DGRPool

GWAS results were computed on dm3 genome.

If you want to make an independent analysis with DGRP2 or PLINK2, you can find here prepared input files for this phenotype: DGRP2 results PLINK2 results

Full results

Phenotype distribution and association to known covariates

Shapiro-Wilk test of normality (p-value=1.110e^-16)
Null Hypothesis is rejected (p<=0.05).
Interpretation: NOT NORMAL distribution of this phenotype

We tested for association of this phenotype with 6 known covariates Huang et al., 2014 using both ANOVA and Kruskal-Wallis association tests.

ANOVA test
No significant result.

Kruskal-Wallis test

Covariate	χ²	p-value	Significance
In_2R_NS	5.0649	0.0795
In_3R_P	9.4516	0.0089

PNG PDF

QQplot

PNG PDF

Manhattan plot

GWAS results

2391 significant hits at p-value < 0.001. The 1000 top results are displayed in the table below.

We performed a gene enrichment calculation (Fisher's exact test) of all GWAS-associated genes at p < 0.001. Genesets were taken from two database: the Gene Ontology (GO) and the FlyBase phenotypes. GO enrichment FlyBase phenotype enrichment

Variant impact HIGH MODERATE LOW MODIFIER

Chromosome	Position	ID	Reference	Variant	p-value	FDR_BH	Transcript annotation	Binding site annotation
2R	10608749	2R_10608749_SNP [dm3] 2R_14721244_SNP [dm6]	C	G	8.049e^-12	1.510e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10608747	2R_10608747_SNP [dm3] 2R_14721242_SNP [dm6]	C	T	1.766e^-11	1.656e^-5	INTERGENIC	TF binding site mE1_TFBS_inv
2R	10621372	2R_10621372_SNP [dm3] 2R_14733867_SNP [dm6]	C	A	1.609e^-9	0.001	INTERGENIC
3L	12710777	3L_12710777_SNP [dm3] 3L_12717677_SNP [dm6]	G	T	3.193e^-9	0.001	INTERGENIC
3L	12710782	3L_12710782_SNP [dm3] 3L_12717682_SNP [dm6]	G	A	3.412e^-9	0.001	INTERGENIC
2R	10608696	2R_10608696_SNP [dm3] 2R_14721191_SNP [dm6]	G	A	1.713e^-8	0.005	INTERGENIC
2R	15159096	2R_15159096_SNP [dm3] 2R_19271591_SNP [dm6]	G	C	2.107e^-8	0.005	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10787392	2R_10787392_SNP [dm3] 2R_14899887_SNP [dm6]	A	T	2.242e^-8	0.005	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10787362	2R_10787362_SNP [dm3] 2R_14899857_SNP [dm6]	T	C	4.668e^-8	0.008	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	10715639	2R_10715639_SNP [dm3] 2R_14828134_SNP [dm6]	A	T	4.932e^-8	0.008	INTERGENIC
2R	10368189	2R_10368189_SNP [dm3] 2R_14480684_SNP [dm6]	G	C	5.092e^-8	0.008	UPSTREAM L INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_bab1
2R	10701426	2R_10701426_SNP [dm3] 2R_14813921_SNP [dm6]	G	A	5.407e^-8	0.008	INTERGENIC	TF binding site mE1_TFBS_Trl
2R	10705677	2R_10705677_SNP [dm3] 2R_14818172_SNP [dm6]	G	T	6.256e^-8	0.008	NON_SYNONYMOUS_CODING CG10202	TF binding site BDTNP1_TFBS_twi mE1_TFBS_sens
2R	10719564	2R_10719564_SNP [dm3] 2R_14832059_SNP [dm6]	G	A	6.256e^-8	0.008	UPSTREAM CG10205 INTERGENIC
2R	10713301	2R_10713301_SNP [dm3] 2R_14825796_SNP [dm6]	T	G	6.902e^-8	0.009	INTERGENIC
2L	17088640	2L_17088640_SNP [dm3] 2L_17088640_SNP [dm6]	G	A	7.563e^-8	0.009	UTR_3_PRIME CG12620
2R	10721948	2R_10721948_SNP [dm3] 2R_14834443_SNP [dm6]	C	A	8.333e^-8	0.009	DOWNSTREAM CG10205 INTERGENIC
2R	10700525	2R_10700525_SNP [dm3] 2R_14813020_SNP [dm6]	G	A	8.427e^-8	0.009	INTERGENIC	regulatory region REDfly_CRMs
2R	10608631	2R_10608631_SNP [dm3] 2R_14721126_SNP [dm6]	G	A	8.855e^-8	0.009	INTERGENIC
2R	9632088	2R_9632088_INS [dm3] 2R_13744583_INS [dm6]	T	TT	1.172e^-7	0.011	INTRON fas
2R	7475070	2R_7475070_SNP [dm3] 2R_11587565_SNP [dm6]	A	T	1.237e^-7	0.011	SYNONYMOUS_CODING tou DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	15159019	2R_15159019_SNP [dm3] 2R_19271514_SNP [dm6]	A	T	1.444e^-7	0.012	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	15159014	2R_15159014_SNP [dm3] 2R_19271509_SNP [dm6]	G	T	1.506e^-7	0.012	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	10749489	2R_10749489_SNP [dm3] 2R_14861984_SNP [dm6]	C	T	1.628e^-7	0.013	NON_SYNONYMOUS_CODING Inr-a	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	10787579	2R_10787579_SNP [dm3] 2R_14900074_SNP [dm6]	T	C	1.962e^-7	0.015	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17923262	2L_17923262_SNP [dm3] 2L_17923262_SNP [dm6]	G	C	2.414e^-7	0.017	INTERGENIC
X	16159941	X_16159941_MNP [dm3] X_16265908_MNP [dm6]	CAT	TTG	2.663e^-7	0.019	INTRON CG12507
2R	15158993	2R_15158993_DEL [dm3] 2R_19271488_DEL [dm6]	CA	T	2.857e^-7	0.019	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
X	16159938	X_16159938_SNP [dm3] X_16265905_SNP [dm6]	T	C	2.959e^-7	0.019	INTRON CG12507
2L	2425224	2L_2425224_SNP [dm3] 2L_2425224_SNP [dm6]	C	T	3.288e^-7	0.021	DOWNSTREAM CG9886 & 1 other INTERGENIC
2R	10608610	2R_10608610_SNP [dm3] 2R_14721105_SNP [dm6]	C	G	3.438e^-7	0.021	INTERGENIC
2R	10666546	2R_10666546_SNP [dm3] 2R_14779041_SNP [dm6]	T	C	3.564e^-7	0.021	INTRON kn
3L	1267484	3L_1267484_SNP [dm3] 3L_1267484_SNP [dm6]	A	G	4.005e^-7	0.023	INTRON CG9134
2R	10366370	2R_10366370_SNP [dm3] 2R_14478865_SNP [dm6]	T	C	4.747e^-7	0.025	DOWNSTREAM CR44462 INTERGENIC	TF binding site mE1_TFBS_cad
2R	3495195	2R_3495195_INS [dm3] 2R_7607690_INS [dm6]	C	CTTCATTGTCCGAAGGCCTT...	4.779e^-7	0.025	INTRON CG1358
2R	10460322	2R_10460322_SNP [dm3] 2R_14572817_SNP [dm6]	C	A	4.817e^-7	0.025	SYNONYMOUS_CODING LamC INTRON ttv
2R	10666534	2R_10666534_SNP [dm3] 2R_14779029_SNP [dm6]	G	A	5.098e^-7	0.026	INTRON kn
2R	15595811	2R_15595811_SNP [dm3] 2R_19708306_SNP [dm6]	C	A	5.233e^-7	0.026	INTERGENIC
2R	17775940	2R_17775940_SNP [dm3] 2R_21888435_SNP [dm6]	G	A	5.303e^-7	0.026	INTRON Fili
2R	15159007	2R_15159007_SNP [dm3] 2R_19271502_SNP [dm6]	G	A	6.204e^-7	0.029	INTRON rib	enhancer mE1_CBP_Enhancers TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_cad
2R	7475262	2R_7475262_SNP [dm3] 2R_11587757_SNP [dm6]	C	A	6.300e^-7	0.029	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
X	16159947	X_16159947_SNP [dm3] X_16265914_SNP [dm6]	C	T	6.520e^-7	0.029	INTRON CG12507
2R	9632130	2R_9632130_SNP [dm3] 2R_13744625_SNP [dm6]	A	G	6.775e^-7	0.03	INTRON fas
2R	10721104	2R_10721104_SNP [dm3] 2R_14833599_SNP [dm6]	G	A	7.434e^-7	0.032	NON_SYNONYMOUS_CODING CG10205 UTR_3_PRIME CG10205
2L	8363433	2L_8363433_DEL [dm3] 2L_8363433_DEL [dm6]	CC	C	8.121e^-7	0.034	UPSTREAM CG7627 DOWNSTREAM RpS13 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z
2R	9632106	2R_9632106_SNP [dm3] 2R_13744601_SNP [dm6]	A	T	9.573e^-7	0.038	INTRON fas
2R	17775943	2R_17775943_SNP [dm3] 2R_21888438_SNP [dm6]	A	T	9.753e^-7	0.038	INTRON Fili
2R	10585509	2R_10585509_SNP [dm3] 2R_14698004_SNP [dm6]	G	T	9.842e^-7	0.038	INTRON mspo
2R	10294461	2R_10294461_SNP [dm3] 2R_14406956_SNP [dm6]	T	A	9.921e^-7	0.038	INTERGENIC
X	9584882	X_9584882_SNP [dm3] X_9690849_SNP [dm6]	C	G	1.033e^-6	0.038	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	17081741	2L_17081741_SNP [dm3] 2L_17081741_SNP [dm6]	G	A	1.037e^-6	0.038	INTERGENIC
2R	10585346	2R_10585346_SNP [dm3] 2R_14697841_SNP [dm6]	C	T	1.132e^-6	0.041	INTRON mspo
2R	15595812	2R_15595812_SNP [dm3] 2R_19708307_SNP [dm6]	G	A	1.145e^-6	0.041	INTERGENIC
2R	7475118	2R_7475118_SNP [dm3] 2R_11587613_SNP [dm6]	G	T	1.176e^-6	0.041	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	15595908	2R_15595908_SNP [dm3] 2R_19708403_SNP [dm6]	A	C	1.205e^-6	0.041	INTERGENIC
2R	10666533	2R_10666533_SNP [dm3] 2R_14779028_SNP [dm6]	G	A	1.368e^-6	0.046	INTRON kn
2R	10549497	2R_10549497_SNP [dm3] 2R_14661992_SNP [dm6]	T	G	1.549e^-6	0.051	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	10927438	2R_10927438_SNP [dm3] 2R_15039933_SNP [dm6]	T	A	1.735e^-6	0.056	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	17775947	2R_17775947_SNP [dm3] 2R_21888442_SNP [dm6]	C	A	1.770e^-6	0.056	INTRON Fili
2R	17775930	2R_17775930_SNP [dm3] 2R_21888425_SNP [dm6]	G	C	1.799e^-6	0.056	INTRON Fili
2R	12370631	2R_12370631_SNP [dm3] 2R_16483126_SNP [dm6]	G	A	1.878e^-6	0.058	INTERGENIC
2R	10676596	2R_10676596_SNP [dm3] 2R_14789091_SNP [dm6]	G	T	1.946e^-6	0.059	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	10674472	2R_10674472_SNP [dm3] 2R_14786967_SNP [dm6]	A	G	2.022e^-6	0.059	INTRON kn	TF binding site BDTNP1_TFBS_dl
2R	10675354	2R_10675354_SNP [dm3] 2R_14787849_SNP [dm6]	C	A	2.022e^-6	0.059	INTRON kn	TF binding site BDTNP1_TFBS_da
2R	10616116	2R_10616116_SNP [dm3] 2R_14728611_SNP [dm6]	G	A	2.119e^-6	0.061	INTERGENIC
2R	10549501	2R_10549501_SNP [dm3] 2R_14661996_SNP [dm6]	T	G	2.194e^-6	0.062	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9334599	2R_9334599_SNP [dm3] 2R_13447094_SNP [dm6]	A	G	2.394e^-6	0.067	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	7474501	2R_7474501_SNP [dm3] 2R_11586996_SNP [dm6]	G	A	2.495e^-6	0.069	SYNONYMOUS_CODING tou
2L	17999630	2L_17999630_SNP [dm3] 2L_17999630_SNP [dm6]	C	T	2.616e^-6	0.07	INTERGENIC
2L	17999633	2L_17999633_SNP [dm3] 2L_17999633_SNP [dm6]	C	T	2.616e^-6	0.07	INTERGENIC
2R	15060790	2R_15060790_DEL [dm3] 2R_19173285_DEL [dm6]	TCCT	T	2.728e^-6	0.07	INTRON CG10737
2L	17923288	2L_17923288_SNP [dm3] 2L_17923288_SNP [dm6]	T	A	2.762e^-6	0.07	INTERGENIC
2R	15595891	2R_15595891_SNP [dm3] 2R_19708386_SNP [dm6]	G	A	2.784e^-6	0.07	INTERGENIC
2R	15595892	2R_15595892_SNP [dm3] 2R_19708387_SNP [dm6]	A	G	2.784e^-6	0.07	INTERGENIC
2R	15595906	2R_15595906_SNP [dm3] 2R_19708401_SNP [dm6]	C	G	2.784e^-6	0.07	INTERGENIC
X	16159933	X_16159933_SNP [dm3] X_16265900_SNP [dm6]	A	C	2.867e^-6	0.07	INTRON CG12507
2R	15595905	2R_15595905_SNP [dm3] 2R_19708400_SNP [dm6]	T	A	2.893e^-6	0.07	INTERGENIC
2R	10585511	2R_10585511_SNP [dm3] 2R_14698006_SNP [dm6]	T	A	2.964e^-6	0.071	INTRON mspo
2R	10787494	2R_10787494_SNP [dm3] 2R_14899989_SNP [dm6]	C	T	3.039e^-6	0.072	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	17066954	2L_17066954_SNP [dm3] 2L_17066954_SNP [dm6]	T	A	3.286e^-6	0.077	INTERGENIC
2R	10709770	2R_10709770_SNP [dm3] 2R_14822265_SNP [dm6]	C	T	3.467e^-6	0.08	INTERGENIC
2R	15863357	2R_15863357_SNP [dm3] 2R_19975852_SNP [dm6]	G	A	4.292e^-6	0.098	INTERGENIC
X	9585103	X_9585103_SNP [dm3] X_9691070_SNP [dm6]	A	G	4.492e^-6	0.102	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	15195124	2R_15195124_SNP [dm3] 2R_19307619_SNP [dm6]	T	A	4.804e^-6	0.107	UTR_3_PRIME EndoB DOWNSTREAM CG7461
2R	10151602	2R_10151602_SNP [dm3] 2R_14264097_SNP [dm6]	C	T	5.029e^-6	0.111	INTRON CG8547	TF binding site mE1_TFBS_cad
2R	8702260	2R_8702260_DEL [dm3] 2R_12814755_DEL [dm6]	TTAGCT	T	5.347e^-6	0.116	INTERGENIC
2L	4367595	2L_4367595_SNP [dm3] 2L_4367595_SNP [dm6]	G	A	5.373e^-6	0.116	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	14010795	2R_14010795_SNP [dm3] 2R_18123290_SNP [dm6]	G	A	5.669e^-6	0.121	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2R	6064333	2R_6064333_SNP [dm3] 2R_10176828_SNP [dm6]	G	A	5.867e^-6	0.124	INTRON KCNQ
2R	10788315	2R_10788315_SNP [dm3] 2R_14900810_SNP [dm6]	G	A	6.087e^-6	0.127	NON_SYNONYMOUS_CODING Cyp317a1 DOWNSTREAM CG10249	TF binding site mE1_TFBS_sens
2R	10234617	2R_10234617_SNP [dm3] 2R_14347112_SNP [dm6]	A	G	6.318e^-6	0.13	INTRON Shroom
X	9584618	X_9584618_SNP [dm3] X_9690585_SNP [dm6]	C	T	6.802e^-6	0.139	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
X	9471620	X_9471620_SNP [dm3] X_9577587_SNP [dm6]	G	T	6.888e^-6	0.139	INTRON CG32699
2R	7476111	2R_7476111_SNP [dm3] 2R_11588606_SNP [dm6]	C	G	7.384e^-6	0.147	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
2R	10702960	2R_10702960_SNP [dm3] 2R_14815455_SNP [dm6]	A	C	7.679e^-6	0.15	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
X	9585081	X_9585081_SNP [dm3] X_9691048_SNP [dm6]	T	A	7.687e^-6	0.15	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10791745	2R_10791745_SNP [dm3] 2R_14904240_SNP [dm6]	C	A	7.768e^-6	0.15	SYNONYMOUS_CODING CG10249 UPSTREAM CG10249	TF binding site mE1_TFBS_chinmo
2R	10453850	2R_10453850_SNP [dm3] 2R_14566345_SNP [dm6]	T	C	8.320e^-6	0.156	INTRON ttv
2R	4969919	2R_4969919_SNP [dm3] 2R_9082414_SNP [dm6]	A	C	8.325e^-6	0.156	UTR_5_PRIME CNT1 DOWNSTREAM CG8083
2R	8631536	2R_8631536_DEL [dm3] 2R_12744031_DEL [dm6]	TGCGTAAGTTTAGTTTCGT...	T	8.481e^-6	0.156	INTRON CG42663	TF binding site mE1_TFBS_Trl
2L	17927212	2L_17927212_SNP [dm3] 2L_17927212_SNP [dm6]	T	A	8.503e^-6	0.156	INTERGENIC
2L	4264252	2L_4264252_SNP [dm3] 2L_4264252_SNP [dm6]	C	A	8.541e^-6	0.156	INTERGENIC	TF binding site mE1_TFBS_chinmo
2R	7474789	2R_7474789_SNP [dm3] 2R_11587284_SNP [dm6]	G	A	8.547e^-6	0.156	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2L	18000246	2L_18000246_SNP [dm3] 2L_18000246_SNP [dm6]	A	G	8.829e^-6	0.159	INTERGENIC
3L	12615691	3L_12615691_SNP [dm3] 3L_12622591_SNP [dm6]	C	T	9.098e^-6	0.163	DOWNSTREAM caup INTERGENIC
2L	20342456	2L_20342456_SNP [dm3] 2L_20342456_SNP [dm6]	A	G	9.273e^-6	0.164	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
2R	9631995	2R_9631995_DEL [dm3] 2R_13744490_DEL [dm6]	GT	G	9.703e^-6	0.169	INTRON fas
2R	8717230	2R_8717230_INS [dm3] 2R_12829725_INS [dm6]	A	AGA	9.727e^-6	0.169	INTERGENIC
2R	12198042	2R_12198042_SNP [dm3] 2R_16310537_SNP [dm6]	C	T	9.819e^-6	0.169	INTRON Nox	TF binding site mE1_TFBS_chinmo
2R	10622250	2R_10622250_SNP [dm3] 2R_14734745_SNP [dm6]	A	T	1.020e^-5	0.174	INTERGENIC
2L	17054282	2L_17054282_SNP [dm3] 2L_17054282_SNP [dm6]	A	T	1.040e^-5	0.174	INTERGENIC
2R	10666527	2R_10666527_SNP [dm3] 2R_14779022_SNP [dm6]	G	C	1.045e^-5	0.174	INTRON kn
2R	7464443	2R_7464443_SNP [dm3] 2R_11576938_SNP [dm6]	G	A	1.048e^-5	0.174	DOWNSTREAM tou INTERGENIC
2R	10700594	2R_10700594_SNP [dm3] 2R_14813089_SNP [dm6]	A	G	1.069e^-5	0.176	INTERGENIC
2L	17999674	2L_17999674_SNP [dm3] 2L_17999674_SNP [dm6]	G	C	1.088e^-5	0.176	INTERGENIC
2R	10622249	2R_10622249_SNP [dm3] 2R_14734744_SNP [dm6]	C	A	1.091e^-5	0.176	INTERGENIC
2L	4271986	2L_4271986_SNP [dm3] 2L_4271986_SNP [dm6]	G	A	1.106e^-5	0.177	INTERGENIC
3R	25223305	3R_25223305_SNP [dm3] 3R_29397583_SNP [dm6]	G	A	1.120e^-5	0.178	INTRON Ptp99A
2R	20163542	2R_20163542_SNP [dm3] 2R_24276019_SNP [dm6]	G	T	1.133e^-5	0.179	UTR_5_PRIME nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	12615862	3L_12615862_SNP [dm3] 3L_12622762_SNP [dm6]	C	A	1.162e^-5	0.182	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	10688949	2R_10688949_SNP [dm3] 2R_14801444_SNP [dm6]	C	A	1.172e^-5	0.182	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
X	9584351	X_9584351_SNP [dm3] X_9690318_SNP [dm6]	A	G	1.182e^-5	0.182	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr
2L	4231695	2L_4231695_SNP [dm3] 2L_4231695_SNP [dm6]	C	T	1.194e^-5	0.182	INTERGENIC
2L	17999677	2L_17999677_SNP [dm3] 2L_17999677_SNP [dm6]	T	C	1.214e^-5	0.183	INTERGENIC
