DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=4.093e^-27)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.1463	0.0761
In_3R_P	5.8823	0.0528

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

12545 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
X	8837232	X_8837232_SNP [dm3] X_8943199_SNP [dm6]	T	C	1.734e^-18	3.252e^-12	INTRON rdgA
2R	8193131	2R_8193131_SNP [dm3] 2R_12305626_SNP [dm6]	C	A	2.913e^-17	2.732e^-11	SYNONYMOUS_CODING SIP2 UPSTREAM CG17739	TF binding site mE1_TFBS_inv
3R	3820087	3R_3820087_SNP [dm3] 3R_7994365_SNP [dm6]	G	T	5.014e^-17	3.135e^-11	INTRON CG2781
2R	8242479	2R_8242479_SNP [dm3] 2R_12354974_SNP [dm6]	C	T	7.290e^-17	3.419e^-11	SYNONYMOUS_CODING CG30047 UPSTREAM CG30049	TF binding site mE1_TFBS_sens
X	9283746	X_9283746_SNP [dm3] X_9389713_SNP [dm6]	G	A	9.997e^-17	3.750e^-11	INTRON mgl
3L	4092421	3L_4092421_SNP [dm3] 3L_4092421_SNP [dm6]	T	C	1.464e^-16	4.577e^-11	UTR_3_PRIME CG14989 UPSTREAM CG14990	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8242496	2R_8242496_SNP [dm3] 2R_12354991_SNP [dm6]	C	T	1.745e^-16	4.675e^-11	SYNONYMOUS_CODING CG30047 UPSTREAM CG30049	TF binding site mE1_TFBS_sens
3L	13072190	3L_13072190_SNP [dm3] 3L_13079090_SNP [dm6]	A	T	3.209e^-16	7.525e^-11	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA
3L	15633584	3L_15633584_SNP [dm3] 3L_15640484_SNP [dm6]	A	G	1.462e^-15	3.046e^-10	INTRON comm3	TF binding site mE1_TFBS_hkb
3L	13254694	3L_13254694_SNP [dm3] 3L_13261594_SNP [dm6]	G	T	1.915e^-15	3.592e^-10	INTRON caps
3L	12401626	3L_12401626_SNP [dm3] 3L_12408526_SNP [dm6]	T	G	3.106e^-15	5.297e^-10	UTR_5_PRIME CG32103 INTRON CG32103	TF binding site mE1_TFBS_cad
X	8837229	X_8837229_DEL [dm3] X_8943196_DEL [dm6]	CC	A	3.580e^-15	5.596e^-10	INTRON rdgA
3R	11839112	3R_11839112_SNP [dm3] 3R_16013390_SNP [dm6]	G	A	1.112e^-14	1.533e^-9	INTRON GATAe	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	8512828	X_8512828_SNP [dm3] X_8618795_SNP [dm6]	A	G	1.144e^-14	1.533e^-9	INTERGENIC	regulatory region REDfly_CRMs
2R	10700517	2R_10700517_SNP [dm3] 2R_14813012_SNP [dm6]	T	A	1.238e^-14	1.548e^-9	INTERGENIC	regulatory region REDfly_CRMs
3R	23545248	3R_23545248_SNP [dm3] 3R_27719526_SNP [dm6]	C	A	9.728e^-14	1.140e^-8	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13238037	3L_13238037_SNP [dm3] 3L_13244937_SNP [dm6]	A	T	1.252e^-13	1.381e^-8	INTRON caps	TF binding site BDTNP1_TFBS_dl
X	10200344	X_10200344_SNP [dm3] X_10306311_SNP [dm6]	C	T	1.890e^-13	1.969e^-8	INTRON alpha-Man-I
3L	13254540	3L_13254540_SNP [dm3] 3L_13261440_SNP [dm6]	A	T	2.836e^-13	2.723e^-8	INTRON caps
3R	13298125	3R_13298125_SNP [dm3] 3R_17472403_SNP [dm6]	A	T	2.904e^-13	2.723e^-8	INTERGENIC
3R	7194630	3R_7194630_INS [dm3] 3R_11368908_INS [dm6]	A	AAAGTACAA	5.307e^-13	4.740e^-8	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3L	7720298	3L_7720298_DEL [dm3] 3L_7727198_DEL [dm6]	CGCTGAAAAAGT...	C	8.292e^-13	7.069e^-8	UPSTREAM CG7457 DOWNSTREAM CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA
3R	23509215	3R_23509215_SNP [dm3] 3R_27683493_SNP [dm6]	A	T	1.695e^-12	1.382e^-7	INTERGENIC	TF binding site mE1_TFBS_chinmo
3R	10343265	3R_10343265_SNP [dm3] 3R_14517543_SNP [dm6]	C	G	2.319e^-12	1.812e^-7	DOWNSTREAM CG34273 INTRON Pde6
3R	7194296	3R_7194296_SNP [dm3] 3R_11368574_SNP [dm6]	T	A	2.927e^-12	2.196e^-7	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15198172	X_15198172_SNP [dm3] X_15304139_SNP [dm6]	G	A	6.048e^-12	4.363e^-7	INTRON gce
3R	10442861	3R_10442861_SNP [dm3] 3R_14617139_SNP [dm6]	A	G	8.887e^-12	6.174e^-7	INTRON CG14853	TF binding site mE1_TFBS_cad
3L	3923160	3L_3923160_SNP [dm3] 3L_3923160_SNP [dm6]	C	G	9.336e^-12	6.254e^-7	INTRON Eip63F-1
3R	3827036	3R_3827036_SNP [dm3] 3R_8001314_SNP [dm6]	G	T	1.266e^-11	8.190e^-7	UPSTREAM CG2698 & 1 other DOWNSTREAM CG14463 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_jumu
3R	7527076	3R_7527076_SNP [dm3] 3R_11701354_SNP [dm6]	G	A	1.322e^-11	8.264e^-7	SYNONYMOUS_CODING CG14718	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	5151733	3R_5151733_SNP [dm3] 3R_9326011_SNP [dm6]	T	A	1.380e^-11	8.352e^-7	INTRON CG8861
3L	13254716	3L_13254716_DEL [dm3] 3L_13261616_DEL [dm6]	CAT	C	1.839e^-11	1.071e^-6	INTRON caps
2R	8244303	2R_8244303_SNP [dm3] 2R_12356798_SNP [dm6]	G	A	1.884e^-11	1.071e^-6	SYNONYMOUS_CODING CG30049	TF binding site mE1_TFBS_HSA
3L	16131567	3L_16131567_SNP [dm3] 3L_16138467_SNP [dm6]	C	A	2.417e^-11	1.333e^-6	UTR_3_PRIME CG5151 UPSTREAM CG5157
2R	9581722	2R_9581722_SNP [dm3] 2R_13694217_SNP [dm6]	G	C	2.576e^-11	1.380e^-6	UPSTREAM CG6220 INTRON fas	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	14270282	3L_14270282_SNP [dm3] 3L_14277182_SNP [dm6]	T	C	3.103e^-11	1.603e^-6	INTRON fz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14219529	2R_14219529_SNP [dm3] 2R_18332024_SNP [dm6]	G	C	3.162e^-11	1.603e^-6	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_inv
X	13140884	X_13140884_DEL [dm3] X_13246851_DEL [dm6]	AA	A	3.631e^-11	1.771e^-6	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
3R	25466016	3R_25466016_SNP [dm3] 3R_29640294_SNP [dm6]	G	A	3.682e^-11	1.771e^-6	SYNONYMOUS_CODING Dop1R2
3L	16561580	3L_16561580_SNP [dm3] 3L_16568480_SNP [dm6]	A	T	3.879e^-11	1.819e^-6	INTRON Mipp1
3R	26043835	3R_26043835_SNP [dm3] 3R_30218113_SNP [dm6]	C	T	4.152e^-11	1.900e^-6	INTERGENIC
X	8837224	X_8837224_SNP [dm3] X_8943191_SNP [dm6]	G	A	4.501e^-11	1.963e^-6	INTRON rdgA
X	8837225	X_8837225_SNP [dm3] X_8943192_SNP [dm6]	T	A	4.501e^-11	1.963e^-6	INTRON rdgA
X	8837218	X_8837218_DEL [dm3] X_8943185_DEL [dm6]	AAACA	A	5.174e^-11	2.206e^-6	INTRON rdgA
2L	19985708	2L_19985708_SNP [dm3] 2L_19985708_SNP [dm6]	A	T	5.481e^-11	2.285e^-6	INTRON CG43861	TF binding site mE1_TFBS_inv
X	14601920	X_14601920_SNP [dm3] X_14707887_SNP [dm6]	A	G	8.325e^-11	3.395e^-6	INTRON NetB
2R	11544440	2R_11544440_SNP [dm3] 2R_15656935_SNP [dm6]	G	A	1.057e^-10	4.217e^-6	UTR_3_PRIME CG42524 UPSTREAM mir-278 DOWNSTREAM fus	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14667099	2R_14667099_SNP [dm3] 2R_18779594_SNP [dm6]	A	G	1.142e^-10	4.464e^-6	INTERGENIC
3L	20508654	3L_20508654_SNP [dm3] 3L_20515554_SNP [dm6]	G	T	1.183e^-10	4.530e^-6	SYNONYMOUS_CODING CG5059	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
3L	2835206	3L_2835206_SNP [dm3] 3L_2835206_SNP [dm6]	T	A	1.342e^-10	5.036e^-6	INTRON CG43444
3L	22708230	3L_22708230_SNP [dm3] 3L_22715130_SNP [dm6]	G	A	1.390e^-10	5.063e^-6	INTRON ArfGAP3
3L	16618907	3L_16618907_SNP [dm3] 3L_16625807_SNP [dm6]	C	T	1.404e^-10	5.063e^-6	INTRON Abl	TF binding site BDTNP1_TFBS_dl
3L	16135763	3L_16135763_SNP [dm3] 3L_16142663_SNP [dm6]	C	T	1.532e^-10	5.420e^-6	NON_SYNONYMOUS_CODING CG32152 UTR_5_PRIME CG5151 INTRON CG5151
X	15198500	X_15198500_SNP [dm3] X_15304467_SNP [dm6]	A	T	1.579e^-10	5.484e^-6	INTRON gce
3R	6137862	3R_6137862_SNP [dm3] 3R_10312140_SNP [dm6]	T	C	1.622e^-10	5.489e^-6	UTR_3_PRIME Bruce UPSTREAM CG6293	TF binding site mE1_TFBS_cad
3R	26828557	3R_26828557_SNP [dm3] 3R_31002835_SNP [dm6]	T	G	1.639e^-10	5.489e^-6	INTRON 5-HT7
3R	26002844	3R_26002844_SNP [dm3] 3R_30177122_SNP [dm6]	G	A	1.707e^-10	5.617e^-6	UPSTREAM CG15530 INTRON CG1983
3L	14115499	3L_14115499_SNP [dm3] 3L_14122399_SNP [dm6]	T	G	1.780e^-10	5.731e^-6	INTRON Sox21b	TF binding site BDTNP1_TFBS_dl
3R	25466632	3R_25466632_SNP [dm3] 3R_29640910_SNP [dm6]	A	G	1.803e^-10	5.731e^-6	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14667105	2R_14667105_SNP [dm3] 2R_18779600_SNP [dm6]	A	T	1.922e^-10	6.007e^-6	INTERGENIC
3R	10440157	3R_10440157_SNP [dm3] 3R_14614435_SNP [dm6]	C	T	2.003e^-10	6.158e^-6	INTRON CG14853
3L	4184517	3L_4184517_SNP [dm3] 3L_4184517_SNP [dm6]	T	G	2.088e^-10	6.247e^-6	SYNONYMOUS_CODING Teh3 INTRON CG18675 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25988915	3R_25988915_SNP [dm3] 3R_30163193_SNP [dm6]	C	T	2.098e^-10	6.247e^-6	INTERGENIC
3R	25563014	3R_25563014_SNP [dm3] 3R_29737292_SNP [dm6]	C	T	2.382e^-10	6.981e^-6	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site mE1_TFBS_sens mE1_TFBS_Ubx
3L	20494860	3L_20494860_SNP [dm3] 3L_20501760_SNP [dm6]	G	A	2.448e^-10	7.004e^-6	DOWNSTREAM CG18281 INTRON CG32425	transposable element FlyBase
3L	2590625	3L_2590625_SNP [dm3] 3L_2590625_SNP [dm6]	A	C	2.533e^-10	7.004e^-6	UTR_5_PRIME dos INTRON dos	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Stat92E
2R	8222446	2R_8222446_DEL [dm3] 2R_12334941_DEL [dm6]	CTTTTAAAAAATTAAAAAGA...	C	2.538e^-10	7.004e^-6	UPSTREAM tRNA:CR30249 & 2 others DOWNSTREAM tRNA:CR30251 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14993373	2R_14993373_SNP [dm3] 2R_19105868_SNP [dm6]	A	T	2.557e^-10	7.004e^-6	INTRON 5-HT1A
3L	16138978	3L_16138978_SNP [dm3] 3L_16145878_SNP [dm6]	T	G	2.586e^-10	7.004e^-6	INTRON CG5151	TF binding site mE1_TFBS_Trl
3R	25467034	3R_25467034_SNP [dm3] 3R_29641312_SNP [dm6]	G	A	2.633e^-10	7.004e^-6	SYNONYMOUS_CODING Dop1R2	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8183687	2R_8183687_SNP [dm3] 2R_12296182_SNP [dm6]	G	C	2.651e^-10	7.004e^-6	DOWNSTREAM CR45271 INTRON CG42700
3R	7163818	3R_7163818_SNP [dm3] 3R_11338096_SNP [dm6]	T	A	2.751e^-10	7.114e^-6	INTRON pros
3R	6842426	3R_6842426_SNP [dm3] 3R_11016704_SNP [dm6]	T	C	2.769e^-10	7.114e^-6	INTRON CG34114
3L	7716497	3L_7716497_SNP [dm3] 3L_7723397_SNP [dm6]	C	T	2.870e^-10	7.196e^-6	SYNONYMOUS_CODING CG7457 INTRON CG32373
2L	16485055	2L_16485055_SNP [dm3] 2L_16485055_SNP [dm6]	G	A	2.877e^-10	7.196e^-6	INTRON dac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3R	25465938	3R_25465938_SNP [dm3] 3R_29640216_SNP [dm6]	G	A	2.969e^-10	7.327e^-6	INTRON Dop1R2
3L	17360676	3L_17360676_SNP [dm3] 3L_17367576_SNP [dm6]	T	G	3.359e^-10	8.183e^-6	DOWNSTREAM Cad74A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10978581	3R_10978581_SNP [dm3] 3R_15152859_SNP [dm6]	C	A	3.432e^-10	8.228e^-6	INTRON Gyc88E
3L	16131973	3L_16131973_SNP [dm3] 3L_16138873_SNP [dm6]	C	T	3.465e^-10	8.228e^-6	UTR_3_PRIME CG5151 UPSTREAM CG5157 DOWNSTREAM CG5151 & 1 other
X	7863423	X_7863423_SNP [dm3] X_7969390_SNP [dm6]	T	G	3.565e^-10	8.359e^-6	UPSTREAM sn INTRON sn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Trl
3R	26116556	3R_26116556_SNP [dm3] 3R_30290834_SNP [dm6]	C	T	3.927e^-10	9.093e^-6	INTRON hdc
3L	10445864	3L_10445864_SNP [dm3] 3L_10452764_SNP [dm6]	A	C	4.043e^-10	9.248e^-6	INTERGENIC
X	10045050	X_10045050_SNP [dm3] X_10151017_SNP [dm6]	G	A	4.212e^-10	9.518e^-6	INTRON CR44894
3R	25563247	3R_25563247_SNP [dm3] 3R_29737525_SNP [dm6]	T	C	4.369e^-10	9.642e^-6	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	25563253	3R_25563253_SNP [dm3] 3R_29737531_SNP [dm6]	T	G	4.369e^-10	9.642e^-6	UPSTREAM CG7601 & 1 other INTRON CG7598	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3R	6842621	3R_6842621_SNP [dm3] 3R_11016899_SNP [dm6]	A	T	4.745e^-10	1.035e^-5	INTRON CG34114
3L	12723974	3L_12723974_SNP [dm3] 3L_12730874_SNP [dm6]	G	A	4.915e^-10	1.060e^-5	INTERGENIC
3L	12985319	3L_12985319_SNP [dm3] 3L_12992219_SNP [dm6]	A	T	5.238e^-10	1.113e^-5	INTERGENIC
3R	10461907	3R_10461907_SNP [dm3] 3R_14636185_SNP [dm6]	C	T	5.280e^-10	1.113e^-5	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10251690	3R_10251690_SNP [dm3] 3R_14425968_SNP [dm6]	G	A	5.708e^-10	1.190e^-5	INTRON cv-c
3R	10251743	3R_10251743_SNP [dm3] 3R_14426021_SNP [dm6]	C	A	5.890e^-10	1.214e^-5	INTRON cv-c
2L	3679010	2L_3679010_SNP [dm3] 2L_3679010_SNP [dm6]	T	C	5.969e^-10	1.217e^-5	INTRON CG34340
3R	25602927	3R_25602927_SNP [dm3] 3R_29777205_SNP [dm6]	C	T	6.127e^-10	1.236e^-5	INTRON kay
3L	7728151	3L_7728151_SNP [dm3] 3L_7735051_SNP [dm6]	G	T	6.246e^-10	1.245e^-5	INTRON CG32373 & 1 other
3L	17808834	3L_17808834_SNP [dm3] 3L_17815734_SNP [dm6]	C	T	6.310e^-10	1.245e^-5	SYNONYMOUS_CODING Ir75a
X	5586604	X_5586604_SNP [dm3] X_5692571_SNP [dm6]	G	A	6.370e^-10	1.245e^-5	SYNONYMOUS_STOP cv DOWNSTREAM CG3149
3L	9412857	3L_9412857_DEL [dm3] 3L_9419757_DEL [dm6]	GATATGG	G	6.526e^-10	1.262e^-5	UPSTREAM CG3967 INTRON CG3967	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	15261513	3R_15261513_SNP [dm3] 3R_19435791_SNP [dm6]	A	G	6.762e^-10	1.271e^-5	INTRON CG31221
3R	5704329	3R_5704329_SNP [dm3] 3R_9878607_SNP [dm6]	T	C	6.843e^-10	1.271e^-5	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	25602933	3R_25602933_INS [dm3] 3R_29777211_INS [dm6]	A	AATGGCTAT	6.891e^-10	1.271e^-5	INTRON kay
3R	25602936	3R_25602936_INS [dm3] 3R_29777214_INS [dm6]	A	ACCCACG	6.891e^-10	1.271e^-5	INTRON kay
2R	14667096	2R_14667096_INS [dm3] 2R_18779591_INS [dm6]	C	CTTT	6.971e^-10	1.271e^-5	INTERGENIC
3L	10126364	3L_10126364_SNP [dm3] 3L_10133264_SNP [dm6]	G	C	6.982e^-10	1.271e^-5	INTRON dpr6
2R	14667759	2R_14667759_SNP [dm3] 2R_18780254_SNP [dm6]	A	G	7.100e^-10	1.281e^-5	INTERGENIC
3R	25689511	3R_25689511_SNP [dm3] 3R_29863789_SNP [dm6]	T	A	7.218e^-10	1.289e^-5	UTR_3_PRIME RpS8 & 1 other DOWNSTREAM snoRNA:Me28S-A2564 & 1 other
2L	6737085	2L_6737085_SNP [dm3] 2L_6737085_SNP [dm6]	G	T	7.499e^-10	1.327e^-5	SYNONYMOUS_CODING TTLL3A DOWNSTREAM TTLL3B	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo
3L	14293527	3L_14293527_SNP [dm3] 3L_14300427_SNP [dm6]	G	A	7.610e^-10	1.334e^-5	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14666776	2R_14666776_SNP [dm3] 2R_18779271_SNP [dm6]	T	C	7.763e^-10	1.339e^-5	INTERGENIC
3L	12976159	3L_12976159_SNP [dm3] 3L_12983059_SNP [dm6]	G	A	7.779e^-10	1.339e^-5	INTERGENIC
2R	19537676	2R_19537676_SNP [dm3] 2R_23650153_SNP [dm6]	A	T	8.135e^-10	1.387e^-5	INTRON retn	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	15185800	2R_15185800_SNP [dm3] 2R_19298295_SNP [dm6]	T	C	8.407e^-10	1.416e^-5	UTR_5_PRIME Tab2 INTRON Tab2	TF binding site mE1_TFBS_Trl
2R	14668641	2R_14668641_SNP [dm3] 2R_18781136_SNP [dm6]	G	T	8.455e^-10	1.416e^-5	INTERGENIC
2R	14667102	2R_14667102_SNP [dm3] 2R_18779597_SNP [dm6]	T	C	8.738e^-10	1.450e^-5	INTERGENIC
3R	11006245	3R_11006245_SNP [dm3] 3R_15180523_SNP [dm6]	T	C	8.915e^-10	1.467e^-5	UPSTREAM Mf INTRON Gyc88E & 1 other
X	8055971	X_8055971_SNP [dm3] X_8161938_SNP [dm6]	G	T	9.833e^-10	1.604e^-5	NON_SYNONYMOUS_CODING CG10761 DOWNSTREAM CG15337	TF binding site mE1_TFBS_chinmo
3L	7722757	3L_7722757_SNP [dm3] 3L_7729657_SNP [dm6]	C	T	9.930e^-10	1.606e^-5	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_sens
3L	16132752	3L_16132752_SNP [dm3] 3L_16139652_SNP [dm6]	G	T	1.102e^-9	1.767e^-5	UTR_3_PRIME CG5151 & 1 other
3R	4632555	3R_4632555_SNP [dm3] 3R_8806833_SNP [dm6]	C	A	1.123e^-9	1.775e^-5	SYNONYMOUS_CODING hng2 DOWNSTREAM Tcp-1eta & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_ttk
X	8746680	X_8746680_SNP [dm3] X_8852647_SNP [dm6]	C	T	1.130e^-9	1.775e^-5	UPSTREAM CG12075 INTRON CG12075
