DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.513e^-3)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test

Covariate	p-value	Significance
wolba	0.05327
In_3R_Mo	0.09911

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
wolba	3.8215	0.0506
In_3R_Mo	5.3048	0.0705

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

1702 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	3220508	2R_3220508_SNP [dm3] 2R_7333003_SNP [dm6]	C	G	2.580e^-7	0.484	INTRON CR45129 & 1 other
2L	2540083	2L_2540083_SNP [dm3] 2L_2540083_SNP [dm6]	G	A	6.181e^-7	0.557	INTERGENIC
3L	15274858	3L_15274858_SNP [dm3] 3L_15281758_SNP [dm6]	A	T	1.282e^-6	0.557	INTERGENIC
3L	5442679	3L_5442679_SNP [dm3] 3L_5449579_SNP [dm6]	T	C	1.563e^-6	0.557	INTERGENIC
3L	13636608	3L_13636608_SNP [dm3] 3L_13643508_SNP [dm6]	G	A	1.576e^-6	0.557	INTRON bru-3
2R	6345254	2R_6345254_SNP [dm3] 2R_10457749_SNP [dm6]	G	T	1.984e^-6	0.557	INTRON Galphao & 1 other
2R	11707830	2R_11707830_SNP [dm3] 2R_15820325_SNP [dm6]	T	C	2.212e^-6	0.557	SYNONYMOUS_CODING CG33465 INTRON tun
2L	19927216	2L_19927216_INS [dm3] 2L_19927216_INS [dm6]	C	CGGGC	2.401e^-6	0.557	INTRON sick
2L	7559987	2L_7559987_SNP [dm3] 2L_7559987_SNP [dm6]	T	C	2.672e^-6	0.557	INTRON RapGAP1
3L	7774810	3L_7774810_SNP [dm3] 3L_7781710_SNP [dm6]	C	T	3.035e^-6	0.569	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	11547933	3L_11547933_SNP [dm3] 3L_11554833_SNP [dm6]	A	G	3.790e^-6	0.646	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
2L	7898315	2L_7898315_DEL [dm3] 2L_7898315_DEL [dm6]	AA	A	4.173e^-6	0.652	INTRON Snoo
3L	18580469	3L_18580469_SNP [dm3] 3L_18587369_SNP [dm6]	A	T	5.987e^-6	0.864	INTERGENIC
2L	1865537	2L_1865537_SNP [dm3] 2L_1865537_SNP [dm6]	C	T	6.782e^-6	0.909	SYNONYMOUS_CODING CG31663
3L	7704031	3L_7704031_SNP [dm3] 3L_7710931_SNP [dm6]	G	A	9.283e^-6	0.991	SYNONYMOUS_CODING Ank2 INTRON CG32373	TF binding site mE1_TFBS_chinmo
X	5242623	X_5242623_SNP [dm3] X_5348590_SNP [dm6]	G	C	9.601e^-6	0.991	INTRON SK
3R	25370718	3R_25370718_SNP [dm3] 3R_29544996_SNP [dm6]	T	C	1.004e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	8244015	3L_8244015_SNP [dm3] 3L_8250915_SNP [dm6]	C	T	1.055e^-5	0.991	INTRON Dscam4
3L	13891971	3L_13891971_SNP [dm3] 3L_13898871_SNP [dm6]	C	A	1.098e^-5	0.991	INTRON dysc
X	18966091	X_18966091_SNP [dm3] X_19072058_SNP [dm6]	C	T	1.213e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
X	3433338	X_3433338_SNP [dm3] X_3539305_SNP [dm6]	A	G	1.315e^-5	0.991	INTRON CG32791
2R	13354309	2R_13354309_SNP [dm3] 2R_17466804_SNP [dm6]	T	C	1.343e^-5	0.991	SYNONYMOUS_CODING Tes	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
3L	10784214	3L_10784214_SNP [dm3] 3L_10791114_SNP [dm6]	T	G	1.422e^-5	0.991	INTERGENIC
3L	16457852	3L_16457852_SNP [dm3] 3L_16464752_SNP [dm6]	A	G	1.433e^-5	0.991	INTRON CG33158
3L	7120009	3L_7120009_SNP [dm3] 3L_7126909_SNP [dm6]	G	A	1.467e^-5	0.991	SYNONYMOUS_CODING BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	6497351	3R_6497351_SNP [dm3] 3R_10671629_SNP [dm6]	T	G	1.570e^-5	0.991	INTERGENIC
3L	11045668	3L_11045668_SNP [dm3] 3L_11052568_SNP [dm6]	A	C	1.574e^-5	0.991	INTERGENIC
3L	16457923	3L_16457923_SNP [dm3] 3L_16464823_SNP [dm6]	A	T	1.757e^-5	0.991	INTRON CG33158
2L	19892638	2L_19892638_SNP [dm3] 2L_19892638_SNP [dm6]	A	T	1.760e^-5	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19892614	2L_19892614_SNP [dm3] 2L_19892614_SNP [dm6]	G	A	1.865e^-5	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	8022696	3L_8022696_SNP [dm3] 3L_8029596_SNP [dm6]	T	C	1.903e^-5	0.991	UPSTREAM tRNA:CR32370 INTRON nmo
3R	9584740	3R_9584740_SNP [dm3] 3R_13759018_SNP [dm6]	G	A	1.919e^-5	0.991	SYNONYMOUS_CODING CG34383 UTR_3_PRIME CG34383	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	6622118	2L_6622118_DEL [dm3] 2L_6622118_DEL [dm6]	CT	C	1.960e^-5	0.991	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
2L	19892641	2L_19892641_SNP [dm3] 2L_19892641_SNP [dm6]	G	A	1.962e^-5	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11662170	X_11662170_SNP [dm3] X_11768137_SNP [dm6]	C	T	2.171e^-5	0.991	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2L	7875856	2L_7875856_INS [dm3] 2L_7875856_INS [dm6]	T	TT	2.177e^-5	0.991	INTRON spz3
3R	22815628	3R_22815628_SNP [dm3] 3R_26989906_SNP [dm6]	A	G	2.191e^-5	0.991	UPSTREAM CG31076 INTERGENIC
3L	16457924	3L_16457924_SNP [dm3] 3L_16464824_SNP [dm6]	T	A	2.251e^-5	0.991	INTRON CG33158
3L	3388747	3L_3388747_SNP [dm3] 3L_3388747_SNP [dm6]	G	A	2.294e^-5	0.991	INTERGENIC
2L	2883195	2L_2883195_SNP [dm3] 2L_2883195_SNP [dm6]	A	T	2.428e^-5	0.991	UPSTREAM NTPase INTRON NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	3433596	X_3433596_SNP [dm3] X_3539563_SNP [dm6]	T	C	2.491e^-5	0.991	INTRON CG32791
3L	3388777	3L_3388777_SNP [dm3] 3L_3388777_SNP [dm6]	G	A	2.522e^-5	0.991	INTERGENIC
3L	8023846	3L_8023846_SNP [dm3] 3L_8030746_SNP [dm6]	G	A	2.637e^-5	0.991	INTRON nmo
2L	794737	2L_794737_SNP [dm3] 2L_794737_SNP [dm6]	A	G	2.688e^-5	0.991	INTERGENIC
X	12223086	X_12223086_SNP [dm3] X_12329053_SNP [dm6]	C	G	2.740e^-5	0.991	SYNONYMOUS_CODING Ten-a	TF binding site mE1_TFBS_chinmo
2L	807571	2L_807571_DEL [dm3] 2L_807571_DEL [dm6]	TT	T	2.749e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
3R	22416692	3R_22416692_SNP [dm3] 3R_26590970_SNP [dm6]	G	C	2.794e^-5	0.991	INTRON scrib
2L	18931786	2L_18931786_SNP [dm3] 2L_18931786_SNP [dm6]	G	C	2.815e^-5	0.991	INTRON ssp3
2R	4788415	2R_4788415_SNP [dm3] 2R_8900910_SNP [dm6]	G	A	2.816e^-5	0.991	NON_SYNONYMOUS_CODING MrgBP UPSTREAM ana2 & 1 other DOWNSTREAM CG13751	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
3L	3388748	3L_3388748_SNP [dm3] 3L_3388748_SNP [dm6]	G	C	2.862e^-5	0.991	INTERGENIC
3L	11047025	3L_11047025_SNP [dm3] 3L_11053925_SNP [dm6]	C	T	2.864e^-5	0.991	UPSTREAM CG7888 INTERGENIC
3R	26157271	3R_26157271_DEL [dm3] 3R_30331549_DEL [dm6]	TTGCACA	T	2.907e^-5	0.991	INTRON hdc
2L	19859390	2L_19859390_SNP [dm3] 2L_19859390_SNP [dm6]	G	T	2.938e^-5	0.991	INTRON sick
3L	8023775	3L_8023775_SNP [dm3] 3L_8030675_SNP [dm6]	T	A	3.072e^-5	0.991	INTRON nmo
2R	6823463	2R_6823463_SNP [dm3] 2R_10935958_SNP [dm6]	T	C	3.223e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	11707821	2R_11707821_SNP [dm3] 2R_15820316_SNP [dm6]	C	T	3.258e^-5	0.991	SYNONYMOUS_CODING CG33465 INTRON tun
3L	10784282	3L_10784282_SNP [dm3] 3L_10791182_SNP [dm6]	C	A	3.335e^-5	0.991	INTERGENIC
3R	24834544	3R_24834544_SNP [dm3] 3R_29008822_SNP [dm6]	A	G	3.362e^-5	0.991	INTRON wat EXON mir-4947
2L	17456757	2L_17456757_SNP [dm3] 2L_17456757_SNP [dm6]	A	G	3.416e^-5	0.991	UTR_3_PRIME CG18563 UPSTREAM CG6639 INTRON CG5050	TF binding site mE1_TFBS_cad
3R	5695062	3R_5695062_SNP [dm3] 3R_9869340_SNP [dm6]	C	A	3.572e^-5	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_ttk
3L	7943815	3L_7943815_SNP [dm3] 3L_7950715_SNP [dm6]	A	G	3.669e^-5	0.991	SYNONYMOUS_CODING exex
X	3433324	X_3433324_DEL [dm3] X_3539291_DEL [dm6]	GGTATGG	G	3.691e^-5	0.991	INTRON CG32791
2R	1832630	2R_1832630_SNP [dm3] 2R_5945125_SNP [dm6]	C	A	3.714e^-5	0.991	INTERGENIC	transposable element FlyBase
2L	2111794	2L_2111794_SNP [dm3] 2L_2111794_SNP [dm6]	T	C	4.034e^-5	0.991	INTERGENIC
2R	12409607	2R_12409607_SNP [dm3] 2R_16522102_SNP [dm6]	G	C	4.218e^-5	0.991	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12014247	2L_12014247_SNP [dm3] 2L_12014247_SNP [dm6]	A	T	4.457e^-5	0.991	DOWNSTREAM CG6734 & 1 other INTERGENIC
2L	19895952	2L_19895952_SNP [dm3] 2L_19895952_SNP [dm6]	C	A	4.610e^-5	0.991	UPSTREAM sick INTRON sick	silencer mE1_HDAC_PRE
2L	18467947	2L_18467947_SNP [dm3] 2L_18467947_SNP [dm6]	G	T	4.653e^-5	0.991	INTRON let-7-C
2L	19892637	2L_19892637_SNP [dm3] 2L_19892637_SNP [dm6]	G	T	4.687e^-5	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	13256685	2R_13256685_SNP [dm3] 2R_17369180_SNP [dm6]	C	T	4.752e^-5	0.991	INTRON mbl
2R	6942960	2R_6942960_SNP [dm3] 2R_11055455_SNP [dm6]	C	G	4.775e^-5	0.991	INTRON luna
2R	11214298	2R_11214298_SNP [dm3] 2R_15326793_SNP [dm6]	T	G	4.831e^-5	0.991	UPSTREAM CG8157 DOWNSTREAM CG8160 INTERGENIC
2L	12014183	2L_12014183_SNP [dm3] 2L_12014183_SNP [dm6]	G	C	4.853e^-5	0.991	DOWNSTREAM CG6734 & 1 other INTERGENIC
3L	11552492	3L_11552492_SNP [dm3] 3L_11559392_SNP [dm6]	C	T	4.926e^-5	0.991	UPSTREAM Mob2 INTRON Mob2
3R	22814484	3R_22814484_SNP [dm3] 3R_26988762_SNP [dm6]	T	A	4.972e^-5	0.991	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	18605756	2L_18605756_SNP [dm3] 2L_18605756_SNP [dm6]	G	T	5.042e^-5	0.991	UPSTREAM CG31789 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26297598	3R_26297598_SNP [dm3] 3R_30471876_SNP [dm6]	G	A	5.076e^-5	0.991	INTRON PH4alphaEFB
2L	3350711	2L_3350711_SNP [dm3] 2L_3350711_SNP [dm6]	A	G	5.122e^-5	0.991	INTRON E23
3L	7768214	3L_7768214_SNP [dm3] 3L_7775114_SNP [dm6]	T	A	5.142e^-5	0.991	INTRON Clk	regulatory region REDfly_CRMs
3L	11015727	3L_11015727_SNP [dm3] 3L_11022627_SNP [dm6]	G	C	5.266e^-5	0.991	UPSTREAM Fad2 INTERGENIC	TF binding site mE1_TFBS_cad
2L	18581339	2L_18581339_SNP [dm3] 2L_18581339_SNP [dm6]	C	A	5.474e^-5	0.991	INTRON Pde11
3R	26051090	3R_26051090_SNP [dm3] 3R_30225368_SNP [dm6]	C	T	5.605e^-5	0.991	INTERGENIC
2L	18589851	2L_18589851_SNP [dm3] 2L_18589851_SNP [dm6]	G	T	5.608e^-5	0.991	INTRON Pde11	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	11552369	3L_11552369_SNP [dm3] 3L_11559269_SNP [dm6]	C	A	5.639e^-5	0.991	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
3R	14027591	3R_14027591_SNP [dm3] 3R_18201869_SNP [dm6]	C	T	5.680e^-5	0.991	INTRON CG7985
3L	11555691	3L_11555691_SNP [dm3] 3L_11562591_SNP [dm6]	A	C	5.688e^-5	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	15274757	3L_15274757_SNP [dm3] 3L_15281657_SNP [dm6]	C	G	5.719e^-5	0.991	INTERGENIC
3L	11552495	3L_11552495_SNP [dm3] 3L_11559395_SNP [dm6]	A	T	5.743e^-5	0.991	UPSTREAM Mob2 INTRON Mob2
3R	14064730	3R_14064730_SNP [dm3] 3R_18239008_SNP [dm6]	C	G	5.849e^-5	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
2L	17456733	2L_17456733_SNP [dm3] 2L_17456733_SNP [dm6]	T	A	5.873e^-5	0.991	UTR_3_PRIME CG18563 UPSTREAM CG6639 INTRON CG5050	TF binding site mE1_TFBS_cad
2R	10267522	2R_10267522_SNP [dm3] 2R_14380017_SNP [dm6]	T	C	5.881e^-5	0.991	INTRON Dh44-R1
3L	1726836	3L_1726836_SNP [dm3] 3L_1726836_SNP [dm6]	G	T	5.987e^-5	0.991	INTRON drpr
2R	2490068	2R_2490068_SNP [dm3] 2R_6602563_SNP [dm6]	T	C	6.099e^-5	0.991	INTRON jing	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26088349	3R_26088349_SNP [dm3] 3R_30262627_SNP [dm6]	A	T	6.147e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_Kr
2L	2025107	2L_2025107_SNP [dm3] 2L_2025107_SNP [dm6]	A	C	6.148e^-5	0.991	INTRON CG4238
2R	7274382	2R_7274382_SNP [dm3] 2R_11386877_SNP [dm6]	A	G	6.252e^-5	0.991	SYNONYMOUS_CODING sprt DOWNSTREAM CG30022	TF binding site mE1_TFBS_cad
2R	2397606	2R_2397606_SNP [dm3] 2R_6510101_SNP [dm6]	A	G	6.287e^-5	0.991	INTRON jing EXON CR45127
2R	20052855	2R_20052855_SNP [dm3] 2R_24165332_SNP [dm6]	T	C	6.412e^-5	0.991	INTRON CG3328
X	4908174	X_4908174_SNP [dm3] X_5014141_SNP [dm6]	T	A	6.445e^-5	0.991	INTRON CR44833
3L	18284180	3L_18284180_SNP [dm3] 3L_18291080_SNP [dm6]	C	T	6.532e^-5	0.991	INTERGENIC
3L	7945586	3L_7945586_INS [dm3] 3L_7952486_INS [dm6]	C	CT	6.602e^-5	0.991	DOWNSTREAM exex INTERGENIC	TF binding site mE1_TFBS_cad
3R	24667581	3R_24667581_SNP [dm3] 3R_28841859_SNP [dm6]	T	C	6.928e^-5	0.991	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11555462	3L_11555462_SNP [dm3] 3L_11562362_SNP [dm6]	A	T	7.046e^-5	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	27425647	3R_27425647_SNP [dm3] 3R_31599925_SNP [dm6]	T	C	7.068e^-5	0.991	INTRON CycG	TF binding site mE1_TFBS_cad
3R	14064686	3R_14064686_SNP [dm3] 3R_18238964_SNP [dm6]	A	T	7.107e^-5	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
2L	18592194	2L_18592194_SNP [dm3] 2L_18592194_SNP [dm6]	C	T	7.173e^-5	0.991	SYNONYMOUS_CODING CG15160	TF binding site mE1_TFBS_sens
2L	19892711	2L_19892711_SNP [dm3] 2L_19892711_SNP [dm6]	C	T	7.222e^-5	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	6542832	3R_6542832_SNP [dm3] 3R_10717110_SNP [dm6]	T	C	7.333e^-5	0.991	INTERGENIC
2L	4221349	2L_4221349_DEL [dm3] 2L_4221349_DEL [dm6]	CCAC	C	7.338e^-5	0.991	UTR_5_PRIME ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	8023571	3L_8023571_SNP [dm3] 3L_8030471_SNP [dm6]	A	C	7.428e^-5	0.991	INTRON nmo
3R	6542833	3R_6542833_DEL [dm3] 3R_10717111_DEL [dm6]	CT	C	7.428e^-5	0.991	INTERGENIC
2R	15687746	2R_15687746_SNP [dm3] 2R_19800241_SNP [dm6]	T	C	7.446e^-5	0.991	INTERGENIC
2L	18580605	2L_18580605_SNP [dm3] 2L_18580605_SNP [dm6]	C	A	7.510e^-5	0.991	INTRON Pde11
2R	15577358	2R_15577358_SNP [dm3] 2R_19689853_SNP [dm6]	G	A	7.559e^-5	0.991	UPSTREAM CG15126 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	12492928	2L_12492928_SNP [dm3] 2L_12492928_SNP [dm6]	G	A	7.584e^-5	0.991	UPSTREAM bun INTRON bun
3R	14131742	3R_14131742_SNP [dm3] 3R_18306020_SNP [dm6]	C	T	7.644e^-5	0.991	DOWNSTREAM PKD INTRON PKD	TF binding site mE1_TFBS_cad
3R	1983774	3R_1983774_SNP [dm3] 3R_6158052_SNP [dm6]	C	T	7.737e^-5	0.991	UPSTREAM CG31559 INTERGENIC
3L	11446625	3L_11446625_SNP [dm3] 3L_11453525_SNP [dm6]	T	G	7.886e^-5	0.991	INTERGENIC
3L	11466202	3L_11466202_SNP [dm3] 3L_11473102_SNP [dm6]	T	A	7.905e^-5	0.991	UPSTREAM Vha16-3 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	11555455	3L_11555455_DEL [dm3] 3L_11562355_DEL [dm6]	TA	T	8.080e^-5	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555460	3L_11555460_SNP [dm3] 3L_11562360_SNP [dm6]	A	T	8.100e^-5	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2R	15963733	2R_15963733_SNP [dm3] 2R_20076228_SNP [dm6]	T	C	8.147e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_inv
2L	7558896	2L_7558896_SNP [dm3] 2L_7558896_SNP [dm6]	A	C	8.351e^-5	0.991	INTRON RapGAP1
2R	6942963	2R_6942963_SNP [dm3] 2R_11055458_SNP [dm6]	G	T	8.457e^-5	0.991	INTRON luna
2R	4208830	2R_4208830_SNP [dm3] 2R_8321325_SNP [dm6]	A	G	8.474e^-5	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	1285468	2L_1285468_SNP [dm3] 2L_1285468_SNP [dm6]	T	G	8.596e^-5	0.991	INTRON robo3
3L	11555481	3L_11555481_SNP [dm3] 3L_11562381_SNP [dm6]	T	C	8.640e^-5	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	26280234	3R_26280234_SNP [dm3] 3R_30454512_SNP [dm6]	T	C	8.694e^-5	0.991	UPSTREAM aralar1 INTRON aralar1