2L	14067653	2L_14067653_SNP [dm3] 2L_14067653_SNP [dm6]	A	G	1.231e^-5	0.183	INTRON nAChRalpha5
2L	17060807	2L_17060807_SNP [dm3] 2L_17060807_SNP [dm6]	G	A	1.248e^-5	0.183	INTERGENIC
3L	12615880	3L_12615880_SNP [dm3] 3L_12622780_SNP [dm6]	T	A	1.250e^-5	0.183	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
X	16159952	X_16159952_SNP [dm3] X_16265919_SNP [dm6]	T	A	1.256e^-5	0.183	INTRON CG12507
2R	10622258	2R_10622258_SNP [dm3] 2R_14734753_SNP [dm6]	T	C	1.262e^-5	0.183	INTERGENIC
X	7887816	X_7887816_SNP [dm3] X_7993783_SNP [dm6]	A	G	1.304e^-5	0.188	INTERGENIC
2R	13095737	2R_13095737_SNP [dm3] 2R_17208232_SNP [dm6]	A	G	1.349e^-5	0.192	INTERGENIC
2L	17924068	2L_17924068_SNP [dm3] 2L_17924068_SNP [dm6]	A	C	1.359e^-5	0.192	INTERGENIC
2L	17060244	2L_17060244_SNP [dm3] 2L_17060244_SNP [dm6]	C	A	1.363e^-5	0.192	INTERGENIC
2L	11314840	2L_11314840_SNP [dm3] 2L_11314840_SNP [dm6]	G	A	1.371e^-5	0.192	INTERGENIC
2L	10870068	2L_10870068_SNP [dm3] 2L_10870068_SNP [dm6]	C	T	1.408e^-5	0.195	UPSTREAM CG12517 & 1 other INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_inv
3L	12615861	3L_12615861_SNP [dm3] 3L_12622761_SNP [dm6]	T	A	1.414e^-5	0.195	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	3602964	2L_3602964_SNP [dm3] 2L_3602964_SNP [dm6]	G	A	1.430e^-5	0.196	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	10794242	2R_10794242_DEL [dm3] 2R_14906737_DEL [dm6]	AACCTAAAT	A	1.444e^-5	0.196	UPSTREAM CG10249 INTRON CG10249
2R	17775929	2R_17775929_SNP [dm3] 2R_21888424_SNP [dm6]	G	A	1.466e^-5	0.197	INTRON Fili
2R	10371485	2R_10371485_SNP [dm3] 2R_14483980_SNP [dm6]	C	T	1.470e^-5	0.197	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2R	8702157	2R_8702157_SNP [dm3] 2R_12814652_SNP [dm6]	A	T	1.491e^-5	0.198	INTERGENIC
X	10721455	X_10721455_SNP [dm3] X_10827422_SNP [dm6]	A	C	1.523e^-5	0.201	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	12245315	2R_12245315_SNP [dm3] 2R_16357810_SNP [dm6]	G	A	1.571e^-5	0.205	DOWNSTREAM CR45322 EXON CR43416
2R	17180522	2R_17180522_SNP [dm3] 2R_21293017_SNP [dm6]	A	T	1.577e^-5	0.205	UPSTREAM CG30392 & 1 other INTRON Sgf29	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 mE1_TFBS_sens
2R	8701950	2R_8701950_SNP [dm3] 2R_12814445_SNP [dm6]	T	G	1.601e^-5	0.207	INTERGENIC
X	4925342	X_4925342_SNP [dm3] X_5031309_SNP [dm6]	A	T	1.651e^-5	0.212	INTRON CR44833
2L	17065350	2L_17065350_SNP [dm3] 2L_17065350_SNP [dm6]	G	A	1.697e^-5	0.216	INTERGENIC
2R	10516851	2R_10516851_SNP [dm3] 2R_14629346_SNP [dm6]	T	C	1.706e^-5	0.216	UPSTREAM CG10131 INTERGENIC
2R	15220811	2R_15220811_SNP [dm3] 2R_19333306_SNP [dm6]	C	G	1.735e^-5	0.218	INTRON Rgk1 & 1 other
2L	17060671	2L_17060671_SNP [dm3] 2L_17060671_SNP [dm6]	G	A	1.753e^-5	0.218	INTERGENIC
2R	20163760	2R_20163760_SNP [dm3] 2R_24276237_SNP [dm6]	A	G	1.761e^-5	0.218	INTRON nvy	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10608720	2R_10608720_SNP [dm3] 2R_14721215_SNP [dm6]	C	G	1.768e^-5	0.218	INTERGENIC	TF binding site mE1_TFBS_inv
2R	4969288	2R_4969288_SNP [dm3] 2R_9081783_SNP [dm6]	G	A	1.791e^-5	0.219	SYNONYMOUS_CODING CG8083 UPSTREAM CNT1
2R	13299875	2R_13299875_SNP [dm3] 2R_17412370_SNP [dm6]	C	T	1.801e^-5	0.219	UPSTREAM Prosalpha5 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cnc mE1_TFBS_HSA mE1_TFBS_Ubx
2R	8702326	2R_8702326_SNP [dm3] 2R_12814821_SNP [dm6]	G	A	1.818e^-5	0.22	INTERGENIC
2R	10154268	2R_10154268_SNP [dm3] 2R_14266763_SNP [dm6]	T	C	1.910e^-5	0.23	INTRON CG8547
2R	10376657	2R_10376657_SNP [dm3] 2R_14489152_SNP [dm6]	C	T	2.005e^-5	0.24	INTRON L
2L	17999622	2L_17999622_SNP [dm3] 2L_17999622_SNP [dm6]	C	T	2.030e^-5	0.241	INTERGENIC
3L	12615831	3L_12615831_SNP [dm3] 3L_12622731_SNP [dm6]	C	A	2.062e^-5	0.243	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	2355935	2L_2355935_DEL [dm3] 2L_2355935_DEL [dm6]	ATGAAGA	A	2.145e^-5	0.251	INTRON CG9967 & 1 other
X	7887936	X_7887936_SNP [dm3] X_7993903_SNP [dm6]	C	T	2.167e^-5	0.252	INTERGENIC
2R	8702332	2R_8702332_SNP [dm3] 2R_12814827_SNP [dm6]	T	C	2.174e^-5	0.252	INTERGENIC
2R	8631526	2R_8631526_INS [dm3] 2R_12744021_INS [dm6]	G	GG	2.191e^-5	0.252	INTRON CG42663	TF binding site mE1_TFBS_Trl
2R	10154275	2R_10154275_SNP [dm3] 2R_14266770_SNP [dm6]	A	G	2.230e^-5	0.254	INTRON CG8547
2L	9304036	2L_9304036_SNP [dm3] 2L_9304036_SNP [dm6]	C	T	2.238e^-5	0.254	DOWNSTREAM CR42844 INTERGENIC
2R	9356080	2R_9356080_SNP [dm3] 2R_13468575_SNP [dm6]	A	C	2.257e^-5	0.255	INTRON arr	TF binding site mE1_TFBS_chinmo
2L	20342459	2L_20342459_SNP [dm3] 2L_20342459_SNP [dm6]	A	T	2.299e^-5	0.258	SYNONYMOUS_CODING spir INTRON spir	TF binding site mE1_TFBS_cad
3R	12855693	3R_12855693_SNP [dm3] 3R_17029971_SNP [dm6]	A	G	2.375e^-5	0.265	SYNONYMOUS_CODING CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
3L	7818560	3L_7818560_SNP [dm3] 3L_7825460_SNP [dm6]	C	A	2.387e^-5	0.265	INTRON Pdp1
3L	1234409	3L_1234409_SNP [dm3] 3L_1234409_SNP [dm6]	G	A	2.473e^-5	0.273	SYNONYMOUS_CODING CG33966 DOWNSTREAM CG33965
2R	20416447	2R_20416447_SNP [dm3] 2R_24528924_SNP [dm6]	A	G	2.512e^-5	0.275	SYNONYMOUS_CODING Brca2 DOWNSTREAM Ir60e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10785994	2R_10785994_SNP [dm3] 2R_14898489_SNP [dm6]	G	T	2.570e^-5	0.28	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	10704614	2R_10704614_SNP [dm3] 2R_14817109_SNP [dm6]	G	A	2.630e^-5	0.283	DOWNSTREAM CG10202 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	16962546	2R_16962546_SNP [dm3] 2R_21075041_SNP [dm6]	A	C	2.633e^-5	0.283	UPSTREAM Treh INTRON Treh	TF binding site mE1_TFBS_Trl
3R	12857210	3R_12857210_SNP [dm3] 3R_17031488_SNP [dm6]	C	T	2.646e^-5	0.283	UPSTREAM CG31268 DOWNSTREAM CG5225 INTERGENIC
2R	8702306	2R_8702306_SNP [dm3] 2R_12814801_SNP [dm6]	A	G	2.652e^-5	0.283	INTERGENIC
2R	10540199	2R_10540199_SNP [dm3] 2R_14652694_SNP [dm6]	T	C	2.712e^-5	0.284	INTERGENIC
2R	8383825	2R_8383825_SNP [dm3] 2R_12496320_SNP [dm6]	C	T	2.731e^-5	0.284	INTRON fdl & 1 other
2L	9258652	2L_9258652_SNP [dm3] 2L_9258652_SNP [dm6]	A	T	2.747e^-5	0.284	INTRON Ggamma30A
2R	18873095	2R_18873095_SNP [dm3] 2R_22985572_SNP [dm6]	G	T	2.747e^-5	0.284	SYNONYMOUS_CODING CG9897 UTR_5_PRIME twi UTR_3_PRIME CG9897 UPSTREAM mir-4939 & 1 other EXON CR42742
3L	21858162	3L_21858162_SNP [dm3] 3L_21865062_SNP [dm6]	C	G	2.768e^-5	0.284	INTRON mub
2R	14520877	2R_14520877_SNP [dm3] 2R_18633372_SNP [dm6]	A	G	2.769e^-5	0.284	INTRON CG30122
2R	14520878	2R_14520878_SNP [dm3] 2R_18633373_SNP [dm6]	C	A	2.769e^-5	0.284	INTRON CG30122
2R	20164042	2R_20164042_SNP [dm3] 2R_24276519_SNP [dm6]	G	T	2.821e^-5	0.288	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_sens
2R	10532301	2R_10532301_SNP [dm3] 2R_14644796_SNP [dm6]	T	A	2.895e^-5	0.292	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12615910	3L_12615910_DEL [dm3] 3L_12622810_DEL [dm6]	TTTTCAAT	T	2.896e^-5	0.292	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6756442	2L_6756442_SNP [dm3] 2L_6756442_SNP [dm6]	A	G	2.922e^-5	0.293	DOWNSTREAM CG11221 INTERGENIC
X	15060324	X_15060324_SNP [dm3] X_15166291_SNP [dm6]	T	A	2.960e^-5	0.293	INTERGENIC
X	15060333	X_15060333_SNP [dm3] X_15166300_SNP [dm6]	A	G	2.960e^-5	0.293	INTERGENIC
2R	13717995	2R_13717995_INS [dm3] 2R_17830490_INS [dm6]	A	AA	2.973e^-5	0.293	INTRON grh	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd
2R	8702111	2R_8702111_SNP [dm3] 2R_12814606_SNP [dm6]	C	T	2.981e^-5	0.293	INTERGENIC
2L	17070070	2L_17070070_SNP [dm3] 2L_17070070_SNP [dm6]	G	A	3.016e^-5	0.295	INTERGENIC
2R	7474864	2R_7474864_SNP [dm3] 2R_11587359_SNP [dm6]	C	T	3.039e^-5	0.295	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	14010797	2R_14010797_SNP [dm3] 2R_18123292_SNP [dm6]	G	C	3.079e^-5	0.298	INTRON stau	TF binding site BDTNP1_TFBS_Med mE1_TFBS_cad
2L	6593870	2L_6593870_SNP [dm3] 2L_6593870_SNP [dm6]	G	A	3.156e^-5	0.301	INTRON CG11319
2R	12012548	2R_12012548_SNP [dm3] 2R_16125043_SNP [dm6]	A	G	3.157e^-5	0.301	UTR_5_PRIME spin DOWNSTREAM CG30095	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_Trl mE1_TFBS_Ubx
2L	9253428	2L_9253428_INS [dm3] 2L_9253428_INS [dm6]	G	CACGACATAAAAACAAAAA...	3.163e^-5	0.301	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	7174015	2L_7174015_SNP [dm3] 2L_7174015_SNP [dm6]	T	A	3.210e^-5	0.304	DOWNSTREAM CR44610 INTERGENIC
2R	3507190	2R_3507190_SNP [dm3] 2R_7619685_SNP [dm6]	C	A	3.252e^-5	0.306	INTRON CG1358	TF binding site mE1_TFBS_chinmo
2L	9253430	2L_9253430_SNP [dm3] 2L_9253430_SNP [dm6]	T	A	3.297e^-5	0.306	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	17052399	2L_17052399_SNP [dm3] 2L_17052399_SNP [dm6]	G	A	3.321e^-5	0.306	INTERGENIC
3R	12102774	3R_12102774_SNP [dm3] 3R_16277052_SNP [dm6]	T	C	3.332e^-5	0.306	INTRON gish	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9253432	2L_9253432_SNP [dm3] 2L_9253432_SNP [dm6]	A	C	3.332e^-5	0.306	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
2L	9252708	2L_9252708_SNP [dm3] 2L_9252708_SNP [dm6]	G	A	3.340e^-5	0.306	SYNONYMOUS_CODING borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	5483007	2L_5483007_SNP [dm3] 2L_5483007_SNP [dm6]	A	G	3.346e^-5	0.306	INTERGENIC
2L	19915218	2L_19915218_SNP [dm3] 2L_19915218_SNP [dm6]	A	T	3.377e^-5	0.306	INTRON sick	TF binding site mE1_TFBS_bab1
2R	18550755	2R_18550755_SNP [dm3] 2R_22663250_SNP [dm6]	G	A	3.402e^-5	0.306	UPSTREAM CG4250 DOWNSTREAM CG42566 INTERGENIC
2L	17076983	2L_17076983_SNP [dm3] 2L_17076983_SNP [dm6]	A	T	3.411e^-5	0.306	INTERGENIC
2L	6500836	2L_6500836_SNP [dm3] 2L_6500836_SNP [dm6]	C	T	3.415e^-5	0.306	INTRON CG31637
2R	20164145	2R_20164145_SNP [dm3] 2R_24276622_SNP [dm6]	C	T	3.460e^-5	0.309	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad
2L	9255723	2L_9255723_SNP [dm3] 2L_9255723_SNP [dm6]	T	C	3.508e^-5	0.311	UPSTREAM lectin-30A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_z
2R	9631977	2R_9631977_SNP [dm3] 2R_13744472_SNP [dm6]	T	C	3.516e^-5	0.311	INTRON fas
2L	17124388	2L_17124388_SNP [dm3] 2L_17124388_SNP [dm6]	T	A	3.547e^-5	0.312	NON_SYNONYMOUS_CODING CG31784
2R	14520318	2R_14520318_SNP [dm3] 2R_18632813_SNP [dm6]	T	A	3.559e^-5	0.312	UTR_3_PRIME CG30122 UPSTREAM CG5482
3L	12615871	3L_12615871_SNP [dm3] 3L_12622771_SNP [dm6]	G	A	3.579e^-5	0.312	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	11852285	2R_11852285_SNP [dm3] 2R_15964780_SNP [dm6]	T	C	3.596e^-5	0.312	INTRON Strn-Mlck	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
4	718367	4_718367_SNP [dm3] 4_697741_SNP [dm6]	C	T	3.614e^-5	0.312	UTR_5_PRIME ey	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad
2L	9254412	2L_9254412_SNP [dm3] 2L_9254412_SNP [dm6]	G	A	3.639e^-5	0.312	SYNONYMOUS_CODING lectin-30A
X	12291012	X_12291012_SNP [dm3] X_12396979_SNP [dm6]	A	G	3.657e^-5	0.312	INTERGENIC
2R	17298632	2R_17298632_SNP [dm3] 2R_21411127_SNP [dm6]	G	A	3.660e^-5	0.312	INTRON Sdc
2R	7466905	2R_7466905_SNP [dm3] 2R_11579400_SNP [dm6]	T	C	3.686e^-5	0.313	UTR_3_PRIME tou DOWNSTREAM tou
2R	7474883	2R_7474883_SNP [dm3] 2R_11587378_SNP [dm6]	C	T	3.748e^-5	0.317	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	13095860	2R_13095860_SNP [dm3] 2R_17208355_SNP [dm6]	T	A	3.792e^-5	0.317	INTERGENIC
2R	15595000	2R_15595000_SNP [dm3] 2R_19707495_SNP [dm6]	A	G	3.804e^-5	0.317	INTERGENIC	TF binding site mE1_TFBS_cad
X	9986149	X_9986149_SNP [dm3] X_10092116_SNP [dm6]	C	T	3.806e^-5	0.317	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8702506	2R_8702506_SNP [dm3] 2R_12815001_SNP [dm6]	T	C	3.848e^-5	0.318	INTERGENIC
2R	10788778	2R_10788778_SNP [dm3] 2R_14901273_SNP [dm6]	T	C	3.865e^-5	0.318	UTR_3_PRIME Cyp317a1 DOWNSTREAM CG10249 & 1 other
2L	6593875	2L_6593875_SNP [dm3] 2L_6593875_SNP [dm6]	A	T	3.867e^-5	0.318	INTRON CG11319
2R	8702203	2R_8702203_SNP [dm3] 2R_12814698_SNP [dm6]	C	T	3.890e^-5	0.318	INTERGENIC
2R	10517407	2R_10517407_SNP [dm3] 2R_14629902_SNP [dm6]	T	C	3.907e^-5	0.318	UPSTREAM CG10131 INTERGENIC	TF binding site mE1_TFBS_cad
2R	9356079	2R_9356079_SNP [dm3] 2R_13468574_SNP [dm6]	A	C	3.920e^-5	0.318	INTRON arr	TF binding site mE1_TFBS_chinmo
2R	9637298	2R_9637298_SNP [dm3] 2R_13749793_SNP [dm6]	A	C	3.949e^-5	0.319	DOWNSTREAM fas INTERGENIC
2R	17298634	2R_17298634_SNP [dm3] 2R_21411129_SNP [dm6]	T	C	3.976e^-5	0.32	INTRON Sdc
2R	10622222	2R_10622222_SNP [dm3] 2R_14734717_SNP [dm6]	C	T	3.991e^-5	0.32	INTERGENIC
2R	7474782	2R_7474782_SNP [dm3] 2R_11587277_SNP [dm6]	G	T	4.017e^-5	0.321	DOWNSTREAM snoRNA:Psi28S-1936 INTRON tou
2R	20416322	2R_20416322_SNP [dm3] 2R_24528799_SNP [dm6]	T	A	4.074e^-5	0.324	NON_SYNONYMOUS_CODING Brca2 DOWNSTREAM Ir60e	TF binding site mE1_TFBS_HSA
2R	14513507	2R_14513507_SNP [dm3] 2R_18626002_SNP [dm6]	G	T	4.115e^-5	0.325	SYNONYMOUS_CODING Sec6 UPSTREAM Atg7	TF binding site mE1_TFBS_sens
2L	4367576	2L_4367576_SNP [dm3] 2L_4367576_SNP [dm6]	A	G	4.128e^-5	0.325	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	8389638	2L_8389638_SNP [dm3] 2L_8389638_SNP [dm6]	A	T	4.224e^-5	0.331	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
3L	12615695	3L_12615695_SNP [dm3] 3L_12622595_SNP [dm6]	T	C	4.261e^-5	0.333	DOWNSTREAM caup INTERGENIC
2R	9971927	2R_9971927_SNP [dm3] 2R_14084422_SNP [dm6]	A	T	4.318e^-5	0.334	INTRON Prosap	TF binding site mE1_TFBS_bab1
3L	2263668	3L_2263668_SNP [dm3] 3L_2263668_SNP [dm6]	T	A	4.329e^-5	0.334	NON_SYNONYMOUS_CODING ecd DOWNSTREAM CG13807	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	12615701	3L_12615701_SNP [dm3] 3L_12622601_SNP [dm6]	T	A	4.356e^-5	0.334	DOWNSTREAM caup INTERGENIC
2R	12089329	2R_12089329_SNP [dm3] 2R_16201824_SNP [dm6]	G	C	4.371e^-5	0.334	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	12089338	2R_12089338_SNP [dm3] 2R_16201833_SNP [dm6]	G	A	4.371e^-5	0.334	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
3L	3625721	3L_3625721_SNP [dm3] 3L_3625721_SNP [dm6]	C	T	4.377e^-5	0.334	UPSTREAM dar1 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
2L	9253529	2L_9253529_SNP [dm3] 2L_9253529_SNP [dm6]	C	A	4.404e^-5	0.334	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	10588568	2R_10588568_SNP [dm3] 2R_14701063_SNP [dm6]	T	C	4.423e^-5	0.334	INTRON mspo
X	16899044	X_16899044_SNP [dm3] X_17005011_SNP [dm6]	A	G	4.472e^-5	0.334	INTRON CG45002
2R	10927354	2R_10927354_SNP [dm3] 2R_15039849_SNP [dm6]	C	G	4.490e^-5	0.334	SYNONYMOUS_CODING hbs	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2R	12972020	2R_12972020_SNP [dm3] 2R_17084515_SNP [dm6]	G	T	4.497e^-5	0.334	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
X	11992476	X_11992476_SNP [dm3] X_12098443_SNP [dm6]	G	T	4.549e^-5	0.334	INTRON CR43960 & 1 other