3L	16565938	3L_16565938_SNP [dm3] 3L_16572838_SNP [dm6]	T	A	1.135e^-9	1.775e^-5	UPSTREAM Mipp1 INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	12722075	3L_12722075_SNP [dm3] 3L_12728975_SNP [dm6]	C	T	1.211e^-9	1.877e^-5	INTERGENIC
3L	16137352	3L_16137352_SNP [dm3] 3L_16144252_SNP [dm6]	G	A	1.284e^-9	1.974e^-5	UPSTREAM CG5151 & 1 other INTRON CG5151	insulator Insulator_Class_I.mE01
3R	7184560	3R_7184560_SNP [dm3] 3R_11358838_SNP [dm6]	G	A	1.307e^-9	1.978e^-5	INTRON pros
2R	12094991	2R_12094991_SNP [dm3] 2R_16207486_SNP [dm6]	G	C	1.308e^-9	1.978e^-5	DOWNSTREAM tRNA:CR30237 INTRON mrj	TF binding site BDTNP1_TFBS_dl
2L	19987061	2L_19987061_SNP [dm3] 2L_19987061_SNP [dm6]	C	T	1.318e^-9	1.978e^-5	INTRON CG43861
3R	26096845	3R_26096845_SNP [dm3] 3R_30271123_SNP [dm6]	C	A	1.345e^-9	2.002e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8243910	2R_8243910_SNP [dm3] 2R_12356405_SNP [dm6]	C	T	1.384e^-9	2.044e^-5	SYNONYMOUS_CODING CG30049 DOWNSTREAM CG30047	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11327678	3R_11327678_SNP [dm3] 3R_15501956_SNP [dm6]	C	T	1.403e^-9	2.055e^-5	INTERGENIC
3R	7194730	3R_7194730_SNP [dm3] 3R_11369008_SNP [dm6]	G	T	1.471e^-9	2.123e^-5	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
X	8512731	X_8512731_SNP [dm3] X_8618698_SNP [dm6]	C	T	1.496e^-9	2.123e^-5	INTERGENIC	regulatory region REDfly_CRMs
3R	25356858	3R_25356858_SNP [dm3] 3R_29531136_SNP [dm6]	C	G	1.505e^-9	2.123e^-5	INTERGENIC
2R	8221372	2R_8221372_SNP [dm3] 2R_12333867_SNP [dm6]	G	A	1.512e^-9	2.123e^-5	DOWNSTREAM tRNA:CR30249 & 2 others INTERGENIC
2R	17593910	2R_17593910_SNP [dm3] 2R_21706405_SNP [dm6]	G	A	1.524e^-9	2.123e^-5	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
2R	17593921	2R_17593921_SNP [dm3] 2R_21706416_SNP [dm6]	G	C	1.524e^-9	2.123e^-5	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3L	16132463	3L_16132463_SNP [dm3] 3L_16139363_SNP [dm6]	C	G	1.528e^-9	2.123e^-5	UTR_3_PRIME CG5151 DOWNSTREAM CG5151 & 1 other	TF binding site mE1_TFBS_h mE1_TFBS_HSA
3L	16076018	3L_16076018_SNP [dm3] 3L_16082918_SNP [dm6]	A	G	1.618e^-9	2.231e^-5	SYNONYMOUS_CODING CG33258 DOWNSTREAM Mbs	TF binding site mE1_TFBS_hkb mE1_TFBS_HSA
X	13140874	X_13140874_SNP [dm3] X_13246841_SNP [dm6]	A	G	1.651e^-9	2.247e^-5	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
2R	2868879	2R_2868879_SNP [dm3] 2R_6981374_SNP [dm6]	C	A	1.654e^-9	2.247e^-5	UPSTREAM CR44171 DOWNSTREAM CG30156 INTRON vimar	TF binding site BDTNP1_TFBS_da
3L	8323484	3L_8323484_SNP [dm3] 3L_8330384_SNP [dm6]	G	A	1.684e^-9	2.273e^-5	DOWNSTREAM CG34462 INTERGENIC
3L	16551225	3L_16551225_SNP [dm3] 3L_16558125_SNP [dm6]	A	T	1.837e^-9	2.461e^-5	DOWNSTREAM CG4229 INTERGENIC
2R	18544469	2R_18544469_SNP [dm3] 2R_22656964_SNP [dm6]	T	A	1.909e^-9	2.539e^-5	SYNONYMOUS_CODING CG43325 UTR_5_PRIME CG43326 UPSTREAM CG43326 & 3 others DOWNSTREAM CR45268	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	14218476	2R_14218476_SNP [dm3] 2R_18330971_SNP [dm6]	T	G	1.987e^-9	2.624e^-5	INTRON sbb
3R	26035126	3R_26035126_SNP [dm3] 3R_30209404_SNP [dm6]	G	A	2.051e^-9	2.684e^-5	UPSTREAM RpS7 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Ubx
X	8614602	X_8614602_INS [dm3] X_8720569_INS [dm6]	A	ACA	2.061e^-9	2.684e^-5	UTR_5_PRIME CG1789 UPSTREAM l_1_G0020	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
3R	7184438	3R_7184438_SNP [dm3] 3R_11358716_SNP [dm6]	G	A	2.128e^-9	2.735e^-5	INTRON pros
3R	7184548	3R_7184548_DEL [dm3] 3R_11358826_DEL [dm6]	GT	G	2.128e^-9	2.735e^-5	INTRON pros
2L	7016367	2L_7016367_SNP [dm3] 2L_7016367_SNP [dm6]	A	G	2.177e^-9	2.777e^-5	SYNONYMOUS_CODING ade3	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	4924233	X_4924233_SNP [dm3] X_5030200_SNP [dm6]	C	T	2.196e^-9	2.783e^-5	INTRON CR44833
2R	14667107	2R_14667107_SNP [dm3] 2R_18779602_SNP [dm6]	A	T	2.221e^-9	2.796e^-5	INTERGENIC
3L	14053318	3L_14053318_SNP [dm3] 3L_14060218_SNP [dm6]	A	T	2.492e^-9	3.117e^-5	INTRON CG32138
X	3021686	X_3021686_SNP [dm3] X_3127653_SNP [dm6]	T	G	2.575e^-9	3.194e^-5	UPSTREAM kirre INTRON kirre
3L	7718300	3L_7718300_SNP [dm3] 3L_7725200_SNP [dm6]	A	G	2.588e^-9	3.194e^-5	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2R	8005644	2R_8005644_DEL [dm3] 2R_12118139_DEL [dm6]	AA	A	2.624e^-9	3.217e^-5	UTR_5_PRIME jeb	TF binding site BDTNP1_TFBS_sna
2R	11347657	2R_11347657_SNP [dm3] 2R_15460152_SNP [dm6]	G	A	2.648e^-9	3.225e^-5	INTRON CG43729
3R	23514002	3R_23514002_SNP [dm3] 3R_27688280_SNP [dm6]	C	T	2.722e^-9	3.294e^-5	UPSTREAM CG31055 INTRON CG12880	TF binding site mE1_TFBS_chinmo
3R	6840791	3R_6840791_SNP [dm3] 3R_11015069_SNP [dm6]	G	A	2.750e^-9	3.306e^-5	INTRON CG34114
2R	10549229	2R_10549229_SNP [dm3] 2R_14661724_SNP [dm6]	T	C	2.831e^-9	3.382e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	4888829	3R_4888829_SNP [dm3] 3R_9063107_SNP [dm6]	T	A	2.888e^-9	3.429e^-5	UTR_3_PRIME Kdm2 DOWNSTREAM beag
3R	5783629	3R_5783629_SNP [dm3] 3R_9957907_SNP [dm6]	A	G	2.932e^-9	3.450e^-5	INTRON Glut4EF
3L	14353172	3L_14353172_SNP [dm3] 3L_14360072_SNP [dm6]	T	G	2.945e^-9	3.450e^-5	INTRON fz
3R	12812132	3R_12812132_SNP [dm3] 3R_16986410_SNP [dm6]	C	G	2.962e^-9	3.450e^-5	UPSTREAM CG18622 INTRON CG18622
3L	5594534	3L_5594534_SNP [dm3] 3L_5601434_SNP [dm6]	C	G	2.987e^-9	3.455e^-5	UTR_3_PRIME CG10590
3L	15624190	3L_15624190_SNP [dm3] 3L_15631090_SNP [dm6]	A	T	3.009e^-9	3.455e^-5	INTRON comm3
2R	17167185	2R_17167185_SNP [dm3] 2R_21279680_SNP [dm6]	A	G	3.020e^-9	3.455e^-5	INTRON Rgk3
X	18246119	X_18246119_SNP [dm3] X_18352086_SNP [dm6]	T	G	3.078e^-9	3.499e^-5	INTRON CG6123
3L	14053314	3L_14053314_SNP [dm3] 3L_14060214_SNP [dm6]	G	C	3.127e^-9	3.527e^-5	INTRON CG32138
3L	7728150	3L_7728150_SNP [dm3] 3L_7735050_SNP [dm6]	G	C	3.140e^-9	3.527e^-5	INTRON CG32373 & 1 other
3R	12373401	3R_12373401_SNP [dm3] 3R_16547679_SNP [dm6]	A	T	3.198e^-9	3.571e^-5	INTRON CG42342
3R	10462811	3R_10462811_SNP [dm3] 3R_14637089_SNP [dm6]	T	C	3.314e^-9	3.678e^-5	SYNONYMOUS_CODING Cad88C INTRON CG7886	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	9820312	3R_9820312_SNP [dm3] 3R_13994590_SNP [dm6]	A	T	3.592e^-9	3.951e^-5	INTRON rdx
3L	16551179	3L_16551179_SNP [dm3] 3L_16558079_SNP [dm6]	G	T	3.609e^-9	3.951e^-5	DOWNSTREAM CG4229 INTERGENIC
2R	14667104	2R_14667104_SNP [dm3] 2R_18779599_SNP [dm6]	T	A	3.623e^-9	3.951e^-5	INTERGENIC
X	18176130	X_18176130_SNP [dm3] X_18282097_SNP [dm6]	G	A	3.700e^-9	4.012e^-5	INTRON upd3	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	15616739	3L_15616739_SNP [dm3] 3L_15623639_SNP [dm6]	G	T	3.833e^-9	4.132e^-5	UTR_3_PRIME CG7372 INTRON comm3
2R	11284081	2R_11284081_DEL [dm3] 2R_15396576_DEL [dm6]	CC	C	3.895e^-9	4.151e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	11284095	2R_11284095_SNP [dm3] 2R_15396590_SNP [dm6]	T	C	3.895e^-9	4.151e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	24722183	3R_24722183_DEL [dm3] 3R_28896461_DEL [dm6]	AA	A	3.956e^-9	4.192e^-5	INTRON Doa
3R	23798956	3R_23798956_SNP [dm3] 3R_27973234_SNP [dm6]	T	A	4.093e^-9	4.313e^-5	INTRON betaTub97EF
2R	11284070	2R_11284070_SNP [dm3] 2R_15396565_SNP [dm6]	C	T	4.337e^-9	4.545e^-5	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	6265512	3R_6265512_SNP [dm3] 3R_10439790_SNP [dm6]	G	A	4.642e^-9	4.837e^-5	INTERGENIC
3L	1409093	3L_1409093_SNP [dm3] 3L_1409093_SNP [dm6]	G	A	4.746e^-9	4.919e^-5	INTRON Ptp61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4040640	3R_4040640_SNP [dm3] 3R_8214918_SNP [dm6]	C	A	4.922e^-9	5.072e^-5	INTERGENIC
2L	5079419	2L_5079419_SNP [dm3] 2L_5079419_SNP [dm6]	C	T	5.011e^-9	5.137e^-5	UTR_5_PRIME pgant5	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	6837091	3R_6837091_SNP [dm3] 3R_11011369_SNP [dm6]	T	C	5.091e^-9	5.190e^-5	INTRON CG34114
3R	10341249	3R_10341249_SNP [dm3] 3R_14515527_SNP [dm6]	C	G	5.361e^-9	5.435e^-5	UTR_3_PRIME Pde6
2R	19540074	2R_19540074_SNP [dm3] 2R_23652551_SNP [dm6]	A	G	5.766e^-9	5.815e^-5	SYNONYMOUS_CODING retn	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
2L	19985702	2L_19985702_SNP [dm3] 2L_19985702_SNP [dm6]	G	A	5.939e^-9	5.957e^-5	INTRON CG43861	TF binding site mE1_TFBS_inv
3R	7193040	3R_7193040_SNP [dm3] 3R_11367318_SNP [dm6]	T	G	6.125e^-9	6.111e^-5	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25563221	3R_25563221_SNP [dm3] 3R_29737499_SNP [dm6]	T	A	6.183e^-9	6.136e^-5	SYNONYMOUS_CODING CG7598 UPSTREAM CG7601 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
3L	2606343	3L_2606343_SNP [dm3] 3L_2606343_SNP [dm6]	T	G	6.503e^-9	6.420e^-5	INTRON Pxn
3L	12975995	3L_12975995_SNP [dm3] 3L_12982895_SNP [dm6]	T	G	6.575e^-9	6.423e^-5	INTERGENIC
3L	12976003	3L_12976003_DEL [dm3] 3L_12982903_DEL [dm6]	CC	C	6.575e^-9	6.423e^-5	INTERGENIC
3R	5211809	3R_5211809_SNP [dm3] 3R_9386087_SNP [dm6]	T	C	6.623e^-9	6.437e^-5	INTRON FER	TF binding site mE1_TFBS_HSA
X	11040888	X_11040888_INS [dm3] X_11146855_INS [dm6]	A	AAATGTCA	6.770e^-9	6.546e^-5	UPSTREAM Ran INTRON Ran	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
3R	12091863	3R_12091863_SNP [dm3] 3R_16266141_SNP [dm6]	G	A	6.938e^-9	6.674e^-5	SYNONYMOUS_CODING asun UPSTREAM Mst89B	TF binding site mE1_TFBS_cad
2R	11342649	2R_11342649_SNP [dm3] 2R_15455144_SNP [dm6]	A	T	7.109e^-9	6.803e^-5	INTRON CG43729
2R	14659445	2R_14659445_SNP [dm3] 2R_18771940_SNP [dm6]	T	G	7.399e^-9	7.045e^-5	INTRON Mctp
3L	2437719	3L_2437719_INS [dm3] 3L_2437719_INS [dm6]	G	GG	7.483e^-9	7.088e^-5	INTRON CG45186	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	10433448	3R_10433448_SNP [dm3] 3R_14607726_SNP [dm6]	C	A	7.653e^-9	7.213e^-5	UTR_3_PRIME stumps
3L	1296031	3L_1296031_SNP [dm3] 3L_1296031_SNP [dm6]	A	C	7.705e^-9	7.215e^-5	SYNONYMOUS_CODING Rabex-5 DOWNSTREAM CG32333	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	9415210	X_9415210_SNP [dm3] X_9521177_SNP [dm6]	G	A	7.783e^-9	7.215e^-5	INTRON CG32700
3L	18218299	3L_18218299_SNP [dm3] 3L_18225199_SNP [dm6]	C	A	7.787e^-9	7.215e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	18646825	3L_18646825_SNP [dm3] 3L_18653725_SNP [dm6]	T	C	7.809e^-9	7.215e^-5	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl
3R	14883368	3R_14883368_SNP [dm3] 3R_19057646_SNP [dm6]	G	C	7.852e^-9	7.219e^-5	INTRON cdi	TF binding site mE1_TFBS_chinmo
3L	12737856	3L_12737856_SNP [dm3] 3L_12744756_SNP [dm6]	A	C	8.020e^-9	7.338e^-5	UPSTREAM CG32109 INTRON CG32112
3R	10364218	3R_10364218_INS [dm3] 3R_14538496_INS [dm6]	G	ATGA	8.190e^-9	7.457e^-5	INTRON Pde6
X	8837349	X_8837349_SNP [dm3] X_8943316_SNP [dm6]	G	T	8.387e^-9	7.600e^-5	INTRON rdgA
3L	10445858	3L_10445858_SNP [dm3] 3L_10452758_SNP [dm6]	G	A	8.468e^-9	7.636e^-5	INTERGENIC
2R	14668175	2R_14668175_SNP [dm3] 2R_18780670_SNP [dm6]	G	C	8.708e^-9	7.797e^-5	INTERGENIC
3L	19179652	3L_19179652_SNP [dm3] 3L_19186552_SNP [dm6]	A	T	8.806e^-9	7.797e^-5	INTRON fz2
3L	19179672	3L_19179672_SNP [dm3] 3L_19186572_SNP [dm6]	G	C	8.806e^-9	7.797e^-5	INTRON fz2
3R	10993398	3R_10993398_SNP [dm3] 3R_15167676_SNP [dm6]	G	C	8.856e^-9	7.797e^-5	INTRON Gyc88E
2L	10013910	2L_10013910_SNP [dm3] 2L_10013910_SNP [dm6]	T	C	8.877e^-9	7.797e^-5	NON_SYNONYMOUS_CODING CG13131 DOWNSTREAM Trp1
3L	14105304	3L_14105304_SNP [dm3] 3L_14112204_SNP [dm6]	C	T	8.900e^-9	7.797e^-5	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	7195802	3R_7195802_SNP [dm3] 3R_11370080_SNP [dm6]	G	C	8.938e^-9	7.797e^-5	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10364153	3R_10364153_SNP [dm3] 3R_14538431_SNP [dm6]	G	A	9.041e^-9	7.851e^-5	INTRON Pde6
X	11420063	X_11420063_SNP [dm3] X_11526030_SNP [dm6]	A	G	9.159e^-9	7.917e^-5	INTRON Drak
3R	10161763	3R_10161763_SNP [dm3] 3R_14336041_SNP [dm6]	C	T	9.249e^-9	7.944e^-5	INTRON NK7.1
3L	14255280	3L_14255280_SNP [dm3] 3L_14262180_SNP [dm6]	C	T	9.299e^-9	7.944e^-5	INTERGENIC
3L	13402789	3L_13402789_DEL [dm3] 3L_13409689_DEL [dm6]	TTT	T	9.317e^-9	7.944e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11823737	X_11823737_SNP [dm3] X_11929704_SNP [dm6]	T	A	9.549e^-9	8.105e^-5	SPLICE_SITE_REGION CG10362 INTRON CG10362
X	13142501	X_13142501_SNP [dm3] X_13248468_SNP [dm6]	C	T	9.873e^-9	8.338e^-5	INTRON mew
2R	18641139	2R_18641139_SNP [dm3] 2R_22753634_SNP [dm6]	C	T	9.935e^-9	8.338e^-5	INTRON CG42260
3R	25265373	3R_25265373_SNP [dm3] 3R_29439651_SNP [dm6]	C	T	9.958e^-9	8.338e^-5	INTRON Ptp99A
2L	20029500	2L_20029500_SNP [dm3] 2L_20029500_SNP [dm6]	A	T	1.008e^-8	8.407e^-5	INTRON sNPF
3R	6390924	3R_6390924_SNP [dm3] 3R_10565202_SNP [dm6]	A	G	1.025e^-8	8.477e^-5	INTRON hth
3R	14626457	3R_14626457_SNP [dm3] 3R_18800735_SNP [dm6]	T	G	1.026e^-8	8.477e^-5	UTR_3_PRIME CG18208
3L	10445914	3L_10445914_SNP [dm3] 3L_10452814_SNP [dm6]	C	A	1.038e^-8	8.535e^-5	INTERGENIC
3L	7708788	3L_7708788_SNP [dm3] 3L_7715688_SNP [dm6]	C	G	1.044e^-8	8.550e^-5	INTRON CG32373 & 1 other
3L	10446892	3L_10446892_SNP [dm3] 3L_10453792_SNP [dm6]	A	T	1.053e^-8	8.584e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	10770742	3L_10770742_SNP [dm3] 3L_10777642_SNP [dm6]	T	C	1.065e^-8	8.651e^-5	INTERGENIC	TF binding site mE1_TFBS_cnc mE1_TFBS_HSA
2L	8369567	2L_8369567_INS [dm3] 2L_8369567_INS [dm6]	G	TCAAA	1.096e^-8	8.859e^-5	SPLICE_SITE_REGION Pp2A-29B UPSTREAM CG17292 DOWNSTREAM CR45341 INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
3R	26096524	3R_26096524_SNP [dm3] 3R_30270802_SNP [dm6]	A	G	1.142e^-8	9.189e^-5	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	7184109	3R_7184109_DEL [dm3] 3R_11358387_DEL [dm6]	ATCCACCCATCCGCCCTTAG...	A	1.164e^-8	9.330e^-5	INTRON pros
3R	26127304	3R_26127304_SNP [dm3] 3R_30301582_SNP [dm6]	G	A	1.182e^-8	9.437e^-5	INTRON hdc
3R	25466309	3R_25466309_SNP [dm3] 3R_29640587_SNP [dm6]	G	T	1.197e^-8	9.471e^-5	INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	25466342	3R_25466342_SNP [dm3] 3R_29640620_SNP [dm6]	C	T	1.197e^-8	9.471e^-5	SPLICE_SITE_REGION Dop1R2 INTRON Dop1R2	TF binding site mE1_TFBS_chinmo
3R	25909492	3R_25909492_SNP [dm3] 3R_30083770_SNP [dm6]	G	A	1.226e^-8	9.666e^-5	INTRON sima
2R	12707123	2R_12707123_SNP [dm3] 2R_16819618_SNP [dm6]	G	A	1.245e^-8	9.753e^-5	UPSTREAM CR43417 INTERGENIC
3R	26127527	3R_26127527_SNP [dm3] 3R_30301805_SNP [dm6]	G	C	1.253e^-8	9.753e^-5	INTRON hdc
X	15855238	X_15855238_SNP [dm3] X_15961205_SNP [dm6]	A	T	1.253e^-8	9.753e^-5	INTRON mmd
3R	7184695	3R_7184695_SNP [dm3] 3R_11358973_SNP [dm6]	G	T	1.274e^-8	9.875e^-5	INTRON pros
X	13327470	X_13327470_SNP [dm3] X_13433437_SNP [dm6]	G	A	1.341e^-8	1.035e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11090174	2R_11090174_SNP [dm3] 2R_15202669_SNP [dm6]	G	C	1.392e^-8	1.070e^-4	SYNONYMOUS_CODING CG42391 INTRON CG11807
2R	8185745	2R_8185745_SNP [dm3] 2R_12298240_SNP [dm6]	T	A	1.443e^-8	1.100e^-4	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
