18041695	X_18041695_SNP [dm3] X_18147662_SNP [dm6]	G	C	1.492e^-48	5.129e^-45	INTERGENIC
X	20469893	X_20469893_SNP [dm3] X_20598866_SNP [dm6]	T	G	1.492e^-48	5.129e^-45	INTRON RunxA
2L	20148623	2L_20148623_SNP [dm3] 2L_20148623_SNP [dm6]	A	C	1.835e^-48	6.012e^-45	INTERGENIC
2L	20173926	2L_20173926_INS [dm3] 2L_20173926_INS [dm6]	A	AAATGT	1.835e^-48	6.012e^-45	INTERGENIC	transposable element FlyBase
2L	20173928	2L_20173928_SNP [dm3] 2L_20173928_SNP [dm6]	G	T	1.835e^-48	6.012e^-45	INTERGENIC	transposable element FlyBase
2L	21743656	2L_21743656_SNP [dm3] 2L_21743656_SNP [dm6]	C	A	1.835e^-48	6.012e^-45	INTRON step
2R	13491490	2R_13491490_SNP [dm3] 2R_17603985_SNP [dm6]	A	G	1.835e^-48	6.012e^-45	UTR_3_PRIME lack UPSTREAM tRNA:CR30231 DOWNSTREAM tRNA:CR30333 & 2 others
2R	13730455	2R_13730455_SNP [dm3] 2R_17842950_SNP [dm6]	T	C	1.835e^-48	6.012e^-45	UPSTREAM olf186-F DOWNSTREAM grh INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	15250568	2R_15250568_SNP [dm3] 2R_19363063_SNP [dm6]	C	G	1.835e^-48	6.012e^-45	UTR_3_PRIME CG11961 UPSTREAM CG10051 DOWNSTREAM CG11961
2R	15467878	2R_15467878_SNP [dm3] 2R_19580373_SNP [dm6]	A	G	1.835e^-48	6.012e^-45	INTRON sm
2R	16957732	2R_16957732_SNP [dm3] 2R_21070227_SNP [dm6]	G	T	1.835e^-48	6.012e^-45	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2R	16957771	2R_16957771_SNP [dm3] 2R_21070266_SNP [dm6]	T	A	1.835e^-48	6.012e^-45	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2R	16957772	2R_16957772_SNP [dm3] 2R_21070267_SNP [dm6]	A	T	1.835e^-48	6.012e^-45	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2R	18495745	2R_18495745_SNP [dm3] 2R_22608240_SNP [dm6]	G	A	1.835e^-48	6.012e^-45	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18495749	2R_18495749_SNP [dm3] 2R_22608244_SNP [dm6]	C	A	1.835e^-48	6.012e^-45	UPSTREAM Vps20 DOWNSTREAM snoRNA:Psi28S-1175b & 3 others INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	18984608	2R_18984608_INS [dm3] 2R_23097085_INS [dm6]	C	CGACCATGCCC...	1.835e^-48	6.012e^-45	INTERGENIC	TF binding site BDTNP1_TFBS_hb
2R	19947378	2R_19947378_SNP [dm3] 2R_24059855_SNP [dm6]	C	T	1.835e^-48	6.012e^-45	UPSTREAM RpL12 DOWNSTREAM eIF-5A EXON CR44814	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Ubx
2R	6051271	2R_6051271_DEL [dm3] 2R_10163766_DEL [dm6]	TTTGCT	T	1.835e^-48	6.012e^-45	INTRON KCNQ
2R	7398480	2R_7398480_SNP [dm3] 2R_11510975_SNP [dm6]	A	G	1.835e^-48	6.012e^-45	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7616107	2R_7616107_SNP [dm3] 2R_11728602_SNP [dm6]	A	C	1.835e^-48	6.012e^-45	INTERGENIC
2R	9527663	2R_9527663_SNP [dm3] 2R_13640158_SNP [dm6]	G	T	1.835e^-48	6.012e^-45	INTRON fas
2R	9527794	2R_9527794_SNP [dm3] 2R_13640289_SNP [dm6]	G	A	1.835e^-48	6.012e^-45	INTRON fas
3L	10898924	3L_10898924_INS [dm3] 3L_10905824_INS [dm6]	G	GGCCG	1.835e^-48	6.012e^-45	INTERGENIC
3L	16748555	3L_16748555_INS [dm3] 3L_16755455_INS [dm6]	G	GG	1.835e^-48	6.012e^-45	UPSTREAM CG42852 INTERGENIC
3L	9830341	3L_9830341_INS [dm3] 3L_9837241_INS [dm6]	G	GCTG	1.835e^-48	6.012e^-45	CODON_INSERTION Cdk8 UPSTREAM I-2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16722657	2L_16722657_SNP [dm3] 2L_16722657_SNP [dm6]	A	C	2.227e^-48	7.025e^-45	DOWNSTREAM VhaSFD & 1 other INTERGENIC
2L	7067513	2L_7067513_SNP [dm3] 2L_7067513_SNP [dm6]	G	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067587	2L_7067587_SNP [dm3] 2L_7067587_SNP [dm6]	T	G	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067591	2L_7067591_SNP [dm3] 2L_7067591_SNP [dm6]	C	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067595	2L_7067595_SNP [dm3] 2L_7067595_SNP [dm6]	T	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067601	2L_7067601_SNP [dm3] 2L_7067601_SNP [dm6]	C	T	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067603	2L_7067603_MNP [dm3] 2L_7067603_MNP [dm6]	AATA	TTGT	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067614	2L_7067614_SNP [dm3] 2L_7067614_SNP [dm6]	C	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067618	2L_7067618_SNP [dm3] 2L_7067618_SNP [dm6]	C	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067619	2L_7067619_SNP [dm3] 2L_7067619_SNP [dm6]	T	C	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067622	2L_7067622_SNP [dm3] 2L_7067622_SNP [dm6]	C	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7067623	2L_7067623_SNP [dm3] 2L_7067623_SNP [dm6]	C	A	2.227e^-48	7.025e^-45	UPSTREAM CG11289 INTERGENIC
2L	7861396	2L_7861396_SNP [dm3] 2L_7861396_SNP [dm6]	T	C	2.227e^-48	7.025e^-45	UPSTREAM TwdlE INTERGENIC
2R	14766230	2R_14766230_SNP [dm3] 2R_18878725_SNP [dm6]	G	C	2.227e^-48	7.025e^-45	INTRON sano	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	6436257	2R_6436257_DEL [dm3] 2R_10548752_DEL [dm6]	GATGCGG	G	2.227e^-48	7.025e^-45	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	9527709	2R_9527709_SNP [dm3] 2R_13640204_SNP [dm6]	T	C	2.227e^-48	7.025e^-45	INTRON fas
3L	8017979	3L_8017979_SNP [dm3] 3L_8024879_SNP [dm6]	A	T	2.227e^-48	7.025e^-45	INTRON nmo	TF binding site BDTNP1_TFBS_dl
3R	11343920	3R_11343920_SNP [dm3] 3R_15518198_SNP [dm6]	A	C	2.227e^-48	7.025e^-45	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	10263489	X_10263489_DEL [dm3] X_10369456_DEL [dm6]	CGC	C	2.227e^-48	7.025e^-45	INTRON CG17841
2R	10186551	2R_10186551_DEL [dm3] 2R_14299046_DEL [dm6]	CACCGCC	C	2.293e^-48	7.192e^-45	UTR_3_PRIME Ih DOWNSTREAM Ih
3L	1649061	3L_1649061_DEL [dm3] 3L_1649061_DEL [dm6]	CTGAATCCGAATC...	C	2.293e^-48	7.192e^-45	UTR_5_PRIME CG13920 UPSTREAM CG13920 DOWNSTREAM Bro	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	14122918	3R_14122918_SNP [dm3] 3R_18297196_SNP [dm6]	G	A	2.293e^-48	7.192e^-45	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	11870394	2L_11870394_DEL [dm3] 2L_11870394_DEL [dm6]	TT	T	3.171e^-48	9.867e^-45	INTRON Pde1c
2R	17150441	2R_17150441_SNP [dm3] 2R_21262936_SNP [dm6]	G	A	3.171e^-48	9.867e^-45	INTRON Rgk3
2R	17718598	2R_17718598_SNP [dm3] 2R_21831093_SNP [dm6]	C	T	3.171e^-48	9.867e^-45	INTRON CG13492
3L	19461550	3L_19461550_SNP [dm3] 3L_19468450_SNP [dm6]	G	A	3.171e^-48	9.867e^-45	DOWNSTREAM CG32214 INTERGENIC	transposable element FlyBase
2L	160053	2L_160053_INS [dm3] 2L_160053_INS [dm6]	A	AAT	3.712e^-48	1.144e^-44	UTR_5_PRIME spen INTRON spen	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_Kr
2L	20205458	2L_20205458_INS [dm3] 2L_20205458_INS [dm6]	T	CACACCGCGTAG...	3.712e^-48	1.144e^-44	INTERGENIC
2L	5007161	2L_5007161_SNP [dm3] 2L_5007161_SNP [dm6]	A	C	3.712e^-48	1.144e^-44	UPSTREAM Rtnl1 INTRON Rtnl1
3L	9828601	3L_9828601_SNP [dm3] 3L_9835501_SNP [dm6]	C	T	3.712e^-48	1.144e^-44	INTRON I-2
X	14760276	X_14760276_INS [dm3] X_14866243_INS [dm6]	T	TT	3.712e^-48	1.144e^-44	UTR_5_PRIME CG9518 INTRON Flo2
2L	20483619	2L_20483619_SNP [dm3] 2L_20483619_SNP [dm6]	T	A	4.350e^-48	1.301e^-44	INTRON CR44980	TF binding site BDTNP1_TFBS_twi
2L	21827069	2L_21827069_SNP [dm3] 2L_21827069_SNP [dm6]	A	T	4.350e^-48	1.301e^-44	INTERGENIC	transposable element FlyBase
2L	2799153	2L_2799153_SNP [dm3] 2L_2799153_SNP [dm6]	A	C	4.350e^-48	1.301e^-44	DOWNSTREAM CR43821 INTRON Syt1	TF binding site BDTNP1_TFBS_dl
2L	5513407	2L_5513407_INS [dm3] 2L_5513407_INS [dm6]	C	CC	4.350e^-48	1.301e^-44	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2R	10010882	2R_10010882_INS [dm3] 2R_14123377_INS [dm6]	A	AA	4.350e^-48	1.301e^-44	INTRON Prosap	TF binding site mE1_TFBS_inv
2R	10257485	2R_10257485_SNP [dm3] 2R_14369980_SNP [dm6]	G	A	4.350e^-48	1.301e^-44	SYNONYMOUS_CODING CG34444 DOWNSTREAM CG34443 & 1 other
2R	16301533	2R_16301533_SNP [dm3] 2R_20414028_SNP [dm6]	G	T	4.350e^-48	1.301e^-44	INTERGENIC
2R	18712493	2R_18712493_SNP [dm3] 2R_22824970_SNP [dm6]	C	G	4.350e^-48	1.301e^-44	UPSTREAM CG30274 & 1 other INTRON CG42284
2R	19529370	2R_19529370_SNP [dm3] 2R_23641847_SNP [dm6]	T	A	4.350e^-48	1.301e^-44	INTRON retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	5340023	2R_5340023_SNP [dm3] 2R_9452518_SNP [dm6]	C	T	4.350e^-48	1.301e^-44	DOWNSTREAM CG33758 INTRON Camta