3L	12615876	3L_12615876_SNP [dm3] 3L_12622776_SNP [dm6]	A	C	4.598e^-5	0.334	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	18295617	3L_18295617_SNP [dm3] 3L_18302517_SNP [dm6]	T	A	4.598e^-5	0.334	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2L	8389562	2L_8389562_SNP [dm3] 2L_8389562_SNP [dm6]	A	T	4.609e^-5	0.334	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2R	12370458	2R_12370458_SNP [dm3] 2R_16482953_SNP [dm6]	G	T	4.613e^-5	0.334	INTERGENIC
X	4524977	X_4524977_SNP [dm3] X_4630944_SNP [dm6]	G	T	4.616e^-5	0.334	UPSTREAM CG12184 DOWNSTREAM CG12179 INTERGENIC
X	9585042	X_9585042_DEL [dm3] X_9691009_DEL [dm6]	TTA	T	4.619e^-5	0.334	DOWNSTREAM CR44016 INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10688036	2R_10688036_SNP [dm3] 2R_14800531_SNP [dm6]	A	G	4.621e^-5	0.334	INTRON kn	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_eve mE1_TFBS_HSA
3R	12855249	3R_12855249_SNP [dm3] 3R_17029527_SNP [dm6]	T	C	4.657e^-5	0.334	INTRON CG5225	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6001227	2L_6001227_SNP [dm3] 2L_6001227_SNP [dm6]	G	T	4.682e^-5	0.334	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
3R	12365072	3R_12365072_SNP [dm3] 3R_16539350_SNP [dm6]	G	T	4.684e^-5	0.334	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2L	6813292	2L_6813292_SNP [dm3] 2L_6813292_SNP [dm6]	G	C	4.735e^-5	0.334	DOWNSTREAM CR44081 INTERGENIC
2R	10532472	2R_10532472_INS [dm3] 2R_14644967_INS [dm6]	A	AAA	4.750e^-5	0.334	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	18295612	3L_18295612_SNP [dm3] 3L_18302512_SNP [dm6]	T	C	4.772e^-5	0.334	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	17250796	X_17250796_SNP [dm3] X_17356763_SNP [dm6]	G	A	4.774e^-5	0.334	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2R	13095744	2R_13095744_SNP [dm3] 2R_17208239_SNP [dm6]	A	G	4.809e^-5	0.334	INTERGENIC
2R	17185532	2R_17185532_SNP [dm3] 2R_21298027_SNP [dm6]	A	T	4.827e^-5	0.334	UTR_5_PRIME CG42672 INTRON CG42672 EXON CR44724
2L	13501874	2L_13501874_SNP [dm3] 2L_13501874_SNP [dm6]	G	T	4.865e^-5	0.334	UTR_3_PRIME B4 DOWNSTREAM B4
2R	10534606	2R_10534606_SNP [dm3] 2R_14647101_SNP [dm6]	G	A	4.894e^-5	0.334	DOWNSTREAM CG10139 INTERGENIC
3L	15658324	3L_15658324_SNP [dm3] 3L_15665224_SNP [dm6]	T	G	4.909e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10795680	2R_10795680_SNP [dm3] 2R_14908175_SNP [dm6]	T	C	4.918e^-5	0.334	UPSTREAM CG10249 INTRON CG10249	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10676788	2R_10676788_SNP [dm3] 2R_14789283_SNP [dm6]	C	T	4.949e^-5	0.334	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
2R	12971953	2R_12971953_SNP [dm3] 2R_17084448_SNP [dm6]	C	G	4.964e^-5	0.334	INTRON CG30460	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	12615707	3L_12615707_SNP [dm3] 3L_12622607_SNP [dm6]	G	A	4.993e^-5	0.334	DOWNSTREAM caup INTERGENIC
2L	17078756	2L_17078756_SNP [dm3] 2L_17078756_SNP [dm6]	A	T	5.004e^-5	0.334	INTERGENIC
3L	12615604	3L_12615604_SNP [dm3] 3L_12622504_SNP [dm6]	T	A	5.031e^-5	0.334	DOWNSTREAM caup INTERGENIC
2L	8390046	2L_8390046_SNP [dm3] 2L_8390046_SNP [dm6]	G	A	5.035e^-5	0.334	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi
2L	19849334	2L_19849334_SNP [dm3] 2L_19849334_SNP [dm6]	T	C	5.048e^-5	0.334	UPSTREAM sick INTRON sick
2R	15864853	2R_15864853_SNP [dm3] 2R_19977348_SNP [dm6]	G	C	5.085e^-5	0.334	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	13297763	2L_13297763_SNP [dm3] 2L_13297763_SNP [dm6]	G	A	5.118e^-5	0.334	SYNONYMOUS_CODING CG31729 UTR_5_PRIME CG31729	TF binding site mE1_TFBS_sens
2R	8702224	2R_8702224_SNP [dm3] 2R_12814719_SNP [dm6]	G	A	5.136e^-5	0.334	INTERGENIC
X	9986047	X_9986047_SNP [dm3] X_10092014_SNP [dm6]	A	T	5.144e^-5	0.334	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	10341078	2R_10341078_SNP [dm3] 2R_14453573_SNP [dm6]	G	A	5.153e^-5	0.334	INTRON Oaz	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
4	631038	4_631038_SNP [dm3] 4_610412_SNP [dm6]	A	G	5.163e^-5	0.334	UPSTREAM Eph INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	26111233	3R_26111233_SNP [dm3] 3R_30285511_SNP [dm6]	C	A	5.171e^-5	0.334	INTRON hdc
2R	13095940	2R_13095940_SNP [dm3] 2R_17208435_SNP [dm6]	G	A	5.172e^-5	0.334	INTERGENIC
2R	10794500	2R_10794500_SNP [dm3] 2R_14906995_SNP [dm6]	G	A	5.178e^-5	0.334	UPSTREAM CG10249 INTRON CG10249
3L	18295632	3L_18295632_SNP [dm3] 3L_18302532_SNP [dm6]	A	T	5.204e^-5	0.334	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
X	11164117	X_11164117_SNP [dm3] X_11270084_SNP [dm6]	T	C	5.217e^-5	0.334	INTRON CG44422
X	17224614	X_17224614_SNP [dm3] X_17330581_SNP [dm6]	A	G	5.223e^-5	0.334	INTERGENIC
3L	21081888	3L_21081888_SNP [dm3] 3L_21088788_SNP [dm6]	G	A	5.226e^-5	0.334	SYNONYMOUS_CODING CG33285 INTRON ko	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
2R	6949149	2R_6949149_SNP [dm3] 2R_11061644_SNP [dm6]	T	G	5.285e^-5	0.334	INTRON luna
2L	9253421	2L_9253421_MNP [dm3] 2L_9253421_MNP [dm6]	CCC	GAA	5.329e^-5	0.334	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
X	17250853	X_17250853_SNP [dm3] X_17356820_SNP [dm6]	G	T	5.330e^-5	0.334	INTERGENIC
2R	6264867	2R_6264867_SNP [dm3] 2R_10377362_SNP [dm6]	T	A	5.340e^-5	0.334	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b
2L	8906431	2L_8906431_SNP [dm3] 2L_8906431_SNP [dm6]	G	T	5.355e^-5	0.334	INTRON CG34398
2R	9631997	2R_9631997_SNP [dm3] 2R_13744492_SNP [dm6]	T	G	5.360e^-5	0.334	INTRON fas
2L	13154467	2L_13154467_SNP [dm3] 2L_13154467_SNP [dm6]	G	A	5.370e^-5	0.334	INTERGENIC
X	8451556	X_8451556_SNP [dm3] X_8557523_SNP [dm6]	C	T	5.374e^-5	0.334	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	13501861	2L_13501861_SNP [dm3] 2L_13501861_SNP [dm6]	A	T	5.375e^-5	0.334	UTR_3_PRIME B4 DOWNSTREAM B4
3L	12615703	3L_12615703_MNP [dm3] 3L_12622603_MNP [dm6]	TAA	ATT	5.385e^-5	0.334	DOWNSTREAM caup INTERGENIC
2R	10786122	2R_10786122_SNP [dm3] 2R_14898617_SNP [dm6]	C	A	5.418e^-5	0.335	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
X	14228810	X_14228810_SNP [dm3] X_14334777_SNP [dm6]	G	C	5.448e^-5	0.336	INTRON dpr8
2R	9955367	2R_9955367_SNP [dm3] 2R_14067862_SNP [dm6]	C	T	5.486e^-5	0.337	INTRON Prosap
2R	15194775	2R_15194775_SNP [dm3] 2R_19307270_SNP [dm6]	C	T	5.533e^-5	0.339	UTR_3_PRIME CG7461 DOWNSTREAM EndoB & 1 other
3L	12615882	3L_12615882_SNP [dm3] 3L_12622782_SNP [dm6]	T	C	5.553e^-5	0.339	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	7475985	2R_7475985_SNP [dm3] 2R_11588480_SNP [dm6]	G	T	5.617e^-5	0.341	SYNONYMOUS_CODING tou UPSTREAM snoRNA:Psi28S-1936	TF binding site mE1_TFBS_cad
X	13875980	X_13875980_SNP [dm3] X_13981947_SNP [dm6]	T	C	5.642e^-5	0.341	INTRON mamo
2R	6858494	2R_6858494_SNP [dm3] 2R_10970989_SNP [dm6]	T	A	5.651e^-5	0.341	INTERGENIC
2R	13674857	2R_13674857_SNP [dm3] 2R_17787352_SNP [dm6]	C	T	5.658e^-5	0.341	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2L	9251405	2L_9251405_SNP [dm3] 2L_9251405_SNP [dm6]	T	C	5.671e^-5	0.341	UPSTREAM aust DOWNSTREAM borr EXON CR43734
3R	13487331	3R_13487331_SNP [dm3] 3R_17661609_SNP [dm6]	A	G	5.699e^-5	0.342	SYNONYMOUS_CODING CG14322	TF binding site mE1_TFBS_sens
3R	12365050	3R_12365050_DEL [dm3] 3R_16539328_DEL [dm6]	GTGTG	G	5.735e^-5	0.342	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12615793	3L_12615793_SNP [dm3] 3L_12622693_SNP [dm6]	T	G	5.747e^-5	0.342	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	1891774	2L_1891774_SNP [dm3] 2L_1891774_SNP [dm6]	T	A	5.754e^-5	0.342	INTRON CG7337
2L	11314735	2L_11314735_SNP [dm3] 2L_11314735_SNP [dm6]	T	C	5.846e^-5	0.346	INTERGENIC
X	9986033	X_9986033_SNP [dm3] X_10092000_SNP [dm6]	A	T	5.925e^-5	0.349	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6001191	2L_6001191_SNP [dm3] 2L_6001191_SNP [dm6]	C	T	5.946e^-5	0.349	SYNONYMOUS_CODING Tsp26A INTRON Tsp26A	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
X	17258360	X_17258360_SNP [dm3] X_17364327_SNP [dm6]	T	G	5.950e^-5	0.349	INTERGENIC
X	9986082	X_9986082_SNP [dm3] X_10092049_SNP [dm6]	T	G	5.983e^-5	0.35	INTRON RhoU	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	11410740	2R_11410740_SNP [dm3] 2R_15523235_SNP [dm6]	A	T	6.014e^-5	0.35	SYNONYMOUS_CODING Khc-73	TF binding site mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	10543952	2R_10543952_SNP [dm3] 2R_14656447_SNP [dm6]	T	C	6.091e^-5	0.352	DOWNSTREAM Adgf-E INTERGENIC
2R	15195155	2R_15195155_SNP [dm3] 2R_19307650_SNP [dm6]	A	G	6.093e^-5	0.352	UTR_3_PRIME EndoB DOWNSTREAM CG7461
2R	17051707	2R_17051707_SNP [dm3] 2R_21164202_SNP [dm6]	C	T	6.100e^-5	0.352	SYNONYMOUS_CODING CG4266 UTR_3_PRIME CG4266	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	4320014	2L_4320014_SNP [dm3] 2L_4320014_SNP [dm6]	T	C	6.135e^-5	0.352	SYNONYMOUS_CODING tutl UTR_3_PRIME tutl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	18295639	3L_18295639_SNP [dm3] 3L_18302539_SNP [dm6]	T	A	6.139e^-5	0.352	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	13095433	2R_13095433_SNP [dm3] 2R_17207928_SNP [dm6]	T	A	6.158e^-5	0.352	INTERGENIC
2R	15861441	2R_15861441_SNP [dm3] 2R_19973936_SNP [dm6]	A	G	6.187e^-5	0.353	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
3L	15658348	3L_15658348_SNP [dm3] 3L_15665248_SNP [dm6]	C	A	6.276e^-5	0.357	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
X	7884595	X_7884595_SNP [dm3] X_7990562_SNP [dm6]	C	T	6.329e^-5	0.359	INTERGENIC
X	16899067	X_16899067_SNP [dm3] X_17005034_SNP [dm6]	A	G	6.348e^-5	0.359	INTRON CG45002
3L	1267036	3L_1267036_SNP [dm3] 3L_1267036_SNP [dm6]	C	A	6.394e^-5	0.36	INTRON CG9134
3L	2032843	3L_2032843_DEL [dm3] 3L_2032843_DEL [dm6]	AA	A	6.404e^-5	0.36	INTERGENIC
2R	4980022	2R_4980022_SNP [dm3] 2R_9092517_SNP [dm6]	T	A	6.487e^-5	0.362	UTR_5_PRIME CG8080 UTR_3_PRIME CG13741 UPSTREAM CG8080	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
X	15060290	X_15060290_SNP [dm3] X_15166257_SNP [dm6]	C	A	6.502e^-5	0.362	INTERGENIC
2L	2406901	2L_2406901_SNP [dm3] 2L_2406901_SNP [dm6]	T	C	6.532e^-5	0.362	INTRON VGlut
2L	2406876	2L_2406876_SNP [dm3] 2L_2406876_SNP [dm6]	C	T	6.551e^-5	0.362	INTRON VGlut
2R	10786028	2R_10786028_SNP [dm3] 2R_14898523_SNP [dm6]	G	A	6.602e^-5	0.362	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	17944451	2L_17944451_SNP [dm3] 2L_17944451_SNP [dm6]	G	T	6.611e^-5	0.362	INTERGENIC
X	12342193	X_12342193_SNP [dm3] X_12448160_SNP [dm6]	G	C	6.682e^-5	0.362	INTRON Pkcdelta
2R	10786021	2R_10786021_SNP [dm3] 2R_14898516_SNP [dm6]	C	T	6.710e^-5	0.362	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
X	9063578	X_9063578_SNP [dm3] X_9169545_SNP [dm6]	C	T	6.719e^-5	0.362	SYNONYMOUS_CODING mei-P26	TF binding site mE1_TFBS_HSA
2L	17204220	2L_17204220_SNP [dm3] 2L_17204220_SNP [dm6]	C	A	6.723e^-5	0.362	INTRON beat-IIIc
2R	10788618	2R_10788618_SNP [dm3] 2R_14901113_SNP [dm6]	G	A	6.762e^-5	0.362	UTR_3_PRIME Cyp317a1 DOWNSTREAM CG10249 & 1 other
2R	6264677	2R_6264677_SNP [dm3] 2R_10377172_SNP [dm6]	A	G	6.769e^-5	0.362	UTR_3_PRIME Ir47a INTRON CG42732 EXON Ir47b	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	18554420	2L_18554420_SNP [dm3] 2L_18554420_SNP [dm6]	G	C	6.782e^-5	0.362	INTRON Pde11
X	19068774	X_19068774_SNP [dm3] X_19174741_SNP [dm6]	C	A	6.822e^-5	0.362	EXON pncr004:X
3R	25800573	3R_25800573_SNP [dm3] 3R_29974851_SNP [dm6]	A	G	6.825e^-5	0.362	INTERGENIC
2R	5147669	2R_5147669_INS [dm3] 2R_9260164_INS [dm6]	A	AA	6.846e^-5	0.362	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
X	7807594	X_7807594_SNP [dm3] X_7913561_SNP [dm6]	G	A	6.850e^-5	0.362	SYNONYMOUS_CODING snz
X	7807023	X_7807023_SNP [dm3] X_7912990_SNP [dm6]	A	G	6.853e^-5	0.362	INTRON snz	TF binding site BDTNP1_TFBS_dl mE1_TFBS_sens
X	7807540	X_7807540_SNP [dm3] X_7913507_SNP [dm6]	A	G	6.853e^-5	0.362	SYNONYMOUS_CODING snz
3L	8225070	3L_8225070_SNP [dm3] 3L_8231970_SNP [dm6]	T	C	6.863e^-5	0.362	SYNONYMOUS_CODING CG7213 DOWNSTREAM CR43953
X	5097610	X_5097610_INS [dm3] X_5203577_INS [dm6]	T	TT	6.883e^-5	0.362	INTRON CG15465 & 1 other
2R	10787515	2R_10787515_SNP [dm3] 2R_14900010_SNP [dm6]	A	G	6.909e^-5	0.362	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	5147666	2R_5147666_SNP [dm3] 2R_9260161_SNP [dm6]	C	T	6.919e^-5	0.362	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
3L	12710752	3L_12710752_SNP [dm3] 3L_12717652_SNP [dm6]	G	A	6.954e^-5	0.362	INTERGENIC
2L	3691565	2L_3691565_INS [dm3] 2L_3691565_INS [dm6]	C	CC	6.972e^-5	0.362	UTR_3_PRIME CG34340 DOWNSTREAM CG16704
3L	10749415	3L_10749415_SNP [dm3] 3L_10756315_SNP [dm6]	T	A	6.992e^-5	0.362	INTERGENIC
2L	10870330	2L_10870330_SNP [dm3] 2L_10870330_SNP [dm6]	A	T	7.011e^-5	0.362	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
X	9619832	X_9619832_SNP [dm3] X_9725799_SNP [dm6]	A	T	7.033e^-5	0.362	INTERGENIC
3L	12615605	3L_12615605_SNP [dm3] 3L_12622505_SNP [dm6]	C	A	7.042e^-5	0.362	DOWNSTREAM caup INTERGENIC
2L	6218399	2L_6218399_SNP [dm3] 2L_6218399_SNP [dm6]	G	A	7.047e^-5	0.362	INTERGENIC
2R	15436212	2R_15436212_SNP [dm3] 2R_19548707_SNP [dm6]	C	T	7.052e^-5	0.362	INTRON sm
2R	10786031	2R_10786031_SNP [dm3] 2R_14898526_SNP [dm6]	A	G	7.075e^-5	0.363	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2R	4979138	2R_4979138_SNP [dm3] 2R_9091633_SNP [dm6]	T	C	7.149e^-5	0.364	NON_SYNONYMOUS_CODING CG8080 DOWNSTREAM CG13741
2R	10622212	2R_10622212_SNP [dm3] 2R_14734707_SNP [dm6]	G	A	7.173e^-5	0.364	INTERGENIC
2L	2425087	2L_2425087_SNP [dm3] 2L_2425087_SNP [dm6]	G	A	7.210e^-5	0.364	DOWNSTREAM CG9886 & 1 other INTERGENIC
X	12262403	X_12262403_SNP [dm3] X_12368370_SNP [dm6]	G	C	7.226e^-5	0.364	INTERGENIC
3R	23726183	3R_23726183_DEL [dm3] 3R_27900461_DEL [dm6]	AA	A	7.227e^-5	0.364	INTRON CG34353
2L	17937494	2L_17937494_SNP [dm3] 2L_17937494_SNP [dm6]	C	G	7.242e^-5	0.364	INTERGENIC
3L	1237134	3L_1237134_SNP [dm3] 3L_1237134_SNP [dm6]	T	C	7.251e^-5	0.364	UTR_3_PRIME CG9192 INTRON CG9194
2L	9303748	2L_9303748_INS [dm3] 2L_9303748_INS [dm6]	G	GTCGTGGCAATG...	7.274e^-5	0.364	DOWNSTREAM CR42844 INTERGENIC
X	15060338	X_15060338_SNP [dm3] X_15166305_SNP [dm6]	T	G	7.281e^-5	0.364	INTERGENIC
2R	13095963	2R_13095963_SNP [dm3] 2R_17208458_SNP [dm6]	T	G	7.441e^-5	0.371	INTERGENIC
2L	8390049	2L_8390049_SNP [dm3] 2L_8390049_SNP [dm6]	C	T	7.447e^-5	0.371	UTR_3_PRIME CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1785024	2L_1785024_SNP [dm3] 2L_1785024_SNP [dm6]	C	T	7.504e^-5	0.372	SYNONYMOUS_CODING Gr22e
X	18347184	X_18347184_SNP [dm3] X_18453151_SNP [dm6]	G	C	7.545e^-5	0.372	INTRON CG32547
X	6712696	X_6712696_SNP [dm3] X_6818663_SNP [dm6]	C	T	7.557e^-5	0.372	UTR_3_PRIME Nf-YC DOWNSTREAM iav	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	12342195	X_12342195_SNP [dm3] X_12448162_SNP [dm6]	T	C	7.569e^-5	0.372	INTRON Pkcdelta