3R	10263683	3R_10263683_SNP [dm3] 3R_14437961_SNP [dm6]	A	C	1.448e^-8	1.100e^-4	INTRON cv-c
3R	10263719	3R_10263719_SNP [dm3] 3R_14437997_SNP [dm6]	G	A	1.448e^-8	1.100e^-4	INTRON cv-c
3L	16135077	3L_16135077_SNP [dm3] 3L_16141977_SNP [dm6]	T	G	1.471e^-8	1.112e^-4	INTRON CG5151 & 1 other	TF binding site mE1_TFBS_cad
2R	18533914	2R_18533914_DEL [dm3] 2R_22646409_DEL [dm6]	TT	T	1.550e^-8	1.156e^-4	UPSTREAM CG2852 DOWNSTREAM CG30195 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	9987149	2L_9987149_SNP [dm3] 2L_9987149_SNP [dm6]	T	C	1.552e^-8	1.156e^-4	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
X	11995431	X_11995431_SNP [dm3] X_12101398_SNP [dm6]	T	C	1.553e^-8	1.156e^-4	INTRON CR43960 & 1 other
3R	23509238	3R_23509238_SNP [dm3] 3R_27683516_SNP [dm6]	A	C	1.561e^-8	1.156e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	2841415	3L_2841415_SNP [dm3] 3L_2841415_SNP [dm6]	A	C	1.561e^-8	1.156e^-4	INTRON CG43444
2R	14664989	2R_14664989_SNP [dm3] 2R_18777484_SNP [dm6]	A	G	1.568e^-8	1.156e^-4	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
2L	2080916	2L_2080916_SNP [dm3] 2L_2080916_SNP [dm6]	A	G	1.572e^-8	1.156e^-4	SYNONYMOUS_CODING CG12674 INTRON dpr3
2L	2208975	2L_2208975_SNP [dm3] 2L_2208975_SNP [dm6]	G	A	1.598e^-8	1.171e^-4	START_GAINED CG33124 UTR_5_PRIME CG33124 DOWNSTREAM CG15385
X	15696459	X_15696459_SNP [dm3] X_15802426_SNP [dm6]	A	G	1.610e^-8	1.171e^-4	SYNONYMOUS_CODING PGRP-LE	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	15696529	X_15696529_SNP [dm3] X_15802496_SNP [dm6]	G	A	1.610e^-8	1.171e^-4	INTRON PGRP-LE	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
X	4925470	X_4925470_SNP [dm3] X_5031437_SNP [dm6]	A	C	1.623e^-8	1.171e^-4	INTRON CR44833
X	4925482	X_4925482_SNP [dm3] X_5031449_SNP [dm6]	T	A	1.623e^-8	1.171e^-4	INTRON CR44833
2L	4695543	2L_4695543_SNP [dm3] 2L_4695543_SNP [dm6]	G	C	1.632e^-8	1.173e^-4	INTRON CG34351
2R	14441586	2R_14441586_SNP [dm3] 2R_18554081_SNP [dm6]	C	T	1.665e^-8	1.192e^-4	DOWNSTREAM GEFmeso INTERGENIC
3L	13709416	3L_13709416_SNP [dm3] 3L_13716316_SNP [dm6]	T	A	1.674e^-8	1.194e^-4	INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_chinmo mE1_TFBS_HSA
3R	7533751	3R_7533751_SNP [dm3] 3R_11708029_SNP [dm6]	C	T	1.715e^-8	1.214e^-4	INTERGENIC
3R	6557026	3R_6557026_SNP [dm3] 3R_10731304_SNP [dm6]	T	A	1.715e^-8	1.214e^-4	INTERGENIC
3L	2841371	3L_2841371_SNP [dm3] 3L_2841371_SNP [dm6]	G	T	1.741e^-8	1.228e^-4	INTRON CG43444
3L	19639470	3L_19639470_SNP [dm3] 3L_19646370_SNP [dm6]	C	A	1.756e^-8	1.234e^-4	DOWNSTREAM Oat INTERGENIC	insulator Insulator_Class_II.mE01
3L	7727397	3L_7727397_SNP [dm3] 3L_7734297_SNP [dm6]	C	A	1.810e^-8	1.267e^-4	INTRON CG32373 & 1 other
3L	2835072	3L_2835072_SNP [dm3] 3L_2835072_SNP [dm6]	T	A	1.835e^-8	1.280e^-4	INTRON CG43444
3R	7218700	3R_7218700_SNP [dm3] 3R_11392978_SNP [dm6]	A	G	1.851e^-8	1.286e^-4	UTR_3_PRIME pros	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	13928655	2L_13928655_SNP [dm3] 2L_13928655_SNP [dm6]	A	G	1.867e^-8	1.292e^-4	INTRON Ance-3
3L	7724147	3L_7724147_SNP [dm3] 3L_7731047_SNP [dm6]	G	A	1.876e^-8	1.293e^-4	NON_SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	14441585	2R_14441585_SNP [dm3] 2R_18554080_SNP [dm6]	G	T	1.882e^-8	1.293e^-4	DOWNSTREAM GEFmeso INTERGENIC
2R	14220469	2R_14220469_SNP [dm3] 2R_18332964_SNP [dm6]	G	T	1.951e^-8	1.336e^-4	INTRON sbb
3R	26775901	3R_26775901_SNP [dm3] 3R_30950179_SNP [dm6]	G	A	1.965e^-8	1.339e^-4	INTERGENIC
3R	14626440	3R_14626440_SNP [dm3] 3R_18800718_SNP [dm6]	G	C	1.973e^-8	1.339e^-4	UTR_3_PRIME CG18208
X	8006849	X_8006849_SNP [dm3] X_8112816_SNP [dm6]	G	T	1.983e^-8	1.339e^-4	INTRON Gclc
2R	7941167	2R_7941167_DEL [dm3] 2R_12053662_DEL [dm6]	ACA	A	1.984e^-8	1.339e^-4	UTR_3_PRIME CG44314 INTRON CG44314	TF binding site mE1_TFBS_cad
2R	8243303	2R_8243303_SNP [dm3] 2R_12355798_SNP [dm6]	C	T	2.008e^-8	1.346e^-4	SPLICE_SITE_REGION CG30049 DOWNSTREAM CG30047 INTRON CG30049
2R	8242331	2R_8242331_SNP [dm3] 2R_12354826_SNP [dm6]	T	G	2.009e^-8	1.346e^-4	SYNONYMOUS_CODING CG30047 UPSTREAM CG30049	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	16048851	3R_16048851_SNP [dm3] 3R_20223129_SNP [dm6]	C	A	2.068e^-8	1.380e^-4	INTRON Nlg4	TF binding site BDTNP1_TFBS_twi
2L	9987148	2L_9987148_SNP [dm3] 2L_9987148_SNP [dm6]	G	T	2.091e^-8	1.391e^-4	INTRON bib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9553382	2R_9553382_SNP [dm3] 2R_13665877_SNP [dm6]	A	T	2.131e^-8	1.410e^-4	NON_SYNONYMOUS_CODING CG13337 INTRON fas
3R	10426035	3R_10426035_SNP [dm3] 3R_14600313_SNP [dm6]	T	A	2.135e^-8	1.410e^-4	INTRON stumps	TF binding site mE1_TFBS_cad
2R	2873579	2R_2873579_SNP [dm3] 2R_6986074_SNP [dm6]	A	T	2.291e^-8	1.508e^-4	UTR_5_PRIME CG17002 UPSTREAM vimar & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	4844494	3L_4844494_SNP [dm3] 3L_4844494_SNP [dm6]	C	T	2.306e^-8	1.512e^-4	INTERGENIC
2R	18533926	2R_18533926_SNP [dm3] 2R_22646421_SNP [dm6]	C	T	2.344e^-8	1.528e^-4	UPSTREAM CG2852 DOWNSTREAM CG30195 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_HSA
3R	11946768	3R_11946768_SNP [dm3] 3R_16121046_SNP [dm6]	G	A	2.346e^-8	1.528e^-4	INTRON Sb	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
X	15695722	X_15695722_SNP [dm3] X_15801689_SNP [dm6]	G	A	2.366e^-8	1.536e^-4	SYNONYMOUS_CODING PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10813824	3R_10813824_SNP [dm3] 3R_14988102_SNP [dm6]	C	G	2.396e^-8	1.547e^-4	INTERGENIC
2R	11342085	2R_11342085_SNP [dm3] 2R_15454580_SNP [dm6]	C	T	2.400e^-8	1.547e^-4	INTRON CG43729
3L	2835208	3L_2835208_SNP [dm3] 3L_2835208_SNP [dm6]	A	T	2.425e^-8	1.548e^-4	INTRON CG43444
3R	3325388	3R_3325388_SNP [dm3] 3R_7499666_SNP [dm6]	T	A	2.427e^-8	1.548e^-4	INTRON alpha-Est9
3R	3325390	3R_3325390_SNP [dm3] 3R_7499668_SNP [dm6]	C	T	2.427e^-8	1.548e^-4	INTRON alpha-Est9
2R	8717885	2R_8717885_SNP [dm3] 2R_12830380_SNP [dm6]	C	A	2.497e^-8	1.588e^-4	INTERGENIC
3L	20516735	3L_20516735_SNP [dm3] 3L_20523635_SNP [dm6]	C	A	2.582e^-8	1.636e^-4	SYNONYMOUS_CODING CG4825
X	8055503	X_8055503_SNP [dm3] X_8161470_SNP [dm6]	A	G	2.634e^-8	1.663e^-4	UTR_3_PRIME CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6843738	3R_6843738_SNP [dm3] 3R_11018016_SNP [dm6]	G	A	2.687e^-8	1.691e^-4	INTRON CG34114
3L	14918139	3L_14918139_SNP [dm3] 3L_14925039_SNP [dm6]	A	G	2.710e^-8	1.700e^-4	INTRON DCX-EMAP
2R	10790617	2R_10790617_SNP [dm3] 2R_14903112_SNP [dm6]	A	C	2.731e^-8	1.703e^-4	DOWNSTREAM Cyp317a1 INTRON CG10249
3L	968622	3L_968622_SNP [dm3] 3L_968622_SNP [dm6]	C	T	2.733e^-8	1.703e^-4	INTRON Glut1
3L	20542164	3L_20542164_SNP [dm3] 3L_20549064_SNP [dm6]	C	T	2.841e^-8	1.765e^-4	INTERGENIC
3L	16605657	3L_16605657_SNP [dm3] 3L_16612557_SNP [dm6]	A	C	2.878e^-8	1.780e^-4	UTR_5_PRIME CG4101 UPSTREAM Su_P_ DOWNSTREAM Mo25	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3R	5643145	3R_5643145_SNP [dm3] 3R_9817423_SNP [dm6]	A	T	2.885e^-8	1.780e^-4	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
3L	18217533	3L_18217533_SNP [dm3] 3L_18224433_SNP [dm6]	G	T	2.898e^-8	1.782e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
X	15962453	X_15962453_SNP [dm3] X_16068420_SNP [dm6]	G	C	2.916e^-8	1.788e^-4	INTRON dpr18	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	14666995	2R_14666995_INS [dm3] 2R_18779490_INS [dm6]	A	AG	2.986e^-8	1.825e^-4	INTERGENIC
X	20703762	X_20703762_SNP [dm3] X_20832735_SNP [dm6]	C	T	2.998e^-8	1.825e^-4	INTRON shakB
3R	14442015	3R_14442015_SNP [dm3] 3R_18616293_SNP [dm6]	T	G	3.060e^-8	1.846e^-4	DOWNSTREAM CG7695 INTRON qin & 1 other
2R	14668063	2R_14668063_SNP [dm3] 2R_18780558_SNP [dm6]	G	T	3.061e^-8	1.846e^-4	INTERGENIC
2R	14668210	2R_14668210_SNP [dm3] 2R_18780705_SNP [dm6]	T	C	3.061e^-8	1.846e^-4	INTERGENIC
3R	6093076	3R_6093076_SNP [dm3] 3R_10267354_SNP [dm6]	C	A	3.089e^-8	1.857e^-4	INTRON CG43143	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	10343234	3R_10343234_SNP [dm3] 3R_14517512_SNP [dm6]	C	A	3.139e^-8	1.881e^-4	DOWNSTREAM CG34273 INTRON Pde6
3L	3370072	3L_3370072_SNP [dm3] 3L_3370072_SNP [dm6]	C	T	3.150e^-8	1.882e^-4	DOWNSTREAM YT521-B & 1 other INTERGENIC
2R	8191260	2R_8191260_SNP [dm3] 2R_12303755_SNP [dm6]	T	G	3.187e^-8	1.898e^-4	NON_SYNONYMOUS_CODING SIP2 UTR_3_PRIME SIP2
3R	4783935	3R_4783935_SNP [dm3] 3R_8958213_SNP [dm6]	C	A	3.233e^-8	1.919e^-4	INTRON CG11966	TF binding site mE1_TFBS_cad
3R	10158699	3R_10158699_SNP [dm3] 3R_14332977_SNP [dm6]	T	A	3.288e^-8	1.940e^-4	INTRON NK7.1
2R	8221527	2R_8221527_INS [dm3] 2R_12334022_INS [dm6]	T	TT	3.295e^-8	1.940e^-4	UPSTREAM tRNA:CR30249 DOWNSTREAM tRNA:CR30250 & 2 others INTERGENIC
3L	7700663	3L_7700663_SNP [dm3] 3L_7707563_SNP [dm6]	C	T	3.330e^-8	1.940e^-4	INTRON CG32373 & 1 other	TF binding site mE1_TFBS_chinmo
2R	17796825	2R_17796825_SNP [dm3] 2R_21909320_SNP [dm6]	C	T	3.335e^-8	1.940e^-4	INTRON Fili
3L	16561451	3L_16561451_SNP [dm3] 3L_16568351_SNP [dm6]	T	C	3.352e^-8	1.940e^-4	INTRON Mipp1
2L	2650060	2L_2650060_SNP [dm3] 2L_2650060_SNP [dm6]	A	C	3.361e^-8	1.940e^-4	SYNONYMOUS_CODING CG33125
3R	10338558	3R_10338558_SNP [dm3] 3R_14512836_SNP [dm6]	A	G	3.362e^-8	1.940e^-4	DOWNSTREAM mRpL11 INTRON CG8461	TF binding site mE1_TFBS_sens
3R	10338786	3R_10338786_SNP [dm3] 3R_14513064_SNP [dm6]	T	C	3.362e^-8	1.940e^-4	SYNONYMOUS_CODING CG8461 DOWNSTREAM mRpL11 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_sens
3R	10339869	3R_10339869_SNP [dm3] 3R_14514147_SNP [dm6]	T	G	3.362e^-8	1.940e^-4	UTR_3_PRIME Pde6 UPSTREAM CG8461	TF binding site mE1_TFBS_HSA
3L	3370336	3L_3370336_SNP [dm3] 3L_3370336_SNP [dm6]	A	T	3.432e^-8	1.975e^-4	DOWNSTREAM YT521-B & 1 other INTERGENIC
3R	10340179	3R_10340179_SNP [dm3] 3R_14514457_SNP [dm6]	C	G	3.452e^-8	1.977e^-4	UTR_3_PRIME Pde6 UPSTREAM CG8461
3R	26163159	3R_26163159_SNP [dm3] 3R_30337437_SNP [dm6]	A	C	3.458e^-8	1.977e^-4	INTRON hdc	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	1072668	X_1072668_SNP [dm3] X_1178635_SNP [dm6]	C	T	3.467e^-8	1.977e^-4	INTERGENIC
3L	8965594	3L_8965594_SNP [dm3] 3L_8972494_SNP [dm6]	G	A	3.504e^-8	1.992e^-4	SYNONYMOUS_CODING pix DOWNSTREAM CG5026	TF binding site mE1_TFBS_sens
3L	13263788	3L_13263788_SNP [dm3] 3L_13270688_SNP [dm6]	T	A	3.562e^-8	2.018e^-4	INTRON caps
2L	1852176	2L_1852176_SNP [dm3] 2L_1852176_SNP [dm6]	A	G	3.623e^-8	2.047e^-4	INTRON wry
3L	2048931	3L_2048931_SNP [dm3] 3L_2048931_SNP [dm6]	A	G	3.674e^-8	2.069e^-4	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
2L	20029797	2L_20029797_SNP [dm3] 2L_20029797_SNP [dm6]	C	A	3.696e^-8	2.073e^-4	INTRON sNPF
2R	8157022	2R_8157022_SNP [dm3] 2R_12269517_SNP [dm6]	T	C	3.702e^-8	2.073e^-4	INTRON Cam
2L	10564884	2L_10564884_SNP [dm3] 2L_10564884_SNP [dm6]	C	A	3.785e^-8	2.113e^-4	INTRON Trim9
3L	2401064	3L_2401064_SNP [dm3] 3L_2401064_SNP [dm6]	T	C	3.871e^-8	2.154e^-4	INTRON CG45186
2L	1850492	2L_1850492_SNP [dm3] 2L_1850492_SNP [dm6]	A	T	3.918e^-8	2.168e^-4	INTRON wry
3L	16581566	3L_16581566_SNP [dm3] 3L_16588466_SNP [dm6]	C	G	3.938e^-8	2.168e^-4	UPSTREAM l_3_73Ah DOWNSTREAM CG32163 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
X	13327474	X_13327474_DEL [dm3] X_13433441_DEL [dm6]	TT	T	3.938e^-8	2.168e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	14062823	3L_14062823_SNP [dm3] 3L_14069723_SNP [dm6]	G	C	3.941e^-8	2.168e^-4	INTRON CG32138
3R	26093595	3R_26093595_SNP [dm3] 3R_30267873_SNP [dm6]	G	A	4.008e^-8	2.198e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
X	13327492	X_13327492_SNP [dm3] X_13433459_SNP [dm6]	T	C	4.060e^-8	2.220e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	4069195	3R_4069195_SNP [dm3] 3R_8243473_SNP [dm6]	G	A	4.096e^-8	2.233e^-4	SYNONYMOUS_CODING CG9636 UPSTREAM CG33722 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_h mE1_TFBS_HSA
2R	17595074	2R_17595074_SNP [dm3] 2R_21707569_SNP [dm6]	A	G	4.116e^-8	2.238e^-4	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	25888190	3R_25888190_SNP [dm3] 3R_30062468_SNP [dm6]	T	A	4.164e^-8	2.257e^-4	UPSTREAM sima INTRON sima
3R	5704508	3R_5704508_SNP [dm3] 3R_9878786_SNP [dm6]	T	G	4.188e^-8	2.257e^-4	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	16161029	2L_16161029_SNP [dm3] 2L_16161029_SNP [dm6]	G	T	4.188e^-8	2.257e^-4	INTERGENIC
2R	17593333	2R_17593333_SNP [dm3] 2R_21705828_SNP [dm6]	A	G	4.201e^-8	2.258e^-4	INTRON HmgZ & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	8832702	2R_8832702_SNP [dm3] 2R_12945197_SNP [dm6]	G	A	4.496e^-8	2.409e^-4	UTR_5_PRIME Mdr49 UPSTREAM Mdr49
3R	10682558	3R_10682558_SNP [dm3] 3R_14856836_SNP [dm6]	G	C	4.593e^-8	2.454e^-4	INTRON btsz
2L	2080943	2L_2080943_SNP [dm3] 2L_2080943_SNP [dm6]	G	A	4.635e^-8	2.470e^-4	SYNONYMOUS_CODING CG12674 INTRON dpr3
2L	8369317	2L_8369317_SNP [dm3] 2L_8369317_SNP [dm6]	C	A	4.737e^-8	2.517e^-4	SYNONYMOUS_CODING Pp2A-29B INTRON Pp2A-29B	TF binding site mE1_TFBS_cad
2L	13928673	2L_13928673_SNP [dm3] 2L_13928673_SNP [dm6]	T	A	4.828e^-8	2.558e^-4	INTRON Ance-3
2L	13193426	2L_13193426_SNP [dm3] 2L_13193426_SNP [dm6]	G	T	4.926e^-8	2.601e^-4	INTRON Edem2	TF binding site mE1_TFBS_cad
3L	15614744	3L_15614744_SNP [dm3] 3L_15621644_SNP [dm6]	C	A	4.937e^-8	2.601e^-4	INTRON comm3 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2L	18050267	2L_18050267_DEL [dm3] 2L_18050267_DEL [dm6]	AGCCCGTCGCA...	A	4.956e^-8	2.604e^-4	INTRON rdo
3L	16142389	3L_16142389_SNP [dm3] 3L_16149289_SNP [dm6]	C	T	4.977e^-8	2.607e^-4	SPLICE_SITE_DONOR CG5151 INTRON CG5151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	19974691	X_19974691_SNP [dm3] X_20080658_SNP [dm6]	T	G	5.060e^-8	2.644e^-4	INTERGENIC
X	20739395	X_20739395_SNP [dm3] X_20868368_SNP [dm6]	T	C	5.141e^-8	2.679e^-4	SYNONYMOUS_CODING CG1314 INTRON shakB
3R	7215596	3R_7215596_SNP [dm3] 3R_11389874_SNP [dm6]	T	C	5.204e^-8	2.704e^-4	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	12977694	3L_12977694_SNP [dm3] 3L_12984594_SNP [dm6]	G	A	5.296e^-8	2.742e^-4	INTERGENIC
3R	9600611	3R_9600611_SNP [dm3] 3R_13774889_SNP [dm6]	C	A	5.312e^-8	2.742e^-4	INTRON CG9297
3R	14438631	3R_14438631_SNP [dm3] 3R_18612909_SNP [dm6]	G	T	5.338e^-8	2.742e^-4	INTRON qin & 1 other
2R	19546203	2R_19546203_SNP [dm3] 2R_23658680_SNP [dm6]	T	A	5.361e^-8	2.742e^-4	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	22115364	3R_22115364_SNP [dm3] 3R_26289642_SNP [dm6]	G	A	5.362e^-8	2.742e^-4	INTERGENIC
X	20703093	X_20703093_SNP [dm3] X_20832066_SNP [dm6]	T	C	5.377e^-8	2.742e^-4	INTRON shakB
2R	14666124	2R_14666124_SNP [dm3] 2R_18778619_SNP [dm6]	A	T	5.390e^-8	2.742e^-4	INTERGENIC
3R	14351116	3R_14351116_SNP [dm3] 3R_18525394_SNP [dm6]	A	T	5.393e^-8	2.742e^-4	INTRON fru	TF binding site mE1_TFBS_inv