2L	14694945	2L_14694945_SNP [dm3] 2L_14694945_SNP [dm6]	C	G	8.976e^-5	0.991	INTERGENIC
3L	5485769	3L_5485769_SNP [dm3] 3L_5492669_SNP [dm6]	A	T	8.997e^-5	0.991	DOWNSTREAM CR44520 INTERGENIC
3L	11543564	3L_11543564_SNP [dm3] 3L_11550464_SNP [dm6]	C	T	9.002e^-5	0.991	INTRON Mob2	TF binding site mE1_TFBS_Trl
3L	11553543	3L_11553543_SNP [dm3] 3L_11560443_SNP [dm6]	C	T	9.418e^-5	0.991	INTRON Mob2
3R	1890636	3R_1890636_SNP [dm3] 3R_6064914_SNP [dm6]	A	G	9.429e^-5	0.991	INTERGENIC
2R	7022038	2R_7022038_SNP [dm3] 2R_11134533_SNP [dm6]	A	G	9.568e^-5	0.991	INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
3R	19362046	3R_19362046_SNP [dm3] 3R_23536324_SNP [dm6]	A	T	9.587e^-5	0.991	SYNONYMOUS_CODING CG16732 DOWNSTREAM CG10168
3R	11280962	3R_11280962_SNP [dm3] 3R_15455240_SNP [dm6]	A	C	9.593e^-5	0.991	INTRON AdamTS-A
3R	12174220	3R_12174220_DEL [dm3] 3R_16348498_DEL [dm6]	GA	G	9.819e^-5	0.991	UPSTREAM Manf INTRON CG14879	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	12995100	2L_12995100_SNP [dm3] 2L_12995100_SNP [dm6]	A	C	9.843e^-5	0.991	INTRON CG12404
X	5790831	X_5790831_SNP [dm3] X_5896798_SNP [dm6]	C	T	9.851e^-5	0.991	INTRON CR45668	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	7554985	2L_7554985_SNP [dm3] 2L_7554985_SNP [dm6]	T	A	9.860e^-5	0.991	INTRON RapGAP1
3L	12245658	3L_12245658_SNP [dm3] 3L_12252558_SNP [dm6]	C	T	9.951e^-5	0.991	INTRON app
3R	12554845	3R_12554845_DEL [dm3] 3R_16729123_DEL [dm6]	GACGTCG	G	9.952e^-5	0.991	INTRON Ubx	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	4604096	X_4604096_SNP [dm3] X_4710063_SNP [dm6]	T	C	1.008e^-4	0.991	INTRON Proc-R
3L	19274421	3L_19274421_SNP [dm3] 3L_19281321_SNP [dm6]	C	A	1.010e^-4	0.991	UPSTREAM CG14089 DOWNSTREAM Gbs-76A INTERGENIC
3L	13641902	3L_13641902_INS [dm3] 3L_13648802_INS [dm6]	T	TT	1.011e^-4	0.991	INTRON bru-3
3R	10572668	3R_10572668_SNP [dm3] 3R_14746946_SNP [dm6]	C	G	1.025e^-4	0.991	SYNONYMOUS_CODING smp-30 INTRON jvl	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad
3L	11547956	3L_11547956_SNP [dm3] 3L_11554856_SNP [dm6]	C	A	1.030e^-4	0.991	INTRON Mob2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	12952139	3R_12952139_SNP [dm3] 3R_17126417_SNP [dm6]	G	T	1.042e^-4	0.991	NON_SYNONYMOUS_CODING CG17477 UPSTREAM CG31269 DOWNSTREAM CR44238	TF binding site mE1_TFBS_inv
3L	7851406	3L_7851406_DEL [dm3] 3L_7858306_DEL [dm6]	TATGTACATATATCC...	T	1.045e^-4	0.991	INTRON Pdp1	TF binding site mE1_TFBS_HSA
3R	8890184	3R_8890184_DEL [dm3] 3R_13064462_DEL [dm6]	TGTGT	A	1.047e^-4	0.991	INTRON sim	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3R	13948487	3R_13948487_DEL [dm3] 3R_18122765_DEL [dm6]	AA	A	1.048e^-4	0.991	INTRON sr	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	9908791	3L_9908791_SNP [dm3] 3L_9915691_SNP [dm6]	A	G	1.048e^-4	0.991	INTRON CG34356	TF binding site mE1_TFBS_inv
3R	8691523	3R_8691523_INS [dm3] 3R_12865801_INS [dm6]	T	TT	1.056e^-4	0.991	INTERGENIC
2L	2697489	2L_2697489_SNP [dm3] 2L_2697489_SNP [dm6]	C	G	1.058e^-4	0.991	INTRON CG31690
3L	5485885	3L_5485885_SNP [dm3] 3L_5492785_SNP [dm6]	C	T	1.066e^-4	0.991	DOWNSTREAM CR44520 INTERGENIC
3L	7532733	3L_7532733_SNP [dm3] 3L_7539633_SNP [dm6]	C	G	1.070e^-4	0.991	NON_SYNONYMOUS_CODING CG16998 UTR_3_PRIME lqf DOWNSTREAM CG32374
X	290512	X_290512_SNP [dm3] X_396479_SNP [dm6]	C	T	1.075e^-4	0.991	SYNONYMOUS_CODING sc INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3L	9517424	3L_9517424_SNP [dm3] 3L_9524324_SNP [dm6]	A	C	1.084e^-4	0.991	INTRON CG33700
2R	4787287	2R_4787287_SNP [dm3] 2R_8899782_SNP [dm6]	C	T	1.086e^-4	0.991	SYNONYMOUS_CODING ana2 UPSTREAM CG13751 DOWNSTREAM Sec31 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	6309683	3L_6309683_SNP [dm3] 3L_6316583_SNP [dm6]	C	T	1.092e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_twi
3L	11553537	3L_11553537_SNP [dm3] 3L_11560437_SNP [dm6]	G	A	1.118e^-4	0.991	INTRON Mob2
3L	19274423	3L_19274423_SNP [dm3] 3L_19281323_SNP [dm6]	G	T	1.122e^-4	0.991	UPSTREAM CG14089 DOWNSTREAM Gbs-76A INTERGENIC
3L	7768172	3L_7768172_SNP [dm3] 3L_7775072_SNP [dm6]	C	A	1.122e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
3L	8025199	3L_8025199_SNP [dm3] 3L_8032099_SNP [dm6]	C	A	1.129e^-4	0.991	INTRON nmo
2L	12583648	2L_12583648_SNP [dm3] 2L_12583648_SNP [dm6]	T	G	1.131e^-4	0.991	DOWNSTREAM CR44596 & 1 other INTERGENIC
2L	7761795	2L_7761795_SNP [dm3] 2L_7761795_SNP [dm6]	T	C	1.132e^-4	0.991	INTRON CG7196
3L	7768213	3L_7768213_SNP [dm3] 3L_7775113_SNP [dm6]	A	T	1.134e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
3L	7565732	3L_7565732_SNP [dm3] 3L_7572632_SNP [dm6]	C	A	1.161e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	18599185	3R_18599185_SNP [dm3] 3R_22773463_SNP [dm6]	C	T	1.162e^-4	0.991	UPSTREAM mir-4953 INTRON Usp12-46 & 1 other
2R	6282846	2R_6282846_SNP [dm3] 2R_10395341_SNP [dm6]	C	T	1.174e^-4	0.991	UPSTREAM CG42732 INTRON CG42732
3R	14064780	3R_14064780_SNP [dm3] 3R_18239058_SNP [dm6]	A	C	1.183e^-4	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	7773222	3L_7773222_SNP [dm3] 3L_7780122_SNP [dm6]	G	A	1.196e^-4	0.991	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
3R	5695063	3R_5695063_SNP [dm3] 3R_9869341_SNP [dm6]	A	T	1.198e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cnc mE1_TFBS_ttk
3R	26078042	3R_26078042_SNP [dm3] 3R_30252320_SNP [dm6]	T	C	1.209e^-4	0.991	SYNONYMOUS_CODING CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6259256	2R_6259256_SNP [dm3] 2R_10371751_SNP [dm6]	G	T	1.216e^-4	0.991	INTRON CG42732
2L	12304923	2L_12304923_SNP [dm3] 2L_12304923_SNP [dm6]	G	A	1.216e^-4	0.991	INTRON aret
2L	19892749	2L_19892749_SNP [dm3] 2L_19892749_SNP [dm6]	G	C	1.217e^-4	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	16998788	2L_16998788_SNP [dm3] 2L_16998788_SNP [dm6]	C	A	1.224e^-4	0.991	DOWNSTREAM CR45356 EXON CR45357
3L	2426604	3L_2426604_SNP [dm3] 3L_2426604_SNP [dm6]	G	A	1.230e^-4	0.991	INTRON CG45186
X	16606212	X_16606212_SNP [dm3] X_16712179_SNP [dm6]	C	T	1.242e^-4	0.991	SYNONYMOUS_CODING CG13008	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	8720259	2R_8720259_SNP [dm3] 2R_12832754_SNP [dm6]	A	C	1.250e^-4	0.991	INTERGENIC
2R	4112709	2R_4112709_DEL [dm3] 2R_8225204_DEL [dm6]	TTCTACATATAGG...	T	1.257e^-4	0.991	INTRON LRP1
3R	9988486	3R_9988486_SNP [dm3] 3R_14162764_SNP [dm6]	G	A	1.258e^-4	0.991	UTR_5_PRIME CG3199
2R	8932074	2R_8932074_SNP [dm3] 2R_13044569_SNP [dm6]	A	T	1.262e^-4	0.991	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	11555467	3L_11555467_SNP [dm3] 3L_11562367_SNP [dm6]	T	A	1.268e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3R	20314461	3R_20314461_SNP [dm3] 3R_24488739_SNP [dm6]	T	A	1.273e^-4	0.991	DOWNSTREAM mir-1017 INTRON nAChRalpha2
X	4849812	X_4849812_SNP [dm3] X_4955779_SNP [dm6]	A	C	1.279e^-4	0.991	UTR_3_PRIME Ptp4E DOWNSTREAM Ptp4E & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_kn
3L	11555532	3L_11555532_SNP [dm3] 3L_11562432_SNP [dm6]	T	C	1.279e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	11109554	3R_11109554_INS [dm3] 3R_15283832_INS [dm6]	GG	TCAATTACCAA...	1.284e^-4	0.991	INTRON Tm1
2L	18932769	2L_18932769_SNP [dm3] 2L_18932769_SNP [dm6]	A	G	1.287e^-4	0.991	INTRON ssp3
2R	8849470	2R_8849470_SNP [dm3] 2R_12961965_SNP [dm6]	T	G	1.292e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_D mE1_TFBS_HSA
3R	14561879	3R_14561879_SNP [dm3] 3R_18736157_SNP [dm6]	C	T	1.302e^-4	0.991	SYNONYMOUS_CODING Mekk1	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	3433614	X_3433614_SNP [dm3] X_3539581_SNP [dm6]	A	G	1.312e^-4	0.991	INTRON CG32791
3L	2425489	3L_2425489_SNP [dm3] 3L_2425489_SNP [dm6]	T	G	1.323e^-4	0.991	INTRON CG45186	TF binding site mE1_TFBS_bab1
2R	4529075	2R_4529075_SNP [dm3] 2R_8641570_SNP [dm6]	A	G	1.326e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_eve mE1_TFBS_HSA
2L	9731805	2L_9731805_SNP [dm3] 2L_9731805_SNP [dm6]	A	T	1.331e^-4	0.991	DOWNSTREAM CG13116 INTRON Nckx30C	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA
2R	13256629	2R_13256629_SNP [dm3] 2R_17369124_SNP [dm6]	T	A	1.333e^-4	0.991	INTRON mbl	TF binding site BDTNP1_TFBS_dl
X	19426759	X_19426759_SNP [dm3] X_19532726_SNP [dm6]	C	G	1.342e^-4	0.991	UTR_3_PRIME CG32532 UPSTREAM CG12231
3L	10934131	3L_10934131_SNP [dm3] 3L_10941031_SNP [dm6]	T	C	1.345e^-4	0.991	INTERGENIC
2R	12366379	2R_12366379_SNP [dm3] 2R_16478874_SNP [dm6]	T	C	1.346e^-4	0.991	INTERGENIC
3L	4796160	3L_4796160_SNP [dm3] 3L_4796160_SNP [dm6]	T	C	1.361e^-4	0.991	UTR_3_PRIME RhoGEF64C
2R	15687548	2R_15687548_SNP [dm3] 2R_19800043_SNP [dm6]	C	G	1.373e^-4	0.991	INTERGENIC
2L	6097885	2L_6097885_SNP [dm3] 2L_6097885_SNP [dm6]	C	A	1.374e^-4	0.991	NON_SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	8454869	3L_8454869_INS [dm3] 3L_8461769_INS [dm6]	A	AT	1.396e^-4	0.991	INTRON Gug	TF binding site BDTNP1_TFBS_dl
3R	4074960	3R_4074960_SNP [dm3] 3R_8249238_SNP [dm6]	T	C	1.411e^-4	0.991	NON_SYNONYMOUS_CODING CG15864
3L	11555549	3L_11555549_SNP [dm3] 3L_11562449_SNP [dm6]	T	C	1.413e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2R	18762764	2R_18762764_SNP [dm3] 2R_22875241_SNP [dm6]	C	T	1.425e^-4	0.991	UPSTREAM CR45469 DOWNSTREAM CG13532 INTRON PIP5K59B	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	17847493	2R_17847493_SNP [dm3] 2R_21959988_SNP [dm6]	T	G	1.436e^-4	0.991	INTERGENIC
3L	13485286	3L_13485286_SNP [dm3] 3L_13492186_SNP [dm6]	G	C	1.437e^-4	0.991	INTRON Tgi
2L	1577458	2L_1577458_SNP [dm3] 2L_1577458_SNP [dm6]	T	C	1.438e^-4	0.991	INTRON haf
2L	18588848	2L_18588848_SNP [dm3] 2L_18588848_SNP [dm6]	T	C	1.445e^-4	0.991	INTRON Pde11
3R	26157287	3R_26157287_SNP [dm3] 3R_30331565_SNP [dm6]	G	C	1.460e^-4	0.991	INTRON hdc
2L	6007283	2L_6007283_SNP [dm3] 2L_6007283_SNP [dm6]	A	G	1.467e^-4	0.991	UPSTREAM Gal DOWNSTREAM CR43866 & 1 other INTERGENIC
2L	7554532	2L_7554532_SNP [dm3] 2L_7554532_SNP [dm6]	C	T	1.468e^-4	0.991	INTRON RapGAP1
X	18966051	X_18966051_INS [dm3] X_19072018_INS [dm6]	C	CATGTGCTCCATTTAAAGCT...	1.495e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_chinmo
3R	25491116	3R_25491116_SNP [dm3] 3R_29665394_SNP [dm6]	G	A	1.495e^-4	0.991	NON_SYNONYMOUS_CODING ppk21	TF binding site mE1_TFBS_sens
2R	9236177	2R_9236177_SNP [dm3] 2R_13348672_SNP [dm6]	A	T	1.499e^-4	0.991	INTRON CR44206
3L	7704172	3L_7704172_SNP [dm3] 3L_7711072_SNP [dm6]	T	C	1.501e^-4	0.991	INTRON CG32373 & 1 other
3L	7755961	3L_7755961_SNP [dm3] 3L_7762861_SNP [dm6]	T	A	1.505e^-4	0.991	DOWNSTREAM Clk INTRON Hn
3R	18467089	3R_18467089_SNP [dm3] 3R_22641367_SNP [dm6]	C	A	1.509e^-4	0.991	INTRON CG45058	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3R	26157224	3R_26157224_SNP [dm3] 3R_30331502_SNP [dm6]	C	T	1.513e^-4	0.991	INTRON hdc
2L	7559213	2L_7559213_SNP [dm3] 2L_7559213_SNP [dm6]	C	A	1.517e^-4	0.991	INTRON RapGAP1
3R	8822610	3R_8822610_SNP [dm3] 3R_12996888_SNP [dm6]	T	C	1.545e^-4	0.991	UTR_3_PRIME CG7488 & 2 others	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	7948070	3L_7948070_SNP [dm3] 3L_7954970_SNP [dm6]	T	G	1.549e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3R	26542652	3R_26542652_SNP [dm3] 3R_30716930_SNP [dm6]	C	T	1.550e^-4	0.991	INTERGENIC
2L	7875907	2L_7875907_SNP [dm3] 2L_7875907_SNP [dm6]	T	A	1.555e^-4	0.991	INTRON spz3
2L	19892592	2L_19892592_SNP [dm3] 2L_19892592_SNP [dm6]	A	T	1.564e^-4	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16918463	X_16918463_SNP [dm3] X_17024430_SNP [dm6]	T	C	1.599e^-4	0.991	DOWNSTREAM CG43997 INTRON CG45002
3R	25120785	3R_25120785_SNP [dm3] 3R_29295063_SNP [dm6]	G	T	1.605e^-4	0.991	UTR_3_PRIME CG14506 DOWNSTREAM CG14506	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	21809694	3R_21809694_SNP [dm3] 3R_25983972_SNP [dm6]	G	A	1.614e^-4	0.991	SYNONYMOUS_CODING Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
3R	26044081	3R_26044081_SNP [dm3] 3R_30218359_SNP [dm6]	C	T	1.616e^-4	0.991	INTERGENIC
3L	11829018	3L_11829018_SNP [dm3] 3L_11835918_SNP [dm6]	G	A	1.625e^-4	0.991	NON_SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
X	13629130	X_13629130_SNP [dm3] X_13735097_SNP [dm6]	G	T	1.640e^-4	0.991	INTRON g
2R	9137625	2R_9137625_SNP [dm3] 2R_13250120_SNP [dm6]	G	A	1.641e^-4	0.991	SYNONYMOUS_CODING CG4712
2L	18573344	2L_18573344_SNP [dm3] 2L_18573344_SNP [dm6]	T	G	1.645e^-4	0.991	INTRON Pde11
3R	26078045	3R_26078045_INS [dm3] 3R_30252323_INS [dm6]	T	TGGAAATGCGGCC...	1.646e^-4	0.991	CODON_INSERTION CG9682 UPSTREAM CG18404	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	6097909	2L_6097909_SNP [dm3] 2L_6097909_SNP [dm6]	G	A	1.658e^-4	0.991	SYNONYMOUS_CODING CG9175	TF binding site BDTNP1_TFBS_ftz mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	7733245	3L_7733245_SNP [dm3] 3L_7740145_SNP [dm6]	G	A	1.658e^-4	0.991	INTRON CG32373 & 1 other
3L	7943797	3L_7943797_SNP [dm3] 3L_7950697_SNP [dm6]	G	C	1.663e^-4	0.991	SYNONYMOUS_CODING exex
2L	1577402	2L_1577402_SNP [dm3] 2L_1577402_SNP [dm6]	T	C	1.664e^-4	0.991	INTRON haf
2R	7021599	2R_7021599_SNP [dm3] 2R_11134094_SNP [dm6]	C	T	1.670e^-4	0.991	INTERGENIC
3R	17002705	3R_17002705_SNP [dm3] 3R_21176983_SNP [dm6]	G	A	1.673e^-4	0.991	INTRON SNF4Agamma
2L	6622011	2L_6622011_SNP [dm3] 2L_6622011_SNP [dm6]	A	T	1.687e^-4	0.991	UPSTREAM CG11320 INTERGENIC	TF binding site mE1_TFBS_bab1
2R	13801109	2R_13801109_SNP [dm3] 2R_17913604_SNP [dm6]	T	C	1.693e^-4	0.991	INTRON Elk
2L	3628744	2L_3628744_SNP [dm3] 2L_3628744_SNP [dm6]	T	A	1.707e^-4	0.991	INTRON for	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	17847469	2R_17847469_SNP [dm3] 2R_21959964_SNP [dm6]	G	T	1.721e^-4	0.991	INTERGENIC
3L	8023806	3L_8023806_SNP [dm3] 3L_8030706_SNP [dm6]	A	C	1.721e^-4	0.991	INTRON nmo
3R	26279123	3R_26279123_SNP [dm3] 3R_30453401_SNP [dm6]	C	T	1.758e^-4	0.991	INTRON aralar1
2L	3325923	2L_3325923_SNP [dm3] 2L_3325923_SNP [dm6]	C	T	1.767e^-4	0.991	SYNONYMOUS_CODING CG33281
X	5887873	X_5887873_SNP [dm3] X_5993840_SNP [dm6]	A	T	1.774e^-4	0.991	INTERGENIC
X	16773800	X_16773800_INS [dm3] X_16879767_INS [dm6]	TG	CAAAA	1.782e^-4	0.991	INTERGENIC
3L	8031406	3L_8031406_SNP [dm3] 3L_8038306_SNP [dm6]	T	A	1.795e^-4	0.991	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
3L	20550747	3L_20550747_SNP [dm3] 3L_20557647_SNP [dm6]	T	C	1.797e^-4	0.991	INTERGENIC