2R	9123880	2R_9123880_SNP [dm3] 2R_13236375_SNP [dm6]	G	A	4.350e^-48	1.301e^-44	SYNONYMOUS_CODING CG4676 DOWNSTREAM CG4679	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16055524	3R_16055524_SNP [dm3] 3R_20229802_SNP [dm6]	C	T	4.350e^-48	1.301e^-44	INTRON Nlg4	TF binding site mE1_TFBS_HSA
3R	22453593	3R_22453593_DEL [dm3] 3R_26627871_DEL [dm6]	AA	A	4.350e^-48	1.301e^-44	DOWNSTREAM TwdlK INTERGENIC
3R	26133950	3R_26133950_SNP [dm3] 3R_30308228_SNP [dm6]	G	C	4.350e^-48	1.301e^-44	INTRON hdc
X	2933926	X_2933926_SNP [dm3] X_3039893_SNP [dm6]	G	C	4.350e^-48	1.301e^-44	INTRON kirre
X	9623405	X_9623405_DEL [dm3] X_9729372_DEL [dm6]	ATA	G	4.350e^-48	1.301e^-44	UPSTREAM CR43498 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20174546	2L_20174546_SNP [dm3] 2L_20174546_SNP [dm6]	T	C	9.234e^-48	2.746e^-44	INTERGENIC	transposable element FlyBase
2R	21106172	2R_21106172_DEL [dm3] 2R_25218649_DEL [dm6]	TTTCT	A	9.234e^-48	2.746e^-44	INTRON CG9380	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	9862394	3R_9862394_SNP [dm3] 3R_14036672_SNP [dm6]	T	C	9.234e^-48	2.746e^-44	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_HSA
2L	13667411	2L_13667411_SNP [dm3] 2L_13667411_SNP [dm6]	C	A	1.194e^-47	3.504e^-44	INTRON CG18507
3L	7742443	3L_7742443_SNP [dm3] 3L_7749343_SNP [dm6]	G	T	1.194e^-47	3.504e^-44	UTR_3_PRIME CG13685 INTRON CG32373
3R	22795597	3R_22795597_SNP [dm3] 3R_26969875_SNP [dm6]	G	T	1.194e^-47	3.504e^-44	INTRON CG5521
3R	2542261	3R_2542261_SNP [dm3] 3R_6716539_SNP [dm6]	C	T	1.194e^-47	3.504e^-44	INTRON pb	regulatory region REDfly_CRMs
3R	3236904	3R_3236904_SNP [dm3] 3R_7411182_SNP [dm6]	G	A	1.194e^-47	3.504e^-44	INTERGENIC
3R	5448700	3R_5448700_SNP [dm3] 3R_9622978_SNP [dm6]	G	T	1.194e^-47	3.504e^-44	UTR_5_PRIME CG8312 INTRON CG8312
X	12284903	X_12284903_INS [dm3] X_12390870_INS [dm6]	T	TTTTT	1.194e^-47	3.504e^-44	INTERGENIC
2R	10456244	2R_10456244_SNP [dm3] 2R_14568739_SNP [dm6]	T	A	1.782e^-47	5.192e^-44	INTRON ttv
3L	15386895	3L_15386895_SNP [dm3] 3L_15393795_SNP [dm6]	C	A	1.782e^-47	5.192e^-44	INTERGENIC
X	19788081	X_19788081_INS [dm3] X_19894048_INS [dm6]	T	TGTCGTT	1.782e^-47	5.192e^-44	INTRON Hers	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	2214175	X_2214175_INS [dm3] X_2320142_INS [dm6]	G	GCTGAG	1.782e^-47	5.192e^-44	INTRON phl	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	20034793	2L_20034793_SNP [dm3] 2L_20034793_SNP [dm6]	G	T	2.537e^-47	7.261e^-44	INTRON sNPF
2L	20171341	2L_20171341_SNP [dm3] 2L_20171341_SNP [dm6]	T	C	2.537e^-47	7.261e^-44	INTERGENIC	transposable element FlyBase
2R	10175147	2R_10175147_SNP [dm3] 2R_14287642_SNP [dm6]	C	T	2.537e^-47	7.261e^-44	UPSTREAM Ih INTRON Ih
2R	10370597	2R_10370597_SNP [dm3] 2R_14483092_SNP [dm6]	C	A	2.537e^-47	7.261e^-44	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	12166773	2R_12166773_SNP [dm3] 2R_16279268_SNP [dm6]	C	T	2.537e^-47	7.261e^-44	UPSTREAM cato & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	2497301	2R_2497301_SNP [dm3] 2R_6609796_SNP [dm6]	A	C	2.537e^-47	7.261e^-44	UPSTREAM jing INTRON jing	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	9602520	2R_9602520_SNP [dm3] 2R_13715015_SNP [dm6]	C	G	2.537e^-47	7.261e^-44	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	9602541	2R_9602541_SNP [dm3] 2R_13715036_SNP [dm6]	C	T	2.537e^-47	7.261e^-44	INTRON fas	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	4605695	3L_4605695_SNP [dm3] 3L_4605695_SNP [dm6]	G	T	2.537e^-47	7.261e^-44	INTRON Src64B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	9862858	3R_9862858_SNP [dm3] 3R_14037136_SNP [dm6]	A	G	2.537e^-47	7.261e^-44	UPSTREAM CG9922 INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10239958	3L_10239958_SNP [dm3] 3L_10246858_SNP [dm6]	T	C	2.970e^-47	8.471e^-44	DOWNSTREAM CR44540 EXON CR44539	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA
3L	17695532	3L_17695532_SNP [dm3] 3L_17702432_SNP [dm6]	A	T	2.970e^-47	8.471e^-44	INTRON Ccn
X	2799560	X_2799560_SNP [dm3] X_2905527_SNP [dm6]	T	A	3.480e^-47	9.908e^-44	INTRON kirre
2L	2812391	2L_2812391_SNP [dm3] 2L_2812391_SNP [dm6]	T	A	7.387e^-47	2.096e^-43	UPSTREAM CG2964 DOWNSTREAM daw INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	3953888	3L_3953888_SNP [dm3] 3L_3953888_SNP [dm6]	C	G	7.387e^-47	2.096e^-43	DOWNSTREAM CG12605 INTERGENIC
2R	12355191	2R_12355191_SNP [dm3] 2R_16467686_SNP [dm6]	A	G	8.561e^-47	2.412e^-43	UPSTREAM CheB53b DOWNSTREAM CheB53a INTERGENIC
2R	17577382	2R_17577382_SNP [dm3] 2R_21689877_SNP [dm6]	C	G	8.561e^-47	2.412e^-43	DOWNSTREAM Tim10 & 1 other INTRON CG10307	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	2371363	2R_2371363_SNP [dm3] 2R_6483858_SNP [dm6]	T	C	8.561e^-47	2.412e^-43	INTERGENIC	transposable element FlyBase
3R	6465209	3R_6465209_DEL [dm3] 3R_10639487_DEL [dm6]	TT	T	8.561e^-47	2.412e^-43	UTR_5_PRIME hth INTRON CR44018	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2L	16634417	2L_16634417_SNP [dm3] 2L_16634417_SNP [dm6]	T	G	1.002e^-46	2.809e^-43	INTRON CG42389
X	14343945	X_14343945_DEL [dm3] X_14449912_DEL [dm6]	ATCGCAAATATGGTA...	A	1.002e^-46	2.809e^-43	INTRON dpr8
X	22042678	X_22042678_SNP [dm3] X_22640842_SNP [dm6]	G	T	1.002e^-46	2.809e^-43	INTERGENIC	transposable element FlyBase
2R	11064235	2R_11064235_SNP [dm3] 2R_15176730_SNP [dm6]	T	C	1.012e^-46	2.831e^-43	INTRON igl
2R	17028056	2R_17028056_SNP [dm3] 2R_21140551_SNP [dm6]	T	C	1.174e^-46	3.252e^-43	UPSTREAM Magi INTRON Magi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
2R	18582535	2R_18582535_SNP [dm3] 2R_22695030_SNP [dm6]	C	G	1.174e^-46	3.252e^-43	SYNONYMOUS_CODING robo	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	19265162	2R_19265162_SNP [dm3] 2R_23377639_SNP [dm6]	T	C	1.174e^-46	3.252e^-43	UPSTREAM Golgin245 & 1 other DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	19265189	2R_19265189_SNP [dm3] 2R_23377666_SNP [dm6]	T	C	1.174e^-46	3.252e^-43	UPSTREAM Golgin245 & 1 other DOWNSTREAM CG13551 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	2494041	2R_2494041_SNP [dm3] 2R_6606536_SNP [dm6]	G	C	1.174e^-46	3.252e^-43	INTRON jing	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5445437	3R_5445437_INS [dm3] 3R_9619715_INS [dm6]	T	TTT	1.174e^-46	3.252e^-43	INTRON CG8312
2R	8649271	2R_8649271_SNP [dm3] 2R_12761766_SNP [dm6]	A	C	2.294e^-46	6.340e^-43	UPSTREAM Nacalpha & 1 other INTERGENIC
3L	16873261	3L_16873261_INS [dm3] 3L_16880161_INS [dm6]	G	GATGATG	9.053e^-44	2.494e^-40	DOWNSTREAM CG32170 INTRON Lmpt
3L	6973911	3L_6973911_INS [dm3] 3L_6980811_INS [dm6]	T	TA	9.053e^-44	2.494e^-40	UPSTREAM Galphai INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	16215329	3R_16215329_SNP [dm3] 3R_20389607_SNP [dm6]	A	T	1.009e^-40	2.774e^-37	INTRON Gfrl
2L	10613800	2L_10613800_SNP [dm3] 2L_10613800_SNP [dm6]	C	T	1.249e^-40	3.429e^-37	INTRON Trim9
2L	7930969	2L_7930969_SNP [dm3] 2L_7930969_SNP [dm6]	G	A	1.484e^-40	4.027e^-37	INTRON Snoo
2R	12900437	2R_12900437_DEL [dm3] 2R_17012932_DEL [dm6]	AAA	A	1.484e^-40	4.027e^-37	INTRON Ehbp1
2R	15198473	2R_15198473_SNP [dm3] 2R_19310968_SNP [dm6]	T	C	1.484e^-40	4.027e^-37	UPSTREAM EndoB DOWNSTREAM Rgk1 INTERGENIC
2R	21139712	2R_21139712_SNP [dm3] 2R_25252189_SNP [dm6]	C	G	1.484e^-40	4.027e^-37	INTRON CG9380 & 1 other	transposable element FlyBase
2R	21139715	2R_21139715_SNP [dm3] 2R_25252192_SNP [dm6]	T	C	1.484e^-40	4.027e^-37	INTRON CG9380 & 1 other	transposable element FlyBase
2R	5663854	2R_5663854_DEL [dm3] 2R_9776349_DEL [dm6]	ATAATAATTTTCTA...	A	1.484e^-40	4.027e^-37	INTRON CG1688 EXON CR44207
3L	9466468	3L_9466468_INS [dm3] 3L_9473368_INS [dm6]	A	AACAGCAGCATCAACATCAA...	1.484e^-40	4.027e^-37	DOWNSTREAM CG44838	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2R	14082507	2R_14082507_SNP [dm3] 2R_18195002_SNP [dm6]	T	A	1.744e^-40	4.716e^-37	INTERGENIC
2R	14239911	2R_14239911_SNP [dm3] 2R_18352406_SNP [dm6]	A	C	1.744e^-40	4.716e^-37	INTRON sbb