3L	12615709	3L_12615709_SNP [dm3] 3L_12622609_SNP [dm6]	G	A	7.616e^-5	0.372	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	13095391	2R_13095391_SNP [dm3] 2R_17207886_SNP [dm6]	T	C	7.636e^-5	0.372	INTERGENIC
X	20949099	X_20949099_SNP [dm3] X_21078072_SNP [dm6]	G	T	7.637e^-5	0.372	UTR_3_PRIME bves INTRON bves
2L	8396799	2L_8396799_SNP [dm3] 2L_8396799_SNP [dm6]	G	T	7.651e^-5	0.372	SYNONYMOUS_CODING CG13385 UPSTREAM Peritrophin-15a	TF binding site mE1_TFBS_cad
3L	13933044	3L_13933044_SNP [dm3] 3L_13939944_SNP [dm6]	G	T	7.651e^-5	0.372	INTRON CG32137
3L	1267628	3L_1267628_SNP [dm3] 3L_1267628_SNP [dm6]	C	A	7.716e^-5	0.372	INTRON CG9134
2L	20827801	2L_20827801_SNP [dm3] 2L_20827801_SNP [dm6]	G	A	7.727e^-5	0.372	DOWNSTREAM CG9331 INTERGENIC
2L	18554441	2L_18554441_SNP [dm3] 2L_18554441_SNP [dm6]	C	T	7.728e^-5	0.372	INTRON Pde11
2R	10171323	2R_10171323_SNP [dm3] 2R_14283818_SNP [dm6]	A	G	7.767e^-5	0.372	INTRON Ih
X	4525262	X_4525262_SNP [dm3] X_4631229_SNP [dm6]	C	T	7.774e^-5	0.372	UTR_3_PRIME CG12179 UPSTREAM CG12184 DOWNSTREAM CG12179	transposable element FlyBase
2R	10787548	2R_10787548_SNP [dm3] 2R_14900043_SNP [dm6]	A	G	7.780e^-5	0.372	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
4	635773	4_635773_SNP [dm3] 4_615147_SNP [dm6]	T	A	7.828e^-5	0.373	NON_SYNONYMOUS_CODING Eph
X	20419387	X_20419387_DEL [dm3] X_20548360_DEL [dm6]	TT	T	7.828e^-5	0.373	INTRON RunxB
3L	1242587	3L_1242587_SNP [dm3] 3L_1242587_SNP [dm6]	T	C	7.872e^-5	0.374	SYNONYMOUS_CODING Klp61F DOWNSTREAM CG9194	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	3235030	2R_3235030_SNP [dm3] 2R_7347525_SNP [dm6]	T	C	7.899e^-5	0.374	SYNONYMOUS_CODING Dscam1 INTRON Dscam1
2L	14012120	2L_14012120_SNP [dm3] 2L_14012120_SNP [dm6]	A	G	7.994e^-5	0.378	UPSTREAM bgm INTERGENIC	TF binding site mE1_TFBS_inv
2R	16099234	2R_16099234_SNP [dm3] 2R_20211729_SNP [dm6]	C	A	8.027e^-5	0.378	NON_SYNONYMOUS_CODING CG16894
4	394441	4_394441_SNP [dm3] 4_373815_SNP [dm6]	C	T	8.036e^-5	0.378	UTR_3_PRIME Hcf	transposable element FlyBase
3R	25403380	3R_25403380_SNP [dm3] 3R_29577658_SNP [dm6]	T	A	8.053e^-5	0.378	INTERGENIC
2R	9329257	2R_9329257_SNP [dm3] 2R_13441752_SNP [dm6]	A	C	8.175e^-5	0.382	SYNONYMOUS_CODING cnn	TF binding site mE1_TFBS_cad
2L	9259372	2L_9259372_SNP [dm3] 2L_9259372_SNP [dm6]	C	A	8.186e^-5	0.382	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
3R	12044800	3R_12044800_SNP [dm3] 3R_16219078_SNP [dm6]	A	C	8.261e^-5	0.383	INTERGENIC
2R	10532453	2R_10532453_SNP [dm3] 2R_14644948_SNP [dm6]	A	G	8.268e^-5	0.383	UPSTREAM CG10139 INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	5147663	2R_5147663_SNP [dm3] 2R_9260158_SNP [dm6]	T	A	8.279e^-5	0.383	DOWNSTREAM CG34141 INTRON Pkn	TF binding site mE1_TFBS_cad
2R	10786143	2R_10786143_SNP [dm3] 2R_14898638_SNP [dm6]	T	A	8.286e^-5	0.383	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3L	10650415	3L_10650415_SNP [dm3] 3L_10657315_SNP [dm6]	G	T	8.335e^-5	0.384	INTRON CG32066	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Kr
2R	14222022	2R_14222022_SNP [dm3] 2R_18334517_SNP [dm6]	G	A	8.452e^-5	0.388	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	16198122	2R_16198122_SNP [dm3] 2R_20310617_SNP [dm6]	A	G	8.466e^-5	0.388	SYNONYMOUS_CODING CG13868	TF binding site BDTNP1_TFBS_sna mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	9259041	2L_9259041_SNP [dm3] 2L_9259041_SNP [dm6]	T	A	8.477e^-5	0.388	INTRON Ggamma30A
3R	13766866	3R_13766866_SNP [dm3] 3R_17941144_SNP [dm6]	A	G	8.516e^-5	0.389	INTRON cpo	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	20416459	2R_20416459_SNP [dm3] 2R_24528936_SNP [dm6]	C	T	8.625e^-5	0.392	SYNONYMOUS_CODING Brca2 DOWNSTREAM Ir60e	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10608268	2R_10608268_SNP [dm3] 2R_14720763_SNP [dm6]	T	C	8.632e^-5	0.392	INTERGENIC
2R	6786770	2R_6786770_SNP [dm3] 2R_10899265_SNP [dm6]	C	T	8.730e^-5	0.396	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2L	3320269	2L_3320269_SNP [dm3] 2L_3320269_SNP [dm6]	A	G	8.778e^-5	0.397	UTR_5_PRIME CG8837 UPSTREAM CG3326	TF binding site mE1_TFBS_HSA
3L	13346070	3L_13346070_SNP [dm3] 3L_13352970_SNP [dm6]	G	A	8.848e^-5	0.399	SYNONYMOUS_CODING CG17687
3L	885475	3L_885475_SNP [dm3] 3L_885475_SNP [dm6]	T	C	8.867e^-5	0.399	INTRON CG32479
2R	7929587	2R_7929587_SNP [dm3] 2R_12042082_SNP [dm6]	G	A	8.919e^-5	0.4	SYNONYMOUS_CODING RpIII128
2R	10786139	2R_10786139_SNP [dm3] 2R_14898634_SNP [dm6]	C	A	9.073e^-5	0.406	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2L	11314737	2L_11314737_SNP [dm3] 2L_11314737_SNP [dm6]	T	C	9.109e^-5	0.407	INTERGENIC
2L	2406896	2L_2406896_SNP [dm3] 2L_2406896_SNP [dm6]	A	T	9.160e^-5	0.408	INTRON VGlut
3L	5566353	3L_5566353_SNP [dm3] 3L_5573253_SNP [dm6]	A	G	9.199e^-5	0.409	INTRON Msr-110
2L	2326236	2L_2326236_SNP [dm3] 2L_2326236_SNP [dm6]	A	G	9.258e^-5	0.41	INTRON CG9967 & 1 other
2R	18985660	2R_18985660_DEL [dm3] 2R_23098137_DEL [dm6]	CA	C	9.294e^-5	0.41	INTERGENIC
2R	19943498	2R_19943498_SNP [dm3] 2R_24055975_SNP [dm6]	C	A	9.307e^-5	0.41	NON_SYNONYMOUS_CODING CG13563 INTRON ppk29	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_sens
2L	9258365	2L_9258365_SNP [dm3] 2L_9258365_SNP [dm6]	A	C	9.316e^-5	0.41	INTRON Ggamma30A
2R	20415328	2R_20415328_SNP [dm3] 2R_24527805_SNP [dm6]	A	G	9.325e^-5	0.41	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_sens
2L	3791707	2L_3791707_SNP [dm3] 2L_3791707_SNP [dm6]	G	A	9.364e^-5	0.41	INTRON CG3921
2L	9378551	2L_9378551_SNP [dm3] 2L_9378551_SNP [dm6]	C	A	9.423e^-5	0.412	INTRON Shawl
2R	10585662	2R_10585662_SNP [dm3] 2R_14698157_SNP [dm6]	A	C	9.471e^-5	0.412	INTRON mspo
2L	14392330	2L_14392330_SNP [dm3] 2L_14392330_SNP [dm6]	G	A	9.471e^-5	0.412	SYNONYMOUS_CODING elB	TF binding site mE1_TFBS_chinmo
2L	9257288	2L_9257288_SNP [dm3] 2L_9257288_SNP [dm6]	C	T	9.480e^-5	0.412	INTRON Ggamma30A	TF binding site BDTNP1_TFBS_z mE1_TFBS_Trl
2L	10870335	2L_10870335_SNP [dm3] 2L_10870335_SNP [dm6]	T	A	9.537e^-5	0.412	NON_SYNONYMOUS_CODING CG12517 UPSTREAM CR45453	TF binding site mE1_TFBS_inv
2R	10760730	2R_10760730_SNP [dm3] 2R_14873225_SNP [dm6]	C	G	9.544e^-5	0.412	SYNONYMOUS_CODING Cyp6a22 UPSTREAM Cyp6a17
2L	9253367	2L_9253367_SNP [dm3] 2L_9253367_SNP [dm6]	A	T	9.555e^-5	0.412	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl
3L	14156348	3L_14156348_SNP [dm3] 3L_14163248_SNP [dm6]	C	A	9.579e^-5	0.412	INTERGENIC	regulatory region REDfly_CRMs TF binding site mE1_TFBS_HSA
2R	8717228	2R_8717228_SNP [dm3] 2R_12829723_SNP [dm6]	G	A	9.606e^-5	0.412	INTERGENIC
2R	10873206	2R_10873206_SNP [dm3] 2R_14985701_SNP [dm6]	G	A	9.635e^-5	0.413	INTRON pcs	TF binding site mE1_TFBS_cad
3L	4435609	3L_4435609_SNP [dm3] 3L_4435609_SNP [dm6]	C	T	9.737e^-5	0.416	UTR_3_PRIME nAChRbeta1
2R	3521945	2R_3521945_SNP [dm3] 2R_7634440_SNP [dm6]	C	A	9.819e^-5	0.419	DOWNSTREAM CG43341 INTRON CG43340 EXON CR45131
2R	18772370	2R_18772370_SNP [dm3] 2R_22884847_SNP [dm6]	C	T	9.858e^-5	0.419	INTRON CG3499	TF binding site mE1_TFBS_cad
4	689448	4_689448_SNP [dm3] 4_668822_SNP [dm6]	A	C	9.885e^-5	0.419	INTRON Slip1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7794003	3L_7794003_SNP [dm3] 3L_7800903_SNP [dm6]	G	A	9.934e^-5	0.419	INTRON CG32369
3L	7794059	3L_7794059_SNP [dm3] 3L_7800959_SNP [dm6]	A	T	9.934e^-5	0.419	INTRON CG32369
2R	20164250	2R_20164250_SNP [dm3] 2R_24276727_SNP [dm6]	C	T	9.959e^-5	0.419	INTRON nvy	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad
2R	10787521	2R_10787521_SNP [dm3] 2R_14900016_SNP [dm6]	C	T	9.978e^-5	0.419	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2L	9261424	2L_9261424_SNP [dm3] 2L_9261424_SNP [dm6]	G	A	1.001e^-4	0.419	DOWNSTREAM CR45262 INTRON Ggamma30A
3L	15658306	3L_15658306_SNP [dm3] 3L_15665206_SNP [dm6]	G	A	1.003e^-4	0.419	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9260169	2L_9260169_SNP [dm3] 2L_9260169_SNP [dm6]	T	C	1.003e^-4	0.419	INTRON Ggamma30A
3R	14122915	3R_14122915_SNP [dm3] 3R_18297193_SNP [dm6]	G	A	1.007e^-4	0.419	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2R	10676796	2R_10676796_SNP [dm3] 2R_14789291_SNP [dm6]	A	T	1.009e^-4	0.419	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
3R	12365045	3R_12365045_SNP [dm3] 3R_16539323_SNP [dm6]	T	C	1.011e^-4	0.419	INTRON CG42342	TF binding site BDTNP1_TFBS_da mE1_TFBS_chinmo mE1_TFBS_HSA
2R	10763630	2R_10763630_SNP [dm3] 2R_14876125_SNP [dm6]	G	C	1.016e^-4	0.421	NON_SYNONYMOUS_CODING Cyp6a23 DOWNSTREAM Cyp6a17
2L	2494319	2L_2494319_SNP [dm3] 2L_2494319_SNP [dm6]	A	G	1.025e^-4	0.423	INTRON oaf	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_slp1 BDTNP1_TFBS_twi mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_Trl
X	20587360	X_20587360_SNP [dm3] X_20716333_SNP [dm6]	A	T	1.028e^-4	0.423	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2R	9176330	2R_9176330_SNP [dm3] 2R_13288825_SNP [dm6]	A	T	1.032e^-4	0.423	INTRON Dh31-R
2R	10572926	2R_10572926_SNP [dm3] 2R_14685421_SNP [dm6]	T	A	1.032e^-4	0.423	INTRON mspo
2R	10700192	2R_10700192_SNP [dm3] 2R_14812687_SNP [dm6]	G	C	1.036e^-4	0.423	INTERGENIC	regulatory region REDfly_CRMs
2R	10700592	2R_10700592_SNP [dm3] 2R_14813087_SNP [dm6]	G	A	1.036e^-4	0.423	INTERGENIC
2R	12370530	2R_12370530_SNP [dm3] 2R_16483025_SNP [dm6]	C	T	1.041e^-4	0.424	INTERGENIC
2L	2600115	2L_2600115_SNP [dm3] 2L_2600115_SNP [dm6]	G	A	1.054e^-4	0.424	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2L	2406891	2L_2406891_SNP [dm3] 2L_2406891_SNP [dm6]	C	T	1.055e^-4	0.424	INTRON VGlut
2R	19171979	2R_19171979_SNP [dm3] 2R_23284456_SNP [dm6]	C	T	1.056e^-4	0.424	SYNONYMOUS_CODING CG13541 UPSTREAM CG3124
2R	15594368	2R_15594368_SNP [dm3] 2R_19706863_SNP [dm6]	G	A	1.056e^-4	0.424	INTERGENIC	TF binding site mE1_TFBS_cad
2R	10608264	2R_10608264_SNP [dm3] 2R_14720759_SNP [dm6]	C	A	1.063e^-4	0.424	INTERGENIC
2R	4971530	2R_4971530_SNP [dm3] 2R_9084025_SNP [dm6]	T	C	1.063e^-4	0.424	SPLICE_SITE_REGION CNT1 DOWNSTREAM CG13742 INTRON CNT1
2L	9440069	2L_9440069_SNP [dm3] 2L_9440069_SNP [dm6]	T	C	1.063e^-4	0.424	NON_SYNONYMOUS_CODING CG33723 INTRON numb
2L	18731011	2L_18731011_INS [dm3] 2L_18731011_INS [dm6]	G	GTTG	1.065e^-4	0.424	UTR_5_PRIME CG10348
2L	9252592	2L_9252592_SNP [dm3] 2L_9252592_SNP [dm6]	C	G	1.065e^-4	0.424	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	7841943	3L_7841943_SNP [dm3] 3L_7848843_SNP [dm6]	A	G	1.066e^-4	0.424	INTRON Pdp1	regulatory region REDfly_CRMs
X	12342190	X_12342190_SNP [dm3] X_12448157_SNP [dm6]	A	G	1.068e^-4	0.424	INTRON Pkcdelta
2L	2918575	2L_2918575_SNP [dm3] 2L_2918575_SNP [dm6]	A	T	1.072e^-4	0.424	INTRON lilli
2R	7473616	2R_7473616_SNP [dm3] 2R_11586111_SNP [dm6]	G	A	1.072e^-4	0.424	SYNONYMOUS_CODING tou
2R	10676777	2R_10676777_SNP [dm3] 2R_14789272_SNP [dm6]	C	T	1.074e^-4	0.424	INTRON kn	TF binding site mE1_TFBS_inv mE1_TFBS_sens
X	3277717	X_3277717_SNP [dm3] X_3383684_SNP [dm6]	C	A	1.074e^-4	0.424	INTRON dm & 1 other
3L	18014302	3L_18014302_SNP [dm3] 3L_18021202_SNP [dm6]	G	A	1.078e^-4	0.425	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2R	10371677	2R_10371677_SNP [dm3] 2R_14484172_SNP [dm6]	G	T	1.080e^-4	0.425	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	7757582	2L_7757582_SNP [dm3] 2L_7757582_SNP [dm6]	T	C	1.086e^-4	0.426	DOWNSTREAM CG14538 INTRON CG7196
3R	14122929	3R_14122929_SNP [dm3] 3R_18297207_SNP [dm6]	G	A	1.098e^-4	0.43	INTRON l_3_05822	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9259433	2L_9259433_SNP [dm3] 2L_9259433_SNP [dm6]	C	T	1.104e^-4	0.431	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	10846124	2R_10846124_SNP [dm3] 2R_14958619_SNP [dm6]	T	C	1.107e^-4	0.431	UPSTREAM aPKC INTRON aPKC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
3R	25403537	3R_25403537_INS [dm3] 3R_29577815_INS [dm6]	G	GAG	1.117e^-4	0.435	INTERGENIC	TF binding site mE1_TFBS_sens
3L	18295609	3L_18295609_SNP [dm3] 3L_18302509_SNP [dm6]	A	G	1.120e^-4	0.435	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	14523217	2R_14523217_SNP [dm3] 2R_18635712_SNP [dm6]	G	T	1.129e^-4	0.437	INTRON CG30122	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3R	12948734	3R_12948734_SNP [dm3] 3R_17123012_SNP [dm6]	G	T	1.134e^-4	0.437	UPSTREAM cher DOWNSTREAM CG42779 INTRON cher
2L	9259902	2L_9259902_DEL [dm3] 2L_9259902_DEL [dm6]	CTCTTC	C	1.135e^-4	0.437	INTRON Ggamma30A
3L	15658329	3L_15658329_SNP [dm3] 3L_15665229_SNP [dm6]	T	C	1.135e^-4	0.437	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	9259419	2L_9259419_SNP [dm3] 2L_9259419_SNP [dm6]	C	G	1.136e^-4	0.437	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2R	20423301	2R_20423301_SNP [dm3] 2R_24535778_SNP [dm6]	T	A	1.139e^-4	0.437	UPSTREAM CG11413 & 1 other INTRON CG4622	TF binding site BDTNP1_TFBS_dl
3L	1237137	3L_1237137_SNP [dm3] 3L_1237137_SNP [dm6]	G	T	1.144e^-4	0.438	UTR_3_PRIME CG9192 INTRON CG9194
X	6898800	X_6898800_SNP [dm3] X_7004767_SNP [dm6]	T	A	1.155e^-4	0.441	START_GAINED Inx7 UTR_5_PRIME Inx7 DOWNSTREAM Inx2
2R	10608287	2R_10608287_SNP [dm3] 2R_14720782_SNP [dm6]	T	C	1.158e^-4	0.441	INTERGENIC
2R	8702250	2R_8702250_SNP [dm3] 2R_12814745_SNP [dm6]	G	A	1.162e^-4	0.441	INTERGENIC
2R	18358555	2R_18358555_SNP [dm3] 2R_22471050_SNP [dm6]	T	C	1.164e^-4	0.441	SYNONYMOUS_CODING CG10384	TF binding site mE1_TFBS_chinmo
2L	2406893	2L_2406893_SNP [dm3] 2L_2406893_SNP [dm6]	A	T	1.166e^-4	0.441	INTRON VGlut
X	7884490	X_7884490_SNP [dm3] X_7990457_SNP [dm6]	G	A	1.167e^-4	0.441	INTERGENIC
2L	2406902	2L_2406902_SNP [dm3] 2L_2406902_SNP [dm6]	T	A	1.171e^-4	0.441	INTRON VGlut
2R	13243323	2R_13243323_SNP [dm3] 2R_17355818_SNP [dm6]	A	G	1.172e^-4	0.441	INTRON mbl
2R	17301624	2R_17301624_SNP [dm3] 2R_21414119_SNP [dm6]	A	C	1.174e^-4	0.441	INTRON Sdc
2R	12089320	2R_12089320_SNP [dm3] 2R_16201815_SNP [dm6]	C	T	1.179e^-4	0.442	SYNONYMOUS_CODING shark	TF binding site mE1_TFBS_chinmo
2R	7476157	2R_7476157_SNP [dm3] 2R_11588652_SNP [dm6]	A	T	1.182e^-4	0.443	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
2R	7465762	2R_7465762_SNP [dm3] 2R_11578257_SNP [dm6]	G	C	1.192e^-4	0.445	UTR_3_PRIME tou DOWNSTREAM tou	TF binding site mE1_TFBS_HSA
2R	10585596	2R_10585596_SNP [dm3] 2R_14698091_SNP [dm6]	A	T	1.193e^-4	0.445	INTRON mspo
2R	13674877	2R_13674877_SNP [dm3] 2R_17787372_SNP [dm6]	T	C	1.198e^-4	0.445	SYNONYMOUS_CODING aft	TF binding site mE1_TFBS_eve mE1_TFBS_HSA mE1_TFBS_sens
2R	17776102	2R_17776102_INS [dm3] 2R_21888597_INS [dm6]	A	AT	1.200e^-4	0.445	INTRON Fili