3R	25497120	3R_25497120_SNP [dm3] 3R_29671398_SNP [dm6]	G	C	1.803e^-4	0.991	UTR_3_PRIME ppk30 UPSTREAM Obp99a DOWNSTREAM ppk30	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7768178	3L_7768178_SNP [dm3] 3L_7775078_SNP [dm6]	A	T	1.803e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
2L	3002522	2L_3002522_SNP [dm3] 2L_3002522_SNP [dm6]	A	G	1.806e^-4	0.991	INTRON CG17265
X	18085322	X_18085322_SNP [dm3] X_18191289_SNP [dm6]	G	A	1.807e^-4	0.991	INTRON Frq2
2L	8449926	2L_8449926_SNP [dm3] 2L_8449926_SNP [dm6]	C	T	1.810e^-4	0.991	UTR_3_PRIME fu12 UPSTREAM U26
2L	7690847	2L_7690847_SNP [dm3] 2L_7690847_SNP [dm6]	C	T	1.810e^-4	0.991	DOWNSTREAM CG7025 INTRON CG18585	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22814530	3R_22814530_SNP [dm3] 3R_26988808_SNP [dm6]	T	A	1.813e^-4	0.991	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
3L	14619158	3L_14619158_SNP [dm3] 3L_14626058_SNP [dm6]	T	A	1.815e^-4	0.991	INTRON CG9628	TF binding site mE1_TFBS_hkb
X	2384902	X_2384902_SNP [dm3] X_2490869_SNP [dm6]	A	G	1.816e^-4	0.991	INTRON trol	TF binding site BDTNP1_TFBS_twi
X	3433300	X_3433300_SNP [dm3] X_3539267_SNP [dm6]	A	G	1.825e^-4	0.991	INTRON CG32791
2L	12014252	2L_12014252_SNP [dm3] 2L_12014252_SNP [dm6]	C	T	1.827e^-4	0.991	DOWNSTREAM CG6734 & 1 other INTERGENIC
3R	26072301	3R_26072301_SNP [dm3] 3R_30246579_SNP [dm6]	G	A	1.827e^-4	0.991	NON_SYNONYMOUS_CODING CG9733
2R	16062092	2R_16062092_SNP [dm3] 2R_20174587_SNP [dm6]	A	T	1.833e^-4	0.991	INTERGENIC
2L	19250089	2L_19250089_SNP [dm3] 2L_19250089_SNP [dm6]	C	T	1.838e^-4	0.991	INTERGENIC
2L	7551534	2L_7551534_SNP [dm3] 2L_7551534_SNP [dm6]	A	G	1.845e^-4	0.991	INTRON RapGAP1
2R	6923974	2R_6923974_SNP [dm3] 2R_11036469_SNP [dm6]	A	G	1.847e^-4	0.991	INTRON luna
2L	16841042	2L_16841042_SNP [dm3] 2L_16841042_SNP [dm6]	T	G	1.848e^-4	0.991	INTRON SclA & 1 other
2L	18586030	2L_18586030_DEL [dm3] 2L_18586030_DEL [dm6]	CC	C	1.880e^-4	0.991	INTRON Pde11
3R	26214882	3R_26214882_SNP [dm3] 3R_30389160_SNP [dm6]	C	T	1.891e^-4	0.991	UTR_5_PRIME Fer2LCH UPSTREAM Fer1HCH INTRON Fer2LCH	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_kn mE1_TFBS_Trl
3L	11552499	3L_11552499_SNP [dm3] 3L_11559399_SNP [dm6]	G	A	1.902e^-4	0.991	UPSTREAM Mob2 INTRON Mob2
3L	7946522	3L_7946522_INS [dm3] 3L_7953422_INS [dm6]	T	TT	1.917e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3R	26289925	3R_26289925_SNP [dm3] 3R_30464203_SNP [dm6]	G	A	1.920e^-4	0.991	SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo
3L	5877996	3L_5877996_SNP [dm3] 3L_5884896_SNP [dm6]	C	T	1.930e^-4	0.991	DOWNSTREAM CG13287 INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
2R	7709210	2R_7709210_SNP [dm3] 2R_11821705_SNP [dm6]	A	G	1.935e^-4	0.991	INTERGENIC
X	16810885	X_16810885_SNP [dm3] X_16916852_SNP [dm6]	A	G	1.940e^-4	0.991	INTRON CG4928	TF binding site mE1_TFBS_HSA mE1_TFBS_kn
2L	1205810	2L_1205810_SNP [dm3] 2L_1205810_SNP [dm6]	G	A	1.951e^-4	0.991	DOWNSTREAM CG14342 INTERGENIC
2R	7045274	2R_7045274_SNP [dm3] 2R_11157769_SNP [dm6]	T	C	1.952e^-4	0.991	INTRON CG13229
3L	2023962	3L_2023962_SNP [dm3] 3L_2023962_SNP [dm6]	A	G	1.954e^-4	0.991	UPSTREAM CG42356 INTERGENIC
2L	1384780	2L_1384780_SNP [dm3] 2L_1384780_SNP [dm6]	T	C	2.005e^-4	0.991	INTRON lea
3R	2959004	3R_2959004_SNP [dm3] 3R_7133282_SNP [dm6]	A	C	2.013e^-4	0.991	DOWNSTREAM CG31493 INTERGENIC
2L	7560513	2L_7560513_SNP [dm3] 2L_7560513_SNP [dm6]	C	T	2.027e^-4	0.991	INTRON RapGAP1
3R	9489241	3R_9489241_SNP [dm3] 3R_13663519_SNP [dm6]	G	T	2.037e^-4	0.991	UTR_3_PRIME B52 INTRON B52
2R	2683863	2R_2683863_SNP [dm3] 2R_6796358_SNP [dm6]	C	T	2.039e^-4	0.991	INTRON Epac
3L	12357958	3L_12357958_SNP [dm3] 3L_12364858_SNP [dm6]	T	G	2.042e^-4	0.991	INTERGENIC
3R	21291614	3R_21291614_SNP [dm3] 3R_25465892_SNP [dm6]	T	A	2.045e^-4	0.991	INTRON Fur1
3R	7675583	3R_7675583_INS [dm3] 3R_11849861_INS [dm6]	G	GAAG	2.049e^-4	0.991	INTRON CG6959
2L	7558200	2L_7558200_SNP [dm3] 2L_7558200_SNP [dm6]	T	C	2.050e^-4	0.991	INTRON RapGAP1
3R	26297607	3R_26297607_SNP [dm3] 3R_30471885_SNP [dm6]	T	G	2.056e^-4	0.991	INTRON PH4alphaEFB
2R	11314491	2R_11314491_SNP [dm3] 2R_15426986_SNP [dm6]	A	G	2.057e^-4	0.991	DOWNSTREAM CG34188 INTRON CG43729
2L	4221323	2L_4221323_INS [dm3] 2L_4221323_INS [dm6]	C	CAGAC	2.058e^-4	0.991	UTR_5_PRIME ft	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	15630705	2L_15630705_SNP [dm3] 2L_15630705_SNP [dm6]	A	T	2.063e^-4	0.991	SYNONYMOUS_CODING CG18480
3L	11550510	3L_11550510_SNP [dm3] 3L_11557410_SNP [dm6]	T	C	2.063e^-4	0.991	INTRON Mob2	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2R	6295018	2R_6295018_SNP [dm3] 2R_10407513_SNP [dm6]	C	T	2.064e^-4	0.991	UPSTREAM CG12898 INTRON CG42732
3R	18189899	3R_18189899_DEL [dm3] 3R_22364177_DEL [dm6]	CTTCTTC	C	2.065e^-4	0.991	DOWNSTREAM CG5382 INTRON CG7071 & 1 other	TF binding site mE1_TFBS_sens
X	19996585	X_19996585_SNP [dm3] X_20102552_SNP [dm6]	A	T	2.077e^-4	0.991	INTERGENIC	transposable element FlyBase
X	22231752	X_22231752_SNP [dm3] X_22829916_SNP [dm6]	G	A	2.078e^-4	0.991	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	21089588	3L_21089588_SNP [dm3] 3L_21096488_SNP [dm6]	G	T	2.080e^-4	0.991	INTRON ko
2R	13255601	2R_13255601_SNP [dm3] 2R_17368096_SNP [dm6]	A	G	2.080e^-4	0.991	INTRON mbl
2R	6295489	2R_6295489_SNP [dm3] 2R_10407984_SNP [dm6]	A	G	2.093e^-4	0.991	UPSTREAM CG12898 DOWNSTREAM CG43177 INTRON CG42732
X	11661873	X_11661873_SNP [dm3] X_11767840_SNP [dm6]	T	C	2.093e^-4	0.991	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2R	7387910	2R_7387910_SNP [dm3] 2R_11500405_SNP [dm6]	C	G	2.103e^-4	0.991	INTRON inv
3R	26276417	3R_26276417_DEL [dm3] 3R_30450695_DEL [dm6]	AA	C	2.116e^-4	0.991	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	7776009	3L_7776009_SNP [dm3] 3L_7782909_SNP [dm6]	C	T	2.123e^-4	0.991	INTRON CG32369
2R	2683849	2R_2683849_SNP [dm3] 2R_6796344_SNP [dm6]	T	A	2.135e^-4	0.991	INTRON Epac
X	20706893	X_20706893_SNP [dm3] X_20835866_SNP [dm6]	A	T	2.136e^-4	0.991	INTRON shakB
3L	7767842	3L_7767842_SNP [dm3] 3L_7774742_SNP [dm6]	C	T	2.139e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
2L	18467957	2L_18467957_SNP [dm3] 2L_18467957_SNP [dm6]	G	C	2.141e^-4	0.991	INTRON let-7-C
2R	5150345	2R_5150345_SNP [dm3] 2R_9262840_SNP [dm6]	C	A	2.153e^-4	0.991	NON_SYNONYMOUS_CODING CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
3L	11555465	3L_11555465_SNP [dm3] 3L_11562365_SNP [dm6]	T	A	2.165e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
2L	19967616	2L_19967616_SNP [dm3] 2L_19967616_SNP [dm6]	G	A	2.171e^-4	0.991	SYNONYMOUS_CODING Hf	TF binding site mE1_TFBS_cad
3R	19758905	3R_19758905_SNP [dm3] 3R_23933183_SNP [dm6]	G	T	2.182e^-4	0.991	SYNONYMOUS_CODING RpS19b UPSTREAM CG5854 DOWNSTREAM CG13599	TF binding site BDTNP1_TFBS_dl
3L	10539253	3L_10539253_DEL [dm3] 3L_10546153_DEL [dm6]	TGTCATGGCCTG...	T	2.184e^-4	0.991	INTRON A2bp1
3R	26276408	3R_26276408_SNP [dm3] 3R_30450686_SNP [dm6]	G	T	2.203e^-4	0.991	UPSTREAM aralar1 INTRON aralar1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3L	11213535	3L_11213535_INS [dm3] 3L_11220435_INS [dm6]	T	TGT	2.214e^-4	0.991	INTRON CG42671	TF binding site mE1_TFBS_cad
2R	3557044	2R_3557044_SNP [dm3] 2R_7669539_SNP [dm6]	A	G	2.214e^-4	0.991	UPSTREAM CG12042 DOWNSTREAM CG12826 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_run
2L	6845261	2L_6845261_SNP [dm3] 2L_6845261_SNP [dm6]	G	A	2.219e^-4	0.991	INTERGENIC
X	16896385	X_16896385_SNP [dm3] X_17002352_SNP [dm6]	G	A	2.220e^-4	0.991	INTRON CG45002
3L	7061730	3L_7061730_SNP [dm3] 3L_7068630_SNP [dm6]	G	A	2.221e^-4	0.991	DOWNSTREAM CG14823 INTRON CG8641 & 1 other
2R	16061592	2R_16061592_SNP [dm3] 2R_20174087_SNP [dm6]	A	C	2.240e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
3R	14113962	3R_14113962_SNP [dm3] 3R_18288240_SNP [dm6]	A	G	2.256e^-4	0.991	SYNONYMOUS_CODING CG7131 DOWNSTREAM l_3_05822	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	7560813	2L_7560813_SNP [dm3] 2L_7560813_SNP [dm6]	A	C	2.258e^-4	0.991	INTRON RapGAP1
2R	8780997	2R_8780997_SNP [dm3] 2R_12893492_SNP [dm6]	T	C	2.262e^-4	0.991	INTRON vg
3L	8025073	3L_8025073_SNP [dm3] 3L_8031973_SNP [dm6]	G	A	2.267e^-4	0.991	INTRON nmo
2R	8203125	2R_8203125_SNP [dm3] 2R_12315620_SNP [dm6]	A	T	2.268e^-4	0.991	INTRON CG30046
2R	8203127	2R_8203127_SNP [dm3] 2R_12315622_SNP [dm6]	T	A	2.268e^-4	0.991	INTRON CG30046
3L	11233191	3L_11233191_SNP [dm3] 3L_11240091_SNP [dm6]	G	A	2.276e^-4	0.991	INTERGENIC
2R	13151978	2R_13151978_SNP [dm3] 2R_17264473_SNP [dm6]	T	C	2.293e^-4	0.991	INTRON mbl	TF binding site BDTNP1_TFBS_z
3R	16264720	3R_16264720_SNP [dm3] 3R_20438998_SNP [dm6]	A	G	2.297e^-4	0.991	INTRON Gfrl
2R	6077428	2R_6077428_SNP [dm3] 2R_10189923_SNP [dm6]	G	T	2.299e^-4	0.991	INTRON KCNQ
2R	12410042	2R_12410042_SNP [dm3] 2R_16522537_SNP [dm6]	A	T	2.311e^-4	0.991	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3R	25198981	3R_25198981_SNP [dm3] 3R_29373259_SNP [dm6]	A	T	2.312e^-4	0.991	INTERGENIC
X	5445311	X_5445311_SNP [dm3] X_5551278_SNP [dm6]	C	A	2.314e^-4	0.991	INTRON Vsx2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2L	7554642	2L_7554642_SNP [dm3] 2L_7554642_SNP [dm6]	A	C	2.329e^-4	0.991	INTRON RapGAP1
X	22196459	X_22196459_SNP [dm3] X_22794623_SNP [dm6]	A	T	2.329e^-4	0.991	INTRON CR44997	transposable element FlyBase
3L	2617991	3L_2617991_INS [dm3] 3L_2617991_INS [dm6]	G	GCAAAT	2.330e^-4	0.991	INTRON Pxn
3L	1604662	3L_1604662_DEL [dm3] 3L_1604662_DEL [dm6]	AGTTGGGCAGCCTCTTCA...	A	2.332e^-4	0.991	UTR_5_PRIME CG33791 UTR_3_PRIME CG18170 UPSTREAM CG33791
3R	26289809	3R_26289809_SNP [dm3] 3R_30464087_SNP [dm6]	A	G	2.334e^-4	0.991	NON_SYNONYMOUS_CODING CDase	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
2R	7040883	2R_7040883_INS [dm3] 2R_11153378_INS [dm6]	C	CCC	2.335e^-4	0.991	INTRON CG13229
2L	6622199	2L_6622199_SNP [dm3] 2L_6622199_SNP [dm6]	C	T	2.340e^-4	0.991	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
3L	7768130	3L_7768130_SNP [dm3] 3L_7775030_SNP [dm6]	A	C	2.349e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
3L	2459587	3L_2459587_SNP [dm3] 3L_2459587_SNP [dm6]	A	G	2.389e^-4	0.991	SPLICE_SITE_REGION CG45186 INTRON CG45186
2L	6830092	2L_6830092_SNP [dm3] 2L_6830092_SNP [dm6]	C	T	2.390e^-4	0.991	INTRON sens-2	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	11248609	2L_11248609_SNP [dm3] 2L_11248609_SNP [dm6]	C	A	2.392e^-4	0.991	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8313981	2R_8313981_SNP [dm3] 2R_12426476_SNP [dm6]	C	A	2.399e^-4	0.991	SYNONYMOUS_CODING CG8525 DOWNSTREAM CG13154	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12871087	3L_12871087_SNP [dm3] 3L_12877987_SNP [dm6]	A	G	2.409e^-4	0.991	INTERGENIC
2L	7690836	2L_7690836_SNP [dm3] 2L_7690836_SNP [dm6]	T	A	2.420e^-4	0.991	DOWNSTREAM CG7025 INTRON CG18585	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	16659968	X_16659968_DEL [dm3] X_16765935_DEL [dm6]	AGTCATATTTATAG...	T	2.421e^-4	0.991	INTRON if
3L	8025387	3L_8025387_SNP [dm3] 3L_8032287_SNP [dm6]	A	C	2.437e^-4	0.991	INTRON nmo
3L	17903569	3L_17903569_SNP [dm3] 3L_17910469_SNP [dm6]	T	G	2.443e^-4	0.991	SYNONYMOUS_CODING CG5290 DOWNSTREAM CG14353	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
3L	4379684	3L_4379684_SNP [dm3] 3L_4379684_SNP [dm6]	T	G	2.443e^-4	0.991	UPSTREAM DopEcR INTRON DopEcR	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	14486193	2L_14486193_SNP [dm3] 2L_14486193_SNP [dm6]	T	G	2.444e^-4	0.991	EXON CR44731	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	22814532	3R_22814532_SNP [dm3] 3R_26988810_SNP [dm6]	A	G	2.456e^-4	0.991	UPSTREAM CG31075 DOWNSTREAM CG31076 INTERGENIC
2L	11342204	2L_11342204_INS [dm3] 2L_11342204_INS [dm6]	A	AA	2.463e^-4	0.991	DOWNSTREAM CG14926 INTERGENIC
2L	7963065	2L_7963065_SNP [dm3] 2L_7963065_SNP [dm6]	A	T	2.464e^-4	0.991	INTRON Snoo
2L	7558895	2L_7558895_SNP [dm3] 2L_7558895_SNP [dm6]	A	G	2.476e^-4	0.991	INTRON RapGAP1
2L	6622143	2L_6622143_SNP [dm3] 2L_6622143_SNP [dm6]	T	C	2.481e^-4	0.991	UPSTREAM CG11320 & 1 other INTERGENIC	TF binding site mE1_TFBS_bab1
X	3433562	X_3433562_INS [dm3] X_3539529_INS [dm6]	C	CACCCAC	2.485e^-4	0.991	INTRON CG32791
2L	7898254	2L_7898254_SNP [dm3] 2L_7898254_SNP [dm6]	G	T	2.486e^-4	0.991	INTRON Snoo
2L	19909863	2L_19909863_SNP [dm3] 2L_19909863_SNP [dm6]	A	G	2.498e^-4	0.991	SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
2L	9832306	2L_9832306_SNP [dm3] 2L_9832306_SNP [dm6]	T	C	2.507e^-4	0.991	INTRON nAChRalpha6
3R	7531144	3R_7531144_SNP [dm3] 3R_11705422_SNP [dm6]	A	C	2.511e^-4	0.991	DOWNSTREAM I-t INTERGENIC
2R	6077429	2R_6077429_SNP [dm3] 2R_10189924_SNP [dm6]	A	G	2.513e^-4	0.991	INTRON KCNQ
2L	2882798	2L_2882798_SNP [dm3] 2L_2882798_SNP [dm6]	A	G	2.550e^-4	0.991	SYNONYMOUS_CODING NTPase UTR_5_PRIME NTPase	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	13629115	X_13629115_DEL [dm3] X_13735082_DEL [dm6]	GAAACTGCGCTAGC...	G	2.562e^-4	0.991	INTRON g
2R	6282939	2R_6282939_SNP [dm3] 2R_10395434_SNP [dm6]	C	G	2.573e^-4	0.991	UPSTREAM CG42732 INTRON CG42732
3L	21032834	3L_21032834_SNP [dm3] 3L_21039734_SNP [dm6]	G	T	2.588e^-4	0.991	INTRON siz
2L	12405143	2L_12405143_SNP [dm3] 2L_12405143_SNP [dm6]	G	A	2.591e^-4	0.991	UPSTREAM vir-1 INTRON vir-1
3L	15901994	3L_15901994_SNP [dm3] 3L_15908894_SNP [dm6]	T	C	2.592e^-4	0.991	INTRON sff
3L	11555509	3L_11555509_SNP [dm3] 3L_11562409_SNP [dm6]	G	A	2.606e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	12592078	2L_12592078_SNP [dm3] 2L_12592078_SNP [dm6]	T	A	2.610e^-4	0.991	INTRON nub
3R	25121309	3R_25121309_SNP [dm3] 3R_29295587_SNP [dm6]	G	A	2.616e^-4	0.991	UTR_3_PRIME CG14506 DOWNSTREAM CG14506
2L	20005059	2L_20005059_SNP [dm3] 2L_20005059_SNP [dm6]	G	C	2.616e^-4	0.991	INTRON CG43861
X	6279776	X_6279776_SNP [dm3] X_6385743_SNP [dm6]	T	G	2.616e^-4	0.991	DOWNSTREAM CG33664 INTERGENIC	TF binding site mE1_TFBS_chinmo
2L	11589304	2L_11589304_SNP [dm3] 2L_11589304_SNP [dm6]	T	A	2.626e^-4	0.991	DOWNSTREAM CR44496 INTRON kek2
3R	6488766	3R_6488766_SNP [dm3] 3R_10663044_SNP [dm6]	C	T	2.640e^-4	0.991	INTERGENIC
2L	15880363	2L_15880363_SNP [dm3] 2L_15880363_SNP [dm6]	G	A	2.646e^-4	0.991	UPSTREAM CG7653 INTERGENIC
2L	10938653	2L_10938653_SNP [dm3] 2L_10938653_SNP [dm6]	A	C	2.649e^-4	0.991	DOWNSTREAM CG14072 INTRON dpr2	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3L	3714614	3L_3714614_SNP [dm3] 3L_3714614_SNP [dm6]	T	C	2.657e^-4	0.991	UTR_3_PRIME CG43089 DOWNSTREAM CG32264 & 1 other