X	11234363	X_11234363_SNP [dm3] X_11340330_SNP [dm6]	T	A	1.787e^-40	4.817e^-37	UTR_5_PRIME CG34348 UPSTREAM Kap3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
X	22143994	X_22143994_SNP [dm3] X_22742158_SNP [dm6]	G	T	1.787e^-40	4.817e^-37	INTRON CR44997	transposable element FlyBase
2L	12604967	2L_12604967_SNP [dm3] 2L_12604967_SNP [dm6]	T	C	2.178e^-40	5.811e^-37	INTRON nub	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	14590624	3L_14590624_SNP [dm3] 3L_14597524_SNP [dm6]	T	C	2.178e^-40	5.811e^-37	INTRON HGTX
3L	3716904	3L_3716904_SNP [dm3] 3L_3716904_SNP [dm6]	A	T	2.178e^-40	5.811e^-37	UTR_3_PRIME CG32264 DOWNSTREAM CG32264
X	8372626	X_8372626_SNP [dm3] X_8478593_SNP [dm6]	A	G	2.178e^-40	5.811e^-37	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
X	8372637	X_8372637_SNP [dm3] X_8478604_SNP [dm6]	G	A	2.178e^-40	5.811e^-37	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
X	8372641	X_8372641_SNP [dm3] X_8478608_SNP [dm6]	C	T	2.178e^-40	5.811e^-37	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2L	13948242	2L_13948242_SNP [dm3] 2L_13948242_SNP [dm6]	C	A	2.341e^-40	6.165e^-37	UPSTREAM CG16884 INTRON Ance-3
2L	7067608	2L_7067608_SNP [dm3] 2L_7067608_SNP [dm6]	A	C	2.341e^-40	6.165e^-37	UPSTREAM CG11289 INTERGENIC
2L	7067610	2L_7067610_MNP [dm3] 2L_7067610_MNP [dm6]	ATA	GCT	2.341e^-40	6.165e^-37	UPSTREAM CG11289 INTERGENIC
2R	17718527	2R_17718527_DEL [dm3] 2R_21831022_DEL [dm6]	ACTATAGCAATGTGT...	A	2.341e^-40	6.165e^-37	INTRON CG13492
2R	8706091	2R_8706091_SNP [dm3] 2R_12818586_SNP [dm6]	C	T	2.341e^-40	6.165e^-37	INTERGENIC
2R	8706093	2R_8706093_SNP [dm3] 2R_12818588_SNP [dm6]	T	A	2.341e^-40	6.165e^-37	INTERGENIC
3L	8029662	3L_8029662_SNP [dm3] 3L_8036562_SNP [dm6]	A	G	2.341e^-40	6.165e^-37	INTRON nmo	TF binding site BDTNP1_TFBS_twi
3L	9194161	3L_9194161_SNP [dm3] 3L_9201061_SNP [dm6]	C	T	2.341e^-40	6.165e^-37	INTERGENIC
2L	3893141	2L_3893141_SNP [dm3] 2L_3893141_SNP [dm6]	A	C	2.735e^-40	7.190e^-37	INTRON capu
2L	4223414	2L_4223414_SNP [dm3] 2L_4223414_SNP [dm6]	G	A	3.047e^-40	7.984e^-37	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	20677524	2R_20677524_INS [dm3] 2R_24790001_INS [dm6]	A	ACATA	3.047e^-40	7.984e^-37	INTRON Reg-5
3L	10942262	3L_10942262_INS [dm3] 3L_10949162_INS [dm6]	T	TT	3.065e^-40	8.004e^-37	INTERGENIC
3R	26772549	3R_26772549_SNP [dm3] 3R_30946827_SNP [dm6]	A	C	3.065e^-40	8.004e^-37	INTERGENIC	TF binding site mE1_TFBS_bab1
2R	11612951	2R_11612951_SNP [dm3] 2R_15725446_SNP [dm6]	G	A	4.807e^-40	1.247e^-36	INTERGENIC
2R	12365529	2R_12365529_SNP [dm3] 2R_16478024_SNP [dm6]	C	T	4.807e^-40	1.247e^-36	INTERGENIC
2R	12441960	2R_12441960_SNP [dm3] 2R_16554455_SNP [dm6]	G	A	4.807e^-40	1.247e^-36	UPSTREAM Syn2 INTRON Syn2
3L	2759375	3L_2759375_SNP [dm3] 3L_2759375_SNP [dm6]	C	A	4.807e^-40	1.247e^-36	INTRON Mrtf
2L	12148476	2L_12148476_SNP [dm3] 2L_12148476_SNP [dm6]	A	C	5.706e^-40	1.464e^-36	INTRON CG31760
2L	13154131	2L_13154131_SNP [dm3] 2L_13154131_SNP [dm6]	C	A	5.706e^-40	1.464e^-36	INTERGENIC
3L	10842762	3L_10842762_SNP [dm3] 3L_10849662_SNP [dm6]	C	A	5.706e^-40	1.464e^-36	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10842763	3L_10842763_SNP [dm3] 3L_10849663_SNP [dm6]	C	G	5.706e^-40	1.464e^-36	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	10842772	3L_10842772_SNP [dm3] 3L_10849672_SNP [dm6]	T	C	5.706e^-40	1.464e^-36	DOWNSTREAM CR45169 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_HSA
3L	16338381	3L_16338381_SNP [dm3] 3L_16345281_SNP [dm6]	C	A	5.706e^-40	1.464e^-36	DOWNSTREAM CG4998 INTERGENIC
X	9268253	X_9268253_DEL [dm3] X_9374220_DEL [dm6]	AA	A	5.706e^-40	1.464e^-36	INTRON mgl
2L	6338463	2L_6338463_SNP [dm3] 2L_6338463_SNP [dm6]	A	T	8.397e^-40	2.127e^-36	UTR_5_PRIME Pez UPSTREAM Cpr & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	13596034	2R_13596034_SNP [dm3] 2R_17708529_SNP [dm6]	G	A	8.397e^-40	2.127e^-36	INTRON CG6424
2R	13596039	2R_13596039_SNP [dm3] 2R_17708534_SNP [dm6]	A	G	8.397e^-40	2.127e^-36	INTRON CG6424
2R	7322861	2R_7322861_SNP [dm3] 2R_11435356_SNP [dm6]	C	T	8.397e^-40	2.127e^-36	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	7322862	2R_7322862_SNP [dm3] 2R_11435357_SNP [dm6]	T	C	8.397e^-40	2.127e^-36	UPSTREAM CG7777 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_kn mE1_TFBS_Trl mE1_TFBS_ttk
2R	9527772	2R_9527772_SNP [dm3] 2R_13640267_SNP [dm6]	C	A	8.397e^-40	2.127e^-36	INTRON fas
3L	15328861	3L_15328861_SNP [dm3] 3L_15335761_SNP [dm6]	A	T	8.397e^-40	2.127e^-36	UPSTREAM Toll-6 INTRON CR43992	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	20015090	X_20015090_SNP [dm3] X_20121057_SNP [dm6]	G	A	8.397e^-40	2.127e^-36	INTERGENIC
2L	16722640	2L_16722640_SNP [dm3] 2L_16722640_SNP [dm6]	G	A	9.867e^-40	2.476e^-36	UTR_3_PRIME Cyt-c-p DOWNSTREAM VhaSFD
2L	21592464	2L_21592464_SNP [dm3] 2L_21592464_SNP [dm6]	G	A	9.867e^-40	2.476e^-36	INTERGENIC	TF binding site mE1_TFBS_cad transposable element FlyBase
2R	14935907	2R_14935907_SNP [dm3] 2R_19048402_SNP [dm6]	G	T	9.867e^-40	2.476e^-36	INTERGENIC
2R	18984318	2R_18984318_INS [dm3] 2R_23096795_INS [dm6]	G	GTTGGATAAAAATG...	9.867e^-40	2.476e^-36	INTERGENIC	TF binding site BDTNP1_TFBS_hb
3R	9753698	3R_9753698_SNP [dm3] 3R_13927976_SNP [dm6]	G	A	9.867e^-40	2.476e^-36	INTERGENIC
X	2327555	X_2327555_INS [dm3] X_2433522_INS [dm6]	T	TT	9.867e^-40	2.476e^-36	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
3R	26180104	3R_26180104_SNP [dm3] 3R_30354382_SNP [dm6]	G	T	1.011e^-39	2.530e^-36	INTRON hdc
X	19231724	X_19231724_DEL [dm3] X_19337691_DEL [dm6]	TG	A	1.011e^-39	2.530e^-36	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	20202760	2L_20202760_SNP [dm3] 2L_20202760_SNP [dm6]	C	A	1.232e^-39	3.008e^-36	INTERGENIC	transposable element FlyBase
2L	7492700	2L_7492700_SNP [dm3] 2L_7492700_SNP [dm6]	G	T	1.232e^-39	3.008e^-36	INTRON Ziz
2R	6449897	2R_6449897_SNP [dm3] 2R_10562392_SNP [dm6]	G	T	1.232e^-39	3.008e^-36	INTRON psq	TF binding site BDTNP1_TFBS_twi
3L	10930493	3L_10930493_SNP [dm3] 3L_10937393_SNP [dm6]	A	C	1.232e^-39	3.008e^-36	INTERGENIC
3L	13825222	3L_13825222_SNP [dm3] 3L_13832122_SNP [dm6]	A	T	1.232e^-39	3.008e^-36	INTERGENIC	transposable element FlyBase
3L	16735091	3L_16735091_SNP [dm3] 3L_16741991_SNP [dm6]	A	T	1.232e^-39	3.008e^-36	INTERGENIC
3L	2622985	3L_2622985_SNP [dm3] 3L_2622985_SNP [dm6]	A	G	1.232e^-39	3.008e^-36	INTRON Pxn	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	4685558	3L_4685558_SNP [dm3] 3L_4685558_SNP [dm6]	C	A	1.232e^-39	3.008e^-36	INTRON axo
3R	20922891	3R_20922891_SNP [dm3] 3R_25097169_SNP [dm6]	A	C	1.232e^-39	3.008e^-36	UPSTREAM CG33095 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	25851170	3R_25851170_SNP [dm3] 3R_30025448_SNP [dm6]	A	T	1.232e^-39	3.008e^-36	INTRON Axn
X	18223956	X_18223956_SNP [dm3] X_18329923_SNP [dm6]	T	C	1.232e^-39	3.008e^-36	INTRON CG6123
X	21886776	X_21886776_SNP [dm3] X_22484940_SNP [dm6]	A	G	1.232e^-39	3.008e^-36	INTRON Cp110	transposable element FlyBase
X	4714684	X_4714684_SNP [dm3] X_4820651_SNP [dm6]	C	T	1.232e^-39	3.008e^-36	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	8372521	X_8372521_SNP [dm3] X_8478488_SNP [dm6]	C	T	1.232e^-39	3.008e^-36	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
X	8372552	X_8372552_INS [dm3] X_8478519_INS [dm6]	T	TT	1.232e^-39	3.008e^-36	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
X	9107596	X_9107596_SNP [dm3] X_9213563_SNP [dm6]	T	G	1.232e^-39	3.008e^-36	INTERGENIC
3L	11955657	3L_11955657_SNP [dm3] 3L_11962557_SNP [dm6]	A	C	1.325e^-39	3.229e^-36	NON_SYNONYMOUS_CODING prc	TF binding site mE1_TFBS_chinmo
2L	12406972	2L_12406972_SNP [dm3] 2L_12406972_SNP [dm6]	A	G	1.393e^-39	3.273e^-36	DOWNSTREAM vir-1 INTRON vir-1
2L	20166205	2L_20166205_DEL [dm3] 2L_20166205_DEL [dm6]	CC	C	1.393e^-39	3.273e^-36	INTERGENIC	transposable element FlyBase
2L	20172879	2L_20172879_SNP [dm3] 2L_20172879_SNP [dm6]	A	T	1.393e^-39	3.273e^-36	INTERGENIC	transposable element FlyBase
2L	4936979	2L_4936979_SNP [dm3] 2L_4936979_SNP [dm6]	A	T	1.393e^-39	3.273e^-36	UPSTREAM Sgs1 & 1 other INTERGENIC