2R	13521665	2R_13521665_SNP [dm3] 2R_17634160_SNP [dm6]	T	A	1.201e^-4	0.445	UTR_5_PRIME Oxp UPSTREAM rhi INTRON CG10936	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	20423302	2R_20423302_SNP [dm3] 2R_24535779_SNP [dm6]	A	T	1.205e^-4	0.446	UPSTREAM CG11413 & 1 other INTRON CG4622	TF binding site BDTNP1_TFBS_dl
3L	12711018	3L_12711018_SNP [dm3] 3L_12717918_SNP [dm6]	C	A	1.210e^-4	0.446	INTERGENIC
2R	10008263	2R_10008263_SNP [dm3] 2R_14120758_SNP [dm6]	A	G	1.210e^-4	0.446	INTRON Prosap	TF binding site BDTNP1_TFBS_prd mE1_TFBS_HSA
3L	8599381	3L_8599381_SNP [dm3] 3L_8606281_SNP [dm6]	G	C	1.212e^-4	0.446	INTRON CG6282
2L	9878286	2L_9878286_SNP [dm3] 2L_9878286_SNP [dm6]	G	C	1.214e^-4	0.446	INTRON nAChRalpha6
2L	8390546	2L_8390546_SNP [dm3] 2L_8390546_SNP [dm6]	T	C	1.220e^-4	0.447	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	18050570	2R_18050570_SNP [dm3] 2R_22163065_SNP [dm6]	A	C	1.234e^-4	0.451	NON_SYNONYMOUS_CODING a DOWNSTREAM CG34206	TF binding site mE1_TFBS_cad
2R	14222034	2R_14222034_SNP [dm3] 2R_18334529_SNP [dm6]	A	C	1.235e^-4	0.451	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	15658302	3L_15658302_SNP [dm3] 3L_15665202_SNP [dm6]	A	T	1.248e^-4	0.455	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3R	14972226	3R_14972226_SNP [dm3] 3R_19146504_SNP [dm6]	G	A	1.275e^-4	0.463	INTRON Ppcs
3L	12615625	3L_12615625_SNP [dm3] 3L_12622525_SNP [dm6]	T	A	1.278e^-4	0.464	DOWNSTREAM caup INTERGENIC
2R	10802114	2R_10802114_SNP [dm3] 2R_14914609_SNP [dm6]	C	G	1.283e^-4	0.464	INTRON CG10249
X	12055574	X_12055574_SNP [dm3] X_12161541_SNP [dm6]	G	T	1.284e^-4	0.464	INTRON Ten-a
2L	15826834	2L_15826834_SNP [dm3] 2L_15826834_SNP [dm6]	T	C	1.288e^-4	0.464	INTERGENIC
2R	18051252	2R_18051252_SNP [dm3] 2R_22163747_SNP [dm6]	G	T	1.292e^-4	0.465	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
X	18647812	X_18647812_SNP [dm3] X_18753779_SNP [dm6]	G	C	1.305e^-4	0.469	INTERGENIC
2R	10585592	2R_10585592_SNP [dm3] 2R_14698087_SNP [dm6]	T	A	1.327e^-4	0.476	INTRON mspo
3L	1440425	3L_1440425_SNP [dm3] 3L_1440425_SNP [dm6]	T	G	1.331e^-4	0.476	INTRON Ptp61F	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA
X	460720	X_460720_SNP [dm3] X_566687_SNP [dm6]	A	G	1.335e^-4	0.477	INTRON Appl
2L	17062467	2L_17062467_SNP [dm3] 2L_17062467_SNP [dm6]	A	T	1.340e^-4	0.477	INTERGENIC
3L	12615715	3L_12615715_DEL [dm3] 3L_12622615_DEL [dm6]	ATTA	A	1.349e^-4	0.477	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	8702252	2R_8702252_SNP [dm3] 2R_12814747_SNP [dm6]	A	G	1.349e^-4	0.477	INTERGENIC
3L	1231422	3L_1231422_SNP [dm3] 3L_1231422_SNP [dm6]	A	G	1.352e^-4	0.477	NON_SYNONYMOUS_CODING mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	14230075	2R_14230075_SNP [dm3] 2R_18342570_SNP [dm6]	C	A	1.354e^-4	0.477	INTRON sbb
2L	3459137	2L_3459137_SNP [dm3] 2L_3459137_SNP [dm6]	G	A	1.354e^-4	0.477	SYNONYMOUS_CODING Sec5	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2R	7982903	2R_7982903_SNP [dm3] 2R_12095398_SNP [dm6]	T	C	1.356e^-4	0.477	INTRON jeb
2L	9253255	2L_9253255_SNP [dm3] 2L_9253255_SNP [dm6]	A	G	1.357e^-4	0.477	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	10787296	2R_10787296_SNP [dm3] 2R_14899791_SNP [dm6]	A	G	1.358e^-4	0.477	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
X	19379732	X_19379732_SNP [dm3] X_19485699_SNP [dm6]	A	G	1.362e^-4	0.477	UPSTREAM CR43260 DOWNSTREAM pcm INTERGENIC
3L	12174639	3L_12174639_SNP [dm3] 3L_12181539_SNP [dm6]	G	A	1.368e^-4	0.479	INTRON CAH2
2R	17181037	2R_17181037_SNP [dm3] 2R_21293532_SNP [dm6]	A	T	1.370e^-4	0.479	UTR_5_PRIME Sgf29 UPSTREAM RpL29 & 1 other DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2L	15826838	2L_15826838_SNP [dm3] 2L_15826838_SNP [dm6]	T	A	1.377e^-4	0.48	INTERGENIC
2R	17301627	2R_17301627_SNP [dm3] 2R_21414122_SNP [dm6]	G	C	1.379e^-4	0.48	INTRON Sdc
2L	17054078	2L_17054078_SNP [dm3] 2L_17054078_SNP [dm6]	T	G	1.387e^-4	0.481	INTERGENIC
X	7884614	X_7884614_SNP [dm3] X_7990581_SNP [dm6]	C	T	1.388e^-4	0.481	INTERGENIC
2R	17182141	2R_17182141_SNP [dm3] 2R_21294636_SNP [dm6]	C	A	1.389e^-4	0.481	SYNONYMOUS_CODING CG9752 UPSTREAM Sgf29 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl mE1_TFBS_GATAe mE1_TFBS_HSA mE1_TFBS_jumu mE1_TFBS_sens
3L	1230505	3L_1230505_SNP [dm3] 3L_1230505_SNP [dm6]	C	T	1.393e^-4	0.481	SPLICE_SITE_REGION mwh INTRON mwh	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	3272656	2L_3272656_INS [dm3] 2L_3272656_INS [dm6]	T	TTATCTTATTACCGCGT...	1.397e^-4	0.482	DOWNSTREAM CG3347 INTERGENIC
2R	18051638	2R_18051638_SNP [dm3] 2R_22164133_SNP [dm6]	C	T	1.402e^-4	0.482	SYNONYMOUS_CODING CG34206 INTRON a
2L	2601799	2L_2601799_SNP [dm3] 2L_2601799_SNP [dm6]	T	G	1.404e^-4	0.482	UPSTREAM CR44789 INTERGENIC
2L	8959192	2L_8959192_SNP [dm3] 2L_8959192_SNP [dm6]	G	A	1.423e^-4	0.488	UPSTREAM CG31886 DOWNSTREAM CG9525 INTERGENIC
2L	13966393	2L_13966393_SNP [dm3] 2L_13966393_SNP [dm6]	C	T	1.429e^-4	0.489	INTRON NimB2
2R	12225548	2R_12225548_SNP [dm3] 2R_16338043_SNP [dm6]	T	C	1.435e^-4	0.49	UPSTREAM Hmgs INTRON Hmgs	TF binding site mE1_TFBS_Trl
2L	16396765	2L_16396765_SNP [dm3] 2L_16396765_SNP [dm6]	G	T	1.444e^-4	0.49	INTERGENIC
2L	3338964	2L_3338964_SNP [dm3] 2L_3338964_SNP [dm6]	T	C	1.447e^-4	0.49	INTRON E23	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Trl mE1_TFBS_zfh1
3L	10748823	3L_10748823_SNP [dm3] 3L_10755723_SNP [dm6]	C	T	1.450e^-4	0.49	INTERGENIC
3L	12615634	3L_12615634_SNP [dm3] 3L_12622534_SNP [dm6]	G	T	1.450e^-4	0.49	DOWNSTREAM caup INTERGENIC
X	11031712	X_11031712_SNP [dm3] X_11137679_SNP [dm6]	T	C	1.451e^-4	0.49	UPSTREAM Klp10A & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_h mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_Ubx
2R	10612175	2R_10612175_SNP [dm3] 2R_14724670_SNP [dm6]	A	G	1.454e^-4	0.49	INTERGENIC
2R	14222033	2R_14222033_SNP [dm3] 2R_18334528_SNP [dm6]	T	A	1.455e^-4	0.49	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2R	8907188	2R_8907188_SNP [dm3] 2R_13019683_SNP [dm6]	G	A	1.457e^-4	0.49	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	10111248	2R_10111248_SNP [dm3] 2R_14223743_SNP [dm6]	T	G	1.458e^-4	0.49	INTRON CG8468	TF binding site BDTNP1_TFBS_twi
2L	9253293	2L_9253293_SNP [dm3] 2L_9253293_SNP [dm6]	C	G	1.465e^-4	0.491	UPSTREAM borr DOWNSTREAM lectin-30A INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med
3L	3024694	3L_3024694_SNP [dm3] 3L_3024694_SNP [dm6]	G	A	1.466e^-4	0.491	SYNONYMOUS_CODING aly
2L	2424990	2L_2424990_SNP [dm3] 2L_2424990_SNP [dm6]	T	G	1.470e^-4	0.492	SYNONYMOUS_CODING CG44139 DOWNSTREAM CG9886
2R	10676540	2R_10676540_SNP [dm3] 2R_14789035_SNP [dm6]	C	T	1.474e^-4	0.492	INTRON kn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	9176248	2R_9176248_SNP [dm3] 2R_13288743_SNP [dm6]	T	A	1.475e^-4	0.492	INTRON Dh31-R
X	7887973	X_7887973_SNP [dm3] X_7993940_SNP [dm6]	C	T	1.491e^-4	0.495	INTERGENIC
3L	1270867	3L_1270867_SNP [dm3] 3L_1270867_SNP [dm6]	A	T	1.493e^-4	0.495	INTRON CG9134
2L	13041185	2L_13041185_SNP [dm3] 2L_13041185_SNP [dm6]	G	A	1.499e^-4	0.495	INTRON CG9932
3R	22032494	3R_22032494_SNP [dm3] 3R_26206772_SNP [dm6]	A	G	1.501e^-4	0.495	INTRON CR44320
2R	10786029	2R_10786029_SNP [dm3] 2R_14898524_SNP [dm6]	C	T	1.504e^-4	0.495	UPSTREAM Cyp317a1 INTRON Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_disco mE1_TFBS_HSA mE1_TFBS_Trl
2L	8534221	2L_8534221_SNP [dm3] 2L_8534221_SNP [dm6]	C	T	1.509e^-4	0.495	INTRON CG17834	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_cnc
2R	18985649	2R_18985649_SNP [dm3] 2R_23098126_SNP [dm6]	C	T	1.510e^-4	0.495	INTERGENIC
2R	10710033	2R_10710033_SNP [dm3] 2R_14822528_SNP [dm6]	T	A	1.511e^-4	0.495	INTERGENIC
2L	18554444	2L_18554444_SNP [dm3] 2L_18554444_SNP [dm6]	T	G	1.513e^-4	0.495	INTRON Pde11
2R	6817768	2R_6817768_SNP [dm3] 2R_10930263_SNP [dm6]	A	T	1.518e^-4	0.495	INTERGENIC
2R	7463829	2R_7463829_SNP [dm3] 2R_11576324_SNP [dm6]	C	A	1.519e^-4	0.495	INTERGENIC
2R	10182635	2R_10182635_SNP [dm3] 2R_14295130_SNP [dm6]	A	T	1.520e^-4	0.495	UTR_3_PRIME Ih INTRON Ih
2L	1937051	2L_1937051_SNP [dm3] 2L_1937051_SNP [dm6]	C	T	1.521e^-4	0.495	SPLICE_SITE_REGION CG7337 INTRON CG7337	TF binding site mE1_TFBS_cad
2L	10630373	2L_10630373_SNP [dm3] 2L_10630373_SNP [dm6]	G	A	1.529e^-4	0.495	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	20418957	2R_20418957_SNP [dm3] 2R_24531434_SNP [dm6]	G	A	1.531e^-4	0.495	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
X	7884512	X_7884512_SNP [dm3] X_7990479_SNP [dm6]	G	A	1.535e^-4	0.495	INTERGENIC
2R	19125343	2R_19125343_SNP [dm3] 2R_23237820_SNP [dm6]	T	C	1.536e^-4	0.495	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	20850093	2L_20850093_SNP [dm3] 2L_20850093_SNP [dm6]	G	T	1.537e^-4	0.495	SYNONYMOUS_CODING CG14402 DOWNSTREAM CG31676
2L	15930382	2L_15930382_SNP [dm3] 2L_15930382_SNP [dm6]	G	A	1.540e^-4	0.495	INTRON beat-Ib
3L	1267680	3L_1267680_SNP [dm3] 3L_1267680_SNP [dm6]	A	G	1.544e^-4	0.495	INTRON CG9134
2R	10174821	2R_10174821_SNP [dm3] 2R_14287316_SNP [dm6]	C	T	1.545e^-4	0.495	SYNONYMOUS_CODING Ih UTR_5_PRIME Ih UPSTREAM Ih	TF binding site BDTNP1_TFBS_da mE1_TFBS_cad mE1_TFBS_chinmo
2L	16386469	2L_16386469_SNP [dm3] 2L_16386469_SNP [dm6]	A	T	1.546e^-4	0.495	INTERGENIC
2R	15869005	2R_15869005_SNP [dm3] 2R_19981500_SNP [dm6]	T	C	1.548e^-4	0.495	UPSTREAM CG8654 INTRON CG8654	TF binding site mE1_TFBS_cad
3R	14599426	3R_14599426_SNP [dm3] 3R_18773704_SNP [dm6]	A	T	1.555e^-4	0.495	INTRON CG7720
2L	18554437	2L_18554437_SNP [dm3] 2L_18554437_SNP [dm6]	C	T	1.560e^-4	0.495	INTRON Pde11
2R	15203387	2R_15203387_SNP [dm3] 2R_19315882_SNP [dm6]	T	C	1.564e^-4	0.495	INTRON Rgk1
X	17224474	X_17224474_SNP [dm3] X_17330441_SNP [dm6]	A	G	1.571e^-4	0.495	INTERGENIC
2R	17819140	2R_17819140_SNP [dm3] 2R_21931635_SNP [dm6]	T	C	1.575e^-4	0.495	INTRON Fili
2R	20420329	2R_20420329_SNP [dm3] 2R_24532806_SNP [dm6]	C	G	1.576e^-4	0.495	DOWNSTREAM CG4622 INTRON CG13585
X	8255943	X_8255943_SNP [dm3] X_8361910_SNP [dm6]	G	A	1.576e^-4	0.495	INTRON nAChRalpha3
2R	7476182	2R_7476182_SNP [dm3] 2R_11588677_SNP [dm6]	T	A	1.578e^-4	0.495	UPSTREAM snoRNA:Psi28S-1936 INTRON tou	TF binding site mE1_TFBS_cad
3L	1266394	3L_1266394_SNP [dm3] 3L_1266394_SNP [dm6]	G	A	1.580e^-4	0.495	INTRON CG9134
2R	3373740	2R_3373740_SNP [dm3] 2R_7486235_SNP [dm6]	G	A	1.580e^-4	0.495	UTR_5_PRIME wech INTRON wech	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2R	9176336	2R_9176336_SNP [dm3] 2R_13288831_SNP [dm6]	T	A	1.582e^-4	0.495	INTRON Dh31-R
2R	10371682	2R_10371682_SNP [dm3] 2R_14484177_SNP [dm6]	G	T	1.586e^-4	0.495	INTRON L	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
3L	12615713	3L_12615713_SNP [dm3] 3L_12622613_SNP [dm6]	C	A	1.586e^-4	0.495	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12615714	3L_12615714_SNP [dm3] 3L_12622614_SNP [dm6]	T	G	1.586e^-4	0.495	DOWNSTREAM caup INTERGENIC	TF binding site BDTNP1_TFBS_twi
2R	20419089	2R_20419089_SNP [dm3] 2R_24531566_SNP [dm6]	A	G	1.586e^-4	0.495	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	12279590	2R_12279590_INS [dm3] 2R_16392085_INS [dm6]	A	AA	1.593e^-4	0.496	INTRON Sema-2b	TF binding site mE1_TFBS_chinmo mE1_TFBS_HSA mE1_TFBS_inv
2R	17692187	2R_17692187_SNP [dm3] 2R_21804682_SNP [dm6]	G	T	1.597e^-4	0.497	DOWNSTREAM CR9284 INTERGENIC
2L	17941517	2L_17941517_SNP [dm3] 2L_17941517_SNP [dm6]	G	C	1.604e^-4	0.498	INTERGENIC
X	8451631	X_8451631_SNP [dm3] X_8557598_SNP [dm6]	G	A	1.610e^-4	0.499	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	19593575	2L_19593575_DEL [dm3] 2L_19593575_DEL [dm6]	AA	T	1.619e^-4	0.501	INTRON Lar
2L	4367902	2L_4367902_SNP [dm3] 2L_4367902_SNP [dm6]	G	C	1.621e^-4	0.501	INTRON Traf4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_tll mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
3L	1026350	3L_1026350_SNP [dm3] 3L_1026350_SNP [dm6]	A	C	1.622e^-4	0.501	SPLICE_SITE_REGION trio INTRON trio	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
X	19981215	X_19981215_SNP [dm3] X_20087182_SNP [dm6]	T	G	1.636e^-4	0.501	INTERGENIC
X	17250812	X_17250812_SNP [dm3] X_17356779_SNP [dm6]	A	G	1.637e^-4	0.501	INTERGENIC	TF binding site mE1_TFBS_eve mE1_TFBS_HSA
2L	13282135	2L_13282135_SNP [dm3] 2L_13282135_SNP [dm6]	C	A	1.637e^-4	0.501	UTR_3_PRIME CG44085 INTRON CG44085
2R	7315344	2R_7315344_SNP [dm3] 2R_11427839_SNP [dm6]	G	T	1.638e^-4	0.501	UPSTREAM Drip INTRON Drip
2R	6082484	2R_6082484_SNP [dm3] 2R_10194979_SNP [dm6]	T	C	1.638e^-4	0.501	INTERGENIC
2L	4444288	2L_4444288_SNP [dm3] 2L_4444288_SNP [dm6]	G	A	1.641e^-4	0.501	SYNONYMOUS_CODING morgue UPSTREAM Elp3	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_inv
3R	25403352	3R_25403352_SNP [dm3] 3R_29577630_SNP [dm6]	G	A	1.642e^-4	0.501	INTERGENIC
2L	20249948	2L_20249948_SNP [dm3] 2L_20249948_SNP [dm6]	T	C	1.646e^-4	0.501	UPSTREAM CR40172 INTERGENIC
2R	10789834	2R_10789834_SNP [dm3] 2R_14902329_SNP [dm6]	C	G	1.657e^-4	0.504	SYNONYMOUS_CODING CG10249 UTR_3_PRIME Cyp317a1 & 1 other	TF binding site BDTNP1_TFBS_sna mE1_TFBS_HSA
2L	8886572	2L_8886572_SNP [dm3] 2L_8886572_SNP [dm6]	G	T	1.663e^-4	0.504	DOWNSTREAM CR44415 INTERGENIC	TF binding site mE1_TFBS_cnc
3L	15658307	3L_15658307_SNP [dm3] 3L_15665207_SNP [dm6]	T	A	1.663e^-4	0.504	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	12615576	3L_12615576_SNP [dm3] 3L_12622476_SNP [dm6]	G	C	1.665e^-4	0.504	DOWNSTREAM caup INTERGENIC
2L	8534128	2L_8534128_SNP [dm3] 2L_8534128_SNP [dm6]	T	C	1.671e^-4	0.504	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	10188073	2R_10188073_SNP [dm3] 2R_14300568_SNP [dm6]	C	A	1.672e^-4	0.504	NON_SYNONYMOUS_CODING tej DOWNSTREAM Ih
2R	9176332	2R_9176332_SNP [dm3] 2R_13288827_SNP [dm6]	A	T	1.680e^-4	0.504	INTRON Dh31-R
2R	15297212	2R_15297212_SNP [dm3] 2R_19409707_SNP [dm6]	A	G	1.683e^-4	0.504	SYNONYMOUS_CODING hts
2L	6677459	2L_6677459_SNP [dm3] 2L_6677459_SNP [dm6]	T	C	1.683e^-4	0.504	SYNONYMOUS_CODING CG11329 UPSTREAM cort DOWNSTREAM Nhe3	TF binding site mE1_TFBS_HSA mE1_TFBS_ttk
3L	10749406	3L_10749406_SNP [dm3] 3L_10756306_SNP [dm6]	C	T	1.685e^-4	0.504	INTERGENIC
2R	11704581	2R_11704581_SNP [dm3] 2R_15817076_SNP [dm6]	A	G	1.689e^-4	0.504	UPSTREAM Zasp52 INTRON tun	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	5722412	2L_5722412_SNP [dm3] 2L_5722412_SNP [dm6]	T	G	1.689e^-4	0.504	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	20420396	2R_20420396_SNP [dm3] 2R_24532873_SNP [dm6]	C	A	1.691e^-4	0.504	DOWNSTREAM CG4622 INTRON CG13585
2R	10647273	2R_10647273_SNP [dm3] 2R_14759768_SNP [dm6]	G	A	1.706e^-4	0.508	UTR_3_PRIME Spred UPSTREAM CG12857
2R	10787788	2R_10787788_SNP [dm3] 2R_14900283_SNP [dm6]	G	C	1.710e^-4	0.508	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens
2L	2601968	2L_2601968_SNP [dm3] 2L_2601968_SNP [dm6]	T	C	1.713e^-4	0.508	UPSTREAM CR44789 INTERGENIC
2L	2598841	2L_2598841_SNP [dm3] 2L_2598841_SNP [dm6]	G	A	1.713e^-4	0.508	EXON CR44790
X	7884439	X_7884439_SNP [dm3] X_7990406_SNP [dm6]	A	T	1.717e^-4	0.508	INTERGENIC
2R	13095941	2R_13095941_SNP [dm3] 2R_17208436_SNP [dm6]	G	C	1.727e^-4	0.51	INTERGENIC
2R	20169690	2R_20169690_SNP [dm3] 2R_24282167_SNP [dm6]	C	G	1.735e^-4	0.512	INTRON nvy	TF binding site mE1_TFBS_chinmo
3L	9799208	3L_9799208_SNP [dm3] 3L_9806108_SNP [dm6]	T	A	1.747e^-4	0.514	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	10153763	2R_10153763_SNP [dm3] 2R_14266258_SNP [dm6]	A	G	1.758e^-4	0.517	INTRON CG8547
2R	16038472	2R_16038472_SNP [dm3] 2R_20150967_SNP [dm6]	G	T	1.769e^-4	0.519	DOWNSTREAM CR45229 INTERGENIC
X	12291019	X_12291019_SNP [dm3] X_12396986_SNP [dm6]	C	T	1.773e^-4	0.52	INTERGENIC
2L	3701311	2L_3701311_SNP [dm3] 2L_3701311_SNP [dm6]	G	A	1.778e^-4	0.52	NON_SYNONYMOUS_CODING CG42467 UPSTREAM CG43145 DOWNSTREAM CG42465 & 1 other
X	7884632	X_7884632_SNP [dm3] X_7990599_SNP [dm6]	C	A	1.780e^-4	0.52	INTERGENIC
3R	26061500	3R_26061500_INS [dm3] 3R_30235778_INS [dm6]	C	TT	1.781e^-4	0.52	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6001141	2L_6001141_SNP [dm3] 2L_6001141_SNP [dm6]	C	T	1.793e^-4	0.522	INTRON Tsp26A	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
3L	12615617	3L_12615617_SNP [dm3] 3L_12622517_SNP [dm6]	T	A	1.805e^-4	0.525	DOWNSTREAM caup INTERGENIC
2L	3780139	2L_3780139_SNP [dm3] 2L_3780139_SNP [dm6]	A	G	1.813e^-4	0.526	SYNONYMOUS_CODING bowl	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2R	8245925	2R_8245925_SNP [dm3] 2R_12358420_SNP [dm6]	T	C	1.816e^-4	0.526	NON_SYNONYMOUS_CODING CG30049
3R	7719953	3R_7719953_SNP [dm3] 3R_11894231_SNP [dm6]	A	G	1.818e^-4	0.526	UTR_3_PRIME Cad87A UPSTREAM CG6971
2L	4376521	2L_4376521_SNP [dm3] 2L_4376521_SNP [dm6]	A	T	1.826e^-4	0.526	INTRON Traf4	TF binding site mE1_TFBS_cad
3R	12876924	3R_12876924_SNP [dm3] 3R_17051202_SNP [dm6]	A	G	1.828e^-4	0.526	INTERGENIC
3R	13450738	3R_13450738_SNP [dm3] 3R_17625016_SNP [dm6]	G	T	1.829e^-4	0.526	UPSTREAM AttD & 2 others INTERGENIC
2L	10556993	2L_10556993_SNP [dm3] 2L_10556993_SNP [dm6]	G	A	1.830e^-4	0.526	INTRON Trim9	TF binding site mE1_TFBS_inv
X	20873674	X_20873674_SNP [dm3] X_21002647_SNP [dm6]	A	C	1.835e^-4	0.526	INTERGENIC	transposable element FlyBase
3L	666058	3L_666058_SNP [dm3] 3L_666058_SNP [dm6]	A	C	1.836e^-4	0.526	INTERGENIC
2L	10632111	2L_10632111_SNP [dm3] 2L_10632111_SNP [dm6]	A	G	1.843e^-4	0.528	UPSTREAM CG7329 INTRON CG7329
3R	10873420	3R_10873420_DEL [dm3] 3R_15047698_DEL [dm6]	CA	C	1.849e^-4	0.529	INTERGENIC
2L	8390177	2L_8390177_SNP [dm3] 2L_8390177_SNP [dm6]	T	G	1.853e^-4	0.529	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	13346061	3L_13346061_SNP [dm3] 3L_13352961_SNP [dm6]	A	C	1.856e^-4	0.529	SYNONYMOUS_CODING CG17687
2L	2406879	2L_2406879_SNP [dm3] 2L_2406879_SNP [dm6]	T	A	1.858e^-4	0.529	INTRON VGlut
2R	10572661	2R_10572661_SNP [dm3] 2R_14685156_SNP [dm6]	A	C	1.860e^-4	0.529	INTRON mspo
2R	8383923	2R_8383923_SNP [dm3] 2R_12496418_SNP [dm6]	G	A	1.873e^-4	0.53	INTRON fdl & 1 other
2L	19920060	2L_19920060_SNP [dm3] 2L_19920060_SNP [dm6]	A	G	1.874e^-4	0.53	INTRON sick EXON CR43828
2L	2600116	2L_2600116_SNP [dm3] 2L_2600116_SNP [dm6]	C	T	1.875e^-4	0.53	UPSTREAM CR44790 DOWNSTREAM CR44789 INTERGENIC
2L	8389640	2L_8389640_SNP [dm3] 2L_8389640_SNP [dm6]	T	G	1.879e^-4	0.53	UPSTREAM snRNA:U6atac:29B & 1 other DOWNSTREAM CG13384 & 1 other INTERGENIC
2R	10104502	2R_10104502_SNP [dm3] 2R_14216997_SNP [dm6]	C	A	1.879e^-4	0.53	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
3L	15658364	3L_15658364_SNP [dm3] 3L_15665264_SNP [dm6]	C	A	1.895e^-4	0.533	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
3L	18295590	3L_18295590_SNP [dm3] 3L_18302490_SNP [dm6]	A	T	1.896e^-4	0.533	DOWNSTREAM grim INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_Kr
2R	5897587	2R_5897587_DEL [dm3] 2R_10010082_DEL [dm6]	TT	T	1.903e^-4	0.534	INTRON Pka-R2	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	9330240	2R_9330240_SNP [dm3] 2R_13442735_SNP [dm6]	G	C	1.904e^-4	0.534	DOWNSTREAM cnn INTRON cnn
2L	9335414	2L_9335414_SNP [dm3] 2L_9335414_SNP [dm6]	C	T	1.924e^-4	0.539	INTRON Eaat1
X	10753658	X_10753658_SNP [dm3] X_10859625_SNP [dm6]	C	A	1.927e^-4	0.539	SYNONYMOUS_CODING CG2186	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
2L	7166946	2L_7166946_SNP [dm3] 2L_7166946_SNP [dm6]	A	T	1.933e^-4	0.539	INTERGENIC
2R	17298636	2R_17298636_SNP [dm3] 2R_21411131_SNP [dm6]	T	A	1.939e^-4	0.54	INTRON Sdc
X	3916914	X_3916914_SNP [dm3] X_4022881_SNP [dm6]	A	C	1.943e^-4	0.54	INTERGENIC
2L	13893671	2L_13893671_SNP [dm3] 2L_13893671_SNP [dm6]	T	A	1.944e^-4	0.54	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
2L	7108028	2L_7108028_SNP [dm3] 2L_7108028_SNP [dm6]	G	A	1.951e^-4	0.541	INTRON Pvf3
2L	9258476	2L_9258476_SNP [dm3] 2L_9258476_SNP [dm6]	G	T	1.960e^-4	0.542	INTRON Ggamma30A
2R	7804624	2R_7804624_SNP [dm3] 2R_11917119_SNP [dm6]	C	T	1.962e^-4	0.542	UPSTREAM CR44305 INTERGENIC	TF binding site BDTNP1_TFBS_prd
2R	15157782	2R_15157782_SNP [dm3] 2R_19270277_SNP [dm6]	C	A	1.963e^-4	0.542	UTR_5_PRIME rib	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	1248379	2L_1248379_MNP [dm3] 2L_1248379_MNP [dm6]	AACG	GTTC	1.967e^-4	0.542	INTERGENIC
2L	20598586	2L_20598586_SNP [dm3] 2L_20598586_SNP [dm6]	C	A	1.970e^-4	0.543	INTRON CR44909
2R	18051253	2R_18051253_INS [dm3] 2R_22163748_INS [dm6]	C	CAAAAT	1.975e^-4	0.543	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3R	12881467	3R_12881467_DEL [dm3] 3R_17055745_DEL [dm6]	GAAAGCA	G	1.978e^-4	0.543	INTRON Dad	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_Trl
2R	10573735	2R_10573735_SNP [dm3] 2R_14686230_SNP [dm6]	G	A	1.983e^-4	0.543	INTRON mspo
X	10721448	X_10721448_SNP [dm3] X_10827415_SNP [dm6]	A	T	1.985e^-4	0.543	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	17052318	2L_17052318_SNP [dm3] 2L_17052318_SNP [dm6]	G	A	1.998e^-4	0.546	INTERGENIC
3R	3405376	3R_3405376_SNP [dm3] 3R_7579654_SNP [dm6]	T	G	1.999e^-4	0.546	INTRON CG34127
2R	20163033	2R_20163033_DEL [dm3] 2R_24275510_DEL [dm6]	CT	C	2.003e^-4	0.546	UPSTREAM nvy INTERGENIC	regulatory region REDfly_CRMs TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_ftz BDTNP1_TFBS_Mad BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7884580	X_7884580_SNP [dm3] X_7990547_SNP [dm6]	T	G	2.010e^-4	0.546	INTERGENIC
3L	3256359	3L_3256359_SNP [dm3] 3L_3256359_SNP [dm6]	G	A	2.011e^-4	0.546	INTERGENIC
X	18351380	X_18351380_SNP [dm3] X_18457347_SNP [dm6]	T	C	2.012e^-4	0.546	INTRON CG32547
X	7884436	X_7884436_SNP [dm3] X_7990403_SNP [dm6]	A	C	2.018e^-4	0.547	INTERGENIC
3L	1239138	3L_1239138_SNP [dm3] 3L_1239138_SNP [dm6]	G	A	2.023e^-4	0.548	UPSTREAM CG9192 INTRON CG9194
3L	15658366	3L_15658366_SNP [dm3] 3L_15665266_SNP [dm6]	T	A	2.029e^-4	0.548	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
4	674396	4_674396_INS [dm3] 4_653770_INS [dm6]	G	GCC	2.033e^-4	0.549	INTRON gw
X	9567450	X_9567450_SNP [dm3] X_9673417_SNP [dm6]	A	G	2.040e^-4	0.549	INTRON nej	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	13873435	2L_13873435_DEL [dm3] 2L_13873435_DEL [dm6]	TGTAT	T	2.040e^-4	0.549	INTRON CenG1A
2R	15220834	2R_15220834_SNP [dm3] 2R_19333329_SNP [dm6]	C	T	2.043e^-4	0.549	INTRON Rgk1 & 1 other
X	4561087	X_4561087_SNP [dm3] X_4667054_SNP [dm6]	C	G	2.046e^-4	0.549	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
2R	16038465	2R_16038465_SNP [dm3] 2R_20150960_SNP [dm6]	A	C	2.055e^-4	0.549	DOWNSTREAM CR45229 INTERGENIC
3R	25403404	3R_25403404_SNP [dm3] 3R_29577682_SNP [dm6]	G	A	2.058e^-4	0.549	INTERGENIC
X	13661900	X_13661900_SNP [dm3] X_13767867_SNP [dm6]	G	A	2.062e^-4	0.549	UTR_5_PRIME rdgB
2R	10787290	2R_10787290_SNP [dm3] 2R_14899785_SNP [dm6]	T	C	2.064e^-4	0.549	SYNONYMOUS_CODING Cyp317a1	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2L	10630394	2L_10630394_SNP [dm3] 2L_10630394_SNP [dm6]	G	A	2.065e^-4	0.549	SYNONYMOUS_CODING CG7329	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	9334558	2R_9334558_DEL [dm3] 2R_13447053_DEL [dm6]	CCGCCGTGAATC...	C	2.068e^-4	0.549	UPSTREAM CG30062 INTRON cnn	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi
2R	18051208	2R_18051208_SNP [dm3] 2R_22163703_SNP [dm6]	T	G	2.071e^-4	0.549	DOWNSTREAM CG34206 INTRON a	TF binding site mE1_TFBS_cad
2R	17775564	2R_17775564_SNP [dm3] 2R_21888059_SNP [dm6]	T	C	2.072e^-4	0.549	INTRON Fili
2L	16386485	2L_16386485_SNP [dm3] 2L_16386485_SNP [dm6]	A	T	2.073e^-4	0.549	INTERGENIC
2L	8534060	2L_8534060_SNP [dm3] 2L_8534060_SNP [dm6]	C	T	2.080e^-4	0.55	INTRON CG17834	TF binding site mE1_TFBS_cad mE1_TFBS_cnc
2R	17832065	2R_17832065_SNP [dm3] 2R_21944560_SNP [dm6]	C	T	2.091e^-4	0.552	UTR_3_PRIME Fili
2L	13960258	2L_13960258_SNP [dm3] 2L_13960258_SNP [dm6]	G	A	2.094e^-4	0.552	INTRON NimA
2R	18051256	2R_18051256_INS [dm3] 2R_22163751_INS [dm6]	A	ATA	2.097e^-4	0.552	UTR_3_PRIME CG34206 INTRON a	TF binding site mE1_TFBS_cad
3L	12615624	3L_12615624_SNP [dm3] 3L_12622524_SNP [dm6]	C	T	2.122e^-4	0.558	DOWNSTREAM caup INTERGENIC
2L	6594081	2L_6594081_SNP [dm3] 2L_6594081_SNP [dm6]	A	G	2.137e^-4	0.558	INTRON CG11319
3L	14244123	3L_14244123_INS [dm3] 3L_14251023_INS [dm6]	A	ACATACATA	2.139e^-4	0.558	INTERGENIC
3L	4341262	3L_4341262_SNP [dm3] 3L_4341262_SNP [dm6]	C	T	2.145e^-4	0.558	INTRON Cip4
2L	8390381	2L_8390381_SNP [dm3] 2L_8390381_SNP [dm6]	C	T	2.148e^-4	0.558	NON_SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
X	15970388	X_15970388_SNP [dm3] X_16076355_SNP [dm6]	T	G	2.152e^-4	0.558	UTR_3_PRIME Tob	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	15658303	3L_15658303_SNP [dm3] 3L_15665203_SNP [dm6]	G	T	2.152e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18478678	2L_18478678_SNP [dm3] 2L_18478678_SNP [dm6]	T	G	2.152e^-4	0.558	INTRON CG10283
2R	10104375	2R_10104375_SNP [dm3] 2R_14216870_SNP [dm6]	G	T	2.157e^-4	0.558	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
X	1572484	X_1572484_SNP [dm3] X_1678451_SNP [dm6]	T	C	2.161e^-4	0.558	INTRON CG32809
2R	13094633	2R_13094633_SNP [dm3] 2R_17207128_SNP [dm6]	G	A	2.163e^-4	0.558	INTERGENIC
2R	11973788	2R_11973788_SNP [dm3] 2R_16086283_SNP [dm6]	A	G	2.167e^-4	0.558	NON_SYNONYMOUS_CODING Dg INTRON Dg	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi
2L	13497954	2L_13497954_SNP [dm3] 2L_13497954_SNP [dm6]	G	T	2.170e^-4	0.558	INTRON CG42784
2L	8390736	2L_8390736_SNP [dm3] 2L_8390736_SNP [dm6]	C	T	2.172e^-4	0.558	SYNONYMOUS_CODING CG42820 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	4443508	2L_4443508_SNP [dm3] 2L_4443508_SNP [dm6]	G	C	2.178e^-4	0.558	SYNONYMOUS_CODING morgue DOWNSTREAM CG15432	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
X	11315367	X_11315367_SNP [dm3] X_11421334_SNP [dm6]	G	A	2.178e^-4	0.558	INTERGENIC
X	616267	X_616267_DEL [dm3] X_722234_DEL [dm6]	ACC	T	2.181e^-4	0.558	INTRON sdk
3R	20504390	3R_20504390_SNP [dm3] 3R_24678668_SNP [dm6]	A	G	2.182e^-4	0.558	INTRON slo	TF binding site BDTNP1_TFBS_z
X	19787721	X_19787721_SNP [dm3] X_19893688_SNP [dm6]	T	C	2.182e^-4	0.558	UPSTREAM Hers INTRON Hers
2L	19520806	2L_19520806_SNP [dm3] 2L_19520806_SNP [dm6]	G	A	2.184e^-4	0.558	SYNONYMOUS_CODING CG10132	TF binding site mE1_TFBS_chinmo
2R	16049980	2R_16049980_SNP [dm3] 2R_20162475_SNP [dm6]	C	T	2.187e^-4	0.558	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA
2R	13302129	2R_13302129_INS [dm3] 2R_17414624_INS [dm6]	G	GGTGTTG	2.190e^-4	0.558	CODON_INSERTION cnk DOWNSTREAM Prosalpha5
2L	3272651	2L_3272651_SNP [dm3] 2L_3272651_SNP [dm6]	T	C	2.191e^-4	0.558	DOWNSTREAM CG3347 INTERGENIC
2L	9259491	2L_9259491_SNP [dm3] 2L_9259491_SNP [dm6]	G	C	2.191e^-4	0.558	UTR_5_PRIME Ggamma30A INTRON Ggamma30A
2L	11427649	2L_11427649_DEL [dm3] 2L_11427649_DEL [dm6]	CTTCTTCCA	C	2.197e^-4	0.559	INTERGENIC
2R	14230064	2R_14230064_SNP [dm3] 2R_18342559_SNP [dm6]	T	A	2.198e^-4	0.559	INTRON sbb
3L	7906504	3L_7906504_SNP [dm3] 3L_7913404_SNP [dm6]	C	T	2.211e^-4	0.561	SYNONYMOUS_CODING CG8281 DOWNSTREAM CG8111	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo
2R	10722998	2R_10722998_SNP [dm3] 2R_14835493_SNP [dm6]	T	C	2.216e^-4	0.562	INTERGENIC
2R	20415840	2R_20415840_SNP [dm3] 2R_24528317_SNP [dm6]	G	A	2.220e^-4	0.562	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_HSA
2L	18730869	2L_18730869_INS [dm3] 2L_18730869_INS [dm6]	TC	CAGA	2.233e^-4	0.564	INTRON CG10348
2L	16922003	2L_16922003_SNP [dm3] 2L_16922003_SNP [dm6]	T	A	2.234e^-4	0.564	INTERGENIC
2R	10032024	2R_10032024_SNP [dm3] 2R_14144519_SNP [dm6]	A	G	2.242e^-4	0.564	DOWNSTREAM mir-989 INTERGENIC
2L	6501623	2L_6501623_SNP [dm3] 2L_6501623_SNP [dm6]	G	A	2.243e^-4	0.564	INTRON CG31637	TF binding site mE1_TFBS_sens
2L	17052312	2L_17052312_SNP [dm3] 2L_17052312_SNP [dm6]	G	A	2.251e^-4	0.564	INTERGENIC
2R	10874727	2R_10874727_SNP [dm3] 2R_14987222_SNP [dm6]	C	A	2.252e^-4	0.564	DOWNSTREAM CG7639 INTRON pcs	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_slp1 mE1_TFBS_cad mE1_TFBS_HSA
2L	13501845	2L_13501845_SNP [dm3] 2L_13501845_SNP [dm6]	C	T	2.252e^-4	0.564	UTR_3_PRIME B4 DOWNSTREAM B4
2R	20415835	2R_20415835_SNP [dm3] 2R_24528312_SNP [dm6]	A	C	2.253e^-4	0.564	NON_SYNONYMOUS_CODING Brca2	TF binding site mE1_TFBS_HSA
2R	13263982	2R_13263982_SNP [dm3] 2R_17376477_SNP [dm6]	T	A	2.259e^-4	0.564	UTR_3_PRIME mbl	TF binding site mE1_TFBS_kn
2L	17093125	2L_17093125_SNP [dm3] 2L_17093125_SNP [dm6]	G	C	2.260e^-4	0.564	INTERGENIC
X	11341164	X_11341164_SNP [dm3] X_11447131_SNP [dm6]	G	T	2.263e^-4	0.564	INTRON Evi5	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
3L	12615909	3L_12615909_SNP [dm3] 3L_12622809_SNP [dm6]	A	C	2.271e^-4	0.565	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3L	12615560	3L_12615560_SNP [dm3] 3L_12622460_SNP [dm6]	G	A	2.273e^-4	0.565	DOWNSTREAM caup INTERGENIC
3L	1267420	3L_1267420_SNP [dm3] 3L_1267420_SNP [dm6]	T	C	2.282e^-4	0.567	INTRON CG9134
2R	10171260	2R_10171260_SNP [dm3] 2R_14283755_SNP [dm6]	G	A	2.286e^-4	0.567	INTRON Ih
3R	22519134	3R_22519134_SNP [dm3] 3R_26693412_SNP [dm6]	C	T	2.287e^-4	0.567	INTRON TwdlQ	TF binding site mE1_TFBS_cad
3R	14600199	3R_14600199_DEL [dm3] 3R_18774477_DEL [dm6]	TT	T	2.295e^-4	0.567	INTRON CG7720
3L	18014179	3L_18014179_SNP [dm3] 3L_18021079_SNP [dm6]	G	T	2.296e^-4	0.567	INTRON Eip75B	TF binding site mE1_TFBS_Trl
2L	2603421	2L_2603421_SNP [dm3] 2L_2603421_SNP [dm6]	A	C	2.297e^-4	0.567	INTERGENIC