X	3347049	X_3347049_SNP [dm3] X_3453016_SNP [dm6]	C	T	2.657e^-4	0.991	INTRON CR44999	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
3R	26048560	3R_26048560_DEL [dm3] 3R_30222838_DEL [dm6]	TCAACTT	T	2.683e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
3L	7282086	3L_7282086_SNP [dm3] 3L_7288986_SNP [dm6]	T	C	2.685e^-4	0.991	INTRON unc-13-4A
3R	24156943	3R_24156943_SNP [dm3] 3R_28331221_SNP [dm6]	G	A	2.700e^-4	0.991	UPSTREAM larp INTRON larp	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3R	4060971	3R_4060971_SNP [dm3] 3R_8235249_SNP [dm6]	A	G	2.702e^-4	0.991	INTRON DNApol-iota	TF binding site mE1_TFBS_sens
3L	7043712	3L_7043712_SNP [dm3] 3L_7050612_SNP [dm6]	G	A	2.702e^-4	0.991	SYNONYMOUS_CODING Mp
2L	1577413	2L_1577413_SNP [dm3] 2L_1577413_SNP [dm6]	C	T	2.706e^-4	0.991	INTRON haf
2L	12621256	2L_12621256_SNP [dm3] 2L_12621256_SNP [dm6]	G	T	2.710e^-4	0.991	INTRON Ref2 & 1 other
3L	1462476	3L_1462476_SNP [dm3] 3L_1462476_SNP [dm6]	A	T	2.722e^-4	0.991	INTRON Ptp61F EXON CR44842	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	6550214	3L_6550214_SNP [dm3] 3L_6557114_SNP [dm6]	C	T	2.734e^-4	0.991	INTRON CG18769
3L	21085608	3L_21085608_SNP [dm3] 3L_21092508_SNP [dm6]	C	T	2.768e^-4	0.991	INTRON ko
X	5532270	X_5532270_SNP [dm3] X_5638237_SNP [dm6]	C	A	2.772e^-4	0.991	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
X	3433575	X_3433575_SNP [dm3] X_3539542_SNP [dm6]	A	G	2.780e^-4	0.991	INTRON CG32791
3R	480817	3R_480817_SNP [dm3] 3R_4655095_SNP [dm6]	A	C	2.784e^-4	0.991	UPSTREAM spartin DOWNSTREAM Karybeta3 INTRON spartin	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA
3R	24215528	3R_24215528_SNP [dm3] 3R_28389806_SNP [dm6]	C	T	2.790e^-4	0.991	INTERGENIC
2R	3267574	2R_3267574_SNP [dm3] 2R_7380069_SNP [dm6]	T	G	2.797e^-4	0.991	INTRON Dscam1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_HSA
2L	18934545	2L_18934545_SNP [dm3] 2L_18934545_SNP [dm6]	C	G	2.806e^-4	0.991	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	11555487	3L_11555487_SNP [dm3] 3L_11562387_SNP [dm6]	T	A	2.813e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	11555675	3L_11555675_DEL [dm3] 3L_11562575_DEL [dm6]	TT	T	2.813e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11555678	3L_11555678_SNP [dm3] 3L_11562578_SNP [dm6]	G	C	2.813e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	5483445	3L_5483445_SNP [dm3] 3L_5490345_SNP [dm6]	T	C	2.818e^-4	0.991	INTERGENIC
2R	7021589	2R_7021589_DEL [dm3] 2R_11134084_DEL [dm6]	CCATCT	C	2.826e^-4	0.991	INTERGENIC
2R	7021597	2R_7021597_SNP [dm3] 2R_11134092_SNP [dm6]	A	T	2.826e^-4	0.991	INTERGENIC
3R	26157321	3R_26157321_SNP [dm3] 3R_30331599_SNP [dm6]	A	T	2.857e^-4	0.991	INTRON hdc
2R	15314067	2R_15314067_INS [dm3] 2R_19426562_INS [dm6]	A	ATGTA	2.858e^-4	0.991	INTRON CalpA
3L	13887676	3L_13887676_SNP [dm3] 3L_13894576_SNP [dm6]	A	G	2.864e^-4	0.991	INTRON dysc
X	22196385	X_22196385_SNP [dm3] X_22794549_SNP [dm6]	A	G	2.872e^-4	0.991	INTRON CR44997	transposable element FlyBase
3L	9720920	3L_9720920_SNP [dm3] 3L_9727820_SNP [dm6]	G	C	2.879e^-4	0.991	NON_SYNONYMOUS_CODING Naa60	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18453131	2L_18453131_SNP [dm3] 2L_18453131_SNP [dm6]	C	T	2.893e^-4	0.991	SYNONYMOUS_CODING bsf	TF binding site mE1_TFBS_cad mE1_TFBS_sens
X	13629113	X_13629113_SNP [dm3] X_13735080_SNP [dm6]	T	A	2.905e^-4	0.991	INTRON g
2R	5865901	2R_5865901_SNP [dm3] 2R_9978396_SNP [dm6]	G	T	2.917e^-4	0.991	UPSTREAM eve EXON CR43948	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_Trl
X	5532274	X_5532274_INS [dm3] X_5638241_INS [dm6]	C	TA	2.917e^-4	0.991	UPSTREAM CG42492 INTRON CG42492	TF binding site BDTNP1_TFBS_dl mE1_TFBS_Trl
3R	6506743	3R_6506743_SNP [dm3] 3R_10681021_SNP [dm6]	T	C	2.918e^-4	0.991	UPSTREAM CG14688 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
3R	7348736	3R_7348736_SNP [dm3] 3R_11523014_SNP [dm6]	A	G	2.920e^-4	0.991	INTERGENIC
2L	12619289	2L_12619289_SNP [dm3] 2L_12619289_SNP [dm6]	A	T	2.925e^-4	0.991	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
2R	4335604	2R_4335604_SNP [dm3] 2R_8448099_SNP [dm6]	G	A	2.928e^-4	0.991	SPLICE_SITE_REGION Cyp4e1 DOWNSTREAM Cyp4e2 INTRON Cyp4e1
2L	6788902	2L_6788902_SNP [dm3] 2L_6788902_SNP [dm6]	C	T	2.929e^-4	0.991	DOWNSTREAM nrv2 INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_Trl
3R	21193970	3R_21193970_SNP [dm3] 3R_25368248_SNP [dm6]	C	A	2.932e^-4	0.991	INTRON Fur1
3R	14064721	3R_14064721_SNP [dm3] 3R_18238999_SNP [dm6]	G	T	2.947e^-4	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	8031403	3L_8031403_SNP [dm3] 3L_8038303_SNP [dm6]	A	C	2.953e^-4	0.991	INTRON nmo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_inv
X	2852176	X_2852176_SNP [dm3] X_2958143_SNP [dm6]	C	T	2.959e^-4	0.991	INTRON kirre & 1 other	TF binding site mE1_TFBS_cad
3R	14880273	3R_14880273_SNP [dm3] 3R_19054551_SNP [dm6]	G	C	2.967e^-4	0.991	INTRON cdi	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	21193955	3R_21193955_SNP [dm3] 3R_25368233_SNP [dm6]	G	T	2.974e^-4	0.991	INTRON Fur1
2R	17988824	2R_17988824_SNP [dm3] 2R_22101319_SNP [dm6]	A	T	2.977e^-4	0.991	INTERGENIC
2R	6290299	2R_6290299_SNP [dm3] 2R_10402794_SNP [dm6]	T	G	2.982e^-4	0.991	INTRON CG42732
2L	19909857	2L_19909857_SNP [dm3] 2L_19909857_SNP [dm6]	G	A	2.986e^-4	0.991	SYNONYMOUS_CODING sick DOWNSTREAM CR43097	TF binding site mE1_TFBS_chinmo
2L	16741809	2L_16741809_SNP [dm3] 2L_16741809_SNP [dm6]	A	G	3.019e^-4	0.991	NON_SYNONYMOUS_CODING ChLD3 DOWNSTREAM LSm7
X	19168464	X_19168464_SNP [dm3] X_19274431_SNP [dm6]	C	G	3.019e^-4	0.991	NON_SYNONYMOUS_CODING CG32537 DOWNSTREAM CG32536	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	4637783	X_4637783_DEL [dm3] X_4743750_DEL [dm6]	GAGTCCGAACTCAGTG...	G	3.023e^-4	0.991	INTERGENIC
2R	8932076	2R_8932076_DEL [dm3] 2R_13044571_DEL [dm6]	AAGTT	A	3.030e^-4	0.991	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	2713605	3L_2713605_SNP [dm3] 3L_2713605_SNP [dm6]	C	A	3.033e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	21088642	3L_21088642_SNP [dm3] 3L_21095542_SNP [dm6]	C	T	3.034e^-4	0.991	INTRON ko
3R	2680986	3R_2680986_INS [dm3] 3R_6855264_INS [dm6]	C	CC	3.036e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	19927179	2L_19927179_SNP [dm3] 2L_19927179_SNP [dm6]	T	A	3.044e^-4	0.991	INTRON sick
2R	10531016	2R_10531016_SNP [dm3] 2R_14643511_SNP [dm6]	G	A	3.046e^-4	0.991	INTERGENIC
3R	12176921	3R_12176921_SNP [dm3] 3R_16351199_SNP [dm6]	A	G	3.063e^-4	0.991	SYNONYMOUS_CODING CG10311 DOWNSTREAM Manf	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_HSA
2L	3269910	2L_3269910_SNP [dm3] 2L_3269910_SNP [dm6]	C	T	3.070e^-4	0.991	SPLICE_SITE_REGION CG3347 INTRON CG3347
2R	6290519	2R_6290519_SNP [dm3] 2R_10403014_SNP [dm6]	G	A	3.076e^-4	0.991	INTRON CG42732
3L	17769125	3L_17769125_SNP [dm3] 3L_17776025_SNP [dm6]	T	C	3.078e^-4	0.991	INTERGENIC
3R	22815692	3R_22815692_SNP [dm3] 3R_26989970_SNP [dm6]	A	T	3.081e^-4	0.991	UPSTREAM CG31076 INTERGENIC
X	13410508	X_13410508_INS [dm3] X_13516475_INS [dm6]	A	AA	3.084e^-4	0.991	INTRON Neto
2L	2091575	2L_2091575_SNP [dm3] 2L_2091575_SNP [dm6]	T	G	3.085e^-4	0.991	INTRON dpr3
X	13629114	X_13629114_SNP [dm3] X_13735081_SNP [dm6]	G	T	3.091e^-4	0.991	INTRON g
3R	26157328	3R_26157328_SNP [dm3] 3R_30331606_SNP [dm6]	T	C	3.093e^-4	0.991	INTRON hdc
3R	6380928	3R_6380928_SNP [dm3] 3R_10555206_SNP [dm6]	T	G	3.095e^-4	0.991	INTRON hth	TF binding site BDTNP1_TFBS_twi
2L	7898122	2L_7898122_SNP [dm3] 2L_7898122_SNP [dm6]	C	G	3.112e^-4	0.991	INTRON Snoo	TF binding site mE1_TFBS_cad
2R	19820053	2R_19820053_SNP [dm3] 2R_23932530_SNP [dm6]	A	T	3.116e^-4	0.991	INTRON Ca-P60A	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_sens
2L	7898063	2L_7898063_SNP [dm3] 2L_7898063_SNP [dm6]	G	T	3.122e^-4	0.991	INTRON Snoo	TF binding site mE1_TFBS_cad
3R	11546727	3R_11546727_SNP [dm3] 3R_15721005_SNP [dm6]	A	G	3.126e^-4	0.991	INTERGENIC
3L	11510556	3L_11510556_DEL [dm3] 3L_11517456_DEL [dm6]	TGTTTT	T	3.135e^-4	0.991	INTRON CG7512	TF binding site BDTNP1_TFBS_sna
2L	19892784	2L_19892784_SNP [dm3] 2L_19892784_SNP [dm6]	A	C	3.135e^-4	0.991	UPSTREAM CG10481 INTRON sick	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	16773798	X_16773798_SNP [dm3] X_16879765_SNP [dm6]	T	C	3.144e^-4	0.991	INTERGENIC
3L	11371648	3L_11371648_SNP [dm3] 3L_11378548_SNP [dm6]	T	G	3.152e^-4	0.991	INTERGENIC
2L	7898123	2L_7898123_SNP [dm3] 2L_7898123_SNP [dm6]	C	G	3.153e^-4	0.991	INTRON Snoo	TF binding site mE1_TFBS_cad
X	17875658	X_17875658_SNP [dm3] X_17981625_SNP [dm6]	T	G	3.158e^-4	0.991	INTRON Sh
3R	24668470	3R_24668470_SNP [dm3] 3R_28842748_SNP [dm6]	A	G	3.159e^-4	0.991	UPSTREAM Apc INTRON Apc
2R	12015409	2R_12015409_SNP [dm3] 2R_16127904_SNP [dm6]	G	A	3.159e^-4	0.991	INTRON spin	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	6285090	2R_6285090_INS [dm3] 2R_10397585_INS [dm6]	T	TACACGACCCGCTCTT...	3.163e^-4	0.991	INTRON CG42732
3L	11555535	3L_11555535_SNP [dm3] 3L_11562435_SNP [dm6]	A	T	3.164e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	11784689	3L_11784689_SNP [dm3] 3L_11791589_SNP [dm6]	T	C	3.170e^-4	0.991	SYNONYMOUS_CODING CG5964	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	20614396	X_20614396_SNP [dm3] X_20743369_SNP [dm6]	C	A	3.173e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_sens
2L	15740724	2L_15740724_SNP [dm3] 2L_15740724_SNP [dm6]	A	T	3.180e^-4	0.991	INTRON CycE	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	6923930	2R_6923930_SNP [dm3] 2R_11036425_SNP [dm6]	G	A	3.187e^-4	0.991	INTRON luna
3L	11812644	3L_11812644_SNP [dm3] 3L_11819544_SNP [dm6]	G	T	3.198e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812659	3L_11812659_SNP [dm3] 3L_11819559_SNP [dm6]	A	C	3.198e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812660	3L_11812660_SNP [dm3] 3L_11819560_SNP [dm6]	G	A	3.198e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3L	11812662	3L_11812662_SNP [dm3] 3L_11819562_SNP [dm6]	C	A	3.198e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	1930339	3R_1930339_SNP [dm3] 3R_6104617_SNP [dm6]	A	T	3.206e^-4	0.991	INTRON CR44929 EXON CR44929
2L	7898120	2L_7898120_SNP [dm3] 2L_7898120_SNP [dm6]	G	T	3.223e^-4	0.991	INTRON Snoo	TF binding site mE1_TFBS_cad
2L	18577818	2L_18577818_SNP [dm3] 2L_18577818_SNP [dm6]	T	A	3.224e^-4	0.991	INTRON Pde11
2L	7525356	2L_7525356_SNP [dm3] 2L_7525356_SNP [dm6]	G	A	3.231e^-4	0.991	INTRON RapGAP1	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12056437	3L_12056437_SNP [dm3] 3L_12063337_SNP [dm6]	C	G	3.236e^-4	0.991	INTRON rols	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	26160075	3R_26160075_SNP [dm3] 3R_30334353_SNP [dm6]	T	C	3.238e^-4	0.991	INTRON hdc
2R	4153471	2R_4153471_SNP [dm3] 2R_8265966_SNP [dm6]	A	G	3.243e^-4	0.991	SYNONYMOUS_CODING CG30375	TF binding site mE1_TFBS_chinmo
2L	17127501	2L_17127501_SNP [dm3] 2L_17127501_SNP [dm6]	A	C	3.245e^-4	0.991	INTERGENIC
2L	12608155	2L_12608155_INS [dm3] 2L_12608155_INS [dm6]	G	GG	3.247e^-4	0.991	INTRON nub	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Kr
3L	18220700	3L_18220700_DEL [dm3] 3L_18227600_DEL [dm6]	TT	C	3.249e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
2L	6624700	2L_6624700_DEL [dm3] 2L_6624700_DEL [dm6]	GCTAGATCA	G	3.251e^-4	0.991	DOWNSTREAM Oatp26F INTRON CG34345
2L	15733227	2L_15733227_SNP [dm3] 2L_15733227_SNP [dm6]	A	G	3.252e^-4	0.991	INTRON CycE	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18573435	2L_18573435_SNP [dm3] 2L_18573435_SNP [dm6]	A	G	3.256e^-4	0.991	INTRON Pde11
3L	11812625	3L_11812625_SNP [dm3] 3L_11819525_SNP [dm6]	G	A	3.260e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
3R	2788954	3R_2788954_DEL [dm3] 3R_6963232_DEL [dm6]	GG	G	3.267e^-4	0.991	INTRON Antp	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	16345466	3R_16345466_INS [dm3] 3R_20519744_INS [dm6]	C	CCACACAC	3.268e^-4	0.991	INTERGENIC
2L	14694155	2L_14694155_SNP [dm3] 2L_14694155_SNP [dm6]	G	C	3.272e^-4	0.991	INTERGENIC
3R	22293845	3R_22293845_SNP [dm3] 3R_26468123_SNP [dm6]	A	C	3.274e^-4	0.991	INTRON CG5455
2L	7612191	2L_7612191_SNP [dm3] 2L_7612191_SNP [dm6]	C	A	3.275e^-4	0.991	INTRON CG6739
2L	7559183	2L_7559183_SNP [dm3] 2L_7559183_SNP [dm6]	C	A	3.275e^-4	0.991	INTRON RapGAP1
X	14609358	X_14609358_SNP [dm3] X_14715325_SNP [dm6]	T	C	3.281e^-4	0.991	INTRON NetB
2R	13398050	2R_13398050_SNP [dm3] 2R_17510545_SNP [dm6]	G	A	3.283e^-4	0.991	UTR_3_PRIME CG34193 UPSTREAM CG4847
X	5449520	X_5449520_SNP [dm3] X_5555487_SNP [dm6]	C	A	3.291e^-4	0.991	INTRON Vsx2	TF binding site mE1_TFBS_cnc mE1_TFBS_Kr
X	16310599	X_16310599_DEL [dm3] X_16416566_DEL [dm6]	ACA	A	3.293e^-4	0.991	SPLICE_SITE_REGION Traf-like DOWNSTREAM AnxB11 INTRON Traf-like
3L	5403382	3L_5403382_SNP [dm3] 3L_5410282_SNP [dm6]	G	C	3.295e^-4	0.991	INTERGENIC
3R	15421130	3R_15421130_SNP [dm3] 3R_19595408_SNP [dm6]	T	A	3.300e^-4	0.991	UTR_3_PRIME Dys DOWNSTREAM Dys
2R	15577810	2R_15577810_SNP [dm3] 2R_19690305_SNP [dm6]	C	T	3.300e^-4	0.991	UPSTREAM CG15126 INTERGENIC
X	22196512	X_22196512_SNP [dm3] X_22794676_SNP [dm6]	G	C	3.308e^-4	0.991	INTRON CR44997	transposable element FlyBase
3R	21809691	3R_21809691_SNP [dm3] 3R_25983969_SNP [dm6]	T	A	3.311e^-4	0.991	SYNONYMOUS_CODING Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
X	7680876	X_7680876_SNP [dm3] X_7786843_SNP [dm6]	A	G	3.312e^-4	0.991	INTERGENIC
2L	19914369	2L_19914369_SNP [dm3] 2L_19914369_SNP [dm6]	C	T	3.327e^-4	0.991	UPSTREAM Victoria INTRON sick
3R	14906853	3R_14906853_DEL [dm3] 3R_19081131_DEL [dm6]	TTCT	T	3.327e^-4	0.991	INTRON cdi
2R	14552779	2R_14552779_SNP [dm3] 2R_18665274_SNP [dm6]	G	T	3.333e^-4	0.991	NON_SYNONYMOUS_CODING CG33136	TF binding site mE1_TFBS_sens
X	16818146	X_16818146_DEL [dm3] X_16924113_DEL [dm6]	GG	G	3.337e^-4	0.991	INTRON CG4928
2R	17885008	2R_17885008_SNP [dm3] 2R_21997503_SNP [dm6]	A	G	3.351e^-4	0.991	INTRON CG34370
X	17532207	X_17532207_SNP [dm3] X_17638174_SNP [dm6]	A	G	3.351e^-4	0.991	SYNONYMOUS_CODING CG5800 DOWNSTREAM RhoGAPp190
X	19534673	X_19534673_SNP [dm3] X_19640640_SNP [dm6]	A	G	3.352e^-4	0.991	UTR_3_PRIME Rcd-1 DOWNSTREAM CG12237	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7737609	3L_7737609_SNP [dm3] 3L_7744509_SNP [dm6]	A	G	3.354e^-4	0.991	INTRON CG32373