2L	6468218	2L_6468218_SNP [dm3] 2L_6468218_SNP [dm6]	C	A	1.393e^-39	3.273e^-36	UPSTREAM CG9531 DOWNSTREAM mmy INTERGENIC
2R	18573790	2R_18573790_DEL [dm3] 2R_22686285_DEL [dm6]	TT	T	1.393e^-39	3.273e^-36	UTR_3_PRIME ppa	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10532016	3L_10532016_SNP [dm3] 3L_10538916_SNP [dm6]	T	A	1.393e^-39	3.273e^-36	INTRON A2bp1
3L	10532023	3L_10532023_SNP [dm3] 3L_10538923_SNP [dm6]	G	C	1.393e^-39	3.273e^-36	INTRON A2bp1
3L	10532025	3L_10532025_SNP [dm3] 3L_10538925_SNP [dm6]	A	T	1.393e^-39	3.273e^-36	INTRON A2bp1
3L	10532026	3L_10532026_SNP [dm3] 3L_10538926_SNP [dm6]	T	A	1.393e^-39	3.273e^-36	INTRON A2bp1
3L	10532032	3L_10532032_SNP [dm3] 3L_10538932_SNP [dm6]	G	A	1.393e^-39	3.273e^-36	INTRON A2bp1
3L	10532033	3L_10532033_SNP [dm3] 3L_10538933_SNP [dm6]	G	C	1.393e^-39	3.273e^-36	INTRON A2bp1
3R	17478234	3R_17478234_SNP [dm3] 3R_21652512_SNP [dm6]	G	T	1.393e^-39	3.273e^-36	INTRON E2f	TF binding site mE1_TFBS_HSA
3R	17478239	3R_17478239_SNP [dm3] 3R_21652517_SNP [dm6]	G	A	1.393e^-39	3.273e^-36	INTRON E2f	TF binding site mE1_TFBS_HSA
3R	25139199	3R_25139199_SNP [dm3] 3R_29313477_SNP [dm6]	C	T	1.393e^-39	3.273e^-36	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	25729818	3R_25729818_INS [dm3] 3R_29904096_INS [dm6]	T	TT	1.393e^-39	3.273e^-36	UPSTREAM CG15517 DOWNSTREAM CG31038 INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3R	3739242	3R_3739242_SNP [dm3] 3R_7913520_SNP [dm6]	G	T	1.393e^-39	3.273e^-36	UPSTREAM CG2678 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11839294	X_11839294_SNP [dm3] X_11945261_SNP [dm6]	A	T	1.393e^-39	3.273e^-36	INTRON cac
X	17958167	X_17958167_SNP [dm3] X_18064134_SNP [dm6]	A	T	1.393e^-39	3.273e^-36	UPSTREAM Sh & 1 other INTERGENIC
X	17958209	X_17958209_SNP [dm3] X_18064176_SNP [dm6]	T	C	1.393e^-39	3.273e^-36	UPSTREAM Sh & 1 other INTERGENIC
X	17958224	X_17958224_SNP [dm3] X_18064191_SNP [dm6]	T	A	1.393e^-39	3.273e^-36	UPSTREAM Sh & 1 other INTERGENIC
X	18223979	X_18223979_SNP [dm3] X_18329946_SNP [dm6]	A	G	1.393e^-39	3.273e^-36	INTRON CG6123
X	18223982	X_18223982_SNP [dm3] X_18329949_SNP [dm6]	T	A	1.393e^-39	3.273e^-36	INTRON CG6123
X	18224008	X_18224008_SNP [dm3] X_18329975_SNP [dm6]	C	A	1.393e^-39	3.273e^-36	INTRON CG6123
X	8372790	X_8372790_DEL [dm3] X_8478757_DEL [dm6]	TAATATAATC	A	1.393e^-39	3.273e^-36	UPSTREAM Cp36 DOWNSTREAM Cp7Fc INTRON CG33223	regulatory region REDfly_CRMs
2L	17648689	2L_17648689_SNP [dm3] 2L_17648689_SNP [dm6]	G	T	1.724e^-39	3.978e^-36	UTR_3_PRIME CadN
2L	21827068	2L_21827068_SNP [dm3] 2L_21827068_SNP [dm6]	C	G	1.724e^-39	3.978e^-36	INTERGENIC	transposable element FlyBase
2R	10248093	2R_10248093_DEL [dm3] 2R_14360588_DEL [dm6]	ATGT	A	1.724e^-39	3.978e^-36	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
2R	12042280	2R_12042280_SNP [dm3] 2R_16154775_SNP [dm6]	C	T	1.724e^-39	3.978e^-36	INTRON lbk	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_zfh1
2R	12709311	2R_12709311_SNP [dm3] 2R_16821806_SNP [dm6]	T	A	1.724e^-39	3.978e^-36	INTERGENIC
2R	16684710	2R_16684710_INS [dm3] 2R_20797205_INS [dm6]	T	TT	1.724e^-39	3.978e^-36	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	19635939	2R_19635939_SNP [dm3] 2R_23748416_SNP [dm6]	A	G	1.724e^-39	3.978e^-36	UTR_3_PRIME CG13560 DOWNSTREAM CG13560 & 1 other
2R	5221060	2R_5221060_SNP [dm3] 2R_9333555_SNP [dm6]	T	C	1.724e^-39	3.978e^-36	INTRON CG13954 & 1 other
2R	7060260	2R_7060260_SNP [dm3] 2R_11172755_SNP [dm6]	C	A	1.724e^-39	3.978e^-36	UPSTREAM CG13229 INTRON shn	TF binding site BDTNP1_TFBS_slp1
2R	8564524	2R_8564524_SNP [dm3] 2R_12677019_SNP [dm6]	A	G	1.724e^-39	3.978e^-36	UPSTREAM CG42708 INTRON CG42708
3L	12866411	3L_12866411_SNP [dm3] 3L_12873311_SNP [dm6]	G	A	1.724e^-39	3.978e^-36	INTERGENIC
3L	21759175	3L_21759175_DEL [dm3] 3L_21766075_DEL [dm6]	CT	C	1.724e^-39	3.978e^-36	INTRON Syn1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5593221	2L_5593221_SNP [dm3] 2L_5593221_SNP [dm6]	C	G	1.734e^-39	3.996e^-36	INTERGENIC
3R	21390117	3R_21390117_SNP [dm3] 3R_25564395_SNP [dm6]	T	C	1.947e^-39	4.475e^-36	INTRON msi
3R	3238030	3R_3238030_SNP [dm3] 3R_7412308_SNP [dm6]	A	T	1.947e^-39	4.475e^-36	INTERGENIC
2R	13995439	2R_13995439_SNP [dm3] 2R_18107934_SNP [dm6]	G	T	2.314e^-39	5.303e^-36	INTRON CG5756
2R	6674160	2R_6674160_SNP [dm3] 2R_10786655_SNP [dm6]	G	T	2.314e^-39	5.303e^-36	UPSTREAM CR44300 & 1 other INTRON CG33144	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	20326094	X_20326094_DEL [dm3] X_20455067_DEL [dm6]	TCTCT	T	2.719e^-39	6.222e^-36	INTRON CG32506
2L	20172687	2L_20172687_SNP [dm3] 2L_20172687_SNP [dm6]	T	A	2.786e^-39	6.367e^-36	INTERGENIC	transposable element FlyBase
2L	3572509	2L_3572509_SNP [dm3] 2L_3572509_SNP [dm6]	A	G	3.840e^-39	8.762e^-36	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	12300628	2L_12300628_SNP [dm3] 2L_12300628_SNP [dm6]	G	A	3.997e^-39	9.096e^-36	SPLICE_SITE_REGION aret INTRON aret	TF binding site mE1_TFBS_D mE1_TFBS_HSA
X	19231700	X_19231700_SNP [dm3] X_19337667_SNP [dm6]	C	G	3.997e^-39	9.096e^-36	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2R	12212282	2R_12212282_SNP [dm3] 2R_16324777_SNP [dm6]	T	G	4.750e^-39	1.079e^-35	UTR_3_PRIME CG4282 DOWNSTREAM Vha44
2L	18775323	2L_18775323_INS [dm3] 2L_18775323_INS [dm6]	G	GG	5.582e^-39	1.266e^-35	INTRON ham	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2L	10171317	2L_10171317_SNP [dm3] 2L_10171317_SNP [dm6]	C	T	5.639e^-39	1.278e^-35	INTRON CG44153
2L	12806935	2L_12806935_INS [dm3] 2L_12806935_INS [dm6]	T	TGT	7.493e^-39	1.686e^-35	DOWNSTREAM CR43818 INTERGENIC
2R	13998237	2R_13998237_SNP [dm3] 2R_18110732_SNP [dm6]	T	A	7.493e^-39	1.686e^-35	DOWNSTREAM CG34196 INTERGENIC
2R	18453008	2R_18453008_SNP [dm3] 2R_22565503_SNP [dm6]	T	A	7.493e^-39	1.686e^-35	INTRON dnr1
2R	6808307	2R_6808307_INS [dm3] 2R_10920802_INS [dm6]	A	ACAAA	7.493e^-39	1.686e^-35	INTERGENIC
X	10263547	X_10263547_SNP [dm3] X_10369514_SNP [dm6]	C	G	7.493e^-39	1.686e^-35	INTRON CG17841
2L	12588283	2L_12588283_SNP [dm3] 2L_12588283_SNP [dm6]	T	A	1.218e^-38	2.736e^-35	INTRON nub
2R	12314225	2R_12314225_SNP [dm3] 2R_16426720_SNP [dm6]	C	T	2.065e^-38	4.633e^-35	SYNONYMOUS_CODING Sema-2b	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13842019	2L_13842019_INS [dm3] 2L_13842019_INS [dm6]	G	GGG	7.139e^-36	1.597e^-32	UPSTREAM CG33307 DOWNSTREAM CG33306 INTRON CenG1A	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
X	16114779	X_16114779_DEL [dm3] X_16220746_DEL [dm6]	TATT	A	7.139e^-36	1.597e^-32	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	8894498	3R_8894498_SNP [dm3] 3R_13068776_SNP [dm6]	G	A	1.063e^-32	2.376e^-29	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sbb
2L	9386747	2L_9386747_SNP [dm3] 2L_9386747_SNP [dm6]	C	T	1.221e^-32	2.712e^-29	UPSTREAM Aldh INTRON Shawl
2R	10370621	2R_10370621_SNP [dm3] 2R_14483116_SNP [dm6]	C	T	1.221e^-32	2.712e^-29	INTRON L	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	16829696	2R_16829696_SNP [dm3] 2R_20942191_SNP [dm6]	T	G	1.221e^-32	2.712e^-29	INTERGENIC
2R	4331326	2R_4331326_SNP [dm3] 2R_8443821_SNP [dm6]	C	T	1.221e^-32	2.712e^-29	UPSTREAM Cyp4e2 INTERGENIC
2R	808502	2R_808502_SNP [dm3] 2R_4920997_SNP [dm6]	C	T	1.389e^-32	3.065e^-29	INTRON Ir41a	transposable element FlyBase
2R	809269	2R_809269_SNP [dm3] 2R_4921764_SNP [dm6]	A	C	1.389e^-32	3.065e^-29	INTRON Ir41a	transposable element FlyBase
2R	904073	2R_904073_SNP [dm3] 2R_5016568_SNP [dm6]	C	G	1.389e^-32	3.065e^-29	INTRON Ir41a
2R	946391	2R_946391_SNP [dm3] 2R_5058886_SNP [dm6]	A	G	1.389e^-32	3.065e^-29	INTERGENIC	transposable element FlyBase
X	2126690	X_2126690_INS [dm3] X_2232657_INS [dm6]	T	TTA	1.389e^-32	3.065e^-29	INTRON pcx	TF binding site mE1_TFBS_chinmo
2L	16638021	2L_16638021_SNP [dm3] 2L_16638021_SNP [dm6]	G	A	1.416e^-32	3.117e^-29	INTRON CG42389
3R	3352023	3R_3352023_SNP [dm3] 3R_7526301_SNP [dm6]	T	G	1.416e^-32	3.117e^-29	UPSTREAM alpha-Est4aPsi INTRON alpha-Est6