2L	17131737	2L_17131737_SNP [dm3] 2L_17131737_SNP [dm6]	A	G	2.301e^-4	0.567	INTRON beat-IIIa & 1 other
X	12342011	X_12342011_SNP [dm3] X_12447978_SNP [dm6]	A	T	2.309e^-4	0.568	INTRON Pkcdelta
2L	14460134	2L_14460134_SNP [dm3] 2L_14460134_SNP [dm6]	T	A	2.319e^-4	0.57	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14222128	2R_14222128_SNP [dm3] 2R_18334623_SNP [dm6]	T	A	2.326e^-4	0.57	INTRON sbb	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA
2L	20413220	2L_20413220_SNP [dm3] 2L_20413220_SNP [dm6]	C	G	2.328e^-4	0.57	INTRON CG10947
2L	6501646	2L_6501646_SNP [dm3] 2L_6501646_SNP [dm6]	T	C	2.330e^-4	0.57	INTRON CG31637	TF binding site mE1_TFBS_sens
3L	2990826	3L_2990826_SNP [dm3] 3L_2990826_SNP [dm6]	T	C	2.330e^-4	0.57	INTERGENIC
2R	13264170	2R_13264170_SNP [dm3] 2R_17376665_SNP [dm6]	C	T	2.334e^-4	0.57	UTR_3_PRIME mbl
3R	6179390	3R_6179390_DEL [dm3] 3R_10353668_DEL [dm6]	AT	A	2.342e^-4	0.571	INTRON jumu	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Kr mE1_TFBS_sens
3L	16797644	3L_16797644_SNP [dm3] 3L_16804544_SNP [dm6]	T	G	2.346e^-4	0.571	UPSTREAM nudC INTRON CG9674	TF binding site mE1_TFBS_cad
X	21061468	X_21061468_SNP [dm3] X_21190441_SNP [dm6]	G	A	2.354e^-4	0.573	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9378480	2L_9378480_SNP [dm3] 2L_9378480_SNP [dm6]	T	A	2.360e^-4	0.573	INTRON Shawl
3R	13450901	3R_13450901_SNP [dm3] 3R_17625179_SNP [dm6]	A	G	2.365e^-4	0.573	UPSTREAM AttD & 2 others INTERGENIC
2R	12089937	2R_12089937_SNP [dm3] 2R_16202432_SNP [dm6]	A	G	2.366e^-4	0.573	SYNONYMOUS_CODING shark DOWNSTREAM mrj	TF binding site mE1_TFBS_chinmo mE1_TFBS_sens
3L	1218864	3L_1218864_SNP [dm3] 3L_1218864_SNP [dm6]	G	A	2.372e^-4	0.573	UPSTREAM LysP INTRON mwh
3L	12840465	3L_12840465_SNP [dm3] 3L_12847365_SNP [dm6]	A	T	2.376e^-4	0.573	INTRON CG10948	TF binding site mE1_TFBS_kn
3L	1361143	3L_1361143_SNP [dm3] 3L_1361143_SNP [dm6]	T	C	2.376e^-4	0.573	INTRON Ptp61F	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_twi
3R	18733545	3R_18733545_SNP [dm3] 3R_22907823_SNP [dm6]	A	G	2.381e^-4	0.573	INTRON klg
2R	14706091	2R_14706091_SNP [dm3] 2R_18818586_SNP [dm6]	G	A	2.381e^-4	0.573	UPSTREAM Phb2 INTERGENIC
2R	17183061	2R_17183061_SNP [dm3] 2R_21295556_SNP [dm6]	G	A	2.387e^-4	0.573	UTR_5_PRIME CG9752 UPSTREAM CG42672	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi BDTNP1_TFBS_z mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_GATAe mE1_TFBS_h mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Ubx
2R	3521032	2R_3521032_SNP [dm3] 2R_7633527_SNP [dm6]	T	A	2.387e^-4	0.573	UTR_3_PRIME CG43341 INTRON CG43340 EXON CR45131
2L	8998239	2L_8998239_SNP [dm3] 2L_8998239_SNP [dm6]	C	T	2.388e^-4	0.573	SYNONYMOUS_CODING CG18661 UPSTREAM alien & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_sens mE1_TFBS_Ubx
X	15032469	X_15032469_DEL [dm3] X_15138436_DEL [dm6]	TT	T	2.401e^-4	0.574	UTR_3_PRIME RpL37a DOWNSTREAM RpL37a	TF binding site mE1_TFBS_bab1
3L	13346602	3L_13346602_SNP [dm3] 3L_13353502_SNP [dm6]	G	C	2.408e^-4	0.574	INTRON CG17687
2R	18696108	2R_18696108_SNP [dm3] 2R_22808603_SNP [dm6]	A	G	2.411e^-4	0.574	UTR_5_PRIME stl
3L	12615904	3L_12615904_SNP [dm3] 3L_12622804_SNP [dm6]	G	T	2.417e^-4	0.574	INTERGENIC	TF binding site BDTNP1_TFBS_twi
2L	6594116	2L_6594116_SNP [dm3] 2L_6594116_SNP [dm6]	C	T	2.418e^-4	0.574	INTRON CG11319	TF binding site BDTNP1_TFBS_dl
2L	17075381	2L_17075381_SNP [dm3] 2L_17075381_SNP [dm6]	T	C	2.420e^-4	0.574	INTERGENIC
2R	10366580	2R_10366580_SNP [dm3] 2R_14479075_SNP [dm6]	T	G	2.424e^-4	0.574	INTERGENIC
2L	16235893	2L_16235893_SNP [dm3] 2L_16235893_SNP [dm6]	T	C	2.425e^-4	0.574	SYNONYMOUS_CODING CG42817	TF binding site BDTNP1_TFBS_da mE1_TFBS_HSA
2L	8390166	2L_8390166_SNP [dm3] 2L_8390166_SNP [dm6]	A	G	2.428e^-4	0.574	SYNONYMOUS_CODING CG42820 UPSTREAM CG42819 DOWNSTREAM snRNA:U6atac:29B	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA
X	7884543	X_7884543_SNP [dm3] X_7990510_SNP [dm6]	A	C	2.428e^-4	0.574	INTERGENIC
X	8451562	X_8451562_SNP [dm3] X_8557529_SNP [dm6]	T	C	2.429e^-4	0.574	SYNONYMOUS_CODING IntS4	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
X	7884510	X_7884510_SNP [dm3] X_7990477_SNP [dm6]	G	T	2.433e^-4	0.575	INTERGENIC
3R	25403361	3R_25403361_SNP [dm3] 3R_29577639_SNP [dm6]	C	A	2.436e^-4	0.575	INTERGENIC
3L	16029024	3L_16029024_SNP [dm3] 3L_16035924_SNP [dm6]	C	T	2.440e^-4	0.575	STOP_GAINED CG5895	TF binding site BDTNP1_TFBS_twi
2R	18051240	2R_18051240_MNP [dm3] 2R_22163735_MNP [dm6]	ACTAA	TGGTT	2.445e^-4	0.575	UTR_3_PRIME CG34206 DOWNSTREAM CG34206 INTRON a INTRAGENIC CG34206	TF binding site mE1_TFBS_cad
X	7884453	X_7884453_SNP [dm3] X_7990420_SNP [dm6]	T	C	2.461e^-4	0.578	INTERGENIC
2R	10193310	2R_10193310_SNP [dm3] 2R_14305805_SNP [dm6]	G	A	2.470e^-4	0.579	INTERGENIC
X	19983490	X_19983490_SNP [dm3] X_20089457_SNP [dm6]	A	C	2.472e^-4	0.579	INTERGENIC
X	7884524	X_7884524_SNP [dm3] X_7990491_SNP [dm6]	A	T	2.473e^-4	0.579	INTERGENIC
2R	6858568	2R_6858568_DEL [dm3] 2R_10971063_DEL [dm6]	GAAATAG	G	2.482e^-4	0.58	INTERGENIC
2L	2586383	2L_2586383_SNP [dm3] 2L_2586383_SNP [dm6]	A	C	2.486e^-4	0.58	UPSTREAM Drp1 INTERGENIC
2R	18872939	2R_18872939_SNP [dm3] 2R_22985416_SNP [dm6]	T	G	2.489e^-4	0.58	START_GAINED twi UTR_5_PRIME twi UPSTREAM mir-4939 & 1 other DOWNSTREAM CG9897 EXON CR42742
2L	5192983	2L_5192983_SNP [dm3] 2L_5192983_SNP [dm6]	G	A	2.490e^-4	0.58	NON_SYNONYMOUS_CODING Msp300 UPSTREAM snmRNA:765	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
2L	9252480	2L_9252480_SNP [dm3] 2L_9252480_SNP [dm6]	A	G	2.504e^-4	0.582	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
2L	9252499	2L_9252499_SNP [dm3] 2L_9252499_SNP [dm6]	A	G	2.504e^-4	0.582	INTRON borr	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_HSA
3R	7293263	3R_7293263_SNP [dm3] 3R_11467541_SNP [dm6]	C	G	2.509e^-4	0.583	DOWNSTREAM CG17230 INTERGENIC
X	7807284	X_7807284_SNP [dm3] X_7913251_SNP [dm6]	A	T	2.515e^-4	0.583	INTRON snz
X	21062249	X_21062249_SNP [dm3] X_21191222_SNP [dm6]	C	T	2.522e^-4	0.584	INTERGENIC	TF binding site BDTNP1_TFBS_twi
3R	25403362	3R_25403362_SNP [dm3] 3R_29577640_SNP [dm6]	T	A	2.524e^-4	0.584	INTERGENIC
2L	11449345	2L_11449345_SNP [dm3] 2L_11449345_SNP [dm6]	C	T	2.526e^-4	0.584	INTERGENIC	regulatory region FlyBase REDfly_CRMs TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_gt mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens
2L	20598588	2L_20598588_SNP [dm3] 2L_20598588_SNP [dm6]	G	A	2.532e^-4	0.584	INTRON CR44909
2R	20419031	2R_20419031_SNP [dm3] 2R_24531508_SNP [dm6]	T	A	2.561e^-4	0.59	UPSTREAM CG13585 & 1 other INTERGENIC	insulator Insulator_Class_I.mE01 TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	7356409	2R_7356409_SNP [dm3] 2R_11468904_SNP [dm6]	T	G	2.570e^-4	0.591	INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_Trl
2R	7463873	2R_7463873_SNP [dm3] 2R_11576368_SNP [dm6]	G	T	2.572e^-4	0.591	INTERGENIC
X	4561091	X_4561091_SNP [dm3] X_4667058_SNP [dm6]	C	A	2.573e^-4	0.591	UPSTREAM CG3009 DOWNSTREAM rap INTERGENIC	TF binding site mE1_TFBS_bab1 mE1_TFBS_disco mE1_TFBS_HSA
X	12059708	X_12059708_SNP [dm3] X_12165675_SNP [dm6]	A	G	2.577e^-4	0.591	INTRON Ten-a
2R	11814354	2R_11814354_SNP [dm3] 2R_15926849_SNP [dm6]	C	T	2.585e^-4	0.591	NON_SYNONYMOUS_CODING bdg	TF binding site mE1_TFBS_cad
2R	3495087	2R_3495087_SNP [dm3] 2R_7607582_SNP [dm6]	A	C	2.585e^-4	0.591	INTRON CG1358
3R	12513916	3R_12513916_SNP [dm3] 3R_16688194_SNP [dm6]	G	C	2.586e^-4	0.591	INTRON Ubx	regulatory region REDfly_CRMs TF binding site mE1_TFBS_cad
2L	17941449	2L_17941449_SNP [dm3] 2L_17941449_SNP [dm6]	C	T	2.589e^-4	0.591	INTERGENIC
3R	23302904	3R_23302904_SNP [dm3] 3R_27477182_SNP [dm6]	T	A	2.597e^-4	0.592	INTERGENIC	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2R	17774664	2R_17774664_SNP [dm3] 2R_21887159_SNP [dm6]	A	C	2.601e^-4	0.592	INTRON Fili
2R	10372795	2R_10372795_SNP [dm3] 2R_14485290_SNP [dm6]	A	C	2.615e^-4	0.592	INTRON L	TF binding site mE1_TFBS_cad
2L	9385392	2L_9385392_SNP [dm3] 2L_9385392_SNP [dm6]	T	A	2.618e^-4	0.592	INTRON Shawl
3L	21081863	3L_21081863_SNP [dm3] 3L_21088763_SNP [dm6]	T	C	2.623e^-4	0.592	NON_SYNONYMOUS_CODING CG33285 INTRON ko	regulatory region REDfly_CRMs TF binding site mE1_TFBS_sens
3R	11253218	3R_11253218_DEL [dm3] 3R_15427496_DEL [dm6]	GTGTGGTG	G	2.625e^-4	0.592	UPSTREAM CG6118 INTRON CG6118
X	7884519	X_7884519_SNP [dm3] X_7990486_SNP [dm6]	G	A	2.634e^-4	0.592	INTERGENIC
2R	6786701	2R_6786701_SNP [dm3] 2R_10899196_SNP [dm6]	T	C	2.636e^-4	0.592	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	6786702	2R_6786702_INS [dm3] 2R_10899197_INS [dm6]	C	CC	2.636e^-4	0.592	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	6786708	2R_6786708_DEL [dm3] 2R_10899203_DEL [dm6]	GG	G	2.636e^-4	0.592	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	6786711	2R_6786711_SNP [dm3] 2R_10899206_SNP [dm6]	G	T	2.636e^-4	0.592	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	6786712	2R_6786712_DEL [dm3] 2R_10899207_DEL [dm6]	CAACCT	C	2.636e^-4	0.592	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	17185518	2R_17185518_SNP [dm3] 2R_21298013_SNP [dm6]	C	T	2.638e^-4	0.592	UPSTREAM CG42672 INTRON CG42672 EXON CR44724
2R	18363533	2R_18363533_SNP [dm3] 2R_22476028_SNP [dm6]	A	T	2.639e^-4	0.592	DOWNSTREAM CG45063 INTRON CG45062
X	11314428	X_11314428_INS [dm3] X_11420395_INS [dm6]	A	AA	2.646e^-4	0.592	INTERGENIC
2R	20419046	2R_20419046_SNP [dm3] 2R_24531523_SNP [dm6]	C	T	2.648e^-4	0.592	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	20419056	2R_20419056_SNP [dm3] 2R_24531533_SNP [dm6]	G	C	2.648e^-4	0.592	UPSTREAM CG13585 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_Trl
2R	10789928	2R_10789928_SNP [dm3] 2R_14902423_SNP [dm6]	A	G	2.650e^-4	0.592	UTR_3_PRIME Cyp317a1 INTRON CG10249	TF binding site BDTNP1_TFBS_sna
3L	7819192	3L_7819192_SNP [dm3] 3L_7826092_SNP [dm6]	A	G	2.662e^-4	0.594	SYNONYMOUS_CODING Pdp1 INTRON Pdp1	TF binding site BDTNP1_TFBS_twi mE1_TFBS_cad
X	11840457	X_11840457_SNP [dm3] X_11946424_SNP [dm6]	G	T	2.671e^-4	0.594	INTRON cac
3L	15578720	3L_15578720_SNP [dm3] 3L_15585620_SNP [dm6]	T	G	2.674e^-4	0.594	UTR_3_PRIME CG7656 DOWNSTREAM CG7656 & 1 other
2L	16921884	2L_16921884_SNP [dm3] 2L_16921884_SNP [dm6]	C	T	2.675e^-4	0.594	INTERGENIC
X	9847904	X_9847904_SNP [dm3] X_9953871_SNP [dm6]	C	T	2.676e^-4	0.594	INTERGENIC
2R	4107003	2R_4107003_SNP [dm3] 2R_8219498_SNP [dm6]	A	G	2.698e^-4	0.597	INTRON LRP1
2R	6265853	2R_6265853_SNP [dm3] 2R_10378348_SNP [dm6]	G	A	2.701e^-4	0.597	NON_SYNONYMOUS_CODING Ir47a UPSTREAM Ir47b INTRON CG42732
2R	7479698	2R_7479698_SNP [dm3] 2R_11592193_SNP [dm6]	A	T	2.701e^-4	0.597	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA
2R	14513849	2R_14513849_SNP [dm3] 2R_18626344_SNP [dm6]	T	C	2.702e^-4	0.597	INTRON Sec6	TF binding site mE1_TFBS_sens
X	7323922	X_7323922_SNP [dm3] X_7429889_SNP [dm6]	C	T	2.705e^-4	0.597	INTERGENIC
2L	17834211	2L_17834211_SNP [dm3] 2L_17834211_SNP [dm6]	A	T	2.712e^-4	0.597	INTRON CadN2	TF binding site mE1_TFBS_HSA
2R	9186595	2R_9186595_SNP [dm3] 2R_13299090_SNP [dm6]	T	G	2.714e^-4	0.597	UTR_5_PRIME CG17047 UPSTREAM CG4734 & 1 other
2R	3534413	2R_3534413_SNP [dm3] 2R_7646908_SNP [dm6]	A	C	2.719e^-4	0.597	SYNONYMOUS_CODING CG43340 INTRON CG43340	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	18696178	2R_18696178_SNP [dm3] 2R_22808673_SNP [dm6]	A	G	2.733e^-4	0.597	UTR_5_PRIME stl
2R	10597507	2R_10597507_SNP [dm3] 2R_14710002_SNP [dm6]	A	T	2.736e^-4	0.597	INTRON mspo
2R	11952875	2R_11952875_SNP [dm3] 2R_16065370_SNP [dm6]	G	A	2.736e^-4	0.597	UPSTREAM mir-137 INTERGENIC
2L	20838994	2L_20838994_SNP [dm3] 2L_20838994_SNP [dm6]	C	A	2.738e^-4	0.597	INTERGENIC
2R	7518816	2R_7518816_SNP [dm3] 2R_11631311_SNP [dm6]	T	A	2.738e^-4	0.597	INTRON CG9005	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_Trl
3L	14605753	3L_14605753_SNP [dm3] 3L_14612653_SNP [dm6]	A	G	2.740e^-4	0.597	INTERGENIC	TF binding site BDTNP1_TFBS_dl
2L	3576616	2L_3576616_SNP [dm3] 2L_3576616_SNP [dm6]	A	G	2.745e^-4	0.597	UTR_3_PRIME CG43815 DOWNSTREAM CR43822
2L	3576709	2L_3576709_SNP [dm3] 2L_3576709_SNP [dm6]	C	G	2.745e^-4	0.597	DOWNSTREAM CR43822 & 1 other INTERGENIC
2L	3576711	2L_3576711_SNP [dm3] 2L_3576711_SNP [dm6]	G	A	2.745e^-4	0.597	DOWNSTREAM CR43822 & 1 other INTERGENIC
2L	3576772	2L_3576772_SNP [dm3] 2L_3576772_SNP [dm6]	T	C	2.745e^-4	0.597	DOWNSTREAM CR43822 & 1 other INTERGENIC
2R	7154831	2R_7154831_SNP [dm3] 2R_11267326_SNP [dm6]	C	T	2.765e^-4	0.599	DOWNSTREAM Cpr47Ee INTRON Cpr47Ef
X	4786267	X_4786267_SNP [dm3] X_4892234_SNP [dm6]	C	A	2.765e^-4	0.599	INTRON CG42594
3L	18100385	3L_18100385_SNP [dm3] 3L_18107285_SNP [dm6]	A	G	2.772e^-4	0.599	SYNONYMOUS_CODING mRpS26 DOWNSTREAM CG5147	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2L	9258668	2L_9258668_SNP [dm3] 2L_9258668_SNP [dm6]	C	T	2.777e^-4	0.599	INTRON Ggamma30A
2R	6786699	2R_6786699_SNP [dm3] 2R_10899194_SNP [dm6]	G	T	2.777e^-4	0.599	UPSTREAM Rpb5 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_jumu
2R	20401786	2R_20401786_SNP [dm3] 2R_24514263_SNP [dm6]	A	T	2.778e^-4	0.599	INTRON Letm1	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	17775566	2R_17775566_SNP [dm3] 2R_21888061_SNP [dm6]	C	G	2.783e^-4	0.599	INTRON Fili
2R	3320509	2R_3320509_SNP [dm3] 2R_7433004_SNP [dm6]	T	G	2.787e^-4	0.599	UPSTREAM CR44204 INTRON so	TF binding site mE1_TFBS_cad mE1_TFBS_sens
2L	19921170	2L_19921170_SNP [dm3] 2L_19921170_SNP [dm6]	T	A	2.791e^-4	0.599	INTRON sick EXON CR43828
2L	6593836	2L_6593836_SNP [dm3] 2L_6593836_SNP [dm6]	T	C	2.793e^-4	0.599	INTRON CG11319
2L	20825567	2L_20825567_SNP [dm3] 2L_20825567_SNP [dm6]	T	C	2.794e^-4	0.599	UTR_5_PRIME CG9331 INTRON CG9331	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
2R	14515326	2R_14515326_SNP [dm3] 2R_18627821_SNP [dm6]	C	G	2.797e^-4	0.599	UPSTREAM Eip55E DOWNSTREAM Sec6 INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_sens
2R	8092594	2R_8092594_SNP [dm3] 2R_12205089_SNP [dm6]	G	A	2.801e^-4	0.599	INTERGENIC
3R	15093201	3R_15093201_DEL [dm3] 3R_19267479_DEL [dm6]	AATACTGTTA	A	2.803e^-4	0.599	INTERGENIC
2L	4258682	2L_4258682_SNP [dm3] 2L_4258682_SNP [dm6]	T	A	2.804e^-4	0.599	DOWNSTREAM CG15425 INTERGENIC
2R	16099233	2R_16099233_SNP [dm3] 2R_20211728_SNP [dm6]	A	C	2.807e^-4	0.599	SYNONYMOUS_CODING CG16894
X	12990022	X_12990022_SNP [dm3] X_13095989_SNP [dm6]	G	A	2.816e^-4	0.6	UTR_3_PRIME CG43313 DOWNSTREAM CG43313 & 1 other
3R	16007810	3R_16007810_SNP [dm3] 3R_20182088_SNP [dm6]	C	G	2.822e^-4	0.6	INTERGENIC
3R	14953944	3R_14953944_SNP [dm3] 3R_19128222_SNP [dm6]	G	A	2.826e^-4	0.6	INTRON CG6040