2L	18935117	2L_18935117_SNP [dm3] 2L_18935117_SNP [dm6]	T	A	3.362e^-4	0.991	INTRON ssp3	silencer mE1_HDAC_PRE TF binding site mE1_TFBS_h mE1_TFBS_HSA
3R	17148635	3R_17148635_SNP [dm3] 3R_21322913_SNP [dm6]	A	G	3.370e^-4	0.991	SYNONYMOUS_CODING CG16791
3R	25199918	3R_25199918_SNP [dm3] 3R_29374196_SNP [dm6]	G	C	3.378e^-4	0.991	INTERGENIC
3L	11553405	3L_11553405_SNP [dm3] 3L_11560305_SNP [dm6]	T	A	3.387e^-4	0.991	INTRON Mob2
X	12937033	X_12937033_SNP [dm3] X_13043000_SNP [dm6]	C	A	3.391e^-4	0.991	INTRON rad
2R	13074969	2R_13074969_SNP [dm3] 2R_17187464_SNP [dm6]	C	G	3.398e^-4	0.991	DOWNSTREAM CR44388 INTERGENIC	TF binding site BDTNP1_TFBS_z mE1_TFBS_HSA
2R	19477791	2R_19477791_SNP [dm3] 2R_23590268_SNP [dm6]	G	A	3.399e^-4	0.991	INTRON apt
3R	14064769	3R_14064769_SNP [dm3] 3R_18239047_SNP [dm6]	T	C	3.409e^-4	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
3L	16168380	3L_16168380_SNP [dm3] 3L_16175280_SNP [dm6]	G	T	3.432e^-4	0.991	INTERGENIC
2L	7559263	2L_7559263_SNP [dm3] 2L_7559263_SNP [dm6]	A	C	3.435e^-4	0.991	INTRON RapGAP1
3L	7775681	3L_7775681_SNP [dm3] 3L_7782581_SNP [dm6]	C	T	3.436e^-4	0.991	INTRON CG32369	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
X	8749182	X_8749182_SNP [dm3] X_8855149_SNP [dm6]	C	T	3.440e^-4	0.991	INTRON CG12075
X	290528	X_290528_SNP [dm3] X_396495_SNP [dm6]	A	C	3.444e^-4	0.991	SYNONYMOUS_CODING sc INTRON CG32816	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Trl
3R	24162893	3R_24162893_SNP [dm3] 3R_28337171_SNP [dm6]	G	T	3.445e^-4	0.991	UTR_3_PRIME Gfat2 UPSTREAM larp	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2R	14201994	2R_14201994_SNP [dm3] 2R_18314489_SNP [dm6]	T	A	3.448e^-4	0.991	INTRON sbb
2L	6991290	2L_6991290_SNP [dm3] 2L_6991290_SNP [dm6]	T	A	3.453e^-4	0.991	INTRON uif
2L	7417198	2L_7417198_SNP [dm3] 2L_7417198_SNP [dm6]	C	T	3.472e^-4	0.991	INTRON chm	TF binding site BDTNP1_TFBS_dl
2R	6924015	2R_6924015_SNP [dm3] 2R_11036510_SNP [dm6]	T	C	3.473e^-4	0.991	INTRON luna
3R	21339504	3R_21339504_SNP [dm3] 3R_25513782_SNP [dm6]	T	A	3.474e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
2L	1011515	2L_1011515_SNP [dm3] 2L_1011515_SNP [dm6]	C	T	3.487e^-4	0.991	UTR_3_PRIME IA-2
3L	7946357	3L_7946357_SNP [dm3] 3L_7953257_SNP [dm6]	C	T	3.488e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	6081112	2R_6081112_SNP [dm3] 2R_10193607_SNP [dm6]	C	A	3.495e^-4	0.991	INTERGENIC
3L	7119988	3L_7119988_SNP [dm3] 3L_7126888_SNP [dm6]	C	T	3.499e^-4	0.991	SYNONYMOUS_CODING BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25483389	3R_25483389_SNP [dm3] 3R_29657667_SNP [dm6]	T	C	3.502e^-4	0.991	INTRON Dop1R2
X	22187758	X_22187758_SNP [dm3] X_22785922_SNP [dm6]	C	A	3.505e^-4	0.991	INTRON CR44997
2R	3929436	2R_3929436_SNP [dm3] 2R_8041931_SNP [dm6]	C	G	3.510e^-4	0.991	SYNONYMOUS_CODING Optix
3L	11830358	3L_11830358_SNP [dm3] 3L_11837258_SNP [dm6]	C	T	3.512e^-4	0.991	UPSTREAM CG43064 INTERGENIC
3R	19660100	3R_19660100_SNP [dm3] 3R_23834378_SNP [dm6]	T	A	3.516e^-4	0.991	INTRON CG34355
3L	12056974	3L_12056974_SNP [dm3] 3L_12063874_SNP [dm6]	G	A	3.521e^-4	0.991	INTRON rols
2L	2021925	2L_2021925_SNP [dm3] 2L_2021925_SNP [dm6]	T	C	3.521e^-4	0.991	INTRON CG4238
2R	8136797	2R_8136797_SNP [dm3] 2R_12249292_SNP [dm6]	G	A	3.523e^-4	0.991	INTERGENIC
2R	9785195	2R_9785195_SNP [dm3] 2R_13897690_SNP [dm6]	G	A	3.525e^-4	0.991	UTR_5_PRIME shot INTRON shot	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2L	7417195	2L_7417195_SNP [dm3] 2L_7417195_SNP [dm6]	T	A	3.527e^-4	0.991	INTRON chm	TF binding site BDTNP1_TFBS_dl
X	20614400	X_20614400_SNP [dm3] X_20743373_SNP [dm6]	T	C	3.530e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_sens
3L	5623293	3L_5623293_SNP [dm3] 3L_5630193_SNP [dm6]	A	G	3.531e^-4	0.991	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
2L	18591644	2L_18591644_SNP [dm3] 2L_18591644_SNP [dm6]	C	A	3.537e^-4	0.991	INTRON CG15160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sbb
2L	10493719	2L_10493719_SNP [dm3] 2L_10493719_SNP [dm6]	C	G	3.538e^-4	0.991	SYNONYMOUS_CODING Myo31DF	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3R	19361203	3R_19361203_SNP [dm3] 3R_23535481_SNP [dm6]	T	A	3.540e^-4	0.991	SYNONYMOUS_CODING CG16732 UPSTREAM CG10170
3L	15275402	3L_15275402_SNP [dm3] 3L_15282302_SNP [dm6]	G	C	3.551e^-4	0.991	INTERGENIC
3R	5319666	3R_5319666_SNP [dm3] 3R_9493944_SNP [dm6]	G	A	3.554e^-4	0.991	UPSTREAM CG16779 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	19050635	3R_19050635_SNP [dm3] 3R_23224913_SNP [dm6]	T	C	3.556e^-4	0.991	INTRON cnc
3R	21809480	3R_21809480_SNP [dm3] 3R_25983758_SNP [dm6]	T	A	3.557e^-4	0.991	INTRON Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3L	3113605	3L_3113605_DEL [dm3] 3L_3113605_DEL [dm6]	TTTA	T	3.560e^-4	0.991	DOWNSTREAM prominin-like	TF binding site mE1_TFBS_HSA
2R	3337449	2R_3337449_SNP [dm3] 2R_7449944_SNP [dm6]	A	C	3.562e^-4	0.991	UTR_3_PRIME CG11125 DOWNSTREAM CG11125 INTRON fa2h	TF binding site BDTNP1_TFBS_twi
2L	7551326	2L_7551326_SNP [dm3] 2L_7551326_SNP [dm6]	T	C	3.573e^-4	0.991	INTRON RapGAP1
2L	16377256	2L_16377256_SNP [dm3] 2L_16377256_SNP [dm6]	C	T	3.574e^-4	0.991	INTERGENIC
2R	6081255	2R_6081255_SNP [dm3] 2R_10193750_SNP [dm6]	T	A	3.596e^-4	0.991	INTERGENIC
3L	12351661	3L_12351661_SNP [dm3] 3L_12358561_SNP [dm6]	A	G	3.599e^-4	0.991	INTERGENIC
X	5554436	X_5554436_SNP [dm3] X_5660403_SNP [dm6]	A	G	3.601e^-4	0.991	SYNONYMOUS_CODING CG42265	TF binding site BDTNP1_TFBS_sna mE1_TFBS_chinmo mE1_TFBS_HSA
3R	26832195	3R_26832195_SNP [dm3] 3R_31006473_SNP [dm6]	G	A	3.610e^-4	0.991	INTRON 5-HT7
2L	2942979	2L_2942979_SNP [dm3] 2L_2942979_SNP [dm6]	A	T	3.610e^-4	0.991	INTRON lilli
2L	7761876	2L_7761876_SNP [dm3] 2L_7761876_SNP [dm6]	T	C	3.617e^-4	0.991	INTRON CG7196
3L	13485283	3L_13485283_SNP [dm3] 3L_13492183_SNP [dm6]	T	A	3.618e^-4	0.991	INTRON Tgi
3L	7119997	3L_7119997_SNP [dm3] 3L_7126897_SNP [dm6]	C	T	3.632e^-4	0.991	SYNONYMOUS_CODING BBS1	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
2R	1373552	2R_1373552_SNP [dm3] 2R_5486047_SNP [dm6]	T	A	3.638e^-4	0.991	INTRON CG30440
3L	7945735	3L_7945735_INS [dm3] 3L_7952635_INS [dm6]	A	AGTA	3.642e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3R	22819017	3R_22819017_SNP [dm3] 3R_26993295_SNP [dm6]	T	C	3.642e^-4	0.991	INTERGENIC
2R	7274386	2R_7274386_SNP [dm3] 2R_11386881_SNP [dm6]	C	T	3.647e^-4	0.991	SYNONYMOUS_CODING sprt DOWNSTREAM CG30022	TF binding site mE1_TFBS_cad
X	4983924	X_4983924_SNP [dm3] X_5089891_SNP [dm6]	G	A	3.649e^-4	0.991	UTR_5_PRIME rg & 1 other	TF binding site BDTNP1_TFBS_dl
X	22168450	X_22168450_SNP [dm3] X_22766614_SNP [dm6]	G	C	3.649e^-4	0.991	INTRON CR44997 EXON CR44109
3R	11133035	3R_11133035_SNP [dm3] 3R_15307313_SNP [dm6]	C	T	3.650e^-4	0.991	DOWNSTREAM Tm1 INTRON Tm1
X	1009836	X_1009836_INS [dm3] X_1115803_INS [dm6]	T	TCGTTT	3.658e^-4	0.991	INTRON CG3655	TF binding site mE1_TFBS_HSA
3L	11119115	3L_11119115_SNP [dm3] 3L_11126015_SNP [dm6]	G	A	3.662e^-4	0.991	INTRON CG42575	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	20855619	2L_20855619_SNP [dm3] 2L_20855619_SNP [dm6]	G	C	3.663e^-4	0.991	INTRON twit
2L	12492895	2L_12492895_SNP [dm3] 2L_12492895_SNP [dm6]	C	T	3.664e^-4	0.991	UPSTREAM bun INTRON bun
3L	11418560	3L_11418560_SNP [dm3] 3L_11425460_SNP [dm6]	C	T	3.667e^-4	0.991	SYNONYMOUS_CODING CG7560	TF binding site mE1_TFBS_cad
3L	17817763	3L_17817763_SNP [dm3] 3L_17824663_SNP [dm6]	G	A	3.669e^-4	0.991	INTRON Grd
2L	8222667	2L_8222667_SNP [dm3] 2L_8222667_SNP [dm6]	G	A	3.674e^-4	0.991	SYNONYMOUS_CODING Pvr
X	8913259	X_8913259_SNP [dm3] X_9019226_SNP [dm6]	G	T	3.683e^-4	0.991	INTRON CR43836 & 1 other
2L	15935478	2L_15935478_SNP [dm3] 2L_15935478_SNP [dm6]	G	C	3.690e^-4	0.991	INTRON beat-Ib
2L	4310045	2L_4310045_SNP [dm3] 2L_4310045_SNP [dm6]	T	C	3.701e^-4	0.991	INTRON tutl
2R	14240754	2R_14240754_SNP [dm3] 2R_18353249_SNP [dm6]	C	T	3.722e^-4	0.991	INTRON sbb	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_HSA
2L	7554424	2L_7554424_SNP [dm3] 2L_7554424_SNP [dm6]	G	A	3.725e^-4	0.991	INTRON RapGAP1
3R	24659352	3R_24659352_SNP [dm3] 3R_28833630_SNP [dm6]	G	A	3.726e^-4	0.991	NON_SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
3L	5623292	3L_5623292_SNP [dm3] 3L_5630192_SNP [dm6]	T	A	3.729e^-4	0.991	UPSTREAM Blimp-1 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_Dll mE1_TFBS_HSA mE1_TFBS_Trl
X	18791573	X_18791573_DEL [dm3] X_18897540_DEL [dm6]	TT	T	3.736e^-4	0.991	DOWNSTREAM CG7349 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2R	1819064	2R_1819064_SNP [dm3] 2R_5931559_SNP [dm6]	C	A	3.739e^-4	0.991	DOWNSTREAM CG43366 INTERGENIC
2R	6295920	2R_6295920_SNP [dm3] 2R_10408415_SNP [dm6]	T	C	3.748e^-4	0.991	UPSTREAM CG12898 DOWNSTREAM CG43177 & 1 other INTRON CG42732
2R	17847492	2R_17847492_SNP [dm3] 2R_21959987_SNP [dm6]	G	T	3.749e^-4	0.991	INTERGENIC
2L	7550967	2L_7550967_SNP [dm3] 2L_7550967_SNP [dm6]	G	A	3.750e^-4	0.991	INTRON RapGAP1
2L	6870290	2L_6870290_SNP [dm3] 2L_6870290_SNP [dm6]	G	T	3.753e^-4	0.991	UTR_5_PRIME Nha1
X	1003155	X_1003155_SNP [dm3] X_1109122_SNP [dm6]	T	C	3.753e^-4	0.991	INTRON CG3655
2R	19904348	2R_19904348_SNP [dm3] 2R_24016825_SNP [dm6]	A	T	3.756e^-4	0.991	SPLICE_SITE_REGION CG4324 UTR_5_PRIME CG4324 UPSTREAM CG3121 INTRON CG4324	TF binding site BDTNP1_TFBS_twi
2R	7022034	2R_7022034_SNP [dm3] 2R_11134529_SNP [dm6]	G	C	3.766e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2R	4874121	2R_4874121_SNP [dm3] 2R_8986616_SNP [dm6]	G	A	3.771e^-4	0.991	UPSTREAM CG8213 INTERGENIC
3L	11812673	3L_11812673_DEL [dm3] 3L_11819573_DEL [dm6]	AAAA	A	3.780e^-4	0.991	DOWNSTREAM CG11597 INTRON CG5946	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_Trl
2R	6282944	2R_6282944_SNP [dm3] 2R_10395439_SNP [dm6]	A	T	3.786e^-4	0.991	UPSTREAM CG42732 INTRON CG42732
2L	7553972	2L_7553972_SNP [dm3] 2L_7553972_SNP [dm6]	C	A	3.792e^-4	0.991	INTRON RapGAP1
X	19454202	X_19454202_SNP [dm3] X_19560169_SNP [dm6]	C	T	3.794e^-4	0.991	UTR_3_PRIME Grip84
X	22179945	X_22179945_SNP [dm3] X_22778109_SNP [dm6]	A	T	3.797e^-4	0.991	INTRON CR44997
X	9611441	X_9611441_SNP [dm3] X_9717408_SNP [dm6]	A	C	3.798e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
3L	15895687	3L_15895687_SNP [dm3] 3L_15902587_SNP [dm6]	T	C	3.808e^-4	0.991	UTR_3_PRIME sff
2L	18582159	2L_18582159_SNP [dm3] 2L_18582159_SNP [dm6]	A	C	3.825e^-4	0.991	INTRON Pde11	transposable element FlyBase
3L	7754929	3L_7754929_SNP [dm3] 3L_7761829_SNP [dm6]	G	A	3.832e^-4	0.991	SYNONYMOUS_CODING Hn START_GAINED Hn UTR_5_PRIME Hn
X	11911983	X_11911983_SNP [dm3] X_12017950_SNP [dm6]	T	C	3.833e^-4	0.991	UTR_5_PRIME Chrac-16 UPSTREAM CG15735 DOWNSTREAM regucalcin	TF binding site mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Ubx
3L	6506498	3L_6506498_DEL [dm3] 3L_6513398_DEL [dm6]	TAGT	C	3.838e^-4	0.991	INTRON sfl
2L	18448598	2L_18448598_SNP [dm3] 2L_18448598_SNP [dm6]	G	A	3.842e^-4	0.991	NON_SYNONYMOUS_CODING ncm DOWNSTREAM bsf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3R	996326	3R_996326_SNP [dm3] 3R_5170604_SNP [dm6]	T	C	3.853e^-4	0.991	DOWNSTREAM dpr16 INTERGENIC	TF binding site mE1_TFBS_cad
3R	3421179	3R_3421179_SNP [dm3] 3R_7595457_SNP [dm6]	G	A	3.856e^-4	0.991	INTRON CG34127
2R	1838715	2R_1838715_SNP [dm3] 2R_5951210_SNP [dm6]	G	T	3.856e^-4	0.991	INTERGENIC
2L	20683651	2L_20683651_SNP [dm3] 2L_20683651_SNP [dm6]	C	T	3.860e^-4	0.991	UTR_3_PRIME Hr38 DOWNSTREAM CG2617
3R	11113923	3R_11113923_SNP [dm3] 3R_15288201_SNP [dm6]	A	G	3.861e^-4	0.991	UTR_5_PRIME Tm1 INTRON Tm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Trl
3R	25500009	3R_25500009_SNP [dm3] 3R_29674287_SNP [dm6]	A	C	3.863e^-4	0.991	SYNONYMOUS_CODING Bub3 DOWNSTREAM ppk19
2L	13430034	2L_13430034_SNP [dm3] 2L_13430034_SNP [dm6]	G	A	3.881e^-4	0.991	INTRON CG42784
3L	16057173	3L_16057173_DEL [dm3] 3L_16064073_DEL [dm6]	TG	T	3.883e^-4	0.991	INTRON Mbs	TF binding site mE1_TFBS_HSA
X	4102134	X_4102134_DEL [dm3] X_4208101_DEL [dm6]	TT	T	3.900e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med mE1_TFBS_HSA
2L	20295372	2L_20295372_SNP [dm3] 2L_20295372_SNP [dm6]	G	T	3.906e^-4	0.991	UTR_3_PRIME CG12617 DOWNSTREAM CG12617
3L	2170809	3L_2170809_SNP [dm3] 3L_2170809_SNP [dm6]	A	G	3.908e^-4	0.991	DOWNSTREAM CR15821 INTRON CG5704
3L	8025613	3L_8025613_SNP [dm3] 3L_8032513_SNP [dm6]	C	A	3.914e^-4	0.991	INTRON nmo
3L	18467776	3L_18467776_SNP [dm3] 3L_18474676_SNP [dm6]	C	A	3.917e^-4	0.991	UPSTREAM CR44672 INTERGENIC
2L	8232627	2L_8232627_SNP [dm3] 2L_8232627_SNP [dm6]	C	T	3.921e^-4	0.991	INTRON Pvr
2L	12994982	2L_12994982_SNP [dm3] 2L_12994982_SNP [dm6]	A	T	3.923e^-4	0.991	INTRON CG12404
2L	12014148	2L_12014148_DEL [dm3] 2L_12014148_DEL [dm6]	CG	C	3.937e^-4	0.991	DOWNSTREAM CG6734 & 1 other INTERGENIC
3L	16497527	3L_16497527_SNP [dm3] 3L_16504427_SNP [dm6]	C	A	3.956e^-4	0.991	SYNONYMOUS_CODING CG43373 UTR_3_PRIME CG43373
2R	1830777	2R_1830777_SNP [dm3] 2R_5943272_SNP [dm6]	A	G	3.971e^-4	0.991	INTERGENIC
3R	22817649	3R_22817649_SNP [dm3] 3R_26991927_SNP [dm6]	A	T	3.972e^-4	0.991	INTERGENIC
2R	4178901	2R_4178901_SNP [dm3] 2R_8291396_SNP [dm6]	A	C	3.976e^-4	0.991	INTERGENIC
3L	11555414	3L_11555414_SNP [dm3] 3L_11562314_SNP [dm6]	G	A	3.977e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	19033429	3L_19033429_SNP [dm3] 3L_19040329_SNP [dm6]	C	A	3.982e^-4	0.991	INTRON nkd	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad
X	4090138	X_4090138_SNP [dm3] X_4196105_SNP [dm6]	T	A	3.993e^-4	0.991	INTRON Fas2	TF binding site mE1_TFBS_HSA
2L	917812	2L_917812_SNP [dm3] 2L_917812_SNP [dm6]	G	T	3.994e^-4	0.991	DOWNSTREAM GluRIIC INTERGENIC	TF binding site mE1_TFBS_cad
2L	8449981	2L_8449981_SNP [dm3] 2L_8449981_SNP [dm6]	T	C	3.994e^-4	0.991	UTR_3_PRIME fu12 UPSTREAM U26
2L	18444364	2L_18444364_MNP [dm3] 2L_18444364_MNP [dm6]	TAGA	CTAT	3.995e^-4	0.991	DOWNSTREAM ncm INTERGENIC
2L	12621029	2L_12621029_DEL [dm3] 2L_12621029_DEL [dm6]	AA	A	4.002e^-4	0.991	INTRON Ref2 & 1 other
2L	6624890	2L_6624890_SNP [dm3] 2L_6624890_SNP [dm6]	A	G	4.006e^-4	0.991	SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F	TF binding site mE1_TFBS_inv
3R	15175493	3R_15175493_SNP [dm3] 3R_19349771_SNP [dm6]	A	T	4.007e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_sens
2R	9053593	2R_9053593_SNP [dm3] 2R_13166088_SNP [dm6]	C	A	4.013e^-4	0.991	INTRON GLaz