2L	5036860	2L_5036860_DEL [dm3] 2L_5036860_DEL [dm6]	AACAA	A	1.758e^-32	3.852e^-29	UTR_3_PRIME Cg25C UPSTREAM SP555 & 1 other	TF binding site mE1_TFBS_cad
2R	3193771	2R_3193771_SNP [dm3] 2R_7306266_SNP [dm6]	T	G	1.758e^-32	3.852e^-29	INTERGENIC
X	12239640	X_12239640_SNP [dm3] X_12345607_SNP [dm6]	A	G	1.758e^-32	3.852e^-29	INTERGENIC
3L	9727722	3L_9727722_DEL [dm3] 3L_9734622_DEL [dm6]	AA	A	1.952e^-32	4.267e^-29	UTR_3_PRIME CG42268 UPSTREAM mir-4986 & 1 other
X	10637451	X_10637451_DEL [dm3] X_10743418_DEL [dm6]	TT	T	1.952e^-32	4.267e^-29	INTRON CG32676	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sbb mE1_TFBS_Trl
2L	9628118	2L_9628118_SNP [dm3] 2L_9628118_SNP [dm6]	G	T	1.965e^-32	4.289e^-29	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	4223411	2L_4223411_SNP [dm3] 2L_4223411_SNP [dm6]	A	T	2.170e^-32	4.724e^-29	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	4321121	2R_4321121_SNP [dm3] 2R_8433616_SNP [dm6]	A	T	2.170e^-32	4.724e^-29	UPSTREAM Lcp1Psi DOWNSTREAM Lcp2 INTERGENIC
X	9096350	X_9096350_SNP [dm3] X_9202317_SNP [dm6]	T	A	3.125e^-32	6.793e^-29	UPSTREAM su_r_ INTERGENIC
3R	16898103	3R_16898103_INS [dm3] 3R_21072381_INS [dm6]	C	CC	3.249e^-32	7.053e^-29	INTRON r-l	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
2L	15476602	2L_15476602_SNP [dm3] 2L_15476602_SNP [dm6]	A	T	4.253e^-32	9.221e^-29	UTR_3_PRIME sna	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	6856351	2R_6856351_SNP [dm3] 2R_10968846_SNP [dm6]	G	A	4.882e^-32	1.053e^-28	INTERGENIC
2R	7046045	2R_7046045_SNP [dm3] 2R_11158540_SNP [dm6]	T	A	4.882e^-32	1.053e^-28	UPSTREAM shn INTRON CG13229
3R	14453764	3R_14453764_SNP [dm3] 3R_18628042_SNP [dm6]	C	T	4.882e^-32	1.053e^-28	DOWNSTREAM tRNA:CR31228 INTRON qin	TF binding site BDTNP1_TFBS_twi
X	15871928	X_15871928_INS [dm3] X_15977895_INS [dm6]	A	AA	4.882e^-32	1.053e^-28	DOWNSTREAM CG9170 & 1 other INTERGENIC
2L	11726164	2L_11726164_INS [dm3] 2L_11726164_INS [dm6]	C	CCCAGGAC	5.555e^-32	1.190e^-28	INTERGENIC
2L	8631488	2L_8631488_SNP [dm3] 2L_8631488_SNP [dm6]	T	A	5.555e^-32	1.190e^-28	INTRON Sema-1a	TF binding site mE1_TFBS_inv
2R	7004374	2R_7004374_INS [dm3] 2R_11116869_INS [dm6]	G	GGG	5.555e^-32	1.190e^-28	UPSTREAM luna DOWNSTREAM Cyp12d1-p INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	12404120	X_12404120_SNP [dm3] X_12510087_SNP [dm6]	G	T	5.555e^-32	1.190e^-28	INTRON CG2556
X	17888546	X_17888546_INS [dm3] X_17994513_INS [dm6]	T	TATTT	5.555e^-32	1.190e^-28	UTR_5_PRIME Sh INTRON Sh
3L	21945366	3L_21945366_SNP [dm3] 3L_21952266_SNP [dm6]	A	T	5.665e^-32	1.212e^-28	DOWNSTREAM CG7448 INTERGENIC
2L	1817028	2L_1817028_SNP [dm3] 2L_1817028_SNP [dm6]	G	T	7.030e^-32	1.498e^-28	INTERGENIC
2R	7594476	2R_7594476_SNP [dm3] 2R_11706971_SNP [dm6]	G	A	7.030e^-32	1.498e^-28	UPSTREAM CR45377 INTERGENIC
3R	20491224	3R_20491224_SNP [dm3] 3R_24665502_SNP [dm6]	G	T	7.030e^-32	1.498e^-28	INTRON slo	regulatory region REDfly_CRMs
X	12578212	X_12578212_DEL [dm3] X_12684179_DEL [dm6]	TT	T	8.720e^-32	1.855e^-28	DOWNSTREAM Smr INTERGENIC
2R	12697643	2R_12697643_SNP [dm3] 2R_16810138_SNP [dm6]	G	A	1.250e^-31	2.656e^-28	UPSTREAM CR44465 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	6718823	2R_6718823_SNP [dm3] 2R_10831318_SNP [dm6]	T	C	1.647e^-31	3.496e^-28	INTRON CG12344	TF binding site BDTNP1_TFBS_twi
2R	6140277	2R_6140277_SNP [dm3] 2R_10252772_SNP [dm6]	G	A	1.953e^-31	4.139e^-28	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2R	8900474	2R_8900474_SNP [dm3] 2R_13012969_SNP [dm6]	T	C	2.812e^-31	5.953e^-28	INTERGENIC
2R	2719713	2R_2719713_SNP [dm3] 2R_6832208_SNP [dm6]	A	T	3.051e^-31	6.451e^-28	UPSTREAM CG34215 INTRON CG15236
2R	9640405	2R_9640405_SNP [dm3] 2R_13752900_SNP [dm6]	G	T	3.185e^-31	6.715e^-28	INTERGENIC
2R	9640406	2R_9640406_SNP [dm3] 2R_13752901_SNP [dm6]	C	A	3.185e^-31	6.715e^-28	INTERGENIC
X	21343264	X_21343264_SNP [dm3] X_21472237_SNP [dm6]	A	G	3.472e^-31	7.311e^-28	INTERGENIC
2L	5248552	2L_5248552_SNP [dm3] 2L_5248552_SNP [dm6]	A	T	4.088e^-31	8.596e^-28	INTRON tkv
3L	24137856	3L_24137856_SNP [dm3] 3L_24144756_SNP [dm6]	T	A	4.881e^-31	1.025e^-27	INTRON Snap25
X	16278083	X_16278083_SNP [dm3] X_16384050_SNP [dm6]	T	C	5.972e^-31	1.253e^-27	UPSTREAM CG9992 INTRON CG9992	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	7724256	2R_7724256_SNP [dm3] 2R_11836751_SNP [dm6]	C	T	6.327e^-31	1.325e^-27	INTRON Sobp
3L	22107958	3L_22107958_SNP [dm3] 3L_22114858_SNP [dm6]	T	G	7.074e^-31	1.480e^-27	INTERGENIC
3R	25674526	3R_25674526_DEL [dm3] 3R_29848804_DEL [dm6]	AA	A	9.628e^-31	2.012e^-27	INTRON Cad99C	TF binding site mE1_TFBS_cad
2R	8695600	2R_8695600_SNP [dm3] 2R_12808095_SNP [dm6]	A	G	1.125e^-30	2.341e^-27	DOWNSTREAM CG17580 INTERGENIC
3L	15766783	3L_15766783_SNP [dm3] 3L_15773683_SNP [dm6]	C	T	1.125e^-30	2.341e^-27	INTERGENIC
3R	25612312	3R_25612312_INS [dm3] 3R_29786590_INS [dm6]	A	AAAGTAACTGTTTGCA...	1.125e^-30	2.341e^-27	INTRON kay
2L	13263233	2L_13263233_INS [dm3] 2L_13263233_INS [dm6]	A	AA	1.758e^-30	3.653e^-27	INTRON CG44085
X	8600025	X_8600025_SNP [dm3] X_8705992_SNP [dm6]	G	T	3.445e^-30	7.151e^-27	INTERGENIC
3R	15949151	3R_15949151_DEL [dm3] 3R_20123429_DEL [dm6]	CTGTGCTC	C	4.499e^-30	9.328e^-27	INTERGENIC
X	20016066	X_20016066_SNP [dm3] X_20122033_SNP [dm6]	A	C	5.555e^-30	1.150e^-26	UPSTREAM CG34331 INTERGENIC
3L	20972772	3L_20972772_DEL [dm3] 3L_20979672_DEL [dm6]	AA	A	7.860e^-30	1.625e^-26	DOWNSTREAM CR33283 INTERGENIC
2L	17397982	2L_17397982_INS [dm3] 2L_17397982_INS [dm6]	A	AAA	8.610e^-30	1.778e^-26	INTRON CLIP-190
3L	12638999	3L_12638999_SNP [dm3] 3L_12645899_SNP [dm6]	G	A	1.394e^-24	2.875e^-21	DOWNSTREAM CR32111 EXON CR32111
3L	23505156	3L_23505156_SNP [dm3] 3L_23512056_SNP [dm6]	C	G	1.463e^-24	3.013e^-21	INTERGENIC	transposable element FlyBase
X	3473453	X_3473453_SNP [dm3] X_3579420_SNP [dm6]	G	C	1.470e^-24	3.024e^-21	INTRON AstA-R1
2R	2387279	2R_2387279_SNP [dm3] 2R_6499774_SNP [dm6]	T	A	2.909e^-24	5.977e^-21	INTERGENIC
2R	17551542	2R_17551542_SNP [dm3] 2R_21664037_SNP [dm6]	G	C	3.205e^-24	6.576e^-21	UPSTREAM CG42362 & 1 other DOWNSTREAM CR44748 INTERGENIC
3R	20943009	3R_20943009_SNP [dm3] 3R_25117287_SNP [dm6]	T	A	3.252e^-24	6.664e^-21	DOWNSTREAM CG31510 INTRON CG31108
2R	10660237	2R_10660237_DEL [dm3] 2R_14772732_DEL [dm6]	TTAT	T	3.824e^-24	7.816e^-21	UTR_3_PRIME kn DOWNSTREAM BEAF-32
2R	2373434	2R_2373434_SNP [dm3] 2R_6485929_SNP [dm6]	G	A	3.824e^-24	7.816e^-21	INTERGENIC	transposable element FlyBase
2L	17593082	2L_17593082_SNP [dm3] 2L_17593082_SNP [dm6]	A	G	3.942e^-24	8.048e^-21	UPSTREAM CG6870 INTRON Sytalpha
3L	24321289	3L_24321289_SNP [dm3] 3L_24328189_SNP [dm6]	T	C	4.198e^-24	8.559e^-21	INTRON nvd
3R	8894495	3R_8894495_SNP [dm3] 3R_13068773_SNP [dm6]	G	C	5.062e^-24	1.031e^-20	INTRON sim	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sbb
2L	5710977	2L_5710977_SNP [dm3] 2L_5710977_SNP [dm6]	A	G	5.887e^-24	1.196e^-20	UPSTREAM CG7236 INTRON CG7236
X	19231751	X_19231751_DEL [dm3] X_19337718_DEL [dm6]	ACTGAACATATCATAAACAC...	A	5.887e^-24	1.196e^-20	INTRON nAChRalpha7	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_zfh1
2L	7223475	2L_7223475_SNP [dm3] 2L_7223475_SNP [dm6]	A	C	7.025e^-24	1.425e^-20	UTR_3_PRIME Ndae1 UPSTREAM ico DOWNSTREAM Ndae1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA
X	11845092	X_11845092_SNP [dm3] X_11951059_SNP [dm6]	A	T	7.242e^-24	1.467e^-20	INTRON cac
2L	8002707	2L_8002707_SNP [dm3] 2L_8002707_SNP [dm6]	T	G	7.601e^-24	1.538e^-20	INTRON Wwox
3L	10693313	3L_10693313_DEL [dm3] 3L_10700213_DEL [dm6]	AATAT	A	7.638e^-24	1.542e^-20	INTERGENIC
X	13088651	X_13088651_SNP [dm3] X_13194618_SNP [dm6]	C	T	7.638e^-24	1.542e^-20	UPSTREAM CG2453 DOWNSTREAM sno INTERGENIC
2R	10248265	2R_10248265_DEL [dm3] 2R_14360760_DEL [dm6]	AA	A	9.064e^-24	1.820e^-20	UPSTREAM Arc1 EXON CR10102	TF binding site mE1_TFBS_chinmo
X	14058378	X_14058378_SNP [dm3] X_14164345_SNP [dm6]	T	C	9.064e^-24	1.820e^-20	INTERGENIC