X	16132371	X_16132371_SNP [dm3] X_16238338_SNP [dm6]	G	A	2.829e^-4	0.6	INTERGENIC
X	10767748	X_10767748_SNP [dm3] X_10873715_SNP [dm6]	A	G	2.831e^-4	0.6	SPLICE_SITE_REGION CG1637 DOWNSTREAM CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	20504004	2L_20504004_SNP [dm3] 2L_20504004_SNP [dm6]	C	A	2.831e^-4	0.6	INTERGENIC
2L	6405120	2L_6405120_SNP [dm3] 2L_6405120_SNP [dm6]	T	C	2.832e^-4	0.6	INTRON CG42368
X	7884655	X_7884655_DEL [dm3] X_7990622_DEL [dm6]	GG	G	2.835e^-4	0.6	INTERGENIC
2R	19172471	2R_19172471_SNP [dm3] 2R_23284948_SNP [dm6]	A	G	2.840e^-4	0.6	UTR_3_PRIME CG13541 UPSTREAM CG3124	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	12311078	2R_12311078_SNP [dm3] 2R_16423573_SNP [dm6]	C	T	2.850e^-4	0.601	SYNONYMOUS_CODING Sema-2b
X	7884434	X_7884434_SNP [dm3] X_7990401_SNP [dm6]	C	T	2.854e^-4	0.601	INTERGENIC
2R	17181392	2R_17181392_SNP [dm3] 2R_21293887_SNP [dm6]	T	A	2.858e^-4	0.602	UPSTREAM Sgf29 DOWNSTREAM CG9752 INTRON RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_slp1 BDTNP1_TFBS_z mE1_TFBS_HSA
2R	17290611	2R_17290611_SNP [dm3] 2R_21403106_SNP [dm6]	C	T	2.873e^-4	0.603	INTRON Sdc
2R	17182549	2R_17182549_SNP [dm3] 2R_21295044_SNP [dm6]	T	G	2.874e^-4	0.603	SYNONYMOUS_CODING CG9752 UPSTREAM CG42672 DOWNSTREAM RpL29	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_z mE1_TFBS_HSA mE1_TFBS_sens
2R	8274480	2R_8274480_SNP [dm3] 2R_12386975_SNP [dm6]	C	G	2.875e^-4	0.603	UTR_5_PRIME Cpr49Ac
2L	17941426	2L_17941426_SNP [dm3] 2L_17941426_SNP [dm6]	A	T	2.879e^-4	0.603	INTERGENIC	transposable element FlyBase
2R	13141080	2R_13141080_SNP [dm3] 2R_17253575_SNP [dm6]	A	G	2.890e^-4	0.604	DOWNSTREAM CR43660 INTRON mbl	TF binding site BDTNP1_TFBS_twi
2R	13103087	2R_13103087_SNP [dm3] 2R_17215582_SNP [dm6]	G	A	2.897e^-4	0.604	UPSTREAM mbl INTERGENIC	TF binding site BDTNP1_TFBS_z
3L	15944390	3L_15944390_SNP [dm3] 3L_15951290_SNP [dm6]	T	A	2.898e^-4	0.604	INTRON Pka-C3
3R	25403393	3R_25403393_SNP [dm3] 3R_29577671_SNP [dm6]	C	A	2.901e^-4	0.604	INTERGENIC
2R	7459953	2R_7459953_SNP [dm3] 2R_11572448_SNP [dm6]	A	C	2.902e^-4	0.604	INTERGENIC
2L	3588743	2L_3588743_SNP [dm3] 2L_3588743_SNP [dm6]	A	G	2.903e^-4	0.604	EXON CR43823
X	17240038	X_17240038_SNP [dm3] X_17346005_SNP [dm6]	C	T	2.909e^-4	0.604	INTERGENIC	silencer mE1_HDAC_PRE TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
3R	6362156	3R_6362156_SNP [dm3] 3R_10536434_SNP [dm6]	A	C	2.910e^-4	0.604	INTRON hth	TF binding site BDTNP1_TFBS_dl mE1_TFBS_cad mE1_TFBS_HSA mE1_TFBS_Trl
2R	3527972	2R_3527972_SNP [dm3] 2R_7640467_SNP [dm6]	C	A	2.912e^-4	0.604	NON_SYNONYMOUS_CODING CG43340	TF binding site mE1_TFBS_cad
X	5585183	X_5585183_SNP [dm3] X_5691150_SNP [dm6]	T	C	2.913e^-4	0.604	INTRON cv EXON CR45525	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	18192471	2L_18192471_SNP [dm3] 2L_18192471_SNP [dm6]	A	G	2.940e^-4	0.609	INTRON CG42750
2L	12851328	2L_12851328_SNP [dm3] 2L_12851328_SNP [dm6]	A	G	2.958e^-4	0.612	INTERGENIC	TF binding site mE1_TFBS_inv
2L	2356789	2L_2356789_SNP [dm3] 2L_2356789_SNP [dm6]	G	A	2.966e^-4	0.613	SYNONYMOUS_CODING eys INTRON CG9967	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA
2L	6326195	2L_6326195_SNP [dm3] 2L_6326195_SNP [dm6]	C	A	2.970e^-4	0.613	SYNONYMOUS_CODING PDZ-GEF	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_sens
3L	11840419	3L_11840419_SNP [dm3] 3L_11847319_SNP [dm6]	A	G	2.981e^-4	0.613	DOWNSTREAM CG12521 INTERGENIC
2L	13497951	2L_13497951_SNP [dm3] 2L_13497951_SNP [dm6]	T	C	2.982e^-4	0.613	INTRON CG42784
2R	14515201	2R_14515201_SNP [dm3] 2R_18627696_SNP [dm6]	C	G	2.983e^-4	0.613	UTR_3_PRIME Sec6 UPSTREAM Eip55E	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_twi mE1_TFBS_HSA
2R	4826061	2R_4826061_SNP [dm3] 2R_8938556_SNP [dm6]	A	G	2.985e^-4	0.613	SYNONYMOUS_CODING FANCI	TF binding site mE1_TFBS_sens
2R	10104473	2R_10104473_SNP [dm3] 2R_14216968_SNP [dm6]	A	T	2.989e^-4	0.613	UPSTREAM RpS23 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi mE1_TFBS_bab1 mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_Ubx
2R	12092967	2R_12092967_SNP [dm3] 2R_16205462_SNP [dm6]	C	G	2.990e^-4	0.613	SYNONYMOUS_CODING mrj UTR_5_PRIME mrj INTRON mrj	TF binding site mE1_TFBS_HSA mE1_TFBS_sens
2R	10180722	2R_10180722_SNP [dm3] 2R_14293217_SNP [dm6]	G	A	2.996e^-4	0.613	UTR_3_PRIME Ih DOWNSTREAM Ih INTRON Ih
2R	9632167	2R_9632167_SNP [dm3] 2R_13744662_SNP [dm6]	T	C	2.997e^-4	0.613	INTRON fas
2R	9253351	2R_9253351_SNP [dm3] 2R_13365846_SNP [dm6]	A	T	3.002e^-4	0.613	INTERGENIC	TF binding site mE1_TFBS_cad
2L	14323202	2L_14323202_SNP [dm3] 2L_14323202_SNP [dm6]	T	A	3.012e^-4	0.615	SYNONYMOUS_CODING wb	TF binding site mE1_TFBS_cad
X	7884529	X_7884529_INS [dm3] X_7990496_INS [dm6]	T	TGG	3.018e^-4	0.615	INTERGENIC
3L	8606519	3L_8606519_SNP [dm3] 3L_8613419_SNP [dm6]	C	T	3.020e^-4	0.615	INTRON CG6282
3R	17656176	3R_17656176_SNP [dm3] 3R_21830454_SNP [dm6]	C	A	3.023e^-4	0.615	INTERGENIC
2L	9120933	2L_9120933_SNP [dm3] 2L_9120933_SNP [dm6]	G	C	3.027e^-4	0.615	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
X	11315388	X_11315388_INS [dm3] X_11421355_INS [dm6]	A	AA	3.028e^-4	0.615	INTERGENIC
2L	19995936	2L_19995936_SNP [dm3] 2L_19995936_SNP [dm6]	T	G	3.044e^-4	0.617	INTRON CG43861
X	19705150	X_19705150_SNP [dm3] X_19811117_SNP [dm6]	A	G	3.068e^-4	0.62	INTERGENIC
2R	17181878	2R_17181878_SNP [dm3] 2R_21294373_SNP [dm6]	G	T	3.071e^-4	0.62	UTR_3_PRIME RpL29 UPSTREAM Sgf29 DOWNSTREAM CG9752	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_Med mE1_TFBS_HSA mE1_TFBS_sens
X	11315357	X_11315357_SNP [dm3] X_11421324_SNP [dm6]	G	A	3.073e^-4	0.62	INTERGENIC
3L	12615558	3L_12615558_SNP [dm3] 3L_12622458_SNP [dm6]	C	T	3.074e^-4	0.62	DOWNSTREAM caup INTERGENIC
2R	9450709	2R_9450709_SNP [dm3] 2R_13563204_SNP [dm6]	T	C	3.076e^-4	0.62	INTERGENIC	TF binding site BDTNP1_TFBS_bcd BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_gt BDTNP1_TFBS_hb BDTNP1_TFBS_kni BDTNP1_TFBS_Med BDTNP1_TFBS_prd BDTNP1_TFBS_shn BDTNP1_TFBS_sna BDTNP1_TFBS_tll BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_cnc mE1_TFBS_D mE1_TFBS_disco mE1_TFBS_eve mE1_TFBS_hkb mE1_TFBS_HSA mE1_TFBS_inv mE1_TFBS_Kr mE1_TFBS_sens mE1_TFBS_Trl mE1_TFBS_zfh1
3R	4691812	3R_4691812_SNP [dm3] 3R_8866090_SNP [dm6]	C	T	3.077e^-4	0.62	INTRON pyd
3R	18775081	3R_18775081_SNP [dm3] 3R_22949359_SNP [dm6]	T	C	3.080e^-4	0.62	INTRON klg
3R	25403544	3R_25403544_SNP [dm3] 3R_29577822_SNP [dm6]	A	C	3.091e^-4	0.621	INTERGENIC	TF binding site mE1_TFBS_sens
3L	1230062	3L_1230062_SNP [dm3] 3L_1230062_SNP [dm6]	T	C	3.096e^-4	0.621	INTRON mwh	TF binding site mE1_TFBS_chinmo
3R	12872450	3R_12872450_SNP [dm3] 3R_17046728_SNP [dm6]	C	T	3.097e^-4	0.621	SYNONYMOUS_CODING Patr-1
2L	5453268	2L_5453268_SNP [dm3] 2L_5453268_SNP [dm6]	G	A	3.100e^-4	0.621	INTERGENIC	TF binding site BDTNP1_TFBS_twi mE1_TFBS_HSA mE1_TFBS_inv
3R	7759437	3R_7759437_INS [dm3] 3R_11933715_INS [dm6]	A	CATAGG	3.106e^-4	0.621	DOWNSTREAM CG14731 INTRON Cad87A
3L	10726178	3L_10726178_SNP [dm3] 3L_10733078_SNP [dm6]	A	G	3.113e^-4	0.621	INTERGENIC
2R	9977481	2R_9977481_SNP [dm3] 2R_14089976_SNP [dm6]	A	G	3.114e^-4	0.621	UPSTREAM CG42287 INTRON Prosap
X	13403464	X_13403464_SNP [dm3] X_13509431_SNP [dm6]	T	G	3.117e^-4	0.621	INTRON Neto
3R	25421601	3R_25421601_SNP [dm3] 3R_29595879_SNP [dm6]	A	T	3.119e^-4	0.621	INTRON alph
3R	18584133	3R_18584133_SNP [dm3] 3R_22758411_SNP [dm6]	T	A	3.119e^-4	0.621	DOWNSTREAM CG4725 INTRON Usp12-46 & 1 other
3R	26068329	3R_26068329_SNP [dm3] 3R_30242607_SNP [dm6]	A	T	3.122e^-4	0.621	SPLICE_SITE_REGION CG9737 INTRON CG9737
X	16162361	X_16162361_SNP [dm3] X_16268328_SNP [dm6]	G	A	3.132e^-4	0.622	SYNONYMOUS_CODING kat80
X	8414123	X_8414123_INS [dm3] X_8520090_INS [dm6]	T	TC	3.136e^-4	0.622	INTRON Nrg
3R	10825491	3R_10825491_SNP [dm3] 3R_14999769_SNP [dm6]	A	G	3.138e^-4	0.622	INTERGENIC
X	20434560	X_20434560_INS [dm3] X_20563533_INS [dm6]	C	CTTGC	3.147e^-4	0.622	INTRON RunxB
2L	17829955	2L_17829955_SNP [dm3] 2L_17829955_SNP [dm6]	C	A	3.149e^-4	0.622	INTRON CadN2
2R	11264230	2R_11264230_DEL [dm3] 2R_15376725_DEL [dm6]	TAATGAT	T	3.154e^-4	0.622	UTR_3_PRIME dup UPSTREAM CR43186	TF binding site mE1_TFBS_cad
3R	25057222	3R_25057222_SNP [dm3] 3R_29231500_SNP [dm6]	G	A	3.159e^-4	0.622	NON_SYNONYMOUS_CODING CG15817	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo
3L	18872779	3L_18872779_SNP [dm3] 3L_18879679_SNP [dm6]	C	T	3.168e^-4	0.622	SYNONYMOUS_CODING CG3961	TF binding site mE1_TFBS_cad
3R	16005076	3R_16005076_SNP [dm3] 3R_20179354_SNP [dm6]	T	A	3.169e^-4	0.622	INTERGENIC
2L	2601798	2L_2601798_SNP [dm3] 2L_2601798_SNP [dm6]	C	T	3.175e^-4	0.622	UPSTREAM CR44789 INTERGENIC
3L	2400054	3L_2400054_SNP [dm3] 3L_2400054_SNP [dm6]	G	T	3.175e^-4	0.622	UPSTREAM CG45186 INTRON CG45186
X	12045411	X_12045411_SNP [dm3] X_12151378_SNP [dm6]	T	G	3.176e^-4	0.622	INTRON Ten-a
2L	5722491	2L_5722491_SNP [dm3] 2L_5722491_SNP [dm6]	T	A	3.178e^-4	0.622	NON_SYNONYMOUS_CODING sip1	TF binding site mE1_TFBS_cad mE1_TFBS_chinmo mE1_TFBS_HSA
3L	12615554	3L_12615554_SNP [dm3] 3L_12622454_SNP [dm6]	A	G	3.179e^-4	0.622	DOWNSTREAM caup INTERGENIC
2R	13095687	2R_13095687_SNP [dm3] 2R_17208182_SNP [dm6]	C	G	3.181e^-4	0.622	INTERGENIC
3L	19783336	3L_19783336_SNP [dm3] 3L_19790236_SNP [dm6]	C	A	3.181e^-4	0.622	UTR_5_PRIME CG42637 & 1 other	TF binding site BDTNP1_TFBS_dl mE1_TFBS_HSA mE1_TFBS_sens mE1_TFBS_Trl
3L	12615544	3L_12615544_DEL [dm3] 3L_12622444_DEL [dm6]	AATGA	A	3.191e^-4	0.622	DOWNSTREAM caup INTERGENIC
3L	10749323	3L_10749323_SNP [dm3] 3L_10756223_SNP [dm6]	G	C	3.193e^-4	0.622	INTERGENIC
3R	14618435	3R_14618435_SNP [dm3] 3R_18792713_SNP [dm6]	A	G	3.193e^-4	0.622	UPSTREAM CG7720 INTRON CG7720
3R	18368477	3R_18368477_SNP [dm3] 3R_22542755_SNP [dm6]	T	C	3.194e^-4	0.622	UPSTREAM CR45647 DOWNSTREAM AdipoR INTERGENIC
2L	9119950	2L_9119950_SNP [dm3] 2L_9119950_SNP [dm6]	A	G	3.207e^-4	0.624	EXON CR44617
2R	11976344	2R_11976344_SNP [dm3] 2R_16088839_SNP [dm6]	T	A	3.222e^-4	0.626	INTRON Dg
2R	10760745	2R_10760745_SNP [dm3] 2R_14873240_SNP [dm6]	C	G	3.223e^-4	0.626	SYNONYMOUS_CODING Cyp6a22 UPSTREAM Cyp6a17
2L	11314770	2L_11314770_SNP [dm3] 2L_11314770_SNP [dm6]	T	A	3.229e^-4	0.626	INTERGENIC
3L	9046729	3L_9046729_SNP [dm3] 3L_9053629_SNP [dm6]	A	G	3.234e^-4	0.626	UPSTREAM Argk INTRON Argk	TF binding site mE1_TFBS_HSA mE1_TFBS_Trl
2R	4511520	2R_4511520_SNP [dm3] 2R_8624015_SNP [dm6]	T	G	3.237e^-4	0.626	UTR_3_PRIME Cirl
X	21061442	X_21061442_SNP [dm3] X_21190415_SNP [dm6]	T	A	3.242e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_prd BDTNP1_TFBS_twi mE1_TFBS_HSA
3L	19453969	3L_19453969_SNP [dm3] 3L_19460869_SNP [dm6]	T	G	3.243e^-4	0.626	INTERGENIC
2L	3440649	2L_3440649_SNP [dm3] 2L_3440649_SNP [dm6]	C	A	3.250e^-4	0.626	INTERGENIC
2L	7108002	2L_7108002_SNP [dm3] 2L_7108002_SNP [dm6]	T	G	3.251e^-4	0.626	INTRON Pvf3
2R	18059994	2R_18059994_DEL [dm3] 2R_22172489_DEL [dm6]	TTT	T	3.254e^-4	0.626	DOWNSTREAM CG3045 INTRON a
2R	6861309	2R_6861309_SNP [dm3] 2R_10973804_SNP [dm6]	G	A	3.257e^-4	0.626	INTERGENIC
2R	8638091	2R_8638091_SNP [dm3] 2R_12750586_SNP [dm6]	C	T	3.263e^-4	0.626	SYNONYMOUS_CODING CG42663 DOWNSTREAM mos	TF binding site mE1_TFBS_cad
4	905888	4_905888_SNP [dm3] 4_885262_SNP [dm6]	G	A	3.265e^-4	0.626	DOWNSTREAM CR44029 INTRON unc-13
3L	9356600	3L_9356600_SNP [dm3] 3L_9363500_SNP [dm6]	A	G	3.267e^-4	0.626	SYNONYMOUS_CODING Klp67A UPSTREAM CG4447 DOWNSTREAM CG34456
2L	6501710	2L_6501710_SNP [dm3] 2L_6501710_SNP [dm6]	C	A	3.267e^-4	0.626	INTRON CG31637	TF binding site mE1_TFBS_sens
4	957263	4_957263_SNP [dm3] 4_936637_SNP [dm6]	T	C	3.273e^-4	0.626	UPSTREAM mGluR INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_sna mE1_TFBS_HSA mE1_TFBS_Trl
2R	7319630	2R_7319630_SNP [dm3] 2R_11432125_SNP [dm6]	C	G	3.273e^-4	0.626	DOWNSTREAM CR43771 INTERGENIC
2R	11959148	2R_11959148_SNP [dm3] 2R_16071643_SNP [dm6]	A	T	3.279e^-4	0.626	INTERGENIC	TF binding site BDTNP1_TFBS_dl mE1_TFBS_chinmo mE1_TFBS_HSA
2L	2555831	2L_2555831_SNP [dm3] 2L_2555831_SNP [dm6]	C	G	3.279e^-4	0.626	EXON CR44113
3L	13611747	3L_13611747_SNP [dm3] 3L_13618647_SNP [dm6]	G	C	3.294e^-4	0.627	INTRON bru-3
2L	9120812	2L_9120812_SNP [dm3] 2L_9120812_SNP [dm6]	T	C	3.295e^-4	0.627	DOWNSTREAM CR44617 & 1 other INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med mE1_TFBS_HSA
3R	12873703	3R_12873703_SNP [dm3] 3R_17047981_SNP [dm6]	A	G	3.303e^-4	0.628	UTR_3_PRIME Patr-1 DOWNSTREAM Patr-1	TF binding site mE1_TFBS_HSA mE1_TFBS_kn mE1_TFBS_zfh1
2L	13893625	2L_13893625_SNP [dm3] 2L_13893625_SNP [dm6]	A	T	3.307e^-4	0.628	UPSTREAM CenG1A INTRON CenG1A	TF binding site BDTNP1_TFBS_dl mE1_TFBS_bab1 mE1_TFBS_cad
X	7884411	X_7884411_MNP [dm3] X_7990378_MNP [dm6]	CGC	ACT	3.316e^-4	0.629	INTERGENIC
2R	13094648	2R_13094648_SNP [dm3] 2R_17207143_SNP [dm6]	G	C	3.319e^-4	0.629	INTERGENIC
2L	14067616	2L_14067616_DEL [dm3] 2L_14067616_DEL [dm6]	GAG	G	3.321e^-4	0.629	INTRON nAChRalpha5
X	18988419	X_18988419_SNP [dm3] X_19094386_SNP [dm6]	G	C	3.326e^-4	0.629	INTERGENIC
X	10767747	X_10767747_SNP [dm3] X_10873714_SNP [dm6]	C	G	3.330e^-4	0.629	SPLICE_SITE_REGION CG1637 DOWNSTREAM CG1637 INTRON CG1637	TF binding site mE1_TFBS_cad mE1_TFBS_HSA
2L	9120390	2L_9120390_SNP [dm3] 2L_9120390_SNP [dm6]	A	C	3.335e^-4	0.629	DOWNSTREAM CR44617 INTERGENIC	TF binding site BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med
3L	15658285	3L_15658285_SNP [dm3] 3L_15665185_SNP [dm6]	A	G	3.336e^-4	0.629	INTERGENIC	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_Med BDTNP1_TFBS_twi
2L	2326005	2L_2326005_SNP [dm3] 2L_2326005_SNP [dm6]	C	A	3.347e^-4	0.63	INTRON CG9967 & 1 other	TF binding site mE1_TFBS_HSA mE1_TFBS_sbb
2L	6001758	2L_6001758_SNP [dm3] 2L_6001758_SNP [dm6]	C	A	3.348e^-4	0.63	UTR_3_PRIME Tsp26A
2R	7315395	2R_7315395_SNP [dm3] 2R_11427890_SNP [dm6]	A	G	3.352e^-4	0.63	UPSTREAM Drip INTRON Drip
3L	9799207	3L_9799207_SNP [dm3] 3L_9806107_SNP [dm6]	G	A	3.352e^-4	0.63	INTRON CG32052	TF binding site BDTNP1_TFBS_sna BDTNP1_TFBS_twi
3L	4589469	3L_4589469_SNP [dm3] 3L_4589469_SNP [dm6]	A	G	3.354e^-4	0.63	INTRON CG42540
2R	7479864	2R_7479864_SNP [dm3] 2R_11592359_SNP [dm6]	C	T	3.363e^-4	0.63	UPSTREAM snoRNA:Psi28S-1180 INTRON tou	TF binding site BDTNP1_TFBS_da BDTNP1_TFBS_dl BDTNP1_TFBS_hb BDTNP1_TFBS_Med BDTNP1_TFBS_sna BDTNP1_TFBS_twi mE1_TFBS_cad mE1_TFBS_Trl

By genomic position
Variant impact
Gene name

Delta_Alive.at.48h Experience 5 phenotype

Phenotype distribution and association to known covariates

QQplot

Manhattan plot

GWAS results