3R	12087448	3R_12087448_SNP [dm3] 3R_16261726_SNP [dm6]	G	A	5.445e^-8	2.760e^-4	UTR_3_PRIME bor	TF binding site mE1_TFBS_cad
2R	14665431	2R_14665431_SNP [dm3] 2R_18777926_SNP [dm6]	C	A	5.493e^-8	2.777e^-4	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
2L	9662702	2L_9662702_SNP [dm3] 2L_9662702_SNP [dm6]	T	A	5.517e^-8	2.782e^-4	INTERGENIC
3R	5146508	3R_5146508_SNP [dm3] 3R_9320786_SNP [dm6]	C	T	5.540e^-8	2.786e^-4	UPSTREAM HP1e INTRON CG8861
3R	15258839	3R_15258839_SNP [dm3] 3R_19433117_SNP [dm6]	T	C	5.594e^-8	2.805e^-4	INTRON CG31221
2R	17023079	2R_17023079_SNP [dm3] 2R_21135574_SNP [dm6]	T	G	5.637e^-8	2.820e^-4	INTRON Magi	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	25168509	3R_25168509_SNP [dm3] 3R_29342787_SNP [dm6]	A	T	5.687e^-8	2.837e^-4	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26829474	3R_26829474_SNP [dm3] 3R_31003752_SNP [dm6]	T	C	5.714e^-8	2.843e^-4	INTRON 5-HT7
3L	20490699	3L_20490699_SNP [dm3] 3L_20497599_SNP [dm6]	T	A	5.746e^-8	2.851e^-4	UTR_5_PRIME CG32425 DOWNSTREAM CG6020 INTRON CG32425	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	16138187	3L_16138187_SNP [dm3] 3L_16145087_SNP [dm6]	T	A	5.762e^-8	2.852e^-4	INTRON CG5151
3R	3837564	3R_3837564_SNP [dm3] 3R_8011842_SNP [dm6]	T	C	5.780e^-8	2.853e^-4	DOWNSTREAM CG3223 INTRON CG10435
3L	16084463	3L_16084463_SNP [dm3] 3L_16091363_SNP [dm6]	A	C	5.809e^-8	2.860e^-4	UPSTREAM CG5235 INTRON ClC-c	TF binding site BDTNP1_TFBS_dl
2R	7926953	2R_7926953_SNP [dm3] 2R_12039448_SNP [dm6]	C	T	5.951e^-8	2.915e^-4	SYNONYMOUS_CODING RpIII128 DOWNSTREAM 128up	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	4568985	3L_4568985_SNP [dm3] 3L_4568985_SNP [dm6]	A	C	5.953e^-8	2.915e^-4	INTRON CG42540
X	3620206	X_3620206_DEL [dm3] X_3726173_DEL [dm6]	TT	T	5.968e^-8	2.915e^-4	INTRON tlk	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA
3L	21845975	3L_21845975_SNP [dm3] 3L_21852875_SNP [dm6]	T	C	6.199e^-8	3.011e^-4	INTRON mub
3R	25888255	3R_25888255_SNP [dm3] 3R_30062533_SNP [dm6]	G	T	6.199e^-8	3.011e^-4	UPSTREAM sima INTRON sima
3L	7723173	3L_7723173_SNP [dm3] 3L_7730073_SNP [dm6]	G	A	6.213e^-8	3.011e^-4	SYNONYMOUS_CODING CG8492 INTRON CG32373
3L	16139462	3L_16139462_SNP [dm3] 3L_16146362_SNP [dm6]	G	A	6.288e^-8	3.036e^-4	INTRON CG5151	TF binding site mE1_TFBS_Trl
3R	15261408	3R_15261408_SNP [dm3] 3R_19435686_SNP [dm6]	T	A	6.310e^-8	3.036e^-4	INTRON CG31221
3L	19636210	3L_19636210_SNP [dm3] 3L_19643110_SNP [dm6]	G	C	6.313e^-8	3.036e^-4	UPSTREAM CG8786 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	4739051	3L_4739051_SNP [dm3] 3L_4739051_SNP [dm6]	G	A	6.360e^-8	3.051e^-4	INTRON RhoGEF64C
3L	22105924	3L_22105924_SNP [dm3] 3L_22112824_SNP [dm6]	A	C	6.555e^-8	3.136e^-4	INTERGENIC
3L	10465594	3L_10465594_SNP [dm3] 3L_10472494_SNP [dm6]	G	C	6.579e^-8	3.140e^-4	INTERGENIC
2R	14665052	2R_14665052_INS [dm3] 2R_18777547_INS [dm6]	A	ATGAGT	6.600e^-8	3.142e^-4	UPSTREAM CG15093 DOWNSTREAM CR43964 INTERGENIC
3R	26138439	3R_26138439_SNP [dm3] 3R_30312717_SNP [dm6]	G	A	6.622e^-8	3.144e^-4	INTRON hdc	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
3L	12646317	3L_12646317_SNP [dm3] 3L_12653217_SNP [dm6]	G	A	6.887e^-8	3.262e^-4	UPSTREAM CR43431 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_sens
X	8800739	X_8800739_SNP [dm3] X_8906706_SNP [dm6]	T	C	6.910e^-8	3.265e^-4	UPSTREAM e_r_ & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	12061270	3R_12061270_SNP [dm3] 3R_16235548_SNP [dm6]	C	T	7.124e^-8	3.357e^-4	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3L	22774795	3L_22774795_SNP [dm3] 3L_22781695_SNP [dm6]	T	G	7.243e^-8	3.400e^-4	INTRON SPoCk
X	10938828	X_10938828_SNP [dm3] X_11044795_SNP [dm6]	G	A	7.250e^-8	3.400e^-4	UTR_5_PRIME CG11160	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	7940905	2R_7940905_SNP [dm3] 2R_12053400_SNP [dm6]	G	A	7.269e^-8	3.400e^-4	INTRON CG44314
2R	6275725	2R_6275725_SNP [dm3] 2R_10388220_SNP [dm6]	G	T	7.369e^-8	3.438e^-4	SYNONYMOUS_CODING CG42732 INTRON CG42732
X	15462631	X_15462631_SNP [dm3] X_15568598_SNP [dm6]	G	T	7.408e^-8	3.448e^-4	UPSTREAM CG7860 INTERGENIC
3R	25750835	3R_25750835_SNP [dm3] 3R_29925113_SNP [dm6]	T	G	7.432e^-8	3.450e^-4	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
3R	7193046	3R_7193046_SNP [dm3] 3R_11367324_SNP [dm6]	A	G	7.451e^-8	3.451e^-4	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16989191	X_16989191_SNP [dm3] X_17095158_SNP [dm6]	T	G	7.523e^-8	3.472e^-4	INTRON CG16700 & 1 other
3R	27035789	3R_27035789_SNP [dm3] 3R_31210067_SNP [dm6]	T	G	7.538e^-8	3.472e^-4	DOWNSTREAM Zwilch INTRON chp
2L	10572819	2L_10572819_SNP [dm3] 2L_10572819_SNP [dm6]	T	A	7.557e^-8	3.472e^-4	INTRON Trim9
3R	11596755	3R_11596755_SNP [dm3] 3R_15771033_SNP [dm6]	A	C	7.572e^-8	3.472e^-4	INTERGENIC
3L	10446405	3L_10446405_SNP [dm3] 3L_10453305_SNP [dm6]	G	A	7.604e^-8	3.479e^-4	INTERGENIC
X	4923876	X_4923876_SNP [dm3] X_5029843_SNP [dm6]	G	A	7.676e^-8	3.503e^-4	INTRON CR44833
X	15465108	X_15465108_SNP [dm3] X_15571075_SNP [dm6]	G	A	7.716e^-8	3.513e^-4	SYNONYMOUS_CODING CG15643 DOWNSTREAM CG7860	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3R	12061501	3R_12061501_SNP [dm3] 3R_16235779_SNP [dm6]	G	A	7.737e^-8	3.514e^-4	INTRON tara	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10454759	3R_10454759_SNP [dm3] 3R_14629037_SNP [dm6]	A	G	7.799e^-8	3.525e^-4	INTRON CG7886	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10454764	3R_10454764_SNP [dm3] 3R_14629042_SNP [dm6]	A	T	7.799e^-8	3.525e^-4	INTRON CG7886	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16031714	2L_16031714_SNP [dm3] 2L_16031714_SNP [dm6]	A	G	7.974e^-8	3.588e^-4	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
2R	14667195	2R_14667195_SNP [dm3] 2R_18779690_SNP [dm6]	T	C	7.977e^-8	3.588e^-4	INTERGENIC
2R	14666047	2R_14666047_SNP [dm3] 2R_18778542_SNP [dm6]	G	A	8.010e^-8	3.594e^-4	INTERGENIC
3L	16142430	3L_16142430_SNP [dm3] 3L_16149330_SNP [dm6]	T	C	8.279e^-8	3.706e^-4	UPSTREAM CG5151 INTRON CG5151	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad
2R	18540810	2R_18540810_SNP [dm3] 2R_22653305_SNP [dm6]	C	T	8.441e^-8	3.770e^-4	SYNONYMOUS_CODING Cyp6d2 UTR_3_PRIME nsr DOWNSTREAM nsr	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	14667081	2R_14667081_SNP [dm3] 2R_18779576_SNP [dm6]	C	A	8.866e^-8	3.950e^-4	INTERGENIC
3L	16596530	3L_16596530_SNP [dm3] 3L_16603430_SNP [dm6]	T	A	8.894e^-8	3.953e^-4	UPSTREAM CR18217 INTRON CG32164	TF binding site mE1_TFBS_cad
2R	17024046	2R_17024046_SNP [dm3] 2R_21136541_SNP [dm6]	T	G	8.964e^-8	3.975e^-4	INTRON Magi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	12424524	3R_12424524_SNP [dm3] 3R_16598802_SNP [dm6]	A	T	8.987e^-8	3.976e^-4	SYNONYMOUS_CODING CG10345
X	4924527	X_4924527_DEL [dm3] X_5030494_DEL [dm6]	GGCACGTAACA...	G	9.104e^-8	4.018e^-4	INTRON CR44833
3L	16622778	3L_16622778_SNP [dm3] 3L_16629678_SNP [dm6]	C	G	9.223e^-8	4.055e^-4	INTRON Abl
3R	25909542	3R_25909542_SNP [dm3] 3R_30083820_SNP [dm6]	T	G	9.241e^-8	4.055e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
3R	10161254	3R_10161254_SNP [dm3] 3R_14335532_SNP [dm6]	G	C	9.253e^-8	4.055e^-4	INTRON NK7.1
3L	3951594	3L_3951594_SNP [dm3] 3L_3951594_SNP [dm6]	T	A	9.276e^-8	4.056e^-4	INTRON CG14984
3R	14626385	3R_14626385_SNP [dm3] 3R_18800663_SNP [dm6]	T	C	9.444e^-8	4.105e^-4	UTR_3_PRIME CG18208
3R	3804025	3R_3804025_SNP [dm3] 3R_7978303_SNP [dm6]	G	T	9.454e^-8	4.105e^-4	UPSTREAM CD98hc & 1 other INTRON CD98hc	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	5590589	X_5590589_SNP [dm3] X_5696556_SNP [dm6]	T	C	9.456e^-8	4.105e^-4	UPSTREAM CR42794 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3R	5709067	3R_5709067_SNP [dm3] 3R_9883345_SNP [dm6]	C	G	9.545e^-8	4.135e^-4	INTRON Glut4EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	26571339	3R_26571339_SNP [dm3] 3R_30745617_SNP [dm6]	A	T	9.674e^-8	4.181e^-4	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	5080553	2L_5080553_SNP [dm3] 2L_5080553_SNP [dm6]	G	A	9.701e^-8	4.183e^-4	INTRON pgant5
2L	20029631	2L_20029631_SNP [dm3] 2L_20029631_SNP [dm6]	G	A	9.730e^-8	4.186e^-4	INTRON sNPF
X	15695269	X_15695269_SNP [dm3] X_15801236_SNP [dm6]	C	A	9.861e^-8	4.203e^-4	UTR_3_PRIME PGRP-LE DOWNSTREAM CG15602	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	15696475	X_15696475_SNP [dm3] X_15802442_SNP [dm6]	T	A	9.861e^-8	4.203e^-4	SPLICE_SITE_REGION PGRP-LE INTRON PGRP-LE	TF binding site mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens
2R	14662384	2R_14662384_SNP [dm3] 2R_18774879_SNP [dm6]	G	A	9.866e^-8	4.203e^-4	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2R	2860653	2R_2860653_SNP [dm3] 2R_6973148_SNP [dm6]	G	T	9.881e^-8	4.203e^-4	NON_SYNONYMOUS_CODING Cyp6u1 DOWNSTREAM CG30157	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
2R	8221542	2R_8221542_SNP [dm3] 2R_12334037_SNP [dm6]	C	G	9.882e^-8	4.203e^-4	UPSTREAM tRNA:CR30249 DOWNSTREAM tRNA:CR30250 & 2 others INTERGENIC
X	10112285	X_10112285_SNP [dm3] X_10218252_SNP [dm6]	C	A	9.919e^-8	4.209e^-4	SYNONYMOUS_CODING CG15308 DOWNSTREAM l_1_G0230 EXON CR45629
2R	6343678	2R_6343678_INS [dm3] 2R_10456173_INS [dm6]	T	TGGTAT	1.007e^-7	4.264e^-4	INTRON Galphao & 1 other	TF binding site mE1_TFBS_inv
2L	19838632	2L_19838632_SNP [dm3] 2L_19838632_SNP [dm6]	G	C	1.020e^-7	4.309e^-4	INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	2036298	3L_2036298_SNP [dm3] 3L_2036298_SNP [dm6]	G	C	1.042e^-7	4.393e^-4	INTERGENIC
3L	18647094	3L_18647094_SNP [dm3] 3L_18653994_SNP [dm6]	A	T	1.057e^-7	4.446e^-4	INTRON MYPT-75D	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18541344	2R_18541344_SNP [dm3] 2R_22653839_SNP [dm6]	G	T	1.061e^-7	4.453e^-4	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
3R	26571302	3R_26571302_SNP [dm3] 3R_30745580_SNP [dm6]	C	T	1.073e^-7	4.492e^-4	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	10754491	3R_10754491_SNP [dm3] 3R_14928769_SNP [dm6]	T	A	1.077e^-7	4.500e^-4	INTERGENIC
2R	3771309	2R_3771309_SNP [dm3] 2R_7883804_SNP [dm6]	G	T	1.090e^-7	4.541e^-4	INTRON Dgk
3L	5033258	3L_5033258_SNP [dm3] 3L_5033258_SNP [dm6]	C	G	1.104e^-7	4.593e^-4	INTRON Con	TF binding site mE1_TFBS_inv
3R	26571515	3R_26571515_SNP [dm3] 3R_30745793_SNP [dm6]	C	T	1.109e^-7	4.601e^-4	SYNONYMOUS_CODING Npc2h UPSTREAM Npc2g DOWNSTREAM CR43238	TF binding site mE1_TFBS_cad
3L	16138835	3L_16138835_DEL [dm3] 3L_16145735_DEL [dm6]	CC	C	1.136e^-7	4.702e^-4	INTRON CG5151
X	8837394	X_8837394_SNP [dm3] X_8943361_SNP [dm6]	T	C	1.145e^-7	4.732e^-4	INTRON rdgA
X	8057152	X_8057152_SNP [dm3] X_8163119_SNP [dm6]	T	A	1.165e^-7	4.796e^-4	UPSTREAM CR45536 & 1 other INTERGENIC
3R	26571301	3R_26571301_SNP [dm3] 3R_30745579_SNP [dm6]	T	A	1.166e^-7	4.796e^-4	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	11173488	X_11173488_SNP [dm3] X_11279455_SNP [dm6]	A	G	1.183e^-7	4.844e^-4	INTRON CG44422
3R	5643118	3R_5643118_SNP [dm3] 3R_9817396_SNP [dm6]	G	A	1.185e^-7	4.844e^-4	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
3R	5643120	3R_5643120_SNP [dm3] 3R_9817398_SNP [dm6]	T	C	1.185e^-7	4.844e^-4	UPSTREAM CG16904 DOWNSTREAM CG9459 INTERGENIC
3L	13368268	3L_13368268_SNP [dm3] 3L_13375168_SNP [dm6]	A	G	1.203e^-7	4.905e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	13396396	3L_13396396_SNP [dm3] 3L_13403296_SNP [dm6]	G	A	1.210e^-7	4.925e^-4	INTERGENIC	regulatory region REDfly_CRMs silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	13928767	2L_13928767_DEL [dm3] 2L_13928767_DEL [dm6]	AT	A	1.219e^-7	4.949e^-4	INTRON Ance-3
2R	11300549	2R_11300549_SNP [dm3] 2R_15413044_SNP [dm6]	G	T	1.223e^-7	4.949e^-4	INTRON CG43729
2R	11300384	2R_11300384_SNP [dm3] 2R_15412879_SNP [dm6]	G	A	1.224e^-7	4.949e^-4	INTRON CG43729
X	21380818	X_21380818_SNP [dm3] X_21509791_SNP [dm6]	G	A	1.233e^-7	4.974e^-4	INTRON CR45082
3R	3412363	3R_3412363_SNP [dm3] 3R_7586641_SNP [dm6]	A	T	1.251e^-7	5.025e^-4	INTRON CG34127
2R	8221545	2R_8221545_SNP [dm3] 2R_12334040_SNP [dm6]	T	C	1.251e^-7	5.025e^-4	UPSTREAM tRNA:CR30249 DOWNSTREAM tRNA:CR30250 & 2 others INTERGENIC
2L	16031728	2L_16031728_SNP [dm3] 2L_16031728_SNP [dm6]	A	T	1.260e^-7	5.051e^-4	INTRON beat-Ic	TF binding site BDTNP1_TFBS_Med
3R	11131231	3R_11131231_SNP [dm3] 3R_15305509_SNP [dm6]	G	A	1.268e^-7	5.070e^-4	SYNONYMOUS_CODING Tm1 DOWNSTREAM Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	17382230	3L_17382230_SNP [dm3] 3L_17389130_SNP [dm6]	T	C	1.280e^-7	5.110e^-4	UPSTREAM CG13731 INTERGENIC
3L	16640906	3L_16640906_DEL [dm3] 3L_16647806_DEL [dm6]	TTGCTGATTTATCTAC...	T	1.297e^-7	5.166e^-4	UTR_5_PRIME Abl DOWNSTREAM Baldspot	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	2871708	2R_2871708_SNP [dm3] 2R_6984203_SNP [dm6]	A	G	1.307e^-7	5.196e^-4	INTRON vimar & 1 other	TF binding site BDTNP1_TFBS_da mE1_TFBS_sens
3R	5244823	3R_5244823_SNP [dm3] 3R_9419101_SNP [dm6]	T	G	1.321e^-7	5.213e^-4	UPSTREAM ps INTRON ps	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Trl
3L	12614186	3L_12614186_SNP [dm3] 3L_12621086_SNP [dm6]	A	T	1.322e^-7	5.213e^-4	UTR_3_PRIME caup
3L	13078187	3L_13078187_SNP [dm3] 3L_13085087_SNP [dm6]	T	A	1.322e^-7	5.213e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13928686	2L_13928686_SNP [dm3] 2L_13928686_SNP [dm6]	T	A	1.323e^-7	5.213e^-4	INTRON Ance-3
2R	8242807	2R_8242807_SNP [dm3] 2R_12355302_SNP [dm6]	C	A	1.328e^-7	5.220e^-4	UTR_3_PRIME CG30047 UPSTREAM CG30049
3R	6843079	3R_6843079_SNP [dm3] 3R_11017357_SNP [dm6]	C	T	1.340e^-7	5.257e^-4	INTRON CG34114
3L	14352921	3L_14352921_SNP [dm3] 3L_14359821_SNP [dm6]	A	G	1.370e^-7	5.365e^-4	INTRON fz
2R	7440039	2R_7440039_SNP [dm3] 2R_11552534_SNP [dm6]	T	C	1.377e^-7	5.382e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7652117	2L_7652117_DEL [dm3] 2L_7652117_DEL [dm6]	ATTTTAATTTACTGGGATTA...	A	1.382e^-7	5.388e^-4	INTRON Slob
2R	18351050	2R_18351050_SNP [dm3] 2R_22463545_SNP [dm6]	G	A	1.387e^-7	5.397e^-4	INTRON CG10384	TF binding site mE1_TFBS_chinmo
2R	2860203	2R_2860203_SNP [dm3] 2R_6972698_SNP [dm6]	G	A	1.390e^-7	5.397e^-4	SYNONYMOUS_CODING Cyp6u1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	12141189	3L_12141189_SNP [dm3] 3L_12148089_SNP [dm6]	G	A	1.404e^-7	5.424e^-4	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
3R	26092517	3R_26092517_SNP [dm3] 3R_30266795_SNP [dm6]	G	T	1.405e^-7	5.424e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3R	26571242	3R_26571242_SNP [dm3] 3R_30745520_SNP [dm6]	C	G	1.405e^-7	5.424e^-4	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	18519484	2R_18519484_SNP [dm3] 2R_22631979_SNP [dm6]	G	A	1.411e^-7	5.426e^-4	SYNONYMOUS_CODING CG33143	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	4783948	3R_4783948_SNP [dm3] 3R_8958226_SNP [dm6]	G	T	1.412e^-7	5.426e^-4	INTRON CG11966	TF binding site mE1_TFBS_cad