X	16599737	X_16599737_SNP [dm3] X_16705704_SNP [dm6]	G	T	9.064e^-24	1.820e^-20	DOWNSTREAM CG9672 & 1 other INTRON CG4678
X	7485931	X_7485931_SNP [dm3] X_7591898_SNP [dm6]	G	T	9.064e^-24	1.820e^-20	INTERGENIC	regulatory region REDfly_CRMs
X	10087926	X_10087926_SNP [dm3] X_10193893_SNP [dm6]	C	A	1.114e^-23	2.234e^-20	UTR_3_PRIME CG43902 INTRON CR44894
3R	16725601	3R_16725601_SNP [dm3] 3R_20899879_SNP [dm6]	T	C	1.115e^-23	2.234e^-20	INTERGENIC
3L	8662412	3L_8662412_SNP [dm3] 3L_8669312_SNP [dm6]	C	A	1.665e^-23	3.332e^-20	INTERGENIC	regulatory region FlyBase TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad
2L	17045479	2L_17045479_INS [dm3] 2L_17045479_INS [dm6]	T	TGTATAAGTAT...	2.327e^-23	4.651e^-20	INTERGENIC
2R	16957622	2R_16957622_SNP [dm3] 2R_21070117_SNP [dm6]	C	G	3.059e^-23	6.106e^-20	UPSTREAM Cht9 & 1 other DOWNSTREAM CG10527 & 1 other INTERGENIC
2L	4086196	2L_4086196_DEL [dm3] 2L_4086196_DEL [dm6]	CCCC	C	3.855e^-23	7.685e^-20	DOWNSTREAM snoRNA:Me28S-C437 INTRON ed	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2R	16989498	2R_16989498_INS [dm3] 2R_21101993_INS [dm6]	A	ACCAAA	3.273e^-21	6.516e^-18	UTR_5_PRIME ktub DOWNSTREAM CG34396	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10910254	3L_10910254_SNP [dm3] 3L_10917154_SNP [dm6]	T	G	2.220e^-16	4.415e^-13	INTERGENIC
X	20129123	X_20129123_INS [dm3] X_20258097_INS [dm6]	T	TT	3.331e^-16	6.615e^-13	UPSTREAM CG17065 INTERGENIC
X	13007117	X_13007117_SNP [dm3] X_13113084_SNP [dm6]	T	A	4.441e^-16	8.809e^-13	UPSTREAM CG43313 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Ubx
2L	10197218	2L_10197218_SNP [dm3] 2L_10197218_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING Sur
2L	12446867	2L_12446867_SNP [dm3] 2L_12446867_SNP [dm6]	T	A	2.641e^-7	4.817e^-4	NON_SYNONYMOUS_CODING CG5421 UPSTREAM Oatp33Ea
2L	12506916	2L_12506916_SNP [dm3] 2L_12506916_SNP [dm6]	G	C	2.641e^-7	4.817e^-4	INTRON bun	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
2L	13448593	2L_13448593_SNP [dm3] 2L_13448593_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING Hsp60D INTRON CG42784	TF binding site BDTNP1_TFBS_sna
2L	20553613	2L_20553613_SNP [dm3] 2L_20553613_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTERGENIC
2L	3384085	2L_3384085_SNP [dm3] 2L_3384085_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	INTERGENIC
2L	3384092	2L_3384092_SNP [dm3] 2L_3384092_SNP [dm6]	T	G	2.641e^-7	4.817e^-4	INTERGENIC
2L	3384108	2L_3384108_SNP [dm3] 2L_3384108_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	INTERGENIC
2L	6694947	2L_6694947_SNP [dm3] 2L_6694947_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTRON Tsp
2L	6694950	2L_6694950_SNP [dm3] 2L_6694950_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	INTRON Tsp
2L	728952	2L_728952_SNP [dm3] 2L_728952_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING Hsp60B	TF binding site mE1_TFBS_HSA
2L	934389	2L_934389_SNP [dm3] 2L_934389_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTRON CG4341
2R	15439787	2R_15439787_SNP [dm3] 2R_19552282_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG43111 INTRON sm
2R	2676905	2R_2676905_SNP [dm3] 2R_6789400_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	UPSTREAM Epac INTRON Epac	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	10835522	3L_10835522_SNP [dm3] 3L_10842422_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10835525	3L_10835525_SNP [dm3] 3L_10842425_SNP [dm6]	C	A	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3L	10840780	3L_10840780_SNP [dm3] 3L_10847680_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl
3L	10869949	3L_10869949_SNP [dm3] 3L_10876849_SNP [dm6]	A	T	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 DOWNSTREAM tna	TF binding site mE1_TFBS_sens
3L	10869958	3L_10869958_SNP [dm3] 3L_10876858_SNP [dm6]	C	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 DOWNSTREAM tna	TF binding site mE1_TFBS_sens
3L	10871038	3L_10871038_SNP [dm3] 3L_10877938_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418	TF binding site mE1_TFBS_sens
3L	10871068	3L_10871068_SNP [dm3] 3L_10877968_SNP [dm6]	C	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418	TF binding site mE1_TFBS_sens
3L	10871209	3L_10871209_SNP [dm3] 3L_10878109_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
3L	10871218	3L_10871218_SNP [dm3] 3L_10878118_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
3L	10871257	3L_10871257_SNP [dm3] 3L_10878157_SNP [dm6]	T	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
3L	10871260	3L_10871260_SNP [dm3] 3L_10878160_SNP [dm6]	T	A	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
3L	10871347	3L_10871347_SNP [dm3] 3L_10878247_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_sens
3L	10871533	3L_10871533_SNP [dm3] 3L_10878433_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10871858	3L_10871858_SNP [dm3] 3L_10878758_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	NON_SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872229	3L_10872229_SNP [dm3] 3L_10879129_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	UTR_5_PRIME Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872437	3L_10872437_SNP [dm3] 3L_10879337_SNP [dm6]	G	T	2.641e^-7	4.817e^-4	UPSTREAM CG6418 INTRON Blos4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872444	3L_10872444_SNP [dm3] 3L_10879344_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	UPSTREAM CG6418 INTRON Blos4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10873692	3L_10873692_SNP [dm3] 3L_10880592_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	DOWNSTREAM CG6409 & 1 other INTERGENIC
3L	10873711	3L_10873711_SNP [dm3] 3L_10880611_SNP [dm6]	C	G	2.641e^-7	4.817e^-4	DOWNSTREAM CG6409 & 1 other INTERGENIC
3L	10873714	3L_10873714_SNP [dm3] 3L_10880614_SNP [dm6]	T	A	2.641e^-7	4.817e^-4	DOWNSTREAM CG6409 & 1 other INTERGENIC
3L	15637218	3L_15637218_DEL [dm3] 3L_15644118_DEL [dm6]	TC	T	2.641e^-7	4.817e^-4	INTRON comm3
3L	16808367	3L_16808367_SNP [dm3] 3L_16815267_SNP [dm6]	T	G	2.641e^-7	4.817e^-4	INTRON nudC & 1 other
3L	18134536	3L_18134536_SNP [dm3] 3L_18141436_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTRON gk
3L	1975433	3L_1975433_SNP [dm3] 3L_1975433_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTERGENIC
3L	3697842	3L_3697842_SNP [dm3] 3L_3697842_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	INTERGENIC
3L	4687925	3L_4687925_SNP [dm3] 3L_4687925_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG7514 UPSTREAM axo	TF binding site mE1_TFBS_cad
3L	8073697	3L_8073697_SNP [dm3] 3L_8080597_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	INTRON Ect4	TF binding site BDTNP1_TFBS_dl
3L	8655377	3L_8655377_SNP [dm3] 3L_8662277_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
3L	8967748	3L_8967748_SNP [dm3] 3L_8974648_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	UPSTREAM Srp68 & 1 other INTRON pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	8967790	3L_8967790_SNP [dm3] 3L_8974690_SNP [dm6]	C	A	2.641e^-7	4.817e^-4	UTR_5_PRIME pix UPSTREAM Srp68 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	8968285	3L_8968285_SNP [dm3] 3L_8975185_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	NON_SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8971403	3L_8971403_SNP [dm3] 3L_8978303_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	DOWNSTREAM Srp68 INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10070291	3R_10070291_SNP [dm3] 3R_14244569_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	NON_SYNONYMOUS_CODING CG43291 DOWNSTREAM CG9616
3R	10070519	3R_10070519_SNP [dm3] 3R_14244797_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	UPSTREAM CG43291 DOWNSTREAM CG9616 INTERGENIC
3R	10071042	3R_10071042_SNP [dm3] 3R_14245320_SNP [dm6]	C	G	2.641e^-7	4.817e^-4	SYNONYMOUS_CODING CG9616 UPSTREAM CG43291
3R	10732808	3R_10732808_INS [dm3] 3R_14907086_INS [dm6]	CT	GGATATGTGGGTATATTC...	2.641e^-7	4.817e^-4	INTERGENIC