2L	6933760	2L_6933760_SNP [dm3] 2L_6933760_SNP [dm6]	C	T	4.023e^-4	0.991	SYNONYMOUS_CODING CG18304	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	18391259	2L_18391259_SNP [dm3] 2L_18391259_SNP [dm6]	G	A	4.027e^-4	0.991	SYNONYMOUS_CODING Fas3 DOWNSTREAM Fas3 INTRON Fas3
2R	14552867	2R_14552867_SNP [dm3] 2R_18665362_SNP [dm6]	G	A	4.027e^-4	0.991	NON_SYNONYMOUS_CODING CG33136	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18362879	2L_18362879_SNP [dm3] 2L_18362879_SNP [dm6]	C	T	4.030e^-4	0.991	INTRON Fas3
3R	8935804	3R_8935804_SNP [dm3] 3R_13110082_SNP [dm6]	T	C	4.046e^-4	0.991	INTRON timeout
3R	21809814	3R_21809814_SNP [dm3] 3R_25984092_SNP [dm6]	G	A	4.059e^-4	0.991	SYNONYMOUS_CODING Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_sens
2R	18777877	2R_18777877_SNP [dm3] 2R_22890354_SNP [dm6]	A	G	4.060e^-4	0.991	SYNONYMOUS_CODING MED23	TF binding site mE1_TFBS_cad
3L	8463771	3L_8463771_SNP [dm3] 3L_8470671_SNP [dm6]	T	C	4.067e^-4	0.991	INTRON Gug
2R	8313969	2R_8313969_SNP [dm3] 2R_12426464_SNP [dm6]	T	C	4.067e^-4	0.991	SPLICE_SITE_REGION CG8525 SYNONYMOUS_CODING CG8525 DOWNSTREAM CG13154	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	25309058	3R_25309058_SNP [dm3] 3R_29483336_SNP [dm6]	C	T	4.068e^-4	0.991	SYNONYMOUS_CODING Ptp99A	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	7768125	3L_7768125_INS [dm3] 3L_7775025_INS [dm6]	A	AA	4.070e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
2L	19885784	2L_19885784_SNP [dm3] 2L_19885784_SNP [dm6]	C	A	4.074e^-4	0.991	INTRON sick	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	6745032	2R_6745032_SNP [dm3] 2R_10857527_SNP [dm6]	T	A	4.092e^-4	0.991	INTRON CG30015
2R	4499537	2R_4499537_SNP [dm3] 2R_8612032_SNP [dm6]	T	C	4.125e^-4	0.991	NON_SYNONYMOUS_CODING CG8642 UTR_3_PRIME rgr DOWNSTREAM rgr
3L	22874555	3L_22874555_SNP [dm3] 3L_22881455_SNP [dm6]	A	T	4.126e^-4	0.991	DOWNSTREAM Ssl1 INTRON slif
3L	3075348	3L_3075348_SNP [dm3] 3L_3075348_SNP [dm6]	C	A	4.132e^-4	0.991	INTRON CG11486	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	3264191	2L_3264191_SNP [dm3] 2L_3264191_SNP [dm6]	G	A	4.139e^-4	0.991	EXON CR45706	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	17774038	3L_17774038_SNP [dm3] 3L_17780938_SNP [dm6]	T	C	4.145e^-4	0.991	INTERGENIC
2R	6309469	2R_6309469_SNP [dm3] 2R_10421964_SNP [dm6]	T	G	4.146e^-4	0.991	UTR_5_PRIME CG33474 UPSTREAM CG11825 & 1 other INTRON CG11825	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_zfh1
2R	8932084	2R_8932084_DEL [dm3] 2R_13044579_DEL [dm6]	AAGTTTAAAGTCAATT...	A	4.162e^-4	0.991	DOWNSTREAM CG13323 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3L	6550161	3L_6550161_SNP [dm3] 3L_6557061_SNP [dm6]	A	T	4.166e^-4	0.991	INTRON CG18769
2R	6289513	2R_6289513_SNP [dm3] 2R_10402008_SNP [dm6]	C	T	4.166e^-4	0.991	INTRON CG42732
3L	7774621	3L_7774621_SNP [dm3] 3L_7781521_SNP [dm6]	T	C	4.173e^-4	0.991	INTRON CG32369	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	2606813	2L_2606813_SNP [dm3] 2L_2606813_SNP [dm6]	A	G	4.173e^-4	0.991	INTERGENIC
2R	11707990	2R_11707990_SNP [dm3] 2R_15820485_SNP [dm6]	G	A	4.177e^-4	0.991	INTRON tun & 1 other
X	19992107	X_19992107_SNP [dm3] X_20098074_SNP [dm6]	C	T	4.193e^-4	0.991	INTERGENIC
3R	20931128	3R_20931128_SNP [dm3] 3R_25105406_SNP [dm6]	G	C	4.195e^-4	0.991	NON_SYNONYMOUS_CODING CG34027
3R	9489298	3R_9489298_SNP [dm3] 3R_13663576_SNP [dm6]	C	G	4.195e^-4	0.991	UTR_3_PRIME B52 INTRON B52
3R	4020139	3R_4020139_SNP [dm3] 3R_8194417_SNP [dm6]	G	T	4.197e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd
X	6348386	X_6348386_SNP [dm3] X_6454353_SNP [dm6]	A	G	4.201e^-4	0.991	INTRON CG42340
2L	2111864	2L_2111864_SNP [dm3] 2L_2111864_SNP [dm6]	C	G	4.230e^-4	0.991	INTERGENIC
3L	7647667	3L_7647667_SNP [dm3] 3L_7654567_SNP [dm6]	T	G	4.232e^-4	0.991	UTR_5_PRIME CG7492 DOWNSTREAM Ank2 INTRON CG32373	TF binding site BDTNP1_TFBS_dl
2L	12625355	2L_12625355_SNP [dm3] 2L_12625355_SNP [dm6]	A	C	4.234e^-4	0.991	INTRON Ref2 & 1 other	TF binding site mE1_TFBS_cad
3L	6465087	3L_6465087_SNP [dm3] 3L_6471987_SNP [dm6]	C	G	4.236e^-4	0.991	INTRON CG42747	TF binding site BDTNP1_TFBS_twi
2L	4221899	2L_4221899_SNP [dm3] 2L_4221899_SNP [dm6]	G	C	4.252e^-4	0.991	UPSTREAM ft INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Stat92E mE1_TFBS_Trl
3R	25394905	3R_25394905_SNP [dm3] 3R_29569183_SNP [dm6]	T	A	4.257e^-4	0.991	INTERGENIC
X	15456292	X_15456292_SNP [dm3] X_15562259_SNP [dm6]	A	G	4.259e^-4	0.991	INTERGENIC
X	22181851	X_22181851_SNP [dm3] X_22780015_SNP [dm6]	G	T	4.260e^-4	0.991	INTRON CR44997
3R	25493666	3R_25493666_SNP [dm3] 3R_29667944_SNP [dm6]	A	G	4.271e^-4	0.991	SPLICE_SITE_REGION ppk20 INTRON ppk20	TF binding site mE1_TFBS_cad
2R	15122125	2R_15122125_SNP [dm3] 2R_19234620_SNP [dm6]	C	T	4.274e^-4	0.991	INTRON cora
2L	848353	2L_848353_SNP [dm3] 2L_848353_SNP [dm6]	T	A	4.282e^-4	0.991	INTRON drongo	TF binding site mE1_TFBS_sens
3R	25320818	3R_25320818_SNP [dm3] 3R_29495096_SNP [dm6]	G	C	4.296e^-4	0.991	UTR_5_PRIME CG2010 DOWNSTREAM Diedel	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	11555634	3L_11555634_INS [dm3] 3L_11562534_INS [dm6]	A	ATTAA	4.302e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	16227688	2L_16227688_SNP [dm3] 2L_16227688_SNP [dm6]	G	A	4.304e^-4	0.991	INTERGENIC
2L	7759877	2L_7759877_SNP [dm3] 2L_7759877_SNP [dm6]	G	A	4.310e^-4	0.991	INTRON CG7196
3R	21073256	3R_21073256_SNP [dm3] 3R_25247534_SNP [dm6]	G	A	4.311e^-4	0.991	UPSTREAM Nup37 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_Ubx
X	14608742	X_14608742_SNP [dm3] X_14714709_SNP [dm6]	T	A	4.312e^-4	0.991	INTRON NetB
3L	7254016	3L_7254016_SNP [dm3] 3L_7260916_SNP [dm6]	A	G	4.312e^-4	0.991	INTRON CG14830
2R	16583443	2R_16583443_SNP [dm3] 2R_20695938_SNP [dm6]	A	C	4.312e^-4	0.991	INTERGENIC
3L	10539230	3L_10539230_SNP [dm3] 3L_10546130_SNP [dm6]	A	T	4.312e^-4	0.991	INTRON A2bp1
3R	15192018	3R_15192018_SNP [dm3] 3R_19366296_SNP [dm6]	T	G	4.312e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	19903674	2L_19903674_SNP [dm3] 2L_19903674_SNP [dm6]	T	C	4.322e^-4	0.991	INTRON sick
2L	12575953	2L_12575953_SNP [dm3] 2L_12575953_SNP [dm6]	T	A	4.328e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1285481	2L_1285481_SNP [dm3] 2L_1285481_SNP [dm6]	T	G	4.334e^-4	0.991	INTRON robo3
2R	15084768	2R_15084768_SNP [dm3] 2R_19197263_SNP [dm6]	G	T	4.337e^-4	0.991	INTRON hppy
3R	4292814	3R_4292814_SNP [dm3] 3R_8467092_SNP [dm6]	A	G	4.344e^-4	0.991	INTRON CG45263	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi
X	15108093	X_15108093_SNP [dm3] X_15214060_SNP [dm6]	A	G	4.345e^-4	0.991	INTERGENIC
3R	24877220	3R_24877220_SNP [dm3] 3R_29051498_SNP [dm6]	T	C	4.349e^-4	0.991	SPLICE_SITE_REGION CG11841 DOWNSTREAM CG11837 INTRON CG11841	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19054726	X_19054726_SNP [dm3] X_19160693_SNP [dm6]	G	C	4.349e^-4	0.991	INTRON RhoGAP18B	TF binding site mE1_TFBS_HSA
2L	6742951	2L_6742951_SNP [dm3] 2L_6742951_SNP [dm6]	G	A	4.351e^-4	0.991	UTR_5_PRIME CG11221
2L	4210328	2L_4210328_SNP [dm3] 2L_4210328_SNP [dm6]	G	A	4.353e^-4	0.991	INTRON ft	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11909028	3L_11909028_SNP [dm3] 3L_11915928_SNP [dm6]	G	A	4.355e^-4	0.991	INTRON CG44837
2L	12616373	2L_12616373_INS [dm3] 2L_12616373_INS [dm6]	A	AATGTTGATATA...	4.363e^-4	0.991	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
X	22231696	X_22231696_SNP [dm3] X_22829860_SNP [dm6]	T	G	4.372e^-4	0.991	INTRON fog	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_tll BDTNP1_TFBS_twi
2R	12410063	2R_12410063_SNP [dm3] 2R_16522558_SNP [dm6]	C	T	4.372e^-4	0.991	INTRON Sema-2a	TF binding site BDTNP1_TFBS_dl
3R	21291643	3R_21291643_SNP [dm3] 3R_25465921_SNP [dm6]	C	A	4.381e^-4	0.991	INTRON Fur1
2L	6085910	2L_6085910_SNP [dm3] 2L_6085910_SNP [dm6]	T	A	4.381e^-4	0.991	INTRON Kr-h1	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	11032538	3L_11032538_SNP [dm3] 3L_11039438_SNP [dm6]	T	C	4.385e^-4	0.991	INTRON CG43693
2L	18436296	2L_18436296_SNP [dm3] 2L_18436296_SNP [dm6]	G	A	4.389e^-4	0.991	INTERGENIC
3L	8447007	3L_8447007_SNP [dm3] 3L_8453907_SNP [dm6]	T	C	4.392e^-4	0.991	INTRON Gug	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2L	18468459	2L_18468459_SNP [dm3] 2L_18468459_SNP [dm6]	T	C	4.393e^-4	0.991	INTRON let-7-C	TF binding site mE1_TFBS_Trl
2L	2350586	2L_2350586_SNP [dm3] 2L_2350586_SNP [dm6]	A	C	4.402e^-4	0.991	INTRON CG9967 & 1 other
3R	26210219	3R_26210219_SNP [dm3] 3R_30384497_SNP [dm6]	A	G	4.411e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_prd mE1_TFBS_Kr
3L	15889026	3L_15889026_SNP [dm3] 3L_15895926_SNP [dm6]	T	C	4.412e^-4	0.991	INTRON pHCl
2R	11594642	2R_11594642_SNP [dm3] 2R_15707137_SNP [dm6]	C	G	4.418e^-4	0.991	INTERGENIC
2R	12196928	2R_12196928_SNP [dm3] 2R_16309423_SNP [dm6]	A	T	4.433e^-4	0.991	UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3L	12698306	3L_12698306_SNP [dm3] 3L_12705206_SNP [dm6]	T	A	4.434e^-4	0.991	INTRON mirr
3L	18593309	3L_18593309_SNP [dm3] 3L_18600209_SNP [dm6]	T	G	4.437e^-4	0.991	UTR_3_PRIME CG4174 & 1 other
2R	1675108	2R_1675108_SNP [dm3] 2R_5787603_SNP [dm6]	T	A	4.443e^-4	0.991	INTERGENIC
3L	4515917	3L_4515917_SNP [dm3] 3L_4515917_SNP [dm6]	A	G	4.446e^-4	0.991	INTRON Tie	TF binding site mE1_TFBS_inv
3L	11121519	3L_11121519_SNP [dm3] 3L_11128419_SNP [dm6]	G	T	4.448e^-4	0.991	UPSTREAM CG42575 INTRON CG42575
2L	17331862	2L_17331862_SNP [dm3] 2L_17331862_SNP [dm6]	A	G	4.449e^-4	0.991	INTERGENIC
3R	6215439	3R_6215439_SNP [dm3] 3R_10389717_SNP [dm6]	A	T	4.454e^-4	0.991	INTRON cwo
X	8000370	X_8000370_SNP [dm3] X_8106337_SNP [dm6]	T	A	4.456e^-4	0.991	UPSTREAM Gclc INTRON Gclc
2R	8849439	2R_8849439_SNP [dm3] 2R_12961934_SNP [dm6]	C	T	4.459e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
2L	1305054	2L_1305054_SNP [dm3] 2L_1305054_SNP [dm6]	G	T	4.460e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	8691604	3R_8691604_SNP [dm3] 3R_12865882_SNP [dm6]	C	T	4.466e^-4	0.991	INTERGENIC
3L	11570764	3L_11570764_SNP [dm3] 3L_11577664_SNP [dm6]	C	A	4.467e^-4	0.991	UPSTREAM CG33489 & 1 other DOWNSTREAM CG33270 INTERGENIC
2L	7759939	2L_7759939_SNP [dm3] 2L_7759939_SNP [dm6]	C	G	4.477e^-4	0.991	INTRON CG7196
2L	18591567	2L_18591567_SNP [dm3] 2L_18591567_SNP [dm6]	G	A	4.487e^-4	0.991	INTRON CG15160	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_sbb
3L	622561	3L_622561_DEL [dm3] 3L_622561_DEL [dm6]	TT	C	4.487e^-4	0.991	UPSTREAM CG43337 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Stat92E
2R	18877179	2R_18877179_SNP [dm3] 2R_22989656_SNP [dm6]	C	A	4.489e^-4	0.991	INTRON twi	TF binding site mE1_TFBS_chinmo
3R	26277599	3R_26277599_SNP [dm3] 3R_30451877_SNP [dm6]	A	T	4.494e^-4	0.991	INTRON aralar1
2R	6064085	2R_6064085_SNP [dm3] 2R_10176580_SNP [dm6]	T	C	4.502e^-4	0.991	INTRON KCNQ
2R	6295968	2R_6295968_SNP [dm3] 2R_10408463_SNP [dm6]	G	T	4.516e^-4	0.991	DOWNSTREAM CG43177 & 1 other INTRON CG42732
3L	5435317	3L_5435317_SNP [dm3] 3L_5442217_SNP [dm6]	G	T	4.518e^-4	0.991	UTR_3_PRIME CG34391
2R	6845609	2R_6845609_INS [dm3] 2R_10958104_INS [dm6]	A	AGC	4.519e^-4	0.991	INTERGENIC
3R	19624899	3R_19624899_SNP [dm3] 3R_23799177_SNP [dm6]	C	G	4.522e^-4	0.991	NON_SYNONYMOUS_CODING mbc	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	18220691	3L_18220691_SNP [dm3] 3L_18227591_SNP [dm6]	T	C	4.523e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
2L	17124219	2L_17124219_SNP [dm3] 2L_17124219_SNP [dm6]	T	C	4.542e^-4	0.991	NON_SYNONYMOUS_CODING CG31784
2L	8449982	2L_8449982_SNP [dm3] 2L_8449982_SNP [dm6]	T	A	4.557e^-4	0.991	UTR_3_PRIME fu12 UPSTREAM U26
2L	7522417	2L_7522417_INS [dm3] 2L_7522417_INS [dm6]	T	TAT	4.566e^-4	0.991	INTRON RapGAP1	TF binding site mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_HSA
3L	5881242	3L_5881242_DEL [dm3] 3L_5888142_DEL [dm6]	GTATAAATATA...	G	4.572e^-4	0.991	INTERGENIC
2R	12366385	2R_12366385_SNP [dm3] 2R_16478880_SNP [dm6]	C	T	4.573e^-4	0.991	INTERGENIC
2L	12415004	2L_12415004_SNP [dm3] 2L_12415004_SNP [dm6]	C	T	4.579e^-4	0.991	INTRON vir-1
2R	11707986	2R_11707986_SNP [dm3] 2R_15820481_SNP [dm6]	A	G	4.587e^-4	0.991	INTRON tun & 1 other
X	11661543	X_11661543_SNP [dm3] X_11767510_SNP [dm6]	T	C	4.596e^-4	0.991	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2L	12616369	2L_12616369_INS [dm3] 2L_12616369_INS [dm6]	T	TCACTTAAAT	4.597e^-4	0.991	INTRON Ref2 & 1 other	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_prd BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr
3L	5488356	3L_5488356_SNP [dm3] 3L_5495256_SNP [dm6]	G	A	4.599e^-4	0.991	UPSTREAM CR44520 INTERGENIC
2L	12621211	2L_12621211_SNP [dm3] 2L_12621211_SNP [dm6]	A	T	4.600e^-4	0.991	INTRON Ref2 & 1 other
2R	12366169	2R_12366169_SNP [dm3] 2R_16478664_SNP [dm6]	T	G	4.609e^-4	0.991	INTERGENIC
2R	7022741	2R_7022741_SNP [dm3] 2R_11135236_SNP [dm6]	G	T	4.622e^-4	0.991	UPSTREAM BBS4 INTERGENIC
3L	20507533	3L_20507533_SNP [dm3] 3L_20514433_SNP [dm6]	G	A	4.629e^-4	0.991	DOWNSTREAM CG5059 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_zfh1
3L	11555596	3L_11555596_SNP [dm3] 3L_11562496_SNP [dm6]	T	A	4.630e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
2L	1362841	2L_1362841_SNP [dm3] 2L_1362841_SNP [dm6]	T	C	4.639e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3R	24875112	3R_24875112_SNP [dm3] 3R_29049390_SNP [dm6]	G	A	4.645e^-4	0.991	UPSTREAM CG11837 DOWNSTREAM Pkc98E INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	4917447	2L_4917447_SNP [dm3] 2L_4917447_SNP [dm6]	G	C	4.650e^-4	0.991	INTRON hoe1
2L	9947874	2L_9947874_SNP [dm3] 2L_9947874_SNP [dm6]	T	A	4.651e^-4	0.991	UPSTREAM CG5853 INTERGENIC
2L	15879983	2L_15879983_SNP [dm3] 2L_15879983_SNP [dm6]	C	A	4.652e^-4	0.991	UTR_5_PRIME CG7653
2R	15577805	2R_15577805_SNP [dm3] 2R_19690300_SNP [dm6]	T	G	4.655e^-4	0.991	UPSTREAM CG15126 INTERGENIC
2L	16998792	2L_16998792_SNP [dm3] 2L_16998792_SNP [dm6]	T	G	4.670e^-4	0.991	DOWNSTREAM CR45356 EXON CR45357
3R	2018626	3R_2018626_SNP [dm3] 3R_6192904_SNP [dm6]	A	C	4.675e^-4	0.991	INTRON NPFR
2R	12196925	2R_12196925_SNP [dm3] 2R_16309420_SNP [dm6]	A	G	4.675e^-4	0.991	START_GAINED Nox UTR_5_PRIME Nox	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
3R	4073500	3R_4073500_SNP [dm3] 3R_8247778_SNP [dm6]	G	A	4.680e^-4	0.991	NON_SYNONYMOUS_CODING CG18749 UTR_3_PRIME CG33722 UPSTREAM CG15864	TF binding site mE1_TFBS_HSA