2R	18463878	2R_18463878_SNP [dm3] 2R_22576373_SNP [dm6]	C	T	1.417e^-7	5.434e^-4	INTRON dnr1
3L	16624055	3L_16624055_SNP [dm3] 3L_16630955_SNP [dm6]	C	T	1.430e^-7	5.476e^-4	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	16088966	3L_16088966_SNP [dm3] 3L_16095866_SNP [dm6]	G	C	1.448e^-7	5.531e^-4	UTR_3_PRIME ClC-c & 1 other DOWNSTREAM ClC-c
2L	13928676	2L_13928676_SNP [dm3] 2L_13928676_SNP [dm6]	A	C	1.473e^-7	5.615e^-4	INTRON Ance-3
3L	18447251	3L_18447251_SNP [dm3] 3L_18454151_SNP [dm6]	G	T	1.477e^-7	5.619e^-4	INTERGENIC
X	8837343	X_8837343_SNP [dm3] X_8943310_SNP [dm6]	C	T	1.480e^-7	5.619e^-4	INTRON rdgA
2L	13928788	2L_13928788_SNP [dm3] 2L_13928788_SNP [dm6]	T	C	1.486e^-7	5.619e^-4	INTRON Ance-3
2L	13928791	2L_13928791_SNP [dm3] 2L_13928791_SNP [dm6]	G	A	1.486e^-7	5.619e^-4	INTRON Ance-3
3R	7196026	3R_7196026_SNP [dm3] 3R_11370304_SNP [dm6]	T	A	1.500e^-7	5.657e^-4	INTRON pros	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
X	8837339	X_8837339_SNP [dm3] X_8943306_SNP [dm6]	A	G	1.502e^-7	5.657e^-4	INTRON rdgA
2R	8155779	2R_8155779_SNP [dm3] 2R_12268274_SNP [dm6]	C	T	1.508e^-7	5.668e^-4	INTRON Cam
2L	13929002	2L_13929002_SNP [dm3] 2L_13929002_SNP [dm6]	G	T	1.513e^-7	5.675e^-4	INTRON Ance-3
3R	25909586	3R_25909586_SNP [dm3] 3R_30083864_SNP [dm6]	C	T	1.516e^-7	5.676e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
2R	11537939	2R_11537939_SNP [dm3] 2R_15650434_SNP [dm6]	A	G	1.529e^-7	5.714e^-4	DOWNSTREAM CG42524 INTRON CG42524
3L	14352974	3L_14352974_SNP [dm3] 3L_14359874_SNP [dm6]	A	T	1.549e^-7	5.765e^-4	INTRON fz
3L	16825286	3L_16825286_SNP [dm3] 3L_16832186_SNP [dm6]	A	T	1.550e^-7	5.765e^-4	INTERGENIC
X	18412485	X_18412485_SNP [dm3] X_18518452_SNP [dm6]	C	T	1.552e^-7	5.765e^-4	INTRON Bx & 1 other	TF binding site mE1_TFBS_HSA
2L	14119106	2L_14119106_SNP [dm3] 2L_14119106_SNP [dm6]	A	G	1.562e^-7	5.791e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
2L	13928872	2L_13928872_SNP [dm3] 2L_13928872_SNP [dm6]	C	T	1.567e^-7	5.792e^-4	INTRON Ance-3
3R	26968389	3R_26968389_SNP [dm3] 3R_31142667_SNP [dm6]	A	T	1.569e^-7	5.792e^-4	INTRON Gycbeta100B
2L	11957528	2L_11957528_SNP [dm3] 2L_11957528_SNP [dm6]	G	T	1.581e^-7	5.827e^-4	EXON CR43314	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20542183	3L_20542183_DEL [dm3] 3L_20549083_DEL [dm6]	TG	T	1.590e^-7	5.836e^-4	INTERGENIC
3L	20542186	3L_20542186_DEL [dm3] 3L_20549086_DEL [dm6]	TTC	T	1.590e^-7	5.836e^-4	INTERGENIC
3R	22722099	3R_22722099_SNP [dm3] 3R_26896377_SNP [dm6]	G	T	1.610e^-7	5.897e^-4	INTRON T48	regulatory region REDfly_CRMs
3L	1326299	3L_1326299_SNP [dm3] 3L_1326299_SNP [dm6]	C	T	1.613e^-7	5.899e^-4	SYNONYMOUS_CODING Myo61F	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10790608	2R_10790608_SNP [dm3] 2R_14903103_SNP [dm6]	C	A	1.652e^-7	6.028e^-4	DOWNSTREAM Cyp317a1 INTRON CG10249
3L	18747898	3L_18747898_SNP [dm3] 3L_18754798_SNP [dm6]	T	C	1.687e^-7	6.142e^-4	INTRON ftz-f1
3R	26979971	3R_26979971_SNP [dm3] 3R_31154249_SNP [dm6]	G	A	1.690e^-7	6.142e^-4	INTRON Gycbeta100B
3L	2045106	3L_2045106_SNP [dm3] 3L_2045106_SNP [dm6]	G	T	1.693e^-7	6.142e^-4	SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
3L	12986406	3L_12986406_SNP [dm3] 3L_12993306_SNP [dm6]	C	T	1.706e^-7	6.176e^-4	INTERGENIC
X	19310017	X_19310017_SNP [dm3] X_19415984_SNP [dm6]	A	C	1.726e^-7	6.238e^-4	INTRON kek5
3L	21408681	3L_21408681_DEL [dm3] 3L_21415581_DEL [dm6]	ATCGCTCGTGAGTGAAGGGT...	A	1.734e^-7	6.253e^-4	INTRON rgn
3L	16624069	3L_16624069_SNP [dm3] 3L_16630969_SNP [dm6]	T	G	1.747e^-7	6.288e^-4	INTRON Abl	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	18554643	2R_18554643_SNP [dm3] 2R_22667138_SNP [dm6]	A	T	1.753e^-7	6.293e^-4	UPSTREAM CG30273 & 2 others DOWNSTREAM CG42867 & 1 other INTERGENIC	TF binding site mE1_TFBS_cad
X	13327491	X_13327491_SNP [dm3] X_13433458_SNP [dm6]	G	A	1.756e^-7	6.293e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	7933301	X_7933301_SNP [dm3] X_8039268_SNP [dm6]	C	G	1.758e^-7	6.293e^-4	UTR_3_PRIME fs_1_h
3R	23545443	3R_23545443_SNP [dm3] 3R_27719721_SNP [dm6]	C	T	1.769e^-7	6.318e^-4	INTERGENIC	TF binding site mE1_TFBS_chinmo
3L	12983911	3L_12983911_SNP [dm3] 3L_12990811_SNP [dm6]	G	A	1.775e^-7	6.328e^-4	INTERGENIC
3L	21803775	3L_21803775_SNP [dm3] 3L_21810675_SNP [dm6]	G	T	1.798e^-7	6.388e^-4	INTRON eg	TF binding site mE1_TFBS_sens
3R	26088686	3R_26088686_SNP [dm3] 3R_30262964_SNP [dm6]	A	T	1.801e^-7	6.388e^-4	INTERGENIC
3R	8369025	3R_8369025_SNP [dm3] 3R_12543303_SNP [dm6]	A	C	1.802e^-7	6.388e^-4	INTRON Octbeta3R
2R	12396964	2R_12396964_SNP [dm3] 2R_16509459_SNP [dm6]	A	G	1.820e^-7	6.409e^-4	INTRON Sema-2a
3L	16625931	3L_16625931_SNP [dm3] 3L_16632831_SNP [dm6]	T	A	1.820e^-7	6.409e^-4	INTRON Abl	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
3R	7215594	3R_7215594_SNP [dm3] 3R_11389872_SNP [dm6]	T	A	1.821e^-7	6.409e^-4	INTRON pros	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl
3L	14206340	3L_14206340_SNP [dm3] 3L_14213240_SNP [dm6]	T	A	1.824e^-7	6.409e^-4	INTRON nuf	TF binding site mE1_TFBS_bab1
3L	2045115	3L_2045115_SNP [dm3] 3L_2045115_SNP [dm6]	T	C	1.826e^-7	6.409e^-4	SPLICE_SITE_REGION sls SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_cad
X	8225353	X_8225353_SNP [dm3] X_8331320_SNP [dm6]	A	G	1.828e^-7	6.409e^-4	INTRON nAChRalpha3
X	12118689	X_12118689_SNP [dm3] X_12224656_SNP [dm6]	C	T	1.845e^-7	6.451e^-4	INTRON Ten-a	TF binding site mE1_TFBS_cad
3L	10463884	3L_10463884_SNP [dm3] 3L_10470784_SNP [dm6]	T	C	1.847e^-7	6.451e^-4	INTERGENIC
3R	25909561	3R_25909561_SNP [dm3] 3R_30083839_SNP [dm6]	C	A	1.862e^-7	6.490e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25909564	3R_25909564_SNP [dm3] 3R_30083842_SNP [dm6]	A	G	1.878e^-7	6.522e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
3R	26979545	3R_26979545_SNP [dm3] 3R_31153823_SNP [dm6]	C	A	1.878e^-7	6.522e^-4	INTRON Gycbeta100B	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	6629030	2R_6629030_SNP [dm3] 2R_10741525_SNP [dm6]	T	A	1.923e^-7	6.668e^-4	INTRON CG33144	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
2L	4695580	2L_4695580_DEL [dm3] 2L_4695580_DEL [dm6]	TT	T	1.937e^-7	6.704e^-4	INTRON CG34351
3L	11912960	3L_11912960_SNP [dm3] 3L_11919860_SNP [dm6]	A	G	1.948e^-7	6.729e^-4	INTRON CG44837
3L	3370662	3L_3370662_SNP [dm3] 3L_3370662_SNP [dm6]	T	C	1.956e^-7	6.732e^-4	UTR_3_PRIME YT521-B DOWNSTREAM Drs & 1 other
2R	14665662	2R_14665662_SNP [dm3] 2R_18778157_SNP [dm6]	T	A	1.956e^-7	6.732e^-4	DOWNSTREAM CR43964 INTERGENIC
3R	14443911	3R_14443911_SNP [dm3] 3R_18618189_SNP [dm6]	A	T	1.972e^-7	6.775e^-4	UPSTREAM CG7695 INTRON qin & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	3895547	3R_3895547_SNP [dm3] 3R_8069825_SNP [dm6]	G	A	1.977e^-7	6.778e^-4	INTRON mAChR-B
3L	16175496	3L_16175496_SNP [dm3] 3L_16182396_SNP [dm6]	G	T	1.996e^-7	6.831e^-4	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	3370116	3L_3370116_SNP [dm3] 3L_3370116_SNP [dm6]	A	G	2.007e^-7	6.858e^-4	DOWNSTREAM YT521-B & 1 other INTERGENIC
2L	11957531	2L_11957531_SNP [dm3] 2L_11957531_SNP [dm6]	T	C	2.021e^-7	6.883e^-4	EXON CR43314	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	20534476	3L_20534476_SNP [dm3] 3L_20541376_SNP [dm6]	C	T	2.023e^-7	6.883e^-4	UPSTREAM Rcd2 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18836445	2R_18836445_SNP [dm3] 2R_22948922_SNP [dm6]	G	T	2.026e^-7	6.883e^-4	INTERGENIC
2L	19993999	2L_19993999_SNP [dm3] 2L_19993999_SNP [dm6]	A	C	2.034e^-7	6.898e^-4	INTRON CG43861	TF binding site mE1_TFBS_chinmo
2L	20505527	2L_20505527_SNP [dm3] 2L_20505527_SNP [dm6]	G	T	2.039e^-7	6.904e^-4	INTERGENIC
3L	16550224	3L_16550224_SNP [dm3] 3L_16557124_SNP [dm6]	T	C	2.050e^-7	6.908e^-4	SYNONYMOUS_CODING CG4229	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8223579	2R_8223579_SNP [dm3] 2R_12336074_SNP [dm6]	C	A	2.051e^-7	6.908e^-4	NON_SYNONYMOUS_CODING CG8490 UPSTREAM tRNA:H:48F & 2 others	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
X	8048928	X_8048928_INS [dm3] X_8154895_INS [dm6]	T	TT	2.051e^-7	6.908e^-4	UTR_3_PRIME Traf6 DOWNSTREAM CG18262
2R	8156434	2R_8156434_SNP [dm3] 2R_12268929_SNP [dm6]	G	A	2.057e^-7	6.913e^-4	INTRON Cam
3L	14062710	3L_14062710_SNP [dm3] 3L_14069610_SNP [dm6]	G	T	2.061e^-7	6.917e^-4	INTRON CG32138
2L	11630539	2L_11630539_SNP [dm3] 2L_11630539_SNP [dm6]	C	G	2.067e^-7	6.922e^-4	INTERGENIC	TF binding site mE1_TFBS_inv
3R	26967219	3R_26967219_SNP [dm3] 3R_31141497_SNP [dm6]	T	A	2.087e^-7	6.978e^-4	INTRON Gycbeta100B
3L	17485524	3L_17485524_SNP [dm3] 3L_17492424_SNP [dm6]	C	T	2.098e^-7	7.002e^-4	INTRON Oatp74D
3L	15287209	3L_15287209_SNP [dm3] 3L_15294109_SNP [dm6]	C	T	2.103e^-7	7.006e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_jumu
3L	21775757	3L_21775757_SNP [dm3] 3L_21782657_SNP [dm6]	G	A	2.111e^-7	7.016e^-4	INTERGENIC
3L	16562689	3L_16562689_SNP [dm3] 3L_16569589_SNP [dm6]	C	G	2.113e^-7	7.016e^-4	INTRON Mipp1
3L	16649153	3L_16649153_SNP [dm3] 3L_16656053_SNP [dm6]	C	A	2.123e^-7	7.034e^-4	INTRON Baldspot
3L	14353032	3L_14353032_SNP [dm3] 3L_14359932_SNP [dm6]	A	T	2.148e^-7	7.102e^-4	INTRON fz
3L	7714996	3L_7714996_SNP [dm3] 3L_7721896_SNP [dm6]	C	A	2.151e^-7	7.102e^-4	UTR_3_PRIME CG7457 DOWNSTREAM CG12262 INTRON CG32373
2R	10700578	2R_10700578_SNP [dm3] 2R_14813073_SNP [dm6]	T	G	2.154e^-7	7.102e^-4	INTERGENIC
3L	14062589	3L_14062589_SNP [dm3] 3L_14069489_SNP [dm6]	C	T	2.164e^-7	7.115e^-4	INTRON CG32138
2L	9890286	2L_9890286_SNP [dm3] 2L_9890286_SNP [dm6]	T	C	2.166e^-7	7.115e^-4	SYNONYMOUS_CODING CG34183 UPSTREAM CG4537 DOWNSTREAM FKBP59 & 1 other	TF binding site BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	12396967	2R_12396967_SNP [dm3] 2R_16509462_SNP [dm6]	C	T	2.173e^-7	7.126e^-4	INTRON Sema-2a
2R	10790609	2R_10790609_SNP [dm3] 2R_14903104_SNP [dm6]	T	A	2.202e^-7	7.209e^-4	DOWNSTREAM Cyp317a1 INTRON CG10249
3L	17740649	3L_17740649_SNP [dm3] 3L_17747549_SNP [dm6]	A	T	2.231e^-7	7.290e^-4	UPSTREAM CG6034 INTRON Ccn
X	21379549	X_21379549_SNP [dm3] X_21508522_SNP [dm6]	A	T	2.243e^-7	7.302e^-4	INTRON CR45082
X	21379550	X_21379550_SNP [dm3] X_21508523_SNP [dm6]	A	C	2.243e^-7	7.302e^-4	INTRON CR45082
3R	10276347	3R_10276347_SNP [dm3] 3R_14450625_SNP [dm6]	C	A	2.246e^-7	7.302e^-4	INTRON cv-c
3R	26560328	3R_26560328_DEL [dm3] 3R_30734606_DEL [dm6]	GC	A	2.284e^-7	7.411e^-4	INTERGENIC
2L	6112438	2L_6112438_SNP [dm3] 2L_6112438_SNP [dm6]	G	A	2.301e^-7	7.456e^-4	INTRON stai
3L	44411	3L_44411_SNP [dm3] 3L_44411_SNP [dm6]	G	A	2.324e^-7	7.514e^-4	INTERGENIC
3R	11517188	3R_11517188_SNP [dm3] 3R_15691466_SNP [dm6]	C	T	2.329e^-7	7.514e^-4	DOWNSTREAM pxb INTERGENIC
2R	14660137	2R_14660137_SNP [dm3] 2R_18772632_SNP [dm6]	C	T	2.331e^-7	7.514e^-4	SYNONYMOUS_CODING Mctp
2L	20772048	2L_20772048_SNP [dm3] 2L_20772048_SNP [dm6]	G	A	2.338e^-7	7.518e^-4	INTRON cad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	14062871	3L_14062871_SNP [dm3] 3L_14069771_SNP [dm6]	A	G	2.341e^-7	7.518e^-4	INTRON CG32138
3L	7726931	3L_7726931_SNP [dm3] 3L_7733831_SNP [dm6]	A	T	2.361e^-7	7.571e^-4	INTRON CG32373 & 1 other
X	9236493	X_9236493_SNP [dm3] X_9342460_SNP [dm6]	A	C	2.369e^-7	7.582e^-4	INTRON CG34449
3R	26571256	3R_26571256_SNP [dm3] 3R_30745534_SNP [dm6]	T	G	2.374e^-7	7.586e^-4	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	9931768	X_9931768_SNP [dm3] X_10037735_SNP [dm6]	G	A	2.414e^-7	7.693e^-4	NON_SYNONYMOUS_CODING Cht6 INTRON Cht6
X	21379586	X_21379586_SNP [dm3] X_21508559_SNP [dm6]	A	G	2.416e^-7	7.693e^-4	INTRON CR45082
2L	19685830	2L_19685830_DEL [dm3] 2L_19685830_DEL [dm6]	CT	C	2.433e^-7	7.735e^-4	INTRON Lar
X	8104275	X_8104275_SNP [dm3] X_8210242_SNP [dm6]	G	A	2.450e^-7	7.761e^-4	INTRON sdt	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	8104394	X_8104394_SNP [dm3] X_8210361_SNP [dm6]	T	A	2.450e^-7	7.761e^-4	INTRON sdt	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
X	10470717	X_10470717_SNP [dm3] X_10576684_SNP [dm6]	C	T	2.498e^-7	7.894e^-4	INTRON spri
2L	2078458	2L_2078458_SNP [dm3] 2L_2078458_SNP [dm6]	T	A	2.500e^-7	7.894e^-4	INTRON dpr3
X	20023391	X_20023391_SNP [dm3] X_20129358_SNP [dm6]	T	A	2.531e^-7	7.979e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
X	1071459	X_1071459_SNP [dm3] X_1177426_SNP [dm6]	A	T	2.544e^-7	8.005e^-4	INTERGENIC
2L	2796971	2L_2796971_SNP [dm3] 2L_2796971_SNP [dm6]	T	C	2.552e^-7	8.019e^-4	UPSTREAM CR43821 INTRON Syt1
2R	18541342	2R_18541342_SNP [dm3] 2R_22653837_SNP [dm6]	T	A	2.557e^-7	8.021e^-4	SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
2R	14266070	2R_14266070_SNP [dm3] 2R_18378565_SNP [dm6]	C	A	2.562e^-7	8.024e^-4	DOWNSTREAM CR42736 INTERGENIC	TF binding site mE1_TFBS_cad
3L	17744251	3L_17744251_SNP [dm3] 3L_17751151_SNP [dm6]	C	T	2.568e^-7	8.027e^-4	UPSTREAM Adgf-B DOWNSTREAM Adgf-A INTERGENIC
X	5585986	X_5585986_SNP [dm3] X_5691953_SNP [dm6]	T	C	2.580e^-7	8.053e^-4	SYNONYMOUS_CODING cv UPSTREAM CR45525 DOWNSTREAM CG3149	TF binding site mE1_TFBS_sens
2L	6112459	2L_6112459_SNP [dm3] 2L_6112459_SNP [dm6]	C	G	2.601e^-7	8.105e^-4	INTRON stai
2L	2080952	2L_2080952_SNP [dm3] 2L_2080952_SNP [dm6]	G	A	2.606e^-7	8.106e^-4	SYNONYMOUS_CODING CG12674 INTRON dpr3
3L	17817876	3L_17817876_SNP [dm3] 3L_17824776_SNP [dm6]	G	A	2.621e^-7	8.126e^-4	INTRON Grd
3L	12973133	3L_12973133_SNP [dm3] 3L_12980033_SNP [dm6]	A	G	2.625e^-7	8.126e^-4	INTERGENIC
X	17926245	X_17926245_SNP [dm3] X_18032212_SNP [dm6]	C	T	2.625e^-7	8.126e^-4	INTRON Sh	TF binding site BDTNP1_TFBS_twi
2R	4400044	2R_4400044_SNP [dm3] 2R_8512539_SNP [dm6]	C	T	2.656e^-7	8.199e^-4	INTRON mtt
2R	11305955	2R_11305955_SNP [dm3] 2R_15418450_SNP [dm6]	G	T	2.658e^-7	8.199e^-4	INTRON CG43729
2R	12396975	2R_12396975_SNP [dm3] 2R_16509470_SNP [dm6]	C	G	2.700e^-7	8.314e^-4	INTRON Sema-2a
X	9301201	X_9301201_SNP [dm3] X_9407168_SNP [dm6]	T	A	2.706e^-7	8.320e^-4	INTRON mgl
3R	25119302	3R_25119302_INS [dm3] 3R_29293580_INS [dm6]	A	ACA	2.712e^-7	8.326e^-4	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	11330305	2R_11330305_SNP [dm3] 2R_15442800_SNP [dm6]	T	C	2.734e^-7	8.381e^-4	INTRON CG43729
3L	13227928	3L_13227928_SNP [dm3] 3L_13234828_SNP [dm6]	T	C	2.752e^-7	8.420e^-4	INTRON caps
2R	10790667	2R_10790667_SNP [dm3] 2R_14903162_SNP [dm6]	G	A	2.760e^-7	8.422e^-4	SYNONYMOUS_CODING CG10249 DOWNSTREAM Cyp317a1
2L	11630338	2L_11630338_SNP [dm3] 2L_11630338_SNP [dm6]	T	A	2.761e^-7	8.422e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3R	25909513	3R_25909513_SNP [dm3] 3R_30083791_SNP [dm6]	G	T	2.780e^-7	8.465e^-4	INTRON sima
3R	25909570	3R_25909570_SNP [dm3] 3R_30083848_SNP [dm6]	C	G	2.796e^-7	8.499e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25909567	3R_25909567_SNP [dm3] 3R_30083845_SNP [dm6]	A	C	2.802e^-7	8.505e^-4	INTRON sima	TF binding site mE1_TFBS_Trl