3R	13819584	3R_13819584_DEL [dm3] 3R_17993862_DEL [dm6]	TT	T	2.641e^-7	4.817e^-4	INTRON cpo	TF binding site mE1_TFBS_inv
3R	20819083	3R_20819083_SNP [dm3] 3R_24993361_SNP [dm6]	T	A	2.641e^-7	4.817e^-4	INTRON tnc
3R	21650398	3R_21650398_SNP [dm3] 3R_25824676_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	EXON CR44949
3R	21650591	3R_21650591_SNP [dm3] 3R_25824869_SNP [dm6]	G	T	2.641e^-7	4.817e^-4	EXON CR44949
3R	21650613	3R_21650613_SNP [dm3] 3R_25824891_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	EXON CR44949
3R	25420466	3R_25420466_SNP [dm3] 3R_29594744_SNP [dm6]	A	T	2.641e^-7	4.817e^-4	INTRON alph
3R	25420470	3R_25420470_SNP [dm3] 3R_29594748_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	INTRON alph
3R	27281690	3R_27281690_SNP [dm3] 3R_31455968_SNP [dm6]	C	A	2.641e^-7	4.817e^-4	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	27281756	3R_27281756_SNP [dm3] 3R_31456034_SNP [dm6]	G	T	2.641e^-7	4.817e^-4	INTRON Gprk2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6271565	3R_6271565_SNP [dm3] 3R_10445843_SNP [dm6]	A	T	2.641e^-7	4.817e^-4	INTERGENIC
3R	8066983	3R_8066983_SNP [dm3] 3R_12241261_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	DOWNSTREAM CR44036 INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	8068091	3R_8068091_SNP [dm3] 3R_12242369_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8068106	3R_8068106_SNP [dm3] 3R_12242384_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	8069117	3R_8069117_SNP [dm3] 3R_12243395_SNP [dm6]	G	A	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	8069171	3R_8069171_SNP [dm3] 3R_12243449_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi BDTNP1_TFBS_z
3R	8620903	3R_8620903_SNP [dm3] 3R_12795181_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTERGENIC
X	13300450	X_13300450_SNP [dm3] X_13406417_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTRON GstT4
X	16897029	X_16897029_SNP [dm3] X_17002996_SNP [dm6]	T	C	2.641e^-7	4.817e^-4	INTRON CG45002
X	18826382	X_18826382_SNP [dm3] X_18932349_SNP [dm6]	A	G	2.641e^-7	4.817e^-4	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	21063355	X_21063355_SNP [dm3] X_21192328_SNP [dm6]	C	T	2.641e^-7	4.817e^-4	UPSTREAM CG14579 INTERGENIC
X	4613929	X_4613929_SNP [dm3] X_4719896_SNP [dm6]	A	C	2.641e^-7	4.817e^-4	INTRON Proc-R
2L	12300553	2L_12300553_SNP [dm3] 2L_12300553_SNP [dm6]	T	C	6.983e^-7	0.001	INTRON aret	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	1719239	2L_1719239_SNP [dm3] 2L_1719239_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON Rim2
2L	18653837	2L_18653837_SNP [dm3] 2L_18653837_SNP [dm6]	A	G	6.983e^-7	0.001	UPSTREAM Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	18653841	2L_18653841_SNP [dm3] 2L_18653841_SNP [dm6]	G	A	6.983e^-7	0.001	UPSTREAM Cyp310a1 INTRON MESR3	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	18654039	2L_18654039_INS [dm3] 2L_18654039_INS [dm6]	T	TT	6.983e^-7	0.001	INTRON MESR3	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA
2L	3384095	2L_3384095_SNP [dm3] 2L_3384095_SNP [dm6]	A	T	6.983e^-7	0.001	INTERGENIC
2L	6809524	2L_6809524_SNP [dm3] 2L_6809524_SNP [dm6]	T	C	6.983e^-7	0.001	INTERGENIC
2R	6451248	2R_6451248_SNP [dm3] 2R_10563743_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
2R	6451251	2R_6451251_SNP [dm3] 2R_10563746_SNP [dm6]	C	T	6.983e^-7	0.001	INTRON psq	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA
3L	10640315	3L_10640315_SNP [dm3] 3L_10647215_SNP [dm6]	C	T	6.983e^-7	0.001	INTRON CG32066
3L	10640320	3L_10640320_SNP [dm3] 3L_10647220_SNP [dm6]	G	C	6.983e^-7	0.001	INTRON CG32066
3L	10872166	3L_10872166_SNP [dm3] 3L_10879066_SNP [dm6]	G	A	6.983e^-7	0.001	UPSTREAM Blos4 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872308	3L_10872308_SNP [dm3] 3L_10879208_SNP [dm6]	A	C	6.983e^-7	0.001	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872315	3L_10872315_SNP [dm3] 3L_10879215_SNP [dm6]	C	T	6.983e^-7	0.001	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10872329	3L_10872329_SNP [dm3] 3L_10879229_SNP [dm6]	C	T	6.983e^-7	0.001	SYNONYMOUS_CODING Blos4 UPSTREAM CG6418	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	1095050	3L_1095050_SNP [dm3] 3L_1095050_SNP [dm6]	A	G	6.983e^-7	0.001	INTRON bab1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi
3L	12407157	3L_12407157_SNP [dm3] 3L_12414057_SNP [dm6]	A	C	6.983e^-7	0.001	UTR_5_PRIME CG32103 DOWNSTREAM ArfGAP1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	16808550	3L_16808550_SNP [dm3] 3L_16815450_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON nudC & 1 other
3L	1694200	3L_1694200_DEL [dm3] 3L_1694200_DEL [dm6]	TT	T	6.983e^-7	0.001	UPSTREAM CG12011 INTRON CG7991
3L	18134575	3L_18134575_SNP [dm3] 3L_18141475_SNP [dm6]	A	G	6.983e^-7	0.001	INTRON gk
3L	18134601	3L_18134601_SNP [dm3] 3L_18141501_SNP [dm6]	A	C	6.983e^-7	0.001	INTRON gk
3L	18134654	3L_18134654_SNP [dm3] 3L_18141554_SNP [dm6]	C	T	6.983e^-7	0.001	INTRON gk
3L	18134655	3L_18134655_SNP [dm3] 3L_18141555_SNP [dm6]	C	T	6.983e^-7	0.001	INTRON gk
3L	18134656	3L_18134656_DEL [dm3] 3L_18141556_DEL [dm6]	AAATTTGTATAT...	A	6.983e^-7	0.001	INTRON gk
3L	19666923	3L_19666923_SNP [dm3] 3L_19673823_SNP [dm6]	C	A	6.983e^-7	0.001	INTERGENIC
3L	1975413	3L_1975413_SNP [dm3] 3L_1975413_SNP [dm6]	T	G	6.983e^-7	0.001	INTERGENIC
3L	3284904	3L_3284904_SNP [dm3] 3L_3284904_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON CG12017
3L	3284910	3L_3284910_SNP [dm3] 3L_3284910_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON CG12017
3L	3284911	3L_3284911_SNP [dm3] 3L_3284911_SNP [dm6]	A	G	6.983e^-7	0.001	INTRON CG12017
3L	5802261	3L_5802261_SNP [dm3] 3L_5809161_SNP [dm6]	A	G	6.983e^-7	0.001	INTRON S6k	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_inv
3L	8967935	3L_8967935_SNP [dm3] 3L_8974835_SNP [dm6]	A	G	6.983e^-7	0.001	UPSTREAM Srp68 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	8967944	3L_8967944_SNP [dm3] 3L_8974844_SNP [dm6]	T	G	6.983e^-7	0.001	UPSTREAM Srp68 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
3L	8970967	3L_8970967_SNP [dm3] 3L_8977867_SNP [dm6]	G	T	6.983e^-7	0.001	SYNONYMOUS_CODING CG5644 DOWNSTREAM Srp68	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8970976	3L_8970976_SNP [dm3] 3L_8977876_SNP [dm6]	G	A	6.983e^-7	0.001	SYNONYMOUS_CODING CG5644 DOWNSTREAM Srp68	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	8971230	3L_8971230_SNP [dm3] 3L_8978130_SNP [dm6]	G	A	6.983e^-7	0.001	SYNONYMOUS_CODING CG5644 DOWNSTREAM Srp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8971324	3L_8971324_SNP [dm3] 3L_8978224_SNP [dm6]	G	A	6.983e^-7	0.001	SYNONYMOUS_CODING CG5644 DOWNSTREAM Srp68	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	8971872	3L_8971872_SNP [dm3] 3L_8978772_SNP [dm6]	G	T	6.983e^-7	0.001	INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	11764453	3R_11764453_SNP [dm3] 3R_15938731_SNP [dm6]	T	C	6.983e^-7	0.001	INTRON Sap47
3R	16998278	3R_16998278_SNP [dm3] 3R_21172556_SNP [dm6]	A	G	6.983e^-7	0.001	INTRON SNF4Agamma	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25420476	3R_25420476_SNP [dm3] 3R_29594754_SNP [dm6]	T	G	6.983e^-7	0.001	INTRON alph
3R	25671505	3R_25671505_SNP [dm3] 3R_29845783_SNP [dm6]	T	A	6.983e^-7	0.001	INTRON Cad99C
3R	8620265	3R_8620265_SNP [dm3] 3R_12794543_SNP [dm6]	G	T	6.983e^-7	0.001	INTERGENIC
3R	8620329	3R_8620329_INS [dm3] 3R_12794607_INS [dm6]	C	TT	6.983e^-7	0.001	INTERGENIC
X	18826180	X_18826180_SNP [dm3] X_18932147_SNP [dm6]	C	G	6.983e^-7	0.001	INTRON CG43759	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sbb
X	20690395	X_20690395_SNP [dm3] X_20819368_SNP [dm6]	G	C	6.983e^-7	0.001	INTRON shakB
X	3530846	X_3530846_SNP [dm3] X_3636813_SNP [dm6]	T	A	6.983e^-7	0.001	INTRON AstA-R1
X	3531245	X_3531245_SNP [dm3] X_3637212_SNP [dm6]	G	T	6.983e^-7	0.001	INTRON AstA-R1
X	3531255	X_3531255_SNP [dm3] X_3637222_SNP [dm6]	T	C	6.983e^-7	0.001	INTRON AstA-R1
X	7728277	X_7728277_SNP [dm3] X_7834244_SNP [dm6]	G	A	6.983e^-7	0.001	INTRON CG1402