3R	15168624	3R_15168624_SNP [dm3] 3R_19342902_SNP [dm6]	C	G	4.681e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi
X	841810	X_841810_SNP [dm3] X_947777_SNP [dm6]	T	C	4.682e^-4	0.991	UPSTREAM CG3699 DOWNSTREAM CG3690 INTERGENIC
3L	7768118	3L_7768118_SNP [dm3] 3L_7775018_SNP [dm6]	A	G	4.710e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs
3L	2994905	3L_2994905_SNP [dm3] 3L_2994905_SNP [dm6]	A	G	4.710e^-4	0.991	UPSTREAM CG2113 INTERGENIC
3R	22825891	3R_22825891_SNP [dm3] 3R_27000169_SNP [dm6]	A	G	4.714e^-4	0.991	SYNONYMOUS_CODING CG31077 INTRON RYa-R	TF binding site mE1_TFBS_sens
3L	17910845	3L_17910845_SNP [dm3] 3L_17917745_SNP [dm6]	C	T	4.715e^-4	0.991	INTERGENIC
2R	7021995	2R_7021995_INS [dm3] 2R_11134490_INS [dm6]	C	TT	4.716e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_HSA mE1_TFBS_zfh1
2L	1577616	2L_1577616_SNP [dm3] 2L_1577616_SNP [dm6]	C	G	4.716e^-4	0.991	INTRON haf
3R	21291647	3R_21291647_SNP [dm3] 3R_25465925_SNP [dm6]	C	A	4.719e^-4	0.991	INTRON Fur1
2R	8514247	2R_8514247_SNP [dm3] 2R_12626742_SNP [dm6]	A	T	4.721e^-4	0.991	INTRON CG17760
3L	17905094	3L_17905094_SNP [dm3] 3L_17911994_SNP [dm6]	G	C	4.740e^-4	0.991	SYNONYMOUS_CODING CG5290	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	1577441	2L_1577441_SNP [dm3] 2L_1577441_SNP [dm6]	A	T	4.741e^-4	0.991	INTRON haf
3L	8592908	3L_8592908_SNP [dm3] 3L_8599808_SNP [dm6]	A	T	4.742e^-4	0.991	DOWNSTREAM CG43078 INTRON Nelf-E
3L	8124679	3L_8124679_SNP [dm3] 3L_8131579_SNP [dm6]	C	T	4.749e^-4	0.991	UTR_3_PRIME CdsA & 1 other
3L	11552381	3L_11552381_SNP [dm3] 3L_11559281_SNP [dm6]	G	A	4.756e^-4	0.991	UPSTREAM Mob2 INTRON Mob2	TF binding site mE1_TFBS_cad
2R	6167615	2R_6167615_SNP [dm3] 2R_10280110_SNP [dm6]	A	C	4.766e^-4	0.991	NON_SYNONYMOUS_CODING CAP INTRON CAP
3R	10890748	3R_10890748_SNP [dm3] 3R_15065026_SNP [dm6]	A	T	4.771e^-4	0.991	INTRON dpr9
3R	25360375	3R_25360375_SNP [dm3] 3R_29534653_SNP [dm6]	C	T	4.774e^-4	0.991	EXON CR43613	TF binding site mE1_TFBS_chinmo
3L	22874558	3L_22874558_SNP [dm3] 3L_22881458_SNP [dm6]	T	A	4.786e^-4	0.991	DOWNSTREAM Ssl1 INTRON slif
2L	19903647	2L_19903647_SNP [dm3] 2L_19903647_SNP [dm6]	A	G	4.789e^-4	0.991	INTRON sick
3L	15900739	3L_15900739_SNP [dm3] 3L_15907639_SNP [dm6]	C	T	4.809e^-4	0.991	INTRON sff
2L	5549568	2L_5549568_SNP [dm3] 2L_5549568_SNP [dm6]	G	A	4.816e^-4	0.991	UTR_3_PRIME Oscillin DOWNSTREAM CG14014 & 1 other
2L	11248465	2L_11248465_SNP [dm3] 2L_11248465_SNP [dm6]	G	T	4.820e^-4	0.991	INTRON ab	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	5559963	3R_5559963_SNP [dm3] 3R_9734241_SNP [dm6]	T	A	4.832e^-4	0.991	UTR_3_PRIME CG12950 UPSTREAM alphaTub85E DOWNSTREAM CG12950
X	16445801	X_16445801_SNP [dm3] X_16551768_SNP [dm6]	C	A	4.834e^-4	0.991	INTRON Arp2
3L	5365487	3L_5365487_INS [dm3] 3L_5372387_INS [dm6]	A	AGTA	4.842e^-4	0.991	UPSTREAM CR44516 INTERGENIC
X	8749176	X_8749176_SNP [dm3] X_8855143_SNP [dm6]	T	C	4.847e^-4	0.991	INTRON CG12075
3R	2788941	3R_2788941_SNP [dm3] 3R_6963219_SNP [dm6]	A	G	4.848e^-4	0.991	INTRON Antp	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	584608	2L_584608_SNP [dm3] 2L_584608_SNP [dm6]	A	C	4.849e^-4	0.991	INTRON Gsc	TF binding site BDTNP1_TFBS_dl
2R	15577801	2R_15577801_SNP [dm3] 2R_19690296_SNP [dm6]	C	T	4.861e^-4	0.991	UPSTREAM CG15126 INTERGENIC
3R	22810817	3R_22810817_SNP [dm3] 3R_26985095_SNP [dm6]	A	G	4.865e^-4	0.991	SYNONYMOUS_CODING CG14253 DOWNSTREAM CG31075	TF binding site mE1_TFBS_inv
X	20618703	X_20618703_SNP [dm3] X_20747676_SNP [dm6]	A	T	4.865e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	10631978	3R_10631978_DEL [dm3] 3R_14806256_DEL [dm6]	CTC	C	4.866e^-4	0.991	UTR_3_PRIME btsz DOWNSTREAM btsz	TF binding site BDTNP1_TFBS_hb
3R	13462728	3R_13462728_SNP [dm3] 3R_17637006_SNP [dm6]	T	G	4.876e^-4	0.991	INTRON CG43175
3R	8670845	3R_8670845_SNP [dm3] 3R_12845123_SNP [dm6]	G	T	4.881e^-4	0.991	INTRON beat-Va
3R	15404766	3R_15404766_SNP [dm3] 3R_19579044_SNP [dm6]	G	A	4.888e^-4	0.991	INTRON Dys
2L	15880323	2L_15880323_SNP [dm3] 2L_15880323_SNP [dm6]	T	C	4.908e^-4	0.991	UPSTREAM CG7653 INTERGENIC
3L	2617987	3L_2617987_DEL [dm3] 3L_2617987_DEL [dm6]	TCCT	T	4.914e^-4	0.991	INTRON Pxn
3R	24162543	3R_24162543_SNP [dm3] 3R_28336821_SNP [dm6]	G	T	4.915e^-4	0.991	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA
2L	10790743	2L_10790743_SNP [dm3] 2L_10790743_SNP [dm6]	C	A	4.918e^-4	0.991	UTR_3_PRIME CG31870 INTRON CG31869 & 1 other
2R	18862770	2R_18862770_SNP [dm3] 2R_22975247_SNP [dm6]	A	C	4.936e^-4	0.991	INTERGENIC
3L	11555569	3L_11555569_DEL [dm3] 3L_11562469_DEL [dm6]	TTGACAATCAGCAGCTTGGT...	T	4.944e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3R	26210851	3R_26210851_SNP [dm3] 3R_30385129_SNP [dm6]	C	T	4.947e^-4	0.991	DOWNSTREAM Fer1HCH INTERGENIC	TF binding site mE1_TFBS_Kr
3L	17791124	3L_17791124_SNP [dm3] 3L_17798024_SNP [dm6]	T	C	4.950e^-4	0.991	UTR_3_PRIME NUCB1 UPSTREAM CG42816	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad
3R	21809465	3R_21809465_DEL [dm3] 3R_25983743_DEL [dm6]	CTCCATTCTCTATT...	C	4.965e^-4	0.991	INTRON Nf1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
3R	8961157	3R_8961157_SNP [dm3] 3R_13135435_SNP [dm6]	C	T	4.967e^-4	0.991	INTRON timeout & 2 others
3L	7773267	3L_7773267_SNP [dm3] 3L_7780167_SNP [dm6]	C	T	4.970e^-4	0.991	SYNONYMOUS_CODING CG32369	TF binding site mE1_TFBS_cad
2R	11707806	2R_11707806_SNP [dm3] 2R_15820301_SNP [dm6]	A	G	4.971e^-4	0.991	SYNONYMOUS_CODING CG33465 INTRON tun
3R	24371255	3R_24371255_SNP [dm3] 3R_28545533_SNP [dm6]	A	C	4.972e^-4	0.991	UPSTREAM CG12413 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1
3R	15562781	3R_15562781_SNP [dm3] 3R_19737059_SNP [dm6]	T	A	4.972e^-4	0.991	INTRON GluClalpha
2R	6098451	2R_6098451_SNP [dm3] 2R_10210946_SNP [dm6]	A	G	4.990e^-4	0.991	INTRON Hr46 & 1 other	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Kr mE1_TFBS_Trl
3R	10915767	3R_10915767_DEL [dm3] 3R_15090045_DEL [dm6]	ATAGATTCAATTCTACA...	A	5.014e^-4	0.991	INTRON CG6966	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
3L	12122411	3L_12122411_SNP [dm3] 3L_12129311_SNP [dm6]	C	T	5.016e^-4	0.991	UPSTREAM Lsp2 DOWNSTREAM CG34241 INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	6726953	3L_6726953_SNP [dm3] 3L_6733853_SNP [dm6]	T	A	5.018e^-4	0.991	SYNONYMOUS_CODING dikar	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_sens
3R	15419202	3R_15419202_SNP [dm3] 3R_19593480_SNP [dm6]	T	A	5.020e^-4	0.991	INTRON Dys
3L	11780427	3L_11780427_SNP [dm3] 3L_11787327_SNP [dm6]	G	T	5.024e^-4	0.991	NON_SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3R	9553564	3R_9553564_SNP [dm3] 3R_13727842_SNP [dm6]	T	A	5.024e^-4	0.991	INTRON CG34383
X	20131332	X_20131332_SNP [dm3] X_20260306_SNP [dm6]	T	G	5.042e^-4	0.991	DOWNSTREAM CG42577 INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA mE1_TFBS_sens
X	19426874	X_19426874_SNP [dm3] X_19532841_SNP [dm6]	C	T	5.048e^-4	0.991	UTR_3_PRIME CG32532
2R	6618515	2R_6618515_SNP [dm3] 2R_10731010_SNP [dm6]	T	A	5.049e^-4	0.991	UTR_5_PRIME CG12338 UPSTREAM CG7220 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Ubx
3R	8892570	3R_8892570_SNP [dm3] 3R_13066848_SNP [dm6]	T	C	5.059e^-4	0.991	INTRON sim	TF binding site BDTNP1_TFBS_dl mE1_TFBS_kn mE1_TFBS_zfh1
2R	6140333	2R_6140333_SNP [dm3] 2R_10252828_SNP [dm6]	A	T	5.060e^-4	0.991	UPSTREAM Syb INTRON CG12913	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn
2R	5647729	2R_5647729_DEL [dm3] 2R_9760224_DEL [dm6]	AGATA	A	5.068e^-4	0.991	INTRON trpl
3R	24667789	3R_24667789_SNP [dm3] 3R_28842067_SNP [dm6]	C	G	5.068e^-4	0.991	INTRON Apc	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7417484	3L_7417484_SNP [dm3] 3L_7424384_SNP [dm6]	A	T	5.071e^-4	0.991	INTRON CG42458
3R	24851463	3R_24851463_SNP [dm3] 3R_29025741_SNP [dm6]	T	C	5.079e^-4	0.991	DOWNSTREAM eIF4E-6 INTRON CG14518	transposable element FlyBase
3L	15274246	3L_15274246_SNP [dm3] 3L_15281146_SNP [dm6]	G	A	5.104e^-4	0.991	INTERGENIC
2L	12619290	2L_12619290_SNP [dm3] 2L_12619290_SNP [dm6]	T	C	5.106e^-4	0.991	INTRON Ref2 & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_cad mE1_TFBS_Trl
3L	1726776	3L_1726776_SNP [dm3] 3L_1726776_SNP [dm6]	G	C	5.112e^-4	0.991	INTRON drpr
3L	8364786	3L_8364786_SNP [dm3] 3L_8371686_SNP [dm6]	T	G	5.134e^-4	0.991	UPSTREAM ImpE1 INTERGENIC
3L	12348112	3L_12348112_SNP [dm3] 3L_12355012_SNP [dm6]	G	C	5.135e^-4	0.991	INTERGENIC
2L	2091548	2L_2091548_SNP [dm3] 2L_2091548_SNP [dm6]	C	T	5.147e^-4	0.991	INTRON dpr3
2L	599315	2L_599315_SNP [dm3] 2L_599315_SNP [dm6]	C	T	5.147e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd
3L	11555669	3L_11555669_SNP [dm3] 3L_11562569_SNP [dm6]	T	A	5.148e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
X	20402948	X_20402948_SNP [dm3] X_20531921_SNP [dm6]	G	A	5.150e^-4	0.991	INTERGENIC
3L	17879110	3L_17879110_SNP [dm3] 3L_17886010_SNP [dm6]	T	A	5.153e^-4	0.991	UTR_3_PRIME CG16775 UPSTREAM CR42548
2L	14486199	2L_14486199_SNP [dm3] 2L_14486199_SNP [dm6]	G	A	5.155e^-4	0.991	EXON CR44731	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
X	2695636	X_2695636_SNP [dm3] X_2801603_SNP [dm6]	C	T	5.162e^-4	0.991	INTRON kirre
3R	24926154	3R_24926154_SNP [dm3] 3R_29100432_SNP [dm6]	A	G	5.167e^-4	0.991	SYNONYMOUS_CODING CG11873	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
X	20608264	X_20608264_SNP [dm3] X_20737237_SNP [dm6]	A	T	5.167e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da mE1_TFBS_Kr
3L	12865432	3L_12865432_SNP [dm3] 3L_12872332_SNP [dm6]	C	A	5.171e^-4	0.991	INTERGENIC
2L	11257579	2L_11257579_DEL [dm3] 2L_11257579_DEL [dm6]	AA	A	5.174e^-4	0.991	DOWNSTREAM ab INTRON ab
3R	10785340	3R_10785340_DEL [dm3] 3R_14959618_DEL [dm6]	TTAT	T	5.191e^-4	0.991	INTERGENIC
2R	13733463	2R_13733463_SNP [dm3] 2R_17845958_SNP [dm6]	G	A	5.212e^-4	0.991	UPSTREAM olf186-M INTRON olf186-F	TF binding site mE1_TFBS_Trl
2L	16825105	2L_16825105_SNP [dm3] 2L_16825105_SNP [dm6]	A	G	5.222e^-4	0.991	UTR_5_PRIME Cas INTRON mdy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA
3R	14032407	3R_14032407_SNP [dm3] 3R_18206685_SNP [dm6]	G	A	5.231e^-4	0.991	INTRON CG7985
2L	7761841	2L_7761841_SNP [dm3] 2L_7761841_SNP [dm6]	G	T	5.244e^-4	0.991	INTRON CG7196
3R	4587220	3R_4587220_SNP [dm3] 3R_8761498_SNP [dm6]	C	A	5.245e^-4	0.991	INTRON CG11768 & 1 other
3R	13649068	3R_13649068_SNP [dm3] 3R_17823346_SNP [dm6]	T	A	5.251e^-4	0.991	INTRON tinc	TF binding site mE1_TFBS_HSA
2R	4845064	2R_4845064_SNP [dm3] 2R_8957559_SNP [dm6]	A	T	5.254e^-4	0.991	INTRON babo	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	18747965	3R_18747965_SNP [dm3] 3R_22922243_SNP [dm6]	T	C	5.263e^-4	0.991	INTRON klg	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	24673723	3R_24673723_SNP [dm3] 3R_28848001_SNP [dm6]	A	G	5.274e^-4	0.991	INTRON spg
2R	8114682	2R_8114682_SNP [dm3] 2R_12227177_SNP [dm6]	G	A	5.281e^-4	0.991	UPSTREAM CG8854 INTRON CG8854
3L	11555458	3L_11555458_SNP [dm3] 3L_11562358_SNP [dm6]	A	T	5.284e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_sens mE1_TFBS_Ubx
3L	3714698	3L_3714698_SNP [dm3] 3L_3714698_SNP [dm6]	T	C	5.294e^-4	0.991	UTR_3_PRIME CG43089 DOWNSTREAM CG32264 & 1 other
3R	14064723	3R_14064723_SNP [dm3] 3R_18239001_SNP [dm6]	G	C	5.297e^-4	0.991	UTR_3_PRIME repo DOWNSTREAM CG7156	TF binding site mE1_TFBS_cad
2L	13447120	2L_13447120_SNP [dm3] 2L_13447120_SNP [dm6]	T	C	5.319e^-4	0.991	DOWNSTREAM Hsp60D INTRON CG42784
3R	16286067	3R_16286067_SNP [dm3] 3R_20460345_SNP [dm6]	C	G	5.331e^-4	0.991	INTRON Gfrl
2L	18474654	2L_18474654_SNP [dm3] 2L_18474654_SNP [dm6]	T	G	5.352e^-4	0.991	INTRON CG10283
2L	12621144	2L_12621144_SNP [dm3] 2L_12621144_SNP [dm6]	C	T	5.358e^-4	0.991	INTRON Ref2 & 1 other
3R	23303005	3R_23303005_SNP [dm3] 3R_27477283_SNP [dm6]	T	G	5.361e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	7484552	2L_7484552_SNP [dm3] 2L_7484552_SNP [dm6]	T	A	5.364e^-4	0.991	INTRON Ziz	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
2L	9938652	2L_9938652_SNP [dm3] 2L_9938652_SNP [dm6]	G	A	5.365e^-4	0.991	SYNONYMOUS_CODING Apf UPSTREAM CG4619 & 1 other EXON CR45007	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_sens mE1_TFBS_Ubx
X	9371261	X_9371261_SNP [dm3] X_9477228_SNP [dm6]	T	A	5.367e^-4	0.991	INTRON mgl
2L	11257101	2L_11257101_SNP [dm3] 2L_11257101_SNP [dm6]	C	A	5.372e^-4	0.991	UTR_3_PRIME ab INTRON ab
3L	16868166	3L_16868166_SNP [dm3] 3L_16875066_SNP [dm6]	A	C	5.374e^-4	0.991	INTRON Lmpt
2L	16011337	2L_16011337_SNP [dm3] 2L_16011337_SNP [dm6]	T	C	5.375e^-4	0.991	INTRON beat-Ic
X	483059	X_483059_SNP [dm3] X_589026_SNP [dm6]	C	T	5.382e^-4	0.991	INTRON vnd & 1 other	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	18389163	2L_18389163_SNP [dm3] 2L_18389163_SNP [dm6]	C	T	5.402e^-4	0.991	UTR_3_PRIME Fas3 INTRON Fas3
2R	13255788	2R_13255788_DEL [dm3] 2R_17368283_DEL [dm6]	AA	A	5.407e^-4	0.991	INTRON mbl	TF binding site BDTNP1_TFBS_dl
2R	11707578	2R_11707578_SNP [dm3] 2R_15820073_SNP [dm6]	G	A	5.421e^-4	0.991	SYNONYMOUS_CODING CG33465 INTRON tun
2L	9784495	2L_9784495_SNP [dm3] 2L_9784495_SNP [dm6]	T	C	5.425e^-4	0.991	INTRON IP3K1
3R	26298798	3R_26298798_SNP [dm3] 3R_30473076_SNP [dm6]	C	T	5.428e^-4	0.991	INTRON PH4alphaEFB
2R	6718347	2R_6718347_SNP [dm3] 2R_10830842_SNP [dm6]	T	C	5.429e^-4	0.991	INTRON CG12344	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	9488254	3R_9488254_SNP [dm3] 3R_13662532_SNP [dm6]	C	A	5.436e^-4	0.991	INTRON B52	TF binding site BDTNP1_TFBS_dl
2R	6263551	2R_6263551_SNP [dm3] 2R_10376046_SNP [dm6]	C	T	5.444e^-4	0.991	DOWNSTREAM Ir47b INTRON CG42732
3R	15884873	3R_15884873_SNP [dm3] 3R_20059151_SNP [dm6]	A	C	5.445e^-4	0.991	UTR_3_PRIME mdlc INTRON CG4390	TF binding site mE1_TFBS_bab1
3L	8593040	3L_8593040_SNP [dm3] 3L_8599940_SNP [dm6]	A	G	5.466e^-4	0.991	SYNONYMOUS_CODING Nelf-E DOWNSTREAM CG43078
2L	10790713	2L_10790713_SNP [dm3] 2L_10790713_SNP [dm6]	C	A	5.473e^-4	0.991	SPLICE_SITE_REGION CG31870 UTR_3_PRIME CG31870 INTRON CG31869 & 1 other
3R	6531872	3R_6531872_SNP [dm3] 3R_10706150_SNP [dm6]	T	A	5.488e^-4	0.991	SYNONYMOUS_CODING CG31467 UPSTREAM CG14684	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