3R	26093541	3R_26093541_SNP [dm3] 3R_30267819_SNP [dm6]	C	T	2.816e^-7	8.534e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	19417259	3L_19417259_SNP [dm3] 3L_19424159_SNP [dm6]	A	G	2.860e^-7	8.653e^-4	UPSTREAM CR42838 DOWNSTREAM CG33255 EXON CR32205
3L	18919462	3L_18919462_SNP [dm3] 3L_18926362_SNP [dm6]	G	A	2.918e^-7	8.809e^-4	DOWNSTREAM CG43049 INTRON CG32204
X	4925526	X_4925526_SNP [dm3] X_5031493_SNP [dm6]	A	T	2.921e^-7	8.809e^-4	INTRON CR44833
X	10382694	X_10382694_SNP [dm3] X_10488661_SNP [dm6]	G	T	2.927e^-7	8.809e^-4	INTERGENIC
2L	16021452	2L_16021452_SNP [dm3] 2L_16021452_SNP [dm6]	T	A	2.935e^-7	8.809e^-4	INTRON beat-Ic
3R	25119308	3R_25119308_SNP [dm3] 3R_29293586_SNP [dm6]	C	T	2.935e^-7	8.809e^-4	DOWNSTREAM CG14506 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
3L	18308278	3L_18308278_SNP [dm3] 3L_18315178_SNP [dm6]	G	C	2.941e^-7	8.813e^-4	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	25423944	3R_25423944_SNP [dm3] 3R_29598222_SNP [dm6]	A	C	2.964e^-7	8.868e^-4	UTR_3_PRIME alph DOWNSTREAM CG7568 INTRON alph
2R	19534651	2R_19534651_SNP [dm3] 2R_23647128_SNP [dm6]	T	G	2.971e^-7	8.871e^-4	INTRON retn	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA
2R	5301495	2R_5301495_SNP [dm3] 2R_9413990_SNP [dm6]	T	G	2.975e^-7	8.871e^-4	UPSTREAM wun2 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	2048994	3L_2048994_SNP [dm3] 3L_2048994_SNP [dm6]	C	T	3.000e^-7	8.933e^-4	NON_SYNONYMOUS_CODING sls	TF binding site mE1_TFBS_sens
3R	13177649	3R_13177649_SNP [dm3] 3R_17351927_SNP [dm6]	G	A	3.127e^-7	9.294e^-4	INTRON beat-IIa
2R	8242836	2R_8242836_SNP [dm3] 2R_12355331_SNP [dm6]	C	T	3.146e^-7	9.338e^-4	UTR_3_PRIME CG30047 UPSTREAM CG30049
3L	1712790	3L_1712790_SNP [dm3] 3L_1712790_SNP [dm6]	A	T	3.174e^-7	9.404e^-4	SPLICE_SITE_REGION CG7991 INTRON CG7991	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3R	25689827	3R_25689827_SNP [dm3] 3R_29864105_SNP [dm6]	G	A	3.193e^-7	9.448e^-4	SYNONYMOUS_CODING Zip99C DOWNSTREAM snoRNA:Me28S-A2564 & 1 other
2L	13057901	2L_13057901_SNP [dm3] 2L_13057901_SNP [dm6]	C	A	3.207e^-7	9.472e^-4	INTRON CG9932
3L	16580561	3L_16580561_SNP [dm3] 3L_16587461_SNP [dm6]	C	T	3.227e^-7	9.516e^-4	SYNONYMOUS_CODING CG32163 UPSTREAM Syx8 INTRON CG32163	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2L	1886316	2L_1886316_SNP [dm3] 2L_1886316_SNP [dm6]	A	T	3.249e^-7	9.560e^-4	INTRON CG7337	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	10623444	3R_10623444_SNP [dm3] 3R_14797722_SNP [dm6]	T	G	3.253e^-7	9.560e^-4	INTRON CG14855
3R	14455053	3R_14455053_SNP [dm3] 3R_18629331_SNP [dm6]	A	G	3.257e^-7	9.560e^-4	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
X	17410889	X_17410889_SNP [dm3] X_17516856_SNP [dm6]	C	T	3.263e^-7	9.562e^-4	INTRON CG43658
3R	3819254	3R_3819254_SNP [dm3] 3R_7993532_SNP [dm6]	C	T	3.283e^-7	9.606e^-4	INTRON CG2781
2L	10045149	2L_10045149_SNP [dm3] 2L_10045149_SNP [dm6]	T	C	3.295e^-7	9.618e^-4	INTERGENIC
3R	25558924	3R_25558924_SNP [dm3] 3R_29733202_SNP [dm6]	G	T	3.297e^-7	9.618e^-4	UTR_3_PRIME Kul
3L	7728041	3L_7728041_SNP [dm3] 3L_7734941_SNP [dm6]	T	A	3.325e^-7	9.667e^-4	INTRON CG32373 & 1 other
3R	25558860	3R_25558860_SNP [dm3] 3R_29733138_SNP [dm6]	G	A	3.327e^-7	9.667e^-4	UTR_3_PRIME Kul
3L	7708996	3L_7708996_SNP [dm3] 3L_7715896_SNP [dm6]	G	A	3.330e^-7	9.667e^-4	INTRON CG32373 & 1 other
3R	1283518	3R_1283518_SNP [dm3] 3R_5457796_SNP [dm6]	C	A	3.363e^-7	9.748e^-4	UTR_3_PRIME CG14669 DOWNSTREAM PEK & 1 other
2L	11032468	2L_11032468_SNP [dm3] 2L_11032468_SNP [dm6]	C	A	3.386e^-7	9.800e^-4	INTRON Samuel
3L	10444479	3L_10444479_SNP [dm3] 3L_10451379_SNP [dm6]	A	T	3.421e^-7	9.878e^-4	INTERGENIC
3L	20516873	3L_20516873_SNP [dm3] 3L_20523773_SNP [dm6]	G	A	3.424e^-7	9.878e^-4	SYNONYMOUS_CODING CG4825
3L	15050938	3L_15050938_SNP [dm3] 3L_15057838_SNP [dm6]	G	A	3.428e^-7	9.878e^-4	INTRON Sytbeta
3R	23773908	3R_23773908_SNP [dm3] 3R_27948186_SNP [dm6]	T	A	3.490e^-7	0.001	UPSTREAM Gp93 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	4064343	3R_4064343_SNP [dm3] 3R_8238621_SNP [dm6]	A	G	3.492e^-7	0.001	INTRON Ada2b	TF binding site mE1_TFBS_cad
2L	8063702	2L_8063702_SNP [dm3] 2L_8063702_SNP [dm6]	C	T	3.506e^-7	0.001	SYNONYMOUS_CODING poe	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	7718288	3L_7718288_SNP [dm3] 3L_7725188_SNP [dm6]	G	A	3.528e^-7	0.001	SYNONYMOUS_CODING CG7457 INTRON CG32373	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	11980400	3R_11980400_SNP [dm3] 3R_16154678_SNP [dm6]	T	A	3.531e^-7	0.001	UPSTREAM CG6006 INTERGENIC
2L	13057951	2L_13057951_SNP [dm3] 2L_13057951_SNP [dm6]	A	G	3.556e^-7	0.001	INTRON CG9932
3L	4070316	3L_4070316_SNP [dm3] 3L_4070316_SNP [dm6]	G	C	3.565e^-7	0.001	DOWNSTREAM CG32259 INTRON wit
3L	14154561	3L_14154561_SNP [dm3] 3L_14161461_SNP [dm6]	C	T	3.574e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs
2R	19546452	2R_19546452_SNP [dm3] 2R_23658929_SNP [dm6]	A	C	3.594e^-7	0.001	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_Trl
3L	5078051	3L_5078051_SNP [dm3] 3L_5078051_SNP [dm6]	A	T	3.604e^-7	0.001	INTRON Con
3R	27021304	3R_27021304_SNP [dm3] 3R_31195582_SNP [dm6]	G	A	3.625e^-7	0.001	UPSTREAM mesh INTRON mesh	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
3L	20540759	3L_20540759_DEL [dm3] 3L_20547659_DEL [dm6]	CG	T	3.625e^-7	0.001	INTERGENIC
2R	8187261	2R_8187261_SNP [dm3] 2R_12299756_SNP [dm6]	G	A	3.641e^-7	0.001	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3L	3922734	3L_3922734_SNP [dm3] 3L_3922734_SNP [dm6]	C	G	3.642e^-7	0.001	INTRON Eip63F-1
X	6720459	X_6720459_SNP [dm3] X_6826426_SNP [dm6]	G	T	3.644e^-7	0.001	SYNONYMOUS_CODING nonC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	18536134	2R_18536134_SNP [dm3] 2R_22648629_SNP [dm6]	T	A	3.645e^-7	0.001	UPSTREAM CG34446 & 1 other DOWNSTREAM CG3746 INTERGENIC
3L	16888117	3L_16888117_DEL [dm3] 3L_16895017_DEL [dm6]	CTGATAAATATTATAAAGAT...	C	3.671e^-7	0.001	INTRON Lmpt
2L	2079439	2L_2079439_SNP [dm3] 2L_2079439_SNP [dm6]	G	A	3.705e^-7	0.001	UPSTREAM CG12674 INTRON dpr3
3R	6843671	3R_6843671_SNP [dm3] 3R_11017949_SNP [dm6]	A	G	3.770e^-7	0.001	INTRON CG34114
X	5572600	X_5572600_SNP [dm3] X_5678567_SNP [dm6]	C	T	3.785e^-7	0.001	INTRON Tre1	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn
3R	25329581	3R_25329581_SNP [dm3] 3R_29503859_SNP [dm6]	T	C	3.786e^-7	0.001	UPSTREAM Trc8 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA
3L	10463002	3L_10463002_SNP [dm3] 3L_10469902_SNP [dm6]	A	C	3.825e^-7	0.001	DOWNSTREAM S-Lap3 INTERGENIC
3R	4067888	3R_4067888_SNP [dm3] 3R_8242166_SNP [dm6]	C	T	3.848e^-7	0.001	UTR_3_PRIME CG9636
3L	5033252	3L_5033252_SNP [dm3] 3L_5033252_SNP [dm6]	G	C	3.865e^-7	0.001	INTRON Con	TF binding site mE1_TFBS_inv
3R	26159255	3R_26159255_SNP [dm3] 3R_30333533_SNP [dm6]	C	G	3.922e^-7	0.001	INTRON hdc
X	10862459	X_10862459_SNP [dm3] X_10968426_SNP [dm6]	A	T	3.930e^-7	0.001	UTR_3_PRIME CG42339
X	10862461	X_10862461_INS [dm3] X_10968428_INS [dm6]	C	CATTCCT	3.930e^-7	0.001	UTR_3_PRIME CG42339
3L	12655767	3L_12655767_SNP [dm3] 3L_12662667_SNP [dm6]	A	C	3.931e^-7	0.001	DOWNSTREAM CR44552 INTERGENIC
2R	14945513	2R_14945513_SNP [dm3] 2R_19058008_SNP [dm6]	C	T	3.934e^-7	0.001	INTERGENIC
X	10957224	X_10957224_SNP [dm3] X_11063191_SNP [dm6]	G	A	3.965e^-7	0.001	UPSTREAM CG1537 INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	13298888	3R_13298888_SNP [dm3] 3R_17473166_SNP [dm6]	G	T	3.965e^-7	0.001	DOWNSTREAM Dscam3 INTERGENIC
X	9300527	X_9300527_SNP [dm3] X_9406494_SNP [dm6]	C	A	3.986e^-7	0.001	INTRON mgl
3R	14361680	3R_14361680_SNP [dm3] 3R_18535958_SNP [dm6]	A	T	4.019e^-7	0.001	INTRON fru
3L	11424471	3L_11424471_SNP [dm3] 3L_11431371_SNP [dm6]	G	C	4.020e^-7	0.001	INTERGENIC
3L	10127592	3L_10127592_SNP [dm3] 3L_10134492_SNP [dm6]	G	T	4.028e^-7	0.001	INTRON dpr6
X	4925372	X_4925372_SNP [dm3] X_5031339_SNP [dm6]	T	C	4.062e^-7	0.001	INTRON CR44833
3R	26096374	3R_26096374_SNP [dm3] 3R_30270652_SNP [dm6]	A	T	4.096e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Trl
3R	10626529	3R_10626529_SNP [dm3] 3R_14800807_SNP [dm6]	G	A	4.128e^-7	0.001	SYNONYMOUS_CODING CG14856 UPSTREAM CG14857
3R	6829366	3R_6829366_SNP [dm3] 3R_11003644_SNP [dm6]	C	A	4.139e^-7	0.001	INTRON CG34114
X	4924836	X_4924836_SNP [dm3] X_5030803_SNP [dm6]	C	G	4.139e^-7	0.001	INTRON CR44833
3R	6289952	3R_6289952_SNP [dm3] 3R_10464230_SNP [dm6]	G	A	4.170e^-7	0.001	EXON CR44955
2L	12729244	2L_12729244_SNP [dm3] 2L_12729244_SNP [dm6]	G	T	4.196e^-7	0.001	NON_SYNONYMOUS_CODING MRP INTRON MRP
2R	11327701	2R_11327701_SNP [dm3] 2R_15440196_SNP [dm6]	T	C	4.209e^-7	0.001	INTRON CG43729
X	15693535	X_15693535_SNP [dm3] X_15799502_SNP [dm6]	C	A	4.213e^-7	0.001	UTR_5_PRIME CG15602 UPSTREAM CG15602 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Ubx
2L	16150211	2L_16150211_SNP [dm3] 2L_16150211_SNP [dm6]	C	T	4.235e^-7	0.001	INTERGENIC
X	10382702	X_10382702_SNP [dm3] X_10488669_SNP [dm6]	A	C	4.295e^-7	0.001	INTERGENIC
2R	7419025	2R_7419025_SNP [dm3] 2R_11531520_SNP [dm6]	T	C	4.362e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_hkb
2R	19546113	2R_19546113_SNP [dm3] 2R_23658590_SNP [dm6]	A	G	4.367e^-7	0.001	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
2R	19547846	2R_19547846_SNP [dm3] 2R_23660323_SNP [dm6]	C	T	4.367e^-7	0.001	UPSTREAM Pde8 INTRON Pde8	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2R	17670767	2R_17670767_SNP [dm3] 2R_21783262_SNP [dm6]	G	A	4.435e^-7	0.001	INTERGENIC
3R	17741951	3R_17741951_SNP [dm3] 3R_21916229_SNP [dm6]	T	C	4.455e^-7	0.001	DOWNSTREAM CG17843 INTERGENIC
3L	11368565	3L_11368565_SNP [dm3] 3L_11375465_SNP [dm6]	C	T	4.508e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	19433770	X_19433770_SNP [dm3] X_19539737_SNP [dm6]	C	T	4.543e^-7	0.001	INTRON CG32532	TF binding site mE1_TFBS_chinmo
3L	12803667	3L_12803667_SNP [dm3] 3L_12810567_SNP [dm6]	C	G	4.560e^-7	0.001	SYNONYMOUS_CODING Sap130 DOWNSTREAM CG32110	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	13660305	3L_13660305_SNP [dm3] 3L_13667205_SNP [dm6]	T	A	4.601e^-7	0.001	UPSTREAM bru-3 INTRON bru-3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	16771744	3R_16771744_DEL [dm3] 3R_20946022_DEL [dm6]	TG	C	4.601e^-7	0.001	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
3R	16771747	3R_16771747_SNP [dm3] 3R_20946025_SNP [dm6]	T	C	4.601e^-7	0.001	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2R	12808661	2R_12808661_SNP [dm3] 2R_16921156_SNP [dm6]	T	G	4.606e^-7	0.001	INTERGENIC
3L	18895610	3L_18895610_SNP [dm3] 3L_18902510_SNP [dm6]	G	A	4.696e^-7	0.001	SYNONYMOUS_CODING CG6843 UPSTREAM arx DOWNSTREAM CSN1b	TF binding site mE1_TFBS_sens
2R	9895901	2R_9895901_SNP [dm3] 2R_14008396_SNP [dm6]	T	C	4.747e^-7	0.001	UPSTREAM mam INTRON mam	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	17787395	3L_17787395_SNP [dm3] 3L_17794295_SNP [dm6]	C	T	4.757e^-7	0.001	NON_SYNONYMOUS_CODING CG42816
X	15690366	X_15690366_SNP [dm3] X_15796333_SNP [dm6]	G	C	4.770e^-7	0.001	UPSTREAM CR44383 & 1 other DOWNSTREAM CG32581 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_kn mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_Ubx mE1_TFBS_zfh1
3R	7529855	3R_7529855_SNP [dm3] 3R_11704133_SNP [dm6]	A	G	4.808e^-7	0.001	NON_SYNONYMOUS_CODING I-t
3R	25909242	3R_25909242_SNP [dm3] 3R_30083520_SNP [dm6]	A	T	4.840e^-7	0.001	INTRON sima
3L	15634444	3L_15634444_SNP [dm3] 3L_15641344_SNP [dm6]	T	G	4.882e^-7	0.001	INTRON comm3
2L	20505516	2L_20505516_DEL [dm3] 2L_20505516_DEL [dm6]	CAAAAAC	GG	4.886e^-7	0.001	INTERGENIC
2L	20505530	2L_20505530_MNP [dm3] 2L_20505530_MNP [dm6]	AAA	CTT	4.886e^-7	0.001	INTERGENIC
2L	20505537	2L_20505537_SNP [dm3] 2L_20505537_SNP [dm6]	G	A	4.886e^-7	0.001	INTERGENIC
2R	8350724	2R_8350724_SNP [dm3] 2R_12463219_SNP [dm6]	C	T	4.889e^-7	0.001	INTRON Lac
3L	9024391	3L_9024391_SNP [dm3] 3L_9031291_SNP [dm6]	C	T	4.916e^-7	0.001	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2R	19491125	2R_19491125_DEL [dm3] 2R_23603602_DEL [dm6]	TTTGATCAAGTGTAT...	T	4.983e^-7	0.001	UTR_3_PRIME CG5398 DOWNSTREAM CG17664
X	18661147	X_18661147_SNP [dm3] X_18767114_SNP [dm6]	C	T	4.988e^-7	0.001	INTRON CCKLR-17D3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3L	4739050	3L_4739050_SNP [dm3] 3L_4739050_SNP [dm6]	T	C	5.032e^-7	0.001	INTRON RhoGEF64C
3R	25550116	3R_25550116_SNP [dm3] 3R_29724394_SNP [dm6]	T	G	5.042e^-7	0.001	SYNONYMOUS_CODING CG7593 UPSTREAM CG18731 DOWNSTREAM Pcd	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
3R	27097438	3R_27097438_SNP [dm3] 3R_31271716_SNP [dm6]	T	G	5.078e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	12361267	3R_12361267_SNP [dm3] 3R_16535545_SNP [dm6]	A	T	5.084e^-7	0.001	INTRON CG42342
X	5586202	X_5586202_SNP [dm3] X_5692169_SNP [dm6]	C	A	5.102e^-7	0.001	SYNONYMOUS_CODING cv UPSTREAM CR45525 DOWNSTREAM CG3149	TF binding site mE1_TFBS_sens
2R	14667088	2R_14667088_SNP [dm3] 2R_18779583_SNP [dm6]	T	G	5.111e^-7	0.001	INTERGENIC
X	21380822	X_21380822_SNP [dm3] X_21509795_SNP [dm6]	T	C	5.179e^-7	0.001	INTRON CR45082
3R	7184156	3R_7184156_DEL [dm3] 3R_11358434_DEL [dm6]	TA	G	5.189e^-7	0.001	INTRON pros
X	17356209	X_17356209_SNP [dm3] X_17462176_SNP [dm6]	C	T	5.200e^-7	0.001	INTRON CG43658
3R	5008187	3R_5008187_SNP [dm3] 3R_9182465_SNP [dm6]	G	A	5.233e^-7	0.001	INTRON pum
2L	20505535	2L_20505535_SNP [dm3] 2L_20505535_SNP [dm6]	C	T	5.264e^-7	0.001	INTERGENIC
2R	15362339	2R_15362339_DEL [dm3] 2R_19474834_DEL [dm6]	GAATCATT	C	5.286e^-7	0.001	INTRON par-1
3L	16142352	3L_16142352_SNP [dm3] 3L_16149252_SNP [dm6]	C	T	5.313e^-7	0.001	INTRON CG5151	TF binding site BDTNP1_TFBS_dl
X	19611469	X_19611469_SNP [dm3] X_19717436_SNP [dm6]	G	A	5.356e^-7	0.001	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_disco
3R	13045844	3R_13045844_SNP [dm3] 3R_17220122_SNP [dm6]	T	C	5.357e^-7	0.001	UPSTREAM CG31262 INTRON CG31262
X	4923556	X_4923556_SNP [dm3] X_5029523_SNP [dm6]	T	C	5.362e^-7	0.001	INTRON CR44833
2L	20504594	2L_20504594_SNP [dm3] 2L_20504594_SNP [dm6]	G	C	5.400e^-7	0.001	INTERGENIC
3L	1282317	3L_1282317_SNP [dm3] 3L_1282317_SNP [dm6]	C	T	5.405e^-7	0.001	INTRON CG32333
2R	7941262	2R_7941262_SNP [dm3] 2R_12053757_SNP [dm6]	C	T	5.407e^-7	0.001	UTR_3_PRIME CG44314 INTRON CG44314	TF binding site mE1_TFBS_cad
3R	10331019	3R_10331019_SNP [dm3] 3R_14505297_SNP [dm6]	A	T	5.414e^-7	0.001	INTRON CR44177	TF binding site mE1_TFBS_cad
3L	14293243	3L_14293243_SNP [dm3] 3L_14300143_SNP [dm6]	G	C	5.495e^-7	0.001	INTRON fz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	14455026	3R_14455026_SNP [dm3] 3R_18629304_SNP [dm6]	T	C	5.538e^-7	0.001	UTR_3_PRIME CG14301 UPSTREAM tRNA:CR31228 INTRON qin