X	9264238	X_9264238_SNP [dm3] X_9370205_SNP [dm6]	T	G	6.983e^-7	0.001	SYNONYMOUS_CODING mgl	TF binding site mE1_TFBS_sens
2L	1611501	2L_1611501_SNP [dm3] 2L_1611501_SNP [dm6]	A	T	1.222e^-6	0.002	UTR_5_PRIME CG14352 UPSTREAM CG31935 DOWNSTREAM RFeSP	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Ubx
2L	3099824	2L_3099824_SNP [dm3] 2L_3099824_SNP [dm6]	C	A	1.222e^-6	0.002	START_GAINED toc UTR_5_PRIME toc INTRON toc
2R	7039506	2R_7039506_SNP [dm3] 2R_11152001_SNP [dm6]	T	C	1.222e^-6	0.002	INTRON CG13229
3L	15471185	3L_15471185_SNP [dm3] 3L_15478085_SNP [dm6]	C	T	1.222e^-6	0.002	INTERGENIC
3L	15471264	3L_15471264_SNP [dm3] 3L_15478164_SNP [dm6]	T	A	1.222e^-6	0.002	INTERGENIC
3L	3779561	3L_3779561_SNP [dm3] 3L_3779561_SNP [dm6]	G	T	1.222e^-6	0.002	INTRON CG32264
3L	7741976	3L_7741976_SNP [dm3] 3L_7748876_SNP [dm6]	C	G	1.222e^-6	0.002	UTR_3_PRIME CG13685 INTRON CG32373
3L	8967664	3L_8967664_SNP [dm3] 3L_8974564_SNP [dm6]	T	G	1.222e^-6	0.002	UPSTREAM Srp68 & 1 other INTRON pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	9327281	X_9327281_SNP [dm3] X_9433248_SNP [dm6]	G	C	1.222e^-6	0.002	INTRON mgl
X	9327335	X_9327335_SNP [dm3] X_9433302_SNP [dm6]	T	A	1.222e^-6	0.002	INTRON mgl
2L	15363121	2L_15363121_SNP [dm3] 2L_15363121_SNP [dm6]	A	G	1.796e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	15363129	2L_15363129_SNP [dm3] 2L_15363129_SNP [dm6]	A	T	1.796e^-6	0.003	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	1762149	2L_1762149_SNP [dm3] 2L_1762149_SNP [dm6]	C	T	1.796e^-6	0.003	INTERGENIC
2L	20595155	2L_20595155_DEL [dm3] 2L_20595155_DEL [dm6]	GG	G	1.796e^-6	0.003	INTRON CR44909
2L	3384151	2L_3384151_SNP [dm3] 2L_3384151_SNP [dm6]	C	A	1.796e^-6	0.003	INTERGENIC
2R	19135216	2R_19135216_SNP [dm3] 2R_23247693_SNP [dm6]	A	G	1.796e^-6	0.003	NON_SYNONYMOUS_CODING RpL22-like	TF binding site mE1_TFBS_chinmo
3R	27208761	3R_27208761_SNP [dm3] 3R_31383039_SNP [dm6]	T	C	1.796e^-6	0.003	INTRON CG1607
X	17680884	X_17680884_SNP [dm3] X_17786851_SNP [dm6]	G	C	1.796e^-6	0.003	INTERGENIC
3L	10881976	3L_10881976_SNP [dm3] 3L_10888876_SNP [dm6]	C	T	3.565e^-6	0.006	INTERGENIC
3L	10881978	3L_10881978_SNP [dm3] 3L_10888878_SNP [dm6]	G	A	3.565e^-6	0.006	INTERGENIC
3L	12442037	3L_12442037_SNP [dm3] 3L_12448937_SNP [dm6]	C	A	3.565e^-6	0.006	INTERGENIC
3L	12442044	3L_12442044_SNP [dm3] 3L_12448944_SNP [dm6]	A	G	3.565e^-6	0.006	INTERGENIC
3L	5393487	3L_5393487_SNP [dm3] 3L_5400387_SNP [dm6]	A	C	3.565e^-6	0.006	INTERGENIC
3L	5393503	3L_5393503_SNP [dm3] 3L_5400403_SNP [dm6]	T	C	3.565e^-6	0.006	INTERGENIC
3L	8967991	3L_8967991_SNP [dm3] 3L_8974891_SNP [dm6]	G	A	3.565e^-6	0.006	UPSTREAM Srp68 & 1 other INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl
X	17389448	X_17389448_SNP [dm3] X_17495415_SNP [dm6]	T	A	3.565e^-6	0.006	INTRON CG43658
2L	3100240	2L_3100240_SNP [dm3] 2L_3100240_SNP [dm6]	A	G	4.180e^-6	0.007	INTRON toc
2L	3427184	2L_3427184_SNP [dm3] 2L_3427184_SNP [dm6]	T	C	4.180e^-6	0.007	UPSTREAM pgant2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	10871548	3L_10871548_SNP [dm3] 3L_10878448_SNP [dm6]	G	A	4.180e^-6	0.007	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	10871869	3L_10871869_SNP [dm3] 3L_10878769_SNP [dm6]	T	C	4.180e^-6	0.007	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	6837611	3L_6837611_SNP [dm3] 3L_6844511_SNP [dm6]	C	T	4.180e^-6	0.007	INTERGENIC
3L	8968298	3L_8968298_SNP [dm3] 3L_8975198_SNP [dm6]	C	G	4.180e^-6	0.007	SYNONYMOUS_CODING Srp68 UPSTREAM pix	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	8971412	3L_8971412_DEL [dm3] 3L_8978312_DEL [dm6]	GG	G	4.180e^-6	0.007	DOWNSTREAM Srp68 INTRON CG5644	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	8624938	3R_8624938_SNP [dm3] 3R_12799216_SNP [dm6]	A	T	4.180e^-6	0.007	INTERGENIC
X	16037960	X_16037960_SNP [dm3] X_16143927_SNP [dm6]	G	A	4.180e^-6	0.007	INTRON disco-r	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	7165330	2L_7165330_INS [dm3] 2L_7165330_INS [dm6]	A	AATAAGAA	4.662e^-6	0.008	INTERGENIC
2R	12123087	2R_12123087_SNP [dm3] 2R_16235582_SNP [dm6]	A	C	4.662e^-6	0.008	UPSTREAM CG7786 INTERGENIC
2R	12123314	2R_12123314_SNP [dm3] 2R_16235809_SNP [dm6]	A	G	4.662e^-6	0.008	UPSTREAM CG7786 & 1 other INTERGENIC
2R	14450570	2R_14450570_SNP [dm3] 2R_18563065_SNP [dm6]	G	A	4.662e^-6	0.008	INTRON GEFmeso	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	15054339	2R_15054339_SNP [dm3] 2R_19166834_SNP [dm6]	A	T	4.662e^-6	0.008	INTRON CG10737	TF binding site mE1_TFBS_Trl
2R	15054439	2R_15054439_SNP [dm3] 2R_19166934_SNP [dm6]	C	A	4.662e^-6	0.008	INTRON CG10737	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	1579107	2R_1579107_SNP [dm3] 2R_5691602_SNP [dm6]	G	C	4.662e^-6	0.008	UPSTREAM scaf INTRON scaf	TF binding site mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA
2R	18531873	2R_18531873_SNP [dm3] 2R_22644368_SNP [dm6]	T	G	4.662e^-6	0.008	UPSTREAM Ugt58Fa DOWNSTREAM CG2852 INTERGENIC
2R	20612683	2R_20612683_SNP [dm3] 2R_24725160_SNP [dm6]	T	C	4.662e^-6	0.008	INTRON Mid1	TF binding site BDTNP1_TFBS_twi
2R	20612691	2R_20612691_SNP [dm3] 2R_24725168_SNP [dm6]	T	C	4.662e^-6	0.008	INTRON Mid1	TF binding site BDTNP1_TFBS_twi
2R	6015381	2R_6015381_INS [dm3] 2R_10127876_INS [dm6]	C	TT	4.662e^-6	0.008	INTRON gem	TF binding site BDTNP1_TFBS_dl
2R	6248653	2R_6248653_SNP [dm3] 2R_10361148_SNP [dm6]	C	T	4.662e^-6	0.008	DOWNSTREAM CG43396 INTRON CG42732
2R	6248660	2R_6248660_SNP [dm3] 2R_10361155_SNP [dm6]	G	A	4.662e^-6	0.008	DOWNSTREAM CG43396 INTRON CG42732
2R	6887908	2R_6887908_SNP [dm3] 2R_11000403_SNP [dm6]	C	A	4.662e^-6	0.008	INTRON luna
2R	7037876	2R_7037876_SNP [dm3] 2R_11150371_SNP [dm6]	T	C	4.662e^-6	0.008	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	7038339	2R_7038339_SNP [dm3] 2R_11150834_SNP [dm6]	T	A	4.662e^-6	0.008	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7038413	2R_7038413_SNP [dm3] 2R_11150908_SNP [dm6]	T	A	4.662e^-6	0.008	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
2R	7038511	2R_7038511_SNP [dm3] 2R_11151006_SNP [dm6]	T	A	4.662e^-6	0.008	UPSTREAM CG12391 INTRON CG13229	TF binding site BDTNP1_TFBS_hb
2R	7039474	2R_7039474_SNP [dm3] 2R_11151969_SNP [dm6]	G	A	4.662e^-6	0.008	INTRON CG13229
2R	7039749	2R_7039749_SNP [dm3] 2R_11152244_SNP [dm6]	T	C	4.662e^-6	0.008	INTRON CG13229
2R	7039981	2R_7039981_INS [dm3] 2R_11152476_INS [dm6]	T	TTAT	4.662e^-6	0.008	INTRON CG13229
2R	7040003	2R_7040003_SNP [dm3] 2R_11152498_SNP [dm6]	A	T	4.662e^-6	0.008	INTRON CG13229
2R	7392517	2R_7392517_SNP [dm3] 2R_11505012_SNP [dm6]	T	G	4.662e^-6	0.008	INTRON inv
2R	9512756	2R_9512756_SNP [dm3] 2R_13625251_SNP [dm6]	A	G	4.662e^-6	0.008	INTRON fas
2R	9772912	2R_9772912_SNP [dm3] 2R_13885407_SNP [dm6]	C	T	4.662e^-6	0.008	NON_SYNONYMOUS_CODING shot INTRON shot	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3L	3698241	3L_3698241_SNP [dm3] 3L_3698241_SNP [dm6]	G	C	4.662e^-6	0.008	INTERGENIC
3R	22367181	3R_22367181_SNP [dm3] 3R_26541459_SNP [dm6]	C	G	4.662e^-6	0.008	INTRON scrib
3R	7712672	3R_7712672_SNP [dm3] 3R_11886950_SNP [dm6]	C	T	4.662e^-6	0.008	UTR_5_PRIME mthl5 INTRON CG31368	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	6608733	X_6608733_SNP [dm3] X_6714700_SNP [dm6]	T	A	4.662e^-6	0.008	INTRON CG14441	TF binding site BDTNP1_TFBS_dl
2L	20223387	2L_20223387_INS [dm3] 2L_20223387_INS [dm6]	C	CCTTCTCAAAATTGTAATAC...	4.967e^-6	0.008	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10871748	3L_10871748_SNP [dm3] 3L_10878648_SNP [dm6]	G	T	4.967e^-6	0.008	SYNONYMOUS_CODING CG6418 UPSTREAM Blos4	TF binding site BDTNP1_TFBS_Med mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	10874063	3L_10874063_SNP [dm3] 3L_10880963_SNP [dm6]	G	T	4.967e^-6	0.008	SYNONYMOUS_CODING CG6409 DOWNSTREAM Blos4	TF binding site mE1_TFBS_chinmo
3L	13183188	3L_13183188_SNP [dm3] 3L_13190088_SNP [dm6]	T	C	4.967e^-6	0.008	INTERGENIC

By genomic position
Variant impact
Gene name

NWMRC_Block phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results