3R	13944454	3R_13944454_SNP [dm3] 3R_18118732_SNP [dm6]	G	A	5.489e^-4	0.991	INTRON sr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	23117682	3R_23117682_SNP [dm3] 3R_27291960_SNP [dm6]	G	C	5.490e^-4	0.991	UTR_5_PRIME CG3348 DOWNSTREAM Hmu
X	18881885	X_18881885_SNP [dm3] X_18987852_SNP [dm6]	T	C	5.492e^-4	0.991	INTRON CG43759
2R	7274455	2R_7274455_SNP [dm3] 2R_11386950_SNP [dm6]	A	G	5.497e^-4	0.991	SYNONYMOUS_CODING sprt DOWNSTREAM CG30022	TF binding site mE1_TFBS_cad
2R	17833369	2R_17833369_SNP [dm3] 2R_21945864_SNP [dm6]	G	A	5.497e^-4	0.991	UTR_3_PRIME Fili
2R	14190450	2R_14190450_SNP [dm3] 2R_18302945_SNP [dm6]	C	T	5.501e^-4	0.991	UTR_3_PRIME CG14505 INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
3R	10280178	3R_10280178_SNP [dm3] 3R_14454456_SNP [dm6]	A	G	5.507e^-4	0.991	INTRON cv-c	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_prd mE1_TFBS_HSA
X	16533123	X_16533123_SNP [dm3] X_16639090_SNP [dm6]	G	T	5.510e^-4	0.991	UTR_3_PRIME RpS19a DOWNSTREAM SmG & 1 other	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
2L	21384375	2L_21384375_SNP [dm3] 2L_21384375_SNP [dm6]	T	C	5.513e^-4	0.991	INTRON nrv3
3L	11544628	3L_11544628_SNP [dm3] 3L_11551528_SNP [dm6]	T	A	5.517e^-4	0.991	INTRON Mob2	TF binding site mE1_TFBS_D mE1_TFBS_HSA
2L	7555253	2L_7555253_DEL [dm3] 2L_7555253_DEL [dm6]	AC	A	5.527e^-4	0.991	INTRON RapGAP1
3L	11780422	3L_11780422_SNP [dm3] 3L_11787322_SNP [dm6]	T	C	5.527e^-4	0.991	SYNONYMOUS_CODING Pi3K68D	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	9572646	X_9572646_SNP [dm3] X_9678613_SNP [dm6]	C	T	5.541e^-4	0.991	SYNONYMOUS_CODING nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA transposable element FlyBase
3R	25392138	3R_25392138_SNP [dm3] 3R_29566416_SNP [dm6]	T	A	5.543e^-4	0.991	INTERGENIC
X	16918736	X_16918736_INS [dm3] X_17024703_INS [dm6]	T	TT	5.544e^-4	0.991	DOWNSTREAM CG43997 INTRON CG45002
2L	6624533	2L_6624533_SNP [dm3] 2L_6624533_SNP [dm6]	A	G	5.548e^-4	0.991	SYNONYMOUS_CODING CG34345 DOWNSTREAM Oatp26F
2L	7964017	2L_7964017_SNP [dm3] 2L_7964017_SNP [dm6]	A	C	5.556e^-4	0.991	INTRON Snoo
3L	5874729	3L_5874729_SNP [dm3] 3L_5881629_SNP [dm6]	T	C	5.561e^-4	0.991	UPSTREAM CG13287 INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
2R	6925668	2R_6925668_SNP [dm3] 2R_11038163_SNP [dm6]	C	T	5.561e^-4	0.991	INTRON luna	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	9726892	3L_9726892_SNP [dm3] 3L_9733792_SNP [dm6]	G	A	5.563e^-4	0.991	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
3L	9726895	3L_9726895_SNP [dm3] 3L_9733795_SNP [dm6]	T	G	5.563e^-4	0.991	NON_SYNONYMOUS_CODING CG6749 UPSTREAM mir-4986 DOWNSTREAM CG42268
X	20368080	X_20368080_DEL [dm3] X_20497053_DEL [dm6]	CATTAGAG	C	5.563e^-4	0.991	INTRON RhoGAP19D	TF binding site BDTNP1_TFBS_dl
3R	21258584	3R_21258584_SNP [dm3] 3R_25432862_SNP [dm6]	T	G	5.568e^-4	0.991	INTRON Fur1
3R	21065601	3R_21065601_SNP [dm3] 3R_25239879_SNP [dm6]	A	T	5.572e^-4	0.991	UPSTREAM to DOWNSTREAM CG11852 INTERGENIC
3L	7455424	3L_7455424_SNP [dm3] 3L_7462324_SNP [dm6]	T	A	5.576e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_dl
3L	15320618	3L_15320618_SNP [dm3] 3L_15327518_SNP [dm6]	G	A	5.581e^-4	0.991	INTERGENIC
2L	17080632	2L_17080632_SNP [dm3] 2L_17080632_SNP [dm6]	T	C	5.596e^-4	0.991	INTERGENIC
2L	19832127	2L_19832127_SNP [dm3] 2L_19832127_SNP [dm6]	A	G	5.602e^-4	0.991	INTRON sick
2L	3472133	2L_3472133_SNP [dm3] 2L_3472133_SNP [dm6]	C	T	5.604e^-4	0.991	SYNONYMOUS_CODING CG31776 UPSTREAM pgant4	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_prd mE1_TFBS_bab1 mE1_TFBS_zfh1
3R	15591575	3R_15591575_SNP [dm3] 3R_19765853_SNP [dm6]	C	G	5.607e^-4	0.991	INTRON GluClalpha
3R	13266943	3R_13266943_SNP [dm3] 3R_17441221_SNP [dm6]	T	A	5.625e^-4	0.991	UPSTREAM CG14331 INTRON CG5873
3L	11555531	3L_11555531_SNP [dm3] 3L_11562431_SNP [dm6]	T	C	5.626e^-4	0.991	UPSTREAM CG7394 & 1 other INTRON CG7394	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_run mE1_TFBS_Ubx
3L	10013173	3L_10013173_SNP [dm3] 3L_10020073_SNP [dm6]	C	T	5.628e^-4	0.991	INTRON dpr6
X	20614399	X_20614399_SNP [dm3] X_20743372_SNP [dm6]	T	C	5.630e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_sens
3L	9150461	3L_9150461_SNP [dm3] 3L_9157361_SNP [dm6]	T	A	5.665e^-4	0.991	INTRON Rdl
2R	12687906	2R_12687906_SNP [dm3] 2R_16800401_SNP [dm6]	T	G	5.666e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_zfh1
2L	19878028	2L_19878028_SNP [dm3] 2L_19878028_SNP [dm6]	A	G	5.686e^-4	0.991	INTRON sick
2R	9525976	2R_9525976_DEL [dm3] 2R_13638471_DEL [dm6]	TGTACATA	GC	5.688e^-4	0.991	INTRON fas	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2R	15575585	2R_15575585_SNP [dm3] 2R_19688080_SNP [dm6]	G	T	5.711e^-4	0.991	UPSTREAM CG15128 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
X	13265906	X_13265906_SNP [dm3] X_13371873_SNP [dm6]	G	A	5.711e^-4	0.991	INTRON CG1640	TF binding site BDTNP1_TFBS_dl
3L	11419300	3L_11419300_SNP [dm3] 3L_11426200_SNP [dm6]	C	A	5.739e^-4	0.991	SYNONYMOUS_CODING CG7560	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_HSA
2L	19832125	2L_19832125_SNP [dm3] 2L_19832125_SNP [dm6]	C	G	5.751e^-4	0.991	INTRON sick
2L	5890069	2L_5890069_SNP [dm3] 2L_5890069_SNP [dm6]	G	T	5.757e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	3229481	2R_3229481_SNP [dm3] 2R_7341976_SNP [dm6]	G	T	5.770e^-4	0.991	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
X	4923874	X_4923874_SNP [dm3] X_5029841_SNP [dm6]	A	T	5.775e^-4	0.991	INTRON CR44833
3L	17607734	3L_17607734_SNP [dm3] 3L_17614634_SNP [dm6]	C	A	5.791e^-4	0.991	INTRON Eip74EF	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	4921333	2R_4921333_SNP [dm3] 2R_9033828_SNP [dm6]	T	C	5.791e^-4	0.991	INTERGENIC
X	11661561	X_11661561_SNP [dm3] X_11767528_SNP [dm6]	G	A	5.792e^-4	0.991	SYNONYMOUS_CODING m	TF binding site mE1_TFBS_chinmo
2L	19248001	2L_19248001_SNP [dm3] 2L_19248001_SNP [dm6]	G	T	5.795e^-4	0.991	INTERGENIC
3L	6567363	3L_6567363_INS [dm3] 3L_6574263_INS [dm6]	T	TCTCTCTTT	5.807e^-4	0.991	INTRON CG18769 & 1 other
X	1022387	X_1022387_DEL [dm3] X_1128354_DEL [dm6]	GATGATGATTTCATTCTTG...	G	5.809e^-4	0.991	INTRON CG3655
3L	7946183	3L_7946183_SNP [dm3] 3L_7953083_SNP [dm6]	T	A	5.812e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	18730180	3R_18730180_SNP [dm3] 3R_22904458_SNP [dm6]	A	G	5.825e^-4	0.991	INTRON klg
2L	2926199	2L_2926199_SNP [dm3] 2L_2926199_SNP [dm6]	C	A	5.829e^-4	0.991	INTRON lilli
3R	11258915	3R_11258915_SNP [dm3] 3R_15433193_SNP [dm6]	T	A	5.835e^-4	0.991	INTRON CG6118
2L	18473983	2L_18473983_DEL [dm3] 2L_18473983_DEL [dm6]	TTGACTAGTAATCCTGATCA...	T	5.845e^-4	0.991	DOWNSTREAM let-7-C INTRON CG10283
2L	21386655	2L_21386655_INS [dm3] 2L_21386655_INS [dm6]	A	AAAAA	5.850e^-4	0.991	INTRON nrv3	TF binding site mE1_TFBS_sens
3L	10384273	3L_10384273_INS [dm3] 3L_10391173_INS [dm6]	T	TA	5.854e^-4	0.991	INTERGENIC
2R	3071276	2R_3071276_SNP [dm3] 2R_7183771_SNP [dm6]	A	G	5.862e^-4	0.991	SYNONYMOUS_CODING CG30384 DOWNSTREAM CG30385 INTRON pk	TF binding site mE1_TFBS_chinmo
3L	15903819	3L_15903819_SNP [dm3] 3L_15910719_SNP [dm6]	A	C	5.868e^-4	0.991	INTRON sff	TF binding site mE1_TFBS_cad
2R	1622121	2R_1622121_DEL [dm3] 2R_5734616_DEL [dm6]	CGC	C	5.878e^-4	0.991	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
X	17249853	X_17249853_SNP [dm3] X_17355820_SNP [dm6]	G	A	5.884e^-4	0.991	INTERGENIC
2R	16374552	2R_16374552_SNP [dm3] 2R_20487047_SNP [dm6]	A	C	5.885e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	1373553	2R_1373553_SNP [dm3] 2R_5486048_SNP [dm6]	C	T	5.887e^-4	0.991	INTRON CG30440
2L	19967103	2L_19967103_SNP [dm3] 2L_19967103_SNP [dm6]	C	T	5.888e^-4	0.991	SYNONYMOUS_CODING Hf UPSTREAM OS9	TF binding site mE1_TFBS_cad
X	8000413	X_8000413_SNP [dm3] X_8106380_SNP [dm6]	A	T	5.889e^-4	0.991	UPSTREAM Gclc INTRON Gclc
2R	17884892	2R_17884892_SNP [dm3] 2R_21997387_SNP [dm6]	G	A	5.892e^-4	0.991	INTRON CG34370
3L	19430826	3L_19430826_SNP [dm3] 3L_19437726_SNP [dm6]	T	A	5.896e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_hb mE1_TFBS_HSA
2R	6282945	2R_6282945_SNP [dm3] 2R_10395440_SNP [dm6]	T	C	5.907e^-4	0.991	UPSTREAM CG42732 INTRON CG42732
2R	7135263	2R_7135263_SNP [dm3] 2R_11247758_SNP [dm6]	G	T	5.907e^-4	0.991	UPSTREAM CG34227 INTERGENIC
3R	27228314	3R_27228314_SNP [dm3] 3R_31402592_SNP [dm6]	T	C	5.914e^-4	0.991	DOWNSTREAM Gcn2 INTRON CG11337	TF binding site mE1_TFBS_cad
2L	2560130	2L_2560130_SNP [dm3] 2L_2560130_SNP [dm6]	C	T	5.915e^-4	0.991	INTERGENIC
2R	4027965	2R_4027965_SNP [dm3] 2R_8140460_SNP [dm6]	G	C	5.916e^-4	0.991	INTRON Lpin	TF binding site mE1_TFBS_chinmo
3L	5482254	3L_5482254_SNP [dm3] 3L_5489154_SNP [dm6]	C	A	5.917e^-4	0.991	INTERGENIC
X	21373343	X_21373343_INS [dm3] X_21502316_INS [dm6]	G	GCAAGAGCTGCCGAAAGACT...	5.923e^-4	0.991	INTRON CR45082
2R	5647725	2R_5647725_SNP [dm3] 2R_9760220_SNP [dm6]	G	A	5.927e^-4	0.991	INTRON trpl
2L	11048537	2L_11048537_SNP [dm3] 2L_11048537_SNP [dm6]	T	G	5.928e^-4	0.991	INTRON Samuel	TF binding site mE1_TFBS_cad
2L	5466966	2L_5466966_SNP [dm3] 2L_5466966_SNP [dm6]	A	T	5.939e^-4	0.991	UTR_3_PRIME mid DOWNSTREAM mid
3R	6779994	3R_6779994_SNP [dm3] 3R_10954272_SNP [dm6]	T	C	5.949e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_chinmo
X	18950946	X_18950946_SNP [dm3] X_19056913_SNP [dm6]	C	A	5.949e^-4	0.991	UTR_5_PRIME CG14190
2L	10943681	2L_10943681_SNP [dm3] 2L_10943681_SNP [dm6]	C	T	5.951e^-4	0.991	UPSTREAM CR44492 & 1 other INTRON dpr2
3L	4157039	3L_4157039_SNP [dm3] 3L_4157039_SNP [dm6]	C	T	5.952e^-4	0.991	INTRON nab	TF binding site mE1_TFBS_Kr
3R	10982377	3R_10982377_DEL [dm3] 3R_15156655_DEL [dm6]	GTGAAAAGTGAAAACTTCTG...	G	5.961e^-4	0.991	INTRON Gyc88E
3L	11570759	3L_11570759_SNP [dm3] 3L_11577659_SNP [dm6]	T	C	5.962e^-4	0.991	UPSTREAM CG33489 & 1 other DOWNSTREAM CG33270 INTERGENIC
2R	8314023	2R_8314023_SNP [dm3] 2R_12426518_SNP [dm6]	A	C	5.967e^-4	0.991	SYNONYMOUS_CODING CG8525 DOWNSTREAM CG13154	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	1886665	3R_1886665_SNP [dm3] 3R_6060943_SNP [dm6]	G	A	5.970e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_HSA
2R	20221228	2R_20221228_SNP [dm3] 2R_24333705_SNP [dm6]	G	C	5.981e^-4	0.991	SYNONYMOUS_CODING slbo	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	11829061	3L_11829061_SNP [dm3] 3L_11835961_SNP [dm6]	C	G	5.982e^-4	0.991	SYNONYMOUS_CODING CG43064	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18819966	2L_18819966_SNP [dm3] 2L_18819966_SNP [dm6]	G	T	5.982e^-4	0.991	INTRON CG17324
3R	24664894	3R_24664894_SNP [dm3] 3R_28839172_SNP [dm6]	C	T	5.982e^-4	0.991	SYNONYMOUS_CODING Apc	TF binding site mE1_TFBS_chinmo
2L	14065098	2L_14065098_SNP [dm3] 2L_14065098_SNP [dm6]	C	A	5.987e^-4	0.991	INTRON nAChRalpha5	TF binding site mE1_TFBS_sbb
3R	24162694	3R_24162694_SNP [dm3] 3R_28336972_SNP [dm6]	T	A	5.991e^-4	0.991	UPSTREAM larp DOWNSTREAM Gfat2 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
3L	7946289	3L_7946289_SNP [dm3] 3L_7953189_SNP [dm6]	T	C	5.992e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3R	6506227	3R_6506227_SNP [dm3] 3R_10680505_SNP [dm6]	A	T	5.995e^-4	0.991	INTRON CG14688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3R	6506236	3R_6506236_SNP [dm3] 3R_10680514_SNP [dm6]	A	T	5.995e^-4	0.991	INTRON CG14688	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	18776419	3L_18776419_SNP [dm3] 3L_18783319_SNP [dm6]	G	A	5.998e^-4	0.991	INTRON ftz-f1	TF binding site BDTNP1_TFBS_twi
3L	3714762	3L_3714762_SNP [dm3] 3L_3714762_SNP [dm6]	G	C	5.998e^-4	0.991	DOWNSTREAM CG32264 & 1 other INTERGENIC
2L	11598271	2L_11598271_SNP [dm3] 2L_11598271_SNP [dm6]	G	T	5.999e^-4	0.991	INTRON kek2
3L	12868040	3L_12868040_SNP [dm3] 3L_12874940_SNP [dm6]	G	T	6.001e^-4	0.991	INTERGENIC
3R	12605734	3R_12605734_SNP [dm3] 3R_16780012_SNP [dm6]	T	C	6.003e^-4	0.991	INTERGENIC
3R	11943158	3R_11943158_SNP [dm3] 3R_16117436_SNP [dm6]	C	T	6.009e^-4	0.991	INTRON Sb
2L	1362845	2L_1362845_SNP [dm3] 2L_1362845_SNP [dm6]	A	C	6.016e^-4	0.991	INTERGENIC	TF binding site mE1_TFBS_cad
3L	5485871	3L_5485871_SNP [dm3] 3L_5492771_SNP [dm6]	G	C	6.022e^-4	0.991	DOWNSTREAM CR44520 INTERGENIC
X	13629158	X_13629158_SNP [dm3] X_13735125_SNP [dm6]	A	C	6.024e^-4	0.991	INTRON g
2R	15123390	2R_15123390_SNP [dm3] 2R_19235885_SNP [dm6]	G	A	6.027e^-4	0.991	SYNONYMOUS_CODING cora	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
3R	20269628	3R_20269628_SNP [dm3] 3R_24443906_SNP [dm6]	C	T	6.035e^-4	0.991	INTRON nAChRalpha1
X	6359553	X_6359553_SNP [dm3] X_6465520_SNP [dm6]	G	A	6.046e^-4	0.991	UTR_3_PRIME CG42340 INTRON CG42340
X	11253412	X_11253412_SNP [dm3] X_11359379_SNP [dm6]	C	A	6.047e^-4	0.991	SYNONYMOUS_CODING Pa1 DOWNSTREAM dsh	TF binding site BDTNP1_TFBS_dl mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens
X	20141087	X_20141087_SNP [dm3] X_20270061_SNP [dm6]	A	G	6.061e^-4	0.991	UPSTREAM Inx6 INTERGENIC
3R	8691605	3R_8691605_SNP [dm3] 3R_12865883_SNP [dm6]	G	A	6.071e^-4	0.991	INTERGENIC
2L	14694482	2L_14694482_SNP [dm3] 2L_14694482_SNP [dm6]	T	C	6.072e^-4	0.991	INTERGENIC
3R	25849874	3R_25849874_SNP [dm3] 3R_30024152_SNP [dm6]	T	A	6.072e^-4	0.991	INTRON Axn
2R	7016818	2R_7016818_SNP [dm3] 2R_11129313_SNP [dm6]	G	A	6.091e^-4	0.991	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	8707659	3R_8707659_SNP [dm3] 3R_12881937_SNP [dm6]	T	A	6.103e^-4	0.991	INTERGENIC
X	10048392	X_10048392_SNP [dm3] X_10154359_SNP [dm6]	A	C	6.107e^-4	0.991	INTRON CR44894 & 1 other EXON CR44894
3L	8593135	3L_8593135_SNP [dm3] 3L_8600035_SNP [dm6]	G	T	6.107e^-4	0.991	UPSTREAM RpL14 DOWNSTREAM CG43078 INTRON Nelf-E
2R	14668245	2R_14668245_SNP [dm3] 2R_18780740_SNP [dm6]	A	T	6.108e^-4	0.991	INTERGENIC
3R	14655094	3R_14655094_SNP [dm3] 3R_18829372_SNP [dm6]	A	T	6.109e^-4	0.991	INTRON CG18208
2L	18473974	2L_18473974_SNP [dm3] 2L_18473974_SNP [dm6]	T	A	6.136e^-4	0.991	DOWNSTREAM let-7-C INTRON CG10283
2L	18473979	2L_18473979_SNP [dm3] 2L_18473979_SNP [dm6]	T	C	6.139e^-4	0.991	DOWNSTREAM let-7-C INTRON CG10283
3L	5435359	3L_5435359_SNP [dm3] 3L_5442259_SNP [dm6]	A	T	6.152e^-4	0.991	UTR_3_PRIME CG34391
2R	6263561	2R_6263561_SNP [dm3] 2R_10376056_SNP [dm6]	C	G	6.154e^-4	0.991	DOWNSTREAM Ir47b INTRON CG42732
3L	7767902	3L_7767902_SNP [dm3] 3L_7774802_SNP [dm6]	T	C	6.165e^-4	0.991	INTRON Clk	regulatory region REDfly_CRMs

By genomic position
Variant impact
Gene name

Deaths phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results