2R	8187258	2R_8187258_SNP [dm3] 2R_12299753_SNP [dm6]	T	C	5.560e^-7	0.001	SYNONYMOUS_CODING CG8850 UTR_3_PRIME CG42700 DOWNSTREAM CG42700
3L	10461769	3L_10461769_SNP [dm3] 3L_10468669_SNP [dm6]	C	T	5.566e^-7	0.001	UTR_3_PRIME S-Lap3 DOWNSTREAM S-Lap3
3R	12086684	3R_12086684_SNP [dm3] 3R_16260962_SNP [dm6]	G	T	5.567e^-7	0.001	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
X	3440966	X_3440966_SNP [dm3] X_3546933_SNP [dm6]	G	A	5.570e^-7	0.001	UPSTREAM CR34335 INTRON CG32791	TF binding site mE1_TFBS_Trl
X	11996002	X_11996002_SNP [dm3] X_12101969_SNP [dm6]	T	G	5.570e^-7	0.001	DOWNSTREAM CG11356 INTRON CR43960 & 1 other
2R	16076213	2R_16076213_SNP [dm3] 2R_20188708_SNP [dm6]	A	G	5.588e^-7	0.001	INTERGENIC
3R	12396091	3R_12396091_SNP [dm3] 3R_16570369_SNP [dm6]	C	T	5.617e^-7	0.001	SYNONYMOUS_CODING CG42342 INTRON CG42342	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	10446569	X_10446569_SNP [dm3] X_10552536_SNP [dm6]	G	C	5.617e^-7	0.001	INTRON spri
3L	5703312	3L_5703312_SNP [dm3] 3L_5710212_SNP [dm6]	T	A	5.684e^-7	0.001	INTRON sif
3L	1326155	3L_1326155_SNP [dm3] 3L_1326155_SNP [dm6]	T	C	5.693e^-7	0.001	INTRON Myo61F	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16089128	3L_16089128_SNP [dm3] 3L_16096028_SNP [dm6]	G	T	5.719e^-7	0.001	DOWNSTREAM ClC-c INTRON CG13074 & 1 other	TF binding site mE1_TFBS_cad
3L	16089817	3L_16089817_SNP [dm3] 3L_16096717_SNP [dm6]	T	A	5.719e^-7	0.001	NON_SYNONYMOUS_CODING CG13074 DOWNSTREAM ClC-c	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16091581	3L_16091581_SNP [dm3] 3L_16098481_SNP [dm6]	C	T	5.719e^-7	0.001	UPSTREAM CG13074 INTRON ms_3_72Dt	TF binding site mE1_TFBS_cad
3L	15677772	3L_15677772_SNP [dm3] 3L_15684672_SNP [dm6]	G	C	5.730e^-7	0.001	INTRON pgant8
3R	7185139	3R_7185139_SNP [dm3] 3R_11359417_SNP [dm6]	C	G	5.791e^-7	0.001	INTRON pros
3R	5008610	3R_5008610_SNP [dm3] 3R_9182888_SNP [dm6]	C	A	5.803e^-7	0.001	INTRON pum
2L	20505528	2L_20505528_SNP [dm3] 2L_20505528_SNP [dm6]	C	A	5.817e^-7	0.001	INTERGENIC
2R	18533842	2R_18533842_SNP [dm3] 2R_22646337_SNP [dm6]	C	T	5.851e^-7	0.001	UTR_5_PRIME CG2852 DOWNSTREAM CG30195	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_HSA
2L	11630536	2L_11630536_SNP [dm3] 2L_11630536_SNP [dm6]	T	C	5.858e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2L	1269544	2L_1269544_SNP [dm3] 2L_1269544_SNP [dm6]	G	T	5.922e^-7	0.001	INTRON robo3
2R	8717895	2R_8717895_SNP [dm3] 2R_12830390_SNP [dm6]	A	T	5.926e^-7	0.001	INTERGENIC
2L	11630568	2L_11630568_SNP [dm3] 2L_11630568_SNP [dm6]	A	G	5.944e^-7	0.001	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2079555	2L_2079555_SNP [dm3] 2L_2079555_SNP [dm6]	T	G	6.021e^-7	0.001	UPSTREAM CG12674 INTRON dpr3
3L	3614239	3L_3614239_SNP [dm3] 3L_3614239_SNP [dm6]	T	C	6.037e^-7	0.001	SYNONYMOUS_CODING CG10359
3R	25056819	3R_25056819_SNP [dm3] 3R_29231097_SNP [dm6]	G	A	6.059e^-7	0.001	SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad
3L	968621	3L_968621_SNP [dm3] 3L_968621_SNP [dm6]	C	T	6.071e^-7	0.001	INTRON Glut1
3R	5704304	3R_5704304_SNP [dm3] 3R_9878582_SNP [dm6]	G	A	6.133e^-7	0.001	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	10306756	X_10306756_SNP [dm3] X_10412723_SNP [dm6]	G	A	6.149e^-7	0.001	UTR_3_PRIME CG32683
3L	19418740	3L_19418740_SNP [dm3] 3L_19425640_SNP [dm6]	A	G	6.197e^-7	0.002	DOWNSTREAM CR42838 INTERGENIC
2R	8717884	2R_8717884_SNP [dm3] 2R_12830379_SNP [dm6]	C	T	6.227e^-7	0.002	INTERGENIC
2R	19548250	2R_19548250_SNP [dm3] 2R_23660727_SNP [dm6]	T	C	6.250e^-7	0.002	INTRON Pde8	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	16548909	3L_16548909_SNP [dm3] 3L_16555809_SNP [dm6]	T	A	6.267e^-7	0.002	INTERGENIC
3R	26751873	3R_26751873_SNP [dm3] 3R_30926151_SNP [dm6]	C	T	6.289e^-7	0.002	INTRON Ptx1	TF binding site BDTNP1_TFBS_twi
X	16987938	X_16987938_SNP [dm3] X_17093905_SNP [dm6]	T	G	6.290e^-7	0.002	INTRON CG16700 & 1 other
2L	8360270	2L_8360270_SNP [dm3] 2L_8360270_SNP [dm6]	G	A	6.297e^-7	0.002	SYNONYMOUS_CODING CG7627	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	5895266	3R_5895266_SNP [dm3] 3R_10069544_SNP [dm6]	C	T	6.298e^-7	0.002	DOWNSTREAM CG33784 INTERGENIC
3R	17975269	3R_17975269_SNP [dm3] 3R_22149547_SNP [dm6]	G	C	6.316e^-7	0.002	INTRON SKIP
X	13140901	X_13140901_SNP [dm3] X_13246868_SNP [dm6]	T	G	6.360e^-7	0.002	INTRON mew	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_inv
X	10053953	X_10053953_SNP [dm3] X_10159920_SNP [dm6]	G	A	6.385e^-7	0.002	INTRON CR44894 & 1 other
2R	13115433	2R_13115433_SNP [dm3] 2R_17227928_SNP [dm6]	A	G	6.390e^-7	0.002	INTRON mbl
3R	25909568	3R_25909568_SNP [dm3] 3R_30083846_SNP [dm6]	T	A	6.402e^-7	0.002	INTRON sima	TF binding site mE1_TFBS_Trl
3L	14105306	3L_14105306_SNP [dm3] 3L_14112206_SNP [dm6]	A	T	6.424e^-7	0.002	DOWNSTREAM Sox21b INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	14667084	2R_14667084_SNP [dm3] 2R_18779579_SNP [dm6]	T	A	6.455e^-7	0.002	INTERGENIC
3L	1935177	3L_1935177_SNP [dm3] 3L_1935177_SNP [dm6]	A	T	6.459e^-7	0.002	INTRON CG5687
2R	16158532	2R_16158532_SNP [dm3] 2R_20271027_SNP [dm6]	T	C	6.474e^-7	0.002	DOWNSTREAM CG10444 & 1 other INTERGENIC
3L	20855879	3L_20855879_SNP [dm3] 3L_20862779_SNP [dm6]	A	G	6.527e^-7	0.002	INTRON CG32432
X	8054853	X_8054853_SNP [dm3] X_8160820_SNP [dm6]	G	C	6.533e^-7	0.002	SYNONYMOUS_CODING CG15337 DOWNSTREAM CG10761	TF binding site mE1_TFBS_chinmo
3L	16104756	3L_16104756_SNP [dm3] 3L_16111656_SNP [dm6]	C	T	6.543e^-7	0.002	NON_SYNONYMOUS_CODING Zn72D	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	15167364	3L_15167364_SNP [dm3] 3L_15174264_SNP [dm6]	T	G	6.557e^-7	0.002	INTERGENIC
3R	3477532	3R_3477532_DEL [dm3] 3R_7651810_DEL [dm6]	TCGT	T	6.575e^-7	0.002	INTERGENIC
X	14441430	X_14441430_SNP [dm3] X_14547397_SNP [dm6]	A	T	6.587e^-7	0.002	INTERGENIC
3R	25909563	3R_25909563_SNP [dm3] 3R_30083841_SNP [dm6]	C	A	6.647e^-7	0.002	INTRON sima	TF binding site mE1_TFBS_Trl
3R	25603087	3R_25603087_SNP [dm3] 3R_29777365_SNP [dm6]	G	T	6.649e^-7	0.002	INTRON kay	TF binding site BDTNP1_TFBS_z
3L	5593878	3L_5593878_SNP [dm3] 3L_5600778_SNP [dm6]	C	G	6.681e^-7	0.002	DOWNSTREAM CG10590 INTERGENIC
2R	10840300	2R_10840300_SNP [dm3] 2R_14952795_SNP [dm6]	T	G	6.711e^-7	0.002	INTRON aPKC
3L	16138901	3L_16138901_SNP [dm3] 3L_16145801_SNP [dm6]	G	T	6.741e^-7	0.002	INTRON CG5151
3R	27012770	3R_27012770_SNP [dm3] 3R_31187048_SNP [dm6]	A	T	6.751e^-7	0.002	INTRON mesh
3R	5704322	3R_5704322_SNP [dm3] 3R_9878600_SNP [dm6]	C	T	6.762e^-7	0.002	UPSTREAM CR45029 INTRON Glut4EF	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14662486	2R_14662486_SNP [dm3] 2R_18774981_SNP [dm6]	T	G	6.763e^-7	0.002	UPSTREAM CR43964 DOWNSTREAM Mctp & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3R	10433683	3R_10433683_SNP [dm3] 3R_14607961_SNP [dm6]	C	G	6.813e^-7	0.002	UTR_3_PRIME stumps
2R	2866109	2R_2866109_SNP [dm3] 2R_6978604_SNP [dm6]	A	G	6.816e^-7	0.002	SPLICE_SITE_REGION vimar UPSTREAM CR44170 INTRON vimar
X	10112207	X_10112207_SNP [dm3] X_10218174_SNP [dm6]	C	G	6.832e^-7	0.002	SYNONYMOUS_CODING CG15308 DOWNSTREAM l_1_G0230 EXON CR45629
2R	18532757	2R_18532757_SNP [dm3] 2R_22645252_SNP [dm6]	C	T	6.845e^-7	0.002	SYNONYMOUS_CODING CG2852	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 mE1_TFBS_HSA mE1_TFBS_sens
3R	10422390	3R_10422390_SNP [dm3] 3R_14596668_SNP [dm6]	G	C	6.878e^-7	0.002	UPSTREAM stumps INTRON stumps	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	18800404	X_18800404_SNP [dm3] X_18906371_SNP [dm6]	A	G	6.879e^-7	0.002	INTRON CG7378
X	8829226	X_8829226_SNP [dm3] X_8935193_SNP [dm6]	T	C	6.918e^-7	0.002	INTRON rdgA
X	9292705	X_9292705_SNP [dm3] X_9398672_SNP [dm6]	C	T	6.928e^-7	0.002	INTRON mgl	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25750826	3R_25750826_SNP [dm3] 3R_29925104_SNP [dm6]	G	A	6.937e^-7	0.002	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
X	12694507	X_12694507_DEL [dm3] X_12800474_DEL [dm6]	CTC	C	6.944e^-7	0.002	INTRON Pde9
2L	19685829	2L_19685829_SNP [dm3] 2L_19685829_SNP [dm6]	T	C	6.964e^-7	0.002	INTRON Lar
2L	2632366	2L_2632366_SNP [dm3] 2L_2632366_SNP [dm6]	A	G	7.034e^-7	0.002	INTERGENIC
X	12287154	X_12287154_SNP [dm3] X_12393121_SNP [dm6]	G	A	7.064e^-7	0.002	INTERGENIC
2L	1326980	2L_1326980_SNP [dm3] 2L_1326980_SNP [dm6]	A	G	7.088e^-7	0.002	INTERGENIC
2L	1326984	2L_1326984_SNP [dm3] 2L_1326984_SNP [dm6]	T	C	7.088e^-7	0.002	INTERGENIC
3R	26828519	3R_26828519_SNP [dm3] 3R_31002797_SNP [dm6]	G	A	7.123e^-7	0.002	INTRON 5-HT7
3R	5145024	3R_5145024_SNP [dm3] 3R_9319302_SNP [dm6]	G	A	7.150e^-7	0.002	INTRON CG8861
2R	12678191	2R_12678191_SNP [dm3] 2R_16790686_SNP [dm6]	A	G	7.156e^-7	0.002	INTRON CG5522	TF binding site mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens
2R	15376989	2R_15376989_SNP [dm3] 2R_19489484_SNP [dm6]	G	A	7.162e^-7	0.002	SYNONYMOUS_CODING Oseg6
2R	15205326	2R_15205326_SNP [dm3] 2R_19317821_SNP [dm6]	C	T	7.182e^-7	0.002	INTRON Rgk1
2R	8185873	2R_8185873_INS [dm3] 2R_12298368_INS [dm6]	C	CC	7.265e^-7	0.002	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850 & 1 other
X	12626052	X_12626052_SNP [dm3] X_12732019_SNP [dm6]	A	T	7.290e^-7	0.002	UTR_5_PRIME Smr INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	8180503	X_8180503_SNP [dm3] X_8286470_SNP [dm6]	T	C	7.340e^-7	0.002	SPLICE_SITE_REGION nAChRalpha3 INTRON nAChRalpha3
3L	7706071	3L_7706071_INS [dm3] 3L_7712971_INS [dm6]	C	CC	7.351e^-7	0.002	INTRON CG32373 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3R	7187552	3R_7187552_SNP [dm3] 3R_11361830_SNP [dm6]	C	A	7.358e^-7	0.002	INTRON pros	regulatory region REDfly_CRMs TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2L	15951039	2L_15951039_SNP [dm3] 2L_15951039_SNP [dm6]	T	A	7.376e^-7	0.002	INTRON beat-Ib
2R	8222839	2R_8222839_SNP [dm3] 2R_12335334_SNP [dm6]	G	T	7.505e^-7	0.002	UTR_5_PRIME CG8490 UPSTREAM tRNA:CR30251	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_h mE1_TFBS_HSA
3R	26571290	3R_26571290_SNP [dm3] 3R_30745568_SNP [dm6]	T	C	7.567e^-7	0.002	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	21959900	3R_21959900_SNP [dm3] 3R_26134178_SNP [dm6]	G	A	7.572e^-7	0.002	INTRON CG6142
2R	12317565	2R_12317565_SNP [dm3] 2R_16430060_SNP [dm6]	C	G	7.592e^-7	0.002	UTR_3_PRIME Sema-2b
3R	26581010	3R_26581010_SNP [dm3] 3R_30755288_SNP [dm6]	G	A	7.664e^-7	0.002	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	18230719	3L_18230719_SNP [dm3] 3L_18237619_SNP [dm6]	G	T	7.678e^-7	0.002	INTERGENIC
3R	7119504	3R_7119504_SNP [dm3] 3R_11293782_SNP [dm6]	T	C	7.703e^-7	0.002	INTRON CR31386
2R	11853293	2R_11853293_SNP [dm3] 2R_15965788_SNP [dm6]	A	G	7.725e^-7	0.002	SYNONYMOUS_CODING Strn-Mlck INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8414963	2R_8414963_SNP [dm3] 2R_12527458_SNP [dm6]	T	C	7.730e^-7	0.002	INTERGENIC
3L	11935221	3L_11935221_SNP [dm3] 3L_11942121_SNP [dm6]	A	T	7.793e^-7	0.002	SYNONYMOUS_CODING Rpt4R
3R	17636392	3R_17636392_SNP [dm3] 3R_21810670_SNP [dm6]	A	G	7.912e^-7	0.002	INTRON CASK
2R	14899646	2R_14899646_SNP [dm3] 2R_19012141_SNP [dm6]	T	C	7.913e^-7	0.002	INTERGENIC
3L	12037129	3L_12037129_SNP [dm3] 3L_12044029_SNP [dm6]	C	T	7.916e^-7	0.002	NON_SYNONYMOUS_CODING CG6793 UPSTREAM CG43638 INTRON rols
2R	12476054	2R_12476054_SNP [dm3] 2R_16588549_SNP [dm6]	C	T	7.955e^-7	0.002	SYNONYMOUS_CODING CG8311 DOWNSTREAM CG8306	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	3621500	3L_3621500_INS [dm3] 3L_3621500_INS [dm6]	T	TT	8.121e^-7	0.002	UPSTREAM CG14974 INTERGENIC
3L	2844941	3L_2844941_SNP [dm3] 3L_2844941_SNP [dm6]	A	G	8.129e^-7	0.002	INTRON CG43444	TF binding site mE1_TFBS_Trl
3R	26571269	3R_26571269_SNP [dm3] 3R_30745547_SNP [dm6]	C	T	8.131e^-7	0.002	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12714961	3L_12714961_SNP [dm3] 3L_12721861_SNP [dm6]	C	T	8.135e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	20485021	3L_20485021_SNP [dm3] 3L_20491921_SNP [dm6]	T	G	8.147e^-7	0.002	UPSTREAM CG6020 INTRON ZnT77C
3R	7500593	3R_7500593_SNP [dm3] 3R_11674871_SNP [dm6]	C	T	8.161e^-7	0.002	UTR_3_PRIME CG14715 DOWNSTREAM CG18476 & 1 other	TF binding site mE1_TFBS_sens
3R	10754492	3R_10754492_SNP [dm3] 3R_14928770_SNP [dm6]	G	T	8.168e^-7	0.002	INTERGENIC
3L	2835097	3L_2835097_SNP [dm3] 3L_2835097_SNP [dm6]	T	C	8.215e^-7	0.002	INTRON CG43444
3R	26571245	3R_26571245_MNP [dm3] 3R_30745523_MNP [dm6]	GCA	CTT	8.298e^-7	0.002	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	16081061	3L_16081061_DEL [dm3] 3L_16087961_DEL [dm6]	TT	T	8.322e^-7	0.002	UTR_3_PRIME CG5235 UPSTREAM Taspase1	TF binding site BDTNP1_TFBS_dl
X	2512123	X_2512123_SNP [dm3] X_2618090_SNP [dm6]	C	T	8.336e^-7	0.002	UTR_3_PRIME Tsp3A DOWNSTREAM Tsp3A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_run
2L	11022031	2L_11022031_SNP [dm3] 2L_11022031_SNP [dm6]	A	G	8.365e^-7	0.002	INTRON Samuel
3L	20483996	3L_20483996_SNP [dm3] 3L_20490896_SNP [dm6]	T	A	8.371e^-7	0.002	INTRON ZnT77C
3L	22423681	3L_22423681_SNP [dm3] 3L_22430581_SNP [dm6]	T	G	8.409e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	22435746	3L_22435746_SNP [dm3] 3L_22442646_SNP [dm6]	C	T	8.409e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	20477300	2L_20477300_SNP [dm3] 2L_20477300_SNP [dm6]	A	G	8.456e^-7	0.002	INTRON CR44980 EXON CR43234	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3R	6137699	3R_6137699_SNP [dm3] 3R_10311977_SNP [dm6]	T	G	8.510e^-7	0.002	UPSTREAM CG6293 DOWNSTREAM Bruce INTERGENIC	TF binding site mE1_TFBS_cad
3R	14912009	3R_14912009_SNP [dm3] 3R_19086287_SNP [dm6]	T	C	8.510e^-7	0.002	INTRON cdi	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	11988515	3R_11988515_SNP [dm3] 3R_16162793_SNP [dm6]	C	A	8.548e^-7	0.002	INTRON CG6006
3L	21349541	3L_21349541_SNP [dm3] 3L_21356441_SNP [dm6]	C	T	8.597e^-7	0.002	UPSTREAM CG12971 INTRON CG12971
2L	4346090	2L_4346090_SNP [dm3] 2L_4346090_SNP [dm6]	A	T	8.673e^-7	0.002	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	25531107	3R_25531107_SNP [dm3] 3R_29705385_SNP [dm6]	T	C	8.674e^-7	0.002	INTERGENIC
3R	26072551	3R_26072551_SNP [dm3] 3R_30246829_SNP [dm6]	C	G	8.676e^-7	0.002	UPSTREAM CG9733 INTERGENIC
3R	10456828	3R_10456828_SNP [dm3] 3R_14631106_SNP [dm6]	G	A	8.699e^-7	0.002	INTRON CG7886 & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
X	18385540	X_18385540_SNP [dm3] X_18491507_SNP [dm6]	G	A	8.719e^-7	0.002	SYNONYMOUS_CODING CG15044
X	8837404	X_8837404_SNP [dm3] X_8943371_SNP [dm6]	G	A	8.737e^-7	0.002	INTRON rdgA
2R	11352258	2R_11352258_SNP [dm3] 2R_15464753_SNP [dm6]	C	A	8.758e^-7	0.002	DOWNSTREAM CG43729 INTRON CG43729
2R	6695423	2R_6695423_SNP [dm3] 2R_10807918_SNP [dm6]	A	T	8.764e^-7	0.002	INTRON wde	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
X	8053887	X_8053887_SNP [dm3] X_8159854_SNP [dm6]	A	G	8.841e^-7	0.002	UPSTREAM CG15337 DOWNSTREAM GIIIspla2 INTERGENIC
3R	27171498	3R_27171498_INS [dm3] 3R_31345776_INS [dm6]	G	GTAATGG	8.852e^-7	0.002	INTRON CG34347	TF binding site mE1_TFBS_chinmo
3R	27021812	3R_27021812_SNP [dm3] 3R_31196090_SNP [dm6]	G	A	8.869e^-7	0.002	UPSTREAM mesh & 1 other INTERGENIC
3R	26571253	3R_26571253_SNP [dm3] 3R_30745531_SNP [dm6]	T	A	8.917e^-7	0.002	UTR_3_PRIME Npc2h UPSTREAM Npc2g DOWNSTREAM Npc2h	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	2859945	2R_2859945_SNP [dm3] 2R_6972440_SNP [dm6]	C	A	8.943e^-7	0.002	SYNONYMOUS_CODING Cyp6u1 UPSTREAM mim & 1 other	TF binding site mE1_TFBS_cad
3L	7723474	3L_7723474_SNP [dm3] 3L_7730374_SNP [dm6]	G	A	8.966e^-7	0.002	SYNONYMOUS_CODING CG8492 INTRON CG32373	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	14101663	3L_14101663_SNP [dm3] 3L_14108563_SNP [dm6]	G	A	8.984e^-7	0.002	UPSTREAM Sox21a INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	14102907	3L_14102907_SNP [dm3] 3L_14109807_SNP [dm6]	G	T	8.984e^-7	0.002	INTERGENIC
3L	16563708	3L_16563708_SNP [dm3] 3L_16570608_SNP [dm6]	A	G	8.999e^-7	0.002	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	16564225	3L_16564225_SNP [dm3] 3L_16571125_SNP [dm6]	T	C	8.999e^-7	0.002	INTRON Mipp1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	497957	2R_497957_SNP [dm3] 2R_4610452_SNP [dm6]	A	G	9.018e^-7	0.002	DOWNSTREAM p120ctn INTERGENIC	transposable element FlyBase
3L	22423714	3L_22423714_SNP [dm3] 3L_22430614_SNP [dm6]	G	C	9.082e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	7220788	3R_7220788_SNP [dm3] 3R_11395066_SNP [dm6]	G	A	9.131e^-7	0.002	UTR_3_PRIME pros
X	11995517	X_11995517_SNP [dm3] X_12101484_SNP [dm6]	T	G	9.164e^-7	0.002	INTRON CR43960 & 1 other
3L	9824569	3L_9824569_SNP [dm3] 3L_9831469_SNP [dm6]	T	C	9.270e^-7	0.002	INTRON CG43897	TF binding site mE1_TFBS_cad
2R	8358894	2R_8358894_SNP [dm3] 2R_12471389_SNP [dm6]	A	T	9.326e^-7	0.002	NON_SYNONYMOUS_CODING CG8545 UPSTREAM CG8550 INTRON dgt5	TF binding site mE1_TFBS_HSA
3R	27002208	3R_27002208_SNP [dm3] 3R_31176486_SNP [dm6]	A	C	9.335e^-7	0.002	INTRON Gycbeta100B
3R	12086689	3R_12086689_SNP [dm3] 3R_16260967_SNP [dm6]	T	A	9.386e^-7	0.002	DOWNSTREAM tara & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	17020553	2R_17020553_SNP [dm3] 2R_21133048_SNP [dm6]	A	T	9.395e^-7	0.002	INTRON Magi
2R	17021108	2R_17021108_SNP [dm3] 2R_21133603_SNP [dm6]	T	A	9.395e^-7	0.002	INTRON Magi
3R	25988879	3R_25988879_SNP [dm3] 3R_30163157_SNP [dm6]	C	T	9.415e^-7	0.002	INTERGENIC
3L	1194172	3L_1194172_SNP [dm3] 3L_1194172_SNP [dm6]	C	T	9.448e^-7	0.002	UPSTREAM Trh DOWNSTREAM LysX INTERGENIC
3R	6290437	3R_6290437_SNP [dm3] 3R_10464715_SNP [dm6]	T	C	9.455e^-7	0.002	EXON CR44955	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26054712	3R_26054712_SNP [dm3] 3R_30228990_SNP [dm6]	A	T	9.527e^-7	0.002	INTERGENIC	TF binding site BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3R	25602983	3R_25602983_SNP [dm3] 3R_29777261_SNP [dm6]	G	A	9.542e^-7	0.002	INTRON kay
3R	6311761	3R_6311761_SNP [dm3] 3R_10486039_SNP [dm6]	G	C	9.543e^-7	0.002	INTERGENIC
3R	6480564	3R_6480564_SNP [dm3] 3R_10654842_SNP [dm6]	C	T	9.637e^-7	0.002	INTERGENIC
X	8837396	X_8837396_SNP [dm3] X_8943363_SNP [dm6]	C	T	9.649e^-7	0.002	INTRON rdgA
3R	26085905	3R_26085905_SNP [dm3] 3R_30260183_SNP [dm6]	G	A	9.692e^-7	0.002	INTERGENIC
3R	10255301	3R_10255301_INS [dm3] 3R_14429579_INS [dm6]	G	GTTCT	9.694e^-7	0.002	INTRON cv-c
3R	10338584	3R_10338584_SNP [dm3] 3R_14512862_SNP [dm6]	C	T	9.695e^-7	0.002	DOWNSTREAM mRpL11 INTRON CG8461	TF binding site mE1_TFBS_sens
3L	16138844	3L_16138844_SNP [dm3] 3L_16145744_SNP [dm6]	T	C	9.696e^-7	0.002	INTRON CG5151
3R	27021008	3R_27021008_SNP [dm3] 3R_31195286_SNP [dm6]	G	A	9.789e^-7	0.002	NON_SYNONYMOUS_CODING mesh DOWNSTREAM bnk	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA
3R	22115346	3R_22115346_SNP [dm3] 3R_26289624_SNP [dm6]	G	A	9.856e^-7	0.002	INTERGENIC
3L	13177624	3L_13177624_SNP [dm3] 3L_13184524_SNP [dm6]	C	T	9.879e^-7	0.002	INTERGENIC
3R	5220565	3R_5220565_SNP [dm3] 3R_9394843_SNP [dm6]	G	T	9.881e^-7	0.002	UPSTREAM FER INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2L	5496372	2L_5496372_SNP [dm3] 2L_5496372_SNP [dm6]	G	C	9.918e^-7	0.002	INTERGENIC
2R	11347614	2R_11347614_SNP [dm3] 2R_15460109_SNP [dm6]	A	T	1.004e^-6	0.002	INTRON CG43729
X	12145819	X_12145819_INS [dm3] X_12251786_INS [dm6]	T	TGGGATT	1.008e^-6	0.002	INTRON Ten-a	TF binding site mE1_TFBS_inv
2R	11346345	2R_11346345_SNP [dm3] 2R_15458840_SNP [dm6]	C	G	1.008e^-6	0.002	INTRON CG43729	TF binding site BDTNP1_TFBS_sna
X	12118670	X_12118670_SNP [dm3] X_12224637_SNP [dm6]	C	T	1.009e^-6	0.002	INTRON Ten-a	TF binding site mE1_TFBS_cad
2R	17020558	2R_17020558_SNP [dm3] 2R_21133053_SNP [dm6]	G	T	1.011e^-6	0.002	INTRON Magi
2L	4346092	2L_4346092_INS [dm3] 2L_4346092_INS [dm6]	T	TG	1.015e^-6	0.002	DOWNSTREAM Atet INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3L	16621247	3L_16621247_SNP [dm3] 3L_16628147_SNP [dm6]	A	G	1.024e^-6	0.002	INTRON Abl	TF binding site mE1_TFBS_cad
3L	18919808	3L_18919808_SNP [dm3] 3L_18926708_SNP [dm6]	A	T	1.040e^-6	0.002	DOWNSTREAM CG43049 INTRON CG32204	TF binding site mE1_TFBS_inv
3R	14458025	3R_14458025_SNP [dm3] 3R_18632303_SNP [dm6]	C	A	1.044e^-6	0.002	INTRON qin & 1 other
3R	26088654	3R_26088654_SNP [dm3] 3R_30262932_SNP [dm6]	G	C	1.046e^-6	0.002	INTERGENIC
2R	18108654	2R_18108654_SNP [dm3] 2R_22221149_SNP [dm6]	A	G	1.048e^-6	0.002	UPSTREAM Oatp58Da DOWNSTREAM Oatp58Db INTERGENIC
2R	10925616	2R_10925616_SNP [dm3] 2R_15038111_SNP [dm6]	A	G	1.049e^-6	0.002	INTRON hbs
2R	17494314	2R_17494314_SNP [dm3] 2R_21606809_SNP [dm6]	A	G	1.052e^-6	0.002	UTR_5_PRIME CG10433 UPSTREAM CR43243	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	13241256	3L_13241256_SNP [dm3] 3L_13248156_SNP [dm6]	C	T	1.054e^-6	0.002	SYNONYMOUS_CODING CG32119 INTRON caps
3L	3489701	3L_3489701_SNP [dm3] 3L_3489701_SNP [dm6]	T	G	1.057e^-6	0.002	INTRON CG42324
3L	19367175	3L_19367175_SNP [dm3] 3L_19374075_SNP [dm6]	G	A	1.058e^-6	0.002	INTRON CG32206
3L	5033023	3L_5033023_SNP [dm3] 3L_5033023_SNP [dm6]	T	C	1.064e^-6	0.002	INTRON Con	TF binding site mE1_TFBS_inv
X	15471785	X_15471785_SNP [dm3] X_15577752_SNP [dm6]	G	A	1.070e^-6	0.002	SYNONYMOUS_CODING cerv UPSTREAM CG7872 DOWNSTREAM betaNACtes5 INTRON cerv	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_sens
X	3171199	X_3171199_SNP [dm3] X_3277166_SNP [dm6]	G	T	1.073e^-6	0.002	INTRON dnc
3R	15946477	3R_15946477_SNP [dm3] 3R_20120755_SNP [dm6]	C	T	1.078e^-6	0.002	UPSTREAM Gr92a INTERGENIC
3R	6557048	3R_6557048_SNP [dm3] 3R_10731326_SNP [dm6]	T	G	1.079e^-6	0.002	INTERGENIC
2R	7940879	2R_7940879_SNP [dm3] 2R_12053374_SNP [dm6]	A	C	1.097e^-6	0.002	INTRON CG44314
2R	17798334	2R_17798334_SNP [dm3] 2R_21910829_SNP [dm6]	C	T	1.097e^-6	0.002	INTRON Fili
2R	17798344	2R_17798344_SNP [dm3] 2R_21910839_SNP [dm6]	A	G	1.097e^-6	0.002	INTRON Fili
X	16036689	X_16036689_SNP [dm3] X_16142656_SNP [dm6]	G	T	1.099e^-6	0.002	INTRON disco-r
X	9868764	X_9868764_SNP [dm3] X_9974731_SNP [dm6]	G	A	1.102e^-6	0.002	INTRON CG43386
X	10382696	X_10382696_DEL [dm3] X_10488663_DEL [dm6]	AGAT	TC	1.103e^-6	0.002	INTERGENIC
X	10382713	X_10382713_SNP [dm3] X_10488680_SNP [dm6]	T	A	1.103e^-6	0.002	INTERGENIC
3R	25562517	3R_25562517_SNP [dm3] 3R_29736795_SNP [dm6]	T	A	1.108e^-6	0.002	UPSTREAM CG7598 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
3L	10456508	3L_10456508_SNP [dm3] 3L_10463408_SNP [dm6]	T	G	1.113e^-6	0.002	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3R	9327265	3R_9327265_SNP [dm3] 3R_13501543_SNP [dm6]	C	T	1.118e^-6	0.002	INTERGENIC
3L	12141204	3L_12141204_SNP [dm3] 3L_12148104_SNP [dm6]	C	T	1.120e^-6	0.002	INTRON Nrx-IV	TF binding site BDTNP1_TFBS_dl
2L	9727589	2L_9727589_SNP [dm3] 2L_9727589_SNP [dm6]	A	C	1.121e^-6	0.002	INTRON Nckx30C
2R	11319307	2R_11319307_SNP [dm3] 2R_15431802_SNP [dm6]	A	T	1.122e^-6	0.002	INTRON CG43729
X	8046589	X_8046589_SNP [dm3] X_8152556_SNP [dm6]	C	G	1.126e^-6	0.002	UPSTREAM CG18262 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
X	10382689	X_10382689_SNP [dm3] X_10488656_SNP [dm6]	T	C	1.131e^-6	0.002	INTERGENIC
X	10470716	X_10470716_SNP [dm3] X_10576683_SNP [dm6]	A	G	1.144e^-6	0.002	INTRON spri
3R	4107729	3R_4107729_SNP [dm3] 3R_8282007_SNP [dm6]	C	T	1.147e^-6	0.002	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd mE1_TFBS_HSA mE1_TFBS_inv
X	10382721	X_10382721_SNP [dm3] X_10488688_SNP [dm6]	C	A	1.149e^-6	0.002	INTERGENIC
3R	5220638	3R_5220638_SNP [dm3] 3R_9394916_SNP [dm6]	A	G	1.150e^-6	0.002	UPSTREAM FER INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	11326906	2R_11326906_SNP [dm3] 2R_15439401_SNP [dm6]	G	A	1.151e^-6	0.002	INTRON CG43729
2R	11358984	2R_11358984_SNP [dm3] 2R_15471479_SNP [dm6]	T	C	1.151e^-6	0.002	UTR_3_PRIME CG43729 DOWNSTREAM CG43729 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_HSA
3L	2037074	3L_2037074_SNP [dm3] 3L_2037074_SNP [dm6]	G	A	1.156e^-6	0.002	DOWNSTREAM CG42355 INTERGENIC
2R	15796365	2R_15796365_SNP [dm3] 2R_19908860_SNP [dm6]	T	C	1.159e^-6	0.002	DOWNSTREAM CR44573 INTERGENIC
3R	10263420	3R_10263420_SNP [dm3] 3R_14437698_SNP [dm6]	C	T	1.160e^-6	0.002	INTRON cv-c
2L	9557704	2L_9557704_SNP [dm3] 2L_9557704_SNP [dm6]	G	A	1.164e^-6	0.002	INTRON jp
X	18800002	X_18800002_SNP [dm3] X_18905969_SNP [dm6]	A	G	1.166e^-6	0.002	INTRON CG7378
3R	12318649	3R_12318649_SNP [dm3] 3R_16492927_SNP [dm6]	T	G	1.167e^-6	0.002	SYNONYMOUS_CODING Cad89D
3L	14062861	3L_14062861_SNP [dm3] 3L_14069761_SNP [dm6]	C	T	1.169e^-6	0.002	INTRON CG32138
3L	7652787	3L_7652787_SNP [dm3] 3L_7659687_SNP [dm6]	T	C	1.169e^-6	0.002	SYNONYMOUS_CODING Ank2 UTR_3_PRIME CG44195 INTRON CG32373 & 1 other	TF binding site mE1_TFBS_cad mE1_TFBS_sens
3R	25750821	3R_25750821_SNP [dm3] 3R_29925099_SNP [dm6]	C	T	1.170e^-6	0.002	UPSTREAM Jon99Cii DOWNSTREAM Jon99Ci INTERGENIC
3L	7728466	3L_7728466_DEL [dm3] 3L_7735366_DEL [dm6]	GAG	G	1.172e^-6	0.002	INTRON CG32373 & 1 other
3L	22844951	3L_22844951_INS [dm3] 3L_22851851_INS [dm6]	A	TT	1.172e^-6	0.002	UPSTREAM CR43426 DOWNSTREAM CG32462 INTRON CR43426	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	26092656	3R_26092656_SNP [dm3] 3R_30266934_SNP [dm6]	A	T	1.172e^-6	0.002	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_Kr
3L	18837102	3L_18837102_SNP [dm3] 3L_18844002_SNP [dm6]	G	T	1.177e^-6	0.002	INTRON Indy
2R	18541298	2R_18541298_SNP [dm3] 2R_22653793_SNP [dm6]	C	T	1.184e^-6	0.002	NON_SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr
2R	18541333	2R_18541333_SNP [dm3] 2R_22653828_SNP [dm6]	T	G	1.184e^-6	0.002	NON_SYNONYMOUS_CODING Cyp6d2 DOWNSTREAM nsr & 1 other
3R	27162074	3R_27162074_SNP [dm3] 3R_31336352_SNP [dm6]	C	T	1.188e^-6	0.002	INTRON CG34347
2R	17837562	2R_17837562_SNP [dm3] 2R_21950057_SNP [dm6]	A	G	1.198e^-6	0.002	INTERGENIC
X	4923874	X_4923874_SNP [dm3] X_5029841_SNP [dm6]	A	T	1.208e^-6	0.002	INTRON CR44833
2R	19033811	2R_19033811_SNP [dm3] 2R_23146288_SNP [dm6]	G	C	1.208e^-6	0.002	INTERGENIC
3L	14353722	3L_14353722_SNP [dm3] 3L_14360622_SNP [dm6]	C	T	1.211e^-6	0.002	INTRON fz
X	3625405	X_3625405_SNP [dm3] X_3731372_SNP [dm6]	C	T	1.211e^-6	0.002	INTRON tlk
3L	3922846	3L_3922846_SNP [dm3] 3L_3922846_SNP [dm6]	A	G	1.214e^-6	0.002	INTRON Eip63F-1
3L	12983656	3L_12983656_SNP [dm3] 3L_12990556_SNP [dm6]	T	C	1.215e^-6	0.002	INTERGENIC
2L	16485009	2L_16485009_SNP [dm3] 2L_16485009_SNP [dm6]	C	T	1.222e^-6	0.002	INTRON dac	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb
3L	10456645	3L_10456645_SNP [dm3] 3L_10463545_SNP [dm6]	G	A	1.235e^-6	0.002	UPSTREAM CG32061 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad
3R	7496743	3R_7496743_SNP [dm3] 3R_11671021_SNP [dm6]	A	G	1.236e^-6	0.002	INTRON CG42327
X	16987995	X_16987995_SNP [dm3] X_17093962_SNP [dm6]	A	G	1.236e^-6	0.002	INTRON CG16700 & 1 other
2L	16016654	2L_16016654_SNP [dm3] 2L_16016654_SNP [dm6]	G	A	1.243e^-6	0.002	INTRON beat-Ic
3R	26829484	3R_26829484_SNP [dm3] 3R_31003762_SNP [dm6]	A	C	1.270e^-6	0.002	INTRON 5-HT7
2R	14495179	2R_14495179_SNP [dm3] 2R_18607674_SNP [dm6]	A	G	1.271e^-6	0.002	INTRON GEFmeso	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_cad mE1_TFBS_HSA
X	12590428	X_12590428_SNP [dm3] X_12696395_SNP [dm6]	C	A	1.275e^-6	0.002	INTRON Smr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	18541209	2R_18541209_SNP [dm3] 2R_22653704_SNP [dm6]	C	T	1.275e^-6	0.002	DOWNSTREAM nsr INTRON Cyp6d2
3L	13241181	3L_13241181_SNP [dm3] 3L_13248081_SNP [dm6]	A	T	1.278e^-6	0.002	SYNONYMOUS_CODING CG32119 INTRON caps
3L	1935180	3L_1935180_SNP [dm3] 3L_1935180_SNP [dm6]	G	A	1.283e^-6	0.002	INTRON CG5687
X	10433683	X_10433683_SNP [dm3] X_10539650_SNP [dm6]	C	G	1.284e^-6	0.002	INTRON spri	TF binding site mE1_TFBS_HSA
3L	12614233	3L_12614233_SNP [dm3] 3L_12621133_SNP [dm6]	T	C	1.286e^-6	0.002	UTR_3_PRIME caup
2R	9553386	2R_9553386_SNP [dm3] 2R_13665881_SNP [dm6]	G	A	1.290e^-6	0.002	SYNONYMOUS_CODING CG13337 INTRON fas
2R	8185593	2R_8185593_SNP [dm3] 2R_12298088_SNP [dm6]	A	G	1.293e^-6	0.002	UTR_3_PRIME CG42700 UPSTREAM CR45271 DOWNSTREAM CG8850
2L	8368804	2L_8368804_SNP [dm3] 2L_8368804_SNP [dm6]	C	A	1.297e^-6	0.002	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2R	10197176	2R_10197176_SNP [dm3] 2R_14309671_SNP [dm6]	A	T	1.297e^-6	0.002	INTRON Shroom	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_inv
2R	17168990	2R_17168990_SNP [dm3] 2R_21281485_SNP [dm6]	C	T	1.299e^-6	0.002	NON_SYNONYMOUS_CODING CG34203 UPSTREAM MFS16 DOWNSTREAM Rgk3	TF binding site BDTNP1_TFBS_dl
3L	17489642	3L_17489642_SNP [dm3] 3L_17496542_SNP [dm6]	C	T	1.301e^-6	0.002	INTRON Oatp74D	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	8368623	2L_8368623_SNP [dm3] 2L_8368623_SNP [dm6]	C	T	1.302e^-6	0.002	SYNONYMOUS_CODING Pp2A-29B	TF binding site mE1_TFBS_cad
2L	1852212	2L_1852212_SNP [dm3] 2L_1852212_SNP [dm6]	A	G	1.303e^-6	0.002	INTRON wry
X	13685450	X_13685450_SNP [dm3] X_13791417_SNP [dm6]	C	A	1.304e^-6	0.002	UPSTREAM CG10993 INTRON inaE
3L	13978968	3L_13978968_SNP [dm3] 3L_13985868_SNP [dm6]	A	G	1.311e^-6	0.002	UTR_5_PRIME CG17364 UPSTREAM CG17362	TF binding site mE1_TFBS_cad
3R	6265576	3R_6265576_SNP [dm3] 3R_10439854_SNP [dm6]	G	T	1.317e^-6	0.002	INTERGENIC
3R	16771750	3R_16771750_SNP [dm3] 3R_20946028_SNP [dm6]	G	A	1.319e^-6	0.002	UPSTREAM CG31191 INTERGENIC	TF binding site mE1_TFBS_cad
2L	9563771	2L_9563771_SNP [dm3] 2L_9563771_SNP [dm6]	A	G	1.321e^-6	0.002	INTRON jp

By genomic position
Variant impact
Gene name

Censored phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results